##maf version=1 scoring=roast.v3.3
a score=2757.000000
s hg38.chr3_KI270935v1_alt         0 10 +    197351 CATTATAATA
s panTro4.chr3                623274 10 - 202329955 cattataata
i panTro4.chr3             N 0 C 0
s nomLeu3.chr11            120754873 10 + 123690457 cattataata
i nomLeu3.chr11            N 0 C 0

a score=744485.000000
s hg38.chr3_KI270935v1_alt        10 1481 +    197351 ---AAAACCTTTAAATGCTCTGAGTGCCCAGCGTCAGCATGGTGATAACATACATACGAGGGAATATTGTGCAGCTGCAGTTAGTTCTTATTACATTTCACAGGCATCTTAAATGCTTTGTGAACACCGGTGCATAGATTTTTTTGTTTGGTATAGATGGCAATGATTAGATGGGTG-AAATAATAAAAAAAA-TGGACATATAATTTTAAAAATATTGAGTGACAGAAAAAAATGAAAAAATG-TTAAAGAACTTTTTGGTTATGATATTATCACTAAAAGGCCGTGTCTCCTTGCTCCCTTCTTTGGGGACGGTTCTGGGCTTGCCTGGCCCGTGGGTGGGAATTGTGG----TGCTCCAAGTGCCTTCAGCTGCTGCTGGGGTCCCAGGAGCCCAGCCTAGGTGTTCTTCCATCCTCACCACCCCATGGCCTCCATGGAGCCCCAC-GGCAGCCTCAGGAAGGAGGGCAGTATCGTCAGAACACAGTCCTCATGGACCCCCCAAGAGACCCTTGGGCAGAATGCCCCATCCCACCCAGGTCCAGCTTCACTCAGCACGTAAACAGGAACACGGCTGCAGGCAGGCTCCACGCACCCCGTCCCCAGGGAAGCCGCAGCCCTCGTCCCACGTATCCCGGGCAGGCATCTGTAACTGAGGGCTGCGTGGTCGGGTGAGCAGCGAGGCACATGCTGGCTGGGCGGGGAGGGGCGGCCCTGAGTGGTCGTCTTGCTCAGTGCTAGAGGGGCTCTGAGCCGAAGGTCTGAGGGtcctggagctgccatggcagatccccacagtctcggcagctcaaaacaacagggactcattctctccccgctcagcagggaggggtctgaaatc---gagtccatgggccgtgctccctccagaggctccaggggaggaccctgccacctccaccagcttctgtggctccaggcgtccctgggccgcggccacaatgctgcacctctgcctcggtctccaggcgacctcctcctctgtctgcgtctaacctccctctg-----------------------------------------------------------------cctctgtgtaaggacacttgccgtgcatgtagggccaacgagttaatccagaatgacctccttatctcaagatctttaacttaaacacagccacaaagacctgcctcctatttgaagagaggttctctgcacagttccagggtcaggaggtgaacaccAGGTGGCCCAGCCTCAGCCACCCCAGTGATGATGTGTGAGGTTTCAGAACAGCTGTGCTGCCCTGTTAGGAGCTATACACGCAGAAAGGCAACTCCGCCAGCGTCAGGGGTGCCGGATGCATGC-AGGATCAGAAGGCGTCGGATTTCCCAGGGAAGCTGGGGAGCAAGGATCCTGCACCAAGGGAGGCAGGAGGCCGGAGA----------------------CCAGCCCAGGCCCAGTCCAGGAGGAGCCTGGCCAGGAGTCCCACCAAAGCCACTGGAGCCTCC-GTGACCCAGCCCTGGAGGGTCAGCACTG--------TCCCTCAAACGGATTCT
s panTro4.chr3                623284 1481 - 202329955 ---aaaacctttaaatgctctgagtgcccagcatcagcatggtgataacatacatacgaaggaatattgtgcagcTGCAGTTAGTTCTTATTACATTTCACAGGCATCTTAAATGCTTTGTGAACACCGGTGCATAGATTTTTTTGTTTGGTATAGATGGCAATGATTAGATGGGTG-AAATAATAAAAAAAAATGGACATATAATTTTAAAAATATTGAGTGACAGAAAAAAATGAAAAAATG-TTAAAGAACTTTTTGGTTATGATATTATCACTAAAAGGCCGTGTCTCCTTGCTCCCTTCTTTGGGGACGGTTCTGGCCTTGCCTGGCCCGTGGGTGGGAATTGTGG----TGCTCCAAGTGCCTTCAGCTGCTGCTGGGGTCCCAGGAGCCCAGCCTAGGTGTTCTTCCGTCCTCACCACCCCATGGCCTCCATGGAGCCCCAC-GGCAGCCTCAGGAAGGAAGGCAGTATCGTCAGAACACAGTCCTCATGGACCCCCCAAGAGACCCTTGGGCAGAATGCCCCATCCCACCCAGGTCCAGCTTCACTCAGCACCTAAACAGGAACACGGCTGCAGGCAGGCTCCACGCACCCCATCCCCAGGGAAGCCGCAGCCCCCGTCCCACGTATCCTGGGCAGGCATCTGTAACTGAGGGCTGCGTGGTCGGGTGAGCAGCGAGGCACATGCTGGCTGGGCGGGGAGGGGCAGCCCTGAGTGGTCGTCTTGCTCAGTGCTGGAGGGGCTCTGAGCCGGAGGTCTGAGGGtcctggagctgccatggcagatccccacagtctgggcagctcaaaacaacagggactcattctctccccgctcagcagggaggggtctgaaatc---gagtccacgggccgtgctccctccagaggctccaggggaggaccctgccacctccaccagcttctgtggctccaggcgtccctgggccgcggccgcactgctgcacctctgcctcggtctccaggcggcctcctcctctgtctgcgcctaacctccctctg-----------------------------------------------------------------cctctgtgtaaggacacttgccgtgcatgtagggccaacg-gttcatccagaatgacctccttatctcaagatctttaacttaaacacagccacaaagacctgcctcctatttgaagagaggttctctgcacagttgcagggtcaggaggtgaacaccAGGTGGCCCAGCCTCAGCCACCCCAGTGAGGACGTGTGAGGTTTCAGAACGGCTGTGCTGCCCTGTTAGGAGCTATACACGCAGAAAGGCAACTCCGCCAGCGTCAGGGGTGCGGGATGCATGC-AGGATCAGAAGGTGTCGGATTTCCCAGGGAAGCTGGGGAGCAAGGATCCTGCACCAAGGGAGGCAGGAGGCCGGAGA----------------------CCAGCCCAGGCCCAGTCCAGGAGGAGCCTGGCCAGGAGTCCCACCAAAGCCACGGGAGCCTCC-GTGACCCAGCCCTGGAGGGTCAGCACTG--------TCCCTCAAACGGATTCT
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199646266 1569 + 202140232 ---aaaacctgtaaatactctgcgtgcccagcgtcagcatgatggtaacgtgcatacgagggaatattgtgcggcTGCAGTTAGTTCTTATTACATTTCATAGGCATCTTAAATGCTTTGTGAACACTGGTGCATAGATTTTTTTGTTTGGTATAGATGGCAATGATTAGATGGGCA-AAATAATAAA------TGGACATGTAATTTAAAAAATACTGAGTGACAGAAAAAAATGAAAAAATGTTTAAAGAACTTTTTGGTTATGATATTATCACTAAAAGGCCCTGTCTCCTTGCTCCCTTCTTTGGGGACGGTTCTGGCCTTGCCTGGCCCGTGGGTGGGAATTGTGGTGCTTGCTCCAAGTGCCTTCAGCTGCTGCTGGGGTCCCAGGAGCCCAGCCTAGGTGTTCTTCTGTCCTCATCACCCCATGGCCTCCGTGGAGCCCCACGGGCAGCCTCAGGAAGGAGGGCAGTATCATCAGAACAGAGTCCTCGTGGA-CCCCCAAGAGACCCTTGGACAGAATGCCCCATCCCACCCACGTCCAGCTTCACTCGGCACCTAAACAGGAGCATGGCCGCAGGCAGGCTCCACGCACCCCATCCCCAGGGAAGCCGCAGCCCCCGTCCCACGCATCCCGGGCAGGCATCTGTAACTGAGGGCAGTGTGGTCGGGTGAGCAGCAAGGCACATGCCAGCTGGGCGGGGAGGGGCGGCCCTGAGTGGTCTTCTTGCTCAGTGCTGGAGGGGCTCTGAGCCGAGGGTCCGAGGGtcctggaactgccatggcagatccccacagcctgggcaactcgaaacaacaggggctcattctctccccgctcagcagggaggggtctgaaatcaaggagtccatgggccgtgctccctccagaggctccaggggaggaccctcccacctccgccagcttctgtggctccaggcatccctgggccgcggctgcattgctgcacctctgcctcagtctccaggaggcctcctcctctgtctgcatctaacctccctctgcctctgtgtaaggacacttgccatgcgtttagggccaatgggttaatccagaatgacctccttatcctctgtgtaaggacacttgccatgcatttagggccaacgggttaatccagaatgacctccttatctcaagctctttcacttaatcatggccacaaagacacgcctcctatctgaagagaggttctgtgcacagttccagggtcaggaggtgaacaccCAGTGGCCCAGCCTTAGCCACCCCAGTGAGGACGTGCGAGGTTTCAGAACGGCTGTGCTGCCCTGTTAGGAGTTATATACGAAGAAAGGCAACTCCGCTGGCGTCAGGGGTGCTGGATGCGTGC-GGGATCAGATGGCATCAGATTTCCCAGGGAAGCTGGGGAGCAAGGGCCCTGCACCAAGGGAGGCAGGAGGCCGGAGA-----------ccagcccaggcccagcccaggcccagtccaggAGAAGCCTGGCCAGGAGTCCCATCAAAGCCACTGGAGCCTCCAGTGACCCAGCCCTGGAGGGTCAGCACAGCCTGACCATCCATCAAATGGATTCC
i ponAbe2.chr3             N 0 C 0
s nomLeu3.chr11            120754883 1492 + 123690457 aagaaaacctgtaaatactctgagtgcccagcatcagcatggtgataatgtacatatgagggaatattgtgcagcTTCAGTTAGTTCTTATTACATTTCATAGGCATCTTAAATGCTTTGTGAACACCGGTGCATAGATTTTTTTGTTTGGTATAGATGGCAATGATTAGATGGGTGCAAGTAATTAAAAAA--TGGACATATAATTTTAAAAATATTGAGTGACAGAAAAAAAGGAAAAAATG-TTAAAGAACTTTTTGGTTATGATATTATCACTAAAAGGCCCTGTCTCCTTGCTCCCTTCTTTGGGGACGGTTCTGGCCTTGCCTGGCCCGTGGGTGGGAATTATGG----TGCTTCAAGTGCCTTCAGCTGCTGCT-GGGTCCCAGGAGCCCAGCCTAGGTGTTCTTCCGTCCTCACCACCCCATGGCCTCCATGGAGCCCCACGGGCAGCCTCAGGAAGGAGGGCAGTATCGTCAGAACAGAGTCCTCGTGGA--CCCCAAGAAACCCTTGGACAGAATGCCCCATCCCACCCAGGTCCAGCTTCACTCAGCACCTAAACAGGAGCACGGCTGCAGGCAGGCTCCACGCACCCCATCCCCAGGGAAGCCGCAGCCCCTGTCCCATGTATCCCGGGCAGGCATCTGTAACTGAGGGCAGCGTGGTCGGGTGAGCAGCGAGGTACACGCTGGCTGGGCGGGGAGGGGTGGCCCTGAGCAGTCATCTTGCTCAGTGCTGGAGGGGTTCCGAGCCGAAGGTCCGAGGGtcctggaactgccatggcagatccccacagcctgggcagctcgaaacagcaggggctcattctctccccactcagcagggaggggtctgaaatcaaggagtccacgggctgtgctccctccagaggcttcaggggaggaccctcccacctccgccagcttctgtggctccaggcgtccctgggccgcagccgcattgctgcacctctg-----------------ccttctgctctgtctgcgtctaacctccctctg-----------------------------------------------------------------cctctgtgtaaggacacttgccatgcatttagggccaacgggttaatccagaatgacctccttatctcaagatctttaacttaatcacagccacaaagacctgcctcctatttgaagagaggttctgtgcatggttccagggtcaggaggtgaacacctggtggcccaGCCTCAGCCGCCCCAGTGAGGACGTGCGAGGTTTCAGAACGGCTGTGCTGCCCTGTTAGGAGTTATACACGCAGAAAGGCAACTCCGCCAGCATCAGGGGTGCTGGATGCGTGCGGGGATCAGATGGCGTTGGATTTCCCAGGGAAGCTGGGGAGCAAGGGTCCTGCATCAAGGGAGGCAGGAGGCCAGAGAccagcccaggcccagcccaggcccagcccaggcccagcccaggAGGAGCCTGGCCAGGAGTCCCACCAAAGCCACTGGAGCCTCCAGTGACCCAGCCCTGGAGGGTCAGCACTG--------TCCCTCAAACGGATTCC
i nomLeu3.chr11            C 0 C 0

a score=2321.000000
s hg38.chr3_KI270935v1_alt      1491 9 +    197351 TCACACACA
s panTro4.chr3                624765 9 - 202329955 TCACACACA
i panTro4.chr3             C 0 I 480
s nomLeu3.chr11              2933283 9 - 123690457 TCGCACACA
i nomLeu3.chr11            n 0 C 0
e ponAbe2.chr3             199647835 0 + 202140232 C

a score=7073.000000
s hg38.chr3_KI270935v1_alt      1500 29 +    197351 GGTCTCTCTGTCTGTGGGGGCTGCAGGGC
s panTro4.chr3                625254 29 - 202329955 GGTCTCTCTGTCTATGGGGGCTGCAGGGC
i panTro4.chr3             I 480 C 0
s nomLeu3.chr11              2933292 29 - 123690457 GGTCTCGCTGTCTGTGGAGGCTGCAGGCC
i nomLeu3.chr11            C 0 n 0
e ponAbe2.chr3             199647835  0 + 202140232 C

a score=1855.000000
s hg38.chr3_KI270935v1_alt      1529 19 +    197351 CAGTGCCTGAGGAGCCCGG
s panTro4.chr3                625283 19 - 202329955 CAGTGCCTGAGGAGCCCGG
i panTro4.chr3             C 0 C 0
e ponAbe2.chr3             199647835  0 + 202140232 C
e nomLeu3.chr11              2933321  0 - 123690457 I

a score=429513.000000
s hg38.chr3_KI270935v1_alt      1548 851 +    197351 ACTTCACACAGGGGTCTCTCTGTCTGTGGGGGCTGCAGAGCCGGTGCCTGGGGAGCCCGGACTGCCGGAAACCTTTGCGGTGGGAGGCTGCAGATGGGACTTCTTGGCCTGTGTTTATGTGGAGCCCAGGCTGCGGGCACCACAGCCAGGCACAGGTCAGGGGTAAGTTGTGGGTGATGTAAGGACTAGAAGCGTAAGTAATGGCCTGACCCCCATGTCCTGGCTGTGCTGTGCGGTGGGAAAGACATGGGCTCCGGCGGCTGCTGGGGATGGCCTGGCTTGCACCTGCTGGGTCCCCCCCTGGCCACCAGCCTCACCCAAGGGCAGTTGGTGACTGCCTGCCTCACTCCTGCCAACCCTCAGGGGCCTAGGAGTCCTGCGTGGTGGGTCTAGGAACCATGCTGGAGGACAGGCCTGTGCCAGGGCCACCAGGATGTCTATGGCAGGAGCCGGTGCTGGCGAACCCCACACCTTGAGCCCCAGAGCCAGGATCCTCAGCCCAGGAAAGGGACCAGAGGCGGGAAAACCACACGGCAAAGGCTGTCCCGTGAGGTCACGGCTCCGTCACCGCTGCCCACACACGGAAGGCAGCCGCGGCTGGGTGAAGCCATCTTCACAGACATGCCGTCCTTGAGGCTCTCACACATGCACACAGACGCTCCGTCCTCTCC--CACCCGCCCCC-CCGCCACCCCGGGCAGGCCAGGAAGTCCCATCTGGGGCCTCCCACCCCGAGGGTTGCCGTCAGTCCGTG-TGCCCAGGCATCGGGGCCTGAAGCCTCCACAGACAGCGAGACCTGTGTACGAAGCAGACTCTGTCCTAGGGACAGTGCTGACCCTACAAGGCTGGGTCAC
s panTro4.chr3                625302 853 - 202329955 ACTTCACACACAGGTCTCCCTGTCTGTGGGGGCTGCAGGGCCGGTGCCTGGGGAGCCCGGACTGCCGGAAACCTTTGGGGTGGGAGGCTGCAGATGGGACTTCCTGGCCTGTGCTTATGTGGAGCCCAGGCTGCGGGCACCACAGCCAGGCACAGGTTAGGGGTAAGTTGTGGGTGATGTAAGGACTAGAAGTGTAAGTAATGGCCTGACCCCCATGTCCTGGCTGTGCTGTGCAGTGGGAAAGACATGGGCTCCGGCGGCTGCTGGGGATGGCCTGGCTTGCACCTGCTGGGTCCCCCCCTGGCCACCAGCCTCACCCAAGGGCAGTTGGTGACTGCCTGCCTCACTACTGCCAACCCTCAGGGGCCTAGGAGTCCTGCGTGGTGGGTCTAGGAACCATGCTGGAGGACAGGCCTGTGCCAGGGCCACCAGGATATCTATGGCAGGAGCTGGTGCTGGCGAACCCCACACCTTGAGCCCCAGAGCCAGGCTCCTCAGCCCAGGAAAGGGATCAGAGGCGGGAAAACCACACGGCAAAGGCTGTCCCATGAGGTCACGGCTCCGTCACTGCTGCCCACACACGGAAGGCAGCCGCGGCTGGGAGAAGCCATCTTCACAGACATGCCGTCCTTGAGGCTCTCACACATGCACACAGACGCTCCGTCCTCTCCCACACCCGCCCCC-CCGCCACCCCGGGCAGGCCAGGAAGTCCCATCTGGGGCCTCCCACCCCGAGGGTTGCCGTCAGTCCGTG-TGCCCAGGCATCGGGGCCTGCAGCCTCCACAGACAGCGAGACCTGTGTGCGAAGCAGACTCTGTCCTAGGGACAGTGCTGACCCTCCAAGGCTGGGTCAC
i panTro4.chr3             C 0 I 132
s ponAbe2.chr3             199647835 846 + 202140232 ACTTCACACACAGGTCTCCCAGTCTGTGGGGGCTACAGGGCCGGTGCCTGGGGAGCCCGGACTGCCGGAAACCTTTGGGGTGGGAGGCTCCAGATGGGACTTCCTGGCCTGTGTTTATGTGGAGCCCAGGCTGCAGGTGCCACAGCCAGGCACAGGTTAGCGGTGAGTTGTGGGTGATGTAGGGACTAGAAGCTCAAGTAATGGCCTGACCCCCATGTCCTGGCTGTGCTGTGCGGTGGGAAAGACATGGGCTCGGGCAGATGCTGGGGGTGGCCCGGCCTGCACCTGCTGGGTCCACCCCTGGTCACCAGGCTCACCCAAGGGCAGTTTGTGACTGCCTGCCTCACTCCTGCTGACTCTCAGGGGCCTAGG-GTCCCACGTGGGGGGTCTAGGAACCATGCTGGAGGATGTGCCTGTGCCAGGGCCACCAGGATATCTATGGCAGGAGCTGGTGCTGGTGAACCCCACACCTTGAGCCCCAGAGCCAGGCTCCTCAGCCCAGGAAAGGGATCAGAGGTGGGAACACCACATGGCAAAGGCTGTCCCGTGCAGTCATGGCTCCACCACCACTGCCCACACACAGAAAGCAGCCGCGGCTGGGAGAAGCCATCTTCACAGACATGCCATCCTTGAGGCTCTCACACGTGCGCACAGACACTCTGTCCTCTCC------CACCCCC-CCACCACCCCAGGCAGGCCAGGAAGTCCCATCTGGGGCCTCCCACCCCGAGGGTTGCCGTCAGTCCGTG-TGTCCAGGCATCGGGGTCTGCAGCCTCCACAGACAGCGAGACCTGTGTGTGAAGCAGAATCCATCCTAGGGACAGTGCTGACCCTCCAAGGCTGGGTCAC
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120756375 847 + 123690457 ACTTCACACACAGGTCTCCCTGTCTGTGCGTGCTGTAGGGCTGGTGCCTGGGGAGCCGGGACTGCCAGAAACCTTCAGGGTGGGAGGCTCCAGATGGGACTTCCTGGCCTGTGTTTATGTGGAGCCCAGGCTGCAGGTGCCACAGCCAGGCACAGGTTAGGGGTGAGTTGTGGGTGATGTAGGGACTAGAAGCACAAGTAATGGCCTGACCCCCATGTCCTGGCTGTGCTGTGTGGTGGGAAAGACACAGGCTCCGGTGGCTGCTGAGGGTGGCCTGGCCTGCACCTGCTGGGTCCACCCCTGGCCACCAGGCTCACCCAAGGGCAGTTGGTGACGGCCTGCCTCACTCCTGCTGACCCTCAGGGGCCTAGGGGTCCCGCGTGAGGGGTCTAGGAACCATGCTGGAGGACGTGCCTGTGCCAGGGCCACCAGGATGTCTATGGCAGGAGCCGGTGCTGGCGAACCCCACACCTTGAGCCCCAGAGCCAGGCTCCTCAGCCTAAG-AAGGGATCAGAGGCGGGAAAACCACATGGCAAAGGCTGTCCCGTGCAGTCCTGGCTCCACCACCACTGCCCACACACGGAAGGC-GCCGCGGCTGGGAGAAGCCATCTTCACAGACATGCCATCCTTGTGGCTCTCACGCATGTGCACAGACGCTCCGTCCTCTCC------CACCCCCAACCCCACCCCGGGAGGGCCAGGAAGTCCCATCTGGGGCCTCCCACCCTGAGGGTTGCCTTCAGTCCGTGCTGCCCAGGCATCGGGGCCTGCAGCCTCCACAGACAGCGAGACCTGTGTGCGAAGCAGAATCCATCCTAGGGACAGTGCTGACCCTCCAAGGCTGGGTCAC
i nomLeu3.chr11            C 0 C 0

a score=414747.000000
s hg38.chr3_KI270935v1_alt      2399 793 +    197351 TGGAGGCTCCCCGGGTCCAGTGGCTTTGGTGGGACTCCTGGCCAGGCTCCTCCTGGGCCGGGCTGGTCTCCGGCCTCCTGCCTCCCTTGGTGGAGCACCCTTGCTCCCCAGCACCTCCCAGGTTCACACAGCTCCTCCCTGGGGCTGCGCACTGACCCAGGGGCAGGAGGTGGGCCATCCTCTCGGTGGACTGAAGACCTTGTCCGAAGGGAAAGCAGGGCCGGCCCAAGGCCTGGCTGGAAGAGTGGGTCTTGGTGGCAAAGGCGGCCCGTGGGGGCAGCCCACGCGAATGCTTCCCCGGCGCCCTGAGCCCCTGACCGCGGCTGAGCCTGCGGTACTCTGGCCCCTCTCGTGGAAAGATGACCTGGGTCTACCATGCTCAGTATCACCCAAAAATTCCTACAGAAGTCTCTCGGGACAAGAAAAGGCCTTCTTCCCTCCCTCCTCCTTTCCTCTTCCTTTCTTTCATCAGGG---AACAGCTTCCGGCTGCCTGCACTGTTTGGGCGCCGTCATAAGGAGCCGTGACGGCCTTCACAGAGCTCCGGGGCTCACGGGTGTGGCTGACCTG-CCACAAATGGGGCGACAGAGGAGAGGGAGGGTCGGGCACCGATGGCTCAGGAGGGAAGAGATCCCTTCTGTATGGGGAGACGGGGGCTTCCTGGAGGGCACTGGAGCGAGGGGCTCACCAGAGTGAGACATCCAAGGGATCTGGGGGACCGGCCATGGGACACTGCGGTCCCACGTGGCTCCTGGATGTGCTGTGTGTTTGCTGAGCTGGAGGGGACGGGGAGCC
s panTro4.chr3                626287 793 - 202329955 TGGAGGCTCCCCGGGTCCAGTGGCTTTGGTGGGACTCCTGGCCAGGCTCCTCCTGGGCTGGGCTGGTCTCCGGCCTCCTGCCTCCCTTGGTGGAGCACCCTTGCTCCCCAGCACCTCCCAGGTTCACACAGCTCCTCCCTGGGGCTGCGCACTGACCCAGGGGCAGCAGGTGGGCCATCCTCTCCGTGGACTGAAGACCTTGTCCGAAGGGAAAGCAGGGCCGGCCCAAGGCCTGGCTGGAAGAGTGGGTCTTGGTGGCAAAGGCGGCCCGTGGGGGCAGCCCACGCGAATGCTTCCCCGGCGCCCTGAGCCCCTGACCGCGGCTGAGCCTGCAGTACTCTGGCCCCTCTCATGGAAAGATGACCTGGGTCTACCATGCTCAGTATCACCCAAAAATTCCTACAGAAGTCTCTCGGGACAAGAAAAGGCCTTCTTCCCTCCCTCCTCCTTTCCTCTTCCTTTCTTTCATCAGGG---AACAGCTTCCGGCTGCCTGCACTGTTTGGGCGCCATCTTAAGGAGCCGTGACAGCCTTCACAGAGCTCTGGGGCTCACGGGTGTGGCTGACCTG-CCACAAATGGGGCGACAGAGGAGAGGGAGGGTCGGGCACCGATGGCTCAGGAGGGAAGAGATCCCTTCTGTATGGGGAGACGGGGGCTTCCTGGAGCGCGCTGGAGCGAGGGGCTCACCAGAGTGAGACATCCAAGGGATCTGGGGGACCGGCCATGGGACACTGTGGTCCCACGTGGCTCCTGGATGTGCTGTGTGTTTGCTGAGCTGGAGGGGACGGGGAGCC
i panTro4.chr3             I 132 C 0
s ponAbe2.chr3             199648681 795 + 202140232 TGGAGGCTCCCCGGGTCCAGTGGCTTTGGTGGGACTCCTGGCCAGGCTCCTCCTGGGCTGGGCAGGTCTCTGGCCTCCTGCCTTCCTTGGTGGAGCACCCTTGCTCCCCAGCACCTCCCAGGTTCACACAGCTCCTCCCTGGGGCTGCGCACTGACCCAGGGGCAGGAGGTGGGCCATCCTCTCCATGGACTGAAGACCTTGTCCGAAGGGAAAGCAGGGCCGGCCCAAGGCCTGGCTGGAAGAGCCGGTCTTGGTGGCAAAGGCGGCTCGTGAGGGCAGCCCATGCAAATGCTTCCCTGGGGCCCTGAGCCCCGGACCGTGGCTGAGCCTGCTGTACTCTGGCTCCTCTCATGGAAAGATGACCTGGGTCTACCAGGCTCAGTATCACCCAAAAATTCCTACAGAAGTCTCTTGGGACAAGAAAAGGCCTTCTTCCCTCCCTCTTCCTTTCCTCTT-CTTTCTTTCATCAGGGAAAAACAGCTTCCAGCCGCCTGCACTGTTTGGGCACCGTCATAAGAAGCCGTGACGGCCTTCGCAGAGCTCCGGGGCTCACGGGTGTGGCTGACCTG-CCACAAATGGGGCGACAGAGGAGAGGGAGGGTCGGGCACCGATGGCTCAGGAGGGAAGAGATCCCTTCTGTATGGGGAGATGGGGGCTTCCTGGAGGGAGCTGGAGCGAGGGGCTCACCAGGGTGAGACATCCAAGGGAACTGGCGGACCGGCCATGGGACAGTGTGGTCCCACGTGGCTCCTGGATGCGCTGTGTGTTTGCTGAGCTGGAGGGGACAGGGAGCC
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120757222 787 + 123690457 TGGAGGCTCCCCGGGTCTAGTGGCTTTGGTGGGACTCCTGACCAGGCTCCTTCCGGGCTGGGCAGGTCTCCGGCCTCCTGCCTTCCTTGATGGAGCACGCTTGCTCCCCAGCACCTCCCAGGTTCACACAGCTCCTCCCTGGGGCTGCGCACTGACCCAGGGGCAGGAGGTGGGCCATCCTCTCCGTGGACTGAAGACCTTGTCCGAAGGGAAAGCAGGGCTGGCCCAAGGCCTGGCTGGGAGAGCCGGTCTTGGTGGCAAAGGCGGCTCGTGGGGGCAGCCCACGCAAATGCTTCCC-GGCTCCCTGAGCCCCTGACCGCGGCTGAGCCCGCTGTGCTT--GCTCCTCTCATGGAAAGATGACCTGGGTCTACCATGCTCAGTATCACCCAGAAATTCCTACAGAAGTCTCTTGGGACAAGAAAAGGCCTTCTTCCCTCCCTCCTCCTTTCCTCTTCCTTTCTTTCATCAGGG---AACAGC-TCCGGCTGCCTGCACTGTTTGGGCACTGTCATAAGAAGCCGTGACGGCCTTCACAGAGCTCCAGGGCTCACGGGTGCAGCTGACCTGCCCACAAATGAGGCGACAGAGGAGAGGGAGGGTCGGGCACCGATGGCTCAGGAGGGAAGAGATCCCTTCTGTATGGGGAGACGGGGGCTTCCTGGAGGGAGCCGGAGCAAGGGGCTCACCAGGGTGAGACATCCAA-GGACCTGGGGGACCAGCCATGGGACACGGTGGTCCCACGTGGCTCCTGGACGCGC--TGTGTTTGCTGAGCTGGAGGAGACGGGGAGCC
i nomLeu3.chr11            C 0 C 0

a score=31061.000000
s hg38.chr3_KI270935v1_alt      3192 133 +    197351 CATGT------------------GTGGGAGAGGGAGAGGCCATGCACGCCCTGAGTCGGGCTTTACAAAAACCTTCTGGGGGCAGCAGGAGAGGAGCCACGCAGAGGCAGAGCCAGGGAGAGGCGGTGGGGTAGTGAGGGGGATGTCGGGG
s panTro4.chr3                627080 133 - 202329955 CATGT------------------GTGGGAGAGGGAGAGGCTATGCACACCCTGAGTCGGGCTTTACAAAAACCTTCTGGTGGCAGCAGGAGAGGAGCCACGCAGAGGCAGAGCCAGGGAGAGGCGGTGGGGTAGTGAGGGGGATGTCGGGG
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120758009 150 + 123690457 CACGTGCCAAACGCGGGCACCTCGCGGGAACGGGAGAGGCCATGCACGCCCTGAGTCCGGCTTTACAAAAACCTTCTGGCAGCAGTAGGAGAGGAGACACACAGAGGCAGAGCCAGGGAGAGGCGGTGGGGTAGTGA-GGGGATGTTGGCG
i nomLeu3.chr11            C 0 C 0
e ponAbe2.chr3             199649476   0 + 202140232 C

a score=65565.000000
s hg38.chr3_KI270935v1_alt      3325 136 +    197351 TGCACGGGTTAGGAGACCCCCGAGTCCTGGGACCTGCATGCTGATAGTCAAGGTTGCAGAGGCGGCTGCTGTGGTGACCACAGGGCAGGGAGAGGCAGTGGGGTAGTGAGGGAATGTCGGGGTGCACAGCACCAGA
s panTro4.chr3                627213 136 - 202329955 TGCACGGGTTAGGAGACCCCCGAGCCCTGGGACCTGCATGCTGATGGTCAAGGTTGCAGAGGCGGCTGCTGTGGTGACCACAGGGCAGGGAGAGGCGGTGGGGTAGTGAGGGGATGTCGGGGTGCACAGCACCAGA
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199649476 136 + 202140232 TGCACGGGTTGGGAGACCCCTGAGCCCTGGGACCTGCGCTCTGGTGGTCAAGGTTGCACAGGCGGTGGCTGTGGTGACCACAGGGCAGGGAGAGGTGGTGGGGTAGTGAGGGGATGTCGGGGTGCATGGCACCAGA
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120758159 127 + 123690457 TGCACGGGTTGGGAGACCCCCGAGCCCTGGGACCTGCATGCTGATGGTCAAGGTTGC---------TGCTGTGGCGACCACAGGGCAGGGAGAGGAGGTGGGGTAGTGAGGGGATGTCAGGGTGCAGAGCGCCAGA
i nomLeu3.chr11            C 0 C 0

a score=3054.000000
s hg38.chr3_KI270935v1_alt      3461 4 +    197351 CCCT
s panTro4.chr3                627349 4 - 202329955 CCCT
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199649612 4 + 202140232 CCCT
i ponAbe2.chr3             C 0 I 7370
s nomLeu3.chr11            120758286 4 + 123690457 CCCT
i nomLeu3.chr11            C 0 I 8217
s papAnu2.chr6                 25618 4 + 174439528 CCAT
i papAnu2.chr6             N 0 C 0

a score=41554.000000
s hg38.chr3_KI270935v1_alt      3465 22 +    197351 CCCAGATCTTCTGATTCAGTCC
s panTro4.chr3                627353 22 - 202329955 CCCAGATCTTCCGATTCAGTCC
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199656986 22 + 202140232 CCCAGATCTTCCGATTCAGTCC
i ponAbe2.chr3             I 7370 C 0
s nomLeu3.chr11            120766507 22 + 123690457 CCCAGATCTTCTGATTCAGTCC
i nomLeu3.chr11            I 8217 C 0
s macFas5.chr6             179960741 22 - 181584905 CCCAGACCTTCCGATTCAGTCC
i macFas5.chr6             N 0 C 0
s papAnu2.chr6                 25622 22 + 174439528 CCCAGACCTTCCGATTCAGTCC
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89530590 22 -  91010382 CCCAGACCTTCCGATTCAGTCC
i chlSab2.chr4             N 0 C 0

a score=61272.000000
s hg38.chr3_KI270935v1_alt      3487 27 +    197351 TGGGGggaccctaccccagatcttcca
s panTro4.chr3                627375 27 - 202329955 TGGGGGGACCCTACCCCAGATCTTCCA
i panTro4.chr3             C 0 I 286
s ponAbe2.chr3             199657008 27 + 202140232 TGGAGggaccctaccccagatcttcct
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120766529 27 + 123690457 TGGGGggaccctaccccagatcttcct
i nomLeu3.chr11            C 0 C 0
s macFas5.chr6             179960763 27 - 181584905 TGGGGggaccctaccccagatcttctg
i macFas5.chr6             C 0 C 0
s papAnu2.chr6                 25644 27 + 174439528 TCGGGGGACCCCACCCCAGACCTTCTG
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89530612 27 -  91010382 TGGGGggaccctaccccagatcttctg
i chlSab2.chr4             C 0 C 0
s calJac3.chr2                170653 27 - 204313951 TGGAGggaccctaccccagaacttcca
i calJac3.chr2             N 0 C 0

a score=521162.000000
s hg38.chr3_KI270935v1_alt      3514 245 +    197351 attcagtcctggttcggcctgagaatttgcatttttaacatgtccaggGACCACAGTTTGAAAACCTCCACGGCTGACATGTAATGGGATGACATGGTCCAATAAATGAAGGAAAAATAACAGG-----------TGGCAACCTCAGGCAGCTTCATCCCAACCAGTAAGAAAGTAAAT-------CCTTTTGTAAACTAAGAGGAAGTATTAATATGGGCGTTTGAGCAAACATTTAAGTGTTAGAACAAAGAATTAAAAAC
s panTro4.chr3                627688 245 - 202329955 attcagtcctggttcggcctgagaatttgcgtttctaacatgtccaggGACCACAGTTTGAAAACCTCCACGGCTGACATGTAATGGAATGACATGGTCCAATAAATGAAGGAAAAGTAGCAGG-----------TGGGAACCTCAGGCAGCTTCATCCCAACCAGTAAGAAAGTAAAT-------CCTTTTGTAAACTCAGAGGAAGTATTAATATGGGCGTTTGAGCAAACATTTAAGTGTTAGGACAAAGAATTAAAAAC
i panTro4.chr3             I 286 C 0
s ponAbe2.chr3             199657035 244 + 202140232 attcagtcctggttcggcctgagaatttgcatttctaacgtgtccaggGACCACAGCTTGAAAACCTCCATGGCAGACATGTAATGGGATGACATAGTCCAATAAATG-AGGAAAAATAACAGG-----------TGGCAACCTCAGGCAGCTTCATCCCAACCATTAAGAAAGTAAAT-------CCTTTTGTAAACTAAGAGGAAGTATTAATGTGGGCATTTGAGCAAACATTTAAGTGTTAGGACAAAGAATTAAAAAT
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120766556 243 + 123690457 attcagtcctggttcggcctgagaatttgcatttctaacatgtccaggGACCACAGCTTGAAAACCTCCATGGCAGACATGTAATGGGATGACATGGTCCAATAAATGAAGGAAAAATAACAGG-----------TGGCAACCTCAGGCAGCTTCATCCCAACCAGTAAGAAAGTAAAT-------CCTTTTGTAAACTAAGAGGAAGTATTAATACAGGCGTTTGAGCAAATATTT--GTGTTAGGACAAAGAATTAAAAAC
i nomLeu3.chr11            C 0 C 0
s macFas5.chr6             179960790 231 - 181584905 attcagtcctgattcggcctgagaatttgcatttctaacatgtccaggGACCACAGTTTGAAAACCTCC-------------AATGGCA-GACATGGTCCAATAAATGAAGGAATAATAACAGG-----------TGGCAACCTCAGACAGCTTCATCCCAACCAGTAAGAAAGTAAAT-------CCTTTTGTAAACTAAGAGGAAGTATTAATATGGACGTTTGAGCAGACATTTAAGTGTCGGGACAAAGAATTAAAAAC
i macFas5.chr6             C 0 C 0
s papAnu2.chr6                 25671 231 + 174439528 ATTCAGTCCTGAAtcggcctgagaatttgcatttctaacatgtCCAGGGACCACAGTTTTAAAACCTCC-------------AATGGCA-GACATGGTCcaataaatgaaggaataataACAGG-----------TGGCAACCTCAGACAGCTTCATCCCAACCAGTAAGAAAGTAAAT-------CCTTTTGTAAACTAAGAGGAAGTATTAATATGGACGTTTGAGCAGACATTTAAGTGTCAGgacaaagaattaaaaac
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89530639 231 -  91010382 attcagtcctgattcggcctgagaatttgcatttctaacatgtccaggGACCACAGTTTGAAAACCTCC-------------AATGGCA-GACATGGTCCAATAAATGAAGGAATAATAACAGG-----------TGGCAACCTCAGACAGCTTCCTCCCAACCAGTAAGAAAGTAAAT-------CCTTTTGTAAACTAAGAGGAAGTATTAATATGGACGTTTGAGCAGACATTTAAGTGTCAGGACAAAGAATTAAAAAC
i chlSab2.chr4             C 0 C 0
s calJac3.chr2                170680 260 - 204313951 --tcagtcctggttaggcctgagaattggcatttctaacatgcccaggGACCACAGTTTGGAAACCTCTGTGGCAGACATGTAATGGGATGACACGGTCCGATAAACGGGGGAACAACAACAGGTGGAGACCCCCTGGCAACCTCAGGAAGCTTCATCCCAGCCAGTAAGAAAGTAAATCCCCAAGCCTTCTGAAAACTAAGAGT-AGTATTAACACGGGTGTTTGAGCAAACATTTAAGTGTTAGGACAAAGAATTAAAAGC
i calJac3.chr2             C 0 I 294

a score=945847.000000
s hg38.chr3_KI270935v1_alt      3759 436 +    197351 TAGCACAGGCACCCCTGAAGCATGATAGGATGGCAACAGAAGGGCTGATTTAGTTTCCAAGAAATAACTGACAGGCAGTG---TTGTGCGTGTGTCTACTACTTAGGAACCCAAAACAAACCTTCAGACCGTTTTCATGAGTACTGAGACCAAGAAAACCACTGGGCAGTGGGTGGTCTGGAAATGTAAATGTTGATGGTACTCCAGTAA----TGAGTCATGGAACAATGTTTCATATTGAAAATGTTTTTGTAAATGTGGGTTTCAAGGTTTCAAAGTGAACCCGTATGTGTTAGGAGAAAGGACACACCAAAGAAGTAAAATAATTGGGTCAATATAAAAAGAAAGTAGAATACTGCCCAGAGAGAAGATGTGGATAATTCCTAACACGGATCAAAGGCACCAAAAAGGTGAGCTGTGAGTAAGATATTCAGACCTGCAC
s panTro4.chr3                627933 430 - 202329955 TAGCACAGGCACCCCTGAAGCATGATAGGATGGCAACAGAAGGGCTGATTTAGTTTCCAAGAAATAACTGACAGGCAGTG---TTGTGCGTGT--CTACCGCTTAGGAACACAAAACAAACCTTCAGACCGTTTTCATGAGTACTGAGACCAAGAAAACCACTGGGCAGTGGGTGGTCTGGAAATGTAAATGTTGATGGTGCTCCAGTAA----AGAGTCATGGAACAATGCTTCATATTGAAAATGTTTTTGTAAATGTGGGTTTCAGGGTTTCAAAGTGAACCCATATGTGTTAGGAGAAAGGACACACCAAAGAAGTAAAATAATTGGGTCAATATAAAAAGAAAGTAGAATACTGCCCAGAGAGAAGATGTGGATAATTCCTAACACGGATCAAAGGCACCAAAAAGGTGAGCTGT----AAGATATTCAGACCTGCAC
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199657279 428 + 202140232 TAGCACAGGCACCCCTGAAGCATGATAAGTTGGCAACAGAAGGGCTGATTTAGTTTCCAAGAAATAACTGACAGGCAGTG---TTGTGTGTGTGTCTACTACTTAGGAACCCAAAACAAACCTTCAGACCATTTTCATGAATACTGAGACCAAGAAAACCACTGGGCAGTGGGTGGTCTGGAAATGTAAATGTTTATGGTACTCCAGTAA----TGAGTCATGGAACAATCTTTCATATTGAAAATGTTTTTGTAAATGTGGGTTTCAAGGTTTCAAAGTGAACCCCTATGTGTCaggagaaaggacaaaccgaagaagtaaaataattgggtcaatataa----aaagtagaatatttcccagagagaagatgtggataattcctaacacagatcaaaggcaccaaaaaggtgagctgt----aAGATATTCAGACCAGCAT
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120766799 431 + 123690457 TAGCACAGGCACCCCTGAAGCATGATAGGATGGCAACAGGAGGGCTGATTTAGTTTCCGAGAAATAACTGACAGGCAGTG---TTGTGTGTGTGTCTACTACTTAGGAACCCAAAATAAACCTTCAGACCGTTTTCATGAGTACTGAGACCAAGAAAACCACTGGGCAGTGGGTGGTCTGGAAATGTAAATGTTGATGGAACTCCACTAA----TGAGTCATGGAACGATGCTTCATATTGAAAATG-TTTTGTAAATGTGAGTTTCAAGGTTTCAAAGTGAACCCGTATGTGTTAGGAGAAAGGACACACCAAAGAAGTAAAATAATTGGGTCAATATAA----AAAGTAGAATATTGCCCAGAGAGAAGATGTGGGTAATTCCTAACACGGTTCAAAGGCACCAAAAAGGTGAGCTGTGAGTAAGATATTCAGACCTGCAC
i nomLeu3.chr11            C 0 C 0
s macFas5.chr6             179961021 431 - 181584905 TAGCACAGGCACCCCTGAAGCATGATAGGATGGCAACAGAA-GGCTGATTTAGTTTCCAAGAAATAGCTGACAGGCAGTG---TTGTGTGTGTGTCTACTGCTTAGGAACCCAAAACAAACCTTCAGACCGTTTTCATGAGTACTGAGACCAAGAAAACCACTGGGAAGTGGGTGGTCTGGAAATGTAAATGTTTATGGTACTCCACTAA----TGAGTCATGGAACCATGTTTCATACCAAAAATG-TTTTGTAAATGTGCGTTTCAAGGTTTCAAAGTGAACCCATATGTGTTAGGAGAAAGGACACACCAAAGAAGTAAAATAATTGGGTCTATGTAAAAAGAAAGTAGAATATTGCCCAGAG---ACATGTGGATAATTCCTAACATGGATCAAAGGCACCAAAAAGGTGAGCTGTGTGTAAGATACTCAGACCTGCAC
i macFas5.chr6             C 0 C 0
s papAnu2.chr6                 25902 434 + 174439528 tagCACAGGCACCCCTGAAGCATGATAGGATGGCAACAGAA-GGCTGATTTAGTTTCCGAGAAATAGCTGACAGgcagtg---ttgtgtgtgtgtctactgCTTAGGAACCCAAAACAAACCTTCAGACCGTTTTCATGAGTACTGAGACGAAGAAAACCACTGGGCAGTGGGTGGTCTGGAAATGTAAATGTTTATGGTACTCCACTAA----TGAGTCATGGAACCATGTTTCATAccgaaaatg-ttttgtaaatgtggGTTTCAAGGTTTCAAAGTGAACCCATATGTGTTAGGAGAAAGGACACACCAAAGAGGTAAAATAATTGAGtcaatataaaatgaaagtagAATATTGCCCAGAGAGAAGATGTGGGTAATTGCTAACACGGATCAAAGGCACCAAAAAGGTGAGCTGTGTTTAAGATATTCAGACCCGCAC
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89530870 431 -  91010382 TGGCACAGGCACCCCTGAAGCATGATAGGATGGCAACAGAA-GGCTGATTTACTTTCCGAGAAATAGCTGACAGGCAGTG---TTGTGTGTGTGTCTACTGCTTAGGAACCCAGAACAAACCTTCAGACCGTTTTCATGAGTACTGAGACCAAGAAAACCACTGGGCAGTGGGTGGTCTGGAAATGGAGATGTTTATGGTACTCCACTCA----TGAGTCGTGGAACCATGTTTCATACCGAAAACG-TTTTGTAAATGTGGGCTTCAAGGTTTCAAAGTGAACCCATATGTGTTAGGAGAAAGGACACACCAAAGAAGTAAAATAATTGGGTCAATATAAAAAGAAAGTAGAATATTGCCCAGAG---ACATGTGGATAATTCCTAACACGGATCAAAGGCACCAAAAAGGTGAGCTGTGTGTAAGATATTCAGACCCGCAC
i chlSab2.chr4             C 0 C 0
s calJac3.chr2                171234 427 - 204313951 TAGCACAGGCACCCCTGAAGTATGATAGGGTGGCAACGGAAGGGCCAATC-----------GAATAACTGCTGGGCAGCTTCCTTGTGTGTATGTCTACTA---AGGAATCAGAAACAAACCCTCAGACAGTTCTCATGAGTACTGAGACCAAGGAAGCCACTGGGCAGTGGGTGGTCTGAAAA-GTAAATTTTTATAGTGCTCCACTAATTACTGAGTCATAGAACGATGTTTCATATTGAAAATG-TTTTGTAAATGTGGGTTTCAAGGTTTCAAAATGAACCCATGCTTGTTCAGAGAAAGGACAAACCAAAGAAGTAAAATCATTGGGTCAATATAAAAAGAACGTAGAATGTTGCCCGGAGAGAAGGCGTGGATAATTCCTAACACGGATCAAAGGCAGGAAAAAGGTGAGCTGTGTCTGAGATACTCAGACCTGCAC
i calJac3.chr2             I 294 I 5724

a score=33978.000000
s hg38.chr3_KI270935v1_alt      4195 21 +    197351 CATCCCCTGCATTAGACACAG
s panTro4.chr3                628363 21 - 202329955 CGTCCCCTGCATTAGACACAG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199657707 21 + 202140232 CATCCCCTGCAGTAGACACAG
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120767230 20 + 123690457 CG-CCCCTGCAGTAGACACAG
i nomLeu3.chr11            C 0 C 0
s macFas5.chr6             179961452 21 - 181584905 CGTCCCCTGCAGTAGACACAG
i macFas5.chr6             C 0 C 0
s papAnu2.chr6                 26336 21 + 174439528 CGTCCCATGCAGTAGACACGG
i papAnu2.chr6             C 0 I 3205
s chlSab2.chr4              89531301 21 -  91010382 CGTCCCCTGCAGTAGACACAG
i chlSab2.chr4             C 0 C 0
e calJac3.chr2                171661 5724 - 204313951 I

a score=910.000000
s hg38.chr3_KI270935v1_alt      4216 1 +    197351 A
s panTro4.chr3                628384 1 - 202329955 A
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120767250 1 + 123690457 A
i nomLeu3.chr11            C 0 C 0
s macFas5.chr6             179961473 1 - 181584905 A
i macFas5.chr6             C 0 C 0
s chlSab2.chr4              89531322 1 -  91010382 A
i chlSab2.chr4             C 0 C 0
e calJac3.chr2                171661 5724 - 204313951 I
e papAnu2.chr6                 26357 3205 + 174439528 I
e ponAbe2.chr3             199657728 0 + 202140232 C

a score=1328435.000000
s hg38.chr3_KI270935v1_alt      4217 708 +    197351 CAACATCTTGGTAGGCAACTGGGTGAAAATTCAGAGACAACCCTAGGAACTATGAGGATGAAAAAAGTTAGCATTCATGGAATGAGGCACTGACGAAACTGAAAAGCTGGAATAACCCCATGAAATAACGAGAATAATTGTAGTATTCTG-------------AAC-CGGGGCACAGGACACAGGACTGGAGTGGAAGGCCGCATGAGACCAC---------CCCGGGAAAGACCCAGGGATCACACTGGCCCAA---AGGTGGGCACTTCCCAACTCC-GGGATTTGT--------GATACAGGCACTCCAGGCTCCACCATAGAACTGTGTCCAGCACGAAGGCAGTGCTGTCTT-------GCGGGAGGCAGGGCTGCACCACCACA--GGGGCGGGAAGGGGCCCGGCAGGGAGGCG-CCCAGTGTTTCCAGCTGCA--------C-CGGTCGGGGACCGCGCTGATGCAGAGCGCGGGGGCGCAGGTTAAACCTAAAGGAGGGAAGCTTTTG-GGGGCGGAACAGACAACGGAGAACGCTGCACACTGCCCTTCCCACGCGAATTGTGCTTTGCCttttttttt--tttttttttttttttgagacggagttttgctcttgttgcccaggcctggagtgcaatggcctgatctcggctcactgcaacctccgcctcccgggttcaagcaattctcctgcctcagcgtcccgagtagctgggattacaggcgtgcgccaccacgcccggc---taattttgtat
s panTro4.chr3                628385 703 - 202329955 CAACATCTTGGTAGGCAACTGGGTGAAAATTCAGAGACAACCCTAGGAACTATGAGGATGAAAAAAGTTAGCATTCATGGAATGAGGCACTGAAGAAACTGAAAAGCTGGAATAACCCCATGAAATAACGAGAATAATTGTAGTATTCTG-------------AAC-CGGGGCACAGGACACAGGACTGGAGTGGAAGGCCGCATGAGACCAC---------CCCGGGAAAGACCCAGGGATCACACTGGCCCAA---AGGTGTGCACTTCCCAACTCC-GGGATTTGT--------GCTACAGGCACTCCAGGCTCCACCATAGAACTGTGTCCAGCACGAAGGCAGTGCTGTCTT-------GCGGGAGGCAGGGCTGCACCACCACC--GGGGCGGGAAGGGGCCCGGCAGGGAGGCG-CCCAGTGTTTCCAGCTGCA--------C-GGGTCGGGGACCGCGCTGATGCAGAGCGCGGGGGCGCAGGTTAAACCTAAAGGAGGGAAGCTTTTG-GGGGCGGAACAGACAACGGAGAACGCTGCACACTGCCCTTCCCACGCGAATTGTGCTTTGCCttttttttt--tttttttttt-----gagacggaattttgctcttgttgcccaggcctggagtgcaatggcctgatctcggctcactgcaacctccgcctcccgggttcaagcaattctcctgcctcagcgtcccgagtagctgggattacaggcgtgcgccaccaagcccggc---taattttgtat
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199657728 697 + 202140232 --ACATCTTGGTAGGCAACTGGGTGAAAATTCAGAGACAACCCTAGGAACTATGAGGATGAAAAAAGTTAGCATTCATGGAATGAGGCACTGAAGAACCTGGAAAGCTGGAATAACCCCATGAAAT------AATAACTGTAGTATCCTG-------------AAC-TGGGGTACAGGACACAGGACTGG-GTGGAAGGCGGCAGGAGACTAC------GCGCACAGGAAAGACCCAGGGATCACAGTGGCCCAA---AGCTGGGCACTTCCCAATTCT-GGGGATAGT--------GCTACAGGCACTCCAGGCTCCACGGTAGAACTGTGTCCAGCACCAAGGCAGTGCTGTCTC-------GGGGGAGGCAGGGCTGCACCACTACT--GGGGTGGGAAGGGGACCCGCAGGGAGGCG-CCCAGTGTTTCCAACTGCA--------CGGGGTCGCGGGCGGCGCTGATGCAGAGCGTGGGGGCGCAGGTTAAACCTAAAGGAGGGAAGCTTTTC-GGGGCAGAACAGACAACGGAGAACGCTGCACACGGCCCTTCCCACCCGAATTGTGttttgccttttttttt--tttttttttt---ttgagatggagttttgc---tgtttcccaggtctggagtgcaacggcctgatctcggctcattgcaacctccgcctcccgggttcaagcaattctcctgcctcagcctcttaagtagctgggattacaggtgtgcgccaccacacccgcc---taattttgtat
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120767251 702 + 123690457 CAACATCTTGGTAGGCAACTGGGTGAAAATTCAGAGACAACCCTA-GAACTATGAGGATGAAAAAAGTTAGCATTCATGGGATGAGGCACTGAAGAACCTGAAAAGCTGGAATAACCCCATGAAGTAATGAGAATAACTGTAGTACCCTG-------------AAC-TGAGGTACGGGACACAGGGCTGACGTGGAAGGCAGCACGAGACTAC------GCGCGCGGGAAAGACCCAGGGATCACAGTGGCCCAA---AGCTGGGCACTTCCCAATTCTGGGGATTTGT--------GCTACAGGCACTCCAGGCTCCACGGTAGAACTGTGTCCAGCACGAAGGCAGTGCTGTCTC-------GGGGGAGGCAGGGCTGCACCACCACT--GGGGCGGGAAGGGGCCCCGCAGAAAGGCG-CCCAGTGTTTCCAACTGCA--------TGGGGTCCAGGGCAGCGCTGATGCAGAGCGTGGGGGAGCAGGTTAAACCTAAAAGAGAGAAGCTTTTC-AGGGTGGAACAGACAACAGAGAACGCTGCACACTGCCTTTCCCACCCGAATTGTGATTTGCCttttttttt--tt-------------gagacggagttttgctcttgttgcccaggcctggagtgcaatggcctgatctcggctcactgcaatctccgcctcccggattcaagcaattctcctgcctcagcctcccgagtagctgggattacaggcgtgagccaccgcacccggcctgtttttTTGTGT
i nomLeu3.chr11            C 0 I 8
s macFas5.chr6             179961474 722 - 181584905 CAACATCTTGGTAGGCAACTGGGTGAAAATTCAGAGACAATCCTAGGAACTACGAGGATGAAAAATGTTAGCATTCTTGGAATGAGGCACTGAAGAACCTGAAAAGCTGGAATAACCCCATGAAATAATGAGAATAATTGTAGTAGCCTG---TAGTATCCTGAAC-CGGGGCACAGGTCACAGGACTGGGGTGGAAGGCAGCACG-GAGTAC------GCACGCGGG-AAAACCCAGGGATCACAGTGGCCCAA---AGCTGGGCACTTCCCAATTCCGGCGATTGGT--------GCTACAGGCACTCCAGGTTCCACCGCAGAACTGTGTCCAGCACGGAGGCAGTGCTGTCTC-------GGGGGAGACAGGGCTGCACCACCACC-AGGGGCGGGAAGGGGTCAGGCAGGGAGGCG-CCCAGTGTTTCCAGCTGCACTGGGCGCCTGCGTCGGGGGTGGCGCTGATGCAGAGCGTGGGGGCGCAGGCTAAACCTAAAAGAGGGAAGCTTTTG-GGGGCGGAACAGACAAC-------ACTGCACACTGCCCTTCCCACCCGAATTGTGttttaccttttttttttcttttttcttt---ttgagacagagtttctctcttgttgcccaggcctggagtgcaatagcccgatctcggctcactgcaacttcggcctcccgggttcaagcaattctcctgcctcagcctcccgagcagctgggattacaggcgtgcgccaccacgcccggc---taattttatat
i macFas5.chr6             C 0 C 0
s papAnu2.chr6                 29562 700 + 174439528 CAACATCTTGGCAGGCAAATTAGTGAAAATTCAGAGACAACGCTTGGAACTACGAGGATGAAAAG----AGCATTCGTGGAATGAGGCACTGAAGAACCTGAAAAGCTGGAAAAACCCCACGAAATAATGAGAATAATTGTAGTATCCTGAACcagggcacaggacacaggacacaggacacaggacTGGGGTGGAAGGCGGCA-------------------------AAGACCCAGGGATCACAGTGGCCCAA---AGCTGGGCACTTCCCAATTCCGGGGATTGGT--------GCTACAGGCACTCCAGGCTCCACCGCAGAACTGTGTCCAGCACGGAGGCAGTGCTGTCTC-------GGGGGAGACAGGGCTGCACCATCACCAAGGGGCCGGAAGGGACCGGGCAGGGAGGCG-CCCAGTGTTGCCAGCTGCA--------AGGCGTCGGGGGCGGCGCTGAGGCAGAGCGCCGGGGCGCAGGTTAAACCTAAAGGAGGGAAGCTTTTACGGGGCGGAACAGACAACCGAGA--ACGCTGCACTGTCCTTCCCACCCGAAATgcgttttcccttttttttt--tttttttttt---ttgagacggagtttcgctcttgttgcccaggcctggagtgcaacggcctgatctccgctcactgcaacctccgcctcctggcttcaagcagttctcctgcctcagcctcccgagtagctggga--ataggcgtgcgccaccacccccggc---taattttgtat
i papAnu2.chr6             I 3205 C 0
s chlSab2.chr4              89531323 722 -  91010382 CAACATCTTGGTAGGCAACTGGGTGAAAATTCAGAGACAACCCTAGGAACTACGAGGATGAAAAAAGTTAGCATTCATGGAATGGGGCACTGAAGAACCTGAAAAGCTGGAATAACTCCATGAAATAATGAGAATAATTGTAGCAGCCTG---TAGTATCCTGAAC-CGGGGCACAGGTCACAGGACTGGGGTGGAAGGCGGCACG-GAGTAC------GCGCGCGGG-AAAACCCAGGGATCACAGTGGCCCAA---AGCTGGGCACTTCCCAATTCCGGGGATTGGT--------GCTACAGGCACTCCAGGTTCCACCGCAGAACTGTGTCCAGCACGAAGGCAGTGCTGTCTC-------GCGGGAGGCAGGGCCGCACCACCACC-AGGGGCGGGAAGGGGTCA-GCAGGGAGGCGCCCCCGTGTTTCCAGCTGCACTGGGCGCCTGCGTCGGGGGTGGCGCTGATGCAGAGCGCGGGGGCGCAGGCTAAACCTAAAAGAGGGAAGCTTTTG-GGGGCGGAACAGGCAAC-------ACCGCACACTGCCCTTCCCACCCGAATGGTGttttaccttttttttttcttttttcttt---ttgagacggagtttctctcttgttgcccaggcttggagtgcaatagcccgatctcggctcactgcaacttcggcctcccgggttcaagcaattctcctgcctcagcctcccgcgcagctgggattacaggcgtgcgccaccacgcccggc---taattttgtat
i chlSab2.chr4             C 0 C 0
s calJac3.chr2                177385 674 - 204313951 caacatctgggtgggcaactgggtgaaaattcagagaaaaccttaggaactctgaggatgaaaaaagttagCGTTCATGGAAGGAGGCACTGAAGAACATAAAAAACTGGAATAACGCTATGAAATAATGACAATAATTGTAGTATCCTG-------------AAC-AGGGACACAGGACACGGGACTGAGATGGAACGCGCGCCGAGAGCGCGCGCGGGCGCACGGGAAAGACCCGGGGATCGCAGTTGCCCGACCGAAGCCGGCACTTCCCAATTCCGGGGATTTGTAGGTTTCGGCTACAAGCACTCCGGGCTCCACTGTAGAACTGCGCCCAGCACCAAGGCAGTGCTCCTCCCTCTCAGGAGGGAGGCTGGGCTGCGCGACCACC---------AGAAgggcccggccggggggcg-ccgAGTGTTTCCAGCTGCA--------cgggggcgggggccgcgctgctgccccgcgc-ggggcACAGGTTAAACCCA---GAGGGAAGCTTTCG-AGGACGGAAGAGACGACGGAGAACGCCGCACACTGTGCTTCTCACCTGAATTGTGttttgctttttttttt--t------------ttgagatggagtttcgctgtcgttgcccagg-ctggagtacaatggcgcgatctcggctcactacaacctcc--------------------------gcctcagtctccagagtagctgggattacgggcttgctc----------------taattttgtat
i calJac3.chr2             I 5724 C 0

a score=139518.000000
s hg38.chr3_KI270935v1_alt      4925 83 +    197351 ttttagtagatac-tgggtttctccatattggccaggttggtctcgaactcctgacttcaggtgatccaccggcctcggcctcc
s panTro4.chr3                629088 83 - 202329955 ttttagtagatac-tgggtttctccatattggccaggttggtcttgaactcccgacttcaggtgatccaccggcctcggcctcc
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199658425 83 + 202140232 ttttagtagatat-agggtttctccatattggccaggttggtctcgaactcccgacttcaggtgatccaccggcctcggcctcc
i ponAbe2.chr3             C 0 C 0
s macFas5.chr6             179962196 83 - 181584905 ttttagtagatac-gaggtttctcaatattggccaggctggtctcgaacccccgacttcaggtgatccaccggcctcggcctcc
i macFas5.chr6             C 0 C 0
s papAnu2.chr6                 30262 83 + 174439528 atttagtagatac-ggggtttctccatattggtcaggctggtctcgaactcccgacttcaggtgatccaccggcctcgacctcc
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89532045 83 -  91010382 ttttagtagatac-gaggtttctcaatattggccaggctggtctcgaacccccgacttcaggtgatccaccggcctcggcctcc
i chlSab2.chr4             C 0 C 0
s calJac3.chr2                178059 84 - 204313951 ttttagcagagacaggggtgtctccatgttggtcaggctggtctcgaacatcccacctcaggtgatccgcccgcctcagcctcc
i calJac3.chr2             C 0 C 0
e nomLeu3.chr11            120767953  8 + 123690457 I

a score=32423.000000
s hg38.chr3_KI270935v1_alt      5008 48 +    197351 caaagtgctgggattacacgcgtcagccaccgcacccggccTGCTTGC
s panTro4.chr3                629171 48 - 202329955 caaagtgctgggattacacgcgtcagccaccgcacccggccTGCtttt
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199658508 48 + 202140232 caaagtgctgggattacaggcgtgggccaccgcacctggccTGCtttt
i ponAbe2.chr3             C 0 C 0
s papAnu2.chr6                 30345 48 + 174439528 caaagtcctgggatttcaggcgtcAGACACTGCGCACGgcctgcttta
i papAnu2.chr6             C 0 I 16
s calJac3.chr2                178143 46 - 204313951 caaagtgctgagattacaggcgtgagccaccgcgcccggccTGCAt--
i calJac3.chr2             C 0 C 0
e chlSab2.chr4              89532128  0 -  91010382 C
e macFas5.chr6             179962279  0 - 181584905 C
e nomLeu3.chr11            120767953  8 + 123690457 I

a score=269418.000000
s hg38.chr3_KI270935v1_alt      5056 247 +    197351 ttttttttttttttttttt------------gcagagtctcgctgtccaccgggctggagctgcagtgatctcggctccctgcggcctcgacctcccgggctcaggcgatcctcccgcctcagcccacggagtacatgggaccacaggag---cccaccacgcccgactacttgctgtaatttttgtagggatggggtctagccccgctgcccaggctggtccgcactgctgggctcaagagctccgcccgcctccgcctca
s panTro4.chr3                629219 257 - 202329955 ttttttttttttttttttt-tttttttttttgcagagtctcgctgtccaccgggctggag-tgcagtgatctcggctccctgcggcctcgacctcccgggctcaggcgatcctgccgcctcagcccacggagtacatgggaccacaggag---cccaccacgcccgactacttgctgtaatttttgtagggatggggtctagccacgctgcccaggctggtccgcactgctgggctcaagagctccgcccgcctccgcctcc
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199658556 245 + 202140232 tttttttttttttt-----------------gcagagtctggctgtccaccgggctggagttgcaatgatctgggctccctgcagcctcgagctcccaggctcaggcgatcctcccgcctcagcccacagagtagatgggaccacaggaggccgccaccacgcccgactactttttgtaatttttgtagggatggggtctagccaccctgcccaggctggtccgaactgctgggctcaagagctccgcctgcctccgcctcc
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120767961 250 + 123690457 ttttttttttttttttttt------------tcagagtctcgctgtccaccaggctggagttgccgtgatctcggctccctgcagcctccagctcccaggctcaggcgatcctgccgcctcagcccacggagtagatgggaccacaggagcccgccaccacgcccgactactttttgtaatttttgtagggatggggtctagccacgctgcccaggctggtcccaactgctgggctcaagagctccgcccgcctccaccttc
i nomLeu3.chr11            I 8 C 0
s papAnu2.chr6                 30409 261 + 174439528 tttatttatttatttatttatttatttttgggcaGAGTCTGGCTGTCcaccgggctagag-tgcagtgatctcggctccctgcggcctcgacttcccgggctcaggcgatcctcccgcctctgcccatggagtagatgggaccacaggggcccaccaccacgcccgactattttctgtaatttttgtagggatggggtctggccacgctgcccaggctggtccgaactgctgggctcaggagctccgcccgcctccgcctcc
i papAnu2.chr6             I 16 C 0
s calJac3.chr2                178189 244 - 204313951 --tttttttttcttttctg------------gcagagtctggcggtcgaccgggctggag-tgcagtgatctcggctccctgaggccccgactg--agggctcaggcgatcctcccgcctcagcccccggggcagctaggcccacaggagcccgccaccgcgcccggcggctt-ctgtaatttttgtagggatgaagtttcgccaagctgcccaggccgggccgaagtgctggactcaacagctccgcccgcctccgcctcc
i calJac3.chr2             C 0 C 0
e chlSab2.chr4              89532128   0 -  91010382 C
e macFas5.chr6             179962279   0 - 181584905 C

a score=369415.000000
s hg38.chr3_KI270935v1_alt      5303 177 +    197351 caaagcgcagggatcccaggtgtgagctaccgcgccccgccCAGAGTTTCCGACTGTTAGCGTGAATCATATTCACGTCAAAACTTCTTTTTATACAAGAACTAAAAGGCAAACGAAATCCCTGCTCCATCACTGCCTGTCCCGGGTCGCGGCGCGGGACATTTCCTCCAAGCGCCT
s panTro4.chr3                629476 177 - 202329955 caaagcgcagggatcacaggtgtgagctaccgcgccccgccCAGAGTTTCCCACTGTTAGCGTGAATCATATTCACGTCAAAACTTCTTTTTATACAAGAACTAAAAGGCAAACTAAGTCCCTGCTCCATCACTGCCTGTCCCGGGTCGCGGCGCGGGACGTTTTCTCCAAGCGCCT
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199658801 177 + 202140232 caaagcgcagggatcacaggtgtgagctaccgcgccccgccCGGAGTTTCCGACTGTTAGCGTGAATCATATTCACGTCAAAACTTCTTTTTATACAAGAACTAAAAGGCAAACTAAATCCCTGCTCCATCACTGCCTGCCCCGGGTGGCGGCGCAGGACATTTTCTCCAAGCGCCT
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120768211 177 + 123690457 caaagcgcagggatcacaggtgtgagctaccgcgtcccgccCAGAGTTTCCGACTGTTAGCGGGAATCATATTCACGTCAAAACTTCTCTTTATACACGAACTAAAAGGCAAACTAAATCCCTGCTCCATCATTGCCTGTCCCGGGTCGCTGCGCAGGACATTTTCTCCAAGCGCCT
i nomLeu3.chr11            C 0 C 0
s macFas5.chr6             179962279 173 - 181584905 cacagcgcagggatcacaggcgtgagctaccgcgccccgccCAGAGTTTCCGACTGTTAGCCTGAATCACATTCACGTCAAAACTTCTTTCTATAAGAGAACTAAAAGG----CTAAGTCCTTGCTCCATCACTTCCCGTCCCGGATCGCGGCGCGGGGCATTTTCCCCAAGCGCCT
i macFas5.chr6             C 0 C 0
s papAnu2.chr6                 30670 177 + 174439528 caaagcgcagggatcacaggcgtgagctaccgcgccccgCCCAGAGTTTCCGACTGTTAGCCTGAATCACGTTCACGTCAAAACTTCTTTTTATACAAGAACTGAAAGGCTAACTAACTCCCTACTCCATCACTTCCCGTCCCGGGTCGCGGAGCCGGACATTTTCTCCAAGCGCCT
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89532128 177 -  91010382 cacagcgcagggatcacaggcgtgagctaccgcgccccgccCAGAGTCTCGGACTGTTAGCCTGAATCCCATTCACGTCAAAACTTCTTTCTATAAAAGAACTAAAAGGCAAACTAAGTCCTTGCTCCATCACTTCCCGTCCTGGGTCGCGGCGCGGGGCATTTTCCCCAAGCGCCT
i chlSab2.chr4             C 0 C 0
s calJac3.chr2                178433 159 - 204313951 caaagcgccggga-----------------CGC-CCCCGCCCAGAGTTTTCGACTGTTAGTGTGAATCACGCTCGCGTCAAAACTTCTTTTTATACAAGAACTGAAAGGCAAACTCGGACTCTGCTCCATCACTTCCAGTCCCGGGACTCGTCGCTGGACACTTCCTCCACGCGCCT
i calJac3.chr2             C 0 I 97

a score=20272.000000
s hg38.chr3_KI270935v1_alt      5480  45 +    197351 TC------------------------------------------------CCGGCCCCG---CGCGCAGGT-----------------------------------------------GGCCTGCGCCG--------GAGGATCCCGGACA
s panTro4.chr3                629653  44 - 202329955 TC------------------------------------------------CCG-CCCCG---CGCGCAGGT-----------------------------------------------GGCCCGCGCCG--------GAGGATCCCGGACA
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199658978  43 + 202140232 TC------------------------------------------------CCG--CCCG---CACGCAGGT-----------------------------------------------GGCCTGCGCTG--------GAGGATCCGGGGCA
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120768388  45 + 123690457 TC------------------------------------------------CCGGCCCCG---CCCGCAGCT-----------------------------------------------GGTCTGCGCGG--------GACGATCCCGGACA
i nomLeu3.chr11            C 0 C 0
s macFas5.chr6             179962452  43 - 181584905 TC------------------------------------------------ACG-CACCG---CGCCCAGGC-----------------------------------------------GGCC-GCGCCG--------GAGCATCCCGCGCA
i macFas5.chr6             C 0 C 0
s papAnu2.chr6                 30847 149 + 174439528 TCCCAGCACCGGTAGACGGCTGCCTGCTCCAGAGCTCTGGCTTTCTCCAGACG-CCCCGGACCGCACAGGCCCCGCAGGCGCCAGGGCGTTGCTTGGCAACTGAGCTGCGAGGGGATTGGCC-GCGCGGGACCCCGTGACCATCCCGGAGA
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89532305  43 -  91010382 TC------------------------------------------------ACG-CACCG---CGCCCAGGT-----------------------------------------------GGCC-GCCCCG--------GAGCATCCCGCGCA
i chlSab2.chr4             C 0 C 0
e calJac3.chr2                178592  97 - 204313951 I

a score=444844.000000
s hg38.chr3_KI270935v1_alt      5525 273 +    197351 ACGCGCATTTCCTGCGCCCCCGGAAGCGGCGGTAACGCCTGGCCCTGCCCCC-GGCAGAGGCGGAAGCACAGTCGCTCT--GAGGTCGCCCGTGGCCGCAGGTGCCTCAGCCCAGCCGCGCG-------CCTTGGCCCTTGGCCGCCTACTCCTACCGCCCCGG--CCTTGGG--CGGCCCTGGGCCTGCTG-------------CGGGCGCG----------GCGCTGCCCGACCAGAGCTTCCTGTGGAACGTCTTCCAGAGCTGCCAC---------------CTGGCACCGCCCCGGCACC----TCCCGCCTCCCCCGCAGCTG
s panTro4.chr3                629697 273 - 202329955 ACGCGCATTTCCTGCGCCCCCGGAAGCGGCGGTAACGCCAGGCCCTGCCCCC-GGCAGAGGCGGAAGTGGTGTCGCTCT--GAGGTCGCCAGTCGCCGCACGCGCCTCAGCCCAGCGGCGGG-------CCTTGGCCCTTGGCCGCCTACTCCTACCGCCCCAG--CCCCGGG--CGGCCCTGGGCCTGCTG-------------CGGGCGCG----------GCGCTGCCCGACCAGAGCTTCCTGTGGAACGTCTTCCAGAGCTGCCAC---------------CTGGCAccgccccggcacc----tcccgcctcccccgcagctg
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199659021 275 + 202140232 ACGCGCATTTCCTGCGCCCCCGGAAGTGGCGGCGACGCCAGGCCCTGCCCCC-CGCAGAGGAGGAAGCGCAGTCGCCCTGAGAGATCTCCAGTCGCCGCAGGCGCCTCGGGCCAGCCGCGCG-------CCTTGGCCTTTGGCCGCCCATTGCTAccgccccgg--ccctggg--cggcccggggcctgctg-------------cgggcggg----------gcgcTGCCCGACCAGAGCTTCCTGTGGAACGTCTTCCAGAGGGGCGGG---------------CTGGCAccgcccaggcacc----tcccgcctccgccgcagccg
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120768433 251 + 123690457 ACGCACATTTCCTGCGCCC---GAAACGGCGGTAACGCCAGGCCCCGCCCCC-GACAGAGGCGGAAGCGGAGCCGCCCTGAGAGGTCTCCCGTTGCCGCAGGCGCCTCAGCCCAGCCGCGCG-------CCTCAGCCCTTGGCCGCATACTCCTACCGCCCTGG--CCCCGGG--CAG----------------------------------G----------GCGCTGCCAGAACAGAGCTTCCTGTGGAACGTCTTCCAGAGGTGCCGG---------------CTGGCACTGCCCCCGCACC----CCCCGCCTCCGCCGCAGCCG
i nomLeu3.chr11            C 0 C 0
s macFas5.chr6             179962495 266 - 181584905 C-ACGCATTTCCTGCGCCCCCGGAAGTGGCGGTAACGCCAGGCCCTGCCCCC-GGCAGAGGCGGAAGCGGAATCGCCTTGAGAGATCTCCCGTCGCCGCAGGCGCCTCAGCCCGGCCGCGCGCCTTCGCCCTTGGCCCTTGGCCGCCTGCCCCTACCGCTCCGG------------------GGGCTTGCTG-------------CGGGCGCG----------GCGCTGCCGGGCCAGTGC-TTCTGTGGAATGTCTTCCAGAGGTGCGGC---------------CTGGCCCCGCCCGGGCACC----TCCCGCCTCCGCGGCGACCG
i macFas5.chr6             C 0 C 0
s papAnu2.chr6                 30996 277 + 174439528 CTACGCATTTCCTGCGCCCCCGGAAGTGGAGGTAACGCCAGGCCCTGCCCCC-GGCAGAGCCGGAAGCGGAGTCGCCCTGAGAGGTCTCACGTCTCCGTAGGCGCCTCAGCCCAGCCGCGCG-------CCTTGGCCCATGGCCGCCTACTCCTACCGCCCCGGCCCCGGGGC--CGGCCCAGGGCCTGCTG-------------CGGGCGCG----------GCGCTGCCGGACCAGAGCTTTCTGTGGAACGTCTTCCAGAGGTGCGGC---------------CTGGTACCGCCCCAGCACC----TCCCGCCTCCGCTGCGGCCG
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89532348 262 -  91010382 C-ACGCATTTCCTGCGCCCCCGGAAGTGGCGGTAACGCCAGGCCCTGCCCCCTGGCAGAGGCGGAAGCGGAATCGCCTTGAGAGATCTCCGGTCGCCGGAGGCGCCTCAGCCCGGCCGCGCGCCTTGGCCCTTGGCCCTTGGCCGCCTGCTCCTACCACTCCGG------------------GGGCTTGCTT-------------TGGGCGCG----------GCGCTGCCGGGCCAGTGC-TTCTGTGGAATGTCTTCCAGAGGTGCGGC---------------CTGGCACCGCCCGGGCACC----TCCCGCCTCCGCGGC-----
i chlSab2.chr4             C 0 I 4
s calJac3.chr2                178689 314 - 204313951 TCACGCGTTTCCTGCGTCCCCGGAAGTGACGGT-ACGCCAAGTCCTGCCCCC-GGCAGACCCGGAAGCGGAGTCGCCCTGAGCCTTCTCCCTTAGCCGCCCGCGCCTCAGCCCAGACGCGCG-------CATCGGCTCATGGCCGCCTACTCCTAccgccccgg--ccccggggccggccccggcccAGTGGGATCCCCGGGTACCGAGCTCGNNNNNNNNNNGCGCTGCCGGACCAGAGC-TCCTGT-GAACGTCTTCCAGAG-TGCGGCTGCACGCCTCACTCGCTCGCTCTGCGC-GGCGCCCGGATCCTGCCCGACCCGCGGCAG
i calJac3.chr2             I 97 C 0

a score=24238.000000
s hg38.chr3_KI270935v1_alt      5798 46 +    197351 C------------------------------CCCGGACCCGTGTCCCGACCCCCGCGGCCAACCCCGTTCCCTGCC
s panTro4.chr3                629970 46 - 202329955 c------------------------------cccggacccgtgtcccgacccccgcggccaaccccgttccctgcc
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199659296 46 + 202140232 c------------------------------ccccgacccctgccccgacccacgcggccgcccccgttcgctgcc
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120768684 76 + 123690457 CCCCCTGCCCCGAACCCGCGGCCGACCCCAACCCCGACCCCTGCCCCAACCGCCGCGGCCGCCCCCGTTCCCTGAC
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr6                 31273 43 + 174439528 C------------------------------CCCCGACTCCTGCCCC---CAACGCCGCGGACCCGGTTCACTGCC
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89532614 34 -  91010382 G------------------------------CCCCGACCCCCGCGGC------CGCCCCCGACCC------CTGCC
i chlSab2.chr4             I 4 I 9
s calJac3.chr2                179003 44 - 204313951 --------------------------------CCGCAGTCCCGTGCCGGGCCCTGCGTCATCATCCGTCCCTTGCC
i calJac3.chr2             C 0 I 2
e macFas5.chr6             179962761  0 - 181584905 C

a score=6366.000000
s hg38.chr3_KI270935v1_alt      5844 9 +    197351 GGTTGCCCC
s panTro4.chr3                630016 9 - 202329955 ggttgcccc
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199659342 9 + 202140232 ggttgcccc
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120768760 9 + 123690457 GGTTTCCCC
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr6                 31316 9 + 174439528 GGTtccccc
i papAnu2.chr6             C 0 C 0
s calJac3.chr2                179049 7 - 204313951 GATTCTC--
i calJac3.chr2             I 2 C 0
e chlSab2.chr4              89532648 9 -  91010382 I
e macFas5.chr6             179962761 0 - 181584905 C

a score=105444.000000
s hg38.chr3_KI270935v1_alt      5853 112 +    197351 GCGGCCTCC--------------------------------------------------------------------------------------------CCCGTCACCTGCCGGGTCCCCA-------------------------------------GCGGCC-------TCCCCCGTCCCCTGCCCCGACCTCCGCCGTC---------------------TCCCCCG-CCCCTGCCCGGACCCCCGCGGGCGCCCCCGAACCCTA
s panTro4.chr3                630025 107 - 202329955 gcggcctcc--------------------------------------------------------------------------------------------cccgtcacctgccatgtcccca-------------------------------------gcggcc-------tcccccgtcccctgccccgaccgccgccgcc---------------------tcccccgacccctgccccgacccccgcggccgcccccga------
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199659351 181 + 202140232 gcggcctcccccatc-------------------------------------------------------------ctcTGCTGGTTGCCCCGCGGCCTCTCCCATCACCTGCCGGGTCCCCAGAGGGCCCCCCCCACCCCGTTCACTgccccgacccccgcggcc-------gcccccatcccctgccccgatccccgcggcc---------------------gcccccgacccctgccccgacccccacggcctcccccgacccctg
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120768769 199 + 123690457 GCGGCCTCACCCATCACCTGCCGGGTCCCCAGCGGCCGCCCCCGACCCCTGCCCCGACTGACGCGGCTGCCGCGTTCCCAGCCGGTTGCCCCGTGGCCTCCCCCGTCACCTGCCGGGTCCCCA-------------------------------------GCGGCC-------TCCCCCGTTCCCTGCCCCGACCGCCACCGCC---------------------TCCCCCGTACCGTGCCCGGACTTCCGCGGCCGCCCCCGA------
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr6                 31325 141 + 174439528 gcggcctcc--------------------------------------------------------------------------------------------tctgtcccctgtcgggtccccc-------------------------------------gcggcctcccccttcccccttcccctgccccgtcccccgcggcctcccccttcccccttcccccgtcccccgtcccctgccccgcccgccgcggcctcccccgtcccctg
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89532657 113 -  91010382 GCGGCCTCC--------------------------------------------------------------------------------------------CCCGTCCCCTGCCCCGACCCCC-------------------------------------GCGGCC-------GCCCCCGACCCCTGCCCCGACTGTCGCGGCC---------------------TCCCCCGTCCCCTGCCCCGACCCCCGCGGCCGCCCCCGACCCCTG
i chlSab2.chr4             I 9 C 0
s calJac3.chr2                179056 113 - 204313951 GCGGCAGTC--------------------------------------------------------------------------------------------CCCGTTCGCTGCCGGGTcccct-------------------------------------gcgtcc-------tcccccgtcccttgccccgactcccgcggcc---------------------gcccccgttcgctgccgggttccctgcgtcctcctccgtcccttg
i calJac3.chr2             C 0 C 0
e macFas5.chr6             179962761   0 - 181584905 C

a score=1637434.000000
s hg38.chr3_KI270935v1_alt      5965 861 +    197351 CCCCGACCGACGCGGCCGCCCCCATCCCCTGCCCCGACCCCCGCGGCCGCCCCCATCCCCTTC-----------------------------------------------------------CGGGTCCCCCGCGGTCTCCCCCGTCCGCTGCCCGGTCTCCTGGGGCCGCCCCTGCCTCCTGCCCGGTCCCTGTCCTGTGCGTCGGGCGCTTCCCAAGGTGCAGAGGGC-GCCACTGCAGACCCGAGGTCGCGGCCACCGGCTCCTGGGCCAGGCCCCGTTTCTCGCCTC--GAGCCGTCG-GGGGAGGGTCTCCA-GGGTGCTTGTTTGGGGAAAGCGGAAACAGACTGTCTGGGCCGCTGTTAAAATGTCAGCAGCCAAGGAAGAAGCAGCGACCTGGCGTCTGCTCGGGCCAGGTGACCTTTATGGCGGCGCCTTCTGTCCCTGGTCGCTTTTCCACTGAATGAATGACCGAAACTGTAGTAACTCATGGCCAGGGAATGGCTTAGTTATCTGAGGGAATCTTGTCTTGTCTGTGAAAAAGGGAAACTGGTGCAAATGGGAATTCAGACAGGTCAGGAGGGGAAGGAAGGGAAGGATTGAGGTGGGAAAAGAGAGAGAAAGATGATTGTCCTCTTAGGGGAAGAACACACTTGGACGT-GGCTCCTGGGGCACTTCCTTGATTCCGCTGTACTCCTCAGCGGGACCGGAGAGGCGGAGGTTCCAGGAGG----GAGCCTTCCAGAGTCGGTGCAGGGTTGACAGGAGACGTTTGTTTTGCTTTTCCTGAACTTTCGATCGCCAGCTTGTTTGGTCTTCTTGATGTTATAGGGTTGATAGAG--AGGAGTGGAGTGATATCGGACACCCAGCTTCAGCAAGCTCTCTCCAAGGGTGAGTGGGCCAGTGGGACCTGGGTCTCCGGACCAA
s panTro4.chr3                630132 836 - 202329955 -------------------------ccccttccccgaccgccgcggccgcccccatccccTTC-----------------------------------------------------------CGGGTCCCCCGCGGTCTCCCCCGTCCCCTGCCCGGTCTCCTGTGGCCGCCCCTGCCTCCTGCCCGGTCCCTGTCCTGTGCGTCGGGCCCTTCCCAAGGTGCAGAGGGC-GCCACTGCAGACCCGAGGTCGCGGCCACCGGCTCCTGGGCCAGGCCCTTTTTCTCGCCTCAAGAGCCGTCAAGGGGAGGGTCTCCA-GGGTGCTTGTTTGGGGAAAGCGGAAACAGACTGTCTGGGCCGCTGTTAAAATGTCAGCAGCCAAGGAAGAAGCAGCGACCTGGCGTCTGCTCGGGCCAGGTGACCTTTATGGCGGCGCCTTTTGTCCCTGGTCGCTTTTCCACTGAATGAATGACCGAAACTGTAGTAACTCATGGCCAGGGAATGGCTTAGTTATCTGAGGGAATCTTGTCTTGTCTGTGAAAAAGGGAAACTGGTGCAAATGAGAATTCAGACAGGCCAGGAGGGGAAGGAAGGGAAGGATTGAGGTGGGAAAAGAGAGAGAAAGATGATTGTCCTCTTAGGGGAAGACCACACT-GGACGTCGGCTCCTGGGGCACTTCCTTGATTCCCCTGTACTC---AGCGGGACGGGAGAGGCGGAGGTTCCAGGAGG----GAGCCTTCCAGAGTCGGTGCAGGGTTGACAGGAGACGTTTGTTTTGCTTTTCCTGAACTTTCGATCGCCAGCTTATTTGGTCTTCTTGATGTTATAGGGTTGATAGAG--AGGAGTGGAGTGATATCGGACACCCAGCTTCAGCAAGCTCTCTCCAAGGGTGAGTGGGCCAGTGGGACCTGGGTCTCCGGACCAA
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199659532 841 + 202140232 ccccgacccccgcggcggcccctgacccctgccccGACGGACGCGGCCGCCCCCATCCCCTGC-----------------------------------------------------------CGGGCCCCTCGCGGTCTCCCCCGTCCCCTGCCCGGTCTCCTGTGGCCGCCTCTGCCTCCTGCCGGGTCCCTGTCCTGT--GTCGGGCCCTTCCCAAGGTGCAGAGTGC-GCCACTGCAGACCCGAGGTCGC-GCCACCGGCTTCTGGGCTAGGCT-------------------CCGTCAGGGGGAGGGTCTCCA-GGGTGCTTGTTTGGGGAAAGCGGAAACAGAATGCCCGGACGGCTGTTAAAATGTCAGCAGCCAAGGAACAAGCAGCGACCTGGCGTCTGGTCGGGCCAGGTGACCTTTATGGCGGCGCCTTCTGTCCCTGATCGCTTTTCCACTGAATGAATGACCAAAACTGTAGTAACTCATGGCCAGGGAATGGCTTAGTTATCTGAGGGAATATTTTCTTGTTTGTGAGAAAGGGAAACTGGTGCAAATGCGAATTCAGACAGTCCAGGA-GGGAAGGAAGGGAAGGATTGAGGTGTGAGA--AGAGAGAAAGATGATTGTCCTCTTAGGGGAAGACCACACTTGGACGTCGGCTCCTGGGGCACTTCCTTGATTCCCCTGTACTCCTCAGCGGGATGGGAGAGGCGGAGGTTCCAGGAGG----GAGCCTTCCAGAGTCGGTGCAGGGTTGACAGGAGACGTTTGTTTTGCTTTTCCTGAAGTTTCGATCGCCAGCTTATTTGGTCTTCTTGATGTTGTAGGGTTGATAAAGACAGGAGTGGAGTGATATCAGACACCGAGCTTCAGCAAGCTGTCTCCAC-GGTGAGTGGGCCAGTGGGACCTGGGCCTCGGGACCAA
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120768968 835 + 123690457 -------------------------CCCCTGCCCCGACCCCCGCGGCCGCCCCCATCCCCTGC-----------------------------------------------------------CAGGTCCCTCGCAGTCTCCCCCGTCCCCTGCCCGGTCTCCTGTGGCTGCCCCTGCCTCCTGCCCGGTCCCTGTCCTGTGCGTCAGGCCCTTCCTAAGGTGCAGAGTGCAGCCACTGCAGACCCGATGTCGTGGCCACCGGCTCCTGGGCTAGGCCCTTTTTCTCGCCTCAGGAGCCGCCAGGGGGAGGGTCTCCA-GGGTGCTTGTTTGGGGAAAGCGGAAACAGACCGCCTGGGCCGCTGTTAAAATGTCAGCAGCCAAGGAAGAAGCAGCGACCTGGCGTCTGGTTGGGCCAAGTGACCTTTATGGGGGTGCCTTCTGTCCCTGGTCGCTTTTCCACTGAATGAATGACCGAAACTGTAGTAACTCATGGCCAGGGAATGGCTTA-TTATCTGAGGGAATCTTTTCTTGTTTGTGAAAAAGGGAAACTGGTACAAATGCGAATTCAGACAGGCCAGGAGGGGAAGGAAGGGAAGGATTGAGGTGGGAAA--AGAGAGAAAGATGATTGACCTCTTAGGGGAAGACCACACTTGGACGTCGGCTCCTGGGGCACTTCCTTGATTCCCCTGCACTCCTCAGCGGGATGGGAGAGGCGGAGGTTCCAGGAGG----GAGCCTTCCAGAGTCGGTGCAGGGTTGACAGGAGACGTTTGTTTTGCTTTTCCTGAACTTTCGATCGCCAGCTTATTTGG---TCTTGATGTTGTAGGGTTGATAAAGACAGCAGTGGAGTGATAT-GGACACCGAGCTT-AGCAAGCTGTCTCCAACCGTGAGTGGGCCAATGGGACCTGGGCCTCCAGACCGA
i nomLeu3.chr11            C 0 C 0
s macFas5.chr6             179962761 836 - 181584905 CCCCGACCCCCGCGGCCGCCCCCGT-CCCTGCCCCGACCGACGCGGCCGCTCCCGTCCCCTGC-----------------------------------------------------------CCGGTCCCCTGCGGTCTCCCCCGTCCCCTGT------------GGCCGCCCCCGCCTCCTGCCCGGTCCCTGCCCTGTGCGTTGGGCCCTTCCAGAGGTGCAGAGTA--GCCGCTGCAGACCCGAGGTCGCGGCCACCGGCTCCCGGGCTAGGCCCTTTTTCTCGCCTCAGGAGCCGCCGGGCGGAGGGTCTCCAGGGGTGCTTGTTCGGGGAAAGCAGAGACAGAATGTCTGGGC-GCTGTT-AAGTGTCAGCAGCCGAGGAAGCAGCAGCGACCTGGCGTCTGCTCGGGGCAGGTGACCTTTCCGGCGGCGCCTTCTGTCCC-GGTCGCTTTTCCACGGAATGAATGACCGAAACTGTAGTGACTCATGGCCAGGGAATGCCTTAGTTACCTGAGGGAA-----TCTTGTTTGTGAAAAAGGGAAACTGGTGCAAATGTGAATTCAGACAGGCCAGGAGAGGAAGGAAGGGAAGGATTG------------AGAGAGAAAGATGATTGGCCTCTTAGGGGAAGACCCCGCTTGGACGTGGGCTCCTGCGGCACTTCCTTGATTCCCGTGTCCTCCTCAGCGGGATGGGAGAGGCGGAGGTTCCAGGAGGCTCCGAGCCTTCCAGAGTCAGTGCAGGGTTGACAGGAGACGTTTGTTTTGCTTTTCCTGAACTTTGGATCGCCAGCTTACTTGGTCTTCTTGATGTTGTAGGGTTGATAAAGACAGGAGTGGAGTGATATCGGACACCGAGCTTCAGCAAGCTCTCTCCAACGGTGAGTGGGCCCGTGGGACCTGGG--TCCGGACCCA
i macFas5.chr6             C 0 I 41
s papAnu2.chr6                 31466 899 + 174439528 ccccgacccctgcggccgcgcccgtcccctgccgggtcccctgtggccgcccccgtcccctgcgggtcccctgtggccgcccccgtcccctgtgggtctcctgtggccgcccccgtcccctgcgggtcccctgcggccgcccccgtcccctgt-gggtctcccgcggccgcccccgcctcctgccccgtccctgtcctgTGCGTTGGGCCCTTCCAGAGGTGCAGAGTA--GCCGCTGCAGACCCGAGGTCGCGGCCACCGGCTCCCGGGCTAGGCCCTTTTTCTCGCCTCAGGAGCCGCCGGGCGGAGGGTCTCCAGGGGTGCTTGTTCGGGGAAAGCAGAGACA----GCCTGGGC-GCTGTT-AAGTGTCAGCAGCCGAGGAAGCAGCAGCGACCTGGCGTCTGCTCGGGGCAGGTGACCTTTCCGGCGGCGCCTTCTGTCCCGGGTCGCTTTTCCACGGAACGAATGACCGAAACTGGAGTGACTCATGGCCAGGGAATGCCGTAGTTATCTGAGGGAA-----TCTTGTTTGTGAAAAAGGGAAACTGGTGCAAATGGGAATTCAGACAGgccaggagaggaaggaagggaaggattG------------AGAAAGAAAGATGATTGGCCTCTTAGGGGAAGACCCCGCTTGGACGTGGGCTCCTGGGGCACTTCCTTGATTCCCGTG---TCCTCAGCGGGATGGGAGAGGCGGAGGTTCCAGGAGGCTCCGAGCCTTCCAGAGTCGGTGCAGGGTTGACAGGAGacgtttgttttgcttttcctgaACTTTGGATCGCCAGCTTATTTGGTCTTCTTGATGTTGTAGGGTTGATAAAGACAGGAGTGGAGTGATATCGGACACCGAGC-TCAGCAAGCTCTCT-CAACGGTGAGTGGGCCAGTGGGACCTGGG--TCCGGACCGa
i papAnu2.chr6             C 0 M 570
s chlSab2.chr4              89532770 824 -  91010382 CCCCGACC---------------------------GACGGACGCGGCCGCGCCCGTCCCCTGC-----------------------------------------------------------CGGGTCCCCTGCGGTCTCCCCCGCCCCCTGT-GGGCCCCCTGTGGCCGCCCCCGCCTCCTGCCCGGTCCCTGTCCTGTGCGTTGGGCCCTTCCAGAGGTGCAGAGTA--GCCGCTGCAGACCCGAGGTCGCGGCCACCGGCTCCTGGGCTAGGCCCTTTTTCTCGCCTCAGGAGCCGCCGGGTGGAGGGTCTCCAGGGGTGCTTGTTCGGGGAAAGCGGAAACGGACTGCCTGGGC-GCTGTT-AAGTGTCAGCAGCCGAGGAAGCAGCAGCGACCTGGCGTCTGCTCGGGGCAGGTGACCTTTAC-GCGGCGCCTTCTGTCCCGGGTCGCTTTTCCACGGAATGAATGACCGAAACTGTAGTGACTCATGGCCAGGGAATGCCTTAGTTATCTGAAGGAATCTTTTCTTGTTTGTGAAAAAGGGAAACTGGTGCAAATGTGAATTCAGACAGGCCAGGAGAGGAAGGAAGGGAAGGATTG------------AG--AGAAAGATGATTGGCCTCTTAGGGGAAGACCCCGCTTGGACGTGGGCTCCGGGGGCACTTCCTTGATTCCCGTGTCCTCCTCAGCGGGATGGGAGAGGCGGGGGTTCCCGGAGGCTCCGAGCCTTCCAGAGTCGGTGCAGGGTTGACAGGAGACGTTTGTTTTGCTTTTCCTGAACTTTGGATCGCCAGCTTATTTGGTCTTCTTGATGTTGTAGGGTTGATAAAGACAGGAGTGGAGTGATATCGGACACCGAGCTTCAGCAAGCTCTCTCCAACGGTGAGTGGGCCAGTGGGACCTGGG--TCCGGATCCA
i chlSab2.chr4             C 0 C 0
s calJac3.chr2                179169 799 - 204313951 ccccgaccctcgcgtccgcccccgtcccctgccctgacttccgtggccaaccccgtctcctgc-----------------------------------------------------------ggcgaccctcgt-------------------------------ggccgcccccgcctcctgcccGGTCCCTGGCCCGTGCCTCGGGCCCTTATCGAGGTGCAGAGTCT-GCCACTGCAGCCCCGAGGTCGCGGCCCCAGGCTTCTGGGCTAGGCCCGTTTTCTCGCCCCGAGAGCAGCCAGGTCGAGGGTCTCCGGGGGTGCCTGTTTGGGGAAAGCAGAAGCAGACTGCCTGGGC-GCTGTTAAAATGCCGGCAGCCGAGGAAGAAGCTGAGATCTGGCGTCTGCTTGGGGCAGGTGACCTTTACGACGGCGAC-TCTGTCCCTGGTCTCTTTTCCAC----TGATTGACCGAAACT--AGTGACTCATGGCCAGGGAATGGCTCAGTTGTCTGAGAA----TTTTTTTGTCTATGAAATAGGGAAAGTGGTGGAGGTGTGAATTCAGATATGCCAGGAGAGGAAGGAAGCGAAGGACCG------------AG--------------GATCTCTTAGGGGAAGACCACGCTTGCGCTTCGGCCCCTGGGGCACTTCCTTTATCCCCGGTTCTCCTCCCGCAGGATGGAAGAGGCGGAGGTTCCAGGACG----GAGCCTTCCAGACTCAGTGCAGGGCTGACAGGAGACGTTCGTTTTGCTTTTTCTGCGCTTTGGATCGTCAGCTCATTTGGTCTTTTTGATGTCATAGGGTTGATAAAGACAGAAGTGGAGTGATATCGGACAGCGAGCTTCAGCAAGCACTCTCCAACGGTGAGTGGGCCAGTGGGGCCTGGGCCTGCGAACCTA
i calJac3.chr2             C 0 C 0

a score=84085.000000
s hg38.chr3_KI270935v1_alt      6826 64 +    197351 GAAGCCG----------------------------------CGAGCCTGCCCTGCTCACAGTGGATAACTTTCTTTCTGAAGTTGATTTTCCAAGGAC
s panTro4.chr3                630968 64 - 202329955 GAAGCCG----------------------------------CGAGCCTGCCCTGCTCACAGTGGATAACTTTCTTTCTGAAGTTGATTTTCCAAGGAC
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199660373 64 + 202140232 GAAGCCG----------------------------------CTAGTCTGCCCTGCTCACAGTGGATAACTTTCTTTCTGAAGTTGATTTTCCAAAGAC
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120769803 64 + 123690457 GAAGCCG----------------------------------CGAGCCTGCCCTGCTCACAGTGGGTAACTTTCTTTCTGAAGTTGATTTTCCAAGGAC
i nomLeu3.chr11            C 0 C 0
s macFas5.chr6             179963638 98 - 181584905 GAAGCCGCTGAGTGGGCCCGTGGGACCTGGGTCCGGACCCAGAAGCCTGCTCTGCTCGCAGTGGATAACTTTCTTTCTGAAGTTCATTTTCCAAGGAC
i macFas5.chr6             I 41 C 0
s chlSab2.chr4              89533594 57 -  91010382 -----------------------------------------GAAGCCTGCTCTGCTCACAGTGGATAACTTTCTTTCTGAAGTTCATTTTCCAAGGAC
i chlSab2.chr4             C 0 C 0
s calJac3.chr2                179968 46 - 204313951 GAAGCCT----------------------------------CGAGCCTGCTGTGCTCG------------------CTGGAGTTGATTTTCCAAGGAC
i calJac3.chr2             C 0 I 309
e papAnu2.chr6                 32365 570 + 174439528 M

a score=730093.000000
s hg38.chr3_KI270935v1_alt      6890 434 +    197351 AAAGGAATCATTAGGACAAATTATTA---CTGCTTCATGGTGGAGATGCTTCTGGTTTATTTTGTGGCTACCGCTGTTACTGCTTGGAGTGCCTCACCGAGCCAGCTAACAACGGCGTGCGTGAGCGCAGGGAAAGGCTTCTTGAGAAATGAAAACTAGGTTGTAGG-TTTAGGAGGGGAATAGGAAGGTTAGCTCTGTCCAGCCGAAAGCCTTTTGGTAAGTTGGGGGTCCTTGAATTTCCTGGGTGACTGCATCTTGGTGACTTCTCTGAATAGACCTTCGAGGGCA--------------------CTGGGGGGTGATTGTTGGAGGGCTTGGGGAGCTCAGGCAGCACTTGTGTGGGAACGTGGCTGTTACAGGAACTGCAGAAACTGGGACTGGGTTCCTGGGGAAAGGATTGGGGGTGTTGGAGGCGCTGGCAGGGGAGTTAT-GGGGAGGCG
s panTro4.chr3                631032 437 - 202329955 AAAGGAATCGTTAGGACAAATTATTATTACTGCTTCATGGTGGAGATGCTTCTGGTTTATTTTGTGGCTACCGCTGTTACTGCTTGGAGTGCCTCACCGAGCCAGCTAACAACTGCGTGCGTGAGCACAGGGAAAGGCTTCTTGAGAAATGAAAACTAGGTTGTAGG-TTTAGGAGGGGAATAGGAAGGTTAGCTCTGTCCAGCCGAAAGCCTTTTGGTCAGTTGGAGGTCCTTGAATTTCCTGGGTGACTGCATCTTGGTGACTTCTCTGAATAGACCTTCAAGGGCA--------------------CTGGGGGGTGATTGTTGGAGGGCTTGGGGAGCTCAGGCAGCACTTGTGTGGGAACTTGGCTGTTACAGGAACTGCAGAAACTGGGACTGGGTTCCTGGGGAAAGGATTGGGGGTGTTGGAGGCGCTGGCAGGGGAGTTAT-GGGGAGGCG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199660437 437 + 202140232 AAAGGAATCATTAGGACAAATTATTATTACTGGTTCATGGAGGAGATGCTTCTGGTTTATTTTGTGGCTACCGCTGTTACTGCTTGGAGTGCCTCACCGAGCCAGCTAACAACTGCGTGCGTGAGCACAGGGAAAGGCTTCTTGAGAAATGAAAACTAGGTTGTAGG-TTTAGGAGGGGAATAGGAAGGTTAGCTCTGTACAGCCGAAAGCCTTTTGGTAAGTTGGACGTCCTTGAATTTCCTCGGTGACTGCATCTTGGTGACTTCTCTGAATGGACCTTCGAGGGCA--------------------CTGAGGGGTGATTGTTGGAGGGGTTGGGGAGCTCAGGCAGCACTTGTGTGGGAACGTGGCTGTTACAGGAACTGCAGAAACTGGGACTGGGTTCCTGGGGAAAGGACTGGGGGTGTTGGAGGCGCTGGCAGGGGAGTTAT-GGGGAGGTG
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120769867 437 + 123690457 AAAGGAATCATTAAGACAAATTATCATTACTGCTTCATGGTGGAGATGCTTCTGGTTTATTTTGTGGCCACCACTGTTACTGCTTGGAGTGCCTCACCGAGCCAGCTAACAACTGCGTGCGTGAGCACAGGGAAAGGCTTCTTGAGAAATGAAAACTAGGCTGTAGG-CTTGGGAGGGGAATAGGAAGGTTAGCTCTGTACAGCCGAAAGCCTTTTGGTAGGTTGGAGGTCCTTGAATTTCCTCAGTGACTGCATCTTGGTGACTTCTCTGAATAGACCTTCGAGGGCA--------------------CTGGGGGGTGATTGTTGGAGGGCTTGGGGAGCTCAGGCAGCATTTGTGTGGGAACGTGGCTGTTACAGGAACTGCAGAAACTGGGACTGGATTCCTGGGGAAAGGATTGGGGGTGTTGGAGGCGCTGGCAGGGGAGTTAT-GGGGAGGTG
i nomLeu3.chr11            C 0 C 0
s macFas5.chr6             179963736 434 - 181584905 AAAGGGATCATTAGGACAAAGTATTATTACTGCTTCATGGTGGAGATGCTTCTGGTTTCTGTTGTGGCTGCCGCTGTTA---TTTGGAGTGCCTCACCAAGCCGGCTGACAACTGCGTGCATGAGCACAAGGAAAGGCTTCTTGAGAAATGAAAACTAGGTTGTAGG-TTTAGGAGGGAAATAGGAAGCTTAGCTCTGTACAGCCGGAAGCCTTTTGGTAAGTTGGAGGTCCTTGAATTTCCTCGGTAACTGCATCTTGGTGACTTCTCTGAATAGACCTTCGAGGGCA--------------------TTGGGGGGTGGTGGTTGGAGGGCTTGGGGAGCTCAGGCAGCACTTGTGTGGGGACGTGGCTGTTACAGGAGCCGCAAACACGGGGACTGCATTCCTGGGGAAAGGATTGGGGGTGTTGGAGGCGCTGGCAGGGGAATTAT-GGGGAGGTG
i macFas5.chr6             C 0 C 0
s chlSab2.chr4              89533651 433 -  91010382 AAAGGGATCATTAGGACAAAGTATTATTACTGCTTCATGGTGGAGATGCTTCTGGTTTGTGTTGTGGCTGCCGCTGTTA----TTGGAGTGTCTCACCAGGCCGGCTAACAACTGCGTGCATGAGCACAGGGAAAGGCTTCTTGAGAAATGAAAACTAGGTTGTAGG-TTTAGGAGGGGAATAGGAAGCTTAGCTCTGTACAGCCGGAAGCCTTTTGGTAAGCTGGGGGTCCTTGAATTTCCTCGGTAACTGCATCTCGGTGACTTCTCTGAATAGACCTTCGAGGGCA--------------------TTGCGGGGTGATTGTTGGAGGGCTTGGGGAGCTCAGGCAGCACTTGTGTGGGAACGTGGCTGTTACAGGAGCCGCAGAAACGGGGACTGCATTCCTGGGGAAAGGATTGGGGGTGCTAGAGGCGCTGGCAGGGGAATTAT-GAGGAGGTG
i chlSab2.chr4             C 0 C 0
s calJac3.chr2                180323 434 - 204313951 aaaagaGCCATCAAGACACGTTATTATTACCGCTTCATGGTGGAGATGCTTCTGGTTTATTTT-----------------------GAGTGCCTCACCGAGCCAGCTAACAGCTGCGTGCGTGAGCACAGGGAAAGGCTTCTTGAGAAATGAAAACTAGGGTGTGGGTTTTAGGAGGGGGGTAGGAAGATTAGCTCTG--CAGCAGAAACCCTTTTGGTAAGTTGGAGGTCCTTGAATTTCCTCGGTGACTGCACCTTGGTGACTTCTCTGCATAGACCATCGAGGGCACTAAAGGGTTACCAGGCGGCCTGGGAGGTGATTGTTGGAGGGCTTGAGGAACTCAAGCAGCACTTGTGTGGGAATGTGACTGCTGCAGGAACTGCAGATACCGGGACTGGGTTCTGGGGGAAAGGACTGGGGGTGTTGGAGGTGCAGGCAAGGGATTTATGGGGGAGGTG
i calJac3.chr2             I 309 C 0
e papAnu2.chr6                 32365 570 + 174439528 M

a score=2130378.000000
s hg38.chr3_KI270935v1_alt      7324 968 +    197351 TTCTTATCAGTGTGCGAATATTGGGCGTTCAGGCAGCGGGAAATCTGGGTCCTTGGCGTGTTGTGAGCTCCCTGGAGTTACGTTCTTGCCAGTTTCAGCTCAATTGATCCCCCTCCCCTGAGCTATCATTGGATACATTTTACTTCATTGAACACCTGACTGCTGCTTTTTCTGTAATCCCTCAGGGGCAGTCATCTTTTCTGATTCTGTGTATAGTTTG-CCTTTCCAGAT-CCGTGCCATTTAAGCTAGAAAAGGGGTCAGTTTTGAGATGTTGTGAAAATGTTGAAAGGCTCCTCGTTATTAGTGGGAAGTATCTGATGTTGCCAGAGACTGAA-CTGGGGCGCGGGGAGCACTACGGCTGCTAGACACTGCCTCACTGCG-CTGTGGGTGGTG----GGGGGGGAGG-TGCTGGATTCAGTCTTACTGCCTAATGATTTGTGAGGATTTGTGTTTTCAGAGTAACATGTTTACCTTATGTT-----ATCAGTTCCTAATATGTGACGTATGGGCCACAGATGCTGGTGTATTATTTCACATGCATTTATATAGATTGTTTTCAGGGAATTCAGAAATTCTGTTATCTCTACACTAGTGATTGTGCTTTCTTGATTTTTCTCTTTTCATTATTCTTAAATCCTCCTTTTTT-TATTTGCATCT----CAGTTTATTTATACTCGGG--AAGTGCAAGACATGGCGACTAGAAAGAGATGTCAAGAGAACCCGGAATCCAGTAGGCTACAATTTGGCAAATCTTAGCTTAAAACTTCCTAAATGTTGACCACAGTGGATGCAAATGGCTCTGT-----GCATCGTCTGTTCAATATGGTCAGGTGACCACCCAGGTTCACGTGGTTTGTCACCAGGGTGATACGAGCCACACGGAGTGCCCTCCTCAGAGGCCATGTCTCAGAGACGTTTATTTTGAGTGGTTTTCCAGCGAGTGATGCAAGATTTATGATCCATTTTAACAG-CTGCTTTTT
s panTro4.chr3                631469 971 - 202329955 TTCTTATCAGTGTGCGAATATTGGGCGTTCAGGCAGCGGGAAATCCGGGTCCTTG-CGTGTTGTGAGCTCCCTGGAGTTACGTTCTTGCCAGTTTCAGCTCAATTGATCCCCCTCCCCTGAGCTATCATTGGATACATTTTACTTCATTGAACACCTGACTGCTGCTTTTTCTGTAATCCCTCAGGGGCAGTCATCTTTTCTGATTCTGTGTATAGTTTG-CCTTTCCAGAT-CCGTGCCATTTAAGCTAGAAAAGGGGTCAGTTTTGAGATGTTGTGAAAATGTTGAAAGGCTCCTCGTTATTAGTGGGAAGTATCTGATGTTGCCAGAGACTGAA-CTGGGGCGCGGGGAGCACTACGGCTGCTAGACACTGCCTCACTGCG-CTGTGGGTTGGGCGGCGGGGGGGGGG-TGCTGGATTCAGTCTTACTGCCTAATGATTTGTGAGGATTTGTGTTTTCAGAGTAACATGTTTACCTTATGTT-----ATCAGTTCCTAATATGTGACGTATGGGCCACAGATGCTGGTGTATTATTTCACATGCATTTATATAGATTGTTTTCAGGGAATTCAGAAATTCTGTTATCTCTACACTAGTGATTGTGCTTTCTTGGTTTTTGTCTTTTCATTATTCTTAAATCCTCCTTTTTT-TATTTGCATCT----CAGTTTATTTATACTCGGG--AAGTGCAAGACATGGCGACTAGAAAGAGATGTCAAGAGAACCCGGAATCCAGTAGGCTACAATTTGGCAAATCTCAGCTTAAAACTTCCTAAATGTTGACCACAGTGGATGCAAATGGCTCTGT-----GCATCGTCTGTTCAATATGGTCAGGTGACCACCCAGGTTCACGTGGTTTGTCACCAGGGTGATACGAGCCACACGGAGTGCCCTCCTCAGAGGCCATGTCTCAGAGACGTTTATTTTGAGTGGTTTTCCAGCGAGTGATGCAAGATTTATGATCCATTTTAACAG-CTGCTTTTT
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199660874 965 + 202140232 TTCTTACCAGTGTGCGAATACTTGGCGTTCAGGCAGCGGGAAATCCGGGTCCTGG-CGTGTTGTGAGCTCCCTGGAGTTACGTTCTTGCCAGTTTCAGCTCAACTGATCCCCCTCCCCTGAGCTGTCATTGGATACATTTTACTTCATTGAACACCTGACTGCTGCTTTTTCTGTAATCCCTCAGGGGCAGTCATCTTTTCTGATGCTGTGTATAGTTTG-CCTTTCCAGAT-CCGTGCCATTTAAGCTAGAAAAGGGGTCAGTTTTGAGATGTTGTGAAAATATTGAAAGGCTCCTCATTATTAGTGGGAAGTATCTGATGTTGCCAGAGACTGAA-CTGTGGTGCGGGGAGCACTATGGCTGCTAGACACTATCTCACTGCA-CTGTGGGTGGGG------------GG-TGCTGGATTCAGCCTTACTGCCTAATGATTTGTGAGGATTTGTGTTTTCAGAGTAACATGTTTACCTTATATTATGACATCAGTTCCTAATATGTGACGTGTGGGCCACAGATGCTGGTGTATTATTTCACATGCATTTATATAGATTGTTTTCAGGGAATTCAGAAATTCTGTTACCTCTACACTAGTGATTGTGCTTTCTTGATTTTTCTCTCTTCATTATTCTTAAATCCTCCTTTTTT-TATTTGAATCT----CAGTTCATTTATGATCGGG--AAGTGCAAGACACGGCTACTAGAGAGAGATGTCAAGAGAACCCGGAATCCAGTAGGCTACAATTTGGCAAATCTTAGCTTAAAACTTCCTAAATGTTGACCACAGTGGATGCAAATGGCTCCGT-----GCATCATCTGTTAAATATGGTCAGATGACCACCCAGGTGCAAGTGGTTTGTCACCAGGGTGATACGAGCCACACGGAGTGCCCTCCTCAGAGGCCATGTCTCAGAGATGTTTATTTTGAGTGGGTTTCCAGTGAGCGATGCAAGGTTTATGATTGATTTTAACAGCCTGCTTTTT
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120770304 961 + 123690457 TTCTTATCAGTGTGCGAATACCTGGCGTTCAGGCAGCGGAAAATCCGGGTCCTTG-CGTGTTGTGAGCTCTCTGGAGTTACGTTCTTGCCAATTTCAGCTCAATTGATCCCCCTCCCCTGAGCTATCATTGGATACATTTTACTTCGTTGAACATCTGACTGCTGCTTTTTCTGTAATCCCTCAGGGGCAGTCATCTTTTCTGATTCTGTGTATAGTTTG-CCTTTCCAGAT-CCGTGCCATTTAAGCTAGAAATGGGGTCAGTTTTGAGATGATGTGAAAATGTTGAAAGGATCCTTGTTATTAGTGGGAAGTATCTGATGTTGCCAGAGACTGGACCTGGGGCACGGGGAGCACTACGGCTGCTAGACACTGCCTCACTGCG-CTGTGGGTGGGG------------GG-TGCTGGATTCAGCCTTACTGCCTAATGATTTGTGAGGATTTGTGTTTTCAGAGTAACATGTTTACCATATGAC-----ATCAGTTCCTAATATGTGACGTGTGGGTCACAGATGCTGGTGTATTATTTCACATGCATTTGTGTAGATTGTTTTCAGGGAATTCAGAAATTCTGTTATCTCTACGCTAGTGATTGTGCTTTCTTGATTTTTCTTTTCTCATTATTCTTAAATCCTCCTTTTTT-TATTTGCATCT----CAGTTCATTTATACTCGGG--AAGTGCAAGACGTGGCTACTAGAAAGAGATGTCAAGAGAACCTGGAATCCAGTAGGCTACAATTTGGCAAATCTTAGCTTAAAACTTCCTAAATGTTGACCACAGTGGATGCAAATGGCTCTGT-----GCATCATCTGTTAAATATGGTCAGATGACCACCCAGGTTCAAGTGGTTTGTCACCAGGGTGATACGAGCCACACGGAGTGCCCTCCTCAGAGGCCATGTCTCAGAGACATTTATTTTGAGTGGTTTTCCAGTGAGTGATGCAAGATTTATGATCTATTTTAACAGCCTGCTTTTT
i nomLeu3.chr11            C 0 C 0
s macFas5.chr6             179964170 966 - 181584905 TTCTTATCAGTGTGCGAATACTGGACGTTCAGGCGGC-GGAAATCCGGGTCCTTG-GGTGTTGTGAGCTCCCTGGAGTTACCTTCTTGCCAGTTTCAGCTCAATTGATCCCCCTCCCCTGCGGTATCATTGGACACATTTTACTTCATTGAACACCTGACTGCGGCTTTTTCTGTAATCCCTCAGGGGCAGTCATCTTTTCCGATTCTGTGTATAGTTTG-CCTTTCCAGAT-CCGTGCCATTTAAGCTAGAAAAGGGGTCGGTTTTGAGATGTTGTGAAAATGTTGAAAGGCTCCTCGTTATTAGTGGGAAGTACCTGATGTTGCCAGAGACTGGA-CTGGGGCGCGGGGAGCACTACGGCTGCTGGACACTGCCTCACTGCG-CTGTGCGTGGGG------------GGATGCCTCATTCAGCCTTACTGCCTAATGATTTGTGAGGATTTGTGTTTTCACAGTAACATGTTTACCTTATATTCTGACATCAGTTCCTGATACGTGACGTGTGGGCCACAGATGCTGGTGTATTATTTCACATGCATTTATATAGATTGTTTTCAGGGAATTCAGAAATTCTGTTATCTCTGCTCTAGTGATTGTGCTTTCTTGATTTTTCTCTTTTCATTATTCTTAAATCCTCCTTTTTTAAATTTGCATCT----CGGTTCCTTTATACTTGGG--AAGTGCAAGACATGGCTACTGGAAAAAGATGTCAAGAGAACCTGGAATCCAGTAGGCTACAATTTGGCAAATCTTAGCTTAAAACGTCCTAAATGTTGACCACAGTGGGTGCAGATGGCTCTGT-----GCATCATCTGTGAAATGTGGTCAGATGACCACCCAGGTTCAAGTGGTTTGTCACCAGGGTGGTACGAGCCACACAGAGTGCCCTCCCCAGAGGCCATGTCGCGGAGACATTTATTTTGAGTGGTTTTCCAGTGAGTGATGCAAGATTTATGATCCATTTTAACAGCCTGCTTTTT
i macFas5.chr6             C 0 C 0
s papAnu2.chr6                 32935 965 + 174439528 TTCTTATCAGTGTGCGAATACTGGGCGTTAAGGCGGCGGGAAATCCGGGTCCTTG-GGTGTTGTGAGCTCCCTGCAGTTA-GTTCTTGCCAGTTTCAGCTCAATTGATCCCCCTCCCCTGCGGTATCATTGGACACATTTTACTTCATTGAACACCTGACTGCAGCTTTTTCTGTAATCCCTCAGGGGCAGTCATCTTTTCCGATTCTGTGTATAGTTTC-CCTTTCCAGAT-CTGTGCCATTTAAGCTAGAAAAGGGATCAGTTTTGAGATGTTGTGAAAATGTTAAAAGGCTCCTCGTTATTAGTGGGAAGTATCTGATGTTGCCAGAGACTGGA-CTGGGGCGCGGGGAGCACTATGGCTGCTGGACACTGCCTCACTGCG-CTGTGCGTGGGG------------GG-TGCTTCATTCAGCCTTACTGCCTAATGATTTGTGAGGATTTGTGTTTTCACAGTAACATGTTTACCTTATATTCTGACATCAGTTCCCGATATGTGACGTGTGGGCCACAGATGCTGGTGTATTATTTCACATGCCTTTATATAGATTGTTTTCAGGGAATTCAGAAATTCTGTTATCTCTGCTCTAGTGATTgtgctttcttgatttttctcttttcattattcttaaatcctccttttttaaatttgcatct----cAGTTCCTTTATACTTGGG--AAGTGCAAGACATGGCTACTGGAAAAAGATGTCGAGAGAACCTGGAATCTAATAGGCTACAATTTGGCAAATGTTAGCTTAAAACGTCCTAACTGTTGACCACAGTGGATGCAGATGGCTCTGT-----GcatcatctgtgaaatgtggTCAGAtgaccacccaggttcaagtggtttgTCACCAGGGTGGTACGAGCCACACAGAGTGCCCTCCCCAGAGGCCATGTCGCAGAGACGTTTATTTTGAGTGGTTTTCCAGTGAGTGATGCAAGATTTATGATCCACTTTAACAGCCTGCttttt
i papAnu2.chr6             M 570 C 0
s chlSab2.chr4              89534084 962 -  91010382 TTCTTATCAGTGTGCGAATACTGGGCGTTCAGGCGGCGGGAAATCCGGGTCCTTG-GGTGTTGTGAGCTCCCTGGAGTTACCTTCTTGCCAGTTTCAGCTCAATGGATCCCCCCTCCCCTGGGAA-----GGTCACGTTTTACTTCATTGAACACCTGACTGCCGCCTTTTCTGTAATCCCTTGGGGGCAGTCATCTTTTCTGATTCTGTGTATAGTTTC-CCTTTCCAGAT-CCGTGCCATTTAAGCTCGAAAAGGGGTCGGTTTTGAGATGTTGTGAAAATGTTGAAAGGCTCCTCGTTATTCGTGGGAAGTACCTGATGTTGCCAGAGACTGGA-CTGGGGCGCGGGGAGCACTAGGGCTGCTGGACACTGCCTCACTGCG-CTGTGCGTGGGG------------GGATGCTTCATTCAGCCTTACTGCCTAATGATTTGTGAGGATTTGTGTTTTCACAGTAACATGTTTACCTTATATTCTGACATCAGTTCCTGATATGTGACGTGTGGGCCACAGATGCTGGTGTATTATTTCACATGCATTTATATAGATTGTTTTCAGGGAATTCAGAAATTCTGTTATCTCTGCTCTAGTGATTGTGCTTTCTTGATTTTTCTCTTTTCATTATTCTTAAATCCTCCTTTTTTAAATTTGCATCT----CAGTTCCTTTATACTTGGG--AAATGCAAGGCATGGCTACTGGAAAAAGATGTCAAGAGAACCTGGAATCCAGTAAGCTACAATTTGGCAAATCTTAGCTTAAAACGTCCTAAATGTTGACCACAGTGGATGCAGATGGCTCTGT-----GCATCATCTGTGAAATGTGGTCAGACGACCACCCAGGTTCAAGTGGTTTGTCACCAGGGTGATACAAGCCTCACAGAGTGCCCTCCCCAGAGGCCATGTTGCAGAGACATTTATTTTGAGTGGTTTTCCAGTGAGTGATGCAAGGTTCATGATCCATTTTAACAGCCTGCTTTCT
i chlSab2.chr4             C 0 C 0
s calJac3.chr2                180757 971 - 204313951 TTCTTATCAGTGTGGGAATACTGGGCGTTCGGGCA---GGGAATCTGGGTCCTTG-CG-ACTGGGGGCTCTCTGGAGTTACCTTCTTGCCAGTTTCGGCTCAGTTGAT-CCCCTCCCCTGCAGTACCTTTAGACACATTTTACTTCGTTGAACACCTGACTGC--CCGTTCCCGTATTCCCTCA--TGCAGTCATCTTTTCCCATCCAGTGTATAGTTTATCTTTTCCAGATCCCGTGCCATTTAAGCTGGAAAGGGGGTCAGTTTTGAGA---TGTGAAAATGTTGTGAGGCTCCTCTTTATTAGTGGGAAATATCTGACGATTCCAGAGATTGGA-CTGGGGTGCGGGGAGCATCATGGCTGCTAGACGCTGCCTCACTGTGACTGTGCTGCGGG----GGCGGGAGGG-GGCTGGATTCAGCCTTACTGCCTATTGATTTGTGAGGATTTGTGTTTTCAGAGTGACATGTTCACCTTGTATTCTGACAT--GTTCCTAATGTGTGATGTGTGGGCTACGGATGCTGGGGTATTATTTCACATGCATTTACGTAGACTGATTGCAGGGAACTAAGAAATTCTGTTGTCTCTGCACCAGTGATTGTGCTTTCTTGATTTTCCTCTTTTCATTATTCTTAAATCCCCCTTTTTA-AATTTGCATCTTTGCCAGTTCATTTATACTCGGGGTAAGTGCAGGACAGGGCCACTAGAAAAAGGCGCCAGGAGAAGCTGGAATCCAGTAGGCTGCAGTTTGGCAGATCATAGCTTAAACCGTCCTAAATGTTGACCACAATAGATGCAAGTGGCTCTGTGTGTCGCATCACATGTTAAATACAGTCAGATGACCACCCAGGTTCACGTGGTTCATCACT--GGTGATACAAGCCCCACGGAGTGCCCTCCTCAGCGGCCATGTCTCAGAGATGTTCATTTTGAGAGGTTTTCCAGTGAGTGATGCAAGATTTATGATCCATTTTAGCAGCCTGCttttt
i calJac3.chr2             C 0 I 1023

a score=1329672.000000
s hg38.chr3_KI270935v1_alt      8292 766 +    197351 ATGCATTTGCTCAAATTTTTAGATTTTAAGTTTAGTTTTAGGTTTTCTGTT-AATTTGCTCAACTAGGAGTGGTGGTCAAATACTGGACCTCATTAGCATGGTAGCCTGCCCTCCTTGGCAGGCTCCACTGGAGTGCCTTGGGGCCTGCCTGGATTCCAGTCCTGGCTCTACCAGTTTTGTGTcctcgccgttact-gggagggagtattgaggaaatgcatgcgaggtgcct-ccgtgattcctggcacggagcaagtgctcagtaattgtcagctgtgagtattAGTAGTAGCTAATACACTACTACTATTCTTGGCTAACAAGCCAGCTCAAAGCTTTGATGGTTTTCCATTACCTGATGATGGTGATGATGGTTTCCACTTCCTGAACACTCACACCCCTGGGCTAGGCACTTAACCCAAATCCAAGGTCAGCGTTATTgtttggaggt--gggggagacacctcctgctctgactcgtgtgtttgggttcccgtattttcaccagagggtgttagtcctgccccagttcagctggtcctcaaagcgtatatagctctttaaccctcagcaagtgtcagtcagaacataatcttgatttcagctgctactaaatatctaccaggagcctgcttgagagagagaattgcctgacaggtgctgagtccaccattcctgagatactttgaaatcagtgtctggcttaacccaagctgtgtatggggaccctctcaccgtggtcccaatggagtcgcttttGTTAGGCGCC
s panTro4.chr3                632440 766 - 202329955 ATGCATTTGCTCAAATTTTTAGATTTTAAGTTTAGTTTTAGGATTTCTGTTAAACTTGCTCAACTAGGAGTGGTGGTCAAATACTGGACCTCATTAGCATGGTCGCCTGCCCACCTTGGCAGGCTCCACTGGAGTGCTTTGGGGCCTGCCTGGATTCCAGTCCTGGCTCTACCAGTTTTGTGTcctcgccgttact-gggagggagtattgaggaaatgcatgcgaggtgctt-ccgtgattcctggcacggagcaagtgctcagtaattgtcagctgtgagtattAGTAGTAGCTAATACACTACTACTATTCTTGGCTAACAAGCCAGCTCAAAGCTTTGATGGTTTTCCATTACCTGATGATGGTGATGATGGTTTCCACTTACTGAACACTCACA-CGCTGGGCTAGGCACTTAACCCAAATCCAAGGTCAGCGTTATTgtttgggggt--gggggagacacctcctgctctgactcgtgtgtttgggttcccgtattttcaccagagggtgttagtcctgcccaagttcagctggtcctcaaagcatatatagctctttaaccatcagcaagtgtcagtcagaatgtaatcttgatttcagctgctactaaatatctaccaggagcctgcttgagagagagaattgcctgacaggtgctgagtccaccattcctgagatactttgaaatcagtgtctgacttaacccaagctgtgtatcgggaccctctcaccatggtcccaatggagtcgcttttGTTAGGCGCC
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199661839 767 + 202140232 ATGCATTTGCTGAAATTTTTAGATTTTAGGTTTAGTTTTAGGTTTTCTGTTAAACTTGCTGAACTAGGAGTGGTGGTCAAATACTGGACCTCATTAGCATGATAGCCTGCCCACCTTGGCAGGCTCCACTGGAGTGCTTTGGGGCCCGCCTGGATTCCAGTCCTGGCTCTACCAGTTTTGTGTcctcgccattact-gggagggagtattgaggaaatgcatgtgaggtgtttcccgtgattcctggcacagagcaagtgctcagtaattgtcagctgtgaatattAGTAGTAGCTGATACACTACTACTGTTGTTGGCTAACAAGCCAGCTCAAAGCTTTGATGGTTTTCCATTACCTGACGACGGTGATGATGGTTTCCACTTACTGAACGCTCACA-CGCTGGGCTAGGCACTTAACCCAAATCCAAGGTCAGCGTTATTGTTTGGGGAT--GGGGGAGACACCTCCCGCTCTGACTTGTGtgtttgggttcccgtattttcaccagagggcgttagtcctgccccagttcagctggtcctcaaagcatatatagctctttaaccatcagcaagtgtcagtcagaacataatcttgatttcaactgctactaaatatctaccaggagcctgcttgagagacagaattgcctgacaggtgacgagtccaccattcctgagatactttgaaatcagtgtctggcttaacccaagctgtgtatcgggaccctctcaccgtggtcccaatggagtcactttTCTTAGGCGCC
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120771265 767 + 123690457 ATGCATTTGCTCAAATTTTTAGATTTTAGGTTTAGTTTTAGGTTTTGTGTCATACTTGCTCAACTAGGAGTGGTGGTCAAATACTGGACCTCATTAGCATGATAGCCTGCCCACCTTGGCAGGCTCcactggagtgc-ttggggcctgcctggattctagtcctggctctaccaGGTTTGTGTcctcgccgttact-gggagggagtattgaggaaatgcatgcgaggtgcttcccgtgattcctggcacagagcaagtgctcagtaattgtcagctgtgagtattAGTAGTAGCTAATACACTACCATTATTCTTGGCTAAGAAGCCAGCTCAAAGCTTTGATGG-TTTCCATTACCTGATGATGGTGATGATGGTTTCCAGGTACTGAACGCTCACACCGCTGGGCTAGGCGCTTAACCCAAATCCAAGGTCAGCATTATTGTTTGGGGTTC-GGGGGAGACAcctcctgctctgacttgtgtgtttgggttcccgtattttcaccagagggtgttagtcctgccccagttcagctggtcctcaaagcatatgtagctcttgaaccatcagcaagtgtcagtcagaacatcatcttgatttcagctggtactaaatatctaccaggagcctgcttgagagagagaattgcctgacaggtgctgagtccaccattcctgagatactttgaaatcagtgtctggcttaacccaagctgtgtatggggaccctctcaccgtggccccaatggagtcactttacttaggcgcC
i nomLeu3.chr11            C 0 C 0
s macFas5.chr6             179965136 768 - 181584905 ATGCGTTTGCTCAGGTTTTTAGATTTTAGGTTTAGTTTTAGGTTTTCTGTTAAACTTGCTCACCTAGGAGTGGTGGTCAAATACTGGACCTCATTAGCGTGAAAGCCTGCCCACCTTGGCAGGCTCCACTGGAGTGCTTTGGGGCCTGCCTGGATTCCAGTCCTGGCTCTACCAGTTTTGTGTcctcgctgttactgggggggggatattgaggaaatgcatgcgaggtgcttcccgtga-tcctggcatggagcaagtgctcagtgactgtcagctgcgattattAGTAGTGGCTAATACACGACCACTGTTCTTGGCCAACAAGCCCGCTCAAAGCTTTGATGGTTTTCCGTCACCTAATGATGGTGATGATGGTTTCCACTTACTGAACACTCACA-TGCTGGGCTAGGCACTTAACCCAAATCCAGGGTCAGCATTATTGTTTGGGGGTTGGGGGCAGACACCTCCTGCTCTGACTTGTGTGTttgggttcccatattttcaccagagggtgttagtcctgccccacttcagctggtcctcaaagcatatatagctctttaataatcagcaagtatctgtcagaacataatgttgatttcagctgctactaaatatctaccaggagcctgcttgagagagagaattgcctgacaggtgctgagtcccccattcctgagatactttgaaatgagtgtctggcttaacccaagctgtgcatcggga-cctctcactgtgttcccaatggagtcacttttCTTAGGCACC
i macFas5.chr6             C 0 C 0
s papAnu2.chr6                 33900 762 + 174439528 atgcgtttgcttaggtttttagattttaggtttagttttaggttttCTGTTAAACTTGCTCACCTAGGAGTGGTGGTCAAATACAGGACCTCATTAGTGTGAAAGCCTGCCCACTTTGGCAGGCTCCACTGGAGTGCTTTGGGGCCTGCCTGGATTCCAGTCCTGGCTCTACCAGTTTTGTGTCCTCGCCGTTACT-GGGAGGGAATATTGAGGAAATGCATGCGAGGTGCTTCCCGTGA-TCCTGGCATGGAGCAAGTGCTCAGTGACTGTCAGCTGCGGTTATTAGTAGTGGCTAATACACGACCACTGTTCTTGGCCAACAAGCCCGCTCAGAGCTTTAATGGTTTTCCATCAcctaatgatggtgatgatggtttcCACTTACTGAACACTCACA-CGTTGGGCTAGGCACTT-----AAATCCAGGGTCGGCATTATTgtttgggggttgggggcagaCACCTCCTGCTCTGACTTGTGTGTTTGGGTTCCCGTATTTTCACCAGAGGGTGTTAGTCCTGCCCCACTTCAGCTGGTCCTCAAAGCATATATAGCTCTTTAATCATCAGCAAGTATCTGTCAGAACATAATGTTGGTTTCAGCTGCTACTAAATATCTACCAGGAGCCTGCTTGAGAGAGAGAATTGCCGGACAGTTGCTGAGTCCCCCATTCCTGAGATACTTTGAAATGAGTGTCTGGCTTAACCCAAGCTGTGCATCGGGA-CCTCTCACTGTGTTCCCAACGGAGTCACTTTTCTTAGGCACC
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89535046 763 -  91010382 ATGCGTTTGCTCAGGTTTTTAGCTTTTAGGTTTAGTTGTAGGTTTTCTGTTAAACTTGCTCACCTAGGAGTGGTGGTCAAATACTGGACCTCATTAGCATGAAAGCCTGCCCACCTTGGCAGGCTCCACTGGAGTGCTTTGGGGCCTGCCTGGATTCCAGTCCTGGCTCTACCAGTTTTGTGTcctcgctgttact-gggagggaatattgaggaaatgcatgcgaggtgcttcccgtga-tcctggcacggagcgagtgctcagtgactgtcagctgcgattattAGTAGTGGCTAATACATGACCACTGTTCTTGGCCAACAAGCCTGCTCAAAGCTTTGATGGTTTTCCGTCACCTAATGATGG---TGATGGTTTCCACTTACTGAACACTCACA-TGCTGGGCTAGGCACTTAACCCAAATCCAGGGTCAGCATTATTGTTT-GGGGTTGGGGGCAGACACCTCCTGCTCTGACTTGTGTGTttgggttcccgtattttcaccagagggtgttagtcctgccccacttcagctggtcctcaaagcatatatagctctttaatcatcagcaagtatctgtcagaacataatgttggtttcagctgctactaaatatctaccaggagcctgcttgagagagagaattgcctgatgggtgctgagtccaccattcctgagatactttgaaatcagtgtctggcttaacccaAGCTGTGCATGGGGA-CCTCTCACTGTGTTCCCAATGGAGTCACTTTTCTTAGGCACC
i chlSab2.chr4             C 0 C 0
e calJac3.chr2                181728 1023 - 204313951 I

a score=353269.000000
s hg38.chr3_KI270935v1_alt      9058 173 +    197351 CCCCTTTACCTT-GGGCTCTGAGCTTCCTCTGCCTTTCATCTCTGCAGGATGAAGCCCCACTCGCCCTTCAGGATGC------------------AAAGCCCT-CCTCTATAAAGTGCATGCGG----ggccagatgcagtggctcacgtctgacctcccaacactttgggaggccgaggcagggggatc--------------gtttgag
s panTro4.chr3                633206 173 - 202329955 CCCCTTTACCTT-GGGCTCTGAGCTTCCTCTGCTTTTCATCTCTGCAGGATGAAGCCCCACCCGCCGTACAGGATGC------------------AAAGCCCT-CCTCTATAAAGTGCGTGCGG----ggccagatgcagtggctcacgtctgacctcccaacactttgggaggccgaggcagggggatc--------------gtttgag
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199662606 188 + 202140232 CCACTTTACCTTGGGGCTGTGAGCTTCCTCTGCCTTTCATCTCTGCAGGATGAAGCCCCACCTGCCCTTCAGGATGC------------------AAAGCCCT-CCTCTATAAAGTGCGTGCAG----Ggccagatgcagtggctcacatctgacctcccaacactttgggaggccgaggcagggggattgcttgagcccaggagtttgag
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120772032 188 + 123690457 CCCTTTTGCCTT-GGGCTCTGAGCTTCCTCTGCCTTTCATCTCTGCAGAATGAAGCCCCACCTGCCCTTCAGGATGC------------------AAAGCCCC-CCTCTATAAAATGCGTGCAG---Tggccaggtgcagtggctcacgtctgacctcccaacactttgggaggccgaggcaggggtatcgcttgagcccaggagtttgag
i nomLeu3.chr11            C 0 C 0
s macFas5.chr6             179965904 186 - 181584905 CCCCTTTACCTT-GGGCTCTGAGCTTCCTCTGCCTTTCATCTCTGTAGGATGAAG-CCCACTTGCCCTTCAGGATGC------------------AAAGCCCT-CTTCTCTAAAGTGCCTGCCG----ggccaggtgcagtggctcacgcctgacctcccaacactttgggaggccgaggcagggggatcgcttgagcacaggagtttgag
i macFas5.chr6             C 0 C 0
s papAnu2.chr6                 34662 186 + 174439528 CCCCTTTACCTT-GGGCTCTGAGCTTCCTCTGCCTTTCATCTCTgtaggatgaag-cccacttgccCTTCAGGATGC------------------AAAGCCCT-CTTCTCTAAAGTGCCTgccg----ggccaggtgcagtggctcacgcctgacctcccaacactttgggaggccaaggcagggggatcgcttgagcacaggagtttgag
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89535809 186 -  91010382 CCCCTTTACCTT-GGGCTCTGAGCTTCCTCTGCCTTTCATCTCTGTAGGATGAAG-CCCACTTGCCCTTCAGGATGC------------------AAAACCCT-CTTCTCTAAAGTGCCTGCCG----ggccaggtgcagtggctcacgcctgacctcccaacactttgggaggccaaggcagggggatcgcttgagcacaggagtttgag
i chlSab2.chr4             C 0 C 0
s calJac3.chr2                182751 196 - 204313951 CCCCTTTGCTTT-GAGCTCTTAGCTTCCACTGCCTTTCATCTTTGTAGGATGAAGCCCCACCCGCCCTTCAGGATGccagccttggcaacattgtaagaccttgtttctacaaaaagtaaacaatattagccaagtgtggtggtacatgcctatagtcctagctactcaggaggctgagataggaagatcacttgag--------------
i calJac3.chr2             I 1023 T 885

a score=78778.000000
s hg38.chr3_KI270935v1_alt      9231 41 +    197351 accagcctggacaacattgtgagaccctgttcctTGAATTG
s panTro4.chr3                633379 41 - 202329955 accagcctggacaacattgtgagaccctgttcctTGAATTG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199662794 41 + 202140232 accagcctgggcaacattgtgagaccctgttcctTGAATTG
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120772220 41 + 123690457 accagcctgggcaacattgtgagaccctgttcctTGAATTG
i nomLeu3.chr11            C 0 C 0
s macFas5.chr6             179966090 41 - 181584905 accagcctgggcaacattgtgaggccctgttcctTGAATTG
i macFas5.chr6             C 0 C 0
s papAnu2.chr6                 34848 41 + 174439528 accagcctgggcaacattgtgaggcCCTGTTCCTTGAATTG
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89535995 41 -  91010382 accagcctgggcaacattgtgaggccctattcctTGAATTG
i chlSab2.chr4             C 0 C 0
e calJac3.chr2                182947 885 - 204313951 T

a score=1729641.000000
s hg38.chr3_KI270935v1_alt      9272 802 +    197351 CCCTGGGAGATTTCCTCAGCTTGTACTGGAGGTGTGTGGCCCCATGAAGCCCATAGTCACCGTTCACCCTGAGAGACGCTGGCTTTGGGGCTGACACACCTGCTGCGGGGCAGCCCCAGGAGATGGCCACCCTGTTTCT-CCTGGAGCTGGAGCTGCG-CGTCTTCTCAGAAACTGTGGTGGCTGTCctgttttgtttgcatcttataaacc-tttacctgattacattttcctcttcaatttagctgctagaaaacttaaagtcagattggtggctcaccAGTAATGAGAGTTTAGAG---TAGAGGTAAACTTTATGACATAGTCTTAGA-CTCTTCACTTTCTCCTCAGCCAACATGATTCACATTTACTTTATTTTGCTGTACTGTGAGTGTCTTT-GTGTTTCCTGAATTCCTTCTGGAATAAGGCAGGTTGTTAGTAAGCACAGGTTTCTGGTCCATCTCATAGCCTCAGGCAGTGGGC---GGTGCTGTCCGTGCTCCCTTTCTGGGTTACCTGTGGTAGCTCTGAAGTTGCAGGGCTGCGATTTGAAGCCTGATTTAGTACACCGTGTTTCTGTTGTGTTCTGTGGTGGTTTGCTCCTCACATGTGAGCATTCACCCTGTGGCCCTGTGTTTTTCCACCACACCTCTGCCTGGTGGCATCCTACTGGATGTCTCAGCTGAGCCACTCTGTTCTGAAGATGCCCTTGTCCTCCACCCCTTTGCTTTGGGCTCTGAGCTTCTTCTGCCTTTCATCTCTGTAGGATGAAGCCCCACCCGCCCTTCAGGATGccagccttggcaacatt
s panTro4.chr3                633420 800 - 202329955 CCCTGGGAGATTTCCTCAGCTTGTACTGGAGGTGTGTGGCCCCATGAAGCCCATAGTCACCGTTCACCCTGAGAGACGCTGGCTTTGGGGCTCACACGCCTGCTGCGGGGCAGCCCCAGGAGATGGCCACCCTGTTTCT-CCTGGAGCTGGAGCTGCG-CGTGTTCTCAGCAACTGTGGTGGCTGTCCTGTTTTGTTTGCATCTTGTAAATC-tttacctgattacatttgcctcttcaatttagctgctagaaaacttaaagtcagattggtggctcgcCAGTAATGAGAGTTTAGAG---TAGAGGTAAACTTTATGACATAGTCTTAGA-CTCTTCACTTTCTCCTCAGCCAACATGGTTCACATTTACTTTATTTTGCTGTACTGTGAGTGTCTTT-GTGTTTCCTGAATTCCTTCTGGAATAAGGCAGGTTGTTAGTAAGCACAGGTTTCTGGTCCATCTTATAGCCTCAGGCAGTGGGT---GGTGCTGTCCGTGCTCCCTTTCTGGGTTACCTGCGGTAGCTCTGAAGTTGCGGGGCTGTGATTTGAAGCCTGATTTAGTACACCGTGTTTCTGTTGTGTTCTGTGGTGGTTTGCTCCTCACATGTGAGCATTCACC--GTGGCCCTGTGTTTTTCCACCACACCTCTGCCTGGTGGCATCCTACTGGATGTCTCAGCTGAGCCACTCTGTTCTGAAGATGCCCTTGTCCTCCACCCCTTTGCTTTGGGCTCTGAGCTTCTTCTGCCTTTCATCTCTGTAGGGTGAAGCCCCACCCACCCTTCAGAATGccagccttggcaacgtt
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199662835 802 + 202140232 CCCTGGGAGATTTCCTCAGCTTGTGCTGGAGGCATGTGGCCCCATGAAGCCCATAGTCACCGTTCACCCTGAGAGATGCTGGCTTTGGGGCTCACACGCCTGCTGTGGGGCAGCCCCAGGAGATGGCCACCCTGGTTCT-CCTGGAGCTGGAGCTGTG-CGTGTTCTCAGCAACTGTGGTGGCTGTTCTGTTTTGTTTGCATCTTATAAACC-TTtacctgattacattttcctcttcaatttagctgctagaaaacttaaagtcagattggtggctcaccagtaatgagagtttagag---tagaggtaaactctatgacatagtcttaga-ctcttcactttctcctcagccatcatgattcacatttactttattttgctgtactgtgagtgtcttt-gtgtttcctgaattccttctgggataaggcaggttgttagtaTGCACAGGTTTCTGGTCTATCTCATAGCCTCAGGCAGTGGGC---GGTGCTGTCCGTGCTCCCTTTCTGGGTTACCTGTGGTAGCTCCGAAGTTGCAGGGCTGTGATTTGAAGCCTGATTTAGTACACCGTGTTTCTGTCATGTTCTGTGGTGGCTTGCTCCTCACATGTGAGCATTCACCCTGTGGCCCTGTGTTTTTGCACCACACCTCTGTCTGGTGGCATCCTACTGGATGTCTCAGCCGAGCCACTCTGTTCTGAAGATGCCCTTGTCCTCCACCCCTTTGCTTTGGGCTCTGAGCTTCTTCTGCCTTTCATCTCTGTAGGATGAAGCCGCACCCACCCTTCAGGATGccagccttggcaacatt
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120772261 793 + 123690457 CCCTGGGAGATTTCCTCAGCTTGTGCTGGAGGCATGTGGCCCCATGAAGCCCGTAGTCACGGTTCACCCTGAGAGACGCTGGCTTTGGGGCTCACATGCCTGCTGT-GGGCAGCCCCAGGAGATGGCCACCCTGTTTCT-CCTGGAGCTGGagctgcg-cgtcttctcagcaaccgtggtggcttttctgttttatttacatcttataaaccatttacccgattacattttcctcttcaatttagctgctagaaaatttaaagtcaggttggtggctcgccagtaatgagagtt--------tagaggtaaactttatgacatAGTCTTAGA-CTCTTCACTTTCTCCTCAGCCAACATGACTCACAGTTACTTTATTTTGCTGTACTGTGAGTGTCTTT-GTGTTTCCTGAATTCCTTCTGGAATAAGGCAGGTTGTTAGTAAGCACAGGTTTCTGGTCCATCTCGTAGCCTCAGGCAGTGGGC---GGTGCCATC--TGCTCCCTTTCTGGGTTACCTGTGGTAGCTCTCAAGTTGCGGGGCTGCGATTTGAAGCCTGATTTAATACACGGTGTTTCTGTCGTGTTCGGTGGTGGTTTGCTCCTCACGTGTGAGCATTCACCCCGTGGCCC--TGTTTCTCCACCGCACCTCTGCCTGGTGGCCTCCTACTGGATGTCTCAGCCGAGCCACTCTGTTCTGAAGACGCCCTTGTCCTCCACCCCTTTGCTTTGGGCTCTGAGCGTCTTCTGCCTTTCATCTCTGTAGGATGAAGCCCCACCTGCCCTTCAGGATGccagccttggcaacatt
i nomLeu3.chr11            C 0 C 0
s macFas5.chr6             179966131 796 - 181584905 CCCTGGGACATTTCCTCAGCTTGTGCTGGGGGCATGTGGCCCCATGAAGCCCGTAGTCACTGTCCACCCCGAGGGACGCTGGCTTTGGGGCTCACACGCCTGCTGCGGGGCAGCCCCAGGAGATGGCCGCCCTGTTCCTCCCTGGAGCTGGAGCTGCAATGTGTGCTCAGCAGCTGTGGTGGCTGTTCTGTTCTGTTTGCGTCTTATAAACCATTTACCTGATTACATTTTCCTCTTCAATTTAGCTGCTGGAAAATTTAAAGTCTGGTTGGTGGCTCGCCAGTAATGAGAGTTTAGAG---TAGAGGTAAACTTTATGAC--AGTCTTAGACCTCTTCACTTTCTCCTCAGCCAACATGGTTAACATTTACTTTATTTTGCTGTACT----GTGTCTTT-GTGTTTCCTGAGTTCCTTCTGGAATAAGGCGGGTCATTAGTGAGCACAGGTTTCTGGTC-GTCTCACAGCCTCAGGCAGTGGGC---GGTGCTGTCCGTGCTCCCTTTCC-GGTTGCCTGTGGTAGCTCTCAAGTTGCAGGGCTGCGATTTGAAGCCTGATGTAGTGCACCGTGTTTCTGTCGTGTTCTGTGGTGGTTTGCTCCTCACGTGTGAGCATTCACCCTGTGGCCCTGTGTTTTTCCACCACACCTCTGCCTGGTGGCATCCTACTGGATGTCTCAGCCGAGCCACTCTGTTCTG--GATGCCCTTGTCCCCAACCCCTTTGCTCTGGGCTCTGAGCTGCTTCTGCCTTTCATCTCTGTAGGATGAAGCCCCACCCACCCTTCAGGATGccagccttggcaacatc
i macFas5.chr6             C 0 I 293
s papAnu2.chr6                 34889 798 + 174439528 CCCTGGGAGATTTCCTCAGCTTGTGCTGGGGGCATGTGGCCCCATGAAGCCCGTAGTCACTGTCCACCCTGAGGGACGCTGGCTTTGGGGCTCACACGCCTGCTGCGGGGCAGCCCCAGGAGATGGCCGCCCTGTTCCTCCCTGGAGCTGGAGCTGCAATGTGTGCTTAGCAGCTGTGGTGGCTGTTCTGTTCTGTTTGCATCTTATAAACCATTTACCTGATTACATTTTCCTCTTCAATTTAGCTGCTAGAAAATTTAAAGTCCGGTTGGTGGCTCGCCAGTAATGAGAGTTTACAG---TAGAGGTAAACTTTATGACAGAGTCTTAGACCTCTTCACTTTCTCCTCAGCCAACGTGGttaacatttactttattttgctGTACT----GTGTCTTT-GTGTTTCCTGAGTTCCTTCTGGAATAAGGCAGGTCATTAGTAAGCACAGGTTTCTGGTC-GTCTCACAGCCTCAGGCAGTGGGC---GGTGCTGTCCGTGCTCCCTTTCC-GGTTGCCTGTGGTAGCTCTCAAGTTGCAGGGCTGTGATTTGAAGCCTGATGTAGTGCACCGTGTTTCTGTCGTGCTCTGTGGTGGTTTGCTCCTCACATGTGAGCGTTCACCCTGTGGCCCTGTGTTTTTCCACCGCACGTCTGCCTGGTGGCATCCTACTGGATGTCTCAGCCGAGCCACTCTGTTCTG--GATGACCTTGTCCCCAACCCCTTTGCTCTGGGCTCTGAGCTGCTTCTGCCTTTCATCTCTGTAGGATGAAGCCCCACCCGCCCTTCGGGATGCCAGCCTtggcaacatc
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89536036 798 -  91010382 CCCTGGGAGATTTCCTCAGCTTGTGCTGGGGGCATGTGGCCCCATGAAGCCCGTAGTCACTGTCCACCCTGAGGGACGCTGGCTTTGGGGCTCACATGCCTGCTGCGGGGCAGCCCCAGGAGATGGCCGCCCTGTTCCTCCCTGAAGCTGGAGCTGCACTGTGTGCTCAGCAGCTGTGGTGGCTGTTCTGTTCTGTTTGCATCTTATAAGCCATTTACCTGATTACAGTTTCCTCTTCAATTTAGCTGCTAGAAAATTTAAAGTGCGGTTGGTGGCGCGCCAGTAATGAGAGTTTAGAG---TAGAGGTAAACTTTGTGACAGAGTCTTAGACCTCTTCACTTTCTCCTCAGCCAACATGGTTAACATTTACTGTATTTTGCTGTACT----GTGTCTTT-GTGTTTCCTGAGTTCTCTCTGGAATAAGGCAGGTCATTAGTAAGCACAGGTTTCTGGTC-GTCTCACAGCCTCAGGCAGTGGGC---GGTGCTGTCCGTGCTCCCTTTCT-GGTTGCCGGTGGTAGCTCTCAAGTTGCAGGGCTGCGATTTGAAGCCTGATTCAGTGCACCGTGTTTCTGTCGTGTTCTGTGGTGGTTTGCTCCTCACGTGTGAGCAGTCACCCTGTGGCCCTGTGTTTTTCCACCACACCCCTGCCTGGTGGCATCCTACTGGATGTCTCAGCCGAGCCACTCTGTTCTG--GATGCCCTTGTCCCCAACCCCTTTGCTCTGGGCTCTGAGCTGCTTCTGCCTTTCATCTCTGTAGGATGAAGCCGCACCCGCCCTTCAGGATGccagccttggccacatc
i chlSab2.chr4             C 0 C 0
s calJac3.chr2                182062 781 - 204313951 CCTTGGGAGGTTTCCTCAGCTTGTGCTGGGGGCATGTGGCCCCATGAAGCCTGTAGTCACTGTGGACCCTGAGAGATGCTGGCTTTGTGGCTCACGCGCCTGCTGTCGCGCAGCCCCAGGAGATGGCCGCCCTGTTTCTCCCTGGAGCTGGAGCTGCG-TGAGTTCTCAGCAGCTGTGGTAGCTGTTCTG-----TTTGCATCTTATAAACC------CTGATTACATTTTCATCTTCAATTTCGCTGCTAAAACATTTAACGTCAGATATGTGGCTCACCAGTAATGAGAGTTCAGAGTTTTCGAGGTAAACT-TGTGACATGGTCTTAA--CGCTTCACGTTCCCCTTAGGGAACGCAATTAAGAGGTGCTTCATTTTGCTGCACTGTGAAAGTCTTTCATGTTTCCTGAATTCCTTCTGAAATGAGGCCAGCTGCTAGTGAGTACAGGTTTCTGGTCCTTCTCACAGCCTCGGGCAGTGGGCTGTGGTGCTGTCCATGCTCCCCTTCGGTGTTGCCTGTGGTAGCTCTCCAGCTGC-GGGCTGAGATCTGAAGCCTGATTTA---------GTTTCTCTCATGTGCTATGGT-------TTCTCACATGTGAGCATACACCCTGTGGCCCTGTGTTTTCCCACCATACCTCTGCCTGTTGGCATCCTACTGGATGTCTCAGCCCAGACATTTTGTTCCTCAGATTCCGTTGTCCCCCACCCCTTTGCTTTGAGCTCTTAGCTTCCACTGCCTTTCATCTTTGTAGGATGAAGCCCCACCCGCCCTTCAGGATGccagccttggcaacatt
i calJac3.chr2             T 885 C 0

a score=1726767.000000
s hg38.chr3_KI270935v1_alt     10074 820 +    197351 gtgagaccctgtttctacaaaaagtaaac------------gtgtagtggtgcacgcctgtagttccagctacttgggaggctgagatgggaagatcacttgagcctgggaggttgaggctgcattgagctgagatcaa-------gccacggcactccagcctgggagacagagcgaaaccccatctcaaaa-aaacaaagaaaG------TGGATGCGCGCTGCTCCTGCCATTGGATCATCGCAGCATTTTTCTTTTCTCTGATATGCGCCTTTTTCCTCATCGTGGGGGCTCAtgttttcgtacttttctctcgctactagattgtgagctgcgtgaaggaaggTTCATAGTCGTGTTGTATGTACAGGCACACAAAATTTGTGCTTGGATAGACACATATCAATCCGCTTCCTTCTCCTCTCTGAGTTTCTTTATTT-AAAAAAAAAAttagagatggagtctcactgtcttgcccaggctggtctcaaactcctaggctcaagcgatcctcccgcctcTACTAATATGAATTATTAGCCTATACTAATATGAATTCCTATACTAATATGATTGAAATTAGTTTGACTTGTATAATAATTGTTCTCCCAG-ATTGGGCTTCTGTTTTGATAGTAGAACTAAATTATTAGGCTATTTCAAGA----AATTAATATATTACTGGTAGAAAAACTGAAGCTACAAAATGGCCTGGTTTCTCACTTCAGTTAAATTTGTGCTTCTGAGTGCTTGTAT------------------------------------------------------TGTAGGTGAAACCGCACTGAGAAGGTATTTGTGGCCCGTATGCTGATTGATTGATGAGACTTC-TTTGCACAGGAGAGCTGCTAAAAATTATTAC----------------
s panTro4.chr3                634220 821 - 202329955 gtgagaccctgtttctacaaaaactaaac------------gtatagtggtgcacgcctgtagttccagctacttgggaggctgagatgggaagatcacttcagcctgggaggttgaggctgcattgagctgagatcaa-------gccacggcactccagcctgggagacagagcgaaaccccatctcaaaa-aaacaaagaaaG------TGGATGCGCGCTGCTCCTGCCATTGGATCATCGCAGCATTTTTCTTTTCTCTGATGTGCGCCTTTTTCCTCATCGTGGGGGCTCATGTTTTCGTACTTTCCTCTCACTACTAGATTGTGAGCTGCGTGAAGGAAGGTTCATAGTTGTGTTGTATGTACAGGCACACAAAATTTGTCCTTGGATAGACACATATCAATCCGCTTCCTTCTCCTCTCTGAATTTCTTTATTTAAAAAAAAAAAttagagatggagtctcactgtcttgcccaggctggtctcaaactcctaggctcaagcgatcctcccgcctcTACTAATATGAATTATTAGCCTATACTAATATGAATTCCTATACTAATATGATTGAAATTAGTTTGACTTGTATAATAATTGTTCTCCCAG-ATTGGGCTTCTGTTTTGATAGTAGAACTAAATTATTAGGCTATTTCAAGA----AATTAATATATTACTGGTAGAAAAACTGAAGCTACAAAATGGCCTGGTTTCTCACTTCAGTTAAATTTGTGCTTCTGAGTGCTTGCAT------------------------------------------------------TCTAGGTGAAACCGCACTGAGAAGGTATTTGTGGCCCGTATGCTGATTGATTGATGAGACTTC-TTTGCACAGGAGAGCTGCTAAAAATTACTGC----------------
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199663637 817 + 202140232 gtgagaccctgttgctacagaaactaaaca----------agtgtggtggtgcacgcctgtagtcccagctacttgggaggctgagatgggaagatcacttgagcctgagagattgaggctgcattgagctgagatcaa-------gccactgcactccagcctgggagacagagcgaaaccccgtctcaaaa-aaacaaagaaaG------TGGATGTGCGCTGCTCCTGCCATTGGATCATCGCAGCATTTTTCTTTTCTCTGATGTGTGCCTTTTTCCTCGCCGTGGGGGCTCATGTTTTCATAGTTTCCTCTTGCTGCTAGATTATGAGCTGCATGAAGGAAGGTTCATAGTTGTGTTGTCTGTACAGGCACACAAAATTTGTCCTTGGATAGACACATATCAATCCGCTTCCTTCTCCTCTCTGAATTTCTTTATTT-AAAAAAAAAAttagagatggagtctcactgtcttgcccaggctggtctcaaactcctagcctcaagcgatcctcccccctctgcTAATATGAATTATTGGCCTATACTAATATGAATTCCTATACTAATATGATTCAAATTAGTTTGACTTCTATAA----TGTTCTCCCAG-ATT-GGCTTCTGTTTTGATAGTAGAACTAAATTATTAGGCTATTTCAAGA----AATTAATATATTACTGGTAGAAAACCTGAAGCTACAAAATGGCCTGGTTTGTCACTTCAGTTAAATTTGTGGTTGTGAGTGCTTGTAT------------------------------------------------------TCTAGGTGAAACCGCACTGAGATGGTATTTGTGGCTGGTATGCTGATTCATTGATTAGACTTC-TTTGCACAGGAGAGCTGCTAAAAATTACTGC----------------
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120773054 819 + 123690457 gtgagagcctgtttctacaaaaacgaaaca----------agtgtagtggtgcacgcctgcagtcccagctacttgggaggctgagatgggaagatcacttgagcctgggaggttgaggctgcattgagctgagatcaa-------gccactgcactctagcctgggagacagaacgaaaccccatctcaaaa-aaacaaagaaaG------TGGATGTGCGCTGCTCCTGCCATTGGATCATCGCAGCATTTTTCTTTTCTCTGATGTGCGCCTTTTTCCTCACCGTGGGGGCTCATGTTTTCGTAGTTCCCTCTCGCTACTAGATTGTGAGCTGTGTGGAGGAAGGTTCATAATTGTGTTGTATGTACAGACACACAAAATTTGTCCTTGGATAGACACATATCAATCCGCTTCCTTCTCCTCTCTGAATTTCTTTATTT-AAAAAAAAAA--agagatggagtctcattgtcttgcccaggctggtctcaaactcctaggcccaagcgatcctcccgcctcTACTAATATGAATTATTAGCCTGTACT-ATTTGAATTCCTATACTAATGTGATTGAAATTAGTTTGACTTGTATAATAATTGTTCTCCCAG-ATTGGGCTTCTGTTTTGATAGTAGAACTAAATTATTAGGCTATTTCAAGA----AATTAATGTATTATTGGTAGAAAAACTGAAGCTACAAAATGGCCGGGTTTCTCACTTCAGTTAAATTTGTGCTTCTGAGTGCTTGTAT------------------------------------------------------TCTAGGTGAAACCGCACTGAGAAGGTATTTGTGGCCCGTTCGCTGATTCATTGATTAGACTTC-TTTGCACAGGAGAGCTGCTAAAAATTACTGT----------------
i nomLeu3.chr11            C 0 C 0
s macFas5.chr6             179967220 815 - 181584905 gtgagaccctgtttctacaaaaagtcaacaaaatgaacccagtgtggtggtgcacgcctgtagtcccagctacttgggaggctgagatgggaagatcacttgagcctgggaggttgaggctgcattgagctgagatcaa-------gccacagcactccagcctgggagacagagcgaaaccctatctcaaaa-aaacaaagaaaG------TGGATGCGTGCTGCTCCTGCCATTGGGTCATCGCAGCATTTTTCTTTTCTCTGATGCGCACCTTTTTCCTCATCGTGGGGTCTCAtgttttcatagttccctctcactactggattgtgagctgcgtgaaggaaggTTCATAGTTGTGTTGTATGTACAGGCACACAAAATTTGTCTTTGGACAGACACATATCAATCCACTTCCTTCTCCTCTCTGAATTTCTTTATAT-GAAAAAATAAttagagatggagtctcactgtctttcccaggctggtctcaaactcctaggctcaagtgatcgtccc------gcc-----------tcagcctATACTAATATGAATTCCTCTACTAATGTGATTGAAATTAGTGTGACTTCTATAAAAATTTTTCTCCCAG-ATTGGGCTTCTGTTTTGATAGTAGAAGTAAATTGTTAGGCTATTTCAAGA----AATTAATATATTACTGGTAGAAAAACTGAAGCTACAAAATGGCCTGGTTTCTCACCTCAGTTAAATTTGTGCTTCTGAGTGTTTGTAT------------------------------------------------------TGTAGGTGAAACTGCACTGAGAAGGTATTTGTGGCCCGTACACTGATTCCTTGATGAGACTTG-TTTGCACAGGAGAGTTGCTAAAAATTACTGC----------------
i macFas5.chr6             I 293 I 16
s papAnu2.chr6                 35687 822 + 174439528 gtgagaccctgtttctacaaaaagtcaacaaaatgaacccagtgtggtggtgcacgcctgtagtcccagctacttgggaggctgagatgggaagatcacttgagcccgggaggttgaggctgcattgagctgagatcaa-------gccacagcactccagcctgggagacagagcgaaaccttatctcaaaa-aaacaaagaaag------tggaTGCGTGCTGCTCCTGCCATTGGGTCAtcgcagcattttttttttctctgatgcgCACCTTTTGCCTCATCGTGGGGTCTCATGTTTTCGTAGTTCCCTCTCACTACTAGATTGTGAGCTGCGTGAAGGAAGGTTCATAGTTGTGTTGTATGTACAGGCACACAAAATTTGTCTTTGGACAGACACATATCAATCcgcttccttctcctctctgaatttctttatat-aaaaaaataattagagatggagtctcactgtctttcccaggctggtctcaaactcctaggctcacgCGAtcgtcccgcctcagcc-----------tcagcctaTACTAATATGAATTCCTATACTAATGTGATTGAAGTTAGTGTGACTTCTATAATAATTGTTCTCCCAG-ATTGGGCTTCTGTTTTGATAGTAGAAGTAAATTATTAGGCTATTTCAAGA----AATTAATATATTACTGGTAGAAAAACTGAAGCTACAAAATAGCCTGGTTTCTCACCTCAGTTAAATTTGTGCTTCTGAGTGTTTGTAT------------------------------------------------------TGTAGGTGAAACTGCACTGAGAAGGTATTTGTGGCCCGTACACTGATTCCTTGATGAGACTTGTTTTGCACAGGAGAGCTGCTAAAAATTACTGC----------------
i papAnu2.chr6             C 0 I 16
s chlSab2.chr4              89536834 820 -  91010382 gtgagaccctgtttctacaaaaagccaacaaaaggaacccagtgtggtggtgcacgcctgtagtcccagcttcctgggaggctgagatgggaagatcacttgagcctgggaggttgaggctgcattgagctgagatcaa-------gccactgcactccagcctgggagacagagcaaaaccctatctcaaaa-aaacaaagaaaG------TGGATGTGTGCTGCCCCTGCCACTGGGTCATCGCAGCATTTTTCTTTTCTCTGATGCGCACCTTTTTCCTCATCGTGGGGTCTCATGTTTTCGTAGTTCCCTCTCACTACTGGATTGTGAGCTGCGTGAAGGAAGGTTCATAGTTGTGTTGTATGTACAGGCACACACAATTTGTCTTTGGACAGACACATATCAATCCGCTTCCTTCTCCTCTCTGAATTTCTTTATAT-AAAAAAA-AAttagagatggagtctcactgtctttcccaggctggtctcaaactcctaggctcaagcgatcgtcccgcctcagcc-----------tcAGCCTATACTAATATGAATTCCTCTACTAATGTGATTGAAATTAGTGTGACTTCTATAAAAATTGTTCTCCCAG-ATTGGGCTTCTGTTTTGATAGTAGAAGTAAATTATTAGGCTATTTCACGA----AATTAATATATTACTGGTAGAAAAACTGAAGCTACAGAATGGCCGGGTTTCTCACTTCAGTTAAATTTGTGCTTCTGAGTGTTTGTAT------------------------------------------------------TGTAGGTGAAACTGCACTGAGAAGGTATTTGGGGCCCGTACACTTATTCCTTGATGAGACTTG-TTTGCACAGGAGAGCTGCTAAAAATTACTGC----------------
i chlSab2.chr4             C 0 I 6291
s calJac3.chr2                182843 868 - 204313951 gtaagaccttgtttctacaaaaagtaaacaatattagccaagtgtggtggtacatgcctatagtcctagctactcaggaggctgagataggaagatcacttgagcctgggaggtggaggctgcgctgagctgagatcagctgagcccccgccgtactccagcctgggagacagagcgaaaccatggctcaGGGTGTACAGTGACAGGCTTCATGAACACATGCTGCTCCTGCCGTGGGATCAT--CAGCGTTGTTCTTGTCTCCGACGTGC-----------------------------CTTCGTAGTT-CCTCTCGATGCTAGATTGTGAGCTGGGTGAGGGAAGGGTCGTAGT-GTGTTGTACATACAGGCACAC--AATTTGGCCTTGGATACAGACATACCAGTTCGCTTCCTT---CTCTCTGAAtttctttattt-aaaaa---atttagagatggaatctcactgccttgcccgggctggtcccaaactcctaggctcaagcgatcctcccgcctcagcc-----------tcAGTGTATACATATATGAATTCCTATGTGAATATGATTGAAATTAGTTTGACTTCTATAATAATTGTTCTCCCAGAATTGGGCTTCTG-TTTGATAGTAGAACTAAATCATTAGGCTATATCAAGAAATTAATTAATATAATACCAGCAGAAAAACTGAAGCTGCAAAATGGCCTGGTTTCTCATTTCAGGTAAATTTGTGCTTCTGAGTGCTCGTGTTAAAATCTAGGTGAATATACCTGAATTGAACCTTAGACTGAAGGTAAAAAAAAATCTAGGTGAAGCCGCACTGAGAAGGTATTTGTGGCTTATACACTGGTTCCTTCACAAGACTTG-TTTGCACAGGAGAGCTGCTAAAAATTACTGCTCTCAGGGAGGTCTAC
i calJac3.chr2             C 0 C 0

a score=578108.000000
s hg38.chr3_KI270935v1_alt     10894 284 +    197351 GGTGAACAGGTATGAAG-AAGA---CTGTTCTCTGCCCTTCTTTTTGCAATAAAATGTTACAAAC-TATCTTGAGATTGATCCCTTTTCGGGTGTTTGGG--------TTTTTTTT----AACATTCACATATTTCTTGGAATTATAAGAAATTAACTT-----------TGTGCTTCTGAAGTGGGTTTCCCTTAATAT------AACACTGATGTATTTGTAAGGGGCATTTTTAAAGTTGTACTTTAAAAAATAATAATTCTTACATTCGTTTGAAGGttttttgtttgtttgtttgtttgtttttgagatgaag
s panTro4.chr3                635041 280 - 202329955 AGTGAACAGGTATGAAG-AAGA---CTGTTCTCTGCCCTTCTTTTTGCAATAAAATATTACAAAC-TATCTTGAGATTGATCCCTTTTCGGGTGTTTGGG--------TTTTTTTT----AACATTCACATATTTCTTGGAATTATAAGAAATTAACTT-----------TGTGCTTCTGAAGTGGGTTTCCCTTAATAT------AACACTGTTGTATTTGTAAGGGGCATTTTTAAAGTTGTACTTTAAAAAATAATAATTCTTACATTCGTTTGAAGGTTT----Tttgtttgtttgtttgtttttgagatgaag
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199664454 279 + 202140232 GGTGAACAGGTATGAAG-AAGAAGGCTGTTCTCTGTCCTTCTTTTTGCAATAAAATGTTACAAAG-TATCTTGAGTTTGATCCCTTTTTGGGTGTTTGGA--------TTTTTTTT----AACATTCACATATTTCTTGGAATTATAAGAAATTAACTT-----------TGTGCTTCTGAAGCGGGTTTGCCTTAATAT------AACACTGATGTATTTGTAAGGGGCATTTTTAAAGCTGTACTTTAAAAAATAATAATTCTTACATTTGTTTGAAGGttt--------tttgtttgtttgtttttgaaatggag
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120773873 284 + 123690457 GGTGAACAGGTATGAAG-AAGAAGGCTGTTCTCTGCCCTTCTTTTTGCAGTAAAATGTTACAAAC-TATCTTGAGTTTGATCCCTTTTCGGGTGTTTGGG--------TTTTTTTTTTTAAACATTCACATGTTTCTTGGAATTATAAGAAATTAACTT-----------TGTGCTTCTGAAGTGGGTTTGCCTTAATAT------AACACTGATGTATTTGTAAGGGGCATTTTTAAAGCTGTACTTTAAAA---AATAATTCTTACATTCGTTTGAAGGttg----tttgtttgtttgtttgtttttgagatggag
i nomLeu3.chr11            C 0 C 0
s macFas5.chr6             179968051 284 - 181584905 GGTAAACAGGTATGAAG-AAGAAAACTGTTCTCTGCCCTTCTTTTTGCAATAAAATGTTACAAAC-TATCTTGAGTTCGATCCC-TTTCGGGTGTTTGGGtttttttttttttttttttAAACATTCACATATTTCTTGGAATCATAAGAAATTAACTT-----------TGTGCTTCTGAAGTAGGTTTGCCTTAATAT------AACACTGATGTATTTGTAAGGGGCATTTTTAAAGCTGTACTTTAAAAAATAA----TCTTACATTCTTTTGAAGGTTT---------TT-TTTGTTTGTTTTTGAGACGGAG
i macFas5.chr6             I 16 N 0
s papAnu2.chr6                 36525 282 + 174439528 GGTAAACAGGTATGAAG-AAGAAAACTGTTCTCTGCTCTTCTTTTTGCAATAAAATGTTACAAAC-TATCTTGAGTTCGATCCC-TTTCGGgtgtttggg------tatttttttttttaaacattcacaTATTTCTTGTAATCATAAGAAATTAACTT-----------TGTGCTTCTGAAGTAGGTTTGCCTTAATAT------AACACTGATGTATTTGTAAGGGGCATTTTTAAagctgtactttaaaaaataataattcttacattctcttgaaggttt---------tt-tttgtttgtttttgagacggag
i papAnu2.chr6             I 16 C 0
s chlSab2.chr4              89543945 284 -  91010382 GGT-AACAGGTATGAAG-AAGAAAACTGTTCTCTGCCCTTCTTTTTGCAATAAAATGTTACAAAC-TATCTTGAGTTCGATCCCTTTTCAGGTGTTTGGG-----TTTTTTTTTTTTTTAAACATTCACATATTTCTTGGAATCATAAGAAATTAACTT-----------TGTGCTTCTGAAGTAGGTTTGCCTTAATAT------AACACTGATGTATTTGTAAGGGGCATTTTTAAAGCTGTACTTTAAAAAATAATAATTCTTACATTCTTTTGAAGGttt---------ttgtttgtttgtttttgagacggag
i chlSab2.chr4             I 6291 C 0
s calJac3.chr2                183711 299 - 204313951 GGTTAACAGGTATGAAGAAAGAAGACTGTTCTCTGCACTTCTTTTTACGATAACATGTTACAGACTTATCTTGAGTTTGATCCCTTTTTGGATGTTTGGG---TTTTGTGTTTTTTTTTTAACATTTACATATTTCTTGGAATTATAAGAAATTAACTTTTTTTCAAGTCTGTGCTTCTGAAGAAGGTTTGCCTTAATATAACTACAACATTGATATATTTTTAAGGGGCATTTTTGAAACTGTACTTTTAAA---AATAATTCTTACATTCTTTTGAAGttct-------------ttttttttttttgagacagag
i calJac3.chr2             C 0 C 0

a score=56489.000000
s hg38.chr3_KI270935v1_alt     11178 44 +    197351 gcttgccctgtcacccaggctggagtgcagtggcattgatcttg
s panTro4.chr3                635321 44 - 202329955 gcttgccctgtcacccaggctggagtgcaatgTTATTGATCTTG
i panTro4.chr3             C 0 M 247
s ponAbe2.chr3             199664733 44 + 202140232 gctcactctgtcacccaggctggagtgcagtggcattgatcttg
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120774157 44 + 123690457 gctctctctgtcaccgaggctggagtgcaatggcattgatcttg
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr6                 36807 42 + 174439528 gcttgctgtctcgcccaggctgga-tgcagtggtg-cgatcttg
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89544229 43 -  91010382 gctcgctttgtcgcccaggctggagtgcagtggcg-cgatcttg
i chlSab2.chr4             C 0 C 0
s calJac3.chr2                184010 43 - 204313951 tctcactctgttgtccaggctggagtgcaatggtg-tgatctca
i calJac3.chr2             C 0 C 0

a score=74140.000000
s hg38.chr3_KI270935v1_alt     11222 68 +    197351 gctcactgcaacctctgcatctggagttcaagcaattctcctgcctcagcctcctgagtagctgggac
s ponAbe2.chr3             199664777 68 + 202140232 gctcactgcaacctctgcatctggagttcaagcgattctcctgcctcagcctccagagtagctgggac
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120774201 68 + 123690457 gctcactgcaacctctgcatctggagttcaagcgattctcctgcctcagcctcctgagtagctgggac
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr6                 36849 68 + 174439528 gctcactgcaacctccgtgtccggggttcaagcgattctcctgcctcagcctcctgagtagctgggat
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89544272 68 -  91010382 gctcactgcaacctccacgtccggggttcaagccattctcctgcctcagccccctgagtagctgggac
i chlSab2.chr4             C 0 C 0
s calJac3.chr2                184053 59 - 204313951 gctcactgcaacctctgtctccctggttcacgtgattctcctgcct---------gagttgttgggat
i calJac3.chr2             C 0 C 0
e panTro4.chr3                635365 247 - 202329955 M

a score=227646.000000
s hg38.chr3_KI270935v1_alt     11290 148 +    197351 tacaggcacctgccaccacgcccagctaattttttgtatttttaatagagatggggtttcaccgtgttagccaggatggtctcaatctcctgacctcatgatccacccacctcggcctcccaaagtgctgggattacaggcgtgagcc
s panTro4.chr3                635612 148 - 202329955 tacaggcacctgccaccacgcccagctaattttttatatttttagtagagacggggtttcaccgtgttagccaggatggtctcaatctcctgacctggtgatccacccacctcggcctccccacgtgctgggattacaggcgtgagcc
i panTro4.chr3             M 247 C 0
s ponAbe2.chr3             199664845 148 + 202140232 gacagacacctgccaccatgcccagctaattttttgtatttttagtagagacagggtttcaccgtgtttgccaggatggtctcaaagtcctgacatcgtgatccgcccacctcggcctcccaaagtgctgggattagaggcatgagcc
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120774269 148 + 123690457 tacaggcacctgccaccatgcacagcaaattttttgtatttttagtggagacggggtttcactgtgttagccaggatggtctcgatctcctgacctcatgatctgcccgtgtcagcctcccaaagtgctgggattacaggtgtgagcc
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr6                 36917 148 + 174439528 cacaggcgcctgccactatgcccggctaaatttttgtatttttagtagagatggggtttcactgtgttagctaggatggtctcgatctcctgacctcattgtctgcctgcctcggtctcccaaagtgctgggattacaggcgtgagcc
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89544340 148 -  91010382 tacaggtgcccgccaccacgcccagctaattttttgtatttttagtagagatggggtttcaccgtgttagccaggatggtctcaatctcctgaccttgtgatctgcgcacttcagcctcccaaagtgataggattacaggcgtgagcc
i chlSab2.chr4             C 0 C 0
s calJac3.chr2                184112 147 - 204313951 tataggcgtccgccactatgcccgcccaa-tttttgtatttttagtagagctgggatttcaccatgttgatcaggcttgtcttgaactcctgacctcgtgatccatccgcctcggcgtcccaaagtgctgggattacaggtgtgagcc
i calJac3.chr2             C 0 T 47777

a score=3950.000000
s hg38.chr3_KI270935v1_alt     11438 3 +    197351 -GGG
s panTro4.chr3                635760 4 - 202329955 aGGG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199664993 4 + 202140232 aGGA
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120774417 4 + 123690457 aAGG
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr6                 37065 4 + 174439528 aggg
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89544488 4 -  91010382 aGGG
i chlSab2.chr4             C 0 C 0
e calJac3.chr2                184259 47777 - 204313951 T

a score=2165656.000000
s hg38.chr3_KI270935v1_alt     11441 1435 +    197351 ggccaacatggtgaaactctatctctactaaaaatac-aaaattagccgggaatggtggtgtgcgcctgtaatcccagctactcgggaggctgaggcatgagaatcacttgaacctgggaggcagaggttgcagtgagctgagatagcgccactacagtccagcctgggggacag--tgagactccatctcaaaaaaaaaaaacaaaaaaa--gaatagaaTAACTCTTGtttaggtgttacaaaatccaggccagaccaatctaaactttaatctcatacccagttcctagatgagtcccttctccagctcaggttcggcctaagcctcagggttccttg-cttggtgggcaccacctgctc---------ccttccccgcctttgttcctc-------tttttcctctgctggctcctccggggttgggtgtgTTCAGAGGCAGAGACAGGCTAAAGGTCTTTGGCTTTTAGGTTCTGTTGATGGGTGAGTTCCAGATA-TAGCTTTCTCTTGTAGGATATTTCatttatttatctattaaaaatatttatttagaacacaccattcatgtgccagaccctgttccaggaac-tggggagagggtgataaatgagatcaacaaaaatacctgcccacattaagctcctgttctagggaagacaaaaaagaaagaaaatacacgtgtccttagtacattagaaggttccaagtactgtagagaaaaataaagtaggttggactcggtggctcatgcctgtaatcccagcactttgcgaggctgaggtgggaggattacttgagctcaggaatttgagaccagcctgggc--aacatggcaaatcc-tgtctctaccaaaataaaaaaaaaaaaa-------------------------ttagctggatatggtggcgtgcacctgtagtcccagccactggggaggctgaggagggagaattgcttcagcccaggaggtgaaggttgcagtaagctgagatcgtgccattgcactccagcctgagtgacag--agccaaaccctgtctcaaaaacaaggaaa-----------gaaagaaaatgaaaaaaagaaagcagagatgggg-caagcagggg-agagggCT---------------GGTGCTGGGGTCACAGCGGAGGGGCTGGGGATGCACGGGAGGGGCTGGGGATGTGAGCTTTCCTGAGTTCCCACAG---TTCTCTGCCCCTCTCCTGTCTCATGGCACAAGGGCCTCCTGGGGCTTGCGGTGGTTTTGCGCCAAGCTAATATCTTGTTCTTCCCAACAGACGGAGGCCCATTGAGGCTTCTGTGTCCTCCACGGGGACCAGCATTGGGCTAAACCTGCAGAC-ACCATTGCAAAGGGAA-----TTCAGGCAAACCCGCTGGTGAAAAATGATTCCAGCGTGGGG--ACAGAGGCTGACATTTCTCG-CGTGGGTGATTTAATGTTGGGCCTCAATTTTTCACTCCCCCCGTAAGAGTATGACATAGC-CACAACC
s panTro4.chr3                635764 1440 - 202329955 ggccaacatggtgaaaccctatctctactaaaaatac-aaaattagctgggaatggtgatgtgcgcctgtaatcccagctactcgggaggctgaggcatgagaatcacttgaacctgggaggcagaggttgcagtgagctgagatagcgccactgcactccagcctgggggacag--tgagactccttctcaaaaaaaaaaaaaaaaaaaaaagaatagaaTAACTCTTGTTTAGGTGTTACAAAATCCAGGCCAGACAAATCTAAACTTTAATCTCACACCCAGTTCCTAGATTAGTCCCTTCTGCAGCTCAGGTTCGGCCTAAGCCTCAGGGTTCCTTA-CTTGGTGGGCACCACCTGCTC---------CCTTCCCCACCTTTGTTCCTC-------TTTTTCCTCTGCTGGCCCCTCCGGGGTTGGGTGTGTTCAGAGGCAGAGACAGGCTAAAGGTCTTTGGCTTTTAGGTTCTGTTGATGGGTGAGTTCCAGATACTAGCTTTCTCTTGTAGGATATTTCatttatttatctgttaaaaatatttatttagaacacaccattcatgtgccagaccctgttccaggcac-tggggatagggtgataaatgagatcaacaaaaatacctgcccacattaagctcctgttctagggaagacaaaaaagaaagaaaatacacgtgtccttagtacattagaagattccaagtactgcagagaaaaataaagtaggctggactcagtggctcacgcctataatcccagcactttgggaggctgaggtgggaggattacttgagctcaggaatttgagaccagcctgggc--aacatggcaaatcc-tgtctctacaaaaaaaaaaaaaaaaaaa------------------------attagctgggtatggtggcatgcacctgtagtcccagccactggggaggctgaggagggagaattgcttcagcccaggaggtgaaggttgcagtaagctgagatcgtgccattgcactccagcctgagtgacag--agccagactctgtctcaaaaaaaaggaaa-----------ggaagaaaatgaaaaaaagaaagcagagatgggg-caagcagggggagagggCT---------------GGTGCTGGGGTCACAGCAGAGGGGCTGGGGATGCACGGGAGGGGCTGGGGATGTGAGCTTTCCTGAGTTCCCACAG---TTCTCTGCCCCTCTCCTGTCTCATGGCACAAGGGCCCCCTGGGTCTTGCGGTGGTTTTGCGCCAAGCTAATATCTTGTTCTTTCCAACAGACGGAGGCCCATTGAGGCTTCTCTGTCCTCCACGGGGACCGGCATTGGGCTAAACCTGCAGAC-ACCATTGCAAAGGGAA-----TTCAGGCAAACCCGCTGGTGAAGAATGATTCCAGCTTGGGG--ACAGAGGCTGACATTTCTTG-CGTGGGTGATTTAATGTTGGGCCTCAATTTTTCATTCCCCCCGTAAGAGTATGACATAGC-CACAACC
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199664997 1422 + 202140232 ggccaacatggtgaaaccctatctctactaaaaatac-aaaattaaccgggaatggtggtgtgtgcctgtaatcccagctacttgggaggctgaggcatgagaatcacttcaacctggaaggcagaggttgcagtgagctgagatagcgccactgcactccagcctgggggtcag--tgagactccatctcaaaaaaaaaaaaaaaaagaa----------taaGTCTTGTTTAGCTGTTACAAAATCCAGGCCAGACAAATCTAAACTTTAATCTCACACCCAGTTCCTAGATTAGTCCCTTCTCCAGCTCAGGTTCGGCCTAAGCCTCAGGGTTCCTTA-CTTGGTGGGCACCACCCGCTC---------ACTTCCCCACCTTTGTTCCTG-------TTTTTCCTCTGCTGGCTCCTCCGGGGTTGGGTGTGTTCAGAGGCGGAGACAGGCTAAAGGTCTTTGGCTGTTAGGTTCTGTTGATGGGTGAGTTCCAGATACTAGCTTTCTCTTGTAGGATATTTCatttatttatctattaaaaatatttatttagaacacaccattcatgtgccagaccctgttccaggcac-tggggatagggtgataaatgagatcaacaaaaatacctgtccacattaagctcctgttttagcgaagacaaaaaagaaagaaaatacacgtgtccttagtacattagaaggttccaagtactgtagagaaaaataaagtaggttggactcggtggctcacgcctgtaatcccagcactttggaaggctgaggtgggaggattacttgagctcagaaatatgagaccagcctgggc--aacatggcaaatcc-tgtctctaccaaaaaaaaaaaaaaaa---------------------------ttagctgggtatggtggcatgcacctatagtcccagccactggggaggctgaggagggagaattgcttcagcccaggtggtgaaggttgcagtaagccgagatcgtgccattgcactccagccagggtgacag--agccagaccctgtctcaaaaaaaacga---------------aagaacatgaaaaaaagaaagcagagatgggg-caagcaggag-agagggCT---------------GGTGCTGGGGTCACAGGGGAGGGGCTGGGGATGCACGGGAGGGGCTGGGGATGCAAGCTTTCCTGAGTTCCCACAG---TTCTCTGCCCCTCTCCTGTCTCATGGTGCAAGGGCCCCCTGGGGCTTGCGGTGGTTTTGCACCAACCTAATATCTTGTTTTTCCCAACAGACGGAGGCCCATGGAGGCTTCTCTGTCCTCCACGGGGAACAGCACTGGCCTAAACCTGCAGAC-ACCATTGCAAAGGGAA-----TTCAGGCAAACCCGCTGGTGAAGAATGATTCCAGCGTGGGG--ACAGAGGCTGACATTTCTTG-CGTGGGTGATTTAATGTTGGGCCTCAATTTTTCACTCCCGCCGTAAGAGTATGACATAGC-CACAACC
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120774421 1402 + 123690457 ggccaacagggtgaaactctatctctactaaaaatac-aaaattagccaggaatggtggtgtgcgcctgtaatcccagctactcgggaggctgaggcatgagaatcacttgatcccgggaggcagaggttgcagtgagctgagatagcgccactgcactcctgcctgggggacag--tgaggttccatctcaaaaaaaaTATAGAA---------------TAACTTTTGtttaggtgttacaaaatccaggccagacaaatctaaactttaatctcacacccagttcctagattagtcccttctccagctcaggttcggcctaagcctcagggttcctca-cttggtgggcaccacctgctc---------ccttccccacctttgttcctc-------tttttcctctgctggctcctccggggttgggtgtgttcagtggcggaaacaggctaaaggtctttggcttttaggttctgttgATGGGTGAGTTCCAGATACTAGCTTTCTCTTGTAGGGTATttcatttattcctc----aaaaata-----ttagaacacaccattcatgtgccagaccctgttccaggcac-tggggctagggtgataaatgagatcaacaaaaatacctgcccacattaatctcctgttctagggaagaccaaaaagaaagaaaatacacgtgtccttagtacattagaagtttgcaagtagtgtagagaaaaataaagtaggttggactcggtggctcacacctgtaatcccagcactttgggaggctgaggtgggaggattacttgagctcaggaatttg-------------------------------tgtctctacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaattagctgggtatggtggcatgcacctgtagtcccagccactggggaggctgaggagggagaattgcttcagccctggaggtgaaggttgcagtaagccgagatcgtgccattgcactccagcctgggtgacag--agccagaccctgtctcaaaaaaaaaaaaaaaaaccaaaaggaaagaaagatgaaaaaacaaagcagagatgggg--aagCAGAGG-AGAGGGCT---------------GGTGCTGGGGTCACAG--------------------GGGAGGGGCTGGGGATGCAAGCTTTCCTGAGTTCCCACAG---TTCTCTGCCCCTCTCCTGTCTCACAGGGCAAGGGCCACCTGGGGCTTGCGGTGGTTTTACACCAAGCTAATATCTTGTTCTTCCCAACAGACGGAGGCCCATTGAGGCTTCTCTGTCCTCCATGAGGAATAGCATTGGCCTAAACCTGCAGAC-AGCATTGCAAAGAGAA-----GTCAGGCAAACCCGCTGATGAAGAATGATTCCAGTGTGCTG--ACGGAGGCTGACATTTCTTGCCATGGGTGATTTAATGTTGGGCCTCAATTTTTCACTCCCCCCGTAAGAGTATGACATAGC-CACAACC
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr6                 37069 1441 + 174439528 ggccaatgtagtgaaacctcatctctactaaaaatac-aaaattagtcgggaatggtggtgtgcgcctgtaatcccagctacccgggaggctgaggcatgagaatcagttggacccgggaggcagaggttgcagtgagctgagatcacgccactgcactccagccttggggacag--tgagactccatct----caaaaaaaaaaaaatga--taatggaaTAACCCTTGTTTAGGTGTTACAAAATCCAGGCCAGACAAATCTAAAC-TTAATCTCACACCCAGTTCCTAGATTAGTCTCTTCTCCAGCTCAGGTTTGGCCTAAGCCTCAGGGGTCCTTA-CTTGGTGGGCGCCACCTGCTCCcttccccaccttccccaccTTTGTTCCTG-------TTTTTCCTCTGCTGGCTCCTCCTGGGTTGGGTGTGTTCAGAGGCGGCGACAGGCTAAAGGTCTTTGGCTTTTAGGTTCTGTTGATGGGTGAGTTCCGAATACTAGCTTTCTCTTGTAGGATATTTCATTTagttatctattaaaaatatttatttggaacaCACCAttcatgtgccagacactgttccaggcac-tggggatagGGTAATAAATGAGATCAACAGAAACACCTGCCCACGTTAAGCTCCCGTTCTAGGGAAGacgaaaaagagagaaaatacatgtgtCCTTAGTACGTTAGAAGGTTCCAAGtactgtaaagaaaaataaagcaggctggactcggcggctcatgcctgtaatcccggcactttgggagac--aggtgggaggattacttgagctcaggaatttgagaccagcctgggt--aacatggcaaatcT-TGtctttaccaaaag-aaaaaaaaaa---------------------------ttagctgggtggg-------------gtagtcccagccactggggaggctgaggagggagaattgcttcagccctggaggtgaaggttgcagtaagccgagatcgtgccattgcactccagcctgggtgacaa--agccagaccctgtctc--aaaaaaaaa-------------taaagaaaatgaaaaaaagaaagcagagatgggg-caagcagggg-agagggctggggacgcaggggagggtgctggggatgcaggggaggggttgggaacacgggggagaggctggggaCGCAAGCTTTCCTGAGTTCCCACAG---TTCTCTGCCCCTCTCCTGTCACACAAGGCGTGGGCCCCCTGGGGCTTGTGATGGTTTTGTGCCAAGCTAATATCTTGTTCTTCCCAACAGACAGAGGCCCACTGAGGCTTCTCTCTCCTCCACGGGTAACAAGATTGGCCTAAACCTGCAGAC-ACCATTGCAAAGGGAAGTCAGCTCAGGCGAACCCGCTGGTGAAGAATGATTCCaatgtggggacacagaggccgACATTTCTTGCCATGGGTGATTTAATGTTGGGCCTCAATTTTTCACTCTC-CTGTAAGAGTATGACACAGCTCGCAGCT
i papAnu2.chr6             C 0 I 1005
s chlSab2.chr4              89544492 1445 -  91010382 ggccaacatggtgaaaccccatctctactaaaaatac-aaaattagctgggaatggtggtgtgcacctgtaat-ccagccactcgggaggctgaggcatgagaatcagttggacccgggaggcagaggttgcagtgagctgagatcacgccactgcactccagccttggggacag--tgagactccatctcaaacaaaaaaaaagaaaTGA--TAATGGAATAACCCTTGtttaggtgttacaaaatccaggccagacaaatctaaac-ttaatctcacacccagttcctagattagtcctttctccagctcaggtttggcctaagcctcaggggtcctta-cttggtgggcgccacctgctc---------ccttccccacctttgttcctg-------tttttcttctgctggctcctcccgggttgggtgtgttcagaggcggagacaggctaaaggtctttggcttttaggttctgttgATGGGTGAGTTCCAAATACTAGCTTTCTCTTGTAGGATATTTCATTTAGttatctatttaaaatatttatttagaacacaccattcatgtgccagacactgttccaggtgcttagggatagggtgatagatgagatcaacaaaaatacctgcccacgttaagctcctgttctagggaagacaaaaa----ataaaatacacgtgtccttagtacattagaaggttccaagtactgtaaagaaaaataaagcaggctggactcagtggctcatgcctgtaatcccggcactttgggagac--aggtgggaggattacttgagctcaggaatttgagaccagcctgggt--aacatggcaaatcc-tgtctctaccaaaagaaaaaaaaaaa---------------------------ttagctgggtgtggtggcg-gcatctgtagtcccagccactggggaggctgaggagggagaattgcttcagcccgggaggtgaaggttgcagtaagccgagatcgtgccattgcactccagcctgggtgatag--agccagaccctgtctcagaaaaaaaaa-------------gaaagaaaatgaaaaaaagaaagcagagatgggg-caagcagggg-agagggCTGGGGACACAGGGGAGGGTGCTGGGGACACAGGGGAGGGGTTGAGAACACGGGGGAGAGGCTGGGGACGCAAGCTTGCCTGAGTTCCCACAG---TTCTCTGCCCCTCTCCTGTCACACAAGGCGT--GCCCCCTGGGGCTTGTGGTGGTTTTGCGCCAAGCTAATATCTTGTTCTTCCCAACAGACAGAGGCCCACTGAGGCTTCTCTCTCCTCCACAGGGAACAGCATTGGCCTAAACCTGCAGAC-ACCATTGCAAAGGGAAGTCAGCTCAGGCGAACCCGCTGGTGAAGAATGATTCCAATGTGGGGACACAGAGGCCGACATTTCTTGCCATGGGTGATTTAATGTTGGCCCTCAATTTTTCACTCTC-CTGTAAGAGTATGACACAGCTCACAGCT
i chlSab2.chr4             C 0 I 6
s calJac3.chr5              41951593 1360 + 159171411 gaccaacatggtgaaaccccgtctctaatgaaaatacaaaaatgagctgggcatggtgacaagcgcctataac-ctagctactcaggaggctgaggcaggagaattacctgaacctgaaaggtggaggttgcagtgagctgagattgtgccattgtactccagcctgggccacagaccaagactctgtctcaaaaaaaacaaaaacaaaaa-taaaTGGAATAACTGATGTTTAGGTGTTACAAAATCCAGGCCAGACAAATCTAAACTTTAATCTCACACCCAGTTCCTAGATGAGTCTCTTCTCCAGCTCCAGTTCAGCCTAAGCCTTGGGGGTCCTTAGCTGGGCGGGCACCACCTGTTC---------CCTTCCCCACCTTTGTTCCTGTTTTTTTTTTTTCCTCTGCTGGCTCCTCTGGGGTTGGCTGCGTTCAGAGGTAGGGACAGGCTAAAGGTCTCTGGCTTTTTGGTTCTGTTGATGGGTGAGCTCCCAATACTAGCTTTCTCTTGTAGGATATTTCatttatttatttgttaaaaatatttacttagaacacatcattcacatgccagccactgttctaggcac-tggggatagggtgataaatgagataaacaaaaatacctgctcatgtaaagctcctattctagggaagacaaaaaag--agaaaatacatgtgtacttagtacattagaaggttccaagtactgtaaagaaaaataaagcaggccagactcagtgactcacatctgtaatcccagcactttgagag--------------------------------ttcgagaccagcctggtttggtcacgacaaaaccaggtctctac--------aaaaaaaaa---------------------------ttagttgggtgtgggggcatgcacctgtggtcccagccactggggaggcttaggtgggaggattgcttgagcctgggaggcggagatggcagtaagccaagattgtaccattgcactccagcctgggtgacagccagacagaccctgtctggaaaaaaaaaa---------------------------aaaaaaaagcagagatgggggtaagtgggga-ag-----t-------------------------------------------------------ggggctggggatgCAAGCGTCCCTGAGCTCCCATGGTTCTTCTCTGCCCCTCTCCTGTCTCATGGGGCACAGGTCCCCTGGGGCTTGTGGTTGTTTTACGCCAATCTAATATCCTTTTCTTCCCAACAGTTGGAGGCCAACTGAGGCTTCTTTGTCCTCCACGGGGAACAGCACTGGCCTAATCCTGCGGACAACCATTGCAAAGGGCAGTCAGCTCCAGTAAACCTGCTGATGAAGAATGATCCCAGAGTGGGGACACAGAGGCTGACATTTCTTGCTGTAGGTGATTTAATGATGGGCCTCAATATTTCACTCCTCTTGTAAGAGTATGACACATC-CACATCC
i calJac3.chr5             n 47777 C 0

a score=1771923.000000
s hg38.chr3_KI270935v1_alt     12876 1112 +    197351 TTGCCAGGGCCCGAGGGAGGGTGGATGGACTTATCCGTCCCATAGGTGTTGCTCGtggctgggtgacttgcttctgccaacgagattttcacagacacggcacaagcagaagcctggaatgtgtgggcactgccaggcctgccgtc-tAAGGCTCTTGATTTTCCCCATGAGATGCACGTGCCCCAGGGAACGGCGGCTCTGGCTGTGGGATGAGAGGCGTGTGGAGCAGTCATGGTTCCCATCCTTAGCCTGGAGTCAAGGCCAGACTAGATCAGCCTAAGCCCAGCCACGCCACGGGTGCAGGAGTGAAGAGCAAATGCTAACTGTCCATGGAATTGACTTTCAAAGGGGCGTGTCATGT-----GCCTCATCCCAGCAACAGGGAAGGCATTTCTCTATCAGTCAGTTGGTAAATGATTATTGACAAACAATgtgctgggaaggtggagtgatttgagtagatttggcctctattctcatggagcttcctttctagaggggaaggcagatgatggatggataaatataaatgattctaataggttggtgcagcagt---------------cattaaaagtaatggc-gaaaaaaaaaacaaaagaaacggggaGGAGCCGTTGCTGCCGTTcattaatagtaatggcaaaacccgcgatgacttgtgcgccaacctaaCCCAGTAACCACGGGTGTGC-AAATGTGGCAATGGGCAAGTTCCGAGTGCTAGGAGAGCATCTAGCTTCCCGGAGTCAGGAGACGGGGGTTGGCAACCTAACCAAGGTTAAGTCCAAGTGAGGGGGGTGGGCagggagcgatatttcagtggagactccaaggatgaatggtatttag-agagtaaaccccgatag--------ggtgtttgtctggcacagagaagagcctgtgcaaaagctggtggggtgagaggacaccgtgtattcatccacctgaggggcgaccagcaggctggagctcagtgggttgagaggaggatgCAGAGCCCgggaaaggcaccctaggcagagggcacagaagcg-caaaggcctggagtgaggcctgagcctgtgtggtttgaggaacggacagaggcctgtccgtcaggaagggaacggcaccggggagagaccttaggc
s panTro4.chr3                637204 1111 - 202329955 TTGCCAGGGCCCGAGGGAGGGTGGATGGACTTATCCATCCCATAGGTGTTGCTCGtggctgggtgacttgcttctgccaacgagattttcacagacacggcacaagcagaagcctggaatgtgtgggcactgccaggcctgccctc-tAAGGCTCTTGATTTTCCCCATGAGATGCACGTGCCCCAGGGAACGGCGGCTCTGGCTGTGGGATGAGAGGTGTGTGGAACAGGCATGGTTCCCATCCTCAGCCTGGAGTCAAAGCCAGACTAGATCAGCCTAAGCCCAGCCACGCCACGGGTGCAGGAGTGAAGAGCAAATGCTAACTGTCCATGGAATTGACTTTCAAAGGGGCGTGTCATGT-----GCCTCATCCCAGCAACAGGGAAGGCATTTCTCTATCAGTCAGTTGGTAAATGATTATTGACAAACAATgtgctgggaaggtggagtgatttgagtagatttggcctctattctcatggagcttcctttctagaggggaaggcagatgatggatggataaatataaatgattctaataggttggtgcagcagt---------------cattaaaagtaatggc-aaaaaaaaaaaagaaagaaacggggaGGAGCCGTTGCtgcagttcatgaatagtaatggcaaaacccgcgatgacttgtgcgccaacctaaCCCAGTAACCAGGGGTGTGC-AAATGTGGCGATGGGCAAGTTCCGAGTGCTAGGAGAGCATCTAGCTTCCCGGAGTCAGGAGACGGGGGTTGGCAACCTAACCAAGGTTAAGTCCAagggagggggttgggcagggagcgatatttcagtggagactccaaggatgaatggtatttag-agagtaaaccccgatag--------ggtgtttgtctggcacagagaagagcctgtgcaaaagctggtggggtgagaggacaccgtgtgttcatccacctgaggggcgaccagcaggctggagctcagcgggttgagaggaggatgcagagcccgggaaaggcaccctaggcagagggcacagaaggg-caaaggcctggagtgaggcctgagcc-gtgtggtttgaggaacggacagaggcctgtccgtcaggaagggaacggcacaggggagagaccttaggc
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199666419 1117 + 202140232 TTGCCAGGACCCGAGGGAGGGTGGATGGACTTATCCATCCCATAGGTGATGCTCGTGGTTGGGTGACTTTCTTCTGCCAACGAGGTTTTCACAGACATGGCACAAGCAGAAGCCTGGAATGTGTGGGCACTGCCAGGCCTACCCTC-TGAGGCTCTTGATTTTCCCCATGAGATGTGCATGCCCCAGGGAATGGCGGCTCTGGCTGCATGATGAGAGGCGTGTGGAGCAGACATGGTTCCCATCCTAAGCCTGGAGTCAAGGTCAGACTAGATCAGCCTAAGCGCAGCCACGCCACGGGTGCAGGAGTGAAGAGCAAATGCTAACTGTCTATGGAATTGACTTTCAAAGGGGCGTGTCATGT-----GCCTCATGCCAGCAACAGAGAAGGCATTTCTCTATCAGTCAGTTGGTAAATGATTATTGACAAACCATGTGCTGGGAAGGTGGAGAGATTTGAGTAGATTTGgcctctattctcatgacgcttcctttctagaggggagggcagatgatggat-aataactataaatgattctaataggttggtgcagcagt---------------cattaaaagtaatggcaaaaaaaaaaaaaaaaagaaacggggaGGAGCCGATGCTGCAGTTcattaatagtaatggcaaaaaccgcgatgacttgtgcaccaagctaaCACAGTAACCACGGCTGTGCAAAATGTGGCGATGGGCGAGTTCCGAGTGCTAGGAGAGCATCTAGCTTCCCGGAGTCAGGAGACGGGGGTTGGCAACCTAACCAAGGTGAAGTCCAAGTGAGGGGTGTGGGCAGGGAGCGATATTTCAGTGGAGACTCCAAGGATGAATGGTATTCAG-AGAGCAAACCCCGATAG----AGAAGGTGTGTGTCTGTCACAGAGAAGAGGCTGTGCAAAAGCTGGCGGGGCGAGAGGACACCGTGTGTTCATCcacctgaggggcgaccagcaggctggagctcagcgggttgacaggaggatgcagagcctgggaaaggcaccccaggcagagggcacagcaggg-caaaggcctggagtcaggcctgagcctgtgtgttttgaggaacagacagaggcctgtccggcaggaagggaacggcacaggggagagaccttaggc
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120775823 1116 + 123690457 TTGCCAGGGCCCGAGGGAGGGTGGATGGACTTATCCATCCCATAGGTGTTGCTCGtggctgggtgacttgcttctgccagtgagattttcacagacacggcacaagcagaagcctggaatgtgtgggcactgccaggcctgccctc-tGAGGCTCTTGATTTTCCCCACGAGATGCGCGTGCCCCAGGGAACGGCGGCTCTGGCTGCGGGATGAGAGGCGTGTGGAGCAGGCATGGTTCCCATCCTTAGCCTGCAGTCAAGCCCAGACTAGATGAGCCTAAGCCCAGCCACGCCACGGGTGCAGGAGTGAAGAGCAAATGCTAACTGTCCATGGAATTGACTTTCAAAGGGGCGTGTCATGT-----GCCTCATCCCAGCAACAGTGAAGGCATTTCCCTATCAGTCAGTTGGTAAATGATTATTGACAAACAATGTGCTGGGAAGGTGGACTGATTTGAGTAGATTTGGCCTCTATTCTCATGGGGCTTCCTTTCTAGAGGGGCAGGCAGATGATGGATGGGTAAATATAAATGATGCTAATAGGTTGGTGCAGCAGT---------------CATTAAAAGGAATGGC--AAAAAAAGAAAAGAAGAAATGGGGAGGAGCCGCTGCtgcagttcattaatagtaatggcaaaaaccgcgatgacttgtgccccaacctaaCACAGTAACCACGGGTGTGCAAAATGTGGCAATTGGGAAGTTCCGAGTGCTAGGAGAGCATCTAGCTTCCCGGCGTCAGGACACGGGGGTTGGCAACCTAACCAAGGTTAAGTCCAAGTGAGGAGGGTGGGCagggagcgatatttcagtggagactccaaggatgaatggtatttag-agatgaaaccccgatag----agagggtgtgtgtctggcacagagaagagcctgtgcaaaagccggcggggcgagaggacaccgtgtgttcctccacctgaggggcgaccagcaggctggagctcagcgggttgagaggaggatgcagagcccgggaaaggcaccctaggcagagggcacagcaggg-caaaggcctggagtcgggcccgagcctgtgtggtttgaggaacggacagaggcctgtctggcaggaagggaacggcacaggggagagacctgaggc
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr6                 39515 1113 + 174439528 TAGCCAGGGCCCGAGGGAGGGTGGATGGACTTATCCATCCCACAGGTGTTGCTCGTGGCTGGGTGACTTGCTTCTGCCAACGAGATTTGCACAGACACGGCACAAGCAGAAGCCTGGAATGTGCGGGCACTGCCAGGCCTGCCCTCTTAAGGCTCTTGATTTTCCCCATGAGATGCGCGTGCCCCGGGGAACAGCGGCTCTGGCTGCAGGATGAGAGGCGTGTGGAGCACACATGGTTCCCACGCTCAGCCTGGAGTCAAGCCCAGACTAGATCAGCCTAAGCCCAGCCACGCCACAGGTGCAGGAGTGAAGAGCAAACGCTAACTGTCCATGACAGTGGCTTTCACAGGGGCGTGTCGTGT-----GCCTCATCCCAGCAACGGTGGCGGCATTTCTCTGTCAGTCAGTCGGGAAATGATGATTGACAAGCAGTGTGCTGGGAAGCTAGAGTGATTTGAGTAGATTCTGCCTCTCTTCTCACGGAGCTTCCTTTCTAGAGGGGAAGGCagatgatggatgaataaatataaGTGATTCTAATAGGTTGGGGCAGcagt---------------cattaaaagtaatggc-------aaaaaaaaaaaaagtgggaaggaGCTGGTGCTGCAGTTCGTTAATAGTAATGGCAAAAATCTCGATGActtctgcaccaacctaacaCAGTAATCACGGGTGTGCAAAATGTGGCAATGGGGGAGTTCCAAGTGCTAGGATGGCATCTGGCTTCCTGGAGTCTGGAGAT--GGGTTGGCAACCTAACCAAGGTTAAGTCCCAGTGAGGGG-GTGGGCAGGGAGCGATATTTCAGTGGAGACTCCAAGGATGAATGGTATTTAG-AGAGTAAACCCCGGTAGTGAGAGGGGGAGTGTGTCTGGCACAGAGAAGAGCCTGTGCGAAGGCTCTTGGTGTGAGAGGACACTGTGTGTTCATCCACCTGAGGGGCGACCAGCATGCTGGAGCTGAGTGAGTTAAGAGGAGGATGCGGAGCCCGGGAAAGGCAccccaggcagagggcacagcaggG-GAAAGGTCCAGAGTCAGGCCTGAGCCTCTGTGGTTTGGGGAACTGGCAGAGGCCTGTCCGGGAGGAAGGGAATGACAGAGAGAAGAGACCTTAGGC
i papAnu2.chr6             I 1005 I 122
s chlSab2.chr4              89545943 1113 -  91010382 TAGCCAGGGCCCGAGGGAGGGTGAACGGACTTATCCATCCCACAGGTGTTGCTTGtggctgggtgacttgcttctgccaacgagatttgcacagacacggcacaagcagaagccttgaatgtgcgggcactgccaggcctgccctc-tAAGGCTCTTGATTTTCCCCATGAGATGCGCGTGCCCCAGGGAACAGCGGCTCTGGCTGCAGGATGAGAGGCGTGTGGAGCACACATGGTTCCCACGCTCAGCCTGGAGTCAAGCCCAGACTAGATCAGCCTAAGCCCAGCCACACCACGGGTGCAGGAGTGAAGAGCAAATGCTAACTGTCCATGACAGTGGCTTTCAAAGGGGCATGTCAGGT-----GCCTTATCCCAGCAACGGTGACGGCATTTCTCTAtcagtcagtcagtaaatgattattgacaagcagtgtgctgggaagctggagtgatttgagtagatttggcctctgttctcatggagcttcctttctagaggggaaggcagatgatggatgaataaatataaatgattctaataggttggggcagcagt---------------cattaaaagtaatggc------aaaaaaaaaaaaaagtgggaaggagCTGGTGCTGCAGTTcgttaatagtaatggcaaaaaccgtgatgacttctgcaccaacctaaCACAGTAATCACGGGTGTGCAAAATGTGGCAATGGGGGAGTTCCAAGTGCTAGGATGGCATCTGGCTTCCTGGTGTCAGGAGAT--GGGTTGGCAACCTAACCAAGGTTAAGTCCCAGTGCGGGG-GTGGGcagggagcgatatttcagtggagactccaaggatgaatggtatttag-agagtaaaccccgatagtgagagggggagtgtgtctggcacggagaagagcctatgccaaggccggtggggcgggaggacaccatgtgttcatccacctgaggggcaaccagcaggctggagctgagtgagttaagaggaggatgtggagctggggaaaggcaccccaggcagagggcacagcaggg-gaaaggtccggagtcaggcctgagcctctgtggtttggggaactggcagaggcctgtccaggaggaagggaatggcagaggggagagaccttaggc
i chlSab2.chr4             I 6 C 0
s calJac3.chr5              41952953 1107 + 159171411 TTGCCAGGGCCTGAGGGAGGCTGGAGAGACTTATCCATCCCATAGGTGCTGCTTGTGCCTGGGTGA-------------------TTTTAATAGACACTGCACAAGCAGAAGCCTGAAATGTGTTGGCACTGCCAGGCCTGCCCTC-TAATGCTCTTGATTTTTCCCATGAGATGAGTGTGCCCCAGGGAACGTCGGCTCCAACTGCAGGTTGAGAGGCATGTGGAGCACGCATGGTT-CCACCCTCAGCCTGGAGTCAAGTCCAGACTAGATCAGCCTCAGCCCAGCCAAGCCCCGGGTGCAGGAGTGAAAAGCAAATGCTAACGGCCCATGACACTGACTTTCAAAGGGGAGTGTCCTGTCACGGGCTTCCTCCCAGCAACAATGAAGGTGTTTCTCTATCAGTCAGTCGGTAAATAATTACCCACAAATAATGTGCTAGGAAGGTGGAGCGATTTGAGTCgatttggtccctatactcgtggagcttgctttctagaggggaagacagatgatggatgaataaatataaaTGATTCTAttaggttggtgcagcagtaattctggtttttgccgttaaaagtaatggc------------aataaAAAGCGGGTAGGAGCTGGTGCTGCAGTTcattaaaagtaacagcaaaaactgcggtaacttccgcaccaacctaaTAGAATAATTACGAGCGTGCAAAACGTTGCAATGGGCAAGTTCCAAGTGCTGGGATGGCATCTAGCTTCCTGGAGTCAGGAGACAGGGTTTGGCAACCTAGCCAAGGTTAAGTCCAAGTGATGGGGGCGGGCagggagcgatatttcagtggagactccaaggatgactggtaattagaaaagtaaacccagatgtgaaagggggaagcatttcaggcaaagagaagagtgtgtgcaaaggcctatggg--aggaggacattgtgtatctatcaaccttcggggcaaccagcaggctggagctgagcacgttgagaggaggacg-ggagccggggaaaggcaacccaggcaga-ggcatagcagggacaaaagcctggagtcaggcctgaacctgtgtggtttgaggaaccgacagaggcctgtccgacaggaaagtaacagcagaggggaga-ccattaggc
i calJac3.chr5             C 0 C 0

a score=996.000000
s hg38.chr3_KI270935v1_alt     13988 5 +    197351 cacag
s panTro4.chr3                638315 5 - 202329955 cacag
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199667536 5 + 202140232 cagag
i ponAbe2.chr3             C 0 C 0
e calJac3.chr5              41954060 0 + 159171411 C
e chlSab2.chr4              89547056 0 -  91010382 C
e papAnu2.chr6                 40628 122 + 174439528 I
e nomLeu3.chr11            120776939 0 + 123690457 C

a score=80977.000000
s hg38.chr3_KI270935v1_alt     13993 53 +    197351 cagagggcagggcagagggcagggccgtgctgggcactgtgggctgtggatgg
s panTro4.chr3                638320 53 - 202329955 cagagggcagggcagagggcagggccgtgctgggcactgtgggctgtggatgg
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199667541 53 + 202140232 ctgagggcagggcagagggcagggctgtgctgggcactgtgggctatggatgg
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120776939 46 + 123690457 -------cagagcagagggcagggctgtgctgggcactgtgggcTGTGGATGG
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr6                 40750 53 + 174439528 CATAGGCCAGGGTAGAGGGCAGGGCcgtgctgggcactgtgggctGTGGATGG
i papAnu2.chr6             I 122 I 130
s chlSab2.chr4              89547056 46 -  91010382 -------cagagtagacggcagggccgtgccgggcactgtgggctctggatgg
i chlSab2.chr4             C 0 I 1
s calJac3.chr5              41954060 44 + 159171411 -------cagggcagagggcagggccatgctgggcactgtgggctgtggat--
i calJac3.chr5             C 0 C 0

a score=33515.000000
s hg38.chr3_KI270935v1_alt     14046 26 +    197351 tgctggcatttaagaggggagaccaT
s panTro4.chr3                638373 26 - 202329955 tgctggcatttaagaggggagaccaT
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199667594 26 + 202140232 tgctggcatttaagaggggagaccat
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120776985 26 + 123690457 TGCTGGCATTTCAGAGGGGAGACCAT
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr6                 40933 26 + 174439528 TGCTGGCATGTAAGAGGGGAGTCCAC
i papAnu2.chr6             I 130 C 0
s chlSab2.chr4              89547103 26 -  91010382 tgctggcatttaAGAGGGGAGACCAT
i chlSab2.chr4             I 1 I 2373
e calJac3.chr5              41954104  0 + 159171411 C

a score=362810.000000
s hg38.chr3_KI270935v1_alt     14072 241 +    197351 AGACCAGGGCAGAGGGCAGGGCCGTGCTGGGCACTTCGGGCTGTGGATGGGAGCTGGCATTTATGCTCAGGTGATGGGAATGTGTTAAAAGATTTTAAGGAGGGGAGTAACAGTTGGGATTAATGTGTATTCTGGGAATCTCAACAAAGTAAATTCATAGTTTGAATTTTCATAAGACTTCTGCACAGGCAGAGAGAAATAAGATCATGTCTACAGCTGTGTGAT--GATTTTATTGAAAAAC
s panTro4.chr3                638399 241 - 202329955 AGACCAGGGCAGAGGGCAGGGCTGTGCTGGGCACTTTGGGCTGTGGATGGGAGCTGACATTTATGCTCAGGTGATGGGAATGTGTTAAAAGATTTTAAGGAGGGGAGTAACAGTTGGGATTAATGTGTATTCTGGGAATCTCAACAAAGTAAATTCATAGTTTGAATTTTCATAAGACTTCTGCACAGGCAGAGAGAAATAAGATCGTGTCTACAGCTGTGTGAT--GATTTTATTGAAAAAC
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199667620 241 + 202140232 agaccagggcagagggcagggccatgCTGGGCACTTCAGGCTGTGGATGGGAGCTGGCATTTATGCTCAGGTGATGGGAATATGTGAAAAGATTTTAAGGAGGGGAGTAAGAGTTGGGATGAATGTGTATTCTGGGAATCTCAACAAAGCAAATTCATAGTTGGAATTTTCATAAGATTTCTGCAAAGGCAGAGAGAAATAAGATCGTGACTACAGCTGTGTGat--tattttatttaaaaat
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120777011 241 + 123690457 AGACCAGGGCAGAGGGCAGGGCCGTGCCGGGCACTTTGGGCTGTGGATGGGAGCTGGCATTTATGCTCAGGTGATGGGAATATGTTAAAAGATTTTAAGGAGGGGAATAGCAGTTGGGATTAATGTGTATTCTGGGAATCTCAACAAAGTAAATTCATAGTTTGAATTTTCATAAGACTTCTGCACAGGGAGAGAGAAATAAGATCGCGTCTACAGCTGTGTGAT--GATTTTATGTAAAAAT
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr6                 40959 240 + 174439528 AGACCATGGCAGAGGGCAGGGCCATCCTGGACACCTTGGGCTGTGAATGGGAGCTGGCATTTATGCTCGGGTGATGGGAACATGTTAAAAGATTTTAAGGAGAGGAGTAACATTTGGGATTAATGTGTATTCTGGGAATCTCAACAAAGTAAATTCATAGTTTGAATTTTCACAAGACTTCTGTACAGGCAGAGAGAAATAAGATCGCGTCTACGGCTGTGTgtt--gattatattaaaaat-
i papAnu2.chr6             C 0 I 328
s chlSab2.chr4              89549502 240 -  91010382 AGACCAGGGCAGAGGGCAGGGCCATCCTGGACACCTTGGGCTGTGAATGGGAGCTGGCATTTATGCTCGAGTGATAGGAACATGTTAAAAGATTTTAAGGAGGGGAGTAACATTTGGGATTAATGTGTATTCTGGGAATCTCAACAAAGTAAATTCATAGTTTGAATTTTCACAAGACTTCTGTACAGGCAGAGAGAAATAAGATCGCGTCTACGGCTGTGTGTT--GATTATATTAAAAAT-
i chlSab2.chr4             I 2373 C 0
s calJac3.chr5              41954104 194 + 159171411 ------------------------------------------------gggagctggcatttatgctccggtgagggggacatgttagaagcttttaaggagggcagtaacatTTGGGGATAATATGTATTCCGGGAATGCCAACAAAGTGAATTCATAGTTTGGATGTTCCTAAGACTTCTGCACAGGCACAGAGAAATAAGATCATTTCTACAGCTGTGAGATAAGATTATATTAAAAAT-
i calJac3.chr5             C 0 C 0

a score=627928.000000
s hg38.chr3_KI270935v1_alt     14313 449 +    197351 ATTACTAAGTTTTTAAACGTGATTTCAAATGGTGTGTTTCTGTTTCACCTT-GGACATAAGTAGATTGCAAGGCTAATGGAAAGTAGAAAAGTTAATTCA------TGAACATAAAAGAGATATCAATTTGAAAACAAAACGTTTATTCATTTACTTCCGCTGCAGATTTCTTGACTGCTGAATTTCATGAGAAGGGATTGTTCAGGGAGGGACATGGGGCTGAAGACCTGGAGAGGAGGTGGTGCTACCGCTGTTCAAATCTGAGGGTGGTGGAGATGGAGCCTTGGGGAGGAGCAGGTGCTGCCTTTTAAGTCTATGAGAGTCGTTGAGCTGGAGGTCCAGGGAGGAGCCAGTGCTCCCACTGATGTCTTA-------GGttgtggagctgaagacaatgaaggagccagtgtggctgt---tctgtgagactcgtggagctggagatccaggtggg----agaggtg
s panTro4.chr3                638640 449 - 202329955 ATTACTAAGTTTTTAAACGTGATTTCAAATGGTGTGTTTCTGTTTCACATT-GGACATAAGTAGATTGCAAGGCTAATGGAAAGTAGAAAAGTTAACTCA------TGAACATAAAAGAGATATCAATTTGAAAACAAAACATTTATTCATTTACTTCCGCTGCAGATTTCTTGACTGCTGAATTTCATGAGAAGGGATTGTTCAGGGAGGGACGTGGGGCTGAAGACCTGGAGAGGAGGTGGTGCTACCGCTGTTCAAATCTGAGGGTGGTGAAGATGGAGCCTTGGGGAGGAGCAGGTGCTGCCTTTTAAGTCTATGAGAGTCGTTGAGCTGGAGGTCCAGGGAGGAGCCGGTGCTCCCACTGATGTCTTA-------GGttgtggagctgaagacaacgaaggagccagtgtggctgt---tctgtgagactcgtggagctggagatccaggtggg----agaggtg
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199667861 448 + 202140232 attaCTAAGATTTAAAACGTGATTTCAAATGGTGTGTTTCTGTTTCACATT-GGACATAAGTAGATTGCAAGGCTAATGGAAAGTAGAAAAGTTAACTCC------TGAACATAAAAGAGATATGGATTTGAAAACAAAACATTTATTCATTTACTTCCGCTGCAGATTTCTTGACTGCTGAATTTCATGAGAAGGGATTGTTCAGGGAGGGTCGTGGGGCTGAAGACCTGGAGAGGAGCTGGTGCTACCGCTGTTCAAATCTGAGGGTGGTGGAGATGGAGCCTTGGGGAGGAGCAGGTGCTG-CTTTTAAGTCTATGAGAGTCATTGAGGTGGACGTCCAGGAAGGAGCCGGTGCTCCCACTGATGTCTTA-------GGttgtggagctgaagacaatgaaggagccagtgtggctgt---tctgtgagagtcgtggagctggagatccaggtggg----agaggtg
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120777252 446 + 123690457 ACTACTAAGTTTTTAAACGTGATTTCAAATGGTGCGTTTCTGTTTCACATT-GGGCATAAGTAGATTGCAAGGCTAATGGAAAATAGAAAAGTTAACTGA------TGAACATAAAAGAGATACCGATTTGAAAACAAAACATTTATTCATTTACTTCAGCTGCAGTTTTGTTGACTGCTGAATTTCATGAGAAGGGATTGTTCCGGGAGGGTCGTGGGGCTGAAGACCTGGAGAGGAGCTGGTGCTACCGCTGTTCAAATCTGAGGGTGGTGGAGATGGGGCCTTGGGGAGCAACAGGTGCTGCCCTTTAAGTC--TGAGAGTCATTGAGCTGGACGTCCAGGGAGGAGCCGGTGCTGCCGCTGATGTCTTA-------GGTTGAGGAGCTGAAGACAATGAAGGAGCCAGTGTGGCTGT---TGTGTGAGGGTCGTGGAGCTGGAGAT-CAGGTGGG----AGAGGTG
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr6                 41527 454 + 174439528 atttctaagtttttaaacATCATTTCAACTGGTGTGTTTCTGTCTCACATT-GGACATAAGTAGATTGCAAGgttaatggaaaatagaaaagttaaCTCA------TGAACATAAAAGAGATACcgatttgaaaacaaaacatttattcatttacttctgctgCAGTTTTCTTGACTGCTGAATTTCGTGAGAAGGGATTGTTCAGGGAGGGTTGTGGGGCTGAAGACCCGGACAAGAGCTGGTGCTACTGCTATTCAAATCTGAGGTTGGTGGAGCTGGAGCCTTGGGGAGGAGCCGACGCTGCCTTTTAAGTC--TGAGAGTGGTTGAGCTGGAGGTCCACGGAGGAGCTGGTGCTGCCACTGATGTTTTA-------GGTTGTGGAGCTGAAGACAGTGAAGGAgccagtgtggctattcctctgtgagggtcgtggagctggagacGCATGGAGGAGCCGgagttg
i papAnu2.chr6             I 328 I 4
s chlSab2.chr4              89549742 444 -  91010382 ATTTCTAAGTTTTTAAACGTCATTTCAACTGGTGTGTT--TGTCTCACATT-GGACATAAGTAGATTACAAGGTTAATGGAAAGTGGAAAAGTTAAGTCA------TGAACATAAAAGATACATCGATTTGAAAACAAAACATTTATTCATTTACTTCCGCTGCAGTTTTCTTGACTGCTGAATTTCGTGAGAAGGGATTGTTCAGGGAGGGttgtggggctgaagacccgggcaggagctggtgctaccgctgttcaaatctgag---ggtggagctggagccttggggaggagCCGACGCTGCCTTTTAAGTC--TAAGAGTCGTTGAGCTGGAGGTCCACGGAGGAGCTGGTGCTGCCACTGATGTCTTA-------GGTTGTGGAGCTGAAGACAGTGAAGGAGCTGGTGTGGCTGTTCCTCTGTGAGGGTCGTGGagctggagatccaggggg-----agaggtg
i chlSab2.chr4             C 0 I 1584
s calJac3.chr5              41954298 404 + 159171411 ATTGCTAAGTTTTTAAAGGTCATTTCGAATGGTGGATTTCTATCTTACATTAGGACATAGGTAGGTTGCAAGGTTGACAGCAAGTAGAAAAGTTTCCTGACTCGTGTGAACATAAAAGAAACATCGATTTGAAAGCAAAACATTTATTCATTTACTTCCTCTGCAGTTTTCTTGACTGCTGAATTTCATGAGAAGGGATT----------GGTAATGAGG--------------------------TGCTGTCTTTCAAGTATGAGAGTTGTTGAGCTGGAGGTGCAAGGAAG------TGCTGCTGTtctaggg--ggagggttgtcgagctggagacccagggaggtgcag----------tgttgttctagttcgagggtcatggagctggaaacccagggaggagtggtggtgtttt---tgtttgagagtcgtggagctggagacccacagagg----ag-----
i calJac3.chr5             C 0 C 0

a score=6709.000000
s hg38.chr3_KI270935v1_alt     14762 15 +    197351 ttttagctcggggaa
s panTro4.chr3                639089 15 - 202329955 ttTTAGCTCGGGgaa
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199668309 15 + 202140232 ttCTAGCTCGGGGAG
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120777698 15 + 123690457 TTCTAGCTCGGGGAG
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr6                 41985 15 + 174439528 ttctagttgaggGTC
i papAnu2.chr6             I 4 I 18
s calJac3.chr5              41954702  8 + 159171411 ctgcggtt-------
i calJac3.chr5             C 0 C 0
e chlSab2.chr4              89550186 1584 -  91010382 I

a score=164829.000000
s hg38.chr3_KI270935v1_alt     14777 164 +    197351 gag---------ctgatgttctaccttgagggtcgtgcagctgcagacccggggaggagc-tga------tgttctagattgagggtcgtgc-----agctgcagacccggggaggag------ctgatgttct---------agattgagggtcgtgcagctgcagacccggggaggagc------tga------tgttctagattgaggg
s panTro4.chr3                639104 164 - 202329955 gag---------ctgatgttctactttgagggtcctgcagctgcagacccggggaggagc-tga------tgttctagtttgagtgtcatgc-----agctgcagacccggagaggag------ctgatgttct---------agattgagggtcatgcacctgcagacccggggaggaac------tga------tgttctagtttcagtg
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199668324 164 + 202140232 GAG---------CTGATGTTCTACCTTGAGGGCCCTGCagctgcagacccggagaggagc-tga------tgttctagattgagggtcttgc-----acctgaagacttgaggaggag------ctgatgttct---------agattgagggtcgtgcagctggagagctggagaggagc------tta------tgttctagtttgaggg
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120777713 164 + 123690457 TAG---------CTGATGTTCTACCGTGAGGTCCCTGCAGctgcagacccggagaggcat-tga------tgttgtagattgagggccgtgt-----agctggagacccggtgaggag------ctgatgttcc---------agtttgaggatgttgcagctgcagacgtggagaggagc------cga------tgttctagtttggggg
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr6                 42018 186 + 174439528 GAGTAGCCGCTATTGATGTTTTTGTTTAagggtcatggagctggagatACAGGGTGGAgcgttg------ttttctagtttgtgggtcGTGG-----ACCTGGAGACCTGTGGAGGAGGTGTCCTTGGTGTTTC---------TGGTTGAGGGTCGTGGAGTTGGAGACACGTGGAGGAGCCATTGTTGG------TATTTCTAGTTGAGGA
i papAnu2.chr6             I 18 C 0
s chlSab2.chr4              89551770 162 -  91010382 gag---------ctgatgttccagtttgagggccgtgcagctggag-cccagggctgagc-cga------cgttccagtttgagggctgtgt-----agctggagacccagcagggag------ctgatgttcc---------agtttgagggccgtgcagctgtagatctg-gggggagc------tga------tgttccagtttgaggg
i chlSab2.chr4             I 1584 I 13243
s calJac3.chr5              41954710 188 + 159171411 --g---------ttattgtttaagtctgaggATGGTGGAGCTGGAGCCCTGGGGAGGAGC-TGGTGCTGCTGTTCTTGTTTGAGGGTCTtgggttgaagctggagacccagggaggag------ccagtgttgtttttgtttaggtctgagggtcgtggagcttgagactctgggaggaac------tggtgccgttgttctagtttgaagg
i calJac3.chr5             C 0 C 0

a score=39971.000000
s hg38.chr3_KI270935v1_alt     14941 57 +    197351 tcgtgcagctgcagacccggggaggagctgatg---------ttctagat-------tgagggtcgtgcagct
s panTro4.chr3                639268 57 - 202329955 tcgtgcagctgcagacacggggaggagctgatg---------ttctagtt-------tgagtgtcgtgcagct
i panTro4.chr3             C 0 M 4730
s ponAbe2.chr3             199668488 57 + 202140232 tcttgcaactgcagacctggagaggagctgatg---------ttctagtt-------tgagggtcgagcagct
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120777877 57 + 123690457 tcttgcagccgaagacctggggaggagctgatg---------ttccggtt-------tgaggatcttgcagcc
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr6                 42204 64 + 174439528 TCGTGGAGCTGGAGTCCCGCAGAGAATCCGGTG---------TTTGGTGTTTCTTGCTGAGGGTCATGGTGCT
i papAnu2.chr6             C 0 I 50
s calJac3.chr5              41954898 66 + 159171411 tcatagaactggagacccagacaggagctggtgctactggtattcagatc-------tgagggtggtggagct
i calJac3.chr5             C 0 C 0
e chlSab2.chr4              89551932 13243 -  91010382 I

a score=122915.000000
s hg38.chr3_KI270935v1_alt     14998 382 +    197351 gcagacccggggaggagctga------tgttctagattgagggtc-gtgcagctgcagacccggggaggagc------tgatgttctagattgagggtcgtgcagctgcagacccggggaggagctgatg-------ttctagattgagggtcgtgcagctgcag-------------------------------------------------acccggggaggagc------tgatgtt---------ctagattgagggtcgtgcagctgcagacc-cggggaggagc------tgatgttctagattgagggtcgtgcagctgcagacccggggaggagc-tga------tgttctagatagagggtcatgcagctgaagactcggggaggagctgatgttgt------agt------ttgagg-----------------------------------------------gtcatgcagttgaggactttgggaggagCTGATGTTGTT-CGT-------GTTGAGGGTCTTTCAGCTGGGG
s ponAbe2.chr3             199668545 475 + 202140232 gcagacctggagaggaactga------tgtactagattgaaggtt-ttgcagctgcatacctggagaggagc------tgatgttcttgtttgagggtcatgcagctgcagacctggagaggagCTGATG-------TTCTAGATTGAGGGTCTTGCAGCTGAAGACTTGAGGAGGAGCTGATGTTGTTCGCTTTGAGGGTCTTTCACTTGGACACTCAGGGAGGAGC------TGATGTT---------CTACATTTAGGGTCACAGaactggagacc-tggagagaagg------tgatgttctagttttagagtcttgcagctgcagacccagaaaggagc-tga------tgttctagtttgagggtcttgcagctgcagagctggagaggagctgatgttct------aat------ttgagGGTCGTGCTGCTGCAGACCTGGAAGGGAGCTGATGTTCTACATTCAGAGTCGTGCAGCTGAAGACTTGGGAAGGAGCTGA---TGTT-CGC-------GTTGAGGGTCTTTCAGGTGGAG
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120777934 379 + 123690457 gcagacccggggaggagccga------tgttccggtttgagggtctttgcagccgtagaaccggggagaagc------tgatgttccggtttcagagtattgcagccgcggagccgtggaggagctgatg-------ttccagtttgagggtcttgcagctgcg--------------------------------------------------acccgggaaggagc------tgatgtt---------ctggtttgagggtcttgcagctgc-gacc-cgggaatgagc------tgatgttctggtttgggcgtcttgcagccgcagacccagggaggagc-tga------tgttccagtttaagggtcttgcagccacacacccggggaggagctgatgttcc------ggt------ttcagg-----------------------------------------------gtcttgcaggcgcagacccggggaggagctga---tgttccgg-------ttttagGGTCTTGCAGCTGCAG
i nomLeu3.chr11            C 0 I 846
s papAnu2.chr6                 42318 410 + 174439528 NNaGCC-------GGTGTTGG------TGTTTGTAGTTGAGGGTC-GTGTCGCTGGAGACCCGCGGAGGAGCCGgtgttggtgtttctagttgaggTTTGGGGAGTTGGAGACCCGTGGAGGAGCTGGTGTTAGTGTTTCTAG-TTGAGGGTTGTGGAGGAGAAG-------------------------------------------------ACCTGCAGAGGAGCCGgtgttggtgtt---------tctagttgaggTTTGGGAAGTTGGAGACC-TGTGGAGGAGCCATTGTTGGTGTTTCTCGTTGACTGTTGTGGAGCTGGAGATATAGGGTGATgcgttg------ttttctagtttgtggttTGCGGAGCTGGAGACCCGCGGAGGAGCCGGTTTTGT------TGTTTCTAATTGAGG-----------------------------------------------atcatggagctggagacctgCGGAGGAGCCCA---TGTT-GGTGTTTGTAGTTGAGGGTTTTGGAGCTGGAG
i papAnu2.chr6             I 50 C 0
s calJac3.chr5              41954964 424 + 159171411 ggagacccagggaggagCCGGTGCTGCTGTTCTTCTTTGAGGGTG-GTGGAGCTGGAGACCCAAGGTGCAGCTGCTGCTGCTGTTCTAGTGTGAGGGTCTTGGAGCTGGAGCCTTGGTGAGGAGCCGATG-CTGCCTTTCAAGTCTGAGAGTCATTGAGCTGGAG-------------------------------------------------ATCCAGGGAGGAGC------CGGTGCTATCACCATGCAATTCTGAGGGTCATGGAGATGATGGCCTCAGGGAGGAGC-------ACAGTTGAAGTTTGAAGGTTGTG-AGCTGGAGATCCAGGGAGGAGC-TGGTGCTGCTGTTGTAGTTTTAGGGTTGGGGAGCTGGAGGCTTCGGGAGGAGCCAGTGCTGCCTCTCAAGT------CTGAGA-----------------------------------------------Gttgttgagctggagacccagggaggagccgg---tgct-gctgctgtaatttgaggatcatgaatctggag
i calJac3.chr5             C 0 C 0
e chlSab2.chr4              89551932 13243 -  91010382 I
e panTro4.chr3                639325 4730 - 202329955 M

a score=73601.000000
s hg38.chr3_KI270935v1_alt     15380 212 +    197351 ACTCAGGGAGG------AGCTGATAAtct------tgattaagggtcatggagctggagacccagacaggagc------tgatgttctagttagtggatcttccagctacagagtcagagaggagct-----------------------------------------------gatgttctagattgagggtcatgcagctgaatactcggggaggagc------tgatgttgtagtttgagggtcatgcagttgaggacttcgggaggagctgatgttg----tt
s ponAbe2.chr3             199669020 257 + 202140232 ACTCAGGGAGG------AGCTGATAATAT------Tgattgagggtcatggagctggagacctggacaggaga------tgatgttctagttagtggatcttccagctgcagacccagggaggagctgatgttctactgttaggttcttgcagctgcagacccggagaggagaggatgttctagattgagagtcatgtagctgaagactc-aggaggagc------tgatgttgtagtttgaggttcatgcagttgaggactcagggaggagCTAATG-TG----TT
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120779159 210 + 123690457 ACCCGTGGAGG------AGCTGATATTCC------GGTTTGAGGGTCTTGCATCTGCGGACCCGGGGAGGAGC------TGAAGTTCTGGTTTGAGGGTCTTGCAGCCGCAGACCCGGGGAGGAACT-----------------------------------------------GATGTTCCGGATTGGGGGTCTTGCagccgcagacccggggaggagc------tgatgttcccgtttcggagtattgcagctgcagacctggggaggagctgatg-t-----tc
i nomLeu3.chr11            I 846 C 0
s papAnu2.chr6                 42728 234 + 174439528 ACTCGCGGAGGAACTGCagttggtgtttc------tagttgatGTTTGTGGAGCGGGAGATACACGGTGGAgc-----attgttttctagtttgtgggttGTGGAGCTGGAGATCTGTGGAGGAGCTGTCATT-----------------------------------------GGTGTTTCTGGTTGAGGGTT-TGGAGTTGGAGACACATGGAGGAGCCAttgttggtgtttctagttgaggATCGTGGAGCTGGAGTCCCGCGGAGGATCCGGTGTTGGTGCTT
i papAnu2.chr6             C 0 C 0
s calJac3.chr5              41955388 235 + 159171411 acctggggagg------agctagtgttgctgttgatgtttgagggtcaggaagctggagacccggggaggagccggtgctgctgttgtagtttgaggattgtggagctggagacccggggaggagctggtgct-----------------------------------------gcagctgtagtttgaggtttgtggagctgtagacccggggaggagctggcactgtagttgatgtttgagggtcgaggagctgga-atctggggaggagCCGGTGCTG----CT
i calJac3.chr5             C 0 I 6840
e chlSab2.chr4              89551932 13243 -  91010382 I
e panTro4.chr3                639325 4730 - 202329955 M

a score=22126.000000
s hg38.chr3_KI270935v1_alt     15592 125 +    197351 cACGTTGAGGGTCTTTCagctg-gggactcagagagga------gctgataatcttgattgagggtcatggagctggaaacctagacaggagttgatgttctagttagtggatcttccagctgcagacccag
s ponAbe2.chr3             199669277 126 + 202140232 CGCGTTGAGGGTCTTTCAGCTCTTAGACTCAGGGAGGA------GCTGATAAtcttgattgagggtgatggagctggagacccggacaggagctgatgttctagtcagtggatcttccagctgcagacccag
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120779369 118 + 123690457 tgctttgagggtctcgcagctg-cagac-cagggagga------gctgatattcgggtttgagggtc------ttacagacccgtgaaggagctgatgttccagttGGACGGTCCTGCAGCCATGGACCTGG
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr6                 42962 109 + 174439528 CTTGCTGAGAGTCATGGTGCTG-GAGACCTGTGGAGGAGAAGctgttggtgtttctagttgaaTGTTGTGAAGCTGGAGACCCGC-CAGGAGCCGGTGTTGGTGTTTGTAG---------------------
i papAnu2.chr6             C 0 C 0
e calJac3.chr5              41955623 6840 + 159171411 I
e chlSab2.chr4              89551932 13243 -  91010382 I
e panTro4.chr3                639325 4730 - 202329955 M

a score=184780.000000
s hg38.chr3_KI270935v1_alt     15717 391 +    197351 ggaggagctgatgttctagtttgagggtcgtgcagctgaagacccggggaggagc------tgatgttctagattgagggtcgtggagctgcagacgcggagaggagc------tgatgttctagtttgagggtcgtgcagctggagacctggagaggagc-tgatgttct--agtttgaggttcttgcagctgcagacctggagaggagctgatgttct------agattgagggtcgtgcagctgcacacttggagaggagc------tgatgttctagattgagggtct-----------------------------------------------tgcagctgcagacctggagaggagctgatg-------ttctagtttgaggatcttgcagctgcagacccggagaggagc-tgatgttctactttgagggtcgtgcagctggagacctggagaggagctgatgtt
s panTro4.chr3                644060 391 - 202329955 GGAGGAGCTGATGTTCTAGTTGAGGGGTCTTGCAGCAGCagacccggagaggagc------tgatgttgtagtttgagggtcttgcagctgcagacctggagaggagc------tgatgttctagattgagggtcgtgcagctgaagactcggagaggagc-tgatgttct--agattaagggtcatgcagctgaagactcagagagaagctgatgttct------agattgagggtcgtgcagctgcacacttggagaggagc------tgatgttctagattgagggtct-----------------------------------------------tgcagctgcagacctggagaggagctgatg-------ttctagtttgagGATCTTGCagctgcagacctggagaggagc-tgatgttctactttgagggtcgtgcagctggacacctggaggggagctgatgtt
i panTro4.chr3             M 4730 C 0
s ponAbe2.chr3             199669403 393 + 202140232 ggaggagctgatgttctactgttaggttcttgcagctgcagacccggagaggagc------tgatgttctagattgagggtcatgcagctgaagactcggggaggagc------tgatgttgtagttagaggttcctgcagttgaggactctgggaggagC-TGATGTTGTTCGCGTTGAGGGTCTTTCAGCTGGAGACTCAGGGAGGAGCTGATAAtct------tgattgagtgtcatggagctggagacccggacaggagc------tgatattctagtcagtggatct-----------------------------------------------tccagctgcagaccccaggaggagCTGAGG-------TTCTACTGTTAGGTTCTTGCAGTTGCAGACTCGGAGAGGAGC-TGATGTTCTAGATTGAGGGTCATGCAGCTGAAGGCTCGGGGAGGGGCTGATGTT
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120779487 437 + 123690457 GGAGGAGCTGATGTTCCGGTTTCAGGGTCTTGCagctgcggacccggggaggagc------tgatgttcttgtttgagggtcttgaagccgcggacccggggaggagc------tgatgttccggtttgagggtcttgcagccacagacccttggaggagc-tgatgttcc--ggtttgagGTTCTTGCAGCCGCGGAC-CAGGGAGGAGCTGATGTTCC------GGTTTCAGGGTCTTGCAGCCGCAGACCCGTGGAGGCGC------GGATGTTCCTGTTTGAGGGTTTTGTAGCCACAGACCCGGTTAGGTGCCAATGTTCTACATTGAAGGTCGTGCagccgcagacctggagaggagccgatg-------gtgtagtttgaggatcttgcagccaaagaccctgagaggcgc-cggtgtttcagtttgaggttcgtgcagccgaaaacccggggaggagccaatgtt
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr6                 43071 403 + 174439528 --------------------TTGAGGGTCGTGTCGCTGGAGACCCGCGGAGGAGCCGgtgttggtgtttctagttgaggTTTGGGGAGTTGGAGACCCGTGGAGGAGCCATTGTTGGTGTTTCTCGTTGACTTTTGTGGAGCTGGAGATATAGGGTGATgcgttgttttct--agtttgtggttTGCGGAGCTGGAGACCCGCGGAGGAGCtggttttcttgtttctgtttgaGGATCGTGGAGATGGAGACCTGCGGAGGAGCCCGTCTTGGTGTTTGTAGTTGAGGGTTT-----------------------------------------------TGGAGCTGGAGACTCGCAGAGGAACTGCagttggtgtttctagt-tgatGTTTGTGGAGCTGCAGATACAGGGTGGAgcgttgttttctagtttgtgggttatggagctggagaccagtggAGGAGCTGGAGTT
i papAnu2.chr6             C 0 I 11991
e calJac3.chr5              41955623 6840 + 159171411 I
e chlSab2.chr4              89551932 13243 -  91010382 I

a score=3018.000000
s hg38.chr3_KI270935v1_alt     16108 6 +    197351 ctagtt
s panTro4.chr3                644451 6 - 202329955 ctagtt
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199669796 6 + 202140232 CTAGTT
i ponAbe2.chr3             C 0 I 285
s nomLeu3.chr11            120779924 6 + 123690457 ccagtt
i nomLeu3.chr11            C 0 C 0
e calJac3.chr5              41955623 6840 + 159171411 I
e chlSab2.chr4              89551932 13243 -  91010382 I
e papAnu2.chr6                 43474 11991 + 174439528 I

a score=95257.000000
s hg38.chr3_KI270935v1_alt     16114 669 +    197351 tgagggtcatgcaggtgaagactcggggaggagctgatgttctagtttgaaggtcttgcagctgcagacctggagaggagctgatgttctagtttgaaggtcttgcagctgcagacctggagaggagctgatgttctagattgagggtcgtgcagctgaagactcggg-----------------------------------------------gaggagctgatgttctagattaagggtcatgcagctgaagactcagggaggagctgaggttctagtttgagggtcgtgcagctgaagactt------------------------------------------------gggaggagctgagattctagtttgagggtcgtgcagcagaagactcagggaggagctgatgttctagattgagggccctacagctgcagacctgaagaggtgctgatgttcgagattgagggtcgtgcagctgaatactcggagaggagctgatgttatagtttgagggccctacagctgaagacccggagagtatctgatcttcgagattgagggtcatgcagctgaagactccgggaggagctgagttgctaatttgagggtcttgcagctgctgacttggggaggagctgatgttctagtttgagggccctacagttggaaatctgtacaggagctgatgttctagtttgagggtcatgcaggtgaaaaatcggggaggagctgatattctagtttg----------------------------------------------agggccctgc
s panTro4.chr3                644457 716 - 202329955 tgagggtcatgcaggtgaagactcggggaggagctgatgttctagtttgagGGTCTTGCagctgcagacctggagaggagctgatgttgtagtttgatggtcttgcagctgcaaacctggagaggagctgatgttctagattgagggtcgtgcagctgaagactcggggaggagctgatgttctagattaagggtcatgcagctgaagactcagggaggagctgacgttctagtttgagggtcgtgcagctgaagactc-gggaggagctgagattctagtttgagggtcgtgcagcagaagactc-----------------------------------------------agggaggagctgatgttctagattgagggccctacagctgcagacctgaagaggagctgatgttcgagattgagggtcgtgcagctgaatactcagagaggagctgatgttatagtttgagggccctacagctgaagaccccgagagtatctgatcttcgagattgagggtcgtgcagctgaagactccgggaggagctgaggtggtaatttgagggtcttgcagctgctgacttggggaggagctgatgttctagtttgagggtcatgcaggtgaagaatcggggaggagctgatattctagtttgagGGCCCTGCAGCGAGAGATGCAGACAGGAGCTGATGTTGTAGTTTGAGGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------------------------------------------NNNNNNNNNN
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120779930 760 + 123690457 tgagggtagtgcagccgcagaccccgggaagagcagatattccagtttgagggtcgtgcagctgcattccaggggaggagctgatgttccagtttgagggtcgtgtacccgcagatccagggaagagctgatgttccagtttgagggtcgtgcaaacgcagaccaggg-----------------------------------------------gaggaggtgatgttccagtttgagggtcctgcagccgcagacccagggaggcgctgattttccaatttgagGGTCGTGCAGCCGCAGACCTCCGTGGGAGCTGATGTTCCGGTTTGAGGGTCTTGCATCCGCAGACCAGCGGAGGAGCTGGTGTTCCAGTTTGAGGGTCGTGCAGCCGCAGGCCCGGCGAGGAGCTGATCTGCT---TTGAGGGTCGTGCAGCCGCAGACCCGGGGAGGAGCTGATGTTCTGGTTTGAGGGTGGTGCAATCACGGACCCGGGGAGGAGCTGATGTTCCGGTTTGAAGGTCTTGCAGCCGCGGACCCGAGGAGGTGCTGATTTTCCGGTTTGAGGGTCTTGCAGCCGCGGACCTGGGGAGGAGCTGATGTTCCAGTTTGAGGGTCTTGCagccgcggacccggggaggagctgatgttccggtttgagggtcttgcagctgcggacccggggaggagctgatgttccggtttgacggtcttgcagccgcaaacccagggaggagctgatggtccagtttgagGGTCTTGTAGCCGTGGACTAGGGAGGAGCTGATGTTCTGGTTTCAGGGTCTTGC
i nomLeu3.chr11            C 0 C 0
e calJac3.chr5              41955623 6840 + 159171411 I
e chlSab2.chr4              89551932 13243 -  91010382 I
e papAnu2.chr6                 43474 11991 + 174439528 I
e ponAbe2.chr3             199669802 285 + 202140232 I

a score=4559.000000
s hg38.chr3_KI270935v1_alt     16783 130 +    197351 agctagagatgcagacaggagctga------tgttgtagtttgagggtcgtacagctgaagattcagggaggagc--tgctcgtgtatttttagggtcatgcagctgcagacccggagaggagc--tgatgttaaagatt
s panTro4.chr3                645173 115 - 202329955 NNNNNNNNNNNNNNNNNNNNNNNNN------NNNNNNNNNNNNNNNNNNNNNNNN---------------GGAGC--TGACATtctaatttgaggtccctacaggtggacacccggagaggagc--tgatgttaaagatt
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120780690 130 + 123690457 AGCCGCAGAGCCGTGGAGGCGCGGA------TGTTCTTGTTTGAGGGTTTTGCAGCCGCAGACCCGGGGAGGTGC--CAGTGTTCTACATTGAGGGTCGTGCagccgcagacctggagaggagc--cgatgttgtagttt
i nomLeu3.chr11            C 0 C 0
s calJac3.chr5              41962463 140 + 159171411 aactggaggtccagggaggagctggtgctgctgttgcagtctgagggtcgagcagctggagacccagggaggagcggtgttgctctagtttgaggttcctggagcaggagactaacagaggagtggtattgttttagttt
i calJac3.chr5             I 6840 C 0
e chlSab2.chr4              89551932 13243 -  91010382 I
e papAnu2.chr6                 43474 11991 + 174439528 I
e ponAbe2.chr3             199669802 285 + 202140232 I

a score=156998.000000
s hg38.chr3_KI270935v1_alt     16913 426 +    197351 gagggtcatgcagctgaagactctgggaggagc--tgacgttctaatttgaggtccctacaggtggacaccgagagagga---------gcttatgttctagattgagggtcatgcagcagaagactcggggaagagctgaggttgt---------agtttgagggtcgtgcagct-----------------------------------------------ggagaaccagacaggagctga----tgttgt-----agattgagcgtcgtgcagctgaagactcagggaggagctgatgttg----ttcgttttgagggtgtttcagctggagactcagggagga-----gctgacgttctagattgagggtcttgcagctgcagacctgtagaggaactgatgt--------tctagattgagggtcacgcagctgaagacttggggagaagctga---tg------ttctaacttgagggtcgtgcagctgaggactcggggaggagCTGAT-------GTTGACAGCTG
s panTro4.chr3                645288 426 - 202329955 gagggtcatgcagctgaagactctgggaggagc--tgacattctaatttgaggtccctacaggtggacacccagagagga---------gcttatgttctagattgagggtcatgcagcagaagactcggggaagagctgaggttgt---------agtttgagggtcgtgcagct-----------------------------------------------ggagaaccagacaggagctga----tgttct-----agattgagcgtcgtgcagctgaagactcggggaggagctgatgttg----ttcgttttgagggtctttcagctggagactcagggagga-----gctgacgttctagattgagggtcttgcagctgcagacctggagaggaactgatgt--------tctagattgagggtgacgcagctgaaaacttggggagaagctga---tg------ttctaacttgagggtcgtgcagctgaggactcggggaggagCTGAT-------GTTGATGGCTG
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120780820 475 + 123690457 gaggatcttgcagccaaagaccctgagaggcgc--cggtgtttcagtttgaggtccgtgcagctgaaaacgcggggagga---------gccaatgttccagtttgagggtagtgcaggcgcagacccggggaagagcagatattcc---------agtttgagggtcgtgcagctgcattccaggggaggagctgatgttccagtttgagggtcgtgtacccgcagatccatggaagagctga----tgttcc-----agtttgagggtcgtgcaaccgcagaccaggggaggagctgatgt------tccagtttgagggtcgtgtacccgcagatccgggaaaga-----tctgatgttccagtttgagggtcgtgcagccacattcccggagaggagctgatga--------tccagtttgagggtcgtgcaaccgcagacacagggaagagctga---tg------ttccagtttgagggtcgtgcagccgcaggCCCGGCGAGGAGCTGATCTGC---TTTGAGGGTCG
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr6                 55465 405 + 174439528 GAGGGTTGTGGGGCTGAAGACCCGGACAGGAGC--TGGTGCT-----------------------------------------------ACCACTATTCAAATCTGAGGATGGTGGAGCTGGAGCCTTGGGGAGGAGCCGACACTGC---CTTTTAAGTCTGAGAGTCGTTGAGCT-----------------------------------------------GGAGGTCCACGGAGGAGCTGG----TGCTGCCACTGATGTCTTAGGTTGTGGAGCTGAAGAC-AGTGAAGGAGCCGGTGTGGCTATTCCTCTgtgagggtcgtggagctggagatCCAGGGGGAG-----A--GGTGATCTAGTTTGAGGTTCATGCAGCTGCAGACCCAGAGAGGAGCTGGCGTTTC-----TTTAGTTTGAGGGTTGCGCAGCTGTAGAACCCAGGAGGAGCTGGCATTT------TTCTAGTATTAGTGTCCTGCAACT--------GGAGAGGAGCTCATGTTCCAGTTTGAGGGCCG
i papAnu2.chr6             I 11991 C 0
s calJac3.chr5              41962603 469 + 159171411 gaaggtctaggagctggagacccaaggaggagcagtgttgttctagtttggaggttgtccagcttgagatctagggaggagCTGGTGCTGCTGTTGTTTAAGGCCGAGGGtcgtggagctgatgatccaggaagaagcaagtgtttttgttgttcaagtctgagggttgtggagct-----------------------------------------------ggagacccagggaggaactgatttttattct-----agtttgagggttttggaactggagccccagggagtagCCAGTGCTGCCACTGATGTCTTAGAGttgtggagctgaagatccaggaggagctggtgctgatgttctagtttaaggattgtgcagctgcagacccggacaggagccgttgctactgctgtcaaatctgagggtcatagagctggagccttgcagagaagccgg---tgcttcatctcaagtctgaGAGTTGTTAAGCTGGAGATTTAGGGAGGTGCCGGT-----------GCAGCTG
i calJac3.chr5             C 0 I 191
e chlSab2.chr4              89551932 13243 -  91010382 I
e ponAbe2.chr3             199669802 285 + 202140232 I

a score=21958.000000
s hg38.chr3_KI270935v1_alt     17339 46 +    197351 TGCAGCTGGAGATCCGGCGGGGAGCTGATGTTCCGGTTTGAGGGCC
s panTro4.chr3                645714 46 - 202329955 TGCAGCTGGAGATCCGGCGGGGAGCTGATGTTCCGGTTTGAGGGCC
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120781295 46 + 123690457 TGCAGCCGCAGACCCGGGGAGGAGCTGATGTTCCGGTTTGAGGGTC
i nomLeu3.chr11            C 0 I 1841
s papAnu2.chr6                 55870 46 + 174439528 TGCAGCTGGAGACCTGAGGGGGAGCTGATGTTCCAGTTTGAGGGCT
i papAnu2.chr6             C 0 I 18
e calJac3.chr5              41963072 191 + 159171411 I
e chlSab2.chr4              89551932 13243 -  91010382 I
e ponAbe2.chr3             199669802 285 + 202140232 I

a score=20875.000000
s hg38.chr3_KI270935v1_alt     17385 54 +    197351 GGGGAGCTGATGTTCCAGTTTGATGG-CCGTGCACCTGGAGACCCAGGGAGGAAC
s panTro4.chr3                645760 54 - 202329955 GGGGAGCTGATGTTCCAGTTTGATGG-CCGTGCACCTGGAGACCCAGGGAGGAAC
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120783182 54 + 123690457 GAGGAGCTGATGTTCCGGTTTGACGG-TCTTGCAGCCGCAAACCCAGGGAGGAGC
i nomLeu3.chr11            I 1841 I 368
s papAnu2.chr6                 55934 55 + 174439528 GGGGAGCCGATGTTCCAGTTTTAAGGTCCGTGCAGCTGGACACCCTACGGGGAGC
i papAnu2.chr6             I 18 I 821
e calJac3.chr5              41963072 191 + 159171411 I
e chlSab2.chr4              89551932 13243 -  91010382 I
e ponAbe2.chr3             199669802 285 + 202140232 I

a score=10728.000000
s hg38.chr3_KI270935v1_alt     17439 119 +    197351 Atcaaactggaacatctgctccccgcagtgcctccagctgcatggctcccaaactggaacatcggttcccacccgggtctccagctgcacggccctcaaactgcaacatcggctatccc
s panTro4.chr3                645814 119 - 202329955 ATCAAACTGGAACATCTCCTTCCCGCAGTGCCTCCAGCTGCATGGCTCCCAAACTGGAACATCAGTTCCCACCCGGGTCTCCAGCTGCACGGCCCTCAAACTGCAACATCAGCTACCCC
i panTro4.chr3             C 0 M 1154
e calJac3.chr5              41963072 191 + 159171411 I
e chlSab2.chr4              89551932 13243 -  91010382 I
e papAnu2.chr6                 55989 821 + 174439528 I
e ponAbe2.chr3             199669802 285 + 202140232 I
e nomLeu3.chr11            120783236 368 + 123690457 I

a score=0.000000
s hg38.chr3_KI270935v1_alt     17558 465 +    197351 cgagtctccagctgcacggccctcaaactggaacatcagcttctccccaagtctttcagctgaatggccctcaaactggaacttcagctccccaccgggtatccagctgcatggccctcaaactggaagttcagctccccaccgggtctccagctgcacggccctcagactggaacatcagctccccactgggtctccagctgcacggccctcagactggaacatcagctccccaccgggtctccagcttcacggccctcaaactggaacttcagctccccaacgggtctccagcttcacggccctcaaactggaacttcagctccccaccgggtatccagctgcatggccctcaaaccggaagttcggctcccccgcgggtctccagctgcacggccctcagactggaacatcagctccccgccgggtctccagctgcacggccctcaaactggaaTAGTTTGA
e calJac3.chr5              41963072 191 + 159171411 I
e chlSab2.chr4              89551932 13243 -  91010382 I
e papAnu2.chr6                 55989 821 + 174439528 I
e ponAbe2.chr3             199669802 285 + 202140232 I
e nomLeu3.chr11            120783236 368 + 123690457 I
e panTro4.chr3                645933 1154 - 202329955 M

a score=459.000000
s hg38.chr3_KI270935v1_alt     18023 7 +    197351 ACTCAGC
s papAnu2.chr6                 56810 7 + 174439528 ACTCATC
i papAnu2.chr6             I 821 C 0
e calJac3.chr5              41963072 191 + 159171411 I
e chlSab2.chr4              89551932 13243 -  91010382 I
e ponAbe2.chr3             199669802 285 + 202140232 I
e nomLeu3.chr11            120783236 368 + 123690457 I
e panTro4.chr3                645933 1154 - 202329955 M

a score=51807.000000
s hg38.chr3_KI270935v1_alt     18030 337 +    197351 GGGGAGCTGATGTTCCAGTTTGAGGGCTGTGCagctggagacccggcagggagctgatgttccggttgtagggctgtgcagccggagacccagggggaagctgatgttccagttgtagggccgtgctactggagacccaggggtggagctgatgttccagtttgagggccatgcagttgatgacccggcggggagctgatgttcaagtttgaggtctgtgcagctggagacccgcgggg-gagctgatgttccagtttgatggccatgcagctggaggctctgatgggagctgatgttgcaatttgagggccatgcagctggagacctggcggggagg
s nomLeu3.chr11            120783604 336 + 123690457 gaggagctgatgttccagtttgagggtcgtgtacccgcagatccatggaagagctgatgttccagtttgagGGTCGTGCAACCGCAGACCAGGGGAGGAGCTGATGTTCCGGTTTGGGGGTCTTGCAGCCACTGACCC-GGGGAGGAGCTTGTGTTCCGGTTTGGGGGTCTTGCAATCACGGACCCGGGGAGGAGCTGATGTTCCGGTTTGAGGGTGGTGCAATCACGGACCCGGGGAG-GAGCTGATGTTCCGGTTTGAGGGTCTTGCAGCCGCGGACCTGGGGAGGAGCTGATGTTCCAGTTTGAGGGTCTTGCAGCCGTGGATCTGGGGAGGAGC
i nomLeu3.chr11            I 368 C 0
s papAnu2.chr6                 56817 337 + 174439528 AGGAAGCTGATGTTCCAATTGGAGGGCCGGGGAGCTGGACACACAGGGGTAAGCTAATGCTCCAGTTTGAGGGCAGTGCTGCTGTAGACCCAGTGGGGAGCTGATGTTCCAGTTTGAGGGCTGTGCAGGTGGACACAG-GGCAGAGAGCTGATGTTCCAGTTTGAGCACCATGCAGCTGGAGACTCAGCGGGGAGCTGATGTTGCAGTTAGAGGTCCGTGCAGCTGGACACATGGCAAGAGAGCTGATGTTCTAGTTTGAGAACCGTGCAGCTGGAGACCAGGAGGGGAGCTGATGTTCCAGTTTGAGGGCCGTGCAGCTGGAGACCAGGAGGGGAGC
i papAnu2.chr6             C 0 C 0
e calJac3.chr5              41963072 191 + 159171411 I
e chlSab2.chr4              89551932 13243 -  91010382 I
e ponAbe2.chr3             199669802 285 + 202140232 I
e panTro4.chr3                645933 1154 - 202329955 M

a score=54126.000000
s hg38.chr3_KI270935v1_alt     18367 197 +    197351 tgatgttccagtttgagggccatgcagctggtgacctggcagggagctgatgttccagtttgaggaccgtgctcctggagacctag-cggggagctgatgttccagtttaagg-ccatgcagctgtatgcccgg-ggggaactgatgttgcagt-----------------------------------------------ttgagGGCCGTGCATCGGGAGACCCGGTGGGGAGCCAGTGTTGCAG
s panTro4.chr3                647089 200 - 202329955 TGATATTCCAGTTTGAGGGCCGTGCagctggagacccggcagggagctgatgttccggttgtagggctgtgcatctggagacccgggcggggagctgatgttccagtttaagggccatgcagctgtatacccggtggggagttgatgttccagt-----------------------------------------------ttgagGGCCGTGCATCTGGAGACCCGGTGGGGAGCCAGTGTTGCAG
i panTro4.chr3             M 1154 C 0
s nomLeu3.chr11            120783940 245 + 123690457 TGATGTTCCGGTTTGACGGTCTTGCAGCTGCGGACCCGGGGTGGAGCTGATGGTCCGGTTTGAGCGTCTTGTAGCCGCGGACCAGA--GAGGAGCTGATGTTCTGGTTTCAGGGTCTTGCAGCCGCAGACCCGTGGAGGCGCGGATGTTCCTGTTTGAGGGTTTTGCAGCCGCAGACCTGGGGAGGTGCCAATGTTCTACATTGAGGGTCGTGCAGCCGCACACCTGGAGAGGAGCCAATGTTGTAG
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr6                 57154 179 + 174439528 TGATGTTCCAGTTTGAGGGCCGTGCAGCTGGAGAACCGTGGGGGAGTTGATGTTCCAGTTTGAGGGCCGTGCAACTGGAGATTCAG-GGTGGTGCCGATGTTCCACTTTGAGGGCGATGCAGCTGGAGACCCGG-TGGGAGCTGATGTTCCAGT-----------------------------------------------TTCAGGGCC-------------------CAGAAGCTGATGTTCCAG
i papAnu2.chr6             C 0 C 0
e calJac3.chr5              41963072 191 + 159171411 I
e chlSab2.chr4              89551932 13243 -  91010382 I
e ponAbe2.chr3             199669802 285 + 202140232 I

a score=-293.000000
s hg38.chr3_KI270935v1_alt     18564 1 +    197351 G
s panTro4.chr3                647289 1 - 202329955 G
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120784185 1 + 123690457 T
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr6                 57333 1 + 174439528 T
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89565175 1 -  91010382 G
i chlSab2.chr4             I 13243 C 0
e calJac3.chr5              41963072 191 + 159171411 I
e ponAbe2.chr3             199669802 285 + 202140232 I

a score=23997.000000
s hg38.chr3_KI270935v1_alt     18565 24 +    197351 TTGAGGGCCGTGCAGCTGGAGACC
s panTro4.chr3                647290 24 - 202329955 TTGAGGGCCGTGGAGCTGGAGACC
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199670087 24 + 202140232 TTGAGGGCTGTGCATCTGGAGACC
i ponAbe2.chr3             I 285 C 0
s nomLeu3.chr11            120784186 24 + 123690457 TTGAGGATCTTGCCGCCGCAGACC
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr6                 57334 24 + 174439528 TTAAGGGCCATGCAGCTGGAGACA
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89565176 24 -  91010382 TTGAGGGCCCTGCAGCTGGAGACC
i chlSab2.chr4             C 0 C 0
e calJac3.chr5              41963072 191 + 159171411 I

a score=1314.000000
s hg38.chr3_KI270935v1_alt     18589 1 +    197351 C
s panTro4.chr3                647314 1 - 202329955 C
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199670111 1 + 202140232 T
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120784210 1 + 123690457 C
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr6                 57358 1 + 174439528 C
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89565200 1 -  91010382 C
i chlSab2.chr4             C 0 I 881
s calJac3.chr5              41963263 1 + 159171411 C
i calJac3.chr5             I 191 C 0

a score=178336.000000
s hg38.chr3_KI270935v1_alt     18590 285 +    197351 TGTGGGGAGCTGATGTTC----------------------------------------------------------------------------------------------TTGTTTGAGAGCCGTGCagctggagaccctgtggg--gagctga---tgtt------cctgtttgagagctgtgcagctggagatctggtggggagctga------tgttccagtatgagggccgtgcggctggagacctggtggggagctga------tgttc-cagtttgagggccgtgcacctggagacccggcagggagctga------tgttccagtttgagggctgtgcagctggataccgggggtggagctga------tgttccagtttgagggccatgcatctggagacccagt
s panTro4.chr3                647315 377 - 202329955 GGCGGGGAGCTGATGTTCcaggttgacacg-gtatagctggag-acccggggggaactgatgttgcagtttgagggccgtgcatctggagacccggtggggagccagtgttgcaggttgagggccgtgcagctggagaccctgtggg--gagctga---tgtt------cctgtttgagAGCCGTGCagctggagatctggtggggagctga------tgttccagtatgagggccgtgcagctggagacctggtggggagctga------tgttc-cagtttgagggccgtgcagctggatacccggcagggagctga------tgttccagtttgagggctgtgcacctggagacctggcagggagttga------tgttctagtttgagggccgtgcagctggagacccagt
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199670112 286 + 202140232 GGTGGGGAGCCAGTGTTC----------------------------------------------------------------------------------------------CAAGTTGAGGGCCATGGAGCTGAAGACCCGGTGGGGTGAGCTGA---TGTT------CCAGGTTGAGGGCCGTGCTGCTGGAGACCCAGCGGGGAGCTGA------TGTTGCAGTTTGA-GGTGGTGCAGCTGGACAACGGGGGGGGAACTGA------TGTTG-CAATTTGAGGGCCGTGCAGCTGGAGACCCTGTGGGGAGCTGA------TGTTCCAGTTTGAGGGCTATGCATCTGGAGACCTGGTGGGGAGCCGA------TGTTTCAGTTTGAGGGCCGTGCCTctggatacccgga
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120784211 332 + 123690457 TGAGAGGCGCCAGTGTTCCAGTTTGAGGTTCATGCAGCCGAAATCCCCGGGTGGAAGCGATgttc-----------------------------------------------cattttgagggtcgtgcagccgcagacccggggaa--gagctga---tgtt------ccagtttcaggatcgtgtagctgcagacctggggaagagctga------tgttccagtttcagggtcgttcagccacagaccaggggaggagctga------tgttc-cagtctgagggccgtgcagcggcagactcggggaggcgctga------tgttccaatttcagGGTCGTGCagccgcagacccggggaggtgctga------tgttccggtttgagggtcttgcagccacggacccggg
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr6                 57359 289 + 174439528 GGCGGGGAGCTCATATTC----------------------------------------------------------------------------------------------CAATTTGAGGGTCGTGCAGCTGGAGAACTAGGGAG--GAGCTGatgttgtt------ttcatttgagaGCCGTGGAGCTGGACAGCTGGAGAGGAACTGG------TGTTCTAGTTTGATGGTTGTAGAGCTGGGGATGCAGGCAGGAGCTGT------TCTTTATAGTTTGAGGGCCATGGAGCTGAAGACCCTGGGAGGAGC---------TGTTCTAGCTTGAGGGTCGTGCAGCTGGACACCCTAGGAGGGGCTGA---TGTTGTTGCAGTTTGAGTATTGTGCAGCTGGAGATCTAGT
i papAnu2.chr6             C 0 I 295
s calJac3.chr5              41963264 315 + 159171411 AGGGAGTAGCTGGTGCTGCTGTTC----------------------------------------------------------------------------------------AAATTTGAGGGTCAG------GGAGACCTGGGGAG--GAGCCAG---TGATGCCTGCCACGTCTGAGAGTCACTGAGCTGGAGATGCAGGGAGGAGCTGGTGCCGCTGTTGTAGTTTGAGGATTGTGAATCTGGAGACCCGGGGAGGAGCTGGTGCCGCTGTTG-tagtttgaggattgtgaatctggagacccggggaggagctggtgccgctgttgtagtttgaggattgtgaatctggagatccagggaggagctggtgctgctgttgtagtttgagggtcatggaggtgaagatccagg
i calJac3.chr5             C 0 C 0
e chlSab2.chr4              89565201 881 -  91010382 I

a score=24546.000000
s hg38.chr3_KI270935v1_alt     18875 39 +    197351 tggtagccagtgttgcaggt------tgagGGCTGTGGAGTTGGA
s panTro4.chr3                647692 39 - 202329955 gggtagccagtgttgcaggt------tgagggctgtggagctgga
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199670398 39 + 202140232 ggggagctgatgttgcaggt------tgagggccttggagctgga
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120784543 39 + 123690457 gaggagctgatgttccggtt------tgagggtcttgcagccacg
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr6                 57943 38 + 174439528 -CGGTGGTGGTGTTTCTCGT------TGAGGATTGTGGAGCCAGA
i papAnu2.chr6             I 295 C 0
s calJac3.chr5              41963579 45 + 159171411 gaggagccggtgctgctgtttaagtctgaggatcgtggagctAAA
i calJac3.chr5             C 0 T 7606
e chlSab2.chr4              89565201 881 -  91010382 I

a score=35868.000000
s hg38.chr3_KI270935v1_alt     18914  80 +    197351 GACCCGGGTTGGGG--------------------------------------------------GGAGCTGATGTTCCAGGTTGAGGGCCATGCTgctggagacccagcggggagctgatgttgcagttt
s panTro4.chr3                647731  80 - 202329955 gacccgggttgggg--------------------------------------------------ggagctgatgttccaggttgagggccgtgctgctggagacccagcggggaactgatgttgcagttt
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199670437  77 + 202140232 gacctgggc---gg--------------------------------------------------ggatctgatgttacagtttgagggccatgaagctggagacccggtggggtactgatgttgcagttt
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120784582  76 + 123690457 gacccggg----ga--------------------------------------------------ggagctgatgttccagtttgagggtcttgcagccgcaaacccagggaggagctgatgttccagttt
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr6                 57981 129 + 174439528 GATACGGGGTGGAGCGTTGTTTTGTAGTTTGtgggtcatggagctggagaccagtggaggagctggagttggtgtttctagttgaggGTCGTG-AGCTGGAGACCCATGCAGGAGCTGgagttggtgttt
i papAnu2.chr6             C 0 I 573
e calJac3.chr5              41963624 7606 + 159171411 T
e chlSab2.chr4              89565201 881 -  91010382 I

a score=7355.000000
s hg38.chr3_KI270935v1_alt     18994 27 +    197351 ga-gGCGGTGCAGCTGGACATGCAGGGG
s panTro4.chr3                647811 27 - 202329955 ga-ggcggtgcagctggagacccagggg
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199670514 27 + 202140232 gagggccatgcagctggatac-ctggtg
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120784658 27 + 123690457 gagggtcttgcagccgtggac-caggga
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr6                 58683 27 + 174439528 -AGGGCTGTGGAGCTAGAGATACAAGGT
i papAnu2.chr6             I 573 I 2115
e calJac3.chr5              41963624 7606 + 159171411 T
e chlSab2.chr4              89565201 881 -  91010382 I

a score=24788.000000
s hg38.chr3_KI270935v1_alt     19021 42 +    197351 GGAAGTGATGTTGCAATTTGAGGGCTGTGCagctggagaccc
s panTro4.chr3                647838 42 - 202329955 ggaactgatgttgcaatttgagggctgtgcagctggagaccc
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199670541 42 + 202140232 ggacctgatgttgcagtttgagggctgtgcacctggagcccg
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120784685 42 + 123690457 ggagctgatgttccagtttcagggTCTTGCAGCCGCAGACCT
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr6                 60825 42 + 174439528 ggagttggtgtttctagttgagggtcgtggagctggagaccc
i papAnu2.chr6             I 2115 I 1341
e calJac3.chr5              41963624 7606 + 159171411 T
e chlSab2.chr4              89565201 881 -  91010382 I

a score=9557.000000
s hg38.chr3_KI270935v1_alt     19063 43 +    197351 -------tgtggggagctgatgttcctgtttgagggtctcggagctg-------------------atg
s panTro4.chr3                647880 43 - 202329955 -------tgtggggagctgatgttcctgtttgagggcctgggagctg-------------------atg
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199670583 27 + 202140232 -------ggggtggagctgatattccagtttgag-----------------------------------
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120784727 62 + 123690457 -------GTGGAGGCGCGGATGTTCCTGTTTGAGGGTTTTGTagctgcagacccagagaagtgccaatg
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr6                 62208 50 + 174439528 tgTGGAGGAGCTGGAGTTGGTGTTTTTagttgagggtcgtggagctg-------------------gag
i papAnu2.chr6             I 1341 I 2069
e calJac3.chr5              41963624 7606 + 159171411 T
e chlSab2.chr4              89565201 881 -  91010382 I

a score=13704.000000
s hg38.chr3_KI270935v1_alt     19106 41 +    197351 ttcca-gtttaaggccatgcagctggagacccggtggggagc
s panTro4.chr3                647923 41 - 202329955 tgcca-gtttaaggcaatgcagctggagacccggtggggagc
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199670610 29 + 202140232 ------------ggctgtgcagctggagacctgat-gagagc
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120784789 42 + 123690457 ttctacattgagggtcgtgcagccgcagaactggagaggagc
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr6                 64327 42 + 174439528 TTTTAGTTTGTGagtcatggagctggagacctgTGGAGGAGC
i papAnu2.chr6             I 2069 I 2415
e calJac3.chr5              41963624 7606 + 159171411 T
e chlSab2.chr4              89565201 881 -  91010382 I

a score=11774.000000
s hg38.chr3_KI270935v1_alt     19147 19 +    197351 tgatgttccagtttgaggg
s panTro4.chr3                647964 19 - 202329955 cgatgttccagtttgaggg
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199670639 19 + 202140232 tgatgttccagtttgcagg
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120784831 19 + 123690457 tgatgttgtagtttgagga
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr6                 66784 19 + 174439528 TGGTGTTTCTGGTTGAGGG
i papAnu2.chr6             I 2415 I 413
e calJac3.chr5              41963624 7606 + 159171411 T
e chlSab2.chr4              89565201 881 -  91010382 I

a score=8982.000000
s hg38.chr3_KI270935v1_alt     19166 18 +    197351 ccatgcatctggagaccc
s panTro4.chr3                647983 18 - 202329955 ccgtgcatctggagaccc
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199670658 18 + 202140232 ccgtgcatctggaggcct
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120784850 18 + 123690457 tcttgcagccgcagaccc
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr6                 67216 18 + 174439528 TTGTGGAGCTGGAGATAC
i papAnu2.chr6             I 413 I 1880
e calJac3.chr5              41963624 7606 + 159171411 T
e chlSab2.chr4              89565201 881 -  91010382 I

a score=6376.000000
s hg38.chr3_KI270935v1_alt     19184 18 +    197351 ggtggggagctgatgttg
s panTro4.chr3                648001 18 - 202329955 ggtggggagctgatgttg
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199670676 18 + 202140232 ggcagggagctgatgttc
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120784868 18 + 123690457 tgagaggagccggtgttt
i nomLeu3.chr11            C 0 C 0
e calJac3.chr5              41963624 7606 + 159171411 T
e chlSab2.chr4              89565201 881 -  91010382 I
e papAnu2.chr6                 67234 1880 + 174439528 I

a score=13087.000000
s hg38.chr3_KI270935v1_alt     19202 58 +    197351 caggttgagggccattcatctggagaccc------agtggggagctgatgttgcaggttgaggg
s panTro4.chr3                648019 12 - 202329955 caggttgagggc----------------------------------------------------
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199670694 58 + 202140232 cagtttgagggccgtgcatctggagacct------ggtggggagctgatgttgcaggttgaggg
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120784886 58 + 123690457 cagtttgaggttcgtgcagccgaaaaccc------ggggagaagccgatgttccagtttgaggg
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr6                 69114 64 + 174439528 ctagttgagggtcgtggagctggagacccatgGAAGAGGTGGAGTTGGTGTTCCTAGTTGAGGG
i papAnu2.chr6             I 1880 I 1060
e calJac3.chr5              41963624 7606 + 159171411 T
e chlSab2.chr4              89565201 881 -  91010382 I

a score=12639.000000
s hg38.chr3_KI270935v1_alt     19260 30 +    197351 ctgtgcacctggagccccggg-gtggagctg
s panTro4.chr3                648031 29 - 202329955 -tgtgcacctggagccccggg-gtggagctg
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199670752 31 + 202140232 ccgtggagctgcaggcctgggcggggggcta
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120784944 30 + 123690457 tagtgcagccgcagacccggg-gaagagcag
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr6                 70238 30 + 174439528 tTGCGAAGCTGGAGTCCTGCG-GTGGAGCCG
i papAnu2.chr6             I 1060 I 2707
e calJac3.chr5              41963624 7606 + 159171411 T
e chlSab2.chr4              89565201 881 -  91010382 I

a score=25963.000000
s hg38.chr3_KI270935v1_alt     19290 45 +    197351 atattccagtttgagggccgtgcagctggcaatctggtggggagc
s panTro4.chr3                648060 45 - 202329955 atattccagtttgagggccgtgcagctggcgatctggtggggagc
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199670783 45 + 202140232 atgttccagtttgagggccatgaagctggagacccagggtggaac
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120784974 45 + 123690457 atattccagtttgagggtcgtgcagccgcattccaggggaggagc
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr6                 72975 45 + 174439528 gttttctagtttgtgggtcgtggagctggagacctgCAGAGGAGC
i papAnu2.chr6             I 2707 I 1441
e calJac3.chr5              41963624 7606 + 159171411 T
e chlSab2.chr4              89565201 881 -  91010382 I

a score=214785.000000
s hg38.chr3_KI270935v1_alt     19335 436 +    197351 tgatgttccagtttgagggccatgcagctggagaccgggcagggagctcatgttccagtttgcaggcagtgcagctggagacccggcggggagctgatgttccagtt---------tgaggtccgtgcagctggagatctggtggggagctgat------gttccagtttgag-------------------------------------------------ggccctgcagctggagacccgtgg-ggatctgatgttcc------agtttgagggtggtgctgctggcgacccaggcgggagctgatg---ttctagttttagggccctacagctggagacccggggaggagctgacatt---ccctttcgagggctgtgcaggtggagacctggggaggaactga------tgttgttctaatttgagtgtggtgcagctgGAGATCCAGGGATGAGATGGCCCTGCGGTTCAAATATGAGGGTCCCGGAGCTGGACTCTACGTGAGGAACCAATG
s panTro4.chr3                648105 436 - 202329955 tgatgttccagtttgagggccatgcagctggagacccggcagggaggtcatgtttcagtttgcaggcagtgcagctggagacccggcggggagctgatgttccagtt---------tgaggtccgtgtagctggagatctggtggggagctgat------gttccagtttgag-------------------------------------------------ggccctgcagctggagacccgtgg-ggatctgatgttcc------agtttgagGGTGGTGCTgctggcgacccaggcgggagctgatg---ttctatttttagggccctgcagctggagacctggggaggagctgacgtt---cccgttcgagggctgtgcaggtggagacctggggaggagctga------tgttgttctaatttgagtgtggtgcagctgGAGGTCCAGGGATGAAATGGTCCTGCGGTTCAAATATGAGGGTCCCGGAGCTGGACTCTACGTGAGGAACCAATG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199670828 436 + 202140232 tgatgttgcagtttgagggacatgcagctggATATCTGGCTGGGAGCTGAAGTTGCAGTTTGAGGGCTGTGCACCTGGAGCCCCGGGGTGGAGCTGATATTCCAGAT---------TGAGGGCCGTGTAGCTGGAAATCTGGTAGGGAACTGTT------GTTCCAGTTTAAG-------------------------------------------------GGCCCTGCATCTGGAGACCCGTGG-GGATCTGATGTTCC------AGTTTGAGGGTGGTGCAGGTGGCGACCCGGGCGGGAGCTGATG---TTCTAGTTTTAGGGCCATGCAGCTGGAGACCCGGGGAGGAGCTGACATT---CACGTTCGACGTCTCTGCAGGTGGAGACCTGGGGAGGAGCTGA------TGTTGTTCTAATTTGAGTGTGGTGCAGCTGGAGATCCAGGGATGAGATGTTCCTGCAGTTCAAATATGAGGGTCCCGGAGCTGGAATCTACATGAGGAGCCAATG
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120785019 421 + 123690457 tgatgttccagtttgagggtcgtgcagccacagacccgggtaagagctgatgttccggtttgagGGTGGTGCAGCCATGGACCCGAGGAGGAGCTTCTGTTCTGGTT---------TCTGGGTCTTGCAGCCACGGATCCAGGGAGGAGCTCAT------GTTCTGGTTTGAG-------------------------------------------------GATGATGCAGCCGCTGACCGGTGGAGGAGCTGATATTCC------GGTTTGAGGGTCTTGCATCTGCGgacccagggaggagctgaag---ttccagtttgagtgtcttgcagccgcagacccagggaggagctgatgtt---ccggattgGGGGTCTTGCAGCCGCAGATCCGGGGAGGAGCTGA---------TGTTCCCGTTTTGGAGTATTGCAGCCGCAGACCTTGGGAGGAGCTGAT------GTTCTGCTTTGAGGGTCTCGCagctgcagacca-gggaggag------
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr6                 74461 518 + 174439528 TGTTGTTCTAGTTTGTGGGCCCTGGAGCTGGTGACCTGGGGAAGAGCTGATGTTGTAG-TTGAGGGTCGTGTAGCTGGAGATGCAGGGAGGAGCTGGTTCTTCTGTTGTGTAAATCTGAAGGTCGTCGAGCTGGAGATCCACGGAAGAGCTAGTGCTGAGGTTCAAGTCTGAGAGGCTCGGAGCTTGAGCCCCTGGGTGGAGCTGGAGCTGCCACTGTCTTAGGTTGTAAAGCTGGAGACCTGAGGAGGAGCTGGTGTTGCTTTTGTAGTGTGAGGtttgtggagctggagacccagggaggagctggtGTGTTTCTAGTTGGATTGTCATGCAGTTGGCGACCCGGGGATGAGCTGATGTTGTCCTAGTTTGAGTGTCGTGGAGCTAGAGACCCACGGATgagctggtgctgctgctgtTTAAATCTGAGGGTGGTGGAGCTGGAGATCCGGGGAAGAGCTGGTGCTGCGGTTCAAGTCTGAGGCTGTCAGAGCTGGAGCCTCCAGGAAGAGTAGGTA
i papAnu2.chr6             I 1441 C 0
e calJac3.chr5              41963624 7606 + 159171411 T
e chlSab2.chr4              89565201 881 -  91010382 I

a score=20030.000000
s hg38.chr3_KI270935v1_alt     19771 22 +    197351 CTGCCTCTGATGTCTTAGGTTG
s panTro4.chr3                648541 22 - 202329955 CTGCCTCTGATGTCTTAGGTTG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199671264 22 + 202140232 CTGCCTCTGATGTCTTAGGTTG
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120785440 16 + 123690457 ------ctgatattcaggtttg
i nomLeu3.chr11            C 0 I 142
s papAnu2.chr6                 74979 22 + 174439528 CTGCCACTGATGTCTTAGGTTT
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89566082 22 -  91010382 CTGCCACTGATGTCTTAGGTTT
i chlSab2.chr4             I 881 C 0
e calJac3.chr5              41963624 7606 + 159171411 T

a score=11460.000000
s hg38.chr3_KI270935v1_alt     19793 10 +    197351 TGGAGCTGGA
s panTro4.chr3                648563 10 - 202329955 TGGAGCTGGA
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199671286 10 + 202140232 TGGAGCTGGA
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120785598 10 + 123690457 tgaagccgcg
i nomLeu3.chr11            I 142 C 0
s papAnu2.chr6                 75001 10 + 174439528 TGGAGCTGGA
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89566104 10 -  91010382 TGGAGCTGGA
i chlSab2.chr4             C 0 I 2264
e calJac3.chr5              41963624 7606 + 159171411 T

a score=4707.000000
s hg38.chr3_KI270935v1_alt     19803 9 +    197351 AACTCGCGG
s panTro4.chr3                648573 9 - 202329955 AACTCACGG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199671296 9 + 202140232 AACTCGTGG
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120785608 9 + 123690457 gacccgcgg
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr6                 75011 9 + 174439528 GACCTAAGG
i papAnu2.chr6             C 0 I 5
e calJac3.chr5              41963624 7606 + 159171411 T
e chlSab2.chr4              89566114 2264 -  91010382 I

a score=21941.000000
s hg38.chr3_KI270935v1_alt     19812 33 +    197351 AGGAGCTGGTATTGGTGTTTCTAGTTGAGGGTC
s panTro4.chr3                648582 33 - 202329955 AGGAGCTGGTATTGGTGTTTCTAGTTGAGGGTC
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199671305 33 + 202140232 AGGAGCTGGTATTGGTGTTTCTAGTTGAGAGTC
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120785617 27 + 123690457 aggagc------tgatgttccagtttgagggtc
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr6                 75025 27 + 174439528 GAAGGCTGGTGTTGTAGTTTGAGGTTC------
i papAnu2.chr6             I 5 C 0
s chlSab2.chr4              89568378 33 -  91010382 AGGAGCTGGTGTTGGTGTTTGTAGTTGAGGGTC
i chlSab2.chr4             I 2264 I 3268
e calJac3.chr5              41963624 7606 + 159171411 T

a score=2054.000000
s hg38.chr3_KI270935v1_alt     19845 3 +    197351 GTG
s panTro4.chr3                648615 3 - 202329955 GTG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199671338 3 + 202140232 GTG
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120785644 3 + 123690457 ttg
i nomLeu3.chr11            C 0 I 3854
s papAnu2.chr6                 75052 3 + 174439528 GTG
i papAnu2.chr6             C 0 C 0
e calJac3.chr5              41963624 7606 + 159171411 T
e chlSab2.chr4              89568411 3268 -  91010382 I

a score=600.000000
s hg38.chr3_KI270935v1_alt     19848 1 +    197351 G
s panTro4.chr3                648618 1 - 202329955 G
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199671341 1 + 202140232 G
i ponAbe2.chr3             C 0 C 0
s papAnu2.chr6                 75055 1 + 174439528 G
i papAnu2.chr6             C 0 I 438
e calJac3.chr5              41963624 7606 + 159171411 T
e chlSab2.chr4              89568411 3268 -  91010382 I
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=118224.000000
s hg38.chr3_KI270935v1_alt     19849 512 +    197351 TATTTCCAGGGTTTCACAGAGGCCAGATTTTATTTCAGTTACTCAGAAGAGAAAGAAAATGTCTTCTGAAAGAGGTGAACTCAGTCATTACCAATAGAAAAAGTATCCACTGTATTTATCTCTTATACAAACAGAAAAATATAACATTTTCCCCCTTAGAatatatatatatatatatatatatatatatatatatatatatatatatatataAAACTTAAGGTTCTATTGTATGTATCCGAACAATAAAATCTGGAAACCAGCATGAAACTCTATTATTCACATGTTAAAATGTTGAAACTATGACCAAAATATGAAAACTGCTGGAGCTATCAGAAAGACACAAGACAAAAAGCTTCTTGCATATGTATAAACTAAATGTGATAATCTCAAAAAACTGTTCAAAATTATAATTACTTTCCAGTTTAAAAACTTTAATCCTAAATTAAAAAAAAAA---------ATCTATACACAAACCACTGATTTGCCCAGACCaaagaaagaaagaaagaaagaaa
s panTro4.chr3                648619 480 - 202329955 TATTTCCAGGGTTTCACAAAGGCCAGATTTTATTTCAGTTACTCAGAAGAGAAAGAAAATGTCTTCTGAAAGAGGTGAACTCAGTCATTACCAATAGAAAAAGTATCCACTGTATTCATCTCTTATACAAACAGAAAAATATAACATTTTCCCCCTTAGaata-------------------------------atatatatatatatatataaaaCTTAAGGTTCTATTGTATGTATCCGAACAGTAAAATCTGGAAACCAGCATGAAACTCTATTATTCACATGTTAAAATGTTGAAACTATGACCAAAATATGAAAACTGCTAGAGCTATCAGAAAGACACAAGACAAAAAGCTTCTTGCATATGTATAAAGTAAATGTGATAATCTCAAAAAACTGTTCAAAATTATAATTTCTTTCCAGTTTAAAAACTTCAGTCCTAAATTTAAAAAAAAA----------TCTATATACAAACCACTGATTTGCCCAGACCaaagaaagaaagaaagaaagaaa
i panTro4.chr3             C 0 I 582
s ponAbe2.chr3             199671342 484 + 202140232 TATTTCCAGGGTTTCACAAAGGCCAGATTTTATTTCAGTTACTTAGAAGAGAAAGAAAATGTCTTCTGAAAGAGGTGAACTCAATCATTACCAATAGAAAAAGTATCCACTGTATTAATCTCTTATTAAAACAGGAAAATATAACATTTCCCCCCTTAGAATA-------------------------------ATGTATATATATGT------AACTTAAAGTTCTATCATATGTAGCCAAACAATAAAATCTGGAAACCAGCATGAAACCCCATTATTCACATGTTAAAATGTTGAAACTATGACCAAAATATGAATACTGCTAGAGTTATCAGAAAGACACAAGACAAAAAGCTTCTTGCATATGTATAAAGTAAATGTGATAATCTCAAAAAACTGTTCAAAATTATAATTACTTTCCAGTTTAAAAACTTCAATCCTaaaaaaaaaaaaaaaaaaaaaaaaaaCTATACACAAACCACTGATTTGCCCAGACCaaaaaaagaaagaaagaaagaaa
i ponAbe2.chr3             C 0 C 0
e calJac3.chr5              41963624 7606 + 159171411 T
e chlSab2.chr4              89568411 3268 -  91010382 I
e papAnu2.chr6                 75056 438 + 174439528 I
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=-1299.000000
s hg38.chr3_KI270935v1_alt     20361 34 +    197351 agaaagaaagaaagaaagaaagaaagaaagaaag
s ponAbe2.chr3             199671826  1 + 202140232 A---------------------------------
i ponAbe2.chr3             C 0 C 0
e calJac3.chr5              41963624 7606 + 159171411 T
e chlSab2.chr4              89568411 3268 -  91010382 I
e papAnu2.chr6                 75056 438 + 174439528 I
e nomLeu3.chr11            120785647 3854 + 123690457 I
e panTro4.chr3                649099 582 - 202329955 I

a score=502906.000000
s hg38.chr3_KI270935v1_alt     20395 1980 +    197351 aaagaaagaaagaaagaaagaaagaaagaaagaaaAAGAAATCAGCGGTAAGGTAAGCAGGACCCAGAGGAGCTGATATTCACAGTTCTTACATGGACAACTCTTTCAGGAATTATCCATAAAGTACTTTATTTTACAACCTGCTTTTCTTATAAAACTAAAGGTGCACTTTTTTACATAAAAGTTTTATACAGTGTTAAAACCAGAACTGTGTGTAAAATACTGCATGTAAATGTTTCTAAATAGTCTTGTTCCAGTGGTTCATCGGTGACTTCTGTGGCTTCGTCATCATTATCCATGGATGATTCTGAAAGAATCTCTCCAGTTTTACTGGAATTGGATCCTACTAATTCTTCTGTTTCACGGCAGTCAGAAGAACCACTACTTTCAGGGCCTTCGTTTTCACTACCTTCAGAATGTAGTAAATCTTTCTCAGCTTGAGACACATCAGATTCCTCCATTTCATTATTTTCCTCAGAAGTCTCTTCATTCACAGTTGAGGCATCATCAGATTCTTTTTCTTGGTTTTTTCTTTCTGGGACCATTTCTCTTGATGTCATAAAAGACTCTAAAAATAAGCAAATGTTGTTGTACTTAAATTTTATATTCAAAATACCTCCACAGTTAAGTTTCGTGAATTCTGATGTTCTGTAGTTCAAATCACATCCCCTGAAATTCAGCAGCAACTGCATACAGGTGGGAGAAAAGCCCAGCGTCGACATTACAAGGAGTTCCATGATGTACAATTCTTTCACAAAAACAATGAATGCAAGAATTTGAGGATCTCCTTACTCCTCCCTTTTACAGATGGT--CTCTCAATCCcttcttcttcctcttcatcttc------atcttcttctGAACGCGCTGCCGGGTACCATGGCTTTTTTTGTCTTTATCATGAGATGAAGGTGATGCTTCTGTTTCTTCTACCATAACTGAAGAAATTTCGCTGCAAGTCGCTTGACTGGCTATTTCTCCGACTTCGCCTTTTTTGTCAAACCTGAGTCTTTTTACCTCATGCCCCTCAGCTTCCACAGCATCTTCATCTGGATGTTTATTTCTCAAAGGGCTCACTGAGGAAACTTCTGATTCAGATGTCGAAGAGTCACTG--AGTTTTCTCTTCATTTTGCTGCAAATTTGCCTCTTTGCTGTCTGTGCTCTCAGGCCACCCATTTGTTGTCATGGGGGCTGACAGAGAAACCTTTGGTCGATTACGTGGCCTGGGTGTCCCAGGCCCATTTATATTAGACCTCTCAGTATAGCTTGGTGCATTTCCAGGAAACATCACACCATTCATTCGATTTAAACTATTGGAATTGTTTTTCTCTGAAGAAGGATAAACACAGCTAACAACCATCACGTTCTTTTCTACTCCTCTGAGAAATTTGTCTGTTCCTGTATAGTTTCTCCTCGGATCTGTTAACAATTCACATAATCGCTGAATAGTAAAAGGGATACGGTTAAATCCAGTGACAGTTTTTCAGTATTCTTCCCTTTGTTTCATCACAGGGAATATATTCGACATTAGGGTTGGGAGGACCTCTTGGCGCAGGAGCTGAAGTTCTGAAATCATCCATCACTTTCTCCAGTTTGAAAATAAAATAGCCTTTAAATTGGGACCACGGAATCTGTTTCTCCAGTCTTGGCTACATGACAAAAGGAACTGATCCAGGACAGGACAGACTTTCTTTTTTGCC-TCTTCTCAAAATCTTCCAGCGCCTCCTGGAGCCTGTCGACGTCCATGGCTTCCCGGAGTCCCTCACAGCCTCCGCCTCCCTCCGCGGGTCTCTTGGGGACCGGAACGCCTCCCCCCACCCCCCGACGTCCTCCCACTCCCTCGCACACCCTCCAGCACGCAGGCCAAGTGGGGTGGGGGGGAACGAAGGGAGCC-GGGGAAGCGTGTGAGAGAGTGAGACCGACAGAGTGAGCACCT-CCCCAAGCCGCTACCACCAGCCCTCCAACATGGCGCCTGGCACATCACCC
s panTro4.chr3                649681 1982 - 202329955 aaagaaagaaagaaagaaagaaaga--gaaagaaagagaaaTCAGCGGTAAGGTAAGCAGGATCCAGAGGAGCTGATATTCACAGTTCTTACATGGACAACTCTTTCAGGAATTATCCATAAAGTACTTTATTTTACAACCTGCTTTTCTTGTAAAACTAAAGGTGCACTTTTTTACATAAAAGTTTTATATGGTGTTAAAACCAGAACTGTGTGTAAAATACTGCATGTAAATGTTTCTAAATAATCTTGTTCCATTGGTTCACCGGTGACTTCTGTGGCTTTGTCATCATTTTCCACGGATGATTCTGAAAGAATCTCTCCAGTTTTACTGGAATTGGATCCTACTAATTCTTCTGTTTCACGGCAGTCAGAAGAACCACTACTTTCAGGGCCTTCGTTTTCACTACCTTCAGAATGTAGTAAATCTTTCTCAGCTTGAGACACATCAGATTCCTCCATTTCATTATTTTCCTCAGAAGTCTCTTCATTCACAGTTGAGGCATCATCAGATTCTTTTTCTTGGTTTTTTCTTTCTGGGATCATTTCTCTTGATGTCATAAAAGACTCTAAAAATAAGCAAATGTTGTTGTACTTAAATTTTATTTTCAAAATACCTCCACAGTTAAGTTTCATGAATTCTGATGTTCTGTAGTTCAAATCACATCCCCTGAAATTCAGCAGCAACTGCATACAGGTGGGAGAAAAGCCCAGCGTCGGCATTACAAGGAGTTCCATGATGTACAGTTCTTTCACGAAAACAATGAATGCAAGAATTTGAGGATCTCCTTACTCCTCCCTTTTACAGATGGT--CTCTCAATCCcttcttcttcctcttcatcttc---ttcatcctcttctGAATGCGCTGCCGGGTGCCACGGCTTTCTTTGTCTTTATCCTGAGATGAAGGTGATGCTTCTGTTTCTTCTACCATAACTGAAGAAATTTCGCTGCAAGTCGCTTGACTGGCTGTTTCTCCAACTTTGCCTTTTT-GTCAAACCTGAGTCTTTTTACCTCATGCCCCTCAGCTTCCACAGCATCTTCATCTGGATGTTTATTTCTCAAAGGGTTCACTGAGGAAACTTCTGATTCAGATGTCGAAGAGTCACTGTGAGTTTTCTCTTCATTTTGCTGCAAATTTGCCTCTTTGCTGTCTGTGCTCTCAGGCGACCCTTTTGTTGTCATGGGGGCTGACAAAGAAACCTTTGGTCGATTAAGTGGCCTGGGTGTCCCAGGCCCATTTATATTAGACCTCTCAGTATAGCTTGGTGCATTTCCAGGAAACATAACACCATTCATTCGATTTAAACTATTGGAATTGTTTTTCTCTGAAGAAGGATAAACACAGCTAACAACCATCACGTTCTTTTCTACTCCTGTGAGAAATTTGTCTGTTCCTGTATAGTTTCTCCTTGGATCTGTTAACAATTCACATAGTCGCTGAATAGTAAAAGGGATACGGTTAAATCCAGTGACAGTTTT-CAGTATTCTTTCCTTTGTTTCATCAAAGGGAATATATTCGACATTAGGGTTGGGAGGACCTCTTGGCGCAGGAGCTGAAGTTCTGAAATCATCCATCACTTTCTCCAGTTTGAAAATAAAATAGCCTTTAAATTGGGACCACGGAATCTGTTTCTCCGGTCTTGGCTACATGACAAA-GAAACTGATCCAGGACAGGACAGACTTTCTTTTTCCCCCTCTTCTCAAAATCTTCCAGCGCCTCCTGGAGCCTCTCGACGTCCATGGCTTCCCGGAGTCCCTCACAGCCTCCGCCTCCCTCCGCGGGTCTCTTGGGGACCGGAACGCCTCCCCCCACCCCCTGACATCCTCCCACTCCCTCGCACACCCTCCAGCACGCAGGCCAAGTGGGGTGGGGGGGAACGAAGGGAGCCAGGGGAAGCGTGTGAGAGAGTGAGACCGACAGAGTGAGCACCT-CCCCAAGCCGCTACCACCAGCCCTCCAACATGGCGCCTGGCACGTCACCC
i panTro4.chr3             I 582 C 0
s ponAbe2.chr3             199671827 1950 + 202140232 ----------------------------------------ATCAGTGGTAAGGTAAGCAGGACCCAGAGGAGCTGATATTCACAGTTCTTACATGTACAACTCTTTCAGGAATTATTCATAAAGTACTTTATTTTACAACCTGCTTGTCTTGTAAAACGGAAGGTCTACTTTTGTACATAAAAGTTTTATACGGTATTAAAACCAGAACTGTATGTAAAATACTGCATCTAAATGTTTCTACATAACCTTGTTCCATTGGTTCATCGGTGACTTCTGCGGCTTCATCATCATTTTCTATGGATGATTCTGAAAGAATCTCTCCAGTTTTACTGTAATTGGATCCTGCTAATTCTTCTGTTTCACGGCAGTCAGAAGAACCACTACTTTCAGGGCCTTCATTTTCATTACCTTCAGAATGTAGTAAATCTTTCTCAGCTTGAGACACATCACATTCCTCCATCTGATTATTTTCCTCAGAAGTCTCTTCATTCATAGTTGAGGCATCATCAGATTCTTTTTCTTGATTTTTTCTTTCTGGGATCATTTCTCTTGATGTCATAAAAGACTCTAAAAATAAGCAAATGTTGTTGTACTTAATTTTTATTTTGAAAATTCCTCCACAGTTAAGTTTGATGAATTCGGATGTTCTATAGTTCAAATCACATCCCCTGAAATTCAGCGGCAGCTACATACAGGTGGGAGAGAAGCCCAGCGTCGGCATTACAAGGAGTTCCGTGATGTACAATTCTTTCATGAAAACAATGAATGCAAGAATTTGAGGATCTCCTTACTCCTCCCTTTTACGGATGGTCCCTCTCAATACcttcttcttcctcttcgtcctcttcttcatcctcttctGTACACGCTGCTGGATACAACGGCTTTCTTTATCTTTATCCTGAGATGAAGATGATGCTTCTGTTTCTTCTACCATAACTGAAGAAATTTCGCTGCAAATCGTTTGACTGGCTGTTTCTCTGACTTCGTCTTTTTTGTCAAACCTGAGTCTTTTTACCTCATGCCCCTCAGCTTCCACAGCATCTTCATCTGGATGTTTATTTTTCAAAGGGCTCACTAAGGAGACTTCTGATTCAGATGTCAAAGAGTCACTGTGATTTTTCTCTTCATTTTGCTGCATATGTGCCTCTTTGCTGTCTGTGCTCTCAGGCAACCCATTTGTTGTCATGGGGGCTGACAAAGAAACCTTTGGTCGATTAAGTGGCCTGGGTGTCCCAGGCCCATTTATATTAGACCTCTCAGTATAGCTTGGTGCATTTCCAGGAAACATAACACCATTCATTCGATTTATACTATTGGAATTGTTTTTCTCTGAAGAAGGATAAACACAGCTAACAACCATCACGTTCTTTTCTACTCCTCTGAGAAATTTGTCTGTTCCTGTATAGTTTCTCCTTGGATCTCTTAACAATTCCCATAGTCGCTGAATAGTAAAAGGGATACCGTTAAATCCAGTGACAATTTT-CAGTATTCTTTCCTTTGTTTCATCAAAGGGAATATATTCCACATTAGGGTTGGGAGGACCTCTTGGCTCAGGAGCTGAAGTTCTGAAATCGTCCATCACTTTCTCCAGTTTGAAAATAAAATAGCCTTTAAATTGGGACCACTGAATCTGTTTCTCCAGTCTTGGCTACATGACAAA-GAAACCGATCCAGGACAGGACAAACTTTCTTTTTCCCCCTCTTCTCAAAGTCTTCCAGTGCCTCCTGGAGCCTGTCAACGTCTATGGCTTCCTGGAGTCCCTCACAGCCTCCGCCTCCCTCTGCGGGTCTCTTGGGGACCGGAACTCTTCCCCCCACCCCCCCACGTCCTCCCACTCCCTCGCACACACTCCAGCTCGCAGGCCAAGTGGGGTGGGGGGGAACGAAGGGAGCC-AGGGAAACGTGTGAGAGAGGGAGACCGACAGAGCGAGCACCTCCCCCAAGCCGCTACCACCAGCCCTCCAACATGGCGCCTGGCACGTCACCC
i ponAbe2.chr3             C 0 C 0
e calJac3.chr5              41963624 7606 + 159171411 T
e chlSab2.chr4              89568411 3268 -  91010382 I
e papAnu2.chr6                 75056  438 + 174439528 I
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=753303.000000
s hg38.chr3_KI270935v1_alt     22375 703 +    197351 TAAAAAGTCATTTCTTGGAGAAGCGATGGATGACAGAGATTAATCTGAGAGTTACTATTAATGGAGAAACTTAGAACTTACCATTTTTCCTGTGAGGTTTCGGTGCTGATACTTCTATTCTGTGAGTTCTGGCAATTGTGTCCGTTCACCCAGCCTGGTGATGCAGCAGGTGTCACAGAAGGACCCTGTCCCAGCTGGTCCTGCTCCACTGCTAGGATG-GTGTGGCCTCTGATCTGTGACC-----GTGTCTTGAGGGGAGACCAGGCCCTTGATCACAAGCGTATCCATGGTGAGGTTCCGTGGATGGAA---------GCTCATGGATGTTCCTTCCTGATGTTCATCTGCCACCATGCTATTGAATGCATCTTGTttataactgtcttctaaatattgaatagaaataaagcgtttttacagtatgggtaaggtataaagaatattgacacattggacacagaggacctccaccaagtttagggagtagaatctgaagagacatagctttggatgc-tccctggaggccctgcctgagtcccagtcccttcccttctcctacggagggaatcacttcctgctttagtctttattatttgcacactttccttcatagtatgtttctttcaccg--tgtgtgtacatccct-aaaagatatgccatttagtttttgaactttctgttttctttttgaggcaggg-tcttgctctgttgcct
s panTro4.chr3                651663 703 - 202329955 TAAAAAGTTATTTCTTGGAGAAGCTATGGATGACAGAGATTAATCTGAGAGTTACTATTAACGGAGAAACTTAGAACTTACCATTTTTCCTGTGAGGTTTCGGTGCTGATACTTCTATTCTGTGAGTTCTGGCAATTGAGTCCATTCACTCAGCCTGGTGATGCAGCAGGTGTCACAGAAGGACCCTGTCCCAGCTGGTCCTGCTCCACTGCTAGGATG-GTGTGGCCTCTGATCTGTGACC-----GTGTCTTGAGGGGAGACCAGGCCCTTGATCACAAGCGTATCCATGGTGAGGTTCCGTGGATGGAA---------GCTCATGAATGTTCCTTCCTGATGTTCATCTGCCACCTTGCTATTGAATGCATCTTGTTTATAACTGCCTTCTACATATTGAatagaaataaagcatttgtacagtatgggtaaggtataaagaatattgacacattggacacagaggacctgcaccaagtttagggagtagaatctgaagagacataactttggatgc-tccctggaggccctgcctgagtcccagtcccttcccttctcctacggagggaatcacttcctgctttcgtctttattatttgcacactttccttcatagtacgtttctttcaccg--tgtgtgtacatccct-aaaaaataagccatttagttttTGAACtttctgttttctttttgaggcaggg-tcttgctctgttgcct
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199673777 704 + 202140232 TAAAAAGTTATTTCTTGGAGAAGTGATGGATGACAGAGATTAATCTGAGAGTTACTATTAATGGAGAAACTTAGAACTTACCATTTTTCCTGTGAGGTTTTGGTGCTGATACTGCTATTCTGTGAGTTCTGGCAATTGAGTCCATTCCCACAGCCTGGTGATGCAGCAGGTGTCACAGAAGAACCCTGTCCCAGCTGGTCCTGCTCCACTGCTATGATG-GTGTGGCCTCTGATCTGTGACC-----GTGTCTTGAGGGGAGACCAGGCCCTTGATCACAAGCGTATCCATGGTGAGGTTCCGTGGATGGAA---------GCTCATGGATGTTCCTTCCTGATGTTCATCTGCCACCTTGCTATTTAATGCATCTTGTTTATAACTGTCTTCCaaatattgaatagaaataaagcatttgtacagtatgggtaaggtataaagaatattgacacattggacacagtggacctccaccaggtttagggagcagaatctcaagagacataactttggatgc-tccctggaggccctgcctgagtcccagtcccttcccttctcctacggagggaatcgcttcctgctttagtctttattattcctacactttccctgatagtatgtttctttcaccg--tacgtttacatccctgaaaaaatatgccatttcattttggaactgtgt-ttttgTTTTTGAGACAGGGTTCTTCCTCTGTTGCCT
i ponAbe2.chr3             C 0 I 1157
s papAnu2.chr6                 75494 692 + 174439528 taaaaagttatttcttgGAGAAGCGATGGATGACAAAGATTAATCTGAGAGTTACTATTAATGGAGAAACTTAGAACTTACCATTTTTCCTGTGAGGTTTCGGTGCTGATACTGATACTCTGTGAGTTCTGGCCGCTGAGTCCGTTTGCACAGCCTGGCGATGCAGCAGGT-TCACAGAAGGGCCATGTCCCAGCTGCTCCTGCTCCA---CTATGATG-GTGCGGCCTCTGCTCT-----------GTGTCGTGAGGGGAGACCAGGCCTTTTATCACAAGCGTATCCATGGTGAGGTTCTGTGGATGGAA---------CCTCATGGATGTTCCTTCCTGATGTTCATCGGCCATCTTGCTATTTAATGCATCTTGTTTATAATTGTCTTCTAAATATTGAATAGAAATAAAGCATTGGTACAATATgggtaaaatataaagaatatcaACACATTGGACACAGAGGACCTCCACCAAGTTTAGGGAATAGAATCTGAAGAGACATAACTTCAGATGT-TCCCTGGAGGCCCTGCCTGAGTCCcagtcccttcccttctcctacAGAGGGAATCACTTCCTGCTTTAATCTTTATTGTTCCCGTACTTTTCTTCACAGTACGTTTCTTTCACCGCATATGTGTACATCCC----AAAATATGCCATTTAGTTTTtgaactttctgttttctttttgaggcaggg-tcttgctctgttgcct
i papAnu2.chr6             I 438 C 0
s chlSab2.chr4              89571679 690 -  91010382 TAAAAAGTTATTTCTTGGAGAAGCGATGGATGACAGACATTAATCTGAGAGTTACTATTAATGGAGAAACTTAGAACTTACCATTTTTCCTGTGAGGTTTCGGTGCTGATACTGATACTCTGTGAGTTCTGGCCGCTGAGTCCGTTTGCACAGCCTGGCGATGCAGCAGGT-TCACAGAAGGGCCCTGTCCCAGCTGCTCCTGCTCCA---CTATGATG-GTGCGGCCTCTGCTCT-----------GTGTTGTGAGGGGAGACCAGGCCTTTGATCACAAGCGTATCCATGGTGAGGTTCTGTGGATGGAA---------CCTCATGGATGTTCCTTCCTGATGTTCATCGGCCATCTTGCCATTTAATGCATCTTGTTTATAACTGTCTTCTaaatattgaatagaaataaagcattggtacaatatgggtaaaatataaagaatatcgacacattggacacagaggacctccaccaagtttagggaatagaatctgaagagacataacttcagatat-tccctggaggccctgcctgagtcccagtcccttcccttctcctacagagggaatcacttcctgctttaatctttattgttcccgtacttttcttcacagtatgtttctttcaccgcgtatgtgtacatccc--aaaaaatatgccatttagttttTGAA----CTAttttctttttgaggcaggg-tcttgctctgttgcct
i chlSab2.chr4             I 3268 C 0
s calJac3.chr5              41956018 692 + 159171411 TAAAACGTTGTTTCATGGAGAAGTGATGGAGGACAGAGATTAATCTGAGAGTTG-TATTGATGGAGAAACTGAGAACTTACCA--TTTCCCGTGAGGTTTCGGTGTGG--AATGATACTCTGTGCGTTCTGGCAGCTGAGTCCGTTCACACAGCCTGGTGATGCAGTAGGTGTTACAGAAGGGCC-TCTCCCAGCTGGTCCTGCCTCTCTGCTGTGATGAGTGCTGCCTCTGATCCCCGACCACTGACTGTCTTGAGAGGAGACCAGGCCTATGAGCACAAGGGTGTCCATGGTGAGGTTCCATGGATGGAGCACAGGGACGCTCCTG-ATGTGCCTTCCT-ATGCTCATCCGCCATCTTGCAATT-AATGCATCTTGTTTATAACTGTCTTCTAAAGACTGGGTAGAaa-aaagcatttgtaccatatgggtcagggataaagaat-------------aagcataggacctctaccaagtttagggaataaaaac-aaagagacagaactttggatgcttccctggaggcccctcctgagtcccagtcccttccctt---ctacagagggagtcactttctg-tttagcctttcttattcctgtacttttctttatagtttatttctttcaccatctacatgtttatccct-aaacaatatgccatttagtttttgaagtttct-gtgtctttttgagacaggg-tcttgctctgctgctg
i calJac3.chr5             T 7606 C 0
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=114845.000000
s hg38.chr3_KI270935v1_alt     23078 147 +    197351 cggctgtagttttgaactttgacgtgagggaattctcctgcgtggctgctcctgcactgca-tggctctgagcacctgctctgtgtctatttttgtcctccattctctccctgagacccacccacactgacatggctcattttcattg
s panTro4.chr3                652366 147 - 202329955 cggctgtagttttgaacttTGACGTGAGGAAATTCTCCTGCGTGGCTGCTCCTGCACTGCA-TGGCTCTGAGCATCTGCTCTGTGTctatttttgtcctccattctctccctgagacccacccacactgacatggctcattttcattg
i panTro4.chr3             C 0 C 0
s papAnu2.chr6                 76186 145 + 174439528 cgGCTGTAGTTTTGAACTTTGATGTGAGGAAATTCTCCTGTGTGGCTGCTCCTACGCTGCA-TGGCTCTGAGCATCTGCTCAAtgtctgtttttgtcttccattCTCCCCCTGAGACCCACCCACACTGATGTGGTTCATTTTCAT--
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89572369 147 -  91010382 cggctgtagtTTTGAACTTTGATGTGAGGAAATTCTCCTGTGTGGCTGCTCCTGCACTGCA-TGGCTCTAAGCATCTGCTCAATGTCTGTTTTTGTCTTCCATTCTCCCCCTGAGACCTACCCACACTGATGTGGTTCATTTTCATTG
i chlSab2.chr4             C 0 I 1704
s calJac3.chr5              41956710 148 + 159171411 cggccatagttttgaactccgatgtggagaaattctcctgtgtggctgctcctaggctgcactgggtctgagcatctgctccatgtctattcttgtcctccattctcttcccgagacccatccacattgacgttattcattttcactg
i calJac3.chr5             C 0 C 0
e ponAbe2.chr3             199674481 1157 + 202140232 I
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=6480.000000
s hg38.chr3_KI270935v1_alt     23225 17 +    197351 ctgcatggtctcccgtc
s panTro4.chr3                652513 17 - 202329955 ctgcatggtctcccgtc
i panTro4.chr3             C 0 C 0
s papAnu2.chr6                 76331 16 + 174439528 -TGTGTGATCTCCCATC
i papAnu2.chr6             C 0 I 1017
s calJac3.chr5              41956858 17 + 159171411 ctgcgtaatctcccatg
i calJac3.chr5             C 0 C 0
e chlSab2.chr4              89572516 1704 -  91010382 I
e ponAbe2.chr3             199674481 1157 + 202140232 I
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=151298.000000
s hg38.chr3_KI270935v1_alt     23242 754 +    197351 gtctgaggggagcatgggaaatgtcttcatcttcccgtggatgagtgtttggccaggttggggcccttaggactgtgttttgttgggaacgttcttgggcatttcttttgtacacaagcgcaagtttcttctggtcagtagctttcaaattttaaaatttcatcccaggtaa-aaatgtaattttcctcataacccacaacacacacactttcatatacaagcatagcagaaata------------tacttcacaagcgttagcagtgcctg-gtgttcctgcttctctccattctccccaacgctggcatggattgggttgtggg--------atttttgcccgtctggtggttgtcacgtgatatctccccctgttaggctgagcccctcttcatgttttcattagccattcctccacatttcctcttctgtggagggccggttcagctcttttgcccagtttctgttaagttgtttgaatttttGCACTTTTCCTTTATTATTCCTATTACTATGtttttgagaca--atatcactctgccacccaggctggagtgcagtggcgcgatctcagctcactgcaacctccatcttctgggttcaaatgattctcctgcctcagcctcccaagtggctgggattacaggcacgcaccaccacgcccaactaatttttatatgtttactacagatggggtttcaccatgttgtccaggctggtctgaaactcctgacctcaggtgattctcccacctcagcctcccaaagtgctggga
s panTro4.chr3                652530 759 - 202329955 gtctgaggggagcatgggaaatgtcttcatcttcccgtggatgagtgtttggccaggttggggcccttaggactgtgttttgttgggaacgttcttgggcatttcttttgtacacaagcgcaagtttcttctggtcagtagctttcaagttttaaaatttcatcccaggtaa-aaatgtaattttcctcataacccacaacacacactctttcatataccagcatagcagaaata------------tacttcacaagcattagcagtgcctg-gtgttcctgcttctctccattctccccaacgctggcatggattgggttgtggggttgtgggatttttgcccgtctggtgggtgtcacgtgatatctccccctgttaggctgagcccctcttcatgttttcattagccattcctccacatttcttcttctgtggagggccggttcagctcttttgcccagtttctgtt-----gtttgaatttttgcacttttcctttattattcctaTAACTATGtttttgagagagaatatcactctgtcacccaggctggagtgcagtggcgcaatctcagctcactgcaacctccatcttctgggttcaaatgattctcctgcctcagcctcccaagtggctgggattataggcacacaccaccacgcccagctaatttttatatgtttactacagatggggtttcaccatgttttccaggctggtctgaaactcctgacctcaggtgattctcccccctcagcctcccaaaatgctggga
i panTro4.chr3             C 0 C 0
s calJac3.chr5              41956875 733 + 159171411 gtatgagggggacat-ggaagtgtcttcattttcctgttgatga-tgtttgtccaggttggggtccttaggactgtg--ttgct-agaatattctagggcattt-ttttgtacacaagtgccagtttcttttggtgagtagctttcactttttaaaatttcatcccaggtaagaaatgtgattttcctcata----acaacacacaccatttcatatgcaagtataacaaaaaaaatttgttatcagtgataaaaaatttttattagtggctgagtgttcttgttgctctccactctccccaacacttgcatttattgggctgtggg--------atttttgccagtctggtgggtgtcacgtgatacttcatcctgttaggctgaggccctcttcatgtttttattggtcttttcttcacatttcctcttctgtgaagggctggttcaactcttttgcccagattctgtttagttgtctgaatttttg--------ccttattattatta----------tttgagatggagttgccctctgtcacccaggctggagtacagtggtacgatcttggctcactgccacctccatcttccgggttcaagcgattctcctgccttagcttccagagttgctgggattaaaggcatgtgccaccatgtccagctattttttgtatgtttagtagagacgggatttcaccatgttgaccaggctg---------ccttgacctcaggtgacctgcctgccttggcttcccaaagtgcttgga
i calJac3.chr5             C 0 C 0
e chlSab2.chr4              89572516 1704 -  91010382 I
e papAnu2.chr6                 76347 1017 + 174439528 I
e ponAbe2.chr3             199674481 1157 + 202140232 I
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=91086.000000
s hg38.chr3_KI270935v1_alt     23996 1008 +    197351 ttatgtgggtggcaagccacccaggcaccgaggcaagagacagaggacacgagctgttccagtataataaaatataaaacaagaatagttataccagatatagatcttagatatgattatatatgaatatcattaatcattagtttgtagcaattactttttattccaatattatgataatccttgctctataatcgtagcctaggaaaaaccaggccatacagagataggagctgaggggacatagtgaggtgtgaccagaagacaagagtgcgagccttctgttatgcccggaccgggccaccagagggctccttggtctagcggtgatgccagcgtctgggaagatgcctgttaccaggcggat--------------agcaaaaggtgtcaaggaacaacacccgatacttagcagaccgggaaagggcggggaggggggggggtctccctttccccgggggagtttagagaagactctgctcctccacctcttgtggagggcctgacatcagtcaggctcgcctgcagttatccggaggcctaaccgtctccctgtgatgctgtgcttcagtggtcacgctcctagtccgccttcatgtttcatcctgtacacctggctctgccttctagatagcagtagtaaattagtaaaaatactaatagtccctgatatgcggaaataatggcataagctgtctttctctctgtctcctctccctctctgcctcggctgccaggcagggaagggccccctgtccagtggacacgtgacccacgtgaccttacctatcattgcaggtgactcacattctttaccctgccccttctgccttgtatccaataaataacagcgcagccagacattcggggcactaccgttctccgcgcattggtggtagtggccccccgggcccagctgccctttctcttatctctttgtcttgtgtctttatttctacactctctcgtcgccgcacacagggagagacccaccgaccctgtggggctggtccctgc
s panTro4.chr3                653289 1016 - 202329955 ttatgcgggtggcaagccacccaggcaccgaggcaagagacagaggacacgagctgttccagtataataaaatataaaacaagaatagttatgccagatatagatcttagatatgattatatatgaatatcattaatcattagtttgtagcaattactttttattccaatattatgataatcctcgctctataatcatagcctaggagaaaccaggccatacagagataggagctgaggggacatagtgaggtgtgaccagaagacaagagtgcgagccttctgttatgcccggaccgggccaccagagggctccttggtctagcggtgatgccagcgtctgggaagacgcccgttaccaggcagatcgtggtccagcggtagcaaaaggtgtcaaggaacaacacccaatacttagcagactgggaaagggtgggg------gggtgtctttctttccccaggggagtttagagaagactctgctcctccacctcttgtggagggcctgacatcagtcaggctcacctgcagttatctggaggcctaaccgtctccctgtgatgctgtgcttcagtggtcacactcctagtccgccttcatgtttcatcctgtacacctggctctgccttctagatagcagtagtaaattagtaaaaatactaatagtccctgatatgcggaaataatggcataagctgtctttctctctgtctcctctccctctctgcctcggctgccaggcagggaagggccccctgtccagtggacatgtgacccacgtgaccttacctatcattggaggtgactcacattctttaccctgccccttctgccttgtatccaataaataacagcgcagcgagacattcggggcactaccggtctccgcgcattggtggtagtggtcccccgggcccagctgccctttctcttatctctttgtcttgtgtctttatttctacactctctcgtcgccgcacacagggagagacccaccgaccctgtggggctggtccctgc
i panTro4.chr3             C 0 C 0
e calJac3.chr5              41957608    0 + 159171411 C
e chlSab2.chr4              89572516 1704 -  91010382 I
e papAnu2.chr6                 76347 1017 + 174439528 I
e ponAbe2.chr3             199674481 1157 + 202140232 I
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=273.000000
s hg38.chr3_KI270935v1_alt     25004 1 +    197351 a
s panTro4.chr3                654305 1 - 202329955 a
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199675638 1 + 202140232 a
i ponAbe2.chr3             I 1157 C 0
e calJac3.chr5              41957608 0 + 159171411 C
e chlSab2.chr4              89572516 1704 -  91010382 I
e papAnu2.chr6                 76347 1017 + 174439528 I
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=1267.000000
s hg38.chr3_KI270935v1_alt     25005 3 +    197351 GGG
s panTro4.chr3                654306 3 - 202329955 GGG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199675639 3 + 202140232 gga
i ponAbe2.chr3             C 0 C 0
s papAnu2.chr6                 77364 3 + 174439528 gga
i papAnu2.chr6             I 1017 C 0
e calJac3.chr5              41957608 0 + 159171411 C
e chlSab2.chr4              89572516 1704 -  91010382 I
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=6165.000000
s hg38.chr3_KI270935v1_alt     25008 9 +    197351 TTATAGGCA
s panTro4.chr3                654309 9 - 202329955 TTATAGGCA
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199675642 9 + 202140232 ttataggca
i ponAbe2.chr3             C 0 C 0
s papAnu2.chr6                 77367 9 + 174439528 ttacaagca
i papAnu2.chr6             C 0 C 0
s calJac3.chr5              41957608 9 + 159171411 ttacagata
i calJac3.chr5             C 0 C 0
e chlSab2.chr4              89572516 1704 -  91010382 I
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=607977.000000
s hg38.chr3_KI270935v1_alt     25017 511 +    197351 TGAGCCACCA---TGCCCGGCCTGCTTTTTTCTTTTTCAAAAGGACTCTTTCTAGATTATACCTATTCATTCCGGTGACTATATGTGGGGCAAAGATGGGTTTGAATCCACCAGGATAAACGTGCCGGATCTCCTCT--CTGATGGAAGAAgagac----agggatagaagggtgcagagaatcagagccaagaggaggccgagtcaggcgggggttgcaggctgctgtgaggacttggctgcttctctgagtctggtgggattagcaggggatttaaa-cagaggaaccgtgggatctcccttatgcattTCTGCCATGGTTGGCTCAGCTGAACACACCTCTTGAGCAAGACTTGGTCTTGGACACCCAGAGGCCCTTGGTTGAGGGTTTACCTCCTGGCGTGGCCACTGACACATCCACGTTTGTCTCCCACACGGCTGGGCGGCCCCGAGACCTGCTGTGCGTGCCCTTCTCATTGGTGGCATTTCTCAAGTTTGTCCCCTCTCAAGTCTGCCCCAT
s panTro4.chr3                654318 511 - 202329955 TGAGCCACCA---TGCCCAGCCTGCTTTTTTCTTTTTCAAAAGGACTCTTTCTAGATTATACCGATTCATTCCGGTGACTATATGTGGGGCAAAGATGGGTTTGAATCCACCAGGATAAACGTGCCGGATCTCCTCT--CAGATGGAAGAAgagac----agggatagaagggtacagagaatcagagccaagaggaggccgagtcaggcgggggttgcaggctgctgtgaggacttggctgcttttctgagactggtgggattagcaggggatttaaa-cagaggaaccatgggatctcccttatgcattTCTGCCATGGTTGGCTCAGCTGAACGCACCTCTTGAGCAAGACTTGGTCTTGGACACCCAGAGGCCCTTGGTTGAGGGTTTACCTCCTGGCGTGGCCACTGACACATCCACGTTTGGCTCCCACACGGCTGGGCGGCCCCGAGACCTGCTGTGCCTGCCCTTCTCATTGGTGGCATTTCTCAAGTTTGTCCCCTCTCAAGTCTGCCCCAT
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199675651 513 + 202140232 tgagccacca---tgcccggcGTGCCTTTTTCTTTTTCAAAAGGACTCTTTCTAGATTATACCTATTCATTCCGGTGACTATATGTGTGGCAAAGATGGGTTTGAATCCACCAGGATAAACGTGCTGGATCTCCTCT--Ctgatgggagaagagacagagagggatagaagggtgcagagaatcagagccaggaggaggccgagtcaggcgggggttgcaggctgctgtgaggacttggctccttctctgagttgggtgggattagcaggggatttgaa-cagaggaaccgtgggatctcccttatgCATTTCTGCCATGGTTGGCTCAGCTGAATGCACCTCTTGAACAAGACTTGGCCTTGGACACCCAGAGGCCCTTGGTTGAGGGTTTACCTCCTGGCATGGCCACTGACACATCCACGTTTGGCTCCCACACGGCTTGGCGGCCCCAAGACCTGCTCTGCCTGGGCTTCTCATTGGTGGCATTTCTCAAGTTTGTCCC--CTCAAGTCTGCCCCAT
i ponAbe2.chr3             C 0 C 0
s papAnu2.chr6                 77376 515 + 174439528 tgagccacca---tgtccagcctgcctttttctttttcaaaaggaCTCTTTATAGATTATACCTATTCATTCCGGTGACTATCTGTGTGGCAAGCATGGGTTTGAATCCACCAGGATGAACATGGAGGATCTCCTCT--CTGGTGGcagaagagacagaaagggataggaggggagagagaatcaGAGCCAagaggaggctgagtcaggcgggGGTTGCAGGCTGCTGTGAGGACTTGGCTGCTTCTCTGAGTCGGGTGGGATTCGCAGGGGATTTAAA-CAGAGGAACCATGGGATTTCCCCTGTGCATTTCTGCCATGGTTGGCTCAGCTGAACACACCTCTGGAACAAGACTTGGCCTTGGACACCCAGAGGCCCTTGGGTGAGGGTTTACCTCCTGGCATGGCCACTGACACATCCACGTTTGGCGCCCACACGACTGGGCGGCCCCAAGACCTGCTCTGCCTGGGCTTCCCCTTGGTGGCATTTCTCAAGTTTGTCCCCTCTCAAGTCTGCCCCAt
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89574220 515 -  91010382 tgagccacca---tgtccagcctgcctttttctttttcaaaaggactctttatagattaTACCTATTCATTCCGGTGACTATCTGTGTGGCAAACATGGGTTTGAATCCACCAGGATGAACATGGAGGATCTCCTCT--CTGGTGGCAGAAgagacagaaagggataggaggggagggagaatcagagccaagaggaggctgagtcaggtgggtgttgcaggctgctgtgaggacttggctgcttctctgagtcgggtgggattagcaggggatttaaa-cagaggaACCGTGGGATTTCCCCTGTGCATTTCTGCCATTGTTGGCTCAGCTGAACACACCTCTTGAACAAGACTTGGCCTTGGACACCCAGAGGCCCTTGGGTGAGGGTTTACCTCCTGACCTGGCCACTGACACATCCACGTTTGGCGCCCACACGACTGGGCGGCCCCAAGACCTGCTCTGCCTGGGCTTCCCCTTGGTGGCATTTCTCACGTTTGTCCCCTCTCAAGTCTGCCCCAT
i chlSab2.chr4             I 1704 C 0
s calJac3.chr5              41957617 521 + 159171411 tgagccaccaccgtgcctggcctgcctttttctttttcaagaggactctttatagatGATGCCCATTCATTTTAGTGACTATCTGTGTGGCAAAGATGGGTTTGAATCCACTAGAATGAACCTTCAGGATCTCCTCTgcgtggtgggagaagagacagagaggggtagatgggcatggagaatcagaggcgagaggaggccgagtcaggcgggggtcgcaggcagccgtgaggacttggctcctcctctgagccaggtgggattagcaggggattttaatcagagcagccatggggtctccctcgtgtattTCTGCTATGGTTGGCTCAGCTGAACTCACCTCTTCAACAAGACTTGGCCTTGTCCATCCAGAGGCCCGTGGCGGAGGGCTTAACTCCTGGCATGGCCACTGACACATCCACGTTTGGCGCACACATGGCTGGGCAGCCCCAAGACCGGCTCTGCCTGGGCCTCTCGTTGGCAGCATTTCTGGCGTTTGTCCCTTCCCAAGTCTGGCCTAT
i calJac3.chr5             C 0 n 0
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=49691.000000
s hg38.chr3_KI270935v1_alt     25528 65 +    197351 CCGGAAAACCAAACACCTCTCTCTCCTACATGGAAACCCCCGTCAGCACCTCCTCCTGACTCACA
s panTro4.chr3                654829 65 - 202329955 CCGGAAAACCAAACACCTCTCTCTCCTACATGGAAACCCCCGTCAGCACCTCCTCCTGACTCACA
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199676164 65 + 202140232 CCGGAAAACCAAACGCCTCTCTCTCCTACATGGAAACCCCCGTCAGCACCTCGTCCTGACTCACA
i ponAbe2.chr3             C 0 C 0
s papAnu2.chr6                 77891 61 + 174439528 ccggaaaaccaaacacctctcTCTCCTACATGGAAACCCCCGTCAGAACCT---CCCGACTCAC-
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89574735 62 -  91010382 CCAGAAAACCAAACACCTCTCTCTCCTACATGGAAA-CCCCGTCAGAACCTC--CCCGACTCACA
i chlSab2.chr4             C 0 I 131
e calJac3.chr5              41958138  0 + 159171411 I
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=300.000000
s hg38.chr3_KI270935v1_alt     25593 1 +    197351 G
s panTro4.chr3                654894 1 - 202329955 G
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199676229 1 + 202140232 G
i ponAbe2.chr3             C 0 C 0
e calJac3.chr5              41958138 0 + 159171411 I
e chlSab2.chr4              89574797 131 -  91010382 I
e papAnu2.chr6                 77952 0 + 174439528 C
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=408614.000000
s hg38.chr3_KI270935v1_alt     25594 607 +    197351 GGCATCCCGTCAACATCACAGTCCCAACCTTCCCACATGGAGAAGCTCATGGGACCCC-CGATGGACCAGGACAGTGCCAGCACTAAGACGTGCCCTGAAACTCACAGGAAGAGCGGACCAAGAAGCCGGGAACAGCACGGGGCACTGGGAGCTGCAAACGCCCACGATACTGTGAGAGACGGAGAAAGGTATGACAGGAGGAGCAGACCAAGAAGACGGGAACAGCACGGCGCACTGGGAGCTGCAAATGCCCACGATACCGTGAGAGATGGAGAAAGGTATGGCCATGGCGGTCacaaaatgttcctcaacatttattaaaggcctaaatggagaacataacgctatcaaacccttagctaaaaacacaggggaaaattcgtatggcctggggttaggcgaaaagttcttagacatgacaccaaaagcatgattcataa--gattgacaaattaaatttagtcataaatttaaaattataattctataaagcaatataaaaatccaaagagaatgaaacatgaactatggtctagaaataaacatttgtgaatcacacgtctcacaacctactggcacgcaggatatatgaagaaccatcaaaactta
s panTro4.chr3                654895 609 - 202329955 GGCATCCCGTCAACATCACAGTCCCAACCTTCCCACACGGACAAGCTCATGGGACCCC-CGATGGACCAGGACAGCGCCAGCACTAAGACGTGCCCTGGAACTCACAGGAAGAGCGGACCAAGAAGCCGGGAACAGCACGGGGCACTGGGAGCTGCAAACGCCCATGATACTGTGAAAGATGGAGAAAGGTATGACAGGAGGAGCGGACCAAGAAGACGGGAACAGCACGGCGCACTGGGAGCTGCAAATGCCCACGATACCGTGAGAGATGGAGAAAGGTATGGCCATGGCGGacacaaaatgttactcaacatttattaaaggcctaaatggagaacataacgctatcaaacccttaggtaaaaacacaggggaaaatttgtatggcctggggttaggcgaaaagttcttagacatgacaccaaaagcatgattcataaaagattgacaaattaaatgtagtcataaatttaaaattataattctataaagcaatataaaaatctaaagagaatgaaacacaaactatggtctagaaaaaaatatttgtgaatcacacatctcacaacgtactggcacgcagaatatatgaagaaccatcaaaactta
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199676230 518 + 202140232 GGCATCCCGTCAACATCACAGTCCCAACCTTCCCACACGGACAAGCTCATGGGACCCCGTGATGGACCAGGACAGCGCCAGCACTAAGACGTGCCCTGAAACTCACAGGAAGAGCGGACCAAGAAGACGGGAACAGCACGGGGCACTGCGAACTGCAAACGCCCACGATACT------------------------------------------------------------------------------------------GTGAGAGATGGAGAAAGGTACGGCcatagctgacacaaaatgttactcaacatttattaaaggcctaaatggagaacataacgctatcaaacccttaggtaaaaacac--gggaaaatttgtatggcctggggttaaatgaaaagttcttagacatgacaccaaaagcatgattcataaaagattgacaaattcaatttagtcataaatttaaaattataattctataaagcaatataaaaatctaaagagaatgaaacacaaattattgtttagaaaaaaacaattgcgaatcacacatttcagaaagtagtggcacgcagaatataagaagaaccatcaaaactta
i ponAbe2.chr3             C 0 C 0
s papAnu2.chr6                 77952 518 + 174439528 GGCATCCCGTCAACATCACAGTCCCGACTTCCCCACAC-GACAAGCCCATGGGACCCCCTGATGGACCAGGACAGCGTCAGCACTAAGACACGCCCTGAAACTCACAGAAAGAGCGGACCAAGACGACGGGAACTGCACAGGGCACTGAGAGCTGCAGACACCCAAGATACT------------------------------------------------------------------------------------------GTCAGAGACGGAAAAAGGTATGGCCGTGGCTGACACAAAATGTTACTCAACATTTATCACAGGCCTAAATGGAGAACATAACACTATAAAACCATTAGAtaaaaacacaggggaaaattTGTATGGCCTGGGGTTAGGTGAAAagttcttagacatgacaccaaagGCATGATTCATAGAAGATTGACaaattaaatttagtcat-aatttaaaattataattctataaagcaatataaaaatcttaaaagaatgaaatgcaAACTATGggctagaaaaaaatattggttAATCACACATCTCACAATGTACTGGCACGCAGAATATACGAAGAACCGTCAAAACTTA
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89574928 519 -  91010382 GGCATCCCGTCAACATCACAGTCCCGACTTTCCCGCACGGAGAAGCCCATGGGACCCCCTGATGGACCAGGACAGCGTCAGCACTAAGACACGCCCTGAAACTCACAGAAAGAGCGGACCAAGAAGACGGGAACTGCACGGGGCACTGAGAGCTGCAAACACCCAAGATACT------------------------------------------------------------------------------------------GTCAGAGACGGAAAAAGGTATGGCCGTGGctgacacaaaatgttactcaacatttatcacaggcctaaatggagaacataacactataaaaccattagataaaaacacaggggaaaatttgtatggcctggggttaggtgaaaagttcttagacatgacaccaaaggcatgattcatagaagattgacaaattaaatttagtcat-aatttaaaattataattctataaagcaatataaaaatcttaaaagaatgaaatgcaaactatgggctagaaaaaaatattggttaatcacacatctcacaatgtactggcacgcagaatatacgaagaaccgtcaaaactta
i chlSab2.chr4             I 131 I 16
e calJac3.chr5              41958138   0 + 159171411 I
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=37949.000000
s hg38.chr3_KI270935v1_alt     26201 85 +    197351 accataagaaagtaaaaaccccagtattaaagagagggccaatattggaacggaggcctcatcaaagaaggtataaggagggcat
s panTro4.chr3                655504 85 - 202329955 accataagaaagtaaaaaccccagtattaaagagagggcaaatatttgaatggaggcctcatcaaagaaggtataaggagggcat
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199676748 84 + 202140232 actataagaaattaaaaaccccagtcttaaagagagggcaaatatc-gaaaggagtcttcatcaaagtacgtaaaaggagggcaT
i ponAbe2.chr3             C 0 M 917
s papAnu2.chr6                 78470 85 + 174439528 ACCATAAGAAAGTAAAAACCCCAGTATTAAAGAGAAGGCAAATATTTTAATGGAGCCCTCATCAAGGAAGGTATAAGGAGGGCAT
i papAnu2.chr6             C 0 C 0
e calJac3.chr5              41958138  0 + 159171411 I
e chlSab2.chr4              89575447 16 -  91010382 I
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=242819.000000
s hg38.chr3_KI270935v1_alt     26286 1007 +    197351 attgcccgagaaagaggctcaacatcatagagatgctggagaaatgccagtcagcagtacctctgcaaatccattaaaatggctaaaaacagacaaaacccatgggccaacccaggttctagtgatgatgcagaggaactgggaccctcataagctgcagtgggaatgggaggggtcccgccatgctggaaagtggtcctggagtttcttacgaagttaagcacatccttaccatgtcatccagcaaccccactgctgaaatgtcccccaagggaaaacttaaacgtgcacacacaaacctgcacacaagtgtttaggcctcattcctcattgccaataactggaagaaaacaaaatgtccgtcggcaggagcaggagaaggcgtgaactaacgcggatgcttccacacagggggcaccaaccagcagtggaaagatgcaccc-aaatgccccaggtctcccaggctacatgcccgttgaaggaagctagtttcggtgggcacaggccaaaggatgccaacacatgacatcttggagaagacagtg-taccgtgtcggggagcagggcagtggtttcgaggggctacgggtggagggGCGAATGGAGGAGCTCTCTGGGGCGATGGCGTGAGCACCTGCACCTCACTGTGGGCTGCTGCGGCTGAGGGGCTGGTACGGCAAACACTGGCTTCAGTACATGCAGACTGAAGGAGGAAGGCTCCCACAACTCAGAGACAGAGGGTGTCGCCTCCATGAAACAAAAACATATTTTAAAAAAAAACCTCTTAAAATTAAGAAAAAAACCACAAAAAGTATTTCATAAGCGCATT-GACTTTGAGTTGACACAATCTACCTGGGAGCATGGAACTGAAACCACAGGCTTGGCAATCCCGGAGGGAGAGGGTGGAGGGTTTAGACCTCAATTGAAGGGCTCAGTACCTGGCTATAGGAAATAAC--ATTTAAAAAGCAGCAGGGTGGAAATAATTTCTGCTGATGAGGTTGCATCTCT
s panTro4.chr3                655589 1004 - 202329955 attgcccgagaaagaggctcaacatcatagagatgctggagaaatgccagtcagcagtacctctacaaatctattaaaatggctaaaaacagacaagaaccatgggccgacccaggttctagtgatgatgcagaggaactgggaccctcataagctgcagtgggaatgggaggggtcccgccatgctggaaagtggtccgggagtttcttacgaagttaagcacatccttaccatgtcatccagcaaccccactcctgaaacgtcccccaagcgaaaacttaaacgtgcacacacaatcctgtacacaagtgtttaggcctcattcctcattgccaataactggaagaaaacaaaatgtccatcggcaggagctggagaaggtgtgaaccaacgcggatgcttccacataggggacaccaaccagcagtggaaagatgcaccc-aaatgcgccaggtctcccaggctacatgcccggtgaaggaagctagtttcggtgggcacaggccaaaggatgccaacacatgacatcttggagaagacagtg-taccgtgtcggggagcagggcagtggtttcgaggggttacaggtggagggGCGAATGGAGGAGCTCTCTGGGGCGATGGCGTGAGCACCTGCACCTCACTGTGGGCTGCTGCGGCTGAGGGGCTG-TACAGCAAACACTGGCTTCAGTACATGCAGACTGAAGGAGGAAGGCTCCCACAACTCAGAGACAGAGGGTGTCGCCTCCATGAAACAAAAACATATTTTAAAAAAAAACCTCTTAAAATTAAGAAAAAA-CCACAAAAAGTATTTCATAAGCACATT-GACTTTGAGTTGACATAATCTACCTGGGAGCATGGAACTGAAACCACAGGCTTGGCAATCCCGGAGGGAGAGGGTGGAGGGTTTAGACCTCAATTGAAGGGCTCAGTACCTGGCTATAGGAAATAAC--ATTTAAAAAGCAGCAGG-TGGAAATAATTTCTGCTGATGAGGTTGCATCTCA
i panTro4.chr3             C 0 C 0
s papAnu2.chr6                 78555  982 + 174439528 ATTGCCCGAGAAAGAGGCTCAACATCATAGAGATGCTGGAGAAATGCCAGTCAACAGTACCTCTGCAAAtctattaaaatggctaaaaacagacaaaaaccacgGGCCAACCCAGCTTCTAGTGACGATGCAGAGGAATCGGGACCCTCATAAGCGGCAGTGGGAATGGGAGGGATCCCGCCATGCTGGAACGTGGTCCGGGAGTTTCTTATTGAGTTAAGCACATCCTTACCACGTcatccagcaaccccactcctGAAATTTCCCCCAAGAGAAAACTTAAATGTGCACACACAAACCTGCACTCAAGTGTTTAGGCCTCATTGCTCATTGCCAATaactggaagaaaacaaattgtCCATCGGCA------GGAGAAGGCATGAACCAGCGCGGATGCTTCCACACAGGGGGCACCAACCACCAGTGGAAACATGCACCCAAAATGCCCCAGGTCTCCCAGGCCACATGCCTGGTGAAGAAAGCTAGTTTTGGTGGGCACAGGTCAAAGGATGCCGCCACATGACACCTTGGAGAAGACAGTGCTACCGTGTTGGGAAGCAGGGCAGTGGTTTCGAGGGGCTACGGGTGGAGGGGCAAATGGAGGCGCTCTCTGGGGCAAAGGC-TGAGCACCTGCACCTCACCATGG---GCTGCGGCTGAGAGGCTG-TACAGCAGACACTGGCTTCAGTACATGCAGACTGAAGGAGGAAGGCGCCCACAAGTCAAAGACAGAGGGTGTCACCTCcatgaaacaaaaacattaaaaaaaaaaaaaccttctaaaATT-----------------AAGTATTTCTTAAGCACGTTGGACTTTGAGTTGACACAATCTGCCTGGGAGCATGGAAC--AAACCACTGGCTTGGCGACCCCGGAGGGAGAGGGTGGAGGGTTTAGACCTCAATTGAAGGGCTCAGTACCTGGCTATAGGAAATAACAGATTTCAAAAGTGGCAGGGAGGAAATAATTTCTGCTGATGAGGTTGCATTTCC
i papAnu2.chr6             C 0 C 0
e calJac3.chr5              41958138    0 + 159171411 I
e chlSab2.chr4              89575447   16 -  91010382 I
e ponAbe2.chr3             199676832  917 + 202140232 M
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=16480.000000
s hg38.chr3_KI270935v1_alt     27293 31 +    197351 CCAGATAGCCGGCAGAGTAAATTAAAGCAAT
s panTro4.chr3                656593 31 - 202329955 CCAGATAGCCGGCAGAGTAAATTAAAGCAat
i panTro4.chr3             C 0 C 0
s papAnu2.chr6                 79537 31 + 174439528 CCAGATAGCTGGCAGAGTAACTTAAAGCAAT
i papAnu2.chr6             C 0 N 0
s chlSab2.chr4              89575463 31 -  91010382 CCAGATAGCTGGCAGAGTAAATTAAAGCAAT
i chlSab2.chr4             I 16 C 0
e calJac3.chr5              41958138  0 + 159171411 I
e ponAbe2.chr3             199676832 917 + 202140232 M
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=499.000000
s hg38.chr3_KI270935v1_alt     27324 2 +    197351 AT
s panTro4.chr3                656624 2 - 202329955 ag
i panTro4.chr3             C 0 C 0
s macFas5.chr6             180254804 2 - 181584905 ac
i macFas5.chr6             N 0 C 0
s papAnu2.chr6             173133330 2 - 174439528 ac
i papAnu2.chr6             N 0 C 0
s chlSab2.chr4              89575494 2 -  91010382 AT
i chlSab2.chr4             C 0 I 12032
e calJac3.chr5              41958138 0 + 159171411 I
e ponAbe2.chr3             199676832 917 + 202140232 M
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=18084.000000
s hg38.chr3_KI270935v1_alt     27326 61 +    197351 agtcttgctctgttgcccaggctggagtgaagtggcgccatctccgctcactgtaagctcc
s panTro4.chr3                656626 61 - 202329955 agtcttgctctgttgcccaggctggagtgaanngnnnccntctccgctcactgtaagctcc
i panTro4.chr3             C 0 C 0
s macFas5.chr6             180254806 52 - 181584905 agtcttgctctgttgcccaggctggagggcagtggcgtgatctccgctgtcc---------
i macFas5.chr6             C 0 C 0
s papAnu2.chr6             173133332 52 - 174439528 agtcttgctctgttgcccaggctggagggcagtggtgtgatcttggctgtcc---------
i papAnu2.chr6             C 0 C 0
e calJac3.chr5              41958138  0 + 159171411 I
e chlSab2.chr4              89575496 12032 -  91010382 I
e ponAbe2.chr3             199676832 917 + 202140232 M
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=115316.000000
s hg38.chr3_KI270935v1_alt     27387 97 +    197351 gcgggagaatctcttgaaccctggaggcagaggttgcggtgagccgagatcccgccattccactccagcctgggcaacaagagcgaaactccgtctc
s panTro4.chr3                656687 97 - 202329955 gcgggagaatctcttgaaccctggaggcagaggttgcggtgagccgagatcccgccattccactccagcctgggcaacaagagcgaaactccgtctc
i panTro4.chr3             C 0 C 0
s macFas5.chr6             180254858 97 - 181584905 gcgggagaatctcttgaaccctggaggtggaggttgcagtgagctgagatcgcaccattgcactccagcctgggcaacaagagcgaaactccatttc
i macFas5.chr6             C 0 C 0
s papAnu2.chr6             173133384 97 - 174439528 gtgggaaaatctcttgaaccctggaggcggaggttgcagtgagctgagatcgcaccattgcactccagcctgggcaacaagagcgaaactccatttc
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89587528 97 -  91010382 gcgggaaaatctcttgaaccctggaggcggaggttgcagtaagctgagatcgcaccattgcactccagcctgggcaacaagagtgaaactccatttc
i chlSab2.chr4             I 12032 C 0
s calJac3.chr2                136482 96 - 204313951 gcaggagaatctcttgaaccctggaggtggaggttatagtgacacaagatcatgccattgcactccagcct-tgcaacaagagctaaactccatctc
i calJac3.chr2             T 47777 C 0
e ponAbe2.chr3             199676832 917 + 202140232 M
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=1911.000000
s hg38.chr3_KI270935v1_alt     27484 1 +    197351 a
s panTro4.chr3                656784 1 - 202329955 a
i panTro4.chr3             C 0 C 0
s macFas5.chr6             180254955 1 - 181584905 a
i macFas5.chr6             C 0 I 5
s papAnu2.chr6             173133481 1 - 174439528 a
i papAnu2.chr6             C 0 I 5
s chlSab2.chr4              89587625 1 -  91010382 a
i chlSab2.chr4             C 0 I 5
s calJac3.chr2                136578 1 - 204313951 a
i calJac3.chr2             C 0 I 5
s canFam3.chr34             30158491 1 -  42124431 A
i canFam3.chr34            N 0 C 0
e ponAbe2.chr3             199676832 917 + 202140232 M
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=86666.000000
s hg38.chr3_KI270935v1_alt     27485 66 +    197351 aaccaaacaaaaT-------TAGGTAACTAACCCAGGACTA--AAACAGCGTAACTTTAAAAAAATAAGTCTAGG
s panTro4.chr3                656785 66 - 202329955 aaccaaacaaaaT-------TAGGTAACTAACCCAGGACTA--AAACAGCGTAACTTTAAAAAAATAAGTCTAGG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199677762 64 + 202140232 AACCAAACAAAAT-------TAGATAACTAACCCAGGACTA--AAACAGCGTAACTT--AAAAAAAAAGTCTAGG
i ponAbe2.chr3             M 917 C 0
s macFas5.chr6             180254961 67 - 181584905 aacaaaacaaaaT---TAGATAGATAACTCACCCAGCACCA--AAACTGCATAACT---AAAAAAAATGTCTAGG
i macFas5.chr6             I 5 C 0
s papAnu2.chr6             173133487 69 - 174439528 aacaaaacaaaat---tagatagATAACTCACCCAGCACCA--AAACTgcataacta-aaaaaaaaaagtctagg
i papAnu2.chr6             I 5 C 0
s chlSab2.chr4              89587631 67 -  91010382 aacaaaacaaaaT---TAGATAGATAACTAACCCAGCACCA--AAACTGCATAACT---AAAAAAAAAGTCTAGG
i chlSab2.chr4             I 5 C 0
s calJac3.chr2                136584 72 - 204313951 aacaaaacaaaacaaaaAAATAGATAACTAACCTAGGACCA--AAACTGCATAACTTT-CAAAAAAATGTCTAGG
i calJac3.chr2             I 5 C 0
s canFam3.chr34             30158492 62 -  42124431 GACAATAAAAAAT-----------TAAGTCATCTGAAAGTACTCAACTGCAAACCTC--TCAAGGTAAGTCTGCA
i canFam3.chr34            C 0 C 0
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=796860.000000
s hg38.chr3_KI270935v1_alt     27551 434 +    197351 AGGTATGatgttcattccctgcaagccaataaaggtcac--------------gtctgggg---cataca--tctaaaaaaa------taatcctaaagaga---aagttatggtcacaaatatgttctgtatggtg----ttattaagagcaaaaa-tgggaaacaacccaaatatcagtaaaatgggactgAAC-CCTTG-------CAAATTTACTAAAATAA-----------AATTGT-----T---AAACATGATGCA---------------------------------CAAGACGAAGATTTTAA-------TAAAGTGAAAAGACAGGAAACATAC----TTACTAATGATTATTGGTTTATTTTTCATGCCACTTCATTCCACAAAAAGATTTCAGATATCTTAGAAAAAGACACACTAGAAATATTAAAATACTATCTGAACCAGAAGCAGAATCAGGGTAAGCTAGCAGAAAGGCGTATGAGCCAAAGGGATCTACCCAGCTTTCAAAGCTGACCAC-ggccgtgc
s panTro4.chr3                656851 439 - 202329955 AGGTATGatgttcattccctgcaagccaataaaggccac--------------gtctgggg---cataca--tctaaaaaaa------taatcctaaagaga---aagttatggtcacaaatatgttctgtatggtg----ttattaagagcaaaaa-tgggaaacaacccaaatatcaataaaatgggactggAC-CCTTG-------CAAATTTACTAAAATAACTC------AAAATTGT-----T---AAACGTGATGCA---------------------------------TAAGACGAAGATTTTAA-------TAAAGTGAAAAGACAGGAAACATAA----TTACTAATGATTATTGGTTTATTTTTCATGCCACTTCATTCCACAAAAAGATTTCAGATATCTTACAAAAAGACACACTAGAAATATTAAAATACTATCTGAACCAGAAGCAGAATCAGGGTAAGCTAGCAGAAAGGCGTATAAGCCAAAGGGATCTACCCAGCTTTCAAAGCTGGCCAC-ggccatgc
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199677826 442 + 202140232 AGGTATTatgttcattccccgcaagccaatagaggccac--------------gtctgggg---cataca--tttaaaaaaa------agatccttaagata---aagttatggtcacaaatatgttgtgtacggtg----ttattaagagcaaaaa-tgggaaacaacccaaatatcaataaaatgggactgAAC-CCTTG-------CAAATTTACTAAAATAACTG------AAAATTGT-----T---AAAC---ATGCA---------------------------------CAAGACGAAGATTTTTA-ATAATTTAAAGTGAAAAGACAGGAAACATAA----TTACTAATGATTATTGGTTTATTTTTCATGCCACTTCATTCCACAAAAATATTTCAGACACCTTAGAAAAAGACACATTAGAAATATTAAAATACTATCTGAACCAGAAGCAAAATCAGGGTAAGGTAGCAGACAGGCGTATAAGCCAAAGGGATCTACCCAGCTTTCAAAGCTGACCAC-ggccgtgc
i ponAbe2.chr3             C 0 C 0
s macFas5.chr6             180255028 448 - 181584905 AGGTACTatgtccattccctgcaagccaataaaggccac--------------gtctgggg---cataca--tccaagaaaa------taatcctaaagatg---aagttacggtcacaaatatgttctgtacggtgttatttattaagagtaaaaa-tgggaaacaacccaaatatcaataaaatgggactgAAC-CATTG-------CAAATTTACTAAAATAACTC------AACATTGT-----T---AAACATCTCGCA---------------------------------TAAGAGAAAGATTTTAA--TAATTTAAAGTGAAAAGACAGGAAACAAAA----TTGCTAATGATTATTGGTTTATTTTTCATGCCACTTCATTCCACAAAAAGATTTCAGATATCTTACAAAAAGACACACTAGAAATATTAAAATACTCTCTGAACCTGAAGCAAAATCAGGGTAAGCTAGCAGAAAGGCGTATAAGCCAAAGGGATCTACGCATCTTTAAAAGCTGACCAC-ggccctgc
i macFas5.chr6             C 0 C 0
s papAnu2.chr6             173133556 443 - 174439528 agGTACTATGTCCATTCCCTGCAAGCCAATAAAGGCCAC--------------GTCTGGGG---CATACA--TCCAAGAAAA------TAATCCTAAAGATG---AAGTTACGGTCACAAATATGTTCTGTACGGTGTTATTTATTAagagtaaaaa-tgggaaacaaccCGAATATCAATAAAATGGGACTGAAC-CATTG-------CAAATTTACTAAAAT-----------AACATTGT-----T---AAACATCTCGCA---------------------------------TAAGAGaaagattttaa--taatttaaagtgaaaagacaggaaacaaaa----tTACTAATgattattggtttatttttcatgCCACTTCATTCCACAAAAAGATTTCAGATATCTTACAAAAAGACAcactagaaatattaaaatactctCTGAACCTGAAGCAAAATCAGGGTAAGCTAGCAGAAAGGCGTATAAGCCAAAGGGATCTACGCATCTTTAAAAGCTGACCAC-GGCCCTGC
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89587698 443 -  91010382 AGGTACTatgtccattccctgcaagccaataaaggccac--------------gtctgggg---cataca--tccaagaaaa------taatcctaaagatg---aagttacggtcacaaatatgttttgtacggtgttatttattaagagtaaaaa-tgggaaacaacccaaatatcaataaaatgggactgAAC-CATTG-------CAAATTTACTAAAAT-----------AACATTGT-----T---AAACATCTCGCA---------------------------------TAAGAGAAAGATTTTAA--TAATTTAAAGTGAAAAGACAGGAAACAAAA----TTACTAATGATTATTGGTTTATTTTTCATGCCACTTCATTCCACAAAAAGATTTCAGATATCTTACAAAAAGACATACTAGAAATATTAAAATGCTCTCTGAACCTGAAGCAAAATCAGGGTAAGCTAGCAGAAAGGCGTATAAGCCAAAGGGATCTACGCACCTTTAAAAGCTGACCAC-ggccctgc
i chlSab2.chr4             C 0 C 0
s calJac3.chr2                136656 445 - 204313951 AGGCATTATGTTTATTAACTGCAAGccaataaatgccac--------------atctgggg---catgca--tctaaggaaa------taattctaaagata---aagttatggtcacagatatgttctttatggtgttatttattagcagcaaaaa-tggga---aacccaaatatcaacaaaatgggactgAAT-CATTG-------AAAACTTACTAAAATAACTC------AAAACAGT-----TAAAAAACATTATGTA---------------------------------CAATAGGAAGATTTTAA--TACTTTAAAGTGAAAAGGCAGGAAACAGAA----TTACTAATGATTATTGGTTTAATTTTCATGCCACTTCATTCCACAAAAAGATCTCAGGTATTTTACAAAACGACACACTAGAAAAATTAAAACACTATCCGAACCAGAAGCAAAATCAGGGTAAGCTGGCAGAAAGTCGTATAAGCCAAAGGGAT---CGCAGCTTTCAAAGCTGACCCA-ggcggcgc
i calJac3.chr2             C 0 C 0
s mm10.chr13                46070485 415 - 120421639 AGCTGTCATATTTATTTCCTCTGCACCAACAACATCCAT--------------TTTGGGGT---TATAAAG-TTCAAGGAAA------TAATTCAAAATATA---AAGTGTTGTGCATGAATATATTCCATATTTCCTTATTTATTAATAAAAAAAC-AAAGA---------------AATAAAATGGGAACGGTT-CATTG-------TAAACTT----AAACAATTC------AAAATAATGGTCAT---AAAGATTGTGCAC--------------------------------CAAGAGGAAAACCTTAATCTAATATTAACTGAAAATTCAGGAAAC--AA----TTAC----GATTATTGGTTTACTTTTTATGCTATTTAATTCCAC-CGAACATTTCAGCTAT-----------ACTCACTAGAAAAATAGAAAAACTATCTGAAAGTGA--TCAAATGAGAGCGCGTTTGCAATATGGGATGCTAGCCAC---GATCTAAGCAGCTTTC-AGGATGACAACAGGCCGGGC
i mm10.chr13               N 0 I 218
s canFam3.chr34             30158554 502 -  42124431 AAGAAGAGTGCTCATTTCCTCCAAGCCAGTAAAGTCCACTTGGAGGACACTGGGCCTGAGGAAACATACAATTCCAAGAAAAGCAACCTAATCGTAAATAAAGACAAATTATA--CATGGTTAGAGTCTTCACAGGCTTCTTTAGTATTGGCAAAGATTTGGAAACCACCTAAACATCAATAAAATAGGAGTGGATGGATTGTCATAAACTAACTCATTAAAATAATTCTAAGATTACATTGC-----A---CACAGCTGTGCACCTATAAGCTGCATAGCACTGGATTAGGAGGATTAGGAGGAAGATCGTAA--TAATACAACACG-AAACACAGGAAAGTGAAAACGGTACTTACAACTCTTGGTTTCTTTCCCATGCCACTCAGTCCCAC-AAAAGAATCCGGGTACCTTACATAAGCACGCCCCAAAGGAA---AGACGCTCGGTGGACCAGCGGCGAGGTC-------GCGCGCGTCAGGGAGGACAAGC------------CCCGGTCGCCGACCCTCACCGA-GTCACCGG
i canFam3.chr34            C 0 C 0
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=400119.000000
s hg38.chr3_KI270935v1_alt     27985 251 +    197351 gcagtggctctgtctgtaatctccgcacttggggaggccgaggaggtaggatcgcttgaggccacaagttcgagaccagcctgggcaacagagcaagatcccgcctctaccaaaaatttaaaaatcagccggAAGCCAGACACTAGGGACATGGCTGAGGATCGCTCCCGC--CCCTCGGAGGCCAGAAACCGAGGGTCACTCCCGCTCTCTAGAGGCCGGAGGCCCCGGGCCGCTCCCGCCCACCTCCGCGG
s panTro4.chr3                657290 251 - 202329955 gcagtggctctgtctgtaatccccgcacttggggaggccgaggagggaggatcgcttgaggccacaagttcgagaccagcctgggcaacagagcaagatcccgcctctaccaaaaatttaaaaatcagccggAAGCCAGAGGCTAGGGACATGGCTGAGGATCGCTCCCGC--CCCTCGGAGGCCGGAAACGGAGGGTCACTCCCGCTCCCTAGAGGCCGGAGGTCCCGGGCCGCTCCCGCCCACCTCCGCGG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199678268 251 + 202140232 gcagtggctatgtctgtaatctccgcacttggggaggccgaggagggaggatcacttgaggccagaagttcgagaccagcctgggcaac--agcaagatcccgcctctacaaaaaatttaaaaatcagccggAAGCCAGAGGCTGGGGACATGGCTGAGGATCGCTCCCCCCTCCCTCGGAGGCCGGAAACCGACGGTCACTCCCGCTCACTAGAGGCCGGAGGCCCCGGGCCGCTCCCGCCCACCTCCGCGG
i ponAbe2.chr3             C 0 C 0
s macFas5.chr6             180255476 251 - 181584905 gcggtggctccgcccctaatccccgcacttggggaggccgaggagggaggatcgcttgaggccaagagtttgagaccagcccgggcaacacagcaagatcccgccactgcaaaaaatttaaaaattagccggAAGCCAGAAGCTAGGGACATGGCTGAGGATCGCTCCCGC--CCCTCGGAGGCCGGAGACCGAGGGTCACTCCCGCTCAGTAGAGGCCGGAGGCCCCGGGTCGCTCCCGCCCACCTCCGCGG
i macFas5.chr6             C 0 C 0
s papAnu2.chr6             173133999 251 - 174439528 GCGGTGGCTCCGCCCCTAATCCccgcacttggggaggccgaggaaggaggatcgcttgaggccaagagtttgagaccagcccgggcaacacagcaagatcccgccactacaaaaaatttaaaaattagccggaagcCAGACGCTAGGGACATGGCTGAGGATCGCTCCCGC--CCCTCGGAGGCCGGAGACCGAGGGTCACTCCCGCTCAGTAGAGGCCGGAGGCCCCGGGTCGCTCCCGCCCACCTCCGCGG
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89588141 251 -  91010382 gcggtggctccgcccctaatccccgcacttggggaggccgaggagggaggatcgcttgaggccaagagttcgagaccagcccgggcaacacagcaagatcccgccactacaaaaaaattaaaaattagccggAAGCCAGAAGCTAGGGACATGGCTGAGGATCGCTCCCGC--CCCTCGGAGGCCGGAGACCGAGGGTCACTCCCGCTCAGTAGAGGCCGGAGGCCCCGGGTCGCTCCCGCCCACCTCCGCGG
i chlSab2.chr4             C 0 C 0
s calJac3.chr2                137101 245 - 204313951 gctgtggctccgcccgtaatc-ccacatgttaggaggcagaggagggaggatcgcttgaggccaagagttcgagacc-----gggcaacaaagcgagagcccgcctctacaaaaaatttaaaaattagccggAAGCCAGAGGCTGGGGACATGAATGAGGGTGACTCCCAC--CCCTCCGAGGCCGGAGGCCGAGGGTCACTCCCGCTCACTAGAGGCCGGAGGCCCAAGGCAGCTCCCGCCCAACCCCGCGG
i calJac3.chr2             C 0 C 0
s canFam3.chr34             30159056 133 -  42124431 CCCGTGTCCACCGCCGCGGCCCCCGCA---GGGTGGACCGGAGCG------------------------------CCCGCCCGG-----------------CGCCCTGAC--------------CTACTCCGACCCCTGA--------------------------CCCAC--CCCTAGTCCGCCCGA---------------CTTTTCCCT---------AGGCCCTGACCTACCCCTGGCCCCCCAC----
i canFam3.chr34            C 0 C 0
e mm10.chr13                46070900 218 - 120421639 I
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=1273153.000000
s hg38.chr3_KI270935v1_alt     28236 742 +    197351 ACGAGCGCCGCCCCTTCGACCCCATTCCCTGAGGTCTGGACGTTCAGGCCCTCTCGGTCTGGGAGATCCCGGAgaaccacccacg--gggctttaaaaaatgttggtgccCAACATCTCCCCGAAATAGGGC---------------CCGCCCTATCTCGGTCGGGGAGCGCGGGACCTCCGTGG--CCACCCAGCGCCACCGTCCGCGGGTCCGCTTTGCGCAGGCGCGGCGTCCCCGCCCATTAGACCCCTGCCC-GGGCGTGTCGTGGTGCGCAGGCGCGATGTCCCCCACTAGCGCCCCGC---------------------------------------CTTGACCCGGCCGTGGTGCGCAGG----------------------------------------------CGCAGTCTG-CGCAGGGACTGGCGGGACTGCGCGGCGGCGACTACAGACGTGTCGGGGGTCCGGGGCCTGTCGCGGTTGCCAAGCGCTCGGCGCTTGGCGCTGGCGCTGGCCAAGGCGGTGAGTCCCTGCCgcggac-----cggggcagggcaggcggggggcgaggcggcggtaggagcgggacggtccccagcgggtccgagcgga-gcgggcgccgggT--------GCCCGCGCCCCCTGC----CCGGGGATCGGGAAGGGGCTGGGAGAGCCCTGGGCCGGTGCGAGGGGGA----GCCGCGGAGTG----TACTCGGGGGCCTGGGGAGCTCGGTCCTTAGCAGGT----AGGCCGCGTCCCGGTGAAGGTCGCGACCCCGCGGGCTTGCT------GGGCGTCCCCTCCGCCGCTTTGG-TCCGGGCCTGGGGTCCGGCGACCTCGCGGGCTGAGGTAGCC-C
s panTro4.chr3                657541 743 - 202329955 ACGAGCGCCGCCCCTTCGACCCCATTCCCTGCAGTCTGGACGTTCAGGCCCTCTCGGTCTGGGAGATCCCGGAGAACCACCCACG--GGGCTTTAAAAAATGTTGGTGCCCAACACCTCCCCGAAATAGGGC---------------CCGCCCTATCTCTGTCGGGGAGCGCGGGACCTCCGTGT--CCACCCAGCGCCACCGTCCGCGGGTCCGCTTTGCGCAGGCTCGGCGTCCCCGCCCCATAGACCCCGGCCC-GGGCGTGTCGTGGTGCGCAGGCGCGATGTTCCCCACTAGCGCCCCTCT--------------------------------------CTTGACCCGGGCGTGGTGCGCAGG----------------------------------------------CGCAGTCTG-CGCAGGGACTGGCGGGACTGCGCGGAGGCGACTACAGACGTGTCGGGGGTCCGGGGCCTGTCGTGGCTGCTAAGCGCTCGGCGCCTGGCGCTGGCGCTGGCCAAGGCGGTGAGTCCCTGCCgcggac-----cggggcagggcaggcggggggcgaggcggcagtaggagcgggacggtccccagcgggtccgagcgga-gcgggCGCCGGGT--------CCCCGCGCCCCCTGC----CCGGGGATCGGGAAGGGGCTGGGAGAGCCCTGGGCCGGTGCGAGGGGGA----GCCGCGGAGTG----TACTCGGGGGCCTGGGGAGCTCGGTCCTTAGCAGGT----AGGCCGCGTCCCGGTGAAGGTCGCGACCCCGCGGGCTTGCT------GGGCGTCCCCTCCGCCGCTTTGG-TCCGGGCCTGGGGTCCGGCGACCTCGCGGGCTGAGGTAGCC-C
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199678519 788 + 202140232 ATGAGCGCCGCCCCTTGGATCCCATTCCTTGTGGTCTGGACGTTCAGGCCCTCTCGGTCTGGGAGATCCCGGAgaaccacccacg--gggctttaaaaaatgttggtgcccaacacctccccgaaatAGGGC---------------CCGCCCTATCTCGGTCGGGGAGCGCAGGACCTCTGTGT--CCACCCAACGGCACCGTCCGCGGGTCCACTTTGCGCAGGCGCGGTGCCCCCGCCCCTTAGACCCTGGTCC-GGGCGTGGCGTCGTGCGCAGGCGCGGTGTCCCCCAATACCGCCCCCCC--------------------------------------CTTGACCCGGGCGTGGTGCGCGGGTCGAGTCTCCCCCCTCCCCCAGCTCTACCGGGGTGTGTTGCGCAGCCGCAGTCTG-CGCAGGGACTGGCGGGACTGCGCGGCGGCGACTACCGACATATCGGGGGTTCGGGGCCTGTCGCGCCTGCTAAGCGGTTGGCGC------CTGGCGCTGGCCAAGGCGGTGAGTCCCTGCggcggaccggggcggggcagggcaggtggggggcgaggcggcggtaggagcgggacggtccccagcgggtccgagcgga-gcgggCGCCGGGT--------CCCCGCGCCCCCTGC----CCGGGGATCGGGAAGGGGCTGGGAGAGCCCTGGGACGGTGCGAGGGGGA----GCCGCGTGGTG----TACTCGGGGGCCTGGGGAGCTCGGTCCTTAGCAGGT----AGTCCGCGTCCCGGTGAAGGTCACGACCCCGCGGGCTTGCT------GGGCGTCCCCTCCGCCGCTTTGG-TCCGGGCCTGGGGTCCGGCGACTTCGCGGGCTGAGGTAGCC-C
i ponAbe2.chr3             C 0 C 0
s macFas5.chr6             180255727 779 - 181584905 GCGAGCGCAGCCCCTCCGACCCCATTCCCTGTGGTCTGGACGTTCAGGTGCCCTCTGTCTGGGCGATCCCGCAGAACCACCCATG--GCGTTTT-AAAAATGTTAGTGCCCAACACCTCCCCAAAATAGGGC---------------CCGCTCTACCTCGGTCGGGGAGCCCAGGACCTCCGCGTCCCCCCTCAACGCCTCCGTCCGCGAGTCCGCTTTGCGCAGGCGCGGCGCCCCCACTCAG----CCCCCGCCC-GGGCGTGACGTAGTGCGCAGGCGCGATGTCCCCCACTACCGCCCCGCTCGACCCCGGCGTGGTGCGCAGGCGCGATATCCCCCTAGCGCGACCCCGGCGTGGTGCGCAGG----------------------------------------------CGCAGTCTG-CGCAGGGACTGGCGGGGCTGCGTGGCGGCGTCAACAGTCATGTCGGGGGTCCGGAGACTGTCGCGGCTGCTGAGCACTCGGCGC------CTGGCGCTGGCCAAGGCGGTCAGTCCGTACCGCGGAC-----CGGGGCGGGACAGGCGGGGGCCGAGGCGGCGGTAGGAGCGGGACGGTCCCCAGCGGGTGCGAGCGGA-Gcgggcgccgggtccccgcgcccccgcgcccccggt----ccggggATCGGGAAGGGGCTGGGAGAGCCCTGGGCCGGTGCGAGGCGGA----GCCGCGGGGCG----GACTCGGGGAACCGGGGAGCTCGGTCCTTAGCAGGT----AGTCCGCGTCCCGGTGAAGGTCACGACCCCGCGGGCTTGCT------GGTTGTCCGCTCTGCCGCCTTGG-TCCGGGCCT-GGGTCCGGGAACCCCGCGGGCTGAGGTGGCC-C
i macFas5.chr6             C 0 C 0
s papAnu2.chr6             173134250 730 - 174439528 ACGAGCGCAGCCCCTCCGACCCCATTCCCTGTGGTCTGGACGTTCAGGCCCCCTCGGTCTGGGCGATCCCGCAGAACCACCCACG--GCGCTTT-AAAAATGTTGGTGCCCAACACCTCCCCGAAATAGGTC---------------CCGCACTACCTCGGTTGGGGAGCCCAGGACCTCCGCGT-CCCCCTCAACGCCTCCGTCCGCGGGTCCGCTTTGCGCAGGCGCGGCGCCCCCACTCAG----CCCCCGCCC-GGGCGTGACGTGCTGCGCAGGCGCGATGTCCCCCACTACCGCCCCGCT----------------------------------------CGACCCCGGCGTGGTGCGCAGG----------------------------------------------CGCAGTCTG-CGCAGGGACTGGCGGGACTGCGTGGCGGCGTCAACAGTCATGTCGGGGGTCCGGGGGCTGTCGCGGCTGCTGAGCACTCGGCGC------CTGGCGCTGGTCAAGGCGGTCAGTCCGTACCGCGGAC-----CGGGGCGGGACAGGCGGGGGCCGAGGCGGCGGTAGGAGCGGGACGGTCCCCAGCGGGTGCGAGCGGA-GCGGGCGCCGGGT--------CCCCGCGCCCCCTGT----CCCGGAATCGGGAAGGGGCTGGGAGAGCCCTGGGCCGGTGCGAGGCGGA----GCCGCGGGGCG----GACTCGGGGAACCGGGGAGCTCGGTCCTTAGCAGGT----AGTCCGCGTCCCGGTGAAGGTCACGACCCTGCGGGCTTGCT------GGTCGTCCGCTCTGCCGCCTCGG-TCCGGGCCT-GGGTCCGGGGACCCCGCGGGCTGAGGTGGCC-C
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89588392 780 -  91010382 ACGAGCGCAGCCCCTCCGACCCCATTCCCTGTGGTCTGGACGTTCAGGCCCCCTCTGTCTGGGCGATCCCGCAGAACCACCCATG--GCGCTTT-AAAAATGTTAGTGCCCAACACCTCCCCGAAATAGGGC---------------CCGCTCTACCTCGCTCGGGAAGCCCAGGACCCCCGCGT-CCCTCGCAACGCCTCCGTCCGCGGGTGCGCTTTGCGCAGGCGCGGCGCCCCCACTCAGC--CCCCCCGCCC-GGGCGTGACGTAGTGCGCAGGCGCGATGTCCCCCACTACCGCCCCGCTCGACCCCGGCGTGGTGCGCAGGCGCGATATCCCCCTAGCGCGACCCCGGCGTGGTGCGCAGG----------------------------------------------CGTAGTCTG-CGCAGGGACTGGCGGGACTGCGTGGCGGCGTCAACAGTCATGTCGGGGGTCAGGAGgctgtcgcggctgctgagcactcggcgc------ctggcgctggcCAAGGCGGTCAGTCCGTACCgcggac-----cggggcgggacaggagggggccgaggcggcggtaggagcgggacggtccccagcggatgcgagcgga-gcgggcgccgggtccccgcggccccgcgcccccggt----cccgggATCGGGAAGGGGCTGGGAGAGCCCTGGGCCGGTGCGAGGGGGA----GCCGCGGGGCG----GACTCGGGGGACCGGGGAGCTCGGTCCTTAGCAGGT----AGTCCGCGTCCCGGTGAAGGTCACGACCCCGCGGGCTTGCT------GGTCGTCGCCTCTGCCGCCTTGG-TCCGGGCCT-GGGTCCGGGGACCCCGCGGGCTGAGGTGGCT-C
i chlSab2.chr4             C 0 C 0
s calJac3.chr2                137346 775 - 204313951 ACAAGCGCCGCCCCTCCGACCCCATTCCCTGAGGGCTGGACGTTCAGGCCCTCTCGATCTGGGCGATCCCGGAGAACCATCCACG--GGGCTTT-AAAAATGTTGGTGCCCGACACCTCCCCAGAACAGGGC---------------CCGCCCTACCTCAGTCCGAGAAAGCGGGACCTCGGTGT-CGCCCCCAGCGCCACCGTCCGCAAGTCCGCTTTGCGCAGGCGCGGCGCCCCCACTCAG----CCCCCGCCCAGGGTGTGGCGTGGTGCGCAGGCGCGACGTCCCCCGCGGCCGCCCAGCTGGACCCCGGCGTAGTACGCAGGCGCGGTATCCCCCCAGCGCGACCCCGGTGTGGTGCGCAGG----------------------------------------------CGCAGTCTG-CGCGGTGACTGGCGGGACAGTACGGCTG---CAACTGACATGTCGGGGGTCCGGAGGCTGTCACGGCTGCTGAGCGCCCAGCGC------CTGGCGCTGGCCAAGGCAGTGAGTCCGTGCCGCGGAC-----CGGGGCGGGGCAGGCAGGGGCCGAGGCAGCAGTAGGAGCGGGTCGGTCCACAGCGGGTCCGAGCGGA-TCGAGCGCCGGGT--------CCCCGCACCCCCTGC----CCGGGGATCCGGAAGGGGCTGAGAGAGCCCTGGGCCGGTGCGAGGGGGA----GCAgcggggcg----gacccgggggccggggggggTCAGTCCTTAGCAAGT----CGTCCGCCTCCCGGTGAAGGTCACGACCCCACGGGC-TGCTCGGCCCGGGGGTCCCCTCCGCCGCACTGG-TCCGGGCCTGGGGTCCGGGGACCCCGCGGGCTGAGGTAGCCAC
i calJac3.chr2             C 0 C 0
s mm10.chr13                46071118 526 - 120421639 GCGATCTCCGCCCC-AGGACCCTACTTCCATCTCTCCAGATCATCCGACCCTCTCTGTTTTGGCAAAC---AAGAACCACCCGAGAAGCACTTT-AAAGACATTGGCACCTCACTTACCCCTGGAGCAGAGCCCATCAGCGTTGCTGCCACCCTACCTCAGAC------------------GTGT----------TGCCACCGC---CGCGTTTACAGGGCGCAGGC---GCACCACCACTC------ACGCGAGCC-AGGAGGGGCGTGTTGCGCAGGCGCAGAATCTTCCAAGCCCGACACCCG--------------------------------------CGCGACTC------GGTGCGCAAG----------------------------------------------CGCAGTCTGTCGCTGGGGCTTGCGGGAAGG--------------CAGACATGGCCGGGGTTGGCGCAGTTTCGAGGCTTCTTCGCGGGCGGCGC------TTGGCGTTAACTGGGGCGGTGAGTTAGTGCCACGAAA-----TGGCA----------------------GGCGCTAGGAGT---------------------------------GCGCCACGA--------TTCCACCCGAGTTGG----CCTGAGTCTGGGAAGGTGCAG---------TGGGCCG---------------------------------------------------------------AAGC----CGACTGCTTTCCGGCGAAGGTCACGACCCCGAGGTC-----------G-------------------------CGGGCGTGGAGTCTGG---CCTT-----------------C
i mm10.chr13               I 218 C 0
s canFam3.chr34             30159189 598 -  42124431 -CGAACACCGCCC---------------------------------GGCCCCC--------------------GACTCACCCCCG--GGA-------------------------------------GGGGA---------------GCGCTCGG----------------------CTCCGGAT--GCCCTCAGCGGCACGGTCTGCGGACC--CTGTGCGCAGGCGCGATGCCCCCA---------CCGCGG----GGTCGCGGCGTGGTGCGCAGGCGCGGTGTCCCCGCGTCCTAGGCTGGG--------------------------------------CGCGACTA------GATGCGCAGG----------------------------------------------CGCAGTGTGGCGCGGGGGTTGGTGGGACAGCGCGGTGGAG--GACAGACATGTCGGGGGTCCGGGCGGTGTCTCGGCTGCTGGGCGCCCGGCGC------CTGGCGCTGACCAGAGCAGTGAGTCTTCGCCGCGGAG-----CGG-GCAGGGT--GCGGGGATCGAGGGG------GGCGCAGGACGGTCTCC-GCGGGCCCGAGCGGACGCGAGTgccccg---------ccccgccccgcccgcagggccccggccTGGGGAGGGTCTG---------CGGGCGGGTGCGGGGAGGAGGTCGCCGGAGGGTGGGGCGACCCGCAGGGCAGCGGG---CAGTTTCCAGGAGCCCGCGGGTCTGCGTCCCTGTGAAGGTCATGACCCCGCGTGCCGCCC------CGGGGACGCTTCCGCTGCCTGGGATCCAGGCCTGGGGGCCGGGGGCCTCGCGGGCTACGGTCGCT-C
i canFam3.chr34            C 0 I 431
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=107158.000000
s hg38.chr3_KI270935v1_alt     28978 59 +    197351 CTCGCCTC--TGCCTGGCGGGTGGACTCGGGGAGGAGTCGTGTCTGCCCAAGGTCACCGGG
s panTro4.chr3                658284 61 - 202329955 CTCGCCTCAGTGCCTGGCGGGTGGACTCGGGGAGGAGTCGTGTCTGCCCAAGGTCACCGGG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199679307 61 + 202140232 CTCGCCTCAGTGCCTGGCGGGTGGACTCGGGGAGGAGTCGTGTCTGCCGAAGGTCACCGGG
i ponAbe2.chr3             C 0 C 0
s macFas5.chr6             180256506 61 - 181584905 CTCGCCTCAGTGCCTGGCGGGTGGACTCGGGGAGGAGTCGTGTCTGCCCAAGGTCACTCGG
i macFas5.chr6             C 0 C 0
s papAnu2.chr6             173134980 61 - 174439528 CTCGCCTCAGTGCCTGGCGGGTGGACTCGGGGAGGAGTCGTGTCTGCCCAAGGTCACTCGG
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89589172 61 -  91010382 CTCGCCTCAGTGCCTGGCGGGTGGACTCGGGGAGGAGTCGTCTCTGCCCAAGGTCACCCGG
i chlSab2.chr4             C 0 I 20
s calJac3.chr2                138121 61 - 204313951 CCCGCCTCAGTGCCTGGCTCGTGGACTCGGGGAGGAGTGGTGTTTGCCCAAGGTCAACCGG
i calJac3.chr2             C 0 C 0
s mm10.chr13                46071644 38 - 120421639 CCCGTCT--------------TGGTCTAGCGAAG---------TTCTCCAAGGTTAAAGGG
i mm10.chr13               C 0 C 0
e canFam3.chr34             30159787 431 -  42124431 I
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=1882.000000
s hg38.chr3_KI270935v1_alt     29037 6 +    197351 GTGGAG
s panTro4.chr3                658345 6 - 202329955 GTGGAG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199679368 6 + 202140232 GTGGAG
i ponAbe2.chr3             C 0 C 0
s macFas5.chr6             180256567 6 - 181584905 GCGGAT
i macFas5.chr6             C 0 I 15
s papAnu2.chr6             173135041 6 - 174439528 GCGGAT
i papAnu2.chr6             C 0 I 15
s calJac3.chr2                138182 6 - 204313951 GCGTAT
i calJac3.chr2             C 0 I 15
s mm10.chr13                46071682 1 - 120421639 ----A-
i mm10.chr13               C 0 C 0
e canFam3.chr34             30159787 431 -  42124431 I
e chlSab2.chr4              89589233 20 -  91010382 I
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=136996.000000
s hg38.chr3_KI270935v1_alt     29043 101 +    197351 TCCTGGCTGGGCCGGGCCTCTGCCGCCCTCTGTGAGGGTTGTCCTGCGGGGCCGCCCGCAGCCCGTGGGTGGGGCCGGCGGGGCGGGTGAAACCGCCTGGG
s panTro4.chr3                658351 101 - 202329955 TCCTGGCTGGGCCCGGCCTCTGCCGCCCTCTGTGAGGGTTGTCCTGAGGGGCCGCCCGCAGCCCGTGTGTGGGGCTGGCGGGGCGGGTGAAACCGCCCGGG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199679374 101 + 202140232 CCCTGGCTGGGCCGGGAGTCTGAGGACCTCTGTGAGGGTTGTCCTGAGGGACCGCCCGCATCCGGTGGGTGGGGCTGGCGAGGCGGGTGAAACTGCCCGGG
i ponAbe2.chr3             C 0 C 0
s macFas5.chr6             180256588 101 - 181584905 TCCTGGCTGGGCTGGGCCTCTGCCGCCCTCTGTGCGGGTTGTCCCGAGGGGCCGCCCGCAGCCCGTGGGTGTGGCGGGCGGGGCGGGTGAAACCGCCCGGG
i macFas5.chr6             I 15 C 0
s papAnu2.chr6             173135062 101 - 174439528 TCCTGGTTGGGCTGGGCCTCTGCCGCCCTCTGTGCGGGTTGTCCCGAggggccgcccgcagcccgtgggtggggtgggcggggcgggtgaaaccgcccggg
i papAnu2.chr6             I 15 C 0
s chlSab2.chr4              89589253 101 -  91010382 TCCTGGCTGGGCTGGGCCTCTGCCGCCCTCTGTGCGGGTTGTCCCGAGGGGCTGCCCGCAGCCCGTGGGTGGGGCGGGCGGGGCGGGTGAAACCACCCGGA
i chlSab2.chr4             I 20 C 0
s calJac3.chr2                138203  75 - 204313951 CCCTGACTGGGCCGGGCCTCTGCCGCCTGTTGTGCTGGTTGTC---------------TGTCCCGCAGGTGGGGCGGACGGGGCGGGTGC-----------
i calJac3.chr2             I 15 C 0
s mm10.chr13                46071683  62 - 120421639 --------GGGACCGGCCTGTTGCATTCTGGATGCGGAC--------GGGTCTGCGAGTAATCCGTTGGTAGTCTGGG-----------------------
i mm10.chr13               C 0 C 0
e canFam3.chr34             30159787 431 -  42124431 I
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=170798.000000
s hg38.chr3_KI270935v1_alt     29144 108 +    197351 TGGGTGCGAGGAGTGGCCGGGCTCGGCCGGG-TGGGTGTCCGGTGGGAAGCGCGGCGCGCCCGAGCTTGGGCTTGCAGTTCCCCTTTCCAG-AGAGCGCAAATCTGTGCA
s panTro4.chr3                658452 108 - 202329955 TGGGTGCGAGGAGTGGCCGGGCTCGGCCGGG-TGGGTGTCCGGTGGGAAGCGCGGCGCGCCCGAGCTTGGGCTTGCAGTTCCCCTTTCCAG-AAAGCGCAAATCTGTGCA
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199679475 108 + 202140232 TGGATGCGAGGAGTGGCCGGGCTCGGCCGCG-TGGGCGTCCGGTGGGAAGCGCTGCGCGCCCGAGCTTGAGCTTGCAGTTCCCGTTTCCAG-AAAGCGCAAATCTGTGCA
i ponAbe2.chr3             C 0 C 0
s macFas5.chr6             180256689 108 - 181584905 TGGGTGCGAGGAGTGGCCGGGCTCGGCCA-G-TGGGCGGCCGGTGGGAAGAGCTGCGCGCCCGAGCTTAGGCTTGCAGTTCCGCTTTCCAGAAAAGCGCAAATCTGTGCG
i macFas5.chr6             C 0 C 0
s papAnu2.chr6             173135163 107 - 174439528 tgggtgCGAGGAGTGGCCGGGCTCGACCG-G-TGGGCGGCCGGTGGGAAGCGCTGCGCGCCCGAGCTTGGGCTTGCAGTTCCGCTTTCCAG-AAAGCACAAATCTGTGCG
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89589354 109 -  91010382 TGGGTGCGAGGAGTGGCCGGGCTAGGCCGCG-TGGGCGTCCGGTGGGAAGCGCTGCGCGCCCGAGCTTAGGCTTGCAGTTCCGCTTTCCAGAAAAGCGCAAATCTGTGCG
i chlSab2.chr4             C 0 C 0
s calJac3.chr2                138278  98 - 204313951 -----------AGTGGCCGGGCTCCACCCGGCCGGGCGTCGGGCGGGAAGCGCGGCGCGCCAGAGCTTGGGCCTGCAGTTCCCCTTTCCAG-AAAGCGCAAATCTGTGCA
i calJac3.chr2             C 0 C 0
e mm10.chr13                46071745   0 - 120421639 C
e canFam3.chr34             30159787 431 -  42124431 I
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=229345.000000
s hg38.chr3_KI270935v1_alt     29252 159 +    197351 TGTCCACTTCGGGATCTTGGAAGTTAAGGACCTGTACTTT----GGGTCCCGTTTGGTGGCCCTTGTGCCACAAA-AATGTGCCGGTGTTTAAAAGCAGCTGTGCCAGTTTTTAAAAATCAGACGGAGAGCTCAGGGCACTGACCGAGCGAGGACTCCAGGACC
s panTro4.chr3                658560 160 - 202329955 TGTCCACTTCGGGACCTTGGAAGTTAAGGACCTGTACTTT----GGGTCCTGTTTGGTGGCCCTTGTGCCACCAACAATGTGCCGGTGTTTAAAAGCAGCTGTGCCAGTTTTTAAAAATCAGACGGAGAGCTCAGGGCACTGACCGAGCGAGGACTTCAGGACC
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199679583 160 + 202140232 TGTCCACTTCGGGACCTTGTAAGCTAAGGGCCTCTACTTT----GGGTCCTGTTTGGTGGCCCTTGTGCCACCAAAAACGTGCCAGTGTTTAAAAGCAGCTGTGCCAGTTTTTAAAAATGAGACGGAGAGCTCAGGGCACTGACCGAGCGAGGACTCCAGGACC
i ponAbe2.chr3             C 0 C 0
s macFas5.chr6             180256797 159 - 181584905 TGTCCACTTCGCGACCTTGTAAGTTAAGGGTGTCAACTTT----GGGTCGTGTTTGGTGGCCCTTGTGCCACTGAAAATGTGTCGGTGTTTACAAGCAGCTGTGCCAGTTTTTAAAAATCAGACGGAGAGCTCAGCGCACTGACCGGGCGAGGACG-CGGGACC
i macFas5.chr6             C 0 C 0
s papAnu2.chr6             173135270 159 - 174439528 TGTCCACTTCGCGACCTTGTAAGTTAAGGGTGTCTACTTT----GGGTCGTGTTTGGTGGCCCTTGTGCCACTGAAAATGTGCCAGTGTTTAAAAGCAGctgtgccagtttttaaaaatcagacggAGAGCTCAGCGCACTGACCGGGCGAGGACG-CGGGACC
i papAnu2.chr6             C 0 I 9498
s chlSab2.chr4              89589463 159 -  91010382 TGTCCACTTCGCGACCTTGTAAGTTAAGGGTGTCAAGTTT----GGGTCGTGTTTGGTGGCCCTTGTGCCACTGAAAATGTGCCAGTGTTTAAAAGCAGCTGTGCCCGTTTTTAAAAATCAGAGGGAGAGCTCAGCGCACTGACCGGGCGAGGACG-CGGGACC
i chlSab2.chr4             C 0 C 0
s calJac3.chr2                138376 129 - 204313951 TGTCCACATGGAGACCTTGTAAGTGAAGGGCCTCTGCTTTGCGGGGGTGGTGTTTGGTGGCCCTTGTGC-----------------------------------GCAGTTTTTAAAAATCAGACCGAGAGCTCCGCGCACTGACCGGGCCAGGACGCCAGGACC
i calJac3.chr2             C 0 C 0
s mm10.chr13                46071745 113 - 120421639 TGTCGACACTAAGA-CTTATAAGTGATGAGCTTAC---------AGGTTTTGTGTAGTGGCCTT---------------------------------AGCTA---CTGTTTTTAAATATCAAAGAGATATTTGAAGAT----ACCAGGTGAGACTT-CTGCACC
i mm10.chr13               C 0 C 0
e canFam3.chr34             30159787 431 -  42124431 I
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=57818.000000
s hg38.chr3_KI270935v1_alt     29411 41 +    197351 TGTG----------CTTGCCTGTGCGC--TGAGTACCTCG-AGGGCCGGGCTCG
s panTro4.chr3                658720 41 - 202329955 TGTG----------CTTGCCTGTGCGC--TGAGTACCTCG-AGGGCCGGGCTGG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199679743 41 + 202140232 TGTG----------CTTGCCTGTGCGC--TGAGTACCTGG-AGGGCCGGGCTCC
i ponAbe2.chr3             C 0 C 0
s macFas5.chr6             180256956 41 - 181584905 GGTG----------CTTGCCTGTGCGC--TGAGTGCCTCG-AGGGCCGGGCTCG
i macFas5.chr6             C 0 C 0
s papAnu2.chr6             173144927 41 - 174439528 GGTG----------CTTGCCTGTGCGC--TGAGTGCCTCG-AGGGCCGGGCTCG
i papAnu2.chr6             I 9498 T 9539
s chlSab2.chr4              89589622 42 -  91010382 GGTG----------CTTGCCTGTGCGC--TGAGTGCCTCGCGGGGCCGGGCTCG
i chlSab2.chr4             C 0 C 0
s calJac3.chr2                138505 43 - 204313951 CGTG----------CCTTCCCGTGCGTTGTGAGTGCCTCG-AGGGCCGGGCTCG
i calJac3.chr2             C 0 C 0
s mm10.chr13                46071858 41 - 120421639 -GTGTTCATCCAGTCTTGCGACTTCTT--TTTGCATTTGA-AGAG---------
i mm10.chr13               C 0 C 0
e canFam3.chr34             30159787 431 -  42124431 I
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=483066.000000
s hg38.chr3_KI270935v1_alt     29452 269 +    197351 GCTTAGTCCAGGATGATGGTCAGGGTTATACTTCCCTGA--------GCCCTTGCTCTCTGAGT--GTCTGAATGTGCCCTCTA-CGATTGCATCTTCAGAATCGGCCTTCTAGGATTTCATTTAATCAAGCGAAATTGGATAGGTTTAGTTGTTTGGTTCTTTTAAATGAACTTAGCCACCCACCTC-TTAATTACAAAGTAATTTTAAATTGCAGAGTAAAAATCTCAATAGAGGAACCAAGGCATTCAGCAATATTGATTTGAATTATGCCTGTGATT
s panTro4.chr3                658761 270 - 202329955 GCTTAGTCCAGGATGATGGTCAGGGTTATACTTCCCTGA--------GCCCTTGCTCTCTGAGTTTGTCTGAATGTGCCCTCTA-CGATTGCATCTTCAGAATCGGCCTTCTAGGATTTTATTTAATCAAGCGAAATTGGATAGGTTTAGTTGTTTGGTTCTTTTAAATGAACTTACCCACCCACCTCCTTAATTACAAAGTAATTTTAAATTGCAGAGTAAAAATCTCAATAG--GAACCAAGGCATTCAGCAATATTGATTTGAATTATGCCTGTGATT
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199679784 267 + 202140232 GCTTAGGCCAGGACGATGGTCAGGGTTATACTTCCCTGA--------GCCCTTGCTCTCTGAGTTTGTCTGAATGTGCCCTCTA-CCATTGCATCTTCAGAATCGGCCTTCTGGGATTTTATTTAATCAAGCTAAATTGGATAGGTTTA---GTTTGGTTCTTTTAAATGAACTTACCCACCCACCTCCTTAATTACAAAGTAATTTTAAATTGCAGAGTAAAAATCTCAATAG--GAACCAAGGCATTCAGCAATATTGATTTGAATTATGCCTGTAATT
i ponAbe2.chr3             C 0 C 0
s macFas5.chr6             180256997 270 - 181584905 GCTTAGTCCAGGATGACGGTCAGGGTTATGCTTCCCTGA--------GCCCTCGCTCTCTGAGTTTGTCTGAATGTGCCCTCCA-CGATTGCATCTTCAGAATCGGCCTTCTAGGGTTTTAGTTCATCAAGCTGAATTGGATAGGTTTCGTTGCTTGGTTCTTTTGAATGAACTTACCCACCCACCTCCTTAATTACGAAGTAATTTTAAATTGCAGAGTAAAAATGTCAATAG--GAACCAAGGCATTCAGCAATATTGATTTGAATTATGTCTATAAAT
i macFas5.chr6             C 0 C 0
s papAnu2.chr6             173135429 270 - 174439528 GCTTAGTCCAGGGTGACGGTCAGGGTTGTACTTCCCTGA--------GCCCTCGCTCTCTGAGTTTGTCTGAATGTGCCCTCCA-CGATTGCATCTTCAGAATCGGCCTTCTAGGGTTTTAGTTAATCAAGCTGAATTGGATAGGTTTCGTTGCTTGGTTCTTTTGAATGAACTTACCCACCCACCTCCTTAATTACGAAGTAATTTTAAATTGCAGAGTAAAAATGTCAGTAG--GAACCAAGGCATTCAGCAATATTGATTTGAATTATGCCTATAAAT
i papAnu2.chr6             T 9539 C 0
s chlSab2.chr4              89589664 270 -  91010382 GCTTAGTCCAGGATGACGGTCAGGGTTATACTTCCCTGA--------GCCCTCACTCTCTGAGTTTGTCTGAATGTGCCCTCCA-CGATTGCATCTTCAGAATCGGCCTTCTAGGGTTTTAGTTCATCAAGCTGAACTGGATAGGTTTCGTTGCTTGGTTCTTTTGAATGAACTTACCCACCCACCTCCTTAATTACGAAGTAATTTTAAATTGCAGAGTAAAAACGTCAATAG--GAACCAAGGCATTCAGCAATATTGATTTAAATTATGCCTGTAATT
i chlSab2.chr4             C 0 C 0
s calJac3.chr2                138548 266 - 204313951 GACTAGTCCAGGATGAAGGGCAGGGTTATACTTCCCTGA--------TCCCTTGCTGTCTGAGTTTGTCTGAATGTGCCCTCTG-CTATTGCCTCTTCAGAATCGGCCTTCTAGGGTTTTATTTAATCAAGGTAAATTTGATAGGTTTAGTTATTTGGTTCTTTGAAATGAACTTACCCACCCAC----TTAATTACAAAGTAATTTTAAATTGCAGAGTAAAAATGTCAGTAG--GAACCAAGGCATTCAGGAATATTGATTTGAAATATGCCTGTAATT
i calJac3.chr2             C 0 C 0
s mm10.chr13                46071899 242 - 120421639 -----GTACACAGTGAC--TCAGGGTTGCAGGGGTCTGATGTTGGCCTCCCAGATTGTCAGATCTTGTCTCAGTGCACTCTTTGCCGGTCACCTGTTATTCGTCACACTCCTAGGGTTTTATTAACGTAAACTAAATTTGACAGGT--------TGGGTTCTTTAAAGTT--CTGTCTCACCTACCTACTTAA--------CAATTT--AATTACAAAGTAA----------AG--GCCCTAAGACATTGAACAGTATCGACTTGCATTGTGCATCAAATT
i mm10.chr13               C 0 C 0
e canFam3.chr34             30159787 431 -  42124431 I
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=367252.000000
s hg38.chr3_KI270935v1_alt     29721 241 +    197351 G----TGCAATTTTCTCCTTTTTGAAATAGTTATTGAAAATCTCTTTGAATTAAATGT--GAGGATTAGTCATACAGCCATCCTGTCAACATCGGAAAGCGTGT--AAACCGTTCTAGCGTGTTGCTGTGGTTGGTGCTGACTGAGCAGAGA-CCCCCGCCG-CATCTTGGGCTCTTAGGAGCTGCTGGGAGGGCGTCCACAAGCAGG-----AGGTGAAGCCCATGGTCAGTGGGACTTTTTAGGGGCAATGGTA
s panTro4.chr3                659031 241 - 202329955 G----TGCAGTTTTCTCCTTTTTGAAATAGTTATTAAAAATCTCTTTGAATTAAATGT--GAGGGTTAGTCATACAGCCATCCTGTCAACATCGGAAAGCGTGT--AAACCGTTCTAGCGTGTTACTGTGGTTGGTGCTGACTGAGCAGAGA-CCCCCGCCG-CATCTTGGGCTCTTAGGAGCTGCTGGGAGGGCGTCCACAAGTAGG-----AGGTGAAGCCCATGGTCAGTGGGACTTTTTAGGGGCAATGGTA
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199680051 241 + 202140232 G----TGCAGTTTTCTCCTTTTTGAAATAGTTATTAAAAATCTCTTTGAATTAAATGT--GAGGATTAGTCATACAGCCATCCTGTCAACATTAGAAAGCATGT--AAACCGTTCTAGTGTGTTGCTGTGGTTGGTGCTGACTGAGCAGAGA-CCCCCGCCG-CATCTTGGGCTCTTAGGAGCTGCTAGGAGGGCGTCCACAAGCAGG-----AAGTAAAGCCCATGGTCAGTGGGACTTTTTAGGGGAAATGGTA
i ponAbe2.chr3             C 0 C 0
s macFas5.chr6             180257267 239 - 181584905 G----TGCAGTTTTCTCCTTTTTGAAATAGTTATTAAAAACGTCGTTGAATTAAATGT--GAAGATTAGTCATACAGCCATCCTGTC-ACATCAGAAAGCATGT--AAA-CGTTCTAGTGTGTTGCTGTGATTGGTGCTGACTGAGCAGAGA-TCCCTGCCG-CATCTTGGGCTTTTAAGAGCTGCTAGGAGGGCGTTGACAAGCCAG-----AAGTAAAGCCCATGGTCAGTGGGGCTTTTTAGGGGAAATGTTA
i macFas5.chr6             C 0 C 0
s papAnu2.chr6             173135699 239 - 174439528 G----TGcagttttctcctttttgaaATAGTTATTAAAAACCTCGTTGAATTAAATGT--GAAGATTAGTCATACAGCCATCCTGTC-ACATCAGAAAGCATGT--AAA-CGTTCTAGTGTGTTGCTGTGGTTGGTGCTGACTGAGCAGAGA-TCCCTGCCG-CATCTTGGGCTTTTAAGAGCTGCTAGGAGGGCGTTGACAAGCCAG-----AAGTAAAGCCCATGGTCAGTGGGGCTTTTTAGGGGAAGTGTTA
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89589934 239 -  91010382 G----TGCAGTTTTCTCCTTTTTGAAATAGTTATTAAAAACCTCGTTGAATTAAATGT--GAAGATTAGTCATACAGCCATCCTGTC-GCATCAGAAAGCAGGT--AAA-CGTTCTAGTGTGTTGCTGTGGCTGGTGCTGACTGAGCAGAGA-TCCCTGCCG-CTTCTTGGGCTTTTAAGAGCTGCTTGGAGGGCGTCCACAGGCAGG-----AAGTAAAGCCCATGGTCATTGGGGCATTTTAGGGGAAACGTTA
i chlSab2.chr4             C 0 C 0
s calJac3.chr2                138814 197 - 204313951 G----TGCGATTTTC---------------------------TGGTTGAATTAAATGT--GAGGATTAGTCATGCACCCATCCCGTCTACATCATGTAA-ATCT--AAA-CGTTTTAGTGTGTTGCTGTGGTTGGTGCTGACTGAGCAGAGACCCCCCGCCG-CATCTTGGGCGCTTAAGAGCTGCCAGGAGGGCGTCCACAAGCAAG-----AAGTAAAGTCCGTGGTCAGTG----------------ACGGTA
i calJac3.chr2             C 0 C 0
s mm10.chr13                46072141 228 - 120421639 ATGGCTGCAGTTGTCTATTTTCTGAAATAGATATTAAAATGCATGTTCAATGAAATGTTCAAGGGTTAGTTG-GCAGCTATTCTTGCAAGGCCAGAAGGCATTTTCAAACCTTGATA----ATTTCTGTGATTTGTATTTGCTGC-CACAAA-CTCCTACTTCCACCTCTATCCCTTGGGCTCTGCAAGAAGGGTTTT--------------------AAGTCC-TGATCATTGAAGCCCTTTACAGGAGATAATA
i mm10.chr13               C 0 I 1179
s canFam3.chr34             30160218 206 -  42124431 G----TGCAGTTCTGTCCGTCCTGAAATAG-------AGGTCTTACCAGTTCACGTGA--GGAGGGT-------CAGCCATCCCGCCAGCGCCGGAGGACAGTT--TACAGGCTTTCACGAGTTGCTGTGGCTGGAG-----GGTGCAGAGT-CCGCGGTCG----GTGGGGTCATCGCGGTCAGCT--------GTCCCTAAGCAGACTTGCAGGTGCTCCTACCTGTCAGC---------TGAAGAGACTGAC-
i canFam3.chr34            I 431 C 0
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=40027.000000
s hg38.chr3_KI270935v1_alt     29962 30 +    197351 GCTTGTGGTTGGAGAGAAGCTAGATAGAGC
s panTro4.chr3                659272 30 - 202329955 GCTTGTGGTTGGAGAGAAGCTAGTTAGAGC
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199680292 30 + 202140232 GCTTGTGATTGGAGAAAAATTAGATAGAGC
i ponAbe2.chr3             C 0 C 0
s macFas5.chr6             180257506 26 - 181584905 GCTTGTGATTGGAGAAAAGC----TAGGGC
i macFas5.chr6             C 0 C 0
s papAnu2.chr6             173135938 26 - 174439528 GCTTGTGATTGGAGAAAAGC----TAGGGC
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89590173 26 -  91010382 GCTTGTGATTGGAGAAAAGC----TAGGGC
i chlSab2.chr4             C 0 C 0
s calJac3.chr2                139011 26 - 204313951 GCTTGCTATTAGAGAAGAGC----TAGGGC
i calJac3.chr2             C 0 C 0
s canFam3.chr34             30160424 28 -  42124431 GGGTGTGTTTGGGGACAAGCGGGATAGG--
i canFam3.chr34            C 0 C 0
e mm10.chr13                46072369 1179 - 120421639 I
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=110666.000000
s hg38.chr3_KI270935v1_alt     29992 57 +    197351 CAGTGCCTTTGTCCCCAA------CCCAGATGGTGCCCAGTGTTCCTTCTGCAGACTAAGGCC
s panTro4.chr3                659302 57 - 202329955 CAGTGCCTTTGTCCCCAA------CCCAGATGGTGCCCAGTGTTCCTTCTGCAGACTAAGGCC
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199680322 57 + 202140232 TAGTTTCTCTGTCCTCAA------CCTAGATGGTGCCCAGTGTTCCTTCTGCAGACTAAGACC
i ponAbe2.chr3             C 0 C 0
s macFas5.chr6             180257532 57 - 181584905 TGGTGCCTTTGTCCTTAA------CCCAGATGGTGCCCAGTGTTCCTCCTGCAGCCTCAGACC
i macFas5.chr6             C 0 C 0
s papAnu2.chr6             173135964 57 - 174439528 TGGTGCCTTTGTCCTTAA------CCCAGATGGTGCCCAGTGTTCCTCCTGCAGCCTCAGACC
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89590199 57 -  91010382 TGGTGCCTTTGCTGTCAA------CCCAGATGGTGCCCAGTGTTCCTTCTGCAGCCTAAGACC
i chlSab2.chr4             C 0 C 0
s calJac3.chr2                139037 57 - 204313951 TAGTACCTTTGTCCTCAT------CCCGGATGGTGCCCGGTGCTCCTTCTGCAGACCAAGACC
i calJac3.chr2             C 0 C 0
s mm10.chr13                46073548 52 - 120421639 CAGTGTCCTCGTCCTAGG------C-----TGGTGCTCAGTGATTCCTCTGGAGACTAAGACC
i mm10.chr13               I 1179 I 2297
s canFam3.chr34             30160452 54 -  42124431 -------TCTGTCCACAGTCATCCCCCGCCTGGTGCTT--CCGTCCTCGTGCAGACTGCGACC
i canFam3.chr34            C 0 C 0
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=6344.000000
s hg38.chr3_KI270935v1_alt     30049  6 +    197351 CC-----------AGGC
s panTro4.chr3                659359  6 - 202329955 CC-----------AGGC
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199680379  6 + 202140232 CC-----------AGGC
i ponAbe2.chr3             C 0 C 0
s macFas5.chr6             180257589 17 - 181584905 CCGCCAGCGGCGGAGGC
i macFas5.chr6             C 0 C 0
s papAnu2.chr6             173136021 17 - 174439528 CCGCCAGCGGCGGAGGC
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89590256 17 -  91010382 CCGCCAGCGGCGGAGGC
i chlSab2.chr4             C 0 C 0
s calJac3.chr2                139094 17 - 204313951 CCACCAGCCCTGGAGGT
i calJac3.chr2             C 0 C 0
s canFam3.chr34             30160506  7 -  42124431 ----------CTCAGGC
i canFam3.chr34            C 0 I 245
e mm10.chr13                46073600 2297 - 120421639 I
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=35765.000000
s hg38.chr3_KI270935v1_alt     30055 20 +    197351 ACCTCAGACCAGATGGCAAG
s panTro4.chr3                659365 20 - 202329955 ACCTCAGACCAGATGGCAAG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199680385 20 + 202140232 ACCTCAGACAAGATGGCAAG
i ponAbe2.chr3             C 0 C 0
s macFas5.chr6             180257606 20 - 181584905 ACCTCAGACAAGATGGCAAG
i macFas5.chr6             C 0 C 0
s papAnu2.chr6             173136038 20 - 174439528 ACCTCAGACAAGATGGCAAG
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89590273 20 -  91010382 ACCTCAGACAAGATGGCAAG
i chlSab2.chr4             C 0 C 0
s calJac3.chr2                139111 20 - 204313951 GCTTCAGACAAAATGGCAAG
i calJac3.chr2             C 0 C 0
e mm10.chr13                46073600 2297 - 120421639 I
e canFam3.chr34             30160513 245 -  42124431 I
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=113501.000000
s hg38.chr3_KI270935v1_alt     30075 71 +    197351 ATAGCAAAATGGAACCAAAATTTA---------------GTCTTGGGTTTTGTAAAAGTCTTTTT---------ATCTTGATGAAGGTAGCTTTT
s panTro4.chr3                659385 71 - 202329955 ATAGCAAAATGGAACCAAAATTTA---------------GTCTTGGGTTTTGTAAAAGTCTTTTT---------ATCTTGATGAAGGTAGCTTTT
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199680405 80 + 202140232 ATAGCAAAACGGAACCAAAATTTA---------------GTCTTGGGTTTTGTAAAAGTCTTTTTTACAAAAAAAACTTGATGAAGGTAGTTTTT
i ponAbe2.chr3             C 0 C 0
s macFas5.chr6             180257626 69 - 181584905 ATAGCGAAATTTAACCAAAATTTA---------------GTCTTGGGTTTTGTAAAAGTCTTTTT---------ATCT--ATGAACTTAGCTTTT
i macFas5.chr6             C 0 C 0
s papAnu2.chr6             173136058 69 - 174439528 ATAGCGAAATTTAACCAAAATTTA---------------GTCTTGGGTTTTGTAAAAGTCTTTTT---------ATCT--ATGAAGTTAGCTTTT
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89590293 68 -  91010382 ATAGCAAAATTGAACCAAAATTTA---------------GTCTTGGGTTTTGTAAAAGTCTTTTT---------ATCT---TGAAGTTAGCGTTT
i chlSab2.chr4             C 0 C 0
s calJac3.chr2                139131 84 - 204313951 ATAGCAAAATTAAACCAAAAGTTAGGCCTACCAAATATGGTCTTGTGTTTTTT--AAGTATTTTT---------ATATTGATGAAGTCAGCTTTT
i calJac3.chr2             C 0 C 0
s canFam3.chr34             30160758 83 -  42124431 ATAGCAAAATTGAGCCGCCACTTAGGCCTCCTAGAAGATGCCTTTGGTCTT---AAAGTCTTTAT---------ATCTTGATGAAGATAGCTTTT
i canFam3.chr34            I 245 I 1098
e mm10.chr13                46073600 2297 - 120421639 I
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=16605.000000
s hg38.chr3_KI270935v1_alt     30146 9 +    197351 CCTACAGAA
s panTro4.chr3                659456 9 - 202329955 CCTACAGAA
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199680485 9 + 202140232 GCTACAGAA
i ponAbe2.chr3             C 0 C 0
s macFas5.chr6             180257695 9 - 181584905 CCTACAGAA
i macFas5.chr6             C 0 C 0
s papAnu2.chr6             173136127 9 - 174439528 CCTACAGAA
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89590361 9 -  91010382 CCTACAGAA
i chlSab2.chr4             C 0 C 0
s calJac3.chr2                139215 9 - 204313951 CCTACAGAA
i calJac3.chr2             C 0 I 1138
e mm10.chr13                46073600 2297 - 120421639 I
e canFam3.chr34             30160841 1098 -  42124431 I
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=2548.000000
s hg38.chr3_KI270935v1_alt     30155 1 +    197351 A
s panTro4.chr3                659465 1 - 202329955 A
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199680494 1 + 202140232 A
i ponAbe2.chr3             C 0 C 0
s macFas5.chr6             180257704 1 - 181584905 A
i macFas5.chr6             C 0 I 1148
s papAnu2.chr6             173136136 1 - 174439528 A
i papAnu2.chr6             C 0 I 1450
s chlSab2.chr4              89590370 1 -  91010382 A
i chlSab2.chr4             C 0 I 1148
s calJac3.chr2                140362 1 - 204313951 A
i calJac3.chr2             I 1138 C 0
s canFam3.chr34             30161939 1 -  42124431 A
i canFam3.chr34            I 1098 C 0
e mm10.chr13                46073600 2297 - 120421639 I
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=249407.000000
s hg38.chr3_KI270935v1_alt     30156 155 +    197351 GTCGTGC----GTTTTTGGGTTCTTCGTTGGCTGCTTTTGTGATTGTGTAGGCTGTACATGCAGATTCGTTTCTTGCTCAT------------GATTT-------ATAGGTGCATTTTATTCGATGAGGACCCCTTACTTTGCTAGATTTCGGATATGAATGTCTCTGCACTTGTTAC
s panTro4.chr3                659466 155 - 202329955 GTCGTGC----GTTTTTAGGTTCTTCGTTGGCTGCTTTTGTGATTGTGTAGGTTGTACATGCAGATTAGTTTCTTGCTCAT------------GATTT-------ATAGGTGCATTTTATTCGATGAGGACCCCTTACTTTGCTAAATTTCTGATATGAATGTCTCTGCACTTCTTAC
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199680495 155 + 202140232 GTCGTGC----GTTTTTAGGTTCTTCGTTGGCTGCCTTTGTGATTGTGTAGGTTGTACATGCAGATTAGTTTCTTGCTGAT------------GATTT-------ATAGGTGCATTTTATTCGATGAGGACCCCTTACTTTGCTAGATTTCGTATATTAATGTCGCTGCACTTCTTCC
i ponAbe2.chr3             C 0 C 0
s macFas5.chr6             180258853 150 - 181584905 GTCATGC----GTGTTTAGGTTCTTCGCTGGCTGCTTTTGTGATTGTGTGGGTTGTACATGCAGATTAGTTTCTTGCTCAT------------GATTT-------ATAGTTGCATTTGATTAGATGAGGACCCCTCACTTTGCTAGATTTCGGA-ATTAATGTCTCTGCACTT----C
i macFas5.chr6             I 1148 C 0
s papAnu2.chr6             173137587 148 - 174439528 GTCATGC----GTGTTTAGGTTCTTCGCTGGCTGCTTTTGTGATTGTATGGGTTGTACATGCAGATTAGTTTCTTGCTCAT------------GA--T-------ATAGTTGCATTTGATTAGATGAGGACCCCTCACTTTGCTAGATTTCGGG-ATTAATGTCTCTGCACTT----C
i papAnu2.chr6             I 1450 C 0
s chlSab2.chr4              89591519 154 -  91010382 GTCATGC----GTGTTTAGGTTCTTCGCTGACTGCTTTTGTGATTGTATGGGTTGTACGTGCAGATTAGTTTCTTGCTCAT------------GATTT-------ATAGTTGCATTTGATTAGATGAGGACCCCTCACTTTGGTAGATTTCGGG-ATTAATGTCTCTGCACTTCTTAC
i chlSab2.chr4             I 1148 C 0
s calJac3.chr2                140363 177 - 204313951 GTCGTGCAACTATTTTTAGGCTCTTCGTTGGCTGCTCTTGTAATTGTGCAGATTGTACCTGCAGTTTAATTTCTTACCCATTTTATTAGATGAGATTTTATTTTATTAGATGTATTTTACTAGATGAGAA-CTCTTATTTTGCTAGATTTTGGATGTTAGTGTCTCTATACTTCTTAC
i calJac3.chr2             C 0 I 394
s canFam3.chr34             30161940 135 -  42124431 GTCATGCAACCACTTTTAGATCCTTTATTGGCTGCTTTTCTGATTGTGT-------------AGATCAATTTCCTTTTCAT------------GATTC-------ATAGATACCTGTTACTAGATGAGGACTGTCCTCTTTGCTAGATTCCACC------CTTCTCTTCACTT-----
i canFam3.chr34            C 0 C 0
e mm10.chr13                46073600 2297 - 120421639 I
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=35261.000000
s hg38.chr3_KI270935v1_alt     30311 27 +    197351 TTTTCCCCCTCCACCTCCTGATTCAGT
s panTro4.chr3                659621 27 - 202329955 TTTTCCCCCTCCACCTCCTGATTCAGT
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199680650 27 + 202140232 TTTTCCCCCTCCACCTCCTAATTCAGT
i ponAbe2.chr3             C 0 C 0
s macFas5.chr6             180259003 27 - 181584905 TTTTCCCCCTCCAGCTCCTAATTCAGT
i macFas5.chr6             C 0 C 0
s papAnu2.chr6             173137735 27 - 174439528 TTTTCCCCCTCCAGCTCCTAATTCAGT
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89591673 27 -  91010382 TTTCCCCCCTCCACCTCCTAATTCAGT
i chlSab2.chr4             C 0 C 0
s canFam3.chr34             30162075 22 -  42124431 TTTTCTCCCTTTTACTGTCATT-----
i canFam3.chr34            C 0 C 0
e mm10.chr13                46073600 2297 - 120421639 I
e calJac3.chr2                140540 394 - 204313951 I
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=179341.000000
s hg38.chr3_KI270935v1_alt     30338 115 +    197351 CATCTGAAATTCTGTATTGTTAAGCAAGGTC---------TAAGTATTCCTTTTAGTTATATGTTCCCCATGTTTTTTCTTAG----------AGGAAATGTTTGATAGTTTCTCCTAAAAAA--TTAATAATTGG
s panTro4.chr3                659648 116 - 202329955 CATCTGAAATTCTGTATTGTTAAGCAAGGTC---------TAAGTATTCCTTTTAGTTATATGTTCCCCATTTTTTTTCTTAG----------AGGAAATGTTTGATAGTTTCTCCTAAAAAA-ATTAATAATTGG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199680677 116 + 202140232 CATCTGAAATTCTGTATTGTTAAGCAAGGTC---------GAAGTATTCCTTTTAGTTATATGTTCCCCATTTTATTTCTTAG----------AGGAAATGTTTGATAGTTTCTCCTAAGAAA-ATTAATAATTGG
i ponAbe2.chr3             C 0 C 0
s macFas5.chr6             180259030 106 - 181584905 TGTCTGAAATTCCATATTGTTAAGCAAGGTC---------TAA-TATTCCTT----TTATATATTCCCCATTTT-TTTCTTAG----------AGGAAATGTTTGATAGTTTCTCCTAAAAA-----AATAATTGG
i macFas5.chr6             C 0 C 0
s papAnu2.chr6             173137762 110 - 174439528 TGTCTGAAATTTCATATTGTTAAGCAAGGTC---------TAA-TATTCCTT----TTATATGTTccccatttt-tttcttag----------agGAAATGTTTGATAGTTTctcctaaaaaa-attaataattgg
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89591700 110 -  91010382 CATCTGAAATTCTATATTGTTAAACAAAGTC---------TAA-TATTCCTT----TTATATGTTGCCAATTTT-TTTCTTAG----------AGGAAATGTTTGATAGTTTCTCCTAAAAAA-ATTAATAATTGG
i chlSab2.chr4             C 0 C 0
s calJac3.chr2                140934 113 - 204313951 CGTCTGAAATTCTATATTGTTAAGCAAGGTC---------TAACTTTTCCTTTTAGTTATATGTTCCCCATT---TTTCTTAG----------AGGAAATGTTTAATAGTTTCTCCTAAAAAA-ATTAATAATTGA
i calJac3.chr2             I 394 C 0
s canFam3.chr34             30162097 132 -  42124431 CACCTGTGCTTTCCTGCCATTAA--AAGGTCTGTTTCCTTTAATTTTACCTCTTAGGTAGAT-TTCCTCATTCT-TCTCTATGTTGTTCTGTTGGAAAATGCTTGAAGCTTTAACTTAAAAAATGTTAGTAAGTgg
i canFam3.chr34            C 0 I 722
e mm10.chr13                46073600 2297 - 120421639 I
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=258474.000000
s hg38.chr3_KI270935v1_alt     30453 162 +    197351 C--ACAAAAGACTAGTTTTGTGTCAAAAGTAGTTTTGAGTTTTATCTAAAGACTGACATTGGCTTGAAGTTGGGCTTTCCAGATTCAAAAATCTGCCCCAGATGAGATTTAGATGCAGAGGGTTAGTGTCCTTTTCCCCAGGGGGATGGCGTGATGATTTGTTC
s panTro4.chr3                659764 162 - 202329955 C--ACAAAAGACTAGTTTTGTGTCAAAAGTAGTTTTGAGTTTTATCTAAAGACTGACATTGGCTTGAAGTTGGGCTTTCCAGATTCAAAAATCTGCCCCAGATGAGATTTAGATGCAGAGGGTTAGTGTCCTTTTCCCCGGGGGGATGGCGTGATGATTTGTTC
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199680793 162 + 202140232 C--ACAAAAGACTAGTTTTGTGTCAAAACTAGTTTTGAGTTTTATCTAAAGACTGACATTGGCTTAAAGTTGGGCTTTCCGAATTCAGAAATCTGCCCCAGATTAGATTTAGATGCAGAGGGTTAGTGTCCTTTTCCCCAGGGGGATGGCGTGATAATTTGTTC
i ponAbe2.chr3             C 0 C 0
s macFas5.chr6             180259136 161 - 181584905 C--ACACAAGACTAGTCTTGTGTCAAAACTAGTTTTCAGTTTTATCTAAAGACTGAAATTGGCTTAAAGTTGGGCTTT-CACATTCAAAACTCTGCCCCAGATTAGATTTAGACGCAGAGGGTGAGTGTCCTTGTCCCCAAGGGGATGGCGTGATAATTTGTTC
i macFas5.chr6             C 0 C 0
s papAnu2.chr6             173137872 160 - 174439528 c--ACACAAGACTAGTCTTGTGTCAAAACTAGTTTTCAGTTTTATCTAAAGACTGAAATTGGCTTAAAGTTGGGCTTT-CACATTGAAAACTCTGCCCCAGATTAGATTTAGACACAGAGGGTGAGTGTCCTTGTCCCC-AGGGGATGGCGTGATAATTTGTTC
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89591810 161 -  91010382 C--ACACAAGACTAGTCTTGTGTCAAAACTAGTTTTCAGTTTTATCTAAAGACTGAAATTGGCTTAAAGTTGGGCTTT-CAAATTCAAAACTCTGCCCCAGATTAGATTTAGACGTAGAGGGTGAGTGTCCTTGTCCCCAAAGGGATGGCTTGATAATTTGTTC
i chlSab2.chr4             C 0 C 0
s calJac3.chr2                141047 163 - 204313951 CCAAAAAAAGATTAGTTTTGTGTCAAAACTAGTTTTCAATTTTATCTAAAGACTGAAATTGGCTTAAAGTTGGGCTTTCCAAATTCAAAAATCTCCCCCAGGTTAGA-TTAGATGCAAAGGGTCAGTGCCTTTTTCTCCAGGGGGATGGCGTAGTAATTTGTTA
i calJac3.chr2             C 0 C 0
e mm10.chr13                46073600 2297 - 120421639 I
e canFam3.chr34             30162229 722 -  42124431 I
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=178451.000000
s hg38.chr3_KI270935v1_alt     30615 112 +    197351 AAGATTGTGTTATAGTAGCTGCCCCT-TTTAAGGCAGCTGTGTGTGTGTGTGGTGGGGAGTGGGCA-----GTGTGTATTCCACATCAACATCCTAGAAAGAACGAATAAACATTTAG
s panTro4.chr3                659926 112 - 202329955 AAGATTGTGTTATAGTAGCTGCCCCT-TTTAAGCCAGCTGTGTGTGTGTGTGGTGGGGGGTGGGCA-----GTGTGTATTCCACATCAACATCCTAGAAAGAACGAATAAACATTGAG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199680955 112 + 202140232 AAGATTGTGTTATAGTAGCTGCCCCT-TTTAAGCTAGCTCTGTGTGTGTGTGGTGGGGGGTGGGCA-----GTGTGTATTCCACATCAATATCCTAGAAAGAACAAATAAACATTTAG
i ponAbe2.chr3             C 0 C 0
s macFas5.chr6             180259297 110 - 181584905 ACAGTTGTGTTATGGGAGCTGCCCCT-TCTAAGCTGGCTCTATGTGTGTGTGGCCGGG-GCGGGCA-----GTGGGCATTCCATGTCAGCATCCTAGAAAGAACAAATAAAC-TTTAG
i macFas5.chr6             C 0 C 0
s papAnu2.chr6             173138032 110 - 174439528 ACGGTTGTGTTATGGGAGCTGCCCCT-TCTAAGCtggccctgtgtgtgtgtggccggG-GTGGGCA-----GTGGGCATTCCACGTCAGCATCCtagaaagaacaaataaac-ttTAG
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89591971 111 -  91010382 ACGGTTGTGTTATGGGAGCTGCCCCT-TTTAAGCTGGCTCTGTGTGTGTGTGGCGGGG-GTGGGCA-----GTGGGTATTCCACGTCAGCATCCTAGAAAGAACAAATCAACATTTAG
i chlSab2.chr4             C 0 C 0
s calJac3.chr2                141210 104 - 204313951 AAGATTTTATTATAGTAGCTGCGCCT-TTTAAGCTAG--------GTCTGCGGCAGGGGTGGGGTG-----GGGGGTATTCCACATGAACATTCTAGAGAGAACAAATAAACATTTAG
i calJac3.chr2             C 0 C 0
s canFam3.chr34             30162951 118 -  42124431 aaGATTTCATGATAATAGCTGCCACTGTTGAAGCTAGCCatgtgtgtgtatgtgtgtgtatgtgtatatgtgtCCTTATTCAACATGAACATCTTAGAAAGAAGAAACAAATGCTTAG
i canFam3.chr34            I 722 I 1445
e mm10.chr13                46073600 2297 - 120421639 I
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=86680.000000
s hg38.chr3_KI270935v1_alt     30727 48 +    197351 TGATCTCACTGTTTCTACTTACA------TTTGGTAT-----AATGTACTGTTTTTATT
s panTro4.chr3                660038 48 - 202329955 TGATCTCACTGTTCCTACTTACA------TTTGGTAT-----AATGTACTGTTTTTATT
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199681067 48 + 202140232 TGATCTCACTGTTTCTACTTACG------TTTGGTAT-----AATATACTGTTTTTATA
i ponAbe2.chr3             C 0 C 0
s macFas5.chr6             180259407 48 - 181584905 TGATCTCACTGTTTCTACTTACA------GTTGGTGT-----AATACACTGTTGTTATT
i macFas5.chr6             C 0 C 0
s papAnu2.chr6             173138142 48 - 174439528 TGATCTCACTGTTTCTAATTACA------GTTGGTGT-----AATACACTGTTGTTATT
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89592082 48 -  91010382 TGATCTCACTGTTTCTACTTACA------TTTGGTGT-----AATACACTGTTGTTATT
i chlSab2.chr4             C 0 C 0
s calJac3.chr2                141314 48 - 204313951 TGACCTCACTGTTTCTATTTACA------TTTGATAT-----AGCATACTGtttttttt
i calJac3.chr2             C 0 I 283
s canFam3.chr34             30164514 59 -  42124431 TGGACTCATGGTTTCTATTTTAATTTCGGTTTGGTATTGCAAAATATACTGTTCTTTTT
i canFam3.chr34            I 1445 C 0
e mm10.chr13                46073600 2297 - 120421639 I
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=235612.000000
s hg38.chr3_KI270935v1_alt     30775 171 +    197351 GGTGCTATTACCTATGTTAATAGGGCACTTTACAAAATTTTCAAGAACGTTTTTATTAAAATTATTTCAAAGACTTCTTTCTTAAAATATGATTTTACCATGTAAAAAATTATACTAAGGTAGAAGAATATTCGTTCT--TTCTC------ATTTTCTGAAAAAAGAAAAAACTAAATT
s panTro4.chr3                660086 171 - 202329955 GGTGCTATTACCTATGTTAATAGGGCACTTTACAAAATTTTCAAGAACGTTTTTATTAAAATTATTTCAAAGACTTCTTTCTTAAAATATGATTTTACCATGTAAAAAATTATACTGAGGTAGAAGAATATTCGTTGT--TTCTC------ATTTTCTGAAAAAAGAAAAAACTAAATT
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199681115 171 + 202140232 GGTGCTATTACCTATGTTAATAGGGCACTTTACAAAATTTTCAAGAACGTTTGTATTAAAATTATTTCAAAGGCTTCTTTCTTAAAATATGATTTTACCGTGTAAAAAATTATACTGAGGTAGAAGAATATTCATTCT--TTCTC------GTTTTCTGAAGAAAGTAAAAACTAAATT
i ponAbe2.chr3             C 0 C 0
s macFas5.chr6             180259455 175 - 181584905 GGTGCTGTTACCTGTGTTAATAGGGCAGTTTACAAAAGTTTCAAGAACATTTATATTAAAATTATTTCAAAGACTTATTTCTTAAAATATGATTTTACCATGACAAAAATTATGTTAAAGTAGAAGAATATTTGTTCT--TTCTC--GTTTATTTTCTGAAAAAAGAAAAAACTGAATT
i macFas5.chr6             C 0 C 0
s papAnu2.chr6             173138190 173 - 174439528 GGTGCTGTTACCTGTGTTAATAGGGCAGTTTACAAAAGTTTCAAGAAAGTTTGTATTAAAATTAGTTC--AgacttctttcttaaaatatgattttactttgtcaaaaattataCTAAGGTGGAAGAATATTTgttct--ttctc--attcattttctgaaaaaagaaaaaactgaatt
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89592130 175 -  91010382 GGTGCTGTTACCTGTGTTAATAGGGCAGTTTACAAAAGTTTCAAGAACATTTGTATTAAAATTATTTCAAAGACTTATTTCTTAAAATATGATTTTACCATGACAAAAATTATGTTAAGGTAGAAGAATATTTGTTCT--TTCTC--ATTTATTTTCTGAAAAAAGAAAAAACTGAATT
i chlSab2.chr4             C 0 C 0
s canFam3.chr34             30164573 158 -  42124431 GAAGCTAATACCTTT----ATACTGTACTTTATAAAATTTTCAAGAACATTTGTATTAAAATTCTCT----GACTTGT---TTAAGATATGATTTTACCAATTTTAAAATTATACTAAAACAGAAGAATATTCTTTTTAGTTTTTAGATTCATTTTCTGGGGAAA----------AATT
i canFam3.chr34            C 0 C 0
e mm10.chr13                46073600 2297 - 120421639 I
e calJac3.chr2                141362 283 - 204313951 I
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=166781.000000
s hg38.chr3_KI270935v1_alt     30946  95 +    197351 AGCTTATGTCAATAAAAAC----------AGA------CTAGAAATTGGAGAAATGAAGAATAATTTTTTATCCCACATAATAAGTAATTTGTGAATTGCAAG-----TATTTCTA
s panTro4.chr3                660257  95 - 202329955 AGCTTATGTCAATAAAAAC----------AGA------CTAGAAATTGGAGAAATGAAGAATAATTTTTTATCCCACATAATAAGTAATTTGTGAATTGCAAG-----TATTTCTA
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199681286  94 + 202140232 AGCTTATGTCAATAAAAACAG--------AGA------CTAGAAATTGGAGAAAT---GAATAATTTTTTATCCCACATAATAAGTAATTTCTGAATTGCAAG-----TATTTCTA
i ponAbe2.chr3             C 0 C 0
s macFas5.chr6             180259630  97 - 181584905 AGCTTATGTCAATAAAAACAG--------AGA------CTAGAAATTGGAGAAATGGAGAATAATTTTTTATTCCACATAATAAGTAATTTCTGAATTGCAAA-----TATTTCTA
i macFas5.chr6             C 0 C 0
s papAnu2.chr6             173138363  95 - 174439528 aGCTTATGTCAATAAAAAC----------AGA------CTAGAAATTGGAGAAATGGAGAATAATTTTTTATCCCACATAACAAGTAATTTCTGAATTGCAAG-----TATTTCTA
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89592305  97 -  91010382 AGCTTATGTCAATAAAAACAG--------AGA------CTAGAAATTGGAGAAATGGAGAATAATTTTTTATTCCACATAATAAGTAATTTCTGAATTGCAAA-----TATTTCTA
i chlSab2.chr4             C 0 C 0
s calJac3.chr2                141645 101 - 204313951 AGCTTATGTCAATAAAAACAA--------AGAAATAGTCTAGAAATTAGAGAAATGAAGAAT--TTTTCTCTTGTACAGAATAAATAATTTCTGAATTGCAAG-----TATTTCTA
i calJac3.chr2             I 283 C 0
s canFam3.chr34             30164731 107 -  42124431 GGCTTATATCGATAAAAACAAATATATTTAAA------GTTGAAATTGAAGAATTTAAGAAT-ATTGCTTTTGTCAGTTAAGATCTACTT--AGAAATCCAAGAAACTTATTTGTA
i canFam3.chr34            C 0 C 0
e mm10.chr13                46073600 2297 - 120421639 I
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=33558.000000
s hg38.chr3_KI270935v1_alt     31041 16 +    197351 AATACTTGAAGACATC
s panTro4.chr3                660352 16 - 202329955 AATACTTGAAGACATC
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199681380 16 + 202140232 AATACTTGAAGACATC
i ponAbe2.chr3             C 0 C 0
s macFas5.chr6             180259727 16 - 181584905 AATACTTGAAGACATC
i macFas5.chr6             C 0 C 0
s papAnu2.chr6             173138458 16 - 174439528 AATACTTGAAGACATC
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89592402 16 -  91010382 AATACTTGAAGACCTC
i chlSab2.chr4             C 0 C 0
s calJac3.chr2                141746 16 - 204313951 AATACTTGAAGACATC
i calJac3.chr2             C 0 C 0
s mm10.chr13                46075897 16 - 120421639 AATTCTTATGATCACT
i mm10.chr13               I 2297 C 0
s canFam3.chr34             30164838 12 -  42124431 ----ATTGGAGCTATC
i canFam3.chr34            C 0 I 332
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=102948.000000
s hg38.chr3_KI270935v1_alt     31057 50 +    197351 CCTCACATCCCCTCTTCTGATTGCTGAGTGCA--TAATTTCCTAAAGCtttt
s panTro4.chr3                660368 50 - 202329955 CCTCACATCCCCTCTTCTGATTGCTGAGTGCA--TAATTTCCTAAAGCtttt
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199681396 50 + 202140232 CCTCACGTCCCCTCTTCCGATTGCTGAGTGTA--TAATTTCCTAAAGCtttt
i ponAbe2.chr3             C 0 C 0
s macFas5.chr6             180259743 50 - 181584905 CCTCACATCCCCTCTTCTGATTGCTGAGTGTA--TTATTTCCTAAAGCTTTT
i macFas5.chr6             C 0 C 0
s papAnu2.chr6             173138474 50 - 174439528 CCTCACATCCCCTCTTCTGATTGCTGAGTGTA--TTATTtcctaaagctttt
i papAnu2.chr6             C 0 C 0
s chlSab2.chr4              89592418 51 -  91010382 TCTCACATCCCCTCTTCTGATTGCTGAGTGTA-TTTATTTCCTAAAGCtttt
i chlSab2.chr4             C 0 C 0
s calJac3.chr2                141762 50 - 204313951 TCTCACATCCCCTCTTCTGATTGTTGAGTGTA--TTGTTTCCTAAAtttttt
i calJac3.chr2             C 0 C 0
s mm10.chr13                46075913 52 - 120421639 CCTGACTTCCCCGTTTCTGATTACTAAGTGTACTTGACTACCTAGAACTTTT
i mm10.chr13               C 0 C 0
e canFam3.chr34             30164850 332 -  42124431 I
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=1047.000000
s hg38.chr3_KI270935v1_alt     31107 19 +    197351 ttttt----t--------------cttttgttttttt
s panTro4.chr3                660418 17 - 202329955 ttttt-------------------cttttgtttttt-
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199681446 22 + 202140232 ttttcctttt--------------cttttgtttttt-
i ponAbe2.chr3             C 0 C 0
s macFas5.chr6             180259793 36 - 181584905 ttttttttttcttttctctctctctttttttttttt-
i macFas5.chr6             C 0 I 2
s papAnu2.chr6             173138524 30 - 174439528 ttttttttct------tttctctctttttttttttt-
i papAnu2.chr6             C 0 I 2
s chlSab2.chr4              89592469 19 -  91010382 tttcttttct-----------------ttttttttt-
i chlSab2.chr4             C 0 I 54
s calJac3.chr2                141812  6 - 204313951 tttttt-------------------------------
i calJac3.chr2             C 0 C 0
e mm10.chr13                46075965  0 - 120421639 C
e canFam3.chr34             30164850 332 -  42124431 I
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=341658.000000
s hg38.chr3_KI270935v1_alt     31126 285 +    197351 ggagacattgtctcgctctgtcgcccaggccggagtacagtggcacagtctcggctcactgcaacctctgcctcctgggttcaagcgattctcctgcctcagcttcccaagtagctgggattacaggtgcccgccaccacgaccagctaatt--------tttagtagagagggggttttgccatgttggccagactggtctcgaactcctgacttcaggtgatctgcccaccttggcctccc-aaaatgctgggattacaggcatgagccaccacgcccagccCCTAAAACTA
s panTro4.chr3                660435 285 - 202329955 ggagacattgtctcgctctgtcgcccaggccggagtacagtggcacagtctcggctcactgcaacctctgcctcctgggttcaagcgattctcctgcctcagcttcccaagtagctgagattacaggtgcccgccaccacgtccagctaatt--------tttagtagagagggggttttgccatgttggccagactggtcttgaactcctgacttcaggtgatctgcccaccttggcctccc-aaaatgctgggattacaggcatgagccactgcgcccagccCCTAAAACTA
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199681468 286 + 202140232 ggagacattgtctcactctgtcgcccaggctggagtacggtggcacagtctaggcttactgcaacctctgcctcctgggttcaaggaattctcctgccttagcttcccaagtagctgggattacaggtgcccgccatcacgcccagctaatt--------tttagtagagaggggatttcgccatgttggccagactggtgtcgaactcctgacttcaggtgatccgcccaccttggcctcccaaaaatgctgggattacaggcatgagccaccgcgcccagccCCTAAAACTA
i ponAbe2.chr3             C 0 C 0
s macFas5.chr6             180259831 285 - 181584905 ggagacattgtctcgctctgttgcccaggctggagtgcagtggcagagtctaggctcactgcaacctctgcctcctgtgttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggtgcccaccaccatgcccggctaatt--------tttagtagagacagggtttcgccatgttggccagactggtcttgaactcctgacttcaagtgttccacccaccttggcctccc-aaaatgctgggattacaggcaggagccaccgtgcccagccCCTAAAACTA
i macFas5.chr6             I 2 C 0
s papAnu2.chr6             173138556 285 - 174439528 ggagacgttgtctcgctctgttgcccaggctggagtgcagtggcagagtctaggctctctgcaacctctgcctcctgggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggtgcccaccaccatgcccggctaatt--------tttagtagagacagggtttcgccatgttggccagactggtcttgaactcctgacttcaagtgttccacccaccttggcctccc-aaaatgctgggattacaggcaggagccaccgcgcccagcccctaatACTA
i papAnu2.chr6             I 2 C 0
s calJac3.chr2                141818 279 - 204313951 -gagatagagtctcgctccattgcccaggctggagtgcagtgacg-------------ctgtagccactgcctcccgggttcaagccattctcctgcctcagccttccaagtagctgggattacaggtgcccgccaccacgcctggctaatttttgtgtgtttagtagagatggggttttgccgtgttggccagactggtctcgaactcctgacctcaggtaatctgcccacctcagcttccc-aaagtgctgggattacaggcataagccactgtgcccagccCCTAAAACTA
i calJac3.chr2             C 0 C 0
e mm10.chr13                46075965   0 - 120421639 C
e canFam3.chr34             30164850 332 -  42124431 I
e chlSab2.chr4              89592488  54 -  91010382 I
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=5922.000000
s hg38.chr3_KI270935v1_alt     31411 3 +    197351 TTC
s panTro4.chr3                660720 3 - 202329955 TTC
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199681754 3 + 202140232 TTC
i ponAbe2.chr3             C 0 C 0
s macFas5.chr6             180260116 3 - 181584905 TTC
i macFas5.chr6             C 0 C 0
s papAnu2.chr6             173138841 3 - 174439528 TTC
i papAnu2.chr6             C 0 C 0
s calJac3.chr2                142097 3 - 204313951 TTC
i calJac3.chr2             C 0 C 0
s canFam3.chr34             30165182 3 -  42124431 TTC
i canFam3.chr34            I 332 C 0
e mm10.chr13                46075965 0 - 120421639 C
e chlSab2.chr4              89592488 54 -  91010382 I
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=111491.000000
s hg38.chr3_KI270935v1_alt     31414 72 +    197351 TTGATGATATTTCTGAGACT---ATTCA-------GTGGTCTTCTAAAATGCCGCCAGCAGAATGGAAA-ACGTATCCCCTAA
s panTro4.chr3                660723 69 - 202329955 TTTAT---ATTTCTGAGATT---ATTCA-------GTGGTCTTCTAAAATGCCACCAGCAGAATGGAAA-ACGTATCCCCTGA
i panTro4.chr3             C 0 N 0
s ponAbe2.chr3             199681757 72 + 202140232 TTTATGATATTTCTGAGACT---ACTCA-------GTGGTCTTCTAAAATGCCGCCAGCAGAATGGAAA-ACATATCCCCTAA
i ponAbe2.chr3             C 0 C 0
s macFas5.chr6             180260119 72 - 181584905 TTTATGATATTTCTGAGACT---ATTCA-------GTGGTCTTCTAAAATGCAGCTAGCAGAATGGAAA-ATGTATCCTCTAA
i macFas5.chr6             C 0 C 0
s papAnu2.chr6             173138844 72 - 174439528 TTTATGATATTTCTGAGACT---ATTCA-------GTGGTCTTCTAAAATGCACCCAGCAGAATGGGAA-ATGTATCCTCTAA
i papAnu2.chr6             C 0 C 0
s calJac3.chr2                142100 72 - 204313951 TTTATGATATTTCTGAGACT---ATTCA-------GTGGTCTTCTAAAATGCAGCCAGCAGAATGGAAA-ACACATCCCCTAA
i calJac3.chr2             C 0 C 0
s mm10.chr13                46075965 79 - 120421639 GGGGGGATATGTCCAAGTCT---CTTCATTATATTTTGGTCTTTTTAAGTAGAGTAAGTAAAACGAAAA-ATGTATTCTCTTA
i mm10.chr13               C 0 C 0
s canFam3.chr34             30165185 76 -  42124431 TTTGTGAGATTACTAAGATTTCATTTTA-------TCCGTTCTCTAAAATGCAGTCAGCAGAATGGAAAGACATGCCTCATAA
i canFam3.chr34            C 0 C 0
e chlSab2.chr4              89592488 54 -  91010382 I
e nomLeu3.chr11            120785647 3854 + 123690457 I

a score=39831.000000
s hg38.chr3_KI270935v1_alt         31486 38 +    197351 ATGGCTGGCCAACCTTAGCATATGGGACAGTGTGACCT
s panTro4.chr3_GL389630_random         0 37 +    103936 ATGGCTGGCCA-CCTTAGCATATGGGACAGTGTCACCT
i panTro4.chr3_GL389630_random N 0 C 0
s ponAbe2.chr3                 199681829 38 + 202140232 ATGGCTGGCCAATCTTAGCATATGGGACAGTGTCACCT
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180260191 37 - 181584905 ATGACTGGCCAACCTTAGCATAT-GGACAGTGTCACCT
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173138916 37 - 174439528 ATGACTGGCCAACCTTAGCATAT-GGACAGTGTCACCT
i papAnu2.chr6                 C 0 C 0
s calJac3.chr2                    142172 37 - 204313951 ATGGCTGGCCAACCTTAGCACAT-GGAGAATGTCACCT
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46076044 31 - 120421639 ATGGCTGACTGGATT---CACACTGGACTGATTT----
i mm10.chr13                   C 0 C 0
s canFam3.chr34                 30165261 28 -  42124431 ---GTTGG------TTCACATAT-GAAGAATGTGGCCT
i canFam3.chr34                C 0 C 0
e chlSab2.chr4                  89592488 54 -  91010382 I
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=750.000000
s hg38.chr3_KI270935v1_alt         31524 1 +    197351 C
s panTro4.chr3_GL389630_random        37 1 +    103936 C
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199681867 1 + 202140232 C
i ponAbe2.chr3                 C 0 C 0
s chlSab2.chr4                  89592542 1 -  91010382 C
i chlSab2.chr4                 I 54 C 0
s calJac3.chr2                    142209 1 - 204313951 G
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46076075 1 - 120421639 C
i mm10.chr13                   C 0 C 0
s canFam3.chr34                 30165289 1 -  42124431 C
i canFam3.chr34                C 0 I 17
e macFas5.chr6                 180260228 0 - 181584905 C
e papAnu2.chr6                 173138953 0 - 174439528 C
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=43428.000000
s hg38.chr3_KI270935v1_alt         31525 27 +    197351 TCTCACACAGAGCCA--CTAAAAACTAAA
s panTro4.chr3_GL389630_random        38 27 +    103936 TCTCACACAGAGCCA--CTAAAAACTAAA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199681868 27 + 202140232 TCTCACACAGAGCCA--CTAAAAACTAAA
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180260228 26 - 181584905 -CTCACACACAGCCG--CTAAAAACTAAA
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173138953 26 - 174439528 -CTCACACACAGCCG--CTAAAAACTAAA
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89592543 27 -  91010382 TCTCACACACAGCCG--CTAAAAACTAAA
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    142210 27 - 204313951 TCTCACACTGAGCCA--CTGAAAACTAAA
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46076076 29 - 120421639 ACTGACACCAGGTTAACCTTGGATATGGG
i mm10.chr13                   C 0 C 0
e canFam3.chr34                 30165290 17 -  42124431 I
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=30441.000000
s hg38.chr3_KI270935v1_alt         31552 27 +    197351 CACTAAAACCAGTTTTCTTGAGTAAAG
s panTro4.chr3_GL389630_random        65 27 +    103936 CACTAAAACCAGTTTTCTTGAGTAAAG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199681895 27 + 202140232 CACTAAAACCAGTTTTCATGAGTAAAG
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180260254 12 - 181584905 CGCTAAAACCAG---------------
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173138979 27 - 174439528 CACTAAAACCAGTTTTCTTGGGTAAAG
i papAnu2.chr6                 C 0 I 8902
s chlSab2.chr4                  89592570 12 -  91010382 CACTAAAACCAG---------------
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    142237 27 - 204313951 CACTAAAAGCACTTTTCTTGGGTAAAG
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46076105 26 - 120421639 GAGTTAGAGAAG-TTTCCTGAGGAAGG
i mm10.chr13                   C 0 C 0
s canFam3.chr34                 30165307 27 -  42124431 CATTAATACTAGTTTTCTTGAATAAGT
i canFam3.chr34                I 17 C 0
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=634779.000000
s hg38.chr3_KI270935v1_alt         31579 356 +    197351 GTTTCTAAGATGGAAAATTTAAGCAGTGAGATATGTCAAGTTGTAGACGTTGGCCAGGAAAAAGCCAGCATCA-----------------------------------ACCAGGCA-GGGGAGAGTGTGCAT-------------------------------------------------------CCGACATCC---TCCTGTG--TGATGAAGGGATGAC-ACCTCTTCCC------TCTGGGC----TGTCAGCCTTTA------------CTGTTCCAGGATACAGATCTCCTGATTCAGGTGTCCAGTGCCTTTTGAACT--GA--CCGCAAGCCCTCCTGGACGATTGGAACTGTAATGTGGAAAGGGCTCTGATGGAGCCGGTTAAAATGCTTCATTATTTGCAAAATACCACATACAGTAATACGATCTGGATGTCTTTCCCCTCCTCCACTAAGTAGCATAAGTGAAGA
s panTro4.chr3_GL389630_random        92 355 +    103936 CTTTCTAAGATGGAAAATTTAAGCAGCGAGATATGTCAAGTTGTAGACGTTGGCCAGGAAAAAGCCAGCAGCA-----------------------------------ACCAGGCA-GGGGAGAGTGTGCAT-------------------------------------------------------CCGACATCC---TCCTGTG--TGATGAAGGGATGAC-ACCTCTTCCC------TCTGGGC----TGTCAGCCTTTA------------CTGTTCCAGGATACAGATCTCCTGATTCAG-TGTCCAGTGCCTTTTGAACT--GA--CCGCAAGCCCTCCTGGACGATTGGAGCTGTAATGTGGAAAGGGCTCTGATGGAGCCGGTTAAAATGCTTCATTATCTGCAGAATACCACATACAGTAATACAATCTGGATGTTTTTCCCCTCCTCCACTAAGTAGCATAAGTGAAGA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199681922 355 + 202140232 TTTTCTAAGATGGAAAATTTAAGCAGCGAGATATCTCAAGTTGTAGATGTTGGCCAGGAAAAAGCCAGCAGCA-----------------------------------GCCAGGCA-GGGGAGAGTGTGCAT-------------------------------------------------------CTGACATCC---TCCTGTG--TGATGAAGGGATGAC-ACCTCTTCCC------TCTGGGC----TGTCAGCTTTTA------------CTGTTCCAGGATACAGATGTCCTGATTCAG-TGTCCAGTGCCTTTTGAACT--GA--CCGCAAGCCCTCATGGACAATTGGAACTGTAATGTGGAAAGGGCTCTGATGGAGCCAGTTAAAATGCTTCATTATTTGCAAAATACCACATACAGTAAAACGATCTAGATGTCTTTCCCCTTCTCCACTAAGTTGCATAAATTAAGA
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180260266 351 - 181584905 GTTTCTAAGATGGAAAATTTAGGCAGCAAGATGTGTCAAATTGTAGACATTGGCCAGGAAAAAGCCAGGAGCA-----------------------------------GCCAGGCA-GGGGAGAGTGTGCAT-------------------------------------------------------CCAGCATCC---TCCTGTG--TGATGAAGGAATGAC-ACCTCCTCCC------TCTGGGC----TGTCAGCTTTTA------------CTGCTCCAgaatacagatctcctgattcag-tgtccagtgccttttgaact--ga--ccacaAGCCCTCATGGACGACTGGAACTGTAATGTGGAAAGGGCTATGCTGGAGCCAGTTAAAATGCTTCATTACTTGCAAAATACCACATACAGTAATACGATATAGATGTCTT--CCCTTCTCCACTAAGTAG-ATAAA-TAAGA
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173147908 353 - 174439528 GTTTCTAAGATGGAAAATTTAGGCAGCGAGATGTGTCAAGTTGTAGACATTGGCCAGGAAAAAGCCAGGAACA-----------------------------------GCCAGGCA-GGGGAGAGTGTGCAT-------------------------------------------------------CCAGCATCC---TCCTGTG--TGATGAAGGGATGAC-ACCTCCTCCC------TCTGGGC----TGTCAGCTTTTA------------CTGCTCCAGAATACAGATCTCCTGATTCAG-TGTCCAGTGCCTTTTGAACT--GA--CCACAAGCCCTCATGGACGACTGGAACTGTAATGTGGAAAGGGCTATGCTGGAGCCAGTTAAAATGCTTCATTATTTGCAAAATACCACATACAGTAATACGATATAGATGTCTT-CCCCTTCTCCACTAAGTAG-ATAAATTAAGA
i papAnu2.chr6                 I 8902 C 0
s chlSab2.chr4                  89592582 354 -  91010382 GTTTCTAAGATGGAAAATTTAGGCAGCAAGATGTGTCAAATTGTAGACATTGGCCAGGAAAAAGCCAGGAGCA-----------------------------------GCCAGGCA-GGGGAGAGTGTGCAT-------------------------------------------------------CCAACATCC---TCCTGTG--TGATGAAGGGATGAC-ACCTCGTCCC------TCTGGGC----TGTCAGCTTTTA------------CTGCTCCAgaatacagatctcctgattcag-tgtccagtgccttttggact--ga--ccgcaAGCTCTCATGGACGACTGGAACTGTAATGTGGAAAGGGCTATGATGGAGCCAGTTAAAATGCTTCATTATTTGCAAAATACCACATACAGTAATACGATATAGATGTCTT-CCCCTTCTCCACTAAGTAGCATAAATTAAGA
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    142264 353 - 204313951 TTTTCTAAGATGGAATATTTAAG--ATAACATGTGGCAAGTTGTAGACGTTGGCCAGGAAAAAGCCAGGAGCG-----------------------------------GCCAGGCAGGGGGAGAGTGTGCAT-------------------------------------------------------CTGACATCC---TCCTGTGTATGATGAAGGGATGAC-ACCTCATCTT------TCTAGGC----CATCAGCTTTTA------------ATCTTCCAGAATACAGATCT-CTGATGCAG---TCCATTGCCTCTTGAACT--GA--CCGCAAACCCTCGTGGACAATCGGAACTGTAATGTGGAAAGGGCTGTGATGGAGCCAGTTAAAATGCTTCATTATTTGCAGAATACCACATACAGTAATACAATGTAGTTGTCTTTCCCACTCTCTACTAAGTAGCATAAATTAAGA
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46076131 318 - 120421639 ----CTAAGGGTAACCAGTCAGG--------------------------------GAGAACAGGCCTG-------------------------------------------ATCCA-TGAGAGGGTGTGTGG-------------------------------------------------------CTAAAGTCTCGGTTATATA--TGCTAAAGGCATTATGATTTCATCCCTAAGGTTAAGGGT----TACCTTGTTTCAATAAGGAGTAGCCTGTTCCAGAGGACAAGTCTCCCAGTATGC-TCTCTAGTTCATTTT---CTTAAA--ACAAAAGTCTTGAAGGACATGCAGAGAGCCAATATGGGAAGGGTTAAGATGGAGCCAGTAAAAATGCTTCA-TATTTAGAAAACACAGCA------------ATATGGATTTCTTTGCCATTCTTTACTGAGTTA-ACAGAATAATA
i mm10.chr13                   C 0 C 0
s canFam3.chr34                 30165334 444 -  42124431 GTTTATAGAGTGGgacatttaagcca-aaccttgggagagttgtagaagttagccagggaaaggccagaggcaagtgtccagacagagggaacagcaCCGTGGAGTATGACAGACA-AGAGAGGATGTGCCTAAAGCCCAGAACAGATGTGGAGAGTGGTAAAGCAGGTCTGTGATCACCTCTGGGCCTGGAGTCC---TCACATTAAGAGTGGAGGGATGAT-CCCACTGGTG------CCTAGGCGTCACAACAAGCAATA--------GAGCCTCTTCTAGAAAACGGATCTCCCACTACAC-TGTCCAGTGCTTTTCTAAAT--GAAGCACAAAACCTTGCAGAACATGTGGTGCTCTAGGGTGAAGAG------GATGGATCCCGTAAAAGTGCTTCATTGTTTGCAAACTACCACTTTC------GCAAAATGTAAATCTTTCCCATTCTCCACTAAGAATCATAAATTCAGG
i canFam3.chr34                C 0 I 225
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=31826.000000
s hg38.chr3_KI270935v1_alt         31935 21 +    197351 CTTCCCAGAGGAAGTGCGTCT
s panTro4.chr3_GL389630_random       447 21 +    103936 CTTCCCAGAGGAAGTGCACCT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199682277 21 + 202140232 TTTCACAGAGGAAGTGTGCCT
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180260617 21 - 181584905 CTTTACAGAGGAAGTGTGCCT
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173148261 21 - 174439528 CTTTACAGAGGAAGTGTGCCT
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89592936 21 -  91010382 CTTTACAGAGGAAGTGTGCCT
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    142617 21 - 204313951 CTTTACGGGGGAAATGTGCCT
i calJac3.chr2                 C 0 I 193
s mm10.chr13                    46076449 14 - 120421639 TTCTGCAAAGCAAG-------
i mm10.chr13                   C 0 C 0
e canFam3.chr34                 30165778 225 -  42124431 I
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=11655.000000
s hg38.chr3_KI270935v1_alt         31956 6 +    197351 TTTTCA
s panTro4.chr3_GL389630_random       468 6 +    103936 TTTTCA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199682298 6 + 202140232 TTTTCA
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180260638 6 - 181584905 TTTTCA
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173148282 6 - 174439528 TTTTCA
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89592957 6 -  91010382 TTTTCA
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    142831 6 - 204313951 ttttca
i calJac3.chr2                 I 193 C 0
e mm10.chr13                    46076463 0 - 120421639 C
e canFam3.chr34                 30165778 225 -  42124431 I
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=1634261.000000
s hg38.chr3_KI270935v1_alt         31962 844 +    197351 TCTCGTATCTGAGTCAGTGAGTATCCTTTTTGGAAACAAGCTTCATCCTGG-------TTTTCTAGAGTGCCAAGTCAGGGTGGAAAGGAGGACCTGGGGGCTCAGTCCTTCCTTGCCCCTTGGGCTGCCCTTCAGGGTTAAA------TAGAGGGTCCCAGCTGAGCTCTCTGGATGCAC-AGGAGCACCTGGGTACATAAGAAGGTGAACAGTTTTCAAGGGGAAGTTTGAATTACTATCCCCCACAGCATTTGTTCCTTCAGGACAC-TAACCCTCTGGATCTGTGTCTTCTGTGTCTCCAGTGGCCAACAGTGTTGCAAACAGGAACCCGAGGTGTTCACTTCACTGTTGA-AGGAACGAGAGGGCATCTGCTAAAGTTTCAGATTCCGTAAGTTCAT-GCTTTTTGTTCCATTATAAATGA-TTTTT------------------------------------------------------------------------TTGGC------------------------------TTGGGG--GTAAGGATCTATACCAGT----------------------TTGTTTT-------------------------CATATGAGTCATAGACA---------TAAGGGAAAAATTTCTCAT---AGGTATCCAATGCATGCTGAAATTATTTTCAGTGTAATAATACTTAATTGCAAGTACCAATATAAACATAGATGTTAACA-TTTTTACTTGTATCTGTT-ATGTATCTATAAATTAGATTTAAATTTAGGTCAA---GTAAAGCAATAAAT-----TAA---------A--------ATGAACAGTATCTGCTGTGATAGATGATAAAA-TCCTACTGAAAAGAGGACCGTGGGGCCCTTCCGGTGTGGGTTCCTTGGTATTGAGTGTGCCTGT-TCTCTCTCTGTTGGAAA-ACT--GAAACGTGCTGAGAAGTTCTTTTCTCATAAGCTCACAATAGCGACTGAATGCTCCTTGGTACCTTCTCAGGCATAA--------GCATAGGC-------------ACGGCCCT
s panTro4.chr3_GL389630_random       474 844 +    103936 TCTCGTATCTGAGTCAGTGAGTATCCTTTTTGGAAACAAGCTTCATCCTGG-------TTTTCTAGAGTGCCAAGTCAGGGTGGAAAGGAGGACCTGGGGGCTCAGTCCTTCCTTGCCCCTTGGGCTGCCCTTCAGGGTTAAG------TAGAGGGTCCCAGCTGAGCTCTCTGGATGCAC-AGGAGCACCTGGGTACATAAGAAGGTGAACAGTTTGCAAGGGGAAGTTTGAATTACTAtcccccacagcatctgttccttcaggacac-taaccctctggatctgtgtcttctgtgtctccagtggccaacagtgttgcaaacaggaacccgaggtgttcacttcactgttga-aggaacgaGAGGGCATCTGCTGAAGTTTCAGATTCCGTAAGTTCAT-GCTTTTTGTTCCATTATAAATGA-TTTTT------------------------------------------------------------------------TTGGC------------------------------TTGGGG--GTAAGGATCTATACCAGT----------------------TTGTTTT-------------------------CATATGAGTCATAGACA---------TAAGGGAAAAATTTCTCAT---AGGTATCCAATGCATGCTGAAATTATTTTCAGTGTAATAATACTTAATTGCAAGTACAAATATAAACATAGATGTTAACA-TTTTTACTTGTATCTGTT-ATGTATCTATAAATTAGATTTAAATTTAGGTCAA---GTAAAGCAATAAAT-----TAA---------A--------ATGAACAGTATCTGCTGTGATAGATGATAAAA-TCCTACCGAAAAGAGGACCGTGGGGCCCTTCCGGTGTGGGTTCCTTGGTATTGAGTGTGCCTGT-TCTCTCTCTGTTAGAAA-ACT--GAAACTTGCTGAGAAGTTCTTTTCTCATAAGCTCACAACAGCGACTGAATGCTCCTTGGCACCTTCTCAGGCATAA--------GCATAGGC-------------ACGGCCCT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199682304 830 + 202140232 TTTCGCATCTGAGTCAGTGAGTATCCTGTTTGGAAACAAGCTTCATCCTGG-------TTTTCTAGAGTGCCAAGTCAGGGTGGAAAGGAGGACCTGGGGGCTCAGTCGTTCCTTGCCCCTTGGGCTGCCCTTCAGGGTTAAG------TAGAGGGTCCCAGCTGAGCTCTCTGGATGCAC-AGGAGCACCTGGATACGTCAGAAGGGGAACAGTTTGCAAGGGGAAATTTGAATTACTGTTCCCCACAGCATTTGTTCCTTCAGGACAC-TAACCCTCTGGATCTGTGTCTTCTGTGTCTCCAGTGGCCAACAGTGTTGCAAACAGGAACCCGAGGTTTTCACTTCACTGTTGA-AGGAACACGAGGGCATCTGCTAAAGTTTCAGGTTCCGTAAGTTCAT-GCTTTTTGTTCCATTATAAATGA-TTTTT------------------------------------------------------------------------TTGGC------------------------------TTGGGG--GTAAGGATCTATA-CAGT----------------------TTGTTTT-------------------------CATATGAGTCATC-ACA---------TAGGAGAACAATTTCTCAT---AGGTATCCAATGCATGCTGAAATTATTTTCAGTGTAATACTACTTAATTGCAAGTCCAAATATAAACATAGATGTGAACA-TTTTTAC-TGTATCTCTT-ATGTATCTATAAACTAGATTTAAATTTAGGTCAA---GTAAAGCAATAAAT-----TAA---------A--------ATGAACAGTATGTGCTGTGATAGATGATAAAA-TCCTACTGAAAATAGGACCGTGGGGCCCTTCCGGTGTGGGTTCCTTGGTATTGAGTGTGCCTGT-TCTCTCTCTGTTGGAAA-ACC--GAAAC-----------TTCTTTTCTCATAAGCTCACAATAGCGACTGAATACTCCTTGGCACCTTCTCAGGCATAA--------GCATAGGC-------------AAGGCCCT
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180260644 843 - 181584905 TGTGGCATCTGAGTCCGTGAGTGTCCTGTTTGGAAACAGGCTTCATCCTGG-------TTTTCTAGAGTGCTGAGTCGGGGCGGAAAGGAGGACC-GGGGGCTCCGTCCTTCCTCGCCCCTTGGGCTGCCCTTCAGGGTTAAG------TGGAGAGTCCCAGCTGAGCTCCCTGGATGCAC-AGGAGCACCTGGGTACCTAAGAAGGGGAACAGTTTGCAAGGGGAAGTTTAAATTACTGTCCCCCATAGCATCTGTTCCTTCAGGACAC-TAACCCTCTGCATCTGCGTCTTCTGTGTCACCAGTGGCCAGCAGTGTTGCAAACAGGAACCCGAGGTTTTCACTTCACTGTTGATGGGAACAAGAGGGCATCTGCTAAAGTTTCAGATTCCGTAAGTTCAT-GCTTTTTGTTCCATTATAAATGATTTTTT------------------------------------------------------------------------TTGGC------------------------------TTGGGG--GTAAGGATCTGTACCAGT----------------------TTCTTTT-------------------------CATATGAGTCATAGACA---------TAAGAGAAAAATTTCTC-----AGGTGTCCAACACATGCTGAAATTATTTTCAGTGTTATAATAATCAATTGCAAGTACAAACACAAACATAGATGTTAGCA-TTTTTACTTATATCTCTTAATGTATCTATAAACTAGATCTAAATTTAGATCAA---GTAAAGCAATAAAT-----TAA---------A--------ATGAACAGTATCTGCTGTGATAGATGATAAAATTCCTACTGAAATGAGGACTGTGGGGCCACTCAGGTGTGGGTTCCTTGGTATTTGGCGTGCCTGT---TCTCTCTGTTGGAAA-ACT--GAAACTTGCTGAGAAGTTCTTTTCTCGTAAGCTCACGATAGCGACTGAATGCTCCTTGGCAGCTTCTCAGGCATAA--------GCAGAGGC-------------GCGGCCCT
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173148288 843 - 174439528 TGTGGTATCTGAGTCAGTGAGTGTCCTATTTGGAAACAGGCTTCATCCTGG-------TTTTCTGGAGTGCCGAGTCGGGGCGGAAAGGGGGACC-GGGGGCTCCGTCCTTCCTCACCCCTTGGGCTGCCCTTCAGGGTTAAG------TAGAGAGTCCCAGCTGAGCTCCCTGGATGCAC-AGGAGCACCTGGGTACATAAGAAGGGGAACAGTTTGCAAGGGGAAGCTTAAATTACTGTCCCCCATAGCATCTGTTCCTTCAGGACAC-TAACCCTCTGCATCTGTGTCTTCTGTGTCACCAGTGGCCAGCAGTGTTGCAAACAGGAACCCGAGGTTTTCACTTCACTGTTGATGGGAACAAGAGGGCATCTGCTAAAGTTTCAGATTCCGTAAGTTCAT-GCTTTTTGTTccattataaatga-ttttt------------------------------------------------------------------------ttggc------------------------------TTGGGG--GTAAGGATCTATACCAGT----------------------TTGTTTT-------------------------CATATGAGTCATAGACA---------TAAGAGAAAAATTTCTCAT---AGGTATCCAACGCATGctgaaattattttcagtgttaTAATAATCAATTGCAAGTACAAACACAAACATAGATGTTAGCA-TTTTTACTTATATCTCTT-ATGTATCTATAAACTAGATTTAAATTGAGATCAa---gtaaagcaataaaa-----taa---------a--------atgaacagtaTCTGCTGTGATAGATGATAAAATTCCTACTGAAATTAGGACTGTGGGGCCACTCAGGTGTGGGTTCCTTGGTATTTGGCGTGCCTGT---TCTCTCTGTTGGAAA-ACT--GAAACTTGCTGAGAAGTTCTTTTCTCGTAAGCTCACAATAGCGACTGAGTACTCCTTGGCACCTTCTCAGGCATAA--------GCACAGGC-------------GCGGCCCT
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89592963 845 -  91010382 TGTGGTATCTGAGTCAGTGAGTATCCTGTTTGGAAACAGGCTTCATCCTGG-------TTTTCTAGAGTGCCGAGTTGGGGTGGAAAGGAGGACT-GGGGGCTCAGTCCTTCCTCGCCCCTTGGGCTGCCCTTCAGGGTTAAG------TAGAGAGTCTCAGCTGAGCTCCCTGGATGCAC-AGGAGCACCTGGGTACATAAGAAGGGGAACAGTTTGCAAGGGGAAGTTTAAATTACTGTCCCCCATAGCATCTGTTCCTTCAGGACAC-TAACCCTCTGCATCTGTGTCTTCTGTGTCACCAGTGGCCAACAGTGTTGCAAACAGGAACCTGAGGTTTTCACTTCACTATTGATGGGAACAAGAGGGCATCTGATAAAGTTTCAGATTCCGTAAGTTCAT-GCTTTTTGTTCCATTATAAATGA-TTTTT------------------------------------------------------------------------TTGGC------------------------------TTGGGG--GTAAGGATCTGTACCAGT----------------------TTCTTTT-------------------------CATATGAGTCATAGACA---------TAAGAGAAAAATTCCTCAT---AGGTATCCAACGCATGCTGAAATTATTTTCAGTGTTATAATAATCAATTGCAAGTACAAACACAAACATAGATGTTAACA-TTTTTACTTATATCTCTT-ATGTGTCTATAAACTAGATTTAAATTTAGATCAA---GTAAAGCAATAAAA-----TAA---------A--------ATGAACAGTATCTGCTGTGTTAGATGATAAAATTCCTACTGAAATTAGGACTGTGGGGCCACTCAGGTGTGGGTTCCTTGGTATTTAGTGTACCTGT-TCTCTCTCTGTTGGAAA-ACT--GAAACTTGCTGAGAAGTTCTTTTCTCGTAAGCTCACAATAGCGACTGAATACTCCTTGGCACCTTCTCAGGCATAA--------GCATAGGC-------------ATGGCCCT
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    142837 834 - 204313951 TTTTGTATCTGAGTCAGTGAGTATCCTGTTTGGAAACACGCTTCGTCCTGA-------TTTTCTAGAGTGCTAAGTCA-GGTGGAAAGGAGGAACTGGGGACTCAGTCCTTCCTTGCCCCTTGGGCTGCCCTTCAGGGTTAAG------TAGAGGGTTCCAGCTGAACTCTCTGGATGCAC-AGGAGCCCCTGGGTACATAAAAAGGTGACCAGTTTGCAAGGCAGAATTTGAATTA-TATCCCCC-CAGCATTTGTTCCTTCAGGACAC-TGACCCTCTGGATCTGTGTCTTCTGTGTCTCCAGTGGCCAGCAGTGTCACCAACGGGAACCCGAGGTTTTCACTTCACTGTGGATGGGAACAAGAGGGCATCTGCTAAAGTTTCAGAATCCGTAAGTTCAT-GCTTTTTGTTCCATTATAAATGA-TTTTT------------------------------------------------------------------------TTGGC------------------------------TTGGGG--GGAGGGATCTATACCAGT----------------------TTGTTTC-------------------------CATATGAGTCATAGACA---------TAAGAGGAA---TTCTCA----AGGCATCCAGTGCATGCTCAAATGATTTTCAGTGTAAT-------AATTGCAGGTACAAGCATAAACATAGGTGCTAACA-TTTGTACTTATATCTTGT-ATGTATCTGTAAACTAGATTTCCATTTAGATCAA---GTAAAGCAATAAATTAAAGTAA---------A--------ATGAACAGTGTCTGCTGTGACAGATGATAAGATCCCCACTGCAGATAGGACGGTGTGGCCATGTGGGTAT---TTCTTTGGTATTCGGTGTGCGTGT-TCTCTCTCTGTTGGAAA-ACT--GAAGCTTGCTGAGAAGTTCTTTTCTCTTCTGCTCCTGATAGCAACTGAATACTCCATGGCACCTTCTCAGCTATGA--------GCATAGGC-------------ACGGCCCT
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46076463 950 - 120421639 -----------GGTCAGT-AGTACCCTATTGGGAAACAGGCT--GTTTTGGAAAAGGCTTTCCTAGAATGCCAAGTTA-----GTAGAGAGGAC--AAGACCTAAGTCTTTGCCTCTTTCTTAGTC--------------------------AGGGTCCCAGGTAAACTTTCTACAAGAAT-GAAAACAACTTGATATATAGGAAAGTTAACAATTTAGAAGGAAAATTCTAATTCATT----CCTTCTGTTTCTGTT-CTTCAAGAC-C-TAACACTGT-----------TTATTTCCCTGCAGTGGCCAGGAACACTCCAAAAACAGACCTGCGGCTTTCACTTCTCTGTTGGTGAGAACAAGAAGGCATCAGCTAAAGTTTCAGATGCAGTAAGTTTA-------ATGCTCAATTATAAACAA-TTTTTGTttttgttttattcaagtcaatgtctcgctatgtagctctggctggcctgggatttgttatgtagatcaggctggcctcaaactcacagaaatccatctaactctgttggga--ttaaaggtgtgcaccattaagcccagctTGCAAACGTTTCTTGTTTTGAAGGATTATGATCTAATTTTAATATATTTGAATATTGGACA-----TATTTAAAGGAAAGattttttttaaaaaatattaattGTATGCTCAAAT-GTGTGTAGTGTAAT-------ACTTACAA----AAATACTAACATAAATACTGACA-TTTTTGCTGGCAAATCTT----TATC--TAAACTAAACTCTAAAT----TCAA---GTAAAGTAACAAAA-----TAAGAAAATATTA--------ATGAGCTGTATATGCTGTGATGAACTGTGGAATTCCTGCACAAAATAAGACTAT--GGCCACTGGAGTTGAGACTCCTCTGTATTTAGC---CTCTT-TTGCTTTCTGTTTAAAA-AATACGAACATTACTCACAAGTTTTTATCATATGAACTAGTAA-GGTTATAGAATATTGCTTGACAATTTCTCAGCAATAAATCTTCGCACACAGACCTTCTCCTTAAATATAAACTT
i mm10.chr13                   C 0 C 0
s canFam3.chr34                 30166003 800 -  42124431 TCTCCTGTCTGAGTCTATGAGTGTCCTGTTTGGAAACAGGCTTCATCCTGA-AGGGATTTTCCTGGGGTGCCAAGTCT------------------------TTAGCCCTTCC------------CTAGCCTTCAGGGTTAAGTACCTCTACTTAACCCCAGCTGAGCTTTCTAGGTGAACGGGGAGCACCTGGGTACTTGAAGAGGTTGACAACTT--AAGGGGAAATTTTGGTCACTAGTCCCC--------TGTT----TAAGACACTTAGTGCTCTCCATCTGTGTCT-------CAGCAGTGGCCGGCGGCATGGCAGACAGGCACCCGCAGTTTTCACTTCACCATTGATGGGAATAAGAGGTCCTCTGCTAAAGTTTCAGATTCAGTAAGTTCACAATTTTTTGTTCCCTTATAAGTGA-TATCA------------------------------------------------------------------------TTGGC------------------------------TTAGAGGTGTAACGATCTATACCAGT----------------------TTTCAGT------------------------ATattggaataacacacagttcttatttaaaggaaaaaattctcat--------tccaatg-atgctcaaattatttttagcat-atagtacttaattg----tacaaatataagcatagttgttaacactttttgcttgcagtttgt-aggtatcta-aaaccagagtaaactttcaatcaaagcacaaaataatagaa-----tga---------aaatgacagatgaacattatttactgtgacgagtgaCA----------------TAGAACTGTGAAGCCACTCCAGTGTAGGCTCTCT-GTGTTTACCGGTCCCATCTTATTCTCTGCTGAAGACACT--AAAATGTGTTCACAGGTTGTTTTCTCATAAGCTCACAGTAGTTACTGAATGCTG-GTGGTACCTTCTCAGTCAAAC--------TCAGGGTT-------------CCATTCCT
i canFam3.chr34                I 225 I 246
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=37596.000000
s hg38.chr3_KI270935v1_alt         32806 17 +    197351 GAAGTAGAGTTGTGGTC
s panTro4.chr3_GL389630_random      1318 17 +    103936 GAAGTAGAGGTGTGGTC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199683134 17 + 202140232 GAAGTAGAGTTGTGGTC
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180261487 17 - 181584905 GAAGTAGAGTTGTGGTC
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173149131 17 - 174439528 GAAGTAGAGTTGTGGCC
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89593808 17 -  91010382 GAAGTAGAGTTGTGGTC
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    143671 17 - 204313951 GAGGTAGAGCTGGGGTC
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46077413 17 - 120421639 GAAATATAGTTGTGGTC
i mm10.chr13                   C 0 I 504
e canFam3.chr34                 30166803 246 -  42124431 I
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=12033.000000
s hg38.chr3_KI270935v1_alt         32823 6 +    197351 CTCAGT
s panTro4.chr3_GL389630_random      1335 6 +    103936 CTCAGT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199683151 6 + 202140232 CTCAGT
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180261504 6 - 181584905 CTCAGT
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173149148 6 - 174439528 CTCAGT
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89593825 6 -  91010382 CTCAGT
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    143688 6 - 204313951 CTCAGT
i calJac3.chr2                 C 0 I 362
e mm10.chr13                    46077430 504 - 120421639 I
e canFam3.chr34                 30166803 246 -  42124431 I
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=14964.000000
s hg38.chr3_KI270935v1_alt         32829 9 +    197351 CTGATCCCA
s panTro4.chr3_GL389630_random      1341 9 +    103936 CTGATCCCA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199683157 9 + 202140232 CTGATCCCA
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180261510 8 - 181584905 CTGAT-CCA
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173149154 9 - 174439528 CTGATCCCA
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89593831 9 -  91010382 CTGATCCCA
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    144056 9 - 204313951 CTGATCCCA
i calJac3.chr2                 I 362 C 0
e mm10.chr13                    46077430 504 - 120421639 I
e canFam3.chr34                 30166803 246 -  42124431 I
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=73293.000000
s hg38.chr3_KI270935v1_alt         32838 37 +    197351 TGGAATAGA--CCCTCTACCATTCATAGAATCTGATTAT
s panTro4.chr3_GL389630_random      1350 37 +    103936 TGGAATAGA--CCCTCTACCATTCATAGAATCTGATTAT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199683166 37 + 202140232 TGGAATAGA--CCCTCTACCATTCATAGAATCTGATTGT
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180261518 37 - 181584905 TGGGACAGA--CCCTCTACCATTCATAGAATCTGATTGT
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173149163 37 - 174439528 TGGGACAGA--CCCTCTACCATTCTTAGAATCTGATTGT
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89593840 39 -  91010382 TGGGACAGATCCCCTCTACCATTCATAGAATCTGATTGT
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    144065 37 - 204313951 TGGGCTAGG--CCCTCTACCATTCATAGAATCTGATTGT
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46077934 37 - 120421639 tgtAGCAGT--CCATCTATTGTTCATGAAGTCTGACTGC
i mm10.chr13                   I 504 C 0
e canFam3.chr34                 30166803 246 -  42124431 I
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=1226498.000000
s hg38.chr3_KI270935v1_alt         32875 610 +    197351 CAGTCCCT--------------------------------------------TCTCCAGGTGC------GAATGTGCCTACTTC--TCCCTGCACTGTTCAGGG--------CTCAGCCCCAGGACAGGATGGAGG-CCCTG-----TGTGCCCAGCAGTTGCTCCTT-T-TATCTTTGTC----------AAGCTCTTTCACTGGCACAAGAGTCTTCATGTTTGGCATAGTGGAACCTGTGCTTGACAGGTGAATTTTTCTTTTCCAGATTTCTGCTCAGTATCCAGTAGTGGATCATGAATTTGATGCAGTGGTGGTAGGCGCTGGAGGGGCAGGCTTTGCGAGCTGCATTTGGCCTTTCCGAGGCAGAGTTTGATACAGCATGTGTTACCAAGCTGTTTCCTACCAGGTCACACACTGTTGCAGCGCAGGTAAGAGAAAG-GTGCCCCACTGTGCTCCCACTCCGTGCAGGTCCCGCGCAGCCTCGCACTTTCTACCTGGGCAGCCTCCTGCCTCCTCCCTGTGC---TCCAGCCACT-----TGGCCTCTTGCTGTGCCTT----ACT--CAGCTCACCCATTCAGGG-GTCTCTCCCTGGA--GCCTCTTCCCTGGGGACTTTGAAGGGCGGGAGCCTTGTTGTCACTCTTAATTCAGACTCCAGTCACACTTGGGTTTTCTCTGACCATC---------------------------------------------------------------TACCCTCCC---
s panTro4.chr3_GL389630_random      1387 602 +    103936 CAGTCCCT--------------------------------------------TCTCCAGGTGC------GAATGTGCCTACTTC--TCCCCGCACTGTTCAGGG--------CTCAGCCCCAGGACAGGATGGAGG-CCCTG-----TATGCCCAGCAGTTGCTCCTT-T-TATCTTTGTC----------AAGCTCTTTCACTGGCACAAGAGTCTTCATGTTTGGCATAGTGGAACGTGTGATTGACAGGTGAATTTTTCTTTCCCAGATTTCTGCT-------CAGTAGTGGATCATGAATTTGATGCAGTGATGGTAGGCGCTAGAAGGGCAGGC-TTGCGAGCTGCATTTGGCCTTTCCGAGGCAGAGTTTGATACAGCATGTGTTACCAAGCTGTTTCCTACCAGGTCACACACTGTTGCAGCGCAGGTAAGAGAAAG-GTGCCCCACTGTGCTCCCACTCCGTGCAGGTCCCGCACAGCCTCGCACTTTCTACCTGGGCAGCCTCCTGCCTCCTCCCCGTGC---TCCAGCCACT-----TGGCCTCTTGCTGTGCCTT----ATT--CAGCTCACCCATTCAGGG-GTCTCTCCCTGGA--GCCTCTTCCCTGGGGACTTTGAAGGGCGGGAGCCTTGTTGTCACTCTTAATTCAGACTCCAGTCACACTTGGGTTTTCTCTGACCATC---------------------------------------------------------------TACCCTCCC---
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199683203 676 + 202140232 CAGTCCCT--------------------------------------------TCTCCAGGTGC------GAATGTGCCCACTTC--TCCCCGCACTGTTCAGGG--------CTCAGCCCCAGGACAGGATGGAGG-CCCTG-----TGTGCCCAGCAGTTGCTTGTT-T-TATCTTTGTC----------AAGCTCTTTCACTGTCACAAGAGTCTTCATGTTTGTCATAGTGGAACATGTGATTGACAGGTGAATTTTTCTTTTCCAGATTTCTGCTCAGTATCCAGTAGTGGATCATGAATTTGATGCAGCGGTGGTAGGCGCTGGAGGGGCAGGC-TTGCGAGCTGCATTTGGCCTTTCCGAGGCAGGGTTTAATACGGCATGTGTTACAAAGCTGTTTCCTACCAGGTCACACACTGTTGCAGCGCAGGTAAGAGAAAG-GTGCCCCACTGTGCTCCCACTCCGTGCAGGTCCTGCACAGCCTCACACTTTCTACCTGGGCAGCCTCCTGCCTCCTCCCCGTGC---TCCAGCCACA-----TGGCCTCTTGCTGTGCCTTACTCACT--CAGCTCACCCTCTCAGGG-GTCTCTCCCTGGA--GCCTCTTCCCTGAGGACTTTGAAGGGCGGGAGACTTGTTGTCGGTCTTAATTGAGACTCCAGTCACACTTGGGTTTTCTCTGACCATCTCGCCTGCTACCCTCCCCACCCACCCCTCCTTCCCCAACACCTTCTCTGACCATCTCGCCTGGTACCCTCCC---
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180261555 621 - 181584905 CAGTCCCT--------------------------------------------TCTCCACGTGC------GAATGTGCCCACCTC--TCCCTGCACTGTTCAGGG--------CTCAGCCCCAGGACAGGATGGAGG-CCCTG-----TGTGCCTAGCAGTTGGTCCTT-T-TGTCTTTGTC----------AAGCTCCTTCACTGTAACAAGAGTCTTCGTGGTTGGCATAGTGGAGCACGTGATTGACAGGTGCGTTTTTCTTTTCCAGATTTCTGCTCAGTATCCAGTAGTGGATCATGAATTTGATGCGGTGGTGGTAGGCGCTGGAGGGGCAGGC-TTGCGAGCTGCATTTGGCCTTTCTGAGGCAGGGTTTCATACAGCATGTGTTACAAAGCTGTTTCCTACCAGGTCACACACTGTTGCGGCACAGGTAAGAGAAAG-GTGCCCCACCGTGCTCCCACTCTGTGCAGGTCCCGCACAGCCTTGCGCTTTCTACCTGGGCAgcctcctgcctcctccccatgc---tccagccaca-----tggcctcttgcTGTGCCTTGCTCACT--CAGCTCACCCTCTCAGCG-GTCTTTCCCTGGA--GCCTCTTCCCTGGAGACTTGGAAGGGCTGGAGCCTTGTTGTCACTCCTAGTTGGGACTCCAGTCACACTCGGGTTTTCTTTGACCATCTCGCCTAC-------------------------------------------------------TTCCCTCCC---
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173149200 618 - 174439528 CAGTCCCT--------------------------------------------TCTCCACGTGC------G-ATGTGCCCACCTC--TCCCCGCACTGTTCGGGG--------CTCAGCCCCAGGACAGGATGGAGG-CCCTG-----TGTGCCTAGCAGTTGGTCCTT-T-TGTCTTTGTC----------AAGC-CCTTCACTGTAACAAGAGTCTTCGTGGTTGGCATAGTGGAGCACGTGATTGACAggtgcatttttcttttccagatttctgcTCAGTATCCAGTAGTGGATCATGAATTTGATGCAGTGGTGGTAGGCGCTGGAGGGGCAGGC-TTGCGAGCTGCATTTGGCCTTTCTGAGGCAGGATTTAATACAGCATGTGTTACAAAGCTGTTTCCTACCAGGTCACACACTGTTGCGGCGCAGGTAAGAGAAAG-GTGCCCCACCGTGCTCCCACTCTGTGCAGGTCCCGCACAGCCTTGCGCTTTCTACCTGGgcagcctcctgcctcctccccatgC---TCCAGCCACA-----TGGCCTCTTGCTGTGCCTTGCTCACT--CAGCTCACCCTCTCAGC--GTCTTTCCCTGGA--GCCTCTTCCCTGGAGACTTGGAAGGGCTGGAGCCTTGTTGTCACTCCTAGTTGGGACTCCAGTCACACTCGGGTTTTCTTTGACCTTCTCGCCTAc-------------------------------------------------------taccctccc---
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89593879 620 -  91010382 CAGTCCCT--------------------------------------------TCTCCACGTGC------GAATGTGCCCACTTC--TCCCTGCACTGTTCAGGG--------CTCAGCCCCAGGACAGGATGGAGG-CCCTG-----TGTGCCTAGCATTTGCTCCTT-T-TGTCTTTGTC----------AGGCTCCTTCACTGTAACAAGAGTCTTCGTGTTTGGCATAGTGGAGCACGTGATTGACAGGTGCATTTTTCTTTTCCAGATTTCTGCTCAGTATCCAGTAGCGGATCATGAATTTGATGCAGTGGTGGTAGGCGCTGGAGGGGCAGGC-TTGCGAGCTGCATTTGGCCTTTCTGAGGCAGGGTTTAATACCACATGTGTTACAAAGCTGTTTCCTACCAGGTCACACACTGTTGCAGTGCAGGTAAGAGAAAG-GTGCCCCACCGTGCT-CCACTCTGCGCAGGTCCCGCCCAGCCTTGCGCTTTCTACCTGGGCAgcctcctgcctcctccccatgc---tccagccaca-----tgacctcttgcTGTGCCTTGCTCACT--CAGCTCACCCTCTCAGCG-GTCTTTCCCTGGA--GCCTCTTCCCTGGAGACTTGGAAGGGCTGGAGCCTTGTTGTCACTCCTAGTTGGGACTCCAGTCACACTTGGGTTTTCTTTGACCTTCTCGCCTAC-------------------------------------------------------TACCCTCCC---
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    144102 616 - 204313951 CAGTCCCT--------------------------------------------TCTCCACGTGT------GGACGTGCCCACCTC--TTCCCGCACTGTTCAGTG--------CTCAGCCCCGGGACAGGATGGAGG-CCTTG-----TGGGCCTAGCAGTTGCTCCTT-T-TATCCTTTTC----------AAGCTCTTGAACT--AACCATAGTCTTCGTGTTTGGCATAGTGGAATATGCGATTGGCAGGTGAATTTTTATTTTCCAGATTTCTGCTCAGTATCCAGTAGTGGACCATGAATTTGATGCCGTGGTGGTGGGCGCTGGAGGGGCAGGC-CTGCGAGCTGCGTTTGGGCTTTCTGAGGCAGGGTTTAATACAGCATGTGTTACCAAGCTGTTTCCCACCAGGTCACACACTGTTGCAGCCCAGGTAAGAGAAAG-GTGCCCCGCCACGCTCTCACTGCCTGCATGT-CTGCCCAGCCTTGCGCCTTCCACCCGGGCGGCCTCCTGCCTCCTCCCCATGC---TTCAGCCACA-----TGGCCTCTTGCTGTGCATTGCTCTCT--CAGCT--CCCTCTCAGGG-GTTTTTGCCTGGA--GCCTCTTCCATGGGGACTTTGAAGAGCTGGAGCCTTGCTGTCACTCTTAATTGGAACTTCAGTCACAGCTGGGTTTTCTCTGACCATCTCGCCTAC-------------------------------------------------------TACCCTCCC---
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46077971 554 - 120421639 TGGTTCAT--------------------------------------------TGTAC-------------------CACACTTCAACACCAAGAATGCACA-----------CTCAG-ATCAGAACAGGATTGAAA-GCCTTCTTTCTGTGCACAGCAGCTATTCTTTCC-TGTGATTATT---------------------TTGTAATTATAGTCTTGATGTTTTATGAAGTTAAATATGTAACAAATAGCTGAA--TTTCCTTTTCAGATTTCTACTCAATACCCAGTGGTGGATCATGAATTTGATGCTGTGGTTGTAGGCGCTGGAGGGGCAGGC-TTGCGAGCTGCATTTGGCCTTTCTGAGGCAGGGTTTAATACTGCATGCCTTACAAAGCTCTTTCCTACCCGATCACATACTGTTGCAGCACAGGTAAGAAAAAG---GCCCTCTTTTGATACCA------ACAGATCTTGTACAGCACCACCTCTCCTA------TAATACAAAGTCTTCTTATTAAGC---TTCAGCCACAGTTGTTGGCATC---CAGTTCATCATTCATT-----CTCACTTTCCAA----GTCACTGCTGGTA--ATCTCTACCTCGGGACCATTGTGGGATTGGCACCTCATTGTTATTT----------------TCATACATGGGTCTTTTC---CCAGC---------------------------------------------------------------TGTCCTGCC---
i mm10.chr13                   C 0 I 3094
s canFam3.chr34                 30167049 646 -  42124431 CAGTTCCTTGCTTTGAGGCTGTACCTCTTCAGCATTTCAGCTCTTGGGGGGCTTTCCAGGTGCCGGGATGAGTGTGGTC-CCTT--TGGCAGGCCTGTTGGGGTGGGCTGCCCTCACCACATACGCCGGGTGGAGGCCCCTG-----TTTGCC--GCAGCTGCTCTTT-TGTGCCTCTTTCCGTTGTGCCTGAACTCTGCCGCTGCACCCATAGTCCC-----------------------TGGCTGACAGGTGAATTGTTCCTTTCCAGATCTCTACGCAGTACCCAGTGGTGGACCATGAATTTGATGCAGTGGTGGTAGGCGCTGGAGGGGCGGGC-TTGCGAGCTGCATTTGGCCTTTCAGAGGCTGGGTTTAACACGGCCTGCGTCACAAAGCTCTTTCCCACCAGATCACACACCGTTGCCGCCCAGGTAAGAGAAAGGGTGGTTTAGTG------------GTTTGGAACCTGCACAGCAGGGCGCAGTCTC------CTGCCACAAGCCTCCTTCCCACAACAGTACAGCCACA----TTTGTCTCCTTTTGCTCCTTGCACCCTGTCAGCTCACTCACCTTGGGTGTCTGTGCGTGTACTGCCTCCAGTCCCATGCTAGAGCCGCTCTGGAGCCTC----TCACCTCTTCTCTG--CTCCAGTTACACTCAGGTCTTCTCTGAGCACC---------------------------------------------------------------CACCTTGCCCCC
i canFam3.chr34                I 246 C 0
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=15750.000000
s hg38.chr3_KI270935v1_alt         33485 7 +    197351 CACCCAC
s panTro4.chr3_GL389630_random      1989 7 +    103936 CACCCAC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199683879 7 + 202140232 CACCCAC
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180262176 7 - 181584905 CACCCAC
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173149818 7 - 174439528 cacccac
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89594499 7 -  91010382 CAGCCAC
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    144718 7 - 204313951 CACCCAC
i calJac3.chr2                 C 0 C 0
s canFam3.chr34                 30167695 7 -  42124431 TGCCCAC
i canFam3.chr34                C 0 I 1308
e mm10.chr13                    46078525 3094 - 120421639 I
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=360328.000000
s hg38.chr3_KI270935v1_alt         33492 216 +    197351 CCCTGCC------------------ACCCCAACACCTTAAGAAAAGGAGATCATCTAAAGAGGAGGATTCAGAATTTAGGTTGGGGAAGAAAAGGGCAAGGGTTTCATTTGTCCCTGGTGCTGCTGTCTTCTGGGACTCTCTGAGGGGTAAGACGGTGGTGGGCACACACAGCCAAAGGAAGTAGGGGTACAGGGGAGTGCGACTC-TGAGTATGGAGTTTATTACTTGGCAGGA
s panTro4.chr3_GL389630_random      1996 215 +    103936 CTCTGCC------------------ACCCCAACACCTTAAGAAAAGGAGATCATCTAAAGAGGAGGATTCAGAATTTAGGTTGGGGAAGAAAAGGGCAAGGGTTTCATTTGTCCCT-GTGCTGCTGTCTTCTGCGACTCTCTGAGGGGTAAGACGGTGGTGGGCACACATAGCCAAAGGAAGTAGGGGTACAGGGGAGTGCGACTC-TGAGTGTGGAGTTTATTACTTGGCAGGA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199683886 233 + 202140232 CCCTGCCTCCCCACCCACCCCGGCTGCCCCAACACCTTGAGGAAAGGAGATCATCTAAAAAGGAGGAATCAGAAGTTAGGCTGGGGAAGAAAAGGGCAAGGGTTTCATTTGTCCCT-GTGCTGCTGTCTTCTGGGACTCTCTGAGGGGTAAGATGGCAATGGGCACACACAACCAAAGGAAGTAGGGGTACAAGGGAGTGTGACTC-TGAGTATGGAGTTTATTACTTGGCAGGA
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180262183 215 - 181584905 CCCCACC------------------GCCCCAACACCTTAAGAAAAGGAGATCATCTAAAGAGGAGGAATCAGAATTTAGGGTGGGGAAGGAAAGGGCAAGGATTTTATTTGTCCCC-GTGCTGCTGTCCTCTGGGACTCTCTGAGGAGTAAGACGGTGGTGGGCACACACAGCCAAAGGAAGCAGGGGTACAGGGGAGTGCGACTC-TGAGTGTGGAGCTTATTACTTGGCAGGA
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173149825 215 - 174439528 ccccacc------------------gccccaACACCTTAAGAAAAGGAGATCATCTAAAGAGGAGGAGTCAGAATTTAGGGTGGGGAAGGAAAGGGCAAGGGTTTTATTTGTCCCC-GTGCTGCTGTCTTCTGGGACTCTCTGAGGAGTAAGACGGTGGTGGGCACACACAGCCAAAGGAAGCAGGGGTACAGGGGAGTGCGACTC-TTAGTGTGGAGCTTATTACTTGGCAGGA
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89594506 215 -  91010382 CCCCACC------------------GCCCCAACACCTTAAGAAAAGGAGATCATCTAAAGAGGAAGAATCAGAATTTAGGGTAGGGAAGGAAAGGGCAAGGGTTTTATTTGTCCCT-GTACTGCTGTCTTCTGGAACTCTCTGAGGAATAAGACGGTGGTGGGCACACACAGCCAAAGGAAGCAGGGGTACAGGGGAGTGCGACTC-TGAGTGTGGAGCTTATTACTTGGCAGGA
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    144725 215 - 204313951 CCTCACC------------------TCCCCAACACCGTAAGAAAAGGAGATCATCTAAAGAGGAGTAATCAGAATTTAGGTTGGGGAAGAAAAGGGCAAGGGTTTCATTTGTCCCT-GTGCTGCCATCCTCTGGGACTCTCTGAGGGGTGAAATGGTGGTGGCCACAAACAGCCGAAGG-AGAGGGGGTGCCGGGAAGTGTGACTCTTGAGTGTGGAGTTTATTTCTGGGCAGGA
i calJac3.chr2                 C 0 C 0
e mm10.chr13                    46078525 3094 - 120421639 I
e canFam3.chr34                 30167702 1308 -  42124431 I
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=102744.000000
s hg38.chr3_KI270935v1_alt         33708 53 +    197351 AGCACTTCTAATCTTTAACACATGCCCGTAAATGCCGTTGGGAAGATT-TGTTA
s panTro4.chr3_GL389630_random      2211 53 +    103936 AGCACTTCTAATCTTTAACACATGCCCGTAAATGCCGTTGGGAAGATT-TGTTA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199684119 53 + 202140232 AGCACTTGTAATCTTTAACACATGCCCGTAAATGCCGTTGGGAAGATT-TGTTA
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180262398 53 - 181584905 AGCACTTCTGGTCTTTAAATCATGTCCGTAAATGCCATTGGGAAGATT-TGTTA
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173150040 53 - 174439528 AGCACTTCTGGTCTTTAAATCACGCCCGTAAATGCCATTGGGAAGATT-TGTTG
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89594721 53 -  91010382 AGCACTTCTGGTCTTTAACTCACGCCCGTAAATGCCATTGGGAAGATT-TGTTA
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    144940 53 - 204313951 AGCACTTCTAGTCTTTAACACATGCCTGTAAATGCCTTTAGGGAGGTT-TGTta
i calJac3.chr2                 C 0 C 0
s canFam3.chr34                 30169010 53 -  42124431 AGCACTTCTTGTCTGTAACACATGCCTGTAAATACCAGTAGCAACATTCTGTC-
i canFam3.chr34                I 1308 C 0
e mm10.chr13                    46078525 3094 - 120421639 I
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=1447426.000000
s hg38.chr3_KI270935v1_alt         33761 695 +    197351 ATAAAATTAT-GCGGAGAGattcatggagtaccttttctgtgccagatacgttaggtaataagcatattacaggtagcctttcactcactgctccagtcagccctt-----cctggagttccctctgtctccaccacacagatgaggagactgaggctaagggaTGGAATCACTGGGTGAGTC-TGGGAGGGGTTGTGATCTGGAATCTGTCAGGCCTGGCTGCTCCTCTGCTGAGGTCAG--CCCTCACTGGGAGTCACCATGTGAGTAGCTGGCTTTCTCTGAATC---CCCCAGCGGGTGGATTTGGGCCTGGAAGACAAAGCTGGGGCTCCTGTTTGTGGCTTGTAAGGAGTGGT-TGGTGTTTC----CAGGTTGGAATCAATGCTGCTCTGGGGAACATGGAGGAGGACAACTGGAGGTGGCATTTCTATGACACCGTGAAGGGCTCCGACTGGCTGGGGGACCAGGATGCCATCCACTACGTGACGGAGCAGGCCCCCACTGCCATGGTCGAGGTGATGGGCGGGAGGCTCTGGGTGCTCTGGTGGTCTGTTTCCAGT--ACAAGAGTCCTGGAAAAAATGTAAGCAGTTGAGGCAGATGTGG-CAGCCGAAAGAATG-----------------------------------------GTGATTAGCAAAGCTCACAAGAGAAGTCTTTGTCCATCATGAACTATGTATTACATGTAATAAGAAAAA--CTTCTCTTTGATGAAGTGTTG
s panTro4.chr3_GL389630_random      2264 695 +    103936 ATAAAATTAT-GTGGAGAGattcatggagtaccttttctgtgccagatacgttaggtaataagcatattacaggtagcctttcactcactgctccagtcagccctt-----cctggagttccctctgtctccaccacacagatgaggagactgaggctaagggaTGGAATCACTGGGTGAGTC-TGGGAGGGGTTGTGATCTGGAATCTGTCAGGCCTGGCTGCTCCTCTGCTGAGGTCAG--CCCTCACTGGGAGTCACCGTGTGAGTAGTTGGCTTTCTCTGAATC---CCCCAGCGGGTGGATTTGGGCCTGGAAGACAAAGCTGGGGCTCCTGTTTGTGGCTTGTAAGGAGTGGT-TGGTGTTTC----CAGGGAGGAATCAATGCTGCTCTGGGGAACATGGAGGAGGACAACTGGAGGTGGCATTTCTACGACACCGTGAAGGGCTCCGACTGGTTGGGGGACCAGGATGCCATCCACTACGTGACGGAGCAGGCCCCCACTGCCATGGTCGAGGTGATGGGCGGGAGGCTCTGGGTGCTCTCGTGGTCTGTTTCTAGT--ACAAGAGTCCTGGAAAAAATGTAAGCAATTGAGGCAGATGTGG-CAGCCGAAAGAATG-----------------------------------------GTGATTAGCAAAGCTCACAAGAGAAGTCTTTGTCCGTCATGAAGTATGTATTACATGTAATAAGAAAAA--CTTCTCTTTGATGAAGTGTTA
i panTro4.chr3_GL389630_random C 0 I 1126
s ponAbe2.chr3                 199684172 695 + 202140232 ATGAAATTAT-CCGGAAAGatttgtggagtaccttttctgtgccagatatgttaggtaataagcatattacaggtagcctctcactcactgctccagtcagccctt-----cctggagctccctctgtctccaccacacagatgaggagactgaggctaagggaTGGAATCACTGGGTGAGCT-GGGAAGGGGTTGTGATCTGGAATCTGTCAGGCCTCGCTGCTCCTCTGCTGAGGTCAG--CCCTCACTGGGAGTCACTGCGTGAGTAGTTGGCTTTCTCTGAGTC---CCCCAGCGGGTGGATTTGGGCCTGGAAGACAAAGTTGGGGCTCCTGTTTGTGGCTTGTAAGGAGTGGT-TGGTGTTTC----CAGGTTGGAATCAATGCTGCTCTGGGGAACATGGAGGGGGACTACTGGAGGTGGCATTTCTACGACACCGTGAAGGGCTCCGACTGGCTGGGGGACCAGGATGCCATCCACTACATGACGGAGCAGGCCCCCACTGCCATGGTCGAGGTGATGGGTGGGAGGCTGTGGGTGCTCTCGTGGTCTGTTTCTAGT--ACAAGAGTCCTGGAAAAAATGTAAGCAATGGAGGCAGATGTGG-CAGCCGAAAGAATG-----------------------------------------GTGATGAGCAAAGCTCACAAGAGAAGTCTTTGTCTGTCATGAACTATGCATTACATGTAACAAGAAAAA--CTTCTCTTTGATGAAGTGTTG
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180262451 697 - 181584905 ATAACATTAT-CTGGAAAGatttgttgagtaccttttctgtgccagatatgttaggtaataagcatattacaggtagcctgtcactcacggctccagtcagccctt-----cctggagttccctctgtctccaccacacagatgaggagactgaggctaagggaTTGAATCACCGGGCGAGTC-AGGGGAGGGTCGTGACCCAGAATCTGTGGGGCCTCGCTGCTCCTCTGCTGAGGTCAG--CCCTCACTGGGAGTCACCGTGTGAGGAGTTGGCTTTCTCTGAATC---CCCCAGTGGGTGGATTTGGGCCTGGAAGACAAAGCTGGGGCTCCTGTTTGTGGCTTGTAAGGAGTGGT-TGGTGTTTC----CAGGGAGGAATCAACGCTGCTCTGGGGAACATGGAGGAGGACAACTGGAGGTGGCATTTCTACGACACCGTGAAGGGCTCCGACTGGCTGGGGGACCAGGATGCCATCCACTACATGACAGAGCAGGCTCCCGCCGCCGTGGTCGAGGTGATGGGCGGGAGGCTCTGGGCGCCCTCGTGGTCTGTTTCTAGTCAAAAAGAGTCCTGGAAAGCATGTAAGCAATTGAGGCAGATGTGGCCGGCCGAAAGAATG-----------------------------------------GTGATGAGCAAAGCTCACAAGAGGAGTCTTTTTCCGTCACGAACTGTGCATTACACGTAACAAG-AAGA--CTTCTCTTTGATGAAGTGTTG
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173150093 697 - 174439528 TTAACATTAT-CTGGAAAGatttgttgagtaccttttcTGTGCCAGATATGTTAGGTAACAAGCATATTACAGGTAGCCTGTCACTCACGGCTCCAGTCAGCCCTT-----CCTGGAGTTCCCTCTGTCTCCACCACACagctgaggagactgaggctaaGGGATTGAATCACCGGGCGAGTC-AGGGGAGGGTCGTGACCCGGAATCTGTCGGGCCTCACtgctcctctgctgaggtcag--cCCTCACTGGGAGTCACTGCGTGAGGAGTTGGCTTTCTCTGAATC---CCCCAGTGGGTGGATTTGGGCCTGGAAGACAAAGGTGGGGCTCCTGTTTGTGGCTTGTAAGGAGTGGT-TGGTGTTTC----CAGGGAGGAATCAATGCTGCTCTGGAGAACATGGAGGAGGACAACTGGAGGTGGCATTTCTACGACACCGTGAAGGGCTCCGACTGACTGGGGGACCAGGATGCCATCCACTACATGACAGAGCAGGCTCCCGCCGCCGTGGTCGAGGTGATGGGCGGGGGGCTCTGGGCGCCCTCGTGGTCTGTTCCTAGTCAAAAAGAGTCCTGGAAAGCATGTAAGCAATTGAGGCAGATGTGGCCGGCCGAAAGAATG-----------------------------------------GTGATGAGCAAAGCTCACAAGAGGAGTCTTTTTCCGTCACGAACTATGCATTACATGTAACAAG-AAGA--CTTCTCTTTGATGAAGTGTTG
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89594774 697 -  91010382 GTAACATTAT-CTGGAAAGatttgttgagtaccttttctgtgccagatatgttaggtaataagcatattacaggtagcctgtcactcactgctccagtcagccctt-----cctggagttccctctgtctccaccacacagctgaggagactgaggctaagggaTTGAATCACCGGGCGAGTC-GGGGGAGGGTCGTGACCCGGAATCTGTCGGGCCTCGCTGCTCCTCTGCTGAGGTCAG--CCCTCACTGGGAGTCACTGCGTGAGGAGTTGGCTTTCTCTGAATC---CCCCAGTGGGTGGATTTGGACCTGGAAGACAAAGCTGGGGCTCCTGTTTGTGGCTTGTAAGGAGTGGT-TGGTGTTTC----CAGGGAGGAATCAACGCTGCTCTGGGGAACATGGAGGAGGACAACTGGAGGTGGCATTTCTATGACACTATGAAGGGCTCCGACTGACTGGGGGACCAGGATGCCATCCACTACATGACAGAGCAGGCTCCCGCCGCCGTGGTCGAGGTGATGGGCAGGGGGCTCTGGGCGCCCTCGTGGCCTGTTTCTAGCCAAAAAGAGTACTGGAAAGAATGTAAGCAATTGAGGCAGATGTGGCCGGCCGAAAGAATG-----------------------------------------GTGATGAGCAAAGCTCACAAGAGGAGTCTTTTTCCATCACGAACTGTGCATTACACGTAACAAG-AAGA--CTTCTCTTTGATGAAGTGTTG
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    144993 692 - 204313951 ataaaattat-ctggaaagatttgttgagtaccttttctgtgccaggtgtgttaggtaataagcatatcacaggtagccttttgctcactgctccaatcagccctt-----cctagagttccctctgtctccaccacacagatgatgagactgaggctaagggagtgaatcactGGGCGAGTCAGGGGAGGGGTTGTGATCTGGAATCTGCCCGGCCTTGCTGCCCCTCTGCTGAGGGCAG--CTCTCCCTGGGAGTCACTGCATGAGGAG-TGGCTTTCTCTGAAT----CCCTGGTGGGTGGATTTGGGCCTGGAAGACAAAGTTGGGGCTCCTGTTTGTGGTTTGTAAGGAGTGGT-TGTTGTTAC----CAGGGAGGAATCAATGCTGCTCTGGGGAACATGGAGGAGGACAACTGGAGGTGGCATTTCTACGACACCGTGAAAGGCTCCGACTGGCTGGGGGACCAGGATGCCATCCACTACATGACAGAGCAGGCCCCTGCCGCCGTGGTCGAGGTGATGAGTGGGAGGCTGTGGGTGCTTTCGTGGTCTGTTTCGAGTACAAAAGAGTCCTGGAGAAAATGTAAGAGATTGAGGCAGATGTGGCCAGCCAAAAGAACA-----------------------------------------GTGATGAGTCAAGCTCACAAGAGAA-TCTTTTTCCGTCATGAGCGATGCAGTACATGTAACAGG-AAAA-----CTCTCTGATGAAGGGTTG
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46081619 667 - 120421639 ATAAAATT-T-CCAGATAGATTTGTTGAACATCTTCAGT-TGTTAGGTA-GATAAACAATGGCTAAGTTACAAGGATCTTTTC---------------TAGTCTTTACAGGCCTGGAGATCAAGTAACATTCCCATTACAAAT----------------AAGAATTAAGCCATCTGTCTACTC--GGGAAGTCTCATGACTTGGAATCTGTCCTGCCTTACAGCTCCT----------TAA--CCCTCATGAAGAGTCACCACATACGGAGTTTGCTGTCCCTGAATCAGATCTGAGGGGGAGG---TGGGCTGCAGAGACTG---------------TTAAGATATGTAAGCAGTTGTATGGTATTTC----CAGGGAGGTATCAATGCTGCTCTGGGGAACATGGAAGAGGACAACTGGAGATGGCATTTCTATGACACTGTGAAAGGCTCCGACTGGCTGGGGGATCAGGATGCCATCCATTACATGACAGAGCAAGCTCCTGCCTCTGTGGTTGAGGTAACTGACGGGAAACTCT---TGTGTATGTGCTCTGCTTGTATTACAAAAGAATCAGTGTAAAAATAAAAACGGGCTGGG--GATAAGGCT--CCTGGAGAATGCATGCCTACTGCAATTGAGCTCTAGGGTCCCATCCCTGGTAATGATGAGCCA-----ATGAGGAAAGT-TTTTCCTGT----AACTATTCAGTTCATTTAAGAAG-ATAG--TTTATTCTCCCGGAATTATCA
i mm10.chr13                   I 3094 C 0
s canFam3.chr34                 30169063 586 -  42124431 ATAAAATGatcccagacagatttgttgagtacctgttatgtgccaggt-tgggaagtgatgagcattgtg-----aacc------------ctccagttagc---------tctggagttgggcttcttgtcccttcttaggtgggaggactgaggctgaggga---------------ggtC-------------------------------------CTGTACCCCTACTGCAGTCAGGTCCCTTACAGACAGTTAGGTTGAAAGCATTTGTTTTTTTCTGAACC---CAGTTCTGGGA-----TGAGCCTAGAAGATACCACTGGGGCCTCTCCTTGTAGCTTGTAAG-----GT-TGCTGTCTCTTTGCAGGGAGGAATCAATGCTGCTCTGGGCAACATGGAGGAGGACAACTGGAGGTGGCACTTCTACGACACCGTGAAGGGCTCCGACTGGCTGGGGGACCAGGACGCCATCCACTACATGACAGAGCAGGCCCCTGCTTCTGTGGTAGAGGTAGTG----------------TCCACGCATGGTCTGTTTCTGAC--ACAAGAG----------------AGGTTTTGAGGCAGATGTGGTCAGCCCAAAGAAGG-----------------------------------------GT-ATGAGAGGGTGCAACAGGGAGA--CCCTTTCTATTGTCAACCATTCAGTTCATTTAATGAC-AAAGTTTTTCTCTTTTCTGAAGTGTTG
i canFam3.chr34                C 0 C 0
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=1161.000000
s hg38.chr3_KI270935v1_alt         34456 2 +    197351 AC
s ponAbe2.chr3                 199684867 2 + 202140232 AC
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180263148 2 - 181584905 AC
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173150790 2 - 174439528 AC
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89595471 2 -  91010382 AC
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    145685 2 - 204313951 AG
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46082286 2 - 120421639 GT
i mm10.chr13                   C 0 C 0
s canFam3.chr34                 30169649 2 -  42124431 AG
i canFam3.chr34                C 0 C 0
e nomLeu3.chr11                120785647 3854 + 123690457 I
e panTro4.chr3_GL389630_random      2959 1126 +    103936 I

a score=766417.000000
s hg38.chr3_KI270935v1_alt         34458 298 +    197351 ATTTTCATAAAATAGGTTA---------------ATTT-GGGTT---TGCAGATTTGTATTAAAGTT---GTTTAGTGTAGATTAGCTGTGAATATCTTGACTCCTTTAGGGTAATAAGGCTTTTGTTTGTTTTTATCTTTCACAGGTAGAAAATTATGGCATGCCGTTTAGCAGAACTGAAGATGGGAAGATTTATCAGCGTGCATTTGGCGGACACAGCCTCAAGTTTGGAAAGGGCAGGCAGGCCCATCGGTGCTGCTGTGTGGCTGATCGGACCGGCCACTCAATATTGCACACCTTATATGGGAGGGTAAGGCTG
s panTro4.chr3_GL389630_random      4085 298 +    103936 ATTTTCATAAAATAGGTTA---------------ATTT-GGGTT---TGCAGATTTGTATTAAAGTT---GTTTAGTGTAGATTAGCTGTGAATATCTTGACTCCTTTAGGGTAATAAGGCTTTTGTTTGTTTTTATCTTTCACAGGTAGAAAATTATGGCATGCCGTTTAGCAGAACTGAAGATGGGAAGATTTATCAGCGTGCATTTGGCAGACAGAGCCTCAAGTTTGGAAAGGGCGGGCAGGCCCATCGGTGCTGCTGTGTGGCTGATCGGACCGGCCACTCAATATTGCACACCTCATATGGGAGGGTAAGGCCG
i panTro4.chr3_GL389630_random I 1126 C 0
s ponAbe2.chr3                 199684869 298 + 202140232 ATATTCATAAAATAGGTTA---------------CTTC-AGGTT---TGCAGATTTGTATTAAAGTT---GTTTAGTGTAGATTAGCTGTGAATATCTTGAGTCCTTTAAGGTAATAAGATTTTTGTTTGTTTTTATCTTTCAGAGCTAGAAAATTGTGCCATGCCGTTTAACAGCACTGAAGATGGGAAGATTTATCAGCATGCATTTGGTGGACAGAGCCTCAGGTTTGGAAAGGGCGGGCAGGCTCATCGGTGCTGCTGTGTGGCTGACCGGACCGGCCACTCAATATTGCACACCTTATATGGGAGGGTAAGGCCA
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180263150 298 - 181584905 ATTTTCATAAAATAGGTTA---------------CTTT-GGGTT---TGCAGATTTGTGTTAAAGTT---GTTCAGTGTAGATGAGCTATGAATATCTTGACTCCTTTAAGGTAATAAGGTTTTTGTTTGTTTTTATCTTTCACAGCTGGAAAATTACGGCATGCCGTTTAGCAGAACTGAAGATGGGAAGATTTATCAGCGTGCATTTGGTGGACAGAGCCTCAAGTTTGGAAAGGGCGGGCAGGCCCATCGGTGCTGCTGTGTGGCTGATCGGACCGGCCACTCACTATTGCACACCTTATATGGAAGGGTAAGGCCG
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173150792 298 - 174439528 ATTTTCATAAAATAGGTTA---------------CTTT-GGGTT---TGCAGATTTGTGTTAAAGTT---GTTCAGTGTAGATGAGCTATGAATATCTTGACTCCTTTAAGGtaataaggtttttgtttgtttttatctttcacAGCTGGAAAATTATGGCATGCCGTTTAGCAGAACTGAAGATGGGAAGATTTATCAGCGTGCATTTGGTGGACAGAGCCTCAAGTTTGGAAAGGGCGGGCAGGCCCATCGGTGCTGCTGTGTGGCTGATCGGACCGGCCCCTCACTATTGCACACCTTATATGGAAGGGTAAGGCCG
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89595473 298 -  91010382 ATTTTCATAAAATAGGTTA---------------CTTT-GGGTT---TGCAGATTTGTGTTAAAGTT---GTTCAGTGTAGATGAGCTATGAATATCTTGACTCCTTTAAGGTAATAAGGTTTTTGTTTGTTTTTATCTTTCACAGCTGGAAAATTACGGCATGCCATTTAGCAGAACTGAAGATGGGAAGATTTATCAGCGTGCATTTGGTGGACAGAGCCTCAAGTTTGGAAAGGGCGGGCAGGCCCATCGGTGCTGCTATGTGGCTGATCAGACTGGCCCCTCACTATTGCACACCTTATATGGAAGGGTAAGGCCG
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    145687 282 - 204313951 ATTTTCATAAAATACATGA---------------CTTT-GGGTT---TGCAGGTTTGTGTGAAAGCT---GTT-----TAGGTTAGCTGTGAATATCGTGACTGCTTTAAGGTAATA-----------CGTTTTTATGTTTCACAGCTAGAAAATTATGGCATGCCGTTTAGCAGAACCCAAGATGGGAAGATTTATCAGCGTGCGTTTGGTGGACAGAGCCTCAAGTTTGGAAAGGGCGGGCAGGCCCATCGGTGCTGCTGCGTGGCTGATCGGACTGGCCACTCGCTACTGCACACCTTATATGGAAGGGTAAGGCCG
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46082288 314 - 120421639 GTTTTCATAGAATATGCTAGTATTGAAGTTTAGGTTTT-GGGTTTGGTGCAAATTTGGTACAAAAATGAGGTTTTTTGTTTGTTTGTTTTG---TTTTTTACTTGTTTAAGATAATA-TATTTTTGCTTG-TTTTGTGTTTCACAGCTAGAAAATTATGGTATGCCATTTAGCAGAACTGAAGATGGGAAGATTTATCAGCGTGCATTTGGTGGACAGAGCCTCAAGTTTGGGAAAGGCGGGCAGGCTCATCGGTGTTGCTGTGTGGCTGATCGGACAGGCCACTCACTCTTACACACGTTGTATGGAAGAGTAAGGCTG
i mm10.chr13                   C 0 I 440
s canFam3.chr34                 30169651 293 -  42124431 ATTTTTATAGGACATATTG---------------GTTTGGGGTT---CGCAGGCTTATGTTGAAATT---GTT-ACTGTAAAGTCGCCATGAAAGTCTTGATTCCTTCCAGGTGCTAGG-----TGTTTGTTTTTGTATTTCACAGCTGGAGAATTATGGCATGCCATTTAGCAGAACTGAAGATGGAAGGATCTATCAGCGTGCTTTTGGTGGACAGAGCCTCAAGTTTGGGAAAGGCGGGCAGGCCCATCGGTGCTGCTGTGTGGCTGACCGCACTGGCCACTCGCTGCTGCACACGTTGTATGGAAGGGTGAGGCCA
i canFam3.chr34                C 0 C 0
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=158690.000000
s hg38.chr3_KI270935v1_alt         34756 96 +    197351 CCCCCCGTCCACCTGA-GACAGGACACATAGTGCTGGGGCTTGTGGTGACAGCGGGGAATGGGTTAGCGTGCCCAGTGAGTCAGCCAGAGATTGCGT
s panTro4.chr3_GL389630_random      4383 96 +    103936 CCCTACGTCCACCTGA-GACAGGACACGTAGTGCTGGGGCTTGTGGTGACAGCGGGGAATGGGTTAGCGTGCCCAGTGAGTCAGCCAGAGATTGCGT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199685167 96 + 202140232 CCGCCGGTCCACCTGA-GACAGGACATGTAGTGCTGGGGCTTATGGTGACAGCAGGGAATGGGTTAGGGTGCTCAGTGAGTCCACCAGAGATTATGT
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180263448 96 - 181584905 CCCCCGGTCCAGCTGA-GACAGGACATGTAGTGCTGGGGCTTATGGTGACAGCGGGGAATGGGTTAGCGTGCCCAGTGAGTCCGCCAGAGATTATGT
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173151090 96 - 174439528 CCCCCGGTCCAGCTGA-GACAGGACATGTAGTGCTGGGGCTTATGGTGACAGCGGGGAATGGGTTAGCATGCCCGGTGAGTCCGCCAGAGATTATGT
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89595771 96 -  91010382 CCCCCGGTCCAGCTGA-GACAGGACATGTAGTGCTGGGGCTTATGGTGACAGCGGGGAATGGGTTAGCGTGCCCAGTGAGTCCGCCAGAGATTATGT
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    145969 96 - 204313951 CCTCCAGTGCATCTGA-GATAGGACCCGTAGTGCCAGGGCTTATGGTGACAACGGGGAATGGGTTAGCGTGCCCAGTGAGTCAGCCAGAGATTATGT
i calJac3.chr2                 C 0 C 0
s canFam3.chr34                 30169944 63 -  42124431 CCCTGGGTGCACAGGGTGACAGGACACA------------CTCTGGTTAGGACAGG-------------CGCGCGGTGA-TAAGTTGGA--------
i canFam3.chr34                C 0 C 0
e mm10.chr13                    46082602 440 - 120421639 I
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=320258.000000
s hg38.chr3_KI270935v1_alt         34852 197 +    197351 AAAAAGCAACAGAGAACAGCCGTGTGGGGCACATGCA-GCGACTGTGGATGTGACAGGAGCAGGCGT----GTGCCTTGAGAAGCTGCCCCTAAGGCAATGTGTGAGTTGTTGCCTCTATGTTGGGAAGTTGAATTGATAATCTTATATACCAGG-TTTTCACTTGGGATATGTGACACTCAGCATG-TAAGAACAGAGCAAGC
s panTro4.chr3_GL389630_random      4479 197 +    103936 AAAAGGCAACAGAGAACAGCCGTGTGGGGCACATGCA-GCGACTGTGGATGTGACAGGAGCAGACAT----GTGCCTTGAGAAGCTGCCCCTAAGGCAATGTGTGAGTTGCTGCCTCTATGTTGGAAAGTTGAATTGATAATCTTATATACCAGG-TTTTCACTTGGGATATGTGACACTCAGCATG-TAAGAACAGAGCAAGC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199685263 197 + 202140232 AGAAAGCAACAGAGAACAGCGATGTGCGGCACATGCA-GCGACTGTTGATGTGACAGGACTAGACAT----GTGCCTTGAGGAGCTGCCCCTAAGGCAATGTGTGACTTCTTGCATCTATTTTGGAAAGTTGAATTGGTAATCTTATATACCAGG-TTTTAACTTGGGATATGTGACACTCAGCATA-TAAGAACAGAGCAGGC
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180263544 198 - 181584905 AAAAAGCAACAGAGAACAACGGTGTAGGACACATGCA-GCGACTGTTGATGTGAAAGGACCAGGCAT----GTGCTGTGAGAAGCTGTCCCTAAGGCAATATGTTATTTCTTGTATCTATTTTGGAAAGTTGAATTGATAATCTTATATACCAGATTTTTAACTTGGGGTATGTGACACTCAACATG-TCAGAACCGAGCAAGC
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173151186 195 - 174439528 AAAAAGCAACAGAGAACAATGGTGTAGG--ACATGCA-GCGACTGTTGATGTGAAAGGACCAGGCAT----GTGCTGTGAGAAGCTGTCCCTAAGGCTATATgttatttctt-tatctattttggAAGGTTGAATTGATAATCTTATATACTAGGTTTTTAACTTGGGATATGTGATACTCAAAATA-TTAGAACAGAgcaagc
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89595867 195 -  91010382 AAAAAGCAACAGAGAACAACGGTGTAGG--ACATGCA-GCGACTGTTGATGTGAAAGGACCAGGCAT----GTGCTGTGAGAAGCTGTCCCTAAGGCAATATGTTATTTCTT-TATCTATTTTGGAAAGTTGAATTGATAATCTTATATGCTAGGTTTTTAACTTGGGATATGTGATGCTCAAAATA-TTAGAACAGAGCAAGC
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    146065 191 - 204313951 AAAAAGCAACAGAGAACAACTGTGTAAG--ACATGCGCGGGGTTATTGATGTGAGAGTACCAGGC------GTGCTGTCAGGAGCTGTCCCTAAGGCAATACGTTATTTCTTGTATCTGTTTTGGAAAGTTGAATTGATAATCTTATATACCAGG-TTCTAACTTGGAATATGTGACATTCAGCAT----AGGACAGAACAAGC
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46083042 184 - 120421639 aaaaattaacacaGATA------GTAAGATACCTGAA-ATAATTATTAATCTGAAAGTATTGAACAC----ATATTGTGA-AAGCTGTCTCTAAGTCAGTATGTTACTCCTTATGTCTGTATTGGAAAGTTGAGTTGGTAATCATTTC--------TTACTATTTTGAATTTGTGCTGCATAACATGCCAAGAACAGAGAAAGT
i mm10.chr13                   I 440 C 0
s canFam3.chr34                 30170007 184 -  42124431 -------AACAGGCCACCCTGGGG------ACAGGTC-AAAA-TGTCAATGTGTCCGCCTCTGGGGTCACAGTAACTTGGTAAGATGTGTGT-AGTCATTATGAATTTAGAAGTGCCTATTTTAGAAAATTAAATTGATAATCGT-TATACCGTG-TTTGGAC-GGTGATCTGCTGCACTGCAAGTG-TAAGAACAGAAAAAGT
i canFam3.chr34                C 0 C 0
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=2548.000000
s hg38.chr3_KI270935v1_alt         35049 1 +    197351 A
s panTro4.chr3_GL389630_random      4676 1 +    103936 A
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199685460 1 + 202140232 A
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180263742 1 - 181584905 A
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173151381 1 - 174439528 a
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89596062 1 -  91010382 A
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    146256 1 - 204313951 A
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46083226 1 - 120421639 A
i mm10.chr13                   C 0 I 216
e canFam3.chr34                 30170191 0 -  42124431 C
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=4200.000000
s hg38.chr3_KI270935v1_alt         35050 2 +    197351 gg
s panTro4.chr3_GL389630_random      4677 2 +    103936 gg
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199685461 2 + 202140232 gg
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180263743 2 - 181584905 GG
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173151382 2 - 174439528 gg
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89596063 2 -  91010382 gg
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    146257 2 - 204313951 GG
i calJac3.chr2                 C 0 C 0
e mm10.chr13                    46083227 216 - 120421639 I
e canFam3.chr34                 30170191 0 -  42124431 C
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=191461.000000
s hg38.chr3_KI270935v1_alt         35052 177 +    197351 ccaggcacagtggcccacgtctgtaatcccagcactttaggaggccaaggcaggaggatcacttgagaccagaagtttgagaccagtctggagaacatagtgagaccctgtctctacagaaagtttaaaaagtagctgagcatggtggtacatgcttgtaatcccagttactcagga
s panTro4.chr3_GL389630_random      4679 177 +    103936 ccaggcacagtggcccacgtctgtaatcccagcactttaggaggccaaggcaggaggatcnnttganaccnnaannnngaaaccnnncngganaacatagcgagaccctgtctctacaaaaagtttaaaaagtagctgagcatggtggtacatgcttgtaattccagttactcagga
i panTro4.chr3_GL389630_random C 0 I 20
s ponAbe2.chr3                 199685463 177 + 202140232 ccaggcacagtggcccacgtctgtaatcccagcagtttaggaggccaaggcaggaggatcacttgagaccagaagtttgaggccagtctggagaacatagcaagaccctgtctctacaaaaagtttaaaaagtagctgagcatggtggtacatgcttgtaatcccagttcctcagga
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180263745 144 - 181584905 CCAGGCACAG----------------------------Aggaggccaagg-aggaggatcacttgagaccagaagtttgagaccagcctggacaacatagcaagaccctgtctctacaaaaagtttaaaaattagctgggcatggtggtacatgcttgtaatcccagtt----agga
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173151384 177 - 174439528 ccaggcacagtggctcacatatgtaatcccagcactttaggaggccacggcaggaggatcacttgagaccagagatttgagaccagcgtggacaacatagcgagaccctgtctgtacaaaaagtttaaaaattagttgggcatggtggtacatgcttgtaatcccagttactcagga
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89596065 177 -  91010382 ccaggcacagtggctcacatctgtaatcccagcactttaggaggccacggcaggaggatcacttgagaccagaggtttgagaccagcctggacaatatagagagaccctgtctctacagaaagtttaaaaattagctgggcatggtggtacatgcttgtaatcccagttactcagga
i chlSab2.chr4                 C 0 C 0
e mm10.chr13                    46083227 216 - 120421639 I
e canFam3.chr34                 30170191   0 -  42124431 C
e calJac3.chr2                    146259   0 - 204313951 C
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=69559.000000
s hg38.chr3_KI270935v1_alt         35229  89 +    197351 ggctgaggcaggaggatcacttgag-------------------acagtgagccatgttcataccactgcactccagcctgagcaacaggaga-cctgtctcaaaaaaa
s ponAbe2.chr3                 199685640  84 + 202140232 ggctgagtcaggaggatcacttgag-------------------accgtgagccgtgtttata-----gcactccagcctgggcaacaggaga-cctgtctcaaaaaaa
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180263889 107 - 181584905 ggctgaggtgggaggatcacttgagaccagga--ggttgaggctacaatgagccatgttcataccactgcactccagcctgggcaacaggagaccctgtctcaaaaaaa
i macFas5.chr6                 C 0 I 311
s papAnu2.chr6                 173151561 105 - 174439528 ggctgaggcaggaggatcacttgagactaggatcACTTGaa---acagtgagccatgttcataccactgcactccagcctgggcaacaggaga-cctgtctcaaaaaaa
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89596242 105 -  91010382 ggctgaggcaggaggatcacttgagaccaggatcacttgaa---acagtgagccatgttcataccactgcactccagcctgggcaacaggaga-cctgtctcaaaaaaa
i chlSab2.chr4                 C 0 C 0
e mm10.chr13                    46083227 216 - 120421639 I
e canFam3.chr34                 30170191   0 -  42124431 C
e calJac3.chr2                    146259   0 - 204313951 C
e nomLeu3.chr11                120785647 3854 + 123690457 I
e panTro4.chr3_GL389630_random      4856  20 +    103936 I

a score=-484.000000
s hg38.chr3_KI270935v1_alt         35318 3 +    197351 gac--
s ponAbe2.chr3                 199685724 3 + 202140232 gaa--
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180264307 5 - 181584905 gaaaa
i macFas5.chr6                 I 311 C 0
e mm10.chr13                    46083227 216 - 120421639 I
e canFam3.chr34                 30170191 0 -  42124431 C
e calJac3.chr2                    146259 0 - 204313951 C
e chlSab2.chr4                  89596347 0 -  91010382 C
e papAnu2.chr6                 173151666 0 - 174439528 C
e nomLeu3.chr11                120785647 3854 + 123690457 I
e panTro4.chr3_GL389630_random      4856 20 +    103936 I

a score=6713.000000
s hg38.chr3_KI270935v1_alt         35321 11 +    197351 aaagaac---aaGT
s ponAbe2.chr3                 199685727 11 + 202140232 aaagaac---aaGT
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180264312 11 - 181584905 agaaaaa---aaGC
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173151666 11 - 174439528 gaaaaag---aagt
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89596347 11 -  91010382 gaaaaag---aaGT
i chlSab2.chr4                 C 0 C 0
s mm10.chr13                    46083443 14 - 120421639 aaagagcactaagt
i mm10.chr13                   I 216 C 0
e canFam3.chr34                 30170191  0 -  42124431 C
e calJac3.chr2                    146259  0 - 204313951 C
e nomLeu3.chr11                120785647 3854 + 123690457 I
e panTro4.chr3_GL389630_random      4856 20 +    103936 I

a score=61689.000000
s hg38.chr3_KI270935v1_alt         35332 45 +    197351 ATTTTAAGGCTCTTTTACC--ACCTCTGAGTTCCTGAATGGATTGGT
s ponAbe2.chr3                 199685738 45 + 202140232 ATTTTAAGGCTCTTTTACC--ACCTCTGAGTTCCTGAATGGATTGGT
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180264323 47 - 181584905 ATTTTAAGGCTCTTTTACCAAACCTCTGAGTTCCTGAATGGATTGgt
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173151677 45 - 174439528 attttaagGCTGTTTTACC--ACCTCTGAGTTCCTGAAtgggttggt
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89596358 45 -  91010382 ATTTTAAGGCTGTTTTACC--ACCTCTGAGTTCCTGAATGGGTTGgt
i chlSab2.chr4                 C 0 C 0
s mm10.chr13                    46083457 45 - 120421639 ATATTAATGTGCTTTTATC--ACCTCTAAGTTACTGAACTGATTGAT
i mm10.chr13                   C 0 C 0
s canFam3.chr34                 30170191 41 -  42124431 ATTTTATGACTC----AGT--ACCTCTGAGTTCCTGAACTGATTGAT
i canFam3.chr34                C 0 C 0
e calJac3.chr2                    146259  0 - 204313951 C
e nomLeu3.chr11                120785647 3854 + 123690457 I
e panTro4.chr3_GL389630_random      4856 20 +    103936 I

a score=10142.000000
s hg38.chr3_KI270935v1_alt         35377 12 +    197351 TTGGtttgtttg
s ponAbe2.chr3                 199685783 12 + 202140232 TTTGtttgtttg
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180264370 12 - 181584905 tttgtttgtttg
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173151722 12 - 174439528 tttgtttgtttg
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89596403 12 -  91010382 tttgtttgtttg
i chlSab2.chr4                 C 0 C 0
s mm10.chr13                    46083502 12 - 120421639 GTATTTATCTTG
i mm10.chr13                   C 0 I 240
e canFam3.chr34                 30170232  0 -  42124431 C
e calJac3.chr2                    146259  0 - 204313951 C
e nomLeu3.chr11                120785647 3854 + 123690457 I
e panTro4.chr3_GL389630_random      4856 20 +    103936 I

a score=252703.000000
s hg38.chr3_KI270935v1_alt         35389 304 +    197351 ttttgt----------tttgctttgtttttgagacggagtctcactc---tcacccaggctggagtgcagtggcgcgatctctgctcactgcaacctctgcctcccgggttcaagcgattctcctgcctcagcctccagagtagctgggactacaggtgcacgccgccacgccttgctgatgttttgtattttagtagagacagggtttcccatgttgcccaggctgctcccgaactcctgagctcaggcagtccacctgcctcggcctcccaaagtgctgggattacaggtgtgagccaccacacccggccATGGA
s ponAbe2.chr3                 199685795 306 + 202140232 ttttgt----------tttgctttgtttttgagacagagtctcactc-tgtcaccgaggctggagtgcagtggtgcgatctctgctcactgcaacctgtgcctcccgggttcaagcgattctcctgcctcagcctccagagtagctgggactacaggtgcacgccgccacgccttgctgattttttgtgttttagtagagacagggtttcccatgttgccctggctggtcccgaactcctgagctcaggcagtccacccgcctcggcctcccgaagtgctgggattataggcatgagccaccacacccggccATGGA
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180264382 315 - 181584905 ttttgttttgttttgctttgctttgtttttgagacggactctcactc-tgtcac-caggctggagtgcagtggtgcaatctctgctcactgcaacctccacctcccgggttcaagtgattctcctgcctcagcctcctgagtagctgggactataagtgcacgccaccatgcctggctaattttttgtattttagtagagacagagtttcccatgttgcccaggctggtcccgaactcctgagctcaggcagtctacccgcctcggcctcccaaagtgcgaggattagaggtgtgagccaccacacccagccATGGA
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173151734 312 - 174439528 ttttgttttgt-----tttgctttgtttttgagatggagtctcactcttgtcacgcaggctggagtgcagtggtgcaatctctgctcactgcaacctcagccacctaggttcaagcgattctcctgcctcagcctcctgagtagctgggactataagtgcacgccaccatgcctggctaattttttgtattttagtagagacagggtttcccatgttgcccaggctggtcccgaactcctgagctcaggcagtctacccgcctcagcctcccaaagtgcggggattagaggtgtgagccaccacacctagccatgga
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89596415 312 -  91010382 ttttgttttgt-----tttgctttgtttttgagacggagtctcactcttgtcacgcaggctggagtgcaatggcgcaatctctgctcactgcaacctcagccacctaggttcaagcgattctcctgcctcagcctcctgagtagctgggactacaggtgcacgccaccatgcctggctaattttttgtattttagtagagacagggtttcccatgttgcccaggctggtcccgaactcctgagctcaggcagtccacccgcctcagcctcccaaagtgcggggattagaggcatgagccaccacccccagccATGGA
i chlSab2.chr4                 C 0 C 0
e mm10.chr13                    46083514 240 - 120421639 I
e canFam3.chr34                 30170232   0 -  42124431 C
e calJac3.chr2                    146259   0 - 204313951 C
e nomLeu3.chr11                120785647 3854 + 123690457 I
e panTro4.chr3_GL389630_random      4856  20 +    103936 I

a score=107083.000000
s hg38.chr3_KI270935v1_alt         35693 116 +    197351 TTGTTTTCAT-ATTAACTGTTATCACTGGACAAAGACTTGAGGTGACAATAGTTACTGGGTAATCAGGGTCAACTTTGGCATGACCAAACAA--------------------------------TATCCTGAACAGTATTGATTCAGAG
s ponAbe2.chr3                 199686101 114 + 202140232 TTGTTTTAAT-ATTAAC--TTATCACTGGACAAAGACTTGAGGTGACAATAGTTCCTGGGTAATCAGGGTCCACTTTGGCATGACCAAATAA--------------------------------TATTCTGAACAGTATTGATTCAGAG
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180264697 116 - 181584905 TTGTTTTAAT-ATTAATTGTTATCACTGGACAAAGACTTGAGGTGACAATAGTTACTGGGTAATCAAGGTCAACTTTGGCATGGCCAAATAA--------------------------------TATTCTGAACAGTATTGATTCAGAG
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173152046 116 - 174439528 ttgttttaat-attaattgTTATCACTGGACAAAGACTTGAGGTGACAATAGTTATTGGGTAATCAAGGTCAACTTTGgcatggccaaataa--------------------------------tattctgaACAGTATTGATTCAGAG
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89596727 148 -  91010382 TTGTTTTAAT-ATTAATTGTTATCACTGGACAAAGACTTGAGGTGACAATAGTTACTGGGTAATCAAGGTCAACTTTGGCATGACCAAATAATATTCTGAACAGTATTGATTCAGagcattcagtattctgaacagtattgattcagag
i chlSab2.chr4                 C 0 C 0
s canFam3.chr34                 30170232  88 -  42124431 TTGTTTTAATCCTTAACTGTTTAGACTGGACTAACACTTGGGG-GACAGTACTTACTGGATACTCAGGGCCTACTTTGGCGTAGCCAAA------------------------------------------------------------
i canFam3.chr34                C 0 C 0
e mm10.chr13                    46083514 240 - 120421639 I
e calJac3.chr2                    146259   0 - 204313951 C
e nomLeu3.chr11                120785647 3854 + 123690457 I
e panTro4.chr3_GL389630_random      4856  20 +    103936 I

a score=197672.000000
s hg38.chr3_KI270935v1_alt         35809 201 +    197351 TAATCCATGTTCTGAGCTTTGTTGTTTTCTGATGCATGGGGACGGATCAGTAATGTGCAGGTTGTTAGAACACCAGTGACTTCTCTGTGGCTGAGTGCATCGACAAGTGTGTGGTGGGAGGAGACGGCGGCTCCTTCCGGAGCAGGAGCTGTCATGTGGGGAGCTGGCCCAGGCTCACGAGAGCGACTTGCGCTGGCTG-AG
s ponAbe2.chr3                 199686215 201 + 202140232 TAATCAATATTCCGAACTATGTTGTTTTCTGATGAATGGGGACGGATCATTAATTTGCAGGTTGTTAGAACACCAGTGACTTCTGTGTGGCTGAGTGCATCGACAAGTGTGTGGTGGGAGGAGACAGTGGCTCTGTCCGGAGCAGGAGCTGTCACGTGGGGAGCTGGCCCAGGCTTACGAGAGCAACTTGCGCTGGCTG-AG
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180264813 201 - 181584905 TATTCAGTATTCTGAACTTTGTTGTTTTCTGATGAATAGGGACAGACCATTAATTTGCAAGTTGTTAGAACACCAGTGCCTTCTCTGTGGCTGAGTGCATGGACGAGTGTGTGGTGGGAGGAGAAAGCAGCTCCGTCCGGAGCAGGAGCTGTCATGTGGGGAGCTGGCCCAGGCTTACGAGGGCAACTTGCACTGGCTG-AG
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173152162 201 - 174439528 TATTCAGTATTCTGAACTTTGTTGTTTTCTGATGAATGGGGACAGACCATTAATTTGCAAGTTGTTAGAACACCAGTGCCTTCTCTGTGGCTGAGTGCATGGACGAGTGTGTGGTGGGAGGAGAAAGCAGCTCCGTCTGGAGCAGGAGCTGTCCTGTGGGGAGCTGGCCCAGGCTAACGAGGGCAACTCGCACCGGCTG-AG
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89596875 201 -  91010382 tattcagtattcTGAACTTTGTTGTTTTCTGATGAATGGGGACAGACCATTAATTTGCAAGTTGTTAGAACACCAGTGCCTTCTCTGTGGCTGAGTGCATGGACGAGTGTGTGGTGGGAGGAGAAAGCAGCTCCGTCTGGAGCAGGAGCTGTCATGTGGGGAACTGGCCCAGGCTTACGAGGGCAACTCGCACTGGCTG-AG
i chlSab2.chr4                 C 0 C 0
s mm10.chr13                    46083754 181 - 120421639 TAATCAATAATCTGAGCT---CTGTCTTCAGAAG-GTAGTGACAGCTGGTTAACATGAAAA-TATTAGAGCACCAGTAGGTTCCTTTAGGCTGAGTACACTGAAAAAAATATGACAGTCTG-------TGCTTATTCT---------GTGGTTGTGTTGAGAGTTTGCCTATGCTCTTTAGAGTTCCTTGTATTAACCATCA
i mm10.chr13                   I 240 C 0
s canFam3.chr34                 30170320 172 -  42124431 TAATCAGTATTCTGAACTC--TTGATTTCC---------------ATTATTGATTAGCGAA-TGTTAGGACAGGAGTCGCTTCTCT--GGCTGCGTGCATCGACAGATATGTGACAGGAT-------CTGCCCACCCTGTGGAATTGTGTGTCACATGGGGAGCTGGC--AGTTTCATGAGGGTCCTTTGTGTTCACTG-AG
i canFam3.chr34                C 0 I 151
e calJac3.chr2                    146259   0 - 204313951 C
e nomLeu3.chr11                120785647 3854 + 123690457 I
e panTro4.chr3_GL389630_random      4856  20 +    103936 I

a score=103779.000000
s hg38.chr3_KI270935v1_alt         36010 113 +    197351 GGAACGGCAGGTCCA-GGCGGGcagcgctgtccggcgcctacctttctgcg-gtgccggaatctgctcgtctgcaaccgtccgctttggtagctg--ccagccacatggggctgttg
s ponAbe2.chr3                 199686416 113 + 202140232 GGAACAGCAGGTCCA-GGCGGGcagcactgtccgatgcctacctttctgcg-ctgccggaatctgctcatctgcaaccgtctgctttggtagctg--ccagccacgtggggctgttg
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180265014 113 - 181584905 GGAACAGCAGGTCCA-GGCGGGcagcgctgtccagtgcctacctttctgca-gtgctggaatctgcttgtctgcaaccgtccgcgttgggagctg--ccagccacatgtggctgttg
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173152363 113 - 174439528 GGAACAGCAGGTCCA-GGTGGGCAGCGCTGTCCAGTGCCTACCTTTCTGCA-GTGCTGGAATCCGCTTGTCTGCAACCGTCCGCGTTGGGAGCtg--ccagccacatgtggctgttg
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89597076 113 -  91010382 GGAACAGCAGGTCCA-GGCGGGcagcgctgtccagtgcctacctttctgca-gtgctggaatctgcttgtctgcaaccgtccgcgttgggagctg--ccagccacatgtggctgttg
i chlSab2.chr4                 C 0 C 0
s mm10.chr13                    46083935 116 - 120421639 GGACTATCAAATCCACCCCTGGTAGCATTGTCCAGTGCTGACTCTACTATGTGTATGGAAATAGGCTTATCAGC-ACTGCCTACTACAGCCCCAAGTCTGGCCATACTGGGGTGTTG
i mm10.chr13                   C 0 I 39
e canFam3.chr34                 30170492 151 -  42124431 I
e calJac3.chr2                    146259   0 - 204313951 C
e nomLeu3.chr11                120785647 3854 + 123690457 I
e panTro4.chr3_GL389630_random      4856  20 +    103936 I

a score=265545.000000
s hg38.chr3_KI270935v1_alt         36123 319 +    197351 ctaatgtggcaggtgtagctgaagagctgaacgttttgacttattttaattaattaagtggttatgtgttgccagtagctcccatctgggCTGTGACCCCATGGTCTGCGGATCTCACTCTGGCACCAGACTCCGAGTGGAGCTGCATGCGGCCACCGGACAGTGTGGAGTGCCTCTTCGGGTTGTGTAGAAGTAGGAAATGTGTCACCAACATAGGAGCTGTTGCTGCTGCGTTCTCTAGCACACCTGCCTTGTTGGTACTGCTGGGCGTGGAATGCCTCTCGGGCTCTGACAGTGTCATTGACACTGTTGCTGATCT
s ponAbe2.chr3                 199686529 319 + 202140232 ctagtgtggctggtgtcgctgaagagctaaacgttttgatttattttaattaattaagtggttatgtgttgccagcagctcccatCTGGGCTGTGACCCCATGGTCTGTGGACCTCACTCTGGCACCAGATTCTGAGTGCAGCTACATGTGGCCACCGGACAGTGTGGAGTGCCTCTTCGGGTTGTGTAGAAATAGGAAATGTGTCACCAAAATAGGAGCTGTTGCTGCTGCGTTCTGTAGCACACCTGCCTTGTTTGTACTGCTCGGCGTGGAATGCCTCTCAGGCTCCGACAGTGTCATTGACACTGTTGCTGATCT
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180265127 318 - 181584905 ctaatgtggcaggtgtagctgaagagctgaaca-tttgatttattttaattaatttaGTGGTTGTGTGTTGCCAGCAGCTCCCACCTGGGCTGTGACCCCATGGTCTGTGGACCTCACTCTGGCACCAAACTCTGAGCGGAGCTGCCTGTGGCCCCCAGACAGTGTGGAGTGCCTCTTCGGGTTGTGTAGAAATAGGAAACGTGTCACCAAAGTAGGAGCTGTGGCTGCTGCGTTCTCTAGCGCACCTGCCTTGTCTGTGCTGCGCGGTGTGGAACGCCTCTCGGGCGCTGACAGCGTCCTTGACTCTGTTGCTGATCT
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173152476 318 - 174439528 cTAATGTGGCAGGTGTAGCTGAAGAGCTGAAcg-tttgatttattttaattaatgtagtGGTTGTGTGTTGCCAGCAGCTCCCACCTGGGCTGTGACCCCATGGTCTGTGAACCTCACTCTGGCACCAAACTCTAAGTGGAGCTGCCTGTGGCCACCGGACAGTGTGGAGTGCCTCTTCGGGTTGTGTAGAAATAGGAAATAAGTCACCAAAGTAGGAGCTGTTGCTGCTGCGTTCTCTAGCGCACCTGCCTTGTCTGTGCTGCTCGGTGTGGAACACCTCTCGGGCGCTGACAGCGTCCTTGACTCTGTTGCTGATCT
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89597189 318 -  91010382 ctaatgtggcaggtgtagctgaagagctgaacg-tttgatttattttaattaatttaGTGGTTGTGTGTTGCCAGCAGCTCCCCCCTGGGCTGTGACCCCATGGTCTGTGGACCTCACTCTGGCACCAAACTCTGAGCGGAGCTGCCTGTGGCCACCGGACAGTGTGGAGTGCCTCTTCGGGTTGTGTAGAAATAGGAAACATGTCACCAAAGTAGGAGCTGTTGCTGCTGCGTTCTCTAGCGCACCTGCCTTGTCTGTGCTGCTCGGTGTGGAACGCCTCTCGGGCGCTGACAGCGTCCTTGACTCTGTTGCTGATCT
i chlSab2.chr4                 C 0 C 0
e mm10.chr13                    46084051  39 - 120421639 I
e canFam3.chr34                 30170492 151 -  42124431 I
e calJac3.chr2                    146259   0 - 204313951 C
e nomLeu3.chr11                120785647 3854 + 123690457 I
e panTro4.chr3_GL389630_random      4856  20 +    103936 I

a score=33263.000000
s hg38.chr3_KI270935v1_alt         36442 32 +    197351 CCTTGGATTTACCTGGTCCATTTG----------GATCAAGT
s ponAbe2.chr3                 199686848 32 + 202140232 CCTTGGATTCACCTGGTTCATTTG----------GATCAAGT
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180265445 32 - 181584905 CCTTGGATTTACCTGGTCCATTTG----------GATCAGGT
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173152794 32 - 174439528 CCTTGGATTTACCTGGTCCATTTG----------GATCAGGT
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89597507 32 -  91010382 CCTTGGATTTACCTGGTCCATTTG----------GATCAGGT
i chlSab2.chr4                 C 0 C 0
s canFam3.chr34                 30170643 41 -  42124431 CCTAGGGTTTACACAGTCCATTTGTTACACACCAGATCAGG-
i canFam3.chr34                I 151 C 0
e mm10.chr13                    46084051 39 - 120421639 I
e calJac3.chr2                    146259  0 - 204313951 C
e nomLeu3.chr11                120785647 3854 + 123690457 I
e panTro4.chr3_GL389630_random      4856 20 +    103936 I

a score=88619.000000
s hg38.chr3_KI270935v1_alt         36474 78 +    197351 TCTTTCACCTATTCACATGAGCA----------GATATCACCTTAAAACCTTAAAGGTTGGCTTAACACTT-CTTGCCCTTTTTTTTTC
s ponAbe2.chr3                 199686880 78 + 202140232 TCTTTCACCTGTTCACATGAGCA----------GATGGCACCTTAAAACCTTAAAGGATGGCGTAACACTT-CTTGCCCTTTTTTTTTC
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180265477 78 - 181584905 TCTTTCACCTATTCACACGAGCA----------AATACCACCTTAAAACCTTAAAGTTTGGCTTAACACTT-CCTGCCCTTTTTTTTCC
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173152826 78 - 174439528 TCTTTCACCTATTCACACGAGCA----------AATACCACCTTAAAACCTTACAGGTTGGCTTAACACTT-cctgcccttttttttcc
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89597539 78 -  91010382 TCTTTCACCTATTCACATGAGCA----------AATACCACCTTAAAACCTTACAGGTTGGCTTAACACTT-CCTGCCCTTTGTTTTCC
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    146259 74 - 204313951 TCTTTTGCCTATTCACATGAACA-----------ATATCACCTT-AAACCTGGAAAGCTGGCTTAACACTTACTTGCCCTTTTTT---C
i calJac3.chr2                 C 0 C 0
s canFam3.chr34                 30170684 80 -  42124431 ------GCCTGTTCACATGAGCAGTATTGCTGAAATGTCAGTTTAACACCCTAAATGC--AATTGAAACTG-TGGGATCCTTGTTTTTC
i canFam3.chr34                C 0 C 0
e mm10.chr13                    46084051 39 - 120421639 I
e nomLeu3.chr11                120785647 3854 + 123690457 I
e panTro4.chr3_GL389630_random      4856 20 +    103936 I

a score=480505.000000
s hg38.chr3_KI270935v1_alt         36552 252 +    197351 ------TTTCTTTTAGTCTCTGCGATATGATACCAGCTGTTTTGTGGAGTATTTTGCCTTGGATCTCCTGATGGAGAATGGGGAGTGCCGTGGTGTCTTCGCACTGTGCATACAGGACGGGTCCATCCATCGCATAAGAGCAAAGAATACTATTGTTGCCACAGGGTAGGAATCTAATTTCTACTTTATTTC-CTTTGTAAAAATGAATAAATTTCA--------TTTAGAGTCTCTTTATTTTAAGGAAAATAG---AGGCATTGTAGA
s ponAbe2.chr3                 199686958 252 + 202140232 ------TTTCTTTTAGTCTCTGTGATGTGATACCAGCTGTTTTGTGGAGTATTTTGTCTTGGATCTTCTGATGGAGAACGGGGAGTGCCGTGGTGTCATTGCACTGTGCATAGAGGACGGGTCCATCCATCGCATGAGAGCAAAGAACACTGTTGTTGCCACAGGGTAGGAATCTAATTTCTACTTTATTTC-CTTTGTAAAAATGAATAAATTTCA--------TTTAGAGTTTGTTTATTTTAAGGAAAATAG---AGGCATTGTAGA
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180265555 252 - 181584905 ------TTTCTGTTAGTCCCTGCGATACGATACCAGCTATTTTGTGGAGTATTTTGCCTTGGATCTCCTGATGGAGGACGGGGAGTGCCGTGGTGTCATCGCACTGTGCATAGAGGACGGGTCCATCCATCGCATACGAGCAAAGAACACTGTTGTTGCCACAGGGTAGGACTCTAATTTCTACTTTATTTC-ATTTATAAAAATGAATAACTTTCA--------TTTAGAGTTTCTTTATTTTAATGAAAATAG---AGGCATTGTAGA
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173152904 252 - 174439528 ------tttcttttagtcTCTGCGATACGATACCAGCTATTTTGTGGAGTATTTTGCCTTGGATCTCCTGATGGAGGACGGGGAGTGCCGTGGTGTCATCGCACTGTGCATAGAGGACGGGTCCATCCATCGCATAAGAGCAAAGAACACTGTTGTTGCCACAGGGTAGGACtctaatttctactttatttc-atttataaaaatgaataactttCA--------TTTagagtttctttattttaatgaaaatag---agGCATTGTAGA
i papAnu2.chr6                 C 0 I 1388
s chlSab2.chr4                  89597617 252 -  91010382 ------TTTCTTTTAGTCTCTGCGATATGACACCAGCTATTTTGTGGAGTATTTTGCCTTGGATCTCCTGATGGAGGATGGGGAGTGCCGTGGTGTCATCGCACTGTGCATAGAGGACGGGTCCGTCCATCGCATAAGAGCAAAGAACACTGTTGTCGCCACAGGGTAGGACTCTAATTTCTACTTTATTTC-ATTTATACAAATGAATAACTGTCA--------TTTAGAGTTTCTTTATTTTAATGAAAATGG---AGGCATTGTAGA
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    146333 251 - 204313951 ------TTTCTTTTAGTCTCTGCGATATGATACCAGCTATTTTGTGGAGTATTTTGCCTTGGATCTCCTGATGGAGAATGGGGAGTGCCGTGGTGTGATTGCACTGTGCATAGAAGATGGGTCCATACATCGCATAAGAGCAAAGAACACTGTTGTTGCTACAGGGTAGGAAT-TAACTTTTATTTTAGTTT-GTTTATAAAAATGAATCAATTTCA--------TTTAGAGTTTCTTTATTTTAATAAAAATAG---AGGCATTGTAGA
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46084090 249 - 120421639 ------TTTCTTACAGTCTCTGCGATATGACACCAGTTATTTTGTGGAATATTTTGCACTGGATCTTCTGATGGAAAATGGGGAGTGCCGTGGTGTCATTGCACTGTGCATAGAAGATGGGTCCATACACCGAATAAGAGCAAAAAACACTGTTATTGCTACTGGGTAGGCTTTTA--TTGTATTTAATTTC-TTATATAAAAAT---TGAGTGTCAGTATGGGGGTGGGAGTGTTTGCTTTTTTGTTAAAGTGGTTCAGG---------
i mm10.chr13                   I 39 C 0
s canFam3.chr34                 30170764 246 -  42124431 TTTCATGTTTTTTTAGTCTCTGCGATATGATACCAGCTATTTTGTAGAGTACTTTGCCTTGGATCTCTTGATGGAAAATGGAGAATGTCGTGGTGTTATTGCACTGTGCATAGAAGATGGGTCCATCCATCGCATAAGAGCCAAGAACACTGTTGTGGCTACCGGGTAGGAGTCTAACTTGTATTTAATTTCTGTGTAGGGAAGT---TGGGTCTCA------------------GTTTCCTTTTATAAAAATGG---AAACACTACGGA
i canFam3.chr34                C 0 C 0
e nomLeu3.chr11                120785647 3854 + 123690457 I
e panTro4.chr3_GL389630_random      4856  20 +    103936 I

a score=260652.000000
s hg38.chr3_KI270935v1_alt         36804 349 +    197351 ATAGCAGTTCAGACACAGGCCTTGATATAACCACGTGAGGGTGATGGCCTTTCCCAGCCATGGTTCCTCACCTGTAAAGGG---------TGAGGACAGCAGCACCTGCCTCGG-------------------------------------GGTGAG-----------------------------------------AAAGCATGGCCCTCATTAGTCGGTAGTGGCTGC--CGTCAGGTTC---------ACAGCGTACCTCtccc---------------------------------------gattttagat-----------gaggaaactgt-ggcccgaagagTCACATGGGGTTTTCTGGCAAAATCCCTCTTGT-TTTAGTGGGTTCTATGTTTATACTGA-TTCCTGGGATAGATAAGTCTGTCTTCTCCACATAATGAAAATAAAAAACTTTAATTTTATACAGTGGCA----GTTACTTTAGCCACTTTAA
s ponAbe2.chr3                 199687210 349 + 202140232 ATAACGGTTCAGACACAGGCCTTGATAtaaccgtgtgagggtgatggcctttcccagccgtggttcctcacctgtaaaggg---------tgaggacagcagcacctgccTGGG-------------------------------------GGTGAG-----------------------------------------AACGCATGGCCCTCAGTAGTCGGTAGTGGCTGC--catcaggttc---------acagcttacctctccc---------------------------------------gattttagat-----------gaggaaactgc-ggcccgaagaGTCACATGGGGTTTTCTGGCAAAATCTCTCTTGT-TTTAGTGGGTTCTGTGTTTATACTGA-TTCCTGGGATAGATAAGTCTGTCTTCTCCACATAATGAAAATAAATAACTTTAATTTTATACACTGTCA----GTTACTTTAACCACTTTAA
i ponAbe2.chr3                 C 0 I 12
s macFas5.chr6                 180265807 350 - 181584905 ATAACGGTTCAGACACAGGCCTTGATATAACCTTGTGAGGGTGATGGCCTCTCCCAGCCGTGGTTCCTCACCTGTGAAGGG---------TAAGGACGGGAGCACCTGCCTCAGG-----------------------------------CGGCGAG-----------------------------------------AAAGCATGGCCCTCAGTAGACGGCGGTGGCTGC--CGTCAGGTTC---------ACAGCTTACCTCtccc---------------------------------------gattttagat-----------gaggaaactgc-ggcccgaagagTCCCAT-GGGGTTTCTGGCAAAATCCCTCTTGT-TTTAGTGGGTACTGTGTTAATACTGA-TTCCTGGGATGGGTAAGTCCTTCTTCTCCACATAACGAAAATAAGTAACTTTAATTTTATACACTGTCA----GTTACTTTAACCATTTtca
i macFas5.chr6                 C 0 C 0
s chlSab2.chr4                  89597869 351 -  91010382 ATAACGGTTCAGACACAGGCCTTGATATAACCTTGTGAGGGTGATGGCCTCTCCCAGCCGTGGTTGCTCCCCTGTGAAGGG---------TAAGGACGGGAGCACCTGCCTCAGG-----------------------------------CGGTGAG-----------------------------------------AAAGCATGGTCCTCAGTAGACGGGGGTGGCTGC--CATCAGGTTC---------ACagcttacctctccc---------------------------------------aattttagat-----------gcggaaactgc-ggcccgaagagTCCCATGGGGGTTTCTGGCAAAATCCCTCTTGT-TTTAGTGGGTACTGTGTTAATACTGA-TTCCTGGGATGGGTAAGTCCTTCTTCTCCACATAACGAAAATAAGTAACTTTAATTTTATACACTGTCA----GTTACTTTAACCATTTtca
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    146584 336 - 204313951 ATAACGGTTCAGACACAGGCCTTGACAtaaccttgtgaggatgatggcctttcccagctgtggttcctcatctgtaaacca---------tgaggacagcagcacccaccttgtg------------gga--------------------ggttgag-----------------------------------------aAAGCagggccctcaggagatgga------------------------------acagctaacccctcct---------------------------------------gactttatat-----------gaggaaactgt-ggcctaaagagTCACATGGGGTTTTCTGGCAAAAT--CTCTTGT-TTTAGTGGGTACTGTGTTTATACTGG-TACCTAGGTTGGATAACTCTTGCTTCTCCACATAATG-AAATAAGTAACTTTAATTTTATCCACTGTCAATCTGTTATTTTAACCATTTTAA
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46084339 276 - 120421639 GCAATGGGTCAGACGTAGGCCTTCATGTCATCTCATGCAGAAGATAACCTTTCCCAGCCTTGGTACCTTTGTCACAATATAGATGTTCTCTGAGCATAATGGGGCAAAATTTGG-------------------------------------GATTAT-----------------------------------------AA------------------------------------------------------AGCTTACTTTACCT---------------------------------------GTTTTAATAT---------------AAATAGTAAGCTTAGAGAGTCACATGGTATTTTCAGATAAACT--TTCCTGC-TTTCTTGTTTACTAAGT--ATACTGA-TTCTTAGAAT--------------------CATA--------AAGTACATTTCAGTTAATAAGATTTCA--------TTTTTACCATTTTTA
i mm10.chr13                   C 0 C 0
s canFam3.chr34                 30171010 480 -  42124431 ATAGTGGTTCAGTCCCAGGTGGTGACCTAACCCAG-GAGTATAAtaaattttgtcagcctcagttctctatctgaaaagga----------gacaatcatagcacctgccttaCTTTGCACCTGGGAGGACCCTTGAAGAAACTGGGGTTGGATgggatccctgggtggcgcagcggtttggcgcctgcctttggcccagggcgtgatcctggagacccgggatcgaatcccacatcgggctccgggtgcatggagcctgcttctccctctgcctctctctctctctcactatcataaataaataaaaatttaaaaaaaaaaaAAAAGAAAGAAACTG--GGGTTGGAGAGTCACATGACATTTTCTGGACTAACCTCTCTTTTGCTTAGTGGGTACTGTGTTTATACCAATTTTCTGGAGTAG----------TTTGTTCACATGATGAAAATAAGTAAATTCCATTTGATACACTGTTAGTCTTTTATTTTAAGCCTTTAA-
i canFam3.chr34                C 0 C 0
e papAnu2.chr6                 173153156 1388 - 174439528 I
e nomLeu3.chr11                120785647 3854 + 123690457 I
e panTro4.chr3_GL389630_random      4856  20 +    103936 I

a score=4230.000000
s hg38.chr3_KI270935v1_alt         37153 3 +    197351 aag
s macFas5.chr6                 180266157 3 - 181584905 aag
i macFas5.chr6                 C 0 C 0
s chlSab2.chr4                  89598220 3 -  91010382 aag
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    146920 3 - 204313951 AAG
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46084615 3 - 120421639 AAG
i mm10.chr13                   C 0 C 0
s canFam3.chr34                 30171490 3 -  42124431 AAG
i canFam3.chr34                C 0 I 4
e papAnu2.chr6                 173153156 1388 - 174439528 I
e ponAbe2.chr3                 199687559 12 + 202140232 I
e nomLeu3.chr11                120785647 3854 + 123690457 I
e panTro4.chr3_GL389630_random      4856 20 +    103936 I

a score=7608.000000
s hg38.chr3_KI270935v1_alt         37156 24 +    197351 ttaagaagtgtcagtacagccaag
s macFas5.chr6                 180266160 23 - 181584905 -taaaaactgtcagtacagcgaag
i macFas5.chr6                 C 0 C 0
s chlSab2.chr4                  89598223 23 -  91010382 -taaaagctgtcagtatagtgaag
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    146923 20 - 204313951 TTAAAAACTATCTGTACAAC----
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46084618 24 - 120421639 TTATAAgctgaaggtatatctcag
i mm10.chr13                   C 0 I 88
e canFam3.chr34                 30171493  4 -  42124431 I
e papAnu2.chr6                 173153156 1388 - 174439528 I
e ponAbe2.chr3                 199687559 12 + 202140232 I
e nomLeu3.chr11                120785647 3854 + 123690457 I
e panTro4.chr3_GL389630_random      4856 20 +    103936 I

a score=28960.000000
s hg38.chr3_KI270935v1_alt         37180 80 +    197351 aaaaaaaatcagcaaaactacagggtgggaaaaaatattttccaaaccatatatctaatgatatcttagtatctaaaata
s macFas5.chr6                 180266183 79 - 181584905 -gaaaaaatcagcaaaactacaggttgggaaaaaatattttccaaaccttatatctaataatattttagtatctaaaata
i macFas5.chr6                 C 0 C 0
s chlSab2.chr4                  89598246 79 -  91010382 -gaaaaaatcagcaaaactacaggttaggaaaaaatattttccaaaccatatatctaatattatctttctacctaaaata
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    146943 65 - 204313951 ---------------AActataggttgggggaaaatattttcaaaaccatttgtctgataatacctcaatatctaaaata
i calJac3.chr2                 C 0 I 78
e mm10.chr13                    46084642 88 - 120421639 I
e canFam3.chr34                 30171493  4 -  42124431 I
e papAnu2.chr6                 173153156 1388 - 174439528 I
e ponAbe2.chr3                 199687559 12 + 202140232 I
e nomLeu3.chr11                120785647 3854 + 123690457 I
e panTro4.chr3_GL389630_random      4856 20 +    103936 I

a score=300.000000
s hg38.chr3_KI270935v1_alt         37260 1 +    197351 g
s macFas5.chr6                 180266262 1 - 181584905 g
i macFas5.chr6                 C 0 C 0
s chlSab2.chr4                  89598325 1 -  91010382 g
i chlSab2.chr4                 C 0 C 0
e mm10.chr13                    46084642 88 - 120421639 I
e canFam3.chr34                 30171493 4 -  42124431 I
e calJac3.chr2                    147008 78 - 204313951 I
e papAnu2.chr6                 173153156 1388 - 174439528 I
e ponAbe2.chr3                 199687559 12 + 202140232 I
e nomLeu3.chr11                120785647 3854 + 123690457 I
e panTro4.chr3_GL389630_random      4856 20 +    103936 I

a score=77111.000000
s hg38.chr3_KI270935v1_alt         37261 280 +    197351 caaaaaaaaataaaaaataaaaaaaagccctact-aaaaccaacctactaaaccctactaaaaaacaaccctactaaaaatgggcaaaggacttgaatagatatttttccag---agaagacatacaaatggccagttgatgtatgaaaaaatgctcaacatcaccaagcaccagagaaatgcaaattaaaaccccaatgag-tatcatctcatctcgctccagttagaatggctgttaccaagaggacaaaagatagtgagtgttgatgaggatgtggagaaaa
s macFas5.chr6                 180266263 264 - 181584905 -a----------------aaaaaaaaaccctact-aaaaacaacctactaaaccctactaaaaaacaaccctactaaaaatgggcaaaggacttgaatagatatttttccag---agaagacaaacaaatggccaattgatgtatgaaaaaatgctcaacatcactaagcaccagagaaatgcaaattaaaaccccaatgagacatcatctcatctcactccaggtagaatggctgttaccaagaggacaaaagagagcaagtgttggtgaggatgtggagaaaa
i macFas5.chr6                 C 0 C 0
s chlSab2.chr4                  89598326 266 -  91010382 ca----------------aaaaaacaaccctactgaaaaacaacctactaaaccctactaaaaaacaaccctactaaaaatgggcaaaggacttgaatagatatttttccag---agaagacaaacaaatggccaattgatgtatgaaaaaatgctcaacatcactaagcaccagagaaatgcaaattaaaaccccaatgagacatcatctcatctcactccaggtagaatggctgttaccaagaggacaaaagagagcaagtgttggtgaggatgtggagaaaa
i chlSab2.chr4                 C 0 C 0
s mm10.chr13                    46084730 225 - 120421639 ------------------aaaaaaaaa--------aaagaaaaggaaagaaaGTTTA--AGTaaacaaacat-ttttaaataggtatagaacctgaatagatg--tttccaggttggagggaatacacatggtcagcaaatttatg--aaagtgctcagcaccattgaacatctggagaattcaagtaacatccataTTTGTGC-----------------------GGATGGTTAATGTAATGAT----ACAGATGGTAAATGTTGATGAAGATGTAGAGGAAA
i mm10.chr13                   I 88 I 2036
e canFam3.chr34                 30171493   4 -  42124431 I
e calJac3.chr2                    147008  78 - 204313951 I
e papAnu2.chr6                 173153156 1388 - 174439528 I
e ponAbe2.chr3                 199687559  12 + 202140232 I
e nomLeu3.chr11                120785647 3854 + 123690457 I
e panTro4.chr3_GL389630_random      4856  20 +    103936 I

a score=119762.000000
s hg38.chr3_KI270935v1_alt         37541 491 +    197351 gggaaccctgtgtgctgttggtgggaatgtaaattagtacaactattgtggaaaactctggaggttcctcaaaagtcacaggactaccatgtgctccagcaacctcatttctgggtgtatatccaaagggcatgaaatcagaagctcaaagagacacctggacccccatgttcattgcagcgttattcacaatacccgagatatggaaacaacctaaaaat-ttttggtgtttaatgacaatgtggtgtgtgtacacaactgaatattattcagctatgaaaacgaaggaaatcctgtcatgtgtgacaacgtggatgaacccaaagtcattatgttaagtgaaacgacccaggcacagaaagacagatactgcatgtcactcatatgtgg-atctaaaactgtcacaactcacagaaacagaataggacagtggttgccaggggctgggggaatgcagactgtggcgatgctgattaaaggtgtaacttccc
s macFas5.chr6                 180266527 492 - 181584905 ggg-accctgtgtgctgttggggggaatgtaaattagtacaactattgtggaaaactctggaggttcctcagaattcacaggactaccatgtgctccagcaaccccatttctgggtgtatatccaaagggcatgaaatcagaagctcaaagagacacctggacccccatgttcattgcagcgttgttcacagttcccgagatatggaaaaaacctaagtatgtgttggtgtttaaggaaaatgtggtgtgtatacgcaactgaatattactcagctatgaaaatgaagggaatcctgtcatttgtgacaacagggatgaacccaaagtcattatgttaagtgaaacaagccaggcacagaatgacagatactgcatgtcacttatatgtggaatctaaaaaagtcaaaactcatggaaacagagtaggacggtggttgccaggggctgggggaatgcagactgcagcgatgctgatgaaaggtgtgacttctc
i macFas5.chr6                 C 0 C 0
s chlSab2.chr4                  89598592 490 -  91010382 gggaaccctgtgtgctgttggggggaatgtaaattagtacaactattgtggaaaactctggaggttcctcagaattcacaggactaccatgtgctccagcaaccccatttctgggtgtatattcaaagggcatgaaatcagaagctcaaagagacgcctggacccccatgttcattgcagcgttgttcacagttcccaagatgtggaaaaaacctaaatatgtgttgatgtttaaggaaaat---gtgtgtatacgcagctgaatattactcagctatgaaaacgaagggaatctcgtcatttgtgacaagagggatgaacccaaagtcattacgttaagtaaaacaagccaggcacagaatgacagataccgcatgtcacttctatgtggaatctaaaaaagtcaaaactcatagaaacagagtaggacagtggttgccaggggctgggggaatgcagactgcagcgatgctgatgaaaggtatgacttctc
i chlSab2.chr4                 C 0 C 0
e mm10.chr13                    46084955 2036 - 120421639 I
e canFam3.chr34                 30171493   4 -  42124431 I
e calJac3.chr2                    147008  78 - 204313951 I
e papAnu2.chr6                 173153156 1388 - 174439528 I
e ponAbe2.chr3                 199687559  12 + 202140232 I
e nomLeu3.chr11                120785647 3854 + 123690457 I
e panTro4.chr3_GL389630_random      4856  20 +    103936 I

a score=10690.000000
s hg38.chr3_KI270935v1_alt         38032 28 +    197351 gtcacaaggtgaagttctgaaggtctga
s macFas5.chr6                 180267019 28 - 181584905 gttaccaggtgaggttcagaagttctaa
i macFas5.chr6                 C 0 C 0
s chlSab2.chr4                  89599082 28 -  91010382 gttaccaggtgaggttcagaaggtctaa
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    147086 28 - 204313951 gttATaagatgaagttctgaagagctaa
i calJac3.chr2                 I 78 C 0
e mm10.chr13                    46084955 2036 - 120421639 I
e canFam3.chr34                 30171493  4 -  42124431 I
e papAnu2.chr6                 173153156 1388 - 174439528 I
e ponAbe2.chr3                 199687559 12 + 202140232 I
e nomLeu3.chr11                120785647 3854 + 123690457 I
e panTro4.chr3_GL389630_random      4856 20 +    103936 I

a score=17749.000000
s hg38.chr3_KI270935v1_alt         38060 28 +    197351 taaacagcatggtggctagagttaatgt
s macFas5.chr6                 180267047 28 - 181584905 tatacaacatggtggctatagtgaatat
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173154544 28 - 174439528 TATACAGCACGGTCGCTAGAGTGAATAT
i papAnu2.chr6                 I 1388 C 0
s chlSab2.chr4                  89599110 28 -  91010382 tatacaacatggtggctatagtgaatat
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    147114 27 - 204313951 catacaacatgg-ggctatagttaataT
i calJac3.chr2                 C 0 C 0
e mm10.chr13                    46084955 2036 - 120421639 I
e canFam3.chr34                 30171493  4 -  42124431 I
e ponAbe2.chr3                 199687559 12 + 202140232 I
e nomLeu3.chr11                120785647 3854 + 123690457 I
e panTro4.chr3_GL389630_random      4856 20 +    103936 I

a score=68022.000000
s hg38.chr3_KI270935v1_alt         38088 75 +    197351 ----tatagagcatggtggccagagttaacat----tatacagcatggtggctacagttaaaat----catacagtacggtggctat
s rheMac3.chr6                      1054 75 + 180491593 ----TATACAGCATGGTGGCTAGAGTTAACAT----TATACAGCATGGCGGCTATAGTTAAtat----tatacgacacggtagctag
i rheMac3.chr6                 N 0 C 0
s macFas5.chr6                 180267075 75 - 181584905 ----taTACAGCACGGTGGCTACAGTTAACAT----TATACAGCACGGTGGCTATAGTGAATAT----TATACAGCATGGTGGCTAT
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173154572 75 - 174439528 ----TATACAGCACGGTGGCTAGAGTTAACAT----TATACAGCATGGGGGCTATAGTTAATAT----TATACGACACGGTAGCTAG
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89599138 75 -  91010382 ----tatacagtaCGGTGGCTACAGTTAACAT----TATACAGCATGGTGGCTATAGTGAATGT----TATACAGCACGGTGGCTAT
i chlSab2.chr4                 C 0 I 1502
s calJac3.chr2                    147141 84 - 204313951 CTAACGTACAACATGG-GGCTATAGTTAATATCTAACGTACAACATGG-GGCTATAGTTAATatctaacgtacaacatga-ggctat
i calJac3.chr2                 C 0 C 0
e mm10.chr13                    46084955 2036 - 120421639 I
e canFam3.chr34                 30171493  4 -  42124431 I
e ponAbe2.chr3                 199687559 12 + 202140232 I
e nomLeu3.chr11                120785647 3854 + 123690457 I
e panTro4.chr3_GL389630_random      4856 20 +    103936 I

a score=9715.000000
s hg38.chr3_KI270935v1_alt         38163 9 +    197351 cattaatat
s rheMac3.chr6                      1129 9 + 180491593 agttaatat
i rheMac3.chr6                 C 0 I 3
s macFas5.chr6                 180267150 9 - 181584905 AGTGAATAT
i macFas5.chr6                 C 0 I 1272
s papAnu2.chr6                 173154647 9 - 174439528 AGTTAATAT
i papAnu2.chr6                 C 0 I 3
s chlSab2.chr4                  89600715 9 -  91010382 agttaatat
i chlSab2.chr4                 I 1502 I 3
s calJac3.chr2                    147225 9 - 204313951 agttaatat
i calJac3.chr2                 C 0 I 4
e mm10.chr13                    46084955 2036 - 120421639 I
e canFam3.chr34                 30171493 4 -  42124431 I
e ponAbe2.chr3                 199687559 12 + 202140232 I
e nomLeu3.chr11                120785647 3854 + 123690457 I
e panTro4.chr3_GL389630_random      4856 20 +    103936 I

a score=46449.000000
s hg38.chr3_KI270935v1_alt         38172 69 +    197351 aacttgaaatttgcgaagagagtagaccttaggtgtctgtatctccaaaaaaaaggataattgtatgag
s rheMac3.chr6                      1141 68 + 180491593 aacttgaaatttgcaaacagagtagaccttaagcgtctgtatctccaaaaaaat-gataagtgtatgag
i rheMac3.chr6                 I 3 C 0
s papAnu2.chr6                 173154659 68 - 174439528 AACTTGAAATTTGCGAACAGAGTAGACCTTAAGCGTCTGTATCTCCaaaaaaaC-GATAATTgtatgag
i papAnu2.chr6                 I 3 C 0
s chlSab2.chr4                  89600727 68 -  91010382 aacttgaaatttgcgaacagagtagaccttaagcgtctatatctccaaaaaaac-gataattgtatgag
i chlSab2.chr4                 I 3 C 0
s calJac3.chr2                    147238 68 - 204313951 aactttagatttgctaa-ggtgtagactgtaggtgtccatatctccagaaaaaaggataattagatgag
i calJac3.chr2                 I 4 C 0
e mm10.chr13                    46084955 2036 - 120421639 I
e canFam3.chr34                 30171493  4 -  42124431 I
e macFas5.chr6                 180267159 1272 - 181584905 I
e ponAbe2.chr3                 199687559 12 + 202140232 I
e nomLeu3.chr11                120785647 3854 + 123690457 I
e panTro4.chr3_GL389630_random      4856 20 +    103936 I

a score=134914.000000
s hg38.chr3_KI270935v1_alt         38241 137 +    197351 gtgatagatgtgtattaagttgattgtgtcatcagttcacaaaat-----aaatcatcacgctgtacaccttaaatatatacagtat--tgttttttg-tttaattcatcaatcatacctcagtaaatctgggggaaaaaAA-CAA
s rheMac3.chr6                      1209 144 + 180491593 gtgatagatgtgtattaatttgattgtgtcatcagttcacaaaatatatcaaatcatcacattgtacaccttaaatatatacggttttgtttttttttttttaattcatcaatcatacttcagtaaattggggggaaaaaA--CAA
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180268431 138 - 181584905 gtgatagatgtgtattaatttgattgtgtcatcagttcacaaaatatatcaaatcatcacattgtacaccttaaatatatacggtt---tttttttttttttaattcatcaatcatacttcagtaaaTTGGGGGGGAAA-----AA
i macFas5.chr6                 I 1272 C 0
s papAnu2.chr6                 173154727 144 - 174439528 gtgatggatgtgtatTAACTTGATTGTGTCATCAGTTCACAaaatatatcaaatcatcacattgtacaccttaaatatgtacacttt--tgttttttattttaattcatcaaTCATACCTCAGTaaatctggggggaaaaaagcaa
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89600795 144 -  91010382 gtgatggatgtgtattaacttgattgtatcatcagttcacaaaatatatcaaatcatcacattgtacaccttaaatatatgcacttt--tgttttttattttaattcatcaatcatacctcagtaaatctgggggaaaaaAAGCAA
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    147306 125 - 204313951 gtaatagatgtg--ttaattaacttgtgtcttcagttcacaaaatatatgaaatca--------tgtaccttaaatatatacaggtt--ttt-------tttaattcatcaattatacctcagtacatctggggaaaAAAA--CAA
i calJac3.chr2                 C 0 C 0
e mm10.chr13                    46084955 2036 - 120421639 I
e canFam3.chr34                 30171493   4 -  42124431 I
e ponAbe2.chr3                 199687559  12 + 202140232 I
e nomLeu3.chr11                120785647 3854 + 123690457 I
e panTro4.chr3_GL389630_random      4856  20 +    103936 I

a score=94041.000000
s hg38.chr3_KI270935v1_alt         38378 59 +    197351 AATCCATAAAAATTTTAAAATTTTCATTATAAAAGTAGTATATGCTTACTGGGGAAACC
s rheMac3.chr6                      1353 59 + 180491593 AATCCataaaaattttaaaattttcattataaaaGTAGTATATGCTTATTGGGGAAATC
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180268569 59 - 181584905 AATCCATAAAAATTTTAAAATTTTCATTATAAAAGTAGTATATGCTTATTGGGGAAATC
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173154871 59 - 174439528 aatccataaaaattttaaaattttcattataaaagtagTATATGCTTATTGGGGAAATC
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89600939 59 -  91010382 AATCCATAAAAATTTTAAAATTTTCATTATAAAAGTAGCATATGCTTATTGGGGAAATC
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    147431 59 - 204313951 AATCCataaaaatttaaaaattttcattataaaaGTGGTATATGCTTATTGGGGAAACC
i calJac3.chr2                 C 0 C 0
s canFam3.chr34                 30171497 57 -  42124431 AATCCATAAACATT--ACAGCCTTCTGTATTAAAGTAGCACGTGCTTATCAGGGAAGTC
i canFam3.chr34                I 4 I 9
e mm10.chr13                    46084955 2036 - 120421639 I
e ponAbe2.chr3                 199687559 12 + 202140232 I
e nomLeu3.chr11                120785647 3854 + 123690457 I
e panTro4.chr3_GL389630_random      4856 20 +    103936 I

a score=121353.000000
s hg38.chr3_KI270935v1_alt         38437 96 +    197351 TTTTGAACAGCACAAATCTAAAATACAAATAGggccagacgcatagtggctcatgcctgtaatcccagcactttgggaggccgaagtgggtggatc
s rheMac3.chr6                      1412 96 + 180491593 TTTTGAACAGCACAAAGCTAAAATACAAATAGggtcaggcgtgcagtggctcatgcctgtaatcccagcactttggaaggctgaagtgggaggatc
i rheMac3.chr6                 C 0 M 6523
s macFas5.chr6                 180268628 96 - 181584905 TTTTGAACAGCACAAAGCTAAAATACAAACAGggccagacgtgcagtggctcatgcctgtaatcccagcactttggaaggccgaagtgggaggatc
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173154930 96 - 174439528 TTTTGAACAGCACAAAGCTAAAATACAAACAGGGCCaggcgtgcagtggctcatgcctgtaatcccagcactttgggaggccgaagtgggaggatc
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89600998 96 -  91010382 TTTTGAACAGCACAAAGCTAAAATACAAATAGggccaggcacgcagtggctcatgcctgtaatcccagcactttgggaggccgaagtgggaggatc
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    147490 96 - 204313951 TTTTGAACAGCACAAAGCTAAAATACAAATAGGGTCAGGTgcatggtgcctcgtgcctgtaatcccagctctttggaaggccaaagtgggaagatc
i calJac3.chr2                 C 0 C 0
e mm10.chr13                    46084955 2036 - 120421639 I
e canFam3.chr34                 30171554  9 -  42124431 I
e ponAbe2.chr3                 199687559 12 + 202140232 I
e nomLeu3.chr11                120785647 3854 + 123690457 I
e panTro4.chr3_GL389630_random      4856 20 +    103936 I

a score=173867.000000
s hg38.chr3_KI270935v1_alt         38533 234 +    197351 acctgaggtcaggagttcaagaccagcgtggccaacgtggcgaaacccagtctctactaaaaatacaaaaatcaattggatgtggtggtgcacacctgtattcccaggtacttgggaggctgaggcagaagaatcacttgaacttgggagccagaggttgccgtgagccgagattgtgccaccgtactccagcctgggcgacaagagttagaccctatctcaaaataaataaat
s macFas5.chr6                 180268724 225 - 181584905 acttgaggtcaggagttcgagaccagccgggccaacatggcgaaaccccatccctactaaaaatacaaaaattaactgggcatggtggtgcacacctgtaatcccagctacccgggaggctgaggcggaaaagtcacttgaacctgggagctggaggttgctgtgagccgagatcgtgccactgtactccagcctgggtgac-agagttagactctatctca--------gaat
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173155026 225 - 174439528 acttgaggtcaggagttcaagaccagcctggccaacatggcgaaaccccatctctactaaaaatacaaaaattaaatggacgtggtggtgcacacctgtaatcccggctacccgggaggctgaggcggaagagtcacttgaacctgagagccagaggttgccgtgagccgagatcgtgccactgtgctccagcctgggcgac-agagttagaccctgtctca--------aaat
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89601094 225 -  91010382 acctgaggtcaggagttcaagaccagcctggccaacatggcgaaacccaatctctactaaaaatacaaaaattaactgagcatggtggtgcacacctgtaatcccagctacccgagaggctgaggcggaaaagtcacttgaacctgggagccggaagttgctgtgagccgagatcgtgccactgtactccagcctgggcgac-agagttagactctatctca--------aaat
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    147586 225 - 204313951 acttgaggtcaggagtttgagaccagcctggccaacttgacaaaaccccatttctacaaaaaagacaaaaattaactgggtgtggtggtaaatacctgtaattccagctactcaggaggctgaggcgggagaatcgcttgaacctgggaggtggaggttgcagtgagccgagattgcgtcactgcactccagcctgggcgac-agagcaagaccctatctca--------aaat
i calJac3.chr2                 C 0 C 0
e rheMac3.chr6                      1508 6523 + 180491593 M
e mm10.chr13                    46084955 2036 - 120421639 I
e canFam3.chr34                 30171554   9 -  42124431 I
e ponAbe2.chr3                 199687559  12 + 202140232 I
e nomLeu3.chr11                120785647 3854 + 123690457 I
e panTro4.chr3_GL389630_random      4856  20 +    103936 I

a score=7505.000000
s hg38.chr3_KI270935v1_alt         38767 7 +    197351 aaataaa
s macFas5.chr6                 180268949 7 - 181584905 aaataaa
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173155251 7 - 174439528 aaatcaa
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89601319 7 -  91010382 aaataaa
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    147811 7 - 204313951 aaataaa
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46086991 7 - 120421639 AAATACA
i mm10.chr13                   I 2036 C 0
e rheMac3.chr6                      1508 6523 + 180491593 M
e canFam3.chr34                 30171554 9 -  42124431 I
e ponAbe2.chr3                 199687559 12 + 202140232 I
e nomLeu3.chr11                120785647 3854 + 123690457 I
e panTro4.chr3_GL389630_random      4856 20 +    103936 I

a score=431385.000000
s hg38.chr3_KI270935v1_alt         38774 439 +    197351 taaaa-----TATAAATGGAAGTCTCTTCTCTGATCCCAGGCTTCTATCCTACCTGCGCAGGGTAGCAGCACCACTGGCGTGGCCCCC--AGTGATGTGTGTGGGGTGTGCGTGAGTAGGGGGTTGTGTGCA-CACA--------GCACTGAGAAGATGGTG-CCCGGGGGCTGCCCTGTCCGTTCTGTGATCTCATTAGACAGGAGGTCCGGACGTGGGCCACTGTGTGCAGTCACTGCTCTCTGTTG----------TTTCCATAGGCTACGGGCGCACCTACTTGAGCTGCACGTCTGCCCACACCAGCACCAGCGACGGCACGGCCATGATCACCAGGGCAGGCCTTCCTTGCCAGGACCTCGAGTTTGTTCAGTTCCACCCCACAGGTAGGGCAGGACGCCTTGCCCGGAAGGCGTTCGGCTC--GTGTGTCTTGTAAGC--------------GTGTGGTGCCTACTCATTGCTCT
s macFas5.chr6                 180268956 434 - 181584905 taaaa-----tacaaaTGGAAGTCCCTTCTCTGATCCCAGGCTTCTATCCTACATGCATAGGGTAGCAGCTCCACTGGTGTGGCCCCC--AGTGATGTGTGTGGGGTGTGCGTGAGTAGGGGGTTGTGT----------------GCACTGAGAAGACGGTG-CCCGGGGGCTGCTGTGTCCATTCTGTGATCTCACCAGACAGGAGGTCCGGACGTGGGCCGCTGTGTGCAGTCACTGCTGTCTGTTG----------TTTCCAGAGGCTACGGGCGCACCTACTTCAGCTGCACGTCTGCCCACACCAGCACCGGCGACGGCACGGCCATGATCACCAGGGCAGGCCTTCCTTGCCAGGACCTAGAGTTCGTTCAGTTCCACCCCACAGGTAGGGCAGGACACCTTGCCCGGCAGGTGTTCAGCTCATGTGTGTCTTATAAGC--------------GTGTGGTGCCTACTCATTGCTCC
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173155258 447 - 174439528 taaaa------acaaatggaagtcCCTTCTCTGATCCCAGGCTTCTGTCCTACCCGCACAGGGTGGCAGCCCCACTGCTGTGGCCCCC--AgtgatgtgtgtggggtgtgcGTGAGCAGGGGGTTGTGT----------------GCACTGAGAAGACGGTG-CCCGGGGGCTGCTGTGTCCATTCTGTGATCTCACCAGACAGGAGGTCCGGACGTGGGCCGCTGTGTGCAGTCACTGCTGTCTGTTG----------TTTCCAGAGGCTACGGGCGCACCTACTTCAGCTGCACGTCTGCCCACACCAGCACGGGCGACGGCACGGCCATGATCACCAGGGCAGGCCTTCCTTGCCAGGACCTAGAGTTCGTTCAGTTCCACCCCACAGGTAGGGCAGGACGCCTTGCCTGGCAGGCGTTCAGCTCACATGTGCCGTGTAAGCTGTACTTGTAAGTTGTAAGCCAACTACTCATTGCTCC
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89601326 447 -  91010382 taaaa-----tacaaaTGGAAGTCCGTTCTCTGATCCCAGGCTTCTATCCTACCTGCATAGGGTAGCAGCTCCACTGGTATGGCCCCC--AGTGATGTGTGTGGGGTGTGTATGAGTAGAGGGTTGTGTGCA-CACAGACA----GCACTGAGAAGATGGTG-CCCGGGGGCTGCTGTGTCCATTCTGTGATCTCACCAAACAAGAGGTCCGGACGTGGGCCGCTGTGTGCAGTCACTGCTGTCTGTTG----------TTTCCAGAGGTTACGGGTGCACCTACT-----------TCTGCCCACACCAGCACCGGTGACAGCATGGCCATGATCACCAGGGCAGACCTTCCTTGCCAGGACCTAGAGTTTGTTCAGTTCCACCCCACAGGTGGGGCAGGACACCTTGCCTGGCAGGCGTTCAGCTCATGTGTGTCTTGTAAGCTCTACTTGTAAGTTGTA-GGCAACTACTCATCGCTCC
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    147818 428 - 204313951 taaaataaaaTACAGATGGAAGTCCCTTCTCTGA--CCTGGCTTCTATCGTA----CGCAGGGTAGCAGCACCACAGGCGTGGCCCCC--AGTGATGTGT---GGGGGTACCTGAGGAG-GGGTTGTGTGCA-CACAGACA----GCACTGAGAAGGTGGTGCCCCGGGTGTCTCCATGTCCATTC-GCAGTCTCATCAGACAGGAGGTCTGGATGTGGGCTGCTGTGTGCAGTCACTGCTCTC--TTG----------TTTCCAGAGGCTACGGGCGCACCTACTTCAGCTGCACGTCTGCCCACACCAGCACCGGTGATGGCACAGCCATGGTCACCAGGGCAGGCCTTCCTTGCCAGGACCTCGAGTTTGTCCAGTTCCACCCCACAGGTAGGGCACAGT----------GCAGGCATCGGGCTCATGTGTGTCTCATAAGC--------------GTGTGGTGCCTACTCATTGCTCT
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46086998 416 - 120421639 AAAAA-----TACAA---TATTCCCCTTCTCTGTCTCCTAGCCTCCATCTTA--------TGTTAAGAACATCACAAGTATGGCCTCCCACGTATTGTGTGTCGTGTATATACATGCATGGGGCAGAGAACATTACAAGCAAGGGGTCATTAGAGGTTGGTGCCCCAGAGACTGC-----------------ACCATATAAGAGGAAGTTTGG-TGTGGACTGATGCTTATAGTCACTGTTTTC---TG----------CTTTCAGGGGCTACGGGCGAACCTACTTCAGCTGTACATCTGCCCATACCAGCACAGGGGACGGCACAGCCATGGTCACTAGGGCTGGTTTGCCTTGCCAGGACTTAGAATTTGTTCAGTTCCACCCCACAGGTAGGACAGAATACCT-----GTCTGGCTCTGGGCTCTTCTGTGTATTTCAAGC--------------ATGCAGTACCTATTCCTTGCTTT
i mm10.chr13                   C 0 I 246
s canFam3.chr34                 30171563 384 -  42124431 TAAAG-----TACCAATGAAAGTGCCTTCTCTGTCCCTCAGGCTCCCACCCAGCTGCCCAGGGTA----------------------------------------GTGTATACAGACAG-----------CA-------------GCTGTCAGA-----GTG-CTTCTGGGCTGCTCTGTCCACTC--TGGTGCCATTAGAAAGGCAGACCTGA--TGGTTCACTGTGTGTCATGTTCTCTCCATGCTGGCATGTCTGTTTTCCAGAGGTTATGGGCGCACCTACTTCAGCTGCACATCTGCCCACACCAGCACCGGTGACGGCACCGCCATGGTCACCAGGGCAGGCCTTCCCTGCCAGGACTTGGAGTTCGTTCAGTTCCACCCCACAGGTAGGATGGGAT----TGCCTTCATGGGGTCAGGGATTTTCATGTCTTTTAAGc--------------cctccacagct-ctcaatgctcc
i canFam3.chr34                I 9 C 0
e rheMac3.chr6                      1508 6523 + 180491593 M
e ponAbe2.chr3                 199687559  12 + 202140232 I
e nomLeu3.chr11                120785647 3854 + 123690457 I
e panTro4.chr3_GL389630_random      4856  20 +    103936 I

a score=100691.000000
s hg38.chr3_KI270935v1_alt         39213 134 +    197351 TCCATAGTTTTATGTAATAACATGGTTTTGAAgatcagcttccatagctctcaggtcctaacttcaatgtcatttccttaaggagacttttcccacactccccttcccctaaggcagtttgggccaccatctta
s macFas5.chr6                 180269390 134 - 181584905 TCCATGGTTTTATGTAATAACATGGTGTTGAAGATCAGcttcctcagctctcaggtcctcacttcaatgtcgtttccttaaggagacttttcctacactctccttcccctaaggcagtttgggccagcgtttta
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173155705 134 - 174439528 TCCATGGTTTTATGTGGTAACGTGGTGTCGAAGATCAGCTTTCTCAGCTCTCAGGTCCTCACTTCAATGTCATTTCCTTAAGGAGATTTTTCCCACACTTTCCTTCCCCTAAGGCAGTTTGGGCCAGCATCTTA
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89601773 134 -  91010382 TCCATAGGTTTATGTGGTAACGTGGTTTTGAAGATCAGctttctcagctctcaggtcctaacttcaatgtcgtttccttaaggagacttttcccacacttcccttcccctaaggcagtttgggccagcgtttta
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    148246 104 - 204313951 GCcatagttctat------------------------gctttctcggctctcaggtcctgacttaaatgtcatttccttaaggagactttgcccacacct------ccctaaggtagtttgggccaccgtctta
i calJac3.chr2                 C 0 C 0
s canFam3.chr34                 30171947 100 -  42124431 tcggcaattccatacactgacat-----------------------gttctcagagcccacct----tgtcatttgctcaaggagatctttccctgtctc------ccccaaagcagcttagggca-catctta
i canFam3.chr34                C 0 I 21
e rheMac3.chr6                      1508 6523 + 180491593 M
e mm10.chr13                    46087414 246 - 120421639 I
e ponAbe2.chr3                 199687559  12 + 202140232 I
e nomLeu3.chr11                120785647 3854 + 123690457 I
e panTro4.chr3_GL389630_random      4856  20 +    103936 I

a score=275548.000000
s hg38.chr3_KI270935v1_alt         39347 368 +    197351 tgcatttctcaagagccctaaaccctgccttggtgatacttatgccagcagtaaagcagggattgaggccgggcatggtggctcacacctgtaatcccagcactttgggaggccaaggcaggtggatcacctgaggtcaggagttcaagaccagcctgcacaacatggtgaaacctcatctctactaaacataaaaaaatcagctgggcatggtggcatgcacctgtgatcccagctacttgggaggctgaggcgggaggaatgct----tgaacctgggaggcagaggttgcagtgagccgagatcgcaccactgcgctccagcctgggcaacagagtaagacttcgtctcaaaaaaaaaaaaaaaaaaag
s macFas5.chr6                 180269524 361 - 181584905 tgcatttctgaagagccctaaaccctgccttgatcatacttgtgccagcagtaaagcagggattgaggccaggcgcggtggctcatgcctggaatcccagcactttgggaggccaaggcaggcagatcacctgaggtcaggagttcaagaccagcccgaccaacatggtgaaacctcatgtctactgaaaatacaaaaatcagcatggcgtggtggcatgtacctataatcccagctacttgggaggctgaggtgggaggaatgtt----tcaacctgggaggcagaggttgcagtgagcccaggtcgcacccctgcactccagcctgggcaacagagtaagactccgtctc-------aaaaaaaaaaaag
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173155839 363 - 174439528 TGCATTTCTGAAGAGCCCTAAACCCTACGTTGGTGATACTTGTGCCAGCAGTAAAGCAGggattgaggccaggcgcggtggctcacacctgtaatcccagtactttgggaggccggggcggccggatcacctgaggtcagcagtttgagaccaacccaaccaacaaggtaaaacttcatctctactaaaaatacaaaaatcagcatggcgtggtggcatgtacctgtaatcccagctacttgggaggccaaggcaagaggaatact----tgaatctgggaggcagaggttgcagtgagccgagatcacacccctgcactccagcctgggcaacacagtaagactccgtctc-----aaaaaaaaaaaaaag
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89601907 361 -  91010382 tgcatttctgaagagccctaaaccctgccttggtgatacttgtgccagcagtaaagcagggattgaggccaggcgcggtggctcacgcctgtaatcccagcactttgggaggccaaggcaggcagatcacctgaggtcaggagttcaagaccagcccagccaacatggtgaaacctcatctctactgaaaatacaaaaatcagcatggcgtggtggcatgtacctgtaatcccagctacttgggaggccaaggcaagaggagtact----tgaatctgggaggcagaggttgcagtgagccgagatcgcacccctacactccagcctgggcaacagagtaagactctgtctc-------aaaaaaaaaaaag
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    148350 362 - 204313951 cgcattcctcaagaaccctaaaccctgccttggtgatacttatcccagcagtaaagcggggattgaggccgggcacagtgactcacacctgtcatctcagcactttgggaggtcgaggcaggtggatcacctgaggtcaggggttcgagaccagcctggccaacatggtgaaacctcatctctactaaaaatacaaaaattaggtgggcatggtggcaggtgcctgtaatcccagctactcaggagactgaggcaggaggaacgcttgactgaacct--gaggcagaggttgcagtgagctcagatcgtgccacggccctccagcctgggcaacagagtaagactccatctc-------aagtaaaaaaaa-
i calJac3.chr2                 C 0 C 0
e rheMac3.chr6                      1508 6523 + 180491593 M
e mm10.chr13                    46087414 246 - 120421639 I
e canFam3.chr34                 30172047  21 -  42124431 I
e ponAbe2.chr3                 199687559  12 + 202140232 I
e nomLeu3.chr11                120785647 3854 + 123690457 I
e panTro4.chr3_GL389630_random      4856  20 +    103936 I

a score=532542.000000
s hg38.chr3_KI270935v1_alt         39715 653 +    197351 taaagcaggaattgttcagtgtccct-ctttgcagtgaggttgtcagcaactc--g----ggcaggcaggtcttctcattaactggggtgctccacgcccagcacatggtagggtctccatcggggtttactgagtgaGCATTCTGAGAGCTG-GGTGAATGCCGTGGAACCAAGAAGCAGCACAGGCAGATTTCAGCTTTGTA-GGACAACACAGAGCTTCCGTGACAATGGGATGTAAAGTTAAGACACAGCCATGAGAGA----------ACCCCATGTGACGTT-GGGCGCT-GGGCTCAGCCCACGTGACCACTGAGGGAGCTT-GTCGTGGGGAAGATGAGCTCGTCTTGGGGACGTCTGACGGTTGAGGTTACGAATGTGCAATTTGGAGACATTAACTCAGAAATGACAGTTGAAGTCTTGAGTTTGGAGGAGGTTCTTCAA-AATGAGTC--AGAGACAGACACACACACGTCTGCCTCTTGTTTGAGGTGACTCGTCCTG----GACTTTTCT--GGGTTGCTTTTCTGACCTGTGGAC-GATGGAGACCCC----TGAAGTGG------------TGCCAAAGAACCAGACCTGTGTCTTCTCTTT-CTCTGTCAGTGTCAGCTTTCTGATCCCTGGAAGGGATGAAAATAAGAAATGGATTTGTTGTAGG----------tttttttttta---atttgttta
s macFas5.chr6                 180269885 651 - 181584905 taaagcagggattgttcagtgtccct-cttcgcaacgaggtcgtcagctcctc--g----ggcaggcaggtcttctcattagctggggtggcccatgcccagcacgtggcagggtctccatcagggtttgctgagtgaGCGTTCTGAGAGCTG-GGAGAATGCCGTGGAACCCAGAAGCAGCACGGGCAGATTTCGGCTTTGTA-GGAGAACACGGAGCTTCCGCGATAATGGGGTGTAAAGTTAGGGCACGGCCGTGACAGA----------ACCCCGTGTGACGTTCGGACGTTGGGGCTCCGCCCACACGACCACTGAGGGAGCTT-GTTGTGGGGAAGATGCGCTCATCTCGGGGACGTCTGACGGTTGAGCTTACGAATGTGCAGTTTGGAGACATTAACACAGAAATGACAGTTGAAGTCTTGAGTTTGGGGGAGGTTCTTCAG-AATGAGTC----AGAGAGAGACACACACATCTGCCTCTTGTT-----TGACTCGTCCTG----GACTTCTCT--GGGTTGCTTTTCTGACCTGTGGAC-GATGGAGACCCC----TGAAGTGG------------TGCTAAAGAACCAGACCTGTGCCTTCTCTTT-CTCTGTCAGTGTCAGCTTTCTGGTCCCTGGAAGGGATGAAAATAAGAAATGAATTTGTTGTAGG-----tt--ttttttttttta---atttgttta
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173156202 663 - 174439528 ttaagcaggGATTGTTCAGTGTCCCT-CTTCACAACGAGGTCGTCAGCTCCTC--G----GGCAGGCACATCTTCTCATTAGCTGGGGTGGCCCATGCCCAGCACGTGGTAGGGTCTCCATCAGGGTTTACTGAATGAGCATTCTGAGAGCTG-GGAGAATGCCATGGAACCCAGAAGCAGCACAGGCAGATTTCGGCTTTGTA-GGAGAACATGGAGCTTCTGCGATAATGGGATGTAAAGTTAGGGCACAGCCGTGACAGA----------ACCCCGTGTGACGTTCGGACATTGGGGCTCAGCCCACACGACCACTGAGGGAGCTT-GTTGTGGGGAAGATGCGCTCATCTCAGGGACGTCTGACGGTTGAGCTTACGAATGTGCAATTTGGAGACATTAACACAGAAATGACATTTGAAGTCTTGAGTTTGGGGGAGGTTCTTCAG-Aatgagtc--agagagagagacacacacatcTGCCTCTTGTTTGAGGTGACTCGTCCTG----GACTTCTCT--GGGTTGCTTTTCTGACCTGTGGAC-GATGGAGACCCC----TGAAGTGG------------TGCTAAAGAACCAGACCTgtgccttctcttt-ctctgtcagtgTCAGCTTTCTGATCCCTGGAagggataaaaataagaaatgaatttgttgtaggttttttt--ttttttttttta---atttgttta
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89602268 667 -  91010382 ttaagcagggattgttcagtgtccct-cttcacaacgaggttgtcagctcctc--g----ggcaggcaggtcttctcattcgctggggtggcccacgcccagcgcgtggcagggtctccatcagggtttactgaGGGAGCATTCTGAGAGCCG-GGAGAATGCCGTGGAACCCAGAAGCAGCACAGGCAGATTTCGGCTTTGTA-GGAGAACATGGAGCTTCCGCGATAATGGGGTGTAAAGTTAGGGCACAGCCGTGACAGA----------ACCTCGTGTGACGTTCGGACATTGGGGCTCAGCCCACACGACCACTGAGGGAGCTT-GTTGTGGGGAAGATGCGCTCATCTCGGAGACGTCTGACGGTTGAGCTTACAAATGTGCAATTTGGAGACATTAACACAGAAATGACAGTTGAAGTCTTGAGTTGGGGGGAGGTTCTTCAG-AATGAGTCAGAGAGAGAGAGACACACACATCTACCTCTTGTTTGAGGTGACTCGTCCTG----GACTTCTCT--GGGTTGCTTTTCTGACCTGTGGAC-AATGGAGACCCC----TGAAGTGG------------TGCTAAAGAACCAGACCTGTGCCTTCTCTTT-CTCTGTCAGTGTCAGCTTTCTGATCCCTGGAAGGGATGAAAATAAGAAATGAATTTGTTGTAGGttttttttgttttttttttta---atttgttta
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    148712 650 - 204313951 --aggcagggattgttcagtgtccctaattcgcaacaaggtcatgtgcttcttggg----ggcgggcaggtcttctcattgaccggggttctccaagcccagcacatggcagggcctccatcagggtttcctgagtgaGCACCCTGAGAGCTG-GGAGGGTGCCGTGGACCCAAGAAGCAGCACAGGCGGATTTCAGCTTCGTA-GGAGAACATGGAGCTTCTGTGATCGTGGGGTGCAAAGTTAGGACACAGCTGTGACAGA----------ACC-CATGTGACATTTAGGCATT--GGCTCAGCCCACGTGACCACTGAAGGAGCTTCGTCCTGGGGGAGATGAACTCACCTTGGGGACGTCTGATGGTTGAGGTTACGAATGTGCAGTTTGGAGACATTAACACAGAAATGACAGTTGCAGTCTTGAGTTTGGGGGACGCTTTTCAGAAATGAGTC--AGAGAGAG------ACACATCTGCCTCTTGTTTGATGTGACTCGTCGTGATGTGACTTTCCT--GGATTGCTTTTCTAACTTGTGGAC-TACAGAGACCCC----TGTAGTGG------------TGCTAAGGAACCAGACCTGTGTCTTCTTTTT-CTCTCTCAGTGGCATCTTTCTGATCCCTGGCAGGGATGAAAATAAAAAATGTATTTGTCGTGGG-------------GTTTTGTA---Atttgttta
i calJac3.chr2                 C 0 C 0
s canFam3.chr34                 30172068 610 -  42124431 tagagccatgactgttcagtattcct-ctccctgactcagtggtctgctccca--gaggtgggggccagtactgct---------gtgttcacagtgcctgacgcacagtaggacct-gggcagtatttac-aagtgaatgtCCTCACAGCTGTGGGGGATGCTGTTGA--CGAGATGTGGCATGGGCACAGT----CGCTGTAGGGAGGACATCAAGCTGTCCCAGTAGTAGAGTATAAAGCTGAGATG-AGCTGTGGCAGACATGACCCCCCCCCCCCAAGATGTT-GGTAACT--------GCCCA---------------------GTCATGGACAGATTGAGCTCCTCTT-GGGTCCTCagacagttgagtgtgcaaatgtggggttcagaaggg--aggtctgggctgagggtgcaggtct--ggTTT-------GTTATCCAGAAGTGAATC--AGAGAAGGAGA----------------------GATGAGTCTCATTCTG----GACTTTCTTTCTGATTGCTTTTCTGATCTATCAACTGAGGGACACCACACTTTATGGCAGTACCACCCACCTTGCTACAGAACCAGATCTGTTTTTTCTCTTTGCTCTGTCAGTATATTTTTTCTGATCCCTGACA--GATGAAAAATAAAAATG---TTTAAGTAGT---------TTTGCTTCTTTAAGGatttattta
i canFam3.chr34                I 21 I 531
e rheMac3.chr6                      1508 6523 + 180491593 M
e mm10.chr13                    46087414 246 - 120421639 I
e ponAbe2.chr3                 199687559  12 + 202140232 I
e nomLeu3.chr11                120785647 3854 + 123690457 I
e panTro4.chr3_GL389630_random      4856  20 +    103936 I

a score=68045.000000
s hg38.chr3_KI270935v1_alt         40368 86 +    197351 gagatggggtcttgctctgttgcccaggc----tggagtgcagtggagcaatcttgactcactgcagcctttgtctcccaggctcaaacg
s macFas5.chr6                 180270536 86 - 181584905 gagacggggtcttgctctgttgcccaggc----tggagtgcagtggagcagtcttggctcactgcagcctttgtctcccaggctcaaagg
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173156865 86 - 174439528 gagacggggtcttgctctgttgcccaggc----tggagtgcagtggagcagtcttggctcactgcagcctttgtctcccaggcttaaagg
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89602935 86 -  91010382 gagacggggtcttgctctattgcccaggc----tggggtgcagtggagcagtcttggctcactgcagcctttgtctcccaggctcaaagg
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    149362 88 - 204313951 gagatagggtcttgctctgtt--ccaggctggatggagtgcagtggagcagtcttgtctcaccgcagccagtgcctcccggactcaaaca
i calJac3.chr2                 C 0 C 0
e rheMac3.chr6                      1508 6523 + 180491593 M
e mm10.chr13                    46087414 246 - 120421639 I
e canFam3.chr34                 30172678 531 -  42124431 I
e ponAbe2.chr3                 199687559 12 + 202140232 I
e nomLeu3.chr11                120785647 3854 + 123690457 I
e panTro4.chr3_GL389630_random      4856 20 +    103936 I

a score=243770.000000
s hg38.chr3_KI270935v1_alt         40454 209 +    197351 atccttgcacctcagcctcccaaatagctgggactacaggcatgtgttaccatgcccagctaatttttgagggtttttttgtttttggtagagacagggtgtcaccattttaagcccaggctggtctcaaacgccagggcttaggcgatcctcctgcctcggcccctcagggtgctggcattatagccatgagccactgcacccggccT
s panTro4.chr3_GL389630_random      4876 209 +    103936 atccttccacctcagcctcccaaatagctgggactacaggcatgtgttaccatgcccagctaatttttgagggtttttttgtttttggtagagacagggtgtcaccattttaagcccaggctggtctcaaacgccagggcttaggcgatcctcctgccttggcccgtcaaggtgctggcattatagccatgagccactgcacccggccT
i panTro4.chr3_GL389630_random I 20 C 0
s macFas5.chr6                 180270622 207 - 181584905 atccttccacctcagcctcccaaacggctgggactacaggcatgcgttaccacgcccggctaatttttgagggttgttttgtttttggtagagatggggtgtcaccgtttt--gcccaggctggtctcaaactccagggcttaggcgatcctcctgcctcggcccctcagagtgctgggattatagccatgagccactgcacctggtcT
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173156951 207 - 174439528 atccttccacctcagcgtcccaaacggctgggactacaggcatgcgttaccatgcccggctaatttttgagggttgttttgtttttggtagagacggggtgtcaccgtttt--gcccaggctggtctcaaactccagggcttaggcgatcctcctgcctcggcccctcaaagtgctgggattatagccatgagccactgcaccgggtct
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89603021 207 -  91010382 atccttccacctcagcgtcccaaacggctgggactacaggcatgcgttaccatgcccagctaatttttgagggttgttttgtttttggtagagacggggtgtcaccgtttt--gcccaggctggtctcaaactccagggcttaggcgatcctcctgcctcggcccctcagagtgctgggattatagccatgagccactgcacccggccT
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    149450 207 - 204313951 atccttccacctcagcctcccaaacagctgagactacaggcatacattaccatgcccagctttatttttttattttttatttttttggcagagacatggtttcaccatttt--gcccaggctgatctcaaactcctgagcttaaggaatccacctgccccagcctcccagagtgctgggattccaggcatgagccaccgcgcctagccT
i calJac3.chr2                 C 0 C 0
e rheMac3.chr6                      1508 6523 + 180491593 M
e mm10.chr13                    46087414 246 - 120421639 I
e canFam3.chr34                 30172678 531 -  42124431 I
e ponAbe2.chr3                 199687559  12 + 202140232 I
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=413165.000000
s hg38.chr3_KI270935v1_alt         40663 327 +    197351 GTTGTA-TTTTTTATTACTGTTTTTAATCAGCAAAATGTCAGTGAGCCCCTGAATTCCCTC-TGTAATTTGCTTAGAGCTCCACTTCTCATGCTTTGTCTTCAATATGTGAGAAGTAA-CCACAG----AAAAAAGAGCATGGAAACTTAGAAAATCAAAAGGCAGGTGAGATGCAAGAATCACATTCTTGTCTTGAAAGCAAGATTGCCCTTTTTGTATACTAATAAAAATTGTAGCTTTTGAAATACATTTAGTTTA------------GGGTTTTTGATCTCCTTTGTTAAAATTCGAGAGCTTGGCACGCCCTGTTTCTCATCGCACTGAGGAGTCACAGAG
s panTro4.chr3_GL389630_random      5085 327 +    103936 GTTGTA-TTTTTTATTACTGTTTTTAATCAGTAAAATGTCACTGAGCCCCTGACTTCCCTC-TGTAATTTGCTTAGAGCTTCACTTCTCATGCTTTGTCTTCAATATGTGAGAAGTAA-CCACCG----AAAAAAGAGCATAGAAACTTAGAAAATCAAAAGGCAGGTGAGATGCAAGAATCACATTCTTGTTTTGAAAGCAAGATTGCCCTTTTTGTATACTAATAAAAATTGTAGCTTTTGAAATACATTTAGTTTA------------GGGTTTTTGATCTCCTTTGTTAAAATTCGAGAGCTTGGCACGCCCTGTTTCTCATCGCACTGAGGAGTCACAGAG
i panTro4.chr3_GL389630_random C 0 C 0
s macFas5.chr6                 180270829 330 - 181584905 GTTGTATTTTTTTATTACTTTTTTTAATCAATAGAATGTCACTGAGTCCCTGAATTCCCTC-TGTAATTTGCTTAGAGCTCCACTTCTCATGCTTTGTCTTCAATATGTGAGAAGTAATCCACAG---AAAAAAAGAGCATTGAAACTTAGAAAATCAAAAGACAGGCAAGATGCAAGAATCACATTCTCGTTTTAAAAGCAAGATTGCCCTTTTTGTATACTAATAAAAATTGTAGCTTTTGAAATACGTTTACTTTC------------GGGTTTTTGATCTCCTTTGTTAAAATTAGAGAGCTAGGCATGCCCTGTTTCTCATCGCCTTGAGGAGTCACAGAG
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173157158 329 - 174439528 gttgtatttttttgttactttttttaatcaataaaatgtCACCGAGCCCCTGAATTCTCTC-TGTAATTTGCTTAGAGCTCCACTTCTCATGCTTTGTCTTCAATATGTGGGAAGTAATCCGCAG----AAAAAAGAGCATTGAAACTTAGAAAATCAAAAGACAGGTGAGATGCAAGAATCACATTCTTGTTTTAAAAGCAAGATTGCCCTTTTTGTATACTAATAAAAATTGTAGCTTTTGAAGTACGTTTAGTTTC------------GGGTTTTTGATCTCCTTGGTTAAAATTCGAGAGCTAGGCATGCCCTGTTTCTCATCGCCTTGAGGAGTCACAGAG
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89603228 329 -  91010382 GTTGTATTTTTTTATTACTTTTTTTAATCAATAAAATGTCACTGAGCCCCTGAATTCCCTC-TGTAATTTGCTTAGAGCTCCACTTCTCATGCTTTGTCTTCAATATGTGAGAAGTAATCCACAG----AAAAAAGAGCATTGAAACTTAGAAAATCAAAAGACAGGTGAGATGCAAGAATCACATTCTCGTTTTAAAAGCAAGATTGCCCTTTTTGTATACTAATAAAAATTGTAGCTTTTGAAATACGTTTAGTTTC------------GGGTTTTTGATCTCCTTTGTTAAAATTAGAGAGCTAGGCATACCCTGTTTCTCATCGCATTGAGGAGTCACAGAG
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    149657 341 - 204313951 GTG----TTTATTATTACTGTTTTTAACCGATCAAATGTCACTGACCTCCTGAATTTCCTC-TGTAATTTGCTTAGAGCTCCACTTCTCATGCTTTGTCTTCAATATGTGAGAAGCTATCCACACAAAAAAAAAAGAGCATTGAAACTTAGAAAATCAAAAGGCAGGTGAGATACGAGAATCACATTCTTGTTTTAAAAGCAAGATTGCCCTTTTTGTATTCTAATACAAATTGTAGCTTTTGAAATACATTCAGTTTAGGGTTTTTTTGTGGGTTTTTGATCTCCTTTGTTAAAATCTGAGCGCTCAGCATGCCCAGGTTTTCATGGCGTCGAGGAGTCACAGAG
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46087660 282 - 120421639 GTTAGT-TTTCTTACTTCAGTTTCT-----GTCTAGTGTCTCTGAGCCTCTGGAGCCAGTCACATACTGTGTTTAGCACTTCATTTCTTATACTTTCTTTACAATATATAAAAATAAA-CTACCC----GACAGATGTTACTGAAGCTATGAAAAGTGAAAAGCA--------------------------CTTTTAGAGCATG--TAACCTTTTGGCATATGAAAGGAAAAC-TGGCTTTAAAATAACCCTTACTTAG----------------------TCTCTTCCCTTAAAACTCAATA-CTTGGCATCCCTTGTCTTTCCTTACACTGAAG-GACACAAAA
i mm10.chr13                   I 246 I 38
e rheMac3.chr6                      1508 6523 + 180491593 M
e canFam3.chr34                 30172678 531 -  42124431 I
e ponAbe2.chr3                 199687559  12 + 202140232 I
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=109372.000000
s hg38.chr3_KI270935v1_alt         40990 85 +    197351 CCGCTgtttggggcacagaccgccggactgcccaggtttgggtttgagctctgtcctcagctgcatgactggatgttaccaagcg
s panTro4.chr3_GL389630_random      5412 85 +    103936 CCGCTATTTGgggcacagaccgccggactgcccaggtttgggtttgagctctgtcctcagctgcatgactggatgttaccaagcg
i panTro4.chr3_GL389630_random C 0 C 0
s macFas5.chr6                 180271159 85 - 181584905 CCGCTgtttggagcacagaccgccagactgcccaggtttgggtttgagctgtgtcctcaactgcatgactggatgttaccaagcg
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173157487 85 - 174439528 CCGCTGTTCGGAGCACAGACCGCCGGACTGCCCGGGTTTGGGTTTGAGCTGTGTCCTCAACTGCATGACTGGATGTTACCAAGCG
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89603557 85 -  91010382 CCGCTgtttggagcacagaccgccggactgcccaggtttgggtttgagctgtgtcctcaactgcatgactggatgttaccaagcg
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    149998 84 - 204313951 CCGCTgtttggagcacacaccgccgggctgcccaggttggggtttgaactctgtcctcagctgcatgactggatgttacc-agca
i calJac3.chr2                 C 0 C 0
e rheMac3.chr6                      1508 6523 + 180491593 M
e mm10.chr13                    46087942 38 - 120421639 I
e canFam3.chr34                 30172678 531 -  42124431 I
e ponAbe2.chr3                 199687559 12 + 202140232 I
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=45484.000000
s hg38.chr3_KI270935v1_alt         41075 45 +    197351 ttaatttgcttgtcactgagaaagggggtcatactacccagagtt
s panTro4.chr3_GL389630_random      5497 45 +    103936 ttaatttgcttgtcactgagaaagggggtcgtactacccagagtt
i panTro4.chr3_GL389630_random C 0 C 0
s macFas5.chr6                 180271244 44 - 181584905 gtaatttgc-tgtcactgagaaagcgggtagtactacccggagtt
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173157572 44 - 174439528 GTAATTTGC-TGTCACTGAGAAAGCGGGTAGTACTACCCGGAGTT
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89603642 44 -  91010382 gtaatttgc-tgtcaatgagaaagtgggtagtactacccggagtt
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    150082 45 - 204313951 ttaatgtgcttgtcagtgagaatgggggtcctactacctggagtt
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46087980 40 - 120421639 TTTTTTTTTTTGCCTCTGAGGATAGACTTCTTAGTACCCA-----
i mm10.chr13                   I 38 C 0
e rheMac3.chr6                      1508 6523 + 180491593 M
e canFam3.chr34                 30172678 531 -  42124431 I
e ponAbe2.chr3                 199687559 12 + 202140232 I
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=178606.000000
s hg38.chr3_KI270935v1_alt         41120 118 +    197351 gttgtaagacttaaatgagtttaatatgtggaaagcagctagaactgcccatagcaagtgcagtgtaaagatgaactaaaataatcattattactGTTCTTGCCACTGTTTGGGTAAC
s panTro4.chr3_GL389630_random      5542 118 +    103936 gttgtaagacttaaatgagtttaatatgtggaaagcagctagaactgcccatagcaagtgcagtgtaaagatgaactaaaataatcattattactGTCCTTGCCACTGTTTGGGTAAC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199687571 118 + 202140232 gttgtaagacttaaatgagtttaatatgtggaaagtagctagaactgcccatagcaagtgcagtgtaaatattaactaAAAGAATCATTATTACCGTCCTTGCCACTGTTTGGGTAAC
i ponAbe2.chr3                 I 12 C 0
s macFas5.chr6                 180271288 114 - 181584905 gttgtaagacttaaatgagtt----atgtggaaagcagctggaactgcccctagcaagtgcagtgtgaatattaagtaaaataatcattattactGTCCTTGCCACTGTTTGGGTAAT
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173157616 116 - 174439528 GTTGTAAGACttaaatgagtt-aacatgtgGAAAGCAGCTAGAACTGCCCC-AGCAAGTGCAGTGTGAATATTAACTAAAATAATCATTATTACTGTCCTTGCCACTGTTTGGGTAAT
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89603686 116 -  91010382 gttgtaagacttaaatgagtt-aacatgtggaaagcagctagaactgcccc-agcaagtgcagtgtgaatattaactaaaataatcattattactGTCCTTGCCACTGTTTGGGTAAT
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    150127 107 - 204313951 ---gtaaagcttaaatgagtt-aataggcggaaagcagctagaactgtccatggcaaatGCAGTGT----ATTAACTAGAATA---ATTGTTACTGACCTTGCCACTGTTTGGGTAAT
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46088020  80 - 120421639 -TCATAGACATGAAATGAGTA-AATGTTTAG------------ACT------------TGAAACATAAATACTAACCATTAAAATAATTTTT------------GCTGTTTCAGGACT
i mm10.chr13                   C 0 C 0
e rheMac3.chr6                      1508 6523 + 180491593 M
e canFam3.chr34                 30172678 531 -  42124431 I
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=1296357.000000
s hg38.chr3_KI270935v1_alt         41238 646 +    197351 TTAGATATGAATTCTCCAAGCTAG-TAT-------TCTTAAC-----TAGTCACCACAGTATCATAGTGCAAAAGAATGTTCAAAAATTAAAACAAAATTTGAGGCATCCAACGTACACCGGGCTGTAATCAGAGTATTGGCCAGAGGTCTGTG------------GGCCGGCCTTTCTCCTCTCTGGGGACGCCACTCTGCCCCAGCCTCTGCTGCAGCTGTCAGCCTTGTCAGTGCTTTTTGTTATCCAGACTTTCTACTGTATCTTAACTG---TTCTTTCTGTTCAGTTTT----GCATATAATGCCTTCTGCATATCTTTTTTGTCTCTCCCCCAAAAAATATCTTGTAAAAAAAAGTAATGCATTTGAAATAGAGACCTAGCAATTGTTAGGTTATAAATG--TG-------TG-GTTTTTTGCAGGCACATATGGTGCTGGTTGTCTCATTACGGAAGGATGTCGTGGAGAGGGAGGCATTCTCATTAACAGTCAAGGCGAAAGGTTTATGGAGCGATACGCCCCCATCGCGAAGGACCTGGCGTCTAGAGATGTGGTGTCTCGGTGGATGACTCTGGAGATCCGCGAAGGAAGGTGCGTGTGG--------------------------TTTACCACCAG----------CACTGTCTGA---------GCGGGCACACGGGCC--------------------------------------------------------------------GGGGTTGCTTCTGTGAGTTTCAGCAC---CGCTCGCCCTCACCT----
s panTro4.chr3_GL389630_random      5660 646 +    103936 TTAGATATGAATTCTCCAAGCTCG-TAT-------TCTTAAC-----TAGTCACCACAGTATCATAGTGCAAAAGAATGTTCAAAAATTAAAACAAAATTTGAGGCATCCAGCGTACACCAGGCTGTAATCAGAGTATTGGCCAGAGGTCTGTG------------GGCCGGCCTTTCTCCTCTCTGGGGACGCCACTCTGCCCCAGCCTCTGCTGCAGCTGTCAGCCTTGTCAGTGCTTTTTGTTATCCAGACTTTCTACTGTATCATAACTG---TTCTTTCTGTTCAGTTTT----GCATATAATGCCTTCTGCATATCTTTTTAGTCTCTCCCCCAAAAAATATCTTGTAAAAAAAAATAATGCATTTGAAATAGAGACCTAGCAATTGTTAGGTTATAAATG--TG-------TG-GTTTTTTGCAGGCACATATGGTGCTGGTTGTCTCATTACGGAAGGATGTTGTGGAGAGGGAGGCATTCTCATTAACAGTCAAGGTGAAAGGTTTATGGAGCGATACGCCCCCATCGCGAAGGACCTGGCGTCTAGAGATGTGGTGTCTCGGTGGATGACTCTGGAGATCCGCGAAGGAAGGTGCGTGTGG--------------------------TTTACCACCAG----------CATTGTCTGA---------GCGGGCACACGGGCC--------------------------------------------------------------------GGGGTTGCTTCTGTGAGTTTCAGCTC---CACTCGCCCTCACCT----
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199687689 644 + 202140232 TTAGATATGAATTCTCTAAGCTAG-TAT-------TCTTAAC-----TAGTCACTCCAGTATCATAGTGCAGAAGAATGTTCAAAAATTAAAACAAAATTTGAGGCATCCAACGTACACCAGGCTGTAATCAGAGTATTGGCCAGAGGTCTGTG------------GGCCGGCCTTTCTGCCCTCTGGGGACGCCACTCTGCCCCAGCCTGTGCTGCAGCTGTCAGCCTTGTCAGTGCTTTTTGTTATCCAGACTTTCTACTGTATGTTAACTG---TTCTTTCTATTCAGTTTT----GCATATACTGCCTTCTGCATATCTTTTTCATCTCTCCCCCAAAAAATATCTTG-AAAAAAAAATAATGCATTTGAAATAGAGAGCTAGCAATTGTTAGGTTATAAACG--TG-------TGTGGTTTTTGCAGGCACATATGGTGCTGGTTGTCTCATTACGGAAGGATGTAGTGGAGAGGGAGGCATTTTCATTAACAGTCAAGGCGAAAGGTTTATGGAGCGATATGCCCCCGTCGCGAAGGACCTGGCATCTCGAGATGTGGTGTGTCCGTCGATGA--CTGGAGATCTGCAAAGGAAGGTGCATGTGA--------------------------TTTGCTACCAG----------CATTGTCTGA---------GCGGGCACTCGGGCC--------------------------------------------------------------------GGGGTTGCTTCTGTGAGTTTCAGCAC---CGCTAACCCTCAGCT----
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180271402 645 - 181584905 TTAGATATGAATTCTCCAAGCTCG-TAT-------TCTTAAC-----TAGTTACCACAGTATCATAGTGCAAAAGAATGTTCAAAAATTAAAACAAAATTTGAGGCATGCAGCGTACACTGGGCTGTAATCAGAGTATCGGCCAGAGGTCTGTG------------GGCTGGCCTTTCTCCTCGCTGGGGACACTGCTCTGCCCCAACCTCTGCTGCAGCTGTCAGCCTCGTCAGTGCTTTTTGTTATCCAGACTTTCTACTGTATCTTAACTG---TTCTTTCTATTCAGTTTT----GCATATAATGCCTTCTGCATATCTTTTTCCTCTCTCCCCCAAAAAA-ATCTTG--AAAAAAAATAATGCATTTGAAATAGAGACCTAGCAATTGTTAGGTTATAAATGTTTG-------TG-GTTTTTTGCAGGCATATATGGTGCCGGTTGTCTCATTACGGAAGGATGTCGTGGAGAGGGAGGCATTCTCATTAACAGTCAAGGCGAAAGGTTTATGGAGCGATACGCCCCCGTGGCGAAGGACCTGGCGTCTAGAGATGTGGTGTCTCGGTCGATGACTCTGGAGATCCGCGAAGGAAGGTCCGTGTGA--------------------------TTTACCACCAG----------CATTGTCTGA---------GTGGGCACACGGGCC--------------------------------------------------------------------GGGGTTGCTTCTGTGAGTTCCAGCAC---CGCTCGCCCTCACCT----
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173157732 641 - 174439528 TTAGATATGAATTCTCCAAGCTCG-TAT-------TCTTAAC-----TAGTCACCATAGTGTCATAGTGCAAAAGAatgttcaaaaattaaaacaaaatttgaggCATCCAGCGTACACTGGGCTGTAATCAGAGTATCGGCCAGAGGTCTGTG----------------GGCCTTTCTCCTCGCTGGGGACACTGCTCTGCCCCAACCTCTGCTGCAGCTGTCAGCCTTGTCAGTGCTTTTTGTTATCCAGACTTTCTACTGTGTCTTAACTG---TTCTTTCTATTCAGTTTT----GCATATAATGCCTTCTGCatatctttttcctctctcccccaaaaaatatcttg---aaaaaaataatgcatttgaaaTAGAGACCTAGCAATTGTTAGGTTAtaaatgtttg-------tg-gttttttgCAGGCATATATGGTGCCGGTTGTCTCATCACGGAAGGATGTCGTGGAGAGGGAGGCATTCTCATTAACAGTCAAGGCGAAAGGTTTATGGAGCGATACGCCCCCGTGGCGAAGGACCTGGCGTCTAGAGATGTGGTGTCTCGGTCGATGACTCTGGAGATCCGTGAAGGAAGGTCCGTGTGA--------------------------TTTACCACCAG----------CATTGTCTGA---------GTGGGCACACGGGCC--------------------------------------------------------------------GGGGTTGCTTCTGTGAGTTCCAGCAC---CGCTCGCCCTCACCT----
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89603802 645 -  91010382 TTAGATATGAATTCTCCAAGCTCG-TAT-------TCTTAAC-----TAGTTACCACAGTATCATAGTGCAAAAGAATGTTCAAAAATTAAAACAAAATTTGAGGCATCCAGCGTACACTGGGCTGTAATCAGAGTATCGGCCAGAGGTCTGTG------------GGCTGGCCTTTCTCCTCGCTGGGGACACTGCTCTGCCCCAACCTCTGCTTCAGCTGTCAGCCTCATCAGTGCTTTTTGTTATCCAGACTTTCTACTGTGTCTTAACTA---TTCTTTCTATTCAGTTTT----GCATATAATGCCTTCTGCATATCTTTTTCCTCTCTCCCCCAAAAAATATCTTG---AAAAAAATAATGCATTTGAAATAGAGACCTAGCAATTGTTAGGTTATAAATGTTTG-------TG-GTTTTTTGCAGGCATATATGGTGCCGGTTGTCTCATTACGGAAAGATGTCGTGGAGAGGGAGGCATTCTCATTAACAGTCAAGGCGAAAGGTTTATGGAGCGATACGCCCCTGTGGCGAAGGACCTGGCGTCTAGAGATGTGGTGTCTCGGTCGATGACTCTGGAGATCCGCGAAGGAAGGTCCGTGTGA--------------------------TTTACCACCAG----------CGTTGTCTGA---------GTGGGCACACGGGCC--------------------------------------------------------------------GGGGTTGCATCTGTGAGTTCCAGCAC---TGCTCACCCTCACCT----
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    150234 703 - 204313951 TTAGATGTGAATTCTCCAGGCTGGTTAT-------TCTTAACTAAAGTAGTCACCACAGTATCATAGTGCAAAAGAATGTTCAAAAATTAAAACCAAATTGGAGGCATTTAAC-CACAGCAGGCTGCAATCCAAGTAT-GGCCACAGCTCTGTG------------GGCT--CCGTTCTGCTCGCTGGGGACTCCGCTCTGCCCAGACC--TGCTGCA-CCGTCAGCCCTGTCAGTGCTCCTTGGTATCCAGACTTCCTACTGTATCTTAACTTTTCTTCTTTCTATTCAGTTTT----GCATATGATGCCTTCTGCCTATC--CTTCCTCTCTACCGT-AAAAATACCTTG------AAAAAAATGTGTTTGAAATAGAGACCTAGCAATTGTTGAGTTATAAATGTTTG-------T--GTTTTTTTCAGGCATCTATGGTGCTGGGTGTCTCATCACAGAAGGATGTCGTGGAGAGGGAGGCATTCTCATTAACAGTCAGGGCGAAAGGTTTATGGAGCGATACGCCCCCGTTGCGAAGGACCTGGCATCCAGAGATGTGGTGTCTCGGTCCATGACTCTGGAGATCCGCGAAGGAAGGTCTGTATG---------------------------TTTATCACCAG----------AGTCGTCTGA---------GCAGGCACACGGGCACGTGCACACTCTTCCTTCCCTTCAC-TTCCTCTTTGGT-GACTTCATGTTTGTTTTAGCATCTGGGAGGGCGTTGCTTC--TGAGTTTCAGCAC---TGCCCGCCCTCACCT----
i calJac3.chr2                 C 0 I 154
s mm10.chr13                    46088100 631 - 120421639 TAAGATAGAAATTCTCTAAGTTGT-TTTATCCCTGCCTAAAC-----TTGTTATCGCATT-TCTTGGTATAAAGATATATTTAAAAAC---ATTAAATCTATAAGCATGGA--------TGGTGTTTAGTCAGAGTATGTGTTAGA----------------------------------CCCTGTGAGTGAGCTGCTGTTCCTGAAGCTCTTGTG---CTTTCTGGTTTGTTGCTGCTGCTTGTCACACACA-TTCCTTCTCCTACTTGACTT---TTCTTCTTA-----TTTT----GAGTTTAATGTTCTTTGTGTCTA------------CTCCCAAAAAGTGGCTTCTAAAGAAGGATTAACCATTTGAAGTAGTTTCCTAGTGCTCGTTCATTTATAAACATTTAATC--ATTG-GATTTTTACAGGTATATACGGTGCTGGCTGCCTCATCACAGAAGGGTGTCGTGGAGAGGGGGGGATTCTCATCAACAGTCAAGGTGAAAGGTTCATGGAGAGATACGCACCTGTTGCCAAGGACCTGGCATCAAGAGATGTTGTGTCTCGATCCATGACTCTTGAGATCCGTGAAGGAAGGTC--TGTAA--------------------------TTCTCCTTCAG----------GGATGCAGGAGTGTAGGGGGTGGAAAAACGTGTC----------------------CACTTTTCTCTTTGGTAGGCAT------------------------TAGGTCACATC--TACTTTTGCACAC---AGGT-GCCCTGCCCT----
i mm10.chr13                   C 0 C 0
s canFam3.chr34                 30173209 686 -  42124431 TTAGATACAAACTTTCCAAACTGT-TTT-------TTTCTAC-----C--TCATCACAATTTCTTGGTATAAAACAACATTCTAAAATTAAAAGGAAGCCTGAGATATTTAACACGTACTTGGTTGTGTTGAAAGTTC---ACACATGGTTGTCATCGAAATATTCAGCCGAGCTATGTCATCACCACGGA-GCTGAGCTTTCCC--CTCCTGCTG----------CTTTGTCAGTACTTTTTGTTATCAAAACTTC--ACTCTTCCTTAACCT---TTCCTTTGTCTAACTCTTTTAGGAGCACAATGCCCTTTCCATATCTTTTTCCTTTCCCC----AAAAATGTCTTG---AAAAAAATT-TGCATTTGAAATACAGACCTAGCAATTGTTAGGTTATAAACATCTAATTAAATGG-GTTCTTTGCAGGTATATATGGTGCTGGTTGTCTCATTACGGAAGGATGCCGTGGAGAGGGAGGCATTCTCATTAACAGTCAAGGCGAAAGGTTCATGGAGCGATATGCCCCAGTCGCAAAGGACCTGGCATCCAGAGACGTTGTATCTCGGTCCATGACTCTGGAAATCCGTGAAGGCAGGTGTGTCAGAGCGCACATGCATGCATGCACCCCTCCTTTCTCTTTGGTGGCTGTTGTTGGTGTCTGT---------ATTTTAACATGGGCT--------------------------------------------------------------------GATGTGGCTTTTGTGTGTTTCAGCACCCACGCATCATCCCACCCAGCT
i canFam3.chr34                I 531 C 0
e rheMac3.chr6                      1508 6523 + 180491593 M
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=536265.000000
s hg38.chr3_KI270935v1_alt         41884 339 +    197351 TCGTGTGCAGGCACATGTGCACAGCCACCTCTCTCAGCTGCCGGCAGGC-GTCTGTTAGTCTGCGATATTTTCCTAAAGACCTACATTTTGAAAATTTTAGCCAGTTTCTT-----TCTCAAATCTGTGGAACAGAGTTT-CTCTTAG--------TGTGTGTGAGTATGTGACGGAGTATGGGAGAGAGAGACACGCA--CCCAACCTGAAGTCGGCGTGTGAGCCTTGGGTGTGGTGTCTGATACCCACAGATGTTTTTCGGCAGC----TTTCAAAGTGTGTGGGTCATTTGCCTTTCAGA---AGAACAGTTTGCAGCTCTTTCATTGCCTGACCCTGTTCT------TTAATGTGA---TAACACTT
s panTro4.chr3_GL389630_random      6306 339 +    103936 TCGTGTGCAGGCACATGTGCACAGCCACCTCTCTCAGCTGCCGGCAGGC-GTCTGTTAGTCTGTGATATTTTCCTAAAGACCTACATTTTGAAAATTTTAGCCAGTTTCTT-----TCTCAAATCTGTGGAACAGAGTTT-CTCTTAG--------TGTGTGTGAGTATGTGATGGAGTATGGGAGAGAGAGACACACA--CCCAACCTGAAGTCGGTGTGTGAGCCTTAGGTGTTGTGTCTGATACCCACAGATGTTTTTCGACAGC----TTTCAAAGTGTGTGGGTTATTTGCCTTTCAGA---AAAACAATTTGCAGCTCTTTCATTGCCTGACCCTATTCT------TTAATGTAA---CGACACTT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199688333 339 + 202140232 TCGGGTGGAGGCACATGTGCACAGCCACCTCTCTCAGCTGTGGGCAGGC-ATCTGTTAGTCTGTGATATTTTCCTAAAGACCTACATTTTGAAAATTGTAGCCAGTTTCTG-----TCTCAAATCTGTGGAACAGAGTTT-CTCTTAG--------AGTGTGTGAATATGTGACGGAGTATGAGAGAGAGAGACACACA--CCCAACCTGATGTCGGTGTGTGAGCCTTGGGTGTTGTGTCTGATACCCACAGATGTTTTTCGGCAGC----TTTCAAAGCGTGTGGGTTATTTGGCTTTCAGT---AAGACAATTTGCAGCTCTTTCATTGCCTGACCCTGTTCT------TTAATGTAA---TGACACTT
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180272047 328 - 181584905 TCGTGTGCAGGCACACGTGCACAGCCACCTCTCTCAGCTGCTGACAGGC-GTCTGTTAGTCTGTGGTATTTTCTTAAAGACCTACATTTTAAAAATTTTAGCCAGTTTCTT-----TCTCAGATCTGTGGAACAGAATTT-CTCTTAG--------TGTGGGTGAGTATGTGACAGAGTACGGGAATGAGAGACGCACA--CGCAACCTGAAGTCGGCACGTGAGCCTTGGGTGTTGTGTCTGATGCCCACAGGTGTTTTTCGGTAGC----TTTCAAAGGGTGTGGGTTATCTGGCTTTCAGT---TAAACAAGTTGCAGCTCTTTCATT-TCTGACCCTGTTCT------TTAATGT-------------
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173158373 329 - 174439528 TCGTGTGCAGGCACACGTGCACAGCCACCTCTCTCAGCTGCTGACAGGC-GTCTGttagtctgtggtattttcttaaagacctacattttgaaaattttagcCAGTTTCTT-----TCTCAGATCTGTGGAACAGAGTTT-CTCTtag--------tgtgtgtgagtatgtgacAGAGTGCGGGAGAGAGAGACGCACA--CGCAACCTGAAGTCAGCACGTGAGCCTTGGGTGTCGTGTCTGATGCCCACAGGTGTTTTTCGGCAGC---TTTTCAAAGGGTGTGGGTTACTTGGCTTTCAGT---AAAACAGTTTGCAGCTCTTTCATT-CCTGACCCTGTTCT------TTAATGT-------------
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89604447 329 -  91010382 TCGTGTGCAGGCACACGTGCACAGCCACCTCTCTCAGCTGCTGACAGGC-GTCTGTTAGTCTGTGGTATTTTCTTAAAGACCTACATTTTGAAAATTTTAGCCAGTTTCTT-----TCTCAGATCTGTGGAACGGAGTTT-CTCTTAG--------TGTGTGTGAGTATGTGACAGAGTACGGGAGAGAGAGACGCACA--CGCAACCTGAAGTCAGCACGTGAGCCTTGGGTGTCGTGTCTGATGCCCACAGGTGTTTTTCGGCAGC---TTTTCAAAGGGTGTGGGTTACTTGGCTTTCAGT---AAAACAGTTTGCAGCTCTTTCATT-CCTGACCCTGTTCT------TTAATGT-------------
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    151091 332 - 204313951 TCGTGTGCAGGCACACGTGCATAGCCAC--CTCTCAGCTACTGGCTGGC-ATCTGTTAGTCTGTGATATTTACCTAAAGACCTACATTTTGAAAACTTTAGCCAGTTTTTT-----TCTCAAATCTGTGGAACATAATTT-CTCTGAG--------TGTGTGTGAGTATGTGATAGATTATGGGAGAGAGAGACACACGCTCCCAACCTGAGGTCGGCATGTGAG-CTTGGCTGTTGCGTCTGATACCCACAGATGTTTGTCAGCATT----CTTCAAAGTGTGTGGGTTATTTGGCTTTCAGTTTAGAAACAATCTGCAG----GTCATTGCCTGACCCTGTTCC------TTAATGA--------CACTT
i calJac3.chr2                 I 154 C 0
s mm10.chr13                    46088731 309 - 120421639 CAGGGTTAGGGTTAGAGAATAAAGCTACGTC-ATTATTTTTTGACTAAC-ACCTGTTAATTTATGATATATCCTTAAAGGCATATATTTTGAGAGTCT--------------------TCACATAAGTGTATCATCATTTATTCTTGG--------TATGAGC-----------------------TGAGATTCTCAGG--CTCAGCTAATACTCAGCCTTAGGAGTTAATTTGTTTTAATCAATA-TTACAGGTGTTTT--GGCAGGTGTTCTTCAGGGCTTGTGTGTCACTTGTCTTTTAGT---GAAATTGCCTTAGGTTC--CAAGTGCCTGGCTTTAATCTAGGGACTTATTGTGGGTTTGACACTT
i mm10.chr13                   C 0 I 42
s canFam3.chr34                 30173895 298 -  42124431 --CTGTGTAGCC---TGTGTGTAGTTACCTTT----GCTGCCCTGGGACTATCTTTTCATTTTTGATATTGCTCTAAAAACCTATATTTTGGGAAGTTTGGGTGGTTTGATGTGAATCTCAAATCTGGAGATCAGATTTA-TTGTGGAGCATCATTTGCACATGAGTGT---------TGTGAGAGAGACGGATATGCT--TACAACCTGACGTTAGGATGTGGGCCTTTGATG------CTGAT---------------TTGGGACC----CT-----GTGTGTGGGCTCTT----GTTTGCT---GAAGCG---TTAGGCTC-TTCAGTGCCAG-CACTGTC--------TCACTGTGG---TGATGCTT
i canFam3.chr34                C 0 C 0
e rheMac3.chr6                      1508 6523 + 180491593 M
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=76715.000000
s hg38.chr3_KI270935v1_alt         42223 48 +    197351 GCTAAATATCTGCTGGTATCTGGTGTGGCCTTTAGAGGTTTTACATTT
s panTro4.chr3_GL389630_random      6645 41 +    103936 GCTAAATATCTGCTGGTAT-------GGCCTTTAGAGGTTTTACGttt
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199688672 41 + 202140232 GCTAAATATCTGCTGGTAT-------GGCCTTTAGAGGTTTTACATTT
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180272375 37 - 181584905 ----AATATCTGCTGGTAT-------GGCCTTTAGAGGTTTTACATTT
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173158702 37 - 174439528 ----AATATCTGCTGGGAT-------GGCCTTTagaggttttacattt
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89604776 37 -  91010382 ----AATATCTGCTGGTAT-------GGCCTTTAGAGGTTTTACATTT
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    151423 41 - 204313951 GCTGAGTATCTGCTGGTAT-------GGCCTTTAGAGGTTTCACATTT
i calJac3.chr2                 C 0 C 0
s canFam3.chr34                 30174193 41 -  42124431 GTCAGATATTTGGTGTTAC-------AGCCTCTAGATACTTTCTATTT
i canFam3.chr34                C 0 I 15
e rheMac3.chr6                      1508 6523 + 180491593 M
e mm10.chr13                    46089040 42 - 120421639 I
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=23882.000000
s hg38.chr3_KI270935v1_alt         42271 14 +    197351 TTATATTAAAAAAA
s panTro4.chr3_GL389630_random      6686 14 +    103936 ttatattaaaaaaa
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199688713 14 + 202140232 TTATGTTAAAAAAA
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180272412 14 - 181584905 TTATATTTAAAAAA
i macFas5.chr6                 C 0 I 315
s papAnu2.chr6                 173158739 14 - 174439528 ttatattaaaaaaa
i papAnu2.chr6                 C 0 I 4
s chlSab2.chr4                  89604813 14 -  91010382 TTATATTAAAAAAA
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    151464 14 - 204313951 TTATATTTAAAAAA
i calJac3.chr2                 C 0 C 0
e rheMac3.chr6                      1508 6523 + 180491593 M
e mm10.chr13                    46089040 42 - 120421639 I
e canFam3.chr34                 30174234 15 -  42124431 I
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=3314.000000
s hg38.chr3_KI270935v1_alt         42285 3 +    197351 AAA
s panTro4.chr3_GL389630_random      6700 3 +    103936 aaa
i panTro4.chr3_GL389630_random C 0 I 2
s ponAbe2.chr3                 199688727 3 + 202140232 AAA
i ponAbe2.chr3                 C 0 I 7
s macFas5.chr6                 180272741 3 - 181584905 aga
i macFas5.chr6                 I 315 C 0
s papAnu2.chr6                 173158757 3 - 174439528 aga
i papAnu2.chr6                 I 4 C 0
s chlSab2.chr4                  89604827 3 -  91010382 AAA
i chlSab2.chr4                 C 0 I 2144
s calJac3.chr2                    151478 1 - 204313951 --A
i calJac3.chr2                 C 0 C 0
e rheMac3.chr6                      1508 6523 + 180491593 M
e mm10.chr13                    46089040 42 - 120421639 I
e canFam3.chr34                 30174234 15 -  42124431 I
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=12930.000000
s hg38.chr3_KI270935v1_alt         42288 20 +    197351 GAAGTCGGATGGTTTCTTGT
s panTro4.chr3_GL389630_random      6705 20 +    103936 GAAGTCAGATGGTTTTTTGT
i panTro4.chr3_GL389630_random I 2 C 0
s ponAbe2.chr3                 199688737 20 + 202140232 GAAGTCAGATGGTTTTTTGG
i ponAbe2.chr3                 I 7 C 0
s macFas5.chr6                 180272744 20 - 181584905 gaaGTCAAATGTTTTTCTGG
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173158760 20 - 174439528 aaagtcaattttttttttga
i papAnu2.chr6                 C 0 I 315
s calJac3.chr2                    151479 18 - 204313951 GAAGT-AAATGGTTTTTGG-
i calJac3.chr2                 C 0 C 0
e rheMac3.chr6                      1508 6523 + 180491593 M
e mm10.chr13                    46089040 42 - 120421639 I
e canFam3.chr34                 30174234 15 -  42124431 I
e chlSab2.chr4                  89604830 2144 -  91010382 I
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=609209.000000
s hg38.chr3_KI270935v1_alt         42308 380 +    197351 AATATGGTggccctccgtatccatcggttccacatgtgtggtttcaaccaactatgtactgaaaataaaattgcatccttac-aaacacgcagacttttttttttccttgtcattgttcgctaagcaacacagtgtagcagctatttacctagcatttacattgtattaggtactatgagtaatcctggagttgctgtacaacttaaatgtaaaacttgaaatga-ggatgatttaaaatatggaggaggatgtgcataggttatatgcaaatactctgccattttatattagggacttgagcatccacggattttggtgtccgtgggggtcctggacccaacctgccacggatacgcagggacgac--tATTTGGCATAGAGG
s panTro4.chr3_GL389630_random      6725 377 +    103936 AATATGGTggccctccgtatctatctgttccacatgtgtggtttcaaccaactatgtactgagaataaaattgcatccttac-aaatacgcagactttttttt--ccttgtcattgttcgctaagcaacacagtgtagcagctatttacctagcatttacattgtattaggtactatgagtcatcctggagttgctgtacaacttaaatgtaaaacttgaaatga-ggatg-tttgaaatatggaggaggatgtgcgtaggttatatgcaaatactctcccattttatattagggacttgagcatccacggattttggtatccgtgggggtcctggacccaacctgccacggatacgcagggacgac--tATTTGGCATAGAGG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199688757 379 + 202140232 AATGTGGTggccctccgtatccatcggttccacatgtgtggtttcagccaactatgtattgaaaataaaattgcatcgttac-aaatatgcagacttttttt---ccttgtcattgttccctaaacaacacagtgtaacagctatttatgtagcatttacattgttttaggtactatgagtaatcctggagttgctgtaaaacttaaatataaaaccttaaatga-ggatgatttaaaatatggaggagaatgtgcataggttatatgcaaatactctcccattttatattagggacttgagcaaccacggattttggtatccgtgggggtcctggacccaacctggcatggatacgcaaggacgactgTATTTGGCATAGAGG
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180272764 379 - 181584905 AATATGGTggccgtctgtacccgttggttccacatgtgtggtttcaaccagctatgtattgaaagtaaaattgcaaccttac-aaatatgcagacttttttt---ccccgtcattgttccctaaacaacacagtttaacaactatttacgtagcatttacattgtattaggtactgtgagtaatcctggagttgttgtaaagcttaaatgtaaaactttaaatga-ggatgatgtaaagtatagaggaggatgtgcataggttatatacaaatactcttccattttatattagggacttgagcatccacggattttagtatccatgggggtcctggacccaacctgccacggatacgcagggacgattgTGTTTGGCATAGAGC
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173159095 376 - 174439528 aatatggtgGCCCTCCATACACATCGGTTCCACATGTGTGGTTTCAACCAGCTATGTATTGAAAGTAAAATTGCATCCTTAC-AAATATGCagacttttttt---ccttgtcattgtTCCCTAAACAACACGGTTTAACAACTATTTacgtagcatttacattgtattaggtactgTGAGTGATCCTGGAGTTGTTGTaaagcttaaatgtaaaactttaaatga-ggatgatttaaaatata---gaggatgtgcataggttatatacaaatactcTTCCATTTTATattagggacttgagcatccacggATTTTAGTATCCATGGGGGTCCTGGACCCAACCTGCCACGGATACGCAGGGACGACTGTGTTTGGCATAGAGC
i papAnu2.chr6                 I 315 C 0
s chlSab2.chr4                  89606974 379 -  91010382 AATATGATggccgtctgtacccgttggttccacatgtgtggtttcaaccagctatgtattgaaagtaaaattgcaaccttac-aaatatgcagacttttttt---ccccgtcattgttccctaaacaacacagtttaacaactatttacgtagcatttacattatattaggtactgtgagtaatcctggagttgttgtaaagcttaaatgtaaaacttgaaatga-ggatgatgtaaagtatagaggaggatgtgcataggttacatacaaatactcttccattttatattagggacttgagcatccacggattttagtatccatgggggtcctggacccaacctgccacggatacgcagggacgactgTGTTTGGCATAGAGC
i chlSab2.chr4                 I 2144 C 0
s calJac3.chr2                    151497 375 - 204313951 -ATATGGTggccctccatatccatgggttccacatgtgtggtttcaaccaactatgtgttggagatacagttgtatccttactgaacatgcagactttttt----ccttgtcattgttccttaaacaacacagcatgacaactacttatatagcatttacattgcgttaggtactatgagtaatcctggagttgtcgcaaaactgaagtgtacagctttaagtgagggatgatttaaagtctggaggaggatgtgcataggttatatgcagatactctcccatttcatattagagac--aaacatccacagattttggtatccatgggggtcctggagccagtctgccatggatacacagggatgac--tATTTGGTATAGAGG
i calJac3.chr2                 C 0 C 0
e rheMac3.chr6                      1508 6523 + 180491593 M
e mm10.chr13                    46089040  42 - 120421639 I
e canFam3.chr34                 30174234  15 -  42124431 I
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=-2105.000000
s hg38.chr3_KI270935v1_alt         42688 2 +    197351 C----C
s panTro4.chr3_GL389630_random      7102 2 +    103936 C----C
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199689136 6 + 202140232 CCTTTC
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180273143 6 - 181584905 CCTTTC
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173159471 6 - 174439528 CCTTTC
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89607353 6 -  91010382 CCTTTC
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    151872 6 - 204313951 CCTTTG
i calJac3.chr2                 C 0 C 0
s canFam3.chr34                 30174249 2 -  42124431 -CT---
i canFam3.chr34                I 15 C 0
e rheMac3.chr6                      1508 6523 + 180491593 M
e mm10.chr13                    46089040 42 - 120421639 I
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=117184.000000
s hg38.chr3_KI270935v1_alt         42690 63 +    197351 TAATGCTTTTACCAAGGACAGCCGCTGCAGGCTGTGA-TCCCTGAGAC--gag--tgtgagttcagta
s panTro4.chr3_GL389630_random      7104 63 +    103936 TAATGCTTTTACCAAGGACAGCCGCTGCAGCCTGTGA-TCCCTGAGAC--gag--tgtgagttcagta
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199689142 63 + 202140232 TAATGCTCTTACCAAGGACAGCCGCAGCAGGCTGTGA-TCCCTGAGAC--gag--tgtgagttcagtg
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180273149 63 - 181584905 TAATGCACTTACCAAGGACAGCCGCAGCAGGCTGTGA-TCCCTGAGAC--gag--tgtgagttcaggg
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173159477 63 - 174439528 TAATGCACTTACCAAGGACAGCCGCAGCAGGCTGTGA-TCCCTGAGAT--GAG--TGTGAGTTCAGGG
i papAnu2.chr6                 C 0 I 1113
s chlSab2.chr4                  89607359 58 -  91010382 TAATGCACTTACCAAGGACAGccgcagcaggctgtga-tccctgagat--gag--tgtgagtt-----
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    151878 61 - 204313951 TGATGCCATTACCAAGGACAAC--CAGCAGGTTGTGA-TCCCCAAGAC--Aaa--cgtgagttcagtg
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46089082 62 - 120421639 TAATATATTTACCAAGGAAAA---CAGGAAATCGTAG-TACCCGAGGC--AAGGATGTAAGATTGGTG
i mm10.chr13                   I 42 C 0
s canFam3.chr34                 30174251 60 -  42124431 TAATGCATTTATCAAGGAAAAC------ACATTGTAACTTTCTGATactagag--tatgagcctagcg
i canFam3.chr34                C 0 C 0
e rheMac3.chr6                      1508 6523 + 180491593 M
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=358772.000000
s hg38.chr3_KI270935v1_alt         42753 187 +    197351 agggcagagtttttgttctggttctcagctgtgtcccagcacctgggattgtccctggcatac-------agtagatgctt-----agaaaagatttgatgaGAGGGTGGCCGTACATGAGGG-GAAATTTTCCTCAGTATCAAAACATGTTGAAACTCACACGCTTCCAAGATGACGTATTCTCAGGTCTGCTGCCGTT
s panTro4.chr3_GL389630_random      7167 187 +    103936 agggcagagtttttgttctggttctcagctgtgtcccagcacctgggattgtccctggcacac-------agtagatgctt-----agaaaagatttgatgaGAGGGTGGCCGTACACGAGGG-GAAATTTTCCTCAGTATCAAAACATGTTGAAACTCACACGCTTCCAAGATGACGTATTCTCAGGTCTGCTGCCATT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199689205 187 + 202140232 agggcagagtttttgttctggttctcagctgtgtcccagcacctaggattgtccctggcacac-------agtagatgctt-----agaaaagatttgAGGAGAGGGTGACCATACATGAGGG-GAAATTTTGCTCAGTATCAAAACATGTTGAAACTCACACGCTTCCAAGATGACGTATTCTCAGGTTTCCCGCCGTT
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180273212 185 - 181584905 agggcagagtttttgttctgggtctcagctgtgtcccagcacctaggattgtccctggcacac-------agtagatgctt-----agaaaagatttgatgagagggtgaGCATAAATGAGGG-GAAATTTTCCTCAGTATCAAAAC--ATTGAAACTCACATGCTTCCAAGATGGCGTATTCTGAGGTCTCCTGCCGTT
i macFas5.chr6                 C 0 I 319
s papAnu2.chr6                 173160653 187 - 174439528 aGGGCAGAGTTTTTGTTCTGGGTCTCAGCTGTGTCCCAGCACCTAGGATTGTCCCttgcacac-------agtagatgctt-----agAAAAGATTTGATGAGAGGGCGACCATAAATGAGGG-GAAATTTTCCTCAGTATCAAAACATATTGAAACTCACATGCTTCCAAGATGACGTATTCTGAGGTCTCCTGCCGTT
i papAnu2.chr6                 I 1113 C 0
s chlSab2.chr4                  89607417 176 -  91010382 -----------tttgttctgggtctcagctgtgtcccagcacctaggatggtccctggcacac-------agtagatgctt-----aggaaagatttgatgaGAGGGCGACCATAAATGAGGG-GAAATTTTCCTCAGTATCAAAACATGTTGAAACTCACATGCTTCCAAGATGACGTATTCTGACGTCTCCTGCCGTT
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    151939 185 - 204313951 agggcagagtttttgttctggttctcagctgtgtcccagcacctaggattgtccctggcacag-------agtagacattt-----agaaaagattcgatgaGAGGGTGGGCATACATGAGGG-GAAATTTTCCTTAGTATCAGAAAATGTGGAAGCTCAC--GCTTCCATGATGACGTAGTCTCAGGTTTCCTGCCATT
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46089144 171 - 120421639 -------AGTATAGGCTCT-GTTCTTGGCTGTGTCC---TTCACAGAAGTGT-TCTGACACACTATGATTAACAAGTACCTGAAGGAAAAAAGTATCAATGGGACACTGACCATAGATGAAGGTGACATTTTCCTCAAGATCAAAGATTGTTCAGTCTAACATA-------------GTGATCTTAGCTCTTTCTT----
i mm10.chr13                   C 0 C 0
s canFam3.chr34                 30174311 183 -  42124431 acggctggatgtctgtcccagtcct-aggtgtgtcccagcacata--ctccaccctggcacat-------ggtaggtgctc-----agaaatgaggtgagaaatggatgGCCACAAGTGAGGA-GAGATTCTGTACAGCATAAGAACA-GTGGAACTTTATATGCTTCAGTGACTTCGTAATCTCATATTTTCTGTAATT
i canFam3.chr34                C 0 C 0
e rheMac3.chr6                      1508 6523 + 180491593 M
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=42144.000000
s hg38.chr3_KI270935v1_alt         42940 13 +    197351 GCCATTCTCTGCC
s panTro4.chr3_GL389630_random      7354 13 +    103936 GCCGTTCTCTGCC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199689392 13 + 202140232 GCTGTTCTCTGCC
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr6                      8088 13 + 180491593 GCCGTTCTCTGCC
i rheMac3.chr6                 M 6523 C 0
s macFas5.chr6                 180273716 13 - 181584905 GCCGTTCTCTGCC
i macFas5.chr6                 I 319 C 0
s papAnu2.chr6                 173160840 13 - 174439528 GCAGTTCTCTGCC
i papAnu2.chr6                 C 0 I 550
s chlSab2.chr4                  89607593 13 -  91010382 GCAGTTCTCTGCC
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    152124 13 - 204313951 ACTGTTCTCTGGC
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46089315 13 - 120421639 ACCATTCTTTGCC
i mm10.chr13                   C 0 C 0
s canFam3.chr34                 30174494 13 -  42124431 ACCATTCTTTGCC
i canFam3.chr34                C 0 C 0
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=37533.000000
s hg38.chr3_KI270935v1_alt         42953 15 +    197351 TTATGTGATGGTGTT
s panTro4.chr3_GL389630_random      7367 15 +    103936 TTATGTGATGGTGTT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199689405 15 + 202140232 TTATGTGATGGTGTT
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr6                      8101 15 + 180491593 TTATGTGATGGTGTT
i rheMac3.chr6                 C 0 I 4
s macFas5.chr6                 180273729 15 - 181584905 TTATGTGATGGTGTT
i macFas5.chr6                 C 0 I 4
s papAnu2.chr6                 173161403 15 - 174439528 TTATGTGATGGTGTT
i papAnu2.chr6                 I 550 I 4
s chlSab2.chr4                  89607606 15 -  91010382 TTGTGTGACGGTGTT
i chlSab2.chr4                 C 0 I 232
s calJac3.chr2                    152137 15 - 204313951 TTATGTGGTGGTGTT
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46089328  6 - 120421639 TCATGT---------
i mm10.chr13                   C 0 C 0
s canFam3.chr34                 30174507 15 -  42124431 TCACACCATGATGTC
i canFam3.chr34                C 0 C 0
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=1388282.000000
s hg38.chr3_KI270935v1_alt         42968 479 +    197351 CTGTCTTACCAGAGGCTGTGGCCCTGAGAAAGATCACGTCTACCTGCAGCTGCACCACCTACCTCCAGAGCAGCTGGCCATGCCCTTGCCCGGCATTTCAGAGACAGCCATGATCTTCGCTGGTGTGGACGTCACGAAGGAGCCGATCCCTGTCCTCCCCACCGTGCATTATAACATGGACGGCATTCCCACCAGCTACGAGGGGCAGGTGATGGTGCTGGCTTCTCTCCCACAGCTGGAAAGAAGGCTGGGACAATGGGGCCCATCTCGCAGTTGTCTCTTTAGATCTTAG-AGGAAGAGACAGATGTTTCCTTCCAGAAAGTACTGTATTGTTTGCTAAATTGCACTTGAAATTTCTATCACTG-GAGGATGGA--------AG-GAGGCT-----------------------------TAATA---------------------ATTTATTCCTCCTTAGTAAACTGTCA-------TAGATACA---TCATTTGCAG--CTTTTCCCATTTTATAA-TTACTTTCCTATATGATCTTGTGTTATTTCT
s panTro4.chr3_GL389630_random      7382 479 +    103936 CTGTCTTACCAGAGGCTGTGGCCCTGAGAAAGATCACGTCTACCTGCAGCTGCACCACCTACCTCCAGAGCAGCTGGCCATGCCCTTGCCCGGCATTTCAGAGACAGCCATGATCTTCGCTGGTGTCGACGTCACGAAGGAGCCGATCCCTGTCCTCCCCACTGTGCATTATAACATGGACGGCATTCCCACCAGCTACGAGGGGCAGGTGATGGTGCTGGCTTCTCTCCCACAGCTGGAAAGAAGGCTGGGACAATGGGGCCCATCTCACAGTTGTCTCTTTAGATCTTAG-AGGAAGAGACAGATGTTTCCTTCAAGAAAGTACTGTATTGTTTTCTAAATTGCACTTGAAATTTCTATCACTG-GAGGATGGA--------AG-GAGGCT-----------------------------TAATA---------------------ATTTATTCCTCCTTAGTAAACTGTCA-------TAGATACA---TCATTTGCAG--CTTTTCCCATTTTATAA-TTACTTTCCTATATGATCTTGTGTTATTTCT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199689420 471 + 202140232 CTGTCTTACCAGAGGCTGTGGTCCTGAGAAAGATCACGTCTACCTGCAGCTGCACCACCTACCTCCAGAGCAGCTGGCCACGTGCCTGCCCGGCTTTTCAGAGACAGCCATGATCTTCACTGGCGTGGACGTCACGAAGGAGCCGATCCCTGTCCTCCCCACCGTGCATTATAATGTGGACGGCATTCCCACCAGCTACAAGGGGCAGGTGATGGTGCTGGCTCCTCTCCCACAGCTGGAAAGAAGGCTGGGATGACGGGGCCCACCTTGCAGTTGTCTCTTTAGATCTTAG-AGGAAAAGACAGATGTTTTCTTCAAGAAAGTACAGTATTGTTTTCTAGATCGCACTTTAAATTTCTATTACTG-GAGAATGG---------AG-GGGGCT-----------------------------TAATA---------------------ATTTATTTCTCCTTAGTAAAGTGTCA-------TAGATACA---TCATTTGCAG--CTTTTTCCATTTTATAA-TTACTTTCTTATATGATCTTGTGT-------
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr6                      8120 480 + 180491593 CTGTCTTCCCAGAGGCTGTGGCCCTGAGAAAGATCACGTCTACCTGCAGCTGCACCACCTGCCTCCGGAGCAGCTGGCCACGCGCCTGCCCGGCATTTCAGAGACAGCCATGATCTTCGCTGGTGTGGACGTCACGAAGGAGCCGATCCCTGTCCTCCCCACCGTGCATTATAACATGGGCGGCATTCCCACCAACTACAAGGGGCAGGTGATGGTGCTGGCTGCCCTCCCACAGCTGGAAAGAAGGCTGGGACAACGGGGCCCACCTTGCAGTTGTCTCTTTAGATCGTAG-AGGAAAAGACAGATGTTTTCTTCAAGAAAGTTCTGTCTTGTTTTCTAGATTGTACTTTAAATTTCTATTACTG-GAGGATGG---------AG-GGGGCT-----------------------------TAATA---------------------ATTTATTCCTCCTTAGTAAATTGTCA-------TAGATGCA---TCATTTGCAGCCTTTTTTCCATTTTATAG-TTACTTTCCTATATGATCTCGTGTTAtttct
i rheMac3.chr6                 I 4 I 302
s macFas5.chr6                 180273748 480 - 181584905 CTGTCTTCCCAGAGGCTGTGGCCCTGAGAAAGATCACGTCTACCTGCAGCTGCACCACCTGCCTCCGGAGCAGCTGGCCACGCGCCTGCCCGGCATTTCAGAGACAGCCATGATCTTCGCTGGTGTGGACGTCACGAAGGAGCCGATCCCTGTCCTCCCCACCGTGCATTATAACATGGGCGGCATTCCCACCAACTACAAGGGGCAGGTGATGGTGCTGGCTGCCCTCCCGCAGCTGGATAGAAGGCTGGGACAACGGGGCCCACCTTGCAGTTGTCTCTTTAGATCGTAG-AGGAAAAGACAGATGTTTTCTTCAAGAAAGTTCTGTCTTGTTTTCTAGATTGTACTTTAAATTTCTATTACTG-GAGGATGG---------AG-GGGGCT-----------------------------TAATA---------------------ATTTATTCCTCCTTAGTAAATTGTCA-------TAGATGCA---TCATTTGCAGCCTTTTTTCCATTTTATAG-TTACTTTCCTATATGATCTCGTGTTATTTCT
i macFas5.chr6                 I 4 C 0
s papAnu2.chr6                 173161422 478 - 174439528 CTGTCTTCCCAGAGGCTGTGGCCCTGAGAAAGATCACGTCTACCTGCAGCTGCACCACctgcctccggagcagctggccACGCGCCTGCCCGGCATTTCAGAGACAGCCATGATCTTCGCCGGTGTGGACGTCACGAAGGAGCCGATCCCTGTCCTCCCCACCGTGCATTATAACATGGGCGGCATTCCCACCAACTACAAGGGGCAGGTGATGGTGCTGGCTGCCCTCCCACAGCTGGATAGAAGGCTGGGACAACGGGGCCCACCTTGCAGTTGTCTCtttagatcttag-aggaaaagacAGATGTTTTCTTCAAGAAAGTTCTGTCTTGTTTTCTAGATTGTACTTTAAATTTCTATTACTG-GAGGATGG---------AG-GGATCT-----------------------------TAATA---------------------ATTTATTCCTCCTTAGTAAATTGTCA-------TAGATACA---TCATTTGcag--ttttttccattttataa-ttacTTTCCTATATGATCTTGTGTTATTTCT
i papAnu2.chr6                 I 4 C 0
s chlSab2.chr4                  89607853 471 -  91010382 CTGTCTTCCCAGAGGCTGTGGCCCTGAGAAAGATCACGTCTACCTGCAGCTGCACCACCTGCCTCCGGAGCAGCTGGCCATGCGCCTGCCCGGCATTTCAGAGACAGCCATGATCTTCGCTGATGTGGACGTCACGAAGGAGCCGATCCCTGTCCTCCCCACCGTGCATTATAACATGGGCGGCATTCCCACCAACTACAAGGGGCAGGTGATGGTGCTGGCTCCCCTCCCGCAGCTGGATAGAAGGCTGGGACAACGGGACCCACCTTGCAGTTTTCTCTTTAGATCTTAG-AGGAAAAGACAGATGTTTTCTTCAAGAAAGTACTGTCTTGTTTTCTAGATTGTATTTTAAATTTCTATTACTG-GAGGATGG---------AG-GGGGCT-----------------------------TAATA---------------------ATTTATTCCTCCATAGTAAATTGTCA-------CAGATACG---TCATTTGCAG--CTTTTTCCATTTTATAA-TTACTTTCCTATATGATCTCGTGT-------
i chlSab2.chr4                 I 232 C 0
s calJac3.chr2                    152152 473 - 204313951 CTGTCTTGCCAGAGGCTGTGGCCCTGAGAAAGATCACGTCTACCTGCAGCTGCACCACCTGCCTCCAGAGCAGCTGGCCACGCGCCTCCCTGGCATTTCGGAGACAGCCATGATCTTTGCTGGCGTGGACGTCACGAAGGAGCCGATCCCTGTGCTCCCCACTGTGCATTATAACATGGGCGGCATTCCCACCAACTACAAGGGACAGGTGATGGTGCCAGGTCCTCTCCCACAGCTGGAAAGAAGGCCGGGACCGTGGGGCCCACCTTGCAGTTGTCTCTTTAGATCTTAG-AGGAAAAGACAGAGATTTTCTTCCAGAAAGTACTGTGTTGTTTCATAGATTGCACTTTAAATTT-----ACCA-GAGGATGG---------AC-GGAGGT-----------------------------TAATA---------------------ATTTATTCCTCCTTAGTAGGTTGTCA-------TGGATACA---TCATTTGCAG--CTTTCTCCATTTTATAA-GTACGTTCCTGAATGATGATGTGTTATTTAT
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46089334 435 - 120421639 -TGTATTTGCAGAGGCTGTGGCCCTGAGAAAGATCACGTCTACCTGCAGTTGCATCATCTGCCTCCTGAGCAACTGGCCACACGTCTACCCGGAATTTCAGAGACGGCCATGATCTTCGCTGGTGTGGATGTCACTAAGGAGCCCATCCCAGTCCTCCCCACTGTGCATTACAACATGGGTGGGATTCCCACTAACTACAAGGGACAGGTGATGGTG------------------------ACAAGGCT---------------ACTTGACAAAAATCCCTTTAGTGCTTAG-AGAATGCAGTGCATTT---------GATAGTGTAATGGTAGTTATCAAAT---GCTATACCTGCCAGGCAGTGAGAGGCTAGGTTATGTTTTG-GGGTTT-----------------------------CATTT---------------------ACTTGGTAATAACCAATAGAATGTTAATTCCCTTATACCTA---TAATACTAAGCACTGTTACCATTTTACAT-TTGATTTTCTATATTATTTAC----------
i mm10.chr13                   C 0 C 0
s canFam3.chr34                 30174522 526 -  42124431 CTTTTCCACCAGAGGCTGTGGCCCCGAAAAAGACCATGTGTACCTGCAGTTGCACCACCTACCGCCCGAGCAGTTGGCCATACGTCTGCCTGGCATTTCAGAGACGGCCATGATCTTTGCCGGTGTGGATGTCACCAAGGAGCCAATCCCCGTCCTTCCCACTGTGCATTATAACATGGGTGGCATTCCCACCAACTACAAGGGGCAGGTGACCAAGCCCAG-ACCCTTCCATGGTGGGGAATAGGGCAGGAATGATGAG-CCCATCTCACAGTTGTCCCTTGCGAGCTCAGTTAGTGAAGACAGATGGTTTCCTC-AGAAAGCACTGTGTTGTGTTGGCAACT--CCCTTGAGTTGCT---GCTG-GAGGGCAA---------AGCGGGGCTCGGGTATATTCCAGGGTTCACATTCACTCTAATAGCGAGCAGTCACTGGTCACTTACTGATCCCTCCATGGTACATAGTCG-------TGGATGCAATGTCATTTGCAG--CTTTTCCCTGTTTAGGATTTATTTTCCTTTATGATCTCTTGTTACTTTT
i canFam3.chr34                C 0 C 0
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=12326.000000
s hg38.chr3_KI270935v1_alt         43447 35 +    197351 AATGAGCTTATACATCAAGGGATCTTTATAATTCC
s panTro4.chr3_GL389630_random      7861 35 +    103936 AATGATCTTATACATCAAGGGATCTTTATAATTCC
i panTro4.chr3_GL389630_random C 0 C 0
s macFas5.chr6                 180274228 35 - 181584905 AATGATCTTGTACATCGAGGGATCTTTCTAATTCC
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173161900 35 - 174439528 AATGATCTTGTACATCAAGGGATCTTTCTAATTCC
i papAnu2.chr6                 C 0 C 0
s calJac3.chr2                    152625 19 - 204313951 AATGATTTTCTACATCGAG----------------
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46089769 15 - 120421639 AGTGAACTTATAAAT--------------------
i mm10.chr13                   C 0 C 0
s canFam3.chr34                 30175048  4 -  42124431 ACTG-------------------------------
i canFam3.chr34                C 0 C 0
e rheMac3.chr6                      8600 302 + 180491593 I
e chlSab2.chr4                  89608324  0 -  91010382 C
e ponAbe2.chr3                 199689891  0 + 202140232 C
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=270058.000000
s hg38.chr3_KI270935v1_alt         43482 142 +    197351 TATTTCTAATGATCTTGTACATCGAAGGATCTTTATAATTCATACCTGTGAGTGGTTTGCGGTTCACACAGAGCTTGTCAGTCACTTAGCCTCCTTG--------TTGGGCGAGGTGGGTGGAAGCTGTTACTTTCCCCGCATAGATGAA
s panTro4.chr3_GL389630_random      7896 142 +    103936 TATTTCTAATGATCTTGTACATCGAGGGATCTTTATAATTCATACCTTTGAGTGGTTTGTGGTTCACACAGAGCTTGTCAGTCACTTAGCCTCCTTG--------TTGGGCGAGGTGGGTGGAAGCTGTTACTTTCCCTGCGTAGATGAA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199689891 142 + 202140232 TATTTCTAATGATCTTGTACATCGAGGGATCTTTATAATTCACTCCTTTGAGTGGTTTGCGGTTCACACAGAGCTTGTCAGTCACTTAGCCTCCTTG--------TTGGGTGAGGTGGGTGGAAGCCGCTACTTTCCCTGCGTAGATGAA
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr6                      8902 142 + 180491593 TATTTCTAATGATCTTGTACGTCGAGGGATCTTTCTAATTCCTACCTTTGAGTAGTTTGCGGTTCACACAGAGCTTGTCAGTCACTTAGGCTCCTTG--------TTGGGCAAGGTGGGCGGCAGCTGTTACTTTCCCTGCATAGATGAA
i rheMac3.chr6                 I 302 C 0
s macFas5.chr6                 180274263 100 - 181584905 ------------------------------------------TACCTTTGAGTGGTTTGCGGTTCACACAGAGCTTGTCAGTCACTTAGGCTCCTTG--------TTGGGCAAGGTGGGCGGCAGCTGTTACTTTCCCTGCATAGATGAA
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173161935  99 - 174439528 ------------------------------------------TACCTTTGAGTGGTTTGCGGTTTACACAGAGCTTGTCAGTCACTTAGGCTACTTG--------TTGGG-GAGGTGGGCAGCAACTGTTACTTTCCCTGCGTAGATGAA
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89608324 142 -  91010382 TATTTCTAATGATCTTGTACATCGAGGGATCTTTCTAATTCCTACCTTTGAGTTGTTTGCGGTTCACACAGAGCTTGTCAGTCACTTAGGCTACTTG--------TTGGGCGAGGTGGGCGGCAGCTGTTACTTTCCCTGCGTAGATGAA
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    152644 116 - 204313951 --------------------------GGATCTTTATAATTCGTACCTTTGAGTGGTCTGCAGTTCACATAGAGCTTGTTGGTCGCTTAGGCTCCTTG--------TCGGGTGAGGTGGGTGGAAGCTGTTACTCTCCCTGCGTAGATGAA
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46089784 105 - 120421639 ------TAGTGA---------------------TATAATTGGTAC--TTGAGTTATAAGCAGTTTACA-AGTGCTTATCAG---CTGGTCCTTCTGG--------TTTGGACTCCTGGTCAGCA-CCACTAC-CCCCCTTCACAGATG--
i mm10.chr13                   C 0 C 0
s canFam3.chr34                 30175052 138 -  42124431 ---------TGACCTTTTAAATTGTGTGCTCTTTATAACCAATACTTTGGAGTGGTTTGTAGTCCACCCAGAGCCTTTTGGTT-CTTGACTTTTTTGGCCTTTCCTCAGGCAAGTGGCTGGGGATCTACTCC--TCCCTTTATAGATGAA
i canFam3.chr34                C 0 I 191
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=283169.000000
s hg38.chr3_KI270935v1_alt         43624 121 +    197351 GAGGTGAACAGGGGGTAGAAGAGTCTGGAACATCAGTCTCCCCTGCTGATGTTCCTCCACCTGCCGTGCTCCTGGGTCTGAGCTGGAGCACAGGT-GGTGAGGG----CCTCGGGAACATGGGACA
s panTro4.chr3_GL389630_random      8038 121 +    103936 GAGGTGAACAGGGGGTAGAAGAGTCTGGAACATCAGTCTCCCCTGCTGATGTTCCTCCACCTGCCGTGCTCCTGGGTCTGAGCTGGAGCACAGGT-GGTGAGGG----CCTCGGGAACATGGGACA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199690033 121 + 202140232 GAGGTGAACAGGGGGTAGAAGAGTCTGGAACATCAGTCTCCCCTGCTGATGTTCCTCCACCTGCCGTGCTCCTGGGTCTGAGCCGGAGCACAGGT-GGTGAGGG----CCTTGGGAACATGGGACA
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr6                      9044 121 + 180491593 GAGGTGAACAGGGGGTAGAAGAGTCTGGAACATCAGTGTCACCTGCTGATGTTCCTCCACCTGCCGTGCTCCCGGGTCTGAGCCAGAGTGCAGGT-GGTGAGGG----CCTCGGGAACATGGGACA
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180274363 121 - 181584905 GAGGTGAACAGGGGGTAGAAGAGTCTGGAACATCAGTGTCACCTGCTGATGTTCCTCCACCTGCCGTGCTCCCGGGTCTGAGCCGGAGTGCAGGT-GGTGAGGG----CCTCGGGAACATGGGACA
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173162034 121 - 174439528 GAGGTGAACGGGGGGTAGAAGAGTCTGGAACATCAGTGTCACCTACTGATGTTCCTCCACCTGCCGTGCTCCCGGGTCTGAGCCGGAGTGCAGGT-GGTGAGGG----CCTCGGGAACATGAGACA
i papAnu2.chr6                 C 0 I 507
s chlSab2.chr4                  89608466 121 -  91010382 GAGGTGAACGGGGGGTAGAAGAGTCTGGAACATCAGTGTCACCTACTGATGTTCCTCCACCTGCCGTGCTCCCAGGTCTGAGCTGGAGCGCAAGT-GGTCAGGG----CCTCGGGAACATGGGACA
i chlSab2.chr4                 C 0 I 369
s calJac3.chr2                    152760 121 - 204313951 TAGATGAACAGGGAGTAGAAGAGTCTGAAACATCAGTCTC-CCTGCTGATGTTCCTCCACCTGCTGTGCTCTCGGGTCTGAGCCAGATCACAGGTAGGAGAGGT----CCTTGGGGACATAGGACA
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46089889  92 - 120421639 ----------------------GTCCTGTTCTCC---TCCTCCCTTTAGTGTTCCATCACCTGTCATATTCCTTAGTTAAAT--------CAGGT-GGTGACTGACACTCTGGGAAACCTAAACCA
i mm10.chr13                   C 0 C 0
e canFam3.chr34                 30175190 191 -  42124431 I
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=170593.000000
s hg38.chr3_KI270935v1_alt         43745 85 +    197351 CGGGGGACAGTCGCAGATGCTGACATTGGAGGCCCTCTGACCTGCTTGT----AACAGC-AGGTGCTCAGGGGCAGAGGGGAAACTGGGG
s panTro4.chr3_GL389630_random      8159 85 +    103936 CGGGGGACAGTCGCAGATGCTGACATTGGAGGTCCTCTGACCTGCTTGT----AACAGC-AGGTGCTCAGGGGCAGAGGGGAAACTGGGG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199690154 85 + 202140232 CGGGGGACAGTCGCAGATGCTGACATTGGAGGTCCTCTGACCTGCTTGT----AACAGC-AGGTGCTCAGGGGCAGAGGGGAAACTGGGG
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr6                      9165 83 + 180491593 -CAGGGACAGTCGCAGACGCTGACATTAGGGGTCCTCTGACCTGCTTGT----AACAGCAAGGTGCTC-AGGGCAGA-GGGAAATGGGGG
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180274484 82 - 181584905 -CAGGGACAGTCGCAGACGCTGACATTAGGGGTCCTCTGACCTGCTTGT----AACAGC-AGGTGCTC-AGGGCAGA-GGGAAATGGGGG
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173162662 83 - 174439528 CTGGGGACAGTCGCAGATGCTGACATTGCGGGTCCTCTGATCTACTGGT----CACAGC-AGGTGCTC-GGGGCAGA-GGGAAACGGGGG
i papAnu2.chr6                 I 507 C 0
s chlSab2.chr4                  89608956 82 -  91010382 CTGGAGACAGTCGCAGATGCCGACATT-GGGGTCCTCTGATACACTGGT----CACAGC-AGGTGCTC-GGGGCAGG-GGGAAACGGGGG
i chlSab2.chr4                 I 369 C 0
s calJac3.chr2                    152881 83 - 204313951 CGGAGGACAGTCACAGATGCTGACATTGGAAGTCCTCTGACCTGCTTGT----AACAGC-AGGTACTC--GGGCAGAGAGGAAACTGGGG
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46089981 57 - 120421639 --------------------------------TCCTTTGACCTGTTGGTAGCAAACAGC-AAGAGTTTTGGAGCAAAAGGAGAACTGGGG
i mm10.chr13                   C 0 I 35
e canFam3.chr34                 30175190 191 -  42124431 I
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=389916.000000
s hg38.chr3_KI270935v1_alt         43830 186 +    197351 TATACATTCGGAAGTTTCCTTCTGAAGAAGAGTAGCTATGGTCCTTACTTCCTTCTTAGATATGGTCTTTACTTCCCtctcttt-gtttcttggagatggagactcgctc--tgtcgcttaggctggagtgcaatggcgcgatctcggctcactgcaacctccgcctcccaggttcaagcgattcttct
s panTro4.chr3_GL389630_random      8244 188 +    103936 GATACATTCGGAAGTTTCCCTCTGAAGAAGAGTAGCTATGGTCCTTACTTCCTTCTTAGATATGGTCTTTACTTCCCTCTCttt-gtttcttggagatggagactcgctctgtgtcgcttaggctggagtgcaatggcacgatctcggctcactgcaacctccgcctcccaggttcaagcgattcttct
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199690239 186 + 202140232 GATACATTTGGAAGTTTTCCTCTGAAGAAGAGTAGCTATGGTCCTTACTTCCTTCTTAGATATGGTCTTTACTTCCCCCTCttt-gtttcttggacatggagactcgctc--tgtcgcttaggctggagtgcagtggtgcaatatcagctcactgcaacctccgcctcccaggttcaagtgattcttct
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr6                      9248 180 + 180491593 G--ACATTCGGAAGCTTCCCTCTGAAGAAGAGGAGCTATGGTCcttacctccctcttagatgtggtctttccttcc----cttt-ttgtcttggagattcagtctcgctc--tgtcgcttaggctggagtacaatggcgcaatctcggctcacttcaacctccgcctcccaggttcaagcgattcttct
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180274566 180 - 181584905 G--ACATTCGGAAGCTTCCCTCTGAAGAAGAGGAGCTATGGTCCTTACCTCCCTCTTAGATATGGTCTTTCCTTCC----Cttt-ttttcttggagattcagtctcgctc--tgtcgcttaggctggagcacaatggcgcaatctcggctcactgcaacctccgcctcccaggttcaagcgattcttct
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173162745 182 - 174439528 G--ACATTCGGAAGCTTCCCTCTGAAGAAGAGGAGCTAtggtccttccctccctcttagATATggtctttccttcc--ctcttt-ttttcttggagattcagtctcgctc--tgtcgcttaggctgtagtgcagtggcgcaatctcggctcactgcaacctccgccttccagattcaagcgattcttct
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89609038 182 -  91010382 G--ACATTCGGAAGCTTCCCTCTGAAGAAGAGGAGCTATGGTCCTTACCTCCCTCTTAGATATGGTCTTTCCTTCC--CTCttt-ttttcttggagattcagtctcgctc--tgtcgcttaggctggagtgcagtggcgcaatcttggctcactgcaacctccgccttccaggttcaagcgattcttct
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    152964 186 - 204313951 CATACATTTGGAAGTTTCCCTCTGAAGAAGAGTAGCTCTGGTCCTTACTTCCCTCTTAGATGTGGTCTTTACTTCCCtctctttatttttttggagatggagtctcactc--tgtcgcccagactggagtgcaatgacgcaatctcagctgattgcaacctccgcctccta-attcaaatgattcttcc
i calJac3.chr2                 C 0 C 0
e mm10.chr13                    46090038  35 - 120421639 I
e canFam3.chr34                 30175190 191 -  42124431 I
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=237544.000000
s hg38.chr3_KI270935v1_alt         44016 133 +    197351 gcctcagcctcccgagtagctgggattacaggcacctgccatcatgcctggctaatttttatatttttagttgagacggggtttcaccatgttagccagacaggtctcgaacccctgaactcaggtgatccac
s ponAbe2.chr3                 199690425 133 + 202140232 gcctcagcctcccgagtagctgggattacaggcacccgccatcatgcctgggtaatttttgtatttttagttgagacggggtttcaccatgttagccagacaggtcttgaacccctgaactcaggtgatccac
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr6                      9428 133 + 180491593 gcctcagcctcccgagtagctgggattataggcactcgccgtcatgcctcactaatttttgtatttttagttgagacggggtttcaccatgttagccaggcaggtctcgaacccctgacctcaggtgatccac
i rheMac3.chr6                 C 0 T 9544
s macFas5.chr6                 180274746 133 - 181584905 gcctcagcctcccgagtagctgggattataggcactcgccgtcatgcctcactaatttttgtatttttagttgagacggggtttcaccatgttagccaggcaggtctcgaacccctgacctcaggtgatccac
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173162927 133 - 174439528 gcctcagcctcccgagtagctgggattacaggcactcgccatcatgcctggctaatttttgtatttttagttgagacggggtttcaccatgttagccagacagatctcgaacccctgacctcaggtgatccac
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89609220 133 -  91010382 gcctcagcctcccgagtagctgggattacaggcactcgccatcatgcctggctaatttttgtatttttagttgagacggggtttcaccatgatagccagacaggtctcgaacccctgacctcaggtgatccac
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    153150 132 - 204313951 acctcagcctcccgggtagctgggattacaggcacccaccatcatgcttggctaatttttgcacttttagtaaagacagggtttcaccat-ttagccaggctggtcttgaacccctgatctcaggtgatccac
i calJac3.chr2                 C 0 C 0
e mm10.chr13                    46090038  35 - 120421639 I
e canFam3.chr34                 30175190 191 -  42124431 I
e nomLeu3.chr11                120785647 3854 + 123690457 I
e panTro4.chr3_GL389630_random      8432   0 +    103936 C

a score=2345.000000
s hg38.chr3_KI270935v1_alt         44149 2 +    197351 cc
s ponAbe2.chr3                 199690558 2 + 202140232 cc
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180274879 2 - 181584905 cc
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173163060 2 - 174439528 cc
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89609353 2 -  91010382 cc
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    153282 2 - 204313951 tc
i calJac3.chr2                 C 0 C 0
e rheMac3.chr6                      9561 9544 + 180491593 T
e mm10.chr13                    46090038 35 - 120421639 I
e canFam3.chr34                 30175190 191 -  42124431 I
e nomLeu3.chr11                120785647 3854 + 123690457 I
e panTro4.chr3_GL389630_random      8432 0 +    103936 C

a score=59760.000000
s hg38.chr3_KI270935v1_alt         44151 35 +    197351 gcctcagcctcccaaagtgctgggattacaagcgt
s panTro4.chr3_GL389630_random      8432 35 +    103936 gcctcagcctcccaaagtgctgggattacaagcat
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199690560 35 + 202140232 acctcagcctcccaaagtgctgggattacaggcgt
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180274881 35 - 181584905 gcctcaacctcccaaagtgctgggattacaggcgt
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173163062 35 - 174439528 gcctcaacctcccaaagtgctgggattacaggcgt
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89609355 35 -  91010382 gcctcaacctcccaaagtgctgggattataggcgt
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    153284 34 - 204313951 acctcagccttccaaagtgtt-ggattacaggcat
i calJac3.chr2                 C 0 C 0
e rheMac3.chr6                      9561 9544 + 180491593 T
e mm10.chr13                    46090038 35 - 120421639 I
e canFam3.chr34                 30175190 191 -  42124431 I
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=19425.000000
s hg38.chr3_KI270935v1_alt         44186 18 +    197351 gagccactgcatgcccga
s panTro4.chr3_GL389630_random      8467 18 +    103936 gagccactgcatgcccga
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199690595 18 + 202140232 gagtcactgcatgcccgg
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180274916 16 - 181584905 gagccaccgc--gcctgg
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173163097 16 - 174439528 gagccaccgc--gcctgg
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89609390 16 -  91010382 gagccaccgc--gcctgg
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    153318 15 - 204313951 gagcca-tgc--gcccag
i calJac3.chr2                 C 0 C 0
s canFam3.chr34                 30175381 18 -  42124431 GATCCAGTCCTTACCTGC
i canFam3.chr34                I 191 C 0
e rheMac3.chr6                      9561 9544 + 180491593 T
e mm10.chr13                    46090038 35 - 120421639 I
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=21314.000000
s hg38.chr3_KI270935v1_alt         44204  9 +    197351 ccTAC--TTCC
s panTro4.chr3_GL389630_random      8485  9 +    103936 cCTAC--TTCC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199690613  9 + 202140232 ccTAC--TTCC
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr6                        17  9 + 180491593 CCTAC--TTCC
i rheMac3.chr6                 T 9544 C 0
s macFas5.chr6                 180274932  9 - 181584905 ccTAC--TTCC
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173163113  9 - 174439528 cctac--ttcc
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89609406 11 -  91010382 ccTACCTCTCT
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    153333  9 - 204313951 ccTGC--TTCC
i calJac3.chr2                 C 0 C 0
s canFam3.chr34                 30175399  9 -  42124431 CCTCC--ATCC
i canFam3.chr34                C 0 C 0
e mm10.chr13                    46090038 35 - 120421639 I
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=1025358.000000
s hg38.chr3_KI270935v1_alt         44213 334 +    197351 CTCTCTTTCTCTGACCTGCAGCACAGACACCCTGTTGAGGGAGGTGGGCTTGTGGAGGAATGGGCATCTTGACATTTCACCTGAAATCTTCCTTTCCACAGGTCCTGAGGCACGGGAATGGCCAGGATCAGATTGTGCCCAGCCTGTACGCCTGTGGGGAGGCCGCCTGTGCCTCTGCACATGGTGTCAACCGCCTCGGGGCAAACTCGCTGTTGGACCTGGTTGTC--TGGTCAGGCATGTGCCCTGAGCATCGCAGAGTCGTGCAGGCCTGGTAAGTGTTTTCTT-CAGG-ACCCAGACTATTTGAGAAGGCGCAGGAGGTT------------AGtcttttttc-ttt
s panTro4.chr3_GL389630_random      8494 334 +    103936 CTCTCTTTCTCTGACCTGCAGCACAGACACCCTGTTGAGGGAGGTGGGCTTGTGGAGGAATGGGCATCTTGACATTTCACCTGAAATCTTCCTTTCCACAGGTCCTGAGGCACGGGAATGGCCAGGATCAGATTGTGCCCGGCCTGTACGCCTGTGGGGAGGCCGCCTGTGCCTTGGCACATGGTGTCAACCGCCTCGGGGCAAACTCGCTGTTGGACCTGGTTGTC--TGGTCAGGCATGTGCCCTGAGCATCGCAGAGTCGTGCAGGCCTGGTAAGTGTTTTCTT-CAGG-ACCCAGACTATTTGAGAAGGCACAGGAGGTT------------AGTCttttttc-ttt
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199690622 335 + 202140232 CTCTCTTTCTCTGACCTGCAGCACAGACACCCCGTTGAGGGAGGTGGGCTTGTGGAGGAATAGGCACCTTGACATTTCATCTGAAATCTTCCTTTCCACAGGTCCTGAGGCACGCGAATGGCCAGGATCAGATTGTGCCCGGCCTGTACACCTGTGGGGAGGCTGCCTGTGCCTCGGTACATGGTGCCAACCGCCTCGGGGCAAACTCACTGTTGGACCTGGTTGTC--TGGTCAGGCATGCACCCTGAGTATCGAAGAGTCATGCAGATCTAGTAAGTGTTTTCTT-CAGG-AGCCAGACTATTTGAGAAGGCGCAGGAGGTTAC----------AGTCttttttc--tt
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr6                        26 337 + 180491593 CTTTCTTTCTCTGGTCTGCAGCACAGACACCCTGTTGGGGGAGGTGGGCTGGTGGAGGTATGGGCACCTTGACATTTCACCTGAAATCTTCCTTTCCACAGGTCCTGAGGCACGTGAATGGCCAGGATCAGATTGTGCCCGGGCTGTACGCCTGTGGGGAGGCCGCCTGTGCCTCGGTACATGGTGCCAACCGGCTCGGGGCAAACTCCCTCTTGGACCTGGTCGTCTTTGGTCGGGCATGTGCCCTGAGCATCGAAGAGTCGTGCAGGCCTGGTAAGTGTTTTCTT-CAGG-AGCCAGACTGTTCGAGAAGGCGCAGGAGGTTAC----------AGTCGTTTTTC--CT
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180274941 337 - 181584905 CTCTCTTTCTCTGGTCTGCAGCACAGACACCCTGCTGGGGGAGGTGGGCTGGTGGAGGTATGGGCACCTTGACATTTCACCTGAAATCTTCCTTTCCACAGGTCCTGAGGCACGTGAATGGCCAGGATCAGATTGTGCCCGGGCTGTACGCCTGTGGGGAGGCCGCCTGTGCCTCGGTACATGGTGCCAACCGGCTCGGGGCAAACTCCCTCTTGGACCTGGTCGTCTTTGGTCGGGCATGTGCCCTGAGCATCGAAGAGTCGTGCAGGCCTGGTAAGTGTTTTCTT-CAGG-AGCCAGACTGTCTGAGAAGGCGCAGGAGGTTAC----------AGTCGtttttc--ct
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173163122 337 - 174439528 ctctctttctctggtCTGCAGCACAGACACCCTGTTGGGGGAGGTGGGCTGGTGGAGGTATGGGCACCTTGACATTTCACCTGAAATCTTCCTTTCCACAGGTCCTGAGGCACGTGAATGGCCAGGATCAGATTGTGCCTGGGCTGTACGCCTGTGGGGAGGCCGCCTGTGCCTCGGTACATGGTGCCAACCGGCTCGGGGCAAACTCGCTCTTGGACCTGGTTGTCTTTGGTCGGGCATGTGCCCTGAGCATTGAAGAGTCATGCAGGCCTGGTAAGTGTTTTCTT-CAGG-AGCCAGACTGTTCGAGAAGGCTCAGGAGGTTAC----------AGtcgttttta--ct
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89609417 337 -  91010382 CTCTCTTTCTCTGGTCTGCAGCACAGACACCCTGTTGGGGGAGGTGGGCTGGTGGAGGTATGGGCACCTTGACATTTCACCTGAAATCTTCCTTTCCACAGGTCCTGAGGCACGTGAATGGCCAGGATCAGATTGTGCCCGGGCTATACGCCTGTGGGGAGGCCGCCTGTGCCTCGGTACATGGTGCCAACCGGCTCGGGGCAAACTCGCTCTTGGACCTGGTTGTCTTTGGTCGGGCATGTGCCCTGAGCATCGAAGAGTCATGCAGGCCTGGTAAGTGTTTCCTT-CAGG-AGCCAGACTGTCTGAGAAGGCGCAGGAGGTTAC----------AGttgtttttc--ct
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    153342 343 - 204313951 CTCTCTTTCTCTGACCTGCAGCACAGATACCCTGTTGGGGGAGGTGGGCTTGTGGAGGCATGGGCACCTTGAC-CTTCACCTGAAATCT---TTTCCACAGGTCCTGAGGCACGTGAATGGCCAGGATCAGATCGTGCCTGGCCTGTACGCCTGTGGGGAGGCCGCCTGCGCCTCAGTCCATGGTGCCAACCGTCTCGGGGCAAACTCGCTCTTGGACCTGGTTGTCTTTGGCCGGGCCTGTGCCCTGAGCATCGAAGAGTCATGCAGGCCTGGTGAGTGTTTTCTT-CAGA-AGCCAGACCATTTGAGAAGG--CAGGAGGTTACAAAGTTATGAAGtctttttttcttt
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46090073 326 - 120421639 CTTTACTTTTGCTACTTCAGGCATAGGAAGTCTGCC-AGGGAAGCAGGCATATGGACGCATAGGTATTTTGTTGCTTCATCTGAAATATTCCT----ACAGGTGCTGAAGCATGTGAATGGCCAGGATCAGATTGTGCCTGGTCTGTATGCCTGTGGGGAGGCTGCCTGCGCCTCAGTGCATGGTGCCAACCGGCTTGGAGCAAATTCTCTCTTGGACCTTGTAGTCTTTGGCAGAGCCTGTGCCCTGAGCATTGCAGAATCTTGCAGGCCTGGTATGTGTTCTCTTCCAGC-TCTCAAGCCATTC---------TAGGAGCCTGCAT--------AGTCTTTATTT--GT
i mm10.chr13                   I 35 I 814
s canFam3.chr34                 30175408 320 -  42124431 -------TCTCTGCCCCTGCATGCAGACATCCCCTGCTGGGAAGCAGACGGGTACAAAC-TGTGCTCCTAAAGTCTTCAC------TCTTCCT-CCTACAGGTTCTGAGGCACGTGAATGGCCAGGATCAGATTGTGCCTGGCCTGTATGCATGCGGGGAGGCCGCCTGCGCCTCGGTGCACGGTGCCAACCGCCTCGGAGCCAACTCGCTCTTGGACTTGGTCGTCTTTGGCCGGGCATGTGCCCTGAGTATCGCAGAGTCCTGCAGACCTGGTATGTGTTTTCTT-CAAGTAGCCAGGCTATTTCAGGAGG--TGAGAGGTTACCA--------TGTCTTGATT-----
i canFam3.chr34                C 0 C 0
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=33752.000000
s hg38.chr3_KI270935v1_alt         44547 17 +    197351 ttttttgagacagggtc
s panTro4.chr3_GL389630_random      8828 17 +    103936 ttttttgagacagggtc
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199690957 17 + 202140232 ttttttgagacagggtc
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr6                       363 16 + 180491593 TTTTTTGAGACA-GGTC
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180275278 16 - 181584905 ttttttgagaca-ggtc
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173163459 16 - 174439528 ttttttgagaca-ggtc
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89609754 16 -  91010382 ttttttgagaca-ggtc
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    153685 17 - 204313951 ttttttgagacagggtc
i calJac3.chr2                 C 0 C 0
s canFam3.chr34                 30175728 17 -  42124431 TGTAATTGGAAATTGCC
i canFam3.chr34                C 0 I 188
e mm10.chr13                    46090399 814 - 120421639 I
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=44842.000000
s hg38.chr3_KI270935v1_alt         44564 17 +    197351 agcccaggctggagtgc
s panTro4.chr3_GL389630_random      8845 17 +    103936 agcccaggctggagtgc
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199690974 17 + 202140232 agcccaggctggagtgc
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr6                       379 17 + 180491593 AGCCCAGGCTGGAGTGC
i rheMac3.chr6                 C 0 I 9651
s macFas5.chr6                 180275294 17 - 181584905 agcccaggctggagtgc
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173163475 17 - 174439528 agaccaggctggagtgc
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89609770 17 -  91010382 agcccaggctggagtgc
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    153702 17 - 204313951 agcccaggctggagtgc
i calJac3.chr2                 C 0 C 0
e mm10.chr13                    46090399 814 - 120421639 I
e canFam3.chr34                 30175745 188 -  42124431 I
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=206513.000000
s hg38.chr3_KI270935v1_alt         44581 125 +    197351 agtggcacagtcatagcagcctcaacctcccgagctcaagcagtcctcaacacctcaaccttcagagtcccaagtagctgggactacagatgtgcaccaccacacctggctaatttaaaaaaatt
s panTro4.chr3_GL389630_random      8862 125 +    103936 agtggcacagtcatagcagcctcaacctcccgagctcaagcagtcctcaacacctcaaccttcagagtcccaagtagctgggactacagatgtgcaccaccacacctggctaatttaaaaaaaat
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199690991 124 + 202140232 agtggcacagtcatcatagcctcaacctcccgaactcaagcagtcctcaacacctcaaccttcagagtcccaagtagctgagactacagatgtgcaccaccatacctggctaa-ttaaaaaaatt
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180275311 123 - 181584905 catggcacagtcatagccgcctcaacctcccgggctcgagcagtcctcaacacctccacctgcagagtcccaagtagctgggactacagatgtgcaccaccacacctggctaatttaaaaaaa--
i macFas5.chr6                 C 0 I 3
s papAnu2.chr6                 173163492 125 - 174439528 cgtggcatagTCAtagctgcctcaacctcccgggctcgaGCAGTCCTCAACACCTCCACCTGCagagtcccaagtagctgggactacagatgtgcaccaccacacctggctaatttaaaaaaatt
i papAnu2.chr6                 C 0 I 3
s chlSab2.chr4                  89609787 125 -  91010382 cgtggcacagtcatagccgcctcaacctcccaggctcgagcagtcctcaacacctccacctacagagtcccaagtagctgggactacagatgtgcaccaccacacctggctaatttaaaaaaatt
i chlSab2.chr4                 C 0 I 3
s calJac3.chr2                    153719 125 - 204313951 agtggcacagtcatggcagcctcagcctcctgggctcaagcagtccttaacaccccaaccttcagagtcccaagtagctggaactacaggtgtgcacccccacacctggctacttttttattttt
i calJac3.chr2                 C 0 C 0
e rheMac3.chr6                       396 9651 + 180491593 I
e mm10.chr13                    46090399 814 - 120421639 I
e canFam3.chr34                 30175745 188 -  42124431 I
e nomLeu3.chr11                120785647 3854 + 123690457 I

a score=214597.000000
s hg38.chr3_KI270935v1_alt         44706 92 +    197351 ttttttggtagagacagggtctcacaatattgcccaggctggtcttgaactcctagactcaaacagt-cttctgcctcagctttccaaagtat
s panTro4.chr3_GL389630_random      8987 92 +    103936 ttttttggtagagacagggtctcacaatattgcccaggctggtcttgaactcctagactcaaacagt-cttctgcctcagcttcccaaagtat
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199691115 93 + 202140232 tttttttgtagacacagggtctcacaatattgcccaggctggtcttaaactcctagactcaaacagtccttctgcctcagcttcccaaagtac
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120789501 93 + 123690457 tttttttgtagagacagggtctcacaatattgcccaggctggtcttgaactcctagactcaaacagtccttctgcctcagcttcccaaactat
i nomLeu3.chr11                I 3854 C 0
s macFas5.chr6                 180275437 93 - 181584905 tttttttgtagaaacagggtctcacaatattgcccaggctggtcttgaactcctagacccaagcagtccttctgcctcagcttcccaaagtac
i macFas5.chr6                 I 3 C 0
s papAnu2.chr6                 173163620 93 - 174439528 tttttttgtagagacagggtctcacaatattgcccaggctggtcttgaactcctagacccaagcagtccttctgcctcagcttcccaaagtac
i papAnu2.chr6                 I 3 C 0
s chlSab2.chr4                  89609915 93 -  91010382 ttttttgttagagacagggtctcacaatattgcccaggctggtcttgaactcctagacccaagcagtccttctgcctcagcttcccaaagtac
i chlSab2.chr4                 I 3 C 0
s calJac3.chr2                    153844 92 - 204313951 -ttttttgcagagacagggtctcacaatgttgcccaggctgatctggaactcctagactgaaacagtccttctctctcagcttcccagagtgt
i calJac3.chr2                 C 0 C 0
e rheMac3.chr6                       396 9651 + 180491593 I
e mm10.chr13                    46090399 814 - 120421639 I
e canFam3.chr34                 30175745 188 -  42124431 I

a score=326733.000000
s hg38.chr3_KI270935v1_alt         44798 107 +    197351 tgggattacaggcatgagccactgcacccagccAGGTTACAAAGCCTTGATTTCTTACTGGAAATTTGCGTAGTGAGCATATAGAGGTAGTCTGGGTTTTTTCCCCT
s panTro4.chr3_GL389630_random      9079 107 +    103936 tgggattacaggcatgagccactgcacccagccAGGTTACAAAGCCTTGATTTCTTACTGGAAATTTGCTTAGTGAGCATATAGAGGTAGTCTGGGTTTTTTCCCCT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199691208 107 + 202140232 tgggattacaggcatgagccactgcacccagccAGGTTACAAAGCCTTGATTTGTTGCTGGAAATTTGTTTAGTGATCATATAGAGGTAGTCTGGGTTTTTTCCCCT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120789594 106 + 123690457 tgggattacaggcatgagccactgcacccagccAGGTTACAAAGCCTTGATTTGTTACTGGAAATTGGCTTAGTGATCATATAGAGGTAGTCTGGGTTTTTTCCCC-
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     10047 107 + 180491593 tgggattacaggtgtgagccacggcacccagccAGGTTACAAAGCCTCGATTTGTTACTGGAAATTTGCTTAGTGGTCATATAGAGGTAGTCTGGGTTTTTTCCCCT
i rheMac3.chr6                 I 9651 C 0
s macFas5.chr6                 180275530 107 - 181584905 tgggattacagacatgagccacggcacccagccAGGTTACAAAGCCTCGATTTGTTACTGGAAATTTGCTTAGTGGTCATATAGAGGTAGTCTGGGTTTTTTCCCCT
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173163713 107 - 174439528 tgggattacagacatgagccacggcacccagccaggTTACAAAGCCTCGATTTGTTACTGGAAATTTGCTTAGTGGTCATATAGAGGTAGTCTGGGTTTTTTCCCCT
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89610008 107 -  91010382 tgggattacagacatgagccacggcacccagccAGGTTACAAAGCCTCGATTTGTTACTGGAAATTTGCTTAGTGGTCATATAGAGGTAGTCTGGGTTTTTTCCCCT
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    153936 107 - 204313951 tgggattacaggcatgagcccccacccccagccAGGTTACAAAGCCTTGATTTCTTCCTGGAAATTTGCTTAGTGATCATATAGTGGTCGTCTGGGTTTTTTCCCCT
i calJac3.chr2                 C 0 C 0
e mm10.chr13                    46090399 814 - 120421639 I
e canFam3.chr34                 30175745 188 -  42124431 I

a score=458130.000000
s hg38.chr3_KI270935v1_alt         44905 149 +    197351 AGAAGTGATTAAACTGAGAAATCCAGAGATTATATGGTGGTAATGTTGAGACTAGATAGAGGCTGGTTGGGGATCTTAACAGTTAAGGTGACATTTTTGGGGTTACATTTTTTTTTTTTAA--ATTATTTTGCAGTCATTATTTTCTGTTT
s panTro4.chr3_GL389630_random      9186 149 +    103936 AGAAGTGATTAAACTGAGAAATCCAGAGATTATATGGTGGTAATGTTGAGACTAGATAGAGGCTGGTTGGGGATCTTAACAGTTAAGGTGACATTTTTGGGGTTACATTTTTGTTTTTTTA--ATTATTTTGCAGTCATTATTTTCTGCTT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199691315 143 + 202140232 AGAAGTGATTAAACTGAGAAATCCAGAGATTATATGGTGGTAATGTTGAGACTAGATAGAGGCTGGTTGGGGATCTTAACAGTTAAGGTGACATTTTTGAGGTTAC---TTTTTTTTTAAA--ATTATTTTGCAGTC---ATTTTCTGCTT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120789700 148 + 123690457 AGAAGTGATTAAACTGAGAAATCCAGAGATTATATGGTGGCCATGTTGAGACTAGATAGAGGCTGGTTGGGGATCTTAACAGTTAAGGTGACATTTTTGGGGTTAC-TTTTTTTTTTTTTA--ATTATTTTGCGGTCATTATTTTCTGCTT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     10154 148 + 180491593 AGAAGTGATTAAACTGAGAAATCCGGAGGTTATATGGTGGTAATGTTGAGACTAGATAGAGGCTGGTTGGGGATCTTAACAGTTAAGGTGACATTTTTGGGGTTAC-atttttttttttta--attattttGTAGTCATTATGTTCTGCTT
i rheMac3.chr6                 C 0 I 317
s macFas5.chr6                 180275637 148 - 181584905 AGAAGTGATTAAACTGAGAAATCCGGAGGTTATATGGTGGTAATGTTGAGACTAGATAGAGGCTGGTTGGGGATCTTAACAGTTAAGGTGACATTTTTGGGGTTAC-TTTTTTTTTTTTTA--ATTATTTTGTAGTCATTATGTTCTGCTT
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173163820 147 - 174439528 AGAAGTGATTAAACTGAGAAATCCGGAGGTTATATGGTGGTAATGTTGAGACTAGATAGAGGCTGGTTGGGGATCTTAACAGTTAAGGTGACATTTTtggggttac--tttttttttttaa--attattttgtagtcATTATGTTCTGCTT
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89610115 147 -  91010382 AGAAGTGATTAAACTGAGAAATCCGGAGGTTATATGGTGGTAATGTTGAGACTAGATAGAGGCTGGTTGGGGATCTTAACAGTTAAGGTGACATTTTTGGGGTTAC--TTTTTTTTTTTAA--ATTATTTTGTAGTCATTATGTTCTGCTT
i chlSab2.chr4                 C 0 I 313
s calJac3.chr2                    154043 146 - 204313951 AGAAGTGATGATACTGAGAAATCTAGAGATTGTCTGGTGGTAATGTTGACACCAGATAGAGGCTGGTTGGGGATCTTAACTATTAAGGTGACATTTTTGGGGTTAC---ATTTTTAAAAAA--ATTATTTTGCAGTCATTATGTTCTGCTT
i calJac3.chr2                 C 0 C 0
s canFam3.chr34                 30175933 136 -  42124431 aaGAGAGAGAAAAGAAAGAGAT-------TTCTACAGTAATAGACTTGGGACTCGACACAGGCTAGGTGTGGGTCCTAACAGTTTATGTAG-------AGGGTAAC-CTAGTTTTGGTCAGGTATTGTTTTGCAGTTATTATGTTCTCCTT
i canFam3.chr34                I 188 C 0
e mm10.chr13                    46090399 814 - 120421639 I

a score=52671.000000
s hg38.chr3_KI270935v1_alt         45054 15 +    197351 AGAAAAAGCACTATT
s panTro4.chr3_GL389630_random      9335 15 +    103936 AGAAAAAGCACTATT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199691458 15 + 202140232 CGAAAAAGCACTATT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120789848 15 + 123690457 AGAAAAAGCACTATT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     10619 15 + 180491593 agaaaaaGCACTATT
i rheMac3.chr6                 I 317 C 0
s macFas5.chr6                 180275785 15 - 181584905 AGAAAACGCACTAAT
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173163967 15 - 174439528 AGAAAAAGCACTATT
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89610575 15 -  91010382 agaaaaaGCACTATT
i chlSab2.chr4                 I 313 C 0
s calJac3.chr2                    154189 15 - 204313951 AGAAAAAGCACTATT
i calJac3.chr2                 C 0 C 0
s canFam3.chr34                 30176069 15 -  42124431 AGAAAAGTCACTATG
i canFam3.chr34                C 0 C 0
e mm10.chr13                    46090399 814 - 120421639 I

a score=328004.000000
s hg38.chr3_KI270935v1_alt         45069 89 +    197351 AGGAAGCTGTTATTTTTAGGGGAAGTTCATTACGTATTACTTGCCTGATAAAAATCACTTATTTGCAATGAAATATTTAAAATAGTTGG
s panTro4.chr3_GL389630_random      9350 88 +    103936 AGGAAGCTGTTATTTTTAGGGGAAGTTCATTATGTATTACTTGCC-GATAAAAATCACTTATTTGCAATGAAATATTTAAAATAGTTGG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199691473 89 + 202140232 AGGAAGTTGTTATTTTTAGGGGAAGTTCGTTACCTATTACTTGCCTGATAAAAATCACTTATTTGCAATGAAATATTTAAAATAGTTGG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120789863 89 + 123690457 AGGAAGTTGTTATTTGTAGGGGAATTTCATTACATATTACTTGCCTGATAAAAATCACTTATTTGCAATGAAATATTTAAAATAGTTGG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     10634 89 + 180491593 AGGAAGTTGTTATTTTTAGGGGAAGTTCATTACATATTACTTGCCTGATAAAAATCACTTATTTGCAATGAAATTTTTTAAATAGTTGG
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180275800 89 - 181584905 AGGAAGTTGTTATTTTTAGGGGAAGTTCATTAAATATTACTTGCCTGATAAAAATCACTTATTTGCAATGAAATTTTTTAAATAGTTGT
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173163982 89 - 174439528 AGGAAGTTGTTATTTTTAGGGGAAGTTCATTACATATTACTTGCCtgataaaaataacttatttgcaatgaaattttttaaatagttgt
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89610590 89 -  91010382 AGGAAGTTGTTATTTTTAGGGGAAGTTCATTACATATTACTTGCCTGATAAAAATCACTTATTTGCAATGAAATTTTTTAAATAGTTGG
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    154204 89 - 204313951 AGGAAATTGCTATTTTTAGGGGAAGTTCATTACATGTTACTTGCTTGATAAAAAGCACTTGTTTGCAATGAAATATTTTAAGTAGTTGG
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46091213 81 - 120421639 aAGAAATTGGTATTTTGAGGGAAAGTTGATTACATATTATTTGTCTGTTATAAATTA--TGTTTGCAGTCCAATATT---AATAGT---
i mm10.chr13                   I 814 C 0
s canFam3.chr34                 30176084 84 -  42124431 -GGAA----TTGTTTTGAGGAGAAGTTTATCACACAGTGCTTGCTCAGTATAAATTATTTACTTGCTATGAAATATTTTAAAGAGTAGG
i canFam3.chr34                C 0 I 147

a score=677252.000000
s hg38.chr3_KI270935v1_alt         45158 223 +    197351 CATGAATGA-----------------------------------------ATATGTAACTTCTTGGTACTTA--GAAAAATAATTTAGGCCATTCTAAAAG-----TACAACTAACCTCTATTAGAGGAGAAGGGCTGACTTAGAGTGAACAGGATT---------CCCACCCTCTACGGACAGATTCGATTTCACTTGCTGGTTTTCTTTTCAGGATAGCGTCAAATAATGTGCAGGAAAAGGA-ATACCGTGTG-TGGGAGTGTGAGTCTTATGTGCACG
s panTro4.chr3_GL389630_random      9438 228 +    103936 CATGAATGA-----------------------------------------ATATGTAACTTCTTGGTACTTA--GAAAAATAATTTAGGCCATTCTAAAAACAAACTGTAGCTAACCTCTATTAGAGGAGAAGGGCTGACTTAGAGGGAACAGGATT---------CCCACCCTCTACGGACAGATTCAATTTCACTTGCTGGTTTTCTTTTCATGATAGCGTCAAATAATGTGCGGGAAAAGAA-ATACCGTGTG-TGGGAGTGTGAGTCTTACGTGCACG
i panTro4.chr3_GL389630_random C 0 I 217
s ponAbe2.chr3                 199691562 228 + 202140232 CATGAATGA-----------------------------------------ATATGTAACTTCTTGGTACTTA--GAAAAATAATTTAGGCCATTCTAAAAACAAAGTACAACTAACCTCTATTAGAGGAGAAGGGCTGACTTAGAGTGAACAGGATT---------CCCACCCTCTACGGACAGATTGGATTTCACTTGCTGGTTTTCTTTTCATGGTAGCGTCAAACAATGTGCAGGAAAAGAA-ATACCGTGTG-TGGGAGTGTGAGTCTTATGTGCACT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120789952 228 + 123690457 CATGAATGA-----------------------------------------ATATGTAACTTCTTGGTACTTA--GAAAAATAATTTAGGCCATTCTAAAAACAAAGTACAACTAACCTCTATTAGAGGAGAAGGGCTGACTTAGAGTGAACAGGATT---------CCCACCCTCTACGGACAGATTGGATTTCACTTGCTGGTTTTCTTTTCATGACAGTGTCAAATAACGTGCAGGAAAAGAA-ATACCACGTG-TGGGAGTGTGAGTCTTACGTGCACT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     10723 224 + 180491593 TGTGAATGA-----------------------------------------ATATGTAACAT----GTACTTA--GAAAAATAATTTAGGCCATTCTAAAAACAAAGTACAGCTAGCCTCTATTAGAGGAGAAGGGATGACTTACAGTGAACAGAATT---------CCCACTCTCTACGGACAGATTGGATTTCACTTGCTGGTTTTCTTTTCATGATAGCGTCAAATAATGTGTAGGAGAAGAA-ATACCATGTG-TGGGAGTGTGAGTCTCATGTGCACT
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180275889 225 - 181584905 CATGAACAA-----------------------------------------ATACGTAACTT---GGTACTTA--GAAAAATAATTTAGGCCATTCTAAAAACAAAGTACAGCTAGCCTCTATTAGAGGAGAAAGGATGACTTAGAGTGAACAGGATT---------CTCACTCTCTACGGACAGATTGGATTTCACTTGCTGGTTTTCTTTTCATGATAGCATCAAATAATGTGTAGGAGAAGAA-ATACCATGTG-TGGGAGTGTGAGTCTCATGTGCACT
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173164071 225 - 174439528 cATGAACAA-----------------------------------------ATGTGTAACTT---Ggtactta--gaaaaataatttaggccATTCTAAAAACAAAGTACAGCTAGCCTCTATTAGAGGAGAAAGGATGACTTACAGTGAACAGAATT---------CCCACTCTCTACGGACAGATTGGATTTCACTTGCTGGTTTTCTTTTCGTGATAGCATCAAATAATGTGTAGGAGAAGAA-ATACCACGTG-TGGGAGTGTGAGTCTCATGTGCACT
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89610679 214 -  91010382 TGTGAATGA-----------------------------------------ATATGTAACAT----------G--GAAAAATAATTTAGGCCATTCTAAAAACAAAGTACAGCTAGCCTCTATTAGAGGAGAAGGGATGACTTACAGTGAACAGGATT---------CCCA--CTCTACGGAC--ATTGGGTTTCACTTGCTGGTTTTCTTTTCATGATAGCGTCAAATAATGTGTAGGAGAAGAA-ATACCGTGTG-TGGGAGTGTGAGTCTCATGTGCACT
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    154293 224 - 204313951 CATGAATGA-----------------------------------------ATATGTAACTTCTTGGTACTTA--GAAAAATAATTTAGGCCCTTCTAAAAACAAAGTGCAACTAATCTC-ATTAGAAGAGAAGGGATGACTTAAAGCGAACCGGATT---------CTC---CCCTCCGGTGACAGTGGATTTCACTTGGTGGTTTTCTTTTCATGATAGCACAGAGTAGTGTGCAGGAGAAGAA-ATACCATGTG-CTGCAGTGTGGGTCTTACGTGCACT
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46091294 201 - 120421639 -AAAAATGA-----------------------------------------ATCTGTAACTTCTTGGTAATTG--TAGAAAAATTTTAGACTGTTTTAAAAACAAGATTTAG--AATTCCATTTATAAAAGAA----TGACATAG------------T---------CCTACCCCACAGGGATAGAAAGAATTTCAGTTGA-GGTTTTCTT---ATGGTAGCTTAAAAC----TGTAAAAGAAAAATGTACCTTGTG-TTGGAGTGT-AGTTTTGTTTGTACA
i mm10.chr13                   C 0 I 3
s canFam3.chr34                 30176315 270 -  42124431 catgaataaataaataaaatcttaaaaaaaaaAAAAAAGTAGGTGTGAATATATATAAGTTCTCAATATTTATGGAAAAGTAATTTAGG---TTCTTAAAA---AATATAAATAA--TCTGTTAAAGGAGAACATAATGCACACAAAACAGAGCATTGGGTCATAGCCCTCCCTTCCGTGATACAGTGGATTTCAGTCTGTGATTCTGTTCTTCTGGCAACTTAAAATAATTTGCTGAGGAAAAA-ACACTCTGTGCTGGAAGTGTGAATCCT-TCTGTA--
i canFam3.chr34                I 147 C 0

a score=1379623.000000
s hg38.chr3_KI270935v1_alt         45381 522 +    197351 AAGAACAGGACAGTTAGCATCGTTCCCA-CCTCCAGAGA-TCCTCACGGTGGTCATGCAGCCTCGTGTGCTCAGAA---CAGTGTG--AGGTG---------GATGAGGCACTGGTGGATGTTTGCGTGGCAAGGATGGTGGGACCCCAGGCCCACGTTCTTCCCGTTAGCTTTCTCTGGTGTTAACTGTTTAGCATCATTTCTGCTGTTTTTATAGAACAGGCGCTTTTTGCTTTTT------GTATGGACTCAAGTGA---AATAAAAACTAGCACCGCCGTACC--TTATA--------------AACATG------ACCCTTTTCTATCTGTAGTTAGAAAGGTACAGGCAGT-ATTA--AAAGGGTAGC-TAC---TTCAGACACTGTGTCTCTGTGGATCTGACGACAGCTCAGGAGGCCAGCACATGCAGAGCCGGCG--TCTCATCCCCAGCCGTTGCTGATCATCGGCGAAGGCGGAGTTCAGGTGCCTCGCTCCTGACGCCACAGGTTGTGCTTGTCTCACTCCATAGCCCTGCACTTTGTCGCAGTGAGGTCTGATACCACTTCTCT
s panTro4.chr3_GL389630_random      9883 522 +    103936 AAGAGCAGGACAGTTAGCATCGCTCCCA-CCTCCAGAGA-TCTTCACGGTGGTTATGCAGCCTCGTGTGCTCAGAA---CAGTGTG--AGGTG---------GATGAGGCACTGGTGGATGTTTGCGTGGCAAGGATGGTGGGACCCCAGGCCCACGTTCTTCCCGTTACCTTTCTCTGGTGTTAACTGTTTAGCATCATTTCTGCTGTTTTTATAGAACAGGCGCTTTTTGCTTTTT------GTATGGACTCAAGTGA---AATAAAAACTAGCACTGCCGAACC--TTATA--------------AACATG-----CACCCTTTTATATCTGTAGTTAGAAAGGTACAGGTAGT-ATTA--AAAGGGTAGC-TAC---TTCAGACACTCTGTCTCTGTGGATCTGACGACAGCTCAGGAGGCCAGCACATGCAGAGCTGGCG--TCTCATCCCAAGCCGTTGCTGATCATCGGCGAAGGCGGAGTTCAGGTGCATCATTCCTGACGCCACAGGTTGTGCTTGTCTCACTCCATAGCCCTGCACTTTG-AGCAGTGAGGTCTGATACCACTTCTAT
i panTro4.chr3_GL389630_random I 217 C 0
s ponAbe2.chr3                 199691790 523 + 202140232 AAGAACAGGACAGTTAGCATCACTCCCA-CCTCCAGAGA-GCTTCACGGTGGTTATCCAGCCTCGTGTGCTCAGAA---CAGTGTG--AGGTG---------GATGAGGCACTGGTGGATGTTTGTGTGGCAAGGATGGTGGGACCCCAGGCCCACGTTCTTCCCGTTACCTTTCTCTGGTGTTAACTGTTTAGCATCATTTCTGCCGTTTTTATAGAACAGGTGCTTTTTGCTTTTT------GTATGGACTCAAGTGA---AAGAAAAACTAGCACTGCTGTAAC--TTATA--------------AACATG-----CGCCCTTTTATATCTGTAGTTAGAAAGGTACAGATAGT-ATTA--AAAGGGTAGCTTAT---TTCAGACACTGTGTCTCTGTGGATCTGACCACAGCTCCGGAGGCCAGCACACGCAGAGCTGGTG--TCTTATCCCAAGCTGTTGCTGATCATCGGCGAAGGCGGAGTTCAGGTCCATCGTTCCTGACGCCACAGG-TGTGCTTGTCTCATTCCATAGCCCTGTACTTTGTAGCAGTGAGGACCGATACCACTTCTCT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120790180 530 + 123690457 AAGAACAGGACAGTTAGCATCACTCCCA-CCTCCAGAGA-TGTTCACGGTGGTTATCCAGCCTCCTGTGCTCAGAA---CAGTATG--AGGTG---------GATGAGGCACTGGTGGATGTTTGTGTGGCAAGGATGGTGGGACCCCAGGCCCACGTTCTTCCCGTTACGTTTCTCTGGTGTTAACTGTTTAGCATGATTTCTGCTGTTTTTATAGAACAGGTGCTTTTTGCTCTGTTGAAAAGAGCAAATAAAAGTGA---AATAAAAACTAGCACTGCCATAAC--TTATA--------------AACATG-----CGCCCTTTTATATCTGTAGTTAGAAAGGTACAGATAGT-ACTA--AAAGGGTAGCTTAC---TTCAGACACTCTGTCTCTGTGGATCTGACCACAGCCCAGGAGGCCAGCACACGCAGAGCTGGCG--TCTTATCCCAAGCCATTGCTGATCATGGGTGGAGGCGGAGTTCAGGTCCGTCGTTCTTGACGCCACAGGTTGTGCTTGTCTCATTCCATAGCCCTGCACTTTGTAGCAGTGAGGACTGATACCACTTCTCT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     10947 515 + 180491593 AAGAACAGGACAATTAGCATCACTCTCA-CCTCCAGAGA-TCTTCACGGTGGTTATCCAGCCTCATGTGCTCAGAA---CAGTGTG--AGGTG---------GATGAAACACCGGTGGATGTTTGTGTGGCAAGAATGGTGGGACCCCAGGCCCACATTCTTCCCGTTACCTTTCTCTGGTGTTAACTGTTTGGCATCATTTCTGCTGTTTTAATAGAACAGGTGCTTTTT-------------GTGTGGATTCAAGTGA---AATAAAAACTAGGACTGCTGTAAC--TTATA--------------AACATG-----CCCGCTTTTATATCTGTAGTTAGAAAGGTACGGAGAGT-ATTA--AAAAGGTAGCTTAC---TTCAGACACTCTGTCTC--TGGATCTGACCACAGCTCGGGAGGCCAGCACACGCAGAGCTGGCG--TCTTACCCCAAGTCACTGCTGACCATGGGCGAAGGCGGAGTTCAGGTCCATCGCTCCTGACGCCACAGGTTGTGCTTGTCTCACTCCATAGCCCTGCACTTTGTAGCAGTGAGGACTGATACCACTTCTCT
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180276114 514 - 181584905 AAGAACAGGACAATTAGCATCACTCTCA-CCTCCAGAGA-TCTTCACGGTAGTTATCCAGCCTCGTGTGCTCAGAA---CAGTGTG--AGGTG---------GATGGGGCACCGGTGGATGTTTGTGTGGCAAGGATGGTGGGACCCCAGGCCCACATTCTTCCCGTTACCTTTCTCTCATGTTAACTGTTTGGCATCATTTCTGCTGTGTTTATAGAACAGGTGGTTTTT-------------GTATGGATTCAAGTGA---AATAAAAGCTAGGACTGCCGTAAC--TTATA--------------AACATG-----CCCCCTTTTATATCTGTAGTTAGAAA-ATACAGAGAGT-ACTA--AAAGGGTAGCTTAC---TTCAGCCACTCTGTCTC--TGGATCTGACCACAGCTCGGGAGGCCAGCACATGCAGAGCTGGAG--TCTTACCCCAAGTCGCTGCTGATCATGGACGAAGGCGGAGTTCAGGTCCATCGTTCCTGATGCCACAGGTTGTGCTTGTCTCACTCCATAGCCCTGCACTTTGTAGCAGTGGGGACTGATACCACTTCTTT
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173164296 517 - 174439528 AAGAACGGGACAGTTAGCATCGCTCCCA-CCTCCAGAGA-TCTTCACGGTGGTTATCCAGCCTCGTGTGCTCAGAA---CAGTGTG--AGGTG---------GATGGGGCACCGGTGGATGTTTGTGTGGCAAGGATGGTGGGACCCCAGGCCCACATTCTTCCCGTTACCTTTCTCTGGTGTTAACTGTTTGGCATCCTTTCTGCTGTTTTAATAGAACAGGTGCTTTTT-------------GTGTGGattcaagtga---aataaaaactagGACTGCCGTAAC--TTATA--------------AACATG-----CCCCCTTTTATATCTGTAGTTAGAAAATGACAGAGAGT-ACTA--AAAGGGTAGCTTAC---TTCAGCCACTCTGTCTC--TGGATCTGACCACAGCTCGGGAGGGCAGCACACGCAGAGCTAGCGTCTCTTACCCCAAGTCGCTGCTGACCATGGGCGAAGGCGGAGTTCAGGTCCATCGCTCCTGACGCCACAGGTTGTGCTTGTCTCACTCCATAGCCCTGCACTTTGTAGCAGTGAGGACTGATACCACTTCTCT
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89610893 515 -  91010382 AAGAATGGGACAGTTAGCATCGCTCCCA-CCTCCAGAGA-TCTTCACGGTGGTTATCCAGCCTCGTGTGCTCAGAA---CAGTGTG--AGGTG---------GATGAAGCACCGGTGGATGTTTGTGTGGCAAGGATGGTGGGACCCCAGGCCCACATTCTTCCCGTTACCTTTCTCTGGTGTTAACTGTTTGGCATCATTTCTGCTGTGTTTATAGAACAGGTGGTTTTT-------------GTGTGGATTCAAGTGA---AATAAAAACTAGGACTGCCGTAAC--TTATA--------------AACATG-----CCCCCTTTTATATCTGTAGTTAGAAAATTACAGAGAGT-ACTA--AAAGGGTAGCTTAC---TTCAGCCACTCTGTCTC--TGGATCTGACCACAGCTCGGGAGGCCAGCACATGCAGAGCTGGAG--TCTTACCCCAAGTCGCTGCTGATCCTGGGCGAAGGCGGAGTTCAGGTCCATCGCTCCTGACGCCACAGGGTGTGCTTGTCTCACTCCACAGCCCTGCACTTTGTAGCAGTGAGGACTGACACCACTTCTCT
i chlSab2.chr4                 C 0 I 323
s calJac3.chr2                    154517 421 - 204313951 AAAAACTGGACACTTAGCCTCGCTCCCA--CTTCAGAGA-TCTTCATGGTGGTCATCCAGCCTCGTTTCCTCAGAA---CACTGTG--AGGTG---------GAGGAGGCACTGG---------------------------------------------------------------------------------------------------TAGAACTGGTGCTGTTT-------------GTATGGATTCAAGCAA---AGTAAAAACGAGCACTGTCGTAAC--TTACA--------------AACATG---TGCCCCCTTTTGTATCTGTGGTTAAAAAGGTACAGGTAGT-ATTA--AAAGGGTAGCTTACA-TTTCACACACTCAGTCTCTGTGGATTTGACCacagctcaggaggctggcacgtgcagaggtggcg--tcttgtcccaggtcgttgctgatcattggcaaaggcagagttcaggtccatccttcctgacgccacaggtagtgtttgtctcactccatagccctgcacttTGCAGCAGTGAGGACTGATACCACTTCTCT
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46091498 431 - 120421639 CAGAACCAGGAGGTTACTAGAGCGCCAG-CCTCTAAGGAGCCTTCATGGTAGCTGTTTTGTCT-GTTTTCTTAGAATAGCAGTATG--AAATAATACCTCATGAGGAGGCATAGA---------------------------GATCCCTCTCCCTGTTCCATCCATTTTTCTTTCCTC--TGTTACTTGT---GGATGTCAGTTGTAGTTGATATAGAGCGGGTGCGTTCT-------------GGATGAACAGTAGTGATGGTGCAGAGACCAGCACATCCTTGCC--TCAC-------------------TG--------------------GTAAAGAGAAAGGTTTGGGTAATCATT---------TTACATAT---TTTACATATCTTCACACTCCTAGTCATACCATAGCACA--AGTCTAA---ATGTGAAGACAGTT--CCTGGTCCTTAG----TGCTGTCCAGTTGCATAAGCAGGGCTCAAAGG-ATCTTCTCCGACACCAAATGTAGCCTTT-------------------------------GGGAGGGTCAAAAGCTCATCT--
i mm10.chr13                   I 3 C 0
s canFam3.chr34                 30176585 481 -  42124431 ---AATGGGACGCTTACTGTTGCTATGAGCTTCCAGAGGGTCTTCATGTGGGTTACGTTGGCCCATTCGTTCACGA---CGACATGTTAGGTG------------AAGACAC-------TGTTCCCCAAGGGAGGGTTGTGGGATCCCTGGGCCCCTCTCTTCCCGTTATGCTTCACTGGTGGTAACTGTTTAGTCTCAGTTGTTCTGTTTTTATCAAACAAAAGTTTTTT--------------TATGGATT----TTA----------ACTCTTACTGTCCTACTAGTTATATTAGCCCTCAGTATAACAAGCTGCACTCCCCTTTATATCTGCAGTTAG-------CAGATAAT-ATAACGAAATGGACAGTTATGTTTTCAAACACCTTCTCTC--TTGCTCTGACTGCAAGTCC--AGGCTA--AAAGGCAGAGGTAGGG--CCCTGTGCCCA-TTTTTGCTg--------caaaggcaggagtcaaaaccacctggtctgacccccaatctagtgcttgtctcac-----------------tgtaATGGTGAAGCCTGAAATAAAATCC--
i canFam3.chr34                C 0 C 0

a score=221365.000000
s hg38.chr3_KI270935v1_alt         45903 79 +    197351 CAGAGCAGTGTAGAAATTTTGAGCTTCTCTTTCTTTGAAAATGC-AGAAAAGAACATTTTGTGAGAATACCCTATACTTG-
s panTro4.chr3_GL389630_random     10405 79 +    103936 CAGAGCAGTGTAGAAATTTTGAGCTTCTCTTTCTTTGAAAATGC-AGAAAAGAACATTTTGTGAGAATACCCTATACTTG-
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199692313 79 + 202140232 CAGAGCAATGTAGAAATTTTGAGCTTCTCTTTCTTTGAAAATGC-AGAAAAGAACATTTTGTAAGAATACCCTATACTTT-
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120790710 77 + 123690457 CAGAGCAATGTAGAAATTTTGAGCTTCTCTTTCTTTGAAAATGC-AGAAAAGAACATTTTGTAAGAATACCCTATACT---
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     11462 80 + 180491593 CAGAGCAATGTAGAAATTTTGAGCTTCTTTTTCTCTGAAAATGTAAAAAAAGAACATTTTGTAAGAATACCCAATACTTg-
i rheMac3.chr6                 C 0 I 1935
s macFas5.chr6                 180276628 79 - 181584905 CAGAGCAATGTAGAAATTTTGAGCTTCTCTTTCTTTGAAAATGC-AAAAAAGAACATTTTGTAAGAATACCCTATACTTT-
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173164813 80 - 174439528 CAGAGCAATGTAGAAATTTTGagcttctttttctctgaaaatgcaaaaaaagaacattttgtaaGAATACCCTATACTTT-
i papAnu2.chr6                 C 0 C 0
s calJac3.chr2                    154938 79 - 204313951 CCCAGCAATATAGAAAGTTTGAGCTTCTCTTTCTTTGAAAATGC-AAAAAAGAACATTTTATAAGAATATCCCATACTTT-
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46091929 73 - 120421639 -AGAGCAAAGTGGAGACTCAGA---TTCCCTGCTTTGAGAAT---GAGAAAAATTGTTTTAAAAGAATAGATTATACTTT-
i mm10.chr13                   C 0 C 0
s canFam3.chr34                 30177066 80 -  42124431 CAGGGCAAAGCAGAAAATTCAAAGTTCCCTTTTTTTGGAAATGA-GAAAAAGCAAGTTTTATAAGAATATCTTATAATTTA
i canFam3.chr34                C 0 C 0
e chlSab2.chr4                  89611408 323 -  91010382 I

a score=264275.000000
s hg38.chr3_KI270935v1_alt         45982 143 +    197351 ACATCTGAGAAACCG----------------------------------------------------CTC-----ACACATGCAGCA-----------TCTC---ACGCAG--------------A--ATGCTGTg-gagtcggactcaaaaggctgcacgcctgtggtcctgttgataggacattctggacaaggcaca-tctagggaagaaaagggattggtggttgcca
s panTro4.chr3_GL389630_random     10484 143 +    103936 ACATCTGAGAAACCG----------------------------------------------------CTC-----ACACATGCAGCA-----------TCTC---ACGCAG--------------A--ATGCTGTg-gagtcggactcagaaggctgcacgcctgtgatcctgttgatacgacattctggaaaaggcaca-tctagggaagaaaagggattgctggttgcca
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199692392 143 + 202140232 ACGTCTGAGAAACTG----------------------------------------------------CTC-----ACACATGCAGCA-----------TCTC---ACGCAG--------------A--ATGCTGTg-gagtcagactcaaaaggctgcacacctgtggttctgttgataggacattctggaaaaggcaca-tctagggaagaaaagggattggtggttgcca
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120790787 140 + 123690457 ---TCTGAGAAACTG----------------------------------------------------CTC-----ACACATGCAGCA-----------TCTC---ATGCAG--------------G--ATGCTGTg-gagtcagactcaaaaggctgcacacctgtggttctgttgatacgacattctggaaaaggcaca-tctagggaagaaaagggattggtggttgcca
i nomLeu3.chr11                C 0 C 0
s macFas5.chr6                 180276707 143 - 181584905 ACATCTGAGAAACCG----------------------------------------------------CTC-----ACACATGCAGCA-----------TCTC---ACGCAG--------------A--ATGCTGTg-gagtcagactcaaaagactgcacacctgtgactctcttgatacaacattctggaaaaggcaca-tctagggaagaaaagggattggtggttgcca
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173164893 143 - 174439528 ACATCTGAGAAACCA----------------------------------------------------CTC-----ACGCATGCAGCA-----------TCTC---ACGCAG--------------A--ATGCTGTG-GAGTCAGACTCAAAAGGCTGCACACCTGTGGCTCTCTTGAtacgacattctggaaaaggcaca-tctagggaagaaaagggattggtggttgcca
i papAnu2.chr6                 C 0 C 0
s calJac3.chr2                    155017 142 - 204313951 ACATCTGAAAAACCG----------------------------------------------------CTC-----ATGCATGCAGCA------------CTC---ACGCAG--------------A--ATGTTGTg-gagtcagactcaaaacgctgcacacctgaggctctgttgatacagcattctggaaaaggcaca-tccagggaagaagaggggtcaggggttgcca
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46092002 148 - 120421639 ---TATAGGCAAAGG----------------------------------------------------TTCTACAAATACATTAAGAA-----------TTTTTAAATTCAGCAATGAAAGGACTAA--ATGTT-TA-GAGTAagactcaaaagactgcaca--tgtgttttta----------attctggaaattgcaagctgtaaggcagaaacaga--tcatggttgcta
i mm10.chr13                   C 0 C 0
s canFam3.chr34                 30177146 207 -  42124431 ATATCTGAAAGATCAATGCATACTTTAAAAAATTTTTTTTTGactcaaaaataaaaggaacaaattcctt-----gttcgtgcaacagcacaaatggatctc---agacat--------------attaagttgtattaatcaggctcaaaaggtttcatatatctga--ctatttatataacattatggaagagacaaa-actgaggaataagctggctcagtggttgcca
i canFam3.chr34                C 0 I 149
e rheMac3.chr6                     11542 1935 + 180491593 I
e chlSab2.chr4                  89611408 323 -  91010382 I

a score=125329.000000
s hg38.chr3_KI270935v1_alt         46125 110 +    197351 gaggctgTTTCCTGATTGTGCTGAGGCTTACAGACACAGCTCTGTGTGTGTCAAAGTTTGAAAAAC-CTACATTAAAAATGATG-------------AG----TTTATTTTACTGTATCT---TTACGCTT
s panTro4.chr3_GL389630_random     10627 110 +    103936 gaggctgTTTCCTGATTGTGCTGAGACTTACAGACACAGCTCTGTGTGTGTCAAAATTTGAAAAAC-CTACATTAAAAATGATG-------------AG----TTTATTTTACTGTATCT---TTATGCTT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199692535 112 + 202140232 gaggctgTTTCCTGATTGTGCTGAGACTTACAGACACAGCTCTGTGTGTGTCAAAATTTGAAAAACGCTACATTAAAAATGATG-------------AG---TTTTATTTTACTGTATCT---TTATGCTT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120790927  68 + 123690457 gaagctgTTTCCTGATTGTGCTGAGACTTAGAGACACAGCTCTGTGTGTGTCAAAATTTGAAAAGC---------------------------------------------------------------TT
i nomLeu3.chr11                C 0 C 0
s macFas5.chr6                 180276850 107 - 181584905 gaggctgTTTCCTGATTGTGCTAA----TACAGACACAGCTCTGTGTGTGTCAAAATTTGAAAAACCCTATACTAAAAATGATG-------------AG----tttattttactctatct---ttatgctt
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173165036 107 - 174439528 gaggctgttTCCTGATTGTGCTAA----TACAGACACAGCTCTGTGTGTGTCAAAATTTGAAAAACCCTATACTAAAAATGGTG-------------AG----TTTATTTTACTCTATct---ttatgctt
i papAnu2.chr6                 C 0 C 0
s calJac3.chr2                    155159 117 - 204313951 gaggctgTTTCCTGATTGTGCTCATAGTTA-ATACACAGCTCTGTGTGTGTCAGCATTTGAAAAATACTACACTAAAAATGGCG-------------AGTTTTTTTTTTTTACTGTATCTTAATTATGCTT
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46092150 107 - 120421639 g--gctggg--ctagtgggggTTTTACTT--AAACATGACTC--TATTTGCCAAAACCTGAAAAGCTCTACTAAAAAAAAAATGTAAACAAAAAGACAA----CAAATTTCACTGTCTT------------
i mm10.chr13                   C 0 C 0
e rheMac3.chr6                     11542 1935 + 180491593 I
e canFam3.chr34                 30177353 149 -  42124431 I
e chlSab2.chr4                  89611408 323 -  91010382 I

a score=142790.000000
s hg38.chr3_KI270935v1_alt         46235 59 +    197351 TAATTTTTAAAAATGAAAAGGAAAGAAAAAATGCTTGTAGCATCCCTACTTCTCCCCCA
s panTro4.chr3_GL389630_random     10737 59 +    103936 TAATTTTTAAAAATGAAAAGGAAAGAAAAAATGCTTGTAGCATCCCTACTTCTCCCCCA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199692647 53 + 202140232 TAATTTTTAAAAATGGAAAG------AAAAATGCTTGTAGCATCACTACTTCTCCCCCA
i ponAbe2.chr3                 C 0 I 30
s nomLeu3.chr11                120790995 59 + 123690457 TAATTTTTAAAAATGAAAAGGAAAGAAAAAATGCTTGTAGCATCCCTACTTCTCCCCCA
i nomLeu3.chr11                C 0 C 0
s macFas5.chr6                 180276957 59 - 181584905 taatttttaAAAATGGAAAGGAAAGAAAAAATGCTTGTAGCATCACTACTTCTCCCCCA
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173165143 59 - 174439528 taatttttaaaaatggaaaggaaagaaaaaatgcttgTAGCATCACTACTTCTCCTCCA
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89611731 59 -  91010382 TAATTTTTAAAAATGGAAAGGAAAGAAAAAATGCTTGTAGCATCACTACTTCTcccccc
i chlSab2.chr4                 I 323 C 0
s calJac3.chr2                    155276 59 - 204313951 TAATTTTTAAAAATGGAAAAGAAAGAAAAAGGGTTTGTAGCATCACTACTTCTCCCCCA
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46092257 40 - 120421639 TGA-ATTTAAAAATGAAAAG------------ATTTGTAA------TATTTTTCCCCCA
i mm10.chr13                   C 0 C 0
e rheMac3.chr6                     11542 1935 + 180491593 I
e canFam3.chr34                 30177353 149 -  42124431 I

a score=273.000000
s hg38.chr3_KI270935v1_alt         46294 1 +    197351 A
s panTro4.chr3_GL389630_random     10796 1 +    103936 A
i panTro4.chr3_GL389630_random C 0 C 0
s mm10.chr13                    46092297 1 - 120421639 A
i mm10.chr13                   C 0 I 539
e rheMac3.chr6                     11542 1935 + 180491593 I
e canFam3.chr34                 30177353 149 -  42124431 I
e calJac3.chr2                    155335 0 - 204313951 C
e chlSab2.chr4                  89611790 0 -  91010382 C
e macFas5.chr6                 180277016 0 - 181584905 C
e papAnu2.chr6                 173165202 0 - 174439528 C
e ponAbe2.chr3                 199692700 30 + 202140232 I
e nomLeu3.chr11                120791054 0 + 123690457 C

a score=4422.000000
s hg38.chr3_KI270935v1_alt         46295 18 +    197351 CCCCCGACCCCCCCA--AAA-----
s panTro4.chr3_GL389630_random     10797 20 +    103936 CCCCCGCCCCCCCCAGAAAA-----
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120791054 16 + 123690457 --CGCCCCCCCCCCA--AAA-----
i nomLeu3.chr11                C 0 I 37
s macFas5.chr6                 180277016 14 - 181584905 CCCCCC----CCCAA--AAA-----
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173165202 10 - 174439528 CCCCCC--------A--AAA-----
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89611790 18 -  91010382 ccccccacccccccA--AAA-----
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    155335 17 - 204313951 ------CTCCCTTCA--AAAAACAA
i calJac3.chr2                 C 0 C 0
e rheMac3.chr6                     11542 1935 + 180491593 I
e mm10.chr13                    46092298 539 - 120421639 I
e canFam3.chr34                 30177353 149 -  42124431 I
e ponAbe2.chr3                 199692700 30 + 202140232 I

a score=2548.000000
s hg38.chr3_KI270935v1_alt         46313 1 +    197351 A
s panTro4.chr3_GL389630_random     10817 1 +    103936 A
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199692730 1 + 202140232 a
i ponAbe2.chr3                 I 30 C 0
s nomLeu3.chr11                120791107 1 + 123690457 a
i nomLeu3.chr11                I 37 C 0
s macFas5.chr6                 180277030 1 - 181584905 A
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173165212 1 - 174439528 A
i papAnu2.chr6                 C 0 M 787
s chlSab2.chr4                  89611808 1 -  91010382 A
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    155352 1 - 204313951 A
i calJac3.chr2                 C 0 C 0
e rheMac3.chr6                     11542 1935 + 180491593 I
e mm10.chr13                    46092298 539 - 120421639 I
e canFam3.chr34                 30177353 149 -  42124431 I

a score=336308.000000
s hg38.chr3_KI270935v1_alt         46314 205 +    197351 TATATATATGTGTAtttttagacatagtctccctctgtcacccaggcttgagtgcagtggtacgatcaggtgcacgccaccacatctggctaatttttaaaaatgtattctagggacagggtctccctgtgttgcccagggtggtcttgaactcctgacctcaagtgatcctcctgtctcagcctcccaaagt-----ggttacatgcat
s panTro4.chr3_GL389630_random     10818 204 +    103936 AAAATATATATGTAtttttagacatagtcttcctctgtcacccaggcttgagtgcagtggtacgatcaggtgcacgccaccacatctggctaatttttaaaaatgtattctagg-acagggtctccctgtgttgcccaggatggtcttgaactcctgacctcaagtgatcctcctgtctcagcctcccaaagt-----gGTTACATGCAT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199692731 205 + 202140232 tatatatatCTGTATTTTTAGACATAGTctgcctctgtcgcccgggctggagtgcagtggtacgatcaggtgcacgccaccacatctggctaatttttaaaattgttttctagggacacggtctccctgtgttgcccaggttggtcttgaactcctgacttcaagtgatcctcctgtctcagcctcccaaagt-----gGTTACATGCAT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120791108 205 + 123690457 tatatatatgtatatttttagacatagtctccctctgtcgcccaggctggagcgcagtggtacgatcaggtgcacgccaccacatctggctaatttttaaaaatgttttctagggacagggtctccctgtgtttcccaggatggtcttgaactcctgacctcaagtgatcctcctgtctcagcctcccaaagt-----gGTTACATGCAT
i nomLeu3.chr11                C 0 C 0
s macFas5.chr6                 180277031 197 - 181584905 --------TACATAtttttagagatagtctccctctgtcgcccaggctggagtgcagtggtacggtcaggtgcacgccaccacacatggctaatttttaaaaatgtttcatagggacagggtctccctgtgttgcctaggatggttttgaactcctggcgtcaagtgatcctcctgtctcagcctcccaaagt-----gGTTATATGCAT
i macFas5.chr6                 C 0 C 0
s chlSab2.chr4                  89611809 199 -  91010382 ------AATACATAtttttagagatagtctccctctgtcgcccaggctggagtgcagtggtacgatcaggtgcacgccaccacacatggctaatttttaaaaatattttgtagggacagagtctccctgtgttgcccaagatggtcttgaactcctggcctcaagtgatcctcctgtctcagcctcccaaagt-----gGTTACATGCAT
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    155353 210 - 204313951 TACATAGATATGTGTTTTTAGAGATAGTCTCCCTCTGTCGCCCAGGCTGGAGTGCAGTGGTATGATcaggtgcacgccaccacacctggctaatttttaaacattttttgtagggacagggtctccctgtgttaccccggatggtcttgaactcttggcctcaggtgatgcacctgcatcagcttcccagagtgctgggattacatgtat
i calJac3.chr2                 C 0 I 375
e rheMac3.chr6                     11542 1935 + 180491593 I
e mm10.chr13                    46092298 539 - 120421639 I
e canFam3.chr34                 30177353 149 -  42124431 I
e papAnu2.chr6                 173165213 787 - 174439528 M

a score=346489.000000
s hg38.chr3_KI270935v1_alt         46519 265 +    197351 CTATCCATGTGTTAAAATCGGTAGAACTGAggccgggtgcagtggctcacacctataatcccaccactttgggaggccaaggcaggccgattgcttgagctcaggagttcgagaccagcttgggcaaggtggtgaaaccccgtctctaccagaaatacaaaaattagctgggcatggtggctcacacttgggtagtcccagctacttgggaggctgaggtgggaggattgttggagcctagaaggcggaggttgctgtgagccga
s panTro4.chr3_GL389630_random     11022 265 +    103936 CTATCCATGTGTTAAAATCGGTAGAACTGAggctgggtgcagtggctcacacctataatcccaccactttgggaggccaaggcaggccgattgcttgagctcaggagttcgagaccagcttgggcaaggtggtgaaaccccgtctctaccaaaaatacaaaaattagctgggcatggtggctcacacttgggtagtcccagctacttgggaggctgaggtgggaggattgctggagcctagaaggcggaggttgcagtgagccga
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199692936 265 + 202140232 CTATACGTGTGTTAAAATTGGTAGAACTGAggctgggtgcagtggctcacgcctataatcccaccactttgggaggccgaggcaagcagattgcttaagctcaggagttcgagaccagcttgggcaaggtggtgaaaccccgtctctaccaaaaatacaaaaagcagctgggcatggtggctcacagttgggtagtcccagctacttgggaggctgaggtgggaggattgctggagcctggaaggcggaggttgcagtgagccga
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120791313 265 + 123690457 CTATACATGCATTGAAATTGGTAGAACTGAggctgggtgcagtggctcgcgcctataatcccaccactttgggaggccgaggcaggcagattgcttgagctgaggagttcaagaccagcttgggcaaggtggtgaaaccccgtctctaccaaaaatacaaaaattagctgggtatggtggctcacacttgggtagtcccagctacttgggaggctgaggtgggaggattgctggagcctggaaggcggaggttgcagtgagccga
i nomLeu3.chr11                C 0 C 0
s macFas5.chr6                 180277228 265 - 181584905 CTATACATGTGTTAAAGTTGGTAGAACTGAggctgggcgcagtggctcatgcctataatcccaccactttgggaggccgaggcaggcagattgcttgagctcaggagttcaagaccagcttgggcaaggtggtaaaaccccgtctctgcaaaaaatacaaaaattagctgggcatggtggctcacaccagtgtagtcccagctacttgggaggctgaggtgggaggattgctggagccttgaaggcggaggttgcagtgagccga
i macFas5.chr6                 C 0 C 0
s chlSab2.chr4                  89612008 265 -  91010382 TTATACATGTGTTAAAGTTGGTAGAACTGAggctgggtgcagtggctcatgcctataatcccaccactttgggaggctgaggcaggcagattgcttgagctcaggagttcaagaccagcttgggcaaggtggtaaagccccgtctctgcaaaaaatacaaaaattagctgggcatggtggctcacaccagtgtagtcccagctacttgggaggctgaggtgggaggattgctggagcctggaaggcggaggttgcagtgagctga
i chlSab2.chr4                 C 0 C 0
e rheMac3.chr6                     11542 1935 + 180491593 I
e mm10.chr13                    46092298 539 - 120421639 I
e canFam3.chr34                 30177353 149 -  42124431 I
e calJac3.chr2                    155563 375 - 204313951 I
e papAnu2.chr6                 173165213 787 - 174439528 M

a score=175255.000000
s hg38.chr3_KI270935v1_alt         46784 118 +    197351 gatcacaccactgcactccagcctgggcaacagagggaggagacactgtctcaaaaaaaaaaaa--gaaaaaagaaaCTGTAGAACTGTCCACCGAAAGAAAAAAGTCAATTTTAATGGA
s panTro4.chr3_GL389630_random     11287 120 +    103936 ggtcacaccactgcactccagcctgggcaacagagggaggagacactgtctcaaaaaaaaaaaaaagaaaaaagaaaCTGTAGAACTGTCCATCGAAAGAAAAAAGTCAATTTTAATGAA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199693201 114 + 202140232 gatcacaccactgcactccagcctggaaaacagaggtaggagacactctctcaaaaaaaa------gaaaaaataaaTTGTAGAACTGCCCACCAAAAGAAAAAAGTCAATTCTACTGAA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120791578 119 + 123690457 gatcacaccactccactccagcctgggcaacagagggaagagacattgtctcaaaaaaaagaaaa-gaaaaaataaaTTGTAGAACTGTCCACCAGAAGAAAAAAGTCAATTTTAATGAA
i nomLeu3.chr11                C 0 C 0
s macFas5.chr6                 180277493 115 - 181584905 gatcataccactgcactccagcctgagcaacagagggaggagacgctgtctcaaaataaaa-----gaaaaaagaaaTTGTAGAGCGGTCCACTGAAAGAAAAAAGTCAATTTTACTGAA
i macFas5.chr6                 C 0 C 0
s chlSab2.chr4                  89612273 114 -  91010382 gatcacaccgctgca-tccagcctgagcaacagagggaggagacactgtctcaaaaaaaaa-----gaaaaaagaaaTTGTAGAACTGTCCACTGAAAGAAAAAAGTCAATTTTACTGAA
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                 204158006 114 + 204313951 gatcacaccattgcactccaggctgggtgacaggtagaggagacactatctcaaaaaaat------aaacaaagaaaTTATAGAACTGTGCACCAAAAGAAAAAAGTCAATTTTACTGAA
i calJac3.chr2                 n 375 C 0
e rheMac3.chr6                     11542 1935 + 180491593 I
e mm10.chr13                    46092298 539 - 120421639 I
e canFam3.chr34                 30177353 149 -  42124431 I
e papAnu2.chr6                 173165213 787 - 174439528 M

a score=60650.000000
s hg38.chr3_KI270935v1_alt         46902 33 +    197351 TGATCAATTTT-TAAAGCGTTATAAACAAAAGGA
s panTro4.chr3_GL389630_random     11407 33 +    103936 TGATCCGTTTT-TAAAGCGTTATAAACAAAAGGA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199693315 33 + 202140232 AGATCAATTGT-TAAAGCATTATAAACAAAAGGA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120791697 33 + 123690457 TGATCCATTTT-TAAAGCATTATAAACAAAAGGA
i nomLeu3.chr11                C 0 C 0
s macFas5.chr6                 180277608 33 - 181584905 TGATCAATTTT-TAAAGCATTATAATCAAAAGGA
i macFas5.chr6                 C 0 C 0
s chlSab2.chr4                  89612387 33 -  91010382 TGATCAATTTT-TAAAGCGTTATAATCAAAAGGA
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                 204158120 31 + 204313951 TGATCAATTTT-TAAAGCA--ATAAACAAAAGGA
i calJac3.chr2                 C 0 C 0
s canFam3.chr34                 30177502 34 -  42124431 TAATCACTTTTCTAATACATTACAAACAAAAGCA
i canFam3.chr34                I 149 C 0
e rheMac3.chr6                     11542 1935 + 180491593 I
e mm10.chr13                    46092298 539 - 120421639 I
e papAnu2.chr6                 173165213 787 - 174439528 M

a score=122223.000000
s hg38.chr3_KI270935v1_alt         46935 64 +    197351 AAAGAGACACCAGCAAGCCTAGAAGCATTTGAGCAGACC-GTCAAGAGACCCACAGCCTGGTCCC
s panTro4.chr3_GL389630_random     11440 64 +    103936 AAAGAGACACCAGCAAGCCTGGAAGTAGTTGAGCAGATC-CTCAAGAGACCCACAGCCAGGTTCC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199693348 64 + 202140232 AGAGAAACACCAGCAAGCCTAGAAGCATTTGAGCAGACC-CTCAAGAGACCCACAGCCTGGTCCC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120791730 64 + 123690457 AAAGAAACACCAGCGAGCCTAGAAACATTTGAGCAGACC-CTCAAGAGACCCACAGCCTGGGCCC
i nomLeu3.chr11                C 0 I 226
s macFas5.chr6                 180277641 64 - 181584905 AAAGAAACACCAGCAATCCTAGAAGCATTTGAGCAGGCC-CTCAAGAGACCCACACCCTGGTCCC
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173166001 62 - 174439528 AAAGAAATAGCAGCAATCCTAGAAGCA-TTGAGCAGGCC-CTCAAGAGACCCACA-CCTGGTCCC
i papAnu2.chr6                 M 787 C 0
s chlSab2.chr4                  89612420 60 -  91010382 AAAGAAACACCAGCAATCCTAGAAGCATTTGA----GCC-CTCAAGAGCCTCACACCCTGGTCCC
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                 204158151 62 + 204313951 AAAGAAACAGAAGCAAGCCTAGAAGCATGTGAGCAGACC-CTCAGGAGGCCCCTCGC--GGTCCT
i calJac3.chr2                 C 0 C 0
s canFam3.chr34                 30177536 65 -  42124431 GAAGAAACCACAGCTGGCCTGGAAGAGCTGGGGTGGTTTGCATGATAGACCAGTGCCCTCACTCC
i canFam3.chr34                C 0 C 0
e rheMac3.chr6                     11542 1935 + 180491593 I
e mm10.chr13                    46092298 539 - 120421639 I

a score=262747.000000
s hg38.chr3_KI270935v1_alt         46999 142 +    197351 --GAGGAGAGGCGGTAGGCGGGACAGGGCCTGTTTGACTCCTGCA---------TTTCATACCTCCTATCTCCTGCATGTGTTACCTATTGAAGAAAAAATACAT-----ATAATTTTATA---AAAAAAAAAAAC-----CTTTAAAACTTTTTTCAAGACATCT
s panTro4.chr3_GL389630_random     11504 141 +    103936 --GTGGAGAGGCGGTAGGCAGGGCAGGGCCTGTTTGACTCCTGCA---------TTTCATACCTCCTATCTCCTGCATGTGTTACCTATTGAAGaaaaaatatat-----ataattttata---aaaaaaaaaaac------tttaaaaCTTTTTTCGAGATATCT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199693412 143 + 202140232 --GTGGAGAGGCAGTGGGTGGGGTGAGGCCTGTTTGACTCCTGCA---------TTTCATGCCTCCTGTCTCCTGCATGTGTTACCTGTTGAAGaaaatatatat-----aaaatgttatatatataaaaaaaaac------tttaaaaCCTTTTT-AAGACATCT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120792020 138 + 123690457 --GGGGAGAGGCAGTGGGCGGGGCAGGGCCTGTTTGATTCCTGCA---------TTTCATACCTCCTACCTCCTGCATGTGTTACCTATTGAAGAAAATATATAT-----ATAATGTTATA------AAAAAAAAC------TTTACAATTTTTTTCAAGACATCT
i nomLeu3.chr11                I 226 C 0
s macFas5.chr6                 180277705 135 - 181584905 --CTGGAGAGGCGGTGGGTGGGGCGGGGTTTGTTTGACTCCTGCA---------TTTCATACCTCCTACCTTCTGCATGTATTATCTGTTGAAGAAA--ATATAT-----ATAATGTTATT-------AAAAAAAC------TTTAAAACTTTTTTCAAGACATCT
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173166063 131 - 174439528 --T--GGGGAGCGGTGGGCGGGGC-GGGCCTGTTTGACT-CTGCA---------TTTCATACCTCCTACCTTCTGCATGTATTACCtgttgaagaaa--atatat-----ataatgttata-------aaaagaac------tttaaaacttttttgaagACATCT
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89612480 135 -  91010382 --CTGGGGAGGTGGTGGGTGGGGCGGGGCCTGTGTGACTCCTGCA---------TTTCATACCTCCTACCTTCTGCATGTGTTACCTGTTGAAGAAA--ATATAT-----ATAATGTTATA-------AAAAGAAC------TTTAAAACTTTTTTCAAGACATCT
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                 204158213 132 + 204313951 --TTGGAGAGGCAGTGGGCAG--CATGACCTGTGTGTCCCCTGCA---------TTTCATACCTCCTACCTCCTGCATGTACTAACTATTGAAGAAA--ATATGC-----ATAAAGTTATA-------CAAAAAAC-------TTAAAACTTTTTTCAAGACATCT
i calJac3.chr2                 C 0 C 0
s canFam3.chr34                 30177601 149 -  42124431 TTGTAGAGAGCTACTGTGAGCAAC----CCTACTTTGC--CTGCAAATCCTTGTTTCCTCATTTCATACCTTGTGCCCATATTACCTATGGAAGAAA--ATTCATTTCAAACCATGTCATT-------AAAAAAACAACATCTTTAAAA--GTTTTCAAAACATTT
i canFam3.chr34                C 0 I 230
e rheMac3.chr6                     11542 1935 + 180491593 I
e mm10.chr13                    46092298 539 - 120421639 I

a score=201839.000000
s hg38.chr3_KI270935v1_alt         47141 90 +    197351 TGGAAACACAAGAGTTGCAAATCTTggccgtgcgcagcagctcacacatgtgatcccagcactttgggaggctgaggcaggtggctcacc
s panTro4.chr3_GL389630_random     11645 90 +    103936 TGGAAACACAAGAGTTGCAAATCTTggccatgcgcagcagctcacacatgtgatcccagcactttgggaggctgaggcaggtggctcacc
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199693555 90 + 202140232 TGGAAACATAAGAGTTGCAAATCTTggccgtgcgcggtggctgacacatgtgatcccagcactttgggaggccgaggcaggtggctcacc
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120792158 90 + 123690457 TGGAAACACAAGAGTTGCAAATCTTggccgtgcgtggtggctcacacatgtgatcccagcactttgtgaggccgaggcaggtggctcacc
i nomLeu3.chr11                C 0 C 0
s macFas5.chr6                 180277840 90 - 181584905 TAGAAACACAAGAGTTGCAAATCTCggctgtgcacagtggctcacacttgtgatcccagcactttggaaggccgaggcaggtggatcacc
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173166194 90 - 174439528 TAGAAACACAAGAGTTGCAAATCtcggctgtgcacagtggctcacacttgtgatcccagcactttggaaggccgaggcaggtggctcacc
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89612615 90 -  91010382 TGGAAACACAAGAGTTGCAAATCTCggctgtgcgcagtggctcacacttgtgatcccagcactttgggaggccgaggcaggtggctcacc
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                 204158345 90 + 204313951 TAGAAACACAAGAGTTGCACATCTTGCccaagtgcagtggcttatacatgtaatcccagcactctgggaagctgatgcaggtgcatcacc
i calJac3.chr2                 C 0 n 0
e rheMac3.chr6                     11542 1935 + 180491593 I
e mm10.chr13                    46092298 539 - 120421639 I
e canFam3.chr34                 30177750 230 -  42124431 I

a score=180763.000000
s hg38.chr3_KI270935v1_alt         47231 79 +    197351 tgaggtcaggagttcgagaccagcctggccaaca-tggtgaaaccccatctctactg-aaaatacaaaaattagccaggta
s panTro4.chr3_GL389630_random     11735 79 +    103936 tgaggtcaggagttcgagaccagcctggccaaca-tggtgaaaccccatctctactg-aaaatacaaaaattagccaggta
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199693645 81 + 202140232 tgaggtcaggagttcgagaccagccctgtccacattgttgaaaccccatctctactgaaaaatacaaacattacccaggTA
i ponAbe2.chr3                 C 0 M 336
s nomLeu3.chr11                120792248 79 + 123690457 tgaggtcaggagttcgagaccagcctggccaaca-tggtgaaaccccatctctactg-aaaatacaaaaattagccaggta
i nomLeu3.chr11                C 0 C 0
s macFas5.chr6                 180277930 79 - 181584905 tgaggtcaggagtttgagaccagcctggtcaaca-tggtgaaaccccatctctactg-aaaatacaaaaattagccaggta
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173166284 79 - 174439528 tgaggtcaggagtttgagaccagcctggccaaca-tggtgaaaccccatctctactg-aaaatacaaaaattagccaggta
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89612705 79 -  91010382 tgaggtcacgagtttgagaccagcctggtcaaca-tggtgaaaccccatctctactg-aaaatacaaaaattagccaggta
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    155938 79 - 204313951 tgtgatcaggagtttgagaccagcctggccaaca-tggggaagccccatctctacta-aaaacagaaaaattagccagaca
i calJac3.chr2                 I 375 C 0
e rheMac3.chr6                     11542 1935 + 180491593 I
e mm10.chr13                    46092298 539 - 120421639 I
e canFam3.chr34                 30177750 230 -  42124431 I

a score=110099.000000
s hg38.chr3_KI270935v1_alt         47310 67 +    197351 tggttgcaaactcctgtagtcccatctactccagagtctgaggcaggaggattgcttgaaccaggag
s panTro4.chr3_GL389630_random     11814 67 +    103936 tggttgcatactcctgtagtcccatctactccagagtctgaggcaggaggattgcttgaaccaggag
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120792327 67 + 123690457 tggtggcgtactcctgtagtcccagctactccggagtctgaggcaggaggattgcctgaaccaggag
i nomLeu3.chr11                C 0 C 0
s macFas5.chr6                 180278009 67 - 181584905 tggtggcatactcctgtagtcccagctactccggagactgaggcagaaggattgcttgaaccaggag
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173166363 67 - 174439528 tggtggcatactcctgtagtcccagctactccggagactgaggcaggaggattgcttgaaccaggag
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89612784 67 -  91010382 tggtggcacactcctctagtcccagctactccagaggctgaggcataaggattgcttgaaccaggag
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    156017 67 - 204313951 tggtgaaacactctagtagtcccagctacttgggaggctgaggcaggaggatcacttgaactaggag
i calJac3.chr2                 C 0 C 0
e rheMac3.chr6                     11542 1935 + 180491593 I
e mm10.chr13                    46092298 539 - 120421639 I
e canFam3.chr34                 30177750 230 -  42124431 I
e ponAbe2.chr3                 199693726 336 + 202140232 M

a score=147646.000000
s hg38.chr3_KI270935v1_alt         47377 63 +    197351 gtggaggttgcagtgagccgagatggtgccactgcactccagcctgggctacagagcaaaatt
s panTro4.chr3_GL389630_random     11881 63 +    103936 gtggaggttgcagtgagccgagatggtgccaccgcactccagcctgggctacagagcaaaatt
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199694064 63 + 202140232 gtggaggttacagtgagctgagatggtgccactgcactccagcctggactacagagcaaaatt
i ponAbe2.chr3                 M 336 C 0
s nomLeu3.chr11                120792394 63 + 123690457 gtggaggttgcagtgagccaagatggtgtcactgcactccagcctgggctacagagcaaaatt
i nomLeu3.chr11                C 0 M 529
s macFas5.chr6                 180278076 63 - 181584905 gtggaggttgcagtgagccgagatggtgccagtgcactccaacctgggctacagagcaaaatt
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173166430 63 - 174439528 gtggaggttgcagtgagccgagatggtgccaatgcactccagcctgggctacagagcaaaatt
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89612851 63 -  91010382 gtggaggttgcagtgagtcgagatggtgccagtgcactctagcctgagctacagagcaaaatt
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    156084 61 - 204313951 gtggaggttgcagggagccgagatggtgccgctgcactccagactgggctacaaag--aaatt
i calJac3.chr2                 C 0 C 0
e rheMac3.chr6                     11542 1935 + 180491593 I
e mm10.chr13                    46092298 539 - 120421639 I
e canFam3.chr34                 30177750 230 -  42124431 I

a score=28925.000000
s hg38.chr3_KI270935v1_alt         47440 31 +    197351 ccatctcaaaaaaaaaaaaa---aaaaaTTGCAA
s panTro4.chr3_GL389630_random     11944 26 +    103936 ccatctcaaaaaaaaaaaaa--------TTGCAA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199694127 34 + 202140232 ccatcttaaaaaaaaaaaaaaaaaaaaaaTTCAA
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180278139 23 - 181584905 ccatctc---aaaaaaaaaa--------TTGCAA
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173166493 23 - 174439528 ccatctc---aaaaaaaaaa--------ttgcaa
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89612914 25 -  91010382 ccatctc-aaaaaaaaaaaa--------TTGCAA
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    156145 24 - 204313951 ccatctc--aaaaaaaaaaG--------TTGCAA
i calJac3.chr2                 C 0 C 0
e rheMac3.chr6                     11542 1935 + 180491593 I
e mm10.chr13                    46092298 539 - 120421639 I
e canFam3.chr34                 30177750 230 -  42124431 I
e nomLeu3.chr11                120792457 529 + 123690457 M

a score=257710.000000
s hg38.chr3_KI270935v1_alt         47471 151 +    197351 ATCTTGAAGTATAGGTGAGAG--CACACAACAGTCCAAATCAGCAGGTGACTTGCAAGCACACA----GCAGCCACCTTCCTCCCCCTAATGTGAAGGACA-GTGGGGCGGCCGGCCC--CTTGGGACCACCATCTGGAAGGTG--TC-ATTTTTTCCCGTTA
s panTro4.chr3_GL389630_random     11970 151 +    103936 ATCTTGAAGTATAGGTGAGAG--CACACAACAGTCCAAATCAGCAGGTGGCTTTCAAGCACACA----GCAGCCACCTTCCTCCCCCTAATGCGAAGGACA-GTGGGGTGGCCGGCCC--CTTGGGACCACCATCTGGAAGGTG--TC-TTTTTTTCTCCTTA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199694161 149 + 202140232 ATCTTGAACGTTAGGTGAGAG--CACATAAGAGTCCAAATCAGCA-GTGACTTTCAAGCACACA----GCAGCCACCTTCCTCCCCCTGATGCAAAGGACA-GTGGGGTGGCCGGCCC--CTTGGGACCACCATCTGGAAGGTG--TC--TTTTTTCCCCTTA
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180278162 154 - 181584905 ATCTTGAAGTGTAGGTGAGAG--CACACAAGAGTCCAAATCAGCAGGTGACTTTCAAGCACACA----GCAACCACCTTCCTCCCCCTTATGCGAAGGACG-GTGGGGTGGCCGGCCC--CTTGGGACCACCATCTGGAAGGTGGTTTTTTTTTTTCCCCTTA
i macFas5.chr6                 C 0 I 26
s papAnu2.chr6                 173166516 152 - 174439528 atcttGAAGTGTAGGTGAGAG--CACACAAGAGTCCAAATCAGCAGGTGACTTTCAAGCACACA----GCAGCCACCTTCCTCCTCTTTATGTGAAGGACG-GTGGGGTGGCCGGCCC--CTCAGGACCACCATCTAGAAGgtg--tcctttttttcccctta
i papAnu2.chr6                 C 0 I 20
s chlSab2.chr4                  89612939 152 -  91010382 ATCTTGAATTGTAGGTGAGAG--CACACAAGAGTCCAAATCAGCAGGTGACTTTCAGGCACACA----GCAGCCACCTTCCTTCCCCTGATGCGAAGGACG-GTGGGGTGGCCAGCGC--CTTGGGACCACCATCTGGAAGGTG--TCCTTTTTTTCCCCTTA
i chlSab2.chr4                 C 0 I 20
s calJac3.chr2                    156169 149 - 204313951 ATCTTGAAGTCTAGGTGAGAGCACACACAAGAATTTGAATCAGCAAGTGACTTTCAAGCACACA----GCGGCCACCTTCCT-CCCCTGATGCAAAGGATG-GTGGGGTGGCCAGCCC--CTCGGGATTACCATCTGG-AGGTG--TC---TTTTTTCCCTTA
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46092837 153 - 120421639 ATCTTGAGGTTT-TGTAAGAG--CACTTAAGAGTCAAGACCAGCAGGCAGCTTTTCAAGACACATAGGATAGCTACCTGTTTATTCCTTCATCAGAAAACGTGTGAGGCTAACATCTCAAATTGAGACCACTATCTTAAGGGTA--ACAATTT-----CCTTA
i mm10.chr13                   I 539 C 0
e rheMac3.chr6                     11542 1935 + 180491593 I
e canFam3.chr34                 30177750 230 -  42124431 I
e nomLeu3.chr11                120792457 529 + 123690457 M

a score=-1125.000000
s hg38.chr3_KI270935v1_alt         47622 8 +    197351 GTGGAGTG
s panTro4.chr3_GL389630_random     12121 8 +    103936 GTGGAGTG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199694310 8 + 202140232 GTGGAGTG
i ponAbe2.chr3                 C 0 C 0
s papAnu2.chr6                 173166688 6 - 174439528 atacac--
i papAnu2.chr6                 I 20 C 0
s chlSab2.chr4                  89613111 6 -  91010382 ATACAC--
i chlSab2.chr4                 I 20 C 0
s calJac3.chr2                    156318 7 - 204313951 GTGGAGT-
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46092990 8 - 120421639 CTGGAGTA
i mm10.chr13                   C 0 C 0
e rheMac3.chr6                     11542 1935 + 180491593 I
e canFam3.chr34                 30177750 230 -  42124431 I
e macFas5.chr6                 180278316 26 - 181584905 I
e nomLeu3.chr11                120792457 529 + 123690457 M

a score=5922.000000
s hg38.chr3_KI270935v1_alt         47630 3 +    197351 ACA
s panTro4.chr3_GL389630_random     12129 3 +    103936 ACA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199694318 3 + 202140232 ACA
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180278342 3 - 181584905 ACA
i macFas5.chr6                 I 26 C 0
s papAnu2.chr6                 173166694 3 - 174439528 aca
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89613117 3 -  91010382 ACA
i chlSab2.chr4                 C 0 C 0
s mm10.chr13                    46092998 3 - 120421639 ACA
i mm10.chr13                   C 0 I 22
e rheMac3.chr6                     11542 1935 + 180491593 I
e canFam3.chr34                 30177750 230 -  42124431 I
e calJac3.chr2                    156325 0 - 204313951 C
e nomLeu3.chr11                120792457 529 + 123690457 M

a score=95264.000000
s hg38.chr3_KI270935v1_alt         47633 82 +    197351 TTTATATACACTTAATGTATATAAATCTGTATACATTTA---Attttttttttttgtaagacagggtctcgctctgttgcccagg
s panTro4.chr3_GL389630_random     12132 80 +    103936 TTTGTATACACTTAATGTATATAAATTTGTATACATTTA---Atttttttttt--gtaagacagggtctcactctgttgcccagg
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199694321 85 + 202140232 TTTATATACACTTAATGTATATAAATTTGTATACATTTAtttatttattttttttgtaagacagggtctcgctctgttgcccagg
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr6                 180278345 74 - 181584905 TTTATATACACTTAATATGTATAAATTTGTATACttt-----ttttttttttttttaaagacagcgtctcactccg------agg
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173166697 75 - 174439528 tttatatacacttaatatgtataaatttgtatac----------ttttttttttttaaagacaaggtctcactctgttgtgcagg
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89613120 76 -  91010382 TTTATATACACTTAATATGTATAAATTTGTATAC---------tttttttttttttaaagacagggtctcactctgttgtgcagg
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    156325 65 - 204313951 ------------------ATATAAATTTGTATACATTTAA--ttttttttttttttaaagacagagtctcactctgttgcccagg
i calJac3.chr2                 C 0 C 0
e rheMac3.chr6                     11542 1935 + 180491593 I
e mm10.chr13                    46093001 22 - 120421639 I
e canFam3.chr34                 30177750 230 -  42124431 I
e nomLeu3.chr11                120792457 529 + 123690457 M

a score=156995.000000
s hg38.chr3_KI270935v1_alt         47715 70 +    197351 ctggagtgcagtggcgcgatctcggctcactgcaacctccacctttcgggttaaagcagttctcatgcca
s panTro4.chr3_GL389630_random     12212 70 +    103936 ctggagtgccgtggcacgatctcggctcaccgcaacctccacctttcgggttgaagcagttctcatgcca
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199694406 70 + 202140232 ctggagtgcagtggcgtgatctcggctcactgcaacctccgcctttcaggttcaagcagttctcatgcca
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120792986 70 + 123690457 ctggagtgcagtggcacgatctcggctcactgcatcctccccctttcaggtttaagcagttctcatgATA
i nomLeu3.chr11                M 529 C 0
s macFas5.chr6                 180278419 70 - 181584905 ctggagtgcagtggcgcgatctcagctcactgcaaccttcacctttcaggttcaagcagttctcgtgcct
i macFas5.chr6                 C 0 I 46
s papAnu2.chr6                 173166772 70 - 174439528 ctggagtgcagtggcgcgatctcagctcactgcaaccttcacctttcaggttcaagcagttctcgtgcct
i papAnu2.chr6                 C 0 I 46
s chlSab2.chr4                  89613196 70 -  91010382 ctggagcgcaatggcgcgatctcagctcactgcaaccttcacctttcaggttcaagcagttctcgtgcct
i chlSab2.chr4                 C 0 I 46
s calJac3.chr2                    156390 70 - 204313951 ctggagtgcagtggtgtagtctcagctcactgcaacctccaccttccgggttcaagcagttctcatgcct
i calJac3.chr2                 C 0 C 0
e rheMac3.chr6                     11542 1935 + 180491593 I
e mm10.chr13                    46093001 22 - 120421639 I
e canFam3.chr34                 30177750 230 -  42124431 I

a score=378897.000000
s hg38.chr3_KI270935v1_alt         47785 143 +    197351 ----------------------------------------------gataatttttgtgtttttagtagaaatgaggttttgccacgttggccaggctgctcttgaa--------ctcctgacctcaagtgcttcacctac---ctcagcctcctaaagtgctgggattacaggcgtgagccactgcacctggccTACAT
s panTro4.chr3_GL389630_random     12282 143 +    103936 ----------------------------------------------gataatttttgtgtttttagtagaaatgaggttttgccacgttggccaggctgctcttgaa--------ctcctgacctcaagtgcttcacctac---ctcagcctcctaaagtgctgggattacaggcgtgagccaccgcacccggccTACAT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199694476 143 + 202140232 ----------------------------------------------gataatttttgtatttttagtagaaatgagggtttgccacattggccaggctgctcttgag--------ctgctgacctcaagtgatccacctac---ctcggcctcctaaagtgctgggattacaggcgtgagccaccgcacccggccTACAT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120793056 142 + 123690457 ----------------------------------------------ATtaatttttgtgtttttagtagaaatgaggttttaccacgttggccaggctgctcttgaa--------ctcctgacctcgagtgctccacctac---ctcagcctcctacagtgctgggatcacaggcgtgagccaccgcccccggccTACA-
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     13477 142 + 180491593 ----------------------------------------------gataatttttgtgtttttagtagaaacgaggttttgccacgttggccaggctgcacttgaa--------ctcctgacctcaagtgatccacctat---ctcggcctcctaaagtgctgggattacaggcgagagctaccgcacctggccTTCA-
i rheMac3.chr6                 I 1935 C 0
s macFas5.chr6                 180278535 142 - 181584905 ----------------------------------------------ggtcatttttgtgtttttagtagaaatgaggttttgccatgttggccaggctgctcttgaa--------ctcctgacctcaagtgatccacctat---ctcggcctcctaaagtgctgggattacaggcgagagctaccgcacctggccTTCA-
i macFas5.chr6                 I 46 C 0
s papAnu2.chr6                 173166888 150 - 174439528 ----------------------------------------------ggtcatttttgtgtttttagtagaaatgaggttttgccatgttggccaggctgctcttgaactcctgacctcctgacctcaagtgatccacctat---cttggcctcctaaagtgctgggattacaggtgagagctaccgcacctggccttca-
i papAnu2.chr6                 I 46 C 0
s chlSab2.chr4                  89613312 142 -  91010382 ----------------------------------------------ggtcatttttgtgtttttagtagaaatgaggttttgccatgttggccaggctgctcttgaa--------ctcctgacctcaagtgatccacctat---ctcggcctcctaaagtgctgggattacaggcgagagctaccgcacctggccTTCA-
i chlSab2.chr4                 I 46 C 0
s calJac3.chr2                    156460 191 - 204313951 cagtctcccaagtagctgggtttacaggtgcacaccaccatacctgtctaatttttgtatttttagtagaaacaaagttttgccatgttggccaggttggtctcaaa--------tgcctgacctcaagtgatccatccaccatctcggcctcctgaagtgctgggattacaggtgtgacacaccctgcccCGGCTACA-
i calJac3.chr2                 C 0 C 0
e mm10.chr13                    46093001  22 - 120421639 I
e canFam3.chr34                 30177750 230 -  42124431 I

a score=281559.000000
s hg38.chr3_KI270935v1_alt         47928 87 +    197351 TTTAATTTTTTAATTTTAGAGATGATTTCTAGTTTATTCACTCTAAGATCACTTAATGGATATCTACTGTGTGCCAACAGT-TTTGCC
s panTro4.chr3_GL389630_random     12425 87 +    103936 TTTAATTTTTTAATTTTAGAGATGATTTCTAGtttattcactctaagatcacttaatggatatctactgtgtgccagCAGT-TTTGCC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199694619 87 + 202140232 TTTAATTTTTTAATTTTAGAGATGATTTCTAGTTTATTCACTCTAAGATCACTTAATGGCTATCTACTGTGTGCCAACAGT-TTTGCC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120793198 87 + 123690457 TTTAATTTTTTAATTTTAAAGATGATTTCTAGTTTATTCACTCTAAGATTATTTAATGGATATCTACTGTGTGCCAACAGT-TTTGCG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     13619 87 + 180491593 TTTAATTTTTTAATTTTAGAGATGATTTCTAGTTTATTCACTCTAAGATAAGTTAATGGATATCTACTGTGTGCCAACAAT-TTTGCC
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180278677 87 - 181584905 TTTAATTTTTTAATTTTAGAGATGATTTCTAGTTTATTCACTCTAAGATAAGTTAATGGATATCTACTGTGTGCCAACAAT-TTTGCC
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173167038 87 - 174439528 tttaattttttaattttagagatgatTTCTAGTTTATTCACTCTAAGATAAGTTAATGGATATCTACTGTCTGCCAACAAT-TTTGCC
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89613454 87 -  91010382 TTTAATTTTTTAATTTTAGAGATGATTTCTAGTTTATTCACTCTAAGATAAGTTAATGGATATCTACTGTGTGCCAACAAT-TTTGCC
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    156651 88 - 204313951 TTTAATTTTTTAATTTTAGAGGTGATGTCTAGCTTGTTCACTCCAAGATCTCATAATGGCTTTCTACTGTGTGTCAACAATGTTTGCC
i calJac3.chr2                 C 0 C 0
s canFam3.chr34                 30177980 81 -  42124431 TCTAATTTTTTAA-CTTAGGAATGGATTCTGATTTGTTCAT----AGATTTCATATTGGATACCTACTCTTTGCCAGAAAT-TTTGT-
i canFam3.chr34                I 230 C 0
e mm10.chr13                    46093001 22 - 120421639 I

a score=241830.000000
s hg38.chr3_KI270935v1_alt         48015 85 +    197351 TTTTATGTCTGTTCTTTAAAATTGGCCCCAACTCAACAGATGGCCTCAGATGTAGGGTGGGTTGGCAG--TGTGTTAGCTCAGGAGA
s panTro4.chr3_GL389630_random     12512 85 +    103936 TTTTATGTCTGTTCTTTAAAATTGGCCCCAACTCAACAGATGACCTCAGATGTAGGGTGGGCTGGCAC--TGTGTTAGCTCAGGAGA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199694706 85 + 202140232 TTTTATGTCTGTTCTTTAAAATTGTTCCCAACTCAACAGATGGCCTCAGATGTAGGGTGGGCTGGCAG--TGTGTTAGCTCAGGAGA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120793285 85 + 123690457 TTTCATGTCTGTTCTTTAAAATTGGCCCCAACTCAACGGATGGCCTCAGATGTAGGGTGGGCTGGCAG--TGTGTTAGCTCAGGAGA
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     13706 84 + 180491593 TTT-ATGTATGTTCTTTAAAATTGGCCCCAACTCAACAGATGGCCTCAGATGTAGGGTGGGCTGGCAG--TGTGTTAGCTGAGAAGA
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180278764 84 - 181584905 TTT-ATGTATGTTCTTTAAAATTGGCCCCAACTCAACAGATGGCCTCAGATGTAGGGTGGGCTGGCAG--TGTGTTAGCTGAGGGGA
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173167125 84 - 174439528 TTT-ATGTATGTTCTTTAAAACTGGCCCCAACTCAACAGATGACCTCAGATGTAGGGTGGACTGGCAG--TGTGTTAGCTGAGAAGA
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89613541 84 -  91010382 TTT-ATGTATGTTCTTTAAAACTGGCCCCAGCTCAACAGATGGCCTCAGATGTAGGGTGGGCTGGCAG--TGTGTTAGCTGAGGAGG
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    156739 83 - 204313951 TTT-CTGTATGTTCTTTAAAATTGGCCCCAGCTCAGTAGATGGCCTCAGTTGTGGGGTTG-CTGGCCG--TGTGTTAGCTCAGTAGA
i calJac3.chr2                 C 0 I 222
s mm10.chr13                    46093023 81 - 120421639 TTCTCTGTATATGTCTTAAGACTGACTCTGAGTCAGT-----GTCTCATTCCTTAGGTTGG-TGCCAAACAGTGTTGGTTCAGATTC
i mm10.chr13                   I 22 C 0
s canFam3.chr34                 30178061 57 -  42124431 TTTTAAGTTTGCTCTT------TGGCCCCAAGTCAGTATGTGGTTC----TTTAGGGTTAG--GGCAG--T----------------
i canFam3.chr34                C 0 C 0

a score=845931.000000
s hg38.chr3_KI270935v1_alt         48100 253 +    197351 CTTACACCGTTTCCAGGCTCCTTGAGCGGCTATGCTACATTTTTGTGTGTAGTACTAAATCCATTTGTTTTTTTA----AAACGGTTT---TCAAAAGTTAAATTCTAGCTCTTTT-------TGTTGTTGTT---TTAGGAGATAAAGTCCCTCCAATTAAACCAAATGCTGGGGAAGAATCTGTCACGAATCTTGACAAATTGAGATTTGCTGATGGAAGAAGCATAAGAACATCGGAACTGCGACTCAGCATGCAGAAGGTAAGAGC
s panTro4.chr3_GL389630_random     12597 256 +    103936 CTTACACAGTTTCCAGGCTCCTTGAGCGGCTATGCTTCATTTTTGTGTGTCATACTAAATCCATTTGGTTTTTTA----AAACGGTTT---TCAAAAGTTAAATTCTAGCTCTTTT-------TGTTGTTGTTGTTTTAGGAGATAAAGTCCCTCCAATTAAACCAAATGCTGGGGAAGAATCTGTCACGAATCTTGACAAATTGAGATTTGCTGATGGAAGAAGCATAAGAACATCGGAACTGTGACTCAGCATGCAGAAGGTAAGAGC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199694791 250 + 202140232 CTTACACAGTTTCCAGGCTCCTTGAGTGGCTGTGCTACATATTTGTGTGTCATTCTAAATCCATTTGGTTTTTTA----ACACGGTTT---TCAAAGGTTAAATTCTAGCTTTTTT-------TGTTGTT------TTAGGAGATAAAGTCCCTCCAATTAAACCAAATGCTGGGGAAGAATCTGTCACGAATCTTGAGAAATTGAGATTTGCTGATGGAAGAAGCATAAGAACATGGGAACTGTGACTCAGCATGCAGAAGGTAAGAGC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120793370 250 + 123690457 CTTACACAGTTTCCAGGCTCCTTGAGCGGCTGTGCTACATATTTGTATGTCATTCTAAATCCATTTGGTTTTTTG----AAACGGTTT---TCAAAAGTTAAATTCCAGCTTTTTT-------TGTTGATGTT---TTAGGAGATAAAGTCCCTCCAATTAAACCAAATGCTGGGGAAGAATCTGTCATGAATCTTGACAAATTGAGATTTGCTGATG---GAAGCATAAGAACATCGGAACTGCGACTCAGTATGCAGAAGGTAAGAGC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     13790 246 + 180491593 CTTTCGCAGTTTCCAAGCTCCTTGAGCGGCTGTGCTATGTATTTTTGTATCATTCTAAATCCATTTGGTTTTTTA----AAATAGTTT---TGAAAAGTTAAATTCTAACTTTTT--------TTTTGTT------TTAGGAGATAAAGTCCCTCCAATTAAACCAAATGCTGGAGAAGAATCTGTCATGAATCTTGACAAATTGAGATTTGCTGACG---GAAGCGTAAGAACGTCGGAACTTCGACTCTGCATGCAGAAGGTAAGAGC
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180278848 247 - 181584905 CTTTCACAGTTTCCAAGCTCCTTGAGCGGCCGGGCTACGTATTTTTGTGTCATTCTAAATCCATTTGGTTTTTTA----GAACGGTTT---TGAAAAGTTAAATTCTAGCTTTTTT------GTTTTGTT------TTAGGAGATAAATTCCCTCCAATTAAACCAAATGCTGGGGAAGAATCT-TCATGAATCTTGACAAATTGAGATTTGCTGACG---GAAGCGTAAGAACGTCGGAACTTCGACTCTGCATGCAGAAGGTAAGAGC
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173167209 247 - 174439528 CTTTCACAGTTTCCAAGCTCCTTGAGCGGCCGTGCTACGTATTTTTGTGTCATTCTAAATCCAtttggtttttta----gaacggttt---tgaaaagttaaattctagctttttt------gttttgtt------ttaggagatAAATTCCCTCCAATTAAACCAAATGCTGGGGAAGAATCT-TCATGAATCTTGACAAATTGAGATTTGCTGACG---GAAGCGTAAGCACGTAGGAACTTCGACTCTGCATGCAGAAGGTAAGAGC
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89613625 247 -  91010382 CTTTTGCAGTTTCCAAGCTCCTTGAGCGGCCGTGCTACGTATTTTTGTGTCATTCTAAATCCATTTGATTTTTTA----AAATGGTTT---TGAAAAGTTAAATTCTAGCTTTTTT------GTTTTGTT------TTAGGAGATAAATTCCCTCCAATTAAACCAAATGCTGGGGAAGAATCT-TCATGAATCTTGACAAATTGAGATTTGCTGACG---GAAGCATAAGAACGTCGGAACTTCGACTCAGCATGCAGAAGGTAAGAGC
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    157044 252 - 204313951 CCTGCACTG--TCCAGGCACCTCGAGTGGCTGTGCCACGTATTTGTGTGTCATTCTCAATCCATTAGGGTTTTTA----AAGTGGTTT---TCAAAAGTTAAATTCTAGCtttttttaattttttttttt------ttaGGAGATAAAGTCCCTCCAATTAAACCAAATGCTGGGGAAGAATCTGTCATGAATCTTGACAAATTGAGATTTGCTGACG---GAAGCATAAGAACATCGGAACTACGACTCAGCATGCAGAAGGTAAGAGC
i calJac3.chr2                 I 222 C 0
s mm10.chr13                    46093104 247 - 120421639 TGTCTATGCTTTCCAAACTCCTGGAATGGCTATTATATA-ATTTGAGTGGCATTCACAATCTTTCTTTTTTTCCCCCATAAGTGATTTCCCCCATATGTTAAATTCTGGCTTTCTT-------------T------TAAGGAGATAAAGTTCCTTCAATTAAGGCAAATGCTGGAGAAGAATCGGTTATGAATCTTGACAAGTTGAGATTTGCCGATG---GAAGTATAAGAACATCAGAACTACGCCTAAACATGCAGAAGGTAGGAGC
i mm10.chr13                   C 0 I 746
s canFam3.chr34                 30178118 191 -  42124431 ------------CCAGATT---------------------ATGTGTATG--------------------TTTTCC----AAAC----T---CCAA----TAAATTCTCACTTTTTG-TCTGTGTGTTTTT------TAAGGAGATAAAATTCCCCCGATTAAACCAAATGCCGGGGAAGAGTCTGTCATGAATCTTGACAAACTGAGATTTGCCAATG---GAAGTGTAAGAACATCTGAACTACGACTCAACATGCAGAAGGTAAGCC-
i canFam3.chr34                C 0 C 0

a score=170949.000000
s hg38.chr3_KI270935v1_alt         48353 52 +    197351 CTGGACTCGCTCTGGAGTGAGCAGGCTGGCTGCATACCTGGCCCTGCACT----GG
s panTro4.chr3_GL389630_random     12853 52 +    103936 CTGGACTCGCTCTGGAGTGAGCAGGCTAGCTGCATACCTGGCCCTGCACT----GG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199695041 52 + 202140232 CTGGACTCGCTCTGGAGAGAGCAGGCTGGCTGCATACCTGGCCCTGCACT----GG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120793620 52 + 123690457 CTGGTCTCGCTCTGGAGTGAGCAGGCGGGCTGCATACCTGGCCCTGCACT----GG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     14036 52 + 180491593 CTGGACTCGCTCTGGAGTGAGCAGGCTGGCTGCATACCTGGCCCTGCACT----GG
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180279095 52 - 181584905 CTGGACTCGCTCTGGAGTGAGCAGGCTGGCTGCATACCTGGCCCTGCACT----GG
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173167456 52 - 174439528 CTGGACTCGCTCTGGAGTGAGCAGGCTGGCTGCATACCTGGCCCTGCact----gg
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89613872 52 -  91010382 CTGGACTCACTCTGGAGTGAGCAGGCTGGCTGCATACCTGGCCCTGCACT----GG
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    157296 51 - 204313951 CTGG-CTCACTCTGGAGCAAACAG----GCTGTGTGCCTGGCCCTGCACTGCTGGG
i calJac3.chr2                 C 0 C 0
s canFam3.chr34                 30178309 50 -  42124431 CTGCACACGCTCTGGAGTGTGCAGGCTG--TGTGTCCATAGCCTTATGCT----GG
i canFam3.chr34                C 0 I 752
e mm10.chr13                    46093351 746 - 120421639 I

a score=177470.000000
s hg38.chr3_KI270935v1_alt         48405 70 +    197351 ttt------tgtttttttaaaaacagatctagggggatgcaggtgcagctttgtgtggatg----tactgggaggtggtg
s panTro4.chr3_GL389630_random     12905 70 +    103936 ttt------tgtttttttaaaaacagatctagggggatgcaggtgcagttttgtgtggatg----tactgggaagtggtg
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199695093 70 + 202140232 ttt------tgtttttttaaaaatagatctagggggatgcaggtgcagttttgtgtggatg----tactgggaggtggtg
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120793672 73 + 123690457 ttt------tg-ttttttaaaaatagatttagggggatgcaggtgcagttttgtgtggatgtttttactgtgatgtggtg
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     14088 69 + 180491593 ttt------tgtttttttaaaaatagatttagggggatgcaggtgcag-tttgtgtggatg----taccatgaggtggtg
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180279147 69 - 181584905 ttt------tgtttttttaaaaatagatttagggggatgcaggtgcag-tttgtgtggatg----taccatgaggtggtg
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173167508 69 - 174439528 ttt------tgtgtttttaaaaatagatttagggGGATGCAGGTGCAG-TTTGTGTGGATG----TACCGTGAGGTGGTG
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89613924 69 -  91010382 ttt------tgtttttttaaaaatagatttagggggatgcaggtgcag-tttgtgtggatg----taccgtgaggtggtg
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    157347 69 - 204313951 ttttctgtgtgtttttattttaatagatttagggg--tacaggtgcagttttgtgtggatg----tact-----gtggtg
i calJac3.chr2                 C 0 I 342
e mm10.chr13                    46093351 746 - 120421639 I
e canFam3.chr34                 30178359 752 -  42124431 I

a score=1129071.000000
s hg38.chr3_KI270935v1_alt         48475 446 +    197351 gagtctgggcttttcatgtacctgtcacccaagtcgtgtgtgttgtactcagcaggtaattgctcatccccacccctcccgctttttggagcccacagtct----------gttagtccactccgtgtgtccatgtgtactcaccgttcagctcccacttccaagggagaatgtgtgacacttgaccttctga-----ctcacttaggatagtgacctcccattccatccgtctggctgcagaagacatgattgcattc-ttttttt-atggccaagtagtatttcatggtatatat----gtaccacattttctttatccggtcgtccgttgatgggcacttaggttgattccatgactttgctattgtgactagtgctgcaataaacatacgagGCTGCACCAGTATGTGGAGGTAAACAGCAGTAGGACATACTCCTCACTGTATCAAGAATATGAAAGAGAC------------------C
s panTro4.chr3_GL389630_random     12975 457 +    103936 gagtctgggcttttcatgtacccgtcacccaagtcgtgtgtgttgtactcagcagataattgctcatccccacccctcccgctttttggatcccccagtct--------ctgttagtccactccgtgtgtccatgtgtactcaccgttcagctcccacttccaagggagaatgtgtgacacttgaccttctgagtcacttcacttaggatagtgacctcccgttccatccgtctggctgcagaagacatgattgcgttc-ttttttttatggctgagtagtgtttcatggtatatatatatgtaccacattttctttatccggtcatccgttgatgggcacttaggttgattccatgactttgctattgtgaccagtgctgctataaacatacgaggctgcaccagtatctG-AGGTGAACAGCAGTAGGACATACTCCTCACTGTATCAAGAATATGACAGAGAC------------------C
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199695163 446 + 202140232 gagtctgggcttttcatgt-------acccaagtcgtgtgtgttgtactcagcaggtaattgctcatccctacccctcccgctttttggagctcccagtct--------ctgttagtccactccgtgtgtccatgtgtactcacggttcagctcccacttccaagtgagaatgtgtgacacttgaccttctgagtcacttcacttaggatagtgacctcccgttgcatccgtgtggctgcagaagacatgattatgttg-ttttttt-atggctgagtagtatttaatggtatatag----gtaccacattttcttcatctggtcgtccgttgatgggcacttaggttgattccatgattttgctattgtgactagtgctgcgataaacatacgaggctgcaccagtatctGGAGGTGAACAGCAGTGGGACATACTCCTCACTGTATCAAGAACATGAAAGAGAC------------------C
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120793745 453 + 123690457 gagtctgggcttttcatgtacccatcacccaagtcgtgtgtgttgtacccagcaggtaattgctcatccctacccctcccgctttttgaagcccccagtctgttccagtctgttagtccactccgtgtgtccaggtgtactcaccgttcagcgcccacttc-------aagtgagtgacacttgaccttctgagtcacttcacttaggatagtgacctccggttccatccgtgtggctgcagaagacatgattgcgttc-ttttttt-gtggctgagtagtatttcatggtatatat----gtaccacattttcttcatccggtcgtccgttgatgggcacttaggttgattccatgactttgctattgtgactagtgctgcaataaacatatgaggctgcaccagtatctGGAGG-AAACAGCAGCAGGATGTGCTCCTCACTGTACCAAGAATATGGAAGAGAC------------------C
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     14157 453 + 180491593 gagtctgggcttttcacat------cacccaagtcatgtatgttgtacccagcaggtaattgctcatccccacccctcccactttttggagcccccagtct--------ctgttagtccactctgtgtggccacgtgtactcaccgttcagtttccacttccaagtaagaat--gtgacacttgacct--tgagtcacttcacttaggagagtga---cctgttccatctgtgtggctgcagaagacatgattgcgtta-ttttttt-atggctgagta---tttcatggtgtttat----gtaccacattttctttgtccggtcatccattgatgggcacttaggttgattccatgactttgctattgtgactagtgctgcgataaacatacgaggctgcaccagtatc--GAGGTAAACAGCAGTAGGATGTACTCCTCACTGTATCAAGAATATGAAAGAGACCAGGAGGCCTGAACTATAC
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180279216 439 - 181584905 gagtctgggcttttcacat------cacccaagtcatgtatgttgtacccagcaggtaattgctcatccccacccctcccgctttttggagcccccagtct--------ctgttagtccactccgtgtggccacgtgtactcaccattcagctcccactt-caagtgagaat--gtgacacttgaccttctgagtgacct------------------cctgttccatccacatggctgcagaagacatgattgcgtta-tttttgt-atggctgagta---tttcatggtgtttat----gtaccacattttctttgtccggtcatccattgatgggcacttaggttgattccatgactttgctattgtgactagtgctgcgataaacatacgaggctgcaccagtatc--GAGGTAAACAGCAGTAGGACGTACTCCTCACTGTATCAAGAATATGAAAGAGACCAGGAGGCCTGAACTATAC
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173167577 454 - 174439528 GAGTCTGGGCTTTTCACGT------CACCCAAGTCATGTATGTTGTACCCAGCAAGTAATTGCTCATCCCCACCCCTCCCGCTTTTTGGAGCCCCCAGTCT--------CTTTTAGTCCACTCCGTGTGGCCACGTGTACTCaccattcagctcccacttccaAGTGAGAAT--GTGACACTTGACCTTCTGAGTCACTT-----AGGATAGTGACCTCCTGTTCCATCCACGTGGCTGTAGAAGACATGAGTGCgttatttttttt-atggctgagta---tttcatggtgtttat----gtaccacattttctttgtccggTCATccgttgatgggcacttaggttgattccatgactttgctattgtgactagtgctgcgataaacatacgAGGCTGCACCAGTATC--GAGGTAAACAGCAGTAGGACGTACTCCTCACCGTATCAAGAATATGAAAGAGACCAGGAGGCCTGAACTATAC
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89613993 446 -  91010382 gagtctgggcttttcatgt------cacccaagtcgtgtatgttgtacccagcagg-------tcatccccacccctcccgctttttggagcccccagtct--------ctgttagtccactccgtgtggccacgtgtactcaccattcagcttccacttccaagtaagaat--gtgacacttgaccttctgagtcactt-----aggatagtgacctcctgttccatccacgtggctgcagaagacatgattgcgtta-ttttttt-atggctgagta---tttcatggtgtttat----gtaccacattttctttgtccggtcatccgttgatgggcacttaggttgattccatgactttgctattgtgactagtgctgcgataaacatacgagGCTCCACCAGTATC--GAGGTAAACAGCAGTAGGACGTACTCCTCACCATATCAAGAATATGAAAGAGACCAGGAGGCCTGAACTATAC
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    157758 426 - 204313951 gagtctgggcttttcgtgtccccatcccccaagttgtatatgttgtacccagtaggtaattgctcatccccacccctcccgctttttggagccccgagtct--------ctattagtctac-ccatatgtccatgtatactcacagttcagctcccacttccaagtcagaatgtgcaacagttgaccttcagagttatttcacttagggtaatgacctcctgttccatccaggtggctgggaaagacacgatctagtt--ctttttt-atgtctgagtagtattccacggtgcatat----gtgccc---------------atcatctgttaatgggcacgtaggtgga----------ttgctgttgtgattggtgctgtgatgaacgtaccaggctgcaccagtatctGGAGGAAAACGGCAGTAGGACATACTCCTTACTGTGTCAAGAATATGAAAGAaat------------------c
i calJac3.chr2                 I 342 I 268
e mm10.chr13                    46093351 746 - 120421639 I
e canFam3.chr34                 30178359 752 -  42124431 I

a score=132626.000000
s hg38.chr3_KI270935v1_alt         48921 59 +    197351 AGAAGTGCACTTCTTCTCCACATAGAAGGTCAGCAGGCCAGGGCAGAATTAGTGACTGC
s panTro4.chr3_GL389630_random     13432 59 +    103936 AGAAGTGCACTTCTTCTCCACATAGAAGGTCAGCAGCCCAGGGCAGAATTAGTGACTGC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199695609 59 + 202140232 AGAAGTGCACTTGTTTTCCACATAGAAGGTCAACAGGCTAGGGCAGAATTAGTGACTGC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120794198 59 + 123690457 AGAAGTGCACTTCTTTTCCACAGAGAAGGTCAGCAGGCTAGGGCAGAATTAGTGACTGC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     14610 56 + 180491593 AGAAGTGCAC---TTTTCCACATAGCAGGTCAGCAGGCTAGGGCAGAACTAGTGACTGC
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180279655 56 - 181584905 AGAAGTGCAC---TTTTCCACATAGAAGGTCAGCAGGCTAGGGCAGAATTAGTGACTGC
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173168031 56 - 174439528 AGAAGTGCAC---TTTTCCACATAGAAGGTCAGCAGGCTAGGGCAGAATTAGTGACTGC
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89614439 56 -  91010382 AGAAGTGCAC---TTTTCCACATAGAAGGTCAGCAGGCTAGGGCAGAATTAGTGACTGT
i chlSab2.chr4                 C 0 C 0
e mm10.chr13                    46093351 746 - 120421639 I
e canFam3.chr34                 30178359 752 -  42124431 I
e calJac3.chr2                    158184 268 - 204313951 I

a score=221740.000000
s hg38.chr3_KI270935v1_alt         48980 70 +    197351 TTAGCATCCAGGACAGCCTTCTGTGGTTCACTCGTGTGTGCTTGGGCATGACCTCCGTGCCCTGACCGTC
s panTro4.chr3_GL389630_random     13491 70 +    103936 TTAGCATCCAGGACAGCCTTCTGTGGTTCACTCGTGTGTGCTTGGGCATGACCGCCGTGCCCTGACCGTC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199695668 70 + 202140232 TTAGCATCCAGGACAGCCTTCTGTGGTTCACTCGTGTGTGCTTGGGCGTGACCTCCGTGCCCTGACCGTC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120794257 70 + 123690457 TTAGCATCCAGGACAGCCTTCTGTGGTTCACTCGTGTGTGCTTGGGCGTGACCTCCGTGCCCTGACCGTT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     14666 70 + 180491593 TTAGCATCCAGGACAGCCTTCTCCGGTTCACTCGTGTGTGCTTGGGCATGACCTCCGTGCCCTGACCGTC
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180279711 70 - 181584905 TTAGCATCCAGGACAGCCTTCTCCGGTTCACTCGTGTGTGCTTGGGCGTGACCTCCGTGCCCTGACCGTT
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173168087 70 - 174439528 TTAGCATCCAGGACAGCCTTCTCTGGTTCACTCGTGTGTGCTTGGGCGTGACCTCCGTGCCCTGACCGTC
i papAnu2.chr6                 C 0 I 6789
s chlSab2.chr4                  89614495 70 -  91010382 TTAGCATCCAGGACAGCCTTCTCTGGTTCACTCGTGTGTGCTTGGGCGTGACCTCCGTGCCCTGACCGTC
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    158452 70 - 204313951 TCAGCATCCAGGACAGCCTTCTCTGGTTCACTCGAATGTGCCTGGGCATGGCCTCTGTGCTCTGACCATC
i calJac3.chr2                 I 268 C 0
e mm10.chr13                    46093351 746 - 120421639 I
e canFam3.chr34                 30178359 752 -  42124431 I

a score=846340.000000
s hg38.chr3_KI270935v1_alt         49050 391 +    197351 GCTGGCTGTCATGGATGAGTCACAGTGTGGAGGAGAGGGAGCCGCAGGACTGCCGGAGAAGCTCCGTCCCCagcagggcagctttctcttag-aggtttcctggagttcaacacaacactggtgcttacatctcaggcccagatattgatcatgtcatcatgcctggcttccagcagctcggaaacgtctttaAGCTAGACCTGTTGCTGCCCCTAAATATACTCAGCAGAGAGGGAGAGTGGGCGGCAGGTGGACAGTGATCTGTGCGGCCTGTGCTGCTGGGAGTCG------------------gtccagtaggaccgtctgtgatgatggaaatgtt--gagtgtttgccgtccagtatggcagccattagccat---ggggccgtggagaacctgatatatagtcagtct
s panTro4.chr3_GL389630_random     13561 391 +    103936 GCTGGCTGTCATGGATGAGTCACAGCGTGGAGGAGAGGGAGCCGCAGGACCGCCGGAGAAGCTCTGTCCCCAGCAGGGCAGCTTTCTCTTAG-AGGTTTCCTGGAGTTCAACACAACACTGGTGCTTACATCTCAGGCCCAGATATTGATCATGTCATCATGCCTGGCTTCCAGCAGCTCGGAAACGTCTTTAAGCTGGACCTGTTGCTGCCCCTAAATATACTCAGCAGAGAGGGAGAGTGGGCGGCGGGTGGACAGTGATCTGTGCGGCCTGTGCTGCTGGGAGTCG------------------gtccagtaggaccgtctgtgatgatggaaatgtt--gagtgtttgccatccagtatggcagccattagccat---ggggccgtggagaacctgatatatggtcagtct
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199695738 374 + 202140232 GCTGGCTGTCATGGATGAGTCACAGCGT------------------GGACCACCAGAGAAGCTCAGTCCCCagcagggccgctttctcttag-aggtttcctggagttcaacacagcactggtgcttacatctcaggcccagatactgatcatgtcatcacgcctggcttccagcagctcggaaatgtctttaagctggACCTGTTGCTGCCCCTAAACATACTCAGAAGAGAGGGAGAGTAGGCGGTGGGTGGAAAGTGATCTGTGCGGTCTGTGCTGCTGGGAGTCA------------------gtccagtaagaccgtctgtgatgatggaaatgtt--gagtgtttgccgtccagtatggcagccattagccac--gggggctgtggagaacctgatatatagtcagtct
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120794327 391 + 123690457 GCTGGCTGTCATGGATGAGTCACAGCGTGGAGGAGAGGGAGCCACAGGACCACCGTAGAAGCTCAGTCCCCAGCAGGGCAGCTTTCTC--AG-AGGTttcctggagttcaacacaacactggtgcttacatctcaggcccagatattgatcatgtcatcacgcctggcttccagcagctcggaaatgtctttaagctggACCTGTTGCTGCCCCTAAATATACTCAGAAGAGAGGGAGAGTGGGCGGCGGGTGGAAAGTGATCTGTGCTGCCTGTGCTGCTGGGAGTCG------------------gtccagtaggaccgtctgtgatgatggaaatgtt--gagtgtctgccgtccagtatggcagccattagccac-agggggctgtggagaacctgatatatagtcagtct
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     14736 396 + 180491593 GCAGGCTGTCATGGATGAGTCACAGCGTGGAGGAGAGGGAGCAGCAGGACCGCGGGAGAAGCTCAGTCCCCAGCAGGGCAGCTTTCTCTTCGCAGGTTTCCTGGAGTTCAACATAATACTGGTGCTTACATCTCAGGCCCACATATTGATCATGTCATCATGCCTGACTTCCAGCAGCTTGGAAATGTCTTTAAGCTGGGCCTGTGGCTGCCCCTGAATATACTCAGAAGAGAGGGAGAGTGGGCGGTGGGTGGAAACTGATGTGTGCAGCCTGTGCTGCTGGGAGTCG------------------gtccagtgggaccgtctgtgacgatggaaatgttccgagtgtttgccgtccagtatggcagccattagccac-agagggctgtggagaacttgatatatagtcagtct
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180279781 396 - 181584905 GCAGGCTGTCATGGATGAGTCACAGCGTGGAGGAGAGGGAGCAGCAGGACCACGGGAGAAGCTCAGTCCCCAGCAGGGCAGCTTTCTCTTTGCAGGTTTCCTGGAGTTCAACACAATACTGGTGCTTATATCTCAGGCCCACATATTGATCGTGTCATCATGCCTGACTTCCAGCAGCTTGGAAATGTCTTTAAGCTGGGCCTGTGGCTGCCCCTGAATATACTCAGAAGAGAGGGAGAGTGGGCAGCAGGTGGAAACTGATGTGTGCGGCCTGTGCTGCTGGGAGTCG------------------gtccagtgagaccgtctgtgacgatggaaatgttccgagtgtttgccgtccagtatggcagccattagccac-agagggctgtggagaacttgatatatagtcagtct
i macFas5.chr6                 C 0 C 0
s chlSab2.chr4                  89614565 396 -  91010382 ACGGGCTGTCATGGATGAGTCACAGCGTGGAGGAGAGGGAGCAGCAGGACTGCCGGAGAAGCTCAGTCCCCAGCAGGGCAGCTTTCTCTTAGCAGGTTTCCTGGAGTTCAACATAATACTGGTGCTTACATCTCAGGCCCACATATTGATCATGTCATCATGCCTGGCTTCCAGCAGCTTGGAAATGTCTTTAAGCCGGGCCTGTGGCTGCCCCTGAATATACTCAGAAGAGAGGGAGAGTGGGCGGTGGGTGGAAACTGATGTGTGCGGCCTGTGCTGCTGGGAGTCG------------------gtcccataggaccgtctgtgacgatggaaatgttccgagtgtttgccgtccagtgtggcagccattagccac-agagggctgtggagaacttgatatatagtcagtct
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    158522 382 - 204313951 ACTGGCTGTCGTGGATGAGTCACAGTGTGGAGGAGATGGAGCCGCAGGGC-GCCTGAGAAGCTcagtccccagcagagc-------------------------------acacaacactggtgcttacatctcagg-ccagatagtgaccatgtcatcacacctggcttccagcagctcggaaatgtctttaagctgggCCTGTTGCTGCCCCTAAATATACTCAGAAGAGGGGGAGAGTGGGCCGTGGGTGGAAACTGATCTCTGCAGCCTGTGCTTCTGGGAGTCAGCCTCCCACATcaggactgtccaataggactgcccgtgatggcagaaatgttccaagtctttgccgtccagtatggcaaccactagccacgggagggctatggagaacttggtatatagtcagtct
i calJac3.chr2                 C 0 I 146
e mm10.chr13                    46093351 746 - 120421639 I
e canFam3.chr34                 30178359 752 -  42124431 I
e papAnu2.chr6                 173168157 6789 - 174439528 I

a score=11284.000000
s hg38.chr3_KI270935v1_alt         49441 5 +    197351 aagaa
s panTro4.chr3_GL389630_random     13952 5 +    103936 aagga
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199696112 5 + 202140232 aagaa
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120794718 5 + 123690457 aagaa
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     15132 5 + 180491593 gagaa
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180280177 5 - 181584905 aagaa
i macFas5.chr6                 C 0 C 0
s chlSab2.chr4                  89614961 5 -  91010382 aagaa
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    159050 5 - 204313951 aAGAA
i calJac3.chr2                 I 146 C 0
e mm10.chr13                    46093351 746 - 120421639 I
e canFam3.chr34                 30178359 752 -  42124431 I
e papAnu2.chr6                 173168157 6789 - 174439528 I

a score=405189.000000
s hg38.chr3_KI270935v1_alt         49446 175 +    197351 actcaattCCTCTAATAACAAGGATTCTT-GTCCATGAATGAGATCTCTTGTCTGCT-------ATTTGCAAGAATTTCTGCGTA----TTTTCTAGAAA---GAAGTCCACTGCTTTAGTCCTATTCTGAAAGGCATTTGGTGTT--------AGACAC-----------AAGAGAACAGGTTCCCTGCTG-ACAATTTTCAGAGGCCC
s panTro4.chr3_GL389630_random     13957 174 +    103936 actgacttCCTCTAATAACAAGGATTCTT-GTCCATGAATGAGATCTCTTGTCTACT-------ATTTGCAAGAATTTCTGCGTA----TTTTCTAGAAA---GAAGTCCACTGCTTTAGTCCTATTCTGAAAGGCATTTGGTGTT--------AGACAC-----------AAGAGAACAGGTACCCTGCTG-ACA-TTTTCAGAGGCCC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199696117 174 + 202140232 actgaattCCTCTAATAACAAGGATTCTT-GTCCAAGAATGAGATCTCTTCTCTACT-------ATTTGCATGAATTTCTGTGTA----TTTTCCAAAAA---GAAGTCCATTGCTTTAGTCCTATTCTGAAAGGCATTTGGTGTT--------AGACAC-----------GAGAGAACAGGTTCCCTGCTG-ACA-TTTTCAGAGGCCT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120794723 174 + 123690457 actgaattCCTCTAATAACAAGGATTCTT-GTCCAAGAATGAGATCTCTTGTCTACT-------ATTTGCAAGAATTTCTGCATA----TTTTCTGAAAA---GAAGTCCATTGCTTTAGTCGTATTCTGAAAGGCATTTGGTGTT--------AGACAC-----------AAGAGAACAGGTTCGCTGCTG-ACA-TTTTCAGAGGCCT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     15137 175 + 180491593 actgaattCCTCTAATAACAAGGATTCTT-GTCCATGAATGAGATCTCTTGTCTACT-------ATTTGCAAGAATTTCTGCGTA----TTTTCTAAAAA---GAAGTCCATTGCTTTAGTCCTATTCTGAAAGGCGTTTGGTGTTA-------AGACAC-----------AAGAGAACAGGTTCCCTGCTG-ACA-TTTTCAGAGGCCT
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180280182 175 - 181584905 actgaattCCTCTAATAACAAGGATTCTT-GTCCATGAATGAGATCTCTTGTCTACT-------ATTTGGAAGAATTTCTGCATA----TTTTCTAAAAA---GAAGTCCATTGCTTTAGTCCTATTCTGAAAGGCGTTTGGTGTTA-------AGACAC-----------AAGAGAACAGGTTCCCTGCTG-ACA-TTTTCAGAGGCCT
i macFas5.chr6                 C 0 C 0
s chlSab2.chr4                  89614966 175 -  91010382 actgaattCCTCTAATAACAAGGATTCTT-GGCCATGAATGAGATCTCTTGTCTACT-------ATTTGCAAGAATTTCTGCGTA----TTTTCTAAAAA---GAAGTCCATTGCTTTAGTCCTGTTCTGAAAGGCGTTTGGTGTTA-------AGACAC-----------AAGAGAACAGGTTCCCTGCTG-ACA-TTTTCAGAGGCCT
i chlSab2.chr4                 C 0 I 156
s calJac3.chr2                    159055 177 - 204313951 ACTGAGTTCCTCTAATAACAAGGATTCTT-GTTCATGAATGAGGTCTCTTGTTTACT-------ATTAGCAAGAATTTCCGTGAA----TATTT--GTAA---AAAGTCCA-TGCTTTTGTCCTATTCC-AAAGGCATTTGGTGTTGCAGACACAGACAC-----------AAGAGCAAAGGTTC-CTGCTG-ACA-TTGTCAGAGGCCT
i calJac3.chr2                 C 0 C 0
s canFam3.chr34                 30179111 190 -  42124431 ACCAGATTCTTCTAAT-ACAGGGATTCTTGGTCCACAAATGAGATCTC-TGTCCAGTTGAAGTCATTTGCAAG-ATTTCTGTGGAGACGTTTTCCGAAAAGAGGAAGTCCCT---TTTAGTTCTATCCTGAA--GCGTCCAGTGGC--------ACAAACTCTAATCATCAAAAGAAAAAAGTTGCATACTGCATA-CTTCTGTAGG---
i canFam3.chr34                I 752 C 0
e mm10.chr13                    46093351 746 - 120421639 I
e papAnu2.chr6                 173168157 6789 - 174439528 I

a score=244611.000000
s hg38.chr3_KI270935v1_alt         49621 105 +    197351 GTGCCCTTCGGTCTTCAGGTGAG-GCTGGGCTTGAGGGAGGTTTTGTGGAACGGTGAGAAGAACAGCGTGACTAAGGCACAGAAG-----------------GCTGAGTGATGCCCTGCAGTG
s panTro4.chr3_GL389630_random     14131 105 +    103936 GTGCCCTTCAGTCTTCAGGTGAG-GCTGGGCTTGAGGGAGGCTTTGTGGAACGGTGAGAAGAACAGCGTGACTAAGGCACAGAAG-----------------GCTGAGTGATGCCCTGCAGTG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199696291 105 + 202140232 GTGCCCTTCAGTCTTCAGGTGAG-GCTGGGCTTGAGGGAGGCTTTGTGGAACGGTGAGAAGAACAGCGTGACTAAGGCACAGAAG-----------------GCTGAGTGATGCCCTGCAGTG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120794897 105 + 123690457 GTGCCCTTCAGTCTTCAAGTGAG-GCTGGGCTTGAGGGAGGCTTTGTGGAAAGGTGAGAAGAACAGCGTGACTAAGGCACAGAAG-----------------GCTGAGTGATGCCCTGCAGTG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     15312 105 + 180491593 GTGCCCTTCAGTCTTGAAGTAAG-ATTGAGCTTGAGGGAGGCTTTCTGGAACGGTGAGAAGAATAGCGTGATTAAGGCACAGAAG-----------------GCTGAGTGATGCCTTGCAGTA
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180280357 102 - 181584905 GTGCCCTTCGGTCTTCAAGTGAG-GCTGGGCTTGAAGGAGGCTTTGTGGAACGGTG---AGAACGGTGTGACTAAGGCACGGAAG-----------------GCTAAGGGATGCCCTGCAGTA
i macFas5.chr6                 C 0 C 0
s chlSab2.chr4                  89615297 105 -  91010382 GTGCCCTTCAGTCCTGAAGTGAG-GCTGGGCTTGAGGGAGGCTTTGTGGAACGGTGAGAAGAACAGCGTGACTAAGGCACAGAAG-----------------GCTAAGGGATGCCCTGCAGTA
i chlSab2.chr4                 I 156 C 0
s calJac3.chr2                    159232 102 - 204313951 GTGCACTTCATTCTTCAAGTGAG-GCTGGGCTTGAGAGAGGCTTTGTGGAATGCTG---AGAACAGCATGACTAAGGCCCAGAAG-----------------GCTGAGGGATATCCTGCAGGA
i calJac3.chr2                 C 0 I 132
s canFam3.chr34                 30179301 113 -  42124431 ----------AACTTCAGAGAAGTTCTGGGCTTTAGGGAAACTTCCTGGAAAGGTAAGGCGAATAGTGCGAGTGAAAGGCAGAGGTTTGTTTTAGGAAACCAGCCAAGAGGAACTGAGCAGAA
i canFam3.chr34                C 0 C 0
e mm10.chr13                    46093351 746 - 120421639 I
e papAnu2.chr6                 173168157 6789 - 174439528 I

a score=480013.000000
s hg38.chr3_KI270935v1_alt         49726 205 +    197351 CTTTTGTAGGGT---------------TGGAGGCCAGCTGGGAAAGAAGGAACCCTTGCGTTAGAGAATGGGAACATGCCTTAGGATATAGAAATGGCAAATC--TGAGATAGTTTGAAGTGAGAA-TACTAGAAGTGTTCCCACCAaacaaggtgtgtcttggtgcctgctgtatcccaggctccgtgaggtgccggagtcagcactgaacaaacagagctt
s panTro4.chr3_GL389630_random     14236 205 +    103936 CTTTTGTAGGGT---------------TGGAAGCCAGCTGGGAAAGAAGGAACCCTTGCATTAGAGAATGGGAACATGCCTTAGGATAGAGAAATGGCAAATC--TGAGATAGTTTGAAGTGAGAA-TACTAGAAGTGTTCCCACCAAACAAGGTGTGTCTTCgtgcctgctgtatcccaggctccgtgaggtgccggagtcagcactgaacaaacagagctt
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199696396 205 + 202140232 CTTTTGTAGGGT---------------GGGAGGGCAGCTGGGAAAGAAGGAACCAGTGCATTAGAGAACGCGAACACGACTTCGGATATAGAAATGGCAAATC--TGAGATGGTTTGAAGTGAGAA-TACTAGAAGTGTTCCCGCCAaacaaggtgtgtcttggtgcctgctgtatcccagactccgtgaggtgctggagtcagcactgaacaaacagagctt
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120795002 205 + 123690457 CTTTTGTAGGGT---------------TGGAGGCCAGCTGGGAAAGAAGGAACCATTGCATTAGAGAATGGGAACAGGCCTTAGGATATAGAAATGGCAAATC--TGAGATAGTTTGAAGTGAGAA-TACTAGAAGTGTTCCCACCAaacaaggtgtgtcttggtgcctgctgtatcccaggctccgtgaggtgctggagtcggcactgaacaaacagagctt
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     15417 207 + 180491593 CTTTTGTAGGGT---------------TGGAGGCCAGCTGTGAGAGAAGGAACCATTGTATTAGAGAATGGGAACATGCCTTAGGATACAGAAATGGCAAATCCGTGAGACAGTTTGAAGTGAGAA-TACTAGAAACattctcaccaaacaaggtgtgtcttggtgcctgctgtatcgcaggctccgtgagatgctggagtcagcactgaacaaacagagctt
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180280459 207 - 181584905 CTTTTGTAGGGT---------------TGGAGGCCAGCTGTGAGAGAAGGAGCCATTGCATTAGAGAATGGGAACATGCCTTAGGATACAGAAATGGCAAATCCGTGAGACAGTTTGAAGTGAGAA-TACTAGAAACattctcaccaaacaaggtgtgtcttggtgcctgctgtatcgcaggctccgtgagatgctggagtcagcactgaacaaacagagctt
i macFas5.chr6                 C 0 C 0
s chlSab2.chr4                  89615402 201 -  91010382 CTTTTGTAGGGT---------------TGGAGGCCAGCTTTGAGAGAAGGAACCATTGCATTAGAGAATGGGAACATGCCTTAGGATACAGAAATGGCAAATCCGTGAGACAGTTTGAAGTGAGAA-TACTAGAAACattctcaccaaacaaggtgtgtcttggtgcctgctgtatcgcaggctccgtgagatgctggagtcagcactgaacaaaCA------
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    159466 196 - 204313951 CTTTTGTAGGGT---------------TGGAGGCCAGCTAGGAAAGAAGGAATCATTGCACTAGAGAATGGGAAGGTGCCTTAGGATGTAGAAATGGCAAATTCATGAGATATTTTGAAGTGAGAA-TACTAGAAGCATTCCCACCAAACAAGGTGTGT-----------ctgtatgctaggctctgtgagatgctggagtcagcactgaacaaacagaagtt
i calJac3.chr2                 I 132 C 0
s canFam3.chr34                 30179414 166 -  42124431 CTTTTGCAGGGTATTGATACCGGGGAATGGCCACCAGCTACGACAGATATAATCCTTGCACTATATAGTAGGAAATTCTATTTGGGTGTGGAAATGATGAACC--CATGATATTTTGAAATGGGAAGTCCTAGAAACATTTCCACCAAGTAAGGC-------------------------------------------------------ACATACAGAtctt
i canFam3.chr34                C 0 I 209
e mm10.chr13                    46093351 746 - 120421639 I
e papAnu2.chr6                 173168157 6789 - 174439528 I

a score=148482.000000
s hg38.chr3_KI270935v1_alt         49931 74 +    197351 cctatgcttgcgg-aaatgcatttcgttgggggaagGGATTTTTCTGCTGACTCTGGCTATTAATAGTAACA--ATC
s panTro4.chr3_GL389630_random     14441 74 +    103936 cctaagcttgcag-aaatgcatttcgttgggggaAGGGATTTTTCTGCTGACTCTGGCTATTAATAGTAACA--ATC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199696601 74 + 202140232 ccgatgcctgTGG-AAATGTGTTTCCTTGGGGGAAGGGATTTTTCTGCTGACTCTGGCTATTAATAGTAACA--ATC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120795207 75 + 123690457 cctgtgcttgtgg-aaatgcgtttcgtt-ggggaagGGATTTTTCTGCTGACTCTGGCTATTAATAGGTACATtgtt
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     15624 74 + 180491593 cctgtgcttgtgg-aagtgcgtttcgttgggggaagGGATTTTTCTGCTGACTCTGGCTATTAATAGTAAGA--ATC
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180280666 74 - 181584905 cctgtgcttgtgg-aagtgcgtttcgttgggggaagGGATTTTTCTGCTGACTCTGGCTATTAATAGTAAGA--ATC
i macFas5.chr6                 C 0 C 0
s chlSab2.chr4                  89615603 71 -  91010382 ---GTGCTTGTGG-AAATGCGTTTCGTTGGGGGGAGGGATTTTTCTGCTGACTCTAGCTATTAATAGTAAGA--ATC
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    159662 71 - 204313951 cccatgctcgtggaaaatgcatttcattgg----aggaaTTTttgtgctgactctggctattaatagtaaga--att
i calJac3.chr2                 C 0 C 0
e mm10.chr13                    46093351 746 - 120421639 I
e canFam3.chr34                 30179580 209 -  42124431 I
e papAnu2.chr6                 173168157 6789 - 174439528 I

a score=24460.000000
s hg38.chr3_KI270935v1_alt         50005 15 +    197351 aaaaaaagaaatgag
s panTro4.chr3_GL389630_random     14515 15 +    103936 aaaaaaagaaatgag
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199696675 15 + 202140232 aaaaaaagaaatgag
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120795282 12 + 123690457 ggaaacaggccc---
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     15698 15 + 180491593 AAAAAAAGAAATGAG
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180280740 15 - 181584905 AAAAAAAGAAATGAG
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173174946 15 - 174439528 AAACAAAGAAGGGGG
i papAnu2.chr6                 I 6789 C 0
s chlSab2.chr4                  89615674 15 -  91010382 AAAAAAAGAAATGAG
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    159733 11 - 204313951 ----aaaaacatgag
i calJac3.chr2                 C 0 C 0
e mm10.chr13                    46093351 746 - 120421639 I
e canFam3.chr34                 30179580 209 -  42124431 I

a score=65063.000000
s hg38.chr3_KI270935v1_alt         50020 40 +    197351 gtaaattgatagaaacaggcccccaaatgtggccataaac
s panTro4.chr3_GL389630_random     14530 40 +    103936 gtaaattgttagaaacaggcccccaaatgtggccataaac
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199696690 40 + 202140232 gtaaattgttaggaataggcccccaaatgtggccaaaagc
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120795294 24 + 123690457 gtacattgttggaaacaggccccc----------------
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     15713 39 + 180491593 GTAAATTGTTGGGaacaggcccccaaa-ctggccataaac
i rheMac3.chr6                 C 0 I 351
s macFas5.chr6                 180280755 40 - 181584905 GTAAATtgttgggaacaggcccccaaatctggccataaac
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173174961 37 - 174439528 aca---tgttgggaacaggccccccagtgtggccataaac
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89615689 40 -  91010382 GTAAATtgttgggaacaggcccccaaatctggccataaac
i chlSab2.chr4                 C 0 C 0
e mm10.chr13                    46093351 746 - 120421639 I
e canFam3.chr34                 30179580 209 -  42124431 I
e calJac3.chr2                    159744  0 - 204313951 C

a score=202759.000000
s hg38.chr3_KI270935v1_alt         50060 118 +    197351 tggccccaaaactggccataaacaaaatctctgcagca-tgtgacgtgctcgtgatggccaggacgaccacgcaggaaggttatgggtttaccgtaatgagggcaaggaacacctggcc
s panTro4.chr3_GL389630_random     14570 118 +    103936 tggccccaaaactggccataaacaaaatctctgcagca-tgtgacatgctcgtgatggccatgacgcccacgctggaaggttatgggtttaccgtaatgagggcaaggaacacctggcc
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199696730 118 + 202140232 tggccccaaaactggccataaacaaaatctctgcagca-tgtgacatgctcgtggtggccatgacacccacgccggaaggctgagggtttactggaatgagggcaaggaacacctggcc
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120795318 117 + 123690457 --tccccaaaactggccataaacaaaatctctgcagcactgtgacatgctcatgatggccatgacgcccgtgccagaaggttgtgggtttaccataatgagggcaaggaacacttggcc
i nomLeu3.chr11                C 0 C 0
s macFas5.chr6                 180280795 119 - 181584905 tggccccaaaactggccataaacaaaatctctgcagcactgtgacgtgctcgtgatggccatgacgcccacgctggaaggctgtcagtttactggaatgagggcaaggaacacctggcc
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173174998 119 - 174439528 tggcccccaaactggccataaacaaaatctctgcagcgcTGTGACGTGCTCGTGATGGCCATgacgcccacgctggaaggttgtgggtttaccagaatgagggcaaggaacacctggcc
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89615729 119 -  91010382 tggccccaaaactggccataaacaaaatctctgcagcactgtgacatgctcgtggtggccatgacacccacgctggaaggctgtcagtttactggaatgagggcaaggaacacctggcc
i chlSab2.chr4                 C 0 C 0
e rheMac3.chr6                     15752 351 + 180491593 I
e mm10.chr13                    46093351 746 - 120421639 I
e canFam3.chr34                 30179580 209 -  42124431 I
e calJac3.chr2                    159744   0 - 204313951 C

a score=169578.000000
s hg38.chr3_KI270935v1_alt         50178 107 +    197351 cacccagagtgga-aaacctcttaag-------------accttcttaaaccacaaacaatagcatg----agcgctct-gtgccttaaggacatgctcctgctgcagataactagccagacccat
s panTro4.chr3_GL389630_random     14688 107 +    103936 cacccagagcgga-aaacctcttaag-------------acgttcttaaaccacaaacaatagcatg----agcaatct-gtgccttaaggacatgctcctgctgcagataactagccagacccat
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199696848 108 + 202140232 cacccaggggggagaaacctcttaag-------------gcgttcttaaaccacaaacaatagcatg----agtgatct-gtgccttaaggacatgctcctgctgcagataactagccagacccat
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120795435 120 + 123690457 cacccagagcaga-aaacctcttaaggcagtcttaaaccacagtcttaaaccacaaacagtagcatg----agcgatct-gtgccttaaggacatgctcctgctgcagataactagccagacccat
i nomLeu3.chr11                C 0 C 0
s macFas5.chr6                 180280914 106 - 181584905 cacccagagtgga-aaaccgcttaag-------------tgtttcttaaaccacaaacagtagcatg----agcgatct-gtg-cttaaggacgtgtgcctgctgcagataactagccagacccat
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173175117 107 - 174439528 cacccagggcgga-aaaccacTTAAG-------------gggttcttaaaccacaaacagtagcatg----agcgatct-gtgccttaaggacatgttcctgctgcagataactagccagacgcat
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89615848 106 -  91010382 cacccagggcgga-aaaccgcttaag-------------ggtttcctaaaccacaaacagtagcatg----agcaatct-gtg-cttaagaacatgttcctgctgcagataactagccagacccat
i chlSab2.chr4                 C 0 C 0
s canFam3.chr34                 30179789  96 -  42124431 tactcaaagtgaa-aaac------aa-------------tgattgtatgagtgcagatggttgtttaccctcgggatctagtg------ggagctacagctgctgc----cactgcctggagtcat
i canFam3.chr34                I 209 I 227
e rheMac3.chr6                     15752 351 + 180491593 I
e mm10.chr13                    46093351 746 - 120421639 I
e calJac3.chr2                    159744   0 - 204313951 C

a score=228163.000000
s hg38.chr3_KI270935v1_alt         50285 144 +    197351 ccctttatttcctgtaaggaatactttcagtaagtcttatc---actggcttgctgtcaataaatacgtgggtaaatctctgtttgaggcttttggctctgaaggctgtgagacccctgatttcccactccacactctatatttctg
s panTro4.chr3_GL389630_random     14795 144 +    103936 ccctttatttcctgtaaggaatacttttagtaagtcttatc---actggcttgctgtcaataaatacgtgggtaaatctctgttcaaggctcttggctctgaaggctgtgagacccctgatttcccactccacactctatatttctg
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199696956 141 + 202140232 ccctttatttcccataagcaatacttttagtaagtcttatc---actggcttgctgtcaataaataagtgggtaaatctctgttcgaggctctcggctctgaaggctgtgaga-ccgtgatttccaactccatactgtatatttc--
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120795555 143 + 123690457 ccctttatttcctgtaaggaatgcttttagtaagtcttatc---actgtcttgctgtcagtaaatacgtgggtaaatctctgttcaagtctctcagctctgaaggctgtgaga-ccccgatttcccactccacactctatatttctg
i nomLeu3.chr11                C 0 C 0
s macFas5.chr6                 180281020 144 - 181584905 ccctttgtttcccgtaaggaatacttttagtaaatcttatg---actggcttgttgtcagtaaatatgtgagtaaacctctgtttgaggctctcagctctgaaggctgtgagaccccagatttcccaccccacgcgctatatttctg
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173175224 146 - 174439528 ccctttgtttcccgtaaggaatacttttagtaaaTCTTATAGTCATAAGCTTgttgtcaataaatatgtgagtaaatctctgttcgaggctctcagctctgaaggctgtgagacccctgatttcccactccacatgctat-tttctg
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89615954 144 -  91010382 ccctttgtttcccataaggaatacttttagtaaatcttatg---actggcttgttgtcagtaaatacgtgggtaaatctctgttcgaggctctcagctctgaaggctgtgagatccctgatttcccaccccacgcgctatatttctg
i chlSab2.chr4                 C 0 C 0
e rheMac3.chr6                     15752 351 + 180491593 I
e mm10.chr13                    46093351 746 - 120421639 I
e canFam3.chr34                 30179885 227 -  42124431 I
e calJac3.chr2                    159744   0 - 204313951 C

a score=44184.000000
s hg38.chr3_KI270935v1_alt         50429 18 +    197351 tgtgtgtgtctttacttc
s panTro4.chr3_GL389630_random     14939 18 +    103936 tgtgtgtgtctttaattc
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199697097 16 + 202140232 --tgtgtgtctttaattc
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120795698 18 + 123690457 tgtgtgtgtctttaattc
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     16103 18 + 180491593 tgtgtgtgtctttaattc
i rheMac3.chr6                 I 351 C 0
s macFas5.chr6                 180281164 18 - 181584905 tgtgtgtgtctttaattc
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173175370 18 - 174439528 tgtgtgtgtctttaattc
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89616098 18 -  91010382 tgtgtgtgtctttaattc
i chlSab2.chr4                 C 0 C 0
e mm10.chr13                    46093351 746 - 120421639 I
e canFam3.chr34                 30179885 227 -  42124431 I
e calJac3.chr2                    159744  0 - 204313951 C

a score=78448.000000
s hg38.chr3_KI270935v1_alt         50447 37 +    197351 ctctagtgccactgggttagggtttccatgacccagc
s panTro4.chr3_GL389630_random     14957 37 +    103936 ctctagtgccactgggttagggtttccatgacccagc
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199697113 37 + 202140232 ctgtagtgccactgggttagggtttctatgacccagc
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120795716 37 + 123690457 ctctactgccgctgggttagggtttccacgacccagc
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     16121 37 + 180491593 ctctagtgctgctgggttagggtctccacgatcgagt
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180281182 37 - 181584905 ctctagcgctgctgggttagggtctccacgaccaagc
i macFas5.chr6                 C 0 I 6467
s papAnu2.chr6                 173175388 37 - 174439528 ctctagtgctgctgggttagggtctccccaaccgAGT
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89616116 37 -  91010382 ctctagcgctgctgggttagggtctccacgaccaagc
i chlSab2.chr4                 C 0 C 0
s canFam3.chr34                 30180112 37 -  42124431 cacttgagttggaggaCTAGTTTTTCTGATTTCCAGG
i canFam3.chr34                I 227 C 0
e mm10.chr13                    46093351 746 - 120421639 I
e calJac3.chr2                    159744  0 - 204313951 C

a score=8091.000000
s hg38.chr3_KI270935v1_alt         50484 3 +    197351 tgg
s panTro4.chr3_GL389630_random     14994 3 +    103936 tgg
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199697150 3 + 202140232 tgg
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120795753 3 + 123690457 tgg
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     16158 3 + 180491593 tgg
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180287686 3 - 181584905 tga
i macFas5.chr6                 I 6467 C 0
s papAnu2.chr6                 173175425 3 - 174439528 TGA
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89616153 3 -  91010382 tgg
i chlSab2.chr4                 C 0 I 6359
s canFam3.chr34                 30180149 3 -  42124431 TGA
i canFam3.chr34                C 0 C 0
e mm10.chr13                    46093351 746 - 120421639 I
e calJac3.chr2                    159744 0 - 204313951 C

a score=16678.000000
s hg38.chr3_KI270935v1_alt         50487 8 +    197351 tcttggca
s panTro4.chr3_GL389630_random     14997 8 +    103936 tcttggca
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199697153 8 + 202140232 tcttggca
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120795756 8 + 123690457 tttcggca
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     16161 8 + 180491593 tctcggca
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180287689 8 - 181584905 tctcggca
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173175428 8 - 174439528 TCTCGGCA
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89622515 8 -  91010382 tctcggGA
i chlSab2.chr4                 I 6359 C 0
s canFam3.chr34                 30180152 8 -  42124431 TACTGTGA
i canFam3.chr34                C 0 C 0
e mm10.chr13                    46093351 746 - 120421639 I
e calJac3.chr2                    159744 0 - 204313951 C

a score=1221342.000000
s hg38.chr3_KI270935v1_alt         50495 400 +    197351 --------------gtaaatattgaaaaggaatagatacagttgccattatttacagatataatttccaaaaaatttccagagaataaacggaaaaactaacagaaacaaaacaagaatgtagtaaggtatgtgtataagagatttgtatgtaaaaatcagtagctttgcaatgtgccagcagtaatctgctcagacatcagtaaat-atctcattcgcatttcaaacaaaaaa-tttaaaatgccttgaaataatgtaaccagaaatacgaaaAGATGATATGAAAACGTCGCTGCTAAAGGACATGAAAGAATG-------TAA----TACTAG----ATTCTGAGATGCAATTTTTTTCATTTGTTCTTCCTGAAAAACCATTAGGT----TGATGTGCATTACAGTGTTACGATTATGTATGAGTCTAAGG
s panTro4.chr3_GL389630_random     15005 401 +    103936 --------------gtaaatattgaaaaggaatagatacagttgccattatttacagatataatttccaaaaaatttccagagagtaaacggaaaaactaacagaaacaaaacaagaatgtagtaaggtatgtggataagagatttgtatgtaaaaatcagtagctttgcaatgtgccagcagtaaTCTGCTCAGACATCAGTAAAT-ATCCCATTCACATTTCAAACAAAAAAATTCAAAATGCCTTGAAATAATGTAACCAGAAATACGAAAAGATGATACGAAAACATCGCTGCTAAAGGACATGAAAGAATG-------TAA----TACTAG----ATTCTGAGATGCAATTTTTTTCGTTTGTTCTTCCTGAAAAACCATTAGGT----TGATGTGCATTACAGTGTTACGATTATGTATGAGTCTAAGG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199697161 394 + 202140232 --------------gtaaatattgaaaaggaatagatacagttgccattatttacagatataatttcccaaaaacttccagagaagaaactgaaaaact------aacaaaacaagaatgtagtaaggtgtctggataagagatttgtatgtaaaaatcagtggctttgcaatgtgccagcagtaaTCTGCTCAGACATCAGTAAAT-ATTTCATTCACATTTCGAACAAAAAA-TTAAAAATTCCTTGAAATAATGTGACCAGAAATACGAAAAAAGGATATGAAAACGTGGCTGCTAAAGGACATGAAAGAATG-------TAA----TACTAG----ATTCTGAGATGCAATTTTTTTCATTTGTTCTTCCTGAAAAACCATTAGGT----TGATGTGCATTACAGTGTTACGATTGTGTATGAGTCTAAGG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120795764 400 + 123690457 --------------GTAAATATTGAAAAGGAATAGATACAGTTGCCATTATTTACAGATATAATTTCCAAAAAATTTCCAGAGAATAAACTGAATAACTAACAGAAACAAAACAAGAATGTagtaaggtgtctggataagagatttgtatctaaaaatcagtagctttgcaatgtgccagcagtaatctgctcagacatcagtaaat-atctcattcacatttcaaacaaaaaa-tttaaaatgccttgaaatactgtaaccagaaatatgaaaaaATGATATGAAAACGTGGCTGCTAAAGGACATGAAAGAATG-------TAA----TACTAG----ATTCTGAGATGCAGTTTTTTTCATTTGTTCTTCCTGAAAAACCATGAGGT----TGATGTGCATTACAGTGTTCCAATTATGTATGAGCCTAAGG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     16169 387 + 180491593 --------------GTAAATATT------------ATACaattgctattatttacagacataatttccaaaaaattcccagagaataaactgaaaaactaacagaaacaaaacaagaatgcagtaaggtgtctggataagatatttgtatctaaaaatcagtagctttgcgatgtgccagcagtaatctgctcagacatcagtaaat-atctcattcacatttcaaacaaaaaa-ttaaaaatgccttgaaataatgtaaccagaaatac-aagaaaggatatgaaaacgtggctgctaaaggacatgaaagaATG-------TAA----TACTAG----ATTCTGAGATGCAACTTTTTTCATTTGTTCTTCCTGAAAAACCATTAGGT----TGATGTGCATTGCAGTGTCATGATTATGTATGAGTCCAAGG
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180287697 399 - 181584905 --------------gtaaatattgaaaaggaatcaatacaattgctattatttacagatgtaatttccaaaaaattcccagagaataaactgaaaaattaacagaaacaaaacaagaatgcagtaaggtgtctggataagagatttgtatctaaaaatcagtagctttgcaatgtgccagcagtaaTCTGCTCAGACATCAGTAAAT-ATCTCATTCACATTTTAAACAAAAAA-TTAAAAATGCCTTGAAATAATGTAACCAGAAATAC-AAGAAAGGATATGAAAACGTGGCTGCTAAAGGACATGAAAGAATG-------TAA----TACTAG----ATTCTGAGATGCAACTTTTTTCATTTGTTCTTCCTGAAAAACCATTAGGT----TGATGTGCATTGCAGTGTCATGATTATGTATGAGTCTAAGG
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173175436 399 - 174439528 --------------GTAAATATTGAAAAGGAATCGGTACAATAGCTATTATTTACAGATGTAATTTCCAAAAAATTCCCAgagaataaactgaaaaattaacagaaacaaaacaagaatgcaGTAAGGTGTCTGGATAAGAGATTTGTATCTAAAAATCAGTAGCTTTGCGATGTGCCAGCAGTAATCTGCTCAGACATCAGTAAAT-ATCTCattcacattttaaacaaaaaa-ttaaaaatgccttGAAATAATGTAACCAGAAATAC-AAGAAAGGATATGAAAACGTGGCTGCTAAAGGACATGAAAGAATG-------TAA----TACTAG----ATTCTGAGATGcaacttttttcatttgttcttcctGAAAAACCATTAGGT----TGATGTGCATTACAGTGTCATGATTATGTATGAGTCTAAGG
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89622523 399 -  91010382 --------------GTAAATattgaaaaggaatcaatacaattgctattatttacagatgtaatttccaaaaaattcccagagaataaactgaaaaattaacagaaacaaaacaagaatgcagtaaggtgtctggataagagatttatatctaaaaatcagtagctttgtgatgtgccagcagtaatctgctcagacatcagtaaat-atctcattcacattttaaacaaaaaa-ttaaaaatgccttgaaataatgtaaccagaaatac-aagaAAGGATATGAAAACGTGGCTGCTAAAGGACATGAAAGAATG-------TAA----TACTAG----ATTTTGAGATGCAACTTTTTTCATTTGTTCTTCCTGAAAAACCATTAGGT----TGATGTGCATTGCAGTGTCATGATTATGTATGAGTCTAAGG
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    159744 401 - 204313951 --------------gtaaatattgaaaaggaatagatataattgctattatttacagacacaatttccaaaaagttcccagagaataaattgaaaaactaatagaaacaaaagaaggatgtaggtaggtgtctggatgaaaggtttgtagctaaacctcagtagcttttcaatgtgccagcaggaatccgctcagacgtcagtaaat-atctcattcacctttcagacaaaaaa-caaaaaatgccttgaataaatataaccagaaatacgtaaaacagatatG-AAACATC-CTGCTAAAGTGTGTTTAAGAATG-------TGA----TACTTACTGCCTTCTAAGATGCAA-GTGTTGCGTTTGTTCTTCCTGAAGAACCATTAGGT----TGATGTGCATTACCGTGTTACAGTTATGTGTCAGTCTAAGG
i calJac3.chr2                 C 0 C 0
s canFam3.chr34                 30180160 384 -  42124431 GTGATAGAAATCAGTTACGTattgaaaaggagtgg--acaagtatcattacttacagatacaatt----aaaaatctcaaggcaataag-tgagaaactcata-----aaaacaagaatg----gagatatctgtataaaagattcaaa----------agtagctttccaacatgcctgcaataatc--------cattagaaaatcatctcattcacagtgcagaccaaaag-tttaaaatgccttgaataaacctaaccctaaagag----------tatgaaaagatgagcactgaagaatataaaagaatgttTTAACTAACATTTACTAG----ATTCTAAGAT--AGTTTTTTCCATTTCCTTATCCTGAAAGGCCAGAACATTTGATAGCGTGCATTACAATTTTAAACTTATGTATCATTGTgggg
i canFam3.chr34                C 0 I 3374
e mm10.chr13                    46093351 746 - 120421639 I

a score=528436.000000
s hg38.chr3_KI270935v1_alt         50895 179 +    197351 AAAATCAGATGAAATGTCCAAATTGAACCACGAAGGTGCATTGGTAGAGGAAGAGACAATTAGGGTCAGTGGAGCAAAGCACAGTTAGAGGGAGAAGC------AAGGAGGAGGAGGGATCACGGAGGTGGTGCCTGTGTGTCCCACAGGAAGCAAAAGCTGATGCCCAGTTCCCAGCATACCTA
s panTro4.chr3_GL389630_random     15406 179 +    103936 AAAATCAGATGAAATGTCCAAATTAAACCATGAAGGTGCATTGGTAGAGGAAGAGACAATTAGGGTCAGTGGAGCAAAGCACAGTTAGAGGGAGAAGC------AAGGAGGAGGAGGGATCACGGAGGTGGTACCTGTGTGTCCCACAGGAAGCAAAAGCTGATGCCCAGTTCCCAGCATACCTA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199697555 179 + 202140232 AAAATCAGATGAAATGTCCAAATTAAACCATGAAGGTGCATTGGTAGAGGAAGAGACAATTAGAGTCAGTGGAGCAAAGCACAGTTAGAGGGAGAAGC------AAGGAGGAGGAGGGATCACGGAGGTGGTGCCTGTCTGTCTGACTGGAAGCAAAAGCTGATGCCCAGTTCCTAGCATACCTA
i ponAbe2.chr3                 C 0 I 1
s nomLeu3.chr11                120796164 179 + 123690457 AGAATCAGATGAAATGTCCAAATTAAACCATGAAGGTGCATTGGTAGAGGAAGAGACAGTTAGGGTCAGTGGAGCAAAGCACAGTTAGAGGGAGAAGC------AAGGAGGAGGAGGGATCACGGAGGTGGTACCTGTCTGTCCCACAGGAAGCAAAAGCTGACACCCAGTTCCCAGCATACCTA
i nomLeu3.chr11                C 0 I 1
s rheMac3.chr6                     16556 179 + 180491593 AAAATCAGATGAAATGTCCAAATTAAACCATGAAAGTGCATTGGTAGAGGAGGAAACAATTAGGGTCAGTGGAGCAAAGCAGAGTTAGAGGGAGAAGC------AAGGAGGAGGAGGGATCACGGAGGTGGTATCTGTCTGTCCCACAGGAAGCAAAAGCTGACGCCCGGTTGCCAGCACACCTA
i rheMac3.chr6                 C 0 I 1
s macFas5.chr6                 180288096 179 - 181584905 AAAATCAGATGAAATGTCCAAATTAAACCATGAAGGTGCATTGGTAGAGGAGGAAACAATTAGGGTCAGTGGAGCAAAGCAGAGTTAGAGGGAGAAGC------AAGGAGGAGGAGGGATCACGGAGGTGGTATCTGTCTGTCCCACAGGAAGCAAAAGCTGACGCCCAGTTGCCAGCACACCTA
i macFas5.chr6                 C 0 I 3493
s papAnu2.chr6                 173175835 179 - 174439528 AAAATCAGATGAAATGTCCAAATTAAACCATGAAGGTGCATTGGTAGAGGAGGAAACAATTAGGGTCAGTGGAGCAAAGCAGAGTTAGAGGGAGaagc------aaggaggaggagggatcACGGAGGTGGTATCTGTCTGTCCCACAGGAAGCAAAAGCTGACGCCCGGTTGCCAGCACACCTA
i papAnu2.chr6                 C 0 I 1
s chlSab2.chr4                  89622922 179 -  91010382 AAAATCAGATGAAATGTCCAAATTAAACCATGAAGGTGCATTGGTAGAGGAAGAAACAATTAGGGTCAGGGGAGCAAAGCAGAGTTAGAGGGAGAAGC------AAGGAGGAGGAGGGATCACGGAGGTGGTGTCTGTCTGTCCCACAGGAAGCAACAGCTGACGCCCGGTTGCCAGCACACCTA
i chlSab2.chr4                 C 0 I 1
s calJac3.chr2                    160145 172 - 204313951 GAAATCAG-------------ATTCAACCATGAAGCTGCATTTGCAGAGGAAGAGACAATTAGGGTCAGAGGAACAAAGCAGAGTTAGAGGGAGAAGCGAGGAGGAGGAGGAGGAGGGATCAGGGAAGTGGTGCCCCTCCGTCCCACAGGAAGCAAACGCTGACACCTAGTTCCCAGCATACCTA
i calJac3.chr2                 C 0 I 1
e mm10.chr13                    46093351 746 - 120421639 I
e canFam3.chr34                 30180544 3374 -  42124431 I

a score=1106069.000000
s hg38.chr3_KI270935v1_alt         51074 399 +    197351 AGTAAACTTCAGGTCCACT------CCTAGCAC-------------------------------------GTTTCTCGTGATAGTAAAACTATGAAGGAACTCAGTGTACAAGGAGCTTCTACAAAATAGGCAGAAGACAGTAGCCAGATGGGCCAAGGGCCCCAGCCACCCACGCCCCTCCCTCTCCTTGAAGACCTTCGGTTCCAACCCCACCATCAGCAGGGCTCTGCTCAGTTCCTCCTTGTGTGTATCACCACAGGGCTGCTGGCTCGTGTCACGTTCACCACCAGACCCCACATCAGGAGTC----------------CCGCCAGGGG-TGT-GGGGAGGCAGTGCTGCCTGGTTGGCCGTGGAGCCGTATGGAACGTGGTGCCTCACAGGCAGTCTGCTTGGCGTCCTGGACCCTGGCTGTATCCCGCTGGAAAGGATGTGTGTGGGTCTAAG
s panTro4.chr3_GL389630_random     15585 399 +    103936 AGTAAACTTCAGGTCCACT------CCTAGCAC-------------------------------------GTTTCTCGTGATAGTAAAACTATGAAGGAACTCAGTGTACAAGGAGCTTCTACAAAATAGGCAGAAGACAGTAGCCAGATGGGCCAAGGGCCCCAGCCACCCACGCCCCTCCCTCTCCTTGAAGACCTTCGGTTCCAACCCCACCATCAGCAGGGCTCTGCTCAGTTCCTCCTTGTGTGTATCACCACAGGGCTGCTGGCTCGTGTCACGTTGACCACCAGACCCCACGTCAGGAGTC----------------CCGCCAGGGG-TGT-GGGGAGGCAGCGCTGCCTGGTTGGCCGCGGAGCCCTATGGAACGTGGTGCCTCACAGGCAGTCTGCTTGGCGTCCTGGACCCTGGCTGTATCCCGCTGGAAAGGATGTGTGTGGGTCTAAG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199697735 399 + 202140232 AGTAAACTTCAGTTCCACT-----GCATAGCAC-------------------------------------GTTTCTAGTCATGGTAAAACTATGAAGGAACTCAGTGTACAAGGAGCTTCTACAAAATAGGCAGAAGATACTAGTCAGATGGGCCAAGGGCCCCAGCCACCAACG-CCCTCCCTCTCCTTGTAGACCTTCGGTTCCAACCCCACCATCAGCAGGGCTCTGTTCAGCTCCTCCTTGTGTGTGTCACCACAGGGCTGCTGGCTCGTGTCACGTTGACCACCAGACCCCACGTCAGGCGTC----------------CCGCCAGGGG-TGT-GGGGAGGCAGTGCTGCCTGGTTGGCTGTGGAGCCGTATGGAACATGGTGCCTCACAGGCAGTCTGCTTGGAGTCCTGGACCCTGGCTGTATCCCGCTGGAAAGGATGTGTGTGGGTCTAAG
i ponAbe2.chr3                 I 1 C 0
s nomLeu3.chr11                120796344 401 + 123690457 AGTAAACTTCAGGTCCACT-----GCATAGCAC-------------------------------------GTTTCTCACCACAGTAAAACTATGAAGGAACTCAGTATACAAGGAGCTTCTACAAAATAGGCAAAAGACAGTAGCCAGATGGGCCAAGGGCCCCAGCCACCCACGCCCCTCCCTCTCCTTGAAGACCTTCCGCTCCAACCCCACCATCAGCAGGGCTCTGCTCAGCTCCTCCTAGTGTGTATCACCACAGGGCTGCTGGCTCGTGTCACGTTGACCACCAGACCCCATGTCAGGAGTC----------------CCACCAGGGGTTGT-GGGGAGGCAGCGCTGCCTGGTTGGCCACTGAGCCGTATGGAACATGGTGCCTCACAGGCAGTCTGCTTGGAGTCCTGGACCCCGGCTGTATCCCGCTGGAAAGGATGTGTGTGGGTCTAAG
i nomLeu3.chr11                I 1 C 0
s rheMac3.chr6                     16736 400 + 180491593 AGTAAACTTCAGGTCCACT-----GCATGGCAC-------------------------------------GTTTCTTGCCACAGTAAAACTATGAAGGAAGTCAGTGTATAAGAAGCTTCTACAAAATAGGCAGAAGACAGTAGCCAGATGGGCCAAGGGCCCCAGCCACCCACGCCCCTCCCTCTCACTGAAGACCTTTGGCTCCAACCCCACCATCACCAGGGCTCTGCTCAGCTCCTCCTAGTGTGTGTCACCACAGGGCTGCTGGCTTGTGTCACGTTCACCACCAGACCCCACGTCAGGAGTC----------------CCGCCAGGGG-CGT-GGGGAGGCAGCGTTTCCTGCTTGGCCGCAGAGCCATGTGGAACATGGTACCTCACAGGCAGTCTGCTTGGAGTCCTGGAGCCTGGCTGTATCCCACTGGAAAGGATGTGTCTGGGTCTAAG
i rheMac3.chr6                 I 1 C 0
s macFas5.chr6                 180291768 400 - 181584905 AGTAAACTTCAGGTCCACT-----GCATGGCAC-------------------------------------GTTTCTTGCCACAGTAAAACTATGAAGGAAGTCAGTGTATAAGAAGCTTCTACAAAATAGGCAGAAGACAGTAGCCAGATGGGCCAAGGGCCCCAGCCACCCACGCCCCTCCCTCTCACTGAAGACCTTTGGCTCCAACCCCACCATCACCAGGGCTCTGCTCAGCTCCTCCTAGTGTGTGTCACCACAGGGCTGCTGGCTTGTGTCACGTTCACCACCAGACCCCACGTCAGGAGTC----------------CCGCCAGGGG-TGT-GGGGAGGCAGCACTGCCTGGTTGGCCGCAGAGCCATGTGGAACATGGTACCTCACAGGCAGTCTGCTTGGAGTCCTGGACCCTGGCTGTATCCCACTGGAAAGGATGTGTCTGGGTCTAAG
i macFas5.chr6                 I 3493 C 0
s papAnu2.chr6                 173176015 400 - 174439528 AGTAAACTTCAGGTCCACT-----GCATGGCAT-------------------------------------GTTTCTCGCCACAGTAAAACTATGAAGGAAGTCAGTGTACAAGAAGCTTCTACAAAATAGGCAGAAGACAGTAGCCAGATGGGCCAAGGGCCCCAGCCACCCACGCCCCTCCCTCTCACTGAAGACCTTCGGCTCCAACCCCACCATCACCAGGGCTCTGCTCAGCTCCTCCTAGTGTGTGTCACCACAGGGCTGCTGGCTTGTGTCACGTTCACCACCAGACCCCACGTCAGGAGTC----------------CCGCCAGGGG-TGT-GGGGAGGCAGCGTTTCCTGCTTGGCCGCAGAGCCATGTCGAACATGGTACCTCACAGGCAGTCTGCTTGGAGTCCTGGAGCCTGGCTGTATCCCACTGGAAAGGATGTGTCTGGGTCTAAG
i papAnu2.chr6                 I 1 C 0
s chlSab2.chr4                  89623102 401 -  91010382 AGTAAACTTCGGGTCCACT-----GCATGGCAC-------------------------------------GTTTCTCGCCACAGTAAAACTATGAAAGAAGTCAGTGTACAAGAAGCTTCTACAAAATAGGCAGAAGACAGTAGCCAGATGGGCCAAGGGCCCCAGCCACCCACGCCCCTCCCTCTCACTAAAGACCTTCGGCTCCAACCCCACTATCACCAGGGCTCTGCTCAGCTCCTCCTAGTTTGTGTCACCACAGGGCTGCTTTCTTGTGTCACGTTCACCACCAGACCCCACGTCAGGAGTC----------------CCGCCAGGGG-TGTGGGGGAGGCAGCATTGCCTGGTTGGCCGCGGAGCCATGTGGAACATGGTGCCTCACAGGCAGTCTGCTTGGAGTCCTGGAGCCTGGCTGTATCCCACTGGAAAGGATGTGTCTGGGTCTAAG
i chlSab2.chr4                 I 1 C 0
s calJac3.chr2                    160318 417 - 204313951 AAAAAACTTCAGATCTGCCTACAAACATTTCATCCAGCCACGTACCTACACCCTTATTTTGTTTCTCTTAGTTCCTCATCACTGTAAAACTGTGATGGACCCCAGTGTACGAGGAGCCTTTGCAAAACAGGCCGAAGACAGTAGCTAGATGGGCCAAGGGTCCCAGCCACCCACG-CCCTCCCTCTCCTTGAAGACCTTTGGCTCCTACACCACCATCATCAGCACCCTGCTCAG---CTCCTAGTGTGTATCACCA-------------------CACATTCACCACCAGACCCCACGTCAGGAGTCCCATCTGGTCCCGTGTCCACCAGGGG-TGT--GGGAGGGGGTGCTGGCTGGCTGGCCGCAGAGCCATATGGAACATGGCACCTCACAGGCAGTCTG-----------------TGGCTGTATCCCGCTGGAAAGCATGCATGTGGGTCTAAG
i calJac3.chr2                 I 1 C 0
e mm10.chr13                    46093351 746 - 120421639 I
e canFam3.chr34                 30180544 3374 -  42124431 I

a score=295772.000000
s hg38.chr3_KI270935v1_alt         51473 106 +    197351 ATATGTATATAATAGAAACA----TTTATTCAGAAGCTTTAGTCAAGACTTCATTTTTAAGTTCAGAGTAATAAACTCATAGTCTAAATTTCCTAATTTTTCTGTTTAAT
s panTro4.chr3_GL389630_random     15984 106 +    103936 ATGTGTATATAATAGAAACA----CTTATTCAGAAGCTTTAGTCAAAACTTCATTTTTAAGTTCAGAGTAATAAACTCATAGTCTAAATTTCCTAATTTTTCTGTTTAAT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199698134 109 + 202140232 ATATGTATGTAATAGAAACA-TTGTTTATTCAGAAGCTTTAGTCAAAACTTCATTTTTAAGTTCAGAGTAATAAACTCACAGTCTGAATTTCCTAATTTTCCTGTTTAAT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120796745 110 + 123690457 ATATGTATGTAATAGAAACATTTATTTATTCAGAAGCTTTAGTCAAAACTTCATTTTTAAATTCAGAGTAATAAACTCAAAGTCTATATTTCCTAATTTTTCTGTTTAAT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     17136 102 + 180491593 ATGTGTATGTAATAGAAACA-----GTATTCAGAAGCTTTAGTCAAAACTTCATTTTTAAGTTCAGAGTAATAAACTCA---TCTGAATTTCCTAATTTTTCTGTTTAAT
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180292168 105 - 181584905 ATGTGTATGTAATAGAAACA-----GTATTCAGAAGCTTTAGTCAAAACTTCATTTTTAAGTTCAGAGTAATAAACTCATAGTCTGAATTTCCTAATTTTTCTGTTTAAT
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173176415 103 - 174439528 ATGTGTATGTAATAGAAACA----TGTATTCAGAAGCTTTAGTCAAAACTTCATTTTTAAGTTCAGAGTAATAAACTCA---TCtgaatttcctaatttttctatttaat
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89623503 102 -  91010382 ATGTGTATGTAACAGAAACA----TGTATTCAG-AGCTTTAGTCAAAACTTCATTTTTAAGTTCAGAGTAATAAACTCA---TCTGAATTTCCTAATTTTTCTATTTAAT
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    160735 103 - 204313951 ACGTGTAGTTAATAGAAACA------TTTTCAGAAGCGTTAGTCAGAACTTCATTTTTAAGTTCAGAGTAATGAACTCATAGTCTGAGTTTCCTCATTGTTCT-TTTAAT
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46094097  87 - 120421639 ATGCATATATAATAAGACCC----TTTCTCCAAGA-----AAAAAGAATTACA---TTAAGTTTAAAT---TTAACTCATAGTCTGAATTTCCTA--------GTTTAAG
i mm10.chr13                   I 746 C 0
e canFam3.chr34                 30180544 3374 -  42124431 I

a score=638065.000000
s hg38.chr3_KI270935v1_alt         51579 174 +    197351 TTACATAAA-------T-AAAATGAAATGCAAAACAACAG----GTCTAAAAGTTAAGCAGTTCTTGGTATGGCTGCTTC-TATGAATTAAAAGTTTACAAATAATATTTTGTGCCACAGTCAACGCAAAATCATGCTGCCGTGTTCCGTGTGGGAAGCTTGTTGCAAGAAGGTTGTGGGAAAATCA
s panTro4.chr3_GL389630_random     16090 174 +    103936 TTACATAAA-------T-AAAATGAAATGCAAAACAACAG----GTCTAAAAGTTAAGCAGTTCTTGGTATGGCTGCTTC-TATGCATTAAAAGTTTACAAATAATATTTTGTGCCACAGTCAACGCAAAATCATGCTGCCGTGTTCCGTGTGGGAAGCTTGTTGCAAGAAGGTTGTGGGAAAATCA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199698243 174 + 202140232 TTACATAAA-------T-AAAATGAAATGCAAAACAACAG----GTCTGAAAGTTAAGCAGTTCTTGGTACGGCTGCTTC-TATGGCTTAAAAGTTTACAAATAATATTTTGTGCCACAGTCAATGTAAAATCATGCTGCCGTGTTCCGTGTGGGAAGCGTGTTGCAAGAAGGTTGTGGGAAAATCA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120796855 174 + 123690457 TTACATAAA-------T-AAAATGAAATGCAAAACAACAG----GTCTACAAGTTAAGCAGTTCTTGGTATGGCTGCTTC-TATGGATTAAAAGTTTATGAATAATATTTTGTGCCACAGTCAGTGCAAAATCGTGCTGCTGTGTTCCGTGTGGGAAGCGTGTTGCAAGAAGGTTGTGGGAAAATCA
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     17238 180 + 180491593 TTACGTAACTT-----T-TAAATGAAATGCAAAACAACAGTTAAGTCTAAAAGTTAAGCAGTTCTTGGTGTGGCTGCTTC-TATGAATTAAAAGTTTACCAATAATATTTTGTGTCACAGTCAATGCAAAATCATGCTGCCGTGTTCCGTGTGGGAAGCGTGTTGCAAGAAGGTTGTGGGAAAATCA
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180292273 180 - 181584905 TTACGTAACTT-----T-TAAATGAAATGCAAAACAACAGTTAAGTCTAAAAGTTAAGCAGTTCTTGGTGTGGCTGCTTC-TATGAATTAAAAGTTTACCAATAATATTTTGTGTCACAGTCAATGCAAAATCATGCTGCCGTGTTCCGTGTGGGAAGCGTGTTGCAAGAAGGTTGTGGGAAAATCA
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173176518 173 - 174439528 ttacaTAGC-------------TGAAATGCAAAACAACAGTTAAGTCTAAAAGTTAAGCAGTTCTTGGTGTGGCTATTTG-TATGGATTAAAAGTTTACCAATAATATTTTGTGTCACAGTCAATGCAAAATCATGCTGCCGTGTTCCGTGTGGGAAGCGTGTTGCGAGAAGGTTGTGGGAAAATCA
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89623605 178 -  91010382 TTACATAAC-------T-CAGCTGAAATGCAAAACAACAGTTAAGTCTAAAAGTTAAGCAGTTCTTGGTGTGGCTGCTTC-TATGGATTAAAAGTTTACCAATAATATTTTGTGCCACAGTCAATGCAAAATCATGCTGCCGTGTTCCGTGTGGGAAGCGTGTTGCAAGAAGGTTGTGGGAAAATCA
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    160838 181 - 204313951 TTACATAACTTTTAAAT-AAAATGAAATGCAAAACAACAG----GTCTCAAAGTTAAGCAGTTCTTGGTATGGCTGCTTC-TATGGATTAAAAGTTTACAAACGCTATTTTGTGCCACAGTCAATGCAAAATCATGCTGCCGTGTTCCGTGTGGGAAGTGTGCTGCAAGAAGGTTGCGAGAAAATCA
i calJac3.chr2                 C 0 M 577
s mm10.chr13                    46094184 164 - 120421639 TTGTATAAA-------T--ATATCAAATGTAGAA-AATAT---------TAAGTTGTATGAGTTTTTACCTATCTTTTTC-TGTGCATTAAAAATTTGT-AATGGTGTTTTATG--ATAGTCGATGCAGAACCATGCTGCAGTGTTCCGTGTGGGGAGTGTATTGCAAGAAGGCTGTGAAAAAATCA
i mm10.chr13                   C 0 C 0
s canFam3.chr34                 30183918 177 -  42124431 ttaaaaaaa-------TAAAAATGAAATGCGTAAGAAAAA---AGCTAAAGGGTTTACCAGTTTTAGTCCTAGCTGCTTCATGTGAATTAAAGATTGACAAATGGTATTTTATGTTCCAGTCGATGCAGAGTCATGCTGCTGTGTTCCGTGTGGGAAGTGTGTTACAGGAAGGCTGTGAGAAAATCA
i canFam3.chr34                I 3374 C 0

a score=793231.000000
s hg38.chr3_KI270935v1_alt         51753 301 +    197351 GCAAGCTCTATGGAGACCTGAAGCATCTGAAGACGTTTGACCGGGGTGAGCAG-----ACAGTGGGCTCTGTGCACACTGTTGGGC--CCTGCCTTCTGCAGGGTGGGCTG----------GTGTCTGTCCC-GTCAGTGCTGACTTAGTTCCATGCTTGCTGTCTGGATGGGTGCTGGCCCCCAGCTGTAAAGCCACAACCAGTGACTCCATGGACTAGCAGGCCCAGGCTGACAGCTCGGAGGGCCCGTGTGACTGGGTCCCACCTGCCCCTGATGGAACTTTTTGTGTCCCCAGGAATGGTCTGGAACACGGACCT
s panTro4.chr3_GL389630_random     16264 298 +    103936 ---AGCTCTACGGAGACCTGAAGCATCTGAAGACGTTTGACCGGGGTGAGCAG-----ACAGTGGGCTCTGTGCACACTGTTGGGC--CCTGCCTTCTGCAGGGTGGGCTG----------GTGTCTGTCCC-GTCAGTGCTGACTTAGTTCCATGCTTACTGTCTGGATGGGTGCTGGCCCTCAGCTGTAAAGCCACAACCAGTGACTCCATGGACTAGCAGGCCCAGGCTGACAGCTCGGAGGGCCCGTGTGACTGGGTCCCGCCTGCCCCTGATGGAAGTTTTTGTGTCCCCAGGAATGGTCTGGAACACGGACCT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199698417 301 + 202140232 GCAAGCTCTACGGAGACCTGAAGCACCTGAAGATGTTTGACCGGGGTGAGCAG-----ACAGCAGGCTGTGTGCACAATGTTGGGC--CCTGCCTTCTGCAGGGTGGGCTG----------GTGTCTGTCCC-ATCAGTGCTCACTTAGTTCCATGCTTGCTGTCTGGATGGGTCCTGGCCCTCAGCTATAAAGCCACAACCAGTGACTCCATGGACTAGCAGGCCCAGGCTGACAGCTCGGAGGGCCCATGTGACTGTGTCCCACCTGCCCCTGATGGAACTTTTTGTGTTCCCAGGAATGGTCTGGAACACAGACCT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120797029 297 + 123690457 ---AGCTCTGCAGAGACCTGAAGGACCTGAAGACGTTCAGTCGGGGCGAGCAG-----ACAGCAGGCTCCGTGCACACTGTTGGGC--CCTGCCTTCTGCAGGGTGGGCTG----------GTGTCTGTCCC-GTCAGTGCTGACTTAGTTCCATGCTTGCTGTCTGGATGGGTCCTGGCCCTCAGCTATAAAGCCACAACCAGTGACTCCATGGACTAGCAGGCCCAGGCTGACATCTCGGAGGGCCCATGTGGCTGGGTCCTGCCTGCCCC-GATGGAACTTTTTGTGTCCCCAGGAATGGTCTGGAACACGGACCT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     17418 293 + 180491593 GCAAGCTCTACGGAGACCTGAAGCACCTGAAGACGTTTGACCGGGGTGAGCAGACAGCACAGCGGGCTCTGTG--CAGTGTTGGGC--CCTGCCTTCTGTAGGGTGGGCTG----------GTGTCTGTGCC-GTCAGTGCTGACTTAGTTCCATGCTTGCTGTCCGGAT----------CCACAGCCATAAAGCCACAACCAGTGGCTCCACGGACTAGCAGGCCCAGGCTGACAGCTCAGAAGGCCCCTGTGAC-GGGTCCCGCCTGCCCCTGATGGAACTTTTTGTGTCCCCAGGAATGGTCTGGAACACGGACCT
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180292453 293 - 181584905 GCAAGCTCTACGGAGACCTGAAGCACCTGAAGACGTTTGACCGGGGTGAGCAGACAGCACAGCGGGCTCTGTG--CAGTGTTGGGC--CCTGCCTTCTGTAGGGTGGGCTG----------GTGTCTGTGCC-GTCAGTGCTGCCTTAGTTCCATGCTTGCTGTCCGGAT----------CCACAGCCATAAAGCCACAACCAGTGGCTCCACGGACTAGCAGGCCCAGGCTGACAGCTCAGAAGGCCCCTGTGAC-GGGTCCCGCCTGCCCCTGATGGAACTTTTTGTGTCCCCAGGAATGGTCTGGAACACGGACCT
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173176691 305 - 174439528 GCAAGCTCTACGGAGACCTGAAGCACCTGAAGACGTTTGACCGGGGTGAGCAGACAGCACAGCGGGCTCTGTGCACAGTGTTGGGC--CTTGCCTTCTGTAGGGTGGGCTG----------GTGTCTGTGCC-GTCAGTGCTGACTTAGTTCCATGCTTGCTGTCCGGATGGGTCCTGGCCCACAGCCATAAAGCCATAACCAGTGGCTCCACGGACTAGCAGGCCCAGGCTGACAGCTCAGAAGGCCCCTGTAAC-GGGTCCCGCCTGCCCCTGATGGAACTTTTTGTGTCCCCAGGAATGGTCTGGAACACGGACCT
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89623783 304 -  91010382 GCAAGCTCTACGGAGACCTGAAGCACCTGAAGACGTTTGACCGGGGTGAGCAGACAGCACAGCGGGCTCTGTG--CAGTGTTGGGC--CCTGCCTTCTGCAGGGTGGGCTG----------GTGTCTGTGCT-GTCAGTGCTGACTTAGTTCCATGCTTGCTGTCCGGATGGGTCCTGGCCCACAGCCATAAAGCCATAACCAGTGGCTACACGGACTAGCAGGCCCAGGCGGACAGCTCAGAAGGCCCCTGTGACTGGGCCCCGCCTGCCCCTGGTGGAACTTTTTGTGTCCCCAGGAATGGTCTGGAACACGGACCT
i chlSab2.chr4                 C 0 C 0
s mm10.chr13                    46094348 256 - 120421639 GTCAGCTCTATGGAGACCTAAAGCATCTAAAGACATTCGACAGGGGTGAGTCA-----GCAGTACTCTCAGAG----------GAT--ACTGCCTTCCTTGGGATAGGTTG----------GTATCTGTCCCTTTTACCACTACCTTAG-TCCATGCCTGCTGTCCAGCC-ATCTCTTCCCCACAGCTGTA-----------TGTTGCTTTATG-----------------------TCCAGAGTACCTACATGACTGGGTCCTATTTGTCTCTCATTGGTTCTTGTGTATCCCCAGGAATGGTTTGGAACACAGACCT
i mm10.chr13                   C 0 C 0
s canFam3.chr34                 30184095 234 -  42124431 GCCAGCTCTATGGAGACCTAAAGCATCTGAAGACATTTGACCGAGGTGAGCAT----TCCATGGGGCCCTGCA--CACAGTTGGGCTGCTGGATATTTGCAAGACAGACTGCCTCAGAGCCCTGTCTGTCCC----AGTGCGGAATTCACTCT-------------------------GCCCACAGCTG---------------------------------------------CAGCCTGGAGGACCCAGTTAACTGGATCCTATCT---CATGA--GTACTCGGTGTGTCCCTAGGAATGGTCTGGAACACCGACCT
i canFam3.chr34                C 0 C 0
e calJac3.chr2                    161019 577 - 204313951 M

a score=1170153.000000
s hg38.chr3_KI270935v1_alt         52054 312 +    197351 GGTGGAGACCCTGGAGCTGCAGAACCTGATGCTATGTGCGCTGCAGACCGTCAATGGAGCAGAGGCGGGGAAGGAGTCACGGGGCGCGCACGCCGGGGAAGACTACAAGGTGCGCCTTCTCGCCACGC---CCACCTGCACCTGCCTTTTCCTCCCGCCTGGTGGGACTCA-GCCCC-ACCCCTGCATTTTCTCTGCATTTTATGTCGTTTCCCCAAAAGTATATC--CAAAAAATGCCTTTTTCCC--------------TCTGGTAACTTTGATCCCTGGGTTCTCGCCATTTTCTGGATCACTGTGACCTGTTCCTTGCTTTGGGTCGGC
s panTro4.chr3_GL389630_random     16562 312 +    103936 GGTGGAGACCCTGGAGCTGCAGAACCTGATGCTGTGTGCGCTGCAGACCGTCAGTGGAGCAGAGGCGTGGAAGGAGTCACGGGGCGCGCACGCCAGGGAAGACTACAAGGTGCGCCTTCTCGCCACGC---CCACCTGCACCTGCCTTTTCCTCCCGCCTGGTGGGACTCA-GCCCC-ACCCCTGCATTTTCTCTGCATTTTATGTCGTTTCCCCAAAAGTAAATC--CAAAAAATGCCTTTTTCCC--------------CCTGGTAACTTTGATCCCTGGGTTCTCGCCATTTTCTGGATCACTGTGACCTGTTCCTTGCTTTGGGTCGGC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199698718 312 + 202140232 GGTGGAGAACCTGGAGCTGCAGAACCTGATGCTGTGTGCGCTGCAGACCATCAATGGAGCAGAGGCGCGGAAGGAGTCACGGGGCGTGCACGCCAGGGAAGAATACAAGGTGAGCCTTCTCTCCACGC---CCACCAGCACCTGCCTTTTCCTCCTGCCTGGTGGCACTCA-GCCCC-ACCCCTGCATTTTCTCTGCATTTTATTTCATTTCCCCAAAAGTAAATC--CAAAACATGCCTTTTTCCC--------------CCTGGTAACTTTGATCTCTGGGTTCTCACCATTTTCTGGACCACTGTGACCTTTTCCTTGCTTTTGGTCGGC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120797326 311 + 123690457 GGTGGAGACCCTGGAGCTGCAGAACCTGATGCTGTGTGCGCCGCAGACCATCAGTGGAGCAGAGGCGTGGAAGGAGTCACGGGGCGCACACGCCAGGGAAGACTACAAGGTGCGCCTTCTCACCACAC---CCACCTGCACCTGCCTTTTCCTCCCACCTGGGTGGACTCA-GCCCC-ACCCCTGCATTTTCTCTGCATTTTATTTCGTTTCCCCAAAAGTAAATC--CAAAAAATGCTTTCTTCCC--------------CCTGGTAACTTTGATCCCTGGGTTCTCGCCATCTTCTGGATCACTGCAACCT-TTCCTTGCTTTGGGTCAGC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     17711 312 + 180491593 GGTGGAGACCCTGGAGCTGCAGAACCTGATGCTGTGTGCGCTGCAGACCATCTACGGAGCAGAGGCGCGGAAGGAGTCACGGGGCGCACACGCCAGGGAAGACTACAAGGTGCGCCTTCTCGCCACAC---CCACCTGCACCTGCCTTTTCCTCCCACCTGGTGGGACTCA-GCCCC-ACCCCTGCATTTTCTCTGCATTTTATTTCATTTCCCCAAAAGTAAATC--CAAAAAACGCCTTTTTCCC--------------CCTGGTAACTCTGATCCCTGGGTTCCCGCCATCCTCTGGATCACTGTGACCTTTTCCTTGCTTTGGGTCAGC
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180292746 312 - 181584905 GGTGGAGACCCTGGAGCTGCAGAACCTGATGCTGTGTGCGCTGCAGACCATCTACGGAGCAGAGGCGCGGAAGGAGTCACGGGGCGCACACGCCAGGGAAGACTACAAGGTGCGCCTTCTCGCCACAC---CCACCTGCACCTGCCTTTTCCTCCCACCTGGTGGGACTCA-GCCCC-ACCCCTGCATTTTCTCTGCATTTTATTTCATTTCCCCAAAAGTAAATC--CAAAAAACGCCTTTTTCCC--------------CCTGGTAACTTTGATCCCTGGGTTCCCGCCATCCTCTGGATCACTGTGACCTTTTCCTTGCTTTAGGTCACC
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173176996 312 - 174439528 GGTGGAGACCCTGGAGCTGCAGAACCTGATGCTGTGTGCGCTGCAGACCATCTATGGAGCAGAGGCGCGGAAGGAGTCATGGGGCGCACACGCCAGGGAAGACTACAAGGTGCGCCTTCTCGCCACAC---CCACCTGCACCTGCCTTTTCCTCCCACCTGGTGGGACTCA-GCCCC-ACCTCTGcattttctctgcattttatttcatttccccaAAAGTAAATC--CAAAAAACGCCTTTTTCCC--------------CCTGGTAACTTTGATCCCTGGGTTCCCGCCATCCTCTGGATCACTGTGACCTTTTCCTTGCTTTGGGTCAGC
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89624087 312 -  91010382 GGTGGAGACCCTGGAGCTGCAGAACCTGATGCTGTGTGCGCTGCAGACCATCTACGGAGCAGAGGCGCGGAAGGAGTCACGGGGCGCCCACGCCAGGGAAGACTACAAGGTGCGCCTTCTCGCCACAC---CCACCTGCACCTGCCTTTTCCTCCCACCTGGTGGGACTCA-GCCCC-ACCCCTGCATTTTCTCTGCATTTTATTTCATTTCCCCAACAGTAAATC--CAAAAAATGCCTTTTTCCC--------------CCTGGTAACTTTGATCCCTGGGTTCCCACCATCCTCTGGATCACTGTGACCTTTTTCTTGCTTTGGGTCAGT
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    161596 292 - 204313951 GGTGGAGACCCTGGAGCTGCAGAACCTGATGCTGTGTGCGCTGCAGACCATCTACGGAGCAGAGGCGCGGAAGGAGTCGCGGGGCGCGCACGCCAGAGAAGACTACAAGGTGCGCCTTCTGGCCACAC---CCACCTGCACCTGCCGCTTTCTCCCATCTTGTGTGACTCA-ACCCC-ACCCCTGCATTTTCTCTGCATTTCATTCCATTTCCCCAAAAGTAAATC--CAGAAAGTGCCTTTTCCCC--------------CT------------------GGTTCTCGCCGTCTTCTGCAACACTG--ACCTTTGCTTTGCCTTGGGTCAGT
i calJac3.chr2                 M 577 C 0
s mm10.chr13                    46094604 281 - 120421639 GGTGGAGACCCTGGAGCTGCAGAATCTGATGCTGTGCGCACTGCAGACCATATATGGTGCAGAAGCTCGGAAGGAGTCCCGGGGAGCCCATGCCAGGGAAGATTACAAAGTATGTCT-----CCAGATGCGCCACCTTGACCTGACGTTGC-------------GCACCCAGGTCTC-ATCCCTGCTTGCTTTCTGTGCTTCATTT-ATTTTCCCAAAACAAAATC--AAGGAGAACACTTTTTCCT--------------TC-AATATCTTTTAT-------------TCATATTCTTACTCTCAG--ACCTTTTTCTTGTTTTGAGTTAGC
i mm10.chr13                   C 0 I 1716
s canFam3.chr34                 30184329 328 -  42124431 GGTAGAGACCCTGGAGCTGCAGAACCTGATGCTCTGTGCACTTCAGACCATTTATGGAGCAGAGGCCCGGAAGGAGTCACGTGGCGCTCACGCCAGGGAAGATTACAAGGTGTGCCCTGACCACGTAC---CCCTGTGCACATCATGCCTTCTGTCCACTGGCATTGCTCA-GCCCCTATCCCTGCATTTTCTCTACATTTCACTTCATTTTCCCACGAGTAAATTGAAAAAAAATGCCtttttttttttttttttttttGCCTGATAACTTTCATGCTTTGG-TATCACTGTGTTTAGTATCAGCATGACCTTTTTCTTGCCTCAGATCGGC
i canFam3.chr34                C 0 C 0

a score=206751.000000
s hg38.chr3_KI270935v1_alt         52366 65 +    197351 ATCCACTGATGCCAGCAGTGGCATCTCCAAGCCAATGTGCTTTGCTGTTAGAAGGCCAAGGTTAG
s panTro4.chr3_GL389630_random     16874 65 +    103936 ATCCACTGATGCCAGCAGTGGCATCTCCAAGCCAATGTGCTTTGCTGTTAGAAGGCCAAGGTTAG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199699030 65 + 202140232 ATCCACTGATGCCAGCAGTGGCATCTCCAAGCCAGTGTGCTTTGCTGTTAGAAGGCCAAGATTAG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120797637 65 + 123690457 GTCCACTGATGCCAGCAGTGGCATCTCCAAGCCAATGTGATTTGCTGTTAGAAGGCCAAGGTTAG
i nomLeu3.chr11                C 0 I 302
s rheMac3.chr6                     18023 65 + 180491593 GTCCACTGATGGCAGCAGTGGCATCTCCAAGCCAATGTGCTTTGCTGTTAGAAGGCCAAGTTTAG
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180293058 65 - 181584905 GTCCACTGATGGCAGCAGTGGCATCTCCAAGCCAATGTGCTTTGCTGTTAGAAGGCCAAGTTTAG
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173177308 65 - 174439528 GTCCGCTGATGGCAGCAGTGGCATCTCCAAGCCAATGCGCTTTGCTGTTAGAAGGCCAAGTTTAG
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89624399 65 -  91010382 GTCCACTGATAGCAGCAGTGGCATCTCCAAGCCAATGTGCTTTGCTGTTAGAAGGCCAAGGTTAG
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    161888 65 - 204313951 GGCCACTGATGCCAGCAGTGGCATCTCCAAGCCAAAGTGCTCTGCAGTTAGAGGGCCAAGGTTAG
i calJac3.chr2                 C 0 C 0
s canFam3.chr34                 30184657 64 -  42124431 ATTTGCTGCTGCCAGTAGGAGCATCTCTAAGCAAAACACACCTGACTTACCAGATCAAAGATTA-
i canFam3.chr34                C 0 C 0
e mm10.chr13                    46094885 1716 - 120421639 I

a score=79442.000000
s hg38.chr3_KI270935v1_alt         52431 24 +    197351 AAGTGCAGCCAGCGTGGCATGACC
s panTro4.chr3_GL389630_random     16939 24 +    103936 AAGTGCAGCCAGCATGGCATGACC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199699095 24 + 202140232 AAGTGCAGCCAGAGTGGCATGACC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120798004 24 + 123690457 aaGTGCAGCCAGAGTGTCATGACC
i nomLeu3.chr11                I 302 C 0
s rheMac3.chr6                     18088 24 + 180491593 AAGTGCAGCCAGAGTGGCATGACC
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180293123 24 - 181584905 AAGTGCAGCCAGAGTGGCATGACC
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173177373 24 - 174439528 AAGTGCAGCCAGAGTGGCATGACC
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89624464 24 -  91010382 AAGTGCAGCCAGAGTGGCATGACC
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    161953 24 - 204313951 CAGTGCAGCCGGAGTAGCATGGCC
i calJac3.chr2                 C 0 C 0
s canFam3.chr34                 30184721 24 -  42124431 GTATGCAGTCTGAGTACTATAGCC
i canFam3.chr34                C 0 C 0
e mm10.chr13                    46094885 1716 - 120421639 I

a score=139713.000000
s hg38.chr3_KI270935v1_alt         52455 57 +    197351 AGGAAATAAATGCCAGTTTATTAAATAACGAGTAAGCCACCGTTTCAAGCCTGCCCT
s panTro4.chr3_GL389630_random     16963 57 +    103936 AGGAAATAAATGCCAGTTTATTAAATAACGAGTAAGCCACCGTTTCAAGCCTGCCCT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199699119 56 + 202140232 AGGAAATAAATGCCAGTTTATTAAATAATGAGTAAGCCACCGTTTCGAACCTG-CCT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120798028 57 + 123690457 AGGAAGTAAATGCCAGTTTATTAAATAATGAGTAAGCCACCATTTCAAACCTGCCCT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     18112 57 + 180491593 AGGAAATAAATGCCAGTTTATTAAGTAACGAGTAAGCCACCGTTTCAAATGTGCCCT
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180293147 57 - 181584905 AGGAAATAAATGCCAGTTTATTAAATAACGAGTAAGCTACCGTTTCAGACCTGCCCT
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173177397 57 - 174439528 AGGAAATAAATGCCAGTTTATTAAATAACGATTAAGCCACCGTTTCAAACCTGCCCT
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89624488 57 -  91010382 AGGAAATAAATGCCAGTTTATTTAATAACGGGTAAGCCACCGTTTCAAACCTGCCCT
i chlSab2.chr4                 C 0 C 0
s canFam3.chr34                 30184745 46 -  42124431 AGAAAATA-----------GTAAAATGAGAGATAAATCATTATTTGAGACCTGACTT
i canFam3.chr34                C 0 I 134
e mm10.chr13                    46094885 1716 - 120421639 I
e calJac3.chr2                    161977  0 - 204313951 C

a score=107107.000000
s hg38.chr3_KI270935v1_alt         52512 47 +    197351 ATGGAGGAAATGCCAGTTTATTAAATAACGAGTAAGCCACCGTTTCA
s panTro4.chr3_GL389630_random     17020 47 +    103936 GTGGAGGAAATGCCAGTTTATTAAATAACGAGTAAGCCACCGTTTCA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199699175 43 + 202140232 GTGGAGGAAATGCCAGTTTAT----TAATGAGCAAGTCACTGTTTCA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120798085 47 + 123690457 GTGGAGGAAATGCCAGTTTATTAAATAACGAGTAAGCCACCGTTTCA
i nomLeu3.chr11                C 0 T 102
s rheMac3.chr6                     18169 47 + 180491593 AAGGAGGAAATGCCAGTTTATTAAATAACGAGTAAGCCACCGTTTCA
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180293204 47 - 181584905 AAGGAGGAAATGCCAGTTTATTAAATAACGAGTAAGCCACCGTTTCA
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173177454 47 - 174439528 AAGGAGGAAATGCCAGTTTATTAAATAAGGAGTAAGCCACCGTTTCA
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89624545 47 -  91010382 AAGGAGGAAATGCCAGTTTATTAAGTAACGAGTAAGCCACCGTTTCA
i chlSab2.chr4                 C 0 C 0
e mm10.chr13                    46094885 1716 - 120421639 I
e canFam3.chr34                 30184791 134 -  42124431 I
e calJac3.chr2                    161977  0 - 204313951 C

a score=12786.000000
s hg38.chr3_KI270935v1_alt         52559 9 +    197351 AGCCTGCCC
s panTro4.chr3_GL389630_random     17067 9 +    103936 AGCCTGGCC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199699218 9 + 202140232 GGGCTGCCC
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr6                     18216 9 + 180491593 GACCTGCCC
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180293251 9 - 181584905 GACCTGCCC
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173177501 9 - 174439528 AACCTGCCC
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89624592 9 -  91010382 GACCTGCCC
i chlSab2.chr4                 C 0 C 0
e mm10.chr13                    46094885 1716 - 120421639 I
e canFam3.chr34                 30184791 134 -  42124431 I
e calJac3.chr2                    161977 0 - 204313951 C
e nomLeu3.chr11                120798132 102 + 123690457 T

a score=1480.000000
s hg38.chr3_KI270935v1_alt         52568 3 +    197351 TGT
s panTro4.chr3_GL389630_random     17076 3 +    103936 TGT
i panTro4.chr3_GL389630_random C 0 C 0
s rheMac3.chr6                     18225 3 + 180491593 TGT
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180293260 3 - 181584905 TGT
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173177510 3 - 174439528 GAA
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89624601 3 -  91010382 TGT
i chlSab2.chr4                 C 0 C 0
e mm10.chr13                    46094885 1716 - 120421639 I
e canFam3.chr34                 30184791 134 -  42124431 I
e calJac3.chr2                    161977 0 - 204313951 C
e ponAbe2.chr3                 199699227 0 + 202140232 C
e nomLeu3.chr11                120798132 102 + 123690457 T

a score=171182.000000
s hg38.chr3_KI270935v1_alt         52571 102 +    197351 GGAGGAAAT-GCCAGTTTATTAAATAACGAGTAAGCCACCGTTTCAAGCCTGCCCTGTGGAGGAAAT-GCCAGTTTATTAAATAACGAGTAAGCCACCGTTTCA
s panTro4.chr3_GL389630_random     17079  91 +    103936 GGAGGAAAT-GCCAGTTTATTAAATAACGAGTAAGCCACCGTTTCAAGCCTGCCCTGTGGAGGAAAT-GCCAGTTTATTAAATAACGAGTAAG-----------
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120798030 102 + 123690457 GAAGTAAAT-GCCAGTTTATTAAATAATGAGTAAGCCACCATTTCAAACCTGCCCTGTGGAGGAAAT-GCCAGTTTATTAAATAACGAGTAAGCCACCGTTTCA
i nomLeu3.chr11                T 102 C 0
s rheMac3.chr6                     18228 102 + 180491593 GGAGGAAAT-GCCAGTTTATTAAGTAACGAGTAAGCCACCGTTTCAGACCTGCCCTGTGGAGGAAAT-GCCAGTTTATTAAGTAACGAGTAAGCCACCGTTTCA
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180293263 102 - 181584905 GGAAGAAAT-GCCAGTTTATTAAACAACGAGTAAGCCACCGTTTCAGACCTGCCCTAAGGAGGAAAT-GCCAGTTTATTAAATAACGAGTAAGCCACCGTTTCA
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173177513 104 - 174439528 GGAGGAAATGGCCAGTTTATTAAATAACAAGTAAGCCACCGTTTCAGACCTGCCCTGTGGAGGAAATGGCCAGTTTATTAAATAACAAGTAAGCCACTGTTTCA
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89624604 102 -  91010382 GGAGGAAAT-GCCAGTTTATTAAATAACAAGTAAGCCACCATTTCAGACCTGCCCTAAGGAGGAAAT-GCCAGTTTATTAAATAACGAGTAAGCCACCGTTTCA
i chlSab2.chr4                 C 0 C 0
e mm10.chr13                    46094885 1716 - 120421639 I
e canFam3.chr34                 30184791 134 -  42124431 I
e calJac3.chr2                    161977   0 - 204313951 C
e ponAbe2.chr3                 199699227   0 + 202140232 C

a score=3333.000000
s hg38.chr3_KI270935v1_alt         52673 7 +    197351 AGCCTGC
s nomLeu3.chr11                120798132 7 + 123690457 GACCTGC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     18330 7 + 180491593 GACCTGC
i rheMac3.chr6                 C 0 C 0
s chlSab2.chr4                  89624706 7 -  91010382 GACCTGC
i chlSab2.chr4                 C 0 T 57
e mm10.chr13                    46094885 1716 - 120421639 I
e canFam3.chr34                 30184791 134 -  42124431 I
e calJac3.chr2                    161977 0 - 204313951 C
e macFas5.chr6                 180293365 0 - 181584905 C
e papAnu2.chr6                 173177617 0 - 174439528 C
e ponAbe2.chr3                 199699227 0 + 202140232 C
e panTro4.chr3_GL389630_random     17170 0 +    103936 C

a score=3057.000000
s hg38.chr3_KI270935v1_alt         52680 7 +    197351 CCTGTGG
s nomLeu3.chr11                120798139 7 + 123690457 CCTGTGG
i nomLeu3.chr11                C 0 T 57
s rheMac3.chr6                     18337 7 + 180491593 CCTGTGG
i rheMac3.chr6                 C 0 C 0
s chlSab2.chr4                  89624656 7 -  91010382 CCTAAGG
i chlSab2.chr4                 T 57 C 0
e mm10.chr13                    46094885 1716 - 120421639 I
e canFam3.chr34                 30184791 134 -  42124431 I
e calJac3.chr2                    161977 0 - 204313951 C
e macFas5.chr6                 180293365 0 - 181584905 C
e papAnu2.chr6                 173177617 0 - 174439528 C
e ponAbe2.chr3                 199699227 0 + 202140232 C
e panTro4.chr3_GL389630_random     17170 0 +    103936 C

a score=43769.000000
s hg38.chr3_KI270935v1_alt         52687 50 +    197351 AGGAAATGCCAGTTTATTAAATAACAAGTAAGTCACCGTTTCAGACCTGC
s panTro4.chr3_GL389630_random     17170 18 +    103936 --------------------------------TCACCGTTTCAGACCTGC
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120798089 50 + 123690457 AGGAAATGCCAGTTTATTAAATAACGAGTAAGCCACCGTTTCAGACCTGC
i nomLeu3.chr11                T 57 C 0
s rheMac3.chr6                     18344 50 + 180491593 AGGAAATGCCAGTTTATTAAGTAACGAGTAAGCCACCGTTTCAGACCTGC
i rheMac3.chr6                 C 0 T 57
s chlSab2.chr4                  89624663 50 -  91010382 AGGAAATGCCAGTTTATTAAATAACGAGTAAGCCACCGTTTCAGACCTGC
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    161977 50 - 204313951 AGGAAATGCTAGTTTCTTAAAGAATGAGTCAGTCATCCTTTCAGACCTGC
i calJac3.chr2                 C 0 C 0
e mm10.chr13                    46094885 1716 - 120421639 I
e canFam3.chr34                 30184791 134 -  42124431 I
e macFas5.chr6                 180293365  0 - 181584905 C
e papAnu2.chr6                 173177617  0 - 174439528 C
e ponAbe2.chr3                 199699227  0 + 202140232 C

a score=2345.000000
s hg38.chr3_KI270935v1_alt         52737 2 +    197351 CT
s panTro4.chr3_GL389630_random     17188 2 +    103936 CC
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120798139 2 + 123690457 CC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     18337 2 + 180491593 CC
i rheMac3.chr6                 T 57 C 0
s chlSab2.chr4                  89624713 2 -  91010382 CC
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    162027 2 - 204313951 CC
i calJac3.chr2                 C 0 C 0
e mm10.chr13                    46094885 1716 - 120421639 I
e canFam3.chr34                 30184791 134 -  42124431 I
e macFas5.chr6                 180293365 0 - 181584905 C
e papAnu2.chr6                 173177617 0 - 174439528 C
e ponAbe2.chr3                 199699227 0 + 202140232 C

a score=8892.000000
s hg38.chr3_KI270935v1_alt         52739 5 +    197351 TGTGG
s panTro4.chr3_GL389630_random     17190 5 +    103936 TGTGG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199699227 5 + 202140232 TGTGG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120798141 5 + 123690457 TGTGG
i nomLeu3.chr11                C 0 T 114
s rheMac3.chr6                     18339 5 + 180491593 TGTGG
i rheMac3.chr6                 C 0 C 0
s chlSab2.chr4                  89624715 5 -  91010382 TGTGG
i chlSab2.chr4                 C 0 T 114
s calJac3.chr2                    162029 5 - 204313951 TGGGG
i calJac3.chr2                 C 0 I 3
e mm10.chr13                    46094885 1716 - 120421639 I
e canFam3.chr34                 30184791 134 -  42124431 I
e macFas5.chr6                 180293365 0 - 181584905 C
e papAnu2.chr6                 173177617 0 - 174439528 C

a score=21119.000000
s hg38.chr3_KI270935v1_alt         52744 10 +    197351 AGGAAATGCC
s panTro4.chr3_GL389630_random     17195 10 +    103936 AGGAAATGCC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199699232 10 + 202140232 AGGAAATGCC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120798032 10 + 123690457 AGTAAATGCC
i nomLeu3.chr11                T 114 C 0
s rheMac3.chr6                     18344 10 + 180491593 AGGAAATGCC
i rheMac3.chr6                 C 0 C 0
s chlSab2.chr4                  89624606 10 -  91010382 AGGAAATGCC
i chlSab2.chr4                 T 114 C 0
s calJac3.chr2                    162037 10 - 204313951 GGGAAAGGTC
i calJac3.chr2                 I 3 I 21
s mm10.chr13                    46096601 10 - 120421639 AGGAAATGCT
i mm10.chr13                   I 1716 C 0
e canFam3.chr34                 30184791 134 -  42124431 I
e macFas5.chr6                 180293365  0 - 181584905 C
e papAnu2.chr6                 173177617  0 - 174439528 C

a score=23888.000000
s hg38.chr3_KI270935v1_alt         52754 20 +    197351 AGTTTACTAAATAACGAGTA
s panTro4.chr3_GL389630_random     17205 20 +    103936 AGTTTACTAAATAACGAGTA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199699242 20 + 202140232 AGTTTACTAAATAACGAGTA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120798042 20 + 123690457 AGTTTATTAAATAATGAGTA
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     18354 20 + 180491593 AGTTTATTAAGTAACGAGTA
i rheMac3.chr6                 C 0 I 20
s chlSab2.chr4                  89624616 20 -  91010382 AGTTTATTAAATAACAAGTA
i chlSab2.chr4                 C 0 C 0
s mm10.chr13                    46096611 14 - 120421639 GACTTATTGAGTCA------
i mm10.chr13                   C 0 C 0
e canFam3.chr34                 30184791 134 -  42124431 I
e calJac3.chr2                    162047 21 - 204313951 I
e macFas5.chr6                 180293365  0 - 181584905 C
e papAnu2.chr6                 173177617  0 - 174439528 C

a score=5820.000000
s hg38.chr3_KI270935v1_alt         52774 6 +    197351 AGCCAC
s panTro4.chr3_GL389630_random     17225 6 +    103936 AGCCAC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199699262 6 + 202140232 AGCCAC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120798062 6 + 123690457 AGCCAC
i nomLeu3.chr11                C 0 C 0
s chlSab2.chr4                  89624636 6 -  91010382 AGCCAC
i chlSab2.chr4                 C 0 I 71
e rheMac3.chr6                     18374 20 + 180491593 I
e mm10.chr13                    46096625 0 - 120421639 C
e canFam3.chr34                 30184791 134 -  42124431 I
e calJac3.chr2                    162047 21 - 204313951 I
e macFas5.chr6                 180293365 0 - 181584905 C
e papAnu2.chr6                 173177617 0 - 174439528 C

a score=2999.000000
s hg38.chr3_KI270935v1_alt         52780 7 +    197351 TGTTTCC
s panTro4.chr3_GL389630_random     17231 7 +    103936 TGTTTCA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199699268 7 + 202140232 TGTTTCA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120798068 7 + 123690457 CATTTCA
i nomLeu3.chr11                C 0 I 57
s mm10.chr13                    46096625 3 - 120421639 ----TCA
i mm10.chr13                   C 0 C 0
e rheMac3.chr6                     18374 20 + 180491593 I
e canFam3.chr34                 30184791 134 -  42124431 I
e calJac3.chr2                    162047 21 - 204313951 I
e chlSab2.chr4                  89624642 71 -  91010382 I
e macFas5.chr6                 180293365 0 - 181584905 C
e papAnu2.chr6                 173177617 0 - 174439528 C

a score=14100.000000
s hg38.chr3_KI270935v1_alt         52787 7 +    197351 AACCTGT
s panTro4.chr3_GL389630_random     17238 7 +    103936 AACCTGT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199699275 7 + 202140232 AACCTGT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120798132 7 + 123690457 GACCTGC
i nomLeu3.chr11                I 57 C 0
s macFas5.chr6                 180293365 7 - 181584905 GACCTGC
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173177617 7 - 174439528 GACCTGC
i papAnu2.chr6                 C 0 C 0
s calJac3.chr2                    162068 7 - 204313951 GACCCGC
i calJac3.chr2                 I 21 C 0
s mm10.chr13                    46096628 7 - 120421639 GACCTGT
i mm10.chr13                   C 0 C 0
e rheMac3.chr6                     18374 20 + 180491593 I
e canFam3.chr34                 30184791 134 -  42124431 I
e chlSab2.chr4                  89624642 71 -  91010382 I

a score=111935.000000
s hg38.chr3_KI270935v1_alt         52794 65 +    197351 CCTGTGGTTTGGAAAAGGTATTATAGAGCCTGTCCTGTGGTTTGATTACGGAGACTGCCCTGTGG
s panTro4.chr3_GL389630_random     17245 65 +    103936 CCTGTGGTTTGGAAAAGGTATTATAGAGCCTGTCCTGTGGTTTGATTACGGAGCCTGCCCTGTGG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199699282 65 + 202140232 CCTGTGGTTTGGAAAAGGTATTATAGAGCCTGCCCTGTGGTTTGATTATGGAGCCTGCCCTGTGG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120798139 40 + 123690457 CCTGTGGTTTGGAAAAGGTATTATAGAGC-------------------------CTGCCCTGTGG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     18394 40 + 180491593 CCTGTGGCTTGGAAAAGGTGTTATAGAGC-------------------------CTGCCCTGTGG
i rheMac3.chr6                 I 20 C 0
s macFas5.chr6                 180293372 40 - 181584905 CCTGTGGCTTGGAAAAGGTATTATAGAGC-------------------------CTGCCCTGTGG
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173177624 40 - 174439528 CCTGTGGTTTGGAAAAGGTATTATAGAGC-------------------------CTGCCCTGTGG
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89624713 40 -  91010382 CCTGTGGTTTGGAAAAGGTATTATAGAGC-------------------------CTGCCCTGTGG
i chlSab2.chr4                 I 71 C 0
s calJac3.chr2                    162075 55 - 204313951 CCTGGGGTCTGGGAAAGGTGTTGTAGCTCCTGCACTTGGGTGAC----------CTGCCCTGGGG
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46096635 37 - 120421639 ATTGAGGCTTGGAAAAGGAATTGGAGAT--------------------------CTGCCCTTG--
i mm10.chr13                   C 0 C 0
e canFam3.chr34                 30184791 134 -  42124431 I

a score=7497.000000
s hg38.chr3_KI270935v1_alt         52859 2 +    197351 TC
s panTro4.chr3_GL389630_random     17310 2 +    103936 TC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199699347 2 + 202140232 TC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120798179 2 + 123690457 TC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     18434 2 + 180491593 TC
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180293412 2 - 181584905 TC
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173177664 2 - 174439528 TC
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89624753 2 -  91010382 TC
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    162130 2 - 204313951 TC
i calJac3.chr2                 C 0 I 199
s canFam3.chr34                 30184925 2 -  42124431 cc
i canFam3.chr34                I 134 C 0
e mm10.chr13                    46096672 0 - 120421639 C

a score=391481.000000
s hg38.chr3_KI270935v1_alt         52861 148 +    197351 ACTTGTTCTTCAGATGAACTGATTTTTGTGCAGAGCACACGTGTTGGATTCTGCCTGGTAAGAGTTTTTCACATATGATAGCAAAAAA-CGACGGAAAGGGAAGCTTGGGGTGCAAATGCAAGTTCAGGATAAACCACATCGGCAAAAG
s panTro4.chr3_GL389630_random     17312 149 +    103936 ACTTGTTCTTCAGATGAACTGATTTTTGTGCAGAGCACACGTGTTGGATTCTGCCTGGTAAGAGTTTTTCACATATGATAGCAAAAAAACGACGGAAAGGGAAGCTTGGGGTGCAAATGCAAGTTCAGGATAAACCACATCGGCAAAAG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199699349 148 + 202140232 ACTTGTTCTTCAGATGAACTGATTTTTATGTAGAGCACACGTGTTGGATTCTGCCTGGTAAGAGTTTTTCACATATGATAGCAAAAAA-CCACGGAAAGGGAAGCTTGCAGTGCAAATGCAGGTTCAGGATAAACCACATCAGCAAAAG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120798181 148 + 123690457 ACTTGTTCTTCAGATGAACTGATTTTTGTGCAGAGCACACATGTTGGATTCTGCCTGCTAAGAGTTTTTCACATATGATAGCAAAAAA-CCACAGAAAGGGAAGCTTGGGGTGCAAATGCAAGTTCCGGATAAACCACATCAGCAAAAG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     18436 148 + 180491593 ACTTGTTCTTCAGGTGAACTGATTTTTGTGCAGAGCACACGTGTTGGATTCTGCCTGGTAAGAGTTTCTCACATACGATAGCAGAAAA-ACACGGAAAGGGAAGCTCGGGGCACAAATGCAGGTTCAGGATAAAGCACATCCGCGAAAG
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180293414 148 - 181584905 ACTTGTTCTTCAGGTGAACTGATTTTTGTGCAGAGCACACGTGTTGGATTCTGCCTGGTAAGAGTTTCTCACATACGATAGCAGAAAA-ACACGGAAAGGGAAGCTCGGGGCACAAATGCAGGTTCAGGATAAAGCACATCAGCGAAAG
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173177666 148 - 174439528 ACTTGTTCTTCAGGTGAACTGATTTTTGTGCAGAGCACACGTGTTGGATTCTGCCTGGTAAGAGTTTTTCACATACGATAGCaaaaaa-aCACGGAAAGGGAAGCTTGGGGAACAAATGCAAGTTCAGGATAAACCACATCAGCAAAAG
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89624755 140 -  91010382 ACTTGTTCTTCAGGTGAACTGATTTTTGTGCAGAGCACACGTGTTGGATTCTGCCTGGTAAGAGTTTTTCACATATGATAG---------CACGGAAAGGGAAGCTTGGGGTACAAATGCAAGTTCAGGATAAACCACATCAGCAAAAG
i chlSab2.chr4                 C 0 C 0
s mm10.chr13                    46096672 122 - 120421639 CCATGGTTTTTATGCAAACTGTTGTCTGTACAGAACACACAAGTTGGATTCT------------------ACATGTGGTGGTAAAAAA--CACA-----AGAAGCTTG-GGTGTAGCTCCAAGTTCAGGATGAA-CACATCAACTAGAG
i mm10.chr13                   C 0 I 581
s canFam3.chr34                 30184927 140 -  42124431 AGGTGCCCCATAAATTACATGATTTTTATGCAGAGTACA--GTTCAGATTCTTCCAGAACAGAGACTCA-GCGTATGACAGGAAAATG-GGAAGGAAATAGGCACTTGAGGC-CAAATACAACTTCAGGATGCA--ACATCAGCAAG--
i canFam3.chr34                C 0 C 0
e calJac3.chr2                    162132 199 - 204313951 I

a score=193722.000000
s hg38.chr3_KI270935v1_alt         53009 80 +    197351 GACAAAGGCTCCACAAGGCAGGCGCACAGG--CTGGTTCAGGGCCATGTGTGGGCGGCTGGTGGCAGCCTTTCCAGTCAGCT
s panTro4.chr3_GL389630_random     17461 80 +    103936 GACAAAGGCTCCACAAGGCAGGCACACAGG--CTGGTTCAGGACCATGTGTGGGCGGCTGGTGGCAGCCTTTCCAGTCAGCT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199699497 80 + 202140232 GACAAAGGCTCCACAAGGCAGGCACACAGG--CTGGTTCAGGACCCTGTGTGGGCGGCTGGTGGCAGCCTTTCCAGTCAGCT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120798329 78 + 123690457 GACAAAGGCTCCACAAGGCAGGCACACAGG--CTGGTTCAGGAC--TGTGTGGGCAGCTGGTGGCAGCCTTTCCAGTCAGCT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     18584 80 + 180491593 GACAAAGGCTGCACGAGGCAGGCACGCAGG--CTGGTTCAGGACCGTGTGTGGGCGGCGGCTGGTGACCTTTCCAGCCCGCC
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180293562 80 - 181584905 GACAAAGGCTGCACGAGGCAGGCACACAGG--CTGGTTCAGGACCGTGTGTGGGCGGCGGCTGGTGACCTTTCCAGCCCGCT
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173177814 80 - 174439528 GACAAAGGCTGCACAAGGCAGGCACACAGG--CTGGTTCAGGACCGTGTGTGGGCGGCTGCTGGCGGCCTTTCCAGTCAGCT
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89624895 80 -  91010382 GACAAAGGCTGCACGAGGCAGGCACACAGG--CTGGTTCAGGACCGTGTGTGGGCGGCGGCCGGCAGCCTTTCCAGTCAGCT
i chlSab2.chr4                 C 0 C 0
s canFam3.chr34                 30185067 78 -  42124431 GCCTGAG---CCGCTTTCCAGACACACAGGCTCTGGCCCAGGACCAGGTG-ATGTTGCTGGTAGCAGCCTCGTCCATCAGCA
i canFam3.chr34                C 0 C 0
e mm10.chr13                    46096794 581 - 120421639 I
e calJac3.chr2                    162132 199 - 204313951 I

a score=179253.000000
s hg38.chr3_KI270935v1_alt         53089 62 +    197351 -GAACACAGTGAATGGGAAAATC--------------------ATTTTTATTCACCATGAAATTTTACTGATTTACCCTCCAC
s panTro4.chr3_GL389630_random     17541 62 +    103936 -GAACACGGTGAATGGGAAAATC--------------------ATTTTTATTGACCATGAAATTTTACTGATTTACCCTCCAC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199699577 62 + 202140232 -GAACATAGTGAATGGGAAAATC--------------------ATTTTTATTCACCATGAAATTTTACTGATTTACCCTCCAC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120798407 62 + 123690457 -GAACACGGTGAATGGGAAAATC--------------------ATTTTTATTCACCATGAAATTTTACTGATTTACCCTCCAC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     18664 61 + 180491593 -GAGCGCGGTGAGTGGG-AGATC--------------------ATTTTTATTCACCATGAAATTTCACCGATTTACCCTCCAC
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180293642 61 - 181584905 -GAGCGCGGTGAGTGGG-AAATC--------------------ATTTTTATTCACCATGAAATTTCACCGATTTACCCTCCAC
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173177894 61 - 174439528 -GAACACGGTGAGTGGG-AAATC--------------------ATTTTTATTCACCATGAAATTTTACCGATTTACCCTCCAC
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89624975 61 -  91010382 -GAGCACGGTGAGTGGG-AAATC--------------------ATTTTTATTCACCATGAAATTTTACCGATTTACCCTCCAC
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    162331 62 - 204313951 -GAACACAGTGAATGGGAAAATG--------------------ACTTGTGTTTACTGTGAAATGGTACTGATGTAGCCTCCAC
i calJac3.chr2                 I 199 C 0
s canFam3.chr34                 30185145 83 -  42124431 GGACAGAAGCACATGGGGAAATTGGCTACAGGAAGAGGATTAGGTTCTGATTTACAGTGAAATTCTGTTAATTTGCCCTCCAC
i canFam3.chr34                C 0 I 1614
e mm10.chr13                    46096794 581 - 120421639 I

a score=408627.000000
s hg38.chr3_KI270935v1_alt         53151 150 +    197351 TAGAATATGCTGATGGCTGTGATCACTGCTCAGAATTTGCTC--GTCTCCTCATACATA-TTAAGAGTCTTTCCTGCAAAGTATATGAATCCGTGTTTGCCAGAATACAGAATAATA--ATAAAtttattattttt------aattttttgagatggagtc-----
s panTro4.chr3_GL389630_random     17603 156 +    103936 TAGAATATGCTGATGGCTGTGATCACTGCTCAGAACTTGCTC--GTCTCCTCATACATA-TTAAGAGTCTTTCCTGCAAAGTATATGAATCCGTTTTTGCCAGAATACAGAATAATA--ATAAAtttattatttttgtttttatttttttgagatggagtc-----
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199699639 150 + 202140232 TAGAATATGCTGATGGCTGTGATCACTGCTCAGAACTTGCTC--GTCTCCTCGTACTTA-TTAAAAGTCTTTCCTGCAAAGTATATGAATTCGTGTTTGCCAGGATACAGAATAATA--ATAAAtttattattttt------aatattttgagatggagtc-----
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120798469 156 + 123690457 TAGAATATGCTGATGGCTGTGATCACTGCTCAGAACTTGCTC--GTCTCCTCATACATA-TTAAGAGTCTTTCCTGCAAAGTATATGAATCCGTCTTTGCCAGAATACAGAATAATA--ATAAAtttattgtttttatttttatttttttgagatggagtc-----
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     18725 157 + 180491593 TGGAATATGCTGATGGCTGTGATCACTGCTCGGAACTTGCTCTTGCCTCCTTGTACATA-TTAAGAGTCTTTCCTGCGAAGTATATGAATCCGTGTTTGCCAGAATACAGaataata--ataaatttatca-ttttatttttatttttttGAGATGGAGTC-----
i rheMac3.chr6                 C 0 M 314
s macFas5.chr6                 180293703 158 - 181584905 TGGAATATGCTGATGGCTGTGATCACTGCTCGGAACTTGCTCTTGCCTCCTTGTACATA-TTAAGAGTCTTTCCTGCGAAGTATATGAATCCGTGTTTGCCAGAATACAGAATAATA--ATAAATTTATCACttttatttttatttttttgagatggagtc-----
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173177955 152 - 174439528 TGGAATATGCTGATGGCTGTAATCACTGCTCGAAACTTGCTCTTGCCTCCTTGTACATA-TTAAGAGTCTTTCCTGCGAAGTATATGAATCCGTGTTTGCCAGAatacagaataata--ataaatttatta------tttttatttttttgagatggagtc-----
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89625036 159 -  91010382 TGGAATATGCTGATGGCTGTGATCACTGCTCAGAACTTGCTCTTGCCTCCTTGTACATATTTAAGAGTCTTTCCTGCAAAGTATATGAATCCGTGTTTGCCAGAATACAGAATAATA--ATAAAtttttaatttttatttttatttttttgagatgaagtc-----
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    162393 158 - 204313951 TAGAATATGCTGATGGCTGTAGTCCCTGCTCAGAACTTGTTC-TTCCTCCTTGTACAGT-GTAAGAGTCTTTCCTGCAAAGTACATGAATCCGTGTTTGCCAGAATACAG-ATAGTAGCATACAtttattattattatta-----tttttgagatgaagtagtctc
i calJac3.chr2                 C 0 C 0
e mm10.chr13                    46096794 581 - 120421639 I
e canFam3.chr34                 30185228 1614 -  42124431 I

a score=560602.000000
s hg38.chr3_KI270935v1_alt         53301 265 +    197351 tcattgtcccccaggctggagtgcagcggcgcgatctcagctcactgcaacctctgcctcccaggttcaagtgattctcctgcctcagcctcccaagcagctggggttacaggcgcatgccaccgtgcccggctaa-ttttgtattttcagtaaagacggggtttcaccatgttggccaggctagtctcgaactcccgacctcaagtgaaccacccaccttggccttccaaagtgctaggattacaggcatgagccactgtgcctg
s panTro4.chr3_GL389630_random     17759 264 +    103936 tcattgtcccccaggctggagtgcagcggcgcgatctcagctcactgcaacctctgcctcccgggttcaagtgattctcctgcctcagcctcccaagcagctggggttacaggcgcatgccaccatgcctggctaa-ttttgtattttcagtggagatggggtttcaccatgttggccgggctggtctcaaac-cccgacctcaagtgaaccacccaccttggccttccaaagtgctaggattacaggcatgagccactgtgcctg
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199699789 265 + 202140232 tcactctctcccaggctagagtgcagtggtgcgatctcagctcactgcaccctctgcctcccaggtacaagtgattctcctgtctcagcctcccaagcagctgggattacaggcgtgtgccaccattcccggctaa-ttttgtattttcagtaaagacagggtttcaccatgttggctgggctggtctcgaactcctgacctcaagtgaaccacccacctcggcctcccaaagtgctaggattacaggcatcagccactgtgcccg
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120798625 265 + 123690457 tcactgtcccccaggctggagtgcagcggcgcgatctcagctcactgcaacctctgcctcctgggttcaagtgattctcctgcctcagcctcccaagtagctgggattacagacgcatgccaccatgcctggctaa-ttttgcattttcaatagagacggggtttcaccatgttggccgagctggtctcgaactcctgacctcaagtgaaccacccaccttggcctcccaaagtgctaggattacaggcaggagccactgtgcctg
i nomLeu3.chr11                C 0 C 0
s macFas5.chr6                 180293861 262 - 181584905 --tctgtcccccaggctggaatgcaatggcgcaatctcagctcactgcaagctctgcctccagggttcaagtgattctcctgcctcagcctcccaagcagctgggattacagacgcacgccaccgtgcctggctaa-ttttgtattttcagtagagtt-gggtttcaccatgttggccgggctggtcttgaactcgtgacctcaagtgaaccacctacctcaacctcccaaagtgctaggattacaggcgtgagccactgcgccta
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173178107 263 - 174439528 --tctgtcccccaggctggaatgcaatggcacaatctcagctcactgcaagctctgcctccagggttcaagtgattctcctgcctcagcttcccaagcagctgggattacagacgcatgccaccatgcctggctaa-ttttctattttcagtagagttggggtttcaccatgttggccgggctggtcttgaactcctgacctcaagtgaaccacacacctcggcctcccaaagtgctaggattgcaggcgtgagccactgtgcctc
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89625195 265 -  91010382 ttgctgtcccccaggctgaagtgcagtggcgcgatctcagctcactgcaagctctgcctcccgggttcaagtgattctcctgcctcagcctcccaagcaggtgggattacagatgcatgccaccatgcctggctaa-ttttgtattttcagtagagttggggtttcaccatgttggccgggctggtcttgaactcctgacctcaagtgaaccacacacctcggcctcccaaagtgctgggattacaggcgtgagccactgtgcctg
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    162551 239 - 204313951 gctctgtcacctaggctggagtgcagtggtgcgatcttggctcactacaacttccacctcccaggttcaagcgattctcctgcctcagcctcctgagtagctaggactacaggtgcacaccatcacacctggctaatttttgtatttttagtagagacagggtttcaccatgttgtccag---------------------------gaaccactcaccttggcttcccaaagtgctaggattataggcgtgagccactgtgccct
i calJac3.chr2                 C 0 C 0
e rheMac3.chr6                     18882 314 + 180491593 M
e mm10.chr13                    46096794 581 - 120421639 I
e canFam3.chr34                 30185228 1614 -  42124431 I

a score=769410.000000
s hg38.chr3_KI270935v1_alt         53566 298 +    197351 gccAGGAGCATAAATTTAGTTGGTGACAACGAGTTTTAATTAGAATAGAAgccaggtgcagtggctcccacctgtaatcccagcatttgggaggctgaggcaggcagatcacttgagccccggagttctagaccagcctgggcaacatggcgaaacctgtctctacaaaaat----taaaaaattagccaggcgtggtggtacacacctgaggtaccagctgctcaggaggctgaggcaggatgattgattgagcccgggaagtcaaggctctggcgagctgtgatcacaccattgcgctcc
s panTro4.chr3_GL389630_random     18023 298 +    103936 gccAGGAGCATAAATTTAGTTGGTGAAAACGAGTTTTAATTAGAATAGAAgccaggtgcagtggctcccacttgtaatcccagcatttgggaggctgaggcaggcaaatcacttgagccccagagttctagaccagcctgggcaacatggcgaaacctgtctctacaaaaat----taaaaaattagccaggcgtggtggtacacacctgacgtaccagctgctcaggaggctgaggcaggatgagtgattgagcccgggaagtcaaggccctggcgagctgtgatcacaccattgcgctcc
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199700054 296 + 202140232 gccAGT-GCATAAATTTAGTTGGTGACAGCGAGTTTTAATTAGAATAGAagccaggtgcagtgattcccacctgtaatcccagcatttgggaggctgaggcaggcagatcacttgag-cccagagttctagaccagcctgggcaacatggcaaaacctgtctctacaaaaat----taaaaaattagccaggtgtggtggtacacgcctgaagtaccagctgctcaggtggctgaggcaggataattgattgagcccgggaagtcaaggctctggcgaactgtgatcacaccattgcactcc
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120798890 294 + 123690457 accAGGAGCATAAATTTAGTTGGTGACAATGAGTTTTAATTAGAATAGAAgccaggtgcagtggctcccacctgtaatcccagcatttgggaggctgaggcaggcagatcacttgagccccagacttctagaccagcctgggcaacatggcgaaacctgtctctacaaaaat----taaaaaattagccaggtgtggtggtacatgcctgaagtaccagctgctcaggaggctgaggcaaga----tgattgagcctgggaagtcaagtctccggcgagctgtgctcacaccattgcactcc
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     19196 270 + 180491593 GCCAGTAGTATAAATTCAGTTGGTCACAATGAGTTTTAATTAGAATAGAAgccaggtgcagtggctcacgcctgtaatcccagcatttgggaggctgaggcaggcagatcacttgag-cctggagttctagaccatcctgggcaacatggcgaaacctgtctctacacaaaa---------aattagccaggcgtggtggtacgtg------------------caggaggctgaggcagga----tgattgagcctggaaagtcaaggctccagcaagctgtgatcacaccactgcactcc
i rheMac3.chr6                 M 314 C 0
s macFas5.chr6                 180294123 270 - 181584905 gccAGTAGTATAAATTCAGTTGGTCACAATGAGTTTTAATTAGAATAGAAgccaggtgcagtggctcacgcctctaatcccagcatttgggaggctgaggcaggcagatcacttgag-cctggagttctagaccagcctgggcaacatggcgaaacctgtctctacacaaaa---------aattagccaggcgtggtggtacgtg------------------caggaggctgaggcagga----tgattgagcctgggaagtcaaggctccagcaagctgtgatcacaccactgcactcc
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173178370 280 - 174439528 gccaGTAGCATAAATTCAGTTGGTCACAGCAAGTTTTAATTAGAatagaagccaggtgcagtggctcacacctgtaatcccagcatttgggaggctgaggcaggcagatcacttgag-cctggagttctagaccagcctgggcaacatggcaaaacctgtctctacaaaaaa---ataaataattagccaggcgtggtggtacgca------------------caggaggctgaggtaggatgattgattgagcccgggaagtcaaggctccagcaagctgtgatcacaccactgcactcc
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89625460 280 -  91010382 gccAGTAGCATAAATTCAGTTGGTCACAACAAGTTTTAATTAGAATAGAAgccaggtgcagtggctcacacctgtaatcccagcatttgggaggctgaggcaggcagatcacttgat-cccggagttctagaccagcctgggcaacatggcgaaacctgtctctacacaaaa---ataaaaaattagccaggcgtggtggtacgca------------------caggaggctgaggcaggatgattgattgagccggggaagtcaaggctccagcgagctgtgatcacaccactgcactcc
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    162790 272 - 204313951 gccAGTAGCATAAATTTAGTGGATCACAGCAAGTTTCAATTAGAATATAAgccaggcacagtggctcacacctataatcccagcatttgggaggctgaggcaggcagatcacttgagccccagagttctagaccagcttgggcaacatggcaaaacctgtctctaaaaaaaaagaataaaaaatta-----------------------------ccagctgctcaggaggctgaggcaggatgagtgattgag-ctgggaagtcaaggctccagtgagctgtgatatcaccactgcactcc
i calJac3.chr2                 C 0 C 0
e mm10.chr13                    46096794 581 - 120421639 I
e canFam3.chr34                 30185228 1614 -  42124431 I

a score=744630.000000
s hg38.chr3_KI270935v1_alt         53864 276 +    197351 agcccaggtgacatagcgagaccctgtctcaaaagagaaaaaaaG----TGTTTtt---aataaaaacaggctgaaagaaaagatgg-------aggtagtctcccagcgcttggagcaaaaagacaaa----gTATTTGATA---AACTCT--TAGGTACATAAAGGATGTCTAAGGGAACATGCGGACATGGAT----TACTCTGGACTCACTGCTGGCTGCACA-TCGCTGGCCAGCCATGTGGCCTCTGTGGGTTCTGAACGTGTTGATGGTGCCAACCTCCTGGGCTGAAGTGGAAATG
s panTro4.chr3_GL389630_random     18321 275 +    103936 agcccaggtgacatagcgagaccctgtctcaaaaga-aaaaaaaG----TGTTTtt---aataaaaacaggctgaaagaaaagatgg-------aggtagtctcccagcgcttggagcaaaaagacaaa----gTATTTGATA---AACTCT--TAGGTACATAAAGGATGTCTAAGGGAACATGCGGACATGGAT----TACTCTGGACTCACTGCTGGCTGCACA-TCGCTGGCCAGCCATGTGGCCTCTGTGGGTTCTGAACGTGTTGATGGTGCCAACCTCCTGGGCTGAAGTGGAAATG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199700350 274 + 202140232 agcccaggtgacatagcgagaccctgtctccaaaga-aaaaaaaa----TATTTTT---GATTAAAACAGGCTGAAAGAAAAGATTG-------AGGTAGTCTCCCAGCGCTTGGAGCAAAAAGACAAA----GTATTTGATA---AACTCT--AAGGTACATAAAGGATGTCTAAGGGAACATGCAGACATGGAT----TACTCTGGACTCACTGCTGGCTGCACA-CCCCTGGCCAGCCATGTGGCCTCTGTGGGTTCTGAATGTGTTGATGGCGCCAGCCTCCTGGGCTGAA-TGGAAATG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120799184 272 + 123690457 agcccaggtgacatagcgagaccctgtctcaaaaga----aaaaa----TTTCTTT---AATAAAAACAGGCTGAAAGAAAGGATTG-------AGGTAGTTTCCTAGTGCATGGAGCAAAAAGACAAA----GTATTTGATA---AACTCT--TAGGTACATAAAGGATGTCTAAGGGAACATGCGGACATGGAT----TACTCTGGACTCGCTGCTGGCTGCACA-CCCCTGGCCACCCATGTGTCCTCTGTGGGTTCTGAACCTGTTGATGGTGCCAACCTCCTGGGCTGAAGTGGAAATG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     19466 274 + 180491593 agcctgggtgacattgcgagagcctgtctcaaaaga----aaaaa----TGTTTTT--AAATAAAAACAGGCTGAAAGAAAAGATTGAGGTAGTAGGTAGTCTCCCAGCGCATGCAGCAGAAAGACAAA----GTATTTGGTA---AACTCT--TAGGTACATAAAGGGTGTCTAAGGGAACGTGCGGACACGGAT----TACTCTGGACTCACTGCTGGCTGCACACCCCCTGACCAGCCATGTGGCCTCCTTGGGTTCTGAACATGTTGATGGTGCCG-------GGGCTGAAGTGGAAATG
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180294393 274 - 181584905 agcctgggtgacattgcgagagcctatctcaaaaga----aaaaa----TGTTTTT--AAATAAAAACAGGCTGAAAGAAAAGATTGAGGTAGTAGGTAGTCTCCCAGCGCATGCAGCAGAAAGACAAA----GTATTTGGTA---AACTCT--TAGGTACATAAAGGGTGTCTAAGGGAACGTGCGGACACGGAT----TACTCTGGACTCACTGCTGGCTGCACACCCCCTGACCAGCCATGTGGCCTCCTTGGGTTCTGAACATGTTGATGGTGCCG-------GGGCTGAAGTGGAAATG
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173178650 274 - 174439528 agcccaggtgacatagtgagagcctgtctcaaaaga----aaaaa----tgttttt--aaataaaaacaggctgaaagaaaaGATTGAGGTAGAAGGTAGTCTCCCAGCGCATGCACCAGAAAGACAAA----GTATTTGGTA---AACTCT--TAGGTACATAAAGGGAGTTTAAGGGAACGTGCGGACATGGAT----TACTCTGGACTCACTGCTGGCTGCACACCCCCTGGCCAGCCATGTGGCCTCCGTGGGTTCTGAACATGTTGATGGTGCCA-------GGGCTGAAGTGGAAATG
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89625740 278 -  91010382 agcctgggtgacatagcgagagcctgtctcaaaaga----aaaacaaGTTTTTTTT--AAATAAAAACAGGCTGAAAGAGAAGATGGAGGTAGTAGGTAGTCCCCCAGCGCGTGCAGCAGAAAGACAAA----GTATTTGGTG---AACTCT--CAGGTACATAAAGGGTGTCTGAGGGAACGTGCGGACACGGAT----TCCTCTGGACTCACTGCTGGCTGCACACCCCCTGGCCAGCCATGTGGCCTCCGTGGGTTCTGAACATGTTGATGGTGCCG-------GGGCTGATGTGGAAATG
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    163062 272 - 204313951 agcccacgtgacatagcgagatcctgtctcaaaaga----aagaa----TTTTTTTAAAAATAGAAACATGCTGAAAGAAAAGATTG-------AGGTGGTCACCCAGAGCATGGGGTAAAAAGACAAA----GTATCTGATA---AACTCT--TAGGTACATGAAGGATGTCT-AGGGAAAATGCAGGCATGGAT----TACCCTGGACTCACTGCTGGCTGCA---CCGCTGACCAGCTATGTGGCCTCAGTGGATTCTGAGCATGTTGATGGTGCCAGCCTCCTGGGCTGAAGTGAAAATG
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46097375 233 - 120421639 agccagggcaatgtagagagaccctgtctcaaaaca----aaaGC----CCATTTA---AATTAAAA-ATGCTGAAGAGAAAAGCTG-------ACGAAATCTC--AGTGCATGGAGTCAAAGGAAAAATGACGTAAGTGATATTTAATTCTAATATCTACTTACAGAGC-TGTGAGAGAAAATGCAGAAGTGGATGTTGTACATTTG---CATTCCTGGCTCTAAAGCCCTTTGTC----------------------------------ATAGTGTTTACTTCCTGGGCT------------
i mm10.chr13                   I 581 C 0
e canFam3.chr34                 30185228 1614 -  42124431 I

a score=1841563.000000
s hg38.chr3_KI270935v1_alt         54140 531 +    197351 GAATGGGTTCTAGGGCATC-------------TGTCTCTTAGATCATTTTAAT--GTTTGCTGTG-TTTTTT--CTGTATTGCTCTGTTAGAGTAATGAGAAAT--------------GTGATGGTGTTT--------------------CTGGCCTCAGGTGCAGATTGATGAGTATGATCACTCCAAGCCCATCCAGGGGCAACAGAAGAAGCCCTTTGAGGTGCACTGGAGGAAGCACACCCTGTCCTATGTGGACGTCGGCACTGGGAAGGTCAGTGTGGAGCTCGTTCTCACCACAGC----CCAGCACCCACACGGCCCCGCCCAGGTCTGCGGGCTGGCCTTGCTGATGGTGAACGCG---GAGGAGCAGGCCAGATTTAAATCAACTCCCGACAGATTTGAGGCACCGCTGAAAAAGGCACTCTGACAGCAGTCGGGCTTCGGGCTGGAAACAGAATCCAGTGCCTGCAGGTGGTTCA-GAGGAGCCTTAA-GGAAGGGTTGCT--CTGTGGTGTGGGCCAGATGGAAGTCACTGGGCAG-GAGCAAGTGTCCAAGGCCTGGTGGCAGGGGAGGAGATGATGATTGT
s panTro4.chr3_GL389630_random     18596 531 +    103936 GAATGAGTTCTAGGGCATC-------------TGTCTCTTAGATCATTTTAAT--GTTTGCTGTG-TTTTTT--CTGTATTGCTCTGTTGGAGTAATGAGAAAT--------------GTGATGGTGTTT--------------------CTGGCCTCAGGTGCGGATCGATGAGTACGATCACTCCAAGCCCATCCAGGGGCAACAGAAGAAGCCCTTTGAGGAGCACTGGAGGAAGCACACCCTGTCCTATGTGGACGTCAGCACTGGGAAGGTCAGTGTGGAGCTCTTTCTCACCACAGC----CCAGCACCCACACGGCCCCGCCCAGGTCTGCGGGCTGGCCTTGCTGATGGTGAACACG---GAGGAGCAGGCCAGATTTAAATCAACTCCGGACAGATTTGAGGCACCGCTGAAAAAGGCACTCTGACAGCAGTCGGGCTTCGGGCTGGAAACAGAATCCAGTGCCTGCAGGTGGTTCA-GAGGAGCCTTAA-GGAAGGGTTGCT--CCGTGGTGTGGGCCGGATGGAAGTCACTGGGCAG-GAGCAAGTGTCCAAGGCCTGGTGGCAGGGGAGGAGATGATGATTGT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199700624 533 + 202140232 GAATGAGTTCTAGGGCATC-------------TGTCTCTTAGATCATTTTAAT--GTTTGCTGTGTTTTTTT--CTGTATTGCTCTGTTAGAGTAATAAGAAAT--------------GTGATTGTGTGT--------------------CTGGCCTCAGGTGTGGATTAATGAGTACGATCACTCCAAGCCCATCCAGGGGCAGCAGAAGAAGCCCTTTGAGGAGCACTGGAGGAAGCACACCCTGTCCTATGTGGACGTCAGCACTGGGAAGGTCAGTGTGGAGCTTGTTCTCACCGCAGC----CCAGCACCCACACAGCCCCGCCCAGGTCTGCGGGCTGGCCTTGCTGATGGTGAACGGG---GAGGAGCAGGCCAGATTTAAATCAACTCCTGACAGATTTGAGGCACCACTGAAAAAGGCACTCTGACAGCAGTCAGGCTTCGGGCTGGAAACAGAATCCAGTGCCTGCAGGTGATTCA-GAGGAGCCTTAAGGGAAGGGTTGCT--CCATGGTGTGGGCCAGATGGAAGTCACTGGGCAG-GAGCAAGTGTCCAAGGCCTGGTGATAGGGGAAGAGATGATGATTGT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120799456 526 + 123690457 GAATGAGTTCTAGGGCATC-------------TGTCTCTTAGATCATTTTAAT--GTTTGCTGTG-TTTTTT--CTGTGTTGCTCTGTTAGAGTAATGAGAAAT--------------GTGATGGTGTTT--------------------CTGGCGTCAGGTGTGGATTAATGAGTGCGATCACTCCAAGCCCATCGAGGGGAAACAGAAGAAGCCCTTTGAGAAGCACTGGAGGAAGCACACCCTGTCCTATTTGGACGTCAGCACTGGGAAGGTCAGTGTGGAGCTTGTTCTCACCACAGC----CCAGCACCCACACGGCCCCACCCAGGTCTGCAGGCTGGCCTTGCTGATGGTGAACGGG---GAGGAGCAGGCCAGATTTAAATCAACTCCTGACAGATTTGAGGCACCACTGAAAAA-GCACTCTGAC-GCAGTCAGGCTTCGGGCTGGAGACAAAATCCAGTGCCTGCAGGTGGTTCA-GAGGAGCCTTAA-GGAGGGGTTGCT--CCGTGGTGTGGGCCAGATGGAAGTCCCTGGGCAG-GAGCAAGTGTCCAAGGCCTGGTGGCAGGGGAGGA---GATGATTGT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     19740 530 + 180491593 GAATGAGTTCTAGGGCATC-------------TGTCTCTTAGATCATTTTAAT--GTTTGCTGTG-TTTTTT--CTGTATTGCTCTGTTAGAGTAATAAGATAT--------------GTGATGGTGTTT--------------------CTGGCCTCAGGTGCGGATTGATGAGTACGATTACTCCAAGCCCATCCAGGGGCAACAGAAGAAGCCTTTTGAGGAGCACTGGAGGAAGCACACCCTGTCCTATGTGGACGTCAGCACTGGGAAGGTCAGTGTGGAGCTCGTTCTCACCACAAC----CCAAAATGCGCACGGCCCTGCCCAGGTTCACGGGCCGACCTTGCTGATGGTGAACGGG---GAGGAGCAGGCCAGATTTAAATCAACTCCTGACAGATTTGAGGCACCACTGAAAAAGGC-CTCTGACAGCAGTCAGGCTTCTGGCTGGAAACAGAATCCAGCGCCTGCAGGTGGTTCA-GAGGAGCCTTAA-GGAAGGGCTGTT--CCGTGGTGTGGGCCAGATGGAAGTCACTGGGCAG-GAGCAAGTGTCCAAGGCCTGGTGAGCGGGGAGGAGATGAGGATTAT
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180294667 530 - 181584905 GAATGAGTTCTAGGGCATC-------------TGTCTCTTAGATCATTTTAAT--GTTTGCTGTG-TTTTTT--CTGTATTGCTCTGTTAGAGTAATAAGATAT--------------GTGATGGTGTTT--------------------CTGGCCTCAGGTGCGGATTGATGAGTACGATTACTCCAAGCCCATCCAGGGGCAACAGAAGAAGCCTTTTGAGGAGCACTGGAGGAAGCACACCCTGTCCTATGTGGACGTCAGCACTGGGAAGGTCAGTGTGGAGCTCGTTCTCACCACAAC----CCAAAATGCGCACGGCCCTGCCCAGGTTCACGGGCCGACCTTGCTGATGGTGAACGGG---GAGGAGCAGGCCAGATTTAAATCAACTCCTGACAGATTTGAGGCACCACTGAAAAAGGC-CTCTGACAGCAGTCAGGCTTCTGGCTGGAAACAGAATCCAGCGCCTGCAGGTGGTTCA-GAGGAGCCTTAA-GGAAGGGCTGCT--CCGTGGTGTGGGCCAGATGGAAGTCACTGGGCAG-GAGCAAGTGTCCAAGGCCTGGTGAGCGGGGAGGAGATGAGGATTGT
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173178924 531 - 174439528 GAATGAGTTCTAGGGCATC-------------TGTCTCTTAGATCATTTTAAT--GTTTGCTGTG-TTTTTT--CTGTATTGCTCTGTTAGAGTAATAAGATAT--------------GTGATGGTGTTT--------------------CTGGCCTCAGGTGCGGATTGATGAGTATGATTACTCCAAGCCCATCCAGGGGCAACAGAAGAAGCCCTTTGAGGAGCACTGGAGGAAGCACACCCTGTCCTATGTGGACGTCAGCACTGGGAAGGTCAGTGTGGAGCCCGTTCTCACCACAGC----CCAAAATGCGCATGGCCCCGCCCAGGTTCACAGGCCGACCTTGCTGATGGTGAACCGG---GAGGAGCAGGCCGGATTTAAATCAACTCCTGACAGATTTGAGGCACCACTGAAAAAGGCACTCTGACAGCAGTCAGGCTTCTGGCTGGAAACAGAATCCAGCGCCTGCAAGTGGTTCA-GAGGAGCCTTAA-GGAAGGGCTGCT--CCGTGGTGTGGGCCAGATGGAAGTCACTGGGCAG-GAGCAAGTGTCCAAGGCctggtgggtggggaggagatGAGGATTGT
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89626018 530 -  91010382 GAATGAGTTCTAGGGCATC-------------TGTCTCTTAGATCATTTTAAT--GTTTGCTGTG-TTTTTT--CTGTATTGCTCTGTTAGAGTAATAAGATAC--------------GTGATGGTGTTT--------------------CTGGCCTCAGGTGCGGATTGATGAGTACGATTACTCCAAGCCCATCCAGGGGCAACAGAAGAAGCCCTTTGAGGAGCACTGGAGGAAGCACACCCTGTCCTACGTGGACGTCAGCACTGGGAAGGTCAGTGTGGAGCTGGTTCTCACCACAGC----CCAAAATGCGCACGGCCCCGCCCAGGTTCGCGGGCTGACCTTGCTGATGGTGAACCGG---GAGGAGCAGGCCGGATTTAAATCAACTCCTGACAGATTTGAGGCACCACTGAAACAGGCACTCTGACAGCAGTCAGGCTTCTGGCTGGAAACCGAATCCAGCGCCTGCAGGTGGCTCA-GAGGAGCCTTGA-GGAAGGGCTGCT--CCGTGGTGTGGGCCAGATGGAAGTCCCTGGGCAG-GAGCAAGTGTCCAAGGCCTGGTG-GCGGGGAGGAGATGAGGATTGT
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    163334 515 - 204313951 GAATGAGTTCTAGGCCATG-------------TGTCTCTTACGTCATTTTAAT--GTTTGCTGTG--TTTTT--CTGTATTGCTCTGTTAGAGTAATAAGAAAT--------------GTGATGGTGTTT--------------------CTGGCCTCAGGTGCGGATTGATGAGTACGATTACTCCAAACCCATCCAGGGGCAACAGAAGAAGCCCTTTGAGGAGCACTGGAGGAAGCACACCCTGTCCTATGTGGACGTGGGCACTGGGAAGGTCAGTGTGGACTTTGTTCTCACCACAGC------------CGCCCCGCCCCACCCAGGTCTGCAGGCTGGCCTTGCTGATGGTGAATGGG---GAGAAGCAGGCCAGATTTAAGCCAGC-ACTGACAGATGTGAGGCACCACTGAGAAA-GCACTCTG---TCAGTCAGGCTTCTGGCCAGAAAC-GGATCCAGTGCCTGTGAGTGGTTCA-GAGGAGCCTTA--GGAAGGGTTGCT--CCGTGGTGTGGGCCAAATGGAAGTCACTGGACAG-GAGCAAGTGTCCAAGGCCTGGTGGCAGGGGAGGAGACAATGATTGT
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46097608 479 - 120421639 -------TGTCTGTGCATC----------------------------TTTAAT--ATTTTCTGTG-GTTTTA--GTGTTGTTCTCTG--------GTGAGAGAT--------------GGAGGTATGTTT--------------------TT-ACCTCAGGTGCGGGTCGATGAGTATGATTACTCCAAGCCCATCCAGGGACAGCAGAAGAAGCCGTTTGGGGAACACTGGAGGAAGCACACCCTCTCATATGTGGACATCAAGACTGGCAAGGTATGTGGG---------CATGCATCAGC----CCAG---------GGATGTGCTGAGCCACTCTATTTGGCTTT--TGATGGTTGACCAGTTTAGAAAGCAACCTAGTTTTAAACCAGTTGTTAACTGAACCAAGATATCACTGAAAAAAAG----TAACGTGAGTCATGCTTCTTGCTAGAAACAGAAACCAGTGCCTG--GGTGGTTCACGGGGACCCTTAG-TATAGGACTGGTTCTCATCTTCTGTACCAGGTGAAGAGCACTGGGCAATAATCAGATGTCTGATGCTTGTGG--TAGGGAGTTAGTGGTGACTAT
i mm10.chr13                   C 0 I 262
s canFam3.chr34                 30186842 542 -  42124431 GAGTGGGATCCAGGGGATTCACATCAGACTAGTCTCTCATGTATCATTTTAATGAGTTTGCCATG-TTTTCCAGTTATATTGCCCTATTAGAGAAATAAGAAATTTGAAGTGTATTTGTTGATGGTATTTTCTGAAATAAACTAATTTCCCTGGCCTCAGGTGCGGATTGACGAGTATGATTACTCTAAGCCCATCCAGGGACAGCAGAAGAAGCCGTTTGAGGAGCACTGGAGAAAGCACACCCTTTCCTACGTCGATATCAAGACTGGGAAGGTATGTGGGGAACGTGTCCTGCTCACGGATGCACTAATGACTGTGCCGTCCCAT--ATATTCTAGAGTACAACTT----ATGATGGGCTGG---GAGAAGCAACATGGATTTAAGTCC-CTGTTGGCAGACCTGAGACACTACTGAAAAGGACTCTT--------GTTGGGCTTCTC-TTGGAAACAGAATCCAGTGTGGATGGGTGGTTTA-GAAGTGCT-----GG------TCTT--CCA----------CAGTTGTAG--CACCTGGCAG-G---GAGTGCCCAAGGCTTGGTGGCAGGGGAGAGGATGATTCT---
i canFam3.chr34                I 1614 C 0

a score=610265.000000
s hg38.chr3_KI270935v1_alt         54671 201 +    197351 -GGACCTAGCGAGA--AAGTCAGCATCTGTGTGGTGGGG--ACAGAGCCACTACCAGAAACCAGTCCCGAGCCAAGGGAGCCCAGAAGAGACCCCTCCCCTCTCTTCCCATGGGCTGGGCCAACTGGAAGCATCTGCAGGGGAGCAGAGGGGATGTGGTGCAGCCCTTAGCATCCCCTGGGCACTGAGCAAGCAGAGAAGGGCAGA
s panTro4.chr3_GL389630_random     19127 201 +    103936 -GGACCTAGCGAGA--AAGTCAGCATCTGTTGGGTGGGG--ACAGAGCCACTACCAGAAACCAGTCCCGAGCCAAGGGAGCCCAGAAGAGACCCCTCCCCTCTCCTCCCATGGGCTGGGCCAACTGGAAGCATCTGCAAGGGAGCTGAGGGGATGTGGTGCAGCCCTTAGCATCCCCTGGGCACTGAGCAAGCAGAGAAGGGCAGA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199701157 201 + 202140232 -GGACCTGGCGAGA--AAGTCAGCATCTGTGGGGTGGGG--ACACAGCCACTACCAGAAACCAGTCCTAAGCCAAGGGAGCCCAGAAGAGACCCCTCCCCTCTCCTCCCATGGGCTGGGCCAACTGGAAGCATCTGCAGGGGAGCTGAGGGGATGTGGTACAGCCCTTAGCATCCCCTGGGCACTGAGCAAGTAGAGAAGGGCAGA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120799982 201 + 123690457 -GGACCTAGCGAGA--AAGTCAGCATCTGTAGGGTGGGG--ACACAGCCACTACCAGAAACCAGTCCCATGCCAAGAGAGCCCGGAAGAGACCCCTCCCCTCTCCTCCCATGGGCTGGGCCAACTGGAAGCGCCTGCAGGGGAGCTGAGGGGATGTGGTGCAGCCCTTAGCATCCCCTGGGCACTGAGCAAGCAGAGAAGGGCAGA
i nomLeu3.chr11                C 0 I 214
s rheMac3.chr6                     20270 203 + 180491593 -GGACTTAGGGAGA--AAGTCAGCGTCTGTGGGGTGGGGACACACAGCCACTACCAGAAACCAGTCCCAAGCCAAGGGAGCCCAGAAGAGACCCCTCCCCTCTCCTCCCTTGGGCTGGCCCAGCTGGAAGCATCTGCAGGGGAGCCGAGGGGATGTGGTGCAGCGCTTAGCATCCCCTGGGCACTGAGCAAGCAGAGAAGGGAAGG
i rheMac3.chr6                 C 0 I 5
s macFas5.chr6                 180295197 201 - 181584905 -GGACTTAGGGAGA--AAGTCAGCGTCTGTGGGGTGGGG--ACACAGCCACTACCAGAAACCAGTCCCAAGCCAAGGGAGCCCAGAAGAGACCCCTCCCCTCTCCTCCCTTGGGCTGGCCCAGCTGGAAGCATCTGCAGGGGAGCCGAGGGGATGTGGTGCAGCGCTTAGCATCCCCTGGGCACTGAGCAAGCAGAGAAGGGAAGG
i macFas5.chr6                 C 0 I 5
s papAnu2.chr6                 173179455 201 - 174439528 -GGACTTAGGGAGA--AAGTCAGCGTctgtggggtgggg--acacagccactaCCAGAAACCAGTCCCAAGCCAAGGGAGCCCAGAAGagacccctcccctctcctcccttggGCTGGCCCAACTGGAAGCATCTGCAGGGGAGCCGAGGGGATGTGGTACAGCCCTTAGCATCCCCTGGGCACTGAGCAAGCAGAGAAGGGAAGG
i papAnu2.chr6                 C 0 I 5
s chlSab2.chr4                  89626548 203 -  91010382 -GGACTTAGGGAGA--AAGTCAGCGTCTGTGGGGTGGGGACACACAGCCACTACCAGAAACCAGTCCCAAGCCAAGGGAGCCCAGAAGAGACCCCTCCCCTCTCCTCCCTTGAGCTGGCCCAACTGGAAGCATCTGCACGGGAGCCGAGGGGATGTGGTGCAGCCCTTAGCATCCCCTGGGCACTGAGCAAGCAGAGAAGGGAAGG
i chlSab2.chr4                 C 0 I 5
s calJac3.chr2                    163849 199 - 204313951 -AGACCTAGCAAG---AAGTCAAGGTCTG--GGGTGGGGACACTCAGCCACTACCAGAAACCTGTCCCAAGCCAAGGGAGCCCAGAAGAGACCACTCCCCTCTCTTCCCACAGGCTGGGCCACCTGGAAGCAGCAGCAGGGAAGCTGAGGGG-TGCGGTGCAGCCCTTAGCCTCCCTTGGGCACTGAGCAAGCAGAGAAGGGCAGA
i calJac3.chr2                 C 0 C 0
s canFam3.chr34                 30187384 136 -  42124431 GGAGCCCAATGAGAGCAGGTC-------GTGGGGTGGGG--GCAAGGT--------------------------GGGGGG----------------------------CATTGGCTGGACCATCTGGAGGCAGCCTCAGGGAACACG-GAGTATGCTGTGTAGCCCACAGCATGGGCCCAGCACAGAGCAAGCAGAGGAG------
i canFam3.chr34                C 0 C 0
e mm10.chr13                    46098087 262 - 120421639 I

a score=69982.000000
s hg38.chr3_KI270935v1_alt         54872 26 +    197351 AATGGAGGCAGGGTTGGGGTAAGCAG
s panTro4.chr3_GL389630_random     19328 26 +    103936 AATGGAGGCAGGGTTGGGGTAAGCAG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199701358 26 + 202140232 AATGGAGGCGGGGTTGGGGTGAGCAG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120800397 26 + 123690457 AATTGAGGAGGGGTTGGGGTAAGCAG
i nomLeu3.chr11                I 214 C 0
s rheMac3.chr6                     20478 26 + 180491593 AATTGAGGAGGGGTTGGGGTGAGCAG
i rheMac3.chr6                 I 5 I 15
s macFas5.chr6                 180295403 26 - 181584905 AATTGAGGAGGGGTTGGGGTAAGCAG
i macFas5.chr6                 I 5 I 18
s papAnu2.chr6                 173179661 26 - 174439528 AATTGAGGAGGGGTTGGGGTGAGCAG
i papAnu2.chr6                 I 5 C 0
s chlSab2.chr4                  89626756 25 -  91010382 AATTGAGGAGGGGTTGGGGTGAGCA-
i chlSab2.chr4                 I 5 C 0
s calJac3.chr2                    164048 26 - 204313951 AAGTGAGAAGCGGGTTGGGTGAGCAG
i calJac3.chr2                 C 0 C 0
s canFam3.chr34                 30187520 16 -  42124431 ----------GGGGTGCAGTGGGCAG
i canFam3.chr34                C 0 C 0
e mm10.chr13                    46098087 262 - 120421639 I

a score=46973.000000
s hg38.chr3_KI270935v1_alt         54898 53 +    197351 CGTCCTGGGAACAGCCAGCCGAGGG--TGTGGTAGGGGGGTTGCAGCTTGTTCCA
s panTro4.chr3_GL389630_random     19354 53 +    103936 CGTCCTGGGAACAGCCAGCCAAGGG--TGTGGTAGGGGGGTTGCAGCTTGTTCCA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199701384 45 + 202140232 CGTCCTGGGAACAGCCAGCTGAGGG--TGTGGTAGGGGGGTTGCAGC--------
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120800423 46 + 123690457 CATCCTGGGAACAGCCAGCCGAGGG--TGTGGTAGGGGGGTTGCAGCC-------
i nomLeu3.chr11                C 0 C 0
s macFas5.chr6                 180295447 53 - 181584905 TGTCCTGGGAACAGCCAGCCAAGGG--TGTGGTAGGGGGGTTGCAGCCTTGTTCC
i macFas5.chr6                 I 18 T 56
s papAnu2.chr6                 173179687 38 - 174439528 TGTCCTGGGAACAACCAGCCAAGGG--TGTGGTAGGGGGG---------------
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89626781 16 -  91010382 --------------------GAGGGTTTGTGGTGAG-------------------
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    164074 44 - 204313951 CGTCCTGGTAACAGCCAGCCGAGGG--TGTGCT-GGAGGCTTGCAGC--------
i calJac3.chr2                 C 0 C 0
s canFam3.chr34                 30187536  9 -  42124431 AGTCCTGGG----------------------------------------------
i canFam3.chr34                C 0 C 0
e rheMac3.chr6                     20504 15 + 180491593 I
e mm10.chr13                    46098087 262 - 120421639 I

a score=764.000000
s hg38.chr3_KI270935v1_alt         54951 8 +    197351 CACAAGCA
s panTro4.chr3_GL389630_random     19407 8 +    103936 CACAAGCA
i panTro4.chr3_GL389630_random C 0 C 0
e rheMac3.chr6                     20504 15 + 180491593 I
e mm10.chr13                    46098087 262 - 120421639 I
e canFam3.chr34                 30187545 0 -  42124431 C
e calJac3.chr2                    164118 0 - 204313951 C
e chlSab2.chr4                  89626797 0 -  91010382 C
e macFas5.chr6                 180295500 56 - 181584905 T
e papAnu2.chr6                 173179725 0 - 174439528 C
e ponAbe2.chr3                 199701429 0 + 202140232 C
e nomLeu3.chr11                120800469 0 + 123690457 C

a score=40986.000000
s hg38.chr3_KI270935v1_alt         54959 40 +    197351 CAGCGTCTTGGGAACAGCCAGCCGAGGGTGTGGTAGGGGG
s panTro4.chr3_GL389630_random     19415 40 +    103936 CAGCGTCTTGGGAACAGCCAGCCGAGGGTGTGGTAGGGGG
i panTro4.chr3_GL389630_random C 0 I 130
s rheMac3.chr6                     20519 40 + 180491593 CAGCGTCCTGGGAACAGCCAGCCAAGGGTGTGGTAGGGGG
i rheMac3.chr6                 I 15 I 1
s macFas5.chr6                 180295444 40 - 181584905 CAGTGTCCTGGGAACAGCCAGCCAAGGGTGTGGTAGGGGG
i macFas5.chr6                 T 56 I 1
s chlSab2.chr4                  89626797 40 -  91010382 CAGCGTCCTGGGAACAGCCAGCCAAGGGTGTGGTAGGGGG
i chlSab2.chr4                 C 0 I 1
s canFam3.chr34                 30187545 27 -  42124431 -------------ACAGCCAGCTTAGGTTGCAGTAGAGCC
i canFam3.chr34                C 0 C 0
e mm10.chr13                    46098087 262 - 120421639 I
e calJac3.chr2                    164118  0 - 204313951 C
e papAnu2.chr6                 173179725  0 - 174439528 C
e ponAbe2.chr3                 199701429  0 + 202140232 C
e nomLeu3.chr11                120800469  0 + 123690457 C

a score=9783.000000
s hg38.chr3_KI270935v1_alt         54999 6 +    197351 TTGCAG
s panTro4.chr3_GL389630_random     19585 6 +    103936 TTGCAG
i panTro4.chr3_GL389630_random I 130 C 0
s rheMac3.chr6                     20560 6 + 180491593 TTGCAG
i rheMac3.chr6                 I 1 I 1
s macFas5.chr6                 180295485 6 - 181584905 TTGCAG
i macFas5.chr6                 I 1 I 10
s papAnu2.chr6                 173179725 6 - 174439528 TTGCAG
i papAnu2.chr6                 C 0 I 1
s chlSab2.chr4                  89626838 6 -  91010382 CTGCAG
i chlSab2.chr4                 I 1 I 1
s canFam3.chr34                 30187572 6 -  42124431 TCACAG
i canFam3.chr34                C 0 I 1
e mm10.chr13                    46098087 262 - 120421639 I
e calJac3.chr2                    164118 0 - 204313951 C
e ponAbe2.chr3                 199701429 0 + 202140232 C
e nomLeu3.chr11                120800469 0 + 123690457 C

a score=27716.000000
s hg38.chr3_KI270935v1_alt         55005 9 +    197351 CTTGTTCCA
s panTro4.chr3_GL389630_random     19591 9 +    103936 CTTGTTCCA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199701429 9 + 202140232 CTTGTTCCA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120800469 8 + 123690457 -TTGTTCCA
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     20567 9 + 180491593 CTTGTTCCA
i rheMac3.chr6                 I 1 C 0
s papAnu2.chr6                 173179732 9 - 174439528 CTTGTTCCA
i papAnu2.chr6                 I 1 C 0
s chlSab2.chr4                  89626845 9 -  91010382 CTTGTTCCA
i chlSab2.chr4                 I 1 C 0
s calJac3.chr2                    164118 9 - 204313951 CCTGTTCCA
i calJac3.chr2                 C 0 C 0
s canFam3.chr34                 30187579 9 -  42124431 CTTATTCCA
i canFam3.chr34                I 1 C 0
e mm10.chr13                    46098087 262 - 120421639 I
e macFas5.chr6                 180295491 10 - 181584905 I

a score=96708.000000
s hg38.chr3_KI270935v1_alt         55014 28 +    197351 CACAAGCACAGTTCACCTGTGTGGCATT
s panTro4.chr3_GL389630_random     19600 28 +    103936 CACAAGCACAGTTCACCCGTGTGGCATT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199701438 28 + 202140232 CACAAGCACAGTTCACCCGTGTGGCATT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120800477 28 + 123690457 CACAAGCACAGTTCACCCGTGTGGCATT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     20576 28 + 180491593 CACAAGCACAGTTCACCTGTGTGGCATT
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180295501 28 - 181584905 CACAAGCACAGTTCACCTGTGTGGCATT
i macFas5.chr6                 I 10 C 0
s papAnu2.chr6                 173179741 28 - 174439528 CACAAGCACAGTTCACCTGTGTGGCAtt
i papAnu2.chr6                 C 0 M 50
s chlSab2.chr4                  89626854 28 -  91010382 CACAAGCACAGTTCACCTGTGTGGCATT
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    164127 27 - 204313951 CGCAAGCGCAGTTCACC-ATGTGGCATT
i calJac3.chr2                 C 0 C 0
s canFam3.chr34                 30187588 28 -  42124431 CCAAAGCATAACTCATCCATTTGCCATT
i canFam3.chr34                C 0 C 0
e mm10.chr13                    46098087 262 - 120421639 I

a score=225944.000000
s hg38.chr3_KI270935v1_alt         55042 85 +    197351 TCCACTGGGCATTGAGATTCAGAAATCATGAAGATAGAAAGCTTTTACCCTTAAGCTTTTCATAACTTGTAAGGGAGAGTCGTAT
s panTro4.chr3_GL389630_random     19628 85 +    103936 TCTGCTGGGCATTGAGATTCAGAAATCATGAAGATAGAAAGCTTTTACCCTTAAGCTTTTCATAACTTGTAAGGGAGAGTCGTAT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199701466 85 + 202140232 TCCGCTGGGCATTAAGATTCAGAAATAATGAAGATAGAAAGCTTTTACCCTTAAGCTTTTCTTAGCTTGTAAGAGAGAGTCGTAT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120800505 85 + 123690457 TCCGCTGGGCATTGAGATTCAAAAATAATGAAGACAGAAAGCTTTTACCCTTAAGCTTTTCGTAGCTTGTAAGAGATAGTCGTAT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     20604 85 + 180491593 TCCGCTGGGCATTAAGATTCAGAAATAATGAAGATAGAAAGCTTTTACCCTTAAGCTTTTCGTAGCTTGTAAGAGATAGTCGTAT
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180295529 85 - 181584905 TCCGCTGGGCATTAAGATTCAGAAATAATGAAGATAGAAAGCTTTTACCCTTAAGCTTTTCGTAGCTTGTAAGAGATAGTCGTAT
i macFas5.chr6                 C 0 C 0
s chlSab2.chr4                  89626882 85 -  91010382 TCCGCTGGGCATTAAGATTCAGAAATAATGAAGATAGAAAGCTTTTACCCTTAAGCTTTTCGTAGCTTGTAAGAGATAGTCGTAT
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    164154 85 - 204313951 CCCACTGGGCATTAAGATTCAGAAATAATGAAGATGGAAAGCTTTTACCCTTAAGCTTTTCATAGCTTGTAAGAGATAGTTGTAT
i calJac3.chr2                 C 0 C 0
s canFam3.chr34                 30187616 75 -  42124431 TCTGCTGGACATTAAGAATCAGAACT----AAGATATAAAGTGTT---ACTTGAGCTTTTCAGA-CTTGTAAGGGAGAGTCTT--
i canFam3.chr34                C 0 C 0
e mm10.chr13                    46098087 262 - 120421639 I
e papAnu2.chr6                 173179769 50 - 174439528 M

a score=536400.000000
s hg38.chr3_KI270935v1_alt         55127 174 +    197351 AATCACTTAGCTGTGTCTGTGGAAGTTAC---CTTTG-GACTCTCACT--------ATCATCTAGTGTGTCTGTGA-TTCAGGCAGTGGGTCATTTTCAGAATTTATCATGAAGGCCATTTCCTGATAGTATAG----AGAGGTCACACTTCACTCGCTTAGCACAAGTCTATTTT---TAATGTTTCCGGGTT
s panTro4.chr3_GL389630_random     19713 174 +    103936 AATCACTTAGCTGTGTCTGTGGAAGTTAC---CTTTG-GACTCTCACT--------ATCATCTAGTGTGTCTGTGA-TTCAGGCAGTGGGTCATTTTCAGGATTTATCATGAAGGCCATTTCCTGATAGTATAG----AGAGGTCACACTTCACTCGCTTAGCACAAGTCTATTTT---TAATGTTTCCGGGTT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199701551 174 + 202140232 AATCACTTAGCTGTGTCTGTGGAAGTTAC---CTTTG-GACTCTCACT--------ATCATCTAGTTTGTCTGTGA-TTCAGGCAGTAGGTCATTTTCAGGATTTATCATGAAGACCATTTCCTGGTAGTGTAT----AGAAATCACACTTCACTCGCTTAGCACAAGTCTATTTT---TAATGTTTCCAGGTT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120800590 174 + 123690457 AATCATTTAGCCATGTTTGTGGAAGTTAC---CTTTG-GACTCTCACT--------ATCATCTAGTGTGTCTGTTA-TTCAGGCAGTAGGTCATTTTCAGGATTTATCATGAAGGCCATTTCTTGATACTGTAT----AGAAATCACACTTCACTCGCTTAGCACAAGTCTATTTT---TAATGTTTCCAGGTT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     20689 174 + 180491593 AATCACTTATCTGTGTCTGTGGAAGTTAC---CTGTG-GACTCTCACT--------ATCATCTAGTGTGTCTGTAA-CTCAGGCAGTAGGTCATTTTCAGAATTTATCATGAAGGCCATTTCCTGATCGTATAT----AGAAATTACACCTCACTCGCTTAGCACAAGTCTATTTT---TAATGTTTCCGGGTT
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180295614 174 - 181584905 AATCACTTATCTGTGTCTGTGGAAGTTAC---CTGTG-GACTCTCACT--------ATCATCTAGTGTGTCTGTAA-TTCAGGCAGTAGGTCATTTTCAGAATTTATCATGAAGGCCATTTCCTGATCGTATAT----AGAAATCACACCTCACTCGCTTAGCACAAGTCTATTTT---TAATGTTTCCGGGTT
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173179819 173 - 174439528 AATCACTTATCTGTGTCTGTGGAAGTTAC---CTGTG-GACTCTCACT--------ATCATCTAGTGTGTCTGTAA-TTCAGGCAGTAGGTCATTTTCAGAATTTATCATGAAGGCCATTTCCTGATCGTATAT----AGAAATCACA-CTCACTCGCTTAGCACaagtctatttt---taatgtttccgggtt
i papAnu2.chr6                 M 50 C 0
s chlSab2.chr4                  89626967 171 -  91010382 AATCACTTATCTGTGTCTGTGGAAGTTAC---CTTTG-GACTCTCACT--------ATCATCTAGTGTGTCTGT----TCAGGCAGTAGGTCATTTTCAGAATTTGTCATGAAGGCCATTTCCTGATCGTATAT----AGAAATCACACCTCACTCGCCTAGCACAAGTCTGTTTT---TAATGTTTCCGGGTT
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    164239 172 - 204313951 AATCATTTACATGCGTC--TGGCTGTTTC---GTTTG-GGCTCTCACT--------GTCATTTAGTATGCCTGTAA-TTCAGGCAATCGGTCATTTTCAGGATTTATCATGAAGGCCATTTTCTGATAGTATAT----AAAAATCACACTTCACTTGCTTAGCGAAAGTCTGTTTT---TAACGTTTTGGGGTT
i calJac3.chr2                 C 0 C 0
s canFam3.chr34                 30187691 191 -  42124431 AATCATTTATGTGAGTCTACAGAAATAACGTGCTTTGCTGCCATCACTTAATACAGAGAGCCTAGTGTGTCTGTTATTTCAAGTAGGCAGTAACTTTCATAATTTTGCGTGAAGGCTATTTTCTGACAGTGTATAGAAAGAAATGAGACTT---TCTCTCGGTACAGCCCTGTTTTTAGTAATGTTCAAGGGTT
i canFam3.chr34                C 0 I 149
e mm10.chr13                    46098087 262 - 120421639 I

a score=28686.000000
s hg38.chr3_KI270935v1_alt         55301 15 +    197351 CAGG-ttttttgttt-t
s panTro4.chr3_GL389630_random     19887 15 +    103936 CAGG-ttttttgttt-t
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199701725 15 + 202140232 CGGG-ttttttgttt-t
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120800764 15 + 123690457 TGGG-ttttttgttt-t
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     20863 15 + 180491593 CGGG-TTTTTTGTTTT-
i rheMac3.chr6                 C 0 I 53
s macFas5.chr6                 180295788 14 - 181584905 CGGG-ttttttgttt--
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173179992 14 - 174439528 tggg-ttttttgttt--
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89627138 14 -  91010382 CGGG-ttttttgttt--
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    164411 16 - 204313951 TGGGtttttttgttt-t
i calJac3.chr2                 C 0 C 0
e mm10.chr13                    46098087 262 - 120421639 I
e canFam3.chr34                 30187882 149 -  42124431 I

a score=456887.000000
s hg38.chr3_KI270935v1_alt         55316 218 +    197351 gtttttgttgttctgagatagagtctcatctcttttgcccaggctgaaatgtggtggctcgatctcatctcactgcagcctcaacctcccctcggctcaggtgatcctcccacctcagcctcccgggca--------catgccaccatgcctggctaatttttgtatgttttgtagagacggggttttgccacgttgcccaggctagtcttgagctcctgagctca
s panTro4.chr3_GL389630_random     19902 218 +    103936 gtttttgttgttctgagatagagtctcacctcttttgcccaggctgaaatgtggtggctcgatctcgtctcactgcaccctcaacctccccccggctcaggtgatcctcccacctcagcctcccgggca--------catgccaccatgcctggctaatttttgtatgttttgtagagacggggttttgccacattgcccaggctagtcttgagctcctgagctca
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199701740 226 + 202140232 gtttttgtttttctgagatagagtcttatctctgttgcccaggctgaaatgtggtggctcgatctcgtctcactgcagcctcaacctccccccggctcaggtgatcctcccacctcagcctcccgggcacatgccaccatgccaccatgcctggctaatttttgtatgtttcgtagagatggggttttgccacgttgcccaggctagtcttgaactgctgagctca
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120800779 218 + 123690457 gtttttgtttttctgagatagagtctcatctctgttgcccaggctgaaatgtggtggctcgatctcgtctcactgcagcctcaacctcccgccggctcaggtgatcctcccacctcagcctcccaggca--------catgccaccatgcctggctaatttttgtatgttttgtagagacggggttttgccacgttgcccaggctggtcttgagctcctgagctca
i nomLeu3.chr11                C 0 C 0
s macFas5.chr6                 180295802 198 - 181584905 ----------ttctgagac--agtctcatctctgttgcccaggctgaaatgtggtgggtcgatcttgtctcactgcagcctcaacctccccctggctcaggtgatcctcccacctcagcctcccaggca--------cacaccaccatgcctggctaatttttgtatgttttgtagagacggggttttgccacattgcctaggctagtcttgaactct--------
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173180006 197 - 174439528 ----------ttctgagac--agtctcatctctgttgcccaggctgaaatgtggTGGcttgatcttgtctcactgcagcctcaacctccccctggctcaggtgatcctcccacctcagcctcccaggca--------catgccaccatgcctggctaatttttgtatgttttgtagagacgggg-ttcgccacgttgcctaggctggtcttgaactca--------
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89627152 198 -  91010382 ----------ttctgagac--agtctcatccctgttgcccaggctgaaatgtggtggctcgatcttgtctcactgtagcctcaacctccccctggctcaggtgatcctcccacctcagcctcccaggca--------cacgccaccatgcctggctaatttttgtatgttttgtagagatggggtttcgccacgttgcctaggctagtcttgaactca--------
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    164427 214 - 204313951 ---gttttatttctgagatagagtctca-ctctgttgcccaggctggaatgcagtggcttggtctcatctcactgcagcctcaacctcccccaggctcaagtgatcctcctgcctcagcctcccaggca--------cgtgccaccatgcctggctaatttttgtatgttttgtagagacacggtttcaccatgttgcccagactagttttgaactcctgagctca
i calJac3.chr2                 C 0 C 0
e rheMac3.chr6                     20878  53 + 180491593 I
e mm10.chr13                    46098087 262 - 120421639 I
e canFam3.chr34                 30187882 149 -  42124431 I

a score=1207911.000000
s hg38.chr3_KI270935v1_alt         55534 417 +    197351 agtgatccacctgtcttggcctccccaacaggcatgaaccaacacgcccagccAGtttcagtgatttttgaagaaatacatactcattttagaaagtacaaagagattgaaataagagctcactaac----cagagatgacccattatggtttaaatttctttgtatatgtgcctaccttttcctgtgtgtgcatatttaatacacggcttgagtattccttctctgaaatccttgggaccagaagtgttttggatttcaggcttgttcagactttgga--atatttgcattacacttactgtctgagcatccttaatcggaagatctgactccatagcacatttcttttgaatgtcatgctggtgctc-agaaagtttcagatttgggagaatttcagatgtttggattagggatgttctacc
s panTro4.chr3_GL389630_random     20120 418 +    103936 agtgatccacctgtcttggcctccccaacaggcatgaaccaacacgcccagccAGtttcagtgatttttcaagaaatacatactcattttagaaagtacaaagagattgaaataagagctcactaac----cagagatgacccattatggtttaaatttctttctatatgtgcctaccttttcctgtgtgtgcatatttaatacatggcttgagtattccttctctgaaatccttgggaccagaagtgttttggatttcaggcttgttcagactttgga--atatttgcattacacttactgtctgagcatccctaatcggaagatctgactccatagcacatttcttttgaatgtcatgctggtgctctagaaagtttcagatttgggagaatttcagatgtttggattagggatgttctacc
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199701966 417 + 202140232 agtgatccacgtgtcttggcctccccaacaggcatgaaccaacacgcccagccAGTTTCAGTGATTTTTCAAGAAATACATACTCATTTTagaaagtacaaagagattgaaataagagctcactaac----cagagatgacccattatggtttaaatttctttgtgtatgggcctgccttttcctgtgtgtgcatatttaatatacagcttgagtattccttctctgaaacccttgggaccagaagtgttttggatttcaggcttgttcagactttgga--atgtttgcattatacttactgtctgagcatccctaatcggaagatctgactccctagcacatttgttttgaatgtcatgctggtgctc-agaaaatttcatatttgggagaatttcagatgtttggattagggatgttcaacc
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120800997 417 + 123690457 agtgatccacctgttttggcctccccaacaggcatgaacaaacacgcccagccAGtttcagtgatttttcaagaaatacatactcattttagaaagtacaaagagattgaaataagagctcactaac----ttgagatgacccattatggtttaaatttctttgtatctgcgcctaccttttcctgtgtgtgcatatttaatacatggcttgagtattccttctctgaaatccttgggaccagaagcgttctggatttcgggcttgttcagactttgga--atatttgcattatacttactgtctgagcatccctaatgggaagatctgactccatagcacatttcttttgaatggcatgttggtgctc-agaaagtttcagatttgggagaatttcagatgtttggattagggatgttcaacc
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     20931 415 + 180491593 AGTGATCCACCTGTCTTGACCTCCCCAACAGGCATGAACCAACACGCTCAGCCAGTTTTAGTGATTTTTCAAGAAATACATACTCATTTcagaaagtacaaagagattgaaataagagctcac-aac----cagagatgacccattatggtttaaatttctttgtatatgtgcctaccttttcctgtgtgtgcatatttaatacacaacttgagtattccttctctgaaatccttgggaccagaagtgtttcggatttcaggcttgttcagactttgga--atatctgcatgatacttactgtctgagcat-cccaatcagaagatctgactccatagcacatttcttttgaatgtcatgttggtgctc-agaaagcttcagattttggagaatttcagatttttgcattagggatgttcaacc
i rheMac3.chr6                 I 53 C 0
s macFas5.chr6                 180296000 407 - 181584905 agtgatccacctgtcttgacctccccaacaggcatgaaccaacacactcagccAGTTTTAGTGATTTTTCAAGAAACACATACTTATTTCAGAAAGTACAAAGAGATTGAAATAAGAGCTCAC-AAC----CAGAGACGACCCATTATGGTTTAAATTTCTTTGTGTATGTGCCTACCTTTTCCTGTGTGTGCATTTTTAATATACA--------attccttctctgaaatccttgggaccagaagtgtttcggatttcaggcttgttcagactttgga--atatctgcatgatacttactgtctgagcat-cccaatcagaagatctgactccatagcacatttcttttgaatgtcatgttggtgctc-agaaagcttcagattttggagaatttcagatttttgcattagggatgttcaacc
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173180203 416 - 174439528 agtgatccacctgtcttgacctccccaacaggcatgaaccaacacGCTCAGCCAGTTTTAGTGATTTTTCAAGAAATACATACTCATTTCAGAAAgtacaaagagattgaaataagaGCTCACTAAC----CAAAGATGACCCATTATGGtttaaatttctttgtatatGTGCCTACCTTTTCCTGTGTGTGCATATTTAATACACAACTTGAGTATTCCTTCTCTGAAAtccttgggaccagaagtgtttcggaTTTCAGGCTTGTTCAGACTTTGGA--ATATCTGCATGATACTTACTGTCTGAGTGT-CCCAGTCGGAAGATCTGACTCCGTAGCACATTTCTTTTGAATGTCATGTTGGTGCTC-AGAAAGCTTCAGATTTTGGAGAATTTCAGATTTTTGTATTAGGGATGTTCAACc
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89627350 411 -  91010382 agtgatccacctgtcttgacctccccaacaggcatgaaccaacacgctcagccAGTTTTAGTGATTTTTCAAGAAATACATACTCATTTCAGAAAGTACAAAGAGATTGAAATAAGAGCTCACTAAC----CAGAGACGACCCATTATGGTTTAAATTTCTTTGTGTGTGTGCCTACCTTTTCCTGTGTGTGCATTTTTAATATACA--------attccttctctgaaatccttgggaccagaagtgtttcggatttcaggcttgttcagactttggaatatatctgcatgatacttactgtctgagtgtccccagtcggaagatctgactccatagcacatttcttttgaatgtcatgttggtgctc-agaaagcttcagattttggagaatttcagatttttggattagggatgttcaacc
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    164641 415 - 204313951 --tgatccacctgccttggcctccccaaCAGGCATGAACCAACATGGCTGGCTAGTTTTGGTGATTTTTCAAGAAATACATACTCATTTTAGAAAGTACAAAGAGACTGAAATAAGAGCTCAGTAACAGAGAGGAGAGGGCCCATTATGGTTTTGAG---TGTGTGTGTGTGTCTACCATTGACTCTGTGTGCATATTTAGTACAcagcttgagtgttcc-tatctgaaatccttggggccagcagtgttttggatttccggcttgttcagactttgga--atatttgcattacacttactgtctgatcatccctaattggaagatctgactccatggtgcatttcttttgaatgtcatattggtgctc-agaaagtttcaagttttggagaatttcagatttttggattagggatgttcaacc
i calJac3.chr2                 C 0 C 0
e mm10.chr13                    46098087 262 - 120421639 I
e canFam3.chr34                 30187882 149 -  42124431 I

a score=583326.000000
s hg38.chr3_KI270935v1_alt         55951 217 +    197351 tatataaatatttactttgaagtagaaaaact----ggaagtagatagtttaaaca----tgaagtgtcttggtatagacaagggttctcccacttttcatgatgggagcatttttgtaaagcaaagcactgagaatctggtacagtgtcattttcgttgctctgttccactctaccgatctgccgtcatttaca------gtcccc-tgttgcgcatg--tagatcatttttg
s panTro4.chr3_GL389630_random     20538 213 +    103936 tatataaatatttactttgaagtagaaaaact----ggaagtagatagtttaaaca----tgaagtgtcttggtatagacaagggttctcccacttttcatgatgggagcatttttgtaaagca-----ctgagaatctggtacagtgtcattttcattgctctgttccactctacagatctgccgtcacttaca------gtccccctgttgcgcatg--tagatcatttttg
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199702383 212 + 202140232 tgtataaatacttactttgaagtagaaaaact----ggaagtagatggtttaaaca----tcaagtgtgttggtatagacaagtgttctcccacttttcgtgatgggagtgtttttgtaaagca-----ctgagaatctggtacagtgtcattttcattgttccgttccactctacggatctgccgtcatttaca------gtcccc-tgttgcgcatg--tagatcatttctg
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120801414 211 + 123690457 tatataaatatttactttgaagtggaagaact----ggaagtagatagtttaaaca----tgaagtgtcttggtatagacaagggttctcccactctacatgacgggagcatttttgtaaagca-----ctgagaatctggtacagtgtcattttcgttgctctgttcca-tctgtggatctgccatcattgaca------ctcccc-tgttgcgcatg--tagatcatttttg
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     21346 197 + 180491593 tatgtaaatatttactttg---------aact----ggaagtaggtagtt-----a----taaagtgtcttggtatagacaagggttctcccacttttcatgacgggagcatttttgtaaagca-----ctgagaatctggcacagggtca-tttcgtcgctctgttccactctagggatctgccgccatttaca------gtcccc-tgttgcgcatg--tagatcatttttg
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180296407 202 - 181584905 tATGTAAATATTTACTTTG---------AACT----GGAAGTAGGTAGTTTAAACA----TACAGTGTCTCGGTATAGACAAGGGTTCTCCCACTTTTCATGACGGGAGCATTTTTGTAAAGCA-----CTGAGAATCTGGCACAGGGTCA-TTTCGTCGCTCTGTTCCACTCTAGGGATCTGCCGCCATTTACA------GTCCCC-TGTTGCGCATG--TGGAACATTGTTG
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173180619 202 - 174439528 tatgtaaatatttactttg---------AACT----GGAAGTAGGTAGTTTAAATA----TAAAGTGTCTTGGTATAGACAAGGGTTCTCCCACTTTTCATGACCGAAGCATTTTTGTAAAGCA-----CTGAGAATCTGGCACAGGGTCA-TTTCGTCGCTCTGTTCCACTCTACGAATCTGCCGCCATTTACA------GTCCCC-TGTTGCGCATG--TGGAACATTGTTG
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89627761 201 -  91010382 tATGTAAATATTTACTTTG---------AACT----GGAAGTAGGTAGTTTAAACA----TACAGTGTCTCGGTATAGACAAGGGTTCTCCCACTTTTCATGACCG-AGCATTTTTGTAAAGCA-----CTGAGAATCTGGCACAGGGTCA-TTTCGTCGCTCTGTTCCACTCTACGGATCTGCCGCCATTTACA------GTCCCC-TGTTGCGCATG--TAGATCATTTTTG
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    165056 216 - 204313951 tATATAAATATTTACTTTGAAGTAGAAAAACT----GGAAGTAGATAGCTTGAACA----TAAAGTGTTTTGGTATATACGAGGGTTCTCCCACTTTTCATGATGGGAGCATTTTTGTACAGCA-----CTGAGACTCTTGCACAGTGTCATTTTCGGGGCTGTGTTCCACCCTGCAGACTTGTCCTTATTGACA----CGGTCCCC-CGTCGTGCATGACAGTGTCATTTTCG
i calJac3.chr2                 C 0 I 720
s canFam3.chr34                 30188031 207 -  42124431 tatataaatac--------aaatagaaaaacttttggtaaatacagggtttaagcataattaaagaatgataatatatgcaaggttt----cacttctt-------gagcatttgtgtaaagca-----tcaagaattttatacattgttattttagttgctgtatttcattacatggagttaccataatttacatacctggtcccc-tattgtacgtt--taggtcatttttg
i canFam3.chr34                I 149 C 0
e mm10.chr13                    46098087 262 - 120421639 I

a score=73636.000000
s hg38.chr3_KI270935v1_alt         56168 29 +    197351 aatttgttattggaaaatactgcagcaaa---
s panTro4.chr3_GL389630_random     20751 29 +    103936 aatttgttattggaaaatactgcagcaaa---
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199702595 29 + 202140232 aatttgttactggaaaatactgcggcaaa---
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120801625 29 + 123690457 aatttgttactggaaaatactgcagcaaa---
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     21543 29 + 180491593 aatttgttattggaaaagactgcggcaaa---
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180296609 29 - 181584905 AATTTGTTATCGGAAAAGACTGCGGCAAA---
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173180821 29 - 174439528 AATTTGTTATCGGAAAAGACTGCGGCAAA---
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89627962 29 -  91010382 AATTTGTTATTGGAAAAGACTGCGGCAAA---
i chlSab2.chr4                 C 0 C 0
s canFam3.chr34                 30188238 31 -  42124431 agtttgttactgaaaaatactcca-caatgag
i canFam3.chr34                C 0 C 0
e mm10.chr13                    46098087 262 - 120421639 I
e calJac3.chr2                    165272 720 - 204313951 I

a score=78676.000000
s hg38.chr3_KI270935v1_alt         56197 31 +    197351 ------taccttAAAGTTCACA-----TGCC-GTAAATCTACT
s panTro4.chr3_GL389630_random     20780 31 +    103936 ------taccttAAAGTTCACA-----TGCC-GTAAATCTACT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199702624 31 + 202140232 ------taccttAAAGTTCACA-----TGCC-GTAAATCTACT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120801654 31 + 123690457 ------taccttAAAGTTCACA-----TGCC-GTAAATCTACT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     21572 31 + 180491593 ------tacttttaagttccca-----tgcc-attaatctact
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180296638 31 - 181584905 ------TACCTTTAAGTTCCCA-----GGCC-GTAAATCTACT
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173180850 31 - 174439528 ------TGCCTTTAAGTTCCCA-----GGCC-GTAAATCTACT
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89627991 31 -  91010382 ------TACCTTTAAGTTCCCA-----GGCC-ATAAATCTACT
i chlSab2.chr4                 C 0 C 0
s mm10.chr13                    46098349 32 - 120421639 ------TGTCTTAAAGTTCTCA-----TGCCTGTAAATGTACT
i mm10.chr13                   I 262 C 0
s canFam3.chr34                 30188269 42 -  42124431 tatttgtGATTTTAAGTTCCTGAAATTTGTC-TACAAATAACT
i canFam3.chr34                C 0 C 0
e calJac3.chr2                    165272 720 - 204313951 I

a score=1911.000000
s hg38.chr3_KI270935v1_alt         56228 1 +    197351 T
s panTro4.chr3_GL389630_random     20811 1 +    103936 T
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199702655 1 + 202140232 T
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120801685 1 + 123690457 T
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     21603 1 + 180491593 t
i rheMac3.chr6                 C 0 C 0
s mm10.chr13                    46098381 1 - 120421639 T
i mm10.chr13                   C 0 C 0
s canFam3.chr34                 30188311 1 -  42124431 T
i canFam3.chr34                C 0 C 0
e calJac3.chr2                    165272 720 - 204313951 I
e chlSab2.chr4                  89628022 0 -  91010382 C
e macFas5.chr6                 180296669 0 - 181584905 C
e papAnu2.chr6                 173180881 0 - 174439528 C

a score=859479.000000
s hg38.chr3_KI270935v1_alt         56229 531 +    197351 TTATAGTTAAAATTTTTCAAAAGGAACACAAGAGATGGCTTTTTGTACATTTTTGTGC-----TTAACTTACCACTGA--CTTCTTTTCAAGGTCACTGTGGAATATAGACCCATAATTGACAAAACTTTGAACGAGGCTGACTGTGCCACTGTCCCCCCAGCCATTCACTCCTACTGATGAGACAAGATGTGGTGATGACAGAATCAGCTTTTGTAATTATGTATAATAGCTCATGCATGTGTCAATGTCATAACTGTCTTTATACGCTTCTGCACTCTGGGGAAGAAGGAGTA-CATTGAAG-GGGGATTGGC-ACCCAGTGGCCG----------------------------GGGA--GCG----TGGCACTTACCTTTGTCCCTTGCTTCATTCTTGTGACAAGATAAAACTGGGCACAGCTGTTAAATAAAATATAAATGAACAAACTTTCTTTTATTTCCAAATCCATTTAAAATATTTTCCTGTTATGACTT--GTCATATTTGTTGACCTAAAA-ATCAAATGTAATTATCTTTGTATTCTGTTACATCAAAATCCAGATATTTTGTTG
s panTro4.chr3_GL389630_random     20812 531 +    103936 TTATAGTTAAAATTTTTTAAAAGGAACACAAGAGATGGCTTTTTGTACATTTTTGTGC-----TTAACTTACCACTGA--CTTCTTTTCAAGGTCACTCTGGAATATAGACCCATAATCGACAAAACTTTGAACGAGGCTGACTGTGCCACCGTCCCCCCAGCCATTCGCTCCTACTGATGAGACAAGATGCGGTGATGACAGAATCAGCTTTTGTAATTACGTATAATAGCTCATACATGTGTCCATGTCATAACTGTCTTTATACGCTTCTGCACTCTGGGGAAGAAGGAGTA-CATTGAAG-GGGGATTGGC-ACCCAGTGGCCG----------------------------GGGA--GCG----TGACACTTACCTTTGTCCCTTGCTTCATTCTTGTGACAAGATAAAACTGGGCACAGCTCTTAAATAAAATATAAATGAACAAACTTTCTTTTATTTCCAAATCCATGTCAAATATTTTACTGTTATGACGT--GTCATATTTGTTGACCTAAAA-ATCAAATGTAATTATCTTTGTATTCTGTTACATCAAAATCCAGATATTTTGTTG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199702656 559 + 202140232 TTATAGTAAAAAATTTTCAAAAGGAACACAAGAGATGGCTTTTTGTACATTTTTGTGC-----TTACCTTACCCCTGACTCTTCTTTTCAAGGTCACCCTGGAATATAGACCCGTAATTGACAAAACTTTGAATGAGGCTGACTGTGCCGCCATCCCCCCAGCCATTCACTCCTGCTGATGAGACAAGATGCGGTGATGACAGAATCAGCTTTTGTAATTATGTATAATAACTCATGTATGTGTCCATGTCATAAGTGTCTTCATACGCTTCTGCACTCCAGGGAAGAAGGAGTA-CATTGAGG-GGAGATTGGC-ACCCAGTGGCCGGGAG--CTTGCCAGGAACCCAGTGGCCAGGGA--GCG----TGGCACTTACCTTTGTCCCTTGCTTCATTCTTGTGACATGATAAAACTGGGCACAGCTCTTAAATAAAATATAAATGAACAAACTTTCTTTTATTTCCAAATCCATTTACAATATTTTACTGTTGTGACTT--GTCATATTTGTTGACCTAAAA-ATCAAATGTAATTGTCTTTGTATTCTGTCACATCAAAATCCAGATATTTTGTTG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120801686 561 + 123690457 TTATAGTTAAAATTTTTCAAAAGGAACACAAGAGATGGCTTTTTGTACATTTTTGTGC-----TTAACTTACCACTGACTCTTCTTTTCAAGGTCACTCTGGAATATAGACCCATAATTGACAAAACTTTGAACGAGGCTGACTGTGCCACCGTCCCCCCAGCCATTCGCTCCTACTGATGAGACAAGATGCGGTGATGACAGAATCAGCTTTTGTAATTATGTGTAATAGTTCATGCATGTGTCCATGTCATAACTGTCTTTATACGCTTCTGCACTCCAGGGAAGAAGGAGTA-CATTGAAG-GGAGATTGGC-ACCCAGTGTCCGGGAG--CTTGCCAGGAACCCAGTGGCTAGGGA--GCG----TGGCACTTACCTTTGTCCCTTGCTTCATTCTTGTGACACGATAAAACTGGGCACAGCTCTTAAATAAAATATAAATGAACAAACTTTCTTTTATTTCCAAATCCATTTAAAATATTTTACTGTTGTGACTTTAGTCATATTTGTTGACCTAAAT-ATCAAATGTAATTATCTTTGTATTCTGTCACATCAAAATCCAGATATTTTGTTA
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     21604 556 + 180491593 ttatagtttaaatttttcaaaaggaatacatgagatggctttttgtacatttttaTG----------CTTACCACTGATTCTTCTTTTCAAGGTCACTCTGGAATATAGACCCGTAATCGACAAAACTTTGAACGAGGCTGACTGTGCCACCGTCCCCCCAGCCATTCGCTCCTACTGATGAGACAAGATGCAGTGATAACAGAATCAGCTTTTGTAATTATGTATAATAGCTCATGCATGTGTCCATGTCATAACTGCCTTTATACGCTTCTGCACTCCGGGGAAAAAGGAGTA-CATTGAAG-GGAGATTGGC-ACCCAGTGGCTGGTAG--CTTGCCAGGAACCCAGTGGCCAGGGA--ACG----TGGCACTTACCTTTGTCCCTTGCTTCATTCTTGTGAGATGATAAAACTGGGCACAGCTCTTAAATAAAATACAAATGAACAAACTTTCTTTTATTTCCAAATCCATTTAAAATATTTTACTATTATGACTTTAGTCATATTTGTTGACCTAAAA-ATCAAATGTAATAATCTTTGTATTCTGTTACATCAAAATCCAGATATTTTGTTG
i rheMac3.chr6                 C 0 C 0
s calJac3.chr2                    165992 547 - 204313951 TTATAGTTAAAAATTTTCAAAAGGAACACAAGAGATGGCTATTTGTACATTTTTGTGC-----TTAACTTACCGCTGACCCTTCTTTTCAAGGTCACTTTGGAATATAGACCTGTAATCGACAAAACTTTGAACGAGGCTGACTGCACCTCCGTTCCCCCGGCCATTCGCTCCTACTGATGAGACAAGATGCGGTGATGACAGAAGCAGCCTTTGTAATTATGTATCATAGCTCATGCATGTGTTCATGTCGTAACTGTCTTTATAAGCTTCTGCACTGGGGTGAAGAGGGAGTC-CATTGAAG-GGAGATGGGC-ACCCAGTGGCCGGGAG--CCGGCCA---------------GGGA--CCG----CAGCACTTACCTTTGTCCCTCCCTTCATTCTTGTGAGACCATAAAACTGGACACAGCCCTAAAATAAAACATAGATGAACAAACTTTCTTTTATTTCCACATCCACTTAAAATATTTTACCGTCATGACTTTAGTCATATTTGTTGACCTAAAATATCAAATGGAATTATCTTTGCATTCTGTTACATCAAAATCCAGAGATTTTGTTG
i calJac3.chr2                 I 720 C 0
s mm10.chr13                    46098382 520 - 120421639 -GATGGCCTAA--TTTTACAGAAGCACAGAAGAAATGGCTGTTTGTAAATATTCATGC-----CTTGATTCACCCCGACTCTTTTCTCCAAGGTTACTTTGGAGTACAGACCTGTTATCGACAAGACCTTGAATGAGGCTGACTGTGCCACCGTACCTCCTGCTATCCGCTCCTACTGATGAAACCTGA-----CAGCTACAGGACCAGCTTATGTGATTATATAGCATAGCTTACCTGCGTTTCCCC-TCATACTTGTCTTGGTAAAATTCTGCTCTC--ATGAACAAGGAGTC-ACTTCA----TAGATTGTG-ATCAACAGCTTGGTAGTACTTGCTGTAA------------GGGATTGAG----TTGCGCCAGACTTTGTCT----CTTTATTCTTGTGCAGTGATAAAACTGG-CATAATTCTTAAGTGAAGTACAAATGAGCAA----TCTTTTATTTCCAAA------TAAAACCATGTAGTAGTG-GATTTTAGTTCTATCTATTGGTCTGAAACAGCAAATATAATTTTCTTC---CGCTGTCTAGCTGCAGCACAAGTATTGTTTT-
i mm10.chr13                   C 0 C 0
s canFam3.chr34                 30188312 519 -  42124431 TTATAGT--GAATTTTTCAAAAAATATACAAGCGAATACTGTTTTTATGTTTTTCCACAAATTTTAACTTACTGTAGATTCTTCTTTTTAAGGTCTCATTGGAATATAGACCTGTGATCGACAGAACTTTAAATGAGGCTGACTGTGCCACGGTCCCTCCAGCCATTCGCTCCTACTGATGAGACCAGA------GTTGAC-----CAGCTTTTGTAATTATGTATAATAGCTCATGCGTGTGTTCATATCCTAATTACCTTTTTAAAATCCTGTACTCAAGTGAATAAGGAGTGTCATTGGAATAGAGATCATCTACCCGGTAGCCAGAAG--CTTGCTAGTAA-TCAACAGCCAGGAA--GTGTGAATGAAGCTTACCTTTTGCTT---CATCATCCTTGTGAAATAATAAAACTGGGCATGATTCTTAAATAAAGCATAAATTACAAA-----CTTCTATTTCCAAGTCCATTTAAGAACTTGTACTATT-TGACTTGAGGCATGT-TGTTGACCTGAAA-------------------------------GATCAATATCCAGAAATTTTGTTG
i canFam3.chr34                C 0 I 1339
e chlSab2.chr4                  89628022   0 -  91010382 C
e macFas5.chr6                 180296669   0 - 181584905 C
e papAnu2.chr6                 173180881   0 - 174439528 C

a score=25276.000000
s hg38.chr3_KI270935v1_alt         56760 41 +    197351 CAGtttctttt----------ttttttttttttttttgagacagggt--------tggt
s panTro4.chr3_GL389630_random     21343 44 +    103936 CAGtttc---------------tttttttttttttttgagaccaggttggtgcagtggt
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199703215 42 + 202140232 TAGtt-----------------tttctttttttttttgagacaggatcggtgcagtggt
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120802247 41 + 123690457 TAGt------------------ttcttttttatttttgagacaggatcggtgcagtggt
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     22160 57 + 180491593 TGGTTTCtttttt-ttcttc-tttcttttctttttttgagacaggatcagtgcagtggt
i rheMac3.chr6                 C 0 C 0
s calJac3.chr2                    166539 59 - 204313951 CAGTTTCttctttcttcttcttcttcttcctttttttgagacaggatcagtgcagtggt
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46098902 29 - 120421639 ----------------------GTTCATTCTCTGTGTGAAGTAGGGCAGGT--------
i mm10.chr13                   C 0 I 696
e canFam3.chr34                 30188831 1339 -  42124431 I
e chlSab2.chr4                  89628022  0 -  91010382 C
e macFas5.chr6                 180296669  0 - 181584905 C
e papAnu2.chr6                 173180881  0 - 174439528 C

a score=521541.000000
s hg38.chr3_KI270935v1_alt         56801 439 +    197351 gcagtctcagctcactgcagcctcaaactcctgggcagctcaggtgatcttcccgactcagccttctaagtagctggggctacaggtgtgcaccaccacgcccagctcatttattttgtaattgtagggacagggtctcactttgttgcctaggctggtctcaaactgctgggcttaagtgatcgttcctccttggcctcccgaagtgctggaattataggtgtgaaccaccatgtctggcc---TTGTAGTTTATTTCTAAGTTCAAATTAATGTTGGTGCT-------------------------TTTCCTCCTTTTTTCTTAGCAGATGGTTTGCTAGGTGAGTGTGTCCTCGATTCTTTAAATcaggggtccccaatccccaggccacagattgtt-ccagtccatggcctgttaggaaccaggccacacagtaggaggtgagcagccagccagtgagcatta
s panTro4.chr3_GL389630_random     21387 439 +    103936 gcagtctcagctcactgcagcctcaaactcctgggcagctcaggtgatcttcccaactcagccttctgagtagctggggctacaggtgtgcaccaccatgcccagctcatttattttgtaattgtagggacagggtctcactgtgttgcctaggctgatctcaaactgctgggctcaagtgatcgttcctccttggcctcctgaagtgctggaattataggtgtgaaccaccatgtctggccTTATTGTAGTTTATTTCTAAGTTCAAATTAATGTTTGTGCT-------------------------TTTCCTCCTTTTTTCTTAGCAGATGGTTTGCTAG----GTGTGTCCTCGATTCTTTAAATcacgggtccccaatccccaggccacagattgttaccagtccatggcctgttaggaaccaggccacacagtaggaggtgagcagccggccagtgagcatta
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199703257 438 + 202140232 gcagtctcagctcactgcagcctcaaactcctgggcagctcaggtgatcttcccgactcagccttctgagtagttggggatacaggt-tgtgccaccacgcccagctcatttattttgtaattgtagggacagggtctcactgtgttgcctaggctggtctcaaactcctgggctcaagtgatcgtccctccttggcctcccgaagtgccggaattataggtgtggaccaccatgcctggcc---TTGTAGTTTATTTCTAAGTTCAAATTAATGTTGGTGCC-------------------------TTTCCTCC-TTTTTCTTGGCAGATGGTTTACTAGGTGAGTGTGTCCTCGATTATTTAAATcaggggtccccaatccccaggccacagattgttaccagtccatggcctgttaggaaccaggccacacagtaggaggtgagcagccggccagtgagcatta
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120802288 442 + 123690457 gcagtctcagctcactgcagcctcaaactcctgggcagctccggtgatcttcccgactcagccttctgagtagttggggctacaggtgtgcaccaccacacccagctcatttattttgtaattgtagggacagggtctcactgtgttgcctaggctggtctcaaactgctgggctcaagtgatcgtccctccttggcctcccaaagtgctggaattgtaggtgtgaactaccatgtttggccTTGTTGTAGTTTATTTCTAAGTTCAAATTAATGTTGATGCT-------------------------TTTCCTCC-TTTTTGTTGGCAGATGGTTTACTAGGTGAGTGTGTCCTTGATTATTTAAATcagtggtccccaatccccaggccacagatcattaccagtccatggcctgttaggaaccaggccacacagtaggaggtgagcagccggccagtgagcatta
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     22217 467 + 180491593 gcagtctcagtttactgcagcctcaaactcctgggcggctcaagtgatcttcccaacccagccttctgagtagttggggctacaggtgtgcaccaccatgcccagctaatttattttttaattgtagggacagggtctcactatgttgcctaggctggtctcaaactcctgggctcaggtgatccttcctccttggcctcccaaagtgctggaattataggtgtgaaccaccgtgcctggccTTATTGTAGTTTATTTCTAAGTTCAAATTAATGTTGGTGCCTGAGAGCGAATGGAGAAAACTAGTATTTCCTCC-CTTTTCTTGGCAGATGGTTTACTAGGTCAGTGTGTCCTCGATTATTTAAATcaggggtccccaatccccaggccacaaattggtaccactccatggcctgttaggaaccgggccgcacagtagggggtgggcagctggccagtgaacatta
i rheMac3.chr6                 C 0 C 0
s calJac3.chr2                    166598 465 - 204313951 gcaatctcagctcgctgcagcctcagactcctgggaggctcaggtgatcctcccagcccagcctcctgagcagttggggctataggtgtgcaccaccatgcccagccagtttattttttaattgtagaaac--ggtctcaccatgttgcctagcctggtctcaaactcctgggttcaagtgatcctccatccttggcctcccaaagtgctggaatgataggtgtgaaccaccatgcctggACTTGATGTTGTTTATTTGTAAGTTCAAATTGACGTTGGTGCCTGAGAGCAGATGGAGAAAATGAACATTTCCTCC-TTTTTCTTGACAGACGGTTTACTAGGTAAGCGTGTCCTCGATTATTTAAATcagggctccccagtccctaggccacagattgttaccagcccgtggcctgttaggaaccagaacacacagcaggaggtgagcagcaggccagtgagcctga
i calJac3.chr2                 C 0 C 0
e mm10.chr13                    46098931 696 - 120421639 I
e canFam3.chr34                 30188831 1339 -  42124431 I
e chlSab2.chr4                  89628022   0 -  91010382 C
e macFas5.chr6                 180296669   0 - 181584905 C
e papAnu2.chr6                 173180881   0 - 174439528 C

a score=110330.000000
s hg38.chr3_KI270935v1_alt         57240 146 +    197351 ctgtgtgagctccgccccctgccagagcattactgtgtgagctccaccccctgccagagcaTTACTGTGTGAGCTCCGCCCCCTGCCAgagcattactgtgtgagctccgc------------------------------cccctgtcagagcaTTACTGTGTGAGCTCCGCCCC
s panTro4.chr3_GL389630_random     21826 146 +    103936 ctgtgtgagctccgccccctgccagagcattactgtgtgagctccgccccctgccagatcaTTACTGTGTGAGCTCCGCCCCCTGCCAGAGCATTACTGTGTGAGCTCCGC------------------------------CCACTGCCAGAGCATTACTGTGTGAGCTCCGCCCC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199703695 144 + 202140232 ctgtgtgagctccgccccctgccagagcattactgtgtgagctccgccccctgccagatcaTTACTGTGTGAGCTCCGCCCCCTGCCAGAGCATTACTGTGTGAGCTTCGC------------------------------CTCCTGTC--ATCATTACTGTGTGAGCCCCGCCCC
i ponAbe2.chr3                 C 0 I 14
s nomLeu3.chr11                120802730 143 + 123690457 ctgtgtgagttcagccccctgtcagagcattac--tgtgagctccacccccagccagattattattgtctgagctccgcctcctgtcagagcattactgtctgagctccgc------------------------------cccctgtcagatcaTTACTGTGTGAGCTCCGCCC-
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     22684 176 + 180491593 ctgtgtgagctccgccccctgccagagcattactctgtgagctccaccttctgtcagatcattactgtgtgagctcctcctcctgtcagatcaTTACTGTGTGAGCCCCGCCTCCGTCAGATCATTACTGTGTGAGCCCCGCCCCCGTCAGATCATTACTGTGTGAGCCCCGCCCC
i rheMac3.chr6                 C 0 C 0
e mm10.chr13                    46098931 696 - 120421639 I
e canFam3.chr34                 30188831 1339 -  42124431 I
e calJac3.chr2                    167063   0 - 204313951 C
e chlSab2.chr4                  89628022   0 -  91010382 C
e macFas5.chr6                 180296669   0 - 181584905 C
e papAnu2.chr6                 173180881   0 - 174439528 C

a score=4255.000000
s hg38.chr3_KI270935v1_alt         57386 18 +    197351 CTGCCAGAG-ATTACTGTG
s panTro4.chr3_GL389630_random     21972 19 +    103936 CTGCCAGAGCATTACTGTG
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120802873 17 + 123690457 CTGTCATc--attactgtc
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     22860 18 + 180491593 -CGTCAGATCATTACTGTG
i rheMac3.chr6                 C 0 C 0
e mm10.chr13                    46098931 696 - 120421639 I
e canFam3.chr34                 30188831 1339 -  42124431 I
e calJac3.chr2                    167063  0 - 204313951 C
e chlSab2.chr4                  89628022  0 -  91010382 C
e macFas5.chr6                 180296669  0 - 181584905 C
e papAnu2.chr6                 173180881  0 - 174439528 C
e ponAbe2.chr3                 199703839 14 + 202140232 I

a score=71453.000000
s hg38.chr3_KI270935v1_alt         57404 112 +    197351 TGAGCTCCGCCCCCTGGCAGAGCATTACTG------------------------------TGTGAGCTCCGCCCCCTGGCAGAGCATTACTGTGTGAGCTCCGCCCCCTGCCAGAG-ATTACTGTGTGAGCTCCGCCCCCTGT
s panTro4.chr3_GL389630_random     21991 143 +    103936 TGAGCTCCGCCCCCTGCCAGAGCATTACTGTGTGAGCTCCGCCCCCTGCCAGAGCATTACTGTGAGCTCCGCCCCCTGCCAGAGCATTACTGTGTGAGCTCCGCCCCCTGCCAGAGCATTACTGTGTGAGCTCCGCCCCCTGC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199703853 109 + 202140232 TGAGCTCCGCCCCCTTCCAGAGCATTACTG------------------------------TGTGAGGTCCG-CCTCTGCCAGAGCATTACTGTGTGAGCTCCG-CCTCTGCCAGAACATTA--GTGTGAGCTCCGCCCCCTGT
i ponAbe2.chr3                 I 14 C 0
s nomLeu3.chr11                120802890 113 + 123690457 tgagctccgcctcctgtcagatcattactg------------------------------tgtgagctccgcctcctgtcaaatcattactgtctgagctccgccccctgtcagatcaTTACTGTGTGAGCTCCACCTCCTGT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     22878 110 + 180491593 TGAGCCCCGCCCCC-GTCAgatcattactg------------------------------tgtgagctccgcctcctgtcagatcaTTACTGTGTGAGCCCCG-CCCCCGTCAGATCATTACTGTGTGAGCCCCGCCCCCGT-
i rheMac3.chr6                 C 0 C 0
e mm10.chr13                    46098931 696 - 120421639 I
e canFam3.chr34                 30188831 1339 -  42124431 I
e calJac3.chr2                    167063   0 - 204313951 C
e chlSab2.chr4                  89628022   0 -  91010382 C
e macFas5.chr6                 180296669   0 - 181584905 C
e papAnu2.chr6                 173180881   0 - 174439528 C

a score=112683.000000
s hg38.chr3_KI270935v1_alt         57516 284 +    197351 CAGAGCATTACTGTGTGAGCTCCGCCCCCTGCCAGAGTATTACTGTGTGAGCTCTGCCCC--GTCAGAGCATTGCTGTGTGAGCTCCGCCCCCTGCCAGAGTATTACTGTGTGAGCTCCACCCCCTGTC--AGCATTACTGTGTGAGCTCCACCCCCGTC---GGCATTACTGTGTGAGCTCCGCCCCCTGCCAgagcattactgtgtgagctctgccccctgtcagagcaTTGCTGTGTGAGCTCCGCCCCCTGCCAGAGTATTACTGTGTGAGCTCCACCCCCTGTC--AG
s panTro4.chr3_GL389630_random     22134 293 +    103936 CAGAGCATTACTGTGTGAGCTCCGCCCCCTGCCAGAGCATTACTGTGTGAGCTCCGCCCCCTGCCAGAGCATTACTGTGTGAGCTCCGCCCCCTGCCAGAGCATTACTGTGTGAGCTCCGCCCCCTGCCAGAGCATTACTGTGTGAGCTCCGCCCCCTGCCAGGGCATTACTGTGTGAGCTCCGCCCCCTGCCAGGGCATTACTGTGTGAGCGCCGCCCCCTGCCAGAGCATTACTGTGTGAGCGCCGCCCCCTGCCAGAGCATTACTGTGTGAGCTCCGCCCCCTGCCAGAG
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120803003 253 + 123690457 --CagcattactgtgtgagctctgcctcctgtcagatcattactgtgtgagctccgccccctgtcaaatcattactgtctgagctccgccccctgtcagatcaTTACTGTGTGAGCTccgcctcctgtc----------------------------------agcattactgtctgagctctgcctcctgtcagatcaTTACTGTGTGAGCTACGCCCCCTGTCAAATCATTACTGTCTGAGCTCCGCCCC--GTCAGATCATTACTGTGTGAGCTCCGCCTTCTGTC--ag
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     22988 287 + 180491593 CAgatcattactgtgtgagctccgcctcctgtcagatcaTTACTGTGTGAGCCCCGCCTCC-GTCAgatcattactgtgtgagctccgcctcctgtcagatcattactgtgtgagctcctcctcctgtcagatcaTTACTGTGTGAGCCCCGCCTCCGTCAG-ATCATTACTGTGTGAGCCCCGCCCCC-GTCAgatcattactgtgtgagctccgcctcctgtcagatcaTTACTGTGTGAGCCCCGCCTCC-GTCAgatcattactgtgtgagctcctcctcctgtc--ag
i rheMac3.chr6                 C 0 I 161
e mm10.chr13                    46098931 696 - 120421639 I
e canFam3.chr34                 30188831 1339 -  42124431 I
e calJac3.chr2                    167063   0 - 204313951 C
e chlSab2.chr4                  89628022   0 -  91010382 C
e macFas5.chr6                 180296669   0 - 181584905 C
e papAnu2.chr6                 173180881   0 - 174439528 C
e ponAbe2.chr3                 199703962   0 + 202140232 C

a score=160712.000000
s hg38.chr3_KI270935v1_alt         57800 237 +    197351 CATTACTGTGTGAGCTCCACCCCC-GTC--AGCATTACTGTG---------------------------TGAGCTCCGCCCCCTGCCAGAGCATTACTGTGTGAGCTCCGCCCCCTGCCAGAGCATTAC--TGTGAGCTCTGCCCCCTGTCA--TCATTACTGTGTGAGCTCCGCCCCCTGTCA--TCATTACTGTGTGAGCTCCGCCCCCTGCCAGAGCATTACTGTGTGAGCTCCGCCCCCTGCCAGAGCATTACTGTGTGAGCTCCGCCC
s panTro4.chr3_GL389630_random     22427 244 +    103936 CATTACTGTGTGAGCTCCGCCCCCTGTC--ATCATTACTGTG---------------------------TGAGCTCCGCCCCCTGCCAGGGCATTACTGTGTGAGCTCCGCCCCCTGCCAGGGCATTACTGTGTGAGCTCCGCCCCCTGCCAGGGCATTACTGTGTGAGCTCCGCCCCCTGCCAGGGCATTACTGTGTGAGCTCCGCCCCCTGCCATATCATTACTGTGTGAGCTCCACCCCCTGCCAGATCATTACTGTGTGAGCTCTGCCC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199703962 263 + 202140232 CATTAC--TGTGAGCCCCGCCCCC-GTC--ATCATTACTGTGTGAGCCCCGCCCCCATGAGATCATTACTGAGCTCCGCCCCCTTCCAGAGCATTACTGTGTGAGGTCCG-CCTCTGCCAGAGCGTTAC--TGTGAGCTCTGTCCCCTGCCAGAACATTAGTGTGTGAGCTccgctccctgtca--tcattactgtgtgagctccgccccttgtcagatcaTTACTGTGTGAGCTCCGCCCCCTGTCAgatcattactgtgtgagctccgccc
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120803256 242 + 123690457 cattactgtctgagctctgcctcctgtcagatcattactgtg---------------------------tgagctccgccccctgtcaaatcattactgtctgagttccgccccctgtcagatcaTTACTGTGTGAGCTccgccccctgtca--gcattactgtctgagctccgcctcctgtcagatcaTTAC--TGTGAGCTCTGCCCCCTGTCAAATcattactgtctgagctccgccccctgtcagatcaTTACTGTGTGAGCTCCGCCC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     23436 242 + 180491593 cattactgtgtgagctcctcctcctgtcagatcaTTACTGTG---------------------------TGAGCCCCGCCCCC-GTCAgatcattactgtgtgagctcctcctcctgtcagatcaTTACTGTGTGAGCCCCGCCCCC-GTCAGATCATTACTGTGTGAGCCCCGCCTCC-GTCAgatcattactgtgtgagctcctcctcctgtcagatcaTTACTGTGTGAGCCCCGCCCCC-GTCAgatcattactgtgtgagctccgcct
i rheMac3.chr6                 I 161 C 0
e mm10.chr13                    46098931 696 - 120421639 I
e canFam3.chr34                 30188831 1339 -  42124431 I
e calJac3.chr2                    167063   0 - 204313951 C
e chlSab2.chr4                  89628022   0 -  91010382 C
e macFas5.chr6                 180296669   0 - 181584905 C
e papAnu2.chr6                 173180881   0 - 174439528 C

a score=44640.000000
s hg38.chr3_KI270935v1_alt         58037 133 +    197351 GCTGTC--ATCATTACTGTGTGAGCTCCGCCCCC----TG-----TCATTACTGTGTGAGCTCCGCCCCCTGTCATATCATTACTGTGTGAGCTCCGCCCCCTGTCATATCATTAT--TGTGagctccg---------------------------------------------------------cccctgtcatatcattg
s panTro4.chr3_GL389630_random     22671 192 +    103936 CCTGTC--GTCATTACTGTGTGAGCTCCGCCCCTGTCATG-----TCATTACTGTGTGAGCTCTGCCCCCTGTCTTATCATTACTGTGTGAGCTCCGCCCCCTGTC--ATCATTAC--TGTGAGCTCCGCCCCCTGTCAGAGCATTACTGAGCTCTGCCCCGTCCTCATTTCTGTGTGAGCTCTGCCCCCTGTCATATcattg
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120803498 133 + 123690457 -CTGTC--ATCATTACTGTCTGAGCTCCGCCTCC----TGTC--ATCATTACTGTGTGAGCTCCGCCCCCTGTC--AGCATTACTGTGT--GCCCCG-CCCCTGTCAGATcattactgtgtgagctccg--------------------------------------------------------ccccctgtcagatcatta
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     23678 142 + 180491593 cctgtcagatcattactgtgtgagctcctcctcc----tgtcagatcattactgtgtgagctccgcctcctgtcagatcattactgtgtgagctccgcctcctgtcagatcaTTACTGTGTGAGCCCCG---------------------------------------------------------CCTCCGTCAgatcatta
i rheMac3.chr6                 C 0 C 0
e mm10.chr13                    46098931 696 - 120421639 I
e canFam3.chr34                 30188831 1339 -  42124431 I
e calJac3.chr2                    167063   0 - 204313951 C
e chlSab2.chr4                  89628022   0 -  91010382 C
e macFas5.chr6                 180296669   0 - 181584905 C
e papAnu2.chr6                 173180881   0 - 174439528 C
e ponAbe2.chr3                 199704225   0 + 202140232 C

a score=13852.000000
s hg38.chr3_KI270935v1_alt         58170 17 +    197351 ctgtgtgagctccgcct
s panTro4.chr3_GL389630_random     22863 17 +    103936 ctgtgtgagctccgcct
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120803631 17 + 123690457 ctgtgtgagctccgcct
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     23820 17 + 180491593 ctgtgtgagctccgcct
i rheMac3.chr6                 C 0 C 0
s calJac3.chr2                    167063 16 - 204313951 ctatgtgagctccgcc-
i calJac3.chr2                 C 0 C 0
e mm10.chr13                    46098931 696 - 120421639 I
e canFam3.chr34                 30188831 1339 -  42124431 I
e chlSab2.chr4                  89628022  0 -  91010382 C
e macFas5.chr6                 180296669  0 - 181584905 C
e papAnu2.chr6                 173180881  0 - 174439528 C
e ponAbe2.chr3                 199704225  0 + 202140232 C

a score=227136.000000
s hg38.chr3_KI270935v1_alt         58187 201 +    197351 cctgtcagatcagtggtggcattagattctcataggagtg-gaatcctgttgtgaactgcgcatgagaaggatctaggttatgccccgcttatgagaatctaatactgatgatctgagatggaaccgtttcatctccaa---------accatccccacacttgtcagtggaaaaagtgtcttccgtgaaaccagtccctggtgccaaaaa
s panTro4.chr3_GL389630_random     22880 201 +    103936 cctgtcagatcagtggtggcattagattctcataggagtg-gaaccctgttgtgaactgcgcatgcgaaggatctaggttatgtcccgcttatgagaatctaatactgatgatctgagatggaaccgtttcatctccaa---------acgatccccacacttgtcagtggaaaaagtgtcttccgtgaaaccagtccctggtgccaaaaa
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199704225 199 + 202140232 cctgtcagatcagtggtggcattagattct--gaggagtg-gaaccctattgtgaactgtgcatgcgaaggatctaggttatgccccacttaggagaatctaatgcggatgatctgaggtggaaccgtttcatctccaa---------accattcccacacttgtcagtggaaaaagtgacttccatgaaaccagtccctggtgccaaaaa
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120803648 201 + 123690457 cctgtcaggtcagtggtggcattagattctcataggagtg-gaaccctattgtgaactgtgcatgccaagggtctaggttatgcgctgcttatgagaatctaatgctgctgatctgaggtggaaccgtttcatctccaa---------accatccccacacttgtccgtggaaaaagtgtcttccatgaaaccagtccctggtaccaaaaa
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     23837 210 + 180491593 cctgtcagatcagtggtggcattagattctcataggagtg-gaaccctgttgtgaactgcgcatgcgaaggatctaggttatgcgccgcttttgagaatttaatgctcatgatctgaggtggaaccgtttcatctccagaccatccccaccatccccacacttgtccatggaaaaagtgtgttccgtgaaaccagtccctggtgccaaaac
i rheMac3.chr6                 C 0 C 0
s calJac3.chr2                    167079 197 - 204313951 -ctgtcagatcagcggtggcattagattctcctgggagcacaaaccctactgtgaactgcacattcgagggatctgggttatgc-----------gagtctaatgccgatgatctgaggtggaaccgtttcgtccccaaaccatcc--cccatccccacacttgtccctggaaaaagtgtcttccatgaaaccagtccctggtgccagaaa
i calJac3.chr2                 C 0 C 0
e mm10.chr13                    46098931 696 - 120421639 I
e canFam3.chr34                 30188831 1339 -  42124431 I
e chlSab2.chr4                  89628022   0 -  91010382 C
e macFas5.chr6                 180296669   0 - 181584905 C
e papAnu2.chr6                 173180881   0 - 174439528 C

a score=749347.000000
s hg38.chr3_KI270935v1_alt         58388 257 +    197351 ggttagggactgccgGTTTAAATAACCAAATGCTAAAAGAACTGGCATAGAAGT-AAATGGGCTGCTGCTTTATTTTTAGGCTGTTCTTTTTAGAGAGCAATGACAGTTATTTCCAAGTTTGTCATTAGAAAATAATAttaggttggagcaaaagtaattgcagtatttgccattgctttcaatggtaaaaggcacaattacttttgcagcaacttaaTATTATAAATTTGTT-CTTAAAGTGTATTTTTGATAAGAAA
s panTro4.chr3_GL389630_random     23081 258 +    103936 ggttagggactgcCAGTTTAAATAACCAAATGCTAAAAGAACTGGCATAGAGGT-AAATGGGCTGCTGCTTTATTTTTAGGCTGTTCTTTTTAGAGAACAATGACAGTTATTTCCAAGTTTGTCATTAGAAAATAATAttaggttggagcaaaagtaattgcagtttttgccattgctttcaatggtaaaaggcacaattacttttgcagcaacttaaTATTATAAATTTGTTCCTTAAAGTGTATTTTTGATAAGAAA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199704424 256 + 202140232 ggttagggatcgcCAGTTTAAATAACCAAATGCTAAAAGAACTGGCATAGAAGT-AAATGGGCTGCTGCTTTATTTTTAGGCTGTTGTTTTTAGAGAACAATGACAGTTATTTCCAAG--TGTCATTAGAAAATAATAttaggttggagcaaaagtaattgcggtttttgctattgctttcaatggtaaaagccacaattacttttgcaccaacttaaTATGATACATTTGTTCCTTAAAGTGTATTTTTGATAAGAAA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120803849 258 + 123690457 ggttagggaccgcCAGTTTAAATAACCAAATGCTAAAAGAACTGGCATAGAAGT-AAATGGGCTGCTACTTTATTTTTAGGCTGTTGTTTTTAGAGAACAATGACAGTTATTTCCAAGTTTGTCATTAGAAAATAATAttaggttggtgcaaaagtaattgcggtttttgtcattgctttcaatggtaaaagccacaattacttttgcaccaccttaaTATGATAAATTTGTTCCTTAAAGTGTATTATTGGTAAGAAA
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     24047 258 + 180491593 ggttagggaccgcCAGTTTAAATAGCCAAATACTAAAAGAACTGGCGTAGAAGTAAAATGGGCTGCTGCTTTATTTTTAGACTGTTCTTTTTAGAGAATAATGACAATTATTTCCAAGTTCGTCATTAGAAAATAATAttaggttggtgcaaaagtaattgcagtttttgccattactttcaatggtaaaagccac-attacttttgcaccaacttaaTATGATAAATTTGTTCCTTAAAGTGTATTTTTGGTAAGAAA
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180296669 254 - 181584905 GGTTAGGGACCGCCAGTTTAAATAACCAAATACTAAAAGAACTGGCATAGAAGT-AAATGGGCTGCTTCTTTATTTTTAGGCTGTTCTTTTTAGAGAACAATGACAATTATTTCCAAGTTTGTCATTAGAAAATAGTAttaggttggtgcaaaagtaattgcagttttggccattactttcagtggtaaaagccac----aattttgcaccaacttaaTATGATAAATTTGTTCCTTAAAGTGTATTTTTGGTAAGAAA
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173180881 254 - 174439528 GGTTAGGGACCGCCAGTTTAAATAACCAAATACTAAAAGAACTGGCATAGAAGT-AAATGGgctgcttctttatttttaggCTGTTCTTTTTAGAGAACAATGACAATTATTTCCAAGTTTgtcattagaaaataatattaggttggtgcaaaagtaattgcagttttggccATTACTTTCAGTGGTAAAAGCCAC----aattttgcaccaacttaatatgaTAAATTTGTTCCTTAAAGtgtatttttggtaagaaa
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89628022 254 -  91010382 GGTTAGGGACCGCCAGTTTAAATAACCAAATACTAAAAGAACTGGCATAGAAGT-AAATGGGCTGCTTCTTTATTTTTAGGCTGTTCTTTTTAGAGAACAATGACAATTATTTCCAAGTTTGTCATTAGAAAATAATAttagggtggtgcaaaagtaattgcagttttggccattactttcagtggtaaaagccac----aattttgcaccaacttaaTATGATAAATTTGTTCCTTAAAGTGTATTTTTTGTAAGAAA
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    167276 258 - 204313951 ggttagggaccactgGTCTAAGTCACCAAATACTAAAGGAACTGAAGTAGAAGT-AAATGGGCTGCTGCTTTATTTTTGGGCTGTTCTATTTATAGAACAATGACAGGTACTTCCAAGTTTGTCATTAGAAAATAATTttaagttggtgcaaaagtaattgcggtttttgccattactttcaatggtaaaagccacaattacttttgcactaacttaaTATTATAAATTTGTTCCTTAAAGTGTATTTTTGGTAAGGAA
i calJac3.chr2                 C 0 I 360
e mm10.chr13                    46098931 696 - 120421639 I
e canFam3.chr34                 30188831 1339 -  42124431 I

a score=17859.000000
s hg38.chr3_KI270935v1_alt         58645 9 +    197351 GCCGTTTTG
s panTro4.chr3_GL389630_random     23339 9 +    103936 GCCCTTTTG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199704680 9 + 202140232 AACCTTTTG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120804107 9 + 123690457 GACCTTTTG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     24305 9 + 180491593 AACCTTTTG
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180296923 9 - 181584905 AACCTTTTG
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173181135 9 - 174439528 aacCTTTTG
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89628276 9 -  91010382 AACCTTTTG
i chlSab2.chr4                 C 0 C 0
e mm10.chr13                    46098931 696 - 120421639 I
e canFam3.chr34                 30188831 1339 -  42124431 I
e calJac3.chr2                    167534 360 - 204313951 I

a score=1115735.000000
s hg38.chr3_KI270935v1_alt         58654 436 +    197351 TTTTTCCTTCTGTTAAttttttg------tttttttcttggtcgagacagagtcttgccatgctgcccaggctggagtgcagtggtgtgatctcggctcactgcagcctccacctcctgggctccagcagtcctcccacctcagcctccctaaga------------------------------gctgagactacaggtgtgagccaccatgcctggctaattttt--------------------------------------------------------------------------------agagacagggtttcaccctcttgcccaggctggtcccaaactcctgggctcaagcagtcctcctgcctcagcctcccagagtattgggattataggtgtgagccactgcCAGAAAAACGTTTCCTAAGACAAGGCAGGTCTTACATTATATTTAAA-------TTTTTTTT------------AATGATGTCTTTTTTGGCAGTGCACAGCCAGAGGACAACACATCAC---ACACAAGAAA---CAGTTGTGCTCATGTGATGGGG---GCc
s panTro4.chr3_GL389630_random     23348 436 +    103936 TTTTTCCTTCTGTTAAttttttg------tttttttcttggtagagacagagtcttgccatgctgcccaggctggagtgcagtgatgtgatctcggctcactgcagcctccacctcccgggctccagcagtcctcccacctcaacctccctaaga------------------------------gctgagactacaggtgtgagccaccatgcctggctaattttt--------------------------------------------------------------------------------agagacagggtttcaccatcttgcccaggctggtcccaaactcttgggctcaagcagtcctcctgcctcagcctgccagagtattgggattataggtgtgagccactgcCAGAAAAACGTTTCCTAAGACAAGGCAGGTCTTACattatatttaaa-------tttttttt------------aatGATGTCTTTTTTGGCAGTGCACAGCCAGAGAACAACACATCAC---ACACAAGAAA---CAGTTGTGCTCATGTGATGGGG---GCc
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199704689 437 + 202140232 TTTTTCCTTCATTTAAttttttg------tttttttcttggtagagacagagtcttgccatgctgtccaggctggagtgcagtggtgtgatctcggctcactgcaacctccacctcccgggctccagcaatcctcccacctcagcctccctagga------------------------------gctgagactacaggtgtgagccgccatgcctggctaattttt--------------------------------------------------------------------------------agagacagggtttcaccatcttgcccaggctggtctcaaactcctgggctcaaggagtcctcctgcctcagcctcccagaatattgggattataggtgtgagccactgcCAGAAAAACTTTTCTTAAGATAAGGCAGGGTTTACATTATATTTAGA------TTTTTTTTT------------AATGATGTCTTTTTTGGCAGTGCACAGCCAGAGAACAACACATCAC---ACACAGGAAA---CAGTTGTGCTCATGTGATGGGG---GCc
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120804116 439 + 123690457 TTTTTCCTTCTATTAGttttttg----gttttttttcttggtagagacagagtcttgccatgctgcccaggctggagtgcagtggtgtgatctcggctcactgcagcctccacctcccgggctccagcaat-ctcccacctcaacctccctagga------------------------------gctgagactacaggcgtgagccatcatgcctggctaattttt--------------------------------------------------------------------------------agagacagggtttcaccatcttgcccaggctggtctc-aactcctgggctcaagcagtcctcctgcctcagcctcccagagtattgggattataggtgtgagccactgcCAGAAAAACTTTTCCTAAGGCAAGGCAGGTTTTACATTATATTTAGA-------TTTTTTTT---------TTAAATGATGTCTTTTTTGGCAGTGCACAGCCAGAGAACAACACATCAC---ACACAGGAAA---CAGTTGTGCTCATGTGATGGGG---GCc
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     24314 468 + 180491593 TTTTTCCTTCTATTAAttttttg----g-tttttttcttggtagagacagagtcttgccatgctgcccaggctggagtgcagtggtgtgatctcggctcactacaacctccaccgcccgggctccagcaatcctccagcctctgcctcccaaggannnnnnnnnnnnnnnnnnnnnnnnnnnnnn------------------------------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn------------------------------tgagctcaaactcctgggctcaagcagtcctcctgcctcagcctcccagagtattgggattataggtgtgagccactgcCAGAAAAAC-TTTCCTAAGGCAAGGCAGGTTTTACattatatttagattttttttttttttt------------aatGATGTCTTTTTTGGCAGTGTACAGCCAGAGAATAACACATCAC---ACACAGGAAA---TAGTTGTGCTTATGTGAT-GGG---GCc
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180296932 448 - 181584905 TTTGTCCTTCTATTAAttttttg----g-tttttttcttggtagagacagagtcttgccatgctgcccaggctggagtgcagtggtgtgatctcagctcactacaacctccacttcccgggctccagcaatcctccagcctccgcctcccaagga------------------------------gctgagactacaggtgtgagccactatgcctggctaatttttatatttttttac--------------------------------------------------------------------agagatggggtttcaccatctcgcccaggctgagctcaaactcctgggctcaagcagtcctcctgcctcagcctcccagagtattgggattataggtgtgagccgctgcCAGAAAAAC-TTTCCTAAGGCAAGGCAGGTTTTACATTATATTTAGA------TTTTTTTTT------------AATGATATCTTTTTTGGCAGTGCACAGCTAGAGAACAACACATCAC---GCAGAGGAAA---CAGTTGTGCTTATGTGAT-GGG---GCc
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173181144 453 - 174439528 TTTGTCcttctattaattttttgttttt-ttttttttttggtagagacagagtcttgccatgctgcccaggctggagtgcagtggtgtgatctcagctcactacaacctccaccgcccgggctccagcagtcctcccgcctcagcctcccaagga------------------------------gctgagactacaggtgtgagccaccatgcctggctaatttttatatttttttat--------------------------------------------------------------------agagactgggtttcaccatcttgcccaggctgatctcaaattcctgggctcaagcagtcctcctgcctcagcctcccagagtattgggattatgggtgtgagccactgccagAAAAAC-TTTCCTAAGGCAAGGCAGGTTTTAcattatatttaga-----tttttttttt------------aatgatatctttTTTGGCAGTGCACAGCTAGAGAACAACACATCAC---ACAGAGAAAA---CAGTTGTGCTTATGTGAT-GGG---GCC
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89628285 450 -  91010382 TTTGTCCTTCTATTAAttttttg----g--ttttttcttggtagagacagagtcttgtcatgctgcccaggctggagtgcagtggtgtgatctcagctcactacaacctccacttcccaggctccagcaatcctcccacctcagcctcccaagga------------------------------gctgagactacaggtgtgagccaccatgcctggctaatttttatatttttttat--------------------------------------------------------------------agagactgggtttcaccatcttgcccaggctgatctcaaattcctgggctcaagcagtcctcctgcctcagcctcccagagtattgggattataggtgtgagccactgcCAGAAAAAC-TTTCCTAAGGCAAGGCAGGTTTTACATTATATTTAGA---TTTTTTTTTTTT------------AATGATATCTTTTTTGGCAGTGCACAGCTAGAGAACAACACATCAC---GCAGAGGAAA---CAGTTGTGCTTATGTGAT-GGG---GCc
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    167894 446 - 204313951 ttttttcttctattaatt-----------tttttttcttggtagagatgggttcttgccatgctgcccaggctggagagcagtgctgtgatctcagctcactgcaacctccacctcctgggctccagcagtcctcccac-------------gga------------------------------gctgagactacaggcatgagccaccatgcctggctaatttttatatgttttgt---------------------------------------------------------------------agagatggggtttcaccatcttgaccaggctggtcttaaactcctgggctcaagcagtcctcct---tcagcctcccaaagtgttgggattataggtgtgagccgctgcCAGAAAACCTTTTCCTAAGACAAGGCAGGTTTTACATTATATTTAGC------TCTTTTTTTGTGTGTGTTTTGAATGAAGTCTTTTTTCGCAGTGCACAGCT-GAGAAcccctcaccacagaagacaggaaagttgtgctgtgcccacgtgat-gggcactcc
i calJac3.chr2                 I 360 C 0
e mm10.chr13                    46098931 696 - 120421639 I
e canFam3.chr34                 30188831 1339 -  42124431 I

a score=812754.000000
s hg38.chr3_KI270935v1_alt         59090 290 +    197351 tcagcactaggaaggagtggactgttggcgcacgcagcagcttgaataaatctgaa---------agtcactacgctgcgtaagagaagccaaat---aa-agcgcatgctgtgtacagagggtgtcgagaatgcctcctacgtgacg------gaaagcagatccgtggttccctgcagact------ggcaggagcagattccaaaggcacaggaagaagctt---GCAGGTA--GAATGTGTTCATTACCTTCTGCGCATTATACC--ACAAAAA-AGCTGGGAATAAAAATGCTAACC--AAAAAAAAAGGTGAAAGTa-ga
s panTro4.chr3_GL389630_random     23784 289 +    103936 tcagcactaggaaggagtggactgttggcgcacgcagcagcttgaataaatctgaa---------agtcactacgctgcgtaagagaagccaaat---aa-agcgcatgctgtgtacagagggtgtcgagaatgtgtcctacgtgacg------gaaagcagatccgtggttccctgcagact------ggcaggagcagattccaaaggcacaggaagaagctt---GCAGGTA--GAATGTGTTCATTACCTTCTGCACATTACACC--ACAGAAA-AGCTGGGAATAAAAATGCTAACC---AAAAAAAAGGTGAAAGTa-ga
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199705126 295 + 202140232 tcagcactaggaaggagtggactattggcgcatgtagcagcttgaataaatctgaa---------agtcactacactgcgtaagagaagccaaataaaaa-agttcatgctgtgtacagagggtgttgagaatgcctcctacgtgacg------gaaagcagatccgtggttcccTGCAGACC------GGCAGGAGCAGATTCCAAAGGCACAGGAAGAAGCTT---GCAGGTA--GAATGTGTTCATTACCTTCTGCGCATTATACC--ACAAAAA-AGCTGGTAATAAAAATGCTAACC-AAAAAAAAAAGGTGAAattagga
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120804555 295 + 123690457 tcagcacta-gaaggagtggactattggcacacgcagcagcttgaataaatctgaa-------acagtcaccacgctgcgtaagagaagccaaataaaaa-agcgcatgctgtgtatagagggtgtcgagaatgcctcctgcgtgaca------gaaagcagatCCATGCTTCCTTGCAGACT------GGCAAGAGCAGATTCCAAAGGCACAGGAAGAAGCTT---GCAGGTA--GAATGTGTTCATTACCTTCTGTGCATTCCACC--ACAAAAA-AGctggtaattaaaatgctaacc--aaaaaacaaggtgaaaccagga
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     24782 294 + 180491593 tcagcactaggaaggagtggactgttggcacatgcagcagcttgaataaatctgaa---------agtcactatgctgcgtaagagaagccaaataaaaa-agtgcatgctgtgtacagagggtgtcgagaatgcctcctgtgtgaca------gaaagcagatccgtggttccctgcagact------ggcaggagcagattccaaaggcacaggaagaagctt---GCAGGTA--GAATGTGTTCATTACCTTCTGTGCATTACACCAAAAAAAAA-Agctggtaataaaaatgctaacc----aaaaattggtgaaactagga
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180297380 293 - 181584905 tcagcactaggaaggagtggactgttggcacatgcagcagcttgaataaatctgaa---------agtcactatgctgcgtaagagaagccaaataaaaa-agtgcatgctgtgtacagagggtgtcgagaatgcctcctgtgtgaca------gaaagcagatccgtggtt-cctgcagact------ggCAGGAGCAGATTCCAAAGGCACAGGAAGAAGCTT---GCAGGTA--GAATGTGTTCATTACCTTCTGTGCATTACACC--AAAAAAA-AGCTGGtaataaaaatgctaacc--aaaaaaaaaggtgaaactagga
i macFas5.chr6                 C 0 C 0
s papAnu2.chr6                 173181597 291 - 174439528 TCAGCACTAGGAGGGAGTGGACTGTTGGCACATGCAGCAGCTTGAATAAATCTGAA---------AGTCACTATGCTGCATAAGAGAAGCCAAATAAAAA-AGTGCACGCTGTGTACAGAGGGTGTCGAGAGTGCCTCCTGTGTGACG------GAAAGCAGATCCGTGGTC-CCTGCAGACT------GGCAGGAGCAGATTCCAAAGGCACAGGAAGAAGCTT---GCAGGTA--GAATGTGTTCATCACCTTCTGTGCATTACACC--aaaaaaa-aGCTGGTAATAAAAATGCTAACC----AAAAATTGGTGAAACTAGGA
i papAnu2.chr6                 C 0 C 0
s chlSab2.chr4                  89628735 305 -  91010382 tcagcactaggaaggagtggactgttggcacatgcagcagcttgaataaatctgaaagtcactatagtcactatgctgcgtaagagaagccaaataaaaa-agtgcatgctgtgtacagagggtgtcgagaatgcctcctgtgtgacg------gaaggcagatctgtggttccctgcagact------ggCAGGAGCAGATTCTTAAGGCACAGGAAGAAGCTTGCAGCAGGTA--GAATGTGTTCATTACCTTCTGTGCATTACACC--AAAAAAA-AGCTGGtaataaaaatgctaacc---aaaaaaaaggtgaaactagga
i chlSab2.chr4                 C 0 C 0
s calJac3.chr2                    168340 275 - 204313951 tcagcactgggaaggaatgcactattggcacacacagcagcttggatcaatctgaa---------agtcactacactgagttagagaagccaaataaaaagagtataggctgtg------------------tgactcc-aCGTG-CA------CAGTGTCGA--CACGGTTCCCTGCAGAGT------GGCAGGAGCAGATTCCAAAGGCACAGGAAGAAGCTT---GCGGGTA--GAATGTGTTCAATCCCTTCTGCACATTATACC--ACAAAAAGAGCTGGtaataaaaatgctaacc-aaagaaaaaaggcgaaactagga
i calJac3.chr2                 C 0 C 0
s mm10.chr13                    46099627 294 - 120421639 tcactactagaaaaggacgggct-ttggtatacacagcagcatggatgaatctcaa---------tgctattgacaagggta--agaagtcaag----aa-ggtacacactgattgcacttgaagtctagaa--actgctaactgacatgtaataacagaagatcagTAGCTCTATGCAGATTTGGAAAAGGAGGAAGAGGTCCCTAAGAT-TAGGAGGAAAGCT---TTATGTGATAATTATGTTTGTTATTTTCTGCTAATTATACC--TCAAAAC------TTAAAAAagaaggaagaggaggaagaagaggaggaaagaga-
i mm10.chr13                   I 696 I 2341
e canFam3.chr34                 30188831 1339 -  42124431 I

a score=784841.000000
s hg38.chr3_KI270935v1_alt         59380 297 +    197351 taaaatttctcaactgtgtgatgggtaaacgtgcaggtttgctgtcatgctttgtttatgaagctgt-ggggtacaaggactctcatacgtcactgtggaatgcagaacgttgcagcctcatggaagaggatttggcagcatctaacaaaacgacatggcatttgcccttagactcagcaattcta-gaatctgcctc-aaaaaaaactctggcaaagaaatgaaaggactttatccacagagttcttttcacagcctgaatgtgtttgccacaaagttcttcactgtggcatttgtaaa----------
s panTro4.chr3_GL389630_random     24073 298 +    103936 taaaatttctcaactgtgtgatgggtaaacgtgcaggttggctgtcatgctttggttatgaagctgt-ggggtacaaggactctcatacgtcactgcggaatgcagaacgttgcagcctcatggaagaggatttggcagcatctaacaaaactacatggcatttgcccttagactcagcaattcta-gaatctgcctcaaaaaaaaactctggcaaagaaatgaaaggactttacccacagagttcttttcacagcctgaatgtgtttgccacaaagttattcactgtggcgtttgtaaa----------
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199705421 297 + 202140232 taaaatttctcaactgtgtgatgggtaaacgtgcgggtttgctgtcatgctttgtttgtgaagctgt-gggttacagggactctcatacgtcactgtggaatgcagaacgttgcagcctcatggaggaggatttggcagcgtctaacaaaactacctggcatttgccctttgactcagcaattcta-gaatctgcctc-aaaaaaaactctggcaaagaaatgaaaggagtttacacacagagttcttttcacagcctgaatgtgtttgcaacaaagttcttcactgtggcctttgtaaa----------
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120804850 296 + 123690457 taaaatttctcaactgtatgatgggtaaacgtgtaggtttgctgtcatgctttgtttatgaagctgt-gtggtacaaggactctcatacgtcactgtggaatgcagaacgttgcagcctcatggaagaggatttggcagcatctaacaaaactacatggcatttgccctttgactcagcaattcta-gaatcttcctc--aaaaaaactctggcaaagaaatgaaaggactttacgcacagagttcttttcacagcctgaatgtgtttgcaacaaagttcttaactgtggcatttgtaaa----------
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     25076 294 + 180491593 tgaaatttcttacctgtgtgattggtaaacgtgcaggtttgccatcatgctttgtttatgaagctgt-ggggtacaaggactctcatacctcactgtggaatgcagaacgttgcagcctcgtggaagaggatttggcagcgtctaacgaaagtatgtagcatttgccctttgactcagcaattctg-gaatctgcatc--aaaaaaa--ctggaaaagaaatgaaaggactttatgcacagagttcttttgacagcctgaatgtgtttgcaaccaagttcttcactgtggcatttgtaaa----------
i rheMac3.chr6                 C 0 C 0
s macFas5.chr6                 180297673 296 - 181584905 tgaaatttcttacctgtgtgattggtaaacgtgcaggtttgccatcatgctttgtttatgaagctgt-ggggtacaaggactctcatacctcactgtggaatgcagaacgttgcagcctcgtggaagaggatttggcagcatctaacaaaactatgtggcatttgccgtttgactcagcaattcta-gaatctgcctc--aaaaaaactctggcaaagaaatgaaaggactttacgcacagagttcttTTCACAGTCTGAATGTGTTTACAACAAACTTCTTCACTGTGGCGTTTGTAAA----------
i macFas5.chr6                 C 0 N 0
s papAnu2.chr6                 173181888 295 - 174439528 TGAAATGTCTTACCTGTGTGATTGGTAAACGTGCAGGTTTGACGTCATGCTTTGTTTGTGAAGCTGTGGGGGTACAAGGACTCTCACACCTCACTGTGGAATGCAGAACGTTGCAGCCTCGTGGAAGAGGATTTGGCAGCGTCTAACGAAAGTATGTAGCATTTGCcgtttgactcagcaattctg-gAATCTGCAtc--aaaaaaa--ctggaaaagaaatgaaaggacttTACGCACAGAGTTCTTTTCACAGTCTGAATGTGTTTACAACAAACTTCTTCACTGTGGCATTTGTAAa----------
i papAnu2.chr6                 C 0 N 0
s chlSab2.chr4                  89629040 296 -  91010382 tgaaatttcttacctgtgtgattggtaaacgtgcaggtttgccatcatgttttgtttatgaagctgt-ggggtacaaggattctcgtacgtcactgtggaatgcagaacgttgcagcctcgtggaagaggatttggcagcgtctaacgaaagtatgtggcatttgccctttgactcagcaattcta-gaatctgcctc--aaaaaaactctggcaaagaaatgaaaggactttacgcacagagttcttttcacagcCTGAATGTGTTTACAACAAAGCTCTTCACTGTGGCATTTGTAAA----------
i chlSab2.chr4                 C 0 N 0
s calJac3.chr2                    168615 282 - 204313951 taaagtgtctcacccgtgtgactggtaaacaggcaggtttgctgtcaggcttcgtttgtgaagatgt-agggtacaaggactc----acaccggtgtggagtgcagaatgctgcggcctcagggaagaggatttgtcagcatctgac--agctgcatggcatttgctctttgacttaacaattctagggatctgtctc--taagacactctggcggagaaatgaaag-----------------ccttctcacggcctgagtgtgtctg--acaaagttcttcaccgtggcattgaagaaccggaataat
i calJac3.chr2                 C 0 C 0
e mm10.chr13                    46099921 2341 - 120421639 I
e canFam3.chr34                 30188831 1339 -  42124431 I

a score=669388.000000
s hg38.chr3_KI270935v1_alt         59677 569 +    197351 actggaaacaatcaaaatgtccatcagtaagggattaggaacattaattcgtgcagtggggaactccgtaccagaaggaggaatgaggaaCGCCTATTGATAAGGGGCAGAGTACATATAATATAATGCAAATATATATTTGCTTTTTCTTAAAACAGTACAAAGATAAAAATCTAAAGTGGTTGCTGTGGAGGACaggggtcagtggtggaagtgagaccgaaatagactctgaagtaata-tctggactttgaaattgtaagtgttttacatattaccaaac-taagtttttaagatagtccctaaaattgaaagaatggtatctgaaatgaatgaatctaaATTCCTTGGATTGCATTCTAC-AGGCGCCAACCCTGAGACAAAAATTTGGAAGGTGGCCCTGAGCAGCA-----GCTGAAGGGAAGTGGGAGGTGAGACAGGAAAGAGGCGGCAGCATGGGGCGTCCGGGAGCCGGGTCTCATGTGGACAGCTGGGCCCGTGTTCACTGTGGGAGCTGGTGCGTTCCTTCACCAGCCCACGCTGCACAGGTTCAGGATGGTCAATTCCGGGCA
s panTro4.chr3_GL389630_random     24371 568 +    103936 actggaaacaatcaaaatatccatcagtaggggattaggaacattaattcgtgcagtggggaactccgtaccagaaggaggaatgaggaacgcctattgataaggggcagagtgcatatcatatgatgcaaatatata-ttgctttttcttaaaacagtacaaagataaaaatctaaagtggttgctgtggaggacaggggtcagtggtggaagtgagaccgaaatagactctgaagtaata-tctggactttgaaattgtaagtgttttacatattaccaaac-taagtttttaagatagtccctaaaattgaaagaatggtatctgaaatgaatgaatctaaATTCCTTGGATTGCATTCTAC-AGGCGCCAACCCTGAGACCAAAATTTGGAAGGTGGCCCTGAGCAGCA-----GCTGAAGGGAAGTGGGAGGTGAGACAGGAAAGAGGCGGCGGCACGGGGCGTCTGGGAGCCGGGTCCCATGTGGACAGCTGGGCCCGTGCTCACTGTGGGAGCTGGTGTGTTCCTTCACCAGCCCACGCTGCACAGGTTCAGGATGGTCAATTCCGGGCA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199705718 569 + 202140232 actggaaacaatcaaaatgtccatcagtaggggattaggaacattaattcgtgcagtggggaactcagtaccagaaggaggaatgaggaagGCC-ATTGATAAGGGGCAGAGTACATATCATATAATGCAAATATATATTTGCTTTTTCTTAAAACAGTACAAAGATAAAAATCTAAAGTGGTTGCTGTGGAGGACAGGGGTCAGTGGTGGAAGTGAGACTGAAATGGACTCTGAAGTAATA-TCTGGACTTTGAAATTGTAAGTGTTTTACATATTACCAAACTTAAGTTTTTAAGATAGTCCCTAAAATTGAAAGAATAGTATCTGAAATGAATGAATCTAAATTCCTTGGATTGCATTCTAC-AGGCGCCAACCCTGAGACCAAAATTTGGAAGGTGGCCCTGAGCAGGA-----GCTGAAGGGAAGTGGGAGGTGAGACAAGAAAGAGGCGGAGGCATGGGGCATCCAGGAGCCAGGTCCCACGTGGGCAGCTGGTCCCATGCTCACTGTGGGAACTGGTGTGTTCCTTCACCAGCCCACGCTGCACAGGTTCAGGATGGTCAATTCCAGGCA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120805146 567 + 123690457 actggaaacaatcaaaatgtccatcagtaggggattaggaacattaattcgtacagtggagaactcagtaccagaaagaggaatgaggaatgcctattgataa-gggcagagtgcatataatataatgcaaatatatatttgctttttcttaaaacagtacaaagataaaaaactaaagtggttgctgtggaggacaggggtcagtggtggaagtgagaccgaaatagactctgaagtaata-tctggactttgaaattgtaagtgttttacatattaccaaac-taagtttttaagatagtccctaaaattgaaagaatagtatctgaaatgaatgaatctaTATTCCTTGGATTGCATTCTAC-AGGTGCCAACCCTGAGACCAAAATTTGGAAGGTGGCCCTGAGCAGCAGGGCTGCTGAAGGGAAGCGGGAGGTGACACAGGAAAGAGGTGGCGGCACGGGGT------GAGCCAGGTCCCATGTGGGCAGCTGGGCCTGTGCTCACTGTGGGAGCTGGTGTGTTCCTTCACCAGCCCACGCTCCACAGGCTCAGGACGGTCAATTCCGGGCA
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     25370 569 + 180491593 accggaaacaatcaaaatgtccatcagtaggggattaggaacattaatttgcacagtggggaactcagtaccagaaagaggaatgaggaaggcctATTGATAAGGAGCAGAGTACatataatataatgcaaatatgtatttgctttttcttaaaacagtacaaagatagaaaactaaagtggttgctgtggaggacaggggtcagtggtggaagtgagactgaaatagactctgaagtaata-cctggaccttgaaattttaaatgttttacatattaccaaac-taagtttttaagatagtccctaaaattgaaagaatagtatctgaaatgaatgaatctaaATTCCTTGGATTGCATTCTAC-AGGCACCAACCCTGAGATCAAAATTTGGAAGGTGGCCCTGAGCACTA-----GCTGAAGGGAAGCAGGAGGTGGGACAGGAAAGAGGTGGTGTCGTGGGGCGTCCAGGAGCCAGGTCCCACAAGGGCAGCTGGGCCCGTGCTCACTGTGGGAGCTGGTGCGTTCCTTCACCAGCCAACGCTCCACAGGTTCAGGACGGTCAATTCCAGGCA
i rheMac3.chr6                 C 0 C 0
s calJac3.chr2                    168897 558 - 204313951 actggaaacaatacaaacgtccgtcagtcggggattaggaacattaactcccacagtgagtaactcagtacaggaagaaggaatgaggaaggcc---tGAGGAGGGGCAGAGTACCTATGATATAATGCAAATATATATTTGCTTTTTCTTAAAACAGCAGAAAGAT-------TAGTGTGGTTGCTGTAGGGGAT-GGGGTCTGTGGT-GAAGAAAAACTGAAATCGATTCTGAAGTAATACTTTGGACTTTGAAATTGTAAATGTTTTACTTACTACCAAAC-TAAGTTTTTAAGGTAGTCTCTAAAATTGAAAAAATGGAATCTGAAATAAATGAATCTAATGGCCTTGCATTGCATTCTACAAGGCATCAGCCCTGAGACCAAAATTTGGAAGGTGGCCCTGAGCAGCA-----GCTGAAGAGAA-TGGGAGGTGAGACAGGAAAGAGGAGGTGGCACAGGGCGTCTGGGAGCCGGGTCCCTCATGGGCAGCTGGGCCCGTGCTCACTGTGGGTGTTGGTGCGTTCTTTCACCAGCCCACGCTCCACAGGTTCAGGAGAGTCAATTCCGGGCA
i calJac3.chr2                 C 0 C 0
e mm10.chr13                    46099921 2341 - 120421639 I
e canFam3.chr34                 30188831 1339 -  42124431 I

a score=439719.000000
s hg38.chr3_KI270935v1_alt         60246 372 +    197351 CCCCTGGC-CTGCTCCAGGACATGCTGCTGCCACCAGAGAAAGCCCCTAGGCAGCGTCCCGGGTGCTGGTGGTGTCAGAATCGAGTTTGAGTCTGAGGAGTGACCTGGGGCTGGCTGGGCTAGGCAGCATCACGGGGTTCTGCagcccaactgcacatcaggctggtgacagtcac----gcagcctattacttcatgtgtcatcagaggatcgctagaacacagcacttc-aagtgtgcagatttagtgagccatagtctaaagacaaatagagccactg---aatcctaaatttcaatcaatcatctc--cgttactcgtcttataggtattaatcctttgaaattatgtggggtgggagttaaagcaaataactaattat
s panTro4.chr3_GL389630_random     24939 372 +    103936 CCCCTGGC-CTGCTCCAGGACGTGCTTCTGCCACCAGGGAAAGCCCCTAGGCAGCGTCCCGGGTGCTGATGGTGTCAGAATCGAGTTTGAGTCTGAGGAGTGACCTGGGGCTGGCTGGGCTAGGCAGCATCACAGGGTTCTGCagcccaactgcacatcaggctggtgacagtcac----gcagcctattacttcatgtgtcgtcagagcatcgctagaacacagcacttc-aagtgtgcagatttagtgagtcatagtctaaagacaaatagagccactg---aatcctaaatttcaatcaatcatctc--ccttactcgtcttattggtattaatcctttgaaattatgtggggtgggagttaaagctaataactaattat
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199706287 370 + 202140232 CCCCTGGC-CTGCTCCAGGATGTGCTCCTGCCACCGGAG-AAGCCCCTAGGCAGTGTCCCAGGTGCTGGTGGTGTCAGAATCGAGTTTGAGTCTGAGGAGTGACATGGGGCTGGCTGGGCTAGGCAGCATCACGGGTTTCTGCAGCCCAACTGCACATCAGCCTGGTGACAGTCAG----GCAGCCTATTATTTCATGTGTTGTCAGAGCATTGCTACAACACAGCACTTC-AAGTGTGCAGATTTAGTGAGCCATAGTCTAAAGACAAATAGAGCCACTA---AATCCTAAATTTCAATCAGTCATCT---TGTTACTTGTCTTATTGGTATTAATCCTTTGAAATTATGTGGGGTGGGAGTTAAAGCTAATAACTAATTAT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120805713 370 + 123690457 CCCCCGGC-CTGCTCCAGGACGTGCTCCTGCCACCAGAGAAAGCCCCTAGGCAGCGTCCTGGGTGCTGGTGGTGTCAGGATCGAGTTTGAGTCTGAGGAGTGACCTGGGGCTGGCTGGGCTAGGCAGCATCATGGGGTTCTGCAGCCCAGCTGCACATCAGGCTGGTGACAGTCAC----GCCACCTA----TTCATGTGTCATCAGAGCATCGCtagaacacagcacttc-aagtgtgcagatttagtgagccatagtctaaagacaaatagagccacta---aatcctaaatttcaatcaatcatctccttgttacttgtcttattggaattaatcctttgaaattatgtggggtgggagttaaagctaataactaattat
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     25939 363 + 180491593 CCCCCAGC-CTACTCCAGGATGTACTCCTGCCACCAGAGAAAGCTCCTAGGCAGCGTCCCGGGTGCTTGTGGTGTCAGAATCCAGTTGGAATCTGATGAGTGACCGGGGGCTGGCTGGGCTAGGCAGCATCATGGGTTTCCGCAGCCCAAGTGCACATCAGGCTGGTGACAGTCAC----ACAGCCTA----TTCGTGTGTCGTCAGAACATCGCtagaacacagcacttc-aagtgtgcagatttagtgagccatagtctaaagacaaatagagccactg--aaatcctaaatttcaatcaat--------cattacttgtcttattggtattaatcctttgaaattatgtggggtgggagttaaagctaataactaattat
i rheMac3.chr6                 C 0 C 0
s calJac3.chr2                    169455 313 - 204313951 C----------------------ACTCCTGCCAGCAGAGAAAGC-CCTAGGTAGCATCCCGGGTGCT-GTGGCGTCAGAATCCAGTTTGAGTCTGAGGAGTGCCCTGGCACTGGCTGGGCCGGGCAGCACCACGGGTTTCTGCAGCCCAGCTGCACAGGAGGCTGCTGACAGTCAC----GCAGCCTGTGATTTCATCT----------------CAGGACACAGCACTTC-AAGTGTGCAAATTCAGT-----------------------GAGCCACTG--AAATCCTAAATTTGAATCCATCATCTCACTGTTACTTGTCTTATTGGTATTAACCCTTTGAACTTACGTGTGGTGGGAGTTGACGCTAATAACTAATTAT
i calJac3.chr2                 C 0 C 0
s canFam3.chr34                 30190170 347 -  42124431 CTCCTGGCTCTACTC-------TACCACTACCACCAGAGAGAGACCCTGAGCAGAATCACAGGTGCT--TGGGGCAAGAA---GGTACAGGTCTGGTGAGTG-CTGGGGGAGTTCCAGACCATGCAGCATC--GAGTGTCTGCaacccagctgcagatcaaa-tggtgactgtcacaagaggagagtgtcatttcaagtggcat-----------tagaacatagaacttctgagtttacagtttcagtaaac-----tttaaggataaatgaaaccactaagaaagcctatgtttc-atcagcagtcttactgttactagggatattggtgttcatactttgaaattgtgt--agtgtaagttaaagctagtaa-taagtat
i canFam3.chr34                I 1339 I 59
e mm10.chr13                    46099921 2341 - 120421639 I

a score=34062.000000
s hg38.chr3_KI270935v1_alt         60618 29 +    197351 gttaatgctaaaactaagatttttctggc
s panTro4.chr3_GL389630_random     25311 29 +    103936 gttaatgctaaaatgaagatatttctggc
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199706657 29 + 202140232 GTTAATGCTAAAACTAAGATTTTTCTggc
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120806083 29 + 123690457 gttaatgctaaaactaagatttttctggc
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr6                     26302 27 + 180491593 gttaatgCTAAAAC--AGATTTTTCTggc
i rheMac3.chr6                 C 0 I 2536
s calJac3.chr2                    169768 29 - 204313951 GTTAATGCTAAAAGTAAGATTTTTCTggc
i calJac3.chr2                 C 0 C 0
e mm10.chr13                    46099921 2341 - 120421639 I
e canFam3.chr34                 30190517 59 -  42124431 I

a score=4331.000000
s hg38.chr3_KI270935v1_alt         60647 10 +    197351 aagggaaaat
s panTro4.chr3_GL389630_random     25340 10 +    103936 caggtatggt
i panTro4.chr3_GL389630_random C 0 I 13
s ponAbe2.chr3                 199706686 10 + 202140232 caggtatggt
i ponAbe2.chr3                 C 0 I 8
s nomLeu3.chr11                120806112 10 + 123690457 caggtgcggt
i nomLeu3.chr11                C 0 I 1
s calJac3.chr2                    169797 10 - 204313951 caggagtggt
i calJac3.chr2                 C 0 I 8
e rheMac3.chr6                     26329 2536 + 180491593 I
e mm10.chr13                    46099921 2341 - 120421639 I
e canFam3.chr34                 30190517 59 -  42124431 I

a score=-1191.000000
s hg38.chr3_KI270935v1_alt         60657 7 +    197351 cctccca
s ponAbe2.chr3                 199706704 5 + 202140232 cctgc--
i ponAbe2.chr3                 I 8 C 0
s nomLeu3.chr11                120806123 7 + 123690457 gctcaca
i nomLeu3.chr11                I 1 I 5
s calJac3.chr2                    169815 5 - 204313951 cctgt--
i calJac3.chr2                 I 8 C 0
e rheMac3.chr6                     26329 2536 + 180491593 I
e mm10.chr13                    46099921 2341 - 120421639 I
e canFam3.chr34                 30190517 59 -  42124431 I
e panTro4.chr3_GL389630_random     25350 13 +    103936 I

a score=73182.000000
s hg38.chr3_KI270935v1_alt         60664 92 +    197351 agtcccagcac-tttgggaggccgaggtgggcagatgacctgaggtcaggagtttgagaccagcctggccaacatggtgaaacgcc-atctcta
s panTro4.chr3_GL389630_random     25363 92 +    103936 aatcccagcac-tttgggaggccgaggcgggcagatgacctgacgtcaggagtttgagaccagcctggccaacatggtgaaacccc-atctcta
i panTro4.chr3_GL389630_random I 13 C 0
s ponAbe2.chr3                 199706709 92 + 202140232 aatcccagcac-tttgggaggccgaggcaggcagatcacctgaggccaggagtttgagaccagcctggccaacatggtgaaacccc-atctcta
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120806135 92 + 123690457 aatcccagcac-tttgggaggccgaggtgggcagatcacctgaggccaggagttcgagaccagcctggccagcatggtgaaaccct-atctcta
i nomLeu3.chr11                I 5 C 0
s calJac3.chr2                    169820 94 - 204313951 aatcccagcacttttgggaggctgaggcgggcaggtcacctgaggtcagcagtttgagaccgccgtggccaacatggtgaaacccctgtctcta
i calJac3.chr2                 C 0 C 0
e rheMac3.chr6                     26329 2536 + 180491593 I
e mm10.chr13                    46099921 2341 - 120421639 I
e canFam3.chr34                 30190517 59 -  42124431 I

a score=101484.000000
s hg38.chr3_KI270935v1_alt         60756 180 +    197351 ct-aaaattgaaaaatta-gctgggcatggtggcaggtgcctgtaatcccagctattggggaggctgaagcaggagaatcgcttga-aacaggaggcagagattgcagtgagccgagattgtgccactgcactccagcctgggcaacaggaacaaaactctatctcaaaaaataaaacaagat
s panTro4.chr3_GL389630_random     25455 180 +    103936 ct-aaaattgaaaaatta-gctgggcatggtggcaggtgcctgtaatcccagctgttggggaggctgaagcaggagaatcgcttta-accaggaggcagagattgcagtgagccgagattgtgccactgcactccagcctgggcaacaggaacaaaactctatctcaaaaaataaaacaagat
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199706801 180 + 202140232 ct-aaaattcaaaaatta-gctgggcatggtggcaggtgcctgtaatcccagctattcaggaggctgaagcaggagaatcacttga-aacaggaggtggagattgcagtgagctgagattgtgccatggcactccagcctgggcaacaagaacaaaactctatctcaaagaataaaacaaGAT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120806227 180 + 123690457 ct-aaaattccaaaatta-gctgggcatggtggtaggtgcctgtaatcccagctgtttgggaggctgaggcaggagaatcgcttga-accaggaggcagagattgcagtgagccgagactgtgccacggcactccagcctgggcaacaggaacaaaactctacctcaaaaaataaaaaaagat
i nomLeu3.chr11                C 0 C 0
s calJac3.chr2                    169914 150 - 204313951 ctaaaaatacaaaaattaggccaggcgcagtggctcacacctgtaatcccagcacattgggaagccaaagcagtag-atcacctgaggtcaggagttcaaga-------------------------------ccagcctgagcaatatgga-gaaactctgtctctactaaaaatacaaaat
i calJac3.chr2                 C 0 C 0
s canFam3.chr34                 30190576 123 -  42124431 tt-gagattgagaaatca------------------------------ctag---ttggaggggcagagggagagg--------ga------gaagcagactctccaccaagcagggaacccaacgcagggctcaatcccggg------------acccctatatcatgacctgagccaaggc
i canFam3.chr34                I 59 I 73
e rheMac3.chr6                     26329 2536 + 180491593 I
e mm10.chr13                    46099921 2341 - 120421639 I

a score=910.000000
s hg38.chr3_KI270935v1_alt         60936 1 +    197351 t
s panTro4.chr3_GL389630_random     25635 1 +    103936 t
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199706981 1 + 202140232 T
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120806407 1 + 123690457 t
i nomLeu3.chr11                C 0 C 0
s calJac3.chr2                    170064 1 - 204313951 t
i calJac3.chr2                 C 0 I 588
e rheMac3.chr6                     26329 2536 + 180491593 I
e mm10.chr13                    46099921 2341 - 120421639 I
e canFam3.chr34                 30190699 73 -  42124431 I

a score=40022.000000
s hg38.chr3_KI270935v1_alt         60937 79 +    197351 tttctgagaaaaaggtgtaaaaccgtatactaaatttgaaatagaaatataagcgtgaactcatttgttgttcttttac
s panTro4.chr3_GL389630_random     25636 79 +    103936 tttctttgaaaaaggtgtaaaaccatatactaaatttgaaatacaaatataagcgtgaactcatttgttgttcttttac
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199706982 79 + 202140232 TTTCTGAGAAAAAGGTGTAAAACCATATACTAAATTTGAAATAGAAATATAAGCATGAACTCATTTGTTGTTCTTTTAT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120806408 79 + 123690457 tttctgagaaaaaggtgtaaaaccatatactaaatttgaaatagaaatataagcgtgaactcatttgttgttcttttca
i nomLeu3.chr11                C 0 C 0
e rheMac3.chr6                     26329 2536 + 180491593 I
e mm10.chr13                    46099921 2341 - 120421639 I
e canFam3.chr34                 30190699 73 -  42124431 I
e calJac3.chr2                    170065 588 - 204313951 I

a score=168014.000000
s hg38.chr3_KI270935v1_alt         61016 255 +    197351 cgtagacacattttctacctctgccccagtagcagtagacacatcaagcacctagaaagtgg-------------------tctct-------------------aatacatgaaaaccatga--------attcatagtggtggtttcaaagccaa----a-accaaacaaacacatgtaattggtcactcttggaggtacctagggcactaactcctaacactgggaatggacacttgaaggaagat----cagtaattatcctgtcttttctctacaaattgcaattcagggaaaccttgttgatta
s panTro4.chr3_GL389630_random     25715 259 +    103936 cgtatacacattttctacctctgcccCAGTAGCAGTAGACACATCAAGCACCTAGAAAGTGG-------------------TCTGT-------------------AATACATGAAAACCGTGA--------ATTGATAGTGATGGTTCCAAAGCCGAAACCA-ACCAACCAAACACATGTAattggtcactcttggaggtacacagggcactaactcctaacactgggaatggacacttgaaggaagat----cagcaattatcctgtcttttctctacaaactgcaattcagggaaaccttgttgatta
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199707061 259 + 202140232 CGTATACACATTTTCTGCCTCTGCCCCAGTAGCAGTAGACACATCAAGCACCTAGAAAGTGG-------------------TCTCT-------------------AATACATGAAAACCATGA--------ATTCATAGTGATGGTTTCAAAGCCCAAACCA-ACCAaacaaacacatgtaattggtcactcttggaggtacccagggcactaactcctaacactgggaatggacacttgaaggaagat----cagcgattatcctgccttgtttctacaaattgcgattcagggaaaccttgttgatta
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120806487 259 + 123690457 cgtagacacatttcctagctctgccccagtagcagtagacacatcaagcacctagaaagtgg-------------------tctct-------------------aaTATATGAAAACCATGA--------ATTCATAGTGATGGTTTCAAAGCCAAAACCA-GCCAAACAAACACATGTAattggtcactcttggaggtacctagggcactaactcctaacactgggaatggatacttgaaggaagat----cagtgattatcctgccttttctctacaaattgcaattcagggaaaccttgttgatTA
i nomLeu3.chr11                C 0 I 10
s canFam3.chr34                 30190772 298 -  42124431 cacacacacacTGCCCCTCTCTGCCCCAGTAGCAGTGGGCTC--TAAGCACCCTGATTGTGGGGTCTGCTTACCACTGCCCTCTCTCCCCCATAGCCACAGATTGACTATattaaaaacattagtatgttcatttataatgatagtttaaaaactcagccaacactgagcaaaca----------atcacttttggaagtaactagggcactaactactaatactgaaaatggacaattagaggaaaatagtgaaatggttatcctgcctttaatccacaaattgccattcaggataacctagttgatta
i canFam3.chr34                I 73 C 0
e rheMac3.chr6                     26329 2536 + 180491593 I
e mm10.chr13                    46099921 2341 - 120421639 I
e calJac3.chr2                    170065 588 - 204313951 I

a score=18834.000000
s hg38.chr3_KI270935v1_alt         61271 53 +    197351 gggaaagttctttacata----agaattcctgcaagtaagtgagtaaagaatgacag
s panTro4.chr3_GL389630_random     25974 53 +    103936 gggaaagttctttacata----agaattcctgcaaataagtgagtaaagaatgacag
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199707320 53 + 202140232 gggaaagttctttataga----agaattcctgcaaataagtgagtaaagaatgacag
i ponAbe2.chr3                 C 0 C 0
s canFam3.chr34                 30191070 51 -  42124431 ggaaaagtattttatggataataaaat------agataaaggagtaaggaatgatag
i canFam3.chr34                C 0 I 90
e rheMac3.chr6                     26329 2536 + 180491593 I
e mm10.chr13                    46099921 2341 - 120421639 I
e calJac3.chr2                    170065 588 - 204313951 I
e nomLeu3.chr11                120806746 10 + 123690457 I

a score=46193.000000
s hg38.chr3_KI270935v1_alt         61324 170 +    197351 TTTAAGAATTGTCccagcctggccaacatagtgaaaccccatctctaaaaatacaaaaaattagccaggcatgatgatgggtgcctgtaatcccagctactcaggaggctgaggcaggagagttgcttgaacctgggagacggaggttgcagtgagccgagagtgcgcca
s panTro4.chr3_GL389630_random     26027 170 +    103936 TTTAAGAATTGTCccagcctggccaacatagtgaaaccccatctctaaaaatacaaaaaattagccaggcatgatggtgggtgcctgtaatcccagctactcaggaggctgaagcaggagagttgtttgaacctgggagacggaggttgcagtgagccaagagtgcgcca
i panTro4.chr3_GL389630_random C 0 I 12
s ponAbe2.chr3                 199707373 170 + 202140232 tttaagaattgtcccagcctggccaacatagtgaaaccccgtctctaaaaatacagaaaattagccaggcatgatggtgggtgcctgtaatcccagttacttgggaggctgaggcaggagagttgcttgaacctgggagacggaagttgcagtgagccgagagtgcgcca
i ponAbe2.chr3                 C 0 C 0
e rheMac3.chr6                     26329 2536 + 180491593 I
e mm10.chr13                    46099921 2341 - 120421639 I
e canFam3.chr34                 30191121  90 -  42124431 I
e calJac3.chr2                    170065 588 - 204313951 I
e nomLeu3.chr11                120806746  10 + 123690457 I

a score=9424.000000
s hg38.chr3_KI270935v1_alt         61494 112 +    197351 ctgcactccagcctgggcaacaagagtgagactctgtctc--aaaaaaaaaaaaaaagaaTTGTCAAATTGCTACCCCTAATGCCATGGTTCTCTAACCTGTGTAACAGGATCA
s ponAbe2.chr3                 199707543 114 + 202140232 ctgcactccagcctgggcaacaagagtgaaactctgtctccgaaaaaaaaaaaaaaaaaattgtcaaattgccacccctaatgCCgtggttctctaagctgtgtaacaggatca
i ponAbe2.chr3                 C 0 C 0
e rheMac3.chr6                     26329 2536 + 180491593 I
e mm10.chr13                    46099921 2341 - 120421639 I
e canFam3.chr34                 30191121  90 -  42124431 I
e calJac3.chr2                    170065 588 - 204313951 I
e nomLeu3.chr11                120806746  10 + 123690457 I
e panTro4.chr3_GL389630_random     26197  12 +    103936 I

a score=0.000000
s hg38.chr3_KI270935v1_alt         61606 108 +    197351 GCTGGAGGGACGCTACCCCAGACCTTCCAATTCAGTCCTGGGGGGACCCTAGTCCAGACCTTCCGATTCGGTCCTGGGGGGGCCCTAGTCCAGACCTTCCAATTCAGT
e rheMac3.chr6                     26329 2536 + 180491593 I
e mm10.chr13                    46099921 2341 - 120421639 I
e canFam3.chr34                 30191121  90 -  42124431 I
e calJac3.chr2                    170065 588 - 204313951 I
e ponAbe2.chr3                 199707657   0 + 202140232 C
e nomLeu3.chr11                120806746  10 + 123690457 I
e panTro4.chr3_GL389630_random     26197  12 +    103936 I

a score=13642.000000
s hg38.chr3_KI270935v1_alt         61714 182 +    197351 CCTGGGGGGACCCCACCCCAGACCTTCCGATTCAGTCCTGGGGAGACCCTACCCCAGATCTTCTGATTCAGTCCTGGGGGGACCCTCGTCCAGACCTTCCGATTCAGTCCTGGGGGGACCCCACCCCAGACCTTCCGATTCAGTCCTGGGGTACCCCACCCCAGACCTTCCGTTTTCAGTCC
s ponAbe2.chr3                 199707657 179 + 202140232 cctggagggaccctaccccagatcttccgatccagtcctgggga-accccgccctagatcttccaattcagtcctggggggacccTATCCCAGACCTTCCGATTCAGTCCTGGGGG-ACCCCACCCCAGATCTTCCGATTCAGTCCTGGGGGACCCCACCCCAGATCTTCCGATT-CAGTCC
i ponAbe2.chr3                 C 0 C 0
e rheMac3.chr6                     26329 2536 + 180491593 I
e mm10.chr13                    46099921 2341 - 120421639 I
e canFam3.chr34                 30191121  90 -  42124431 I
e calJac3.chr2                    170065 588 - 204313951 I
e nomLeu3.chr11                120806746  10 + 123690457 I
e panTro4.chr3_GL389630_random     26197  12 +    103936 I

a score=1502.000000
s hg38.chr3_KI270935v1_alt         61896 6 +    197351 TGGAGg
s ponAbe2.chr3                 199707836 6 + 202140232 TGGGGg
i ponAbe2.chr3                 C 0 C 0
s calJac3.chr2                    170653 6 - 204313951 TGGAGg
i calJac3.chr2                 I 588 C 0
e rheMac3.chr6                     26329 2536 + 180491593 I
e mm10.chr13                    46099921 2341 - 120421639 I
e canFam3.chr34                 30191121 90 -  42124431 I
e nomLeu3.chr11                120806746 10 + 123690457 I
e panTro4.chr3_GL389630_random     26197 12 +    103936 I

a score=81090.000000
s hg38.chr3_KI270935v1_alt         61902 266 +    197351 gaccctaccccagatcttccgattca----gtcct--ggttcggtctgagaatttgcatttctaacatgtccaggGAACACAGTTTGAAAACCTCCACGGCTAACATGTAATGGGATGACATGGTCCAATAAATGAAG-----------GAAAAATAACAGG------------TGGCAACCTCAGGCAGCTTCATCCCAACCAGTAA--GAAAGTAAAT-------CCTTTTGTAAACTAAGAGGAAGTATTAATATGGGCGTTTGAGCAAACATTTAAGTGTTAGGACAAAGAATTAAAAAC
s ponAbe2.chr3                 199707842 266 + 202140232 gaccctacctcagatcttccaatgca----gtcct--ggttcggtctgagaatttgcatttctaacatgtccaggGACCACAGTTTGAAAACCTCCATGGCAGACATATAATGGGATGATATGGTCCAATAAATGAAG-----------GAAAAATAACAGG------------TGGCAACCTCAGGCAGCTTCATCCCAACCAGTAA--GAAAGTAAAT-------CCTTTTGTAAACTAAGAGGAAGTATTAATATGGGCGTTTGAGCAAACATTTAAGTGTTAGGACAAAGAATTAAAAAC
i ponAbe2.chr3                 C 0 C 0
s calJac3.chr2                    170659 281 - 204313951 gaccctaccccagaacttcca--tca----gtcct--ggttaggcctgagaattggcatttctaacatgcccaggGACCACAGTTTGGAAACCTCTGTGGCAGACATGTAATGGGATGACACGGTCCGATAAACGGGG-----------GAACAACAACAGGTGGAGA-CCCCCTGGCAACCTCAGGAAGCTTCATCCCAGCCAGTAA--GAAAGTAAATCCCCAAGCCTTCTGAAAACTAAGAGT-AGTATTAACACGGGTGTTTGAGCAAACATTTAAGTGTTAGGACAAAGAATTAAAAGC
i calJac3.chr2                 C 0 I 294
s canFam3.chr34                 30191211 286 -  42124431 gaccccatcccaggacttctggttcagcaggtcctggggttggtcctgagaatctgcatgtgtagtatgttcAGGGCCCACCCTTTGAAAACC----------ACCTGT-TTGGGGTGATGTGGT-CAACAAACATGGAGATGATTTTCAGAAGATAACAGGTGGAGAGATGACTGACAACTTCAGAC--CTCCATGCTAACCAGTAGATGAAACAGCGTGCCAAAGAATATTGCAG---AAGTGGAAGTATAAATATGGGCATCTAAAC-ATCATTTAAGTGTTAGGACAATGAATGAAAAGC
i canFam3.chr34                I 90 C 0
e rheMac3.chr6                     26329 2536 + 180491593 I
e mm10.chr13                    46099921 2341 - 120421639 I
e nomLeu3.chr11                120806746  10 + 123690457 I
e panTro4.chr3_GL389630_random     26197  12 +    103936 I

a score=99364.000000
s hg38.chr3_KI270935v1_alt         62168 412 +    197351 TAGCACAGGCA--CCCCTGAAGCATGATAGGATGGCAACAGAAGGGCTGATTTAGTTTCCAAGAAATAACTGACAGGCAGTGT---TGTGCGTGTGTCTACTACTTAGGAACCCAAAACAAACCTTCAGACCGTTTTCATGAGTA--CTGAGACCAAGAAAACCACTGGGCAGTGGGTGGTCTGGAAATGTAAATGTTGATGG---------------------------------------------TACTCCAGTAA----TGAG-------------------------------------------------------------------TCATGGAACAATGTTTCA----------------------------------------------------TATTGAAAATGTTTTTGTA-AATGTGGGTTTCAGGGTTTCAAAGTGAACCCATATGTGTTAGGAGAAAGGACACACCAAAGAAG------TAAAATAATTGGGTCAATATAAAAAG----TAGAATATTGCCCAGAGAGAAGATGTGGATAATTCCTAATACGGATCAAAGGCACCAAA--AAGGTG----------------AGCTGTGAG
s ponAbe2.chr3                 199708108 418 + 202140232 TAGCACAGGCA--CCCCTGAAGCATGATAGGATGGCAACAGAAGGGCTGATTTAGTTTCCGAGAAATAACTGACAGGCAGTGT-TGTGTGTGTGTGTCTACTACTTAGGAACCCAAAACAAACCTTCAGACCGTTTTCATGAGTA--CTGAGACCAAGAAAACCACTGGGCAGTGGGTGTTCTCGAAATGTAAATGTTGATGG---------------------------------------------TACTCCACTAA----TGAG-------------------------------------------------------------------TCATGGAATGGTGTTTCA----------------------------------------------------TATTGAAAATGTTTTTGTA-AATGTGGGTTTCAAGGTTTCAAAGTGAACCCGTATGTGTTAGGAGAAAGGACACACCGAAGAAG------TAAAATAATTGGGTCAATATAAAAAGAAAATAGAATGTTGCCCAGAGAGAAGATTTGGATAATTCCTAACATGGATCAAAGACACCAAA--AAGGTG----------------AGCTGTGAG
i ponAbe2.chr3                 C 0 I 108
s calJac3.chr2                    171234 407 - 204313951 TAGCACAGGCA--CCCCTGAAGTATGATAGGGTGGCAACGGAAGGGCCAATC-----------GAATAACTGCTGGGCAGCTTCCTTGTGTGTATGTCTACTA---AGGAATCAGAAACAAACCCTCAGACAGTTCTCATGAGTA--CTGAGACCAAGGAAGCCACTGGGCAGTGGGTGGTCT-GAAAAGTAAATTTTTATAG---------------------------------------------TGCTCCACTAATTACTGAG-------------------------------------------------------------------TCATAGAACGATGTTTCA----------------------------------------------------TATTGAAAATG-TTTTGTA-AATGTGGGTTTCAAGGTTTCAAAATGAACCCATGCTTGTTCAGAGAAAGGACAAACCAAAGAAG------TAAAATCATTGGGTCAATATAAAAAGAACGTAGAATGTTGCCCGGAGAGAAGGCGTGGATAATTCCTAACACGGATCAAAGGCAGGAAA--AAGGTG----------------AGCTGTGTC
i calJac3.chr2                 I 294 C 0
s canFam3.chr34                 30191497 585 -  42124431 TGGCAAAGGCAGGTACCTGAAGCATAATTAGATG---ACAGAAGGGCTGATT-GGTTTCAAAGAAGTAACTG--AGGCCCTGG---CTTCCTTATATCTGCTACTTTTCAACCAAAAGTCAACCTGTGGACCATTTTTATGAACATTCTGAAACCAAGAAAATCACGGG--AGTAGG---TCTGGAAATACAAGTTCCTATGGGACAGAATATTTCATACTGGTAATATGGGTttttttttgtttgtttgttttattca----tgagagacaggcagagatgtaggcagagtgagaagcaggctccatgcagagaccccaatgtgggactctattccgggattgctggatcatgccctgagctgaaggcagaagctcaactgctgagccacccaggcatctcTGTACTGGAAATA-TTTTGTACAATGTATATTCAAGG--TTCTAAGAGAACCCACA--TGTTAGGGGAATTTACAGAGCAGAGAAATTTTTTTTAAATG--TGCATCAAGGTAAAAAAC---TAGAATACTATCCAGAGAGA---TGTGGTTAATTTCTAATATGGATCAAAAGCAAAAAATTAAGATACAGTACAGTACTCTTCAActgtcca
i canFam3.chr34                C 0 C 0
e rheMac3.chr6                     26329 2536 + 180491593 I
e mm10.chr13                    46099921 2341 - 120421639 I
e nomLeu3.chr11                120806746  10 + 123690457 I
e panTro4.chr3_GL389630_random     26197  12 +    103936 I

a score=-750.000000
s hg38.chr3_KI270935v1_alt         62580 27 +    197351 ----------------------------TAAGATATTCAGACCTGCAC-----------------------------------catccca
s ponAbe2.chr3                 199708634 27 + 202140232 ----------------------------TAAGATATTCAGACCTGCAC-----------------------------------CATCCCG
i ponAbe2.chr3                 I 108 C 0
s calJac3.chr2                    171641 20 - 204313951 ----------------------------TGAGATACTCAGACCTGCAC------------------------------------------
i calJac3.chr2                 C 0 C 0
s canFam3.chr34                 30192082 90 -  42124431 tagcattagccatagccacatagctatttaagctcaccaaaattacataaaacttaaaattacattccctagtccccttgatccatttca
i canFam3.chr34                C 0 C 0
e rheMac3.chr6                     26329 2536 + 180491593 I
e mm10.chr13                    46099921 2341 - 120421639 I
e nomLeu3.chr11                120806746 10 + 123690457 I
e panTro4.chr3_GL389630_random     26197 12 +    103936 I

a score=37716.000000
s hg38.chr3_KI270935v1_alt         62607 91 +    197351 ----agcagtagccaca-gtggcaagtagcctcctcactggacagtgcagctacggaatgatgccatcaccggaaagttccatcagccagcaccgA
s ponAbe2.chr3                 199708661 91 + 202140232 ----AGcagtagccaca-gtggcaagtagcctcctcactggacagtgcagctacggaatgatgccatcaccggaaagttccatcagccagcactgA
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr6                     28865 91 + 180491593 ----AGcagtagacaca-gtggcaagtagcctccgcactggacagtgcagctatggaacgatgctatcactggaaagttccatcagccagcactgA
i rheMac3.chr6                 I 2536 C 0
s calJac3.chr2                    171661 58 - 204313951 --------------------------------------TGGGCTGTGCAGCTGCGGAACGGTGGCATCGCCGGGAAGTTCCATCGGCCAGCACTGA
i calJac3.chr2                 C 0 C 0
s canFam3.chr34                 30192172 90 -  42124431 agtggtcagtagctacatgtggcaagtggctgccacactggacagcagagcagtcggattgttgca------gaaagttctgttCACCAACAGCAG
i canFam3.chr34                C 0 C 0
e mm10.chr13                    46099921 2341 - 120421639 I
e nomLeu3.chr11                120806746 10 + 123690457 I
e panTro4.chr3_GL389630_random     26197 12 +    103936 I

a score=221195.000000
s hg38.chr3_KI270935v1_alt         62698 513 +    197351 TGCAGACCTTTGC-AACTGCCCCTCAC------GCTGGACAGCACCTGTTTGATAGATTGTCCACTACGCAGTGAAAAGCCTGGGTGAAAAGCGGTATTTGGTAGAAGAGCAAAAAGGGGAAAAAAATTAAAAGTAGTAGGTCATTGTCCGCCAAACTGAATTCTGGCAGAAGAATGTTGGAAGCAAGATGGGAGCCACAGGAGAAAGTATCCTTGTCCCAAGACAGGAGGGGGTG--CCAGGCATGGTTGGCTCTGT-GCCTGGAATTCTATGGCCGGAATCTGGAAAAAGGAAAAGTGACTGGAAAAGGAAAGATTCTGTGTGCTTATG-TCAAGATGCA-GCCGTCCGTGATCC---TGAGAAAATAAGTGAA-----------CAAAGTGGCTTTGGAGGGA-CGCT---GT-----TGGATACACAAACAGATACA---ATGTGCACTTGC-----TATGCTTGTTCACACAAAGGACAGGATGGTCat------------------ctgttcattgaacaactacctgtcgagggcctatat-gtgccaaagacatcagatg--aacaaga
s ponAbe2.chr3                 199708752 513 + 202140232 TGCAGACCTTTCA-AATGCCCCCTCAC------ACTGAACAGCACCTATTTGATAAATTGTCCACTACTCAGTGAAAAACCTGTGTTAAAAGCGGTATTTGGTAGAAGAGCAAAAAGGGGAAAAAAATTAAAAGTAGTAGGTCATTGTCCTCCAAACTGAATTCTGGCAGAAGAATGTTGGAAGGAAGATGGGAGCCACTGGAGAAAGTATCCTTGTCCCAAGACAGGAGGGGGTG--CCAGGCGTGGTTGGCTCTGT-CCCTGGAATTCTATGGCCGGAATCTGGAAAAAGGAAAAGTGACTGGAAAAGGAAAGATTCTGTGTGCAAATG-TCACGATGCA-GCCATCAGTGATGC---TGAGAAAATAAGTGAA-----------CAAAGTGGCTTGGGAGGGA-TGCT---GT-----TGGATACATGTGCAGATACA---ATGTGCACTTGC-----TATGCTTGTTCACACAAAGGACAGGATGGTCat------------------ctgttcattgaacaactacttgtcgagggcctgtat-gtgccaaagacATCAGATG--CACAAGA
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr6                     28956 514 + 180491593 CGCAGACCTTTGCAAATGCCCCCTCAC------ACCGAACAGCACCTATCTGATAGATTGTCCACTACTCAGTGAAAAGCCTGTGTTAAAAGCGGTATTTGGTAGAAGAGCAAAACGGG--AAAAAATTAAAAGTGGCAGGTCATTGTCTTCCATACTGAATTCTGGCAGAAGAATGTTGCAAGGAAGACGGGAGCCACAGGAGAAAGTATCCTTGTCCCAAGACAGGAGGGGGTG--CCAGGCACGGTTGGCTCTGT-CCCTGGAATTCTATGGCCGGAATCTGGAAAAAGGAAAAGTGACTGGAAAAGGAAAGATTCTGTGTGCAAATG-TCATGATGCA-GCCGTCAGTAATCC---TGAGAAAATAAGTGAA----------CCAAAGTGGCTTTGGAGAGA-TGCT---GC-----TGGATACATGTACAGACACA---ATGTACACTTGCA----TATGCTTGTTCACATGAAGGACAGGATGGTCat------------------ccgctcattcaacaaatacttgtcgagggcctatat-gtgccaaagacATCAGATG--CACAAGA
i rheMac3.chr6                 C 0 C 0
s calJac3.chr2                    171719 500 - 204313951 TGTGGCCTTTGCC-CACGCTCTCTCAC------ACTGAACAGCACCTATC----AGAGTGTCCACTACTCAGTGAAACGCCTGTGTGAAAAGCGGTATTTGGTAGAAGAGTAAAAAAGAGGGGGAG---AAAAAGGGTAGGTCATTCTCTTCCATATTGAATTCTGGCAGAACAATGTTGGAAGGAACACGGGAGCCACAGGAGAAAGTA-----GTCCCAGGACAGAAGGGGGTG--CCAGGCACGGTTGGCTCTGT-CCCTGGAATTCCATGGCTGGAATCTGGAAAAAGGGAAAGTGACTGAAAAAGGAAAGATTCTGTGTGCAAATG-TCACGATGCA-CCGGTCAGTGATCC---TGAAAAAATAACTGAA----------CCCAGGTGGCTTCGGAGGGG--GCT---GT-----TGGATGCATGTGC-----CATGTATGTGGACTTGTG----TATGCTCGTTTACACAAAGGACA-GATGGTCAT------------------CTGTTCATC--ACAACACTTTGTCGGAGGCTCTTATGGTGCTAAAGACTTCAGATTGCAACAAGA
i calJac3.chr2                 C 0 I 918
s mm10.chr13                    46102262 363 - 120421639 TGTGGACGTTTGC---TGCTCCCTCAC------ACCATCTAGCGCACATTTGACACACTCATCAATACTCACTAAGAAGCTTGAGTTACA-------------------------------------TAAAGAGTGATAGG---TTCTCTTTAGTATTAAATTCAAAC--CAGAATTTT---------ATTGGAGCCA--AGTGACAGTTTTAACA-CTAGAGAAAGAAGGGTGTG--CTGAGCATATTTGGCT--------------------------ATCAGGAA------AAGTTAACTGAAAATTT--GTCTTCCATGTGCAAATGTTCAGGGTGCATTCCACCAGT-------------AAGCAAAGGAA----------CCAATGTGGCTT-AGAGGTA-CACTTAAAT-----TAGATATGTATAAGAACACG--------------------CATGCGTCTGTACACATACAAAAAGAT------------------------------------------------------CTTTAT---GCAAAAGATAT--------GACAATG
i mm10.chr13                   I 2341 C 0
s canFam3.chr34                 30192262 458 -  42124431 --------------TATACACAGTCACTAGTGTATTAAACAGCACCTAT--GATAAATTGGCCACTACCTAATATAAAACCTGAGTTAAA-------------------------------------TAAAAAGTGGTCAGTCATTCTCTTTCATACTGAATTCTGAC-----AATATTGGTTGGAA--------------------------------------AGGAGGCGGAGGCCTGGGCACAGCTGGCTCCATCCCCTAGAATTCTGC-ACCAGAGTCTGTAAAAGGG--AAGTGACAGAGAAGGT----CTCTAGCGTGTAAATG-TCACAGTACAAGTCATTGGTGGTCTTGATGAGAAAATAAGGCACAAATGACAACTCAATGTGCCTTCAGAGGGAAAGCT---GTTAGGGTGGATACATACAAAGTGTGT---GTGTGTGCGTGCGCCCATGCACACATTCACACACACAAAAGAATGGACATATAACTTACTTGGTCATCCCATTTGTTTAACA------TTTGAGAGTTCACTAT-ATGCCAaagacatacgatg--aacaaga
i canFam3.chr34                C 0 C 0
e nomLeu3.chr11                120806746  10 + 123690457 I
e panTro4.chr3_GL389630_random     26197  12 +    103936 I

a score=9311.000000
s hg38.chr3_KI270935v1_alt         63211 46 +    197351 GGGTGCACTGTGGAAAGCCTCAGGAACACAAGCGCCCAGAAACATT------
s ponAbe2.chr3                 199709265 46 + 202140232 GGGTGCACTGTGGAAAGCCTCAGGAACACAAGTGCCCAGAAACATT------
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr6                     29470 35 + 180491593 GGGTGCACTGT-----------GGAACACACGCGCCCAGAAACGCT------
i rheMac3.chr6                 C 0 C 0
s mm10.chr13                    46102625 38 - 120421639 ACTTACCCATT--------TCATGCACCTCAGCTCCCAGAAAGAGC------
i mm10.chr13                   C 0 I 7
s canFam3.chr34                 30192720 50 -  42124431 gggtagactat--gaagtgttaggaatgctagcacccagaaatagccaatgt
i canFam3.chr34                C 0 C 0
e calJac3.chr2                    172219 918 - 204313951 I
e nomLeu3.chr11                120806746 10 + 123690457 I
e panTro4.chr3_GL389630_random     26197 12 +    103936 I

a score=152890.000000
s hg38.chr3_KI270935v1_alt         63257 224 +    197351 Tagaaaaattct-aaggaaaacagaaaaggcatttt-----cagattagctcataga------------aatgagaccaaaggaaagactggcccagtatttggatacattatgtgataaaccttaacacagggaggaa---agtgttatctttcaattaatttctcaact-----------------------tctggagaccttagaacagacctggctaggaggaaattgaat-ccgaggcaggtgagg-----acatagtg----gtgcctcga
s ponAbe2.chr3                 199709311 224 + 202140232 Tagaaaaattct-aaggaaaacagaaaaggcatttt-----cagattagctcagaga------------aatgagaccgaaggaaagactgacccagtatttggatacattatgtgattaaccgtaacacagggaggaa---agtgttatctttcaattaatttctcaact-----------------------tctggaaagcttagaacagacctgactaggaggaaattgaat-ctgaggcaggtgagg-----agaTAGTG----GTGCCTCAA
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr6                     29505 216 + 180491593 Tagaaaaattct-aaggaaaacagaaaaggcatttt-----caaattag-----aga------------aatgagaccacagtaaagactgacccagtatttggatccattatgtgattaaccttaacacagggaggaa---agtgttctctttcagttaatttctccact-----------------------tctggaaagcttagaacagacctggctaggaggaaacggaat-cggaggcaggtgag--------ATCGCG----GTGCCTGGA
i rheMac3.chr6                 C 0 C 0
s calJac3.chr2                    173137 223 - 204313951 Taaaaaaattct-aagggaaacagaaaaggcatttt-----caaattagctcagaga------------aattagacca-aggaaagactcacccagtatttggatacattatgtgattaacgttaacacagggaggaa---agtgatatctttcagttaatttctcaact-----------------------cctggaaagcttagaacagacctggttaggaggaaattgaat-ccggggcaggtgagg-----agaTAGTG----GTACCTCAG
i calJac3.chr2                 I 918 C 0
s mm10.chr13                    46102670 229 - 120421639 TAGAAAAGTTCTAAAGGAAAACA--------ATTTTGTGTATATAGTAGCTCAAAGAAGTAGCTCAGAGAATTAGGTTAAAGGAAAGAGTGGCCCAATATGCAGACACATGATATGATTAACATCA----TAGGAGGAC---AGGGTTATCTC---ATTTATTTCTCTa--------------------------ctggaaagcttagaacagacctggttaagaggaaactaaac-ctgagatagggcaaggagatagatggtg----gcacctggA
i mm10.chr13                   I 7 N 0
s canFam3.chr34                 30192770 220 -  42124431 ttaaaaagttct-aagggtaata--aaaggcatttt-----ccaactggccca-aca-------------------------------------------ttagatacattatgtg-ctaacgttaatgggaggaagagagcagtgttgtctttcagtttatttctctcctctcccatccaggagcaccatctacttggaaagcttagaacagacctggttaagagggaactgaatcccaagataggcgagg-----ggatagtggcaagtacattaa
i canFam3.chr34                C 0 C 0
e nomLeu3.chr11                120806746  10 + 123690457 I
e panTro4.chr3_GL389630_random     26197  12 +    103936 I

a score=110483.000000
s hg38.chr3_KI270935v1_alt         63481 230 +    197351 tgcttccagtgattgcgtcagcagaaccagGGGTGGGAGATGATCTCTCTTTTTGTTGGC-AGATGGTGGTGTCTGCTGTAGCTTTGT-CCCCT-------GGTGACGGGACT-CAGGCAGTAAC--CCCCATCATTGGCAATACCCCCACCTCTGAGAATGTGGAGAGGACTT-GTGAAGACAATGTTGTCCCAAGCAGCACAGCCCAGGTGCTG----------------------ACAGG-ATTCAGAGTTAGAGCTTTCTTA
s ponAbe2.chr3                 199709535 228 + 202140232 TGCTTCCAGTGATTGGGTCAGCAGAACAAGGGATGGGAGATGATCTCTC--TTTGTTGGC-AGATGGTGGTCTCCACTGTAGCTTTGT-CCCCT-------GGTGACGGGACT-CAGGCAGCATC--CCCCATCATTGGCAATACCCCCACCTCTGAGAATGTGGAGAGGACTT-GTGAAGACAATGTTGTCCCCAGCAGCACAGCCCAGGTGCTG----------------------ACAGG-ATTCAGAGTTAGAGCTTTCTTA
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr6                     29721 228 + 180491593 TGCTTCCAGTGATTGGGTCAGGAGAACCAGGGGTGGGAGATGGTCTCTCTTTTTGTTGGC-AGATGGTGGTCTCCGCTGTAGCTTTG--CCCCT-------GGTGACGGGACT-CAGGCAGCATC--CCCCATCAATGGCAAAACCCCCGCCTCTGAGAATGTGGAGAGCACTT-GTGAAGACAATGTTGTCCC-ACCAGCACGGCCCATGTGCTG----------------------ACAGG-ATTCAGAGCTGGAGGTTTCTTA
i rheMac3.chr6                 C 0 C 0
s calJac3.chr2                    173360 226 - 204313951 TGC-TCCAGTGATTCAGTCTGCAGAACCAGGGCTGGGAGGTGAGCTT----TTTGTTGGC-AGATGGTGGTTTCCGCTGCAGCCTCGC-CCCCT-------GGGGACAGGACT-CAGGCAGAATC--CCCCATCAGTGGCAGTACCCCCACCTTTGAGAATGTGGAGAGGACTTGGGGAAGAAAGTGTTGTCCCACACAGCACAGCCCAGGTGCCA----------------------ACAGG-ATTCAGGGCTGGAGGCTCCTTA
i calJac3.chr2                 C 0 I 420
s canFam3.chr34                 30192990 251 -  42124431 tactttaagtgattgagtctgtagaactaggcAGGGGCTAGGCTGCATCTTTCTGCTGGCGAGGAGACGGTCTCCCCTGTGGCTGCGCATCTCTGCCATGAGGCCACAGGACTCCAGGCAACACCGTCCCCACCAATGGCAGCAATTC-------------ACTGAGAGGACCC--CAAGGCTTAGGCCTGCCCTAGCAGTATGGCCCAGGTGCTGTGCCCCACCCGACCTGTTCCATGCAGACAGTTGGAGCCAGTGGCTCATTA
i canFam3.chr34                C 0 C 0
e nomLeu3.chr11                120806746  10 + 123690457 I
e panTro4.chr3_GL389630_random     26197  12 +    103936 I

a score=4437.000000
s hg38.chr3_KI270935v1_alt         63711 10 +    197351 GAGGTCAGGG
s ponAbe2.chr3                 199709763 10 + 202140232 GAGGTCAGGG
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr6                     29949 10 + 180491593 GAGGGCAGGG
i rheMac3.chr6                 C 0 C 0
s canFam3.chr34                 30193241 10 -  42124431 GAAATCAGGG
i canFam3.chr34                C 0 C 0
e calJac3.chr2                    173586 420 - 204313951 I
e nomLeu3.chr11                120806746 10 + 123690457 I
e panTro4.chr3_GL389630_random     26197 12 +    103936 I

a score=15629.000000
s hg38.chr3_KI270935v1_alt         63721 33 +    197351 TTGCGGAAGAGGCAGGGACTGCAGCTGCATAGT
s ponAbe2.chr3                 199709773 33 + 202140232 TTGCAGAAGAGGCAGGGACTGCAGCTGCATAGT
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr6                     29959 33 + 180491593 TTGCGGAAGAGGCGTGGACTGCAGCTGCATAGT
i rheMac3.chr6                 C 0 C 0
s calJac3.chr2                    174006 31 - 204313951 TTGCGGAAAAGGCAGGGACTGCAGCTGC--GGT
i calJac3.chr2                 I 420 C 0
s canFam3.chr34                 30193251 33 -  42124431 CTGAgggatccctgggtggcgcagcggtttagt
i canFam3.chr34                C 0 N 0
e nomLeu3.chr11                120806746 10 + 123690457 I
e panTro4.chr3_GL389630_random     26197 12 +    103936 I

a score=32797.000000
s hg38.chr3_KI270935v1_alt         63754 72 +    197351 TTGTATATGTATCAGGCTAGTATCTTTTGTTCTAGACTCATCCATTTGTACATTCATATGAGTATGCATGCA
s ponAbe2.chr3                 199709806 72 + 202140232 TTGTATAGGTATCAGGCCAGTATCTCTTGTTCTAGACTCATCCATTTGTACATTCATATGAGTATACATGCA
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr6                     29992 72 + 180491593 TTGTGTATATATCAGGCCAGTATCTCTTGTTCTAGACACATCCATTTGTGCATTCGTATGAGTATGCACGCA
i rheMac3.chr6                 C 0 C 0
s calJac3.chr2                    174037 72 - 204313951 TTGTGTATGTATCAGGCCAGTATTTCTTGTTCTAGACTCGCCCATTTGGACATTGACATGGGTGTGCATGCA
i calJac3.chr2                 C 0 C 0
e nomLeu3.chr11                120806746 10 + 123690457 I
e panTro4.chr3_GL389630_random     26197 12 +    103936 I

a score=2504.000000
s hg38.chr3_KI270935v1_alt         63826 14 +    197351 TGGTGTtttttctt
s ponAbe2.chr3                 199709878 14 + 202140232 GGGTGttttttctt
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr6                     30064  6 + 180491593 GGGTG--------t
i rheMac3.chr6                 C 0 C 0
s macFas5.chr2                     10318 14 + 192460366 gtgtgtctccatct
i macFas5.chr2                 N 0 C 0
s calJac3.chr2                    174109 14 - 204313951 CGGTGTTTTTCTTT
i calJac3.chr2                 C 0 N 0
e nomLeu3.chr11                120806746 10 + 123690457 I
e panTro4.chr3_GL389630_random     26197 12 +    103936 I

a score=76.000000
s hg38.chr3_KI270935v1_alt         63840 5 +    197351 tttct
s ponAbe2.chr3                 199709892 5 + 202140232 tttct
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr6                     30070 4 + 180491593 tttt-
i rheMac3.chr6                 C 0 C 0
s macFas5.chr2                     10332 4 + 192460366 tttt-
i macFas5.chr2                 C 0 C 0
e nomLeu3.chr11                120806746 10 + 123690457 I
e panTro4.chr3_GL389630_random     26197 12 +    103936 I

a score=3094.000000
s hg38.chr3_KI270935v1_alt         63845 10 +    197351 t---------tttcttttt-
s ponAbe2.chr3                 199709897 19 + 202140232 tttttctttcttttttttt-
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr6                     30074 10 + 180491593 ----------ttcttttttc
i rheMac3.chr6                 C 0 C 0
s macFas5.chr2                     10336 10 + 192460366 ----------tttttttttt
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                      9201 10 - 187378091 ----------tttttttttt
i papAnu2.chr2                 N 0 C 0
e nomLeu3.chr11                120806746 10 + 123690457 I
e panTro4.chr3_GL389630_random     26197 12 +    103936 I

a score=309106.000000
s hg38.chr3_KI270935v1_alt         63855 288 +    197351 ttttttttttttgagatggagtcttgctgtgtcacccaggctggagtgcagtggcataatcttgcttgactgcaagctccgcattccgggttcaagagattctcctgcctcagccttccgagtagctgggattacaggtgcctgccaccacacttggctaatt-tttgtatttttagtagagatgggggtttcaccatgttggccaggctggtgtcgaactcctgacctca-gtgatccacctgccttggcctcccaaagtgctgggattacaggcattagccactgcgc
s ponAbe2.chr3                 199709916 287 + 202140232 ttttttttttttgagatggagtcttgctgtgtcacccaggctggagtgcagtggcataatcttggctgactgcaagctctgcattccgggttcaagagattctcctccctcagccttcccagtagctgggattacaggtgcctgccaccacacttggctaatt-tttgtatttttagtagagac-ggggtttcaccatgttggccaggctggtctcgaactcctgacctca-gtgatccacctgccttggcctcccaaagtgctgggattacaggcgtcagccactgtac
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr6                     30084 287 + 180491593 cttttctttttggagatggagtctcgctctgtcaggtgggctggagtccagtggcgtcatcttggctcactgcaagctccgcctcccaggttcccgccattctcctgcctcggccgtccgcctagctgggattacaggtccccgccaccacgccccgctaattgttcgtagttttagtagagac-ggggtttcaccgtgttagccaggatggtctctatctcctgacctt--gtgatctgcctgcctcggcctcccaaagtgctggggttacaggcgtgagccaccgcgc
i rheMac3.chr6                 C 0 N 0
s macFas5.chr2                     10346 286 + 192460366 ttttttttttttgagacggagtctcactctgtcacccaggctggagagcagtggtgcggtcttggctcactacaacctcctcctcccgggttcaagagattctgctgcctcagcctcccgagaagctgggactacagg-cgccgccaccacacccggctaagt-tttgtatttttagtagagac-ggggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatccacccgcctcggcctccc-aagtgctgcgattacaggcgtgagccacggcgc
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                      9211 286 - 187378091 tttttttttttggagatggactctcactctgtcacccaggctggagagcagtggtgcggtctcggctcactacaacctcctcctcccgggttcaagagattctcctgcctcagcctcccgagaagctgggactacagg-cgccgccaccacacccggctaagt-tttgtatttttagtagagac-ggggtttcaccatgttggccaggctggtctcaaactcccgacctcaggtgatccacccgcctcggcctccc-aagtgctgcgattacaggtgtgagccaccgcgc
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   359878 287 -  91754291 ttttttttttttgagatggactctcactctgtcacccaggctagagagcagtggtgcgatcttggctcactacaacctcctcctcccgggttcaagagattctcctgcctcagacttccgagaagctgggattacaggcacccgccaccacacccggctaatt-tttgtatttttagtagagac-ggggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatccacccgcctcggcctccc-aagtgctgcgattacaggcgtgagccactgcgc
i chlSab2.chr15                N 0 C 0
e nomLeu3.chr11                120806746  10 + 123690457 I
e panTro4.chr3_GL389630_random     26197  12 +    103936 I

a score=9620.000000
s hg38.chr3_KI270935v1_alt         64143 7 +    197351 ccagccG
s ponAbe2.chr3                 199710203 7 + 202140232 ccagccA
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                      2120 7 - 192599291 CCAGCCA
i rheMac3.chr2                 N 0 C 0
s macFas5.chr2                     10632 7 + 192460366 ccagcca
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                      9497 7 - 187378091 ccagcca
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   360165 7 -  91754291 ccagcca
i chlSab2.chr15                C 0 C 0
e nomLeu3.chr11                120806746 10 + 123690457 I
e panTro4.chr3_GL389630_random     26197 12 +    103936 I

a score=275487.000000
s hg38.chr3_KI270935v1_alt         64150 164 +    197351 TATGTC----TCCATCTTTTTATTTCTTGCAATGTGTTGTTAAAGAAGTCAGGTGGTATGTGTACACAAGTAACGTATACTTGTTGAATATTTCTTATTTA-TCATACCCTGTCTCGTTCCAAAAGGATTTTACATGACTTATAATTTTAAtataatccgggg------------gagatg
s ponAbe2.chr3                 199710210 165 + 202140232 TATGTC----TCCATCTTTTTATTTCTTGCAATGTATTGTTAAAGAAGTCAGGTGGTATGTGTACACAAATAACGTATACTTGTTGAATATTTCttatttactcataccctgtcttgttccaaaaggattttaaatgacttataaTTTTAAtataatctgggg------------gagatg
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                      2127 177 - 192599291 TATGTc----tccatctttttgtttcttgcaatgtattgttaaagaaatcaagtagtatgtGTACACAAATAATGTTCAGTTATTGAGTATTTCTTTTTTACTCATACCCTGTCTTGTTCCAAAAGGATTTTAAATGACTTataattttaatataatccagggaggggtaagcgtgagatg
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     10639 177 + 192460366 tatgtc----tccatctttttatttcttgcaatgtattgttaaagaaatcaagtagtatgtGTACACAAATAATGTTCAGTTATTGAGTATTTCTTTTTTACTCATACCCTGTCTTGTTCCAAAAGGATTTTAAATGACTTATAATTTTAATATAATCCGGGGAGGGGTAAGCGTGAGATG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                      9504 177 - 187378091 tatgtc----tccatctttttatttcttgcaaTGTATTGTTAAAGAAATCAAGTAGTATGTGTACACAAATAATGTTCAGTTattgagtatttcttttttactcaTACCCTGTCTTGTTCCAAAAGGATTTTAAATgacttataattttaatataatccgGGGAGGGGTAAGCGTGAGATG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   360172 177 -  91754291 tatgcc----tccatctttttatttcttgcaatgtattgtaaaagaaatcaggtagtatgtGTACACAAATAACGTTCAGTTATTGAGTATTTCTTTTTTACTCATACCCTGTCTTGTTCCAAAAGGATTTTAAATGACTTATAATTTTAATGTAATCCGGGGAGGGGTAGGCGTGAGATG
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   849686 169 -  74750902 tatgtctctgtccgtctttttatttCTTGCAATGTGTCGTTAAAGAAATCAGGTGGTGTGTGTACGCAAATAACATGCAATTATTGAGTACTTCttgtttactcgtaccctgtcttgtgccaaaaagatttaaaatgacttatgatattaatataatctggga------------ggggtg
i calJac3.chr17                N 0 C 0
e nomLeu3.chr11                120806746  10 + 123690457 I
e panTro4.chr3_GL389630_random     26197  12 +    103936 I

a score=700512.000000
s hg38.chr3_KI270935v1_alt         64314 337 +    197351 ggcagattcagctctgggaggccagcagaatggcttttaggtcctccttggattcagaaaatacttcttgaaagatatttgaggtaaatcttacaggattagaggttagccagatgaaaagaAATCAAGAGAGGAGAGAGGAGCCCCCACAAAGGACTGACCCAGGGCAAT---AAC--GGGGAAAGAACTTGGAGGTACAGAGGCAGACCTTGGTGTTTCCCAGGGTGTGGGACGTTGGGGGTAGTAAGGCTGGAGTGGGTAGAGGAAAGGGCTAGGGTGACA-CCACGGGGTATTAGGTGGAACTGagggaaacagaaataggagcagagaaaagggaatg
s panTro4.chr3_GL389630_random     26209 339 +    103936 ggcagattcagctctggcaggccagcagaatggcttttaggtcctccttggattcagaaaatacttcttgaaagatatttgaggtaaatcttacaggattagaggttagccagatgaaaagaaatcaagagaggagagaggagcccccacaaaggactgacacagggcaat---aacagggggaaagaacttggaggtacagaggcagaccttggtgtttcccagggtgtgggacgttgcgggtagtaaggctggagtgggtagaggaaagggctagggtgaca-ccacggggtattaggTGGAACTGAGGGAAACAGAAATAGGACCAGAGAAAAGGGAATG
i panTro4.chr3_GL389630_random I 12 C 0
s ponAbe2.chr3                 199710375 342 + 202140232 ggcagattcagctctgggaagccagcagaatggcttttaggtcctccttggattcagaaaatacttcctgaaagatatttgagctaaatcttacaggactagaggttagccagatgaaaagaaatcaagagaggagagaggagctcccacaaagggctgacccagggcaatgagaacagggggaaagagcttggaggtacagaggcagaccttggtgtttcccagggtgtgggacgttgggggtagtaaggctggagcgggtagaggaaagggctagggtgaca-ccacaggatattaggtggaactgagggaaacagaaataagaGCAGAGAAAAGGGAATG
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                      2304 336 - 192599291 -ggagattcagctctgggaggccagcagaatggcttttaggtcctccttggattcagaaaatacttctcgaaagagattcgagctaaatcttacaggattagaggttagccggatgataataaatcaagagggaaaagaggagctcctgcaaagggctgacccagggcagtgagaaca-ggggaaagagctcggaggta--gaggcagaatctggtgtttcctggggtgcgggacgttaggggtagtaaggctggagtgggtagaggaaaggGCTAGGGTGACA-CCCCGGGGTATTAGGCGGAACTGAGGGAAAC--AAATAGGAGCAGGGAAAAGGGAACG
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     10816 336 + 192460366 -GGAGATTCAgctctgggaggccagcagaatggcttttaggtcttccttggattcagaaaatacttctcgaaagagattcgagctaaatcttacaggattagaggttagccggatgataataaatcaagaggggaaagaggagctcccgcaaagggctgacccagggcagtgagaaca-gggaaaagagctcggaggta--gaggcagaatctggtgtttcctggggtgcaggacgttaggggtagtaaggctggagtgggtagaggaaaggGCTAGGGTGACA-CCCCGGGGTATTAGGCGGAACTGAGGGAAAC--AAATAGGAGCAGGGAAAAGGGAACG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                      9681 336 - 187378091 -GGAGATTCAGCTCTGGGAGGCCAGCAGAATGGCTTTTAGGTCCTCCTTGGATTCAGAAAATACTTCTCGAAAGAGATTCGAGCTAGATCTTACAGGATTAGAGGTTAGCCGGATGACAATAAAtcaagagaggaaagaggagctCCCGCAAAGGGCTGACCCAGGGCAGTGAGAACA-GGGGAAAGAGCTCGGAGGTA--GAGGCAGAATGTGGTGTTTCCTGGGGTGCGGGACGTTGGGGGTAGTAAGGCTGGAGCGGGTAGAGGAAAGGGCTAGGGTGACA-CCACGGGGTATTAGGCGGAACTGAGGGAAAC--AAATAGGAGCAGGGAAAAGGGAACG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   360349 338 -  91754291 -GAAGATTCAGCTCCGGGAGGCCAGCAGAATGACTTTTAGGTCTTCCTTGGATTCAGAAAATACTTCTCGAAAGAGATTCGAGCTAAATCTTACAGGATTAGAGGTTAGCTGGATGATAATAAATCAAGAGAGGAAATAGGACCTCCCGCAAAGGGCTGACCCAGGGCAGTGAGAACA-GGGGAAAGAGCTCGGAGGTACGGAGGCAGAATTTGGTTTTTCCCGGGGTGTAGGATGTTGGGGAAAGTAAGGCTGGAGCGGGTAGAGGAAAGGGCTAGGGTGACA-CCACAGGGTATTAGGCGGAACTGAGGGAAAC--AAataggagcagggaaaagggaatg
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   849855 311 -  74750902 ---------ag---tgtgagatgggcagaatggcttttaggtcctccttggattcagaaaatacttctctaaagagatttgagctaaatcttacaggattagaggtaagctggatgaaaataaaccaagagaggaaacaggggct-ctgcaaaggcctgac-------------agcg---ggaaagagcttggaggtaaagaggcaga-tttggtgattccc-gagtgtaggacgttggggacagtaaggctgcagcgggtggaggaaagggctggggcgacacccatggggcaTTAGGTGGAGCTGAGGGAAACAGAAACGGGGGC-GCGAAAAGGGAATA
i calJac3.chr17                C 0 I 316
e nomLeu3.chr11                120806746  10 + 123690457 I

a score=339308.000000
s hg38.chr3_KI270935v1_alt         64651 160 +    197351 agaacgggaaagagggaggtgggaaatagaagagggaGTTTCCAAACAGCAACAACAACAGAAACAAGTGTTTTGGGTTGTGGAGCGTTTGCCCTGCAGAGAGCTGGGTCTGCCCTTGTCCCTTTTGGGGATTATGAATCAGTGCGTGG-AGCCGCGCGGC-
s panTro4.chr3_GL389630_random     26548 160 +    103936 AGAACGGGAAAGAGGGAGGTGGGAAATAGAAGAGGGAGTTTCCAAACAGCAACAACAACAGAAACAAGTGTTTTGGGTTGTGGAGCATTTGCCCTGCAGAGAGCTGGGTCTGCCCTGGTCCCTTTTGGGGATTATGGATCAGTGGGTGG-AGCCATGCGGC-
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199710717 160 + 202140232 AGAACGGGAAAGAGGGAGGTGGGAAATGGGAGAGGGAGTTTCCAAACAGCAACAACAACAGAAACAAGTGTATTGGGTTGTGGAGCGTTTGTCCTGCAGAGAGCTGGGTCTGCCCTGGTCCCTTTTGGGGATTATGGATCAGTGGGTGG-AGCCGCGCGGC-
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                      2640 159 - 192599291 AGAACGGAAAAGAGGGAGGTGGGAAATAGGAGAGGGAGTTTCCAAACAGCAAC-ACAACAGAAACAAGTGTATTGGGTTGTGGAGCATTTGCCCTGGTGAGAGCTGGGTCTGCCCTGGACATTTGTGGGGATTATGGATCAGCGCGTGG-AGCTGCGCGGC-
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     11152 159 + 192460366 AGAACGGAAAAGAGGGAGGTGGGAAATAGGAGAGGGAGTTTCCAAACAGCAAC-ACAACAGAAACAAGTGTATTGGGTTGTGGAGCATTTGCCCTGGTGAGAGCTGGGTCTGCCCTGGACATTTGTGGGGATTATGGATCAGCGCGTGG-AGCTGCGCGGC-
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     10017 159 - 187378091 AGAACGGAAAAGAGGGAGGTGGGAAATAGGAGAGGGAATTTCCAAACAGCAAC-ACAACAGAAACAAGTGTGTTGGGTTGTGGAGCATTTGCCCTGGTGAGAGCTGGGTCTGCCCTGGACATTTGTGGGGATTATGGATCAGTGCGTGG-AACTGCGCAGC-
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   360687 159 -  91754291 agaacgggaaacagggaggtgggaaataggagagggagTTTCCAAACAGCAAC-ACAACAGAAACAAGTGTATTGAGTTGTGGAGCATTTGCCCTGGAGAGAGCTGGGTCTGCCCTGGACATTTGTGGGGATTATGGATCAGTGCATGG-AGCCGCGCGGC-
i chlSab2.chr15                C 0 I 102
s calJac3.chr17                   850482 162 -  74750902 AGAACAGGAAAGAGAGAGGGGGGAAATAGGAAAGGGAATTTCCAAACAGCAAGAACAGCAGAAACAAGTTTATTGGGTTGTGGAGCATTTGCCCTGCACGACGCTGTGTCCGGCCGGGATGCTCTTGAGGATTGTGTATCAGTGCGTATCAGCCGCGTGAGT
i calJac3.chr17                I 316 C 0
e nomLeu3.chr11                120806746  10 + 123690457 I

a score=42644.000000
s hg38.chr3_KI270935v1_alt         64811 17 +    197351 CACATCCACCATTCACT
s panTro4.chr3_GL389630_random     26708 17 +    103936 CACATCCACCATTCACT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199710877 17 + 202140232 CACATCCACCATTCACT
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                      2799 17 - 192599291 CACATCCACCATTCACT
i rheMac3.chr2                 C 0 I 342
s macFas5.chr2                     11311 17 + 192460366 CACATCCACCATTCACT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     10176 17 - 187378091 CACATCCACCATTCACT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   360948 17 -  91754291 CACATCCACCATTCACT
i chlSab2.chr15                I 102 C 0
s calJac3.chr17                   850644 17 -  74750902 CACATTCACCATTTGCT
i calJac3.chr17                C 0 C 0
e nomLeu3.chr11                120806746 10 + 123690457 I

a score=37393.000000
s hg38.chr3_KI270935v1_alt         64828 17 +    197351 TGCACTTGAGTGACAGC
s panTro4.chr3_GL389630_random     26725 17 +    103936 TGCACTTGAGTGACAGC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199710894 17 + 202140232 TGCACCTGAGTGACAAC
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                      3158 17 - 192599291 TGCACCTGAGTGACAGC
i rheMac3.chr2                 I 342 C 0
s macFas5.chr2                     11328 17 + 192460366 TGTATCTGAGTGACGGC
i macFas5.chr2                 C 0 I 361
s papAnu2.chr2                     10193 17 - 187378091 TGTATCTGAGTGACGGC
i papAnu2.chr2                 C 0 I 259
s chlSab2.chr15                   360965 17 -  91754291 TGCACCTGAGTGACAGC
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   850661 17 -  74750902 TGCACTTGAATGACAGC
i calJac3.chr17                C 0 C 0
e nomLeu3.chr11                120806746 10 + 123690457 I

a score=517229.000000
s hg38.chr3_KI270935v1_alt         64845 239 +    197351 CAAGCTACAGTCATGAATACG----TTTCTTTCTTTTTACAgaagaacagtaaattgactttattccttataaaggtgatactggagaatgtgacatagatttgctggcacatgggtttcctatgagcaaaccccagaattggacacacgtatcTGGTGCTGCATTGGAATCATCCCAAAAAACCAAGGCTTGCATTGCATATCTATCTGCTGTCTGCTGAAGGAGCCCTGTCTGTGTGCCCA
s panTro4.chr3_GL389630_random     26742 239 +    103936 CAAGCTACAGTCATGAATACG----TTTCTTTCTTTTTAAAGAAGAACAGTAAATTGActttattccttatgaaggtgatactggagaatgtgacatagatttgctggcacatgggtttcctatgagcaaaccccagaattggacacacgtatcTGGTGCTGCATTGGAATCATCCCAAAAAACCAAGGCTTGCATTGCATATCTATCTGCTGTCTGCTGAAGGAGCCCTGTCTGTGTGCCCA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199710911 239 + 202140232 CGAGCTACAGTCATGAATACG----TTTCTTTCTTTTTAAAGAAGAACAGTAAATTGActttattccttataaaggtgatactggagaacgtgacatagatttgctggcacatgggtttcctatgagcaaaccccagaattggacacacgtatccaGTGCTACATTGGAACCATCCCAAAAAACCAAGGCTTGCATTGCATATCTGTCTGCTGTCTGCTGAAGGAGCCCTGTCTGTGTGCCCG
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                      3175 238 - 192599291 CAAGCTACAGTCATGACTACGTTTCTTTCTTTCTTTTta---aagaacaataaattgactttattccttataaaggtgatactggagaatgtgacatagatttgctggcacatgggtttcctatgaacaaaccccagaattggacagacgtatccaGTGCTACATTGGAACCATCCCAAAAAACCAAGGCCTGCATTGCATATCTATCTGCTGCCTGCTGAAGGAGCCCTGTCTGTGTGCC--
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     11706 236 + 192460366 CAAGCTACAGTCATGACTACG----TTTCTTTCTTTTta---aagaacaataaattgactttattccttataaaggtgatactggagaatgtgacatacatttgctggcacatgggtttcctatgaacaaaccccagaattggacagacgtatccaGCGCTACATTGGAACCATCCCAAAAAACCAAGGCCTGCATTGCATATCTATCTGCTGCCTGCTGAAGGAGCCCTGTCTGTGTGCCCA
i macFas5.chr2                 I 361 T 18
s papAnu2.chr2                     10469 240 - 187378091 CAAGCTACAGTCATGACtacgtttctttctttcttttta---aagaacaataAATTGACTTTATTCCTTATAAAGGTGATACTGGAGAATGTGACATAGATTTGCTGGCACATGGGTTTCCTATGAACAAACCCCAGAATTGGACAGACGTATCCAGTGCTACATTGGAACCATCCCAAAAAACCAAGGCCTGCATTGCATATCTATCTGCTGCCTGCTGAAGGAGCCCTGTCTGTGTGCCCA
i papAnu2.chr2                 I 259 T 18
s chlSab2.chr15                   360982 233 -  91754291 CAAGCTACAGTCATGACTACG----TTTCTTTCTTTTta---aagaacaataaattgactttattccttataaaggtgatactggagaatgtgacatagatttgctggcacatgggtttcctatgaacaaaccccagaattggacagatgtatccaGTGCTACACTGGAACCATCCC-AAAAACCAAGGCCTGCATTGCATATCTATCTGCTGTCTGCTGAAGGAGCCCTGTCTGTGTGCC--
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   850678 209 -  74750902 TAAGCTACAGTTACGGCTACA----TTTCTTTCTTTTTTT--AAGAACAGTAAATTGActtcgttccttataaagctgatactggagaatgtgacatagattcgctggcatgtgggtttcctgtgaataaaccccaaaactggacagacttacccaGTGCTACATTGGGACCATCACAGAAAGCCAAGGCCTGCATTCTGTATCTCCCTGTTGTC----------------------------
i calJac3.chr17                C 0 C 0
e nomLeu3.chr11                120806746  10 + 123690457 I

a score=7913.000000
s hg38.chr3_KI270935v1_alt         65084 50 +    197351 AGGA-AGTGACATCCTTGCCAAGGGCTGTCCCTGTCGCAGGAGATGAAGGA
s panTro4.chr3_GL389630_random     26981 50 +    103936 AGGA-AGTGACATCTTTGCCAAGGGCTGTCCCTGTCGCAGGAGATGAAGGA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199711150 51 + 202140232 AGGACAGTGGCTTCCTTGCCAAGTGCTGTCCCTGTCGCAGGAGATGAAGGA
i ponAbe2.chr3                 C 0 C 0
s calJac3.chr17                   850887  6 -  74750902 --------------------------------------------TGAAGG-
i calJac3.chr17                C 0 C 0
e rheMac3.chr2                      3413  0 - 192599291 C
e chlSab2.chr15                   361215  0 -  91754291 C
e macFas5.chr2                     11942 18 + 192460366 T
e papAnu2.chr2                     10709 18 - 187378091 T
e nomLeu3.chr11                120806746 10 + 123690457 I

a score=8917.000000
s hg38.chr3_KI270935v1_alt         65134 10 +    197351 GCCCTGTCTA
s panTro4.chr3_GL389630_random     27031 10 +    103936 GCCCTGTCTG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199711201 10 + 202140232 GCCCTGTCTA
i ponAbe2.chr3                 C 0 C 0
s papAnu2.chr2                     10691 10 - 187378091 GCCCTGTCTG
i papAnu2.chr2                 T 18 C 0
s calJac3.chr17                   850893 10 -  74750902 GCCCTGTCTA
i calJac3.chr17                C 0 C 0
e rheMac3.chr2                      3413  0 - 192599291 C
e chlSab2.chr15                   361215  0 -  91754291 C
e macFas5.chr2                     11942 18 + 192460366 T
e nomLeu3.chr11                120806746 10 + 123690457 I

a score=1692.000000
s hg38.chr3_KI270935v1_alt         65144 3 +    197351 TGT
s panTro4.chr3_GL389630_random     27041 3 +    103936 TGT
i panTro4.chr3_GL389630_random C 0 I 69
s ponAbe2.chr3                 199711211 3 + 202140232 TGT
i ponAbe2.chr3                 C 0 C 0
s papAnu2.chr2                     10701 3 - 187378091 TGT
i papAnu2.chr2                 C 0 C 0
e rheMac3.chr2                      3413 0 - 192599291 C
e calJac3.chr17                   850903 0 -  74750902 C
e chlSab2.chr15                   361215 0 -  91754291 C
e macFas5.chr2                     11942 18 + 192460366 T
e nomLeu3.chr11                120806746 10 + 123690457 I

a score=61968.000000
s hg38.chr3_KI270935v1_alt         65147 49 +    197351 GCTCAAGGACAGTGGCTTCCTTGCCAAGGGCTGTCCCTGTTGCAGGAGA
s panTro4.chr3_GL389630_random     27113 49 +    103936 GCTCAAGGACAGTGGCTTCCTTGCCAAGGGCTGTCCCTGTTGCAGGAGA
i panTro4.chr3_GL389630_random I 69 C 0
s ponAbe2.chr3                 199711214 49 + 202140232 GCCCAAGGACAGTGGCTTCCTTGCCAAGGTCTGTCCCTGTTGCAGGAGA
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                      3413 46 - 192599291 ---CAAGGACAGTGGCTTCCTTGCCAAGGGCCATCCCTATTGCAGGAGA
i rheMac3.chr2                 C 0 I 36
s papAnu2.chr2                     10704 49 - 187378091 GCCCAAGGACAGTGGCTTCCTTGCCAAGGGCCATCCCTATTGCAGGAGA
i papAnu2.chr2                 C 0 T 69
s chlSab2.chr15                   361215 46 -  91754291 ---CAAGGACAGTGGCTTCCTTGCCAAGGGCCGCCCCTATTGCAGGAGA
i chlSab2.chr15                C 0 I 37
e calJac3.chr17                   850903  0 -  74750902 C
e macFas5.chr2                     11942 18 + 192460366 T
e nomLeu3.chr11                120806746 10 + 123690457 I

a score=3984.000000
s hg38.chr3_KI270935v1_alt         65196 7 +    197351 TGAAGGA
s panTro4.chr3_GL389630_random     27162 7 +    103936 TGAAGGA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199711263 7 + 202140232 TGAAGGA
i ponAbe2.chr3                 C 0 C 0
s papAnu2.chr2                     10684 7 - 187378091 TGAAGGA
i papAnu2.chr2                 T 69 C 0
e rheMac3.chr2                      3459 36 - 192599291 I
e calJac3.chr17                   850903 0 -  74750902 C
e chlSab2.chr15                   361261 37 -  91754291 I
e macFas5.chr2                     11942 18 + 192460366 T
e nomLeu3.chr11                120806746 10 + 123690457 I

a score=7509.000000
s hg38.chr3_KI270935v1_alt         65203 13 +    197351 GCCCTGTCTATGT
s panTro4.chr3_GL389630_random     27169 13 +    103936 GCCCTGTCTATGT
i panTro4.chr3_GL389630_random C 0 T 138
s ponAbe2.chr3                 199711270  9 + 202140232 GCCCTGTGT----
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr2                     11924 13 + 192460366 GCCCTGTCTGTGT
i macFas5.chr2                 T 18 C 0
s papAnu2.chr2                     10691 13 - 187378091 GCCCTGTCTGTGT
i papAnu2.chr2                 C 0 C 0
e rheMac3.chr2                      3459 36 - 192599291 I
e calJac3.chr17                   850903  0 -  74750902 C
e chlSab2.chr15                   361261 37 -  91754291 I
e nomLeu3.chr11                120806746 10 + 123690457 I

a score=42314.000000
s hg38.chr3_KI270935v1_alt         65216 49 +    197351 GCTCAAGGACAGTGGCTTCCTTGCCAAGGGCTGTCCCTGTTGCAGGAGA
s panTro4.chr3_GL389630_random     27044 49 +    103936 GCTCAAGGACAGTGGCTTCCTTGCCAAGGGCTGTCCCTGTTGCAGGAGA
i panTro4.chr3_GL389630_random T 138 C 0
s ponAbe2.chr3                 199711279 49 + 202140232 GCCTGAGGACAGTGGCTTCCTTGCCAAGGGCTGTCCCTGTTGCTGGAGA
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr2                     11937 49 + 192460366 GCCCAAGGACAGTGGCTTCCTTGCCAAGGGCCATCCCTATTGCAGGAGA
i macFas5.chr2                 C 0 T 69
s papAnu2.chr2                     10704 49 - 187378091 GCCCAAGGACAGTGGCTTCCTTGCCAAGGGCCATCCCTATTGCAGGAGA
i papAnu2.chr2                 C 0 T 69
e rheMac3.chr2                      3459 36 - 192599291 I
e calJac3.chr17                   850903  0 -  74750902 C
e chlSab2.chr15                   361261 37 -  91754291 I
e nomLeu3.chr11                120806746 10 + 123690457 I

a score=59871.000000
s hg38.chr3_KI270935v1_alt         65265 69 +    197351 TGAAGGAGCCCTGTCTATGTGCTCAAGGGCAGTGGCTTCCTTGCCAAGGGCTGTCCCTGTTGCAGGAGA
s panTro4.chr3_GL389630_random     27093 69 +    103936 TGAAGGAGCCCTGTCTATGTGCTCAAGGACAGTGGCTTCCTTGCCAAGGGCTGTCCCTGTTGCAGGAGA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199711328 69 + 202140232 TGAAGGAGCCCTGTCTATGAGCCCAAGGACAGTGGCTTCCTTGCCAAGGTCTGTCCCTGTCGCAGGAGA
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr2                     11917 69 + 192460366 TGAAGGAGCCCTGTCTGTGTGCCCAAGGACAGTGGCTTCCTTGCCAAGGGCCATCCCTATTGCAGGAGA
i macFas5.chr2                 T 69 T 44
s papAnu2.chr2                     10684 69 - 187378091 TGAAGGAGCCCTGTCTGTGTGCCCAAGGACAGTGGCTTCCTTGCCAAGGGCCATCCCTATTGCAGGAGA
i papAnu2.chr2                 T 69 T 44
e rheMac3.chr2                      3459 36 - 192599291 I
e calJac3.chr17                   850903  0 -  74750902 C
e chlSab2.chr15                   361261 37 -  91754291 I
e nomLeu3.chr11                120806746 10 + 123690457 I

a score=18086.000000
s hg38.chr3_KI270935v1_alt         65334 80 +    197351 TGAAGGAGCCCTGTCTATGTGCTCAAGGACAGTGGCTTCCTTGCCAAGGGCTGTATCTGTTGCAGGAGATGAAGGAGCC----C
s panTro4.chr3_GL389630_random     27162 80 +    103936 TGAAGGAGCCCTGTCTATGTGCTCAAGGACAGTGCCTTCCTTGCCAAGGGCTGTATCTGTTGCAGGAGATGAAGGAGTC----C
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199711397 80 + 202140232 TGAAGGAGCCCTG----TGTGCCTGAGGACAGTGGCTTCCTTGCCAAGGGCTGTCCCTGTTGCAGGAGATGAAGGAGCCTTGTC
i ponAbe2.chr3                 C 0 C 0
e rheMac3.chr2                      3459 36 - 192599291 I
e calJac3.chr17                   850903  0 -  74750902 C
e chlSab2.chr15                   361261 37 -  91754291 I
e macFas5.chr2                     11986 44 + 192460366 T
e papAnu2.chr2                     10753 44 - 187378091 T
e nomLeu3.chr11                120806746 10 + 123690457 I

a score=4013.000000
s hg38.chr3_KI270935v1_alt         65414 10 +    197351 TGTGTGCCTG
s panTro4.chr3_GL389630_random     27242 10 +    103936 TGCGTGCCTG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199711477 10 + 202140232 TATGTGCCCA
i ponAbe2.chr3                 C 0 C 0
s calJac3.chr17                   850903 10 -  74750902 TGTGTGCCCA
i calJac3.chr17                C 0 C 0
e rheMac3.chr2                      3459 36 - 192599291 I
e chlSab2.chr15                   361261 37 -  91754291 I
e macFas5.chr2                     11986 44 + 192460366 T
e papAnu2.chr2                     10753 44 - 187378091 T
e nomLeu3.chr11                120806746 10 + 123690457 I

a score=88372.000000
s hg38.chr3_KI270935v1_alt         65424 116 +    197351 AGGACAGTGGCTTCCTTGCCAAGGGCTGTCCCTGTAGCAGGGG-AAAGCCTTTCAGGACCCTTTCTTAGAGAAATAGGTCTCAAAGTGAATGAATATAC------CTCCTCACATACTCACCA
s panTro4.chr3_GL389630_random     27252 116 +    103936 AGGACAGTGGCTTCCTTGCCAAGGGCTGTCCCTGTAGCAGGGG-AAAGCCTTTCAGGACCCTTTCTTAGAGAAATAGGTCTCAAAGTGAATGAATATAC------CTCCTCACATACTCACCA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199711487 116 + 202140232 AGGACAGTGGTTTCCTTGCCAAGGGCTGTCCCTGTAGCAGGGG-AAAGCCTTTCAGGACCCCTTCTTAGAGAAATAAGTCTCAAAGTGAATGAATATAC------CTCCTCACATACTCACCA
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr2                     11942  81 + 192460366 AGGACAGTGGCTTCCTTGCCAAGGGCCATCCCTATTGCAGGAG-AAAGCCTTTCAGGACCCC-TCTTACAGAAACACATCTCA----------------------------------------
i macFas5.chr2                 T 44 C 0
s papAnu2.chr2                     10709  81 - 187378091 AGGACAGTGGCTTCCTTGCCAAGGGCCATCCCTATTGCAGGAG-AAAGCCTTTCAGGACCCC-TCTTACAGAAACATGTCTCA----------------------------------------
i papAnu2.chr2                 T 44 C 0
s calJac3.chr17                   850913 122 -  74750902 AGGAAAGTGACTTCCTTGTTGCGGGCTATCCCTGTCGCAGGAGAAAAGTCTTTCAGACACCT-TCTTAGAGAAATGCTTCTCAAAGTGAATAAATGAACCTTGTGCTCCTTACATACTCACCA
i calJac3.chr17                C 0 C 0
e rheMac3.chr2                      3459  36 - 192599291 I
e chlSab2.chr15                   361261  37 -  91754291 I
e nomLeu3.chr11                120806746  10 + 123690457 I

a score=158285.000000
s hg38.chr3_KI270935v1_alt         65540 73 +    197351 AGCAGCCTGCAGAGGATACAGCTTTCCATGTGGCTCAGGGAACAGTTGATATCAACAGTCTCTCAATTCCT------TT
s panTro4.chr3_GL389630_random     27368 79 +    103936 AGCAGCCTGCAGAGGATACAGCTTTCCATGTGGCTCAGGGAACAGTTTATATCAACAGTCTCTCAATTTCTttattatt
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199711603 73 + 202140232 AGCAGCCTGCAGAGGATACAGCTTTCCATGTGGCTCAGGGAACAGTTGATATCAACAGtctctcaatttct------tt
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                      3495 74 - 192599291 AGCAGCCTGCAGAGGATACAGCTTTCCATGTGGCTCAGGGAGCAGTTGATATCAACATTCTCTCAATTTGA-----ATT
i rheMac3.chr2                 I 36 C 0
s macFas5.chr2                     12023 73 + 192460366 -GCAGCCTGCAGAGGATACAGCTTTCCATGTGGCTCAGGGAGCAGTTGATATCAACATTCTCTCAATTTGA-----ATT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     10790 73 - 187378091 -GCAGCCTGCAGAAGATACAGCTTTCCATGTGGCTCAGGGAGCAGTTGATATCAACATTCTCTCaatttga-----att
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   361298 74 -  91754291 AGCAGCCTGCAGAGGATATAGCTTTCCATGTGGCTCAGGGAGCAGTTGATATCAACATTCTCTCAATTTGA-----ATT
i chlSab2.chr15                I 37 C 0
s calJac3.chr17                   851035 73 -  74750902 AGCAACCTGCAGCAGACACAACTTTCCAAATGGCTCAAGGAGCAGTTTATATCGACATTCTCTCAAtttct------tt
i calJac3.chr17                C 0 I 957
e nomLeu3.chr11                120806746 10 + 123690457 I

a score=482362.000000
s hg38.chr3_KI270935v1_alt         65613 297 +    197351 Atta-ttattattattatactttaagttctgggatacatg------------------------------------------------------------------tgcagaacgtgcagcgttgttacataggtatatatgtgccatggtggtttgctgcacccatcaacctgtcatctacattgggtatttctcctaatgctatccctccccttgcccccaacctcccaacaggcaccggtgtgtgatgttcccctccctgtgtccatatgttctcattgttcaacttccacttatgagtgagaacatgcagtgtttggttttctgttcctgtgttagtttgctgagaatgatggtttccag
s panTro4.chr3_GL389630_random     27447 297 +    103936 atta-ttattattattatactttaagttctgggatacatg------------------------------------------------------------------tgcagaacatgcagggttgttacataggtatatatgtgccatggtggtttgctgcacccatcaacctgtcatctacattgggtatttctcctaatgctatccctccccttgcccccaacctcccaacaggcaccagtgtgtgatgttcccctccctgtgtccatatgttctcattgttcagctcccacttatgagtgagaacatgtggtgtttggttttctgttcctctgttagtttgctgagaatgatggtttccag
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199711676 360 + 202140232 atta-ttattattatta---ttaaagttttgggatacatgtgccggacgtgcaggtttgttacataggtatatatgtgccatggtggtttgctgcannnnnnnnnntgcaggacgtgcaggtttgttacataggtatatatgtgccatggtggtttgctgcacccataaacctgtcatctacattgggtatttctcctaatgctatccctccccttgcccccaacctcccaacaggcactggtgtgtgatgttctcctccctgtgtccatatgttctcattgttcaactcccacttatgaatgagaacatgcagtgtttggttttctgttcctgtgttagtttgctgagaatgatggtttccag
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                      3569 294 - 192599291 Attatttattattattatactttaagttctggg--acatg------------------------------------------------------------------tgcagaacgtgcaggtttgtttcataggtatgtacgtgccatggt-gtttgctgcacccatcaacccgtcatctacattgggtatttctcctaatgctctccctgccccagccccccaccccctgacaggccccggtgtgtgatgttcccctccct-tgtccatgtgttctcattgttcaactcccacttatgagtgagaacatgcggtctttggttttctattcctgtgatagtttgctgagaatgatggtttccag
i rheMac3.chr2                 C 0 M 585
s macFas5.chr2                     12096 294 + 192460366 Attatttattattattatactttaagttctggg--acatg------------------------------------------------------------------tgcagaacgtgcaggtttgtttcataggtatgtacgtgccatggt-gtttgctgcacccatcaacccgtcatctacattgggtatttctcctaatgctctccctgccccagccccccaccccctgacaggccgcggtgtgtgatgttcccctccct-tgtccatgtgttctcattgttcaactcccacttatgagtgagaacatgcggtctttggttttctattcctgtgatagtttgctgagaatgatggtttccag
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     10863 295 - 187378091 attatttattattattatactttaaattctgggatacatg------------------------------------------------------------------tgcagaacatgcaggtttgtttcataggtatgTACATGCCGTggt-gtttgctgcacccatcaacccgtcagcTCCGTtgggcatttctcctaatgctctccctgccccag-cccccaccccctgacaggccccagtgtgtgatgttcccctccct-tgtccatgtgttctcattgttcaactcccacttatgagtgagaacatgcggtctttggttttctattcctgtgatagtttgctgagaatgatggtttccag
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   361372 297 -  91754291 Attatttattattattatactttaagttctgggatacacg------------------------------------------------------------------tgcagaacgtgcaggtttgtttcataggtatatatgtgccatggcggtttgctgcacccatcaacccgtcatctacattgggtatttctcctaatgctctccctcccctagccccctaccccctgacagtccctggtgtgtgatgttcccctccct-tgtccatgtgttctcattgttcaactcccacttatgagtgagaacatgcggtctttggttttctattcctgtgatagtttgctgaaaatgatggtttccag
i chlSab2.chr15                C 0 C 0
e calJac3.chr17                   851108 957 -  74750902 I
e nomLeu3.chr11                120806746  10 + 123690457 I

a score=573318.000000
s hg38.chr3_KI270935v1_alt         65910 446 +    197351 tgtcatccatgatcctgcaaaggacatgaactcat-ccttttttatggctgcatagtattccatggtgtctatgtgccacattttctttaaccagtctgtcattgatgggcatttgggttggttccaagtctttgctattgtgaatagtgccgcaataaacatacatgtgctcggggctgggcgcggtggctcaaacctgtaatcccagcactttgggaggctgaggcgggtggatcacgaggtcaggagatcaagaccattctggccaacatggtgaaaccccttctctagtaaaatgcaaaaaattagctgggcgtggtggtgtgtgcctgtagttccagctactcaggaggctgaggcaagagaatcgcttgaacccgggaggtggaggttgcagtgagccgagaccgtgccactgcactccagcctggcaacagagcaagact
s panTro4.chr3_GL389630_random     27744 446 +    103936 tgtcatccatgtccctgcaaaggacatgaactcat-ctttttttatggctgcatagtattccgtggtgtctatgtgccacattttctttaaccagtctatcattgatggacatttgggttggttccaagtctttgctattgtgaatagtgctgcaataaacatacatgtgcttggggctgggcgcggtggctcaaatctgtaatcccagcactttgggaggctgaggcgggtggatcacgaggtcaggagatcaagaccatcctggccaacatggtgaaaccccttctctagtaaaatgcaaaaaattaaccaggcgtggtggtgtgtgcctgtagttccagctactcaggaggctgaggcaggagaatcacttgaacccgggaggtggaggttgcagtgagccgagaccgtgccactgcactccagcctggtaacagagcaagact
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199712036 446 + 202140232 tgtcatctatgtccctgcaaaggacatgaactcat-ccttttttatggctgcatagtattccgtggtgtctatgtgccacattttctttaaccagtttatgattgatgggcatttgggttggttccaagtctttgctattgtgaatagtgccgcaataaacatacatgtgcttggggctgggcatggtggctcaaacctgtaatcccagcacttcgggaggctgaggcgggtggatcatgaggtcaggagatcaagaccatcctggtcaacatggtgaaaccccatctctagtaaaatgcaaaaaattagccgggcatggtggtgtgtgcctgcagttccagctactcgggaggctgaggcaggagaatcacttgaaactgggaggtggaggttgcagtgagccgagaccgcaccactgcactccagcctggtaacagagcaagact
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr2                     12390 447 + 192460366 cttcatccatgtccctgcaaaggacatgaactcatgctttttttatggctgtatagtattccatagtgtatatgtgccacattttctttatccagtctatcattgatggacatttgggtaggttccaaatctttgctattgtgaatagtgctgcaataaacatatgtgtgcttggggatgggcacgatggctcacgcctgtaatcccagcactttgggaggctgaggcaggtggatcacaaggtcaggagatcgagaccatcctggccaacatggtgaaaccccgtctctagtaaaatgcaaaaaattagccaggcgtggtggtgtgtgcctgtggttccagctactcgggaggctgaggcaggagaatcacttgaacctgggagatggaggttgcagtgagccgagactatgccattgcactccagcctggtgacagagcaagact
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     11158 446 - 187378091 cttcatccatgtccctgcaaaggacatgaactcat-ccttttttatggctgtatagtattccatagtgtatatgtgccacattttctttatccagtctatcattgatggacatttgggtaggttccaaatctttgctattgtgaatagtgctgcaataaacatatgtgtgcttggggatgggcacgatggctcacgcctgtaatcccagcactttgggaggctgaggcgggtggatcacaaggtcaggagatcgagaccatcctggccaacatggtgaaaccccgtctctagtaaaatgcaaaaaattagccaggcgtggtggtgtgtgcctgtggttccagctactcgggaggctgaggcaggagaatcacttgaacctgggagatggaggttgcagtgagccgagactatgccattgcactccagcctggtgacagagcaagact
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   361669 447 -  91754291 cttcatccatatccctgcaaaggacatgaactcatcccttttttatggctgcatagtattccatggtgtatatgtgccacattttctttatccagtctatcattgatggatgtttgggtaggttctaaatctttgctattgtgaatagtgctgcaataaacatatgtgtgcttgGggctgggcacgatggctcacgcctgtaatcccaacactttgggaagctgaggcgggtggatcacaaggtcaggagatcgagaccatcctggccaacatggtgaaacctcgtctctagtaaaatgcaaaaaattagccaggcgtggtggtgtgtgcctgtagttccagctactcgggaggctgaggcaggagaatcacttgagcttgggaggtggaggttgcagtgagctgagaccgtgccattgcactccagcctggtgacagagcaagact
i chlSab2.chr15                C 0 I 82
e rheMac3.chr2                      3863 585 - 192599291 M
e calJac3.chr17                   851108 957 -  74750902 I
e nomLeu3.chr11                120806746  10 + 123690457 I

a score=8700.000000
s hg38.chr3_KI270935v1_alt         66356 17 +    197351 ccgtctcaa----aaataa-------------ta
s panTro4.chr3_GL389630_random     28190 21 +    103936 ccgtctcaaaaataaataa-------------ta
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199712482 21 + 202140232 ccgtctcaaaaataaataa-------------ta
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr2                     12837 32 + 192460366 --gtatcaaaaataaataaataaataaataagca
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     11604 32 - 187378091 --gtatcaaaaataaataaataaataaataagca
i papAnu2.chr2                 C 0 C 0
e rheMac3.chr2                      3863 585 - 192599291 M
e calJac3.chr17                   851108 957 -  74750902 I
e chlSab2.chr15                   362116 82 -  91754291 I
e nomLeu3.chr11                120806746 10 + 123690457 I

a score=170095.000000
s hg38.chr3_KI270935v1_alt         66373 139 +    197351 aataaacatacgtgtgcatgtgtctttacagtagaatgatttataatcctttgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccttgaggaatcgccacactgtcttccacaat
s panTro4.chr3_GL389630_random     28211 139 +    103936 aataaacatacgtgtgcatgtgtctttacagtagaatgagttataatcctttgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccttgaggaatcgccacactgtcttccacaat
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199712503 139 + 202140232 cataaacatacgtgtgcatctgtctttatagtagaatgatttataatcctttgggtatatacccagtaatgggattgctgggtcaaatggtatttctagttctagatccttgaggaatggccacactgtcttccacaat
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr2                     12869 139 + 192460366 aacaaacgtatgtgtgcatgtgtctttatagcagcatgatttataatcctttgggcatatacccagtaatgggattgctgggtcaaatggtatttctagtgctagatccttgaggaatcgccacactgtcttccacaat
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     11636 139 - 187378091 aacaaatgtatgtgtgcatgtgtctttatagcagcatgatttataatcctttgggcatatacccagtaatgggatggctgggtcaaatggtatttctagcgctagatccttgaggaatcgccacactgtcttccacaat
i papAnu2.chr2                 C 0 C 0
s calJac3.chr17                   852065 139 -  74750902 aataagcatatgtgtgcatgtgtcctttcagtagagtgatttataatccatcgagtatatacccagtaatgggattgctgggtcaaatggtgtttctagttgtaggtccttgaggagtctccacaccgtcttccacaat
i calJac3.chr17                I 957 C 0
e rheMac3.chr2                      3863 585 - 192599291 M
e chlSab2.chr15                   362116  82 -  91754291 I
e nomLeu3.chr11                120806746  10 + 123690457 I

a score=220874.000000
s hg38.chr3_KI270935v1_alt         66512 134 +    197351 ggttgaactaatttgcactcccaccaacagtgtaaaactattcctatttctctacatcctctccagcatctgttgtttcctgactttttaatgatcaccattctaactggtgtgagatgatatctcattgtggt
s panTro4.chr3_GL389630_random     28350 134 +    103936 ggttgaactaatttgcactcccaccaacagtgtaaaaatgttcctatttctctacatcctctccagcatctgttgtttcctgactttttaatgatcaccattctaactggtgtgagatggtatctcattgtggt
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199712642 134 + 202140232 ggttgaactaatttgcactcccacaaacagtgtaaaaacattcctatttctctacatcctctccagcatctgttgtttcctgactttttaatgatcaccattctaactggtgtgagatggtatctcgttgtggt
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr2                     13008 134 + 192460366 ggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctgttcctccacatcctctgcagcacttgttgtttcctgactttataatgatcaccattctacctggagtgagatggtatctcattatggt
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     11775 134 - 187378091 ggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttataatgattgccattccacctggagtgagatggtatctcattgtggt
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   362198 134 -  91754291 ggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgatcaccattctacctggtgtgagatggtaactcattgtggt
i chlSab2.chr15                I 82 C 0
s calJac3.chr17                   852204 132 -  74750902 gggtgaactaatttacactcccaccagcagtgtaaaagcgtttctatttctccacatcctctccagcatctgttgtttcccgactt--taatcattgccattctaactggcgcgagatggtatctcacgggagt
i calJac3.chr17                C 0 C 0
e rheMac3.chr2                      3863 585 - 192599291 M
e nomLeu3.chr11                120806746  10 + 123690457 I

a score=2061286.000000
s hg38.chr3_KI270935v1_alt         66646 965 +    197351 tttgatttgcatttctctaatgatcagtgacgatgag-tttttttc--atgtttgttggctgcataaatgtc-----ttgagaagtgtctgttcatatcctttgcacactttctgatggggttgtttg-----ttcttgtaaatttacttaagttccttgtaaattctggatattagccctttgtcggatggatagattgcaaaaattttcttccattctgtaggttgcctgttcactctgcctggtcatatgcagaaaaccgaaactagaccccttgctgaca-cttatacaaaaattaactcaagatgcattaaagatttaaacgtgagacctaaaaccagaaaaatcctagaagaaaacctaggcaacaccattgaggacgtaagcatgggcaaagac-ttcatgactaaaacaccaaaagaaatggcaacaaaagccaaaattgacaaaaggtatctaatgaaactagagagcttctgcacagcaTGACTGTATTTCAGTGCACGTTTACCACCGAGCTCTTAACGCTCCACCACTGTCCTGTGTCATTAGGATCCCAGCTCTGCAGCCATTCCTCTAGTTGGGCCTGGGTCGGCTCTGGGATGCCGCGGggg--ggccggtcggcggcggaggggccagtggg--gacccggggcaggg-gCGGAGACCCCTCCCACTGCACATCCCACTGCCTGGGTATCT-GGCCCCCAACCGGCCTGCCCGCTGCTCCCACCTCCCATGGtgggtcgggggctgagggctggggactggggcagggTACCCCAAATATCTCTCGGTGGCGATCGCTCAGTCCGTGCAGTCCATCCAGCTCCTGCATTGTCCGTCCTACCAATAACCTCTCACTTGCAATTCTCAGCCCCTTCCTGCATTGTCTCCCTGTGAGACCTACTAGAA--CCCCCGCCTTTCACACTGCTGACCTGCTGGGGGAAAATGCACAGAGGCAGAGACGAGGCCACGCG
s panTro4.chr3_GL389630_random     28484 969 +    103936 tttgatttgcatttctctaatgatcagtgacgatgagctttttttcgtatgtttgttggctgcataaatgtc-----ttgagaagtgtctgttcatatcctttgcacactttctgacggggttgtttg-----ttcttgtaaatttacttaagttccttgtaaattctggatatcagccctttgttggatggatagattgcaaaaatttttttccattctgtaggttgcctgttcactctggctggtcatatgcagaaaaccgaaactagacccctttctgacaccttatataaaaattaactcaagatgcattaaagatttaaacgtgagacctaaaaccagaaaaatcctagaagaaaacctaggcaataccattgaggacataagcatgggcaaagactttcatgactaaaacaccaaaaggaatggcaacaaaagccaaaattgacaaaaggtatctaatgaaactagagagcttctgcacagcaTGACTGTATTTCAGTGCACGTTTACCACCGAGCTCTTAACGCTCCACCACTGTCCTGTGTCATTAGGATCCCAGCTCTGCAGCCATTCCTCTAGTTGGGCCTGGGTCGGCTCTGGGATGCCGC-GGGG--GACCAGTGGGCGGCAGAGGGGCCAGTGGG--GACCCGGGGCAGGG-GCGGAGACCCCTCCCACTGCACATCCCACTGCCTGGGTATCT-GGCCCCCAACCGGCCTGCCCGCTGCTCCCACCTCCCATGGTGGGTCGGGGGCTGGGGGCTGGGGACTGGGGCAGGGTACCCCAAATATCTCTCGGTGGCGATCGCTCAGTCCGTGCAGTCCATCCAGCTCCTGCATTGTCCGTCCTACCAATAACCTCTCACTTGCTATTCTCAGCCCCTTCCTGCATTGTCTCCCTGTGAGACCTACTAGAA--CCCCCACCTTTCACACTGCTGACCTGCTGGGGGAAAATGCACAGAGGCACAGACAAGGCCACGCG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199712776 965 + 202140232 tttgatttgcatttctgtaatgatcagtgatgatgtgctttttttcatgtgtcttttggctgcataaatgtcttcttttgaaaagtgtctgctcatatccttcgcccactttctgacggagttgtttt----cttcttgtaaatttacttaagttcctcgtaaattctggatattagccctttgtcggatggatagattgcaaaaattttcttccattctgtaggttgcctgttcactctggctagtcatatgcagaaaactgaaactagaccccttcctgacaccttatataaaaattaactcaagatggattaaagatttaaacgtaagacccaaaaccagaaaaatcctagaagaaaacctaggcaataccatccaggacataagcatgggcaaagac-ttcatgactaaaacaccaaaagcaatggtagcaaaagccaaaattgacaaaagggatctaattaaactaaagagcttctgcacagcaTGACTGTATTTCAATGCATGTTTACCACCAAGCTCTTAATGCTCCACCACTGTCCTGTGTCATTAGGATCCCAGCCCTGCAGCCATTCCTCTAGTTGGGCCTGGGTTGGCTCTGGGATGCTGC-GGGG--GGCTGGTGGGTGGCAGAGGGGCCAGTGGG--GACCTGGGAC--GG-GTGGAGACCCCTCCCACTACACATCCCACTGCCTGGTCATCT-GGCCCCCCACCGGCTTGCCCGCTGCTCCCACCTCCCATGGTGGGT-------TGGGGGCTGGGGACTGGGGCAGGGTGCCCCAAATATCTCTCGGTGGCGATCGCTCAGTCCCTGCAGTCCATCCAGCTCCTGCATTGTCCATCCTACCAATAACCTCTCACTTGCTATTCTCAGCCCCTTCCTGCATTGTCTCCCTGTGAGACCTACTAGAA--CCCCCACCTTTCACACCACTGACCTgctggaggaaaatgcacagaggtacagacgaggccacgca
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                      4468 955 - 192599291 tttgatttgcatttctctaatgaccagtgatgatgagctttttttc--atgtttgttggctgcataaatgtt-----ttgagaagtgtctgttcatatgctttgcacactttctgatgggattgtttgttttcttcttgtaaatttacttaagttccttgtaaattctggatattagccctttgtcagatggatagattgtaaaaattttctcccattctgtagg-tacctgttcactctggctagtcttatgcggaaaactgaaactggaccccttcctgacacctcatacaaaaatt-----aagatggattacagacttaaacgtaagacctaaaaccagaaaaaccctagaagaaaacctaggcaataccactcaggacataggcatgggcaaagac-ttcatgactaaaacaccaaaagcaatggcaacaaaagccaaaactgacaaaagggatctaattacactaaagagcttctgcacagcaTGACTGTATTTCAGTGCATGTTTACCACCGAACTCTTAATGCTCCACCACTGCCCTGTGTCATTAGGATCCCAGCTCTGCAGCCATTCCTCTAGTTGGGCCTGGGTCGGCTCTGGGATGCCAC---GG--GGCCGGTAGGCTGCGGAGGGGCCAGTGGG--GCCCTGGGGCCAAG-GCAGAGACCCCTCCCGCTGCACATCCCACTGCTTGGGCACCT-GGCCCCCCGCAGGCCCGCCCGCTGCTCCCGCCTCCCGTGGAGGGT-------CGGGGGCTGGGGACTGGGGAAGGGTACCCCAAATATCTCTGGGTGGCGATCGCTCAGCCCCTCCAGTCCATCCAGCTCCTGCATTGTCCGTCCTACCAATAACCTCTCACTTGCTATTCTCAGCCCCTTCCTGCCTTGTCTCCCTGTGAGACCTACTGGAA-CCCCCCACCTTTCACACCACTGACCAGCTGGAGGAAAA--CGCAGAGGCACAGACTAGGCCACGTG
i rheMac3.chr2                 M 585 I 8
s macFas5.chr2                     13142 955 + 192460366 tgtgatttgcgtttctctaatgatcagtgatgatgagctttttttc--atgtttgttggctgcataaatgtc-----ttgagaagtgtctgttcatatgctttgcacactttctgatgggattgtttgttttcttcttgtaaatttacttaagttccttgtaaattctggatattagccctttgtcagatggatagattgtaaaaattttctcccattctgtagg-tacctgttcactctggctagtcttatgcggaaaactgaaactggaccccttcctgacacctcatacaaaaatt-----aagatggattacagacttaaacgttagacctaaaaccagaaaaaccctagaagaaaacctaggcaataccactcaggacataggcatgggcaaagac-ttcatgactaaaacaccaaaagcaatggcaacaaaagccaaaactgacaaaagggatctaattacactaaagagcttctgcacagcaTGACTGTATTTCAGTGCATGTTTACCACCGAACTCTTAATGCTCCACCACTGCCCTGTGTCATTAGGATCCCAGCTCTGCAGCCATTCCTCTAGTTGGGCCTGGGTCGGCTCTGGGATGCCGC---GG--GGCCGGTAGGCTGCGGAGGGGCCAGTGGG--GCCCTGGGGCCAAG-GCAGAGACCCCTCCCGCTGCACATCCCACTGCTTGGGCACCT-GGCCCCCTGCAGGCCCGCCCGCTGCTCCCGCCTCCCGTGGAGGGT-------CGGGGGCTGGGGACTGGGGAAGGGTACCCCAAATATCTCTGGGTGGCGATCGCTCAGCCCCTCCAGTCCATCCAGCTCCTGCATTGTCCGTCCTACCAATAACCTCTCACTTGCTATTCTCAGCCCCTTCCTGCCTTGTCTCCCTGTGAGACCTACTGGAA-CCCCCCACCTTTCACACCACTGACCAGCTGGAGGAAAA--CGCAGAGGCACAGACTAGGCCACGTG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     11909 956 - 187378091 tgtgatttgcgtttctctaatgatcagtgatgatgagttttttttc--atgtttgttggctgcataaatgtc-----ttgagaagtgtctgttcatatgctttgcacACTTTCTGATGGgatggtttgttttcttcttgtaaatttacttaagttccttgtaaattctggatattagccctttgtcagatggatagattgtaaaaattttctcccattctgtaggttacctgttcactctggcTAGTcttatgcagaaaactgaaactggaccccttcctgacacctcatacaaaaatt-----aagatggattacagacttaaacgtaagacctaaaaccagaaaaaccctagaagaaaacctaggcaataccactcaggacataggcatgggcaaagac-ttcatgactaaagcaccaaaagcaatggcaacaaaagccaaaactgacaaaagggatctaattacactaaagagcttctgcacagcatgaCTGTATTTCAGTGCATGTTTACCACCGAACTCTTAATGCTCCACCACTGCCCTGTGTCATTAGGATCCCAGCTCTGCAGCCATTCCTCTAGTTGGGCCTGGGTCGGCTCTGGGATGCCGC---GG--GGCCGGTAGGCTGCGGAGGGGCCGGTGGG--GCCCTGGGGCCAGG-GCAGAGACCCCTCCCGCTGCACATCCCACTGCTTGGGCACCT-GGCCCCCCGCAGGCCCGCCCGCTGCTCCCGCCTCCCGCGGAGGGT-------CGGGGGCTGGGGACTGGGGAAGGGTACCCCAAATATCTCTGGGTGGCGATCGCTCAGCCCCTCCAGTCCATCCAGCTCCTGCATTGTCCGTCCTACCAATAACCTCTCACTTGCTATTCTCAGCCCCTTCCTGCCTTGTCTCCCTGTGAGACCTACTGGAA-CCCCCCACCTTTCACACCACTGACCAGCTGAAGGAAAA--CGCAGAGGCACAGACTAGGCCACGTG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   362332 965 -  91754291 tttgatttgcgtttctctaatgatcagtgatgatgagcttctgttcatatgtttgttggctgcataaatgtg-----ttgagaagtgtctgttcatatgctttgcacactttctgatgggattgtttgttttcttcttgtaaatttacttaagctccttataaattctggatattagccctttgtcagatggatagattgtaaaaattttctcccattctgtaggttgcctgttcactctggctggtcttatgcagaaaactgaaactagaccccttcctgacaccttatacaaaaattaactcaagatggattaaaaacttaaacataagacctaaaaccagaaaaactctagaagaaaacctaggcaataccactcaggacataggcatgggcaaagac-ttcatgactaaaacaccaaaagcaatggtaacaaaagccaaaactcacaaaagggatctaattacactaaagagcttctgcacagcaTGACTGTATTTCAATGCATGTTTACCACCGAACTCTTAATTCTCCACCACTGCCCTGTGTCATTAGGATCCCAGCTCCGCAGCCATTCCTCTAGTTGGGCCTGGGTCAGCTCTGGGATGCCGC---GG--GGCCGGTGGGCTGCGGAGGGGCCGGTGGGCTGCGGAGGGGCCAGA-GCGGAGGCCCCTCCCACTCCACATCCCACTGCCTGGGCGTCT-GGCCCCCGGCAGGCCCGCCCGCTGCTCCCGCCTCCCGTGGAGGGT-------CGGGGGCTGGGGACTGGGGAAGGGTACCCCAAATATCTCTGGGTGGCGATCGCTCAGCCCCTCCAGTCCATCCAGCTCCTGCATTGTCCGTCCTACCAATACCCTCTCACTTGCTATTCTCAGCCCCTTCCTGCCTTGTCTCCCTGTGAGACCTGCTGGAA-CCCCCCACCTTTCACACCACTGACCAGCTGGAGGAAAA--CGCAGAGGCCCAGACTAGGCCACGTG
i chlSab2.chr15                C 0 I 8
s calJac3.chr17                   852336 930 -  74750902 tgtgatttgcatttctctaatgaccagtgatgatgagcttttcttcatatgtttgttggctgcataaatgtcttcttttgaaaggtgtctgttcatatcctttgcccactttctgatgggatcgtttgtttttttcttgtaaatttgtttaagttccttgtagattctggatattagacctttgtcagatggatagactgc--aagttttctatcattctgtaggttgcctgttcactctggctagtcatatgcagaaaactgaaactagatccctttcttacaccttatacaaaaattaactcaagatggattaaagatttaaacgtaagacctaaaaccacaaaaatcctagaagaaaagctaggcaataccattcaggacgtaggcatgggcaaagac-ttcatgactaaaacaccaaaagcaatggcatcaaaagccaaa-------------atctaattaaactcaagagct--------GCATGACTATATTTCAGTGCACATTTACCAGTG---CCTTAGAGCTCCACC-CCATCCTGTGTCAGTGGGATCCCAACTCTGCAGCCCTTCCTCTA-TTAGGCCTGG------TTTGGGATGCCAA---GGCCAGCTGGTGGGTGGCAGAGGCACCGGTGGG--GACCCAGGGCGGGGCGCGGAGAGCCTTCACGCT-CACATTCCACCGCCTGGGCGCCCAGGCTCCCCTCAGGCCCACCTGCTGCTCCCACCTCCTG-GGATGGC---------GGGGCTGGGG-TTGGGGCTGGGTACCCCAAATATCTCTCAGTGGTGATCACTCAGCCCCTCCAATCCATCCAGCTCCTGCATTGTCCATCCTACCAATAACTTCTCGCTTGCTATTCTCAGCCCCTTCCTGCACTGTCTCCCTGTCAGACCTTCTAGAAACCCACAAACTCTCACACCGCTGACCTGCTGGAGAAAAA--CGCA----CCAAGATTAGGTCAGGCT
i calJac3.chr17                C 0 C 0
e nomLeu3.chr11                120806746  10 + 123690457 I

a score=10051.000000
s hg38.chr3_KI270935v1_alt         67611 49 +    197351 GGAGTCCTGATCTCTAACCCCAGCCGGTCTCAGGCCTTGCCGAGGCAAC
s panTro4.chr3_GL389630_random     29453 49 +    103936 CGAGTCCTGATCTCTAACCGCAGCCGGTCTCAGGCCTTGCCGAGGCAAC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199713741 49 + 202140232 cgagtcctgatctctaaccccagctggtctcaggccttgccgaggcaac
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr2                     14097  8 + 192460366 ------------------CCTAACTG-----------------------
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     12865  8 - 187378091 ------------------CCTAACTG-----------------------
i papAnu2.chr2                 C 0 C 0
s calJac3.chr17                   853266 46 -  74750902 CAAGTCCT-ACATCTAACCCCAGCAGGTCTCAGGCCTTGGTGAGGCA--
i calJac3.chr17                C 0 C 0
e rheMac3.chr2                      5423  8 - 192599291 I
e chlSab2.chr15                   363297  8 -  91754291 I
e nomLeu3.chr11                120806746 10 + 123690457 I

a score=1651523.000000
s hg38.chr3_KI270935v1_alt         67660 804 +    197351 GCTGCTTCCCCAGACACtctccctttcccattc----ttttttttttttttt-----------------------tttgagttggagtctcgctttgcca-cccagtctg-------gagtgcagcggcgcgatctcagctcactgcaccctccacctcctgggttcaa-------------------gcgattctcctgcctcagcctcccaagtagctgggattacaggcacacaccaccatgcctggctaatttttgtatttttagtagagatggggttacaccatgttggccaggctggtctcaaatgcccgacttcaggtgatccacccgcctcgagctcccaaagtgctgggattacaggcgtgagccatcgcgcctgcctttactttcccattcttaacgcctcccgtttcagacctgtccccttttcccc-gcatttctgactgtcacggcacatcacaaccagcagacagggcttcccctatttcacaggagaaatagaagccatcagatgggacctccttcaaagtcctgccaccaaacctcagcatgtacctggacccacatgtatcctcttttcctttgggattgaattagagaggtgccgctcgaaacccgctcctgggtgggagtcttggctctatcagttatgcctctattctgtatgtttaacctcgccctc------------gtaggggcataaaac--agcattt-aaacaggatcaag-ctttccattttaaaactccatacactcccttaatttcatctcctcctccacctactgccccatgtctctccctcttcctggctaaacgtctcaaaaaagtggatacactttctgtcAACtcctaaacactcctcac
s panTro4.chr3_GL389630_random     29502 802 +    103936 GCTGCTTCCCCAGacactctccctttcccattc------ttttttttttttt-----------------------tttgagatggagtctcgctttgcca-cccagtctg-------gagtgcagcggcgcgatctcagctcactgcagcctccacctcctgggttcaa-------------------gcgattctcctgcctcagcctcccaagtagctgggattacaggcacacaccaccacgcccggctaatttttgtatttttagtagagatggggtttcaccatgttggcctggctggtctcaaatgcccaacctcaggtgatccacccgcctcgggctcccaaagtgctgggattacaggcgtgagccatggtgcctgcccttactttcccattcttaacgcctcccgtttcagacctgtccccttttcccc-gcatttctgactgtcacggcacatcacaaccagcagacagggcttcccctatttcacaggagaaatagaagccatcagatgggacctccttcaaagtcctgcccccaaacctcagcatgtacctggacccacatgtatcctcttttcctttgggattgaattagagaggtgccgctcgaaacccgctcctgggtgggggtcttggctctatcagttatgcctctattctgtatgtttaacctcaccctc------------gtaggggcataaaac--agcattt-aaacaggatcaag-ctttccattttaaaactccatacactcccttaatttcatctcctcctccacctactgccccatgtctctccctcttcgtggctaaacgtctcaaaaaagtggatacactttctgtcaactcctaaacactcctcac
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199713790 809 + 202140232 gctgctttcctagacactctcactttcccattctttttttttttttttttct-----------------------tttgagatggtgtctctctttgcca-cccaggctg-------gagtgcagtggcatgatctcagctcactgcaccctccacctcctggattcaa-------------------gcgattctcctgcctcagcctcccaagtagctgggattacaggtgcacaccaccatgcctggctaatttttgtatttttagtagagatgggatttcaccatgttggccaggctagtctcaaatgcccaacctcaggtgatccacccccctcaggctcccaaagtgctgggattacaggagtgagccattgcgcttgccctcactttcccattcttaacacctaccatttcagacctgtccgcttttcccctgcatttctaactgtcacaacacatcacaaccagcagacagggctgcccctatttcacaggagacatagaagccatcagatgggacctccttcaaagtcctgccaccaaacctcagcatggacctggacccacgtgtatcctcttttcctttgggattgaattagagaggtgccgctcgaaacccgctcctgggtgggcgtcttggctccatcagttatgcctctattctgtatgtttaacctcgccctc------------gtaggggcataaaac--agcgttt-aaacaggatcaat-ctttccattttaaaactccatacactcccttaatttcacctcctcctccacctactgccccatgtctcttcctcttcgtggctaaacttctcaaaaaagtggatgcactttcagtcaactcctaaacactcctcac
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                      5431 839 - 192599291 GCTGCTTCCCCAGACGCTCTcactttcccattcttttttttttttttttttttttttgggnnnnnnnnnnttttttttgagatggagtctcgctctgcca-cccaggctg-------gagtgcagtggtgagatctcagctcattgcaacctccaccagctgggttcaactaattctcctgcctcagcgcaattctcctgcctcagcctcccaagtagctgggattacacgcacacaccaccatgcccggctaggttttgtatttttagtagagatggggtttcaccatgttagccaggctggtctcaaactcccaacctcaggtgatctgcctgcctcgggcttccgaagtgctgggattacaggcgtgagccaccgtgcccggcctcacttccccattcttaaggcctcccgtttcagacctgcccccttttcccc-gcattt----ctgtcacggcacatcacaaccagcagacagggcttccc--gtttcacaggagaaatagaagccatcggacgggacctccttcaaactcctgccaccaaagctcagcatgtccctggacccacgtgtttcctcttttccttcgggattgaatt----aggtgccgcttgaaacccgctcctgggt-ggggtcttggctctatcagttatgcctctattctgtatgtttcacctcgccctt------------gtaggggcataaaac--agcgtttaaaacaggatcaag-cttcccattttaaaactcc-cacactcccttaatttcatctccctctccacctactgccgcctgtctcttcctcttcatggctgaacttctcaaaaaagtggatacactttctgtcaactcctaaacgctcctcac
i rheMac3.chr2                 I 8 C 0
s macFas5.chr2                     14105 831 + 192460366 GCTGCTTCCCCAGATGCTCTCACTTTCCCATTCtttttttttttttttttttttttt--------tttttttttttttgagatggagtctcgctctgcca-cccaggctg-------gagtgcagtggtgagatctcagctcattgcaacctccaccagctgggttcaactaattctcctgcctcagcgcaattctcctgcctcagcctcccaagtagctgggattacacgcacacaccaccatgcccggctaggttttgtatttttagtagagatggggtttcaccatgttagccaggctggtctcaaactcccaacctcaggtgatccgcctgcctcgggcttccgaagtgctgggattacaggcgtgagccactgtgcccggcctcacttccccattcttaaggcctcccgtttcagacctgcccccttttcccc-gcattt----ctgtcacggcacatcacaaccagcagacagggcttccc--gtttcacaggagaaatagaagccatcggacgggacctccttcaaactcctgccaccaaagctcagcatgtccctggacccacgtgtttcctcttttccttcGGGATTGAATT----AGGTGCCGCTTGAAACCCGCTCCTGGGT-GGGGTCTTGGCTCTATCAGTTATGCCTCTATTCTGTATGTTTCACCTCGCCCTT------------GTAGGGGCATAAAAC--AGCGTTTAAAACAGGATCAAG-CTtcccattttaaaactcc-cacgctcccttaatttcatctccctctccacctactgccgcctgtctcttcctcttcatggctgaacttctcaaaaaagtggatacactttctgtcaactcctaaacgctcctcac
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     12873 814 - 187378091 GCTGCTTCCCCAGACGCTCtcacttt-ccattctttttttttttttttttttttttt------------------tttgaggtagagacTCGCTCTgccaccccaggctg-------gagtgcagtggtgagatctcagctcattgcaacctccacctgctgggttcaactaattctcctgcctcagcgcgattctcctg----------ccaagtagctgggattacgcgcacacaccaccatgcccggctaggttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcaaactcccaacctcaggtgatccacctgcctcgggcttccgaagtgctgggattacaggcgtgagccaccatgcccggcctcacttCCCCATTCTTAAGGCCTCCCGTTTCAGACCTGCCCCCTTTTCCCC-GCATTT----CTGTCACGGCACATCACAACCAGCAGACAGGGCTTCCC--GTTTCACAGGAGAAATAGAAGCCATCAGACGGGACCTCCTTCAAACTCCTGCCACCAAAGCTCAGCATGTCCTTGGACCCACgtgtttcctcttttccttcgGGATTGAATT----AGGTGCCGCTTGAAACCCGCTTCTGGGTGGGGGTCTAGGCTCTATCAGTTATGCCTCTATTCTGTATGTTTCACCTCGCCCTT------------GTAGGGGCATAAAACAGAGCGTTTAAAACAGGATCAAG-CTTCCCATTTTAAAACTCC-CACACTCCCTTAATTTCATCTCCCCCTCCACCTACTGCCgcctgtctcttcctcttcatgGCTGAACTTCTCAAAAAAGTGGATACACTTTCTGTCAACTCCTAAATGCTCCTCAC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   363305 817 -  91754291 GCTGCTTCCCCGGACACTCTCACTTTCCCAttcttttttttttttttttt-------------------------tttgagatggagtctcgctctgcca-cccaggctg-------gagtgcggtggtgcgatctcagctcactgcagcctccacctgctgggttcaactaattctcctgcctctgcgcgattctcctgcctcagcctcccaagtagctgggattacacgcacacaccaccatgcccggctagtttttgtatttttagtagagacagggtttcaccatgttggccaggctggtctcaaacgcccaacctcaggtgatccacccgcctcgggctcccaaagtgctgggattacaggcatgagcgaccgcgcccggcctcacttccccattcttaaggcctcccatttcagacctgcccccttttccct-gcattt----ctgttatggcacatcacaaccagcagacaggacttccc--gtttcacaggagaaatagaagccatcggacgggacctccttcaaactcctgccaccaaagctcagcatctccctggacccacgtgtttcctcttttcctCTGGGATTGAATT----AGGTGCCGCTTGAAACCCGCTTCTAGGTGGGGGTCTTGGCTCTGTCAGTTATGCCTCTATTCTGTATGTTTAACCTCGCCCTT------------GTAGGGGCATAAAACAGAGTGTTTAAAACAGGATCGAG-CTtcccattttaaaactccacacactcccttaacttcatctccccc-cgacctactgccgcctgcctcttcctcttcatgactgaacttctcaaaaaagtggatacactttctgtcaactcctaaacgctcctcac
i chlSab2.chr15                I 8 C 0
s calJac3.chr17                   853312 763 -  74750902 -------------------------------------------------------------------------------agacggagtgtcactctgttg-ctcaggttggagtgcagagtgcagtggcgcgatctcacctcactgcagcctctgcctcccgagttcaa-------------------gcgattttcctccctcagcccccagaatagctgggattacagacacccgccatcatgcctgactaatttttgtatttttc-tagagatgggatttcaccatgttggccaggctggtcttgaactcctgacctcaggtgatctacctgcctcggcctcccaaagcgctgggattacagatgcgagccaccccgctcgaccT--ctttcccattcttaacg------gtttcagacctgtccccttctctcc-acatccctgactgtcactgcacatcacaaccagcacagagggcctcccatgtttcacaggagaagtagaagctaccggatgggaccaccttcaaagtcctgccaccaaacctcagcg-gtacatggacccacatgtatcctttttttcct-gtgattGAATTAGAGTGATGCTGGTTGAAA-CCACTCCTGGGTGGGGGTCTTGGCTCTATCAGTTATGTCTCCATTCTGCATATTTAACCTCGCCCTCAAGGGAAAGGGAGCAGGGACATAAAACAGAGCATTTAAAACAGGATCAAGtttttccattttaaaactccatacgttcccttaatttcatctcctcctgcacctacggccccatgtctgttcctcttcatggctaaacttctcacaaaagcagatacactttctgtcaactcctaaacactcctcac
i calJac3.chr17                C 0 C 0
e nomLeu3.chr11                120806746  10 + 123690457 I

a score=1956667.000000
s hg38.chr3_KI270935v1_alt         68464 694 +    197351 gctcatttggcctctgctcctcccttcctcctcccacttcattggaactacttctgccaaagaggatccctgagtcagcctgactggtaaccccaatggactctactcaatatgcaacatccttcacttcttagcagagtttgaaacagcctgactctcctcttctggcaacattcttttccttggtttggggacgctgtactgttctggttttgcccctccctcCGAGCA------------------------------------TTCCTTGTGTT----Tgtcctggcccattttctcctctcattctacatcctctccccggggattttagcttctctcacggctcaggttaccatctccatagtgatgactatcaaattctgtacctcatttccagaggctcctgacagacttgcttggtcaatatactactggacatattcatgagactgtctcacacaggcatctcgaacccagtgtgtcccac--aattctcttcctatccatgcctgttcctcttccactgcctcatatgtcggtgactg--tccaccttctctctctctcccc-----------ctctccgtttggctcataggaaaagtgtcaccaagggctgtaagtgcagatttctaattatcccctaaatttgaacatttttcctctcgaaagtgtatggccattaccctattacagatcaacatcttcaatcactggaatgatggcaataatctaattgggttc
s panTro4.chr3_GL389630_random     30304 722 +    103936 gctcacttggcctctgcttctaccttcctcctcccacttcattggaactacttctgccaaagaggatccctgagtcatcctgactggtaaccccaatggactctactcaatatgcaacatccttcacttcttagcagagtttgaaacagcctgactctcctcttctggcaacattcttttccttggtttggggacgctgtactgttctggttttgcccctccctctgagca---ccccctcctgtgttcagccctt-tatgtcggggttccttgtgtt----tgtcctggcccattttctcctctcattctacatcctctccccggggattttagcttctctcacggctcaggttaccatctccatagtgatgactatcaaattctgtacctcatttccagaggctcctgacagacttgattggtcaatatattactggacatattcatgagactgtctcacacaggcatctcgaacccaatgtgtcccacataattctctt------catgcctgttcctcttccactgcctcatacgtcggtgactg--tccaccttctctctctctcccc-----------ctctccatttggctcataggaaaagtgtcaccaagggctgtaagtgcagatttctaattaccccctaaatttgaacatttttcccctcgaaagtgtatggccattaccctattacagatcaacatcttctatcactcgaatgatggcagtaatctaattgggttc
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199714599 726 + 202140232 gctcactcgacctttgcccctgccttcctcctcccacttcattggaactgcttctgccaaagaggat--ctgagacatcctgactggtaaccccaatggactctactcaatatgcaacatccttcacttcttagcagagtttgaaacagcctgactctcctctcctggcaacattcttttccttggtttggggatgctgtactgttctggttctgcccctccctctgagca---ccccctcctctgttcagccctt-tatgtcggcattccttgtgtt----tgtcctggcccattttctcctctcattctacatcctctccccggggattttagcttctctcatgactcgggttaccagctccatagtgatgactaccaaattctgtacctcatttccggaggctcctgacagacttgcttgctcaatacattactggacatattcatgagactgactcacacaggcatctcgaacccaaggtgtcccacataattctcttcctgtccatgcctgttcctcttccactgcctcatatgtcggtgactg--tccaccttctctctctctcccc-----------ctctccatttggctcataggaaaagtgtcaccaagggctggaagtgcagatttctaattatcccctaaatttgaacatttttcccctctaaagggtatggccattaccctattacagatcaacatcttctatcactcaaatgatggcaataatctaattgggttc
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120806756 722 + 123690457 GCTCACTTGGCCTTTGCTCCTACCTTCCTCCTCCCACTTCATTGGAACTACTTCTGCCAAAGAGGATCCCTGAAACATCCTGACTGGTAACCCCAGTGGACTCTACTCGATATGCAACGTCCTTCACTTCTTAGCAGAGTTTGAAACAGCCTGactctcctcttctggcaacattcttttccttggtgcggggatgct-tactgttctggttttgcccctccctctgagca---ccccctcctctgttcagccctt-tatgtcggcattccttgtgtt----tgtcctggcccattttctc--ctcgttctacatcctctgcccggggattttagcttctctcatggctcggggtaccatctccacagtgatgactatcaaattctgtacctcatttccggaggctcctgacagacttgcttgctcaatatattactagacatattcatgagactg--tcacacaggcgtgtcgaacccaatgtgtcccacataattctcttcctgtccat-cctgttcctcttccactgcctcatacgtcggtgactg--tccaccttctctctctctcccc-----------ctctctgtttggctcataggaaaagtgtcaccacgggctgtaagtgcagatttctaattatcccctaaatttgaacatttttcccctctaaagtgtatggccattaccctattacagatcaacatcttctatcactcgaatgatggcaataatctaattgggttc
i nomLeu3.chr11                I 10 C 0
s rheMac3.chr2                      6270 720 - 192599291 actcccttggcctctgctcctaccttcgtcctcccacttcacgggaactacttgtgccaaagaggatccctgagacgtcctgactggtaaccccagtggactctactcaacacgccacgtccttcacttctt---agagtttgaaacagcctgaccctcctcttccggcgacaatcttttccttggtttgggga--ctgtacatctctggttctg-ccctccctctgagcg---ccccctcctctgttcagccctt-tatgtcggcattgcttgtgtc----tgtcctggcccattttctcctctcgttctacatc--ctccccggggactttagctcctctcatggctcgggtcaccagctccgcagtgatgacaaccaaattctgtacctcatttcccgaggctcctgacggactcgcctggtcaatacgttattggacacattcatgagactgtctcacacaggcctctcaaacccagtgtgtcccaggtaattctcgtcctgtccgtgcctgttcctcttccactgcctcctacgtcagtggctg--tccaccttctctctctctccac-----------ctctacatttggctcataggaaaagtgtcaccaagggctgtgggtgcagatttctcattatcccctaagtttgaacatttttcccctctaaagtgtatgaccattaccctattacagatcaacatattctatcactcgaatgactgcaataatctaactgggttc
i rheMac3.chr2                 C 0 I 2564
s macFas5.chr2                     14936 720 + 192460366 actcccttggcctctgctcctaccttcctcctcccacttcacgggaactacttgtgccaaagaggatccctgagacgtcctgactggtaaccccagtggactctactcaacacgccacgtccttcacttctt---agagtttgaaacagcctgaccctcctcttccggcgacaatcttttccttggtttgggga--ctgtacatctctggttctg-ccctccctctgagcg---ccccctcctctgttcagccctt-tatgtcggcattgcttgtgtc----tgtcctggcccattttctcctctcgttctacatc--ctccccggggactttagctcctctcatggctcgggtcaccagctccgcagtgatgacaaccaaattctgtacctcatttcccgaggctcctgacggactcgcctggtcaatacgttactggacacattcatgagactgtctcacacaggcctctcaaacccagtgtgtcccaggtaattctcttcctgtccgtgcctgttcctcttccactgcctcctacgtcagtggctg--tccgccttctctctctctccac-----------ctctacatttggctcataggaaaagtgtcaccaagggctgtgggtgcagatttctcattatcccctaagtttgaacatttttcccctctaaagtgtatgaccattaccctattacagatcaacatcttctatcactcgaatgactgcaataatctaactgggttc
i macFas5.chr2                 C 0 I 2558
s papAnu2.chr2                     13687 723 - 187378091 GCTCCCTTGGCCTCTGCTCCTACCTTCCTCCTCCCACTTCACGGGAACCACTTCTGCCAAAGAGGATCCCTGAGACGTCCTGACTGGTAACCCCAATGGACTCTACTGAACACACCACGTCCTTCGCTTCTTAGCAGAGTTTGAAACAGCCTGACCCTCCTCTTCCGGTGACAATCTTTTCCTTGGTTTGGGGA--CTGTACATCTCTGGTTCTG-CCCTCCCTCTGAGCG---CCCCCTCCTCTGTTCAGCCCTT-TATGTCCGCATTGCTTGTGTC----TGTCCTGGCCCATTTTCTCCTCTCGTTCTACATC--CTCCCCGGGGACTTTAGCTCCTCTCATGGCTCAGGTCACCAGCTCCGCAGTGATGACAACCAAATTCTGTACCTCATTTCCCGAGGCTCCTGACGGACTCGCCTGGTCAATACGTTACTGGACATATTCATGAGACTGTCTCACGCAGGCCTCTCAAACCCAGTGTGTCCCAGGTAATTCTCTTCCTGTCTGTGCCTGTTCCTCTTCCACTGCCTCCTACGTCAGTGGCTG--Tccgccttctctctctctccct-----------ctctatatTTGGCTCATAGGAAAAGTGTCACCAAGGGCTGTGGGTGCAGATTTCTCATTATCCCCTAAGTGTGAACATTTTCCCCCTCTAAAGTGTATGGCCATTACCCTATTACAGATCAACATCTTCTATCACTCGAATGACGGCAATAATCTAACTGGGTTC
i papAnu2.chr2                 C 0 I 2538
s chlSab2.chr15                   364122 723 -  91754291 gctccctgggcctctgctcccaccttcctcctcccacttcactggaacaacttctgccaaagtggatccctgagacgtcctgactggtaaccccaatggactctactcaacacgccacgtccttcacttcgtagcagagttggaaacagcctgaccctcctcttccggcgacattcttttccttggtttgggga--ctgtacatctctggttctg-ccctccctctgagcg---ccccctcctctgttcagccctt-tatgtcggcattgcttgtgtc----tgtcctggcccattttctcctctcattcttcatcctctccccggggactttagctcctctcatggctcgggtcaccagctccgcagtgatgactaccaaattctgtacctcatttcccgaggctcctgacagacttgcctggtcgatacgttactggacatattcacgagactgtctcacacaggcctgtcaaacccagtgtgtcccagataattctcttcctgtccgtgcctgttcctcgtccactgccccatACGTCAGTGGCTG--TCCGCCTTCTCTCTCTGCCC-------------CTCTACATTTGGCTCATAGGAAAAGTGTCACCAAGGGCTGTGGGTGCAGATTTATCATtatcccctaagtttgaacatttttcccctctaaagtgtatggccattaccctagtgcagatcaacatcttctatcactcgaatgacggcaataatctaactgggttc
i chlSab2.chr15                C 0 I 2237
s calJac3.chr17                   854075 730 -  74750902 gctcacttggcctctgcccctaccttcccactcccacttcactggaactgcttctgccaaaggggatcctggtagcatgaggactggtaaccccagcaggctctgctccatatgcaacttccttcacttcttagcagagtttggagcag-ctgactctcctcttcttgagacactcttttccttgattccgggacactgtacttttctggtttcgcccctccctctgagcttcccctcctcctctgtccagcccttaaatgttggcattccttgtgtctgtgtgtcctgggccatttcctcctctcagtctacatactctccccagggatgttagctcctcttaaggctccgcttaccagctccatagtgatcactgccaaatgctgtacttcatttcc-gatgctcctgtcagact----------------tactggacatattcatgaaactgtctcacacaggcatctcgaacccaatgtgtcccaaataattctcttcctgtccatgcctcttcctcttccactgcctcatatgtcggtgactgtatccaccttctctctctcccccctggcttttttttttttttttttgctcataagaaaagtatcaccaagtgctgtaagtgcagatttctaattatcccctaaatttaaacattttccccc-caaaaatgtatggtcattaccctattacagatcaacatcatccatcacttgaatgatggcaataatctaattgggttc
i calJac3.chr17                C 0 C 0

a score=421754.000000
s hg38.chr3_KI270935v1_alt         69158 551 +    197351 attttatcctctatc-taacaatgacaactcattgcctacacagcaggtagaagga-----------------gtttgttttcagaattgccctctgacctatttaagac-gctcagatattccctgaggctccttggcctggccacaaaggccctacacattctggctgcttcctcctttccagcatcctctctcacgtctcctctcctcagttccaccctcaggaggcaccagaattcctcacttctttgactacaaggcaccgtcttactcccaagaccAGTGAATCCGAAGGTGGACCACCAgctgaggga-ctagattccagactgaatagaacaactttccctgtctctccacataaagtgtgtttgtttttcctcttacaggtttccttaatgacaacaaaaaagggagtaatcct-acccacT-GTAAGAGTCATGACTCTTGAT--TGCAGCTGACAGAAACTCATGACAGCCTGCTTTAGATGAAGGGGGAGAGAAGGACTGGAAGAATCTTGGAGTTGGGAATGTCACACGTAATTGAAGGAAGAACAAGAAAACTATAGTAAA
s panTro4.chr3_GL389630_random     31026 551 +    103936 attttatcctctatc-taacaatgacaactcattgtctacacagcaggtagaagga-----------------gtttgttttcagaattgccctctgacctatttaagac-gctcagatattccctgaggctccttggcatggccacaaaggccctacacattctggctgcttcctcctttccagcttcctctctcacgtctcctctcctcaattccaccctcaggaggtactagaattcctcacttctttgactacaaggcaccgtcttactcccaagaccAGTGAATCCGAAGGTGGACCACCAgctgaggga-ctagattccagactgaatagaacaactttccctgtctctccacataaagtgtgtttgtttttcctcttacaggtttccttaacgacaacaaaaaagggagtaatcct-acctacT-GTAAGAGTCATGACTCTTGAT--TGCAGCTGACAGAAACTCATGACAGCCTGGTTTAGATAAAGGGGGAGAGAAGGACTGGAAGAATCTTGGAGTTGGGAATGTCGCACGTAATTGAAGGAAGAACAAGAAAACTATAGTAAA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199715325 552 + 202140232 attttatcccctatcttaccagtgacaactcattgtctacacagcaggtagaagga-----------------atttgttttcagaattgccatctgacctatttaagac-gctcagatattccctgagggtccttggcatggccataaaggccctacgcattctggctgcatcctcctttccagcatcctctctcatgtctcctctcctcaattccaccctcaggaggtactagaagtcctcacttctttgactacaaggcactgtcttactcccaagaccAGTGAATCCGAAGGTGGCCCGCCAGCTGAGGGA-CTAGATTCCAGACTGAATAGAACAACTTTTCCTGTCTTTCCACATGAAGTGCGGTTGTTTTTCTTCTTACAGATTTCCTTAATGACAACAAAAAAGGGAGTAATCCT-ACCTACT-GTAAAAGTCATGACTCTTGAT--TGCAGCTGACAGAAACTCACGACAGCCTGGTTTAGATAAAGGGGGAGAGAAGGAATGGAAGAATCTTGGCGTTGGGAATGTCGCACGTAATTGAAGGAAGAACAAGAAAACTTTAGGAAA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120807478 550 + 123690457 gttttatcccctatcttaccaaagacaactcattgtctacacagcaggtagaagga-----------------atttgttttcagaattgccatctgacctatttaagat-gctcagatattccctgaggctccttggcatggccacaaaggccctacacattctggctgcatcctcctttccagcatcctctctcacgtctcctctcctcagttccaccctcaggagctactaaaattcctcacttctttgactacgaggcac--tcttactcccaagaccAGTGAATCCGAAGGTGgcccgccagctgaggga-ctagattccagattgaatagaacaactttccctgtctctccacatgaagtgcgtttgtttttcctcttacagatttccttaacgacaacaaaaaagggagtaatcct-acctact-gtcaGagtcatgactcttgat--tgcagctgacagaaacccatgacagcctggtttagataaaGGGGGAGAGAAGGACTGGAAGAATCTTGGAGTTGGGAATATCACACATAATTGAAGGAAGAACAAGAAAACTGTAGGAAA
i nomLeu3.chr11                C 0 C 0
s calJac3.chr17                   854805 573 -  74750902 attatgtcccctatcttgccaattacaactcattctctacaccctggatagaaggattttttttttttttttttttttttttcagaattgccgtttgatctatttaagactgctcagatattccctgatgctccttggcatggccaaaaaggccctacacattctggccccatcttcctttccactgtcctccctcacttctcttctcctcaattcttccctcaggagatactagaatttcttaccttcttgattaccaggcactgtcttacttccaagaccACTGAATCCGAGGGT-GCCTTCTAGCTCAGGGACCTAGATTTTAGACTCAATATAACAACTTTTCCTGTCTCTCCACATGAGGTGCATTTGTTTTTCCTCTTAAAGGTTTCCTTAAAAACAACAAAAAAGGTAGTAAAATTAACCTGCTGGTAAGAGTCGTGACTCTTTTTGATGCAGCTGACGGAAACTCATGACAATCTGGTTTAGATAAAGGGGGAGAGGA-TATTGGAAGAATCTTTGCGTTGGGAATATTGCACATAATTGAAGGACGAACAAGAAAACTATAGGAAA
i calJac3.chr17                C 0 C 0
e rheMac3.chr2                      6990 2564 - 192599291 I
e chlSab2.chr15                   364845 2237 -  91754291 I
e macFas5.chr2                     15656 2558 + 192460366 I
e papAnu2.chr2                     14410 2538 - 187378091 I

a score=8937.000000
s hg38.chr3_KI270935v1_alt         69709 16 +    197351 GAACCCTGGGGTGGTG
s panTro4.chr3_GL389630_random     31577 16 +    103936 GAACCCTGGGGTGGTG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199715877 16 + 202140232 GAACCCTGAGGTGGTG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120808028 16 + 123690457 GAACCCTGGGGTGGTG
i nomLeu3.chr11                C 0 C 0
e rheMac3.chr2                      6990 2564 - 192599291 I
e calJac3.chr17                   855378  0 -  74750902 C
e chlSab2.chr15                   364845 2237 -  91754291 I
e macFas5.chr2                     15656 2558 + 192460366 I
e papAnu2.chr2                     14410 2538 - 187378091 I

a score=6748.000000
s hg38.chr3_KI270935v1_alt         69725 25 +    197351 ATGTAGTCATGGGCCAAGTGTCCTG
s panTro4.chr3_GL389630_random     31593 25 +    103936 ATGTAGTCATGGGCCAAGTGTCCTG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199715893 25 + 202140232 ATGTATTCATGGGCCAAGTGTCCTG
i ponAbe2.chr3                 C 0 C 0
e rheMac3.chr2                      6990 2564 - 192599291 I
e calJac3.chr17                   855378  0 -  74750902 C
e chlSab2.chr15                   364845 2237 -  91754291 I
e macFas5.chr2                     15656 2558 + 192460366 I
e papAnu2.chr2                     14410 2538 - 187378091 I
e nomLeu3.chr11                120808044  0 + 123690457 C

a score=10686.000000
s hg38.chr3_KI270935v1_alt         69750 21 +    197351 GAACCCTGGGGTGGTGATGTA
s panTro4.chr3_GL389630_random     31618 21 +    103936 GAACCCTGGGGTGGTGATGTA
i panTro4.chr3_GL389630_random C 0 T 62
s ponAbe2.chr3                 199715918 21 + 202140232 GAACCCTGGGGTGGTGTTGTA
i ponAbe2.chr3                 C 0 C 0
s calJac3.chr17                   855378 21 -  74750902 GAACCCTGGGGTGGTAATATA
i calJac3.chr17                C 0 C 0
e rheMac3.chr2                      6990 2564 - 192599291 I
e chlSab2.chr15                   364845 2237 -  91754291 I
e macFas5.chr2                     15656 2558 + 192460366 I
e papAnu2.chr2                     14410 2538 - 187378091 I
e nomLeu3.chr11                120808044  0 + 123690457 C

a score=5243.000000
s hg38.chr3_KI270935v1_alt         69771 20 +    197351 GTTGTGGGCCAAGTGTCCTG
s ponAbe2.chr3                 199715939 20 + 202140232 GTCGTGGGCCAAGTGTCCTG
i ponAbe2.chr3                 C 0 C 0
s calJac3.chr17                   855399 20 -  74750902 GTAGTGGGCCAAGTGTCCTG
i calJac3.chr17                C 0 C 0
e rheMac3.chr2                      6990 2564 - 192599291 I
e chlSab2.chr15                   364845 2237 -  91754291 I
e macFas5.chr2                     15656 2558 + 192460366 I
e papAnu2.chr2                     14410 2538 - 187378091 I
e nomLeu3.chr11                120808044  0 + 123690457 C
e panTro4.chr3_GL389630_random     31639 62 +    103936 T

a score=300.000000
s hg38.chr3_KI270935v1_alt         69791 1 +    197351 G
s panTro4.chr3_GL389630_random     31577 1 +    103936 G
i panTro4.chr3_GL389630_random T 62 C 0
s calJac3.chr17                   855419 1 -  74750902 G
i calJac3.chr17                C 0 T 42
e rheMac3.chr2                      6990 2564 - 192599291 I
e chlSab2.chr15                   364845 2237 -  91754291 I
e macFas5.chr2                     15656 2558 + 192460366 I
e papAnu2.chr2                     14410 2538 - 187378091 I
e ponAbe2.chr3                 199715959 0 + 202140232 C
e nomLeu3.chr11                120808044 0 + 123690457 C

a score=3847.000000
s hg38.chr3_KI270935v1_alt         69792 40 +    197351 AACCCTGGGGTGGTGATGTAGTCATGGGCCAAGTGTCCTG
s panTro4.chr3_GL389630_random     31578 40 +    103936 AACCCTGGGGTGGTGATGTAGTCATGGGCCAAGTGTCCTG
i panTro4.chr3_GL389630_random C 0 C 0
e rheMac3.chr2                      6990 2564 - 192599291 I
e calJac3.chr17                   855420 42 -  74750902 T
e chlSab2.chr15                   364845 2237 -  91754291 I
e macFas5.chr2                     15656 2558 + 192460366 I
e papAnu2.chr2                     14410 2538 - 187378091 I
e ponAbe2.chr3                 199715959  0 + 202140232 C
e nomLeu3.chr11                120808044  0 + 123690457 C

a score=16346.000000
s hg38.chr3_KI270935v1_alt         69832 33 +    197351 GAACCCTGGGGTGGTGATGTAGTTGTGGGCCAA
s panTro4.chr3_GL389630_random     31618 33 +    103936 GAACCCTGGGGTGGTGATGTAGTTGTGGGCCAA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199715959 33 + 202140232 GAACCCTGGGGTGGTGAAGTAATCGTGGGCCAA
i ponAbe2.chr3                 C 0 C 0
s calJac3.chr17                   855378 33 -  74750902 GAACCCTGGGGTGGTAATATAGTAGTGGGCCAA
i calJac3.chr17                T 42 C 0
e rheMac3.chr2                      6990 2564 - 192599291 I
e chlSab2.chr15                   364845 2237 -  91754291 I
e macFas5.chr2                     15656 2558 + 192460366 I
e papAnu2.chr2                     14410 2538 - 187378091 I
e nomLeu3.chr11                120808044  0 + 123690457 C

a score=74032.000000
s hg38.chr3_KI270935v1_alt         69865 110 +    197351 GTGTCCTGGGTTTTGGGTGGAGAAAGAGTCCCCTAGATAAGTTAttaggtgggtgcaaaggtaattgcagtttttcccat-tattttaattgcgaaaacagcaattacctt
s panTro4.chr3_GL389630_random     31651 110 +    103936 GTGTCCTGGGTTTTGGGTGGAGAAAGAGTCCCCTAGATAAGTTAttaggtggatgcaaaggtaatcgcagtttttcccat-tattttaattgcaaaaacagcaattatctt
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199715992 110 + 202140232 GTGTCCTGGGCTTTGGGAGCAGAAAGGCTCCCATAGATAAGTTATTAGGCGGGTGCTAAGGTAATCGGGGTCTTACCCAT-TATGTTAAGTGCGAAAACACCTATTACCTT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120808044 110 + 123690457 GTGTCCTAGGCTTTGGGTGGAGAAAGAGTCCCCTAGATAAGTTAttaggtgggtgcaaaggtaatcgcagtttttcccat-tattttaattgcagaaacagcaattacctt
i nomLeu3.chr11                C 0 C 0
s calJac3.chr17                   855411 107 -  74750902 GTGTCCTGGGCTTTGTG----GAGAGAGTCCTCTAGGTAAATTAttaggttggcataagggtaattgcaatttttgccataaattttaattgcaaaaacagaaactacctt
i calJac3.chr17                C 0 I 312
e rheMac3.chr2                      6990 2564 - 192599291 I
e chlSab2.chr15                   364845 2237 -  91754291 I
e macFas5.chr2                     15656 2558 + 192460366 I
e papAnu2.chr2                     14410 2538 - 187378091 I

a score=910.000000
s hg38.chr3_KI270935v1_alt         69975 1 +    197351 t
s panTro4.chr3_GL389630_random     31761 1 +    103936 t
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199716102 1 + 202140232 T
i ponAbe2.chr3                 C 0 I 2095
s nomLeu3.chr11                120808154 1 + 123690457 t
i nomLeu3.chr11                C 0 C 0
s calJac3.chr17                   855830 1 -  74750902 t
i calJac3.chr17                I 312 C 0
e rheMac3.chr2                      6990 2564 - 192599291 I
e chlSab2.chr15                   364845 2237 -  91754291 I
e macFas5.chr2                     15656 2558 + 192460366 I
e papAnu2.chr2                     14410 2538 - 187378091 I

a score=36440.000000
s hg38.chr3_KI270935v1_alt         69976 93 +    197351 gcaccaacctgaTGGAGTCCCCCTTGCC-ATGCTTCT-CTCTGTGAAAAACCCCAAGCCGAAGTCAGC---ATAACATCCACAGGACTCTATGTTTGC
s panTro4.chr3_GL389630_random     31762 93 +    103936 gcaccaacctgaTGGAGTCCCCCCTGCC-ATGTTTCT-CTCTGTGAAAAACCCCAAGCCGAAGTCAGC---ATAACATCCACAGGACTCTATGTTTGC
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120808155 91 + 123690457 gcaccaacctgaTGGAATCCCCCCTCCT-GTGCTTCT-CTC--TGAAAAACCCCAAGCCGAAGTCAGC---ATAACATCCACAGGACTCTATGTTTGC
i nomLeu3.chr11                C 0 C 0
s calJac3.chr17                   855831 96 -  74750902 gtaccaacctaaCAGAATCACCCCTGCCTGTGCATCTACTCTGTGAAAAACCCAAAGATAAAGTCAGCATGATAACCTCCACAGCACTC--TGTTTGC
i calJac3.chr17                C 0 I 3886
e rheMac3.chr2                      6990 2564 - 192599291 I
e chlSab2.chr15                   364845 2237 -  91754291 I
e macFas5.chr2                     15656 2558 + 192460366 I
e papAnu2.chr2                     14410 2538 - 187378091 I
e ponAbe2.chr3                 199716103 2095 + 202140232 I

a score=100415.000000
s hg38.chr3_KI270935v1_alt         70069 378 +    197351 AAAAGCCAGcttagctatattacatgtataagcacattttttcaataagtcagccttagcttactgtaactttttaactttataaacttagtattttaactttttaaacttttttgttgaaaactaagacacaaaaacacatgttagcctagatccacacagggtcagggtcatcagtatcactgtcttccacctccacattttgtctctctggaaggtcttcaggggcaataacacacatggagctgtcatcgcctgtggtaacaatgccttctacagtacttcccaaagggcctgctagttcacttaattcttttatagagagaaggagtacactctaaaacactgatcaatagtatattatagtaaatacataaa
s panTro4.chr3_GL389630_random     31855 378 +    103936 AAAAGCCAACTTAGCTATATTACATGTATAAGCACATTTTTTCAATAAGTCAGCCTTAGCTTACTGTAACtttttaactttataaacttagtattttaactttttaaacttttttgttgaaaactaagacacaaaaacacatgttagcctagatccacacagggtcagggtcatcagtatcactgtcttccacctccacattttgtctctctggaaggtcttcaggggcaataacacacatggagctgtcatcgcctgtggtaacaatgccttctacagtacttcccaaagggcctgctagttcacttaattcttttatagttagaaggagtacactctaaaacactgatcaatagtacagtatagtaaatacataaa
i panTro4.chr3_GL389630_random C 0 I 723
s nomLeu3.chr11                120808246 376 + 123690457 AAAAGCAGACTTAGCTGTATTACATGTATAAGCACAttttttcaataagtcaaccttagcttactgtaactttttaactttataaacttagtattttaactttttaaacttttttgttgaaaactaagacacaaaagcac--gttagcctagatctacacagggtcagggtcatcagtatcactgtcttccacctccacattttgtctctctggaaggtcttcaggagcagtaacacacatggagctgtcatcgcctgtggtaacagtgccttctacagtacttcccaaagggcctgttagttcacttaattcttttatagatagaaggagtacactctaaaacactggtcaatagtacagtatagtaaatacttaaa
i nomLeu3.chr11                C 0 C 0
e rheMac3.chr2                      6990 2564 - 192599291 I
e calJac3.chr17                   855927 3886 -  74750902 I
e chlSab2.chr15                   364845 2237 -  91754291 I
e macFas5.chr2                     15656 2558 + 192460366 I
e papAnu2.chr2                     14410 2538 - 187378091 I
e ponAbe2.chr3                 199716103 2095 + 202140232 I

a score=1723.000000
s hg38.chr3_KI270935v1_alt         70447 20 +    197351 ccaggaacacatttattatc
s panTro4.chr3_GL389630_random     32956 20 +    103936 ccaggaacacatttattatc
i panTro4.chr3_GL389630_random I 723 C 0
s nomLeu3.chr11                120808622  9 + 123690457 ccagtaaca-----------
i nomLeu3.chr11                C 0 C 0
e rheMac3.chr2                      6990 2564 - 192599291 I
e calJac3.chr17                   855927 3886 -  74750902 I
e chlSab2.chr15                   364845 2237 -  91754291 I
e macFas5.chr2                     15656 2558 + 192460366 I
e papAnu2.chr2                     14410 2538 - 187378091 I
e ponAbe2.chr3                 199716103 2095 + 202140232 I

a score=577874.000000
s hg38.chr3_KI270935v1_alt         70467 1199 +    197351 attatcacgtattgtgtattgtacagaatggtgtgtgctgtgctatccaggaacacatttattatcattatcaagtattgtgtactgtacagaatggtgtgcgctgtgcttttatgcaagtggcagcacagtagctttacacgagcatcactagacacatgagtagcattgcactcggcaacaggaattttttcaggcccattattataatcttatgggaccgcatcctatatgcagtttgtcattgaccaaaatgtccttatgcgatgcatgactATATTTG----------------CAAAGGActagtatctagaatacatttaaaagtcttaaaatagtaacaaaacaaagaatgcaattagaacatgagcaaaagatacaaagcaacatttcactggagaagatatacagattgcaaataagcacatgaaaagatgtttgataccattagggaaacgcttctttaaaccaggagatatcaccacgtgttagaatcaacaaaataaggccaggcatggtggctcacacctgtaatcccaacactttgggaggctggggcaggcagatcacatgagatcaggaattcaagaccaacctggccaacatggcaaaaccctgtctctgctgaaaacacaaaaattagccaggtgtggtggcacacgcctgtagtcctagcaccttgggaggctgaggcaagataattgcttaaacccaggagacggaggttgcagtaagctgagatcatgccactgcgctccagcctgggcgacagagcaagattatgtctcaaaaaaaaaaaaaaaaaaa-agaatcaccaaaataaaaaatagtaacaatactattgtcaaggatgcaaaggaactgtaccactcaatcactgctgtgagaatttaaagtggtgcagccactctgggaaacagcttggc------tgttttttttt---atgactgaatgtgcaactactatatgatgcagtaatttcatttttgcacatttatcccggagaaatgaaaacatatattcacacaaaacctgtatatgaatgctaataaaagTCAATTggccaggtgtggtggctcatgcctgtaatcccagcactttgggaggctgaggcagtggatcacctgaggtcaggagtttgagaccagcctggccaacgtggtgaaaactcgtctctactaaaaatacagcaattagctgggtgtaatagtagccac
s panTro4.chr3_GL389630_random     32976 1189 +    103936 attatcaagtattgtgtgctgtacagaatggtgtgcgctgtgctATccagtaacacatttattatcattatcaagtattgtgtactgtacagaatggtgtgcgctgtgcttttatgcaagtggcagcacagtagctttacacgagcatcactagacatatgagtagcattgcactcggcaacaggaattttt-caggcccattattataatcttatgggaccccatcctatatgcagtttgtcattgaccaaaatgtccttatgcaatgcatgactATATTTG----------------CAAAGGActagtatctagaatacatttaaaagtcttaaaatagtaacaaaacaaagaatgcaattagaacatgagcaaaagatacaaagcaacatttcactggaaaagatatatagattgcaaataagcacatgaaaagatgtttgataccattagggaaacgcttctttaaaccaggaaatatcaccacgtgttagaatcaacaaaataaggccaggcacggtggctcacacctgtaatcccaacactttgggaggctggggcaggcagatcacatgagatcaggagttcaagaccaacctggccaacatggcaaaaccctgtctctgctgaaaacacaaaaattagccaggtgtggtggcacacgcctgtagtcctagcaccttgggaggctgaggcaagataattgcttaaacccaggagacggaggttgcagtaagctgagatcatgccactgtgctccagcctgggcgacagagcaagattatgtctcaaaaaaaaaaaa---------gaatcaccacaataaaaaatagtaacaatactattgtcaaggatgcaaaggaactgtaccactcaatcactgctgtgagaatttaaagtggtgcagccactctgggaaacagcttggc------tgtttttttt----atgactgaacgtgcaactactatatgatgcagtaatttcatttttgcacatttatcccggagaaatgaaaacatatattcacacaaaacctgtatatgaatgctaataAAAGTCAATTggccaggcgtggtggctcatgcctgtaatcccagcactttgggaggctgaggcagtggatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaaactcgtctctactaaaaatacagcaattagctgggtgtaatagtagccac
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199718198 1220 + 202140232 attatcaagtattgtgtactgtacagaatggtgtgtgctctgctttccagtaacacatttattatcattttcaagtattgtgtactgtacagaatggtatgtgctgtgcttttatgcaagcggcagcacagtagctttacacgagcatcactagacacatgagtagcattgcactcggcaacaggaattttt-caggcccattattataatcttaggggaccctatcctatatgcagtttgtcattgacccaaatgtccttgtggaacacatgactgtatttgcaaaccacacatccaacaaaggactagtatctagtatacatttaaaagtctt-aaacagtaacaaaacaaagaatgcaattagaacatgagcaaaagatataaagcaacatttcactggaaaagatatacagattgcaaataagcacatgaaaagatgtttgataccgttagggaaacacccctttaaaccaggagatcccaccatgtgttagaatcaacaaaataaggccaggcacagtggctcacgcttgtaatcccaacactttgggaggctggggcaggcagatcacatgagatcaggagttcaagaccagcctggccaacatggtgaaaccctgtctctgctgaa---acaaaaattagccaggagtggtggcacacgcctgtagtcctagcaccttgggaggctgaggcaggataattgcttaaacccaggagatggaggttgcagtgagccgagattgtgccactgcactccagcctgggcgagagagcaagattatgtctcaaaaaaaaaaaaaaaaaaagagaatcaccaaaataaaaaatagtaacaatactattggtaaggatgcaaaggaactgtaccactcaatcactgctgtgagaatttaaagtggtgtagccactctgggaaacagtttggcagtttttgtttttttttttaatcactgaacatgcaactactatatgatgcagtaatttcatttttgtgcatttgtcccagagaaatgaaaacatatattcacacaaaacctgtatatgaatgctaataAAAGTCAATTggccaggcatggtggctcatgcctgtaatcccagcattttgggaggctgaggcagtggatcacctgaggtcaggagtttgagaccagcctggtcaacacggtgaaaacccatctctactaaaaatatagcaattagctgggtgtagtagtaggtgc
i ponAbe2.chr3                 I 2095 C 0
s nomLeu3.chr11                120808631 1134 + 123690457 ----------------------------------------------------------------ttattatcaagtattatgtgctgtacagaatggtgtgtgctgtgcttttatgcaagtggcagcacagtagctttacatgagcatcactagacacatgagtagcattgcactcggcaacaggaattttt-caggccccttactataatcttatgggaccccatcctatatacagtgtgtcattgacccaaatgtccttatgcaacgcatgac--tatttgcaaaccacacatccagcaaaggactagtatctagaatacatttaaaagtctt-aaacagtaacaaaacaaagaatccaattagaacatgagcaaaagatacaaagcaacatttcactggaaaagttacacagattgcaaataagcacatgaaaagatgtttgataccattagggaaatgcccctttaaaccaggagatcccaccatgtgttagaatcaacaaaataaggccgggcacggtggctcatgtctgtaatcccaacactttgggaggctggggcaggcagatcacatgagatcaggagttcaagaccagcctggccaacatggcaaaaccctatctctgctaaaaacacaaaaattagccaggcgtggtggcacatgcctgtagtcctagcaccttgagaggctgaggcaggagaattgcttaaacccaggagacagaggttgcagtgagctgagatcgtgccactgcactccagcctgggcaacagagcaagattatttctcaaaaaag--------------gaatcaccaaaataaaaaatagtaacaatactgttggcaaggatgcaaaggaactgtaccattcagtcactgctgtgagaatttacagtggtgcagccactctgggaaacagtttggc------agtttttttta---atgactgaagatgcaactactatatgatgcagtaatttcatttttgcacgtttatcccaaggaaatgaaaacatatattcccacaaaacctgtatatgaatgctaataaaagttAATTggccaggtgtggtggctcatgcctgtaatcccagcactttgagaggctgaggctgtggatcacttgaggtcaggagtctgggaccagcctggtcaacacggtgaaaacccatctctactaaaaatacagcaattagctgggtgtagtagtaggtgc
i nomLeu3.chr11                C 0 C 0
e rheMac3.chr2                      6990 2564 - 192599291 I
e calJac3.chr17                   855927 3886 -  74750902 I
e chlSab2.chr15                   364845 2237 -  91754291 I
e macFas5.chr2                     15656 2558 + 192460366 I
e papAnu2.chr2                     14410 2538 - 187378091 I

a score=113959.000000
s hg38.chr3_KI270935v1_alt         71666 150 +    197351 ctgtaatcccagctactggggaggctgaagcagaagaacctcttgaacccgggaggcagaggttgcagtgagctgagatcgtaccactgcactccagcctgggcgatagagtgagactctgtctcaaaaaataaaataaa--ataaataaaa
s panTro4.chr3_GL389630_random     34165 150 +    103936 ctgtaatcccagccactggggaggctgaagcagaagaacctcttgaacccaggaggcagaggttgcagtgagctgagatcataccactgcactccagcctgggcgatagagtgagactctgtctcaaaaaataaaataaa--ataaataaaa
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199719418 141 + 202140232 ccataatcccagctactggggaggctgaggcaggagaatctcttgaacccaggaggcagaggttgcagtgagctgagattgtaccactgcactccagcctggg----agagtgagactctgtctcaa-----aaaataaa--ataaataaaa
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120809765 152 + 123690457 ctgtaatcccagctactggtgaggctgaggcaggagaatctcttgaacccaggaggcagaggttgcagtgagctgagatcataccactgcactccagcctgggcgatagagtgagactctgtctcaaaaaataaaataaaatataaataaaa
i nomLeu3.chr11                C 0 C 0
s calJac3.chr17                   859813 138 -  74750902 ctgtaatcccagctactggggaggctgaggcaggacaatcccttgaacccagaaggcagaggttgcagtgagctgagatcataccactgcattccagcctgggtgacagagcaagactctgtctcaaaaa--aaaaaaaa------------
i calJac3.chr17                I 3886 C 0
e rheMac3.chr2                      6990 2564 - 192599291 I
e chlSab2.chr15                   364845 2237 -  91754291 I
e macFas5.chr2                     15656 2558 + 192460366 I
e papAnu2.chr2                     14410 2538 - 187378091 I

a score=32811.000000
s hg38.chr3_KI270935v1_alt         71816 39 +    197351 aGATTAGATAATCTGCAAAGTTCCTGTGAGCGCTGTCAT
s panTro4.chr3_GL389630_random     34315 39 +    103936 agattagataatctgcaaagttcctgtgagcgctgtcat
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199719559 39 + 202140232 agattagataatctgcaaagttcctgcgagctctgtcac
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120809917 39 + 123690457 agattagataatctgcaaagttcctgcaagctctgtcat
i nomLeu3.chr11                C 0 C 0
s calJac3.chr17                   859951 33 -  74750902 -----aGATAATCTCCAAAGTTCCT-TGAGCTACGTGGC
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29029975 39 +  31377067 agattggatgatcaccaaaatccctgacagcagtatcat
i canFam3.chr33                N 0 C 0
e rheMac3.chr2                      6990 2564 - 192599291 I
e chlSab2.chr15                   364845 2237 -  91754291 I
e macFas5.chr2                     15656 2558 + 192460366 I
e papAnu2.chr2                     14410 2538 - 187378091 I

a score=775333.000000
s hg38.chr3_KI270935v1_alt         71855 750 +    197351 -------TTTGTCACTCTGGTTTTTCAGATTCTTCCCCTGGAGGCTGGAGTTTCCAGGATGTCAAA----------------------------ATTACCTCTGCTTGGGTGAGCTATTTCAAGCAGCTGGGATACCTGTGTCACT----------------CC-------TGCTGTCTGCCAGTGACTGCCCAGGTGTCTG--CTGGTTCCTCCCCAGGAGTAGGGAGGAACCAGGTGGGCTGGCTGGGATGGGTGGATATTTAAAGACCAGGCCTTGGACGCTGCAGCACTTCTATCTCTGCTTGATGCCTGCTGCCACGTGGCTGGTCCTCCTCCTCCTGCTGTGGCTGAGCCTTGGGGT---------GAAGACAGGTGAGGAG--CTAGGCTGGCATCTGTGCTACAGGTCAAAGAGACCCCAATCTCTGCTCTC---TCATTCATTCAATCAATTAATCTGTTTTGTCTCTGGCATGAC---CCACCTCCTGTGACCCAGCattcattaattcat-taatcaaataattcatGTATTCAGACACTTATTAAGTACCGACTATATGGTTGATGTGGCTTCTTTGTGTATCCAG----TTTTATATCTGGATAAGATGTCTTTGGATGATCAGCTTGGGAGGGTCT----------------------AGTATCCAGAGGAT-GCTCCCTCGGATAGA-GGCAGCGTGGGCACTGTGGGTGG----CTGGGGTGGACGGGACAGGAGGGAAGGTAGGTGTGATAAACCCAGATCCAGATTAACAGGCAGACTCACT-GGGCAATTTCCAGGCACCAGTCTACTGGGTTTATT-CAAACATCCCTGGAAATACAACAGG
s panTro4.chr3_GL389630_random     34354 746 +    103936 -------tttgtcactctGGTTTTTCAGATTCTTCCCCTGGAGGCTGGAGTTTCCAGGATGTCAAA----------------------------ATTACCTCTGCTTGGGTGAGCTATTTCAAGCAGCTGGGATACCTGTGTCACT----------------CC-------TGCTGTCTGCCAGTGACTGCCCAGGTGTCTG--CTGGTTCCTCCCCAGGAGTAGGGAGGAACCAGGTGGGCTGGCTGGGATGGGTGGATATTTAAAGACCAGGCCTTGGACGCCGCAGCACTTCTATCTCTGCTTGATGCCTGCTGCCACGTGGCTGGTCCTCCTCCTCTTGCTGTGGCTGAGCCCTGGGGT---------GAAGACAGGTGAGGAG--CTAGGCTGGCATCTGTGCTACAGGTCAAAGAGACCCCAGTCTCTGCTCTC---TCATTCATTCAATCAAT----CTGTTTTGTCTCTGGCATGAC---CCACCTCCTGTGACCCAGCATTCATTAATTCAT-TAATCAAATAATTCGTGTATTCAGACACTTATTAAGTACCGACTATATGGTTGATGTGGCTTCTTTGTGTATCCAG----TTTTATATCTGGATAAGATGTCTTTGGATGATTAGCTTGGGAGGGTCT----------------------AGTATCCAGAGGAT-GCTCCCTCGGATAGA-GGCAGCGTGGGCACTGTGGGTAG----CTGGGGTGGACGGGACAGGAGGGAAGGTAGGTGTGATAAACCcagatccagattaacaggcatactcact-gggcaatttccaggcaccagtctactgggtttatt-caaacatccctggaaatacaacagg
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199719598 751 + 202140232 -------tttgtcactctGGTTTTTCAGATTCTTCCCGTGGAGACTGGAGTTTCCAGGATGTGAAA----------------------------ATTACCTCTGCTTGGGTGAGCTATTCCAAGCAGCTGGGATACCTGTGTCACT----------------CC-------TGCTGTCTGCCAGTGACTGCCCAGGTGTCCG--CTGGTTCCTCCCCAGGAGTAGGGAGGAACCAGGTGGGCTGGCTGGGATGGGTGGATATTTAAAGACCAGGCCTTGGACGCTGCAGCACTTGTATCTCTGCTTGAGGCCTGCTGCCATGTGGCTGGTCCTCCTCCTCCTGCCGTGACTGAGCCCCGGGAT---------GAAGACAGGTGAGGAG--CTAGGCTGGCATCTGTGCTGCAGGTCAGAGAGACCCCGGTCTCTGCTCTC---TCATTCGTTCAATCAATTAATCTGTTTTGTCTCTGGCATGAC---CCACCTCCTGTGACCTAGCATTCATTAATTCAT-TAATCAAATAATTCATATATTCAGATGCTTATTAAGTACTGACTATATGCTTGATGTGGCTTCTTTGTGTATCCAG----TTTTATTTCTGGATAAGATGTCTTTGGATGATTAGCTTGGGAGGGTCT----------------------AGTATCCAGAGGATGGCTCCCTTGGATAGA-GGCAGCGTGGGCACTGTGGGTGG----CTGGGGTGGATGGGACAGGAGGGAAGGTAGGTGTGATAAACCCAGATCCAGA-TAATAGGCAGACTCACTGGGGCAATTTCCAGGCACCAGTCTACTGGGTTTATT-AAAACATCCCTGGAAATACAACAGG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120809956 763 + 123690457 -------tttgtcactctGGTTTTTCAGATTCTTCCCCTGGAGACTGGAGTTTCCAGGATGTGAAA----------------------------ATAACCTCTGCTTGGGTGAGCTATTCCAAGCAGCTGGGATACCTGTGTCACT----------------CC-------TGCTGTCTGCCAGTGACTGCCCAGGTGTCCG--CTGGTTCCTCCCCAGGAGCAGGGAGGAACCAGGTGGGCTGGCTGGGATAGGTGGATATTTAAAGACCAGGCCTTGAACACTGCAGCACTTCTATCTCTGCTTGATGCCTGCTGCCATGTGGCTG---TTCCTCCTCCTGCTGTGGCTGAGCCCCGGGGT---------GAAGACAGGTGAGGAG--CTAGGCTGGCATCTGTGCTACAGGTCAAAGAGACCCCAATCTCTGCTCTC---TCATTCATTCAATCAAT----CTGTTTTGTCTCTGGCATGAC---CCACCTCCTGTGACCTAGCattcattaattcat-taatcaaataatttatGTATTCAGACACTTATTAAGTACCAACTATATGCCTGATGTGGCTTCTTTGTGTATCCAG----TTTTATATATGGATAAGATGTCTTTGGGTGATTAGCTTGGGAGGGTCTGTTTTGGTTGGGGAGTT-ATGGAGTATCCAGAGGAA-GCTCCCTCGGATAGA-GGCAGTGTGGGCACTGCGGGTGG----CTGGGATGGATGGGACAGGA-GGAAGGTAGGCATGATAAACCCAGATCCAGATTAATAGGCAGACTCATT-GGGCAATTTCCAGGCACCAGTCTATTGGGTTTATT-AAAACATCCCTGGAAATACAACAGG
i nomLeu3.chr11                C 0 C 0
s calJac3.chr17                   859984 735 -  74750902 -------TCTGTCACTCTGATTTTTCAGATTCTTCCCCGGGAGACTGGAGTTTCCAGGACGTGAAA----------------------------ATTATCCCTGCTTAAGTGAGCTATTCCAAGCAGCTGGGATACCTGCGTCACT----------------CC-------TGCTGT----CAGCGACTGCCCAGGTGTTAG--CTGGTTCCTCCC---AGCTGGGGAGGAACCAGATGGGTTGGCTGGGATGGGCAGATATTTAAAGACTGGGCCTTGGAC-CCAAAACACTGCTCTCTCCGCTCG-TGCCTGCTGCCATGTGGCTGCTGCTTCTCCTCCTGCTGTGGCTGAGCCCTGGGGT---------GAAGACAGGTGAGGAG--CTAGGCTG--ATCTGTGCTAGAGGTCAAGGAGACCTCCACCTCTGGTCTC---TCAGTCATTCAATCAATTAATCTCTTTTGTCTGTGACACGAC---CCACCTCCTGTGGTCTAGCATTCATTA-------------------------ATTCAGACCCTTATTAAGTACTGACTATATGCTTGATGTGGCTTCTCTGTGTATCCAG----CTTCATATCTG--TAAGATGTCTTTGGGTCATTAGCTTGGAAGGGCCTGTTTTGGTTGGGGAGGC-ATGGAGCATCCAGAGGAA-GCTCCCTCAGATGGAGGGCAACATGGGCACCGTGGGCAG----CTGGGGTGGGCGGGACAGGAGGTAAGGTAGGTGTGAAGAACCCAGATCCAGATTAGTAGGCAGATTCACT-GGGCAGTAGCCAGGCACCAGTCCACCGGGTTTATT-AAAACATCCCTGGAAATACAACGGG
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65397077 743 -  98207768 -------tctgccactttggcatttcagattctTCCC--AGAGCGTGGGTATAAAAAGATATAAAA----------------------------ATTACCTCTGTTTGGCTAAGTCAATCCCAGCAGCTGAAACACCTGTGCCACA----------------CAGCCACGGTGCCACCCCCTTGCCAATCACCAGGTGTCAC--CTGGCTCCTCCTCTG---TGTGGAGACACTGGACAAGTGCTCTCCAGTGAGTAGCTATTGGA--GCTGGACCTTGATCCCTGAAGCACTTCTGCATCTATTGA--GCCTGAAGCCATGTGGTTTGCCTTTCTCCTCCTGCTGTGGCTGGGCCCTGTGATTCCAAACCAGAAGGCAGGTGAGGAGAACTGAGCTGACCCCTATTTGAGAGGTCAAAGAGACCCT-GTGTTTGTTCTCATTTCATTTAGTCAATCAAT----ATTATTTATTTCTGGTCAGATACGCCACCTTCTGATGGCTAGAACCCACTCACTGATCTGATCAGGTAACCCACTTACTCAGACATCACTTGTATCCTAA--ATGTGCTTGGTGTGGCTTCTGGGTGTGTCCAC----AC-------------AGCTGTCTCTGCAGCA--AGCTTGGA---GCCT-----GCTTGGGAAGGCTGTGGAGTCTTCAGAGGTG-GTTCT-----------GG---TGTGTACACTTTTGGAGG------AGGCATGAGGGATTAGGAGGGATGGTGAGCGTAAAAAGCCCAGGTCCAGATGAACA-GCAGCCTGGTC-CATCAGCCGCCACCCACTAGTTGATCAGGATGGCTAAAAATATACCTGGAAGTACAGCAGG
i mm10.chr16                   N 0 I 1273
s canFam3.chr33                 29030014 777 +  31377067 tctggtttctctgattcTAGCTTCTCTGCTCCTCCCACAG--GTCTGGAAGCCCCAGGAGATGGGGaaaatatatatatatatttttttCCTCTATTACCTCTGCTTGGACAGGCTATTCCAAGCAGCCGGGACACCTGTGCCACTGTCTTGGTGCCACACCCC-------TGCCTTCTGCCAGTGGCTGCCCAGGTGTTGAGCTTCGCACCTCCCCAGGGAT--GCAGATACCAAACGAGCTTCCTGGGATGGGTGAGTATT-AAAGACTTGGCCTTGGTCCTTGAAACACT-CTGTCTCTGCTCAGTGCCTGCAACCATGTGTCTGG---TTCTCCTCCTGCTGTGGTTGAGCCCCGTGGCCCCAAACCAGGAGACAGGTGAGGAG--C-----------CTGTCTAGCAGGTCAAAGAGACCTCTAGTCCCTttcat---tcatttattcattcagt----cattTGTGTTCCTGGCATGAT---TTGCCTCCTAGGGGCTAATGTTCACTAATTCAT-TAATCCAATAATTCATTTCCTCGGAACCTTCCTGTGC------------TTTAATGTGGCTTCTCTGTGAATCCAACCACCTTCATATTCC--TAAGATGTCCTTGGCTGATTAGCTTGGGAAGGTTG----------GGGAGTCAGTGGAGTGTCCCAAAGAG-ATTCCTGCCAGTAGA-GGCAGCA-GGGAGTTCTAGAATGTGCACTGAGGCGGG-GAGGCAGGAGGGAAGGT-GCTGTGACAAGTCTAGACCCAGA------------CTCAAG-GGGTGACTGCCAGGCAC-AACCCATTTGTTTTgct-ataatat-ccgggaaatgtgatggg
i canFam3.chr33                C 0 C 0
e rheMac3.chr2                      6990 2564 - 192599291 I
e chlSab2.chr15                   364845 2237 -  91754291 I
e macFas5.chr2                     15656 2558 + 192460366 I
e papAnu2.chr2                     14410 2538 - 187378091 I

a score=31663.000000
s hg38.chr3_KI270935v1_alt         72605 32 +    197351 GTGAATACAGTTGCATTTACTAGAACTtctct
s panTro4.chr3_GL389630_random     35100 32 +    103936 gtgaatacagttgcatttactagaacttctct
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199720349 32 + 202140232 GTGAATACAGTTGCATTTACTAGGACTTCTCT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120810719 32 + 123690457 GTGAATACAGTTACATTTACTAGAACttctct
i nomLeu3.chr11                C 0 C 0
s calJac3.chr17                   860719 31 -  74750902 G-GAATAACATTGCATTTACTAGAACttctct
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29030791 31 +  31377067 -acgataaagttgtatttactagaatgtcttt
i canFam3.chr33                C 0 I 1572
e rheMac3.chr2                      6990 2564 - 192599291 I
e mm10.chr16                    65397820 1273 -  98207768 I
e chlSab2.chr15                   364845 2237 -  91754291 I
e macFas5.chr2                     15656 2558 + 192460366 I
e papAnu2.chr2                     14410 2538 - 187378091 I

a score=729554.000000
s hg38.chr3_KI270935v1_alt         72637 987 +    197351 ctctctctc----ctctctctctctttttaatttttttttttccagacagagtc-tgctctgtcccccgccaggctggagtgcagtggtacgatctcggctcactgcaacctccaccttctgggttcaagccattctcctgcctcagcctcccgagtagctgggattataggcatgcaccaccatgcctggctaatttttggcattttaaatagagacagggtttcgccatgttagccaggctagtcttgaacttctgacttcaggtgatctgcccacctccgcctcccaaagtgttgggattacaggtgtgagccaccgtgcctggccCTAGAACTTCTCTTGGGAGAAAACTAGATGTCATTGGTAGGAACAcagtcagctgttgct--taatgatggagacacattctgagaaatgcatcatcagatgatttctttgttgtatgaatatcatagagttcacacaacaatgaaatcgagagtttacataaacctagatggtttatatatatatttatttacatgtttgttttccacatggaaagccacatgtcccagcacatgtcccattactgaacatcagtcatttcccctgcttgatcctcaaggccaatatcgagcaccatatatcgggtttctgcatatgccctattataatcttatggggccaccgtcatatatatggtccatcatcggtctaaacatcgtgatgtggcacaaggctgTACTTCTTggctgggtgcggtggctcacgcctgtaatcccagcactttgagaggccgagacgggtggatcacttgaggtcaggagttcaagaccagcctgggtaacatggtgaaataccatcgctatt-aaaatacaaaaattagccaggtgtggtggtgggtgcctgta------atcccagctacttgggaggctgaggcaggagaatcacttgaacctgggagacagaggttgcagtgacccgagattgcgccactgcgctctagcctgggt
s panTro4.chr3_GL389630_random     35132 972 +    103936 ctctctct-----------------tttt--ttttttttttttcagacagagtc-tgctctgtcccccgccaggctggagtgcagtggtacgatctcggctcactgcaacctccaccttctgggttcaagccattctcctgcctcagcctcccgagtagctgggattataggcatgcaccaccatgcctggctaatttttggcattttaaatagagacagggtttcgccatgttagccaggctagtcttgaacttctgacttcaggtgatctgcccacctccgcctcccaaagtgttgggattacaggcgtgagccaccatgcctggccctagaacttctcttgggagaaaactagatgtcattggtaggaacacagtcagctgttgct--taatgatggagatacattctgagaaatgcatcatcagatgatttctttgttgtatgaatatcatagagttcacacaacaataaaatcgagagtttacataaacctagatggtatatatatatatttatttacgtgtttgttttccacatggaaagccacatgtcccagcaaatgtcccattactgaacatcagtcatttcccctgcttgatcctcaaggccaatatcgagcaccatatatcgggtttctgcatatgccctattataatcttacggggccaccgtcatatatatggtccatcatcggtctaaacatcgtgatgtggcacaaggctgTACTTCTTggccgggtgcggtggctcacgcctgtaatcccagcactttgagaggccgagacgggtgcatcacttgaggtcaggagttcaagaccagcctgggtaacatggtgaaataccatcgctgtt-aaaatacaaaaattagccaggtgtggtggtgggtgcctgta------atcccagctacttgggaggctgaggcaggagaatcacttgaacctgggagacagaggttgcagtgacccgagatcgtgccactgcgctctagcctgggt
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199720381 981 + 202140232 CTCTCTCTCtttttttttttttttttttt--ttttttttttttcagacagagtc-tgctctgtcccctgccaggctggagtgcagtggtacgatctcggctcactgcaatctccaccttctgggttcaagcgattctcctgcctcagcctcctgagtagctgggattataggcatgcaccaccatgcctggctaatttatggcattttaaatagagacaaggtttcgccatgttagccaggctagtcttgaacttctgacttcaggtgatctgcctgcctctgcctcccaaagtgttgggattacagacgtgagccaccgtgcccggccCTAGAACTTCTCTTGGGAGAAAACTAGATGTCATTGGTAGGAACAGagtcagctgttgct--taataatggagatacattctgagaaatgcatcatcagatgatttctttgttgtatgaatatcatagagttcacacaacaatgaaatcgagagtttacataaacctagatggtatata--------tatttatatgtttgttttccacgtggaaaaccacatgtcccagccaatgtcccattactgaacatcagtcatttcccctgcttgatcctcaaggccaatatcgagcaccatatatcgggtttctgcatatgccctattataatcttacggggccactgtcatatatatggtccatcatcagtctaaacatcgtgatgtggcacaaggctTTACTTCTTggccaggcgtggtggctcatgcctgtaatcccagcactttgagaggctgagatgggtggatcacttgaggtcaggagttcaagaccagcctggctaacatggtgaaataccatcgccatt-aaaatacaaaaattagccaggtgcgctggtgggtgcctgta------atcccagctacttgggaggctgaggcaggagaatcacttgaacctgggagaaagaggttgcagtgagccaagactgtgccactgcactccagcctgggt
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120810751 958 + 123690457 ctctct-------------------------ttttttttttttcagacagagtc-tgctctgtccgctgccaggctggagtgcagtggtatgatctcggctcactgcaacctccaccttctgggttcaagcgattctcctgccttagcctcccgagtagctgggattataggcgtgcaccaccatgcctggccaatttttggcattttaaatagaggcagggtttcgccatgttagccaggctagtctcgaacttctgacttcaggtgatctgcccgcctccacctcccaaagtgctgggattacaggcctgagtcac--tgcccggccCTACAACTTCTCTTGGGAGAAAACTAGATGTCATTGGTGGGAACAcagtcagctgttgct--taatgatggagatacattctgagaaatgcatcatcagacgatttcatttttgtatgaatatcatagagttcac---acaatgaaatccagagtttacataaacctagatggtatata----tatttatttatatgtttgttttccaaatggaaagccacatgtcccagcaaatgtcccattactcaatatcagtcatttcccctgcttgatcctcaaggccaatatcaagtgccatatattgggtttctgcatctgccctattataatcttacagggccaccgtcatatatatggtccatcatcggtctaaacatcatgatgtggcacaaggctgTACTTCTTggccgggcgcagtggctcacgcctgtaatctcagcactttgagaagctgagatggatggatcacttgaggtcaggagttcaagaccagcctggctaacatggagaaataccatcgctactaaaaatacaaaaattagccaggtgtggtggtgggtgcctgta------atcccagctacttgggaggctgaggcaggagaatcacttgaacccgggaggcagaggttgcagtgagccgagatggcgtgactgtgctccagcctgggt
i nomLeu3.chr11                C 0 I 2329
s calJac3.chr17                   860750 944 -  74750902 ttt----------------------------tttctttcttttgaaacagagtcttgctctgtcc---accaggcgcgagtgcagtggcgtgatctcggttcactgcaacctccgccttctgcgttcaagcgattctcctgtctcagcctcccgagtagctgggattacaggtgcacagcaccatgcctggctaatttttggcattttgaatagagatggggtttcaccgtgttggccacgctggtcttgaactcctcacttcaggtgatctgcccacctctgcctcccaaagtct--ggattacaggcgtga-------------gcACCAGAGC-TCTCTTGGGAGATAAGTAGATGTCACTGGAAGGAACATAGTCAGGTAATAGTAAtgataatggagattcattctaagaaacgcatcatcagacagtttcactgttgtatgaacaccagagagttcacacggcaatgaaac--agagtttacataaacctagataatatatg--tatttttatttataagtatgttttccacatgagaagccaagtgtcccagcaaatgtcccgttact----atcagtcatttcccctgcttgacccacaatgccagtatcaagtggcatctactgggtttctgcatacgccctattatactcttacgggaccgccgtcatatatatggttcctcattggtctaaacatcattatgtggtgcaagaGTATTCTTCTTggccgggtgtggtggctcacatctataatcccagcactttgagaggctgacttgggcagatcac--gaggtcaggagttcaagaccaccctggccaacatggtgaaaccccatctctattaaaaatacaaaaattagccggatgcggtggtgcacacctgtaggccttgtctcagctacttgggaggctgagacaggggaatcacttgaatctgggaggtggaggttgcagtgagccaatatctcaccactgcactccagcctgggc
i calJac3.chr17                C 0 C 0
e rheMac3.chr2                      6990 2564 - 192599291 I
e mm10.chr16                    65397820 1273 -  98207768 I
e canFam3.chr33                 29030822 1572 +  31377067 I
e chlSab2.chr15                   364845 2237 -  91754291 I
e macFas5.chr2                     15656 2558 + 192460366 I
e papAnu2.chr2                     14410 2538 - 187378091 I

a score=5718.000000
s hg38.chr3_KI270935v1_alt         73624 7 +    197351 gacagag
s panTro4.chr3_GL389630_random     36104 7 +    103936 aacagag
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199721362 7 + 202140232 gacagag
i ponAbe2.chr3                 C 0 I 3419
s nomLeu3.chr11                120814038 7 + 123690457 gacagag
i nomLeu3.chr11                I 2329 C 0
s calJac3.chr17                   861694 7 -  74750902 ggcagag
i calJac3.chr17                C 0 C 0
e rheMac3.chr2                      6990 2564 - 192599291 I
e mm10.chr16                    65397820 1273 -  98207768 I
e canFam3.chr33                 29030822 1572 +  31377067 I
e chlSab2.chr15                   364845 2237 -  91754291 I
e macFas5.chr2                     15656 2558 + 192460366 I
e papAnu2.chr2                     14410 2538 - 187378091 I

a score=16070.000000
s hg38.chr3_KI270935v1_alt         73631 24 +    197351 ggagactccatct----caggaaaaaaa
s panTro4.chr3_GL389630_random     36111 24 +    103936 ggagactccatct----caggaaaaaaa
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199724788 24 + 202140232 ggagactccatct----caaaaaaaaaa
i ponAbe2.chr3                 I 3419 C 0
s nomLeu3.chr11                120814045 24 + 123690457 ggagactccatct----caaaaaaaaaa
i nomLeu3.chr11                C 0 C 0
s calJac3.chr17                   861701 28 -  74750902 ggagattctgtctGGGGCGGGGAAAGAA
i calJac3.chr17                C 0 I 2843
e rheMac3.chr2                      6990 2564 - 192599291 I
e mm10.chr16                    65397820 1273 -  98207768 I
e canFam3.chr33                 29030822 1572 +  31377067 I
e chlSab2.chr15                   364845 2237 -  91754291 I
e macFas5.chr2                     15656 2558 + 192460366 I
e papAnu2.chr2                     14410 2538 - 187378091 I

a score=70032.000000
s hg38.chr3_KI270935v1_alt         73655 147 +    197351 aaaaaaaaaaa--CCCAAagctatttattgtggaaaaattcaaacacatgcaaaagtaaagagaataggatgatgaacccaaggtaccagttggccaccttcaatattatcaacattatgcTCAAGCTCTTATCCCCCATAttt-aaaaa
s panTro4.chr3_GL389630_random     36135 148 +    103936 aaaaaaaaaaa-aCCCAAagctatttattgtggaaaaattcaaacacatgcaaaagtaaagagaataggatgatgaacccaaggtaccggttggccaccttcaatattatcaacattatgctcaagctcttatCCCCCATAttt-aaaaa
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199724812 150 + 202140232 aaaaaaaaaaaaaCCCAAAACTGtttattatggaaaaattcaaacacatgcaaaagtggagagaataggatgatgaacccaaggtaccagctggccagcttcaaaattatcaacattttactCAAGCTCTTATCCCTCATATTTAAAAAA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120814069 145 + 123690457 aaaaaagaaaa----CCAaactatttattatggaaaaattcaaacacacgcaaaagtagagagaataggatgatgaacccaaggtaccagctggccagcttcaaaattatcaacattttgcTCAAGCTCTTATCCCCCATATTT-GAAAa
i nomLeu3.chr11                C 0 C 0
e rheMac3.chr2                      6990 2564 - 192599291 I
e mm10.chr16                    65397820 1273 -  98207768 I
e canFam3.chr33                 29030822 1572 +  31377067 I
e calJac3.chr17                   861729 2843 -  74750902 I
e chlSab2.chr15                   364845 2237 -  91754291 I
e macFas5.chr2                     15656 2558 + 192460366 I
e papAnu2.chr2                     14410 2538 - 187378091 I

a score=557653.000000
s hg38.chr3_KI270935v1_alt         73802 772 +    197351 atataaccacaataccttatcagagccaaaacaaatatggtcgcacacctgtaatcccaacactttgagagactgaggcgggcagatcgcctgaggccagaagttcaagaccagcctggccaacatggtgaaacccctgtgtctactaaaaatacaaaaattagctaggcatggtggcgggtacctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaaccagggaggtggaggttgcagtgagccgagattgcgccactgcactccagcctgggcaacagagcaagactctgtctttaaaaaaaaaattaattaattaattaatttaaaaaactacttactatcgtttaatacctatcagtgttcatatttcccccacttgtcaaaaatatctt-gttatTCAGCAGCAAAGCAGAAGAGAAAAAGAAAAAATAAGATcagatgtggtggctgatgcctgtagtcccagcactttgggaggccaaggtgggaggatcactggagctcaggagtttgagaccagcctgggtacaatagcgagactcagtctctacaaaaaaaaaat--ttgtttaaaaattagcaaggtgtgttgatgttcacctatagtcccagctattcagaaggctgaagtgagaaaattgcttgagccccagaagttgcggctgcagcgagctgtgaccataccactgcattccagtctgctgcaccgagtgagaccatgtctcaaaaaaaaaaaaa-----------------------------------------aaaaaaaaaaaaaaagaaagaa
s panTro4.chr3_GL389630_random     36283 755 +    103936 atataaccacaataccttatcagagccaaaacaaatatggccgcacacctgtaatcccaacactttgagagactgaggcgggcagatcacctgaggccagaaattcaacaccagcctggccaacatggtgaaacccctgtgtctactaaaaatacaaaaattagctaggcatggtggcgggtacctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaaccagggaggtggaggttgcagtgagccgagattgcaccactgcactccagcctgggcaacagagcaagactctgtcttttaaaaaaaaactaattaattaattaattttaaaaactacttactatcatttaatacctatcagtgttcatatttcccccacttgtcaaaaatatctt-gttattcagcagcaaagcagaagagaaaaagaaaaaaaaaggtcagatgtggtggctgatgcctgtagtcccagcactttgggaggccaaggtgggaggatcactggagctcaggagtttgagaccagcctgggtacaatagcgagactcagtctctacaaaaaaaaaaaaattgtttaaaaattag----gtgtgttgatgttcacctatagtcccagctattcagaaggctgaagtgagaaaattgcttgagccccagaggttgcggctgcagcgagctgtaaccataccactgcattccagtctgctgcaccgagtgagaccatgtctcaaaaaaaaaaaaa--------------------------------------------------------gaaagaa
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199724962 751 + 202140232 ATATAACCACAATGCCTTATCAGAGCCAAAACAAATATGGCCAcacacctgtaatcccaacacattgggagactgaggtgggcagatcacctgaggccagaagttcaagaccagcctggccaacatggtgaaacccctgtgtctactaaaaatacaaaaattatctaggcatggtggcggatgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaaccagggaggtggaggttgcagtgagccaagactgcaccactgcactccagcctgggcaacagagcaagactctgtctct---aaaaaaacaaaTTAATTAATTAATT--AAAAACTACTTACTATCGTTTAATACCTATCAGTGTTCATATTTCCCACACTTGTCAAAAATATCTT-GTTTTTCAGCAGCAAAGCTGAAGAGAAAAAGAAAAA--AAGTTcaggtgcggtggctgatgcctgtggtctcagcactttgggaggccaagatgggaggatcgctggagctcaggagtttgaggccagcctgggtataatagcgagactcagtctctacaaaaaaaaatt--ttgtttaaaaattagcaaggtgtgttgatgtccacctatagtcccagctgttcagaaggctgaagtgagaaaattgcttgagccccagaggttgtggctgcagcgagctgtgaccgtacgactgcattccagtctgctgcactgagtgagaccatgtctcaaaaaaaaaaaaa-------------------------------------------------------agaaagaa
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120814214 778 + 123690457 atataaccacaataccttatcagagccaaaacaaatatggctgcacacctgtaatcccaacactttgggagactgaggcaggcagatcacctgaggccaggagttcaagaccagcctggccaacatggtgaaacccctgtctctaccaaaaatacaaaaattagctaggcatggtggcgggtgcctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaacccaggaggcggaggttgcagtgagccaagattgcaccactgcactccagcctgggcaacagagcaagactctgtctctaaaaaaaaaaataattaattaattt-----aaaaactacttactatcatttaatacctatcagtgttcatatttcccccacttgtcaaaaatatctt--tttttcagcagcaaagcagaagagaaaaagaaaaaaaaaggtcaggtgcggtggctgatgcctgtagtcccagcactttgggaggccaaggtgggaggatcactggagctcaggagtttgagaccagcctgggtacaatagtaagactcagtcgctac---aaaaaatt--ttgtttaaaaattagcaaggtgtgttgatgtccacctata--------------------------gggaaaattgcttgagccccagaggttgcagctgcagcgagctgtgatcgtaccactgcattccagtctgctgcactgagtgagaccatgtctcaaaaaaaaaaaaCgaaagaacgaacgaacgaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaa
i nomLeu3.chr11                C 0 C 0
s calJac3.chr17                   864572 754 -  74750902 ataAAACCACAAAACCTTATTAGAGCTAAAACAAATGTGGCTGCA---ctgtaatcccaacactttgggaggctggagtggacagatcacctgaagccaggaatctgagaccagcctggccaacgtggcaaaatccccgtctctcctaaaaatacaagaattagctgggcatggtggcaggtgcctgtaatcccaactagtcaggaggctgaggcaggagaatcacttgaacctgggagatggaggttgcagtgagccgagaccgtgccattgcactccagcctgggcaacagagcgagactccttctctaaaacaaaaacaaacaaataa---------aacaaCCACTTACTATTGTTTAATACCTATCAGTGTTAATATTTCCCCCATTTGTCAAAAATATCTTTTTTTTTCAGCTGCAAAGTAGAAAGGAAAAAGAAAAAA-AAggctgagcgtggtggctgatgcctgtagtcccagcacttcgggaggtcaaggtgggaggatcacttgagctgaggagtttgagaccagcctgaggacaatagcaagactcggtctctac-----aaattg--ttttttttaaattagccaagtgtgttg-tgcacacctgtagtcccagctattcagaaggctgaagtgggaaagtggcctgagccccagaggctgaggatgcagcaacccatgactgtaccactgcactgcagtctgctcgacccagggagaccgcgtctcaaaaaaataaaat-----------------------------------------aaaataaagaaGGAAGGCAGGA
i calJac3.chr17                I 2843 I 1877
e rheMac3.chr2                      6990 2564 - 192599291 I
e mm10.chr16                    65397820 1273 -  98207768 I
e canFam3.chr33                 29030822 1572 +  31377067 I
e chlSab2.chr15                   364845 2237 -  91754291 I
e macFas5.chr2                     15656 2558 + 192460366 I
e papAnu2.chr2                     14410 2538 - 187378091 I

a score=1146.000000
s hg38.chr3_KI270935v1_alt         74574 2 +    197351 ag
s panTro4.chr3_GL389630_random     37038 2 +    103936 ag
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199725713 2 + 202140232 ag
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120814992 2 + 123690457 ag
i nomLeu3.chr11                C 0 C 0
e rheMac3.chr2                      6990 2564 - 192599291 I
e mm10.chr16                    65397820 1273 -  98207768 I
e canFam3.chr33                 29030822 1572 +  31377067 I
e calJac3.chr17                   865326 1877 -  74750902 I
e chlSab2.chr15                   364845 2237 -  91754291 I
e macFas5.chr2                     15656 2558 + 192460366 I
e papAnu2.chr2                     14410 2538 - 187378091 I

a score=161345.000000
s hg38.chr3_KI270935v1_alt         74576 244 +    197351 aaaaatgcctttttacagctggtttattcaagtcaagatccaaaaaagat-acgcacac-atgtttaactagcatatttcttaaatgtctttaaatctatacctagatcagtgccattttttcatgtc---------------atttagctgttgaacgaaccaggtactgtgtcctgcggcatatcctaccttctgggtttgactgattgaatctttgtggatgtccctctg-cctctgtctttcctgaactctggtagt-----t
s panTro4.chr3_GL389630_random     37040 242 +    103936 aaaaatgcctttttacagctggtttattcaagtcaagatccaaaaaagat-atgcacac---gtttaactagcatatttcttaaatgtctttaaatctatacctagatcagtgccattttttcatgtc---------------atttagttgttgaacaaaccaggtactgtgtcctgcagcatatcctaccttctgggtttggctgattgaatccttgtggatatccctctg-cctctgtctttcctgaactctggtagt-----t
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199725715 249 + 202140232 aaaaaTGCCtttttacagctggtttattcaagtcaagatccaaaaaaggt-acgcacac-atgtttaactagcgtatttcttaaatgcctttaaatctatacctagatcagtgccattttttgatgtc---------------atttagttgttgaacgaagcagatactgtgtcctgtggcatatcctaccttctgggtttggctgattgaatctttgtggatgtccctctg-cctctgtctttcctgaaatctggtagttgagat
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120814994 250 + 123690457 aaaaacgcctttttacagctggcttcttcaagtcaagatccaaaaaagataacgcacac-atgtttaactagcatatttcttaaatgtctttaaatctatacctagatcagtgccattttttgatgtc---------------atttagttgttgaacgaaccaggcactgtgtcccgcggcatatcctaccttctgggtttggctgattgaatctttgtggatgtcgctctg-cctccgtctttcctgaaatctggtaattgagat
i nomLeu3.chr11                C 0 C 0
s canFam3.chr33                 29032394 252 +  31377067 aaaaagacctttttgcaattggcttatccaa-tcaggatccaaacaaggt-ccacaagttatatttaactggtatatttcttaagccccttcaaatct--------atcagtccccttttcctttttcttcaagctgttttttttttaattattgaataaaccaggtgatttgttctgtagaatgtcctacactctggatttatctgattgaacccatgtggatgcccctctgtcccctacatttgctgaaacctggtaat-----t
i canFam3.chr33                I 1572 I 234
e rheMac3.chr2                      6990 2564 - 192599291 I
e mm10.chr16                    65397820 1273 -  98207768 I
e calJac3.chr17                   865326 1877 -  74750902 I
e chlSab2.chr15                   364845 2237 -  91754291 I
e macFas5.chr2                     15656 2558 + 192460366 I
e papAnu2.chr2                     14410 2538 - 187378091 I

a score=26175.000000
s hg38.chr3_KI270935v1_alt         74820 49 +    197351 gagatcaggactggagatttcttaggcaggaagaatccataggtgggta
s panTro4.chr3_GL389630_random     37282 49 +    103936 gagatcaggactggagatttctttggcaggaagaatccataggtgggta
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199725964 49 + 202140232 gagatcaggactggagatttctttggcaggaagaatccataggtgggta
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120815244 49 + 123690457 gaaatcaggactggagatttctttgacaggaagaatccatagatgggta
i nomLeu3.chr11                C 0 C 0
e rheMac3.chr2                      6990 2564 - 192599291 I
e mm10.chr16                    65397820 1273 -  98207768 I
e canFam3.chr33                 29032646 234 +  31377067 I
e calJac3.chr17                   865326 1877 -  74750902 I
e chlSab2.chr15                   364845 2237 -  91754291 I
e macFas5.chr2                     15656 2558 + 192460366 I
e papAnu2.chr2                     14410 2538 - 187378091 I

a score=191795.000000
s hg38.chr3_KI270935v1_alt         74869 296 +    197351 cttcctatcgcacctcgaaggagacacaaagtgtccagctgtcccacttttactggtgttaaacttcatccaccagata--------gtgcacccattataaa-attc------------tgtccactaa---------------tgatttgtgctgagatccacttctcattaggggctgccaagtagtgcttttcta------tcattctttctgcacttgttagccgaaggttctctgtcgtgaagatatttcccttgtcaactatttggcttggatggaaaggctggatcaatgtttgattctttatttttcatcttcataataatgagctagc
s panTro4.chr3_GL389630_random     37331 296 +    103936 cttcctatcgcgccttgaaggagacacaaagtgtccagctgtcccacttttactggtgttaaacttcatccaccagata--------gtgcacccattataaa-atcc------------tgtccactaa---------------tgatttgtgctgagatccacttctcattaggggctgccaagtggtgcttttcta------tcattctttctgcacttattagccgaaggttctctatcgtgaagatatttcccttgtcaactatttggcttggatggaaaggctggatcaatgtttgattctttacttaccattttcataataatgagctagc
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199726013 292 + 202140232 ctt-ctatcacacctc---tgagacacaaagtgcccagctgtcccacttttactggtgttaaacttcatccaccagata--------gtgcacccatgataaa-attc------------tgtccactaa---------------tgatttgtgctgagatccacttttcattaggggctgccaagtagtgcttttcta------ttgttctttgtgcacttgttagccgaagtttctctatcatgaagatatttcccttgtcaactatttggcttggatggaaaggctggatcaatgtttgattctttatttatcatttttgtaataatgagctagc
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120815293 296 + 123690457 cttcctattgtgcctcgaaggagacacaaagtgtccagctgtcccacttttactggtgttaaacttcatccaccagata--------gtgcacccattataaa-attc------------tgtccactaa---------------tgatttgtgctgagatccactttttattaggggctgccaagtagtgcttttcta------ttgttctttctgcacgtgttggccgaagtttctctatcgtgaagatatttcccttgtcaactattttgcttggatggaaaggctggatcaatgtttgattctttctttatcattttcgtaataatgagctagc
i nomLeu3.chr11                C 0 C 0
s canFam3.chr33                 29032880 332 +  31377067 cttcctgttgcatcccaaagaagacacccgaagtccagtggtcccac-cttgct-atgttaaccttgatctgccagatgcatctgttgtaggtcccttataaacattcccctgcaacctttctccagtggttttaatcccggcgttgattgttgcttagatccaattttc-ttatgggtcaccgaatgctggctttctagctctgtcactccttctgcatttcttagctgcaattcttcta---taaagacttttcccttgtcaaccacttggcttgtatggaaaggctggataaatgtttaattcttcatttaccattttcaggataatgagcctgt
i canFam3.chr33                I 234 C 0
e rheMac3.chr2                      6990 2564 - 192599291 I
e mm10.chr16                    65397820 1273 -  98207768 I
e calJac3.chr17                   865326 1877 -  74750902 I
e chlSab2.chr15                   364845 2237 -  91754291 I
e macFas5.chr2                     15656 2558 + 192460366 I
e papAnu2.chr2                     14410 2538 - 187378091 I

a score=39300.000000
s hg38.chr3_KI270935v1_alt         75165 48 +    197351 tcctcggcacccCGGGGGAAGTTGTCTTCAAATGCTgccttgaagcat
s panTro4.chr3_GL389630_random     37627 48 +    103936 tcctcggcacccCGggggaagttgtcttcaaatgctgccttgaagcat
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199726305 48 + 202140232 tccttggcaccccgggggaagttgtcttcaaatgctgccttgaagcat
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120815589 48 + 123690457 tcctcagcaccctGGGGGAAGTTGTCTTCAAATGCCgccttgaagcat
i nomLeu3.chr11                C 0 C 0
s mm10.chr16                    65399093 48 -  98207768 tcctttatagctgaaGGAAGGCTGGGTTCAAGTGTGACCTTGATATGT
i mm10.chr16                   I 1273 I 1
s canFam3.chr33                 29033212 48 +  31377067 tccttagcaacccagggaagaatgaatttAAACATGACcttgaaggag
i canFam3.chr33                C 0 C 0
e rheMac3.chr2                      6990 2564 - 192599291 I
e calJac3.chr17                   865326 1877 -  74750902 I
e chlSab2.chr15                   364845 2237 -  91754291 I
e macFas5.chr2                     15656 2558 + 192460366 I
e papAnu2.chr2                     14410 2538 - 187378091 I

a score=1080317.000000
s hg38.chr3_KI270935v1_alt         75213 1062 +    197351 -agaatatttaattctaatggatatgggagggaagggccttccaagccgagggaagagcttgagcaaaggctcagaggcaggag--------------------------------------aatgcagggtgtttagagaaCAGCAGAGCTCCGTAGCACGTGCAACAAGAGGCTTTTTGAGTGAGGACCCTGAGCACGATATGGTGGGAAAGCAGGGGAGAGGTCAGGATTGCTGGTTTGACTCC----CAGCCATG-----------------------GGCAAAAGGTTCTCCCCTTGTCTATACAATGAGGACATCTCTCTAGATcagtggctttccaacgtttctggccccagttcactttaataaatacattttatactctgacccagtaagtgcatctgtgtgtataaaaaccaacagaaatttcaaaa-agaact-cagttgac------ttttacatacaatgtatgtgggtctattctattctatttcattcagtgt--------------------------------------------------------------------------catcc--tgttgaaataaatgttggttatg-----------accactgaattgaactcagtctcacagattgtcggcaac-cttagtctgGGTGGCTCCTGGGGCTCTATTTCCACTCCAGCCCTTTCTGGTTGATCCCTGGTCTTGGTGACAACCTGACGCAGCACCAGGCTCTGGAGAAGAGGGACAACATGAGAAGAGAAGCTGATCACTTGCAGGAGGCTCCTGAGCTGAACATGAGGCAAAAGCCAGGCCAAACTCAGAGGCTGTGGCCCC-----------AGCCA-GGCC-ACCCTCACCTTCAGAGTCTTGACCCCCCAGACCACA---------CTACCGGACACCTGCTGGC-CCTGTTTCCACAACAGACTGGCTCAGCCACACCCAGGCCCACAG-GGCTCAGAGGCCTGCTCCCTGTTGATCGTGTCAACTTTGAAAGGCCTTCAAGTTTATCCCTAAACAAAGCCCTCCAGTTTAGCCCTAAAGAGCCAGGTGTTAACCTAACAGGAAGCAATTTGGAAGGTCAAAGTCAAGTAGACGGAGAAGAGTGTTGAGAGTCCTGGG-GTGACAACACCTGGGTCCCCTGCTCACCTGAGCCACAGACTCGCCAGGTAACTGGGCCAGCGTCCCTCCTGCCCACGCCTTGCTTGCCGC
s panTro4.chr3_GL389630_random     37675 1060 +    103936 -agaatatttaattctaatggatatgggagggaagggccttccaa-ccgagggaacagcttgagcaaaggctcagaggcaggag--------------------------------------aatgcagggtgtttagagaaCAGCAGAGCTCCGTAGCACGTGCAACAAGAGGCTTTTTGAGTGAGGACCCTGAGCACGATATGGTGGGAAAGC-GGGGAGAGGTCAGGATTGCTGGTTTGACTCC----CAGCCACG-----------------------GGCAAAAGGTTCTCCCCTTGTCTATACAATGAGGACATCTCTCTAGATcagtggctttccaacgtttctggccccagttcactttaataaatacattttatactctgacccagtaagtgcatctgtgtctataaaaaccaacagaaatttcaaaa-agaact-caattgac------ttttacatacaatgtatgtgggtctattctattctatttcattcagtgt--------------------------------------------------------------------------catcc--tgttgaaataaatgttggttatg-----------accactgaattgaactcagtctcacaaattgtcggcaac-cttagtctgGGTGGCTCCTGGGGCTCTATTTCCACTCCAGCCCTTTCTGGTTGATCCCTGGTCTTGGTGACAACCTGACGCAGGACCAGGCTCTGGAGAAGAGGGACAACATGAGAAGAGAAGCTGATCACTTGCAGGAGGCTCCTGAGCTGAACATGAGGCAAAAGCCAGGCCAAACTCAGAGGCTGTGGCCCC-----------AGCCA-GGCC-ACCCTCACCTTCAGAGTCTTGACCCCCTAGACCACA---------CTACCAGACACCTGCTGGC-CCTGTTTCCACAACAGACTGGCTCAGCCACACCCAGGCCCACAG-GGCTCAGAGGCCTGCTCCCTGTTGATCGTGTCAACTTTGAAAGGCCTTCAAGTTTATCCCTAAACAAAGCCCTCCAGTTTAGCCCTAAAGAGCCAGGTGTTAACCTAACAGGAAGCAATTTGGAAGGTCAAAGTCAAGTAGACGGAGAAGAGTGTTGAGAGTCCTGGG-GTGACAACACCTGGGTCCCCTTCTCATCTGAGCCACCGACTCGCCAGGTAGCTGGGCCAGCGTCCCTCCTGCCCACGCCTTGCTTGCTCC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199726353 1056 + 202140232 -agaatattttattctaatggatatgagagggaagggccttccaagctgagggaacagcttgagcaaaggctcagaggcaggag--------------------------------------aatgcagggtgtttagagaacagcagagctcagtAGCACGTGCAACAAGAGGCTTTTTGAGTGAGAGCCCTGAGCATGATATGGTGGGAAAA--GGGGAGAGGTCAGGATTGCTGGTTTGACTCC----CAGCCATG-----------------------GGCAAAGGGTTCTCCCCTTGTCTATACAATGAAGACATCTCTCTAGATcagtggctttccaacgtttctggccccagttcactttaataaatacattttttactctgacccagtaagtgcctcca----tctaaaaaccaacagaaatttcaaaa-agaact-caattgac------ttttacatacaatgtatgcgggtctattctattctatttcattcagtgt--------------------------------------------------------------------------catcc--tgttgaaataaatgttggttatg-----------accaccgaattgacctcagtctcacaaattgtcggcaac-cttagtctgGGTGGCTTCTGGAGCTCTATTTCCACTCCAGCCGTTTCTGGTTGATCCCTGGTCTTGGTGACAACCTGACACAGGACCAGGCTCTGGAGAAGAGGGACAACATGAGAAGAGAAGCTGATCACTTGCAGGAGGCTCCTGAGCTGAACATGAGGCAAAAGCCAGGCCACACTCAGAGGCTGCGGCCCC-----------AGCCA-GGCC-ACCCTCACCTTCAGAGTCTTGACCCCCCAGACCACA---------CTACCAGACAAGTGCTAGC-CCTGTTTCCACAACAGACTGGCTCAGCCACACCCAGGCCCACAG-GGCTCAGAGGCCTGCTCCCTGTTGATCTTGTCAACTTTGAAAGGCCTTCAAGTTTATCCCTAAACAAAGCCCTCCAGTTTAGCCCTAAAGAGCCAGGCGTTAACCTAACAGGAAGCAATTTGGAAGGTCAAAGTCAAGTAGACAGAGAACAGTGTTGAGAGTCCTGGG-GTGGCAACACCTGGGTCCTCTTATCATCTGAGTCACAGACTCACCAGGTAACTGGGCCAACATCCCTCCTGCCCATGCCTTGCTTGCCCC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120815637 1058 + 123690457 -agaatattttgttctaatggatatgggagggaagggccttctaagccaagggaacaacttgagcaaaggctcagaggcaggag--------------------------------------aatgcagggtgtttag-gaacagcagagctcagtAGCACATGCAACAAGAGGCTTTTTGAGTGAGGACCCTGAGCACGATATGGTGGGAAAGCAGGGGAGAGGTCAGGATTGCTGGTTTGACTCC----CAGCCATG-----------------------GGCAAAGGGTTCTCCCCTTGTCTATACAATGAGGACATCTCTCTAGATcagtggctttccaacgtttctggcccccattcactttaataaatacattttatactctgacccagtaagtgcatccgtgtctataaaaaccaacagaaatttcaaaa-agaact-caattgac------ttttacatacaacgtatgtggg-----tctattctatttcattcagtgt--------------------------------------------------------------------------catcc--tgttgaagtgaatgttggttatg------------ccaccgaattgacctcagtctcacaaactgtcggcaac-cttagtctgGGAGGCTCCTGGGGCTCTATTTCCACTCCAGCCATTTCTGGTTGATCCCTGGTCTTGGTGACAACCTGACGCAGGACGAGGCTCTGGGGAAGAGGGACAATATGAGAAGGGAAGCTGATCACTTGCAGGAGGCTCCTGAGCTCAATATGAGGCAAAAGCCAGGCCAAACTCAGAGGCTGTGGCCCC-----------AGCCA-GGCC-ACCCTCACCTTCAGAGTCTTGACCCCCCAGACCACA------CTTCTACCAGACACCTGCTGGC-CCTGTTTGCACAACAGACTGGCTCAGCCACACCCAGGCCCACAG-GGCTCAGAGGCCTGCTCCCTGTTGATCTTGGCAACTTTGAAAGGCCTTCAAGTTTATCCCTAAACAAAGCCCTCCAGTTTAGCCCTAAAGAGCCAGGTGTTAACCTAACAGGAAGCAATTTGGAAGGTCAAAGTCAAGTAGACAGAGAACAGTGTTGAGAGTCCTGGG-GTGACAACACCTGGGTCCTCTTATCATCTGAGCCACAGACTCGCCAGGTAACTGGGCCAACATCCCTCCTGCCCACGCCTTGCTTGCCCC
i nomLeu3.chr11                C 0 C 0
s calJac3.chr17                   867203 1054 -  74750902 -AGAATATTTTCTTCTAAtggatacgggaggggagagccttccaagcagagggaacagcttgagc-aaggctcagaggcaggag--------------------------------------aaggtagggtgtttggagaaCAGCAGGGCTCGGTAGCACGTGCAACAAGAGGCTTTCTGAGTGAGGATCCTGAGCATAACGTGGTGGGAAAGC-AGGAAGAAGTCAGGATTGCTGGTTTGACTCC----CAGCTGTGTCAACAACTGAAGCATGACCACCGGAAAAGGGCTCTCCCCTCGTCTACGCAATGAGGACATCTGTCTAGATcagtggctttcacacgtttctgg-cccaattcacatgaataaatacatgttatacttttacccagtaaatgcatccatgtgtgtaaaaaccaacaaaagcttcagaa-agaact-ccatttac------ttttacatgcagcgtatgtgggcctatcctattctgtttcattCAGCGT--------------------------------------------------------------------------CATCC--CGTTAAAATATGTCTGAG---------------------------GCTCTCAGACTCACAGATGGTTTGCAAG-CTTAGTCT-GATGGTTCCTGGGGCTCTGTTTCTGCTTCAGCCCTTTCTGGTTGATCCCCGGTCTCAGTGACAACCTGATACAGGACCAGGATCTGGGGAAGAGGGACAACATGAGAAGGGAAGCTGATCACTTGCAGGACGCTCCGGAGCCCAACAGGAGGCAGGAGCCAGGCTAGACTCAGAGGCTGTGGTCCC-----------AGCCC-GCCC-ATCCTCACCGTC--AGTCTTGACCTCCCAGACCACTGCTTCCCTTCCACCAGACACCTGCTGGC-CCTGTTTCCACAACAGACTGGCTCA-CCACACCCAGGCCCATGG-GGATTAGAGGCCTGCTCCCTGTTGATCTTGTCAACTTTGAAAGGCCTTCGAGTTTATCTCTAAACAA-------------AGCCCTAAACAGTCAGGTGTTAACCTAATAGGAAGCAATGTGGAAGGTCAAGGTAAAGCAGTT---GAACAGCATTGAGAGTCCTGCG-GTGAGAACACCTGGGTCCGCTTCTCACCGAAGCCATAGACTTGCCAAGTAA-TGGGCCGTAGTCCCTCCTGCCAATACCTTCTTTGCCCC
i calJac3.chr17                I 1877 I 308
s mm10.chr16                    65399142  919 -  98207768 -AGAACCATTTCTGCTAATGGATTT-----GGACAGGCCTCCCAAGCTGATGACACAGCATACACCAAGGCTCAGAAGCAGGTG--------------------------------------CAGGCAAGGT--------------------------------------------------GTGACACTCTTGGGAGCGGGGTGATAGGAAAGCCAGAAAGATGCTGCTTCTCCAGGTTTGCAGCCAGCTCAAGCATG-----------------------GCTTTGGGTACCATCCTCCATCTATAGAATGAGAGCCTCTCTCTAGA-------CTTTCAGGCTTTTCTGGCTCCGATCCATTTTTACAAGCATTAATTGTTCTGTGACCTAGTTCACTCATCCATG-------GAGCTAAGGCAACTTTTAAAG--------CAACTTAT------TCTTGTATTTAATGCATGCAGGTCTATTTGGTTCAATTTAATTCTGCCT----------------------------------------------------------------GGCTCCATTCCATCCTGTGTCACACTGCCCATCAGTCACAGTAAAGTAAACACCATCGGATTGATCTCTGATTCACAAACAAG-GCCACC-CTTCATTTGGACG------------CTTCTCCCACCCTTGCTCTT--TAGTTGATTCTTGGTCTT----------------------AGATGCTTGAGAAGAGGGATGGCTTAGGGATGG-AGTAAGCCACCAGTAGGAGGCCCCTGAACTGAGTGTGA-ACTGGAGCCTG---AGGCTCA---GCCAGAGCCCC-----------AGCCCTGCCC-ACTCTTACTTTGAGAGG-------TCCCGGACCTCT---------GCTCTCTGCACTTCAGACT-CCTGTTTTCACAACACTTTGGCTTGGCCACACCCAGCCTTGCTTCCTTTCAAAGGCCAGCT-TCTGTTGACCCTGTCAACTCTGAAAGTCC-TCAAGTTTATCCTTAAACAAGGCCCCT-----------------GGCAGGTGCTAAGCTAACAGGAATCAATTGAAAAG---AAAGC------------AAGCAGCATTAAAA---TTAAA-ATTAAGCTATCTGGGCCCA---GTCCCATGAACCA--GACTCTCCAGGAACATACCTCACC--CCCGCCTGCCCA-GTTTCATTTTTTCC
i mm10.chr16                   I 1 I 2
s canFam3.chr33                 29033260 1169 +  31377067 aagaatgctttcctttagtggctatgggagggaagcgcttac---acagaggagacagcttgagcaaagactccagagcagcagtatgcagggtggttttgttttgttttgttttgttttttaatgcagggtgttgagAGAGTGGCAGAGATCGGTAGCAAGTGTAACAACAGGTTGTGTGAATgagaagcccg--------gtgcggaaaaagcagggaggcagtcagaattgtcggttctcctcc----cagctctgtctcccactcaagcatgacctttggaaaacggcttttccatt----------------------tctagATcagtagctttcaaacttttctggccacaattcacattaatgaatatattatacacggtgattcagtgcacacgtacatgtatataaaaac----aaaaatttcaaaaaagaactccaaataacttataattatatatatgatgtatgtggatatcttccattccattccattccattccattccattccattccattccattccattccattctattcctttccattctcttccatccattttgctccattccatct--tactaaaataaatgccagtcatg-----------accactgaattgatttctgactcacatatgtgctacaactctttgtttggataaTCTCTAGGGCTTTTTTCCATATCCAGCCCTCTTTGATCCAT-CCTGGTATTGGTGACAACCTGGCACTGAACCAGGAACTTGGGAAGAGGGATGATGTGAGAAGGGGAACTAATCATTTGCAGGAGGCTCCTT-GCCCAACAAGAAGCAGAAGCCAGGCCAAACTCAGAGGCCATCCCCCCCAACCCCCCCGAGCCT-GGCCTGCCGTCACCTTGAGAGGTCTGACCTCCCAGGCTACTGCTCCCCTCTCACCGGACACCTACTGGTGCCTGTTTCCATAACAGGCCAGGCTGACCACACCTAGCCCCACATCCTCTCAGGAGCCTGCTCCTTGTTGATCTTGTCAACTTTGGAAGGCCCTCAAGTTTATCCATAAACAAAGCCCCG-------------------CAGGTGCTAAGCTGACAGGAGGTGACTGGGTAGGTCAAGGTAAagcagagaaagaacagcactgagagtcctgggtgtgagatcccctggggctcattcccccctgagccactgactcacc----acctgggccacatccctacctgccaatgccttgctttcccc
i canFam3.chr33                C 0 I 1
e rheMac3.chr2                      6990 2564 - 192599291 I
e chlSab2.chr15                   364845 2237 -  91754291 I
e macFas5.chr2                     15656 2558 + 192460366 I
e papAnu2.chr2                     14410 2538 - 187378091 I

a score=126039.000000
s hg38.chr3_KI270935v1_alt         76275 110 +    197351 ACTCTTAAAGAAGATGCATCCCCTTCTCTTGGAGGGAAT-GACAATGACCAGATCACAACTGAGCTGAGCAATTTGGGGAAATTTGGGCAGGGG--GTAGAGTTGGCAGAACT
s panTro4.chr3_GL389630_random     38735 110 +    103936 ACTCTTAAAGAAGATGCATCCCCTTATCTTGGAGGGAAT-GACAATGACCAGATCACAACTGAGCTGAGCAATTTGGGGAAATTTGGGCAGGGG--GTAGAGTTGGCAGAACT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199727409 110 + 202140232 ACTCTTAAAGAAGATGCATCCCCTTATCTTGGAGGGAAT-GACAATGACCAGATCACAACTGAGCTGAGCAATTTGGGGAAATTTGGGCAGGGG--GTAGAGTTGGCAGAACT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120816695 110 + 123690457 ACTCTTAAAGAAGATGCATCCCCTTATCTTGGAGGGAAT-GACAATGACCAGATCACAACTGAGCTGAGCAATCTGGGGAAATTTGGGCAGGGG--GTAGAGTCGGCAGAACT
i nomLeu3.chr11                C 0 C 0
s calJac3.chr17                   868565 107 -  74750902 ACTCTTAACGAAGATGCACCCCCTTACCTTGGAGGGAAT-GACCAAGACCAGATCACAGCTGAGCTAAGCACTTTGGGGAAAT---GGCCGGGG--GTGGAGCTGGCAGAACC
i calJac3.chr17                I 308 C 0
s mm10.chr16                    65400063 103 -  98207768 TCTCTTAAAAGAGGTGCACCTGCTTATTT----GTGGTT---TAATAAACAGATAACCACTGAGTTGAGCAACTTAGGGAAAT---GGTTAGGGAAGCAGAGCTGACGAAACT
i mm10.chr16                   I 2 I 716
s canFam3.chr33                 29034430 108 +  31377067 tcccttaaagaagATAACCCCCCTCACTCTGTAGTGGGTAGGCAATAGCCCAGATATGATCGAAGTGAGCAACTTGGGAAAAT---GGTTAGAA--TTAGGGTTGATGAAACC
i canFam3.chr33                I 1 C 0
e rheMac3.chr2                      6990 2564 - 192599291 I
e chlSab2.chr15                   364845 2237 -  91754291 I
e macFas5.chr2                     15656 2558 + 192460366 I
e papAnu2.chr2                     14410 2538 - 187378091 I

a score=33744.000000
s hg38.chr3_KI270935v1_alt         76385 34 +    197351 GGTTTGTAAACAGGGCTCTGGAAGACCTTCCTCT
s panTro4.chr3_GL389630_random     38845 34 +    103936 GGTTTGTAAATAGGGCTCCGGAAGACCTTCCTCT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199727519 34 + 202140232 GGTTTGTAACTAGGGCTCCGGAAGACCTTCCTCT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120816805 34 + 123690457 GGTTTGTAAATAGGGCTCCGGAAGACCTTCCTCT
i nomLeu3.chr11                C 0 C 0
s calJac3.chr17                   868672 34 -  74750902 ATTTTGTAAGCTGGGCTCCTGGAGACCTTCCTCT
i calJac3.chr17                C 0 I 9054
s canFam3.chr33                 29034538 34 +  31377067 GCTTTGTGATTAGGGACCATGGCGACCTTCCTCC
i canFam3.chr33                C 0 C 0
e rheMac3.chr2                      6990 2564 - 192599291 I
e mm10.chr16                    65400166 716 -  98207768 I
e chlSab2.chr15                   364845 2237 -  91754291 I
e macFas5.chr2                     15656 2558 + 192460366 I
e papAnu2.chr2                     14410 2538 - 187378091 I

a score=172336.000000
s hg38.chr3_KI270935v1_alt         76419 301 +    197351 AACTGTGGGGAGTGGGGGAGGGGTTtctc--tccctcttaggcactctcttctctgctgttttctc-----tatt-----tctctcttc---gctgtcactcccattaccgtcctcatcttatctcccccttttctctccttctctctctctctG--------------------------TTTaataacagctttattgagagataatttacaggatgtgagatttacccttttgtacaattcaccatgtgtacatttcagtgttgttcagtgtattcacagggt--tgcagaaccatcactgctgtcttattttaTTTTTTTGGCACtttttggtagagaca
s panTro4.chr3_GL389630_random     38879 301 +    103936 GACTGTGGGGAGTGGGGGAGGGGtttctc--tccctcttaggcactctcttctctgctgttttctc-----tatt-----tctctcttc---actgtcactcccattaccgtcctcatcttatctcccccttttctctccttctctctctctctt--------------------------tttaataacagctttattgagagataatttacaggatgtgagatttacccttttgtacaattcaccgtgtgtacatttcagtgttgtttagtgtattcacagggt--tgcagaaccatcactgctgtcttattttaTTTttttggtactttttggtagagaca
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199727553 306 + 202140232 AACTGTGGAGAGTGGGGGAGGGGTT--TC--CCCCTCTTAGGCActctcttctctgctgttttctc-----tatt-----tctgtcttctttgctgtccctcccattaccatcctcatcttatctcccccttttctctccttctctctctctctg----------------------tctttttaataatagctttattgagagataatttacatgatgtgaaatttacccttttgtacaattcaccatgtgtacatttcagtgttttttagtgtattcacagggt--tgcaaaaccatcactgctgtcttattttaTTTttttggtactttttggtagagaca
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120816839 313 + 123690457 AACTGTGGGGAGTGGGGGAGGGGTTTCTC--TCCCTCTTAGGCACTCTCTTCTCTGCTGTTTTCTCGATTGTCTT-----TCTCTCTTCTTTGCTGTCACTCCCGTTACCCTCCTCATCTTATCTCCCCCTTTTCTCTCCTCCTCTCTCTCCCTG----------------------TCtttttaataacagctttattgagagataatttacatgatgtgaaatttacccttttgtacaattcaccatgtatacatttcagtgttttttagtgtattcacagggt--tgcaaaaccatcactgctgtcttcttttaTTTttttggtactttttggtagagaca
i nomLeu3.chr11                C 0 C 0
s canFam3.chr33                 29034572 269 +  31377067 AACTCTGTGGGGT---------TTTTCTCTGTCCCTCTT-GTCACACTTCTGTCTGTTGTTTACTT-----TATTGCTTCTCTTTCTTCCTTCCCGCCACATCC-CTGCCAGCCTCCTCTTGTCT--CTCTTCTCTCTCCTTCCTTCTTTCTCTCAGCTCCGTCTCACTCTTGTGCCTCTCTTTaataacagctttcctgagatataatgcctctaacatcaaattcatccttttaaa-----------gggtacacttcagtggtttttaatgtgttcacagagtcgtgcaaaaaaa----------------------------------------------
i canFam3.chr33                C 0 C 0
e rheMac3.chr2                      6990 2564 - 192599291 I
e mm10.chr16                    65400166 716 -  98207768 I
e calJac3.chr17                   868706 9054 -  74750902 I
e chlSab2.chr15                   364845 2237 -  91754291 I
e macFas5.chr2                     15656 2558 + 192460366 I
e papAnu2.chr2                     14410 2538 - 187378091 I

a score=58331.000000
s hg38.chr3_KI270935v1_alt         76720 109 +    197351 gggttttgccacgttggccaggctagtctcaaactcctgacctcaaatgatctgcccgcctcggcctcccaaagtgctgggattacaggtgtgagccactgcgcctggc
s panTro4.chr3_GL389630_random     39180 109 +    103936 gggttttgccacgttggccaggctagtctcaaactcctgacctcaaatcatctgcctgcctcggcctcccaaagtgctgggattacagctgtgagccactgcacctggc
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199727859 109 + 202140232 gggtttcgccacgttggccaggctagtctcaaactcctgacctcaaatgatctgcccgcctcggcctcccaaagtgctgggattacaggtgtgagccactgcacctggc
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120817152 109 + 123690457 gggtttcgccacattggccaggctagtctcaaactcctgaccccaaatgatctgcccacctcggcctcccaaagtgctgagattacaggtgtgagccactgtgcctggc
i nomLeu3.chr11                C 0 C 0
e rheMac3.chr2                      6990 2564 - 192599291 I
e mm10.chr16                    65400166 716 -  98207768 I
e canFam3.chr33                 29034841   0 +  31377067 C
e calJac3.chr17                   868706 9054 -  74750902 I
e chlSab2.chr15                   364845 2237 -  91754291 I
e macFas5.chr2                     15656 2558 + 192460366 I
e papAnu2.chr2                     14410 2538 - 187378091 I

a score=216256.000000
s hg38.chr3_KI270935v1_alt         76829 303 +    197351 cacctctgtctaatttcagaacatgtttgttatgccccaaataaactctg-acccatcagcagtcactgcctggtccacacatctcaccagcccctggcaaccactaatatactttctgtcttgatggatttgtctattctaaacatttcatataaatggaatcatacaatacacggccttttgtgagtggcttctttcacttagcatgt--tttcaagtttcattgttgttgtggcatgcatctgtacttcattcctttttatggctgagtaatatcccattatatggatataccagatttagtt
s panTro4.chr3_GL389630_random     39289 304 +    103936 cacctctgtctaatttcagaacatgtttgttatgccccaaataaactctgtacccatcagcagtcactgcctagtccgcacatctcaccagcccctggcaaccactaatgtactttctgtcttgatggatttgtctattctaaacatttcatataaatggaatcatacaatacacggccttttgtgagtggcttctttcacttagcatgt--tttcaagtttcattgttgttgtggcatgcatctgtacttcattcctttttatggctgagtaatattccattatatggatataccagatttagtt
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199727968 304 + 202140232 cacctctgtctaatttcagaacatgtttgttaggccccaaataaactctgtacccatcagcagtcactgcctagtccccacatctcaccagcccctggcaaccgctaatatactttctgtcttgatggatttgtctattctaaacatttcatataaatggaatcatacaatacacggccttttgtgagtggcttcttttacttagcatgt--tttcgagtttcattgttgttgtggcatgcatctgtacttcattcctttttatggctgagtaatattccattatatggatataccagatttagtt
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120817261 302 + 123690457 cAC--ctgtctaatttcagaacatgtttgttacaccccaaataaactctgtacccatcagcagtcactgcctagtccccacatctcaccagcccctggcaaccgctaatgtactttctgtcttgatggatttgtctattctaaacatttcatataaatggaatcatataatacacggccttttgtgagtggcttctttcacttagcatgt--tttcaagtttcattgttgttgtggcatgcatctgtacttcattcctttttatggctgagtaatattccattatacggatataccagatttagtt
i nomLeu3.chr11                C 0 C 0
s canFam3.chr33                 29034841 305 +  31377067 caccattgtctaatttcagaacatttcttcactccccaaaagtggccctgtaccctttagcagtcactccctgttccccataccac-ctggcccctggcaaacattaatctacttcccgtctctatgggcttccccgtggtggacatttcgcataaatggaatcctacaatatgtgggcatttgtcactgactgctttcacttagcatttcgtttctaggttcatccacgttgtcgtgtgtctcaggactccatttcttattatggctgaatagtatcccactgtgtaggggtaccatagtttgtt
i canFam3.chr33                C 0 I 194
e rheMac3.chr2                      6990 2564 - 192599291 I
e mm10.chr16                    65400166 716 -  98207768 I
e calJac3.chr17                   868706 9054 -  74750902 I
e chlSab2.chr15                   364845 2237 -  91754291 I
e macFas5.chr2                     15656 2558 + 192460366 I
e papAnu2.chr2                     14410 2538 - 187378091 I

a score=213285.000000
s hg38.chr3_KI270935v1_alt         77132 338 +    197351 ttagccattcatcagttgaagggcatttgaattgtttctactatttggctattatgaataacactgctatgaatattcattgataggtttttgtgtgaacatgtgtttttaattctc--ctaact--------acaggctcagaagtagggtttctgggtcatatgg-caactctatgttt-acattctgagaaactgtcaaattgtttttctttttt--ttcttttttttttttattcttttctgctgccacctcatctccccaaattgattttcaaagtggctgcaccattttgcaattccaccagcagtgtatgagggttccaatttctccacaccctcagcaacactt
s panTro4.chr3_GL389630_random     39593 340 +    103936 ttagccattcatcagttgaagggcatttgaattgtttctactatttggctattatgaataacactgctatgaatattcattgataggtttttgtgtgaacatgtgtttttaattctc--ctaact--------acaggctcagaagtagggtttctgggtcatatgg-caactctatgttt-acattctgagaaactgtcaaattgtttttctttttttcttttttcttttttttattattttctgctgccacctcatctccccaaattgattttcaaagtggctgcaccattttgcaattccaccagcagtgtatgagggttccagtttctccacaccctcagcaacactt
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199728272 335 + 202140232 ttatccattcatcagttgaagggcatttgaattgtttctactatttggctattatgaataacactgctaggaatattcattgataggttttcgtgtgaatatgtgtttttaattctc--ctaact--------acaggctcagaagtagggtttctgggtcatatgg-caactctatgtttaacattctgagaaactgtcaaattgtttttctttttt--cttttttctttttttattcttttctgctgccacctcatctccctaa----attttcaaagtggccgcaccattttgcaattccaccagcagtgtatgagggttccaatttctccgcatcctcagcaacactt
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120817563 328 + 123690457 ttatccattcatcagttgaagggcatttgaattgtttctactatttggctattatgaataactctgctatgaatattcattgataggttttcatgtgaacatgtgtttttaatt-----ctaact--------acaggctcagaagtagggtttctgggtcatatgg-caactctgtgtttaacattctgagaaactgtcaaattgtttttctttttt----------tttttttattcttttctgctgccacctcatctccccaaattgattttcaaagtggctgcaccattttgcaattccaccagtagtgtatgagggttccaatttctccacatcctcagcaacactt
i nomLeu3.chr11                C 0 C 0
s canFam3.chr33                 29035340 293 +  31377067 ttatccattcatcagctgacaaacatttgatttgtttccactttggggtacttatgaataatgctcctttgaacatttatgtacaggtttttatggggac-tgtattttcatttctcttctgggtttattttcatatactcagaaatgggcttgctgcatcatatggttttcactctgttaaacattctgaggatctgccaaactgtttttttctgtt------------------------------------------------------ttccagagtggctgcgccatgcttcaatt---ccagcaatgtgtg-gggttccgatttctccacattctcaccaacactt
i canFam3.chr33                I 194 I 862
e rheMac3.chr2                      6990 2564 - 192599291 I
e mm10.chr16                    65400166 716 -  98207768 I
e calJac3.chr17                   868706 9054 -  74750902 I
e chlSab2.chr15                   364845 2237 -  91754291 I
e macFas5.chr2                     15656 2558 + 192460366 I
e papAnu2.chr2                     14410 2538 - 187378091 I

a score=256001.000000
s hg38.chr3_KI270935v1_alt         77470 496 +    197351 caacacttgctttttttttttttttttttgagatggggtctcgctctgtcgccaggctggagtgcagtggcgtgatctcagctcactgcgacctctgcctcctgggttcaagagattctcgtgcctcagcctcctgagtagctgggactacaggtgcatgccaccacacccagctaatttttgtatttttagtagagac-gggtttcactatgctggccaggatggtctcaaactcctgaactcgtcatccacccatctcagtgttcccaagtgccgtgattacaggtgtgagccaccccacccagccaacacttgctgttttattttttatcttagccgtcctactggatgtggggtggtatctcattgtggtttggatttgcatttccttatgattaatgatgttgagtatctttcatgctcactggccacttgtgtatcttctttggagaaatgtctatttaaatcctttgtccagttttaaatttgattgACt
s panTro4.chr3_GL389630_random     39933 495 +    103936 caacacttgc--tttttttttttttttttgagatggggtctcgctctgtcgctaggctggagtgcagtggcgtgatctcagctcactgcgacctctgcctcctgggttcaagagattctcgtgcctcagcctcctgagtagctgggactacaggtgcatgccaccacacccagctaatttttgtatttttagtagagacggggtttcactatgctggccaggatggtctcaaactcctgaactcatgatccacccgtctcggtgttccaaagtactgtgactacaggtgtgagccactgcacccagccaacacttgctattttattttttatcttagccgtcctaatggatgtggggtggtatctcattgtggtttggatttgcatttccttatgattaatgatgttgagtatctttcatgctcactggccacttgtgtatcttctttggagaaatgtctatttaaatcctttgtccagttttaaattTGATGGACt
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199728607 492 + 202140232 caacacttgc-----ttttttttctttttgagatggagtctcgctctgtcaccaggctggagtgcagtggcatgatctcagctcactgcgacctctgtctcctgggatcaagagattctcgtgcctcagcctcccgagtagctgggactacaggtgcctgccaccacacccagctaatttttgtatttttagtagagacagggtttcactatgctggccaggatggtctcaaactcctgaactcgtgatccacccttctcagtgttccacagtgctgtgattacaggtgtgagccactgcacccagccaacacttgctattttattttttatcttagccatcctaatggatgtgggatggtatctcattgtggtttggatttgcatttccttatgattaacgatgttgagtatctttcatgctcactggccacttgtatatcttcttttgagaaatgtttatttaaatcctttgtccagttttaaatttgattgACt
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120817891 489 + 123690457 caacacttgc--------tttttttttttgagatggggtctcgcactgttgccaggctggagtgcagtggcgtgatctcagctcactgcgacctctgccttctgggttcaggagattctcgtgcctcagcctcccgagtagctgggactacaggtgcatgctgccacacctagctaatttttgtatttttagtagagacggggtttcactgtgctggccaggatggtctcaaactcctgaacttgtgatccacccgtctcagtgttccaaagtgctgtgattacaggtgtgagccaccgcacccagccaacacttgctattttattttttatcttagccatcctaatggatgtggggtggtatctcattgtggtttggatttgcatttccttattattaatgatgttgaatatctttcatgctcactggccacttgtatatcttctttggagaaatgtctatttaaatcctttgtccagttttaaatttgattgACt
i nomLeu3.chr11                C 0 C 0
e rheMac3.chr2                      6990 2564 - 192599291 I
e mm10.chr16                    65400166 716 -  98207768 I
e canFam3.chr33                 29035633 862 +  31377067 I
e calJac3.chr17                   868706 9054 -  74750902 I
e chlSab2.chr15                   364845 2237 -  91754291 I
e macFas5.chr2                     15656 2558 + 192460366 I
e papAnu2.chr2                     14410 2538 - 187378091 I

a score=513053.000000
s hg38.chr3_KI270935v1_alt         77966 632 +    197351 tatttttatttatttatttattttggaggcagagtcttgctctgttgcccaggctggagtgcagttgtgcaatcttggctcactgcaacctccacctcctgggttcaagcaattctcctgcctcagcctcctgagtagctgggactataggtgcatgctaccaagcccagctaatttttgtgtttttagtagagac--gggtttcaccatgttggccaggctggtgttgaactcctggcctcaagtgatctgcctgccttggtctcccaaagtgctgggattacaggcatgagccaccgcacccagccagtttcagctcttacatttaggtctatggtccattttgagttaatatttgtatatggtttgaggtaggagtccaaatgcattcttttgcatgtgcttatccagttgtctaagcaccatttgttaaaTCTATCttttcttttcctttt-------tttttttttttttttttttttgagacagggtcttgctctgtcacccaggctgaagtgcgctggtgtgatcatggctcacttcagcttcctgcgtctgggctcaagtgat-ctcctgtctcagcctcctgggtagctgggactacaggcgtgcaccaccatacctggctaattttaatctt
s panTro4.chr3_GL389630_random     40428 641 +    103936 tatttttatttacttattttttttggaggcagagtcttgctctgttgcccaggctggagtgcagttgtgcaatcttggctcactgcaacctccacctcctgggttcaagcagttctcctgcctcagcctcctgagtagctgggactataggtgcatgctaccaagcccagctaatttttgtatttttagtcgagacaggggtttcaccatgttggccaggctggtcttgaactcctggcctcaagcgatctgccttccttggtctcccaaagtgttgggattacaggcatgagccaccacacccagccagtttcagctcttacatttaggtctatggtccattttgagttaatatttgtatatggtgtgaggtaggagtccaaatgcattcttttgcatgtgcttatccagttgtccaagcaccatttgttaaatctatcttttcttttctttttctttttcttttctttttttttttattttgagacagggtcttgctctgtcacccaggctgaactgcactggtgtgatcatggctcacttcagtttcctgcttctgggctcaagtgat-ctcctatctcagcctccggggtagccgggactacaggcatgcaccaccatacctggctaattttaatctt
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199729099 634 + 202140232 tatttttatttatttattttttttggagacagagtcttgctctgttgcccaggctggagtgcagttgtgcaatcttggctcactgcaacctccacctcctgggttcaagcaattctcttgcctcagcctcctgagtagctgggaccataggtgcatgttaccgttcccagctaatttttgtatttttagtagagacagcagtttcaccatgtttgccaggctggtcttgaactcctggcctcaagtgatctgccttccttggtctcccaaagtgctgggattacaggcataagccaccacacccagccagtttcagctcttacatttaggtctatggtccattttgagttaatatttgtatatggtgtgaggtaggagtccaaatgcattcttttgcatgtgcttatccagttgtccaagcaccatttgttaaaTCTGtcttttcttttcttttt-------ctttttcttttctttttttttgagacagggtcttgctctgtcacccaggctgaagtgcactggtgtgatcatggctcatttcagcttcctgcttctgggctcaagtgat-ctcctatctcagcctcctgggtagctgggactacaggcatgcaccaccatacctggctaatgttaatctt
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120818380 631 + 123690457 tatttttatttatttatttattttggaggcagattcttgctctgctgcccaggctggagtgcagttgtgcaatcttggctcactgcaacctccacctcctgggttcaagcaattctcctgcctcagcctcctgagtatctgggactataggtgcatgctaccatgcccagctaatttttgtatttttagtagggacaggggtttcaccatgtttgccaggctggtcttgaactcctggcctcaagtgatctgcctgcctcagtctcccaaagtgctgggattacaggcatgagccaccacacccagccagtttcagctcttacatttaggtctatggtccattttgagttaatatttgtatatggtgtgaggtaggagtccaaatgcattcttttgcatgtgcttatccagttgtccaagcaccatttgttaaatctatcttttcttttctttttctttt--tcttttcttttttttttttttgagacaggatcttgctctgtcatccaggctgaagtgcactggtatgaccatggctcacttcaacttcctgtttctgggctcaagtgat-ctcctatctcagcctcctgggtagccaggactacaggcacgcaccacca--------taattttaatctt
i nomLeu3.chr11                C 0 C 0
s calJac3.chr17                   877760 631 -  74750902 taccCCTGtttatttttatttttttgaaatagagtcttgctctgttgtccaggctggagtgcagttgtgcaatcttggctcacagcaaccttcacctcctgggttcaagcaattctcctgccttagcctcccaagtagctgggactgt-tgtgctcaccaccacgctcagctaatttttgtattattagtagagat-ggagttttaccatgttggccaggctggtcttgaactcctggcctcaagtgatctgcctgtctttgtctctcaaagtgttaagattacaggtgtgagccaccatgactggccagtttcagctcttacatttaggtctttggtacattttgagttaatatttgtatacggtgtgaggtaggggtccaaatgcattctcttgcatgtgcttatccagttgtccaagcaccatttgttaaatctatcttttcTtttctttct-------ttgtttctttttcttttttttgagacagggtcttgctctgtcacctaggctgaagtgcagtggtgtgatcatggctcatttcagcttccagcttctgggctcaagtgctcctcctacctcagccccctgggtagctgggactataggcatgtaccaccacacctggctaattttagtc--
i calJac3.chr17                I 9054 C 0
e rheMac3.chr2                      6990 2564 - 192599291 I
e mm10.chr16                    65400166 716 -  98207768 I
e canFam3.chr33                 29035633 862 +  31377067 I
e chlSab2.chr15                   364845 2237 -  91754291 I
e macFas5.chr2                     15656 2558 + 192460366 I
e papAnu2.chr2                     14410 2538 - 187378091 I

a score=546.000000
s hg38.chr3_KI270935v1_alt         78598 1 +    197351 t
s panTro4.chr3_GL389630_random     41069 1 +    103936 t
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120819011 1 + 123690457 t
i nomLeu3.chr11                C 0 C 0
s canFam3.chr33                 29036495 1 +  31377067 T
i canFam3.chr33                I 862 C 0
e rheMac3.chr2                      6990 2564 - 192599291 I
e mm10.chr16                    65400166 716 -  98207768 I
e calJac3.chr17                   878391 0 -  74750902 C
e chlSab2.chr15                   364845 2237 -  91754291 I
e macFas5.chr2                     15656 2558 + 192460366 I
e papAnu2.chr2                     14410 2538 - 187378091 I
e ponAbe2.chr3                 199729733 0 + 202140232 C

a score=210180.000000
s hg38.chr3_KI270935v1_alt         78599 156 +    197351 t-----------ttTTTTTTTTTAATGTTCCTTTTTCTCCAGGCAGCTGCTCCCAACCCCAGAACCTTTGCTGTCTTGGGACGGATCACCGCTGCAAGAGGGGAAGTTGCTACTGTGATGAATTCTGCCATGTGGCACCAGACTGCCACCCAGACCACAGTGTCCTC
s panTro4.chr3_GL389630_random     41070 167 +    103936 tttCTTTCTTTCTTTCTTTTTTTAACGTTCCTTTTTCTCCAGGCAGCTGTTCCCAACCCCAGAACCTTTGCTGTCTTGGAACAGATCACCACTGCAAGAGGGGAAGTTGCTACTGTGATGAATTCTGCCATGTGGTACCAGACTGCTACCCAGACCACAGTGTCCTC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199729733 155 + 202140232 ------------ttttTTTTTTTAATGTTCCTTTTTCTCCAGGCAGCTGCTCCCAACCCCAGCAACTTTGCTATCTTAGAACGGATCACCAGTGAAAGAGGGGAAGTTGCTACTGTGATGAATTCTGCCATGTGGTACCAGACTGCTGCCCAGACCACAGTGTCCTC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120819012 165 + 123690457 tttttttttt--tttttttttttAACGTTCCTTTTTCTCCAGGCAGCTGCTCCCAACCCCAGCACCTTTGCCGTCTTGGAACGGATCACCACTGCAAGAGGGGAAGTTGCTACTGTGGTGAATTCTGCCATGTGGTACCAGACTGCTGCCCAGACCACAGTGTCCTC
i nomLeu3.chr11                C 0 C 0
s calJac3.chr17                   878391 155 -  74750902 ------------tatttttAAAAAATGTTCCTTGTTCTCCAGGCAGCTGCTCCCAACCCCAGCGCCTTTGCTGTCTTGGAACAGATCACCACTGCAAGAGGGGAGGTTGCTACTGTGATGAATTCTGCCATGTGGTACCAGACTGCTGCCCAGACTACAGTCTCCTC
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65400882 156 -  98207768 -----------TCTGTCTTTTTAAATGTCTCCTCTCCTCCAGGCAGTTGTTCCCAGCCCCAGCCTCTCTGCTGCCCCGGAGAGGATTATGGCTGCAAGAGAGGAAACTGCTATTGTGATAAATTCTGCCGTGTGCTATCAGACTGCTGCCCAGACCACGAGACCCTC
i mm10.chr16                   I 716 C 0
s canFam3.chr33                 29036496 152 +  31377067 -----------CTGTCTCTTTCTCATGTCCCTTCT-CTGCAGGCAGCTGCTCCCAACCCC-GCCCGTCTGCTGCCCCGGATCAGA-CACCATCGCAGGAGAGGAAGCTGCTG-TGTGACGAATCCTGCCACGTGGCATCACACTGCTGCCCAGGCCACCGTGCCCTC
i canFam3.chr33                C 0 C 0
e rheMac3.chr2                      6990 2564 - 192599291 I
e chlSab2.chr15                   364845 2237 -  91754291 I
e macFas5.chr2                     15656 2558 + 192460366 I
e papAnu2.chr2                     14410 2538 - 187378091 I

a score=11997.000000
s hg38.chr3_KI270935v1_alt         78755 3 +    197351 TGC
s panTro4.chr3_GL389630_random     41237 3 +    103936 TGC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199729888 3 + 202140232 TGC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120819177 3 + 123690457 TGC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr2                      9554 3 - 192599291 tgC
i rheMac3.chr2                 I 2564 C 0
s macFas5.chr2                     18214 3 + 192460366 tgC
i macFas5.chr2                 I 2558 C 0
s papAnu2.chr2                     16948 3 - 187378091 tgc
i papAnu2.chr2                 I 2538 C 0
s calJac3.chr17                   878546 3 -  74750902 TGC
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65401038 3 -  98207768 TGC
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29036648 3 +  31377067 CGC
i canFam3.chr33                C 0 C 0
e chlSab2.chr15                   364845 2237 -  91754291 I

a score=455784.000000
s hg38.chr3_KI270935v1_alt         78758 130 +    197351 AACCCTGGTAACTCACATACAGGCCCGATTCCACCTACAGCAAAGctggatgcgatggctggcagaggcaaaccctttgcctgcacttcaggccaaagccgggatgtggcctagatggttcctaaggtcc
s panTro4.chr3_GL389630_random     41240 130 +    103936 AACCCTCGTAACTCACATACAGGCCTGATTCCACCTACAGCAAAGCTGGATGCTATGGTTGGCagaggcaaaccctttgcctgcacttcaggccaaagccgggatgtggcctagatggttcctaaggtcc
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199729891 130 + 202140232 AACCCTGGTAACTCACATACAGGCCTGATTCCACCTACAGCAAAGCTGGATGCTATGGTTGGCAGAGGCAAGCCCCTTGCCTGCACTTCAGGCCAAAGCCgggatgtggcctagatggttcctaaggtcc
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120819180 130 + 123690457 AACCCTGGTAACTCACATACAGGCCTGATTCCACCTACAGCAAAGCTGGATGCTATGGTTGGCAGAGGCAAGCCCTTTGCCTGCACTTCAGgccaaagccaggatgtggcctagatggttcctaaggtcc
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr2                      9557 130 - 192599291 AACCCTGGTAACTCACACACAGGTCCGGTCCCACCCACAGCAAAGCTGGATGCTGTGGTTGGCAGAGCCAAGCCGTTTGCCTGCACCTCAGGCCAAAGCCgggatgcgacctagatggttcctaaggtcc
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     18217 130 + 192460366 AACCCTGGTAACTCACACACAGGTCCGGTCCCACCCACAGCAAAGCTGGATGCTGTGGTTGGCAGAGCCAAGCCGTTTGCCTGCACTTCAGGCCAAAGCCgggatgcgacctagatggttcctaaggtcc
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     16951 130 - 187378091 aacCCTGGTAACTCACACACAGGTCCGGTTCCACCCACAGCAAAGCTGGATGCTGTGGTTGGCAGAGCCAAGCCCTTTGCCTGCACTTCAGGCCAAAGCCGGGATGTGACCTAGATGGTTCCTAAGGTCC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   367082 130 -  91754291 AACCCTGGTAACTCACACACAGGTCTGTTTCCACCCACGGCAAAGCTGGATGCTGTGGTTGGCAGAGGCAAGCCCTTTGCCTGCACTTCAGGCCAAAGCCgggatgtgacctagatggttcctaaggtcc
i chlSab2.chr15                I 2237 C 0
s calJac3.chr17                   878549 130 -  74750902 AACCCTGGTAACTCACATGTAGGCTTGTTTCCACCTACAGCAAAGCTGCATGCTGTGGTTGGCAGAGGCGAGCCCTTTGCCTGCATGTCAGGCCAAAGCTGGGACGTGCCCTGGATGGTTCCAAAGGCCC
i calJac3.chr17                C 0 I 68
s mm10.chr16                    65401041 118 -  98207768 AACTCCAGTGACCTGCATGCAGGCTCTCTTCCACCCGTGGCTCAGCTGGATGCTGTAACCCACAGAGGCAA-------GCCTGGACTTTAGATGGTGGCCGCTATGGAG--TGGGTGGCACC--ACATC-
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29036651 125 +  31377067 CACCCAGGTAA-TCACACGCCAGCTCCTTCCCACC--CGGCGGGGCTGGGTGCTGTGATGGACAGAGGCGGCCCGTCCAC--GCgcctcaggccaaggcccaggtgtggactggaaggccccggaggtgc
i canFam3.chr33                C 0 C 0

a score=74967.000000
s hg38.chr3_KI270935v1_alt         78888 23 +    197351 ctgacaatcctg-agatcttg-CAT
s panTro4.chr3_GL389630_random     41370 23 +    103936 ctgacaatcctg-agatcttg-CAT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199730021 23 + 202140232 ctgacagtcctg-agatcttT-CAT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120819310 23 + 123690457 ctgacaatcctg-agatcttg-CAT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr2                      9687 23 - 192599291 ctgacaatcctg-agatcttg-cat
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     18347 23 + 192460366 ctgacaatcctg-agatcttg-cat
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     17081 23 - 187378091 CTGACAATCCTG-AGATCTTG-CAT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   367212 23 -  91754291 ctgacaatcctg-agatcttg-CAT
i chlSab2.chr15                C 0 C 0
s mm10.chr16                    65401159 24 -  98207768 CTGATGGTCCTGCAGTTCTTA-TAG
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29036776 24 +  31377067 ctgacaattctg-ggatcctgacat
i canFam3.chr33                C 0 C 0
e calJac3.chr17                   878679 68 -  74750902 I

a score=1315818.000000
s hg38.chr3_KI270935v1_alt         78911 381 +    197351 CTTGTCTATT-----TCAGGTCAAAGGTGCCTACATGCTCCTTCTAGCTTTGTTTC-CCTGATGTTCCTTGCCA--CCTGCTACTCCTCTCTGAGCTACTTTTCCAGGT-TCCACAGGGAGAGGTTCAGCTGTCCGTGGTAGACATGAGGGTAGAGAATGAGGTGGTTGGGTTCCACTTA----CCTTTCTATCATCTTGCAGTATGGATGTCTCTTGACTGGTACCGTGTAGACTTTTGAGGGCACACAGGAGTCTGCAGAG-AGATACTGGGGACATTGAGCAGCAGCAG--TGGGGTTGGGAGGCAGAAATGAGGACAGGAACATTTACCTTGTGTTTCTCTCAGCTTCTCAGATGACCAAGATGGTGCTGCAGATGGTGCTGAGGATGGAGAA
s panTro4.chr3_GL389630_random     41393 381 +    103936 CTTGTCTATT-----TCAGGTCAAAGGTGCCTACATGTTCCTTCTAGCTTTGTTTC-CCTGATGTTCCTTGCCA--CCTGCTACTCCTCTCTGAGCTACTTTTCCAGGT-TCCACAGGGAGAGGTTCAGCTGTCCGTGGTAGACATGAGGGTAGAGAATGAGGTGGTTGGGTTCCACTTA----CCTTTCTATCATCTTGCAGTATGGATGTCTCTTGACTGGTACCATGTAGACTTTTGAGGGCACACAGGAGTCTGCAGAG-AGATACTGGGGACATTGAGTAGCAGCGG--TGGGGTTGGGAGGCAGAAATGAGGACAGGAACATTTACCTTGTGTTTCTCTCAGCTTCTCAGATGACCAAGATGGTGCTGCAGATGGTGCTGAGGATGGAGAA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199730044 381 + 202140232 CTTGTCTATT-----TCAGGTCAAAGGTGCCTACATGTTCCTTCTAGCTTTGTTTC-CCTGATGTTCCTTGCCA--CCTGCTACTCCTCTCTGAGCTACTTTTCCAGGT-TCCACAGGGAGAGGTTCAGCTGTCCATGGTAGACATGAGGGTAGAGAATGAGATGGTTGGGTTCCACTTA----CCTTTCTATCATCTTGCAGTATGGATGTCTCTTGACTGGTACCATGTAGACTTTTGAGGGCAGACAGGAGTCTGCAGAG-AGATACTGGGGATATTGAGCAGCAGCAA--TGGGGTTGGGAGGCAGAAATGAGGACAGGAACATTTACCTTGTGTTTCTCTCAGCTTCTCAGATGACCAAGATGGTGCTGCCGATGGTGTTGAGGACGGAGAA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120819333 379 + 123690457 CTTCTCTATT-----TCAGGTCAAAGGTGCCTACATATTCCTTCTAGCTTT-TTTC-CCTGATGTTCTTTGCCA--CCTGCTACTCCTCTCTGAGCTACTTTTCCAGGT-TCCACAGGGAGAGGTTCAGCTGTCCGTGGTAGACATGAGGGTAGAGAATGAGGTGGTTGGGTTCCACTTA----CCTTTCTATCGTCTT-CAGTATGGATGTCTCTTGACTGGTACCATGTAGACTTTTGAGGGCAGACAGGAGTCTGCAGAG-AGATACTGGGGATGCTGAGCAGCAGCAG--TGGGGTTGGGAGGCAGAAATGAGGACAGGAACGTTTACCTTGTGTTTCTCTCAGCTTCTCAGATGACCAAGATGGTGCTGCAGATGGTGCTGAGGATGGAGAA
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr2                      9710 376 - 192599291 cctgtcTATT-----TCAGGTCAAAGGTGCCTACATGTTCCTTCTAGCTTTGTTCC-CCTGATGTTTCTTGCCA--CCTGCTACTCCTCTCTGAGCTGCTTTTCCAGGT-TCCACAG-----GGTTCAGCTGTCCGTGGTAGACATGAGGGCAGAGAATGAGGTGGTTGGGTTCCACTTA----CCTTTCTATCTTCTTGCAGTATGGCTGTCTCTTGACTGGCACCATGTAGACTTTTGAGGGCAGACAGGAGTCTGTGGAG-AGATGCTGGGGACGTTGAGCAACAGCAG--TGGGGGTGGGAGGCAGAAATGAGGACAAGAACGTTCACCTTGTATTTCTCTCAGCTTCTCAGATGACCAAGGTGGTGCTGCAGATGGTGCTGAGGAAGGAGAA
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     18370 376 + 192460366 cctgtcTATT-----TCAGGTCAAAGGTGCCTACATATTCCTTCTAGCTTTGTTCC-CCTGATGTTTCTTGCCA--CCTGCTACTCCTCTCTGAGCTGCTTTTCCAGGT-TCCACAG-----GGTTCAGCTGTCCGTGGTAGACATGAGGGCAGAGAATGAGGTGGTTGGGTTCCACTTA----CCTTTCTATCTTCTTGCAGTATGGCTGTCTCTTGACTGGCACCATGTAGACTTTTGAGGGCAGACAGGAGTCTGCGGAG-AGATGCTGGGGACGTTGAGCAACAGCAG--TGGGGGTGGGAGGCAGAAATGAGGACAAGAACGTTCACCTTGTATTTCTCTCAGCTTCTCAGATGACCAAGGTGGTGCTGCAGATGGTGCTGAGGAAGGAGAA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     17104 381 - 187378091 CCTGTCTCTT-----TCAGGTCAAAGGTGCCTACATGTTCCTTCTAGCTTTGTTCC-CCTGATGTTCCTTGCCA--CCTGCTACTCCTCTCTGAGCTACTTTTCCAGGT-TCCACAGGGAGAGGTTCAGCCTTCCGTGGTAGACATGAGGGCAGAGAATGAGGTGGTTGGTTTCCACTTA----CCTTTCTATCTTCTTGCAGTATGACTGTCTCTTGACTGGTACCATGTAGACTTTTGAGGGCAGACAGGAGTCTGCGGAG-AGATACTGGGGACATTGAGCAACAGCAG--TGGGTGTGGGAGGCAGAAATGAGGACAAGAACATTCACCTTGTGTTTCCCTCAGCTTCTCAGATGACCAAGGTGGTGCTGCAGATGGTGCAGAGGAAGGAGAA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   367235 381 -  91754291 CCGGTCTATT-----TCAGGTCAAAGGTACCTACATGTTCCTTCTAGCTTTGTTCC-CCTGATGTTCCTTGCCA--CCTGCTACTCCTCTCTGAGCTACTTTTCCAGGT-TCCACAGGGAGAGGGTCAGCTGTCCGTGGTAGACATGAGGGCAGAGAATGAGGTGGTTGGGTTCCACTTA----CCTTTCTATCTTCTTGCAGTATGGCCATCTCTTGACTGGTACCATGTAGACTTTTGAGGGCAGACAGGAGTCTTCGGAG-AGATACTGGGGACGCTGAGCAACAGCAG--TGGGGGTGGGAGGCAGAAATGAGGACAAGAACGTTCACCTTGTGTTTCTCTCAGCTTCTCAGATGACCAAGGTGGTGCTGCAGATGGTGCTGAGGAAGGAGAA
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   878747 376 -  74750902 CTTGACAATCTGAGATCAGGTCAAAGGTG-CTACGCGT--CTTCTAGCTTTGTTT--CATGATG-TCCTTGCCA---CTGCTACTCCTCTCTGAGCTACTTTTCCAGGT-TCCACAGAGAGAGGTTAAGCTGTCTGTGGTAGAGAAGAG----GAGAAAGAGGTGGCTGGGGTCCACTTA----ACGTTCTCTCTTCTTGCAGTATGGATGCCTCTTGACTGGCAGCAGGTAGACTTTTGAGGGGAGACAGGAGTCTGCAGAG-AGATGCCGGGGATGCTGGGCAGCAGCAG--TGGGTGTGGGAGGCAGAAATGATGACAGGAGCCTTCACCTTGTGTTTCTTTCAGCTTCTCAGATGACCAAGATGGGGCTGCAGATGGTGCTGAGGATGGAGAA
i calJac3.chr17                I 68 C 0
s mm10.chr16                    65401183 340 -  98207768 TCTATGCATT-----TCACGCTCAAAACTTCTTCACGTTCCTCTCGACTCCCTT------------------CA--CCTGCTGCTCTCCCCCAAGCCTCTCTT-TAGGT-CCCACAGGGAGAGGCTGAGCTATCAGTGGTGAAAACCAGGCTAGGAAAGGTGGTGGGC--------CCAA----CCTTT------TCTTGCTCTATGTATGCCGCTTGGCC----TTGCTTGGAGATGTCAGAGCAG--AAGAGTCCTCAGAG-AGGTGTTGGGGATGTTGACCAGAAGTGGGCTGGGGGAGAGGAGCACGGATGAAGACAAG-GCCTTCACCCTGTGTT----CCAGCCTTTCACACTCCCAAGATGGTGCTACAGATGGTGCTGAGGACCGAGAG
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29036800 372 +  31377067 tttgtcCATT-----TCATGTCAAAAGTGCC--CACGTTCCTCCCAGCTTTGTCTCACCCCCCACCCCACCCCACCCCTGCTGCTCCCCTCTGAGCTACTTTCCCAGATGCCCACAGGGAGAGCTTAATCTGGTGGT--TGGGGATCAGGGTGGGGAGTGGGGCGATGGGGTTCCCCCCAACGGCCCTTCCATC-TCTTGAAATACAGATGCCTCTTGACCTGC-CCATGTAGACTTTCGAGGG---------GTTTGCAGAGTGGGAGCTGAGGAGGTTAGGCAGCCGGAG--GGGGCGTGGGAGCCCCGGGTGGGGACAGGAGCTGCCGCCTGGAGTTTC--TCAGCTTCTCAGA-ACCCCGGGTGGTGCCGCGGGTGGTGCTGAGGCCGCAGAA
i canFam3.chr33                C 0 C 0

a score=7011.000000
s hg38.chr3_KI270935v1_alt         79292 4 +    197351 CCCA
s panTro4.chr3_GL389630_random     41774 4 +    103936 CCCA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199730425 4 + 202140232 CCCA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120819712 4 + 123690457 GCCA
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr2                     10086 4 - 192599291 CCCA
i rheMac3.chr2                 C 0 I 11
s papAnu2.chr2                     17485 4 - 187378091 CCCA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   367616 4 -  91754291 CCCA
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   879123 4 -  74750902 CCCA
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65401523 4 -  98207768 GCCA
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29037172 2 +  31377067 GC--
i canFam3.chr33                C 0 C 0
e macFas5.chr2                     18746 0 + 192460366 C

a score=168213.000000
s hg38.chr3_KI270935v1_alt         79296 80 +    197351 CCAAGCCCCGCTAGGAGCCACCTAGACTGGATGCAGAGCATGGTGAGCTCCCTGCAGGTTCTCTGAGAAGGGGTGGATGG
s panTro4.chr3_GL389630_random     41778 80 +    103936 CCAAGCCCCGCTAGGAGCCACCTAGACTGGATGTAGAGCATGGTGAGCTCCCTGCAGGTTCTCTGAGAAGGGGTGGATGG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199730429 80 + 202140232 CCAAGCCCCGTTAGGAGCCACCTAGACTGGATGCAGAGCACAGTGAGCTCCCTGCAGGTTCTCTGAGAAGGGGTGGATGG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120819716 80 + 123690457 CTAAGCCCCGCTAGGAACCACCTAGACTGGATGCAGAGCACGGTAAGCTCCCGGCAGTTTCTCCAAGAAGGGGTGGATGG
i nomLeu3.chr11                C 0 C 0
s papAnu2.chr2                     17489 80 - 187378091 CCAAGCCCCGCTAGGAGCCACCTAGACCGGATGCAGAGCATGGTGAGCTCCCTGTAGGTTCTCTGAGAAGGGGTGGATGG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   367620 80 -  91754291 CCAAGCCCCGCTAGGAGCCACCTAGACCGGATGCAGAGCATGGTGAGCTCCCTGTAGGTTCCCCGAGAAGGGGTGGATGG
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   879127 80 -  74750902 CCCAGCCCTGCTAGGAGCCGTCTAGACTGGGTGCAGAGCATGGTAAGCTCCCTGGAAGCTCTCCAAGAAGGGGTGGATGG
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65401527 69 -  98207768 CTCGACTCAGCCAGGAACAATCAAGATTTGGTACAAAACATGGTGAGTGCCCTG-----------AGCGGGGGTGGGGGG
i mm10.chr16                   C 0 I 1124
s canFam3.chr33                 29037174 78 +  31377067 CCGCGCCCTGGGAGACGCCGTCTGGGCC-GACGCAGAGCGCGGGGAGGGCCCTAGACGGTCTCCCAGACGGGGCGGCGA-
i canFam3.chr33                C 0 C 0
e rheMac3.chr2                     10090 11 - 192599291 I
e macFas5.chr2                     18746  0 + 192460366 C

a score=652615.000000
s hg38.chr3_KI270935v1_alt         79376 329 +    197351 CAGCCTGCTCCTTGCCTTTGTGCCCTCCAGGCCCCAAAGTCAGGGA------ACCAAAAGAAGAAAGGGGCCGTAGCTAGGGCAGAGCTCCACTGCAATGATTGTTTTAGGGGTAGGAGCCAGGATTGCCGtctgtggacactgaaatttgaatctcatatacttt-----tgtgacaaaacattctt-cctcttttgttcttctcctaccatctaaaaa-----------------------------------tgtagaaaacattcttagcctatgagttgcac--aaaaacaggcagt-ggccagatttggcccatagaccatagtttgctgacttctg------CCCTAAATCATCCTCCAT----TTCTTTCCTTCTGTGTCC
s panTro4.chr3_GL389630_random     41858 334 +    103936 CAGCCTGCTCCTTGCCTTTGTGGCCTCCAGACCCCAAAGTCAGGGA------ACCAAAAGAAGAAAGGGGCCATAGCTAGGGCAGAGCTCCACTGCAATGATTGTTTTAGGGGTAGGAGCCAGGATTGCtgtctgtggacactgaaatttgaatctcatatacttttcatgtgtgacaaaacattatt-cttcttttgttcttctcctaccatctaaaaa-----------------------------------tgtagaaaacattcttaacctatgagttgcac--aaaaacaggcagt-ggccagatttggcccatagaccatagtttgctgacttctg------CCCTAAATCATCCTCCAT----TTCTTTCCTTCTGTGTCC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199730509 333 + 202140232 CAGCCTGCTCCTTGCCTTTGTGGCCTCCAGACCCCAAAGTCAGGGA------ACCAAAGGGAGAAAGGGGCCGTAGCTAGGGCAGAGCTCCACTGCAATGATTGTTTCAGGGGTAGGAGCCAGGATTGCtgtctgtggacactgaaatttgaatctcatatagttttcatgtgtcacaaaactttatt-cttcttttgttcttctcctaccatctaaaaa-----------------------------------tgtagaaaacattcttag-ctatgagttgcac--aaaaacaggcagt-ggccagatttggtccatagaccatagtttgctgacttctg------CCCTAAATCATCCTCCAT----TTCTTTCCTTCTGTGCCC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120819796 334 + 123690457 CAGCCTGCTCCTTGCCTTTGTGGCCTCCAGACCCCAAAGTCAGGGA------ACCAAAGGGAGAAAGGGGCCGTAGCTAGGGCCGAGCTCCACTGCAATGATTGTTTTAGGGGTAGGAGCCAGGATTGCtgtctgtggacactgaaatttgaatctcatatacttttcatgtgtcacaaaacattatt-cttcttttgttcttctcctaccatctaaaaa-----------------------------------tgtagaaaacattcttagcctatgagttgcac--aaaaacaggcagt-ggccagatttggtccatagaccatagtttgctgacttttg------CCCTAAATCATCCTCCAT----TTCTTTCCTTCTGTGTCC
i nomLeu3.chr11                C 0 C 0
s papAnu2.chr2                     17569 337 - 187378091 CAGCCTGCTCCTTGCCTTTGTGGCCTCCAGACCCCAAAGTCAGGGA------ACCAAAGGGAGAAAGGGGCTGTATCTAGGGCAGAGCTCCACTGCAATGATTGTTGTAGGGGTAGGAGCCAGGATTG--GTctgtggacactgaaatttgaatctCATATACttttcatgtgtcacaaaacattattccttcttttgttcttttcctaccatctaaaaa-----------------------------------tgtagaaaacattcTTAGCCTATGAGTtgcac--aaaaacaggcagt-ggccagatttggcccatagaccgtagtttgctgacctctg------cccTAAGTCATCCtccattctcttctttccttccgtGTCC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   367700 339 -  91754291 CAGCCTGCTCCTTGCCTTTGTGGCCTCCAGACCCCAAAGTCAGGGA------ACCAAAGGGAGAAAGGGGCTGTAGCTAGGGCAGAGCTCCACTGCAATGATTGTTTTAGGGGTAGGAACCAGGATTGCTGTCCGtggacactgaaatttgaatcgcatatacttttcatgtgtcacaaaacattatttcttcttttgttcttttcctaccatctaaaaa-----------------------------------tgtagaaaacattcttagcctatgagttgcac--aaaaacaggcagt-ggccagatttggcccatagaccgtagtttgctgacctctg------CCCTAAGTCATCCTCCATTCTCTTCTTTCCTTCTGTGTCC
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   879207 337 -  74750902 CAGCCTACTCCTTGCCTTTGTGGCCTCCAGACCCCAAAGTCAGGGA------ACCAGAGGGAGAAAGGGGCCTTCGCTATGGCAGAGCTCCACTGCAATGATGGTTTTAGGGATAGGAGCCAGGATTGCtgtctgtggacactgaaatttgaacctcatctacttttcatgtgtcacaaaacattatt-ctt-ttttgtttttctcctgccatctaacaa-----------------------------------cacagaaaacattcttagcctatgagtcgtac--agacacaggcagt-ggccagatttgccccatagactgtagtttgctgacctctg------CCATAGGTCATCCTCCATCCTCTTCTTTCCTTCTGTGTCC
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29037252 374 +  31377067 CAAGCTGCCCCTACCCCC--TGGCCTCCAGCCCCCAAAGTCAGGGAATAACTACCAGTCAGGAAAAGAGACCCGAG-TGGGGCAGAGCCCTGCAGCAACCATGGTTTTAGGGCCCGGAGCCGTGGTTCCGGGCCGtggacactgacactgacattttatataattttcatgtgtcatgaaatattctt------ttgactttttttcaaccacttaaaagcgtgaaaagcattcttttttttttttttttttttttgtgaaaagcattcttaacttgtgatctggaccaaacaacctgcagcaagcccaatgcag-ccgcggattgtggtttgctgccctctgCGTCACCTCTAAATCGTCCTTCG-----TATTTCTCTTCTGTGCCC
i canFam3.chr33                C 0 I 1
e rheMac3.chr2                     10090  11 - 192599291 I
e mm10.chr16                    65401596 1124 -  98207768 I
e macFas5.chr2                     18746   0 + 192460366 C

a score=441467.000000
s hg38.chr3_KI270935v1_alt         79705 257 +    197351 Ttgttactgacaaagccactttccctaaaatggggtctttccctgtttggtgccatgaagccaatatgcaaaaccgaaagtgagcctcaagcagtgcaggctttatttggtggccatggaattgagaagtgagagcttggctcacaaatcaacttttctgctcgtgagac-ccaggaagtcacagatacagggcatctttagtgaaggggctgagcattaaaagcaaggggaggagtggccaggtg-caatggctcact
s panTro4.chr3_GL389630_random     42192 257 +    103936 Ttgttactgacaaagccactttccctaaaatggggtctttccctgtttggtgccatgaagccaatatgcaaaaccgaaagtgagcctcaagcagtacaggctttatttggtggccatggaattgagaagtgagagcttggctcacaaatcaacttttctgctcgtgagac-ccaggaagtcacagatacagggcatctttagtgaaggggctgagcattaaaagcaaggggaggagtggccaggtg-caatggctcact
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199730842 257 + 202140232 Ttgttactgacaaagccacttcccctaaaatggggtctttccctgtttggtgccatgaagccaatatgcaaaaccaaaagtgagcctcaagcagtgcaggctttatttgttggccacggaattgagaagtgagagcttggctcacaaatcaacttttctgctcatgagac-ccaggaagtcacagatacagggcatctttagtgaaggggctgagcattaaaagcaaggggaggagtGgccaggtg-caatagctcact
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120820130 257 + 123690457 Ttgttactgacaaagccacttcccctaaaatggggtctttccctgtttggtgccatgaagccaatatgcaaaaccaaaagtgagcctcaagcagtgcaggctttatttggtggccatggaattgagaagtgagagcttggctcacaaatcaacttttctgctcatgagac-ccaggaagtcacagatatagggcatctttagtgaaggggctgagcattaaaagcaaagggaggagtggccaggtg-caatggctcact
i nomLeu3.chr11                C 0 C 0
s papAnu2.chr2                     17906 256 - 187378091 TTGTTACTGACAAAGCCACTTTCCCTAAAATGAGGTCTTTCCCTGTTTGGTGCCATGAAGCCAATATGCAAAACCCAAACTGAGCCTCAAGCAGTGCAGGCTTTATTTGGT-GCCATGGAATTGAGAAGTGAGAGCTTGGCTCACAAATCAACTTTTCTGCTCGTGAGAC-CCAGGAAGTCACAGATATAGGGCACCTTTAGTGAAGGGGCTGAGCATGAAAAGCAAGGGGAGGAGTggccaggag-caatggctcacT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   368039 249 -  91754291 Ttgttactgacaaagccacttcccctaaaatggggtctttccctgtttggtgccatgaagc-------caaaaccaaaactgagcctcaagcagtgcaggctttatttggt-gccatggaattgagaagtgagagcttggctcacaaatcaacttttctgctcgtgaggc-ccaggaagtcacagatataggccacctttagtgaaggggctgagcatgaaaagcaaggggaggagtggccaggag-caaaggctcact
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   879544 248 -  74750902 Ttgttactgacaaagccactccccctgaaatggggtctttccctgtttggtgccatgaagccaatatgtgaaacggaaagtgagggtcaagcagtacaggctttatttggtggccgtggaactgagaagtgagcgcttggctcgcaaatcaccatttctgcttgtgagactctgggaagtcgcagatataga-----------aagggggctgagcattaaaagcaagaggaggagtggccacgtgccaatggcttact
i calJac3.chr17                C 0 C 0
e rheMac3.chr2                     10090  11 - 192599291 I
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037626   1 +  31377067 I
e macFas5.chr2                     18746   0 + 192460366 C

a score=29025.000000
s hg38.chr3_KI270935v1_alt         79962 26 +    197351 cccataaacccagaa-ctttgggaggc
s panTro4.chr3_GL389630_random     42449 26 +    103936 cccataaacccagaa-ctttgggaggc
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199731099 26 + 202140232 ctcataaacccagaa-cttcgggaggc
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120820387 26 + 123690457 cccataaacccagaa-cttcgggaggc
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     18746 16 + 192460366 CCCATAAACCCAGAAc-----------
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     18162 14 - 187378091 CCCAT-AACCCAGAA------------
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   368288 15 -  91754291 cccataaacccagaa------------
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   879792 26 -  74750902 cctataaacccagca-ctttgggaggc
i calJac3.chr17                C 0 C 0
e rheMac3.chr2                     10090 11 - 192599291 I
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037626  1 +  31377067 I

a score=1218365.000000
s hg38.chr3_KI270935v1_alt         79988 432 +    197351 caaaatgagaggattgc-tgagaccaggagttcgagaccatcctggtcaacatagtgatacacccccatctctacaaaaataaaaatgaaaaaagcaaggggaggaatcatgtgttttctgggtctgggtggagaaattttcaaaaccagagtgccaccttcctatttgtttttttatgt-tattttttcccatcattgtcatgttggttgttgactgttacggtgttagtgggactgtcatttaacatggaaattagattataatgaagttagaggtcaaatgagctgccatcttggattccatcagtcttagctggtttgatcaccag----ggagaagtttggacctcaggcatcctgcttcctaaagataaacagtgttaaggcagggtagatattcacggaggtcatgtgggtattgcact-----ggatgacaTCTT
s panTro4.chr3_GL389630_random     42475 432 +    103936 caaaatgagaggattgc-tgagaccaggagtttgagaccatcctggtcaacatagtgatacacccccatctctacaaaaataaaaatgaaaaaagcaaggagaggaatcatgtgttttctgggtctgggtggagaacttttcaaaaccagagtgccaccttcctatttgtttttttatgt-tttttttccccatcattgtcatgttggttgttgactgttaaggtgctagtgggactgtcatttaacatggaaattagattataatgaagttagaggtcaagtgagctgccatcttggattccatcactcttagctggtttgatcaccag----ggagaagtttggacctcaggcatcctgcttcctaaagataaacagtgttaaggcagggtagatatgcatggaggtcatgtgggtattgcact-----ggatgacaTCTT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199731125 431 + 202140232 caaaatgagaggattgc-tgagaccaggagtttgagaccatcctggtcaatgtagtgatacccccctatctctacaaaaataaaaatGAAaagagcaaggggaggaatcgtgtgttttctgggtctgggtggagaacttttcaaaaccagagtgccaccttcctatttgtttttttatgt-t-ttttttcccatcattgtcatgttggttgttgactgttacagtgctagtgggactgtcatttaacatggaaattagattataatgaagttagaggtcaagtgagctgccatcttggattcgatcagtcttagctggtttgatcaccag----ggagaagtttggacttcaggcatcctgcttcctaaagataaacagtgttaaggcagggtagatattcacggaggtcatgtgggtattacact-----ggatgacaTCTT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120820413 430 + 123690457 caaaatgagaggattgc-taagaccaggagttcgagaccatcgtcgtcaacatagtgatacccccccatctctacaaaaataaaaatgaaaaaagcaaggggaggaatcctgtgttttccgggtctgtgtggagaacttttcaaaaccacagtgccaccttgctatttgtttttttatgg---ttttttctcatcattgtcatgttggttgttgactgttacggtgctagtgggactgtcatttagcatggaaattagatcataatgaagttagaggtcaagtgaggtgccatcttggattccatccgtcttagctggtttgatcaccag----ggagaagtttggacctcaggcatcctgcttcctaaagataaacagtgttaaggcagggtagatattcacggaggtcatgtgggtattacact-----ggatgacaTCTT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr2                     10101 427 - 192599291 caagatgagaggattgc-cgagaccaggagttcgagaccatcctggttaacatagtgatac-tccccatctctacaaaactaaaaatGAAAAAAgtaaggggaggaatcatgtgttttctgggtctgggtggagaacttttcaaaaccagagtgccaactttctatttgtttttta-----tgtttttttccatcattgtcatggtggttgttgactgttatggtgctagcgggactaccatttagcatggaaattagattataacgaagttagaggtcaagtgagctgccatcttggattccatcagtcttagctggtttgatcaccag----ggagaagttcggacctcaggcatcctgtttcctaaagataaacagagttaaggcagggtaggtattcacggaggtcatgtgggcattacact-----ggacgacaCCTT
i rheMac3.chr2                 I 11 C 0
s macFas5.chr2                     18762 426 + 192460366 -aagatgagaggattgc-cgagaccaggagttcgagaccatcctggttaacatagtgatac-tccccatctctacaaaactaaaaatgaaaaaagtaaggggaggaatcatgtgttttctgggtctgggtggagaacttttcaaaaccagagtgccaactttctatttgtttttta-----tgtttttttccatcattgtcatggtggttgttgactgttatggtgctagcgggactaccatttagcatggaaattagattataacgaagttagaggtcaagtgagctgccatcttggattccatcagtcttagctggtttgatcaccag----ggagaagttcggacctcaggcatcctgtttcctaaagataaacagagttaaggcagggtaggtattcacggaggtcatgtgggcattacact-----ggacgacaTCTT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     18176 429 - 187378091 CAAGATGAGAGGATTGC-CGagaccagaagttcgagaccatcctggttaacatagtgatac-tccccgtctctacaaaaacaaaaatgaaaaaagcaagggGAGGAATCATGTGTTTTCTGGGTCTGGGTGGAGAACTTTTCAAAACCAGAGTGCCAACTTcctatttgtttttta--gt-ttttttttttaatcattgtcATGGTGGTTGTTGACTGTTACAATGCTAGCGGGACTGTCATTTAGCATGGAAATTAGATTATAATGAAGTTAAAGGTCAAGTGAGCTGCCATCTTGGATTCCATCAGTCTTAGCTGGTTTGATCACCAG----GGAGAAGTTCGGACCTCAGGTATCCTGTTTCCTAAAGATAAACAGAGTTAAGGCAGGGTAGGTATTCACGGAGGTCATGTGGGCATTACACT-----GGATGACATCTT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   368303 429 -  91754291 caagatgagaggattgc-cgagaccaggagttcgagaccgtcctggttaacatggtgatac-tccccatctctacaaaaCTAAAAATGAAaagagcaaggggaggaatcatgtgttttctgggtctgggtggagaacttttcaaaaccagagtgccaacttcctatttgtttttta--tg-ttttttttcccatcattgtcatggtagttgttgactgttatggtgctagcgggactgctatttagcatggaaattagattataaggaagctagaggtcaagtgagctgccatcttggattccatcagtcttagctggtttgatcaccag----ggagaagttcggacctcaggcatcctgtttcctaaagataaacagagttaaggcagggtaggtattcacggaggttatgtgggcattacact-----ggatgacaTCTT
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   879818 419 -  74750902 caagatgagaggattgcttgagaccaggagttcgagaccagcctggtcaacgtaatgagac--cctcatctctacaaaaataaaaatAAaaaaagcaaagggaggaat--tgtgttttctgggtctgggtggagaagttttccaaacc-gagtgccactttcctatctgtttttttatgtttttttccccccagcattgtcacggtgcttgattactgttatggtgccagtggaagtgtgatttagcatggaaattagattataatgaagttagaggtcaggtgagctgccatcttggattccaccagtcttagctggtttgatcaccagctaaggagaggttctgacctcaggcatcctgtttcctaa-------------------agggtagatattcaccaaggtcatgtaggcattacattacacgggataacaTCTT
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037626   1 +  31377067 I

a score=811273.000000
s hg38.chr3_KI270935v1_alt         80420 253 +    197351 GGCTTCAGCCCTGATCTGTTCAGAGCCCTCAGCACGGTACTGGAGGAGAGGCCTTGGGCCGCATCGTGGCATATTGTG-GCTTTGGGGAGAAagaaaagcag-atagtgcaatggaaagagcgtggacttgagagtc---a----gacttgacttcaactcctagctctaccacttaccacctaggtgacctcaag--ccactttctcagcctttctgagactctgtatcctcatgtgtatcctagagtttgtctgatagggct
s panTro4.chr3_GL389630_random     42907 253 +    103936 GGCTTCAGCCCTGATCTGTTCAGAGCCCTCAGCACGGTGCTGGAGGAGAGGCCTTGGGCCACATCGTGGCATATTGTG-GCTTTGGGGAGAAagaaaagcag-atactgcaatggaaagagcgtgcacttgagagtc---a----tacatgacttcaactcctagctctaccacttaccacctaggtgacctcaag--ccactttctcagcctttctgagactctgtttcctcatgtgtatcctagagtttctctgatagggct
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199731556 253 + 202140232 GGCTTCAGCCCTGATCTCTTCAGAGCCCTCAGCACAGTACTGGAGGAGAGTCCTTGGGCTGCATCATGGCATATTGTG-GCTTTGGGGAGAAagaaaagcag-atagtgcaatggaaagagcgtggacttgagagtc---a----gacttgacttcaactcctagctctaccactcaccacctaggtgacctcaag--ccactttctcagcctttctcagactctgtttcctcatgcgtatcctagagtttgtctgatagggct
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120820843 253 + 123690457 GGCTTCAGCCCTGATCTGTTCCGAGCCCTCAGCACAGTACTGGAGGAGAGGCCTTGGGCTGCATTGTGGCATATTGTG-GCTTTGGGGAGAAagaaaagcag-atagtgcaatgaaaagagcgtgggcttcagagtc---a----gacttgacttcaactcctagctctaccacttaccacctaggtgacctcaag--ccactttctcagcctttctgagcctctgtttcctcatatgtatcctagagtttgtctgatagggct
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr2                     10528 252 - 192599291 GGCTTTAGCCCTGATCTGTCCAGTGCCCTCAACCCAGTACTGGAGGAGAG-CCCTGAGCCACATCATGGCATATTGTG-GCTTTGGGCAGAAagaaaagcgg-atagtgcaatggaaagagcatgggcttgagagtc---a----gacttgacttcaactcctagctccaccacttaccacctaggtgacctcaag--ccactttctcagtctttctgagcctccatttcctcatgtgtgtcctagagcttgtctgatagggct
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     19188 252 + 192460366 GGCTTTAGCCCTGATCTGTCCAGTGCCCTCAACCCAGTACTGGAGGAGAG-CCCTGAGCCACATCATGGCATATTGTG-GCTTTGGGCAGAAagaaaagcgg-atagtgcaatggaaagagcatgggcttgagagtc---a----gacttgacttcaactcctagctccaccacttaccacctaggtgacctcaag--ccactttctcagtctttctgagcctccatttcctcatgtgtgtcctagagcttgtctgatagggct
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     18605 252 - 187378091 GGCTTCAGCCCTGATCTGTCCAGTGCCCTCAACCCAGTACTGGAGGAGAG-CCCTGGGCTGCATCATGGCATACTGTG-GCTTTGggcagaaagaaaagcag-atagTGCGATGGAAAGAGCATGGGCTTGAGAGTC---A----GACTTGACTTCAACTCCTAGCTCTACCACTTACCACCTAGGTGACCTCAAG--CCACTTTCTCAGTctttctgagcctccatttcctcatgtgTATCCTAGAGCTTGTCTGATAGGGCT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   368732 252 -  91754291 GGCTTCAGTCCTGATCTGTCCAGTGCCCTCAACCCAGTACTGGAGGGGAG-CCCTGGGCTGCATCGTGGCATATTGTG-GCTTTGGGCAGAAagaaaagcag-atagtgcaatggaaagagcatgggcttgagagtc---a----gacttgacttcaattcctagctctaccacttaccacctaggtgacctcaag--ccactttctcagtctttctgagcctccatttcctcatgtgtatcctagagcttgtctgatagggct
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   880237 253 -  74750902 GGCCTCAA----GATCTGTCCAGAGCCCTCTGCCCAGCACTGGAGGAGAGGCCTTGGCCCACATCCTGGCATATTATG-ACTTTGGGCAGAAagaaaagcag-atagtgcaatggaaagagggtgggcttgatagtc---agatggacttgagttcaactcctagctctaccgcttactgcctgggtgacctcaag--ccactttctcagcctttctgagcctcagtttcctcatgtgtctcctagagcttgcctgataggggc
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29037627 244 +  31377067 GGCTTCAGCCCTGGCTTGTCCAGAGCTCTCTGCCCGGCACTGGAACGGAGGCCTCAGCCTCCACTT-----TATTGTGAACATGGGGCAGAAagaaaggcaacgtgggacaatggaaggagcatggacttgggagccgaaa----gttctgggtccagatcccacctctaccacgtgttacctggaggaactgacgtacctccttctc-----------gcttccctttccccatctgtgtcctagagcttgccttgcagagct
i canFam3.chr33                I 1 I 32
e mm10.chr16                    65401596 1124 -  98207768 I

a score=12389.000000
s hg38.chr3_KI270935v1_alt         80673 5 +    197351 atagt
s panTro4.chr3_GL389630_random     43160 5 +    103936 gtagt
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199731809 5 + 202140232 atagt
i ponAbe2.chr3                 C 0 I 35
s nomLeu3.chr11                120821096 5 + 123690457 atagt
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr2                     10780 5 - 192599291 acagt
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     19440 5 + 192460366 acagt
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     18857 5 - 187378091 ATAGT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   368984 5 -  91754291 atagt
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   880490 5 -  74750902 atagg
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I

a score=16132.000000
s hg38.chr3_KI270935v1_alt         80678 8 +    197351 gagaatta
s panTro4.chr3_GL389630_random     43165 8 +    103936 gagaatta
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120821101 8 + 123690457 gagaatta
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr2                     10785 8 - 192599291 gagactta
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     19445 8 + 192460366 gagactta
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     18862 8 - 187378091 GAGAATTA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   368989 8 -  91754291 gagactta
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   880495 8 -  74750902 gaggattg
i calJac3.chr17                C 0 I 7
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e ponAbe2.chr3                 199731814 35 + 202140232 I

a score=10191.000000
s hg38.chr3_KI270935v1_alt         80686 6 +    197351 attgaa
s panTro4.chr3_GL389630_random     43173 6 +    103936 gttgaa
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120821109 6 + 123690457 attgaa
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr2                     10793 6 - 192599291 attgaa
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     19453 6 + 192460366 attgaa
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     18870 6 - 187378091 ATTGAG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   368997 6 -  91754291 attgaa
i chlSab2.chr15                C 0 C 0
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e calJac3.chr17                   880503 7 -  74750902 I
e ponAbe2.chr3                 199731814 35 + 202140232 I

a score=43932.000000
s hg38.chr3_KI270935v1_alt         80692 23 +    197351 ttaaGTATAGTGAGAATTAAGCC
s panTro4.chr3_GL389630_random     43179 23 +    103936 ttaagtatagtgagaattaagcc
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120821115 23 + 123690457 ttaaGTATAGTGAGAATTAAGCC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr2                     10799 23 - 192599291 ttaaGTATAGTGAGAATTAAGCC
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     19459 23 + 192460366 ttaaGTATAGTGAGAATTAAGCC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     18876 22 - 187378091 -TAAGTATAGTAAGAATTAAGCC
i papAnu2.chr2                 C 0 I 23
s chlSab2.chr15                   369003 23 -  91754291 ttaaGTATAGTGAGAATTAAGCC
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   880510 14 -  74750902 tcaggcatagagag---------
i calJac3.chr17                I 7 C 0
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e ponAbe2.chr3                 199731814 35 + 202140232 I

a score=11831.000000
s hg38.chr3_KI270935v1_alt         80715 13 +    197351 AGGTCTGGAGAGG
s panTro4.chr3_GL389630_random     43202 13 +    103936 aggtctggAGAGG
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120821138 13 + 123690457 AGGTCTGGAGAGG
i nomLeu3.chr11                C 0 T 28
s rheMac3.chr2                     10822 13 - 192599291 AGGTATGGAGAGA
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     19482 13 + 192460366 AGGTATGGAGAGA
i macFas5.chr2                 C 0 C 0
s chlSab2.chr15                   369026 13 -  91754291 AAGTATGGAGAGA
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   880524  2 -  74750902 ------gg-----
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e papAnu2.chr2                     18898 23 - 187378091 I
e ponAbe2.chr3                 199731814 35 + 202140232 I

a score=4365.000000
s hg38.chr3_KI270935v1_alt         80728 3 +    197351 CCT
s panTro4.chr3_GL389630_random     43215 3 +    103936 CCT
i panTro4.chr3_GL389630_random C 0 C 0
s rheMac3.chr2                     10835 3 - 192599291 CCT
i rheMac3.chr2                 C 0 I 231
s macFas5.chr2                     19495 3 + 192460366 CCT
i macFas5.chr2                 C 0 C 0
s chlSab2.chr15                   369039 3 -  91754291 CCT
i chlSab2.chr15                C 0 I 18
s calJac3.chr17                   880526 3 -  74750902 cct
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e papAnu2.chr2                     18898 23 - 187378091 I
e ponAbe2.chr3                 199731814 35 + 202140232 I
e nomLeu3.chr11                120821151 28 + 123690457 T

a score=2759.000000
s hg38.chr3_KI270935v1_alt         80731 8 +    197351 GGCTACTG
s panTro4.chr3_GL389630_random     43218 8 +    103936 GGCTACTG
i panTro4.chr3_GL389630_random C 0 C 0
s macFas5.chr2                     19498 8 + 192460366 AGGTCCTG
i macFas5.chr2                 C 0 C 0
s calJac3.chr17                   880529 8 -  74750902 ggcTCCTG
i calJac3.chr17                C 0 C 0
e rheMac3.chr2                     10838 231 - 192599291 I
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e chlSab2.chr15                   369042 18 -  91754291 I
e papAnu2.chr2                     18898 23 - 187378091 I
e ponAbe2.chr3                 199731814 35 + 202140232 I
e nomLeu3.chr11                120821151 28 + 123690457 T

a score=1534.000000
s hg38.chr3_KI270935v1_alt         80739 3 +    197351 GTG
s panTro4.chr3_GL389630_random     43226 3 +    103936 GTG
i panTro4.chr3_GL389630_random C 0 C 0
s macFas5.chr2                     19506 2 + 192460366 -TG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     18921 3 - 187378091 GTG
i papAnu2.chr2                 I 23 C 0
s calJac3.chr17                   880537 3 -  74750902 GTT
i calJac3.chr17                C 0 C 0
e rheMac3.chr2                     10838 231 - 192599291 I
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e chlSab2.chr15                   369042 18 -  91754291 I
e ponAbe2.chr3                 199731814 35 + 202140232 I
e nomLeu3.chr11                120821151 28 + 123690457 T

a score=107811.000000
s hg38.chr3_KI270935v1_alt         80742 139 +    197351 --------------AGTGAGGTAACTGAGATCAGGTATGGAGA-GGACTGGCTCCTGGTGAGT--------------GAGTTAATTGAGATGAGGTATGGAG-GGACCTGTCTCCTGGTGACT--------------GAGTTAATTGAGATGAGGTGTGGAG-GGACCTGGCTCCTGGTGAGTG--------------
s panTro4.chr3_GL389630_random     43229 139 +    103936 --------------AGTGAGGTAACTGAGATCAGGTATGGAGA-GGCCTGGCTCCTGGTGAGT--------------GAGTTAATTGAGATCCATTATGGAG-GGACCTGTCTCCTGGTGAGT--------------GAGTTAATTGAGATCCGGTATGGAG-GGACCTGGATCCTGGTGAGTG--------------
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120821123 136 + 123690457 --------------AGTGAG--AATTAAG-CCAGGTCTGGAGA-GGCCTGGCTCCTGGTGAGT--------------GAGTTAATTGAGATGAGGTATGGAG-GGACCTGGCTCCTGGTAAGT--------------GAATAAATTGAGATGAGGTATGGAG-GGACCTGGCTCCTGGGGAGTG--------------
i nomLeu3.chr11                T 28 C 0
s macFas5.chr2                     19508 137 + 192460366 --------------AGTGAATTAATTGAGATCAGGTAGGGAGG-GACGTGGCTCCTGGTCAGT--------------GAATTAATTGAGATCAGGTAGGGAG-GGACGTGGCTCCT-GTGGGT--------------GAATTAATTGAGATCAGGTGGCGAG-GGACGTGGCTCCT-GTGGGTG--------------
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     18924 137 - 187378091 --------------AGTGAATTAACTGAGATCAGGTGGGGAGG-GGCGTGGCTTCT-GTCCGT--------------GAATTAATTGAGATCAGGTAGGGAG-GGACGCGGCTCCT-GTGAAT--------------GAATTAATTGAGATCAGGTAGGGAG-GGACGTGGCTCCTGGTGAGTG--------------
i papAnu2.chr2                 C 0 T 45
s calJac3.chr17                   880540 198 -  74750902 AGTGGCCCCACGAGGGAGGATTGATTGAGGTCAGGCGTGGAGAGGGCCTGGCTCCTGGTGAGTGGCCCCACAAGGGAGGATTGATTGAGGTCAGGCGTGGAGAGGGCCTGGCTCCTGGTGAGTGGCCCCACAAGGGAGGATTGATTGAGGTCAGGCGTGGAGAGGGCCTGGCTCCTGGTGAGCGGCCCCACGAGGGAG
i calJac3.chr17                C 0 C 0
e rheMac3.chr2                     10838 231 - 192599291 I
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871  32 +  31377067 I
e chlSab2.chr15                   369042  18 -  91754291 I
e ponAbe2.chr3                 199731814  35 + 202140232 I

a score=40983.000000
s hg38.chr3_KI270935v1_alt         80881 44 +    197351 AGTTAATTGAGATCCATTAGGGAG-GGACCTGGCTCCTGGCGAGT
s panTro4.chr3_GL389630_random     43368 44 +    103936 AGTTAATTGAGATCAGGTATGGAG-GGACCTGGCTCCTGGTAAGT
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120821259 44 + 123690457 AGTTAATTGAGATGAGGTATGGAG-GGACCTGGCTTCTGGTGAGT
i nomLeu3.chr11                C 0 T 175
s macFas5.chr2                     19645 43 + 192460366 AATTAATTGAGATCAGGTAGGGAG-AGACGTGGCTCCT-ATGGGT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     19016 44 - 187378091 AATTAATTGAGATCAGGTAGGGAG-GGACGTGGCTCCTGGTGAGT
i papAnu2.chr2                 T 45 C 0
s calJac3.chr17                   880738 45 -  74750902 GATTGATTGAGATCAGACGTGGAGAGGGCCTGGCTCCTGGTGACT
i calJac3.chr17                C 0 C 0
e rheMac3.chr2                     10838 231 - 192599291 I
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e chlSab2.chr15                   369042 18 -  91754291 I
e ponAbe2.chr3                 199731814 35 + 202140232 I

a score=1500.000000
s hg38.chr3_KI270935v1_alt         80925 1 +    197351 G
s panTro4.chr3_GL389630_random     43412 1 +    103936 G
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120821128 1 + 123690457 G
i nomLeu3.chr11                T 175 C 0
s macFas5.chr2                     19688 1 + 192460366 G
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     19060 1 - 187378091 G
i papAnu2.chr2                 C 0 T 165
s calJac3.chr17                   880783 1 -  74750902 G
i calJac3.chr17                C 0 T 281
e rheMac3.chr2                     10838 231 - 192599291 I
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e chlSab2.chr15                   369042 18 -  91754291 I
e ponAbe2.chr3                 199731814 35 + 202140232 I

a score=1932.000000
s hg38.chr3_KI270935v1_alt         80926 12 +    197351 AGTTAATTGACA
s panTro4.chr3_GL389630_random     43413 12 +    103936 AGTTAACTGATA
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120821129  7 + 123690457 AATTAA-----G
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     19689 12 + 192460366 AATTAATTGAGA
i macFas5.chr2                 C 0 C 0
e rheMac3.chr2                     10838 231 - 192599291 I
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e calJac3.chr17                   880784 281 -  74750902 T
e chlSab2.chr15                   369042 18 -  91754291 I
e papAnu2.chr2                     19061 165 - 187378091 T
e ponAbe2.chr3                 199731814 35 + 202140232 I

a score=20067.000000
s hg38.chr3_KI270935v1_alt         80938 37 +    197351 CCCGGTATGGAGGGACCTGGCTCCTGGCGAGTGATTT
s panTro4.chr3_GL389630_random     43425 37 +    103936 TCCATTATGGAGGGACCTGGCTCCTGGTGAGTGAGTT
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120821136 37 + 123690457 CCAGGTCTGGAGAGGCCTGGCTCCTGGTGAGTGAGTT
i nomLeu3.chr11                C 0 T 44
s macFas5.chr2                     19701 36 + 192460366 TCAGGTGGCGAGGGACGTGGCTCCT-GTGGGTGAATT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     18896 36 - 187378091 CCAGGTATGGAGAGACCTAGGTCCT-GTGAGTGAATT
i papAnu2.chr2                 T 165 C 0
e rheMac3.chr2                     10838 231 - 192599291 I
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e calJac3.chr17                   880784 281 -  74750902 T
e chlSab2.chr15                   369042 18 -  91754291 I
e ponAbe2.chr3                 199731814 35 + 202140232 I

a score=31403.000000
s hg38.chr3_KI270935v1_alt         80975 55 +    197351 AATTGAGACCCGGTGTGGAGGGACTTGGCTCCTGGTGAGTGAGTGAATTGAGATG
s panTro4.chr3_GL389630_random     43462 55 +    103936 AATTGAGATCAGGTATGGAGGGACCTGGCTCCTGGGGAGTGAGTTAACTGAGATC
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120821129 54 + 123690457 AATTAAG-CCAGGTCTGGAGAGGCCTGGCTCCTGGTGAGTGAGTTAATTGAGATG
i nomLeu3.chr11                T 44 C 0
s macFas5.chr2                     19737 54 + 192460366 AATTGAGATCAGGTAGGGAGAGACGTGGCTCCT-ATGGGTGAATTAATTGAGATC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     18932 54 - 187378091 AACTGAGATCAGGTGGGGAGGGGCGTGGCTTCT-GTCCGTGAATTAATTGAGATC
i papAnu2.chr2                 C 0 T 88
e rheMac3.chr2                     10838 231 - 192599291 I
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e calJac3.chr17                   880784 281 -  74750902 T
e chlSab2.chr15                   369042 18 -  91754291 I
e ponAbe2.chr3                 199731814 35 + 202140232 I

a score=71977.000000
s hg38.chr3_KI270935v1_alt         81030 117 +    197351 AGGTATGGAGGGACCTGTCTCCTGGTGAGTGAGTTAATTGAGATGAGGTGTGGAGGGACCTGTCTCCTGGTGAGTGAGTTAATTGAGATGAGGTGTGGAGGGACCCGGCTCCTGGTG
s panTro4.chr3_GL389630_random     43517 117 +    103936 CCTTATGGAGGGACCTGGCTCCTGGTGACTGAGTTAATTGAGATGAGGTGTGGAGGGACCTGGCTCCTGGTGAGTGAGTTAATTGAGACCCGGTATGGAGGGACCTGGATCCTGGTG
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120821183 117 + 123690457 AGGTATGGAGGGACCTGGCTCCTGGTAAGTGAATAAATTGAGATGAGGTATGGAGGGACCTGGCTCCTGGGGAGTGAGTTAATTGAGATGAGGTATGGAGGGACCTGGCTTCTGGTG
i nomLeu3.chr11                C 0 T 177
s macFas5.chr2                     19791 115 + 192460366 AGGTGGGGAGGGATGTGGCTCCTGGTGAGTGAATTAATTGAGATCAGGTAAGGAGAGACGTGGCTCCT-GTGGGTGAATTAATTGAGATCAGGTAGGGAGGGACGTGGCT-CTGGTG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     18898 114 - 187378091 AGGTATGGAGAGACCTAGGTCCT-GTGAGTGAATTAACTGAGATCAGGTGGGGAGGGGCGTGGCTTCT-GTCCGTGAATTAATTGAGATCAGGTAGGGAGGGACGCGGCT-CCTGTG
i papAnu2.chr2                 T 88 C 0
e rheMac3.chr2                     10838 231 - 192599291 I
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871  32 +  31377067 I
e calJac3.chr17                   880784 281 -  74750902 T
e chlSab2.chr15                   369042  18 -  91754291 I
e ponAbe2.chr3                 199731814  35 + 202140232 I

a score=30379.000000
s hg38.chr3_KI270935v1_alt         81147 49 +    197351 AGTGAGTTAATTGAGACTCGGTGTGGAGGGACTTGGCTCCTGGTGAGTG
s panTro4.chr3_GL389630_random     43634 49 +    103936 AGTGAGTTAATTGAGATCAGGTATGGAGGGACCTGGCTCCTGGTGAGTG
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120821123 46 + 123690457 AGTGAG--AATTAAG-CCAGGTCTGGAGAGGCCTGGCTCCTGGTGAGTG
i nomLeu3.chr11                T 177 C 0
s macFas5.chr2                     19906 48 + 192460366 AGTGAATTAATTGAGATCAGGTAGGGAGAGACGTGGCTCCT-GTGGGTG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     19012 49 - 187378091 AATGAATTAATTGAGATCAGGTAGGGAGGGACGTGGCTCCTGGTGAGTG
i papAnu2.chr2                 C 0 T 163
e rheMac3.chr2                     10838 231 - 192599291 I
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e calJac3.chr17                   880784 281 -  74750902 T
e chlSab2.chr15                   369042 18 -  91754291 I
e ponAbe2.chr3                 199731814 35 + 202140232 I

a score=1230.000000
s hg38.chr3_KI270935v1_alt         81196 4 +    197351 AGTG
s panTro4.chr3_GL389630_random     43683 4 +    103936 AGTT
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120821169 4 + 123690457 AGTT
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     19954 4 + 192460366 AATT
i macFas5.chr2                 C 0 C 0
e rheMac3.chr2                     10838 231 - 192599291 I
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e calJac3.chr17                   880784 281 -  74750902 T
e chlSab2.chr15                   369042 18 -  91754291 I
e papAnu2.chr2                     19061 163 - 187378091 T
e ponAbe2.chr3                 199731814 35 + 202140232 I

a score=8020.000000
s hg38.chr3_KI270935v1_alt         81200 10 +    197351 AATTGAGATG
s panTro4.chr3_GL389630_random     43687 10 +    103936 AATTGAGATC
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120821173 10 + 123690457 AATTGAGATG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr2                     11069 10 - 192599291 AATTGAGATC
i rheMac3.chr2                 I 231 C 0
s macFas5.chr2                     19958 10 + 192460366 AATTGAGATC
i macFas5.chr2                 C 0 C 0
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e calJac3.chr17                   880784 281 -  74750902 T
e chlSab2.chr15                   369042 18 -  91754291 I
e papAnu2.chr2                     19061 163 - 187378091 T
e ponAbe2.chr3                 199731814 35 + 202140232 I

a score=43838.000000
s hg38.chr3_KI270935v1_alt         81210 45 +    197351 AGGTATGGAGGGACCTGGCTCCTGGTGAGTGAGTGAATTGAGATG
s panTro4.chr3_GL389630_random     43697 45 +    103936 AGGTATGGAGGGACCTGGCTCCTGGTAAGTGAGTTAACTGATATC
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120821183 45 + 123690457 AGGTATGGAGGGACCTGGCTCCTGGTAAGTGAATAAATTGAGATG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr2                     11079 44 - 192599291 AGGTGGGGAGAGACGTGGCTCCT-GTGGGTGAATTAATTGAGATC
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     19968 45 + 192460366 AGGTAGGGAGGGACGTGGCTCCTGGTGAGTTAATTAATTGAGATC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     18898 44 - 187378091 AGGTATGGAGAGACCTAGGTCCT-GTGAGTGAATTAACTGAGATC
i papAnu2.chr2                 T 163 C 0
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e calJac3.chr17                   880784 281 -  74750902 T
e chlSab2.chr15                   369042 18 -  91754291 I
e ponAbe2.chr3                 199731814 35 + 202140232 I

a score=91264.000000
s hg38.chr3_KI270935v1_alt         81255 75 +    197351 AGGTGTGGAGGGACCTGTCTCCTGGTGAGTGAGTTAATTGAGATGAGGTATGGAGGGACCTGTCTCCTGGTGAGT
s panTro4.chr3_GL389630_random     43742 75 +    103936 CATTATGGAGGGACCTGGCTCCTGGTGAGTGAGTGAATTGAGATCAGGTATAGAGGGACCTGGCTCCTGGTGAGT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199731849 75 + 202140232 aggtctggaggggcctggctcctggtgagtgAGTTAGTTGAGATGAGGTATGGAGGGACCTGGCTCCTGGTGAGT
i ponAbe2.chr3                 I 35 C 0
s nomLeu3.chr11                120821228 75 + 123690457 AGGTATGGAGGGACCTGGCTCCTGGGGAGTGAGTTAATTGAGATGAGGTATGGAGGGACCTGGCTTCTGGTGAGT
i nomLeu3.chr11                C 0 T 200
s rheMac3.chr2                     11123 69 - 192599291 AGGTGGCGAGGGACGTGGCTCCT-----GTGAATTAATTGAGATCAGGTGGGGAGAGACGTGGCTCCT-GTGGGT
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     20013 69 + 192460366 AGGTAGGGAGGGACGTGGGTCCT-----GTGAATTAATTGAGATCAGGTTGGGAGGGACGTGGGTCCT-GTGGGT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     18942 73 - 187378091 AGGTGGGGAGGGGCGTGGCTTCT-GTCCGTGAATTAATTGAGATCAGGTAGGGAGGGACGCGGCTCCT-GTGAAT
i papAnu2.chr2                 C 0 C 0
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e calJac3.chr17                   880784 281 -  74750902 T
e chlSab2.chr15                   369042 18 -  91754291 I

a score=53422.000000
s hg38.chr3_KI270935v1_alt         81330 46 +    197351 GAGTTAATTGAGATCAGGTATGGAGGGACTTGGCTCCTGGTGAGTG
s panTro4.chr3_GL389630_random     43817 46 +    103936 GAGTTAATTGAGATCAGGTATGGAGGGACCTGGCTCCTGGTAAGTG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199731924 46 + 202140232 GAGTTAATTGAGATCCGGTATGGAGGGACCTGGCTCCTGGTGAGTG
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                     11192 46 - 192599291 GAATTAATTGAGATCAGGTGGGGAGGGACGTGGCTCCTGGTGAGTG
i rheMac3.chr2                 C 0 I 174
s macFas5.chr2                     20082 45 + 192460366 GAATTAATTGAGATCAGGTAGGGAGAGACGTGGGTCCT-GTGGGTG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     19015 46 - 187378091 GAATTAATTGAGATCAGGTAGGGAGGGACGTGGCTCCTGGTGAGTG
i papAnu2.chr2                 C 0 T 161
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e calJac3.chr17                   880784 281 -  74750902 T
e chlSab2.chr15                   369042 18 -  91754291 I
e nomLeu3.chr11                120821303 200 + 123690457 T

a score=4982.000000
s hg38.chr3_KI270935v1_alt         81376 16 +    197351 AGTTAATTGAGACTCT
s panTro4.chr3_GL389630_random     43863 16 +    103936 AGTTAACTGATATCCA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199731970 16 + 202140232 AATTAATTGAGATCAG
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr2                     20127 16 + 192460366 AATTAATTGAGATCAG
i macFas5.chr2                 C 0 C 0
e rheMac3.chr2                     11238 174 - 192599291 I
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e calJac3.chr17                   880784 281 -  74750902 T
e chlSab2.chr15                   369042 18 -  91754291 I
e papAnu2.chr2                     19061 161 - 187378091 T
e nomLeu3.chr11                120821303 200 + 123690457 T

a score=15312.000000
s hg38.chr3_KI270935v1_alt         81392 25 +    197351 GTGTGGAGGGACCTGGCTCCTGGTG
s panTro4.chr3_GL389630_random     43879 25 +    103936 TTATGGAGGGACCTGTCTCCTGGTG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199731986 25 + 202140232 ATGTGGAGGGACCTAGCTCCTGGTG
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr2                     20143 25 + 192460366 GTGGGGAGGGACGTGGCTCCTGGTG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     18900 24 - 187378091 GTATGGAGAGACCTAGGTCCT-GTG
i papAnu2.chr2                 T 161 C 0
e rheMac3.chr2                     11238 174 - 192599291 I
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e calJac3.chr17                   880784 281 -  74750902 T
e chlSab2.chr15                   369042 18 -  91754291 I
e nomLeu3.chr11                120821303 200 + 123690457 T

a score=20694.000000
s hg38.chr3_KI270935v1_alt         81417 18 +    197351 AGTGAGTTAATTGAGATG
s panTro4.chr3_GL389630_random     43904 18 +    103936 AGTGAGTTAATTGAGATC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199732011 18 + 202140232 AGTGAGATAATTGAGATG
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                     11412 18 - 192599291 AGTGAATTAATTGAGATC
i rheMac3.chr2                 I 174 C 0
s macFas5.chr2                     20168 18 + 192460366 AGTGAATTAATTGAGATC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     18924 18 - 187378091 AGTGAATTAACTGAGATC
i papAnu2.chr2                 C 0 T 44
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e calJac3.chr17                   880784 281 -  74750902 T
e chlSab2.chr15                   369042 18 -  91754291 I
e nomLeu3.chr11                120821303 200 + 123690457 T

a score=30375.000000
s hg38.chr3_KI270935v1_alt         81435 30 +    197351 AGGTATGGAGGGACCTGGCTCCTGGTGAGT
s panTro4.chr3_GL389630_random     43922 30 +    103936 CGGTATGGAGGGACCTGGATCCTGGTGAGT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199732029 30 + 202140232 AGGTATGGAGGGACCTGGCTCCTGGTGAGT
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                     11430 30 - 192599291 AGGTAGGGAGGGACGTGGCTCCTGGTGAGT
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     20186 29 + 192460366 AGGTAGGGAGAGACGTGGCTCCT-GTGGGT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     18898 29 - 187378091 AGGTATGGAGAGACCTAGGTCCT-GTGAGT
i papAnu2.chr2                 T 44 C 0
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e calJac3.chr17                   880784 281 -  74750902 T
e chlSab2.chr15                   369042 18 -  91754291 I
e nomLeu3.chr11                120821303 200 + 123690457 T

a score=20061.000000
s hg38.chr3_KI270935v1_alt         81465 13 +    197351 GAGTTAATTGAGA
s panTro4.chr3_GL389630_random     43952 13 +    103936 GAGTTAATTGAGA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199732059 13 + 202140232 GAGTTAATTGAGA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120821103 12 + 123690457 gaattaattga-a
i nomLeu3.chr11                T 200 C 0
s rheMac3.chr2                     11460 13 - 192599291 GAATTAATTGAGA
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     20215 13 + 192460366 GAATTAATTGAGA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     18927 13 - 187378091 GAATTAACTGAGA
i papAnu2.chr2                 C 0 T 44
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e calJac3.chr17                   880784 281 -  74750902 T
e chlSab2.chr15                   369042 18 -  91754291 I

a score=17487.000000
s hg38.chr3_KI270935v1_alt         81478 28 +    197351 TCAGGTATGGAGGGACCTGGCTCCTGGT
s panTro4.chr3_GL389630_random     43965 28 +    103936 TCAGGTATGGAGGGACCTGGCTCCTGGT
i panTro4.chr3_GL389630_random C 0 T 450
s ponAbe2.chr3                 199732072 28 + 202140232 TCCAGTATGAAGGGACCTGGCTCCTGGT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120821115  8 + 123690457 ttaaGTAT--------------------
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr2                     11473 25 - 192599291 TCAGGTAGGGAGGGACGTGGGTCCT---
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     20228 27 + 192460366 TCAGGTAGGGAGGGACGTGGCTCTGGT-
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     18896 27 - 187378091 CCAGGTATGGAGAGACCTAGGTCCTGT-
i papAnu2.chr2                 T 44 C 0
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e calJac3.chr17                   880784 281 -  74750902 T
e chlSab2.chr15                   369042 18 -  91754291 I

a score=184596.000000
s hg38.chr3_KI270935v1_alt         81506 140 +    197351 GAGTGAGTTAATTGAGATGAGGTGTGGAGGGACCTGGCTCCTGGTGAGTGAGTTAATTGAGATGAGGTATGGAGGGACCTGGCTCCTGGTGAGTGAGTTAATTGAGATCAGGTATGGAGGGACCTGGCTCCTG---------------------------------------GTGAGTG
s panTro4.chr3_GL389630_random     43543 140 +    103936 GACTGAGTTAATTGAGATGAGGTGTGGAGGGACCTGGCTCCTGGTGAGTGAGTTAATTGAGACCCGGTATGGAGGGACCTGGATCCTGGTGAGTGAGTTAATTGAGATCAGGTATGGAGGGACCTGGCTCCTG---------------------------------------GTGAGTG
i panTro4.chr3_GL389630_random T 450 C 0
s ponAbe2.chr3                 199732100 140 + 202140232 GAGTGAATTAATTGAGATCAGATATGGAGGGACCTGGCTCCTGGTGAGTGAGTTAATTGAGATGAGGTATGGAGGGACCTGGCTCCTGGTGAGTGAGTTAACTGAGATAAGTTATGGAGCGACCTGGCTCCTG---------------------------------------GTGAGTG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120821123 136 + 123690457 -AGTGAG--AATTAAG-CCAGGTCTGGAGAGGCCTGGCTCCTGGTGAGTGAGTTAATTGAGATGAGGTATGGAGGGACCTGGCTCCTGGTAAGTGAATAAATTGAGATGAGGTATGGAGGGACCTGGCTCCTG---------------------------------------GGGAGTG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr2                     11498 136 - 192599291 --GTGAATTAATTGAGATCAGGTTGGGAGGGAAGTGGGTCCT-GTGGGTGAATTAATTGAGATCAGGTAGGGAGGGACGTGGCTCCT-GTCAGTGAATTAATTGAGATCAGGTGGGGAGGGACGTGGCTCCTG---------------------------------------GTGAGTG
i rheMac3.chr2                 C 0 T 133
s macFas5.chr2                     20255 173 + 192460366 GAGTGAATTAATTGAGATCAGGTAGGGAGGGACGTGGCTCCT-GTCAGTGAATTAATTGAGATCAGGTAGGGAGGGACGTGGGTCCT-----GTGAATTAATTGAGATCAGGTAGGGAGGGACGTGGGTCCTGTGAATTAATTGAGATCAGGTTGGGAGGGACGTGGGTCCTGTGGGTG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     18923 138 - 187378091 GAGTGAATTAACTGAGATCAGGTGGGGAGGGGCGTGGCTTCT-GTCCGTGAATTAATTGAGATCAGGTAGGGAGGGACGCGGCTCCT-GTGAATGAATTAATTGAGATCAGGTAGGGAGGGACGTGGCTCCTG---------------------------------------GTGAGTG
i papAnu2.chr2                 C 0 T 89
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871  32 +  31377067 I
e calJac3.chr17                   880784 281 -  74750902 T
e chlSab2.chr15                   369042  18 -  91754291 I

a score=8118.000000
s hg38.chr3_KI270935v1_alt         81646 5 +    197351 AGTTA
s panTro4.chr3_GL389630_random     43683 5 +    103936 AGTTA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199732240 5 + 202140232 AATTA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120821259 5 + 123690457 AGTTA
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr2                     11501 5 - 192599291 AATTA
i rheMac3.chr2                 T 133 C 0
s macFas5.chr2                     20428 5 + 192460366 AATTA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     18972 5 - 187378091 AATTA
i papAnu2.chr2                 T 89 C 0
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e calJac3.chr17                   880784 281 -  74750902 T
e chlSab2.chr15                   369042 18 -  91754291 I

a score=71777.000000
s hg38.chr3_KI270935v1_alt         81651 39 +    197351 ATTGAGATGAGGTATGGAGGGACCTGGCTCCTGGTGAGT
s panTro4.chr3_GL389630_random     43688 39 +    103936 ATTGAGATCAGGTATGGAGGGACCTGGCTCCTGGTAAGT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199732245 39 + 202140232 ACTGAGATGAGGTATGGAGGGACCTGGCTCCTGGTGAGT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120821264 39 + 123690457 ATTGAGATGAGGTATGGAGGGACCTGGCTTCTGGTGAGT
i nomLeu3.chr11                C 0 T 45
s rheMac3.chr2                     11506 38 - 192599291 ATTGAGATCAGGTTGGGAGGGAAGTGGGTCCT-GTGGGT
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     20433 38 + 192460366 ATTGAGATCAGGTAGGGAGGGACGTGGCTCCT-GTCAGT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     18977 38 - 187378091 ATTGAGATCAGGTAGGGAGGGACGCGGCTCCT-GTGAAT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   369060 38 -  91754291 ATTGAGATCAGGTAGGGAGGGGCGTGGCTCCG-GTGAGT
i chlSab2.chr15                I 18 C 0
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e calJac3.chr17                   880784 281 -  74750902 T

a score=11191.000000
s hg38.chr3_KI270935v1_alt         81690 6 +    197351 GAGTGA
s panTro4.chr3_GL389630_random     43727 6 +    103936 GAGTTA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199732284 6 + 202140232 GAGTTA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120821258 6 + 123690457 GAGTTA
i nomLeu3.chr11                T 45 C 0
s rheMac3.chr2                     11544 6 - 192599291 GAATTA
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     20471 6 + 192460366 GAATTA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     19015 6 - 187378091 GAATTA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   369098 6 -  91754291 GAATGA
i chlSab2.chr15                C 0 C 0
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e calJac3.chr17                   880784 281 -  74750902 T

a score=26301.000000
s hg38.chr3_KI270935v1_alt         81696 11 +    197351 ATTGAGATCAG
s panTro4.chr3_GL389630_random     43733 11 +    103936 ACTGATATCCA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199732290 11 + 202140232 ATTGAGATGAG
i ponAbe2.chr3                 C 0 T 107
s nomLeu3.chr11                120821264 11 + 123690457 ATTGAGATGAG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr2                     11550 11 - 192599291 ATTGAGATCAG
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     20477 11 + 192460366 ATTGAGATCAG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     19021 11 - 187378091 ATTGAGATCAG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   369104 11 -  91754291 ATTGAGATCGG
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   880503 11 -  74750902 attgagctcag
i calJac3.chr17                T 281 C 0
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I

a score=48225.000000
s hg38.chr3_KI270935v1_alt         81707 28 +    197351 GTATGGAG-GGACTTGGCTCCTGGTGAGT
s panTro4.chr3_GL389630_random     43744 28 +    103936 TTATGGAG-GGACCTGGCTCCTGGTGAGT
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120821275 28 + 123690457 GTATGGAG-GGACCTGGCTTCTGGTGAGT
i nomLeu3.chr11                C 0 T 45
s rheMac3.chr2                     11561 27 - 192599291 GTAGGGAG-GGACGTGGCTCCT-GTCAGT
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     20488 28 + 192460366 GTAGGGAG-GGACGTGGCTCCTGGTGAGT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     19032 28 - 187378091 GTAGGGAG-GGACGTGGCTCCTGGTGAGT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   369115 27 -  91754291 GTAGGGAG-GGGCGTGACTCCG-GTGAGT
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   880514 29 -  74750902 gcatagagagggcctggcTCCTGGTTAGT
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e ponAbe2.chr3                 199732301 107 + 202140232 T

a score=3600.000000
s hg38.chr3_KI270935v1_alt         81735 1 +    197351 G
s panTro4.chr3_GL389630_random     43772 1 +    103936 G
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199732194 1 + 202140232 G
i ponAbe2.chr3                 T 107 C 0
s nomLeu3.chr11                120821258 1 + 123690457 G
i nomLeu3.chr11                T 45 C 0
s rheMac3.chr2                     11588 1 - 192599291 G
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     20516 1 + 192460366 G
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     19060 1 - 187378091 G
i papAnu2.chr2                 C 0 T 161
s chlSab2.chr15                   369142 1 -  91754291 G
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   880543 1 -  74750902 G
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I

a score=19127.000000
s hg38.chr3_KI270935v1_alt         81736 12 +    197351 AGTTAATTGAGA
s panTro4.chr3_GL389630_random     43773 12 +    103936 AGTGAATTGAGA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199732195 12 + 202140232 AGTTAACTGAGA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120821259 12 + 123690457 AGTTAATTGAGA
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr2                     11589 12 - 192599291 AATTAATTGAGA
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     20517 12 + 192460366 AATTAATTGAGA
i macFas5.chr2                 C 0 C 0
s chlSab2.chr15                   369143 12 -  91754291 AATGAATTGAGA
i chlSab2.chr15                C 0 I 972
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e calJac3.chr17                   880544  0 -  74750902 C
e papAnu2.chr2                     19061 161 - 187378091 T

a score=747.000000
s hg38.chr3_KI270935v1_alt         81748 4 +    197351 CTCT
s panTro4.chr3_GL389630_random     43785 4 +    103936 TCAG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199732207 4 + 202140232 TAAG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120821271 4 + 123690457 TGAG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr2                     11601 4 - 192599291 TCAG
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     20529 4 + 192460366 TCAG
i macFas5.chr2                 C 0 C 0
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e calJac3.chr17                   880544 0 -  74750902 C
e chlSab2.chr15                   369155 972 -  91754291 I
e papAnu2.chr2                     19061 161 - 187378091 T

a score=31756.000000
s hg38.chr3_KI270935v1_alt         81752 28 +    197351 GTGTGGAGGGACCTGGCTCCTGGTGAGT
s panTro4.chr3_GL389630_random     43789 28 +    103936 GTATAGAGGGACCTGGCTCCTGGTGAGT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199732211 28 + 202140232 TTATGGAGCGACCTGGCTCCTGGTGAGT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120821275 28 + 123690457 GTATGGAGGGACCTGGCTTCTGGTGAGT
i nomLeu3.chr11                C 0 T 45
s rheMac3.chr2                     11605 28 - 192599291 GTGGGGAGGGACGTGGCTCCTGGTGAGT
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     20533 23 + 192460366 GTAGGGAGAGACGTGGCTCCT-----GT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     18900 27 - 187378091 GTATGGAGAGACCTAGGTCCT-GTGAGT
i papAnu2.chr2                 T 161 C 0
s calJac3.chr17                   880544 13 -  74750902 ---------------GCCCCACGAGGGA
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e chlSab2.chr15                   369155 972 -  91754291 I

a score=2800.000000
s hg38.chr3_KI270935v1_alt         81780 1 +    197351 G
s panTro4.chr3_GL389630_random     43817 1 +    103936 G
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199732239 1 + 202140232 G
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120821258 1 + 123690457 G
i nomLeu3.chr11                T 45 C 0
s rheMac3.chr2                     11633 1 - 192599291 G
i rheMac3.chr2                 C 0 T 549
s macFas5.chr2                     20556 1 + 192460366 G
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     18927 1 - 187378091 G
i papAnu2.chr2                 C 0 C 0
s calJac3.chr17                   880557 1 -  74750902 G
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e chlSab2.chr15                   369155 972 -  91754291 I

a score=18466.000000
s hg38.chr3_KI270935v1_alt         81781 12 +    197351 AGTTAATTGAGA
s panTro4.chr3_GL389630_random     43818 12 +    103936 AGTTAATTGAGA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199732240 12 + 202140232 AATTAACTGAGA
i ponAbe2.chr3                 C 0 I 180
s nomLeu3.chr11                120821259 12 + 123690457 AGTTAATTGAGA
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     20557 12 + 192460366 AATTAATTGAGA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     18928 12 - 187378091 AATTAACTGAGA
i papAnu2.chr2                 C 0 C 0
s calJac3.chr17                   880558 12 -  74750902 GATTGATTGAGG
i calJac3.chr17                C 0 C 0
e rheMac3.chr2                     11634 549 - 192599291 T
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e chlSab2.chr15                   369155 972 -  91754291 I

a score=34110.000000
s hg38.chr3_KI270935v1_alt         81793 26 +    197351 TGAGGTATGGAG-GGACCTGGCTGCTG
s panTro4.chr3_GL389630_random     43830 26 +    103936 TCAGGTATGGAG-GGACCTGGCTCCTG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199732432 26 + 202140232 TGAGGTGTGGAG-GGACCTGGCTCCTG
i ponAbe2.chr3                 I 180 C 0
s nomLeu3.chr11                120821271 26 + 123690457 TGAGGTATGGAG-GGACCTGGCTTCTG
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     20569 25 + 192460366 TCAGGTAGGGAG-GGACGTGGC-TCTG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     18940 26 - 187378091 TCAGGTGGGGAG-GGGCGTGGCTTCTG
i papAnu2.chr2                 C 0 T 68
s calJac3.chr17                   880570 27 -  74750902 TCAGGCGTGGAGAGGGCCTGGCTCCTG
i calJac3.chr17                C 0 C 0
e rheMac3.chr2                     11634 549 - 192599291 T
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e chlSab2.chr15                   369155 972 -  91754291 I

a score=6575.000000
s hg38.chr3_KI270935v1_alt         81819 5 +    197351 GTGAG
s panTro4.chr3_GL389630_random     43856 5 +    103936 GTAAG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199732458 5 + 202140232 GTGAG
i ponAbe2.chr3                 C 0 T 211
s nomLeu3.chr11                120821297 5 + 123690457 GTGAG
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     20594 5 + 192460366 GTGAG
i macFas5.chr2                 C 0 C 0
s calJac3.chr17                   880597 5 -  74750902 GTGAG
i calJac3.chr17                C 0 C 0
e rheMac3.chr2                     11634 549 - 192599291 T
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e chlSab2.chr15                   369155 972 -  91754291 I
e papAnu2.chr2                     18966 68 - 187378091 T

a score=1365.000000
s hg38.chr3_KI270935v1_alt         81824 1 +    197351 T
s panTro4.chr3_GL389630_random     43861 1 +    103936 T
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199732252 1 + 202140232 T
i ponAbe2.chr3                 T 211 C 0
s nomLeu3.chr11                120821302 1 + 123690457 T
i nomLeu3.chr11                C 0 T 152
s macFas5.chr2                     20599 1 + 192460366 T
i macFas5.chr2                 C 0 C 0
s calJac3.chr17                   880602 1 -  74750902 T
i calJac3.chr17                C 0 C 0
e rheMac3.chr2                     11634 549 - 192599291 T
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e chlSab2.chr15                   369155 972 -  91754291 I
e papAnu2.chr2                     18966 68 - 187378091 T

a score=1000.000000
s hg38.chr3_KI270935v1_alt         81825 1 +    197351 G
s panTro4.chr3_GL389630_random     43862 1 +    103936 G
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199732253 1 + 202140232 G
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr2                     20600 1 + 192460366 G
i macFas5.chr2                 C 0 I 14
s calJac3.chr17                   880603 1 -  74750902 G
i calJac3.chr17                C 0 C 0
e rheMac3.chr2                     11634 549 - 192599291 T
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e chlSab2.chr15                   369155 972 -  91754291 I
e papAnu2.chr2                     18966 68 - 187378091 T
e nomLeu3.chr11                120821303 152 + 123690457 T

a score=1910.000000
s hg38.chr3_KI270935v1_alt         81826 2 +    197351 AG
s panTro4.chr3_GL389630_random     43863 2 +    103936 AG
i panTro4.chr3_GL389630_random C 0 I 14
s ponAbe2.chr3                 199732254 2 + 202140232 AG
i ponAbe2.chr3                 C 0 I 45
s macFas5.chr2                     20615 2 + 192460366 AG
i macFas5.chr2                 I 14 C 0
s papAnu2.chr2                     18898 2 - 187378091 AG
i papAnu2.chr2                 T 68 C 0
e rheMac3.chr2                     11634 549 - 192599291 T
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e calJac3.chr17                   880604 0 -  74750902 C
e chlSab2.chr15                   369155 972 -  91754291 I
e nomLeu3.chr11                120821303 152 + 123690457 T

a score=1566.000000
s hg38.chr3_KI270935v1_alt         81828 4 +    197351 GTAT
s panTro4.chr3_GL389630_random     43879 4 +    103936 TTAT
i panTro4.chr3_GL389630_random I 14 C 0
s ponAbe2.chr3                 199732301 4 + 202140232 GTGT
i ponAbe2.chr3                 I 45 C 0
s macFas5.chr2                     20617 4 + 192460366 GTAG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     18900 4 - 187378091 GTAT
i papAnu2.chr2                 C 0 C 0
e rheMac3.chr2                     11634 549 - 192599291 T
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e calJac3.chr17                   880604 0 -  74750902 C
e chlSab2.chr15                   369155 972 -  91754291 I
e nomLeu3.chr11                120821303 152 + 123690457 T

a score=9173.000000
s hg38.chr3_KI270935v1_alt         81832 7 +    197351 GGAGGGA
s panTro4.chr3_GL389630_random     43883 7 +    103936 GGAGGGA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199732305 7 + 202140232 GGAGGGA
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                     11085 7 - 192599291 GGAGAGA
i rheMac3.chr2                 T 549 C 0
s macFas5.chr2                     20621 7 + 192460366 GGAGGGA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     18904 7 - 187378091 GGAGAGA
i papAnu2.chr2                 C 0 C 0
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e calJac3.chr17                   880604 0 -  74750902 C
e chlSab2.chr15                   369155 972 -  91754291 I
e nomLeu3.chr11                120821303 152 + 123690457 T

a score=143947.000000
s hg38.chr3_KI270935v1_alt         81839 103 +    197351 CCTGGCTCCTGGTGAGTGAGTTAATTGAGGTCAGGTATGGAG-GGACCTGGCTCCTGGTGAGT--------------GAGTTAATTGAGATCAG----------------------------------------------TTATGGAG-GGACCTGGCTCCTGGT
s panTro4.chr3_GL389630_random     43890 103 +    103936 CCTGTCTCCTGGTGAGTGAGTTAATTGAGATCCGGTATGGAG-GGACCTGGATCCTGGTGAGT--------------GAGTTAATTGAGATCAG----------------------------------------------GTATGGAG-GGACCTGGCTCCTGGT
i panTro4.chr3_GL389630_random C 0 T 180
s ponAbe2.chr3                 199732312 103 + 202140232 CCTGGCTCCTGGTGAGTGAGTTAATTGAGATGAGTTATGGAG-GGACCTGGCTCCTGGTGAGT--------------GAGTTAATTGAGATGAG----------------------------------------------GTATGGAG-GGACCTGGCTCCTGGT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120821151 103 + 123690457 CCTGGCTCCTGGTGAGTGAGTTAATTGAGATGAGGTATGGAG-GGACCTGGCTCCTGGTAAGT--------------GAATAAATTGAGATGAG----------------------------------------------GTATGGAG-GGACCTGGCTCCTGGG
i nomLeu3.chr11                T 152 C 0
s rheMac3.chr2                     11092  96 - 192599291 CGTGGCTCCT-GTGGGTGAATTAATTGAGATCAGGTGGCGAG-GGACGTGGCTCCT-----GT--------------GAATTAATTGAGATCAG----------------------------------------------GTGGGGAG-AGACGTGGCTCCTGT-
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     20628 142 + 192460366 CGTGGCTCTG-GTGAGTGAATTAATTGAGATCAGGTAGGGAG-GGACGTGGGTCCT-----GT--------------GAATTAATTGAGATCAGGTTGGGAGGGACGTGGGTCCTGTGGGTGAATTAATTGAGATCAGGTGTAGGGAG-GGACGTGGCTCCTGT-
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     18911 100 - 187378091 CCTAGGTCCT-GTGAGTGAATTAACTGAGATCAGGTGGGGAG-GGGCGTGGCTTCT-GTCCGT--------------GAATTAATTGAGATCAG----------------------------------------------GTAGGGAG-GGACGCGGCTCCTGT-
i papAnu2.chr2                 C 0 C 0
s calJac3.chr17                   880604 115 -  74750902 ----GCCCCACAAGGGAGGATTGATTGAGGTCAGGCGTGGAGAGGGCCTGGCTCCTGGTGAGTGGCCCCACAAGGGAGGATTGATTGAGGTCAG----------------------------------------------GCGTGGAGAGGGCCTGGCTCCTGGT
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871  32 +  31377067 I
e chlSab2.chr15                   369155 972 -  91754291 I

a score=94739.000000
s hg38.chr3_KI270935v1_alt         81942 49 +    197351 --------------GAGTGAGTTAATTGAGATGAGGTATGGAG-GGACCTGGCTCCTGGTGAGT---
s panTro4.chr3_GL389630_random     43813 49 +    103936 --------------GAGTGAGTTAATTGAGATCAGGTATGGAG-GGACCTGGCTCCTGGTAAGT---
i panTro4.chr3_GL389630_random T 180 I 1196
s ponAbe2.chr3                 199732415 49 + 202140232 --------------GAGTGAGTTAATTGAGATGAGGTGTGGAG-GGACCTGGCTCCTGGTGAGT---
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120821254 49 + 123690457 --------------GAGTGAGTTAATTGAGATGAGGTATGGAG-GGACCTGGCTTCTGGTGAGT---
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr2                     11188 49 - 192599291 --------------GGGTGAATTAATTGAGATCAGGTGGGGAG-GGACGTGGCTCCTGGTGAGT---
i rheMac3.chr2                 C 0 I 400
s macFas5.chr2                     20770 49 + 192460366 --------------CAGTGAATTAATTGAGATCAGGTGGGGAG-GGACGTGGCTCCTGGTGAGT---
i macFas5.chr2                 C 0 I 4
s papAnu2.chr2                     19011 49 - 187378091 --------------GAATGAATTAATTGAGATCAGGTAGGGAG-GGACGTGGCTCCTGGTGAGT---
i papAnu2.chr2                 C 0 I 4
s calJac3.chr17                   880719 67 -  74750902 GAGCGGCCCCACGAGGGAGGATTGATTGAGATCAGACGTGGAGAGGGCCTGGCTCCTGGTGACTGTT
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e chlSab2.chr15                   369155 972 -  91754291 I

a score=600.000000
s hg38.chr3_KI270935v1_alt         81991 1 +    197351 C
s ponAbe2.chr3                 199732464 1 + 202140232 C
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120821303 1 + 123690457 C
i nomLeu3.chr11                C 0 C 0
s calJac3.chr17                   880786 1 -  74750902 C
i calJac3.chr17                C 0 C 0
e rheMac3.chr2                     11237 400 - 192599291 I
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e chlSab2.chr15                   369155 972 -  91754291 I
e macFas5.chr2                     20819 4 + 192460366 I
e papAnu2.chr2                     19060 4 - 187378091 I
e panTro4.chr3_GL389630_random     43862 1196 +    103936 I

a score=3929.000000
s hg38.chr3_KI270935v1_alt         81992 5 +    197351 TCCTG
s ponAbe2.chr3                 199732465 5 + 202140232 GCCAG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120821304 5 + 123690457 ACCAC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr2                     11637 5 - 192599291 GCCAC
i rheMac3.chr2                 I 400 C 0
s macFas5.chr2                     20823 5 + 192460366 GCCAC
i macFas5.chr2                 I 4 C 0
s papAnu2.chr2                     19064 5 - 187378091 GCCAC
i papAnu2.chr2                 I 4 C 0
s calJac3.chr17                   880787 5 -  74750902 CCCAC
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65401596 1124 -  98207768 I
e canFam3.chr33                 29037871 32 +  31377067 I
e chlSab2.chr15                   369155 972 -  91754291 I
e panTro4.chr3_GL389630_random     43862 1196 +    103936 I

a score=158454.000000
s hg38.chr3_KI270935v1_alt         81997 61 +    197351 GAGGCAGCTGCTATCTGGGAACACAGGCACAGGTGGGA-----ACAGACCTTCACTTCCTGCTCAC
s ponAbe2.chr3                 199732470 61 + 202140232 GAGGCAGCTGCTATCTGGGAACACAGGTACAGGTGGGA-----ACAGACCTTCACTTCCTGCTCAC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120821309 61 + 123690457 GAGGCAGCTGCTATCTGGGAACACAGGCACAGGTGGGA-----ATAGACCTTCACTTCCTGCTCAC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr2                     11642 61 - 192599291 GAGGCAGCTGCTAGCTGGGAACACAGGCACAGGTGGGA-----ACAGACCTTCACTTCCTGCTCAC
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     20828 61 + 192460366 GAGGCAGCTGCTAGCTGGGAACACAGGCACAGGTGGGA-----ACAGACCTTCACTTCCTGCTCAC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     19069 61 - 187378091 GAGGCAGCTGCTAGTTGGGAACACAGGCACAGGTGGGA-----ACAGACCTTCACTTCCCGCTCAC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   370127 61 -  91754291 GAGGCAGCTGCTAGTTGGGAACACAGGCACAGGTGGGA-----ACAGACCTTCACTTCCTGCTCAC
i chlSab2.chr15                I 972 C 0
s calJac3.chr17                   880792 60 -  74750902 GAGGCAGCTGTGATTTGGAAACACA-GCACAGGTGGGA-----AGAGAACTTCGCTTCCTGCTCAC
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29037903 66 +  31377067 GACATAGCTGTCATTTGGGGACATGAAAATAAGCTGGAAAGATACAGCCTTTTCTTTTCTGCCCGC
i canFam3.chr33                I 32 C 0
e mm10.chr16                    65401596 1124 -  98207768 I
e panTro4.chr3_GL389630_random     43862 1196 +    103936 I

a score=185102.000000
s hg38.chr3_KI270935v1_alt         82058 61 +    197351 TTAGGTTCAGTGAGTTCTCCAAACCAGCCTCCCAGGAATGCCATTCAACATGGCTGTGAGG
s ponAbe2.chr3                 199732531 61 + 202140232 TTAGGTTCAGCGACTTCTCCAAACCAGCCTCCCAGGAATGCTGTTCTCTATGGCCGTGAGG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120821370 61 + 123690457 TTAGGTTCAGCGACTTCTCCAAACCAGCCTGCCCGGAATGCCGTTCTCCATGGTCGAAAGG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr2                     11703 61 - 192599291 TTAGGTTCAGCGGCTTCTCCAAACCAGCCTCCCAGGAATGCCGTTCTCCATGGCCGTGAGG
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     20889 61 + 192460366 TTAGGTTCAGCGGCTTCTCCAAACCAGCCTCCCAGGAATGCCGTTCTCCATGGCCGTGAGG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     19130 60 - 187378091 TTAGGTTCAGCGGCTTCTCCAAACCAGCCTCCCAGGAATTCCCTTCTCCATGGCCGTGA-G
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   370188 61 -  91754291 TTAGGTTCAGCGGCTTCTCCAAACCAGCCTCCCAGGAATGCTGTTCTCCATGGCCGTGAGG
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   880852 61 -  74750902 TTAGGTTCAGCGGCTTCTCCAAACCGGCCTCCCAGGAATGCCGTTCTCCATGGCCATAGAG
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65402720 58 -  98207768 TCAGGTTCTGCAGCTCCTCCA---CAGCCTCTCCAGAAGGCCACTCTCGGTGACTATGAAG
i mm10.chr16                   I 1124 C 0
s canFam3.chr33                 29037969 61 +  31377067 TTAGGTCCACCAGCTTCTCCAAGCCAGCCTCCCAGGGCTGCCCCTCTCCATCTCCATGAAG
i canFam3.chr33                C 0 C 0
e panTro4.chr3_GL389630_random     43862 1196 +    103936 I

a score=469548.000000
s hg38.chr3_KI270935v1_alt         82119 218 +    197351 AGAATAAAGAAGAGAGCCTGACTCCTCTCCTGAGGCCCCTTCCCCACCCTGAGCCAGCAGGATCCACGGAGCAGAGGTCATCTGTCCCCAGCTTGGCCCACTGAGGCCAGCATGGCTGG----GCCCAGGAT-GCTTGTCTCTCAGCTCCCATCCTGTGTACTTCCACATTGGTTTAAccagaggaaaaccgaaatctacaattgtcataaacacatttaaat
s ponAbe2.chr3                 199732592 218 + 202140232 GGAATCAAGAAGAGAGCCTGACTCCTCTCCTGAGGTCCCTTCCACACCCTGAGCCAGCAGGATCCACGGAGCAGAGGTCATCTGCCCGCAACTTGGCCCACTGAGGCCAGCATGGCTGG----GCCCAGGAT-GCTTGTCTCTCAGCTCCCATCCTGTGTGCTTCCACATTGGTTTAACCAGAGCAAAACTGACATCTACAATTGTCATGAACATATTTAAAT
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                     11764 217 - 192599291 GGAATCAGAAAGAGACCCTGACTCCTCTCCTGAGGCCCCTTCCACACCCTGAGCCAGCAGGATCCACGCAGCAGAGGTCATCTGTCCCCAGCTTGGCCCACTGAGGTCAGCACGGCTGG------CCAGGGTAGCTTGTCTCTCAGCTCCCATCCTGTGTACTTCCACATTGGTTTAAccagagcaaaactgaaatctacaatcgtcataaacacatttaaat
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     20950 217 + 192460366 GGAATCAGAAAGAGACCCTGACTCCTCTCCTGAGGCCCCTTCCACACCCTGAGCCAGCAGAATCCACGCAGCAGAGGTCATCTGTCCCCAGCTTGGCCCACTGAGGTCAGCACGGCTGG------CCAGGGTAGCTTGTCTCTCAGCTCCCATCCTGTGTACTTCCACATTGGTTTAAccagagcaaaactgaaatctacaatcgtcataaacacatttaaat
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     19190 217 - 187378091 GGAATCAGAAAGAGACCCTGACTCCTCTCCTGAGGCCCCTTCCACACGCTGAGCCAGCAGGATCCACGCTGCAGAGGTCATCTATCCCCAGCTTGGCCCACTGAGGTCAGCATGGCTGG------CCGGGGTAGCTTGTCTCTCAGCTCCCATCCTGTGTACTTCCACATTGGTTTAACCAGAGCAAAACTGAAATCTACAATTGTCATAAACACATTTAAAT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   370249 217 -  91754291 GGAATCAGGAAGAGGCCCTGACACCTCTCGTGAGGCCCCTTCCACACCCTAAGCCAGCAGGATCCACGCAGCAGAGGTCATCTGTCCCCAGCTTGGCCCACTGAGGTCAGCATGGCTGG------CCAGGGTAGCTTGTCTCTCAGCTCCCATCCTGTGTACTTCCACATTGGTTTAAccagagcaaaactgaaatttacaatcgtcataaacacatttaaat
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   880913 218 -  74750902 GGGATCAAGAAGAAAGCCTGATGCCGCTCCTGAGGCCCCTTCTGCACACCGAGCCAGCAGGATCCATGGAGCAGAGGTCATCCGTCCCCAGCGTGGCTGGCTGAGGCCAGAATTGCTGG----G-CCAGGTGTGCTTGTCTCTCAGCTCGCATCCTGTGTACTTCTGCATTGGTTTAGCCAGAGCAAAACTGAAATCTACAGCTGTCATGAACACATTTAAAT
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65402778 200 -  98207768 GGAATCAGGAAGAGAGCCTGAGT--------------CTTTCTCCAGCCCTGGCCAGCAGGACCCATGGAACAGAGGTCACCT---------TTGGTTTGTTGGGGCCAACATGGCTGGCCCAGCCCAGGGGTATCTGTCTCTCAGCTGCCATCCTATTAGCCCCCACATTGGCTTGGCCTGGGGAAAACTGAAACCTGGGATTGTTGTAAACACATTTAAAA
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29038030 195 +  31377067 GGGATCAAGAAGA---TCCGAGG--TCCCCTGAAGCTCCTCGCT----------------GCCCCGTGATGCAGAGCCCACCCTGCCCC--CCTGGGCCAGCGAGGGCCTTATCACTGG----A-TCTGGTGGGCTTGTCTCCTGGCTTCTGTTCTGTGTTCTTCCACATTGGCTCAGCCAGAGGAAAATGGAAATCTGTGATTTTTGTAAACACATTTAAAT
i canFam3.chr33                C 0 I 123
e nomLeu3.chr11                120821431   0 + 123690457 C
e panTro4.chr3_GL389630_random     43862 1196 +    103936 I

a score=152917.000000
s hg38.chr3_KI270935v1_alt         82337  77 +    197351 gtgcgtagaatcagc----------------------------------------------catacaaattgtgaaa------------------catacatttggctcatggtattattcactgttttgtggtggttaca
s ponAbe2.chr3                 199732810  76 + 202140232 GTGCATAGAATCAGC----------------------------------------------CATACAAATTATGAA-------------------CATATGTTTGGCTCATGGTATTATTCATTGTTTTGTGATGGTAACA
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                     11981  77 - 192599291 gtgcataggatcagc----------------------------------------------catacaaattatgaaa------------------catacgtttggctcacggtattattcattgttttgtgacggctaca
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     21167  77 + 192460366 gtgcataggatcagc----------------------------------------------catacaaattatgaaa------------------catacgtttggctcacggtattattcattgttttgtgacggctaca
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     19407  77 - 187378091 GTGCGTAGGATCAGC----------------------------------------------CATACAAATTATGAAA------------------CATACGTTTGGCTCACGGTATTATTCATTGTTTTGTGACGGCTACA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   370466  77 -  91754291 gtgcataggatcggc----------------------------------------------catacaaatgatgaaa------------------catacgtttggctcgtggtattattcattgttttgtgacggctaca
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   881131  75 -  74750902 GTGTGTAGAATCAGT----------------------------------------------GATACAAGTTACGAAA------------------C--ACGTTTGGCTCACGTTTTTATTCATTGTTTTGTGATGGTTGCA
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65402978  76 -  98207768 GTGCACAGAATTAGC----------------------------------------------CATAAAAATTACAAAA-------------------ATACACTTGGCTCGTAATATTGCTCATTGTGTTGTGACGATTACA
i mm10.chr16                   C 0 I 1021
s canFam3.chr33                 29038348 137 +  31377067 gtgcatggagcctgcttctccctctgcctatgtctctgcttctctctctctgtgactatcataaataagttaaaaaaaaaCACACACAAAAAAAACATAAATTTGGCTCATGGAAT---TCATCGT-TTGTGGTGGTTACA
i canFam3.chr33                I 123 C 0
e nomLeu3.chr11                120821431   0 + 123690457 C
e panTro4.chr3_GL389630_random     43862 1196 +    103936 I

a score=850080.000000
s hg38.chr3_KI270935v1_alt         82414 422 +    197351 gtgactatagcaaacatttcttgaaagtagaaaataagaacCCAGCACCCCTTGAGCTAAGTAATGTGCCC-TCTGTCCTCAATATTCCTTCCTGGGCTCCACATTACTGCCCTTAAGTCTGGAAATATTCTGGTCTGAGCCCCGTAGTCCAGGCCTCATGTTCAGGC-TTTCTGTCCCCAGTGATGAGAGGAGAGA--CGGCAGACCTGTCTCCGGTGAGCTCAGATGGGCCTCCC-GGAGTCTCCTGGGGTGCACAGGATTTCAAAGATCCAGGA-GGC-GCTGCCA-GGGGCTGTGAGGTCTGATGAACCTCTCACCTTCCCTCCCACACCTGCCCT--------TTTCCTGTTTCTGTGGATGCTTTTGCTGTCCTTGGCTTCCTGGACTCCAGACCTCAGGGTCATCTTTTGCTTCT-----------------CTCTGCAAGGTGCCAA
s ponAbe2.chr3                 199732886 422 + 202140232 ATGACTATATCAAACATTTCTTGAAAGTAGAAAATAAGAACCCAGCACCCCTTTAGCTAAGTAATGTGCCC-TCTGTCCTCAATATTCCTTCTTGGGCTCCACATTACTGCCCTTAAATCTGGAAATATTCTGGTCTGAGCCCCATAGTCCAGGCCTCATGTTCAGGC-TTTCTGTCCCCAGTGATGAAAGGAGAGG--CGGCAGACCTTTCTCCGATGAGCTCAGATGGGCCTCCC-AGAGTCTCCTGGGATGCACAGGATTTCAAAGATCCAGGA-GGA-GCTGCCA-GGGGCTGTGGGGTCTGATGAACCTCTCACCTTCCCTCCCGCACCTGCCAT--------TTTCCTGTTTCTGTGAATGCTTTCCCTGTCCTTGGCTTCCTGGACTCCAGACCTCAGGGTCATCTATTGCTTCT-----------------CTCTGCAAGGTGCCAA
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                     12058 421 - 192599291 atgactatagcaaacatttctcgaaagtagaaaataagaacCCAGCACCCCTTTAGCTAAGTAATGTGCCC-TCTTTCCTCAATATTCCTTCCCGGGCTCCACATTACTGCCCTTAAGTCTGGAAATATTCTGGTCTGAGCCCCGTAGTCCAGGCCTCATATTCAGGC-TTTCTGTCCCCAGTGATGAAAGGAGAGG--CGGCAGACCTTTCTCCGGTGAGCTCAGATGGGCCTCCT-GGAGTCTCCTGGGGCGCACAGGATTTCAAAGATCCAGGA-GGG-GCTGCCC-GGGGCTGTGGGGTCTGATGAACCTCTCACATTCCCTCCCACACCTGCCCT--------TTTCCTGTTTCTGTGAATGCTTTCCCTGTCC-TGACTTCCTGGACTCCAGACCTCAGGGTCATCTTTTGCTTCT-----------------CTCTGCAAGGTGCCAA
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     21244 421 + 192460366 atgactatagcaaacatttctcgaaagtagaaaataagaacCCAGCACCCCTTTAGCTAAGTAATGTGCCC-TCTTTCCTCAATATTCCTTCCCGGGCTCCACATTACTGCCCTTAAGTCTGGAAATATTCTGGTCTGAGCCCCGTAGTCCAGGCCTCATATTCAGGC-TTTCTGTCCCCAGTGATGAAAGGAGAGG--CGGCAGACCTTTCTCCGGTGAGCTCAGATGGGCCTCCT-GGAGTCTCCTGGGGCGCACAGGATTTCAAAGATCCAGGA-GGG-GCTGCCC-GGGGCTGTGGGGTCTGATGAACCTCTCACATTCCCTCCCACACCTGCCCT--------TTTCCTGTTTCTGTGAATGCTTTCCCTGTCC-TGACTTCCTGGACTCCAGACCTCAGGGTCATCTTTTGCTTCT-----------------CTCTGCAAGGTGCCAA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     19484 421 - 187378091 ATGACTATAGCAAACATTTCTCGAAAGTAGAAAATAAGAACCCAGCACCCCTTTAGCTAAGTAATGTGCCC-TCTTTTCTCAATATTCCTTCCCGGGCTCCACATTACTGCCCTTAAGCCTGGAAATATTCTGGTCTCAGCCCCGTAGTCCAGGCCTCATATTCAGGC-TTTCTGTCCCCAGTGATGAAAGGAGAGG--CGGCAGACCTTTCTCTGGTGAGCTCAGATGGGCCTCCT-GGAGTCTCCTGGGGCGCACAAGATTTCAAAGATCCAGGA-GGg-gctgcca-ggggctgtgggGTCTGATGAACCTCTCACATTCCCTCCCACACCTGCCCT--------TTTCCCGTTTCTGTGAATGCTTTCCCTGTCC-TGACTTCCTGGACTCCAGACCTCAGGGTCATCTTTTGCTTCT-----------------CTCTGCAAGGTGCCAA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   370543 416 -  91754291 atgactatagcaaacatttcttgaaagtagaaaataagaacacagCACCCCTTTAGGTAAGTAATGTGCCC-TCTTTCCTCAATATTCCTTCCTGGGCTCCACATTACTGCCCTTAAGTCTGGAAATATTCTGGTCTGAGCCCCGTAGT-CAGGCCTCATATTCAGGC-TTTCTGTCCCCAGTGATGAAAGGAGAGG--CGGCAGACCTTTTTCCGGTGAGCTC----GGGCGTCCT-GGAGTCTCCTGGGGCGCACAGGATTTCAAAGATCCAGGA-GGG-GCTGCCA-GGGGCTGTGGGGTCTGATGAACCTCTCACACTCCCTCCCACACCTGCCCT--------TTTCCCGTTTCTGTGAATGCTTTCCCTGTCC-TGACTTCCTGGACTCCAGCCCTCAGGGTCATCTTTTGCTTCT-----------------CTCTGCAAGGTGCCAA
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   881206 430 -  74750902 ATTACTATAGCAAACATTTCTTGAAAGTAGAAAATAAAAACCCAGCATCCCTTTAGCTAAGTAATTTGTGC-TGTCTCCTCAATATTCCTTCCCGGGCTCCACATTACCGCCCTTAAGTCCGGAAATATTCTGGTCTGAG-CCCGTAGTCCAGGCCTTATGTTCAGGC-TTCCTCTCCCCAGAAATGAAAGGAGAGG--CGGCCGACCTTTCTCCAGTGAGCCCAGATGGGCCTCTG-GCAGTCTCCTGGGGTGCATGGGATTTCCGAGATTGAGGAGGGG-GCTTCCA-GGGGCTGTGGGGTCTGATGAACCAATCACTTTCCCTTCCACAGCTACCCTTTCTACCCTTTTCTGTTTCTGTGGATGGTTTCCCTGTCCTTGGCTTCCTGGACTCCAGGCCTCAGGGTCATCTTCTGCTTCT-----------------CTCTGCAAGTTGCCAA
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29038485 436 +  31377067 ATGAATAGAGCAAACATTTCTTGAAAGTGGAATATGAGAACCTAGCACTTCTTTGGCTAAGTGATCCCTGCATCCTTCCTCAATATTCCTTCCCAGGCACCATATCACTGCCTGTAAGTCCCAAAATAGCCTGGTCTGAGCCCTGT------GGCCTCACGCCTGCCCACCTCTCTTCCTAGAG-TGAAAAGAGAGGGAAGGGGGACCTTCCTCTGGTGGGTTGGGACTGGCCTCCCAGGAGTTTCCTTGTGTG---AGGATTTCATAGCTCCGGGA-GGGTGAAGCCAGGGGGCTTTGGGGTCCGCTGAGCCCGTCGCCTTCCCTCTCAGACCTACTCC--------TCCTCCTGTTCCATGAATAGATCCCTACCCTTCAGCTTCCTGCACTCCAAGCCTCGGGATCTTCTTTTAATTCTCTCTGCCTCTGCCCTTCCTCTGCAAGGTGCCAA
i canFam3.chr33                C 0 C 0
e mm10.chr16                    65403054 1021 -  98207768 I
e nomLeu3.chr11                120821431   0 + 123690457 C
e panTro4.chr3_GL389630_random     43862 1196 +    103936 I

a score=10096.000000
s hg38.chr3_KI270935v1_alt         82836 14 +    197351 GTCTCTCTAGGttt
s ponAbe2.chr3                 199733308 14 + 202140232 GTCTCTCTAGtttt
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                     12479  9 - 192599291 GTCTCTCTG-----
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     21665  9 + 192460366 GTCTCTCTG-----
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     19905  9 - 187378091 GTCTCTCTA-----
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   370959  9 -  91754291 GTCTCTCTA-----
i chlSab2.chr15                C 0 C 0
s canFam3.chr33                 29038921 14 +  31377067 GTCTTTCTAGTTCT
i canFam3.chr33                C 0 I 2307
e mm10.chr16                    65403054 1021 -  98207768 I
e calJac3.chr17                   881636  0 -  74750902 C
e nomLeu3.chr11                120821431  0 + 123690457 C
e panTro4.chr3_GL389630_random     43862 1196 +    103936 I

a score=156150.000000
s hg38.chr3_KI270935v1_alt         82850 128 +    197351 ttgtttgtttgttttgttattgagacggagtctcactctattgcccaggctggagtgcagtggtgcgatctcagctcactgcaacttccgactccctggttcaagcaaattctcctgcctcagcctct
s ponAbe2.chr3                 199733322 127 + 202140232 ttgtttgtttgttttgttattgagatggagtctcactctattgcccaggctggagtgtagtggcacgatctcagctcactgcaacctccgactccctggttcaagc-aattctcctgcctcagcctct
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                     12488 125 - 192599291 --Gtttgtttgatttgttattgaggcggagtctcactgtactgcccaggctggagtgcagcggcgcgacctctgctcactgcaacctccaactccctggttcaagc-gattctcctgcctcagcctct
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     21674 125 + 192460366 --Gtttgtttgatttgttattgaggtggagtctcactgtactgcccaggctggagtgcagcagcacaacctctgctcactgcaacctccaactccctggttcaagt-gattctcctgcctcagcctct
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     19914 125 - 187378091 --GTTTGTTTGATTTGTtattgaggcggagtctcactgtactgcccaggctggagtgcagcggcgcgacctctgctcactgcaacctccaactccctggttcaagt-gattctcctgcctcagcctct
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   370968 124 -  91754291 --Gtttgtttgatttgttattgaggcggagtctcactgtactgtccaggctggagtgcag-ggcgcgatctcagctcactgcaacctccaactccctggttcaagc-aattctcctgcctcagcctct
i chlSab2.chr15                C 0 C 0
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881636   0 -  74750902 C
e nomLeu3.chr11                120821431   0 + 123690457 C
e panTro4.chr3_GL389630_random     43862 1196 +    103936 I

a score=243589.000000
s hg38.chr3_KI270935v1_alt         82978 175 +    197351 ggagtagctgggattacaggcgcccgccaccacgcctggctatttt---------------------------------------tttttt-------tttctagtagagatagggtttcaccatgttggccaggctggtctcgatctcctg------------------------------acctcatgatccacccgccttggcctcccaaagtgctgggattacaggagtgagccactgtgcccggcc
s ponAbe2.chr3                 199733449 182 + 202140232 gaagtagctgggattacaggtgcctgccaccacgcctgtctatttt---------------------------------------ttttttttactgatttttagtagagatagggtttcaccatgttggccagtctggtcttgttctcctg------------------------------acctcatgatccgcccgccttggcctcccaaagtgctgggattacaggagtgagccactgtgcctggcc
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120821431 182 + 123690457 Ggagtagctgggattacaggtgcctgccaccacacctggctatttt---------------------------------------ttttttttattgatttttagtagagatagggtttcaccatgttggccaggctggtctcgatctcctg------------------------------accttgtgatctgcccaccttggcctcccaaagtgctgggattacaggagtgagccactgtgcacggcc
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr2                     12613 184 - 192599291 ggagtcgctgggattacaggcacccgccaccacagctggcttttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-------------------------------------------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgatccgcctgccttggcctcccaaagtgctgggattacaggagtgagccactgtgcccggcc
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     21799 182 + 192460366 ggagtcgctgggattacaggcacccgccaccacagctggctttttt---------------------------------------ttttttttctggatttttagtagagatacggtttcaccatgttggccaggctggtctcgatctcctg------------------------------acctcgtgatccgcctgccttggcctcccaaagtgctgggattacaggagtgagccactgtgcccggcc
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     20039 179 - 187378091 ggagtcgctgggattacaggcacccgccaccacagctggctttttt------------------------------------------tttttctggatttttagtagagatacggtttcaccatgttggccaggctagtctcgatctcctg------------------------------acctcgtgatccgcctgccttggcctcccaaagtgctgggattacaggagtgagccactgtgcccggcc
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   371092 178 -  91754291 ggagtcgctgggattacaggcgcccgccaccacagctggctttttt-------------------------------------------ttttctggatttttagtagagatacggtttcaccatgttggccaggctggtctcgatctcctg------------------------------acctcgtgatccacctgccttggcctcccaaagtgctgggattacaggagtgagccactgtgcccggcc
i chlSab2.chr15                C 0 C 0
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881636   0 -  74750902 C
e panTro4.chr3_GL389630_random     43862 1196 +    103936 I

a score=194843.000000
s hg38.chr3_KI270935v1_alt         83153 84 +    197351 GTCTCTCTAGTTTTACTTTGCAATGTCGTTCATATCCATCCCCTTTCTAGTGCCACTGCTGAAGTCCTAAGTCACTGCCTCCTA
s ponAbe2.chr3                 199733631 84 + 202140232 ATCTCTCTAGTTTTACTCTGCCATATCATTCATATCCATCCCCTTTCTAGTCCCACTGCTGAAGTCCTAGGTCACAGCCTTCTA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120821613 84 + 123690457 ATCTCTCTAGTTTTACTTTGCAATGTTGTTCATATCCATCCCCTTTCTAGTCCCACTGCTGAAGTCCTAGGTCATGGCCTCCTA
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr2                     12797 84 - 192599291 ATCTCTCTAGTTTTACTTTGCAATATCGTTCATACCCATCCCCTTTCTAGTCGCGCTGCTGAAGTcctgggtcacggcctcctg
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     21981 84 + 192460366 ATCTCTCTAGTTTTACTTTGCAATATCGTTCATACCCATCCCCTTTCTAGTCGCGCTGCTGAAGTCCTGGGTCACGGCCTCCTA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     20218 84 - 187378091 atctcTCTAGTTTTACTTTGCAATATCGTTCATACCCATCCCCTTTCTAGTCCCGCTGCTGAAGTCCTGGGTCACGGcctccta
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   371270 84 -  91754291 ATCTCTCTAGTTTTACTTTGCAATATCGTTCATACCCATCCCCTTTCTAGTCCCACTGCTGAAGTCCTGGGTCACGGCCTCCTA
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   881636 83 -  74750902 GTCTCTCTAGTTTTACTTTGTAATATCGTTCATATCCATCCCC-TTCTAGTCCCACTGCTGAAGCCCTAGGTCACAGCCTCCTA
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e panTro4.chr3_GL389630_random     43862 1196 +    103936 I

a score=5922.000000
s hg38.chr3_KI270935v1_alt         83237 3 +    197351 ACT
s ponAbe2.chr3                 199733715 3 + 202140232 ACT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120821697 3 + 123690457 ACT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chr2                     12881 3 - 192599291 act
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     22065 3 + 192460366 ACT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     20302 3 - 187378091 act
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   371354 3 -  91754291 ACT
i chlSab2.chr15                C 0 C 0
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719 0 -  74750902 C
e panTro4.chr3_GL389630_random     43862 1196 +    103936 I

a score=1000.000000
s hg38.chr3_KI270935v1_alt         83240 1 +    197351 G
s ponAbe2.chr3                 199733718 1 + 202140232 G
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                     12884 1 - 192599291 g
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     22068 1 + 192460366 G
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     20305 1 - 187378091 g
i papAnu2.chr2                 C 0 C 0
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719 0 -  74750902 C
e chlSab2.chr15                   371357 0 -  91754291 C
e nomLeu3.chr11                120821700 0 + 123690457 C
e panTro4.chr3_GL389630_random     43862 1196 +    103936 I

a score=8007.000000
s hg38.chr3_KI270935v1_alt         83241 9 +    197351 GTCCTCCTG
s panTro4.chr3_GL389630_random     45058 9 +    103936 gtcctcctg
i panTro4.chr3_GL389630_random I 1196 C 0
s ponAbe2.chr3                 199733719 9 + 202140232 GTCCTCCTG
i ponAbe2.chr3                 C 0 T 10
s rheMac3.chr2                     12885 9 - 192599291 gtccccctg
i rheMac3.chr2                 C 0 C 0
s papAnu2.chr2                     20306 9 - 187378091 gtccccctg
i papAnu2.chr2                 C 0 C 0
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719 0 -  74750902 C
e chlSab2.chr15                   371357 0 -  91754291 C
e macFas5.chr2                     22069 0 + 192460366 C
e nomLeu3.chr11                120821700 0 + 123690457 C

a score=3438.000000
s hg38.chr3_KI270935v1_alt         83250 6 +    197351 CCCTAA
s panTro4.chr3_GL389630_random     45067 6 +    103936 ccctaa
i panTro4.chr3_GL389630_random C 0 C 0
s rheMac3.chr2                     12894 6 - 192599291 ccctaa
i rheMac3.chr2                 C 0 C 0
s papAnu2.chr2                     20315 6 - 187378091 ccctaa
i papAnu2.chr2                 C 0 C 0
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719 0 -  74750902 C
e chlSab2.chr15                   371357 0 -  91754291 C
e macFas5.chr2                     22069 0 + 192460366 C
e ponAbe2.chr3                 199733728 10 + 202140232 T
e nomLeu3.chr11                120821700 0 + 123690457 C

a score=2346.000000
s hg38.chr3_KI270935v1_alt         83256 8 +    197351 CTCCTCCC
s panTro4.chr3_GL389630_random     45073 8 +    103936 ctcctccc
i panTro4.chr3_GL389630_random C 0 C 0
s papAnu2.chr2                     20321 8 - 187378091 ctcctccc
i papAnu2.chr2                 C 0 C 0
e rheMac3.chr2                     12900 0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719 0 -  74750902 C
e chlSab2.chr15                   371357 0 -  91754291 C
e macFas5.chr2                     22069 0 + 192460366 C
e ponAbe2.chr3                 199733728 10 + 202140232 T
e nomLeu3.chr11                120821700 0 + 123690457 C

a score=1079.000000
s hg38.chr3_KI270935v1_alt         83264 16 +    197351 TGACCAGTCCTCCAGC
s panTro4.chr3_GL389630_random     45081 16 +    103936 tgactggtcctcctgc
i panTro4.chr3_GL389630_random C 0 T 88
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371357  0 -  91754291 C
e macFas5.chr2                     22069  0 + 192460366 C
e papAnu2.chr2                     20329  0 - 187378091 C
e ponAbe2.chr3                 199733728 10 + 202140232 T
e nomLeu3.chr11                120821700  0 + 123690457 C

a score=5624.000000
s hg38.chr3_KI270935v1_alt         83280 49 +    197351 CCTAAGTCTCCTCCCTGACCTGTCCTCCTGCCCTAA-CTCCTCCCTGACC
s panTro4.chr3_GL389630_random     45009 48 +    103936 cctgagtctcCTCCCTGACC-GTCCTcctgccctagtctcctcc-tgacc
i panTro4.chr3_GL389630_random T 88 C 0
s macFas5.chr2                     22069 28 + 192460366 ---------------------GTCCCCCTGCCCTAA-CTCCTCCCCGACC
i macFas5.chr2                 C 0 C 0
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371357  0 -  91754291 C
e papAnu2.chr2                     20329  0 - 187378091 C
e ponAbe2.chr3                 199733728 10 + 202140232 T
e nomLeu3.chr11                120821700  0 + 123690457 C

a score=36276.000000
s hg38.chr3_KI270935v1_alt         83329 45 +    197351 GGTCCTCCTGCCCTAACTCCTCCCTGACCGGTCCTCCTGCCCTAA
s panTro4.chr3_GL389630_random     45057 45 +    103936 tgtcctcctgccctaactcctccctgactggtcctcctgccctaa
i panTro4.chr3_GL389630_random C 0 I 90
s ponAbe2.chr3                 199733718 45 + 202140232 GGTCCTCCTGCCCTAACTCCTCCCTGACTTGTCCTCCTGCCCTAA
i ponAbe2.chr3                 T 10 C 0
s nomLeu3.chr11                120821700 44 + 123690457 GGTCCCCCTGCCCTAACTCCTCCCTGACTGG-CCTCCTGCCCTAA
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     22097 45 + 192460366 GGTCCCCCTGCCCTAGCTCCTCCCCGACCGGTCCCCCTGCCCTAG
i macFas5.chr2                 C 0 T 29
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371357  0 -  91754291 C
e papAnu2.chr2                     20329  0 - 187378091 C

a score=30770.000000
s hg38.chr3_KI270935v1_alt         83374 41 +    197351 CTCCTCCCTGACCGATCCTCCTGCCCTAA--CTCCTCCCTGAC
s panTro4.chr3_GL389630_random     45192 43 +    103936 CTCCTCCCTGACCCGTCTTCCTGCCCTGAGTCTCCTCCCTGAC
i panTro4.chr3_GL389630_random I 90 C 0
s ponAbe2.chr3                 199733763 41 + 202140232 CTCCTCCCTGACTGATCCTCCAGCCTTAA--CTCCTCCCTGAC
i ponAbe2.chr3                 C 0 T 58
s nomLeu3.chr11                120821744 41 + 123690457 CTCCTCCCTGACCGGTCCCCCTGCCCTAA--CTCCTCCCTGAC
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     22113 41 + 192460366 CTCCTCCCCGACCGGTCCCCCTGCCCTAG--CTCCTCCCGGAC
i macFas5.chr2                 T 29 C 0
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371357  0 -  91754291 C
e papAnu2.chr2                     20329  0 - 187378091 C

a score=10500.000000
s hg38.chr3_KI270935v1_alt         83415 17 +    197351 CTGTCCTACTGCCCT-AA
s panTro4.chr3_GL389630_random     45235 18 +    103936 CGGTCCTCCTACCCTTAA
i panTro4.chr3_GL389630_random C 0 T 149
s ponAbe2.chr3                 199733746 17 + 202140232 TTGTCCTCCTGCCCT-AA
i ponAbe2.chr3                 T 58 C 0
s nomLeu3.chr11                120821785 17 + 123690457 CCGTCCTCCTGCCCT-AA
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     22154 17 + 192460366 TGGTCCCCCTGCCCT-AA
i macFas5.chr2                 C 0 C 0
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371357  0 -  91754291 C
e papAnu2.chr2                     20329  0 - 187378091 C

a score=14219.000000
s hg38.chr3_KI270935v1_alt         83432 17 +    197351 CTCCTCCCTGACCGGTC
s panTro4.chr3_GL389630_random     45104 17 +    103936 ctcctccctgaccagtc
i panTro4.chr3_GL389630_random T 149 C 0
s ponAbe2.chr3                 199733763 17 + 202140232 CTCCTCCCTGACTGATC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120821802 17 + 123690457 CTCCTCCCTGACCGGTC
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     22171 17 + 192460366 CTCCTCCCTGACTGGCC
i macFas5.chr2                 C 0 T 29
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371357  0 -  91754291 C
e papAnu2.chr2                     20329  0 - 187378091 C

a score=9447.000000
s hg38.chr3_KI270935v1_alt         83449 12 +    197351 CTCCTGCCCTAA
s panTro4.chr3_GL389630_random     45121 12 +    103936 ctcctgccctaa
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199733780 12 + 202140232 CTCCAGCCTTAA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120821819 12 + 123690457 CCCCTGCCCTAA
i nomLeu3.chr11                C 0 I 87
s macFas5.chr2                     22159 12 + 192460366 CCCCTGCCCTAA
i macFas5.chr2                 T 29 C 0
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371357  0 -  91754291 C
e papAnu2.chr2                     20329  0 - 187378091 C

a score=6984.000000
s hg38.chr3_KI270935v1_alt         83461 12 +    197351 CTCCTCCCTGAC
s panTro4.chr3_GL389630_random     45133 12 +    103936 ctcctccctgac
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199733792 12 + 202140232 CTCCTCCCTGAC
i ponAbe2.chr3                 C 0 T 85
s macFas5.chr2                     22171 12 + 192460366 CTCCTCCCTGAC
i macFas5.chr2                 C 0 C 0
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371357  0 -  91754291 C
e papAnu2.chr2                     20329  0 - 187378091 C
e nomLeu3.chr11                120821831 87 + 123690457 I

a score=705.000000
s hg38.chr3_KI270935v1_alt         83473 5 +    197351 CAGTC
s panTro4.chr3_GL389630_random     45145 5 +    103936 cggtc
i panTro4.chr3_GL389630_random C 0 C 0
s macFas5.chr2                     22183 5 + 192460366 TGGCC
i macFas5.chr2                 C 0 T 130
e rheMac3.chr2                     12900 0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719 0 -  74750902 C
e chlSab2.chr15                   371357 0 -  91754291 C
e papAnu2.chr2                     20329 0 - 187378091 C
e ponAbe2.chr3                 199733804 85 + 202140232 T
e nomLeu3.chr11                120821831 87 + 123690457 I

a score=682.000000
s hg38.chr3_KI270935v1_alt         83478 7 +    197351 CTCCTGC
s panTro4.chr3_GL389630_random     45150 7 +    103936 ctcctgc
i panTro4.chr3_GL389630_random C 0 T 148
e rheMac3.chr2                     12900 0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719 0 -  74750902 C
e chlSab2.chr15                   371357 0 -  91754291 C
e macFas5.chr2                     22188 130 + 192460366 T
e papAnu2.chr2                     20329 0 - 187378091 C
e ponAbe2.chr3                 199733804 85 + 202140232 T
e nomLeu3.chr11                120821831 87 + 123690457 I

a score=542.000000
s hg38.chr3_KI270935v1_alt         83485 7 +    197351 CCTAAGT
s panTro4.chr3_GL389630_random     45009 7 +    103936 cctgagt
i panTro4.chr3_GL389630_random T 148 C 0
e rheMac3.chr2                     12900 0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719 0 -  74750902 C
e chlSab2.chr15                   371357 0 -  91754291 C
e macFas5.chr2                     22188 130 + 192460366 T
e papAnu2.chr2                     20329 0 - 187378091 C
e ponAbe2.chr3                 199733804 85 + 202140232 T
e nomLeu3.chr11                120821831 87 + 123690457 I

a score=5556.000000
s hg38.chr3_KI270935v1_alt         83492 29 +    197351 CTCCTCCCTGACCGGTCCTCCTGCCCTAA
s panTro4.chr3_GL389630_random     45016 27 +    103936 ctcCTCCCTGACCG-TCCTcctgcccta-
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120821918 28 + 123690457 CTCCTCCCTGACTG-GCCTCCTGCCCTAA
i nomLeu3.chr11                I 87 T 115
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371357  0 -  91754291 C
e macFas5.chr2                     22188 130 + 192460366 T
e papAnu2.chr2                     20329  0 - 187378091 C
e ponAbe2.chr3                 199733804 85 + 202140232 T

a score=191.000000
s hg38.chr3_KI270935v1_alt         83521 2 +    197351 GT
s panTro4.chr3_GL389630_random     45043 2 +    103936 gt
i panTro4.chr3_GL389630_random C 0 C 0
e rheMac3.chr2                     12900 0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719 0 -  74750902 C
e chlSab2.chr15                   371357 0 -  91754291 C
e macFas5.chr2                     22188 130 + 192460366 T
e papAnu2.chr2                     20329 0 - 187378091 C
e ponAbe2.chr3                 199733804 85 + 202140232 T
e nomLeu3.chr11                120821946 115 + 123690457 T

a score=873.000000
s hg38.chr3_KI270935v1_alt         83523 3 +    197351 CTC
s panTro4.chr3_GL389630_random     45045 3 +    103936 ctc
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120821831 3 + 123690457 CTC
i nomLeu3.chr11                T 115 C 0
e rheMac3.chr2                     12900 0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719 0 -  74750902 C
e chlSab2.chr15                   371357 0 -  91754291 C
e macFas5.chr2                     22188 130 + 192460366 T
e papAnu2.chr2                     20329 0 - 187378091 C
e ponAbe2.chr3                 199733804 85 + 202140232 T

a score=2673.000000
s hg38.chr3_KI270935v1_alt         83526 11 +    197351 -CTCCCTGACCT
s panTro4.chr3_GL389630_random     45048 10 +    103936 -ctcc-tgacct
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120821834 11 + 123690457 -CTCCCTGACCT
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     22058 11 + 192460366 CCTCC-TAACTG
i macFas5.chr2                 T 130 C 0
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371357  0 -  91754291 C
e papAnu2.chr2                     20329  0 - 187378091 C
e ponAbe2.chr3                 199733804 85 + 202140232 T

a score=13737.000000
s hg38.chr3_KI270935v1_alt         83537 15 +    197351 GTCCTCCTGCCCTAA
s panTro4.chr3_GL389630_random     45058 15 +    103936 gtcctcctgccctaa
i panTro4.chr3_GL389630_random C 0 I 150
s ponAbe2.chr3                 199733719 15 + 202140232 GTCCTCCTGCCCTAA
i ponAbe2.chr3                 T 85 C 0
s nomLeu3.chr11                120821845 15 + 123690457 GTCCCCCTGCCCTAA
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     22069 15 + 192460366 GTCCCCCTGCCCTAA
i macFas5.chr2                 C 0 C 0
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371357  0 -  91754291 C
e papAnu2.chr2                     20329  0 - 187378091 C

a score=51728.000000
s hg38.chr3_KI270935v1_alt         83552 70 +    197351 CTCCTCCCTGACCAGTCCTCCTGCCCT-AACTCCTCCCTGACCGGTCCTCCAGCCCTAACTCCTCCCTGAC
s panTro4.chr3_GL389630_random     45223 70 +    103936 CTCCTCCCTGACCGGTCCTCCTACCCTTAACTCCTCCCTGACTGG-CCTCCTACCCTAACTCCTCTCTGAC
i panTro4.chr3_GL389630_random I 150 C 0
s ponAbe2.chr3                 199733734 70 + 202140232 CTCCTCCCTGACTTGTCCTCCTGCCCT-AACTCCTCCCTGACTGATCCTCCAGCCTTAACTCCTCCCTGAC
i ponAbe2.chr3                 C 0 T 86
s nomLeu3.chr11                120821860 70 + 123690457 CTCCTCCCTGACCAGTCCCCCTGCCCT-AACTCCTCCCTGACCCATCCTCCAGTCCTAACTCCTCCCTGAC
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     22084 70 + 192460366 CTCCTCCCCGACCGGTCCCCCTGCCCT-AGCTCCTCCCCGACCGGTCCCCCTGCCCTAGCTCCTCCCGGAC
i macFas5.chr2                 C 0 C 0
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371357  0 -  91754291 C
e papAnu2.chr2                     20329  0 - 187378091 C

a score=734.000000
s hg38.chr3_KI270935v1_alt         83622 3 +    197351 CAG
s panTro4.chr3_GL389630_random     45293 3 +    103936 CAG
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120821930 3 + 123690457 TGG
i nomLeu3.chr11                C 0 I 115
s macFas5.chr2                     22154 3 + 192460366 TGG
i macFas5.chr2                 C 0 C 0
e rheMac3.chr2                     12900 0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719 0 -  74750902 C
e chlSab2.chr15                   371357 0 -  91754291 C
e papAnu2.chr2                     20329 0 - 187378091 C
e ponAbe2.chr3                 199733804 86 + 202140232 T

a score=273.000000
s hg38.chr3_KI270935v1_alt         83625 1 +    197351 T
s panTro4.chr3_GL389630_random     45296 1 +    103936 T
i panTro4.chr3_GL389630_random C 0 C 0
s macFas5.chr2                     22157 1 + 192460366 T
i macFas5.chr2                 C 0 C 0
e rheMac3.chr2                     12900 0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719 0 -  74750902 C
e chlSab2.chr15                   371357 0 -  91754291 C
e papAnu2.chr2                     20329 0 - 187378091 C
e ponAbe2.chr3                 199733804 86 + 202140232 T
e nomLeu3.chr11                120821933 115 + 123690457 I

a score=6798.000000
s hg38.chr3_KI270935v1_alt         83626 13 +    197351 CCTCCTGCCCTAA
s panTro4.chr3_GL389630_random     45297 13 +    103936 CCTCCTGCCCTGA
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120822048 13 + 123690457 CCTCCTGCCCTAA
i nomLeu3.chr11                I 115 C 0
s macFas5.chr2                     22158 13 + 192460366 CCCCCTGCCCTAA
i macFas5.chr2                 C 0 T 113
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371357  0 -  91754291 C
e papAnu2.chr2                     20329  0 - 187378091 C
e ponAbe2.chr3                 199733804 86 + 202140232 T

a score=682.000000
s hg38.chr3_KI270935v1_alt         83639 5 +    197351 GTCTC
s panTro4.chr3_GL389630_random     45310 3 +    103936 --CTT
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120822061 5 + 123690457 GTCTC
i nomLeu3.chr11                C 0 C 0
e rheMac3.chr2                     12900 0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719 0 -  74750902 C
e chlSab2.chr15                   371357 0 -  91754291 C
e macFas5.chr2                     22171 113 + 192460366 T
e papAnu2.chr2                     20329 0 - 187378091 C
e ponAbe2.chr3                 199733804 86 + 202140232 T

a score=4293.000000
s hg38.chr3_KI270935v1_alt         83644 10 +    197351 CTCCCTGACC
s panTro4.chr3_GL389630_random     45313 10 +    103936 CTCCCTGACC
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120822066 10 + 123690457 CTCCCTGACC
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     22058 10 + 192460366 CCTCCTAACT
i macFas5.chr2                 T 113 C 0
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371357  0 -  91754291 C
e papAnu2.chr2                     20329  0 - 187378091 C
e ponAbe2.chr3                 199733804 86 + 202140232 T

a score=2386.000000
s hg38.chr3_KI270935v1_alt         83654 3 +    197351 GGT
s panTro4.chr3_GL389630_random     45323 3 +    103936 GAT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199733718 3 + 202140232 GGT
i ponAbe2.chr3                 T 86 C 0
s nomLeu3.chr11                120822076 3 + 123690457 GGT
i nomLeu3.chr11                C 0 T 146
s macFas5.chr2                     22068 3 + 192460366 GGT
i macFas5.chr2                 C 0 C 0
e rheMac3.chr2                     12900 0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719 0 -  74750902 C
e chlSab2.chr15                   371357 0 -  91754291 C
e papAnu2.chr2                     20329 0 - 187378091 C

a score=56515.000000
s hg38.chr3_KI270935v1_alt         83657 71 +    197351 CCTCCTGCCCTAACTCCTCCCTGACCGGTCCTCCTGCCCTAACTCCTCCCTGACCGGTCCTCCAGCCCTAA
s panTro4.chr3_GL389630_random     45326 71 +    103936 TTTCCTGCCCTAACTCCTCCCTGACCAGTCCCCCTGCTCTAACTCCTCCCTGACCGATCCTCTAGCCCTAA
i panTro4.chr3_GL389630_random C 0 I 118
s ponAbe2.chr3                 199733721 71 + 202140232 CCTCCTGCCCTAACTCCTCCCTGACTTGTCCTCCTGCCCTAACTCCTCCCTGACTGATCCTCCAGCCTTAA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120821933 71 + 123690457 CCTCCTGCCCTAACTCCTCCCTGACCGGTCCCCCTGCCCTAACTCCTCCCTGACCAAGCCCCCTGCCCTAA
i nomLeu3.chr11                T 146 C 0
s macFas5.chr2                     22071 71 + 192460366 CCCCCTGCCCTAACTCCTCCCCGACCGGTCCCCCTGCCCTAGCTCCTCCCCGACCGGTCCCCCTGCCCTAG
i macFas5.chr2                 C 0 C 0
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371357  0 -  91754291 C
e papAnu2.chr2                     20329  0 - 187378091 C

a score=10820.000000
s hg38.chr3_KI270935v1_alt         83728 12 +    197351 CTCCTCCCTGAC
s panTro4.chr3_GL389630_random     45515 12 +    103936 ctcctccctgac
i panTro4.chr3_GL389630_random I 118 C 0
s ponAbe2.chr3                 199733792 12 + 202140232 CTCCTCCCTGAC
i ponAbe2.chr3                 C 0 T 58
s nomLeu3.chr11                120822004 12 + 123690457 CTCCTCCCTGAC
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     22142 12 + 192460366 CTCCTCCCGGAC
i macFas5.chr2                 C 0 C 0
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371357  0 -  91754291 C
e papAnu2.chr2                     20329  0 - 187378091 C

a score=24355.000000
s hg38.chr3_KI270935v1_alt         83740 32 +    197351 CGGTCCTCCTGCCCTAACTCCTCCCTGACCGG
s panTro4.chr3_GL389630_random     45527 32 +    103936 cagtccccctgccctaactcctccctgacctg
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199733746 32 + 202140232 TTGTCCTCCTGCCCTAACTCCTCCCTGACTGA
i ponAbe2.chr3                 T 58 C 0
s nomLeu3.chr11                120822016 32 + 123690457 CCAGCCCCCTGCCCTAACTCCTCCCTGACTGG
i nomLeu3.chr11                C 0 I 324
s macFas5.chr2                     22154 32 + 192460366 TGGTCCCCCTGCCCTAACTCCTCCCTGACTGG
i macFas5.chr2                 C 0 C 0
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371357  0 -  91754291 C
e papAnu2.chr2                     20329  0 - 187378091 C

a score=780.000000
s hg38.chr3_KI270935v1_alt         83772 2 +    197351 TC
s panTro4.chr3_GL389630_random     45559 2 +    103936 tc
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199733778 2 + 202140232 TC
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr2                     22186 2 + 192460366 CC
i macFas5.chr2                 C 0 T 29
e rheMac3.chr2                     12900 0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719 0 -  74750902 C
e chlSab2.chr15                   371357 0 -  91754291 C
e papAnu2.chr2                     20329 0 - 187378091 C
e nomLeu3.chr11                120822048 324 + 123690457 I

a score=600.000000
s hg38.chr3_KI270935v1_alt         83774 1 +    197351 C
s panTro4.chr3_GL389630_random     45561 1 +    103936 c
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199733780 1 + 202140232 C
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr2                     22159 1 + 192460366 C
i macFas5.chr2                 T 29 C 0
e rheMac3.chr2                     12900 0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719 0 -  74750902 C
e chlSab2.chr15                   371357 0 -  91754291 C
e papAnu2.chr2                     20329 0 - 187378091 C
e nomLeu3.chr11                120822048 324 + 123690457 I

a score=18901.000000
s hg38.chr3_KI270935v1_alt         83775 23 +    197351 TCCAGCCCTAACTCCTCCCTGAC
s panTro4.chr3_GL389630_random     45562 23 +    103936 tcctgccGTAACTCCTCCCTGAC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199733781 23 + 202140232 TCCAGCCTTAACTCCTCCCTGAC
i ponAbe2.chr3                 C 0 T 85
s nomLeu3.chr11                120822372 23 + 123690457 CCCTGCCCTAACTCCTCCCTGAC
i nomLeu3.chr11                I 324 C 0
s macFas5.chr2                     22160 23 + 192460366 CCCTGCCCTAACTCCTCCCTGAC
i macFas5.chr2                 C 0 C 0
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371357  0 -  91754291 C
e papAnu2.chr2                     20329  0 - 187378091 C

a score=366.000000
s hg38.chr3_KI270935v1_alt         83798 5 +    197351 CAGTC
s panTro4.chr3_GL389630_random     45585 5 +    103936 CAATC
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120822395 5 + 123690457 CCGGC
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     22183 5 + 192460366 TGGCC
i macFas5.chr2                 C 0 T 34
e rheMac3.chr2                     12900 0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719 0 -  74750902 C
e chlSab2.chr15                   371357 0 -  91754291 C
e papAnu2.chr2                     20329 0 - 187378091 C
e ponAbe2.chr3                 199733804 85 + 202140232 T

a score=1224.000000
s hg38.chr3_KI270935v1_alt         83803 8 +    197351 CTCCTCCC
s panTro4.chr3_GL389630_random     45590 8 +    103936 CCCATGCC
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120822400 8 + 123690457 CTCCTGCC
i nomLeu3.chr11                C 0 T 360
e rheMac3.chr2                     12900 0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719 0 -  74750902 C
e chlSab2.chr15                   371357 0 -  91754291 C
e macFas5.chr2                     22188 34 + 192460366 T
e papAnu2.chr2                     20329 0 - 187378091 C
e ponAbe2.chr3                 199733804 85 + 202140232 T

a score=1537.000000
s hg38.chr3_KI270935v1_alt         83811 16 +    197351 CTAACTCCTCCCTGAC
s panTro4.chr3_GL389630_random     45598 16 +    103936 CTAACTCCTccctgac
i panTro4.chr3_GL389630_random C 0 C 0
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371357  0 -  91754291 C
e macFas5.chr2                     22188 34 + 192460366 T
e papAnu2.chr2                     20329  0 - 187378091 C
e ponAbe2.chr3                 199733804 85 + 202140232 T
e nomLeu3.chr11                120822408 360 + 123690457 T

a score=-791.000000
s hg38.chr3_KI270935v1_alt         83827 2 +    197351 CC-
s panTro4.chr3_GL389630_random     45614 2 +    103936 ct-
i panTro4.chr3_GL389630_random C 0 C 0
s macFas5.chr2                     22154 2 + 192460366 -TG
i macFas5.chr2                 T 34 C 0
e rheMac3.chr2                     12900 0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719 0 -  74750902 C
e chlSab2.chr15                   371357 0 -  91754291 C
e papAnu2.chr2                     20329 0 - 187378091 C
e ponAbe2.chr3                 199733804 85 + 202140232 T
e nomLeu3.chr11                120822408 360 + 123690457 T

a score=15294.000000
s hg38.chr3_KI270935v1_alt         83829 27 +    197351 GTCCTCCTGCCCTAACTCCTCCCTGAC
s panTro4.chr3_GL389630_random     45616 27 +    103936 gtcctcctgccctaactcctccctgac
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199733719 27 + 202140232 GTCCTCCTGCCCTAACTCCTCCCTGAC
i ponAbe2.chr3                 T 85 C 0
s macFas5.chr2                     22156 27 + 192460366 GTCCCCCTGCCCTAACTCCTCCCTGAC
i macFas5.chr2                 C 0 T 125
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371357  0 -  91754291 C
e papAnu2.chr2                     20329  0 - 187378091 C
e nomLeu3.chr11                120822408 360 + 123690457 T

a score=4440.000000
s hg38.chr3_KI270935v1_alt         83856 20 +    197351 CTGTCCTCCAGCCCTAACTC
s panTro4.chr3_GL389630_random     45643 20 +    103936 cggtccccctgccctaactc
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199733746 20 + 202140232 TTGTCCTCCTGCCCTAACTC
i ponAbe2.chr3                 C 0 C 0
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371357  0 -  91754291 C
e macFas5.chr2                     22183 125 + 192460366 T
e papAnu2.chr2                     20329  0 - 187378091 C
e nomLeu3.chr11                120822408 360 + 123690457 T

a score=17327.000000
s hg38.chr3_KI270935v1_alt         83876 38 +    197351 CTCCCTGACCAGTCCTCCAGCCCTAACTCCTCCCTGAC
s panTro4.chr3_GL389630_random     45663 38 +    103936 ctccctgaccagtcctctagccctaactcctccctgac
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199733766 38 + 202140232 CTCCCTGACTGATCCTCCAGCCTTAACTCCTCCCTGAC
i ponAbe2.chr3                 C 0 T 85
s macFas5.chr2                     22058 38 + 192460366 CCTCCTAACTGGTCCCCCTGCCCTAACTCCTCCCCGAC
i macFas5.chr2                 T 125 C 0
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371357  0 -  91754291 C
e papAnu2.chr2                     20329  0 - 187378091 C
e nomLeu3.chr11                120822408 360 + 123690457 T

a score=14919.000000
s hg38.chr3_KI270935v1_alt         83914 77 +    197351 CGGTCCTACTGCCCTAA--CTCCTCCCTGACCGGTCCTCCTGCCCTAA--CTCCTCCCTGACCAGTCCTCCTGCCCTAAGT
s panTro4.chr3_GL389630_random     45701 81 +    103936 tggtcctcctgccctaagtctcctccctgacctgtcctcctgccctgagtctcctccctgacctgtcctcctgccctgAGT
i panTro4.chr3_GL389630_random C 0 T 709
s macFas5.chr2                     22096 75 + 192460366 CGGTCCCCCTGCCCTAG--CTCCTCCCCGACCGGTCCCCCTGCCCTAG--CTCCTCCCGGACTGGTCCCCCTGCCCTAA--
i macFas5.chr2                 C 0 C 0
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371357  0 -  91754291 C
e papAnu2.chr2                     20329  0 - 187378091 C
e ponAbe2.chr3                 199733804 85 + 202140232 T
e nomLeu3.chr11                120822408 360 + 123690457 T

a score=4150.000000
s hg38.chr3_KI270935v1_alt         83991 16 +    197351 CTCCTCCCTGACCGGT
s panTro4.chr3_GL389630_random     45073 16 +    103936 ctcctccctgactggt
i panTro4.chr3_GL389630_random T 709 C 0
s macFas5.chr2                     22171 16 + 192460366 CTCCTCCCTGACTGGC
i macFas5.chr2                 C 0 C 0
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371357  0 -  91754291 C
e papAnu2.chr2                     20329  0 - 187378091 C
e ponAbe2.chr3                 199733804 85 + 202140232 T
e nomLeu3.chr11                120822408 360 + 123690457 T

a score=600.000000
s hg38.chr3_KI270935v1_alt         84007 1 +    197351 C
s panTro4.chr3_GL389630_random     45089 1 +    103936 c
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120822048 1 + 123690457 C
i nomLeu3.chr11                T 360 C 0
s macFas5.chr2                     22187 1 + 192460366 C
i macFas5.chr2                 C 0 T 130
e rheMac3.chr2                     12900 0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719 0 -  74750902 C
e chlSab2.chr15                   371357 0 -  91754291 C
e papAnu2.chr2                     20329 0 - 187378091 C
e ponAbe2.chr3                 199733804 85 + 202140232 T

a score=4911.000000
s hg38.chr3_KI270935v1_alt         84008 17 +    197351 CTCCTGCCCTAAGTCTC
s panTro4.chr3_GL389630_random     45090 17 +    103936 ctcctgccctaagtctc
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120822049 17 + 123690457 CTCCTGCCCTAAGTCTC
i nomLeu3.chr11                C 0 C 0
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371357  0 -  91754291 C
e macFas5.chr2                     22188 130 + 192460366 T
e papAnu2.chr2                     20329  0 - 187378091 C
e ponAbe2.chr3                 199733804 85 + 202140232 T

a score=3980.000000
s hg38.chr3_KI270935v1_alt         84025 11 +    197351 CTCCCTGACCT
s panTro4.chr3_GL389630_random     45107 11 +    103936 ctccctgacca
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120822066 11 + 123690457 CTCCCTGACCG
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     22058 11 + 192460366 CCTCCTAACTG
i macFas5.chr2                 T 130 C 0
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371357  0 -  91754291 C
e papAnu2.chr2                     20329  0 - 187378091 C
e ponAbe2.chr3                 199733804 85 + 202140232 T

a score=64057.000000
s hg38.chr3_KI270935v1_alt         84036 85 +    197351 GTCCTCCTGCCCTAACTCCTCCCTGACCAGTCCTCCTGCCCTAACTCCTCCCTGACCGGTCCTCCTGCCCTAACTCCTCCCTGAC
s panTro4.chr3_GL389630_random     45118 70 +    103936 gtcctcctgccctaactcctccctgaccggtcctcctgccctaactcctccctgactggtcctcctgccc---------------
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199733719 85 + 202140232 GTCCTCCTGCCCTAACTCCTCCCTGACTTGTCCTCCTGCCCTAACTCCTCCCTGACTGATCCTCCAGCCTTAACTCCTCCCTGAC
i ponAbe2.chr3                 T 85 T 86
s nomLeu3.chr11                120822077 85 + 123690457 GTCCCCCTGCCCTAACTCCTCCCTGACCGGTCCCCCTGCCCTAACTCCTCCCTGACCGGTCCCCCTGCCCTAACTCCTCCCTGAC
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     22069 85 + 192460366 GTCCCCCTGCCCTAACTCCTCCCCGACCGGTCCCCCTGCCCTAGCTCCTCCCCGACCGGTCCCCCTGCCCTAGCTCCTCCCGGAC
i macFas5.chr2                 C 0 C 0
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371357  0 -  91754291 C
e papAnu2.chr2                     20329  0 - 187378091 C

a score=643.000000
s hg38.chr3_KI270935v1_alt         84121 17 +    197351 GAATCCCCCTGCCCTAA
s panTro4.chr3_GL389630_random     45188  2 +    103936 ---------------AA
i panTro4.chr3_GL389630_random C 0 C 0
s macFas5.chr2                     22154 17 + 192460366 TGGTCCCCCTGCCCTAA
i macFas5.chr2                 C 0 T 113
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371357  0 -  91754291 C
e papAnu2.chr2                     20329  0 - 187378091 C
e ponAbe2.chr3                 199733804 86 + 202140232 T
e nomLeu3.chr11                120822162  0 + 123690457 C

a score=482.000000
s hg38.chr3_KI270935v1_alt         84138 5 +    197351 GTCTC
s panTro4.chr3_GL389630_random     45190 5 +    103936 GTCTC
i panTro4.chr3_GL389630_random C 0 C 0
e rheMac3.chr2                     12900 0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719 0 -  74750902 C
e chlSab2.chr15                   371357 0 -  91754291 C
e macFas5.chr2                     22171 113 + 192460366 T
e papAnu2.chr2                     20329 0 - 187378091 C
e ponAbe2.chr3                 199733804 86 + 202140232 T
e nomLeu3.chr11                120822162 0 + 123690457 C

a score=25773.000000
s hg38.chr3_KI270935v1_alt         84143 70 +    197351 CTCCCTGACCGGTCCTCCTGCCCTAA--CTCCTCCCTGACCGGTCCTCCTGCCCT-AACTCCTCCCTGACCAG
s panTro4.chr3_GL389630_random     45195 73 +    103936 CTCCCTGACCCGTCTTCCTGCCCTGAGTCTCCTCCCTGACCGGTCCTCCTACCCTTAACTCCTCCCTGACTGG
i panTro4.chr3_GL389630_random C 0 I 202
s nomLeu3.chr11                120822162 61 + 123690457 ---------CCAGCCCCCTGCCCTAA--CTCCTCCCTGACCCAGCCCCCTGCCCT-AACTCCTCCCTGACTGG
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     22058 70 + 192460366 CCTCCTAACTGGTCCCCCTGCCCTAA--CTCCTCCCCGACCGGTCCCCCTGCCCT-AGCTCCTCCCCGACCGG
i macFas5.chr2                 T 113 C 0
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371357  0 -  91754291 C
e papAnu2.chr2                     20329  0 - 187378091 C
e ponAbe2.chr3                 199733804 86 + 202140232 T

a score=7245.000000
s hg38.chr3_KI270935v1_alt         84213 19 +    197351 TCCTCCTGCCCTAAGTCTC
s panTro4.chr3_GL389630_random     45470 19 +    103936 tcctcctgccctaagtctc
i panTro4.chr3_GL389630_random I 202 C 0
s nomLeu3.chr11                120822223 18 + 123690457 -CCTCCTGCCCTAAGTCTC
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     22128 17 + 192460366 TCCCCCTGCCCTAGCTC--
i macFas5.chr2                 C 0 T 87
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371357  0 -  91754291 C
e papAnu2.chr2                     20329  0 - 187378091 C
e ponAbe2.chr3                 199733804 86 + 202140232 T

a score=4293.000000
s hg38.chr3_KI270935v1_alt         84232 10 +    197351 CTCCCTGACC
s panTro4.chr3_GL389630_random     45489 10 +    103936 ctccctgacc
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120822241 10 + 123690457 CTCCCTGACC
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     22058 10 + 192460366 CCTCCTAACT
i macFas5.chr2                 T 87 C 0
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371357  0 -  91754291 C
e papAnu2.chr2                     20329  0 - 187378091 C
e ponAbe2.chr3                 199733804 86 + 202140232 T

a score=3295.000000
s hg38.chr3_KI270935v1_alt         84242 3 +    197351 GGT
s panTro4.chr3_GL389630_random     45499 3 +    103936 tgt
i panTro4.chr3_GL389630_random C 0 T 234
s ponAbe2.chr3                 199733718 3 + 202140232 GGT
i ponAbe2.chr3                 T 86 C 0
s nomLeu3.chr11                120822251 3 + 123690457 GGT
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     22068 3 + 192460366 GGT
i macFas5.chr2                 C 0 C 0
s chlSab2.chr15                   371357 3 -  91754291 GGT
i chlSab2.chr15                C 0 C 0
e rheMac3.chr2                     12900 0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719 0 -  74750902 C
e papAnu2.chr2                     20329 0 - 187378091 C

a score=95648.000000
s hg38.chr3_KI270935v1_alt         84245 83 +    197351 CCTCCTGCCCTAACTCCTCCCTGACCGGTCCTCCTGCCCTAACTCCTCCCTGACCAATCCCCCTGCCCTAACTCCTCCCTGAC
s panTro4.chr3_GL389630_random     45268 83 +    103936 CCTCCTACCCTAACTCCTCTCTGACCAGTCCTCCTGCCCTGACTTCTCCCTGACCGATTTTCCTGCCCTAACTCCTCCCTGAC
i panTro4.chr3_GL389630_random T 234 C 0
s ponAbe2.chr3                 199733721 83 + 202140232 CCTCCTGCCCTAACTCCTCCCTGACTTGTCCTCCTGCCCTAACTCCTCCCTGACTGATCCTCCAGCCTTAACTCCTCCCTGAC
i ponAbe2.chr3                 C 0 T 76
s nomLeu3.chr11                120822254 83 + 123690457 CCCCCTGCCCTAACTCCTCCCTGACTGGTCCCCCTGCCCTAACTCCTCCCTGACTGGTCCTCCTACCCTAACTCATCCCTGAC
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     22071 83 + 192460366 CCCCCTGCCCTAACTCCTCCCCGACCGGTCCCCCTGCCCTAGCTCCTCCCCGACCGGTCCCCCTGCCCTAGCTCCTCCCGGAC
i macFas5.chr2                 C 0 C 0
s chlSab2.chr15                   371360 83 -  91754291 CCCCCTGCCCTAACTCCTCGCCGACCGGTCCCCCTGCCCTAACTCCTTGCTGACCACTCCCCCTGCCCTAACTCCTCGCTGAC
i chlSab2.chr15                C 0 C 0
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e papAnu2.chr2                     20329  0 - 187378091 C

a score=476.000000
s hg38.chr3_KI270935v1_alt         84328 1 +    197351 C
s panTro4.chr3_GL389630_random     45351 1 +    103936 C
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120822337 1 + 123690457 C
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     22154 1 + 192460366 T
i macFas5.chr2                 C 0 C 0
s chlSab2.chr15                   371443 1 -  91754291 C
i chlSab2.chr15                C 0 I 28
e rheMac3.chr2                     12900 0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719 0 -  74750902 C
e papAnu2.chr2                     20329 0 - 187378091 C
e ponAbe2.chr3                 199733804 76 + 202140232 T

a score=15783.000000
s hg38.chr3_KI270935v1_alt         84329 33 +    197351 AATCCCCCTGCCCTAACTCCTCCCTGACCGGTC
s panTro4.chr3_GL389630_random     45352 33 +    103936 AGTCCCCCTGCTCTAACTCCTCCCTGACCGATC
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120822338 33 + 123690457 CGGCCCCCTGCCCTAACTCCTCCCTGACCGGTC
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     22155 33 + 192460366 GGTCCCCCTGCCCTAACTCCTCCCTGACTGGCC
i macFas5.chr2                 C 0 T 34
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371444 28 -  91754291 I
e papAnu2.chr2                     20329  0 - 187378091 C
e ponAbe2.chr3                 199733804 76 + 202140232 T

a score=-545.000000
s hg38.chr3_KI270935v1_alt         84362 6 +    197351 CTCCTC
s panTro4.chr3_GL389630_random     45385 2 +    103936 CT----
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120822371 6 + 123690457 CCCCTG
i nomLeu3.chr11                C 0 C 0
e rheMac3.chr2                     12900 0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719 0 -  74750902 C
e chlSab2.chr15                   371444 28 -  91754291 I
e macFas5.chr2                     22188 34 + 192460366 T
e papAnu2.chr2                     20329 0 - 187378091 C
e ponAbe2.chr3                 199733804 76 + 202140232 T

a score=3507.000000
s hg38.chr3_KI270935v1_alt         84368 18 +    197351 CCCTAACTCCTCCCTGAC
s panTro4.chr3_GL389630_random     45387  3 +    103936 --CTA-------------
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199733728 18 + 202140232 CCCTAACTCCTCCCTGAC
i ponAbe2.chr3                 T 76 C 0
s nomLeu3.chr11                120822377 18 + 123690457 CCCTAACTCCTCCCTGAC
i nomLeu3.chr11                C 0 C 0
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371444 28 -  91754291 I
e macFas5.chr2                     22188 34 + 192460366 T
e papAnu2.chr2                     20329  0 - 187378091 C

a score=23655.000000
s hg38.chr3_KI270935v1_alt         84386 34 +    197351 CTGTCCTCCTGCCCTAACTCCTCCCTGACCGGTC
s panTro4.chr3_GL389630_random     45390 24 +    103936 ----------GCCCTAACTCCTccctgaccggtc
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199733746 34 + 202140232 TTGTCCTCCTGCCCTAACTCCTCCCTGACTGATC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120822395 34 + 123690457 CCGGCCTCCTGCCCTAACTCCTCCCTGACTGGTC
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     22154 34 + 192460366 TGGTCCCCCTGCCCTAACTCCTCCCTGACTGGCC
i macFas5.chr2                 T 34 T 144
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371444 28 -  91754291 I
e papAnu2.chr2                     20329  0 - 187378091 C

a score=1361.000000
s hg38.chr3_KI270935v1_alt         84420 5 +    197351 CTCCA
s panTro4.chr3_GL389630_random     45414 5 +    103936 ctcct
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199733780 5 + 202140232 CTCCA
i ponAbe2.chr3                 C 0 T 29
s nomLeu3.chr11                120822429 5 + 123690457 GTCCT
i nomLeu3.chr11                C 0 C 0
e rheMac3.chr2                     12900 0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719 0 -  74750902 C
e chlSab2.chr15                   371444 28 -  91754291 I
e macFas5.chr2                     22188 144 + 192460366 T
e papAnu2.chr2                     20329 0 - 187378091 C

a score=10629.000000
s hg38.chr3_KI270935v1_alt         84425 19 +    197351 GCCCTAACTCCTCCCTGAC
s panTro4.chr3_GL389630_random     45419 19 +    103936 gccctaactcctccctgac
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199733756 19 + 202140232 GCCCTAACTCCTCCCTGAC
i ponAbe2.chr3                 T 29 C 0
s nomLeu3.chr11                120822434 19 + 123690457 ACCCTAACTCCTCCCTGAC
i nomLeu3.chr11                C 0 T 116
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371444 28 -  91754291 I
e macFas5.chr2                     22188 144 + 192460366 T
e papAnu2.chr2                     20329  0 - 187378091 C

a score=13169.000000
s hg38.chr3_KI270935v1_alt         84444 29 +    197351 CCGTCCTCCAGCCCTAACTCCTCCCTGAC
s panTro4.chr3_GL389630_random     45438 29 +    103936 ccgtcctcctgccctaactcctccctgac
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199733775 29 + 202140232 TGATCCTCCAGCCTTAACTCCTCCCTGAC
i ponAbe2.chr3                 C 0 T 19
s nomLeu3.chr11                120822337 29 + 123690457 CCGGCCCCCTGCCCTAACTCCTCCCTGAC
i nomLeu3.chr11                T 116 T 147
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371444 28 -  91754291 I
e macFas5.chr2                     22188 144 + 192460366 T
e papAnu2.chr2                     20329  0 - 187378091 C

a score=10673.000000
s hg38.chr3_KI270935v1_alt         84473 41 +    197351 CTGTCCTCCTGCCCTAAGTCTCCTCCCTGACCAGTCCTCCT
s panTro4.chr3_GL389630_random     45467 41 +    103936 ctgtcctcctgccctaagtctcctccctgacctgtcctcct
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120822219 41 + 123690457 CTGGCCTCCTGCCCTAAGTCTCCTCCCTGACCGGTCCCCCT
i nomLeu3.chr11                T 147 C 0
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371444 28 -  91754291 I
e macFas5.chr2                     22188 144 + 192460366 T
e papAnu2.chr2                     20329  0 - 187378091 C
e ponAbe2.chr3                 199733804 19 + 202140232 T

a score=6646.000000
s hg38.chr3_KI270935v1_alt         84514 25 +    197351 GCCCTAAGT--CTCCTCCCTGACCGGT
s panTro4.chr3_GL389630_random     45508 23 +    103936 gccctaa----ctcctccctgaccagt
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120822260 23 + 123690457 GCCCTAA----CTCCTCCCTGACTGGT
i nomLeu3.chr11                C 0 T 75
s macFas5.chr2                     22044 27 + 192460366 GTCCTGGGTCACGGCCTCCTAACTGGT
i macFas5.chr2                 T 144 C 0
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371444 28 -  91754291 I
e papAnu2.chr2                     20329  0 - 187378091 C
e ponAbe2.chr3                 199733804 19 + 202140232 T

a score=9430.000000
s hg38.chr3_KI270935v1_alt         84539 44 +    197351 CCTCCTGCCCTAAGTCTCCTCCCTGACCGGTCCTCCTGCCCTAA
s panTro4.chr3_GL389630_random     45531 42 +    103936 ccccctgccctaa--ctcctccctgacctgtcctcctgccGTAA
i panTro4.chr3_GL389630_random C 0 C 0
s macFas5.chr2                     22071 42 + 192460366 CCCCCTGCCCTAA--CTCCTCCCCGACCGGTCCCCCTGCCCTAG
i macFas5.chr2                 C 0 T 55
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371444 28 -  91754291 I
e papAnu2.chr2                     20329  0 - 187378091 C
e ponAbe2.chr3                 199733804 19 + 202140232 T
e nomLeu3.chr11                120822283 75 + 123690457 T

a score=231.000000
s hg38.chr3_KI270935v1_alt         84583 5 +    197351 GTCTC
s panTro4.chr3_GL389630_random     45573 3 +    103936 --CTC
i panTro4.chr3_GL389630_random C 0 C 0
e rheMac3.chr2                     12900 0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719 0 -  74750902 C
e chlSab2.chr15                   371444 28 -  91754291 I
e macFas5.chr2                     22113 55 + 192460366 T
e papAnu2.chr2                     20329 0 - 187378091 C
e ponAbe2.chr3                 199733804 19 + 202140232 T
e nomLeu3.chr11                120822283 75 + 123690457 T

a score=26790.000000
s hg38.chr3_KI270935v1_alt         84588 144 +    197351 CTCCCTGACCAGTCCTCCTGCCCTAACTCCTCCCTGACCGGTCCTCCAGCCCTAACTCCTCCCTGACCGGTCCTCCTGCCCTAAGTCTCCTCCCTGACCCGTCCTCCAGCCCTAACTCCTCCCTGACCGGTCCTCCTGCCCTAA
s panTro4.chr3_GL389630_random     45576 142 +    103936 CTCCCTGACCAATCCCCATGCCCTAACTCCTccctgacctgtcctcctgccctaactcctccctgaccggtccccctgccctaa--ctcctccctgaccagtcctctagccctaactcctccctgactggtcctcctgccctaa
i panTro4.chr3_GL389630_random C 0 C 0
s macFas5.chr2                     22058 113 + 192460366 CCTCCTAACTGGTCCCCCTGCCCTAACTCCTCCCCGACCGGTCCCCCTGCCCTAGCTCCTCCCCGACCGGTCCCCCTGCCCTAG-------------------------------CTCCTCCCGGACTGGTCCCCCTGCCCTAA
i macFas5.chr2                 T 55 T 29
e rheMac3.chr2                     12900   0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719   0 -  74750902 C
e chlSab2.chr15                   371444  28 -  91754291 I
e papAnu2.chr2                     20329   0 - 187378091 C
e ponAbe2.chr3                 199733804  19 + 202140232 T
e nomLeu3.chr11                120822283  75 + 123690457 T

a score=191.000000
s hg38.chr3_KI270935v1_alt         84732 2 +    197351 GT
s panTro4.chr3_GL389630_random     45718 2 +    103936 gt
i panTro4.chr3_GL389630_random C 0 C 0
e rheMac3.chr2                     12900 0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719 0 -  74750902 C
e chlSab2.chr15                   371444 28 -  91754291 I
e macFas5.chr2                     22171 29 + 192460366 T
e papAnu2.chr2                     20329 0 - 187378091 C
e ponAbe2.chr3                 199733804 19 + 202140232 T
e nomLeu3.chr11                120822283 75 + 123690457 T

a score=14296.000000
s hg38.chr3_KI270935v1_alt         84734 75 +    197351 CTCCTCCCTGACCGGTCCTCCTGCCCTAAGTCTCCTCCCTGACCGGTCCTCCTGCCCTAAGTCTCCTCCCTGACC
s panTro4.chr3_GL389630_random     45720 75 +    103936 ctcctccctgacctgtcctcctgccctgagtctcctccctgacctgtcctcctgccctgAGTCTCCTCCCTGACC
i panTro4.chr3_GL389630_random C 0 T 31
s nomLeu3.chr11                120822208 59 + 123690457 CTCCTCCCTGACTGG-CCTCCTGCCCTAAGTCTCCTCCCTGACCGGTCCCCCTGCCCTAA---------------
i nomLeu3.chr11                T 75 C 0
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371444 28 -  91754291 I
e macFas5.chr2                     22171 29 + 192460366 T
e papAnu2.chr2                     20329  0 - 187378091 C
e ponAbe2.chr3                 199733804 19 + 202140232 T

a score=2717.000000
s hg38.chr3_KI270935v1_alt         84809 27 +    197351 AGTACTCCTGCCCTAAGTCTCCTCCCT
s panTro4.chr3_GL389630_random     45764 27 +    103936 tgtcctcctgccctgAGTCTCCTCCCT
i panTro4.chr3_GL389630_random T 31 C 0
s nomLeu3.chr11                120822267  9 + 123690457 ------------------CTCCTCCCT
i nomLeu3.chr11                C 0 C 0
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371444 28 -  91754291 I
e macFas5.chr2                     22171 29 + 192460366 T
e papAnu2.chr2                     20329  0 - 187378091 C
e ponAbe2.chr3                 199733804 19 + 202140232 T

a score=15899.000000
s hg38.chr3_KI270935v1_alt         84836 35 +    197351 GACCGGTCCTCCTGCCCTAAGTCTCCTCCCTGACT
s panTro4.chr3_GL389630_random     45791 35 +    103936 GACCGGTCCTCCTGCCCTAAGTCTCCTCCCTGACC
i panTro4.chr3_GL389630_random C 0 T 31
s nomLeu3.chr11                120822276 33 + 123690457 GACTGGTCCCCCTGCCCTAA--CTCCTCCCTGACT
i nomLeu3.chr11                C 0 C 0
s papAnu2.chr2                     20329 33 - 187378091 gaccggtccccctgccctaa--ctcctccccgact
i papAnu2.chr2                 C 0 C 0
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371444 28 -  91754291 I
e macFas5.chr2                     22171 29 + 192460366 T
e ponAbe2.chr3                 199733804 19 + 202140232 T

a score=6248.000000
s hg38.chr3_KI270935v1_alt         84871 18 +    197351 GGTCCTCCTGCCCTAAGT
s panTro4.chr3_GL389630_random     45795 18 +    103936 GGTCCTCCTGCCCTAAGT
i panTro4.chr3_GL389630_random T 31 C 0
s nomLeu3.chr11                120822309 17 + 123690457 GGTCCTCCTACCCTAAC-
i nomLeu3.chr11                C 0 I 8191
s papAnu2.chr2                     20362 16 - 187378091 ggtccccctgccctaa--
i papAnu2.chr2                 C 0 C 0
e rheMac3.chr2                     12900  0 - 192599291 C
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371444 28 -  91754291 I
e macFas5.chr2                     22171 29 + 192460366 T
e ponAbe2.chr3                 199733804 19 + 202140232 T

a score=7031.000000
s hg38.chr3_KI270935v1_alt         84889 10 +    197351 CTCCTCCCTG
s panTro4.chr3_GL389630_random     45813 10 +    103936 CTCCTCCCTG
i panTro4.chr3_GL389630_random C 0 C 0
s rheMac3.chr2                     12900 10 - 192599291 ctcctccctg
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     22142 10 + 192460366 CTCCTCCCGG
i macFas5.chr2                 T 29 C 0
s papAnu2.chr2                     20378  9 - 187378091 ctcctccc-g
i papAnu2.chr2                 C 0 C 0
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881719  0 -  74750902 C
e chlSab2.chr15                   371444 28 -  91754291 I
e ponAbe2.chr3                 199733804 19 + 202140232 T
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=12997.000000
s hg38.chr3_KI270935v1_alt         84899 12 +    197351 ACTGGTCCTCCT
s panTro4.chr3_GL389630_random     45823 12 +    103936 ACCGGTCCTCCT
i panTro4.chr3_GL389630_random C 0 C 0
s rheMac3.chr2                     12910 12 - 192599291 actggtccccct
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     22152 12 + 192460366 ACTGGTCCCCCT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     20387 12 - 187378091 accggtccccct
i papAnu2.chr2                 C 0 C 0
s calJac3.chr17                   881719 12 -  74750902 CCTGGTCCTCTC
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e chlSab2.chr15                   371444 28 -  91754291 I
e ponAbe2.chr3                 199733804 19 + 202140232 T
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=75204.000000
s hg38.chr3_KI270935v1_alt         84911 76 +    197351 GCCCTAACTCCTCCCTGACTGGCCTCCATCCAAGCAGAGCTTGAGTATTGCTGGTTCCCTGCTCAAACCCACCACT
s panTro4.chr3_GL389630_random     45835 76 +    103936 GCCCTAACTCCTCCCTGACTGGCCTCCATCCTAGCAGAGCTTGAGTATTGCTGGTTCCCTGCTCAAACCCACCACT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199733785 76 + 202140232 GCCTTAACTCCTCCCTGACTGGCCTCCGTCCAAGCAGAGCTTGAGGATTGCTGGTTCCCTACTCAAACCCACCACT
i ponAbe2.chr3                 T 19 C 0
s rheMac3.chr2                     12922 48 - 192599291 gccctaactcctccctgactggcctctgtccaagcagagcttgagtat----------------------------
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     22164 48 + 192460366 GCCCTAACTCCTCCCTGACTGGCCTCTGTCCAAGCAGAGCTTGAGTAT----------------------------
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     20399 48 - 187378091 gccctaactcctccctgACTGGCCTCTGTCCAAGTGGAGCTTGAGTAT----------------------------
i papAnu2.chr2                 C 0 C 0
s calJac3.chr17                   881731 48 -  74750902 GCCCTAACTCTTCCCTTGCTGGCCTCCGCCCAAGCAGAGCTCTGGTAC----------------------------
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65403054 1021 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e chlSab2.chr15                   371444 28 -  91754291 I
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=1380.000000
s hg38.chr3_KI270935v1_alt         84987 3 +    197351 GGT
s panTro4.chr3_GL389630_random     45911 3 +    103936 GGT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199733861 3 + 202140232 GGT
i ponAbe2.chr3                 C 0 C 0
s mm10.chr16                    65404075 3 -  98207768 GGC
i mm10.chr16                   I 1021 C 0
e rheMac3.chr2                     12970 0 - 192599291 C
e canFam3.chr33                 29038935 2307 +  31377067 I
e calJac3.chr17                   881779 0 -  74750902 C
e chlSab2.chr15                   371444 28 -  91754291 I
e macFas5.chr2                     22212 0 + 192460366 C
e papAnu2.chr2                     20447 0 - 187378091 C
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=1575895.000000
s hg38.chr3_KI270935v1_alt         84990 665 +    197351 TGCTGGttccctgctcaaacccaccactggcactggcttcccatcacatacagaataaaggctaaatgtctgtgcttggcacagaaagtcatcaaca-ggccccagagcacgtttctggtgttatcttctgctaatgccctgc----cctcactcctatgctgcagcTGAATGGAACGAGCCATTATCC---------CCTCAG-------------------GAACGCTGGCTTCTCAGTAAACGATTATAGCCCAGAAGCTCTGTCATCACAGAACCTAGCTATTGGCTAATGGGTCAGCTTTGGCTTCATTTCTCTGAAtaatttatttcaaaacataatcccaaggaacaaggttaggaaaaggggagggt-g-----acagggacagagggagagcctatgcaaagacgtgttatccagttggcccctgctgtggctggctggttgctcaatcctgtaagatcttctaagaagctttatgagatgtag-tgagaaccacctgtcctggggatgagtctgtctgtcggcttccattcctcatgggttatgagttgctccacaggATTCTGGATGTATAcagat--------gctcttcatcttaggaaggggttacgtcccaataaacacgtggtaagtcaaaaatactgtaagtcagaaacacatttaataccctgataagcccatcataaagtc-aaacaattttaaa
s panTro4.chr3_GL389630_random     45914 665 +    103936 TGCTGGttccctgctcaaacccaccactggcactggcttcccatcacctacagaataaaggctaaatatctacgcttggcatagaaagtcataaaca-ggccccagagcacgtttctggtgttatcttctgctaatgccctgc----cctcactcctatgctgcagcTGAATGGAACGAGCCATTATCC---------CCTCGG-------------------GAACGCTGGCTTCTCAGTAAACGATTATAGCCCAGAAGCCCTGTCATCACAGAACCTAGCTATTGGCTAATGGGTCAGCTTTAGCTTCATTTCTCTGAAtaacttatttcaaaacataatcccaaggaacaaggttaggaaaaggggagggt-g-----acagggacagagggagagcctgtgcaaagacatgttatccagtcggcccctgctgtggctggctggttgcacgatcctgtaagatcttctaagaagctttctgagatgtag-tgagaaccacctgtcctggggatgagtctgtctgtcggctcccattcctcatgggttatgagttgctccacaggATTCTGGATGTATAcagat--------gttcttcatcttaggaagggtttacgtcccaataaacacgtggtaagtcaaaaatactgtaagtcagaaacacatttaataccctgataagcccatcgtaaagtc-aaacaattttaaa
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199733864 665 + 202140232 TGCTGGTTCCCTGCTCAAACCCACCACTGGCACTGGCTTCCCATCATCTACAGAATAAAGGCTAAATGCCTACGCTTGGCACAGAAAGTCATCAACA-GGCCCCAGGGCACATTTCTAGTGTTATCTTCTGCTAATGCCCTGC----ACCCACTCCTATGCTGCAGCTAAATGGAATGAGCCATTATCC---------CCTCGG-------------------GAACACTGGCTTCTCAGTAAATGATTATAGCCCAGAAGCCCTGTCATCACAGAACCCAGCTATTGGCTAATTGGTCAGCTTTAGCTTCATTTCTCTGAACaatttatttcaaaacataatcccaaggaacaaggttaggaaaaggggaggggag-----acagggacagagggagagcccgtgcaaagatgtgttatccattcagcccctgctgtggctggctggttgaccgatcctgtaagatcttctaagaagcTTTATGAGATGTAG-TGAGAACCATCTGTCCTGGGG-TGAGTCTGTCTGTCGCCTCCCATTCCTCATGGGTTATGAGTTGCTCCACAGGATTCTGGATGTATAcagat--------gttcctcatcttaggaaggggttacatcccaataaacatgtggtaagtcaaaaatactgtaagtcagaaacacatttaataccctgataagcccatcataaagtc-aaaaacttttaag
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                     12970 662 - 192599291 tgctagttccctgctcaaacccaccactggcactggcttcccatcacctacagaataaaggctaaatgcctacacttggcacagaaagtcatcaaca-ggccccagtgcccatttctggccttatcttctgctaatgccctgc----acccactccCATGCGGTAGCTGAATGGAAAGAGCCATTATCC---------CCTCGG-------------------GAACACTGGCTTCTCTGTAAATGATTATAGCCCGGAAACCCTGTCAGCACAGAACCCAGCTATTGGCTAATTGGTCAGCTTTAGCTTCATTTCTCTGAAtaatttatttcaaaacataatcccaaggaacaaggttaggaaaaggggaggggag-----acaggaacagagggagagcccgtgcaaagccgtgttatccagtcggcccctgctgtggctgactggttgtgcgatcctgtaagatcttctaagaagctttatgagatgtat-tgagaaccatctgtcctggggatgaa----tctgtcggctcccagtcctcatgggttacgagttgctccacaggATTCTGGATATATACGAat--------gttcctcatctgaggaaggggttacgtcccaataaacacttggtaagtcaaaaatactgtaagtcagaaacacatttaataccctgataagcccatcataaagtc-aaaaaattttaag
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     22212 662 + 192460366 tgctagttccctgctcaaacccaccactggcactggcttcccatcacctacagaataaaggctaaatgcctacacttggcacagaaagtcatcaaca-ggccccagtgcccatttctggccttatcttctgctaatgccctgc----acccactccCATGCGGTAGCTGAATGGAAAGAGCCATTATCC---------CCTCGG-------------------GAACACTGGCTTCTCTGTAAATGATTATAGCCCGGAAACCCTGTCAGCACAGAACCCAGCTATTGGCTAATTGGTCAGCTTTAGCTTCATTTCTCTGAAtaatttatttcaaaacataatcccaaggaacaaggttaggaaaaggggaggggag-----acagggacagagggagagcccgtgcaaagccgtgttatccagtcggcccctgctgtggctgactggttgtgcgatcctgtaagatcttctaagaagcTTTATGAGATGTAT-TGAGAACCATCTGTCCTGGGGATGAA----TCTGTCAGCTCCCAGTCCTCATGGGTTACGAGTTGCTCCACAGGATTCTGGATATATACGAat--------gttcctcatctgaggaaggggttacgtcccaataaacacttggtaagtcaaaaatactgtaagtcagaaacacatttaatacCCTGATAAGCCCATCATAAAGTC-AAAAAATTTTAAG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     20447 666 - 187378091 TGCTAGTTCCCTGCTCAAACCCACCACTGGCACTGGCTTCCCATCACCTACAGAATAAAGGCTAAATGCCTACACTTGGCACAGAAAGTCATCAACA-GGCCCCAGTGCCCATTTCTGGCCTTATCTTCTGCTAATGCCCTGC----ACCCACTCCCATGCGGTAGCCGAATGGAAAGAGCCATTATCC---------CCTCGG-------------------GAACACGGGCTTCTCCGTAAATGATTATAGCCCGGAAACCCTGTCGGCACAGAACCCAGCTATTGGCTAATTGGTCAGCTTTAGCTTCATTTCTCTGAATAATTTGTTTCAAAACATAATCCCAAGGAATAAGGTTaggaaaaggggaggggag-----acagggacagagggagagCCCGTGCAAAGCCGTGTTATCCAGTCGGCCCCTGCTGTGGCTGACTGGTTGTGCGATCCTATAAGATCTTCTAAGAAGCTTTATGAGATGTAT-TGAGAACCATCTGTCCTGGGGATGAATCTGTCTGTCGGCTCCCAGTCCTCATGGGTTATGAGTTGCTCCACAGGATTCTGGATATATACAGAT--------GTTCCTCATCTGAGGAAGGGGTTACGCCCCAATAAACACTTGGTAAGTCAAAAATACTGTAAGTCAGAAACACATTTAATACCCTGATAAgcccatcataaagtc-aaaaaattttaag
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   371472 660 -  91754291 tgctagtttcctgctcaaacccaccactggcactggcttcccatcacctacagaataaaggctaaatgcctacacttggcacagaaagtcatcaaca-ggccccagtgcccatttctggccttatcatctgctaatgccccgc----acccactccTATGCGGTAGGCGAATGGAAAGAGCCGTTATCC---------CCTCGG-------------------GAACACCGGCTTCTCAGTAAATGATTATAGCCAG--AACCCTGTCGGCACAGAACCCAGCTATTGGCTAATTGGTCAGCTTTAGCTTCATTTCTCTGAAtaatttatttcaaaacataatcccaaggaacaaggttaggaaaaggggaggggag-----acagggacagagggagagcccgtgcaaagccgtgttatccagtcggcccctgctgtggctcactggttgtgcgatcctgtaagatcttctaagaagcTTTATGAGATGTAT-TGAGAACCATCTGTCCTGGGGATGAC----TCTGTCGGCTCCCAGTCCTCACGGGTTACGAGTTGCTCCACAGGATTCTGGATATATAcagat--------gttcctcatctgaggaaggggttacgtcccaataaacacttggtaagtcaaaaatactgtaagtcagaaacacatttaatacCCTGATAAGCCCATCATAAAGTC-AAAAAATTTTAAG
i chlSab2.chr15                I 28 C 0
s calJac3.chr17                   881779 657 -  74750902 TGCTGGTTTCCTGCTCAAACCCACCACTGGAACTGGCTTCCCATCATCTACAGAAGAAAGGCTGAACGCCTACGCTTGGCGC----AGTCCCCAACAGggccccagtgcacatttctggtcttatctcctgctaatcccctgccccacccccttcctatgctgcagctgaatggaatga-ccattttcc---------ccaaaG-------------------GAACGCTGGTTTCTCAGTAAATGTTTATAGCACAGAAGCCCGGTCAGCGCAGGACGCAGCCATTGGCTAATGGGTCAGCTTTAGCTCCATTTCTCTGAAtaatttattttggaacataatctca--gagcaaggttaggaaaaggagagcaaggttagaacagggacagagggagagcccgtgcagagatgtgttatccagttggcccctgctctggctggctggttgcttgatcctgtacgatcttctaagaagctttctgagatgtatctgagaaccgtctgtcctgggaatgaa----tctgtcggctcccattcctcatgagttacgagttgctgcacaggATTCTGGATACATACAGATGTTCCTCGgttcctcgtcttaggaaggggttatgtcccgataaacaagtggtaagtcagaa------------------acatgtaagccTctgataagcccatcgtaaagtcaaaaaaattttaag
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65404078 588 -  98207768 AGCCAGCTCCCTGTTGAGA-----GGCCATCAATGGCTTCCCATTCTCGACAGACTAGATGTGAAAGTACTGGGTCTGGCCT-----GCCACCACCA-AGCTC---TGCAGACCTCCAGCTTTATC-CCTGCTAATCCCCCTC----ACCCACTCTTGGG-TGCAGCTGAACAGGATCCCCCATTCTCCTCACCCAAGCCTTGGTCTGGGCCTTTGCTAATCTGAACCCTTGTTTCTGGGCAACTGATTGCAGCAAGG-ATCCCTGTTGGCCCAGAGCCCAGCTCTTGGCTAATGGTTTTGTGTTGGCTTAATTTCTCTaaggaatttatttaggaacataactcca----atgggattagagtaaggcaaataa-a-----acagggatggagggagggccagcacaaagacctaccctccagtcggctctagctgtggctggctagttgcttcg-cctgtgggatcttctaagagaccttggggaatgtgtctgaaaGGCATCTAT-CTGGTAACAGATCAGTGTGCCTGTCTCCTTTCC-CATGGACTACAAGTTGGCCTACAGAGTCTTGGAAATAT----AT--------ATT--------------------------------------------------------------AAAAACATATGTAATAGAGTGAT------------------TAACAACTTTAAG
i mm10.chr16                   C 0 I 43
e canFam3.chr33                 29038935 2307 +  31377067 I
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=59263.000000
s hg38.chr3_KI270935v1_alt         85655 26 +    197351 tccaatcattgtaagccaggaccatc
s panTro4.chr3_GL389630_random     46579 26 +    103936 tccaatcattgtaagccgggaccatc
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199734529 26 + 202140232 tcaaatcactgtaagccgggaccatc
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                     13632 26 - 192599291 tcaaatcattgtaaaccgggaccgtc
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     22874 26 + 192460366 TCAAATCATTGTAAACCGGGACCGTC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     21113 26 - 187378091 tcaaatcATTGTAAACCGGGACCATC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   372132 26 -  91754291 TCAAATCATTGTAAACCGGGACCGTC
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   882436 26 -  74750902 tcaaatcattgtaagttgggaccatc
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65404666 43 -  98207768 I
e canFam3.chr33                 29038935 2307 +  31377067 I
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=185023.000000
s hg38.chr3_KI270935v1_alt         85681 65 +    197351 tgTATACCCaagacatacacaaggatgttcatagcagctttattcaaaatagtgaaaaac--aaaac
s panTro4.chr3_GL389630_random     46605 65 +    103936 tgTATACCCaagacatatacaaggatgttcatagcagctttattcaaaatagtgaaaaac--aaaac
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199734555 65 + 202140232 tgTATACCCaagacatatacaagaatgttcatagcagctttattcaaaatagtgaaaaac--aaaac
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                     13658 65 - 192599291 tgTATACCCaagacatatacaagaatgttcatagcagctttactcaaaatagtgaaaaac--aaaac
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     22900 65 + 192460366 TGTATACCCaagacatatacaagaatgttcatagcagctttattcaaaatagtgaaaaac--aaaac
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     21139 65 - 187378091 TGTATACCCAAGAcatatacaagaatgttcatagcagctttattcaaaatagtgaaaaac--aaaac
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   372158 65 -  91754291 TGTATACCCaagacatatataagaatgtccatagcagctttattcaaaatagtgaaagac--aaaac
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   882462 65 -  74750902 tgTACACccaagatacatgcaagaacgttcatagcagctttattcaaaatagtgaaaacc--aaaat
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29041242 67 +  31377067 tgtatacccaaagcgtatgcgagactattcctagcagctttctttcgaatagtgaaaaactggaaat
i canFam3.chr33                I 2307 C 0
e mm10.chr16                    65404666 43 -  98207768 I
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=346225.000000
s hg38.chr3_KI270935v1_alt         85746 134 +    197351 aatccaaatgcacagcaataggaaaacagacaaataaattgtggtata-tttatacagtggaatactatgcaacaacaaaaaaggatgaagca-taatactacac---acagcgtgagtgagtctc-acagacacagtgt
s panTro4.chr3_GL389630_random     46670 134 +    103936 aatccaaatgcacagcaattggaaaacagacaaataaattgtggtata-tttatacagtggaatactatgcgacaacaaaaaaggatgaagca-taatactacac---acagcgtgagtgagtctc-acagacacagtgt
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199734620 134 + 202140232 aatccaaatgctcagcaattggaaaatggacaaataaattgtggtata-tttatacaatggaataatatgcaacgacaaaaaaggatgaagca-taatactacac---acagcatgagtgagtctc-acagacacagtgt
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                     13723 133 - 192599291 aatccaaatgcccagcaattggaaaatgggtaaataaattgtggtata-tttatacaatggaatactgtgcaacaac-aaaaaggatgaagta-taacactacac---acagcgtgagtgagtctc-acagacacagtgt
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     22965 133 + 192460366 aatccaaatgcccagcaattggaaaatgggtaaataaattgtggtata-tttatacaatggaatactgtgcaacaac-aaaaaggatgaagta-taacactacac---acagcgtgagtgagtctc-acagacacagtgt
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     21204 133 - 187378091 aatccaaatgcccagCAATTGgaaaatgggtaaataaattgtggtata-tttatacaatgaaatactgtgCAACAAC-AAAAAGGATGAAGTA-TAACACTACAC---ACAGCGTGAGTGAGTCTC-ACAGACACAGTGT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   372223 129 -  91754291 aatccaaatgcccagcaattgcaaaatgg----ataaattgtggtata-tttatacaatggaatactgtgcaacaac-aaaaaggatgaagta-taacaccacac---acagtgtgagtgagtctc-acagacacagtgt
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   882527 131 -  74750902 aatccaaatgcccagcaataggaaaatggacaaataaattgtgttaca-tttatgcaatggaatactacccaaagacaaaaacagatgaagta-AAATACT-TAA---acatcatgat---gtttcaatagatacaatgt
i calJac3.chr17                C 0 I 1086
s mm10.chr16                    65404709 135 -  98207768 aacccaaacatccatcaataagaaaatggccacagaagttgtggttga-taattccaaaggaaaaccacccgccatc---taaggataaagcattattattatacgtaagagctctggtgaacctc-acagacagaatgt
i mm10.chr16                   I 43 C 0
s canFam3.chr33                 29041309 130 +  31377067 gatacaagtgtccatcaataggaacatggagaaataaattg---tatactttctacaatggaatagtatctaacagcaaacaagaatggag---tactgctacac---acaacacaggggagtttc-acaggcataatgt
i canFam3.chr33                C 0 C 0
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=200312.000000
s hg38.chr3_KI270935v1_alt         85880 95 +    197351 taacagagagaatccagacacaaaagagcctatctatgcatgattccatttatatgaagttcaaagacatgcagagctaatctatggtgatagag
s panTro4.chr3_GL389630_random     46804 95 +    103936 taacagagagaatccagacacaaaagagcctatctatgcatgattccatttatatgaagttcaaagacatgcagagctaatctatggtgatagag
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199734754 93 + 202140232 taac--agagaatccagacacaaaagagcctgtatatgcatgattccatttatatgaagttcaaagacatgcagagctaatctatggtgatagag
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                     13856 92 - 192599291 taacagagagaatccagacacaaaagagcctatatatgcatgattccatttacatgaagctcaaagacaggcagagctaatctatggtga---ag
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     23098 92 + 192460366 taacagagagaatccagacacaaaagagcctatatatgcatgattccatttacatgaagctcaaagacaggcagagctaatctatggtga---ag
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     21337 93 - 187378091 TAACAGAGAgaatccagacacaaaagagcCTATAtatgcatgattccatttacacgAAGTTCAAAGACAGGCAGAGCTAATCTATGGTGAT--CG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   372352 92 -  91754291 taacagagagaatccagacacaaaagagcctatatctgcatgattccatttacatgaagctcaaagacaggcagagctaatctatggtga---ag
i chlSab2.chr15                C 0 C 0
s mm10.chr16                    65404844 79 -  98207768 tacatgtaagaagccaaatactgaaaagc----gcacgcacaatcctattcacatagtcctgaatg------------tgtccatggtggcagaG
i mm10.chr16                   C 0 I 218
s canFam3.chr33                 29041439 93 +  31377067 taagaaaaagaagccagacacgaaagag--tatggaatcctaattccatttatatgaagttcagaaataggcagaactaacccatggtgatagag
i canFam3.chr33                C 0 C 0
e calJac3.chr17                   882658 1086 -  74750902 I
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=124397.000000
s hg38.chr3_KI270935v1_alt         85975 72 +    197351 ataagaatggtggttacActgaaatgggaggatcgctcaaacccgggaggcggaggctgcagtgaaccatga
s panTro4.chr3_GL389630_random     46899 72 +    103936 ataagaatggtggttacActgaaatgggaggatcgctcaaacccgggaggcggaggctgcagtgaagcatga
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199734847 72 + 202140232 ataagaatggtggttacActgaaatgggaggatcgctcgaacccaggaggtggaggctgcaatgaaccatga
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                     13948 72 - 192599291 ataagaatggtggttacAGtgaaatgggaggatcgctcgaacccgggaggcggaggctgcagtgaaccatga
i rheMac3.chr2                 C 0 I 963
s macFas5.chr2                     23190 72 + 192460366 ataagaatggtggttacAGtgaaatgggaggatcgctcgaacccgggaggcggaggctgcagtgaaccatga
i macFas5.chr2                 C 0 I 3
s papAnu2.chr2                     21430 72 - 187378091 GTAAAAATGGTGGTTAcactgaaatgggaggatcgctcgaacccgggaggcggaggctgcagtgaaccatga
i papAnu2.chr2                 C 0 I 3
s chlSab2.chr15                   372444 72 -  91754291 ataagaatggtggttacActgaaatgggaggatcgctcgaacccgggaggcggaggctgcagtgaaccgtga
i chlSab2.chr15                C 0 I 1966
s canFam3.chr33                 29041532 11 +  31377067 gcaagaatgat-------------------------------------------------------------
i canFam3.chr33                C 0 C 0
e mm10.chr16                    65404923 218 -  98207768 I
e calJac3.chr17                   882658 1086 -  74750902 I
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=8303.000000
s hg38.chr3_KI270935v1_alt         86047 19 +    197351 tgg---agctgcactccagctt
s panTro4.chr3_GL389630_random     46971 19 +    103936 tgg---agctgcactccagctt
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199734919 22 + 202140232 tggcaccactgcactccagctt
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr2                     23265 19 + 192460366 ---caccactgcactccagctt
i macFas5.chr2                 I 3 I 1142
s papAnu2.chr2                     21505 19 - 187378091 ---caccgctgcactccagctt
i papAnu2.chr2                 I 3 I 1148
s canFam3.chr33                 29041543  3 +  31377067 -------------------ttt
i canFam3.chr33                C 0 C 0
e rheMac3.chr2                     14020 963 - 192599291 I
e mm10.chr16                    65404923 218 -  98207768 I
e calJac3.chr17                   882658 1086 -  74750902 I
e chlSab2.chr15                   372516 1966 -  91754291 I
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=57000.000000
s hg38.chr3_KI270935v1_alt         86066 208 +    197351 tggagacagagcgagaccctgtctctaaaaaaaaaaaaaaaaTGATTGTTCCATTCTGTggtggcaagtgggggcttgactggaagggaacacaagggcacctgttgaggtgctgagcacgttctgtatcttgacctgagtgtcggatacatcctggggatacatacgtacataaaaattcatcagggtatacgctacttaagctggg
s panTro4.chr3_GL389630_random     46990 206 +    103936 tggagacagagcaagaccctgtctctaaaaaaaaaaaaaaa--gaTTGTTCCATTCTGTggtggcaagtgggggcttgactggaagggaacacaagggcacctgctgaggtgctgagcacattctgtatcttgacctgagtgtcggatacatcctggggatacatacgtacataaaaattcatcagggtatgagctacttaagctggg
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199734941 205 + 202140232 tggagacagagcgagaccctgtctctaaaaaaaaagaaaaaaagaTTGTTCCATTCTGTGGTCGCAAAtgggggcttgcctggaaggaaacacaagggcacc---tgaggtgctgagcacgttctgtatcttgccctgagtgttggatacatcgtggagacatgtacatacataaaaattcatcagggtatatgctacttaagctggg
i ponAbe2.chr3                 C 0 C 0
s canFam3.chr33                 29041546 137 +  31377067 --------------------------------------------------------tgggg--------gagagaatgactgg-agggaataggagggagcctattgagatacggaaagtgtcttctatct----ctgagtggtggctagctcctgggtatattcacgt--gtaaaaattcattaagttgtaggctacttaggattga
i canFam3.chr33                C 0 C 0
e rheMac3.chr2                     14020 963 - 192599291 I
e mm10.chr16                    65404923 218 -  98207768 I
e calJac3.chr17                   882658 1086 -  74750902 I
e chlSab2.chr15                   372516 1966 -  91754291 I
e macFas5.chr2                     23284 1142 + 192460366 I
e papAnu2.chr2                     21524 1148 - 187378091 I
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=99922.000000
s hg38.chr3_KI270935v1_alt         86274 154 +    197351 cgtagtttacagtatgtaggttacaacataaaaaaGAAGTGAATGAACCAAAGAATACTGGGCTCCCTGGCGTTTCCTCTTCTGCAACCCAAGGAAATAAGCCTCGGTGTGGAGAGGGCCTGTCCTCAGGGCCTGGCAGATGTAGGCGATTCTT
s panTro4.chr3_GL389630_random     47196 154 +    103936 cgtagtttacagtatgtaggttacaccataaaaaaGAAGCGAATGAACCAAAGAATACTGGGCTCCCTGGCGTTTCCTCTTCTGCAACCCAAGGAAATAAGCCTCGGTGTGGAGAGGGCCTGTCCTGAGGGCCTGGCAAATGTAGGCGATTCTT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199735146 154 + 202140232 catagtttacagtatgtaggttacaccataaaaaggaaGTGAATGAACCAAAGAATACTGGGCTCCCTGGCATTTCCTCTTCTGCAACCCAAGGAAATAAGCATCGGTGTGGAGAGGGCCTGTCCTCAGGGCCTGGCAAATGTAGGTGATTCTT
i ponAbe2.chr3                 C 0 C 0
s calJac3.chr17                   883744 154 -  74750902 catagtttatactatgtaggttacacataatgaaagaaGTGAGTGAGCCAAAGAATACTGGGCTCCCTGGTGCTTCCTCTTCTGCAACCGGAGGAAATAAGCCTCGGTGTGGAGAGCACCTGCTCTCGGGGCCTTGCAAATTTAGGTGAttctt
i calJac3.chr17                I 1086 I 4660
s canFam3.chr33                 29041683 154 +  31377067 tgtagtttgcagtgtgtgggttatgccctagtaaagagaTGAATGAACGAATGGACAGAGGGCTCCCTGGAGTTTCCTACACTATAGCCCAAGGACTACGGGTTAGGATTGGGGAAGGCCCATTCTCAGGTCCTTGCAAATTTAGATGATTCTC
i canFam3.chr33                C 0 C 0
e rheMac3.chr2                     14020 963 - 192599291 I
e mm10.chr16                    65404923 218 -  98207768 I
e chlSab2.chr15                   372516 1966 -  91754291 I
e macFas5.chr2                     23284 1142 + 192460366 I
e papAnu2.chr2                     21524 1148 - 187378091 I
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=14596.000000
s hg38.chr3_KI270935v1_alt         86428 41 +    197351 ACCACGTCTCCTTCGGTAAGCCCACCTGGCAAGT-TCTCATC
s panTro4.chr3_GL389630_random     47350 41 +    103936 ACCACGTCTCCTTCGGTAAGCCCGCCTGGCAAGT-TCTCATC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199735300 41 + 202140232 ACCATGTCTCCTTCGGTAAGCCCACCTGGCAAGT-TCTCATC
i ponAbe2.chr3                 C 0 C 0
s canFam3.chr33                 29041837 42 +  31377067 ACCACCTCTTCTGTGGTGACCCTGCATGTAAACCATCTCATT
i canFam3.chr33                C 0 C 0
e rheMac3.chr2                     14020 963 - 192599291 I
e mm10.chr16                    65404923 218 -  98207768 I
e calJac3.chr17                   883898 4660 -  74750902 I
e chlSab2.chr15                   372516 1966 -  91754291 I
e macFas5.chr2                     23284 1142 + 192460366 I
e papAnu2.chr2                     21524 1148 - 187378091 I
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=35794.000000
s hg38.chr3_KI270935v1_alt         86469 80 +    197351 CACATAATCTGTGCATGCTCAACATTTGAAACCAGTGGGGACCCATTCGGACCCCAAGAGTTGGTATTAGAGATCATTTT
s panTro4.chr3_GL389630_random     47391 80 +    103936 CACATAATCTGTGCATGCTTAACATTTGAAACCAGTGGGGACCCATTCGGACCCCAAGAGTTGGTATTAGAGATCATTTT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199735341 80 + 202140232 CGCATAATCTGTGCATGCTCAACATTTGAAACCAGTGGGGACCCATTCAGACTCCAAGCATTGGTATTAAAGATCATTTT
i ponAbe2.chr3                 C 0 C 0
s mm10.chr16                    65405141 80 -  98207768 CACACTGTCTGTGCTCACACAACATGCAGAACTTGTGGAATCCTCTCAGAACCCTGTCAGCTGGCATGAAGAGTTTCTTT
i mm10.chr16                   I 218 I 4922
s canFam3.chr33                 29041879 77 +  31377067 TAAACCATCTGCGCATACTCAACATTTTGAACTTGTAGGGCCATGTTCGGACCTCA-GAGTTGGTAT-AAAGATATTTT-
i canFam3.chr33                C 0 C 0
e rheMac3.chr2                     14020 963 - 192599291 I
e calJac3.chr17                   883898 4660 -  74750902 I
e chlSab2.chr15                   372516 1966 -  91754291 I
e macFas5.chr2                     23284 1142 + 192460366 I
e papAnu2.chr2                     21524 1148 - 187378091 I
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=5409.000000
s hg38.chr3_KI270935v1_alt         86549 11 +    197351 AAAGTGAAAAC
s panTro4.chr3_GL389630_random     47471 11 +    103936 AAAGTGAAAAC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199735421 11 + 202140232 AAAGTGAAAAC
i ponAbe2.chr3                 C 0 C 0
s canFam3.chr33                 29041956 11 +  31377067 AAAGTAGAAAC
i canFam3.chr33                C 0 I 5697
e rheMac3.chr2                     14020 963 - 192599291 I
e mm10.chr16                    65405221 4922 -  98207768 I
e calJac3.chr17                   883898 4660 -  74750902 I
e chlSab2.chr15                   372516 1966 -  91754291 I
e macFas5.chr2                     23284 1142 + 192460366 I
e papAnu2.chr2                     21524 1148 - 187378091 I
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=29722.000000
s hg38.chr3_KI270935v1_alt         86560 110 +    197351 Tggccaggcacgatggcttacacctgtaatcccagcactttgggaggctgaggtgggcggatcacatgaggtcaggagttcgagaccaacttggccaacatggtgaaacc
s panTro4.chr3_GL389630_random     47482 110 +    103936 Tggctaggcacgatggcttacacctgtaatcccagcactttgggaggctgaggtgggcggatcacatgaggtcaggagttcgagaccaacttggccaacatggtgaaacc
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199735432 110 + 202140232 Tggccaagcacgatggcttacacctgtaatccaagcactttgggaggctgaggtgggtggatcacatgaggtcaggaattcgagaccaacctggccaatatggtgaaacc
i ponAbe2.chr3                 C 0 C 0
e rheMac3.chr2                     14020 963 - 192599291 I
e mm10.chr16                    65405221 4922 -  98207768 I
e canFam3.chr33                 29041967 5697 +  31377067 I
e calJac3.chr17                   883898 4660 -  74750902 I
e chlSab2.chr15                   372516 1966 -  91754291 I
e macFas5.chr2                     23284 1142 + 192460366 I
e papAnu2.chr2                     21524 1148 - 187378091 I
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=1677.000000
s hg38.chr3_KI270935v1_alt         86670 4 +    197351 ctgt
s panTro4.chr3_GL389630_random     47592 4 +    103936 ctgt
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199735542 4 + 202140232 ctgt
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr2                     24426 4 + 192460366 ctgg
i macFas5.chr2                 I 1142 C 0
e rheMac3.chr2                     14020 963 - 192599291 I
e mm10.chr16                    65405221 4922 -  98207768 I
e canFam3.chr33                 29041967 5697 +  31377067 I
e calJac3.chr17                   883898 4660 -  74750902 I
e chlSab2.chr15                   372516 1966 -  91754291 I
e papAnu2.chr2                     21524 1148 - 187378091 I
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=637235.000000
s hg38.chr3_KI270935v1_alt         86674 565 +    197351 tgactcaggatgactcagattagagcaggtgactgggggtgactcaggatggagcaggtgatagaggctaggagggggttgtttactgaaactaggggcaaggagatgaagaaaacgaggaagttaaactttaaaatgaagagctgaacatactgatacattgattctttggagaggatctcagaactcattgtacttaacaATTTACAGGCTAAAACCTTTGAAGAAGAATTTATTATATCCTACAaacctgggaggca-------------------------------------------------------gaggttgcagtgagccaagattgggccatcgcactccagcctgggcaataagaatgaaactctgtctcaaaaaaaacaaaaGTTGGCCAGggctgggcgtggtggctcacacctgtaatcccagcactttgggaggctaaagcaggtggatcacctgaggtcagaagtacgagaccatcgtggctaatatggtgaaaccccatctctactcaaaatacgaaaaaagaaaaaa----aaa----attagccaagcacggtggtgcacgcctgttatcccagctgcttaggaagctgaggcaggagaattgcctg
s panTro4.chr3_GL389630_random     47596 562 +    103936 tgactcaggatgactcagattagagcaggtgactgggggtgactcaggatggagcaggtgatagaggctaggagggggttgtttactgaaactaggggcaaggagatgaagaaaacgaggaagttaaactttaaaatgaagagctgaacatactgatacattgactctttggagaggatctcagaac-cattgtacttaacaATTTACAGGCTAAAACCTTTGAAGAGGAATTTATTATATCCTACAaacctgggaggca-------------------------------------------------------gaggttgcagtgagccaagattgggccatcgcactccagcctgggcaataagaatgaaactctgtctcaaaaaaa-caaaaGTTGGCTAGggctgggcgtggtggctcacacctgtaatcccagcactttgggaggctaaagcaggtggatcacctgaggtcagaagtacgagaccatcctggctaatatggtgaaaccccatctctactaaaaatatgaaaaaagaaaaaa----aaa-----ttagccaagcacggtggtgcacgcctgttatcccagctgcttaggaagctgaggcaggagaatcgcctg
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199735546 568 + 202140232 tgactcaggatgactcagatcagagcaggtgaccgggggtgactcaggatggagcaggtgatagaggctaggagggggtggtttactgaaactaggggcaaggagatgaagaaaacgaggaagttaaactttaaaatgaagagctgaacatactgatacattgattctttggagaggatctcagaactcattgtacttaacaATTTACAGGCTAAAACCTTTGAAGAGGAATTTATTATATCCTACAaacctgggaggca-------------------------------------------------------gaggttgcagtgagccaagttcggtccattgcactccagcctgggcaacaagaatgaaactctgtctcaaaaaaa-caaaaGTTGGCTAGggccaggtgtggtggctcacacctgtaatcccagcactttgggaggctaaagcaggcggatcacctgaggtcagaagtacaggaccatcctggctaatatggtgaaaccccatctctactaaaaatacaaaaaaaaaaaaaa----aaaaaaaattagccaagcatggtggtgagcgcctgttatcccagcagctcaggaagctgaggcagcagaatcgcctg
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                     14983 555 - 192599291 tgactcaggatgactcaggtcagagcaggtgaccaggggtgactcaggatagagcaggagatagaggctaggagggggttgtttactgaaactaggggcaaggagatgaagaaaacgaggaagttaaactttaaaatgaagagctgaacgtactgacacac----tgtttggagaggatctcagaactcattgtacttaacaATTTACAGGCTAAAACCTTTGAAGAGGAATTTATTATATCCT----------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------------------------gcactccagtctgggcaacaagaatgaaactccatctcaaaaaaa-caaaaGTTGGCTAGAgccgggcgtggtggctcacacctataatctcagcactttgggaggctggggcaggtggatc------------gagtatgggaccatcctggctaatatggtgaaaccccgtctctactaaaaatacacacacaaaaaaat----ata-----ttagccaagcattgtggtgcgtgcctgttatcccag-agctcaggaagctgaggcaggagaattgcttg
i rheMac3.chr2                 I 963 I 1
s macFas5.chr2                     24430 546 + 192460366 tgactcaggatgactcaggtcagagcaggtgaccaggggtgactcaggatggagcaggagatagaggctaggagggggttgtttactgaaactaggggcaaggagatgaagaaaacgaggaagttaaactttaaaatgaagagctgaacgtactgacacac----tgtttggagaggatctcagaactcattgtacttaacaATTTACAGGCTAAAACCTTTGAAGAGGAATTTATTATATCCTACAaacccaggaggtg-------------------------------------------------------gaggttgcagtgagccaagattgtgccattgcactccagtctgggcaacaagaatgaaactccatctcaaaaaaa-caaaaGTTGGCTAGAgccgggcgtggtggctcacacctataatcttagcactttgggaggctggggcaggtggatc------------gagtatgggaccatcctggctaatatggtgaaaccccgtctctactaaaaatacacacacaaaaaaat----ata-----ttagccaagcatggtggtgcgtgcctgttatcccag-agctcaggaagctgaggcaggagaattgcttg
i macFas5.chr2                 C 0 I 1
s chlSab2.chr15                   374482 553 -  91754291 tgactcaggatgactcaggtcagagcaggtgacc-ggggtgactcaggatggagcaggagatagaggctaggagggggttgtttactgaaactaggggcaaggagatgaagaaaacgaggaagttaaactttaaaatgaagagctgaacgtactgacacactgattgtttggagaagatctcagaactcattgtacttaacaATTTACAGGCTAAAACCTTTGAAGAGGAATTTATTATATCCTAAAaacccaggaggtg-------------------------------------------------------gaggttgcagtgagccaagatcgtgccattgcactccagtctgggcaacaagaatgaaactgcatctcaaagaaa-caaaaGTTGGCTAGAgccaggcatggaggctgacacccataatctcagcactttgggaggctggggcaggtggatc------------gagtatgggaccatcctggctaatatggtgaaaccccgtctctactaaaaatacaaaaaataaaaaataaaaaaa-----ttaaccaagcatggtggtgcgtgcctgttatcccag-agctcaggaagctgaggcaggagaatcgcttg
i chlSab2.chr15                I 1966 I 1
e mm10.chr16                    65405221 4922 -  98207768 I
e canFam3.chr33                 29041967 5697 +  31377067 I
e calJac3.chr17                   883898 4660 -  74750902 I
e papAnu2.chr2                     21524 1148 - 187378091 I
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=125099.000000
s hg38.chr3_KI270935v1_alt         87239  90 +    197351 atcccagaggcagaggttgcagtgaactgggattgtgccactgcactccagcctaggcgac-agagcaagattctgtctc----------------------------------------------------------------aaaaataaata
s panTro4.chr3_GL389630_random     48158  90 +    103936 atcccagaggcagaggttgcagtgaactgggattgcgccactgcactccagcctaggcgac-agagcaagattctgtctc----------------------------------------------------------------aaaaataaata
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199736114  90 + 202140232 atcccagaggcagaggttgcagtgaactgggattgtgccactacactccagcctaggcaac-agagcaagactctgtctc----------------------------------------------------------------aaaaataaata
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                     15539 154 - 192599291 atcccagaggcagagactgcagtgaactgggattgtgccactgcactccagcctgggtgac-ggagcaagactctgtctcataaataaataaataaataaataaataaataaataaataaataaataaataaataaataaataaataaataaata
i rheMac3.chr2                 I 1 I 12
s macFas5.chr2                     24977  90 + 192460366 atcccagaggcagagactgcagtgaactgggattgtgccactgcactccagcctgggtgac-ggagcaagactctgtctc----------------------------------------------------------------ataaataaata
i macFas5.chr2                 I 1 I 12
s papAnu2.chr2                     22672  91 - 187378091 acccaggaggtggaggttgcagtgagccaagatcgtgccattgcactccagtctgggcaacaagaatgaaactccatctc--------------------------------------------------------------aaaaaaacaaa--
i papAnu2.chr2                 I 1148 I 90
s chlSab2.chr15                   375036 110 -  91754291 atcctagaggcagagactgcagtgaactgggattgtgctgctgcactccagcctgggtgac-agagcaagactctgtctc--------------------------------------------ataaataaataaataaataaataaataaata
i chlSab2.chr15                I 1 C 0
e mm10.chr16                    65405221 4922 -  98207768 I
e canFam3.chr33                 29041967 5697 +  31377067 I
e calJac3.chr17                   883898 4660 -  74750902 I
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=11050.000000
s hg38.chr3_KI270935v1_alt         87329 12 +    197351 cata---aataaagt
s panTro4.chr3_GL389630_random     48248 12 +    103936 cata---aataaagt
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199736204 12 + 202140232 cata---aataaagt
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                     15705 15 - 192599291 aataaataataaagt
i rheMac3.chr2                 I 12 C 0
s macFas5.chr2                     25079 15 + 192460366 aataaataataaagt
i macFas5.chr2                 I 12 C 0
s chlSab2.chr15                   375146 12 -  91754291 aata---aataaagt
i chlSab2.chr15                C 0 C 0
e mm10.chr16                    65405221 4922 -  98207768 I
e canFam3.chr33                 29041967 5697 +  31377067 I
e calJac3.chr17                   883898 4660 -  74750902 I
e papAnu2.chr2                     22763 90 - 187378091 I
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=106224.000000
s hg38.chr3_KI270935v1_alt         87341 58 +    197351 tttagagcaggaatgaaaggaagtaaagtacacttggaagagctgtgttggcaactgg
s panTro4.chr3_GL389630_random     48260 58 +    103936 tttagaacaggaatgaaaggaagtaaagtacacttggaagagccgtgttggcaactgg
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199736216 58 + 202140232 tttagagcaggaatgaaaggaagtaaagtacacttggaagagccgtgttggccactgg
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                     15720 58 - 192599291 tttagagcaggaatgaaaggaagtaaagtacacttggaagagccacgtgggcaactgg
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     25094 58 + 192460366 tttagagcaggaatgaaaggaagtaaagtacacttggaagagccacgtgggcaactgg
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     22853 58 - 187378091 tttAGAGCAGGattgaaaggaagtaaagtacacttggaagagccACGTGGGCAACTGG
i papAnu2.chr2                 I 90 C 0
s chlSab2.chr15                   375158 58 -  91754291 tttagagcaggaatgaaaggaagtaaagtacacttggaagagccacgtgggcaactgg
i chlSab2.chr15                C 0 C 0
e mm10.chr16                    65405221 4922 -  98207768 I
e canFam3.chr33                 29041967 5697 +  31377067 I
e calJac3.chr17                   883898 4660 -  74750902 I
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=208184.000000
s hg38.chr3_KI270935v1_alt         87399 88 +    197351 agagatccgagtgcctcatctgacccttgacttgggattaatacattggcatgAGATGTGAGCAGTGACTCAAAGTTGCTCAGAAAAA
s panTro4.chr3_GL389630_random     48318 88 +    103936 agagatccgagtgcctcatctgacccttgacttgggattaatacattggcatgAGATGTGAGCAGTGACTCGAAGTTGCTCAGAAAAA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199736274 88 + 202140232 agagatccgagtgccccatctgacccttgacttgggattaatacattggcatgAGATGTGAGCAGTGACTCGAAGTTGCTCAGAAAAA
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                     15778 88 - 192599291 agagatccaggtgccccatctgacccttgacttgggattaatatattggcatgAGATGTGAGCAGTGACTCGAAGTTGCTCCGAAAAA
i rheMac3.chr2                 C 0 I 21
s macFas5.chr2                     25152 88 + 192460366 agagatccaggtgccccatctgacccttgacttgggattaatatattggcatgAGATGTGAGCAGTGACTCGAAGTTGCTCCGAAAAA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     22911 88 - 187378091 AGAGATCCAGGTGCCCCATCTGACCCTTGACTTGGGATTAATATATTGGCATGAGATGTGAGCAGTGACTCGAAGTTGCTCCGAAAAA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   375216 88 -  91754291 agagatccaggtgccccatctgacccttgacttgggattaatacattggcatgAGATGTGAGCAGTGACTCGAAGTTGCTCCGAAAAA
i chlSab2.chr15                C 0 I 21
s calJac3.chr17                   888558 88 -  74750902 agagacccaagcgccccatctgacccttgattggggttttatgtatcagcatgAGATCTGAGCAATGACTCAAAGTTGCTCAGAGGAA
i calJac3.chr17                I 4660 C 0
e mm10.chr16                    65405221 4922 -  98207768 I
e canFam3.chr33                 29041967 5697 +  31377067 I
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=1607.000000
s hg38.chr3_KI270935v1_alt         87487 5 +    197351 -AATCT
s panTro4.chr3_GL389630_random     48406 5 +    103936 -AATCT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199736362 5 + 202140232 -AATCT
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr2                     25240 5 + 192460366 -CGTCT
i macFas5.chr2                 C 0 I 6
s papAnu2.chr2                     22999 5 - 187378091 -CGTCT
i papAnu2.chr2                 C 0 C 0
s calJac3.chr17                   888646 5 -  74750902 AAATC-
i calJac3.chr17                C 0 C 0
e rheMac3.chr2                     15866 21 - 192599291 I
e mm10.chr16                    65405221 4922 -  98207768 I
e canFam3.chr33                 29041967 5697 +  31377067 I
e chlSab2.chr15                   375304 21 -  91754291 I
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=3713.000000
s hg38.chr3_KI270935v1_alt         87492 10 +    197351 TCCCCCGCTA
s panTro4.chr3_GL389630_random     48411 10 +    103936 TCCCCCACTA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199736367 10 + 202140232 CTCCCCACTC
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr2                     25251 10 + 192460366 GCCCCCGCTA
i macFas5.chr2                 I 6 C 0
s calJac3.chr17                   888651 10 -  74750902 TCACGTGCTC
i calJac3.chr17                C 0 C 0
e rheMac3.chr2                     15866 21 - 192599291 I
e mm10.chr16                    65405221 4922 -  98207768 I
e canFam3.chr33                 29041967 5697 +  31377067 I
e chlSab2.chr15                   375304 21 -  91754291 I
e papAnu2.chr2                     23004  0 - 187378091 C
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=20636.000000
s hg38.chr3_KI270935v1_alt         87502 100 +    197351 TTTAGTACTGCAGCTGGCACCTGCCCTCCCCACGCACTGCAG-----------------------------CTGGCACCTGCCCTCCCCACACCAGTATTTGGTACTGCAGCTGGCACCTGCCCTCCCC
s panTro4.chr3_GL389630_random     48421 129 +    103936 TTGAGTACTGCAGCTGGCACCTGCCCTCCCCACGCACTGCAGCTGGCACCTGCCCTCCCCACGCACTGCAACTGGCACCTGCCCTCCCCACACCAGTATTTGGTACTACAGCTGGCACCTGCCCTCCCC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199736377  89 + 202140232 TTTAGTACTGCAGCTGGCACCTGCCCTTCCCAGTCACTGCAG-----------------------------CTGGCACCTGCCCTCCCCAT-----------GCACTGCAGCTGGCACCTGCCCTCCCC
i ponAbe2.chr3                 C 0 I 4
e rheMac3.chr2                     15866  21 - 192599291 I
e mm10.chr16                    65405221 4922 -  98207768 I
e canFam3.chr33                 29041967 5697 +  31377067 I
e calJac3.chr17                   888661   0 -  74750902 C
e chlSab2.chr15                   375304  21 -  91754291 I
e macFas5.chr2                     25261   0 + 192460366 C
e papAnu2.chr2                     23004   0 - 187378091 C
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=4163.000000
s hg38.chr3_KI270935v1_alt         87602 48 +    197351 TCTGCTATTTAGTACTGCAGCTGGCACCTGCCCTCCACACAGCAGTAT
s panTro4.chr3_GL389630_random     48550 48 +    103936 TCTGCTATTTAGTACTGCAGCTGGCACCTGCCCTCCCCACACCAGTAT
i panTro4.chr3_GL389630_random C 0 C 0
e rheMac3.chr2                     15866 21 - 192599291 I
e mm10.chr16                    65405221 4922 -  98207768 I
e canFam3.chr33                 29041967 5697 +  31377067 I
e calJac3.chr17                   888661  0 -  74750902 C
e chlSab2.chr15                   375304 21 -  91754291 I
e macFas5.chr2                     25261  0 + 192460366 C
e papAnu2.chr2                     23004  0 - 187378091 C
e ponAbe2.chr3                 199736466  4 + 202140232 I
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=1392.000000
s hg38.chr3_KI270935v1_alt         87650 5 +    197351 TTAGT
s panTro4.chr3_GL389630_random     48598 5 +    103936 TTAGT
i panTro4.chr3_GL389630_random C 0 C 0
s macFas5.chr2                     25261 5 + 192460366 TTAGT
i macFas5.chr2                 C 0 C 0
e rheMac3.chr2                     15866 21 - 192599291 I
e mm10.chr16                    65405221 4922 -  98207768 I
e canFam3.chr33                 29041967 5697 +  31377067 I
e calJac3.chr17                   888661 0 -  74750902 C
e chlSab2.chr15                   375304 21 -  91754291 I
e papAnu2.chr2                     23004 0 - 187378091 C
e ponAbe2.chr3                 199736466 4 + 202140232 I
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=13686.000000
s hg38.chr3_KI270935v1_alt         87655 30 +    197351 ACTGCAGCTGGCACCTGCCCTCCCCACACC
s panTro4.chr3_GL389630_random     48603 30 +    103936 ACTGCAGCTGGCACCTGCCCTCCCCCCTGC
i panTro4.chr3_GL389630_random C 0 T 78
s ponAbe2.chr3                 199736470 30 + 202140232 ACTGCAGCTGGCACTTGCCCTCCCCATGCC
i ponAbe2.chr3                 I 4 C 0
s macFas5.chr2                     25266 30 + 192460366 TCTGCAGCTGGCACCTGCCCTCCCCACGTC
i macFas5.chr2                 C 0 C 0
e rheMac3.chr2                     15866 21 - 192599291 I
e mm10.chr16                    65405221 4922 -  98207768 I
e canFam3.chr33                 29041967 5697 +  31377067 I
e calJac3.chr17                   888661  0 -  74750902 C
e chlSab2.chr15                   375304 21 -  91754291 I
e papAnu2.chr2                     23004  0 - 187378091 C
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=573.000000
s hg38.chr3_KI270935v1_alt         87685 2 +    197351 AG
s ponAbe2.chr3                 199736500 2 + 202140232 AG
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr2                     25296 2 + 192460366 AG
i macFas5.chr2                 C 0 C 0
e rheMac3.chr2                     15866 21 - 192599291 I
e mm10.chr16                    65405221 4922 -  98207768 I
e canFam3.chr33                 29041967 5697 +  31377067 I
e calJac3.chr17                   888661 0 -  74750902 C
e chlSab2.chr15                   375304 21 -  91754291 I
e papAnu2.chr2                     23004 0 - 187378091 C
e nomLeu3.chr11                120822326 8191 + 123690457 I
e panTro4.chr3_GL389630_random     48633 78 +    103936 T

a score=1206.000000
s hg38.chr3_KI270935v1_alt         87687 7 +    197351 TATTTAG
s panTro4.chr3_GL389630_random     48555 7 +    103936 TATTTAG
i panTro4.chr3_GL389630_random T 78 C 0
s macFas5.chr2                     25298 7 + 192460366 TGCTCAG
i macFas5.chr2                 C 0 T 40
e rheMac3.chr2                     15866 21 - 192599291 I
e mm10.chr16                    65405221 4922 -  98207768 I
e canFam3.chr33                 29041967 5697 +  31377067 I
e calJac3.chr17                   888661 0 -  74750902 C
e chlSab2.chr15                   375304 21 -  91754291 I
e papAnu2.chr2                     23004 0 - 187378091 C
e ponAbe2.chr3                 199736502 0 + 202140232 C
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=2052.000000
s hg38.chr3_KI270935v1_alt         87694 14 +    197351 TACTGCAGCTGGCA
s panTro4.chr3_GL389630_random     48562 14 +    103936 TACTGCAGCTGGCA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199736502  3 + 202140232 TAC-----------
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr2                     25265 14 + 192460366 TTCTGCAGCTGGCA
i macFas5.chr2                 T 40 C 0
e rheMac3.chr2                     15866 21 - 192599291 I
e mm10.chr16                    65405221 4922 -  98207768 I
e canFam3.chr33                 29041967 5697 +  31377067 I
e calJac3.chr17                   888661  0 -  74750902 C
e chlSab2.chr15                   375304 21 -  91754291 I
e papAnu2.chr2                     23004  0 - 187378091 C
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=5704.000000
s hg38.chr3_KI270935v1_alt         87708 19 +    197351 CCTGCCCTCCCCACACCAG
s panTro4.chr3_GL389630_random     48576 19 +    103936 CCTGCCCTCCCCACACCAG
i panTro4.chr3_GL389630_random C 0 I 38
s macFas5.chr2                     25279 19 + 192460366 CCTGCCCTCCCCACGTCAG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     23004 13 - 187378091 CCTGCCCCCGCTA------
i papAnu2.chr2                 C 0 C 0
e rheMac3.chr2                     15866 21 - 192599291 I
e mm10.chr16                    65405221 4922 -  98207768 I
e canFam3.chr33                 29041967 5697 +  31377067 I
e calJac3.chr17                   888661  0 -  74750902 C
e chlSab2.chr15                   375304 21 -  91754291 I
e ponAbe2.chr3                 199736505  0 + 202140232 C
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=726.000000
s hg38.chr3_KI270935v1_alt         87727 2 +    197351 TA
s panTro4.chr3_GL389630_random     48633 2 +    103936 TA
i panTro4.chr3_GL389630_random I 38 C 0
s ponAbe2.chr3                 199736505 2 + 202140232 TA
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr2                     25298 2 + 192460366 TG
i macFas5.chr2                 C 0 C 0
e rheMac3.chr2                     15866 21 - 192599291 I
e mm10.chr16                    65405221 4922 -  98207768 I
e canFam3.chr33                 29041967 5697 +  31377067 I
e calJac3.chr17                   888661 0 -  74750902 C
e chlSab2.chr15                   375304 21 -  91754291 I
e papAnu2.chr2                     23017 0 - 187378091 C
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=422.000000
s hg38.chr3_KI270935v1_alt         87729 1 +    197351 T
s panTro4.chr3_GL389630_random     48635 1 +    103936 T
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199736507 1 + 202140232 T
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr2                     25300 1 + 192460366 C
i macFas5.chr2                 C 0 T 40
s calJac3.chr17                   888661 1 -  74750902 T
i calJac3.chr17                C 0 C 0
e rheMac3.chr2                     15866 21 - 192599291 I
e mm10.chr16                    65405221 4922 -  98207768 I
e canFam3.chr33                 29041967 5697 +  31377067 I
e chlSab2.chr15                   375304 21 -  91754291 I
e papAnu2.chr2                     23017 0 - 187378091 C
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=1008973.000000
s hg38.chr3_KI270935v1_alt         87730 454 +    197351 TTAGTACTGCAGCTGGCACC-TGCCCTCCCCACGTCAGTGTTCAGGATTCTTTCTCTCTGTTTTTCTTTTTTTTCCATAGTTTTCACCTTTCTATAATTCACTTATTTGTTATGTTTATTGTTTtgtgaaaggaaaataaatcttgggcccccaaaatcactaagctaaaggggaaagtcaagccgggaatggcttagggccgacctgccccccattctattcaaaatcacccc-ctgctcactgagatagatgcatatctgattgccttctttggaaaggcccatcagaaactcaaaagaatgcgacc-tttgtctctcacccacctgtgacctggaagctttctcctggctgcgagttgtcccacatttgcttggcgttgcccggccttttccagactgaaccaatgttcatcttacatgtgttgattgatgtctcatgtctccctaaaacgta------------------t
s panTro4.chr3_GL389630_random     48636 455 +    103936 TTAGTACTGCAACTGGCACCCTGCCCTCCCCACGTCAGTGTTCAGGATTCTTTCTCTCTGTTTTTCTTTTTTTTCCATAGTTTTCACCTTTCTATAATTCACTTATTTATTATGTTTATTGTTTtgtgaaaggaaaataaatcttgggcccccaaaatcactaagctaaaggggaaagtcaagctgggaacggcttagggccaacctgccccccattctattcaaaatcacccc-ctgctcactgagatagatgcatatctgattgccttctttggaaaggcccatcagaaactcaaaagaatgctacc-tttgtctctcacccacctgtgacctggaagctttctcctggctgcgagttgtcccacgtttgcttggcgttgcccggccttttccagactgaaccaatgttcatcttacatatgttgattgatgtctcatgtctccctaaaacgta------------------t
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199736508 472 + 202140232 TTAGTACTGCAGCCGACACC-TGCCCTCCCCACGCCAGTGCTCAGGATTCTTTCTCCCTGTTTTTCTTTTTTTTCCATAGTTTTCACCTTTCTATAATTCACTTATTTATTATGTTTATTGTTTtgtgaaaggaaaataaatcttgggcccccaaaatcactaaactaaaggggaaagtcaagctgggaatggcttagggtcaaactgccccccattctattcaaaatcacccc-ctgctcactgagatagatgcatatctgattgccttctttggaaaggcccatcagaaactcaaaagaatgctacc-tttgtctctcacccacctgtgccctggaagctttctcctggcttcaagttgtcccacctttgcttggcattgccctgccttttccagactgaacaaatgttcatcttacatatgttgattgatgtctcatgtctccctaaaacatatgaaatcaagctgtgctct
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                     15887 454 - 192599291 TTAGTTCTGCAGCTGGCACC-TGCCCTCCCCAAGTCAGTGCTCAGGATTCTTTCTCCCTGTTTTTC-TTTTTTCCCATAGTTTTCACCTTTCTATAATTCACTTATTTATTATATTTATTGTTTtgtgaaaggagaataaatcttgggcccccaaaatcactaagctaaaggggaaagtcaagctgggaacggcttagggccaacctgcccccgattctattgaaaatcacccc-ctgctcactgagatagatgcgtttctcagtgccgtctttggagagactcatcagaaactccaaagaacgtaaccgtttgtctctcacccacctgtgacctggaagctttctcctggcttcgagttgtgccacctttgcttggcgttgccctgccttttccagaccgaaccaatgttcatcttacatatgctgattgatgtctcttgtctccctacaatgtg------------------t
i rheMac3.chr2                 I 21 I 18
s macFas5.chr2                     25261 454 + 192460366 TTAGTTCTGCAGCTGGCACC-TGCCCTCCCCACGTCAGTGCTCAGGATTCTTTCTCCCTGTTTTTC-TTTTTTCCCATAGTTTTCACCTTTCTATAATTCACTTATTTATTATATTTATTGTTTtgtgaaaggagaataaatcttgggcccccaaaatcactaagctaaaggggaaagtcaagctgggaacggcttagggccaacctgcccccgattctattgaaaatcacccc-ctgctcactgagatagatgcgtttctcagtgccgtctttggagagactcatcagaaactccaaagaacgtaaccgtttgtctctcacccacctgtgacctggaagctttctcctggcttcgagttgtgccacctttgcttggcgttgccctgccttttccagaccgaaccaatgttcatcttacatatgctgattgatgtctcttgtctccctacaatgtg------------------t
i macFas5.chr2                 T 40 I 18
s papAnu2.chr2                     23017 455 - 187378091 TTAGTTCTGCAGCTGGCACC-TGCCCTCCCCACGTCAGTGCTCAGGATTCTTTCtccctgtttgtcttttttttccataGTTTTCACCTTTCtataattcacttatttattatatttattgttttgtgaAAGCAGAATAaatcttgggcccccaaaatcactaagctaaaggggaaagtcaagctgggaacagCTTAGGGCCAACCTGCCCCCGATTCTATTGAAAATCACCcc-ctgctcactgagatagatgcgtATCTGATTGCCGTCTTTGGagaggctcatcagaaactccAAAGAACGTAACCGTTTGTCTCTCAcccacctgtgacctggaagctttCTCCTGGCTTCGAGTTGTGCCACCTTTGCTTGGCGTTGCCCTGCCTTTTCCAGAccgaaccaatgttcatcttccATATGCTGATTGATGTCTCTTGTCTCCCTACAATGTG------------------T
i papAnu2.chr2                 C 0 I 18
s chlSab2.chr15                   375325 455 -  91754291 TTAGTTCTGCAGCTGGCACC-TGCCCTCCCCACGTCAGTGCTCAGGATTCTTTCTCCCTGTTTGTCTTTTTTTTCCATAGTTTTCACCTTTCTATAATTCACTTATTTATTATATTTATTGTTTtgtgaaaggagaataaatcttgggcccccaaaatcactaagctaaaggggaaagtcaagctgggaatggcttagggccaacctgcccccgattctattgaaaatcacccc-ctgctcactgagatagatgcgtatctgattgccgtctttggagaggctcatcagaaactctaaagaacataactgtttgtctctcacccacctgtgacctggaagctttctcctggctttgtgttgtgccacctttgcttggcattgccctgccttttccagatcgaaccaatgttcatcttacgtatgctgattgatgtctcttgtctccctacaatgtg------------------t
i chlSab2.chr15                I 21 I 32
s calJac3.chr17                   888662 453 -  74750902 TTAGTACTGCAGCTGGCACC-C-CCCAGCCCATGTCAGTGTTCATGATTCTTTCTCCTTTTTTTA--TTTTTTTCCATAGTTTTCACCTTTCAATAATTCACTTACATATTACATTTATTGTTTtgtgaaaggaaaataaatcttggggccccaaagtcactaagctgaagggaaaagtcaagctgggaaccgcttcgggcagacctgcctcccgttctgtccaaagtcacccctctgctcaccgagataaacgcatatttaactgcctcctttggagaggctgatcagacactcggaagaatgcagccctgtgtctcttctctacctgcgacctggaagcctgctactggcttccagttgtcccacctttgcttggagttgtccctccttttccaggctgaaccaatgttcctcttacatatattgattgatgtctcgtgtctccctaaaatgta------------------t
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65405221 4922 -  98207768 I
e canFam3.chr33                 29041967 5697 +  31377067 I
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=20554.000000
s hg38.chr3_KI270935v1_alt         88184 24 +    197351 ------------------gaccaccttg-gcacatgtcgtcag
s panTro4.chr3_GL389630_random     49091 21 +    103936 ------------------gaccaccttg-gcacatgtc---ag
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199736980 24 + 202140232 ------------------gaccaccttg-gcacatgtcgtcag
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                     16359 24 - 192599291 ------------------gaccaccttg-gcacacgtcgtcag
i rheMac3.chr2                 I 18 C 0
s macFas5.chr2                     25733 24 + 192460366 ------------------gaccaccttg-gcacacgtcgtcag
i macFas5.chr2                 I 18 C 0
s papAnu2.chr2                     23490 14 - 187378091 ------------------gaccaccttg----------gtca-
i papAnu2.chr2                 I 18 C 0
s calJac3.chr17                   889115 43 -  74750902 gaacccaggctgtgccccgcctaccttgggcccaggtcatcag
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65405221 4922 -  98207768 I
e canFam3.chr33                 29041967 5697 +  31377067 I
e chlSab2.chr15                   375780 32 -  91754291 I
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=1348224.000000
s hg38.chr3_KI270935v1_alt         88208 625 +    197351 gacatcctgaggctgtgtcacgggtgtgcatcttcaaccttggaacaataaactttctaaattaactgagacctgtctcagatttggggggttcacaTTTtggtaaccatggagggattctgagttgaggtacccctgacctttgacagatctattggtgcttggtagcaccatgagctaaccttatggctcaaaccaacaggacaatttgctgaggtctgggagcaccccctccatagag-tccctgatctctcaaaacttggtcgtgatctaaagttta-tttgatgtacaactccccctctccttcttttggagttttatttgcttccaagaaggaaggcaagatttcctgggtccgtgatgatggaaggctgacaactcttttatggagtttgagcttg---ctcccagcagggaagacaagttcgagtttttttcctgcttcaaggatggtagagagcagtcttcagcctgagacccatccctaggtaagtagctgaactgaggttttgtcttggctgaaggttaacaaccagctggtctgaatttcttcttcccattagagcagtctgtggtcatatcatttgacttttgttgttgttgtt-ttttctggtctttctctcatcag
s panTro4.chr3_GL389630_random     49112 626 +    103936 gacatcctgaggctgtgtcacgggtgtgcatcttcaaccttggaacaataaactttctaaattaactgagacctgtctcagatttggggggttcacaTTTtggtaaccatggagggattctgagttgaggtgcccctgacctttgacagatctattggtgcttggtagcagcatgagctaaccttatggctcaaaccaacaggacaatttgctgaggtctgggagcaccccctccagagag-tccctgatctctcaaaacttggtcgtgatctaaagttta-tttgatgtacaactccccctccccttcttttggagttttatttgcttccaagaaggaaggcaagatttcctgggtccgtgatgatggaaggctgacaactcttttatggagtttgagcttg---ctcccagcagggaagacaagttcgagtttttttcctgcttcaaggatggtagagagcagtcttcagcctgagacccatccctaggtaagtagctgaactgaggttttgtcttggctgaaggttaacaaccagctggtctgaatttcttcttcccattagagcagtctgtggtcatatcatttgacttttgttgttgttgttgttttctggtctttctctcatcag
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199737004 625 + 202140232 gacctcctgaggctgtgtcacggacgcgcatcttcaaccttggaaaaataaactttctaaattaactgagacctgtctcagatttggggggttcacaTGTtggtaaccgtggagggattctgagtggagatgcccctgacctttgacagagctattggtgcttggtagcagcacgagctaaccttatggctcaaaccaacaggacaatttgctgaggtctgggagcaccccctccagagag-tccctgatctctcacaacttggtcgtgatctaaagttta-tttgatgtacaactccccctccccttcttttggagttttatttgcttccaagaaggaaggcaagatttcctgggtccgtgatgatggaaggctgacaactcttttatggattttgagcttg---ctcccagtagggaagacaagttcaagtttttttcctgcttcaaggatggtggagagcagtcttcagcctgagacccatccctaggtaagtagctgaattgagattttgtctgggctaaaggttaacaaccagctggtcttaatttcttcttcccattagagcagtctgtggtcacatcatttggctttttttgttgttatt-tgttctggtctttctctcatcag
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                     16383 623 - 192599291 gacttcctgaggctgtgtcacgggcatgtgtcctcagccttggcaaaataaaccttctaatttcactgagacctgtctcagatttggggagttcacaT-TTTgcagccatggagggattctgagtggagatgcccccgacctttgacagatctattggagcatgatagcaacatgagctaaccttacggctcaaaccaataggacaa-ttgctgaggtctgggagcacccactccagagaa-cccctgatctctcaaaacttggtcgtaatctaaagttta-tttgttgtacaattccccctccccttcttttggagttttatttgcttccaataaggaaggcaagatttcctgggtgcatgatgatggaaggcaggcaactcttctatggagtttgagcttg---ctcccaatagggaagacaagttcgagtttctttcctgcttctaggatggtagagagcagtcttcagcctgggacccatccctaggtaagtagctgcattgaggttttgtcttggttaaagcttaacaaccagctggtctgaatttcttcttaccattagggcagtcagtggtcatttcattgggctttttttgttgctgtt-tgttctggactttctctcatcag
i rheMac3.chr2                 C 0 C 0
s macFas5.chr2                     25757 623 + 192460366 gacttcctgaggctgtgtcacgggcatgtgtcctcagccttggcaaaataaaccttctaatttcactgagacctgtctcagatttggggagttcacaT-TTTgcagccatggagggattctgagtggagatgcccccgacctttgacagatctattggagcatgatagcaacatgagctaaccctacggctcaaaccaataggacaa-ttgctgaggtctgggagcacccactccagagaa-cccctgatctctcaaaacttggtcgtaatctaaagttta-tttgttgtacaattccccctccccttcttttggagttttatttgcttccaataaggaaggcaagatttcctgggtgcatgatggtggaaggcaggcaactcttctatggagtttgagcttg---ctcccaatagggaagacaagttcgagtttctttcctgcttctaggatggtagagagcagtcttcagcctgggacccatccctaggtaagtagctgcattgaggttttgtcttggttaaagcttaacaaccagctggtctgaatttcttcttaccattagggcagtcagtggtcatttcattgggctttttttgttgctgtt-tgttctggactttctctcatcag
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     23504 623 - 187378091 gacctcctgaggctgtgtcacggacATGTGTCCtcagccttggcaaaataaaccttctAATTTCACTGACACCTGTCTCAGATTTGGGGCGTTCACAT-TTGGCAGCCATGGAGGAATTCTGAGTGGAGATGCCCCTGACCTTTGACAGATCTATTGGTGCTTGGTAGCAACATGAGCTAACCTTACGgctcaaaccaataggacaa-ttGCTGAGGTCGGGGAGCACCCACTCCAGAGAA-CCCCTGATCTCTCAAAACTTGGTCGTAATCTAAAGTTCA-TTTGCTGTACAATTCCCCCTCCCCTTCTTTTGGAGTTTTATTTGCTTCCAATAAGGAAGGCAAGATTTCCGGGGTGCATGATGATGGAAGGCAGGCAACTCTTCTATGGAGTTTGAGCTTG---CTCCCAATAGGGAAGACAAGTTCGAGTTTctttcctgcttctaggatggtagagAGCAGTCTTCAGCCTGGGACCCATCCCTAGGTAAGTAGCTGCATTGAGGTTTTGTCGTGGTTAAAGCTTAACAACCAGCTGGTCTGAATTTCTTCTTACCATTAGGACAGTCAGTGGTCATTTCAttggactttttttgttgctgtt-tgttctGGACTTTCTCTCATCAG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   375812 619 -  91754291 gacctcctgaggctgtgtcacgggcatgtgtcctcagccttggcaaaataaaccttctaatttcactgagacctgtctcagatttggggggttcacaT-Ttggcagccatggaggggttctgagtggagatgcccctgacctttgacagatctactggtgcttggtagcaacatgagctaaccttacggctcaaaccaataggacaa-tcgctgaggtctggaagcaccccctccagagaaccccccgatctctcaaaacttggtcgtgatctaaagttta-tctgctgtacaattccccct-cccttcttttggagttttatttgcttccaataaggaaggcaagatttcccgggtccatgacgatggaaggcaggcaagtcttctatggagtttga----g---ctcccaacagggaagacaagttcgagtttctttcctgcttccaggatggtagagagcagtcttcagcctgggacccatccctaggtaagtagctgcatagaggttttgtcttggttaaagcttaacaaccagctggtctgaatttcttcttaccattagggcagtcagtggtcatttcattgggcttttcttgttgctgtt-cgttctggactttctctcatcag
i chlSab2.chr15                I 32 C 0
s calJac3.chr17                   889158 606 -  74750902 gacctcctgaggctgcgtgacgggtgtgcgtcctcaaccttggcaaaataaagtttctaaattgactgagacctatctcagatatttggggttcacaTTTtggtaaccataaagggattctgagtggagatgcccctgacctttgacaagtctgttggtgcttggtacctgcatgagttaaccttatggttcaaaccaatgggacaatttgctgaggtctgggagcaccccctccaaagaa-tgtctgatctcccaaaatttggtcgtgatctaaagtttattttgctgtacaactc------ccctgtttttggagttttacttgcttccagcaaggaaggcacgatttcctgcgtccatgatgatggaaggcag-caactcctctacggggcttcagcttgaacctctcagcagggaagacaagttggagtcttttt---------aggatggtagagagcagccttcagcctgagactcatccctaggtaagcagctgaactggggttttgtct----taaagtttaacaa-cagttggtcttaatttctcctt-ccatgagagcactcagtgactatatTGTT-GGTTTTTTTTTCTGTTGTT-TGTTCTGGTCTTTCTCTCATCAG
i calJac3.chr17                C 0 I 9517
e mm10.chr16                    65405221 4922 -  98207768 I
e canFam3.chr33                 29041967 5697 +  31377067 I
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=196507.000000
s hg38.chr3_KI270935v1_alt         88833 112 +    197351 atttgaccaactctacctgacttggtcaaatccaagtgagaattccaaattatgggtaacaaagcctctctaatttggctaaaattccttgcagctgcaaaagagg-----aaaaaa
s panTro4.chr3_GL389630_random     49738 112 +    103936 atttgaccaactctacctgacttggtcaaatccaagtgagaattccaaattatgggtaacaaagcctctctaatttggctaaaattccttgcagctgcaaaagagg-----aaaaaa
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199737629 112 + 202140232 gtttgaccaa--ctacctgacttggtcaaatccaagtgagaattccaaattatgggtaacaaaacctctctaatttggctaaaattccttgcagctgcaaaaAAGG---AAAAAAAA
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                     17006 116 - 192599291 atttgaccaactctacctgacttggtcaaatccaagtgagaattccaaattatgggtaacaaagcc-ctctaatttggcaaaaattccttgcaactgcaaaaGAGGAAaaaaaaaaa
i rheMac3.chr2                 C 0 I 2
s macFas5.chr2                     26380 114 + 192460366 atttgaccaactctacctgacttggtcaaatccaagtgagaattccaaattatgggtaacaaagcc-ctctaatttggctaaaattccttgcaactgcaaaagagg--aaaaaaaaa
i macFas5.chr2                 C 0 I 2
s papAnu2.chr2                     24127 111 - 187378091 ATTTGACCAACTCTACCTGACTTGGTCAAATCCAAGTGATAATTCCAAATTATGGGTAACAAAGCC-CTCTAATTTGGCTAAAATTCCTTGCAActgcaaaagagg-----aaaaaa
i papAnu2.chr2                 C 0 I 2
s chlSab2.chr15                   376431 111 -  91754291 atttgaccaactctgcctgacttggtcaaatccaagtgagaattccaaattatggataacaaagcc-ctctaatttggctaaaattccttgcaactgcaaaaGAGG-----Aaaaaa
i chlSab2.chr15                C 0 I 7898
e mm10.chr16                    65405221 4922 -  98207768 I
e canFam3.chr33                 29041967 5697 +  31377067 I
e calJac3.chr17                   889764 9517 -  74750902 I
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=1958983.000000
s hg38.chr3_KI270935v1_alt         88945 1622 +    197351 cta-----------aacgaaaa----caaCAAATCACGTGCTTGGTTTCTGTGTTTGCTTTCTGTCTTAAAAAACAAACAAACAAAAA---Caacaaatgctctttcacttacttttcttcctccctatacctcctcctgcctttgccatctgcgggaccaaaaaa-atctagagaaggcttccaatgactcgagcccctttaaaggatccggaacaaaggggccactcaccccttccagggtgctctgttttctttgtggagtttcaagagtgatgggcggattcttcttaggtctaaagctctgctgtcttcctgtacggcatgacctgacctctttggctttgggggaaccagagatgaccctgcactgtgagaggatttgaccttggcgtgtgtaatggcagacgagaactacaaagaaggggtggctgagcacagtttacagggaatggtcttggctgtttttttgtttttttttttttctcttctaggaagctgtgatttaaggatcctaattctagttcagagatgcatcctaaagggtcttctctattgctttttctcccaaaatgaatctcagtttgggttgtc--tatgtatttgcatgaggaactgaactgttgttgtcataggtaaatgagagattgagttttctcagctccaaagagaaagggcgtttgctcctcccag-------ccgagtactccatagggttcatggcgcctctacttgccagagtttatgtaaagtggaagtaatatggtctttctgcacatttacatt---aaaaaaaaaggagccctgaggttgacctgcaaactgtagagttcctgagtcctcttttttctctagtttcttctctgcctgctttaaatttgctgttatttttctattaagataaaaaacactgtttggatcagatagtttttctgtttgtaaactggtgaatttgtatttatttcatggctaaatttctttttttcttttctttctcttttttttttttctttttttttttttgaggcagagtttcactcttgttgcccaggctggagtgcaatggcgtgatcttgggtcaccacagtctcctcttccctggttcaagtgattctcttgcctcagcctcccgagtagctgggattacaggcatgcaccaccatgcctggctaattttttgtatttttagtagagatggggtttctccatgttcgtcaggctggtctccaactcctgacctcaggtgatctgcccgcctcggcctcccaaggtgctgggattacaggcgtgagtcaccgcgcccagctttcatggctaaatttctgaagtaaaagctataggatctttgtgtgtgtgtatatatttaaaaggcctttataatttctataattttatgtttaattggcaattaaatctgttttaatttccctccagcacaccagactttttctctccatacgttatgatgtaaattttgctattcgattttcacctcagtttccttaaaatgcaaattcaaggctatttagctgacaaccgcttagagtagtaaaacaggttatcaagaattcgaaggtgtggctgggcacggtggctcacgtctgtaatcctagc-atttgggaggctgagccgcaaagatctcttgaggtcagg
s panTro4.chr3_GL389630_random     49850 1617 +    103936 cta-----------aacgaaaaaaacCAACAAATCATGTGCTTGGTTTCTGTGTTTGCTTTCTGTCTTAAAAAACAAACAAACAAAAAA--Caacaaatgctctttcacttacttttcttcctccctatacctcctcctgcctttgccatctgcggtaccaaaaaa-atctagagaaggcttctaatgacttgagcccctttaaaggattcggaacaaaggggccactcaccccttccagggtgctcttttttctttatggagtttcaagagtgatgggcggattcttcttaggtctaaagctctg---tcttcctgtatggcatgacgtgacctctttggctttggaggaaccagagatgaccctgcactgtgagaggatttgaccttggcgtgtgtaatggcagacgagaactacagagaaggggtggctgagcacagtttacagggaatggtcttggctgtttTTTT-TTTTTttttttttctcttctaggaagctgtgatttaaggatcctaattctagttcagagatgcatcctaaagggtcttctctattgctttttctcccaaaatgaatctcagtttgggttgtc--tatgtatttgcatgaggaactgaactgttgttgtcataggtaaatgagagactgagttttctcagctccaaagagaaagggcgtttgctcctcccag-------ccgagtactccatagggttcatggtgcctctacttgccagagtttatgtaaagtggaagTAATATGGTCTTTCTGCATGTttacatt---aaaaaaaaaagagccctgaggttgacctgcaaactatagagttcctgagtcctcttttttctctagtttcttctctgcctgctttaaatttgctgttatttttctgttaacataaaaaacactgtttggacctgacagtttttctgtttgaaaactggtgaatttgtatttatttcatggctatatttctttttttcttttctttctctctttttttttt------tttgttttgaggcagagtttcactcttgttgcccaggatggagtgcaacggcgtgatcttgggttaccacagtctccgcttccctggttcaagtgattctcttgcctcagcctcccgagtagctgggattacaggcatgcaccaccatgcctggctaattttttgtatttttagtagagatggggtttctccatgttggtcaggctggtctccaactcctgacctcaggtgatctgcccgcctcagcctcccaaggtgctgggattacaggcgtgagtcaccgcgcccagctttcatggctaaatttctgaagtaaaagctataggatctttgcgtgtgtgcatatatTTAAAAGGCCTTTATAatttctataattttatgtttaattggcaattaaatctgttttaatttccctccagcacaccagactttttctctccatacgttatgatgtaaattttgctattcgattttcacctcagtttccttaaaatgcaaattcaaggctatttagctgacaaccgcttagagtagtaaaacaggttatcaagaattcgaaggtgtggctgggcacggtggctcgcgtctgtaatcctagc-atttgggaggctgagccgcaaagatctcttgaggtcagt
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199737741 1600 + 202140232 CTA-----------AACCCAAAAAACCAACAAATCATGTGCTTGGTTTCTGCGTTTGCTTTCTGTCTTAAAAAACGAACCAAAAAAAA---Caagaaatgctctttcacttacttttctttctccctatacctcctgccccctttgccatctgcagtaccaaaaaa-atctagagaaggcttctactgactcgagcccctttaaaggattcagaacaaaggggccattcaccccttctggggtgctctgttttctttgtggagtttcaagagtgatgggcggattcttcctagatctaaagctctg---tcttcctgtatggcatgacctgaccactttggctttgggggaaccagagatgaccctacactgtgagaggatttgaccttggcgtgtgtaatggcagatgagaactacaaagaaagggtggctgagcacagtttacagggaatggtCTTGGctgg-------gttttttttttttctcttctaggaagctgtgatttaaggatcctaattctagttcagagatgcatcctaaagggtcttctctattgctttttctcccaaaatcaatctccgtttgggttgtctgtgtgtatttgcatgagtaactgaactgttgttgtcataggtaaatgagagattgagttttctcagctccaaagagaaagggcgtttgctcctcccag-------ctgagtactccacagggttcatggtgcctctacttgccagagtttatgtaaagtggaagTAATATGGTCTTTGTGCACATttacatt---aaaaaaaaaagagccctaaggttgacctgcaaacaatagagttcctgagttctcttttttctctattttcttctctgcctgctttaaatttgctgttatttttctattaagataaaaaacactgtttggatctgacagtttttctgttggtaaactggtgaatttgtatttatttcatggctacatttctttttttcttttctttctcttttttttt-------------------gacagagtttcactcttgttgcccaggctggagtgcaatggcgtgatcttgggtcaccacaatctccacctccctggttcaagcgattctcttgcctcagcctcccgagtagctgggattacaggcatgcaccaccatgcctggctaattttttgtatttttagtagagatggggtttctccatgttggtcaggctggtctcaaactcctgacctcaggtgatctggccgccttggcctcccaaggtgctgggattacaggcatgagtcatcacgcccagctttcatggctaaatttctgaagtaaaagctataggatctttgtgtgtgtATATATACTTAAAAGGCCTTTATAatttctataattttatgtttaattggcaattaaatctgttttaatttccctccagcacaccagagtttttctctccatatgttatgatgtaaattttgctattcgattttcacctcagttttcttaaaatgcaaattcaaggctatttagctgacaactgcttagagtagtaaaacaggttatcaagaatttgaaggtgtggctgggtgcagtggctcacatctgtaatcctagctctttgggaggctgagccgcaaagatctcttgaggtcagg
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chr2                     17124 1612 - 192599291 ctaaactaaccaacaaccaaacaaacaaac-aaccaTGCACTTGGTTTCTGTGTTTGCTTTCTGTCTT--Aaaaaaaaccaacaaaaaaaccaacaaatgctctttcacttacttttcttccaccctatacctcctttcccccttgccatctacagtaccaaaaaacacctagagaaggcttctaatgact--aatccctttaaaggattcagtacaaaggggccactccccgctttcggggtgctctgttttctttgtggagtttcaagagtgataggcagattcttcttaggtctaaagctctg---tcttcctgtatggcatgacctgacctctttggctttgggggaaccagagatgaccttgcactgtgagaggattggaccttggcgtgtgtaatggcagacgagaa------agaagtggtggctgag--cagtttGCAGGGAATGGtcttggctgg-----------ttttttttcctcttctaggaagccgtgatgtaaggatcctaattctagttcagagatgcattctaaagggtcttctctattgctttttctcccaaaatgaatctcagtttggcttgtctgtgtgcatttggatgaggaactgaactgttgttttcataggtaaatgagaaattgagttttctcagctccgaagagaaagggcgtttgccccacccagcATGAACCcgagtactccatcag--ttctggtgcctctacttgccagagtttatgtaaagtggaTGTAATATGGTCTTTGTGCACATttacatt-aaaaaaaaaaaaagaccctaaggttgacctgcaaacgacagaattcctgagttctcttttttctctattttcttctctgcctgctttcaatttgctgttatttttctattaagataaaaaacactgtttggatccgacagtttttttgtttgcaaactggtgaatttgtatttatttcatggctaaatttctttttttcttttctttttctttctttttttt------------ttttgagacagtttcactcttgttgcccaggctggagtgcaatggagtgatcttggctcactgcaacctccgtctccctggttcaaacgattctcttgcctcagcctcccgagtagctgggattacaggcatgcaccaccatgcccggctaattttttgtatttttagtagagatggggtttctccatgttggtcaggctggtctcgaactcctgacctcaggtgatccgcctgcctcagcctcccaaggtgctgggataacaggcatgagccactgtgcccagctttcatggctaaatttttgaagtaaaagctataggatctttgtgtgtgtatgtatatTTAAAAGGCCTTTATAatttctataattttatgtttaattggcaattaaatctgttttaatttccctctagcacaccagactttttctctccataccttatgatgtaaactttgctatttgattttcacctgagtttctttaaaatgcaaattcaacgctatttagctgacaactgcttagagaagtaaaacaggctatcaagaattcaaaggtGTggccaggtgcagtggctcacgcccgtaatcctagcactttgggaggctgagtcgcgaagatctcttgaggtcagg
i rheMac3.chr2                 I 2 N 0
s macFas5.chr2                     26496 1613 + 192460366 ctaaacTaaccaacaaccaaacaaacaaac-aaccaTGCACTTGGTTTCTGTGTTTGCTTTCTGTCTT-AAaaaaaaaccaacaaaaaaaccaacaaatgctctttcacttacttttcttccaccctatacctcctttcccccttgccatctacagtaccaaaaaacacctagagaaggcttctaatgact--aatccctttaaaggattcagtacaaaggggccactccccgctttcggggtgctctgttttctttgtggagtttcaagagtgataggcagattcttcttaggtctaaagctctg---tcttcctgtatggcatgacctgacctctttggctttgggggaaccagagatgaccttgcactgtgagaggattggaccttggcgtgtgtaatggcagacgagaa------agaagtggtggctgag--cagtttGCAGGGAATGGtcttggctgg-----------ttttttttcctcttctaggaagccgtgatgtaaggatcctaattctagttcagagatgcattctaaagggtcttctctattgctttttctcccaaaatgaatctcagtttggcttgtctgtgtgcatttggatgaggaactgaactgttgttttcataggtaaatgagaaattgagttttctcagctccgaagagaaagggcgtttgccccacccagcATGAACCcgagtactccatcag--ttctggtgcctctacttgccagagtttatgtaaagtggatgtaatatggtctttgtgcacatttacatt-aaaaaaaaaaaaagaccctaaggttgacctgcaaacgacagaattcctgagttctcttttttctctattttcttctctgcctgctttcaatttgctgttatttttctattaagataaaaaacactgtttggatctgacagtttttttgtttgcaaactggtgaatttgtatttatttcatggctaaatttctttttttcttttctttttctttctttttttt------------ttttgagacagtttcactcttgttgcccaggctggagtgcaatggagtgatcttggctcactgcaacctccgtctccctggttcaaacgattctcttgcctcagcctcccgagtagctgggattacaggcatgcaccaccatgcccggctaattttttgtatttttagtagagatggggtttctccatgttggtcaggctggtctcgaactcctgacctcaggtgatccgcctgcctcagcctcccaaggtgctgggataacaggcatgagccactgtgcccagctttcatggctaaatttttgaagtaaaagctataggatctttgtgtgtgtatgtatatTTAAAAGGCCTTTATAatttctataattttatgtttaattggcaattaaatctgttttaatttccctctagcacaccagactttttctctccataccttatgatgtaaactttgctatttgattttcacctgagtttctttaaaatgcaaattcaacgctatttagctgacaactgcttagagaagtaaaacaggctatcaagaattcaaaggtGTggccaggtgcagtggctcacgcccgtaatcctagcactttgggaggctgagtctcgaagatctcttgaggtcagg
i macFas5.chr2                 I 2 C 0
s papAnu2.chr2                     24240 1600 - 187378091 cta-----------aaccaaacaaacaaa--aaccatgcacttggtttctgtgtttgctttctgtctt---aaaaaaaccaacaaaaaaaccaacaaatgcTCTTTCACTTACTTTTCTTCCACCCTATACCTCCTTCCCCCCTTGCCATCTGCAGTACcaaaaaaaatctagagaaggCTTCTAATGACT--AATCCCTTTAAAGGATTCAGTACAAAGGGGCCACTCTCTGCTTTCCAAGtgctctgttttctttgtggagtTTCAAGAGTGATAGGCAGATTCTTCTTAGGTCTAAAGCTCTG---TCTTCCGGTATGGCATGACCTGACCTCTTTGGCTTTGGGGGAACCAGAGATGACCTTGCACTGTGAGAGGATTTGACCTTGGCGTGTGTAATGGCAGACGAGAA------AAAAGCGGTGGCTGAG--CAGTTTGCAGGGAATGGTCTTGGctgg-----------ttttttttcctcttctaggAAGCCGTGATTTAAGGATCCTAATTCTAGTTCAGAGATGCATTCTAAAGGGTCTTCtctattgctttttctcccaAAATGAATCTCAGTTTGGCTTGTCTGTGTGCATTTGGATGAGGAACTGAACTGTTGTTTTCATAGGTAAATGAGAGATTGAGTTTTCTCAGTTCCGAAGAGAAAGGGCGTTTGCCCCACCCAGCATGAACCCGAATACTCCGTCGG--TTCTGGTGCCTCTACTTGCCAGAGTTTATGTAAAGTGGATGTAATATGGTCTTTGTgcacatttacattaaaaaaaaaaaaaagaccctaagGTTGACCTGCAAACGACAGAGTTCCTgagttctcttttttctctattttcttctctgcctgctttcaatttgctgttatttttctattaagataAAAAACACTGTTTGGATctgacagtttttttgtttgcaaactggtgaatttgtatttatttcatggctaaatttctttttttcttttctttttctttctttttttt------------ttgagacagagtttcactcttgttgcccaggctgtagtgcaatggagtgatcttggctcactgcaacctccgtctccctggttcaagcgattctcttgcctcagcctcccgagtagctgggattacaggcatgcaccaccatgcccggctaattttttgtatttttagtagagatggggtttctccatgttggtcaggctggtctcgaactcctgacctcaggtgatccgcctgcctcagcctcccaaggtgctgggattacaggcatgagccatcgtgcccagctttCATGGCTAAATTTCTGAAGTAAAAGCTATAggatctttgtgtgtgtatgtatatttaaaaggcctttataatttctataattgTATGTTTAATTGGCAATTAAATCTGTTTTAATTTCCCTCTAGCACACCAGACTTTTTCTCTCCATACCTTATGATGTAAACtttgctatttgattttcacctgagtttctttaaaatgcaaattcaacGCTATTTAGCTGACAACTGCTTAGAGAAGTAAAACAGGCTATCAAGAATTCAAaggtgtggccaggtgcagtggctcacgcccgtaatcctagcactttgggaggctgagtcgcgaagatctcttgaggtcagg
i papAnu2.chr2                 I 2 C 0
e mm10.chr16                    65405221 4922 -  98207768 I
e canFam3.chr33                 29041967 5697 +  31377067 I
e calJac3.chr17                   889764 9517 -  74750902 I
e chlSab2.chr15                   376542 7898 -  91754291 I
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=171357.000000
s hg38.chr3_KI270935v1_alt         90567 225 +    197351 agttcaaaaccatcttggccaacatgttgaaaccccgtctctactaaaaatacaaaaaaaa-ttagccagatgtggtggcaggtgcctataatcccagctactcaggaagctgaggcaggagaatcacttgaagccaggaggcagagtttgcagtgagtcgagatcaagccattgcactcca-gcctgggcaacagagtgagactctgtctcaaaaaaaaaaaaaaa
s panTro4.chr3_GL389630_random     51467 226 +    103936 agttcaaaaccatcttggccaacatgttgaaaccccgtctctactaaaaatacaaaaaaaaattagtcaggtgtggtggcaggtgcctgtaatcccagctactcaggaagctgaggcaggagaatcacttgaagccaggaggcagaggttgcagtgagtcaagatcaagccattgcactcta-gcctgggcaacagagtgagactctgtctcaaaaaaaaaaaaaaa
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199739341 225 + 202140232 agttcaaaaccatcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaaaaa-ttagccaggtgtggtgtcaggtgcctataatcccagctactcaggaagctgaggcaggagaatcgcttgaagcaaggagacagaggttgcagtgagtcgagatcaagccattgcactcca-gcctgggcaacagagtgagactctgtctcaaaaaaaaaaaaaaa
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr2                     28109 221 + 192460366 agttcaaaaccatcctggccaacatggtgaaaccctgtct---ctaaaaatacaaaagaa--ttagccgggcgtggtggcaggcacctgtaatcccagctactcgggaggctgaggcaggagaatggcaggaacccgggaggtggagcttgcagcgaactgagatccggccactgcactcca-gcctgggcaacagagcgagactccgcctcaaaaaaaaaaaaaga
i macFas5.chr2                 C 0 I 7377
s papAnu2.chr2                     25840 222 - 187378091 agttcaaaaccattctggccaacatggtgaaaccccgtct---ctaaaaatacaaaagaa--ttagccgggcgtggtggcaggcacctgtaatcccagctactcaggaggctgagccaggagaatggcaggaacccgggaggtggagcttgcagcgaactgagatccggccactgcactccatgcctgggcaacagagcgagactctgcctcaaaaaaaaaaaaaga
i papAnu2.chr2                 C 0 I 7250
e mm10.chr16                    65405221 4922 -  98207768 I
e canFam3.chr33                 29041967 5697 +  31377067 I
e calJac3.chr17                   889764 9517 -  74750902 I
e chlSab2.chr15                   376542 7898 -  91754291 I
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=42602.000000
s hg38.chr3_KI270935v1_alt         90792 174 +    197351 aaaa-----gtaaaaaagaatttgaaggtgtaag-aaaaaagctctttatgaatctataagatgaacttctttcagcatacctaatacatctgtgtatttatgtgttgt-----tgtgtacacagtgttttgctactgaaaatatataaaagagctctaattaattggcttaagaaaataaaagc
s panTro4.chr3_GL389630_random     51693 179 +    103936 aaaaagaaagtaaaaaagaatttgaaggtgtaag-aaaaaagctctttatgaatctataagatgaacttctctcagcatacctaatacatctatgtatttatgtgttgt-----tttgtacacaatgttttgctactgaaaatatataaaagagctctaattaattggcttaagaaaataaaagc
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199739566 178 + 202140232 aa-------gtaaaaaagaatttgaaggtgtaagaaaaaaagctctttatgaatctataagatgaacttctttcagcatacctaatacatctatgtatttatgtgttgtgtacacatgtacacaatgttttgctactgaaaatatataaaagggctctaattacttggcttaagaaaataaaagc
i ponAbe2.chr3                 C 0 C 0
e mm10.chr16                    65405221 4922 -  98207768 I
e canFam3.chr33                 29041967 5697 +  31377067 I
e calJac3.chr17                   889764 9517 -  74750902 I
e chlSab2.chr15                   376542 7898 -  91754291 I
e macFas5.chr2                     28330 7377 + 192460366 I
e papAnu2.chr2                     26062 7250 - 187378091 I
e nomLeu3.chr11                120822326 8191 + 123690457 I

a score=1659.000000
s hg38.chr3_KI270935v1_alt         90966 2 +    197351 ac
s panTro4.chr3_GL389630_random     51872 2 +    103936 ac
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199739744 2 + 202140232 ac
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120830517 2 + 123690457 AT
i nomLeu3.chr11                I 8191 C 0
s macFas5.chr2                     35707 2 + 192460366 AT
i macFas5.chr2                 I 7377 C 0
s papAnu2.chr2                     33312 2 - 187378091 at
i papAnu2.chr2                 I 7250 C 0
e mm10.chr16                    65405221 4922 -  98207768 I
e canFam3.chr33                 29041967 5697 +  31377067 I
e calJac3.chr17                   889764 9517 -  74750902 I
e chlSab2.chr15                   376542 7898 -  91754291 I

a score=7896.000000
s hg38.chr3_KI270935v1_alt         90968 3 +    197351 ttg
s panTro4.chr3_GL389630_random     51874 3 +    103936 ttg
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199739746 3 + 202140232 ttg
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120830519 3 + 123690457 TTg
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            1369 3 +    111706 TTg
i rheMac3.chrUn_JH291127       N 0 C 0
s macFas5.chr2                     35709 3 + 192460366 TTg
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     33314 3 - 187378091 ttg
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   384440 3 -  91754291 TTg
i chlSab2.chr15                I 7898 C 0
e mm10.chr16                    65405221 4922 -  98207768 I
e canFam3.chr33                 29041967 5697 +  31377067 I
e calJac3.chr17                   889764 9517 -  74750902 I

a score=68639.000000
s hg38.chr3_KI270935v1_alt         90971 27 +    197351 gctgggtgcagtggctcatgcctgtac
s panTro4.chr3_GL389630_random     51877 27 +    103936 gctgggtgcagtggctcacgcctgtac
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199739749 27 + 202140232 gctgggtgcagtggctcacgcctgtac
i ponAbe2.chr3                 C 0 I 7739
s nomLeu3.chr11                120830522 27 + 123690457 gctgggcgtggtggctcacgcctgtaa
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            1372 27 +    111706 gccgggcgcggtggctcaggcctgtca
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     35712 27 + 192460366 gccgggcgcggtggctcaggcctgtca
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     33317 27 - 187378091 gccgggcgcggtggcataggcctgtca
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   384443 27 -  91754291 gccgggcgcagtggctcaggcctgtca
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   899281 27 -  74750902 gctgggcccggtggctcatgcctgtaa
i calJac3.chr17                I 9517 C 0
e mm10.chr16                    65405221 4922 -  98207768 I
e canFam3.chr33                 29041967 5697 +  31377067 I

a score=722571.000000
s hg38.chr3_KI270935v1_alt         90998 277 +    197351 tcccagcactttgggaggctgaggtaggtagatcacctgaggtcaggagtttgagactagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagcccgacgtggtggtgcgcgcctataatcccagctactccagaggctgaggcaggagaattgttggatcccgggaggaagaggtttcattgagctgagatctcattactgtacactccagcctgggtgacagagcaagactccatctcaa-----aaaaaaa---aaaag--------------aaGCTAG
s panTro4.chr3_GL389630_random     51904 274 +    103936 tcccagcactttgggaggctgaggtgggtagatcacctgaggtcaggagttcgagactagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagctgggcgtgatggtgcgcgcctgtaatcccagctactccagaggctgaggcaggagaattgtttgatcccgggaggaagaggtttcactgagctgagatctcattactgtacactccagcctgggtgacagagcaagacaccatctcaa-----aaaaaaa---aaaaG-----------------CTAG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199747515 287 + 202140232 tcccagcactttgggaggctgaggcaggtggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatgcaaaaattagccgggcgtggttgtgcacatctgtaatcccagctactccggaggctgaggcaggagaattgcttgataccgggaggaagaggtttcattgagctgagatctcactactgtacactccagcctgtgtgacagagcgagactccatctcaa-----aaaaaaa---aaaaa----aaaaaaaaaaaaGCTAG
i ponAbe2.chr3                 I 7739 C 0
s nomLeu3.chr11                120830549 272 + 123690457 tcccagcactttgggaggccaaggcaggcggatcacatgaggtcaggagttcgagacaagcctggccaacatggtgaaaccccgtctctactaaaaatataaaaattatccgggcgtggtggcacatgcctgtaatcccagctactcgggaggctgaggcaggagaattgcttgatcccaggaggaagaggtttcaatgagctgagatctcactactgtacactccagcctgggcaacagagcaagactccatgtcaa-----aaaaaaa---aaG-------------------CTAG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            1399 278 +    111706 tcccagcactttgggaggccaaggcgggcgaatcgcctgaggtcaggagttcaagacaagcctggccagcacggtgaaaccccgtctctaccataaatacgaaaa-tagctgggcgtggtggcg-gcgcctgtaatcccaaccgctcgggcggctgaggcaggagaatcgcttgaacccaggaggaagaggtttcagtgagctgagatctcactgctgtacactccagcctgggcgacagggcgagactccatctcaa-----aaacaaa---caaaa-----------aaaaaGCTAG
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     35739 279 + 192460366 tcccagcactttgggaggccaaggcgggcgaatcgcctgaggtcaggagttcaagacaagcctggccagcacggtgaaaccccgtctctaccataaatacgaaaattagctgggcgtggtggcg-gcgcctgtaatcccaactgctcgggcggctgaggcaggagaatcgcttgaacccaggaggaagaggtttcagtgagctgagatctcactgctgtgcactccagcctgggcgacagggcgagactccatctcaa-----aaacaaa---caaaa-----------aaaaaGCTAG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     33344 275 - 187378091 tcccagcactttgggaggccaaggcgggcggatcgcctgaggtcaggagttcaagacaagcctggccagcacggtgaaaccccgtctctaccataaatacgaaaattagccgggcgtggtggcg-gcacctgtgatcccaactgctcgggcggctgaggcaggagaatcgcttgaacccaggaggaagaggtttcggtgagccgagatctcactgctgtacactccagcctgggcgacagggcgagaccccatctcaa---------aaa---aaaaa-----------aaaaagctag
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   384470 285 -  91754291 tcccagcactttgggaggccaaggcgggcggatcgcctgaggtcaggagttcaagacaagcctggccagcatggtgaaaccccgtctctaccataaatacgaaaattagctgggcatggtggcgcacgcctgtaatcccaactactcgggtggctgaggcaggagaattgcttgatcccggggggaagaggtttcagtgagctgagatctcactgctgtacactccagcctgggcgacagagcgagactccatctcaaaaaaaaaaaaaa---aaaaa-----------aaaaaGCTAG
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   899308 285 -  74750902 tcccagcatttttggaggccaaagcaggc-aatcgc-tcaggtcaggaggttgagaacagcctggccaacatggtgacattttgt-------aaatataccaaaattagccaggcgtggtggcaggcatctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaacccaggaggcagaggtttcagtgagctgagatctcactactgtgcactccagcctgggcgacagagcgagactccatctcaa-----aaaaaaaccccaaaaccaaaaacaaCAGGAACCTAG
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65405221 4922 -  98207768 I
e canFam3.chr33                 29041967 5697 +  31377067 I

a score=1332470.000000
s hg38.chr3_KI270935v1_alt         91275 477 +    197351 TGATTCCATATCTTCAAATCAAATTTCAGTGGAGTGTTTACCGGGCAAGGAAGGCA-GGGGGGTCAGCTTG----CTGACAGCCTCAACCTGCCAGCCCTCAGCCTGCACATTTGTG----------------------ATCACCTGGTCACACACCTGGGCAGGAGGCTGC----CCCTCCTCCCTGGTTTGAGGAAGCAGGAAAAGGTACCCGCGAGAGACAGCCAGCAGTTCTGTGGAG--CAGCGGTGGCC--GGCTAG----GATGGGCTGTCTCTGGGGTCTGGCTCTGCCCCTTTTCTTCTTCTGCTGGGAGGTTGGGGTCTCTGGGAGCTCTGCAGGTAAGGAGGCCTAGAAGGGCCTGGTGGGCCTCTCCCCTAGTAGGGCTCTGGGAGTGAATTTCAGTATGAGCCACCCTTCATGGGCAAGGGCAGGCTCTCTCGGGTTGATTATAATGAACCACAGTGCTACTTGTGAAGTGCTATTATTGTTGATAAAGAGTGTGCAAATGAC
s panTro4.chr3_GL389630_random     52178 476 +    103936 TGATTCCATATCTTCAAATCAAATTTCAGTGGAGTGTTTACCAGGCAAGGAAGGCA-GGGGGGTCAGCTTG----CTGACAGCCTCAACCTGCCAGCCCTCAGCCTGCACATTTGTG----------------------ATCACCCGGTCACACACCTGGGCAGGAGGCTGC----CCCTCCTCCCTGGTTTGAGGAAGCAGGAAAAGGTACCCGCGAGAGACAGCCAGCAGTTCTGTGGAG--CAGCGGTGGCC--GGCTAG----GATGGGCTCTCTCTGGGGTCTGGCTCTGCCCCTTTTCTTCTTCTGCTGGGAGGTTGGGGTCTCTGGGAGCTCTGCAGGTAAGGAGGCC-AGAGGGGCCTGGTGGGCCTCTCCCCTAGGGGGGCTCTGGGAGTGAATTTCAGTATGAGCCACCCTTCATGGGCAAGGGCAGGCTCTCTCGGGTTGATTATAATGAACCACAGTGCTACCTGTGAAGTGCTATTATTGTTGATAAAGAGTGTGCAAATGAC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199747802 475 + 202140232 TGATTCCATATCTTCAAATCAAATTTCAGTGGAGTGTTTACCGGGCAAGGAAGGCA-GGGGGGTCAGCTTG----CTGACAGCCTCAACCTGCCAGCCCTCAGCCAGCACATTTGTG----------------------ATCACCTGGTCACACACCTGGGCAGGAGGCTGC----CCCTCCTCCCT-GTTTGAGGAAGCAGGAAAAGGTACCCGTGAGAGACAGCCAGCAGTTCTGTGGAG--CGGCGGTGGCT--GGCTAG----GATGGGCTGTCTCTGGGGTCTGGCTCTGCCCCTTTTCTTCTTCTGCTGGGAGGTTGGCGTCTCTGGGAGCTCTGCAGGTAAGGAGGCC-AGAGGGGCCTGGTGGGCCTCTCCCCTAGTGGGGCTCTGGGAGTGAATTTCAGTATGAGCCCCCATTCATGGGCAAGGGCAGGCTCTCTTGGGTTGATGATAATGAACCACAGTGCTACCTGTGAAGTGCTATTATTGTTGATAAAGAGTGTGCAAATGAC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120830821 476 + 123690457 TGATTCCATATCTTCAAATCAAATTTC-----AGTGTTTACTAGGCAAGGAAGGCAGGGGGGGTCAGCCTG----CTGACAGCCTCAACCTGCCAGCCCTCAGCCTGCACATTTGTG----------------------ATCACCTGGCCACACACCTGGGCAGGAGGCTGCCCCTCCCTCCTCCCTGGTTTGAGGAAGCAGGAAAAGGTACCCGTGAGAGACAGCCAGCAGTTCTGTGGGG--CAGCAGTGGCC--AACTAG----GATGGGCTGTCTCTGGGGTCTGACTCTGCTTCTTTTCTTCTTCTGCTGGGAGGTTGGGGTCCCTGGGAGCTCTGCAGGTAAGGAAGCC-AGAGGGGCCTGGTGGGCCTCTCCCCTAGTGGGGCTCTGGGAGGGAATTTCAGTATGAGCCACCCTTCACGGGCAAGGGCAGGCTCTCTCGGGTTGATTATAAGGAACCACAGGGCTACCTGTGAAGTGCTATTATTGATGATAAAAAGTGTGCAAATGAC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            1677 472 +    111706 TGATTCCACATCTTCAAATCAAATTTCAGCGGAGTGTTTACTGGGCAAGCAAGGCA--GGGGGTCAGCTTG----CTGACAGCCTCAACCTGCCAGCCCTCAGCCTGCACATTTGTG------TGGCCACATCCTGGCAACTAGCCAGTCACACACCTCGGCAGGAGGCGGC----CCCTCCTCCCTGGCTTGAGGAAGCAGGAAAAGGTACCCGT--GAGACGGCCAGCAGTTCTGC--AG--CGGCGGTGGCC--GGCTAG----GATGGGCTCTCTCTGGGGTCTGGCTCTGCCCCTTTTCTTCTTCTGCTGGGAGGTTGCGGTGTCTGAGATCTCTGCAGGTAAGGAGGCC-AGAGGGG-CTGGTGGGCCTCCCCCCTCGTGGGGCTCTGGGAGTGAATTTCAGTGT--------------GGGCAAGGGCAGGCTCTCTTGGGTTGGTGACAAGGAACCACAGTGCTACCTGTGAAGTGCCATCGTTGATGATAAAGAGTGTGCGGATGGC
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     36018 472 + 192460366 TGATTCCACATCTTCAAATCAAATTTCAGCGGAGTGTTTACTGGGCAAGCAAGGCA--GGGGGTCAGCTTG----CTGACAGCCTCAACCTGCCAGCCCTCAGCCTGCACATTTGTG------TGGCCACATCCTGGCAACTAGCCAGTCACACACCTCGGCAGGAGGCGGC----CCCTCCTCCCTGGCTTGAGGAAGCAGGAAAAGGTACCCGT--GAGACGGCCAGCAGTTCTGC--AG--CGGCGGTGGCC--GGCTAG----GATGGGCTCTCTCTGGGGTCTGGCTCTGCCCCTTTTCTTCTTCTGCTGGGAGGTTGCGGTGTCTGAGATCTCTGCAGGTAAGGAGGCC-AGAGGGG-CTGGTGGGCCTCCCCCCTCGTGGGGCTCTGGGAGTGAATTTCAGTGT--------------GGGCAAGGGCAGGCTCTCTTGGGTTGGTGACAAGGAACCACAGTGCTACCTGTGAAGTGCCATCGTTGATGATAAAGAGTGTGCGGATGGC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     33619 472 - 187378091 tgaTTCCACATCTTCAAATCAAATTTCAGCGGAGTGCTTACTGGGCAAGCAAGGCA--GGGGGTCAGCTTG----CTAACAGCCTCAACCTGCCAGCCCTCAGCCTGCATATTTGTG------TGGCCACATCCTGGCAACTAGCCAGTCACACACCTTGGCAGGAGGCGGC----CCCTCCTCCCTGGCTTGAGGAAGCAGGAAAAGGTACCCGT--GAGACGGCCAGCAGTTCTGC--AG--CAGCGGTGGCC--GGCTAG----GATGGGCTCTCTCTGGGGTCTGGCTCTGCCCCTTTTCTTCTTCTGCTGGGAGGTTGCGGTGTCTGAGATCTCTGCAGGTAAGGAGGCC-AGAGGGG-CTGGTGGGCCTCCCCCGTCGTGGGGCTCTGGGAGTGAATTTCAGTGT--------------GGGCAAGGGCAGGCTCTCTTGGGTTGATGACAAGGAACCACAGTGCTACCTGTGAAGTGCCATCGTTGATGATAAACAGTGTGCGGATGGC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   384755 471 -  91754291 TGATTCCACATCTTCAAATCAAATTTCAGCCGAGTGTTTACTGGGCCAGGAAGGCA---GGGGTCAGCTTG----CTGACAGACTCGACCTGCCAGCCCGCAGCCTGCACATTTCTG------TGGCCACATCCTGGCAACTAGCCAGTCACACACCTCGGCAGGAGATGGC----CCCTCCTCCCTGGCTTGAGGAAGCAGGAAAAGGTACCCGT--GAGACAGCCAGCAGTTCTGC--AG--TGGTGGTGGCC--GGCTAG----GATGGGCTCTCTCTGGGGTCTGGCTCTGCCCCTTTTCTTATTCTGCTGGGAGGTTGCGGTGTCTGAGATCTCTGCAGGTAAGGAGGCC-AGAGGGG-CTGGTGGGCCTCTCCCCTCATGGGGCTCTGGGAGTGAATTTCAGTGT--------------GGACAAGGGCAGGCTCTCTTGGGTTGATGACAAGGAACCACAGTGCTACCTGTGAAGTGCCATCGTTGATGATAAACAGTGTGTGGATGAC
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   899593 469 -  74750902 TGATTTCATATCTTCAAATCAAATTTCAGAGGAGAAATTACTGGGCAAGGAAGGCAGGGGGTGTTAGCTTG----CTGACAGCCCCAACCT-----------GCCTGTACGTTTCTGATCATCTGGCTACGTCTCGGAAACTCCCCAGTCACACACCTGGGCAGGAGGCTGC----CCCTCCTCTCCGGTTTAAGGAAGCAGGAAAAAG-------------CGGCCGGCCG-TCTGCGGAGACAGGCAGCGCCC-TGGCTAG----GATGGGCTCTCTCTGGGGTCTGGTTCTGCCCCTTTTCTTTTTCTGCTGGGAGGCTGGGGTCTCTGGGAGTGCTGCAGGTAAGGAGGCC-AGACTTC-CTGGTGGGCTTCTTCCCTAGTGGGGCTCCGGGAGTGAATTTCAGTATGGGCAGCCTTTCCTGGGC-AGGGTAGGCTCTC--AGGATGATTAGAATGAGCCACAGTGCTACACATAAAGTGCTATTACTGTT----CAGAGTGTGCAAATAAT
i calJac3.chr17                C 0 I 6
s mm10.chr16                    65410143 423 -  98207768 TGATGCCATATCTTCAAATCAGAG----------------------AGGCAAGGCA-TGGGAGTCAGGGTGGGGAGTGGGACCATGAACCTGCTG----TCAGCCTGCACATTTGTGGTCACCCGGCTGCCTCCTGGAACCTACCCAGT--CACACCTGGGCAGTCGTCTGC----CCCTCCTCCCGGGGTTGAGGAAGCAGGAAAGGGTGGTGAGGAGAGACAGCAGGCAGGTCCGGCAGA--CAGCGGTGGTCAGGGCCAGGCACGATGGGCTCTGTCTGGGGCCTGGCTGTGCCCCTCCTTGTCTTCTGCTGGAAGGTTGGCGTCAGTGTGAGCTCTCCAGGTAAGGAA--C-AGGACAG-CCCCCGGGGATCCTCCCTGGTGGAGCTCTGGG------TTTCAGTGC--------------TGGCAAAGACAGCTCTTTGTGGG-------CAAGGGA---------------------GACATTTTTGTTAAT------TGTATTAATGGC
i mm10.chr16                   I 4922 C 0
e canFam3.chr33                 29041967 5697 +  31377067 I

a score=-1797.000000
s hg38.chr3_KI270935v1_alt         91752 1 +    197351 -A
s panTro4.chr3_GL389630_random     52654 1 +    103936 -G
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199748277 1 + 202140232 -G
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120831297 1 + 123690457 -G
i nomLeu3.chr11                C 0 I 116
s rheMac3.chrUn_JH291127            2149 1 +    111706 -G
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     36490 1 + 192460366 -G
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     34091 1 - 187378091 -G
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   385226 1 -  91754291 -G
i chlSab2.chr15                C 0 C 0
s mm10.chr16                    65410566 1 -  98207768 C-
i mm10.chr16                   C 0 C 0
e canFam3.chr33                 29041967 5697 +  31377067 I
e calJac3.chr17                   900062 6 -  74750902 I

a score=110.000000
s hg38.chr3_KI270935v1_alt         91753 2 +    197351 -GT
s panTro4.chr3_GL389630_random     52655 2 +    103936 -GT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199748278 2 + 202140232 -GT
i ponAbe2.chr3                 C 0 I 172
s nomLeu3.chr11                120831414 2 + 123690457 -GT
i nomLeu3.chr11                I 116 C 0
s calJac3.chr17                   900068 2 -  74750902 -GT
i calJac3.chr17                I 6 C 0
s mm10.chr16                    65410567 2 -  98207768 GG-
i mm10.chr16                   C 0 C 0
e rheMac3.chrUn_JH291127            2150 0 +    111706 C
e canFam3.chr33                 29041967 5697 +  31377067 I
e chlSab2.chr15                   385227 0 -  91754291 C
e macFas5.chr2                     36491 0 + 192460366 C
e papAnu2.chr2                     34092 0 - 187378091 C

a score=4968.000000
s hg38.chr3_KI270935v1_alt         91755 7 +    197351 GTGAGTG
s panTro4.chr3_GL389630_random     52657 7 +    103936 GTGAGTG
i panTro4.chr3_GL389630_random C 0 I 1117
s ponAbe2.chr3                 199748452 7 + 202140232 GTGAGTG
i ponAbe2.chr3                 I 172 C 0
s nomLeu3.chr11                120831416 7 + 123690457 GTGAGCG
i nomLeu3.chr11                C 0 C 0
s calJac3.chr17                   900070 7 -  74750902 ATCAGTG
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65410569 7 -  98207768 AGGAATA
i mm10.chr16                   C 0 C 0
e rheMac3.chrUn_JH291127            2150 0 +    111706 C
e canFam3.chr33                 29041967 5697 +  31377067 I
e chlSab2.chr15                   385227 0 -  91754291 C
e macFas5.chr2                     36491 0 + 192460366 C
e papAnu2.chr2                     34092 0 - 187378091 C

a score=30207.000000
s hg38.chr3_KI270935v1_alt         91762 41 +    197351 --TAAGCGTGCATGGCGCTGCAGTACACACTAATCAACCATGA
s panTro4.chr3_GL389630_random     53781 41 +    103936 --TAAGCGTGCATGGCACTGCAGTACACACTAATCAACCATGA
i panTro4.chr3_GL389630_random I 1117 C 0
s ponAbe2.chr3                 199748459 41 + 202140232 --TAAGTGTGCATGGCGCTGCAGTACACACTAATCAACCATGA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120831423 41 + 123690457 --TAAGCGTGCCTGGCGCTGCAGTACACACTAATCAACCATGA
i nomLeu3.chr11                C 0 C 0
s calJac3.chr17                   900077 41 -  74750902 --TAAGCGTGCATGGCGCCGCAGCACACACAAATAAACCGTGA
i calJac3.chr17                C 0 T 56
s mm10.chr16                    65410576 21 -  98207768 GACGAGTGTGC-TGGC-TGGCAG--------------------
i mm10.chr16                   C 0 C 0
e rheMac3.chrUn_JH291127            2150  0 +    111706 C
e canFam3.chr33                 29041967 5697 +  31377067 I
e chlSab2.chr15                   385227  0 -  91754291 C
e macFas5.chr2                     36491  0 + 192460366 C
e papAnu2.chr2                     34092  0 - 187378091 C

a score=711546.000000
s hg38.chr3_KI270935v1_alt         91803 283 +    197351 CGATGTGTGTGAGTGTAAGCGTG-----CCTGGCGCTGCAGTACACGCTAATCAACCATGACGCTGCCATCGTAAGGGATGGCTGAGAGTTTGTCTTTATGAACGTGGGACAGTAAGTGGGGCACGGAGCGGGGGTGCAGGGAGGTGCCAGCTGGTGATCATTGTGCAGAAAGCTGAAGAATGTGGCTTAACAAGATTCTGACTCCTCCCAGTTTATTACCTAGCATGGATTTCCTTCAAAATACAGATTTCGTGTGAAAAGTCCAACTGCCACAAACTGCTTGGGAA
s panTro4.chr3_GL389630_random     53822 283 +    103936 CGGTGTGTGTGAGTGTAAGCATG-----CCTGGCGCTGCAGTACACACTAATCAACCATGACGCTGCCATCGTAAGGGGTGGCTGAGAGTTTGTCTTTATGAACGTGGGACAGTAAGTGGAGCACGGAGCGGGGGTGCAGGGAGGTGCCAGCTGGTGATCATTGTGCAGAAAGCTGAAGAATGTGGCTTAACAAGATTCTGACTCCTCCCAGTTTATTACCTAGCATGGATTTCCTTCAAAATACAGATTTCGTGTGAAAAGTCCAACTGCCACAAACTGCTTGGGAA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199748500 283 + 202140232 TGGTGTGTGTGAGTGTAAGTGTG-----CCTGGCACCGCAGTATACACTAATCAACCATGACGCTGCCATCATAAGGGGTGGCTGAGAGTTTGTCTTTATGAATGTGGGAGAGTAAGTGGGGCATGGAGCGGGGGTGCAGGGAGGTGCCAGCTGGTGATCATTGTGCAGAAAGCTGAAGAATGTGGCTTAACAAGATTCTGACTCCTCCAAGTTTATTACCTAGCATGGATTTCCTTTAAAATACAGATTTTGTGTGAAAAGTCCAATTGCCACAAACTGCTTGGGAA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120831464 283 + 123690457 CGGTGTGTGTGAGCGTAAGGGTG-----CCTGGCGCTGCAGTACACACTAATCAACCATGACGCTGCCATCGTAAGGGGTGGCTGAGAGTTTGTCCTTATGAACGTGGGAGAGTAAGTGGGGCACAGAGCCGGGGTGCAGGGAGGTGCCAGCTGGTGATCATTGTGCAGAAAGCTGAAGAATGTGGCTTAACAAGATTCTGACTCCTCCAAGTGTATTACCTAGCATGGATTTCCTTCAAAATACAGATTTCGTGTGAAAAGTCCAACTGCCACAAACTGCTTGGGAA
i nomLeu3.chr11                C 0 T 90437
s rheMac3.chrUn_JH291127            2150 249 +    111706 ----GTGTGTGAGTGTAAGCCTG-----CCTGG----------------------------CGCTGCCATGGTGAGAGGTGGCTGAGAGTCTGCCTTTATGAACGT-GGAGAGTGAGTGGGGTGGGGAG-GTGGGTGCAGGGAGGTGCCAGCTGGCGATCATTGTGCAGAAAGCTGAAGAATGTGGCTCAACAAGATTCGGACTCCTCCAAGTTTATTACCTGGCATGGATTTCCTTCAAAATACAGATTCCGAGTGAAAAGTCCGACTACCACAAACTGCTTGGGAA
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     36491 249 + 192460366 ----GTGTGTGAGTGTAAGCCTG-----CCTGG----------------------------CGCTGCCATGGTGAGAGGTGGCTGAGAGTCTGCCTTTATGAACGT-GGAGAGTGAGTGGGGTGGGGAG-GTGGGTGCAGGGAGGTGCCAGCTGGCAATCATTGTGCAGAAAGCTGAAGAATGTGGCTCAACAAGATTCGGACTCCTCCAAGTTTATTACCTGGCATGGATTTCCTTCAAAATACAGATTCCGAGTGAAAAGTCCGACTACCACAAACTGCTTGGGAA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     34092 249 - 187378091 ----GTGTGTGAGTGTAAGCCTG-----CCTGG----------------------------CGCTGCCATGGTGAGAGGTGGCTGAGAGTCTGCCTTTAAGAACGT-GTAGAGTGagtggggcagggag-gtgggtgCAGGGAGGTGCCAGCTGGCGATCATTGTGCAGAAAGCTGAAGAATGTGGCTCAACAAGATTCGGACTCCTCCAAGTTTATTACCTGGCATGGATTTCCTTCAAAATACAGATTCCGAGTGAAAAGTCCGACTACCACAAACTGCTTGGGAA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   385227 249 -  91754291 ----GTGTGTCAGTGTAAGCCTG-----CCTGG----------------------------CGCTGCCATGGTGAGAGGTGGCTGAGAGTCTGCCTTTATGAACGT-GGAGAGTGAGTGGGGCGGGGAG-GTGGGTGCAGGGAGGTGCCAGCTGGCGATCATTGTGCAGAAAGCTGAAGAATGTGGCTCAACAAGATTTGGACTCCTCCAAGTTTATTACCTGGCATGGATTTCCTTCAAAATACAGATTCCGAGTGAAAAGTCCGACTACCACAAACTTCTTGGGAA
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   900062 258 -  74750902 TGGTTTGTATCAGTGTAAGCGTG-----CATGGCGCCGCAGCACACACAAATAAACCGTGACGCTGCCATTGCACGGGGTTGCTG-----------TTA-GAATGT-------------GGGCGAGGAAGCGGGGTGCAGGGAGGGGCCGGCTGGTCATCATTTTGCAGACAGCTGAAGAATGCGGCTTAACAACATTCTAACTCCTCGAAGTTTATTACCTGGCATGGATCTCCTTCAAAATACAGATTTCGTGCGAAAAGGTCGACTGTCACAGACTGCTGGGGAA
i calJac3.chr17                T 56 C 0
s mm10.chr16                    65410597 217 -  98207768 ----ATGGGTCAGCTTACACATGGTGGCCCTGT----------------------------GGCCATCACTGTAAGGGA-GTCTGGGAGTCACTCTTTAGTCATG--GGATAGTGGG--GTGGAGGGAG-GAGGGGCTTGGGAGATGCCAGCTGGTGATCATTTTA-----------------------------GCTCTGCTCCCTCCAACATCGTTACCTAGCCCAGCTGTTCTTTGAAATTTGCCTTTTGAATGAAAAGT----TTGTCACAAACTGCTTGGGCG
i mm10.chr16                   C 0 C 0
e canFam3.chr33                 29041967 5697 +  31377067 I

a score=320098.000000
s hg38.chr3_KI270935v1_alt         92086  99 +    197351 GGGTGGATGCT--GACAGGCAGGGCTTTTGTGAAAGACGGGAATGAACCCTGACCTGTCGCTAATAGGAGTTGTGCCAAACTCATCACATACA----TTAAAAAA
s panTro4.chr3_GL389630_random     54105  99 +    103936 GGGTGGATGCT--GACAGGCAGGGCTTTTGTGAAAGACGGGAATGAACCCTGACCTGTCGCTAATAGGAGTTGTGCCAAACTCATCACATACA----TTAAAAAA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199748783  99 + 202140232 GGGTGGATACT--GAGAGGCAGGGCTTTTGTGAAACATGGGAATGAACACTGACCTGTCGCCAACAGGAGTTGTGCCAAACTCATCACATACA----TTAAAAAA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120741310  99 + 123690457 GAGTGGATGCT--GAGAGGCAGGGCTTTTGTGAAAGACGGGAACGAACCCTGACCTGTCGTTAATAGGAGTTGTGCCAAACTCATCACATACA----TTAAAAAC
i nomLeu3.chr11                T 90437 C 0
s rheMac3.chrUn_JH291127            2399  99 +    111706 GGGTGGATGCT--GAGAGGCAGGGCTTTTGTGAAAGATGGGAAGGAACCCTGACCTGTCGTTAATAGGAGCTGTGCCAAACTCATCACATACA----TTAAAAAA
i rheMac3.chrUn_JH291127       C 0 I 341
s macFas5.chr2                     36740  98 + 192460366 GGGTGGATGCT--GAGAGGCAGGGCTTTTGTGAAAGATGGGAAGGAACCCTGACCTGTCGTTAATAGGAGCTGTGCCAAACTCATCACATACA----TTAAAAA-
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     34341  99 - 187378091 GGGTGGATGCT--GAGAGGCAGGGCTTTTGTGAAAGACGGGAAGGAACCCTGACCTGTCGTTAATAGGAGCTGTGCCAAACTCATCACATACA----TTAAAAAA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   385476  99 -  91754291 GGGTGGATGCT--GAGAGGCAGGGCTTTTGTGAAAGACGGGAACGAACCCTGACCTGTCGCTAATAGGAGCTGTGCCAAACTCATCACATACG----TTAAAAAA
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   900320 100 -  74750902 GGGTGAATGCT--GAGAGGCAGGGCTTCTGAGAAAGACGGGAACTAACACTGATCTGTGACTGAT---ACTTGTGTCAAACTAATCACATACATTTTTTAAAAAA
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65410814  99 -  98207768 -GGGAGATTCTGAGAGAGGCA-GACTTTTCTGAAAGATGGGAGCTAACCGTGATCTGTTACTAACTGGCACTGTGCCAAACCTATCACACACA----CTTTAAaa
i mm10.chr16                   C 0 C 0
e canFam3.chr33                 29041967 5697 +  31377067 I

a score=2500.000000
s hg38.chr3_KI270935v1_alt         92185 3 +    197351 TAG
s panTro4.chr3_GL389630_random     54204 3 +    103936 TAG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199748882 3 + 202140232 TAA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120741409 3 + 123690457 TAA
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     36838 2 + 192460366 -AG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     34440 1 - 187378091 --g
i papAnu2.chr2                 C 0 C 0
s calJac3.chr17                   900420 3 -  74750902 GAG
i calJac3.chr17                C 0 I 93
s mm10.chr16                    65410913 3 -  98207768 tag
i mm10.chr16                   C 0 C 0
e rheMac3.chrUn_JH291127            2498 341 +    111706 I
e canFam3.chr33                 29041967 5697 +  31377067 I
e chlSab2.chr15                   385575 0 -  91754291 C

a score=1875.000000
s hg38.chr3_KI270935v1_alt         92188 4 +    197351 AAAA
s panTro4.chr3_GL389630_random     54207 4 +    103936 AAAA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199748885 4 + 202140232 AAAA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120741412 4 + 123690457 AAAA
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     36840 4 + 192460366 GGGG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     34441 4 - 187378091 gggg
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   385575 4 -  91754291 GGGG
i chlSab2.chr15                C 0 C 0
s mm10.chr16                    65410916 4 -  98207768 ataa
i mm10.chr16                   C 0 I 1607
e rheMac3.chrUn_JH291127            2498 341 +    111706 I
e canFam3.chr33                 29041967 5697 +  31377067 I
e calJac3.chr17                   900423 93 -  74750902 I

a score=17151.000000
s hg38.chr3_KI270935v1_alt         92192 16 +    197351 GGA-----TTTATTTTTTTTT
s panTro4.chr3_GL389630_random     54211 16 +    103936 TGA-----TTTATTTattttt
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199748889 21 + 202140232 GGATTTATTTTATTTAtttat
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120741416 16 + 123690457 GGA-----TTTATTTAtttat
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     36844 16 + 192460366 GGA-----TTTGttttatttt
i macFas5.chr2                 C 0 I 1239
s papAnu2.chr2                     34445 16 - 187378091 gga-----tttgttttacttt
i papAnu2.chr2                 C 0 I 37
s chlSab2.chr15                   385579 16 -  91754291 GGA-----tttattttatttt
i chlSab2.chr15                C 0 I 27
e rheMac3.chrUn_JH291127            2498 341 +    111706 I
e mm10.chr16                    65410920 1607 -  98207768 I
e canFam3.chr33                 29041967 5697 +  31377067 I
e calJac3.chr17                   900423 93 -  74750902 I

a score=11999.000000
s hg38.chr3_KI270935v1_alt         92208 14 +    197351 T----------AGTTCTATGCTCC
s panTro4.chr3_GL389630_random     54227 24 +    103936 ttttttagagcagttctatgctcg
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199748910 24 + 202140232 ttttttagagcagttctaggttcg
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120741432 24 + 123690457 ttgtttagagcagttctaggttca
i nomLeu3.chr11                C 0 C 0
s papAnu2.chr2                     34498 14 - 187378091 ----------cagTTCTAGGTTTG
i papAnu2.chr2                 I 37 C 0
s chlSab2.chr15                   385622 14 -  91754291 ----------cagttctaggtttg
i chlSab2.chr15                I 27 C 0
e rheMac3.chrUn_JH291127            2498 341 +    111706 I
e mm10.chr16                    65410920 1607 -  98207768 I
e canFam3.chr33                 29041967 5697 +  31377067 I
e calJac3.chr17                   900423 93 -  74750902 I
e macFas5.chr2                     36860 1239 + 192460366 I

a score=34035.000000
s hg38.chr3_KI270935v1_alt         92222 20 +    197351 CTCTAAACCTCGAGTGGAGA
s panTro4.chr3_GL389630_random     54251 20 +    103936 ctctaaacctcgagtggaga
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199748934 20 + 202140232 ctctaaacctccagtggaga
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120741456 20 + 123690457 ctctaaacctcgagtggaga
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            2839 19 +    111706 ctctaaaccttgagtggag-
i rheMac3.chrUn_JH291127       I 341 C 0
s papAnu2.chr2                     34512 20 - 187378091 CTCTAAACCTTGAGtggaga
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   385636 20 -  91754291 ctctaaaccttgagtggaga
i chlSab2.chr15                C 0 C 0
e mm10.chr16                    65410920 1607 -  98207768 I
e canFam3.chr33                 29041967 5697 +  31377067 I
e calJac3.chr17                   900423 93 -  74750902 I
e macFas5.chr2                     36860 1239 + 192460366 I

a score=146912.000000
s hg38.chr3_KI270935v1_alt         92242 66 +    197351 ggccgggcgtggtggctcacacctgtaatcccagcattttgggaggctgaggtgggtggatcacct
s panTro4.chr3_GL389630_random     54271 66 +    103936 ggccgggcacggtggctcacacctgtaatcccagcattttgggaggccgaggtgggcggatcacct
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199748954 66 + 202140232 ggttgggtgtggtggctcacacctgtaatcccagcactttgggaggccgaggtgggcggatcacct
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120741476 66 + 123690457 ggctgggtgcagtggctcacacctgtaatcccagcattttgggaggctgaggcgggcggatcacct
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            2858 66 +    111706 ggccgggtgcagtggctcacacctgtaatcccagcattttgggaggccaaggcgggcagatcacct
i rheMac3.chrUn_JH291127       C 0 C 0
s papAnu2.chr2                     34532 66 - 187378091 ggccgggtgcagtggctcacacctgtaatcccagcattttgggaggccaaggcgggcggatcacct
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   385656 66 -  91754291 ggccaggtgcagtggctcacacctgtaatcccagcattttgggaggccaaggcgggtggatcacct
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   900516 66 -  74750902 ggtcaggggcagaggctaacgcttgtaatcccagcacttttagaggccggggcatgtggatcacct
i calJac3.chr17                I 93 C 0
e mm10.chr16                    65410920 1607 -  98207768 I
e canFam3.chr33                 29041967 5697 +  31377067 I
e macFas5.chr2                     36860 1239 + 192460366 I

a score=597425.000000
s hg38.chr3_KI270935v1_alt         92308 227 +    197351 gaggtcaggagttcgagaccagcctgaccaacatggagaaaccccgtctctactaaaaatac-aaaattagccgggggtggtagcaggtgcctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaacctgggaggtggagtttgcagtgagctgagatcgcacccttgcgctctggc--------ctgggcaacaaaagtgaaactatgttt--caaaaaaaaa------------aa
s panTro4.chr3_GL389630_random     54337 225 +    103936 gaggtcaggagttcgagaccagcctgaccaacatggagaaaccccgtctctactaaaaatat-aaaattagccgggggtggtagcaggtgcctgtaatcccacctactcgggaggctgaggcaggagaattgcttgaacctgggaggtggagtttgcagtgagctgagatcgcaccattgcactctggc--------ctgggcaacaagagtgaaactatgttt--caaaaaaaaa--------------
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199749020 228 + 202140232 gaggttgggagttcgagactagcctgaccaacatggagaaaccccatctctactaaaaatac-aaaattagccaggtgtggtagcaggtgcctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaacctgggaggtggaggttgcagtgagctgacattgcaccactgcactgcagc--------ctgggcaacaaaagtgaaactctgttt--caaaaaaaaa-----------aaa
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120741542 228 + 123690457 gaggtcgggagttggagaccagcctgaccaacatggagaaaccccgtctctactaaaaatac-aaaattagccgggtgtggtagcaggtgcctgtaatcccagctacttgggaggctgacgcaagagaattgcttgaacctgggaggtgggggttgcagtgagctgagatcttgccattgcactctggc--------ctgggcaacaaaagtgaaactctgttt--caaaaaaaaa-----------aga
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            2924 238 +    111706 gaggtcaggagtttgagaccagcctgaccaacatggagaaaccccgtctctactaaaaatac-aaaattagcgggatgtggtagcagctgcctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaacctgggaggtggaggttgcagcgagccaagatcacgccactgcactccagc--------ctgggcaac-agagtgaaac--tttttaaaaaaaaaaaaacaaaaaaacaaaa
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     38099 236 + 192460366 gaggtcaggagtttgagaccagcctgaccaacatggagaaaccccgtccctactaaaaatac-aaaattagcgggatgtggtagcagctgcctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaacctgggaggtggaggttggagcgagccaagatcacgccactgcactccagc--------ctgggcaac-agagtgaaac--tgttt--aaaaaaaaaaacaaaaaaacaaaa
i macFas5.chr2                 I 1239 C 0
s papAnu2.chr2                     34598 224 - 187378091 gaggtcaggagtttgagaccagcctgaccaacatggagaaaccccgtccctactaaaaatac-aaaattagcgggatGTGGtagcagctgcctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaacctgggaggtggaggttgcagtgagccaagatcacgccactgcactctagc--------ctgggcaac-agagtgaaac--tgttt--aaaaaaaa------------aaaa
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   385722 234 -  91754291 gaggtcaggagtttgagaccagcctgaccaacatggagaaaccccgtctctactaaaaatac-aaaattagcgggatgtggtagcagctgcctgtaatcccagctactcaggaggctgaggtaggagaattgcttgaacctgggaggtggaggttgcagtgagccaagatcacgccactgcactccagcccactgcactgggcaac-agagtgaaac--tgttt--aaaaaaaaaa----------aaaa
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   900582 228 -  74750902 gaggtctggaattcgagaccagcctgaccaacccggtgaaaccccatctgtactaaaaatgcaaaaattagccggccatggtggcgcgtgcctgtaatgccagctacttgggaggctgaggcgggagaatcacctgaacccaggaggtggaggttgcggtgagccgtgattgcgtcactgcactccagc--------ctgctcaaaaagaatgaaacttcatct--caaaaaaata-----------aa-
i calJac3.chr17                C 0 I 22
e mm10.chr16                    65410920 1607 -  98207768 I
e canFam3.chr33                 29041967 5697 +  31377067 I

a score=642653.000000
s hg38.chr3_KI270935v1_alt         92535 295 +    197351 aGCTGCAGTGGAGAGTCTGGAGTTcccatccccaccactcacagcctcccccatcatcagcgtcccccaccagagtggcacatttgataggactgaggaacctactttgatgcatcattatcatacaTtgtatttttaatcctcacaacggccctgcaagatcggccctgtttttaccaccCCCCACCTCCACTGCTTTAAGGGTGAGGCCACTGTGCTTCTGGGCATCCAGTAACAACTCCTCGGAGCCAGAATCTGACTCCTCACAGGCCTGAGCACTGCACCCCGTGGCCTC
s panTro4.chr3_GL389630_random     54562 294 +    103936 -gctgcagtggagagtctggagttcccatccccaccactcacagcctcccccatcatcagcatcccccaccagagtggcacatttgttaggactgaggaacctactttgacccatcattatcatacaTTGTATTtttaattctcacaacggccctgcaagatcggccctgttcttaccaCCCACCACCTCCACTGCTTTAAGGGTGAGGCCACTGTGCTTCTGGGCATCTAGTAACAACTCCTCGGAGCCAGGATCTGACTCTCCACAGGCCTGAGCACTGCACCCCATGGCCTC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199749248 294 + 202140232 aactggagtgaagagtatggaattcccatccccaccactcacagcctcccccatcatcaacgt-ccccaccagagtggcacatttgttaggactgaggaatctactttgacacatcattatcaTACATTATATTTTTAATCCTCACGATGACCCCACAAGATCGGCCCTGTTCTTACCACCCCCCACCTCCACTGCTTTAAGGACGGGGCCACTGTGCTTCTGGGGATCCAGTAACAACTCCTCGGAGCCAGGATCTGACTCCACACAGGCCTGAGCACTGCACCCCGCGGCCTC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120741770 293 + 123690457 aactggagtggagagtatggagttcccatccccaccactcacagcctcccccatcatcgacgtcccccaccagagtggcacatttgttaggaccgaggaatctactttgacacagcattatcatacaTTATATTTTTAACCCTCACAATGGCCCTCCAAGATCCGCCCTGTTCTTACCACCCCCCACCTCCACTGCTTTAAGGATGAGGCCACTGTGCTTCTGGGGATCCAGTAAGAACTC--CGGAGCCAGGATCTGACTCCACACAGGCCTGAGAACTGCACTCCGCGGCCTC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            3162 293 +    111706 aacttgagcagagagtatcgagttcccatccccaccacttacagcctcccccatcatcaacatcccccaccagagtggcacgtttgttaggactgaggaacctactttgatgcatcattatcatacattatatttttaaccctcacaatggccctacaagat-gaccctgctctgaccaccccgga-ctccactgctttaaggatgaggccactgtgcttctggggatccagtgactCCTCCTCGGAGCCAGGATCTGACTCCACACAGGCCTGAGCACTGCACGCCTCAGCCTC
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     38335 293 + 192460366 aaCttgagcagagagtatcgagttcccatccccaccacttacagcctcccccatcatcaacatcccccaccagagtggcacgtttgttaggactgaggaacctactttgatgcatcattatcaTACATTATATTTTTAACCCTCACAATGGCCCTACAAGTT-GACCCTGTTCTGACCACCCCCGA-CTCCACCGCTTTAAGGATGAGGCCACTGTGCTTCTGGGGACCCAGTGACTCCTCCTCGGAGCCAGGATCTGACTCCACACAGGCCTGAGCACTGCACGCCTCGGCCTC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     34822 295 - 187378091 aaattgagcagagAGTATCGAGTTCCCATCCCCACCACTTACAGCCTCCCCCATCATcgacatcccccaccagagtggcacGTTTGTTAGGATTGAGGAACCTACTTTGATGCATCATTAtcatacattatatttttaacccTCACAATGGCCCTACAAGATGGGCCCTGTTCTTACCACCCCCGACCTCCACTGCTTTAAGGATGAGGCCACTGTGCTTCTGGGGATCCAGTGACTCCTCCTCGGAGCCAGGATCTGACTCCACACAGGCCTGAGCACTGCACGCCGCGGCCTC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   385956 289 -  91754291 aacttgagcggagagtatcgagttcccatccccaccacgtacagcctctgc---catcgacatcccccaccagagcagcacgtctgttaggactgaggaacctactttgatgcatcattatcGTATA--GTATTTTTAACCCTCACAATGGCCCTACAAGAT-GACCCTGTTCTGACCACCCCCGACCTCCACTGCTTTAAGGATGAGGCCACTGTGCTTCTGGGGATCCAGTGACGACTCCTCGGAGCCAGGCTCTGACTCCACACAGGCCTGAGCGCTGCACGCCGCGGCCTC
i chlSab2.chr15                C 0 C 0
e mm10.chr16                    65410920 1607 -  98207768 I
e canFam3.chr33                 29041967 5697 +  31377067 I
e calJac3.chr17                   900810  22 -  74750902 I

a score=2920266.000000
s hg38.chr3_KI270935v1_alt         92830 1210 +    197351 CTGCCTGTGCTCACCGTGGCCTGGTCTGCGCTGCACGT-------------GTCCCGttagctccaccttacaggtgcggaaatgcaggcttggagctgagagacttggccagggtcacagggc---------agagagcagattctccaactcagggtcccaagtccacacgctttcctctccacca----gattTGAAGATTGTACCAGGAGAGCCGCAGTGTTCCAGAGCTACTGAGGGGCTGGGCTGGGATTTGCTGTATTCGAGAAGACCCCCTT------------------------------GGACCC---------------GAGAGGCTGTGGGCTTGGGGAGCATGAGGAGGTTTCACAGCAGAAAGGACACCCCGGGGCTCCTGGATAAGCCAGAAAATGTGCCAGGGGA-------AGTCGGGCTCCAAGGGCACCACTCT--GGGCTTCCAGCTGTGTGGGCT-------------------------------GGACCAAGAAGGCTCAAAGAAATGATCTCAGG-CTTGAAGTGGGGAGAAGAAACTGTATTATGAAGGCAGACGAACAGTTCCTGCAAAAGTGAGATTTGTGTGTGCAGCTGGGCCGCACTGGACCAGGGATGAGAGTGGGTGCCCGGGACTCGCCTATACTGCCTGGGGGTGCAGCCCGCACTCCTCACTATAGTCAGATCAACTATGCGTGCTTTCCAGTGGCCTGGGAGAGGACTCCAT-AGGGAGGGATGCTTA------CCTTGTGGGCTTTGGAATATaag------ccctttcaccttctccgctggtcctcatcacgttggcaaggcaggtat----tgtgaccctgttttctcaggtgaggacatggaggctgggaggggtctagagactggcctggctagtaggaggctgagtcaggatttgaaccagcagatcatctgaccccggagccagtCGTGGGCGGCACAGCGGGAGCTGCAACCGAGGCTCTTGACTCCTGCGTCG----TCATTCCCT-------GAGGTCCACAGGACAACCAGTTGGGGACCTGGGGCCCCATCCTGATGCCCTGGGGAGA------GGTGCTAGGCCCCTTT-TGGGTCTATGGGCTACTTTTGGGCCAGTGGAGCTGGGTAAAGACCATCTCAAACCCTGTGCCAGGGGAGGTCAGACTCCAAGAGCGCCACCTTTGGGCTTCCAGCTGTGTAGGCTGGACCAAGAAGGCTCAGAG-AATTAGGGGGTTCGTA-TTTGATCCTTTTCCTTCCAAGACtgggattaccagataaaacacagggcatccagttacatttgaatttcaggtaacaa----------ttttttt-
s panTro4.chr3_GL389630_random     54856 1206 +    103936 CTGCCCGTGCTCACCATGGCCTGGTCTGCGCTGCACGT-------------GTCCCGttagctccaccttacaggtgcggaaatgcaggcttggagctgagagacttggccagggtcacagggc---------agagagcagattctccaactcagggtcccaagtccacacgctttcctctccacca----gattTGAAGATTGTACCAGGAGAGCCGCAGTGTTCCAGAGCTACCGAGGGGCTGGGCCGGGATTTGCTGTATTTGAGAAGACCCCCCT------------------------------GGACCC---------------GAGAGGCTGTGGGCTTGGGGAGCATGAGGAGGTTTCACAGCAGAAAGGACACCCCGGGGCTCCTGGAT----CGGAAAATGTGCCAGGGGA-------AATCGGGCTCCAAGGGCACCACTCT--GGGCTTCCAGCTGTGTAGGCT-------------------------------GGACCAAGAAGGCTCAGAGAAATGATCTCAGG-CTTGAAGTGGGGAGAACAAACTGTATTATGAAGGCAGACGAACAGTTCCTGCAAAAGTGAGATTTGTGTGTGCAGCTGGGCCGCACCGGACCAGGGATGAGAGTGGGTGCCCGGGACTCGCCTACACTGCCTTGGGGTGCAGCCCGCACTCCTCACTATAGTCAGATCGACTATGCGTGCTTTCCAGGGGCCCGGGAGAGGACTCCAT-GGGGAGGGATgctta------ccttgtgggctttggaatataag------ccctttcaccttctccgctggtcctcaccacgttggcaaggcaggtat----tgtgaccctgttttctgaggtgaggacatggaggctgggaggggtctagagactggcctggctagtaggaggccgagtcaggatttgaaccagcagatcatctgaccccagagccggtCGTGGGCGGCACAGCGGGAGCTGCAACCGAGGCTCTTGACTCCTGCCTCG----TCATTCCCT-------GAGGTCCACAGGACAACCAGCTGGGGACCTGGGGCCCCATCCTGACATCCTGGGGAGA------GGTGCTAGGCCTCTTT-TGGGTCTATGGGCTACTTTTGGGCCAGTGGAGCTGGGTAAAGACCATCTCAAACCCTGTGCCAGGGGAGGTCAGACTCCAAGAGCGCCACCTTTGGGCTTCCAGCTGTGTGGGCTGGACCAAGAAGGCTCAGAG-AATTAGGGGGTTCGTA-TTTGATCCTTTTCCTTCCAAGACtgggattaccagataaaacacagggcatccagttacatttgaatttcaggtaacaa----------ttttttt-
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199749542 1212 + 202140232 CTGCCTGTGCTCACCATGGCCTGGTTTGCGCTGCACGT-------------GTCCCGTGAGctccactttgcaggtgcggaaatgcaggcttggagctgagagacttggccagggtcacagggc---------agagagcagattctccacctcagggtcccaagtccacacgctttcctctccacca----gattTGAAGATTGTACCAGGAGAGCCGCAGTGTTCCAGAGCTACCGAGGGACTGGGTCGGGCTTTGCTGTATTTGAGAAGACCCCCCT------------------------------GGACCC---------------GAGAGGCTGTGGGCTTGGGGAGCATGAGGAGGTTTCACAGCAGAAAGGACACCCCGGGGCTACCGGACAAGCCGGAAAATGTGCCAGGGGA-------AGTCAGGCTCCAAGGGCACCACTCT--GGGCTTCTAGCTGTGTGGGCT-------------------------------GGACCAAGAAGGCTCAGAGAAATGATCTCAGGCCTTGAAGTGGGGAGAAGAAACTGTATTATGAAGGCAGATGAACAGTTCCTGCAAAAGTGAGATTTGTGTGTGCAGCTGGGCCGCACCAGACCAGGGATGAGAGTGGGTGCCCGGGACTCGCCTACACTGCCTGGGGGTGCAGCCCGCACTCCTCACTACAGTCAAATCGACTGTGCGTGCCTTCCAGTGGCTCGGGAGAGGACTCCAG-GGGGAGGGATgctta------ccttgtgggctttggaatataag------ccctttcaccttctccgctggtcctcaccaccttggcaaggcaggtat----tgtaaccctgttttctcaggtaaggacatggaggctgggaggggtctagagactggcctggctagtaggaggccgagtcaggatttgaaccagcagatcatctgaccccagagccggtAGTGGGCGGCACAGCGGGAGCTGCAACCAAGGCTCTTGACTCCTGCCTCG----TCATTCCCT-------GAGGTCCACAGGACAACCAGCCAGGGACCTGGGGCCCCATCTTGACACCCTGGGGAGA------GGTGCTAGGCCTCTTT-TGGGTCTATGGGCTACTTTTGGGCCAGTGGAGCCCGGTAAAGACCATCTCAAACCGTGTGCCAGGGGAGGTCAGACTCCAAGAGCACCACCTTCGGGCTTCCAGCTGTGTGGGCTGGACAAAGAAGGCTCAGAG-AATTAGGGGGTTTGTA-TTTGATCCTTTTCCTTCCAAGGCtgggattaccaaatgaaacacagggcatccagttacatttgaatttcaggtaacaa---------tttttttt-
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120742063 1211 + 123690457 CTGCCTGTGCTCACCGTGGCCTGGTTTACGCTGCACGT-------------GTCCCGTGAGctccaccttacaggtgcag-aatgcaggcttggagctgagagacttggccagggtcacagggc---------ggagagcagattctccagctcagggtcccaagtccacacgctttcctctccacca----GATTTGAAGACTGTACCAGGAGAGCCGCAGTGTTCCGGAGCCACCGAGGGGCTGGGCCGGGCTTTGCCATATTTGAGGAGACCCCCCT------------------------------GGACCC---------------GAGAGACTGTGGGCTTGGGGAGCACGAGGAGGTTTCACAGCAGAAAGGACACCCCGGGGCTCCTGGACAAGCCGGAAAATGTGCCAGGGGA-------AGTCAGGCTCCAAGGGCACCACTCT--GGGCTTCTAGCTGTGTGGGCT-------------------------------GGACCAAGAAGGCTCAGAGAAATGATCTCAGGCCTTGAAGTGGGGAGCAGAAACTGTATTATGAAGGCAGACAAACAGTTCCTACAAAAGTGAGATTTGTGTGTGCAGCTGGGCCGCACCGGAGCAGCGATGAGAGCAGGCGCCCAGGACTCGCCGACACTGCCTGGGGGTGCAGCCCGCACTCCTCACTATGGTCAAATCCACTGTGTGTGCTTTCCAGTGGCCCGGGAGAGGACTCCATGGGGGAGGGATGCTCA------CCTTGTGGGCTTTGGAATAtaag------ccctttcaccttctccact-gtcctcaccaccttggcaaggcagctat----tgtgaccctgttttctcaggtgaggacgtggaggctgggaggggtctggatactggcctggctagtaggaggccgagtcaggatttgaaccagcagatcatctgaccccagagccggtAGTGGGCGGCACAGCAGGAGCTGCAGCCGAGGCTCTTGACTCCTGCCTCG----TCATTCCCT-------GAGGTCCACAGGACAAGCAGCCGGGGACCTGGGGCCCCATCCTGACGCCCTGGGGAGA------GGTGCTAGGCCTCTTT-TGGATCTATGGGCTACTTTTGGACCAGTGGAGCCGGGTAAAGACCATCTCAAACCGTGTGCCAGGAGAGGTCAGACTCCAAGAGCTCCACCTTCGGGCTTCCAGCTGTGTGGGCTGGACCAAGAAGGCTCAGAG-AATTAGGGGGTTCGTA-TTTGATCCTTTTCCTTCCAAGACtgggattaccagataaaatacagggcatccagttacatttgaatttcaggtaacaa---------tttctttt-
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            3455 1191 +    111706 CTGCCTGTGCTCACCGTGGCCTGGTG-----TGCACAT-------------GTCCCGttagctccaccttacggatgcagaaatgcaggcttggagctgagagacttggccagggtcacagggc---------agagagcaggttctccaactcagggtccccagtccacctgctttcctctccacca----gattgGAAGATGGTACCAGGAGAGCCGCAGTGTTCCAGAGCTCCCGAGGGGCTGGGCCGGGCTTTGCTGTATTTGAGAAGACCCTCC-------------------------------GGACCC---------------AAAAGGCTGTGGGCTTGGGGAGCATGAGGAGGTTTCACAGCAAAACTGACACCCCGGGGCTCCTGGAGAAGCTGGAAAATGTGCCAGGGGA-------AGTCAGGCTCCAAGGGCACCACTCT--GGGCTTCCAGCTGTGTGGGCT-------------------------------GGACCAAGAAGGCTCAGAGAAATGATCTCAGGCCTTGAAGTGGGGAGAAGAAACTGTATTATGAAGGCAGAGGAACAGTTCCTGC-AAAGTGAGATTTGTGTGTGCAGCTGGGCTGCAATGGACCAGTGGTGGCAGCGGGTGCCCAGGACTCGCC--CGCTGCCTGGGGGTGCAGCCCGTACTCCTCACTATAGTCACATCGACTGTGCGTGCTTTCAGGTGGCCGGGGAGAGGACTCCATGGGGGAGGGATgctta------ccttgtgggctttggaatataagggttttccctttcaccttctccgctggtcctcaccaccttggcaaggcaggtat----tgtgaccctgttttctcaggtgaggacatggaggctgggaggggtctagagactggccgggctagtaggaggccgag--------------------tcatccggccccagagccagCAGTGGGCAGCACAGCGGCAGCTGCAACCAAGGA--------GCTGCCTCG----TCATTCCCT-------GAGGTCCACAGGACAGCCAGC-GGGGACCTGGGGCCCCGTCCTGATGCCCTGGGGAGA------GGTTCTAGGCCTCTTTGGGGGTCTATGGGCTACTTTTGGACCAGTGGAGCTGGGTAAAGACTATCTCAAACCATGTGCCAGGGGAGGTCAGACTCCAAGAGTGCCACCTTTGGGCTTCTAGCTGTGTGGGCTGGACCAAGAAGGCTCAGAGAAATGAGGGGGTTTGTA-TTTGATCCTTTTCCTTCCACGACtgggattactacataaaacacagggcatccagttacatttgaatttcaggtaacaattttttt-ttttttttt-
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     38628 1192 + 192460366 CTGCCTGTGCTCACCGTGGCCTGGTG-----TGCACAT-------------GTCCCGttagctccaccttacggatgcagaaatgcaggcttggagctgagagacttggccagggtcacagggc---------agagagcaggttctccaactcagggtccccagtccacctgctttcctctccacca----gattgGAAGATGGTACCAGGAGAGCCGCAGTGTTCCAGAGCTCCCGAGGGGCTGGGCCGGGCTTTGCTGTATTTGAGAAGACCCTCC-------------------------------GGACCC---------------AAAAGGCTGTGGGCTTGGGGAGCATGAGGAGGTTTCACAGCAAAACTGACACCCCGGGGCTCCTGGAGAAGCTGGAAAATGTGCCAGGGGA-------AGTCAGGCTCCAAGGGCACCACTCT--GGGCTTCCAGCTGTGTGGGCT-------------------------------GGACCAAGAAGGCTCAGAGAAATGATCTCAGGCCTTGAAGTGGGGAGAAGAAACTGTATTATGAAGGCAGAGGAACAGTTCCTGC-AAAGTGAGATTTGTGTGTGCAGCTGGGCTGCAATGGACCAGTGGTGGCAGCGGGTGCCCAGGACTCGCC--CGCTGCCTGGGGGTGCAGCCCATACTCCTCACTATAGTCACATCGACTGTGCGTGCTTTCAGGTGGCCGGGGAGAGGACTCCATGGGGGAGGGATgctta------ccttgtgggctttggaatataagggttttccctttcaccttctccgctggtcctcaccaccttggcaaggcaggtat----tgtgaccctgttttctcaggtgaggacatggaggctgggaggggtctagagactggccgggctagtaggaggccgag--------------------tcatccggccccagagccagCAGTGGGCAGCACAGCGGCAGCTGCAACCAAGGA--------GCTGCCTCG----TCATTCCCT-------GAGGTCCACAGGACAGCCAGC-GGGGACCTGAGGCCCCGTCCTGATGCCCTGGGGAGA------GGTTCTAGGCCTCTTTGGGGGTCTATGGGCTACTTTTGGACCAGTGGAGCTGGGTAAAGACTATCTCAAACCATGTGCCAGGGGAGGTCAGACTCCAAGAGTGCCACCTTTGGGCTTCTAGCTGTGTGGGCTGGACCAAGAAGGCTCAGAGAAATGAGGGGGTTTGTA-TTTGATCCTTTTCCTTCCACGACtgggattactacataaaacacagggcatccagttacatttgaatttcaggtaacaatttttttgttgttgttg-
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     35117 1169 - 187378091 CTGCCTGTGCTCACCGTGGCCTGGTG-----TGCACAT-------------GTCCCGTTAGCTCCACCTTACAGATGCAGAAATGCAGGCTTGGAGCTGAGAGACTTGGCCAGGGTCACAGGGC---------AGAGAGCAGGTTCTGCAACTCAGGGTCCCCAGTCCACCTGCTTTCCTCTCCACCA----GACTGGAAGATGGTACCAGGAGAGCCGCAGTGTTCCAGAGCTCCCGAGGGGCTGGGCCGGGCTTTGCTGTATTTGAGAAGACCCCCC-------------------------------GGACCC---------------AAAAGGCTGTGGGCTTGGGGAGCATGAGGAGGTTTCACAGCAAAAGTGACACCCCGGGGCTCCTGGAAAAGCTGGAAAATGTGCCAGGGGA-------AGTCAGGCTCCAAGGGCACCACTCT--GGGCTTCCAGCTGTGTGGGCT-------------------------------GGACCAAGAAGGCTCAGAGAAATGATCTCAGGCCTTGAAGTGGGGAGAAGAAACTGTATTATGAAGGCAGATGAACAGTTCCTGC-AAAGTGAGATTTGTGTGTGCAGCTGGGCTGCAGTGGACCAGTGGTGGCAGCGGGTGCCCAGGACTCGCC--CGCTGCCTGGGGGTGCAGCCCGTACTCCTCACTAGAGTCACATTGACTGTGTGTGCTTTCAGGTGGCCGGGGAGAGGACT--------------------------CCTTGTGGGCTTTGGAATATAAGGGttttccctttcaccttctccACTGGTCCTCACCACCTTGGCAAGGCAGGTAT----TGTGACCCTGTTTTCTCAGGTGAGGACATGGAGGCTGGGAGGGGTCTAGAGACTGGCCGGGCTAGTAGGAGGCCGAG--------------------TCATCCGGCCCCAGAGCCAGCAGTGGGCAGCACAGCGGCAGCTGCAACCAAGGA--------GCTGCCTCG----TCATTCCCT-------GAAGTCCACAGGACAACCAGC-GGGGACCTGGGGCCCCATCCTGATGCCCTGGGGAGA------GGTTCTAGGTCTCTTTGGGGGTCTATGGGCTACTTTTGGACCAGTGGAGCTGGGTAAAGACTATCTCAAACCATGTGCCAGGGGAGGTCAGACTCCAAGAGTGCCACCTTTGGGCTTCTAGCTGTGTGGGCTGGACCAAGAAGGCTCAGAGAAATGAGGGGGTTTGTA-TTTGATCCTTTTCCTTCCACGACTGGGATTACTACATAAAACACAGGGCatccagttacatttgaatttcaggtaagaattttt---ttttttttt-
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   386245 1183 -  91754291 CTGCCTGTGCTCA------CCTGGTG-----TGCACAC-------------GTCCcgttagctccaccttacagatgcagaaatgcaggcgtggagctgagagacttggccagggtcacaggac---------agagagcaggttctccagctcagggtccccagtccacctgctttcctctccacca----gaTTGGAAGATGGTACCAGGAGAGCCGCAGTGTTCCAGAACTACTGAGGGGCTGGGCCGGGCTTTGCTGTATTTGAGAAGACCCCCT-------------------------------GGACCC---------------AAAAGGCTGTGGGCTTGGGGAGCAGGAGGAGGTTTCACAGCAAAAATGACACCCCAGGGCTCCTGGAAAAGCTGGAAAATGTGCCAGGGGA-------AGTCAGGCTCCAAGGGCACCACTCT--GGGCTTCTAGCTGTGTGGGCT-------------------------------GGACCAAGAAGGCTCAGAGAAATGATCTCAGGCCTTGAAGTGGGGAGAAGAAACTGTATTATGAAGGCAGAGGAACAGTTCCTGC-AAAGTGAGATTTGTGTGTGCAGCTGGGCTGCACGGGACCAGTGGTGACAGCGGGTGCCCAGGACTCGTC-ACACTGCCTGGGGGTGCAGCCCGTACTCCTCACTATAGTCACATCGACTGTGCGTGCTTTCAGGTGGCTGGGGAGAGGACTCCATGGCGGAGGGATGCTTA------CCTTGTGGGCTTTGGAATATaagggttttccctttcaccttctccgctggtcctcaccaccttggcaaggcaggtat----tgtgaccctgttttctcaggtgaggacacggaggctgggaggggtctagagactggccgggctagtaggaggccgag--------------------tcaTCCGGCCCCAGAGCCAGCAGTGGGCAGCACAGCGGCAGCTGCAACCAAGGA--------CCTGCCTCG----TCATTCCCT-------GAGGTCCACAGGACAACCAGC-GGGGACCTGGGGCCCCATCCTGACGCCCTGGGGAGA------GGTTCTAGGCCTCTTTGGGGGTCTATGGGCTACTTTTGGACCAGTGGAGCTGGGTAAAGACCATCTCAAACCATGTGCCAGGGGAGGTCAGACTCCAAGAGTGCCACCTTTGTGCTCCTAGCTGTGTGGGCTGGACCAAGAAGGCTCAGAGAAATGAGGGGGTTTGTA-TTTGATCCTTTTCCTTCCACGACtgggattactacgtaaaacacagggaatccagttacatttgaatttcaggtaacaatttt----ttttttttt-
i chlSab2.chr15                C 0 C 0
s canFam3.chr33                 29047664 1189 +  31377067 ctgcacgttttacacttggattgatttactcttcacatccctgtgaaacaggtgcccttagctccattttacagatgagaaagtgcaggctgggagccaggagacctggccagggtgacatggttggaaagcaggagagcagggattcagactcaggccccaaagaacacgcaccttcctctctgccaGTGTGATTTGAGGAATAGACCAGGAGAGCTGCCACATTCTAGAGTTGT--GCGGGCTGCG-TGGGCTTTGCTGCGTCTGAGAAGACCCCTGCTGGGTAGGAGACTTGGGTGGGGGGGCTGTGAGACCCCAGGGTGGGGGGGTGAAGAGGTTAGGGGC-TGGGAGGCATGAGGAGGTTTCACAG-AAGGATGATATTGTGGGGTTCCCGGATAAAGAAGAAAATACTTCAGGGGAGGTGGGTGGTCAGACCCCAAGAATACCTCTGTTGGGGCCTTAGCTTGTGTGGGCTGACACAGAAAGGCTTTGATTCCACCGGGTGGGGATTGAGGAAGCTCAGAGAAATGG-CTTGGGCTTTGAAGTGGGGAGAAGGAAGTATA--------------------TTCCCGTAGAAGCACGATT--CGTGAACAGCTGAG------------GAGGGTGAAGG-------CCGTGACTCACCTGATACGCATGTGGGGCCAGCCTGACCTTCTGAAGGT--------------TGTGTGCTGTCAATGCCTCTTTGAGAGGACACGGCTGGGGAGGGGTGCTTAGTGGCCCCTTGCAGGCTTTGGAATATAAG-ACTTTCCCGTTCCCCTTCCCCTCAGGCCCTCACCAC---GGCAAGGCAGGTCTGGTAGGTAACCCTGGTTCACGAG----------GGCGGCCCGGAGG------------GGCCTGGCCGGTAGGACGCGGAGTCAGGATTTGAGCCAG----TCATTGGACTCcagagc---tagttggcaacaggcctagggccggagcccagtctttcgcttcctggtccagtgctctttcactgcTCAGGGAGAGACATGGGAGGACAAACTGAGGACCTGGGGCCC-----TGACAGGTAGAGGTGACCACATGGTCTCGTACTTCCGT-TGGGTCCTTGGG-TACTTTGGGGCCAGTAGACCTCAGTAACGACCATCTCAAACCAT-------------TGGAACCCCAAAAG--------------------------------------------------------GAGGGTTTATATTTTGATTCTTTTCCTTCCAAGAGGAAGGTTCCTGGATAAAACCTGGGACATCCACTTACATTTGAAtttt---taaaaa--------tattttattt
i canFam3.chr33                I 5697 I 238
e mm10.chr16                    65410920 1607 -  98207768 I
e calJac3.chr17                   900810   22 -  74750902 I

a score=916611.000000
s hg38.chr3_KI270935v1_alt         94040 393 +    197351 taagtgtaagtatgtagccaatattgcatgagaaatactcatgctaaaaagttattcg---------tcgtttatctgaaatgcaagttcaaatttaaccgagtaccctgtatttttatttgctaaatctagaaaccctCTCCAAGAGGCTCCTTGGCCCACTCACAGGGAGAGCCCGATCTCCCTCTAGACAGGGGAGG----CCCCCTTTCTCAGGCCAGAAAAGATcttgtagtaaactactcaagaggctgaggcaggaggatcgcttgagcccaggaattcaagacctgcctgggcaacagagcaagaccctgtctctagggaagataTCCTACCGTAGCCTCCCTCGGGG-ACTCCCATTCCTCCCACCTCAGGGCCAGTCAAGGGAACAGGCCTCTGCTC
s panTro4.chr3_GL389630_random     56062 393 +    103936 taagtgtaagtatgtagccaatattgcatgagaaatactcatgctaaaaagttattcg---------tcgtttatctgaaatgcaagttcaaatttaaccgagtaccctgtatttttatttgctaaatctagaaaccctCTCCAAGAGGCTCCTTGGCCCACTCACAGGGAGAGCCCGATCTCCCTCTAGACAGGGGAGG----CCCCCTTTCTCAGGCCAGAAAAGATCTTGTAGTAAACTACTCAAgaggctgaggcaggaggatcgcttgagcccaggaattcaagacctgcctgggcaacagagcaagaccctgtctctggggaaaaTATCCTACCGTAGCCTCCCTCGGGG-ACTCCCATTCCTCCCACCTCAGGGCCAGTCAAGGGAACAGGCCTCTGCTC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199750754 393 + 202140232 taagtgtaagtatgtagccaatattgcatgagaaatacccatgctaaaaagttattcg---------tcatttatctgaaatgcaagttcaaatttaaccaagtaccctgtatttttatttgctaaatctagaaaccctCTCCAAGAGGCTCCTTGCCCTACTCACAGGGAGAGCCCGATCTCCCTCTAGACAGGGGAGG----CCCCCTTTTTCAGGCCGGAAAAGATcttgtagtaaactacacaagaggctgaggcaggaggatcgcctgagcccaggaattcaagacctgcctgggcaacagagcaagaccctgtctctggggaaaaTATCATACCGTAGCCTCCCTCAGGG-ACTCCTGTTCCTCCCACCTCAGGGCCAGTTAAGGGAACAGGCCTCTGCTC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120743274 391 + 123690457 taagtgtaagtatgtagccaatattgcatgagaaatactcatgctaaaaagttattcg---------tcatttatctgaaatgcaagttcaaatttaaccgagtaccctgtatttttatttgctaaatctagaaactctCTCCAAGAGGCTCCTTGGCCTACTCACAGGGAGAGCCCCATCTCCCTCTAGACAGGGGAGG-----CCCCTTTCTCAGGCCAGAAAAGATCTTGTAGTGAACTACGCAAgaggctgaggcaggagggtcgcttcagcccaggaattcaaggcctgcctgggcaacagagcaagaccctgtctctggggaaaGTATCCTACCGTAGCCTCCCTCGGGG--CCCCCATTCCTCCCTCCTCAGGGCCAGGCAAGGGAGCAGCCCTCTGCTC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            4646 399 +    111706 ttagtgtaagtatgtagccaatattgcatgagaaat----atgctaaaaagttattcagataaacttgcatttatctgaaatgcaagttcaaatttaactgagtaccctatatttttatttgctaaatctagaaaccctCTCCAAGAGGCTCCTTGGCCCACTCCCAGGGAGAGCCCGATCTCCCTGCAGGCAGGAGAGG--CCCCCCCTTCCTCAGGCCAGAAAAGATCTTGCAGTAAACTACTCAAgaggctggggcaggaggatcacttgagcccaggaattcaagacctgcctgggcaacaaagcaagatcctgtctctggggaaaaTATCCTACCGTGGCCTCCCTCGGGG--CCCCCGTTCCTCCCACCTCAGGGCCAGTCAAGGGAACAGGCCTCTGCTC
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     39820 399 + 192460366 ttagtgtaagtatgtagccaatattgcatgagaaat----atgctaaaaagttattcagataaacttgcatttatctgaaatgcaagttcaaatttaactgagtaccctatatttttatttgctaaatctagaaaccctCTCCAAGAGGCTCCTTGGCCCACTCCCAGGGAGAGCCCGATCTCCCTGCAGGCAGGAGAGG--CCCCCCCTTCCTCAGGCCAGAAAAGATCTTGCAGTAaactactccagaggctggggcaggaggatcacttgagcccaggaattcaagacctgcctgggcaacaaagcaagatcctgtctctggggaaaaTATCCTACCGTGGCCTCCCTCGGGG--CCCCCGTTCCTCCCACCTCAGGGCCAGTCAAGGGAACAGGCCTCTGCTC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     36286 399 - 187378091 ttagtgtaagtatgtaGCCAATATTGCATGAGAAAT----ATGCTAAAAAGTTATTCAGATAAACTTGCATTTATCTGAAATGCaagttcaaatttaactgagtaccctatatttttatttgctaaatctagaAACCCTCTCCAAGAGGCTCCGTGGCCTACTCACA-GGAGAGCCCGATCTCCCTCTAGACAGGAGAGGCAcccccccTTTCTCAGGCCAGAAAAGATCTTGCAGtaaactactcaagaggctggggcaggaggatcacttgagcccaggaattcaagacctgcctgggcaacagagcaagatcctgtctct-gggAAAATATCCTACCGTGGCCTCCCTCGGGG--CCCccgttcctcccacctcagggccaGTCAAGGGAACAGGCCTCTGCTC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   387428 402 -  91754291 ttagtgtaagtatgtaaccaatattgcatgagaaat----atgctaaaaagttattcagataaacttgcatttatctgaaatgcaagttcaaatttaactgagtaccctatatttttatttgctaaatctagaaaccctCTCCAAGAGGCTCCTTGGCCTACTCACA-GGAGAGCCCGATCTCCCTCTAGACAGGAGAGGCACCCCCCCTTTCTCAGGCCAGAAAAGATCTTGCAGTAaactactcaacaggctggggcaggaggatcacttgagcccaggaattcaagacctgcctgggcaacagagcaagatcctgtcactggggaaaaTATCCTACTGTGGCCTCCCTCGGGGCCCCCCCGTTCCTCCCACCTCCGGGCCAGTCAAGGGAACAGGCCTCTGCTC
i chlSab2.chr15                C 0 C 0
e mm10.chr16                    65410920 1607 -  98207768 I
e canFam3.chr33                 29048853 238 +  31377067 I
e calJac3.chr17                   900810  22 -  74750902 I

a score=70851.000000
s hg38.chr3_KI270935v1_alt         94433 27 +    197351 TGGGCAG-AAGTGCTG-GCAGCC--GCTCTC
s panTro4.chr3_GL389630_random     56455 27 +    103936 TAGGCAG-AAGTGCCG-GCAGCC--GCTCTC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199751147 27 + 202140232 TAGGCAG-AAGTGCCA-GCAGCC--GCTCTC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120743665 27 + 123690457 TAGGCAG-AAGTGCCA-GCAGCC--GCTCTC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            5045 27 +    111706 TAGGCAG-AAGTGCCA-GCAGCC--GCTCTC
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     40219 27 + 192460366 TAGGCAG-AAGTGCCA-GCAGCC--GCTCTC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     36685 27 - 187378091 TAGGCAG-AAGTGCCA-GCAGCC--GCTCTC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   387830 26 -  91754291 TAGGCAG-AAGTGCCA--CAGCC--GCTCTC
i chlSab2.chr15                C 0 C 0
s canFam3.chr33                 29049091 31 +  31377067 TGGGCAGCGAGTGCCACCCAGCCCAGCACTC
i canFam3.chr33                I 238 C 0
e mm10.chr16                    65410920 1607 -  98207768 I
e calJac3.chr17                   900810 22 -  74750902 I

a score=894006.000000
s hg38.chr3_KI270935v1_alt         94460 355 +    197351 --------TGAAAAGCTAGGTG---TTGCCTCAGG-GTCTCCCG-------GTGTCCTGTGGAAAATGCCTGGCCACGGTTTCCATGGTTCCCAGGCTCCAACCCTGCAGTTCTCAGCCCTCATTCAGGAGGGGCCTCGGCAGGGTGGGGGGTGCCGTCTTTCCCTTGCTGGAGCCCCAAGGACTCTGCCGGCTCCCTCGCTTTGGC-----AGCAGCACTGCCCACCCTGTCTCTGGAGGTTCCCCCGCCTCAATCCACCCAGCTACCCCGAAAGGCACAATCATAGGCCTTTCTCGTCTTTTAAGGGTTTTTACTTCCATGGGGAACTATGTGTTGGATGAGAAAAGTATCCG-GGGAAGGGGACAGAGGTT-----CAGAAA
s panTro4.chr3_GL389630_random     56482 356 +    103936 --------TGAAAAGCTAGGTT---TTGCCTCAGCTGGCACCCG-------GTGTCCTGTGGAAAATGCCTGGCCACGGTTTCCATGGTTCCCAGGCTCCAACCCTGCAGTTCTCAGCCCTCATTCAGGAGGGGCCTCGGCAGGGTGGGGGGTGCCCTCTTTCCCTTGCCGGAGCCCCAAGGACTCTGCCGGCTCCCTCGCTTTGGC-----AGCAGCACTGCCCACCCTGTCTCTGGAGGTTCCCCCCCCTCAATCCACCCAGCTACCCCGAAAGGCAAAATCATAGGCCTTTCTCATCTTTTAAGGGTTTTTACTTCCATGGGGAAGTATGTGTTGGATGAGAAAAGTATCCG-GGGAAGGGGACAGAGGTT-----CAGAAA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199751174 354 + 202140232 --------TGAAAAGCTAGGTT---TTGCCTGAGCTGGCTCCCT-------GTGTCCTGTGGAAAATGCCTGGCCACGGTTTCTATGGTTCCCAGGCTCCAACCCTGCAGTCCTCAGCCCTCA-TCAGGAGGGGCCTCGGCAGGGTGGGGAGTGCCCTCTTTCCCTTGCTGGAGCCCCAAGGACTCTGCCAGCTCCCTCGTTTTGGC-----AGCAGCACTGCCCACCCTGTCTCAGGAGGTTCCTTCCCCTCAATCCACTCAGCTACCCTGAAAGGCA-AATCATAGGCCTTTCTCATCTTTCAACGGTTTTTACTTCCATAGGGAAGCATGTGTTGGATGAGAAAAGTATCTG-AGGAAGGGGACACAGGTT-----CAGAAA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120743692 355 + 123690457 --------TGGAAAGCTAGGTT---TTTCCTGAGCTGGCTCCCT-------GTGTCCTGTGGAAAATGCCTGGCCACAGTTTCTGTGGTTCCCAGGCTCCAACCCTGCAGTCCTCAGCCCTCATTCAGGAGGGGCCTCGGCAGGGTGGCGAGCGCCCTCTTTCCCTTGCCAGAGCCCCAAGGACTCTGCCAGCTCCCTCGCTTCGGC-----AGCAGCACTGCCCACCCTGTCGCTGGAGGTTCCTCCCCCTCAATCCACCCAGCTACCCCGAAAGGCA-AATCATAGGCCTTTCTCGTCTTTTAAGGGTTTTTACTTCCATGGGGAAGCCTGTGTTGGATGAGAAAAGTATCCG-GGGAAGGAGACACAGGTT-----CAGAAA
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            5072 340 +    111706 --------TGAAAGGCTAGGTT---TTGCCTGAGCTGGCTCCCT-------GTGTCCTGTGGAAAATGCCTGGCCACAGTTTCTGTGGTTCCCGGGCTCCAACCCTGCAGTTCTCAG-CCTCATTCAGGAGGGGCCTTGGCAGGGTGGG--GCACCCTGTTTCCCTTGCCGGAGCCCCAAGGACTCTGCCGGCCCCCTCGCTTTGGC-----AGCAGCACTGCCCACCCTGTCTCTGGAGGTTCCTCC-CTTCGGTCCACCCAGCCACCCCGAA------------AGGCCTTTCTCATCTTTGAAGGGTTTTGACTTCCGTGGGGAGGTATGTGTTGGATGAGAAAAGTGGCCG-GGGAAGGGGACACAGGTT-----CAGAAA
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     40246 340 + 192460366 --------TGAAAGGCTAGGTT---TTGCCTGAGCTGGCTCCCT-------GTGTCCTGTGGAAAATGCCTGGCCACAGTTTCTGTGGTTCCCGGGCTCCAACCCTGCAGTTCTCAG-CCTCATTCAGGAGGGGCCTTGGCAGGGTGGG--GCACCCTGTTTCCCTTGCCGGAGCCCCAAGGACTCTGCCGGCCCCCTCGCTTTGGC-----AGCAGCACTGCCCACCCTGTCTCTGGAGGTTCCTCC-CTTCGGTCCACCCAGCCACCCCGAA------------AGGCCTTTCTCATCTTTGAAGGGTTTTGACTTCCGTCGGGAGGTATGTGTTGGATGAGAAAAGTGGCCG-GGGAAGGGGACACAGGTT-----CAGAAA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     36712 340 - 187378091 --------TGAAAGGCTAGGTT---TTGCCTGAGCTGGCTCCCT-------GTGTCCTGTGGAAAATGCCTGGCCACAGTTTCTGTGGTTCCCGGGCTCCAACCCTGCAGTTCTCAG-CCTCATTCAGGAGGGGCCTTGGCAGGGTGGG--GCGCCCTGTTTCCCTGGCCGGAGCCCCAAGGACTCTGCCGGCCCCCTCGCTTTGGC-----AGCAGCACTGCCCACCCTGTCTCTGGAGGTTCCTCC-CTTCGGTCCACCCAGCCACCCCGAA------------AGGCCTTTCTCATCTTTGAAGGGTTTTGACTTCCGTGGGGAGGTATGTGTTGGATGAGAAACGTGGCCA-GGGAAGGGGACACAGGTT-----CAGAAA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   387856 340 -  91754291 --------TGAAAGGCTAGGTT---TTACCTGAGCTGGCTCCCT-------GTGTCCTGTGGAAAATGCCTGGCCACTGTTTCTGTGGTTCCCGGGCTCCAACCCTGCAGTTCTCAG-CCTCATTCAGGAGGGGCCTTGGCAGGGTGGG--GCGCCCTGTTTCCCTTGCCAGAGCCCCAAGGACTCTGCCGGCCCCCTCGCTTTGGC-----AGCAGCACTGCCCACCCTGTCTTTGGAGGTTCCTCC-CTTCGGTCCACCCTGCTACCCCGAA------------AGGCCTGTCTCATCTTTGAAGGGTTTTGACTTCCGTGGGGAAGTATGTGTTGGATGAGAAAAGTGGCCG-GGGAAGGGGACACAGGTT-----CAGAAA
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   900832 281 -  74750902 --------TGAAAAGTTAGGTT---TTGCCTGAGCTGGCTCCGT-------GTGTCATGTGGGAAATGCCTGGCCA--GTTTCTGTGGCTCTCCTGCTCCCGCCCTGTGGTTCTTGG------------------CCCGGCAGGGCGGAGAGTGCTCTGATTCACTTGCCGGAGCCTCAAAGACTCTGCCTGCTGCT---CTGTGGCTTCTGAGCAGCGCTCCCCACCCTGCCTCTGGCGGCTCCTCC-------------CCGTCACTCTG-------------------------------------------CTTCCATGGGGAAGCGTATGGTGGATGAGAAAAGTGTCCC-GGGAAGGTGACACAGGTT-----CAG-AA
i calJac3.chr17                I 22 C 0
s canFam3.chr33                 29049122 312 +  31377067 ATACAACCTCCAAGGGTCTGTCAAGTGGACAGGGCTGCGTCCCTCGGCTCCGTTACCCGTGGCACGTGGCTGGGCCCTGTTCCTGCGGCCCTGGGG-----------------TCGG---------GCGAGCAGCGCTGGGAAGCTTGG-------------CCCTT--------CCCCCAGACTC-GCCTGCTCCC---------------A---------CCTGCTCGGTCTGGGTAGCTGCCTCTCCCCTACTCCTCCCAGCTACCTCTAAGTACAAAACCACAGATGTTTCCTGTATTTGAAGGGTTTTTACTTCCGTGGGGAAACACCTGCTGGATGAGGGAAGTTTCGATGGGCAGGTGACAGGGATTTCTTCCAAAA-
i canFam3.chr33                C 0 C 0
e mm10.chr16                    65410920 1607 -  98207768 I

a score=1257304.000000
s hg38.chr3_KI270935v1_alt         94815 397 +    197351 GCTCTGCGAGTCCTGGACGCTG-----GTCTGC--------------------------CTTCTTGGCTCACCCTGGAAGGTGGACGCT----GGCCCCACACATCCCCTCTTAAAGACGCAGGCCGATAGCCAGCA-GATCCTGGGGCTTGCTGGCCCCAAGTGAGTTGTCAGGGTTTCAGAGGACACCAGTCATGGCAACCCCAGCTCCATGGCTGCCACACAGGCCTGGGCTTCCCAGGACTGCCTCCTTCTTGTTCGCTTATGTAGATGAAAAATGAGGTAACGGC-ACTCCCCTGCCCCACCCTCCTCCCAGAAGTGCCCAGGGTGTAAACGCAATAGCTTGTGTGA----AGT----CCACTGGAACCCA-GGCTCACCAAGTCAGTCTTAACCAACACAGGCCCCAGCACCCGCAGAGCAGACACTGCGATGACAA
s panTro4.chr3_GL389630_random     56838 397 +    103936 GCTCTGCGAGTCCTGGACGCTG-----GTCTGC--------------------------CTTCTTGGCTCACCCTGGAAGGTGGACACT----GGCCCCACACATCCCCTCTTAAAGACGCAGGCCGATAGCCAGCA-GATCCTGGGGCTTGCTGGCCCCAAGTGAGTTGTCAGGGCTTCAGAGGACGCCAGCCATGGCAACCCCAGCTCCATGGCTGCCACACAGGCCTGGGCTTCCCAGAACTGCCTCCTTCTTGTTCGCTTATGTAGATGAAAAGTGAGGTAACGGC-ACTCCCCCGCCCCGCCCTCCTCCCAGAAGTGCCCAGGGCGTAAACGCAATAGCTTGTGTGA----AGT----CCACTGGAACCCA-GGCTCACCAAGTCAGTCTTAACCAACACAGGCCCCAGCACCCGCAGAGCAGACACTGCGATGACAA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199751528 397 + 202140232 GCTCTGCGAGTCCTGGATGCTG-----GTCTGC--------------------------CTTCTTGGCTCACCCTGGAAGGTGGACGCT----GGCCCCACACATCCCCTCTTAAAGATGCAAGCCAACAGCCAGCA-GATCCCGGGGCTTGCTGGCCCCAAGTGAGTTGTCAGGGCTTCAGAGGATGCCAGTCACGGCAACCCCAGCTCCGTGGCTGCCACACCGGCCTGGGCTTCCCAGGACTCCCTCCTTCTTATTCACTTATGTAGATGAAAAATGAGGTAATGGC-ACTCCCCCTCCTCACCCTCCTCCCAGAAGTGCCCAGGGTGTAAACACAATAGCTTGTGTGA----AGT----CCACTGGAATCCA-GGCTCACCAAGTCAGTCTTAACCAACACAGGCCTCAGCACCCGCAGAGCAGACACTGCGATAACAA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120744047 395 + 123690457 GCTCTGCGAGTCCTGGACGCTG-----GTCTGC--------------------------CTTCTTGGCTCACCCTGGAAGGTGGACGCT----GGCCCCACACATCCCCTCTTAAAGACGCAGGCCGAGAGCCAGCA-GATCCCAGGGCTTGCTGGCCCCAAGTGAGCTGTCGGGGCTTCAGAGGACGCTAGTCATGGCAACCCCAGCTCCGTGGCTGCCGC-TGGGCCTGGGCTTCCCAGGACTCCCTCCTTCTTGTTCGCTTATGTAGATGAAAAATGAGGTAACGGC-ACTCCCCTGCC-CACCCTCCCCCAAGAAGTGCCCAGGGTGTAAACGCGATAGCTTGTGTGA----AGC----CCACTGGAACCCA-GGCTCAACAAGTCAGTCTTAACCAACACAGGCCCCAGCACCCGCAGAGCAGACACTGCGACGACAA
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            5412 397 +    111706 GCTCTGCGAGTCCTGAACGCTG-----CTCTGC--------------------------CTTCTTGGCTCACCCTGGAAGGTGGGCGCT----GGCCCCACTCATCCCCTGTTAAAGACGCAGGCCGAGAGCCAGCA-GATCCCGGGGCTTGCTGGCCCCTAGTGAGTTGTCAGGGCTTCAGAGGACGCCAGTCATGGCAACCCCAGCTCTGTGGCTGCCACATGGGCCTGGGCTTCCCAGGACTGCCTCCTTCTTGTTCGCTTATGTAGATGAAAAAGGAGGTAACAGC-ACTTCCCCTCCCCACCCTCCTCCCAGAAGTGCCCAGGGTGTAAACGAAATCGCTTGCGTGA----AGT----CCACTGGAACCCA-GGCTCACCAAGTCAATCTTAACCAACACAGGCCCCAGCAGCCGCAGAGCAGACGCTGCGATGACAA
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     40586 397 + 192460366 GCTCTGCGAGTCCTGGACGCTG-----CTCTGC--------------------------CTTCTTGGCTCACCCTGGAAGGTGGACGCT----GGCCCCACTCATCCCCTGTTAAAGACGCAGGCCGAGAGCCAGCA-GATCCCGGGGCTTGCTGGCCCCTAGTGAGTTGTCAGGGCTTCAGAGGACGCCAGTCATGGCAACCCCAGCTCTGTGGCTGCCACATGGGCCTGGGCTTCCCAGGACTGCCTCTTTCTTGTTCGCTTATGTAGATGAAAAAGGAGGTAACAGC-ACTTCCCCTCCCCACCCTCCTCCCAGAAGTGCCCAGGGTGTAAACGAAATCGCTTGCGTGA----AGT----CCACTGGAACCCA-GGCTCACCAAGTCAATCTTAACCAACACAGGCCCCAGCAGCCGCAGAGCAGACGCTGCGATGACAA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     37052 397 - 187378091 GCTCTGCGGCTCCTGGACGCTG-----CTCTGC--------------------------CTTCTTGGCTCACCCTGGAAGGTGGACGCT----GGCCCCACTCATCCCCTGTTAAAGACGCAGGCCGAGAGCCAGCA-GATCCGGGGGCTTGCTGGCCCCTAGTGAGTTGTCAGGGCTTCAGAGGACGCCAGTCATGGCAACCCCAGCTCTGTGGCTGCCACACGGGCCTGGGCTTCCCAGGACTGCCTCCTTCTTGTTCGCTTATGTAGATGAAAAAGGAGGTAACAgc-acttcccctccccaccctcctcccagaAGTGCCCAGGGTGTAAACGAAATCGCTTGCGTGA----AGT----CCACTGGAACCCA-GGCTCACCAAGTCAATCTTAACCAACACAGGCCCCAGCAGCCGCAGAGCAGACGCCGCGATGACAA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   388196 397 -  91754291 GCTCTGCAAGTCCTGGACGCTG-----CTCTGC--------------------------CTTCTTGGCTCACCCTGGAAGGTGGACGCT----GGCCCCACTCATCCCCTGTTAAAGACGCAGGCCGAGAGCCAGCA-GATCCCGTGGCTTGCTGGCCCCTAGTGAGTGGTCAGGGCTTCAGAGGACGCCAGTCATGGCAACCCCAGCTCTGTGGCTGCCACACGGGCCTGGGCTTCCCAGGACTGCCTCCTTCTTGTTCGCTTATGTAGATGAAAAAGGAGGTAACAGC-ACTTCCCCTCCCCACCCTCCTCCCAGAAGTGCCCAGGGTGTAAACGAAATCGCTCGTGTGA----AAT----CCACTGGAACCCA-GGCTCACCAAGTCAATCTTAACCAACACAGGCCCCGGCAGCCACAGAGCAGATGCTGCGATGACAA
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   901113 299 -  74750902 GCTCCTCGAGTCCTGGCCACTG-----CTCTGT--------------------------CTTCTTGGCTCACCCTGGAAGGCGGACACT----GGCCCCACACATCCCTTCTCAAAGCCGCAGGCCGAGAACCACAG-GATCCCGGGGCTTGCTGGCCCCAAGTGGGTTGTC---------------------------------------------------------------------------------CTTCTTTGCTTATGCAGATGAAAAACGAGGTAACAGC-ACTGCCCGTCCCCACCCTCCTCCCAGAGGTGCGCAGGGTATAAACACAGTCGCTTGCGTGA----AG----------------------TCACCGAGTCAGTCTTAACCACCACAGGCCCTGGCACCAGCAGCCCAGAAAATGCGATGACAG
i calJac3.chr17                C 0 I 62
s mm10.chr16                    65412527 348 -  98207768 GCTCTGCAGTCCTTGGCTCATGTGGATTCCTGT--------------------------CTTCTTTGCCTGCCTTAGTCGGTATATGCTGTGAGGCT-----------------GAGCTGTAGACCCGGGGTCAGCT-G-----GGATCCTTTGGGGCAGGGGGCAGTTGTCAGGGCTTCAGAGAGCACTAGTTGGGGTAG-CATGTCTTCGGGGCTGCTGTGAAGGCTTTGGCTTCTCTGTGCTGCCTTCATCCTCTAGGTTTATGTAGATGATGA-------------------CCCTCCATGCCATCC----AATAGCACCTAGGGCATAAAC-----------TGTGATGTCAGT----CCACTGGCAC-------TCACCAGGTTGTTCTCATCCCACACAGGTCTCGACATTAGCAGATCAGTTCCTTTGGTGACAA
i mm10.chr16                   I 1607 C 0
s canFam3.chr33                 29049434 418 +  31377067 ATTCTGAGAGTCCTGGTCCCTG-----CTCTGTAGTTCTCGGCTCACTTAGACTCCTGGCTTCTTTGCCCCCCATCAAGGCTGTGTCCT----GGCCCCAAGCCTTCCCTCTGATGGCTTCAGACCAATAATCAACTCAATTCTGAGGCCTGCTTGTCTCAACAGGGTCATC--------AGAGGACATCAGTCAGGG-GATCCCAGTTCCATGGTTGACCCATGGGGCCGGTCTTCT--GATACACCTCCTCCTTCCTTGTATGTGTAGATGAAAAATGAAATAGAAGCAACTTCCCCTCCCCACCCTCCTCCCAG-GGTGCCCAGGGCATAAGCACAAGAGCTTGTGCGA----AGTCGGCCCACTGGGACTCGTGGCTTACAAAGCTGGTCTTACCCAACACAGGCCCCAGCACCAGCAGACCAGGTCCTGTGGTGACAG
i canFam3.chr33                C 0 C 0

a score=53202.000000
s hg38.chr3_KI270935v1_alt         95212 17 +    197351 CGGACGACACAGAAGTG
s panTro4.chr3_GL389630_random     57235 17 +    103936 CGGACGACACAGAAGTG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199751925 17 + 202140232 CGGAGGACACAGAAGTG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120744442 17 + 123690457 CAGACGACACAGAAGTG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            5809 17 +    111706 TGGACGACACAGAAGTG
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     40983 17 + 192460366 TGGACGACACAGAAGTG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     37449 17 - 187378091 TGGACGACACAGAAGTG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   388593 17 -  91754291 TGGACGACACAGAAGTG
i chlSab2.chr15                C 0 C 0
s mm10.chr16                    65412875 17 -  98207768 CCAACAACATGGAAGTG
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29049852 17 +  31377067 CAAACCACGTAGAAGAG
i canFam3.chr33                C 0 C 0
e calJac3.chr17                   901412 62 -  74750902 I

a score=359744.000000
s hg38.chr3_KI270935v1_alt         95229 151 +    197351 CCCGCTATGACT-------------CTAGC---------------------------------------------------------ACCGGGCCAC----------------GCCGCTCTGGAAACTCAAACGCTGAGCGCTGAGACCTCTTCTAGGGCCTCAACCCCAGCCGGCCCCATTCCAGAAGCAGAGACCAGGGGAGCCAAGAGAATTTCCCCTGCAAGAGAGACCAGGA
s panTro4.chr3_GL389630_random     57252 151 +    103936 CCCGCTATGACT-------------CCAGC---------------------------------------------------------ACCGGGCCAC----------------GCCGCTCTGGAAGCTCAAACGCTGAGCGCTGAGACCTCTTCTAGGGCCTCAACCCCAGTCGGCCCCATTCCAGAAGCAGAGACCAGGGGAGCCAAGAGAATTTCCCCTGCAAGAGAGACCAGGA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199751942 151 + 202140232 CCCGCTATGACT-------------CCAGC---------------------------------------------------------ACCAGGCCAC----------------GCCGCTCTGGAAACTCAAACGCTGAGCGCTGAGACCTCTTCTAGGGCCTCAACCCCAGCCGGCCCCATTCCAGAAGCAGAGACCAGAGAAGCCAAGAGAATTTCCCCTGCAAGAGAGACCAGGA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120744459 151 + 123690457 CCCGCTATGACT-------------CCAGC---------------------------------------------------------ACCGGGTCAC----------------GCCTCTCTGGAAACTCAAACGCTGAGTGCCGAGACCTCTTCTAGGGCCGCAACCCCAGCCGGCCCCATTCCAGAAGCAGAGCCCAGGGGAGCCAAGGGGATTTCCCCTGCAAGAGAGACCAGGA
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            5826 115 +    111706 CCCGCTATGATT-------------CCAGC---------------------------------------------------------ACCAGGCCAC----------------GCCACTCTGGAAACTCGAACTCTGAGTGCCGAGACCTCCTGTAGGTCCTTAACCCCAGCCGGCCCCATTCCAGAAGC------------------------------------AGAGACCAGGA
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     41000 115 + 192460366 CCCGCTATGATT-------------CCAGC---------------------------------------------------------ACCAGGCCAC----------------GCCGCTCTGGAAACTCGAACTCTGAGTACTGAGACCTCCTGTAGGTCCTTAACCCCAGCCGGCCCCATTCCAGAAGC------------------------------------AGAGACCAGGA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     37466 112 - 187378091 CCCGCTCTGACT-------------CCAGC---------------------------------------------------------ACCAGGCCAC----------------GCCGCTCTGGAAACTCAAACTCTGAGTGCCGAGACCTCCTGTAGGTC---AACCCCAGCCGGCCCCATTCCAGAAGC------------------------------------AGAGACCAGGA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   388610 115 -  91754291 CCCACTATGATT-------------CCAGC---------------------------------------------------------ACCAGGCCAC----------------GCCGCTCTGGAAACTCAAACTCTGAGTGCTGAGACCTCCTGTAGGTCCTCAACCCCAGCCGGCCCCATTCCAGAAGC------------------------------------AGAGACCAGAA
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   901474 151 -  74750902 CTCACTGAGACC-------------TCAGC---------------------------------------------------------ACCCAGCCAC----------------GCTGCTTCAGAATCTCAAACGCGGAGCCCCCAGACCTCTTCAAGGACCTCAGACCCAGCCGGCCCCATTCCGGTAGCAGAGACCAGGGGAATCGAGACCATTTCCCCTGCAACAGAGACCAGGA
i calJac3.chr17                I 62 C 0
s mm10.chr16                    65412892 193 -  98207768 TCCACCTTCACTCAAAGGGACAGGCCCAGC-------------TCAGAGAGAGCT-------------------------------TTCCAGACCACCAACCTGATTCAGTATGTACCTCTAGACACGCAAACTCTCAGCACTGAATCTGCTTCTAATGCTTTAAGTGCAACTAGTATCAGTTCAGAGGTCAATTCCAGAGACACTCAGACCACCTCTTTTGTAACAAAGACCAGGA
i mm10.chr16                   C 0 I 435
s canFam3.chr33                 29049869 208 +  31377067 CCTGCCATGACT-------------CCAGGGGTCAGGACAAATTCAGAAGGAGCCTTCCAGACCGCTGACCTTCTTGAGACCTCTGTGCCAAGCCAC----------------ATGCCTTTGGAAACTCAAACCCTGAGCCCCCAGACGTTTGATTGGACCTTAATCCTGGCCAACAGCAATTCAGAAGCAGAGACCAGGGACACCAAAACCACTTTTCCTGCAATGGAAGGCAGGG
i canFam3.chr33                C 0 C 0

a score=885145.000000
s hg38.chr3_KI270935v1_alt         95380 235 +    197351 GTTTCACAAAAA---CATCTCCCAACTTCATGGTGCTGATCGCCACCTCCGTGGAGACATCAGCCGCCAGTGGCAGCCCCGAGGGAGCTGGAATGACCACAGTTCAGACCATCACAGGCAGTGATCCCAGGGAAGCCATCTTTGACACCCTTTGCACCGATGACAGCTCTGAAGAGGCAAAGACACTCACAATGGACATATTGACATTGGCTCACACCTCCACAGAAGCTAAGGGCCT
s panTro4.chr3_GL389630_random     57403 235 +    103936 GTTTCACAAAAA---CATCTCCCAACTTCGTGGTGCTGATCACCACCTCTGTGGAGACATCAGCCGCCAGTGGCAGCCCCGAGGGAGCTGGAATGACCACAGTTCAGACCATCACACGCAGTGATCCCGAGGAAGCCATCTTTGACACCGTTTGCACCGATGACAGCTCTGAAGAGGCAAAGACACTCACAATGGACATATTGACATTGGCTCACACCTCCACAGAAGCTAAGGGCCT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199752093 235 + 202140232 CTTTCACAAAAA---CACCTCCCGACTTCAGGGTGCTGATCGCCACCTCTGTGGAGACATCAGCCGCCAGTGGCAGCCCCGAGGGAGCTGGAATGACCACAGTTCAGACTGTCACAGGCAGTGATCCAGAGGAAGCCATCTCTGACACCCTTTGCACCGATGACAGCTCTGAAGAGGCAAAGACACTCACAATGGACATATTGACATTGGCTCACACCTCCACAGAAGCTAAGGTGCT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120744610 235 + 123690457 CTTTCACAAAAA---CACCTCCCGACTTCATGGTGCTGATTGCCACCTCTGTGGACACATCAGCCGCCAGTGGAAGCCCCGAGAGAGGCGGAATGACCACAGTTCAGACCGTCACAGGCAGTGATCCCGAGGAAGCCATCTTTGACACCCTTTGCACCGATGACAGCTCTGAAGAGGCAAAGACACTCGCAATGGACATATTGACATTGGCTCACACCTCCAAAGAAGCTAAGGGCCT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            5941 235 +    111706 CTTCCACAGAAA---CACCTCCCGACCGCACGGTGCTGATCACCACCTCTGTGGAGACATCCGCCGCCACTGGCAGCCCCGAGGGACCTGGAATGACCACAGCTGAGACCGTCACAGGCAGTGATCCCAAGGAAGCCGTCTTTGACACCCTTCGCACCGATGATAGCTCTGAAGAGGCAAAGACACGCACAACGGACATATTGACAGTGGCTCACACCTCCACAGAAGCTAAGGGCCT
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     41115 235 + 192460366 CTTCCACAGAAA---CACCTCCCGACCGCACGGTGCTGATCGCCACCTCTGCGGAGACATCCGCCGCCACTGGCAGCCCCGAGGGACCTGGAATGACCACAGCTGAGACCGTCACAGGCAGTGATCCCAAGGAAGCCGTCTTTGACACCCTTCGCACCGATGATAGCTCTGAAGAGGCAAAGACACGCACAACGGACATATTGACATTGGCTCACACCTCCACAGAAGCTAAGGGCCT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     37578 235 - 187378091 CTTCCACCGAAA---CACCTCCCGGCCGCACGGTGCTGATCGCCACCTCTGCGGAGACATCCGCCGCCACTGGCCGCCCCGAGGGACCTGGAATGACCACAGCTGAGACCATCACAGGCAGTGATCCCAAGGAAGCCGTCTTTGACACCCTTCGCACCGATGATAGCTCTGAAGAGGCAAAGACACGCACAACGGACATATCGACGTCGGCTCACACCTCCACAGAAGCTAAGGGCCT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   388725 235 -  91754291 CTTCCACAGAAA---CACCTCCCGACCGCACGGTGCTGATCGCCACCTCTGCGGGGACATCCGCCGCCACTGGCAGCCCCGAGGGACCTGGAATGACCACAGCTGAGACCGTCACAGGCAGTGATCCCAAGGAAGCCGTCTTTGACACCCTTCGCACCGATGATAGCTCTGAAGAGGCAAAGACACGCACAATGGACATATTGACATTGGCTCACACCTCCACAGAAGCTAAGGGCCT
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   901625 238 -  74750902 TCGTCACAAAAATCGTACCTCCCGACTTCGTGGTGGTCATCGCCACCTCCCTGGAGACGTCAGTCACCAGGGGCAGCCCCGAGGGAGCTGGAACGACCACCCTTGAGACCGTCACAGGCCGTGATCCTGAGGACATCGTCTTTGACACCCTGTGCACCGATGACAGCTCTGAAGAGGCAAAGACACTCACTGTTGCCCTGTTGCCGCTGGCTCACGGCTCCGCAGAAGCGGAGGGCCT
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65413520 232 -  98207768 TTTCAATAAGAA---TACCTTCTGACCTCACGGTTATGCACACCATCCCTACAGAGACATTGGCACCAAGCAACAGCCCC---AGAACTGGGATGAGCACTGTCCAAACTGGCACAGTGTGGGACTCCATAGAAGCCGTCTTTGACACCCTTTGTACCGATGACAGCTCTGAAGAGGCAAGGAAGATCACAGTTGACCTCCTGACGTTGGCACACACCTCCACGGAAGTGGAGTACCT
i mm10.chr16                   I 435 C 0
s canFam3.chr33                 29050077 238 +  31377067 CCTTCACCAAAATGACACCTTCCAAGTTCACGGTGGTGATCACCACTCCTATGGAGGCATCGGCCACCAGTGGCAACCCCGTGGGAACTGGGATGACCACAGTTGAGACTGTTACAGGCAGTGATCTTGCAAAATCTGTCTTCGATGCCCTTTGTACTGATGACAGTTCGGAAGAGGCAAAGAGGATCACAATTGACGTCTTGACATTGGCTCACACTTCTGTGGAAGCTGAAGGCCT
i canFam3.chr33                C 0 C 0

a score=705.000000
s hg38.chr3_KI270935v1_alt         95615 2 +    197351 -GT
s panTro4.chr3_GL389630_random     57638 2 +    103936 -GT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199752328 2 + 202140232 -GT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120744845 2 + 123690457 -GT
i nomLeu3.chr11                C 0 C 0
s calJac3.chr17                   901863 2 -  74750902 -GT
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65413752 2 -  98207768 -GT
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29050315 2 +  31377067 GG-
i canFam3.chr33                C 0 C 0
e rheMac3.chrUn_JH291127            6176 0 +    111706 C
e chlSab2.chr15                   388960 0 -  91754291 C
e macFas5.chr2                     41350 0 + 192460366 C
e papAnu2.chr2                     37813 0 - 187378091 C

a score=17741.000000
s hg38.chr3_KI270935v1_alt         95617 55 +    197351 CCTCAGAGAGCAGCGCCTCTTCCGACAGCCCCCATCCAGTCATCACCCCGTCACG
s ponAbe2.chr3                 199752330 55 + 202140232 CCTCAGAGAGCAGCGCCTCTTCCGACAGCCCCCATCCAGTCATCACCCCCTCACT
i ponAbe2.chr3                 C 0 C 0
s mm10.chr16                    65413754 55 -  98207768 CTTCAGAGAGCAGCTCTTCCTCTGACAGTTCAGCTGGGGTCCTCAGCAGCTCACG
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29050317 55 +  31377067 CCTTAAAGAGCAGCGCCTTCTCCGACAGCTCAGTTCTGGCCATCACCGCCCCACG
i canFam3.chr33                C 0 C 0
e rheMac3.chrUn_JH291127            6176  0 +    111706 C
e calJac3.chr17                   901865  0 -  74750902 C
e chlSab2.chr15                   388960  0 -  91754291 C
e macFas5.chr2                     41350  0 + 192460366 C
e papAnu2.chr2                     37813  0 - 187378091 C
e nomLeu3.chr11                120744847  0 + 123690457 C
e panTro4.chr3_GL389630_random     57640  0 +    103936 C

a score=2345.000000
s hg38.chr3_KI270935v1_alt         95672 2 +    197351 GG
s ponAbe2.chr3                 199752385 2 + 202140232 GG
i ponAbe2.chr3                 C 0 C 0
s macFas5.chr2                     41350 2 + 192460366 GG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     37813 2 - 187378091 GG
i papAnu2.chr2                 C 0 C 0
s mm10.chr16                    65413809 2 -  98207768 AG
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29050372 2 +  31377067 GG
i canFam3.chr33                C 0 C 0
e rheMac3.chrUn_JH291127            6176 0 +    111706 C
e calJac3.chr17                   901865 0 -  74750902 C
e chlSab2.chr15                   388960 0 -  91754291 C
e nomLeu3.chr11                120744847 0 + 123690457 C
e panTro4.chr3_GL389630_random     57640 0 +    103936 C

a score=46343.000000
s hg38.chr3_KI270935v1_alt         95674 55 +    197351 CCTCAGAGAGCAGCGCCTCTTCCGACGGCCCCCATCCAGTCATCACCCCGTCACG
s ponAbe2.chr3                 199752387 55 + 202140232 CCTCAGAGAGCAGCGCCTCTTCTGACAGCCCCCATCCAGTCATCACCCCGTCATG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120744847 55 + 123690457 CCTCAGAGAGCGGCGCCTCTTCCGACGGCCCCCATCCGGTCATCACCCCCTCATG
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     41352 55 + 192460366 CCTCAGACAGCAGCGCCTCTTCCGACGGCCCCCATCCAGCCATCACCCCCTCATG
i macFas5.chr2                 C 0 T 57
s papAnu2.chr2                     37815 55 - 187378091 CCTCAGACAGCAGCACCTCTTCCGACGGCCCCCATCCAGCCGTCACCCCCTCATG
i papAnu2.chr2                 C 0 T 57
e rheMac3.chrUn_JH291127            6176  0 +    111706 C
e mm10.chr16                    65413811  0 -  98207768 C
e canFam3.chr33                 29050374  0 +  31377067 C
e calJac3.chr17                   901865  0 -  74750902 C
e chlSab2.chr15                   388960  0 -  91754291 C
e panTro4.chr3_GL389630_random     57640  0 +    103936 C

a score=1144.000000
s hg38.chr3_KI270935v1_alt         95729 2 +    197351 GG
s ponAbe2.chr3                 199752442 2 + 202140232 GG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120744902 2 + 123690457 GT
i nomLeu3.chr11                C 0 T 57
s macFas5.chr2                     41350 2 + 192460366 GG
i macFas5.chr2                 T 57 C 0
s papAnu2.chr2                     37813 2 - 187378091 GG
i papAnu2.chr2                 T 57 C 0
e rheMac3.chrUn_JH291127            6176 0 +    111706 C
e mm10.chr16                    65413811 0 -  98207768 C
e canFam3.chr33                 29050374 0 +  31377067 C
e calJac3.chr17                   901865 0 -  74750902 C
e chlSab2.chr15                   388960 0 -  91754291 C
e panTro4.chr3_GL389630_random     57640 0 +    103936 C

a score=46343.000000
s hg38.chr3_KI270935v1_alt         95731 55 +    197351 CCTCAGAGAGCAGCGCCTCTTCCGACGGCCCCCATCCAGTCATCACCCCGTCACG
s ponAbe2.chr3                 199752444 55 + 202140232 CCTCAGAGAGCAGCGCCTCTTCCGATAGCCCCCATCCAGTCATCACCCCGTCATG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120744847 55 + 123690457 CCTCAGAGAGCGGCGCCTCTTCCGACGGCCCCCATCCGGTCATCACCCCCTCATG
i nomLeu3.chr11                T 57 C 0
s macFas5.chr2                     41352 55 + 192460366 CCTCAGACAGCAGCGCCTCTTCCGACGGCCCCCATCCAGCCATCACCCCCTCATG
i macFas5.chr2                 C 0 T 57
s papAnu2.chr2                     37815 55 - 187378091 CCTCAGACAGCAGCACCTCTTCCGACGGCCCCCATCCAGCCGTCACCCCCTCATG
i papAnu2.chr2                 C 0 T 57
e rheMac3.chrUn_JH291127            6176  0 +    111706 C
e mm10.chr16                    65413811  0 -  98207768 C
e canFam3.chr33                 29050374  0 +  31377067 C
e calJac3.chr17                   901865  0 -  74750902 C
e chlSab2.chr15                   388960  0 -  91754291 C
e panTro4.chr3_GL389630_random     57640  0 +    103936 C

a score=1144.000000
s hg38.chr3_KI270935v1_alt         95786 2 +    197351 GG
s ponAbe2.chr3                 199752499 2 + 202140232 GG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120744902 2 + 123690457 GT
i nomLeu3.chr11                C 0 T 57
s macFas5.chr2                     41350 2 + 192460366 GG
i macFas5.chr2                 T 57 C 0
s papAnu2.chr2                     37813 2 - 187378091 GG
i papAnu2.chr2                 T 57 C 0
e rheMac3.chrUn_JH291127            6176 0 +    111706 C
e mm10.chr16                    65413811 0 -  98207768 C
e canFam3.chr33                 29050374 0 +  31377067 C
e calJac3.chr17                   901865 0 -  74750902 C
e chlSab2.chr15                   388960 0 -  91754291 C
e panTro4.chr3_GL389630_random     57640 0 +    103936 C

a score=45819.000000
s hg38.chr3_KI270935v1_alt         95788 55 +    197351 CCTCAGAGAGCAGCGCCTCTTCCGACGGCCCCCATCCAGTCATCACCCCGTCACG
s ponAbe2.chr3                 199752501 55 + 202140232 CCTCAGAGAGCAGTGCCTCTTCCGATAGCCCCCATCCAGTCATCACCCCGTCATG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120744847 55 + 123690457 CCTCAGAGAGCGGCGCCTCTTCCGACGGCCCCCATCCGGTCATCACCCCCTCATG
i nomLeu3.chr11                T 57 C 0
s macFas5.chr2                     41352 55 + 192460366 CCTCAGACAGCAGCGCCTCTTCCGACGGCCCCCATCCAGCCATCACCCCCTCATG
i macFas5.chr2                 C 0 T 57
s papAnu2.chr2                     37815 55 - 187378091 CCTCAGACAGCAGCACCTCTTCCGACGGCCCCCATCCAGCCGTCACCCCCTCATG
i papAnu2.chr2                 C 0 T 57
e rheMac3.chrUn_JH291127            6176  0 +    111706 C
e mm10.chr16                    65413811  0 -  98207768 C
e canFam3.chr33                 29050374  0 +  31377067 C
e calJac3.chr17                   901865  0 -  74750902 C
e chlSab2.chr15                   388960  0 -  91754291 C
e panTro4.chr3_GL389630_random     57640  0 +    103936 C

a score=1144.000000
s hg38.chr3_KI270935v1_alt         95843 2 +    197351 GG
s ponAbe2.chr3                 199752556 2 + 202140232 GG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120744902 2 + 123690457 GT
i nomLeu3.chr11                C 0 T 57
s macFas5.chr2                     41350 2 + 192460366 GG
i macFas5.chr2                 T 57 C 0
s papAnu2.chr2                     37813 2 - 187378091 GG
i papAnu2.chr2                 T 57 C 0
e rheMac3.chrUn_JH291127            6176 0 +    111706 C
e mm10.chr16                    65413811 0 -  98207768 C
e canFam3.chr33                 29050374 0 +  31377067 C
e calJac3.chr17                   901865 0 -  74750902 C
e chlSab2.chr15                   388960 0 -  91754291 C
e panTro4.chr3_GL389630_random     57640 0 +    103936 C

a score=45702.000000
s hg38.chr3_KI270935v1_alt         95845 55 +    197351 CCTCAGAGAGCAGCGCCTCTTCCGACGGCCCCCATCCAGTCATCACCCCGTCACG
s ponAbe2.chr3                 199752558 55 + 202140232 CCTCAGAGAGCAGCGCCTCTTCCGATAGCCCCCATCCAGTCATCACCCCCTCACT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120744847 55 + 123690457 CCTCAGAGAGCGGCGCCTCTTCCGACGGCCCCCATCCGGTCATCACCCCCTCATG
i nomLeu3.chr11                T 57 C 0
s macFas5.chr2                     41352 55 + 192460366 CCTCAGACAGCAGCGCCTCTTCCGACGGCCCCCATCCAGCCATCACCCCCTCATG
i macFas5.chr2                 C 0 T 57
s papAnu2.chr2                     37815 55 - 187378091 CCTCAGACAGCAGCACCTCTTCCGACGGCCCCCATCCAGCCGTCACCCCCTCATG
i papAnu2.chr2                 C 0 T 57
e rheMac3.chrUn_JH291127            6176  0 +    111706 C
e mm10.chr16                    65413811  0 -  98207768 C
e canFam3.chr33                 29050374  0 +  31377067 C
e calJac3.chr17                   901865  0 -  74750902 C
e chlSab2.chr15                   388960  0 -  91754291 C
e panTro4.chr3_GL389630_random     57640  0 +    103936 C

a score=1144.000000
s hg38.chr3_KI270935v1_alt         95900 2 +    197351 GG
s ponAbe2.chr3                 199752613 2 + 202140232 GG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120744902 2 + 123690457 GT
i nomLeu3.chr11                C 0 T 57
s macFas5.chr2                     41350 2 + 192460366 GG
i macFas5.chr2                 T 57 C 0
s papAnu2.chr2                     37813 2 - 187378091 GG
i papAnu2.chr2                 T 57 C 0
e rheMac3.chrUn_JH291127            6176 0 +    111706 C
e mm10.chr16                    65413811 0 -  98207768 C
e canFam3.chr33                 29050374 0 +  31377067 C
e calJac3.chr17                   901865 0 -  74750902 C
e chlSab2.chr15                   388960 0 -  91754291 C
e panTro4.chr3_GL389630_random     57640 0 +    103936 C

a score=45313.000000
s hg38.chr3_KI270935v1_alt         95902 55 +    197351 CCTCAGAGAGCAGCGCCTCTTCCGACGGCCCCCATCCAGTCATCACCCCGTCACG
s ponAbe2.chr3                 199752615 55 + 202140232 CCTCAGAGAGCAGCACCTCTTCTGACAGCCCCCATCCAGTCATCACCCTGTCACG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120744847 55 + 123690457 CCTCAGAGAGCGGCGCCTCTTCCGACGGCCCCCATCCGGTCATCACCCCCTCATG
i nomLeu3.chr11                T 57 C 0
s macFas5.chr2                     41352 55 + 192460366 CCTCAGACAGCAGCGCCTCTTCCGACGGCCCCCATCCAGCCATCACCCCCTCATG
i macFas5.chr2                 C 0 T 57
s papAnu2.chr2                     37815 55 - 187378091 CCTCAGACAGCAGCACCTCTTCCGACGGCCCCCATCCAGCCGTCACCCCCTCATG
i papAnu2.chr2                 C 0 T 57
e rheMac3.chrUn_JH291127            6176  0 +    111706 C
e mm10.chr16                    65413811  0 -  98207768 C
e canFam3.chr33                 29050374  0 +  31377067 C
e calJac3.chr17                   901865  0 -  74750902 C
e chlSab2.chr15                   388960  0 -  91754291 C
e panTro4.chr3_GL389630_random     57640  0 +    103936 C

a score=1144.000000
s hg38.chr3_KI270935v1_alt         95957 2 +    197351 GG
s ponAbe2.chr3                 199752670 2 + 202140232 GG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120744902 2 + 123690457 GT
i nomLeu3.chr11                C 0 T 57
s macFas5.chr2                     41350 2 + 192460366 GG
i macFas5.chr2                 T 57 C 0
s papAnu2.chr2                     37813 2 - 187378091 GG
i papAnu2.chr2                 T 57 C 0
e rheMac3.chrUn_JH291127            6176 0 +    111706 C
e mm10.chr16                    65413811 0 -  98207768 C
e canFam3.chr33                 29050374 0 +  31377067 C
e calJac3.chr17                   901865 0 -  74750902 C
e chlSab2.chr15                   388960 0 -  91754291 C
e panTro4.chr3_GL389630_random     57640 0 +    103936 C

a score=46226.000000
s hg38.chr3_KI270935v1_alt         95959 55 +    197351 CCTCAGAGAGCAGCGCCTCTTCCGACGGCCCCCATCCAGTCATCACCCCGTCACG
s ponAbe2.chr3                 199752672 55 + 202140232 CCTCAGACAGCAGCGCCTCTTCCGATGGCCCCCATCCAGTCATCACCCCCTCACT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120744847 55 + 123690457 CCTCAGAGAGCGGCGCCTCTTCCGACGGCCCCCATCCGGTCATCACCCCCTCATG
i nomLeu3.chr11                T 57 C 0
s macFas5.chr2                     41352 55 + 192460366 CCTCAGACAGCAGCGCCTCTTCCGACGGCCCCCATCCAGCCATCACCCCCTCATG
i macFas5.chr2                 C 0 T 57
s papAnu2.chr2                     37815 55 - 187378091 CCTCAGACAGCAGCACCTCTTCCGACGGCCCCCATCCAGCCGTCACCCCCTCATG
i papAnu2.chr2                 C 0 T 57
e rheMac3.chrUn_JH291127            6176  0 +    111706 C
e mm10.chr16                    65413811  0 -  98207768 C
e canFam3.chr33                 29050374  0 +  31377067 C
e calJac3.chr17                   901865  0 -  74750902 C
e chlSab2.chr15                   388960  0 -  91754291 C
e panTro4.chr3_GL389630_random     57640  0 +    103936 C

a score=1144.000000
s hg38.chr3_KI270935v1_alt         96014 2 +    197351 GG
s ponAbe2.chr3                 199752727 2 + 202140232 GG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120744902 2 + 123690457 GT
i nomLeu3.chr11                C 0 T 57
s macFas5.chr2                     41350 2 + 192460366 GG
i macFas5.chr2                 T 57 C 0
s papAnu2.chr2                     37813 2 - 187378091 GG
i papAnu2.chr2                 T 57 C 0
e rheMac3.chrUn_JH291127            6176 0 +    111706 C
e mm10.chr16                    65413811 0 -  98207768 C
e canFam3.chr33                 29050374 0 +  31377067 C
e calJac3.chr17                   901865 0 -  74750902 C
e chlSab2.chr15                   388960 0 -  91754291 C
e panTro4.chr3_GL389630_random     57640 0 +    103936 C

a score=45739.000000
s hg38.chr3_KI270935v1_alt         96016 55 +    197351 CCTCAGAGAGCAGCGCCTCTTCCGACGGCCCCCATCCAGTCATCACCCCGTCACG
s ponAbe2.chr3                 199752729 55 + 202140232 CCTCAGAGAGCAGCACCTCTTCTGACAGCCCCCATCCAGTCATCACCCCATCACG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120744847 55 + 123690457 CCTCAGAGAGCGGCGCCTCTTCCGACGGCCCCCATCCGGTCATCACCCCCTCATG
i nomLeu3.chr11                T 57 C 0
s macFas5.chr2                     41352 55 + 192460366 CCTCAGACAGCAGCGCCTCTTCCGACGGCCCCCATCCAGCCATCACCCCCTCATG
i macFas5.chr2                 C 0 T 57
s papAnu2.chr2                     37815 55 - 187378091 CCTCAGACAGCAGCACCTCTTCCGACGGCCCCCATCCAGCCGTCACCCCCTCATG
i papAnu2.chr2                 C 0 T 57
e rheMac3.chrUn_JH291127            6176  0 +    111706 C
e mm10.chr16                    65413811  0 -  98207768 C
e canFam3.chr33                 29050374  0 +  31377067 C
e calJac3.chr17                   901865  0 -  74750902 C
e chlSab2.chr15                   388960  0 -  91754291 C
e panTro4.chr3_GL389630_random     57640  0 +    103936 C

a score=1144.000000
s hg38.chr3_KI270935v1_alt         96071 2 +    197351 GG
s ponAbe2.chr3                 199752784 2 + 202140232 GG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120744902 2 + 123690457 GT
i nomLeu3.chr11                C 0 T 57
s macFas5.chr2                     41350 2 + 192460366 GG
i macFas5.chr2                 T 57 C 0
s papAnu2.chr2                     37813 2 - 187378091 GG
i papAnu2.chr2                 T 57 C 0
e rheMac3.chrUn_JH291127            6176 0 +    111706 C
e mm10.chr16                    65413811 0 -  98207768 C
e canFam3.chr33                 29050374 0 +  31377067 C
e calJac3.chr17                   901865 0 -  74750902 C
e chlSab2.chr15                   388960 0 -  91754291 C
e panTro4.chr3_GL389630_random     57640 0 +    103936 C

a score=46096.000000
s hg38.chr3_KI270935v1_alt         96073 57 +    197351 CCTCAGAGAGCAGCGCCTCTTCCGACGGCCCCCATCCAGTCATCACCCCGTCACGGG
s ponAbe2.chr3                 199752786 57 + 202140232 CCTCAGAGAGCAGCACCTCTTCCGATGGCCCCCAACCAGTCATCACCCCATCACGGG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120744847 57 + 123690457 CCTCAGAGAGCGGCGCCTCTTCCGACGGCCCCCATCCGGTCATCACCCCCTCATGGT
i nomLeu3.chr11                T 57 C 0
s macFas5.chr2                     41352 57 + 192460366 CCTCAGACAGCAGCGCCTCTTCCGACGGCCCCCATCCAGCCATCACCCCCTCATGGT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     37815 57 - 187378091 CCTCAGACAGCAGCACCTCTTCCGACGGCCCCCATCCAGCCGTCACCCCCTCATGGT
i papAnu2.chr2                 C 0 C 0
e rheMac3.chrUn_JH291127            6176  0 +    111706 C
e mm10.chr16                    65413811  0 -  98207768 C
e canFam3.chr33                 29050374  0 +  31377067 C
e calJac3.chr17                   901865  0 -  74750902 C
e chlSab2.chr15                   388960  0 -  91754291 C
e panTro4.chr3_GL389630_random     57640  0 +    103936 C

a score=4410.000000
s hg38.chr3_KI270935v1_alt         96130 6 +    197351 CCTCAG
s panTro4.chr3_GL389630_random     57640 6 +    103936 CCTCAG
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120744904 6 + 123690457 CCCCGG
i nomLeu3.chr11                C 0 T 57
s macFas5.chr2                     41409 6 + 192460366 CCCCGG
i macFas5.chr2                 C 0 T 57
s papAnu2.chr2                     37872 6 - 187378091 CCCCGG
i papAnu2.chr2                 C 0 T 57
e rheMac3.chrUn_JH291127            6176 0 +    111706 C
e mm10.chr16                    65413811 0 -  98207768 C
e canFam3.chr33                 29050374 0 +  31377067 C
e calJac3.chr17                   901865 0 -  74750902 C
e chlSab2.chr15                   388960 0 -  91754291 C
e ponAbe2.chr3                 199752843 0 + 202140232 C

a score=40288.000000
s hg38.chr3_KI270935v1_alt         96136 49 +    197351 AGAGCAGCGCCTCTTCCGACGGCCTCCATCCAGTCATCACCCCGTCACG
s panTro4.chr3_GL389630_random     57646 49 +    103936 AGAGCAGCGCCTCTTCCGACGGCCCCCATCCAGTCATCACCCTGTCACG
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120744853 49 + 123690457 AGAGCGGCGCCTCTTCCGACGGCCCCCATCCGGTCATCACCCCCTCATG
i nomLeu3.chr11                T 57 C 0
s macFas5.chr2                     41358 49 + 192460366 ACAGCAGCGCCTCTTCCGACGGCCCCCATCCAGCCATCACCCCCTCATG
i macFas5.chr2                 T 57 T 57
s papAnu2.chr2                     37821 49 - 187378091 ACAGCAGCACCTCTTCCGACGGCCCCCATCCAGCCGTCACCCCCTCATG
i papAnu2.chr2                 T 57 T 57
e rheMac3.chrUn_JH291127            6176  0 +    111706 C
e mm10.chr16                    65413811  0 -  98207768 C
e canFam3.chr33                 29050374  0 +  31377067 C
e calJac3.chr17                   901865  0 -  74750902 C
e chlSab2.chr15                   388960  0 -  91754291 C
e ponAbe2.chr3                 199752843  0 + 202140232 C

a score=1144.000000
s hg38.chr3_KI270935v1_alt         96185 2 +    197351 GG
s panTro4.chr3_GL389630_random     57695 2 +    103936 GG
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120744902 2 + 123690457 GT
i nomLeu3.chr11                C 0 T 57
s macFas5.chr2                     41350 2 + 192460366 GG
i macFas5.chr2                 T 57 C 0
s papAnu2.chr2                     37813 2 - 187378091 GG
i papAnu2.chr2                 T 57 C 0
e rheMac3.chrUn_JH291127            6176 0 +    111706 C
e mm10.chr16                    65413811 0 -  98207768 C
e canFam3.chr33                 29050374 0 +  31377067 C
e calJac3.chr17                   901865 0 -  74750902 C
e chlSab2.chr15                   388960 0 -  91754291 C
e ponAbe2.chr3                 199752843 0 + 202140232 C

a score=67848.000000
s hg38.chr3_KI270935v1_alt         96187 55 +    197351 CCTCAGAGAGCAGCGCCTCTTCCGACGGCCCCCATCCAGTCATCACCCCGTCACG
s panTro4.chr3_GL389630_random     57697 55 +    103936 CCTCAGAAAGCGGCGCCTCTTCCGACGGCCCCCATCCAGTCATCACCCTGTCACG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199752843 55 + 202140232 CCTCAGAGAGCAGCACCTCTTCCGATGGCCCCCAACCAGTCATCACCCCATCACG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120744847 55 + 123690457 CCTCAGAGAGCGGCGCCTCTTCCGACGGCCCCCATCCGGTCATCACCCCCTCATG
i nomLeu3.chr11                T 57 C 0
s macFas5.chr2                     41352 55 + 192460366 CCTCAGACAGCAGCGCCTCTTCCGACGGCCCCCATCCAGCCATCACCCCCTCATG
i macFas5.chr2                 C 0 T 57
s papAnu2.chr2                     37815 55 - 187378091 CCTCAGACAGCAGCACCTCTTCCGACGGCCCCCATCCAGCCGTCACCCCCTCATG
i papAnu2.chr2                 C 0 T 57
e rheMac3.chrUn_JH291127            6176  0 +    111706 C
e mm10.chr16                    65413811  0 -  98207768 C
e canFam3.chr33                 29050374  0 +  31377067 C
e calJac3.chr17                   901865  0 -  74750902 C
e chlSab2.chr15                   388960  0 -  91754291 C

a score=4102.000000
s hg38.chr3_KI270935v1_alt         96242 2 +    197351 GG
s panTro4.chr3_GL389630_random     57752 2 +    103936 GG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199752898 2 + 202140232 GG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120744902 2 + 123690457 GT
i nomLeu3.chr11                C 0 T 57
s rheMac3.chrUn_JH291127            6176 2 +    111706 GG
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     41350 2 + 192460366 GG
i macFas5.chr2                 T 57 C 0
s papAnu2.chr2                     37813 2 - 187378091 GG
i papAnu2.chr2                 T 57 C 0
s chlSab2.chr15                   388960 2 -  91754291 GG
i chlSab2.chr15                C 0 C 0
e mm10.chr16                    65413811 0 -  98207768 C
e canFam3.chr33                 29050374 0 +  31377067 C
e calJac3.chr17                   901865 0 -  74750902 C

a score=171187.000000
s hg38.chr3_KI270935v1_alt         96244 57 +    197351 CCTCAGAGAGCAGCGCCTCTTCCGACGGCCCCCATCCAGTCATCACCCCCTCATGGT
s panTro4.chr3_GL389630_random     57754 57 +    103936 CCTCAGAAAGCGGCGCCTCTTCTGACGGCCCCCATCCAGTCATCACCCCCTCATGGT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199752900 57 + 202140232 CCTCAGACAGCAGCGCCTCTTCTGATAGCCCCCATCCAGTCATCACCCCCTCATGGT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120744847 57 + 123690457 CCTCAGAGAGCGGCGCCTCTTCCGACGGCCCCCATCCGGTCATCACCCCCTCATGGT
i nomLeu3.chr11                T 57 C 0
s rheMac3.chrUn_JH291127            6178 57 +    111706 CCTCAGACAGCAGCGCCTCTTCCGACGGCCCCCATCCAGCCATCACCCCCTCATGGT
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     41352 57 + 192460366 CCTCAGACAGCAGCGCCTCTTCCGACGGCCCCCATCCAGCCATCACCCCCTCATGGT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     37815 57 - 187378091 CCTCAGACAGCAGCACCTCTTCCGACGGCCCCCATCCAGCCGTCACCCCCTCATGGT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   388962 57 -  91754291 CCTCAGACAGCAGCACCTCTTCCGACGGCCCCCATCCAGCCATCACCCCCTCATGGT
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   901865 57 -  74750902 CCTCAGGGAGCAGCGCTTCTTCCCACGGCTCCCGGCCAGCCATCACCACCTCATGGA
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65413811  0 -  98207768 C
e canFam3.chr33                 29050374  0 +  31377067 C

a score=1065650.000000
s hg38.chr3_KI270935v1_alt         96301 290 +    197351 CCCCGGGATCTGACGTCACTCTCCTCGCTGAAGCCCTGGTGAC------TGTCACAAACATCGAGGTTATTAATTGCAGCATCACAGAAATAGAAACAACGACTTCCAGCATCCCTGGGGCCTCAGACACAGATCTCATCCCCACGGAAGGGGTGAAGGCCTCGTCCACCTCCGATCCACCAGCTCTGCCTGACTCCACTGAAGCAAAACCACACATCACTGAGGTCACAGCCTCTGCCGAGACCCTGTCCACAGCCGGCACCACAGAGTCAGCTGCACCTGATGCCACGGTTGGG
s panTro4.chr3_GL389630_random     57811 290 +    103936 CCCCGGGATCTGATGTCACTCTCCTCGCTGAAGCCCTGGTGAC------TGTCACCCACATTGAGGTTATCAATTGCAGCATCACAGAAATAGAAACAATGACTTCCAGCATCCCTGGGGCCTCAGACACAGATCTCATCCCCACGGAAGGGGTGAAGGCCTCGTCCACCTCCGATCCACCAGCTCTGCCTGACTCCACTGATGCAAAACCACACATCACTGAGGCCACAGCCTCTGCCGAGACCCTGTCCACAGCTGGCACCACAGAGTCAGCCGCACCTGATGCCACGGTTGGG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199752957 290 + 202140232 CCCCGGGATCTGACGTCACTCTCCTCACTGAAGCCCTGGTGAC------CGTCACCCACATCGAGGTTATCAATTGCAGCATCACAGAAATAGAAACACTGACTTCCAGCATCCCTGGGGCCTCAGACAGAGATCACGTCCCCACGGAAGGGGTGAAGGCCTCGTTCACCTCTGATCCACCAGCTCTGCCTGACTCCACTGACGCAAAACCACACATCACTGAGGCCACAGCCTCTGCCGAGACCCTGTCCACAGCCGGCACCACAGAGTCAGCCGCACCTGGTGCCACAGTTGGG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120744904 290 + 123690457 CCCCGGGATCTGACGTCACTCTGCTCGCTGAAGCCCTGGTGAC------CGTCACCCACATCGAGGTTATCAATTGCAGCATCACAGAAATAGAAACAACGACTTCCAGCATCCCTGGGGCCTCAGACACAGATCACATCCCCACGGAAGGGGTGAAGGCCTCGCCCACCTCCCATCCACCAGCTCTGCCTGACTCCACTGACGCAAAACCACACGTCACGGAGGCCACAGCCTCTCCCGAGACCCTGTCCACAGCCGGCACCGCAGAGTCAGCTGCACCTGATGCCACGGTTGGG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            6235 290 +    111706 CCCCGGGATCTGACGTCGCTCTCCTCACTGAAGCCCTGGTGAC------CGTCACCCACATCGAGGTTATCAATTGCAGCATCACAGAAACAGAAACAACGACTTCCAGCATCCCTGGGGCCTCAGACACAGATCACATCCCCACGGAAGGGATGAAGGCCTCGCCCACCTCCAATCCACCAGCTCTGCCTGACTCCACTGATGCAAAACCACACAGCACCGAGGCCACAGCCTCTGCCGAGACCCTGTCCACAGCCGGCACCACAGAGTCAACCGCACCTGATGCCACGGTTGGG
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     41409 290 + 192460366 CCCCGGGATCTGACGTCGCTCTCCTCACTGAAGCCCTGGTGAC------CGTCACCCACATTGAGGTTATCAATTGCAGCATCACAGAAACAGAAACAACGACTTCCAGCATCCCTGGGGCCTCAGACACAGATCACATCCCCACGGAAGGGATGAAGGCCTCGCCCACCTCCAATCCACCAGCTCTGCCTGACTCCACTGATGCAAAACCACACAGCACTGAGGCCACAGCCTCTGCCGAGACCCTGTCCACAGCCGGCACCACAGAGTTAACCGCACCTGATGCCACGGTTGGG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     37872 290 - 187378091 CCCCGGGATCTGACGTCGCTCTCCTCGCTGGAGCCCTGGTGAC------CGTCACCCACATCGAGGTTATCCATTGCAGcgtcacagaaacagaaacaaggaCTTCCAGCATCCCTGGGGCCTCAGACGCAGATCACATCCCCACGGAAGGGATGAAGGCCTCGCCCACCTCCAATCCACCAGCTCTGCCTGACTCCACTGATGCAAAACCACACAGCCCCGAGGCCACAGCCTCTGCCGAGACCCTGTCCACAGCCGGCACCACAGAGTCAACCGCACCTGATGCCACGGTTGGG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   389019 290 -  91754291 CCCCGGGATCTGACGTCACTCTCCTCACTGAAGCCATGGTGAC------CGTCACCCACATCGAGGTTATCAATTGCAGCATCACAGAAACAGAAACGACGACTTCCAGCATCCCTGGGGCCTCAGACACAGATCACATCCCCACGGAAGGGATGAAGGCCTCGCCCACCTCCAATCCACCAGCTCTGCCTGACTCCACTGAGGCAAAACCACACAGCACCGAGGCCACAGCCTCTGCCGAGACCCTGTCCACAGCCGGCACCACAGAGTCAACCGCACCTGATGCCACGGTTGGG
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   901922 290 -  74750902 CCCCCGCATCTGACGTCACTGTCCTCACCGAAGCGCTGGTGGC------TGTCACCCACATGGAGGTTATCAACTGCAGCATCCCAGAAATAGAAACAGCCACTTCCATCATCGCTGGGGCCCGAGACACAGACCACATCTCCACAGCAGCAGTGAAGGACTCGCCCACCTTGCATCCACCAGCTCTGCCCGACTCCACTGCCACAGAACCACACGTCACGGAGGCCACGGCCTCCGCTGAGACCCCGTCAACAGCCAGCGCCACAGAGTCAGCCACACCTGATGCCACAGTTAAG
i calJac3.chr17                C 0 I 2871
s mm10.chr16                    65413811 281 -  98207768 TCCTGGGACCCGACAGTGCAACTCCAGCCAAGGGGTTGGTTGCCTTCAACATCACTCATATTAAACTCAGCAACTGCA---TCACAGAAATAGAAACAACCA---TCACCATCTCTGGGGCCCCAGGCGCGAGCCTCAGCCCTACAGAAGCGACGGCAGCTTTGTTCACTTCTGAGATATTAACTTTGCCTCCACCCACTGAGGCAAAACCAATTTTCCCCGAGACCACAAGCTTATCTGGGATCCTGTCAACTGCTGGCACCCCGG---------CCCTTGCCACCACCCTTGAG
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29050374 290 +  31377067 CCCTCGCACCTGACAAGAGCACTCCGGCTAAGGGTTTGTTTGCCTACAGCATCACTGACATTGAGGTTGCCAACTGCAGCATTCTAGAAATAGAAACA---ACTGCCACCACCCTTGGGACCTTGGACATGGATCTCAACCCCAC---AGGGGGAGAGGTCCTATCTCCCCCTGTGGTGTCAGCTTTGCTCAATTCCACTGAAGCAGAATCACACATCACCGAGACCACACCATCCGCGGAGACCTTGTCAGCAGCCAGTGCCACAGAGGCAGCCACACCTGATACCACAGTTGAG
i canFam3.chr33                C 0 C 0

a score=753633.000000
s hg38.chr3_KI270935v1_alt         96591 253 +    197351 ACCCCACTCCCCACTAACAGCGCCACAGAAAGAGAAGTGACAGCACCCGGGGCCACGACCCTCAGTGGAGCTCTGGTCACAGTTAGCAGGAATCCCCTTGAAGAAACCTCAGCCCTCTCTGTTGAGACACCAAGTTACGTCAAAGTCTCAGGAGCAGCTCCGGTCTCCATAGAGGCTGGGTCAGCAGTGGGCAAAACAACTTCCTTTGCTGGGAGCTCTGCTTCCTCCTACAGC------CCCTCGGAAGCCGCCCTCA---
s panTro4.chr3_GL389630_random     58101 247 +    103936 ACCCCACTCCCCACCAACAGCACCATAGAAAGAGAAGTGACAGCACCCAGGGCCATGACCCTCAGTGGAGCTCTGGCCACAG------GGAATCCCCTGGAAGAAACCTCAGCCCTCTCTGTTGAGACACCAAGTTACGTGAAAGTCTCAGGAGCAGCTCCGGTCTCCATAGAGGCTGGGTCAGCAGTGGGCAAAACAACTTCCTTTGCTGGGAGCTCCGCTTCCTCCTACAGC------CCCTCGGAAGCCGCCCTCA---
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199753247 253 + 202140232 ACCCCACTCCCCACCAACAGCACCACAGGAAGCAAAGTGACAGCACCCAGGGCCACGACCCTCAGTGGAGCTCTGGCCACAGTTAGTGGGAATCCCCTGGAAGAAACCTCAGCCCTCTCTGTTGAGACACCAAGTTACGTCAAAGTCTCAGGAGCAGCTCTGGTCTCCATAGAGGCTGGGTCAGCAGTGGGCAAAACTACTTCCTTTGCTGGGAGCTCTGCTTCCTCCTACAGC------CCCTCGGAAGCCACCCTCA---
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120745194 253 + 123690457 ACCCCACTCCCCACCAACAGTGCCACGGAAAGAGAAGTGACAGCACCCAGGGCCACAACCCTCAGTGGAGCTCTGGCCACAGTTAGCGGGAATCCCCTGGAAGAAACCTCAGCCCTCTCTGTTGAGACACCAAGTTACGTCAGAGTCTCAGGAGCAGCCCCGGTCTCCATAGAAGCTGGGTCAGCAGTGGACAAAAGCACTTCCTTTGCTGGGAGCTCTGCTTCCTTCTACAGC------CCCTCGGAAGCCGCCCTCG---
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            6525 253 +    111706 ACCCCACTCCCCACCAACAGCGCCACAGAAAGAGAAGTGACAGCACCCAGGGCCACGACCCTCAGTGGAACTCTGGCCACAGTTAGCGGGAGTCCCCTGGAAGAAACCTCAGCCCTCTCTGTGGAGACACCAAGTTACGTCAAAGTCTCAGGAGCAGCTCTCGTCTCCACAGAGGCCGGGTCAACAGTGGGCAAAACAGCTTCCTTTGCTGGGGGCTGTGCTTCCTCCTACAGC------CCCTCAAAAGCCACCATCA---
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     41699 253 + 192460366 ACCCCACTCCCCACCAACAGCGCCACAGAAAGAGAAGTGACAGCACCCAGGGCCACGACCCTCAGTGGAACTCTGGCCACAGTTAGCGGGAGTCCCCTGGAAGAAACCTCAGCCCTCTCTGTGGAGACACCAAGTTACGTCAAAGTCTCAGGAGCAGCTCTCGTCTCCACAGAGGCCGGGTCAACAGTGGGCAAAACAGCTTCCTTTGCTGGGGGCTGTGCTTCCTCCTACAGC------CCCTCAAAAGCCACCATCA---
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     38162 253 - 187378091 ACCCCACTCCCCACCAACAGCGCCACAGAAAGAGAAGTGACAGCACCCAGGGCCACGACCCTCAGTGGAACTCTGGCCACAGGTAGCGGGAATCCCCTGGAAGAAACCTCAGCCCTCTCTGCGGAGACACCAAGTTACGTCAAAGTCTCAGGAGCAGCTCTCGTCCCCACAGAGGCCGGGTCAACAGTGGGCAAAACAGCTTCCTTTGCTGGGGGCTGTGCTTCCTCCTACAGC------CCCTCAGAAGCCATTATCA---
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   389309 253 -  91754291 ACCCCACTCCCCACCAACAGCGCCACAGAAAGAGAAGTGACAGCACCCAGGGCCACGACCCTCAGTGGAACTCTGTCCACAGGTAGCGGGAATCCCCTGGAAGAAACCTCAGCCCTCTCTGTTGAGACACCAAGTTGCGTCAAAGTCTCAGGAGCAGCTCTCGTCCCCACAGAGGCCGGGTCAGCAGTGTGCAAAACAGCTTCCTTTGCTGGGGGCTCTGCTTCCTCCTGCAGC------CCCTCAAAAACCACCATCA---
i chlSab2.chr15                C 0 C 0
s mm10.chr16                    65414092 256 -  98207768 GGGACAGTCTCCACTAGTGCAATCACAGAAAGCGAAACAGCAGTGGCCCAGACTCTTACCTCTGTTGGAACTTCGGTGACAGTTAGAAGGAACCCCCTGGAAAACACTTCAACACTCTCTATTGAGACACAAAGCCACACTGAGGTCTTGGGCACCATCACAGTCCCCATGGTTGCTGGATCAACAATGGGAGAAGCAGCCTCCTTCGT---GAGTTTCACGGCTCTCGACAGCAGCAGTCTCTCAGTGGTGGTCACCA---
i mm10.chr16                   C 0 I 3
s canFam3.chr33                 29050664 256 +  31377067 ACCCCACTAACTGCCAATAGCCCTACAGAAGGAGAAGCAACAGCAGCTACGACCACCACCCCCAGCACAACTTTGGTCTCAGTCAGCGTGAACCCCTTGGAAGAAGCTTCAGTCCTCTCTATTGAGACGACAAGCCACACCAAGGTCTTGGGAGCAGTGACAGTCTCCACAGAGGCTGGGTTAACAGTGGGGAAAGCGACTTCACCTGCTGGGCTCTCAACTATGGCCCACAGC------TACAGCCACATCGCCACTAGCA
i canFam3.chr33                C 0 C 0
e calJac3.chr17                   902212 2871 -  74750902 I

a score=86200.000000
s hg38.chr3_KI270935v1_alt         96844 21 +    197351 AGAACTTCACCCCTTCAGAGA
s panTro4.chr3_GL389630_random     58348 21 +    103936 AGAACTTCACCCCTTCAAAGA
i panTro4.chr3_GL389630_random C 0 I 25
s ponAbe2.chr3                 199753500 21 + 202140232 AGATCTTCACCCCTTCAGAGA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120745447 21 + 123690457 AGAACTTCACCCCTTCAGAGA
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            6778 21 +    111706 AGAACTTCACCCCTTCAGAGA
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     41952 21 + 192460366 AGAACTTCACCCCTTCAGAGA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     38415 21 - 187378091 AGAACTTCACCCCTTCAGAGA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   389562 21 -  91754291 AGAACTTCACCCCTTCAGAGA
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   905083 21 -  74750902 AGAACTTCACCCCGTCAGAGA
i calJac3.chr17                I 2871 C 0
s mm10.chr16                    65414351 21 -  98207768 AGAGCTCTGCTACCTCAGAGA
i mm10.chr16                   I 3 C 0
s canFam3.chr33                 29050920 21 +  31377067 AGAGCACCACCCCCTCACAGC
i canFam3.chr33                C 0 C 0

a score=55636.000000
s hg38.chr3_KI270935v1_alt         96865 23 +    197351 CACCGACCATGGACATCGCAACC
s ponAbe2.chr3                 199753521 23 + 202140232 CACCGACCACGGACATCACAACC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120745468 23 + 123690457 CACCCACCACGGGCATCACGACC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            6799 23 +    111706 CACCGACTGCCGACGTCACAACC
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     41973 23 + 192460366 CACCGACTGCCGACGTCACAACC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     38436 23 - 187378091 CACCGACTGCAGACGTCACAACC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   389583 23 -  91754291 CACCGACTGCAGACGTCACAACC
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   905104 20 -  74750902 ---CCACCATGGACTTCACAGCC
i calJac3.chr17                C 0 I 1
s mm10.chr16                    65414372 23 -  98207768 CTTTAACCACAGGCAATACAACC
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29050941 23 +  31377067 CTTCTACCGCGGATGGCACAACC
i canFam3.chr33                C 0 C 0
e panTro4.chr3_GL389630_random     58369 25 +    103936 I

a score=203792.000000
s hg38.chr3_KI270935v1_alt         96888 59 +    197351 AAGGGGCCCTTCCCCACCAGCA-GGGACCCTCTTCC-TTCTGT---------------------------------------CCCTCCGACTACAACCAA
s panTro4.chr3_GL389630_random     58394 62 +    103936 AAGGGGCCCTTCCCCAACAGCAGGGGACCCTCTTCCTTTCTGTC--------------------------------------CCCTCCGAATACAACCAA
i panTro4.chr3_GL389630_random I 25 I 2322
s ponAbe2.chr3                 199753544 59 + 202140232 CAGGGGCCCTTCCCCACCAGCA-GGGACCCTCTTCC-TTCTGT---------------------------------------CCCTCCGACTACAACCAA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120745491 98 + 123690457 AAGGGGCCCTTCCCCACCAGCA-GGGACCCTCTTCC-TTCTGTCCCTCCGACTACAACCAGCAGGGACCCTCTTCCTTCTGTCCCTCCGACTACAACCAG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            6822 59 +    111706 AAGGGGCCCTTCCCCACCAGCA-GGGACCCTCTTCC-TTCTGT---------------------------------------CCCTCCGACTACAGCCAA
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     41996 59 + 192460366 AAGGGGCCCTTCCCCACCAGCA-GGGACCCTCTTCC-TTCTGT---------------------------------------CCCTCCGACTACAGCCAA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     38459 59 - 187378091 AAGGGGCCCTTCCCCACCAGCA-GGGACCGTCTTCC-TTCTGT---------------------------------------CCCTCCGACTACAGCCAA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   389606 59 -  91754291 AAGGGGCCCTTCCCCACCAGCA-GGGACCCTCTTCC-TTCTGT---------------------------------------CCCTCCGACTACAGCCAA
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   905125 59 -  74750902 AGGGCGCCTTTCCCCACCAGCA-GGGACCCTCTTCC-TTCTAT---------------------------------------CCATCCGACTACAGCCAG
i calJac3.chr17                I 1 C 0
s mm10.chr16                    65414395 59 -  98207768 AACAGCTCCTTCCTCACAGAGA-GCCACCCTCCTTT-TTCTAT---------------------------------------CTATTCAACTACAGCTAG
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29050964 59 +  31377067 AATGAGTCTGTCCCCATCACCA-GGAGCCCCGCTCC-TTCTGT---------------------------------------CCAGCTGACCAGGGCCAA
i canFam3.chr33                C 0 C 0

a score=384020.000000
s hg38.chr3_KI270935v1_alt         96947 134 +    197351 CAGCAGCCGAGGGACGAACAGCACCTTAGCCAAGATCACAACCTCAGCGAAGACCACGA---------------------TGAAGCCCCCAACAGCCACGCCCACGACTGCCCGGACGAGGCCGACCACAGACGTGAGTGCAGGTAAGT--GGCTCC
s ponAbe2.chr3                 199753603 134 + 202140232 CAGCAGCCGAGGGATGAACAGCACCTTAGCCAAGACCACAACCTCAGCAAAGACCCCCA---------------------TGAAACCCCCAACAGCCACGCCCACCACTGCTCGGACGAGGCTGACCACAGACGTGAGTGCAGGTAAGT--GGCTCC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120745589 134 + 123690457 CAGCAGCCAAGGGACGAACAGCTCCTTAGCCAAGACCACGACCTCAGCGAAAACCCTGA---------------------TGAAGCCCCCAACAGCCATGCCCACCACTGCTCGGACGAGGCCGACCGCAGACAGGAGTGCAGGTAAGT--GGTTCT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            6881 134 +    111706 CAGCAGCCGAGGGATGAACAGCACCTTAGCCAAGACCACAGCCTCAGCGAAGACCCCGA---------------------TGAAGCCCCCAACAGCCACGCCCACCACTGCTCGGACGAGGCCGACCACAGACGTGAGTGCAGGTAAGT--GGCTCC
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     42055 134 + 192460366 CAGCAGCCGAGGGATGAACAGCACCTTAGCCAAGACCACAGCCTCAGCGAAGACCCCGA---------------------TGAAGCCCCCAACAGCCACGCCCACCACTGCTCGGACGAGGCCGACCACAGGCGTGAGTGCAGGTAAGT--GGCTCC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     38518 134 - 187378091 CAGCAGCCGAGGGACGAACAGCACCTTAGCCAAGACCACAGCCTCAGCGAAGACCCCGA---------------------TGAAGCCCCCAACAGCCACGCCCACCACTGCTTGGAGGAGGCCGACCACAGACGTGAGTGCGGGTAAGT--GGCTCC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   389665 134 -  91754291 CAGCAGCCGAGGGACGAACAGCACCTTAGCCAAGACCACAGCCTCAGCGAAGACCCCAA---------------------TGAAGCCCCCAACAGCCACGCCCACCGCTGCTCGGACGAGGCCGACCACAGACGTGAGTGCAGGTAAGT--GGCTCC
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   905184 116 -  74750902 CAGCAGCCCAGGAACCAGCAGCACCTCAGCCAAG------------------ACCCCGA---------------------TGGAGCCCCTGACAGCCATGTCCCCCACTGCCCGGACGGGGCAGACCACAAACGTCAGCGCAGGTAGGT--GGCCCC
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65414454 133 -  98207768 CACCAGCAAAAACCCAAACATCACCTTAACCAAGACCACAGCCTCACCAAAGCCCCCGA---------------------CGCATCCTACAACATCTGCATCC---ACTGCTTGGATAAGGAAAACCACAAAACATGATCCAGGTAAGCAAAACTCC
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29051023 155 +  31377067 CAGCAGCCAAGAGGCAAACATCACCTTATTTAGGACCACAGCCTTAGCAAAGACCTTGAAGACAGCCAGCGTGGCTGGAGGGAAGACCCCAACAGCTATGCCCACTGTGGTTCAGACAAGGTGGACCACAGAAGCCACTGCGGGTAAGT--GGCTCC
i canFam3.chr33                C 0 C 0
e panTro4.chr3_GL389630_random     58456 2322 +    103936 I

a score=253883.000000
s hg38.chr3_KI270935v1_alt         97081 120 +    197351 --TGCTGGTGATCTTCGGGGATTTGGGATGCGGAGTTTCCAGGACGTCTCCGCACTTGAGGAGTGGAGAGGAGGGAAGGATCTGGA-GCCTACTCAGAG-CCTGCTCCTGATGTTGCCTCTTCG-
s ponAbe2.chr3                 199753737 120 + 202140232 --CTCTGGTGATCTTCGGGGATTTGGGATGCGGAGTTTCCAGGAGGTCTCCTCACTTGAGGAGTGGAGAGGAAGGAAGGATCTGGA-GCCTATTCAGAG-CCTGCTCCTGATGTTACCTCTTTG-
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120745723 120 + 123690457 --TGCCGGTGATCTTCGGGGATTTGGGATGCGGAGTTTCCAGGACGTCTCCGCACTTGAGGAGTGGAGAGGAAGGAAGGATCTGGA-GCCTATTCAGAG-CCTGCTCCTGATGTCGCCTCTTCG-
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            7015 119 +    111706 --TGCTGGTGATCTTT-GGGATTTGGGATGCGGAGTTTCCAGGACGTCTCCGCGCTTGAGGAGTGGAGGGGAAGGAAGGATCTGGA-GCCTATTCAGAG-CCTGCCCCTGATGTTGCCGCTTCG-
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     42189 119 + 192460366 --TGCTGGTGATCTTT-GGGATTTGGGATGCGGAGTTTCCAGGACGTCTCCGCGCTTGAGGAGTGGAGGGGAAGGAAGGATCTGGA-GCCTATTCAGAG-CCTGCCCCTGATGTTGCCGCTTCG-
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     38652 120 - 187378091 --TGCTGGTGATCTTTGGGGATTTGGGATGCGGAGTTTCCAGGGCGTCTCCGCGCTTGAGgagtggagaggaaggaaggatctGGA-GCCTATTTGGAG-CCTGCCCCTGATGTTGCCGCTTCG-
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   389799 120 -  91754291 --TGCTGGTGATCTTTGGGGATTTGGGATGCGGAGTTTCCAGGACGTCTCCGCGCTTGAGGAGTGGAGAGGAAGGAAGGATCTGGA-GCCTATTTGGAG-CCTGCCCCTGATGTTGCCGCTTCG-
i chlSab2.chr15                C 0 C 0
s mm10.chr16                    65414587  94 -  98207768 --CATGAGAGATTTTTGGAGATTTGGAGT----AGC------------------CTTAAGGAGTTGAGTTGAAAGAAGGAGCTAAAGGCCAATATTGCA-CCCTCTCC-----TTGGCATTTCA-
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29051178 123 +  31377067 CTCGGGTGTGAGCTTG-GGGATTCAGGGTTTGGACTTGCCAGGATGTCTACGTGCTCAGGGGGTGGGGAGGGAGGAAGGATCTGGG-GCCTATTCTGAGCCCCGTCTCTGATGCCCCCCTTTTCA
i canFam3.chr33                C 0 C 0
e calJac3.chr17                   905300   0 -  74750902 C
e panTro4.chr3_GL389630_random     58456 2322 +    103936 I

a score=229327.000000
s hg38.chr3_KI270935v1_alt         97201  91 +    197351 TGATCTTCTAGTGGTTCTTGGCGAAATCAGGAAAAGGc-------agatggagggttgtgtatggaaag------------------------------------------------------g-ggtggggatggaagtccggagaaatggt
s ponAbe2.chr3                 199753857  91 + 202140232 TAATCTTCTAGTGGTTCTTGGCGAAATCAGGAAAAggc-------agatggagggttgtgtatggaaag------------------------------------------------------a-tgtggggatggaagtctggagaaatggt
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120745843  89 + 123690457 TGATCTTCTAGTGGTTCTTGACGAAATCAGGAAAAGGC-------AGATGGAGggttgtgtatggaaag---------------------------------------------------------gtggagatggaagtccggagaaatggt
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            7134  91 +    111706 TGATCTTCTAGTGGTTCTTGGCGAAATCAGGAAAAGGC-------AGATGGAGggttgtgtatggaaag------------------------------------------------------a-ggtggagatggaagtctggagaaatggt
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     42308  91 + 192460366 TGATCTTCTAGTGGTTCTTGGCGAAATCAGGAAAAggc-------agatggagggttgtgtatggaaag------------------------------------------------------a-ggtggagatggaagtctggagaaacggt
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     38772  91 - 187378091 TGATCTTCTAGTGGTTCTTGGCGAAATCAGGAAAAGGC-------AGATGGAGGGTTGTGTATGGAAAG------------------------------------------------------A-GGTGGAGATGGAAGTCTGGAGAAATGGT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   389919  91 -  91754291 TGATCTTCTAGTGGTTCTTGGTGAAATCGGGAAAAGGc-------agatggagggttgtgtatggaaag------------------------------------------------------a-ggtggagatggaagtctggaaaaatggt
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   905300  89 -  74750902 TGGTCTTCCAGTGGTTCTTGGCTAAATCAGGAAAAggc-------agatgga-ggcagcgtgtggagag--------------------------------------------------------cgtggagatggaagtctggagacatggt
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65414681 150 -  98207768 TGACCTCCTGGTGGGTC--GGTAAAAAGCAGCTAAGATGTATATGAGATGTAgtgatgtgtaggtgacgttgtgatgtatgtgtgatgtcatgatatatatgtgatatcatgatgtgtgtgtga-tgtagtgatgtatgtgtgatgtaatgat
i mm10.chr16                   C 0 I 113
s canFam3.chr33                 29051301  91 +  31377067 TGATCTTCTAGTGATGCTTCCCAAAATCAGAAACAAGG-------ACAGTTAGGGAGGTGTATGGAAAC------------------------------------------------------ACTGTGGGGTTGGAAGTCTGGAGAAATGT-
i canFam3.chr33                C 0 C 0
e panTro4.chr3_GL389630_random     58456 2322 +    103936 I

a score=106392.000000
s hg38.chr3_KI270935v1_alt         97292 40 +    197351 ttgcggtctcgg-ctctgcctgtaacaacccgagtgacctt
s ponAbe2.chr3                 199753948 40 + 202140232 ttgtggtctcgg-ctctgcctctaacaacctgagtgacctt
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120745932 40 + 123690457 ttgcggtctcgg-ctctgcctctaacaacccaagtgacctt
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            7225 40 +    111706 tttcagtctcag-ctctgcctctaacaacccgagtgacctt
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     42399 40 + 192460366 tttcagtctcag-ctctgcctctaacaacccgagtgacctt
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     38863 40 - 187378091 TTTCGGTCTCAG-CTCTGCCTCTAACAACccgagtgacctt
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   390010 40 -  91754291 tttcagtctcag-ctctgcctctaacaacccgagtgacctt
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   905389 40 -  74750902 ttgccatctcag-ctctgcccttaacagcccgagcggccct
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65414944 36 -  98207768 TTGAGATCTTGG-CTGTGCTTT----AACCTGAGAGACCTT
i mm10.chr16                   I 113 C 0
s canFam3.chr33                 29051392 41 +  31377067 TTGAGATCCTGGTTTTTGCCCTTAAGTTGTTAAGTGACCTT
i canFam3.chr33                C 0 I 100
e panTro4.chr3_GL389630_random     58456 2322 +    103936 I

a score=576024.000000
s hg38.chr3_KI270935v1_alt         97332 241 +    197351 gggcaagtccctgtccc----tctctgg---------------------------------------------------------------------------------gcc------------tcagtttctccac-ctgtatttggagagggttggaatgggcactgaagtcctgtccagctctgaccttctgtgaAGTGCACTGTTGAGCAGCT------------------------------------------------------CTGGAAGCTTCTATTCCAGCCATAGCCACACAGAGGAGCAGCAGGCAGGCATCAGGCCCAAGCTGCTGCTCTCTG---ACAGGCTGGGACCCCATGAAAGTGGGGCCTGCTGGATGCATTTCCTG
s ponAbe2.chr3                 199753988 241 + 202140232 gggcaagtccccatccg----tctctgg---------------------------------------------------------------------------------gcc------------tcagttttcccac-ccatagttggagaaggttgggatgggcactgaagtcctgtccaactctgaccttctgtgaAGTGCACTGTTGAGCAGCT------------------------------------------------------CTGGAAGCTTCTATTCCAGCCATAGCCACACAGAGGGGCAGCAGGCGGGCATCAGGCCCAAGCTGCTGCTCTCTG---ACGGGCTGGGACCCCATGAAATTGGGGCCTGCTGGATGCATTTCCTG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120745972 241 + 123690457 gggcaagtccctgtccc----tctctgg---------------------------------------------------------------------------------gcc------------tcagtttccccac-ccatagttggagagggttggaatgggcactgaagtcctgtccagctctgaccttccatgaAGTGCACTGTTGAGCAGCT------------------------------------------------------CTGGAAGCTTCTATTCCAGCCATAGCCACACAGAGGAGCAGCAGGCAGGCATCAGGCCCAAGCTGCTGCTCTCTG---ATGGGCTCGGACCCCATGAAAGTGGGGCCTGCTGGATGCATTTCCTG
i nomLeu3.chr11                C 0 I 87807
s rheMac3.chrUn_JH291127            7265 241 +    111706 gggcaagtccctctccc----tctccgg---------------------------------------------------------------------------------gcc------------tcagtttccccac-ctgtagttggagagggttgggatgggcaccgaagtcctgtccagctctgaccttctatgaAGTTCACTGTTAAGCAGCT------------------------------------------------------CTGGAAGCTTCTATTCCAGCCGTAGCCACACAGAGGAGCAGCATGCAGGCATCAGGCCCAAGCTGCTGTTCTCTG---ACAGGCTGGGACCCCATGAAAGTGGGACACGCTGGATGCATTTCCTG
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     42439 241 + 192460366 gggcaagtccctctccc----tctccgg---------------------------------------------------------------------------------gcc------------tcagtttccccac-ctgtagttggagagggttgggatgggcaccgaagtcctgtccagctctgaccttctatgaAGTTCACTGTTAAGCAGCT------------------------------------------------------CTGGAAGCTTCTATTCCAGCCGTAGCCGCACAGAGGAGCAGCGTGCAGGCATCAGGCCCAAGCTGCTGTTCTCTG---ACAGGCTGGGACCCCATGAAAGTGGGACACGCTGGATGCATTCCCTG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     38903 241 - 187378091 gggcaagtccctctccc----tctctgg---------------------------------------------------------------------------------gcc------------tcagtttccccac-ctgcagTTGGAGAGGGTTGGGATGGGCACCGAAGTCCTGTCCAGCTCTGACCTTCTATGAAGTTCACTGTTGAGCAGCT------------------------------------------------------CTGGAAGCTTCTATTCCAGCCATAGCCACACAGAGGAGCAGCGTGCAGGCATCAGGCCCAAGCTGCTGTTCTCTG---ACGGGCTGGGACCCCGTGAAAGTGGGGCACGCTGGATGCGTTTCCTG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   390050 322 -  91754291 gggcaagtccctctccc----tctccgggcctcagtttccccacctgtaGTTTTTGgctctgtctctaacaacacaagtgaccttgggcaagtccctctccctctccgagcc------------tcagtttccccac-ctgtagttggagagggttgggatgggcaccgaagtcctgtccagctctgaccttctatgaAGTTCACTGTTGAGCAGCT------------------------------------------------------CTGGAAGCTTCTATTCCAGCCATAGCCGCACAGAGGAGCAGCATGCAGGCATCAGGCCCAAGCTGCTGCCCTCTG---ACGGGCTGGGACCCCATGAAAGTGGGGCCTGCTGGATGCATTTCCTG
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   905429 241 -  74750902 gaccaagtccctctccc----tctctgg---------------------------------------------------------------------------------gcc------------tcagtttctccac-ctgtagttggagaggcttgggatgggcactgaagtcctttccagctctgaacttctgtgaAGTTCACTGTTGAGCAGCT------------------------------------------------------CTGGAAACTTCTATTCCAGCCGTTGCGCCACAGAGGAGCAGCACGCAGGCATCAGGCCCAAGCTGCTACTCTCTG---ACAGGCTGGGACCCCATGAAAGTGGGGCCCTCTGGATGCATTTCCTA
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65414980 293 -  98207768 GGACCTGCCCCTCTCCTCTGATCTCCTG---------------------------------------------------------------------------------GCTGGTAAAAAGCAGCTAGTTTCTTCGCTTTGTGGT------------GGATGAGCGCC---ATCTTTTCCAGGTCTAA-CTTCTGTGAAGTTAACTATTGGGCGGCTACTGTGCTTCAGATGAGATCTGTAATGCTATTCAAAAGACTTGACCCTCACGCCTTGGAAGCCTCTA-GCCAGCAATGCCCACACAGAAGGAAAGAATGTGCAAAT-GCGTCCAAATCGCTGCCCTGCAAGCATGTGCAGGG----CACGCAAGTGGGGCTTGGTGGCCATATTTACTG
i mm10.chr16                   C 0 C 0
e canFam3.chr33                 29051433 100 +  31377067 I
e panTro4.chr3_GL389630_random     58456 2322 +    103936 I

a score=73739.000000
s hg38.chr3_KI270935v1_alt         97573 39 +    197351 GGATTTATGCCATAGATAGTGACTTAAAATAAATTAA------TA
s ponAbe2.chr3                 199754229 39 + 202140232 GGATTTATGCCATAGATAGTGACTTAAAATAAATTAA------TA
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chrUn_JH291127            7506 45 +    111706 GGATTTATGCCATAGATAGTGACCTAAAATAAATGAATACAGGTA
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     42680 45 + 192460366 GGATTTATGCCATAGATAGTGACCTAAAATAAATGAATACAGGTA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     39144 45 - 187378091 GGATTTATGCCATAGATAGTGacctaaaataaatgaatacaggta
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   390372 39 -  91754291 GGATTTATGCCATAGATAGTAACTTAAAATAAATGAA------TA
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   905670 39 -  74750902 GGATTTATGCCATAGATAGTGACTTAAAATAAATACA------TA
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65415273 39 -  98207768 TGTTTTACACCATAAAGAGTGATTTTAGACAAACCAA------CA
i mm10.chr16                   C 0 I 12
e canFam3.chr33                 29051433 100 +  31377067 I
e nomLeu3.chr11                120746213 87807 + 123690457 I
e panTro4.chr3_GL389630_random     58456 2322 +    103936 I

a score=295905.000000
s hg38.chr3_KI270935v1_alt         97612 189 +    197351 CAggcctggagcggtggcttatgcctgtaatcccagcactttgggaggcagaggccggcggatcacctgaggtcaggagttcgagaccaggctgaccaacatggtgaaaccccatctctactaaaaatatgaaaattagctgggcgcagtggtgggcgcctgtaatcccagctacttgggagactgagg
s ponAbe2.chr3                 199754268 189 + 202140232 CAggccgagtgcggtggcttatgcctgtaatcccagcactttgggaggcagaggtgggcggatcacctgaggttagaagtttgagaccagcctgaccaatatgatgaaaccccatctctactaaaaatatgaaaattagctgggcttggtggcgggcgcctgtaatcccagctacttgagaggctgagg
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chrUn_JH291127            7551 189 +    111706 CAggccgggagcggtggctcacgcctgtaacgccagcactttgggaggccgaggaggggaaatcacctgaggttaggagtttaagaccagcctgtccaacatagtgaaaccccgtctctactaaaaatttgaaaaggaaccgggcgtggtggcgcacgcctgtaataacagctaggccacaagctgagg
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     42725 189 + 192460366 CAggccgggagcggtggctcacgcctgtaacgccagcactttgggaggccgaggagggtaaatcacctgaggttaggagtttaagaccagcctggccaacatagtgaaaccccgtctctactaaaaatttgaaaatgaaccgggcgtggtggcgcacgcctgtaataccagctactcgggaggctgagg
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     39189 189 - 187378091 caggccgggagcggtggctcacgcctgtaacgccagcactttgggaggccgaggagggtaaatcacctgaggttaggagtttaagaccagcctggccaacatagtgaaaccccgtctctactaaaaatttgaaaatgaaccgggcgtggtggcgcacgcctgtaataccagctactcgggaggctgagg
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   390411 189 -  91754291 CAggccgggagcggtggctcacgcctgtaacgccagcactttgggaggtggaggagggtaaatcacctgaggttaggagtttaagaccagcctggccaacatagtgaaaccccgtctctactaaaaatttgaaaatgaacggggcgtggtggtgcacgcctgtaataccagctactcaggaggctgagg
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   905709 188 -  74750902 CGggctgggtgcggcggctcatgcctgtaatctcagcactttgggaggccgaggggggt-gaccacctaaggttaggagttcgagaccagcctggtcaacatggtgaaaccccgtctatattaaaaatacaaaaattagccaggtatagtagcacatgcctgtaattccagctactcaggaggctgagg
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65415312  12 -  98207768 I
e canFam3.chr33                 29051433 100 +  31377067 I
e nomLeu3.chr11                120746213 87807 + 123690457 I
e panTro4.chr3_GL389630_random     58456 2322 +    103936 I

a score=107658.000000
s hg38.chr3_KI270935v1_alt         97801 47 +    197351 caggagaatcacttgaacccgggaggtggaggttacagtgagctgag
s ponAbe2.chr3                 199754457 47 + 202140232 caggagaatcacttgaacccgggaggcggaggttgcagtgagctgag
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120834020 46 + 123690457 caggagaatcac-tgaacccgggaggtggaggttgcagtgagctgag
i nomLeu3.chr11                I 87807 C 0
s rheMac3.chrUn_JH291127            7740 47 +    111706 caggagaatcgcttgagcccgggaggtggaggttgaagtgagccgag
i rheMac3.chrUn_JH291127       C 0 I 28
s macFas5.chr2                     42914 47 + 192460366 caggagaatcgcttgaacccgggaggtggaggttgaagtgagccgag
i macFas5.chr2                 C 0 I 28
s papAnu2.chr2                     39378 47 - 187378091 caggagaatcacttgaacccaggaggtggaggttgaagtgagccgag
i papAnu2.chr2                 C 0 I 28
s chlSab2.chr15                   390600 47 -  91754291 caggagaatcacttgaacccgggaggtggaggttgaagtgagccgag
i chlSab2.chr15                C 0 I 67
s calJac3.chr17                   905897 47 -  74750902 caggcgaactgcttgaacccaggaggtggaggttacagtgagctgag
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65415312 12 -  98207768 I
e canFam3.chr33                 29051433 100 +  31377067 I
e panTro4.chr3_GL389630_random     58456 2322 +    103936 I

a score=25761.000000
s hg38.chr3_KI270935v1_alt         97848 39 +    197351 ----------------------------acg-gagtgaaactccgtctcaaaaaaaaaaggtaag-ata
s ponAbe2.chr3                 199754504 37 + 202140232 ----------------------------atg-gagtgaaactccgtctcaaaaaaaaa--gtaag-ata
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120834066 38 + 123690457 ----------------------------aca-gagtgaaactccatctcaaaaaaaaaa-gtaag-ata
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            7815 35 +    111706 ----------------------------atgagagtgaaactccatctcaaaaacaaa--caaac----
i rheMac3.chrUn_JH291127       I 28 C 0
s macFas5.chr2                     42989 35 + 192460366 ----------------------------atgagagtgaaactccatctcaaaaacaaa--caaac----
i macFas5.chr2                 I 28 C 0
s papAnu2.chr2                     39453 35 - 187378091 ----------------------------acgagagtgaaactccatctcaaaaataaa--caaac----
i papAnu2.chr2                 I 28 C 0
s calJac3.chr17                   905944 67 -  74750902 atcacaccactgcactctggcctgggtgacaagagtgaaattccatatcaaaataatc--ataataata
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65415312 12 -  98207768 I
e canFam3.chr33                 29051433 100 +  31377067 I
e chlSab2.chr15                   390647 67 -  91754291 I
e panTro4.chr3_GL389630_random     58456 2322 +    103936 I

a score=15434.000000
s hg38.chr3_KI270935v1_alt         97887  9 +    197351 aaataagc----a
s ponAbe2.chr3                 199754541 13 + 202140232 aaataaacaaaTA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120834104 13 + 123690457 aaataaacaaaTA
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            7850  9 +    111706 ----aaacaaata
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     43024  9 + 192460366 ----aaacaaata
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     39488  9 - 187378091 ----aaacaaata
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   390714  9 -  91754291 ----aaacaaata
i chlSab2.chr15                I 67 C 0
s calJac3.chr17                   906011  9 -  74750902 ----aaacaaata
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65415312 12 -  98207768 I
e canFam3.chr33                 29051433 100 +  31377067 I
e panTro4.chr3_GL389630_random     58456 2322 +    103936 I

a score=32785.000000
s hg38.chr3_KI270935v1_alt         97896 16 +    197351 aaTACAGCGAAGGCTT
s ponAbe2.chr3                 199754554 16 + 202140232 AATACGGCGAAGGCTT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120834117 16 + 123690457 AATACGGCAAAGTCTT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            7859 16 +    111706 aaTACAGCAAAGTCTT
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     43033 16 + 192460366 aaTACAGCAAAGTCTT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     39497 16 - 187378091 aatacagcaAAGGCTT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   390723 16 -  91754291 aaTACAGCAAAGGGTT
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   906020 16 -  74750902 aaCGTGGTGAAGGTAT
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29051533 16 +  31377067 AATGGGGTGAAGGATT
i canFam3.chr33                I 100 C 0
e mm10.chr16                    65415312 12 -  98207768 I
e panTro4.chr3_GL389630_random     58456 2322 +    103936 I

a score=594103.000000
s hg38.chr3_KI270935v1_alt         97912 206 +    197351 GGGAGTTTAAAGCTACATCTCTGAGGC----AACAGGGACTTCTCAGGGGAGAAGTTCATTGTCAGAGGCTGCTTGGTCAGTCCAGCTTCTGGTCAGCCTGTAGCCTCCACCTC--CACTTCCTGTCACTCTGCCCTTGGGCCTCATCTCTGTG----TATCCGCAGCTTGTTACCACCTTTCTGGGGGAGGTGGGAATACAAATATTAATCACAA
s ponAbe2.chr3                 199754570 208 + 202140232 GGGAGTTTAAAGCTACATCTCGGAGGC----AACAGGGACTTCTCAGGGGAGAAGTTCATTGTCAGAGGCTGCTTGGTCAGTCCAGCTTCTGGTCAGCCTGTAGCCTCCACCTCCACACTTCCTGTCACTCTGCCCTTGGGCCTCATCTCTGTG----TATCCACAGCTTGTTACCACCTTTCTGGGGGAGGTGGGAATACAAATATTAATCACAA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120834133 206 + 123690457 GGGAGTTTAAAGCTACATCTTTGAGGC----AACAGGGACTTCAAAGGGGAGAAGTTCATTGTCAGAGGCTGCTTGGTCAGTCCAGCTTCTGGTCAGCCTGTAGCCTCCACCTC--CACTTCCTGTCACTCTGCACTTGGGCCTCATCTCTGTG----TATCCGCAGCTTGCTCCCACCTTTCTGGGGGAGGTGGGAATACAAATATTAATCACAA
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            7875 209 +    111706 GGGAGTTTAAAGCTACATCTCTGAGGCAACAAACAGGGACTTCTCAGGGGAG-AGTTCATTGTCAGAGGCTGCTTGGTCAGTCCAGCTTCTGGCCAGCCTGTAGCCTCCACCTC--CACTTGCTGTCACTCTGCCCTTGGGCCTCATCTCTGTG----TATCCACAGCTTGCTCCCACCTTTCTGGGGGAGGTGGGAATACAAACATTAATCACAG
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     43049 209 + 192460366 GGGAGTTTAAAGCTACATCTCTGAGGCAACAAACAGGGACTTCTCAGGGGAG-AGTTCATTGTCAGAGGCTGCTTGGTCAGTCCAGCTTCTGGCCAGCCTGTAGCCTCCACCTC--CACTTGCTGTCACTCTGCCCTTGGGCCTCATCTCTGTG----TATTCACAGCTTGCTCCCACCTTTCTGGGGGAGGTGGGAATACAAACATTAATCACAG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     39513 209 - 187378091 GGGAGTTTAAAGCTACATCTCTGAGGCAACAAACAGGGACTTCTCAGGGGAG-AGTTCATTGTCAGAGGCTGCTTGGTCAGTCCAGCTTCTGGCCAgcctgtagcctccacctc--cactTGCTGTCACTCTGCCCTTGGGCCTCATCCCTGTG----TATCCACAGCTTGCTCCCACCTTTCTGGGGGAGGTGGGAATACAAACATTAATCACAG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   390739 209 -  91754291 GGGAGTTTAAAGCTACATCCCTGAGGCAACAAACAGGGACTTCTCAGGGGAG-AGTCCAATGTCAGAGGCTGCTTGGTCAGTCCAGCTTCTGGCCAGCCTGTAGCCTCCACCTC--CACTTCCTGTCGCTCTCCCCTTGGGCCTCATCTCTGTG----TGTCCACAGCTTGCTCCCACCTTTCTGGGGGAGGTGGGAATACAAACATTAATCACAG
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   906036 199 -  74750902 GGGAGTTGAAAGCTCTATCTCTCAGGC----AACGGGGACTCCTCAGGGGAG-GACTCGTTGCCAGAGGCTGCCTGGTCAGTCCAGCTTC----CGGCCTGCAGCCTCCACCTG--CACCTCCCGTCACTCTGTCCTTGGGCCTCATCTCTGTG------TCCACAGCTTGTTCCCACTTTTCTGGAGGAGGTGGGAATACAAATGTTAATCACAA
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65415324 196 -  98207768 GGGAGTTTAAACCTTCATTTCTGAAAC----AACAGAAGCGTCTCAGAGA---GGCGCATTGTCAGCAACTCTCCCGTAAGGGCAGCTTGTGGGCAG-CTGGAGTGTCTGCCTC--TACTGC---TCATCTTCTCCTTATGGTGCATTCCTGAG----TATCTTTGCCTTGTT-CTACTTTTTTGGGCAAG--GGGAATAAAAATGTTAATCATga
i mm10.chr16                   I 12 I 545
s canFam3.chr33                 29051549 202 +  31377067 GGGGGTTTAAAGCTACGTGTCTGAGAC----AACAGGTACTTCTCAGGGAAGAAGCCCCTTGTCAGAGGCTGCGT-GTCAGCCCAGCTTCTGGCCAGCCTGGAACCTCCACCTC--CACTTC---TGACACTGTCCTTGGGCCTCGTCCCTGTGGTATTATCCTCAGCTGGCCCTGGTCTGT---GGAGACGT-GAAATAAAAATATCCACGACAG
i canFam3.chr33                C 0 C 0
e panTro4.chr3_GL389630_random     58456 2322 +    103936 I

a score=32212.000000
s hg38.chr3_KI270935v1_alt         98118 17 +    197351 CCACTCAATACATAAAG
s ponAbe2.chr3                 199754778 17 + 202140232 CCACTCAATACATAAAG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120834339 17 + 123690457 CCACTCAGTACAGAAAG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            8084 17 +    111706 CCACTCAATAAATAAGG
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     43258 17 + 192460366 CCACTCAATAAATAAGG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     39722 17 - 187378091 CCACTCAATAAATAAGG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   390948 17 -  91754291 TCACTCAATAAATAAAG
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   906235 17 -  74750902 CCACTCAATAAATAAAG
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29051751  5 +  31377067 CCGCC------------
i canFam3.chr33                C 0 C 0
e mm10.chr16                    65415520 545 -  98207768 I
e panTro4.chr3_GL389630_random     58456 2322 +    103936 I

a score=163950.000000
s hg38.chr3_KI270935v1_alt         98135 66 +    197351 ATATTATTGAATATCTTTCATGTTATAGGCAGGGGTGATATAAACATGTTTCACACCCAGTAAGCA
s ponAbe2.chr3                 199754795 66 + 202140232 ATATTATTCAATATCTTTTGTATTGTAGGCAGGGGTTTTATAAACATGTTTCACACCCAGTAAGCA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120834356 66 + 123690457 ATATTATTGAATATCTTTTGTATTGTAGGTAGGGGTGATATAAACACATTTCACAGCCAGTAAGCA
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            8101 66 +    111706 ATATTATTGAATATCTTTTGTATTGTAGAAAGGGGTGATATAAACATGTTTCACACCCAGTAAGCG
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     43275 66 + 192460366 ATATTATTGAATATCTTTTGTATTGTAGAAAGGGGTGATATAAACATGTTTCACACCCAGTAAGCG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     39739 66 - 187378091 ATATTATTGAATATCTTTTGTATTGTAGAAAGGGGTGATATAAACATGTTTCACACCCAGTAAGCG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   390965 66 -  91754291 ATATTATTGAATACCTTTTGTATTGTAGGCAGGGGTGATATAAACATGTTTCACATCCAGTAAGCG
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   906252 64 -  74750902 ATATTGTTGAGTATCTTTTGTGTTGTAGGCA-GGGTGACATAAAAACGTTTCACACCCA-TGAGCG
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65416065 66 -  98207768 ATGTTATTGTATATCTTTTTTATTCTAGGTAAGATTAATATAAAAACACTTTGCAGTCAGTAGGCA
i mm10.chr16                   I 545 I 1400
s canFam3.chr33                 29051756 52 +  31377067 ---TTACCGAACATCACTCATGTGCCAGGGAGAAGTGAGAGAGAAA-------CCCTCAGGA----
i canFam3.chr33                C 0 C 0
e panTro4.chr3_GL389630_random     58456 2322 +    103936 I

a score=82892.000000
s hg38.chr3_KI270935v1_alt         98201 40 +    197351 CTGGCCCCAGCAGAACGTTCTCTCCGgtgccaggcagtgt
s ponAbe2.chr3                 199754861 40 + 202140232 TCGGCCCCAGGTGAACATTCTCTCCAgtgccaggcagtgt
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120834422 40 + 123690457 TTGGCCCCAGCTGAACATTCTCTCTGATGCCAGGCAGTGT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            8167 40 +    111706 TTGGCCCCCGCTGAACGTTCTCTCTGATGCCAGGCAGtgt
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     43341 40 + 192460366 TTGGCCCCCGCTGAACGTTCTCTCTGATGCCAGGCAGTGT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     39805 39 - 187378091 TTGGCCCCCGCTGAACGTTCTCTCTGATGCCAGGCAGTG-
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   391031 40 -  91754291 TTGGCCCCCGCTGAACGTTCTCTCTGATGCCAGGCAGtgt
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   906316 28 -  74750902 TTGGCACCAGCTGAAGGTTCTCTCTGAT------------
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29051808 34 +  31377067 ------CCGGCTGTGCGTGCTTGCTGACGTCAGGCAGTAA
i canFam3.chr33                C 0 C 0
e mm10.chr16                    65416131 1400 -  98207768 I
e panTro4.chr3_GL389630_random     58456 2322 +    103936 I

a score=10187.000000
s hg38.chr3_KI270935v1_alt         98241 24 +    197351 gccaccagctttgcatatgttatc
s ponAbe2.chr3                 199754901 24 + 202140232 gccaccagctttgcatatgttatc
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120834462 24 + 123690457 GCCACCAGCTTTGCATATGttacc
i nomLeu3.chr11                C 0 T 2473
s macFas5.chr2                     43381 14 + 192460366 GATGCCAG----GCA-Gtg-----
i macFas5.chr2                 C 0 C 0
s calJac3.chr17                   906344 24 -  74750902 GCCGCCAGCTCTGCATATGCTCTC
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29051842 24 +  31377067 CATGCGAGCTTCGCAGGGGTTACC
i canFam3.chr33                C 0 I 1536
e rheMac3.chrUn_JH291127            8207  0 +    111706 C
e mm10.chr16                    65416131 1400 -  98207768 I
e chlSab2.chr15                   391071  0 -  91754291 C
e papAnu2.chr2                     39844  0 - 187378091 C
e panTro4.chr3_GL389630_random     58456 2322 +    103936 I

a score=6066.000000
s hg38.chr3_KI270935v1_alt         98265 27 +    197351 tgatGCCAGGCAGTGTGCCACCGGCTT
s macFas5.chr2                     43395 25 + 192460366 tgatgccaggca--gtgccaccagctt
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     39844 25 - 187378091 TGATGCCAGGCA--GTGCCACCAGCTT
i papAnu2.chr2                 C 0 C 0
e rheMac3.chrUn_JH291127            8207  0 +    111706 C
e mm10.chr16                    65416131 1400 -  98207768 I
e canFam3.chr33                 29051866 1536 +  31377067 I
e calJac3.chr17                   906368  0 -  74750902 C
e chlSab2.chr15                   391071  0 -  91754291 C
e ponAbe2.chr3                 199754925  0 + 202140232 C
e nomLeu3.chr11                120834486 2473 + 123690457 T
e panTro4.chr3_GL389630_random     58456 2322 +    103936 I

a score=3671.000000
s hg38.chr3_KI270935v1_alt         98292 13 +    197351 TGTATATGTTATC
s nomLeu3.chr11                120832013 13 + 123690457 TGAACATTCTCTC
i nomLeu3.chr11                T 2473 C 0
s macFas5.chr2                     43420 13 + 192460366 cgtgtatgttatc
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     39869 13 - 187378091 CGTGTATGTTATC
i papAnu2.chr2                 C 0 C 0
e rheMac3.chrUn_JH291127            8207  0 +    111706 C
e mm10.chr16                    65416131 1400 -  98207768 I
e canFam3.chr33                 29051866 1536 +  31377067 I
e calJac3.chr17                   906368  0 -  74750902 C
e chlSab2.chr15                   391071  0 -  91754291 C
e ponAbe2.chr3                 199754925  0 + 202140232 C
e panTro4.chr3_GL389630_random     58456 2322 +    103936 I

a score=7225.000000
s hg38.chr3_KI270935v1_alt         98305 81 +    197351 TGATGCCAGGCAGTGTGCCACCGGCTTTGCATATGTTATCTGATGCCAGGCAGTGTACCACCAGCTTTGCATATGTTATCT
s nomLeu3.chr11                120832026 81 + 123690457 TGATGCCAGGCAGTGTGCCACCAGCTTTGCATATGttacctgatgccaggcagtgtgccatcagctttgcatatgttatct
i nomLeu3.chr11                C 0 T 40
e rheMac3.chrUn_JH291127            8207  0 +    111706 C
e mm10.chr16                    65416131 1400 -  98207768 I
e canFam3.chr33                 29051866 1536 +  31377067 I
e calJac3.chr17                   906368  0 -  74750902 C
e chlSab2.chr15                   391071  0 -  91754291 C
e macFas5.chr2                     43433  0 + 192460366 C
e papAnu2.chr2                     39882  0 - 187378091 C
e ponAbe2.chr3                 199754925  0 + 202140232 C
e panTro4.chr3_GL389630_random     58456 2322 +    103936 I

a score=3436.000000
s hg38.chr3_KI270935v1_alt         98386 40 +    197351 GATGCCAGGCAGTGTACCACCGGCTTTGCATATGTTATCT
s nomLeu3.chr11                120832067 40 + 123690457 gatgccaggcagtgtgccatcagctttgcatatgttatct
i nomLeu3.chr11                T 40 T 40
e rheMac3.chrUn_JH291127            8207  0 +    111706 C
e mm10.chr16                    65416131 1400 -  98207768 I
e canFam3.chr33                 29051866 1536 +  31377067 I
e calJac3.chr17                   906368  0 -  74750902 C
e chlSab2.chr15                   391071  0 -  91754291 C
e macFas5.chr2                     43433  0 + 192460366 C
e papAnu2.chr2                     39882  0 - 187378091 C
e ponAbe2.chr3                 199754925  0 + 202140232 C
e panTro4.chr3_GL389630_random     58456 2322 +    103936 I

a score=3407.000000
s hg38.chr3_KI270935v1_alt         98426 37 +    197351 GATGCCAGGCAGTGTGCCACCAGCTTTGCATATGTTA
s nomLeu3.chr11                120832067 37 + 123690457 gatgccaggcagtgtgccatcagctttgcatatgtta
i nomLeu3.chr11                T 40 I 2382
e rheMac3.chrUn_JH291127            8207  0 +    111706 C
e mm10.chr16                    65416131 1400 -  98207768 I
e canFam3.chr33                 29051866 1536 +  31377067 I
e calJac3.chr17                   906368  0 -  74750902 C
e chlSab2.chr15                   391071  0 -  91754291 C
e macFas5.chr2                     43433  0 + 192460366 C
e papAnu2.chr2                     39882  0 - 187378091 C
e ponAbe2.chr3                 199754925  0 + 202140232 C
e panTro4.chr3_GL389630_random     58456 2322 +    103936 I

a score=91.000000
s hg38.chr3_KI270935v1_alt         98463 1 +    197351 T
s nomLeu3.chr11                120834486 1 + 123690457 t
i nomLeu3.chr11                I 2382 C 0
e rheMac3.chrUn_JH291127            8207 0 +    111706 C
e mm10.chr16                    65416131 1400 -  98207768 I
e canFam3.chr33                 29051866 1536 +  31377067 I
e calJac3.chr17                   906368 0 -  74750902 C
e chlSab2.chr15                   391071 0 -  91754291 C
e macFas5.chr2                     43433 0 + 192460366 C
e papAnu2.chr2                     39882 0 - 187378091 C
e ponAbe2.chr3                 199754925 0 + 202140232 C
e panTro4.chr3_GL389630_random     58456 2322 +    103936 I

a score=17695.000000
s hg38.chr3_KI270935v1_alt         98464 39 +    197351 GAtgccaggcagtgtgccaccagctttgcatatgttatc
s nomLeu3.chr11                120834487 39 + 123690457 gatgccaggcagtgtgccatcagctttgcatatgttatc
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            8207 37 +    111706 gatgccaggca--gtgccaccagcttcgtgtatgttatc
i rheMac3.chrUn_JH291127       C 0 C 0
s chlSab2.chr15                   391071 37 -  91754291 gatgccaggca--gtgccaccagcttcgtgtatgttatc
i chlSab2.chr15                C 0 C 0
e mm10.chr16                    65416131 1400 -  98207768 I
e canFam3.chr33                 29051866 1536 +  31377067 I
e calJac3.chr17                   906368  0 -  74750902 C
e macFas5.chr2                     43433  0 + 192460366 C
e papAnu2.chr2                     39882  0 - 187378091 C
e ponAbe2.chr3                 199754925  0 + 202140232 C
e panTro4.chr3_GL389630_random     58456 2322 +    103936 I

a score=215932.000000
s hg38.chr3_KI270935v1_alt         98503 92 +    197351 tcctctatttaaccttcaaaacagccttaggaggtgggtaacacgaccccatctgacagGGTTAAAGATGGTAGCTAAACTGCTCTGGAAAG
s ponAbe2.chr3                 199754925 92 + 202140232 tcctctatgtaaccttcagaacagccttaggaggtgggtaacatgaccccatctgacagGGTTAAAGATGGTAGCTAAACTGCCCTGGAAAG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120834526 92 + 123690457 tcctctatttaaccttcaaaacagccttatgaggtgggtaacacgaccccatctgacagGGTTAAAGATGGTAGCTAAACTGCCCTGGAAAG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            8244 92 +    111706 tcctctatttaaccttcaaaacagccttaggaggtgggtaacacgaccgcatctgatagGGTTAAAGATGGTAGCTAAACTGCCCTGGAAAG
i rheMac3.chrUn_JH291127       C 0 I 729
s macFas5.chr2                     43433 92 + 192460366 tcctctatttaaccttcaaaacagccttaggaggtgggtaacacgaccgcatctgacagGGTTAAAGATGGTAGCTAAACTGCCCTGGAAAG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     39882 92 - 187378091 TCCTCTATTTAGCCTTCAAAACAGCCTTAGGAGGTGGGTAACACGACCGCATCTGACAGGGTTAAAGATGGTAGCTAAACTGCCCTGGAAAG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   391108 92 -  91754291 tcctctatttaaccttcaaaacagccttagaaggtgggtaacatgaccccatctgacagGGTTAAAGATGGTAGCTAAACTGCCCTGGAAAG
i chlSab2.chr15                C 0 I 722
s calJac3.chr17                   906368 90 -  74750902 TCCTCTACTTAACCTTCC-AGCAGCCTTGTGAGGT-GGTAACACGACCCCAGCTGACAGGGTTAGAGACGGCAGCTAAACTGCTCTGGAAAG
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65416131 1400 -  98207768 I
e canFam3.chr33                 29051866 1536 +  31377067 I
e panTro4.chr3_GL389630_random     58456 2322 +    103936 I

a score=877.000000
s hg38.chr3_KI270935v1_alt         98595 4 +    197351 tgaa-
s ponAbe2.chr3                 199755017 4 + 202140232 tgaa-
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120834618 4 + 123690457 tgaa-
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     43525 3 + 192460366 -AAA-
i macFas5.chr2                 C 0 I 738
s papAnu2.chr2                     39974 3 - 187378091 -AAA-
i papAnu2.chr2                 C 0 I 761
s calJac3.chr17                   906458 4 -  74750902 -AAAA
i calJac3.chr17                C 0 I 1955
e rheMac3.chrUn_JH291127            8336 729 +    111706 I
e mm10.chr16                    65416131 1400 -  98207768 I
e canFam3.chr33                 29051866 1536 +  31377067 I
e chlSab2.chr15                   391200 722 -  91754291 I
e panTro4.chr3_GL389630_random     58456 2322 +    103936 I

a score=302497.000000
s hg38.chr3_KI270935v1_alt         98599 1216 +    197351 ggggtggcctgcccctccacacctgtgggtatttctagtcgggtgggatgagagactgagaaaagaaataaggcacagagacaaagtatagagaaacaacagtgggcccaggggaccgtcgctcagcataccaaggacctgcaccggcaccagtctctgagttttctcagtttttattgattattattttcattattttagcaaaaaggaatgtagtaggagagcagggtgataataaggagaaggtcagcaagaaacatgtgagcaaaagaatctgtgtcataattaagttcaagggaagatactatgcctggatgtgcacgtaggccagatttatgtttctctccacccaaacatctcagcagagtaaagaataataaagcagcattgctgcaaacatgtctcacctcccgccacagggtggtttttctcctgtctcagaattgaacaaatgtacaatcgggttttatactgagacattcagttcccaggggcaggcaggagacagtggccttcctctatctcaactgcaagaggagatcctcttttactaatccacctcagcacagaccctttacgggtgtcagcctgggggacggtcaggtctttgtcatcccacaaggccatatttcagactat-acatggggagaaagcttggacaataacctgctttcaagggcagaggtccctgcggctttccacagtgcattgtgcccctggtttattgagactagagaatggcgatgacttctaccaagtatactgcttgtaaacattttgttaacaaggcacgtcctgcacagccctagatcccttaaaccttgattttatacaacacatgtttttatgagctcaaggttggggcaaagttacaaattaacaacatctcagcaaagcttgtttaaagtacaggtctttttcaaaatggagtctc--atgtctttcctttctacagagacacagtgacagtctgatcgctccttcttttccctGGAAAGAAAAATACtttattatttgttgattagataagacattcatatgatttgaaatggaaaggtacgaaaaggttcaccataaaatgcctttctcccctggctgtgcccccacccag---ttctctccacacatgtaacccgtgagattgtctcttgtgtgtaattttctgcacatgaaatgtacatacggaagcaaatatatgtgactatttCATCCTCCtctttt
s ponAbe2.chr3                 199755021 1215 + 202140232 ggggtggcctgcccctccacacctgtgtgtatttctagtcgggtgggatgagagacttagaaaagaaatgagacacagagacaaagtatagagaaacaacagtgggcccagaggaccggcactcagcacaacaaggacctgcaccggcaccggtctctgagatttctcagtttttattgattattattttcattattttagcaaaaaggaatgcagtaggagagcagggtgataataaggagaaggtcagcaaaaaacatgtgagcaaaagaatctacatcataattaagttcaagggaaggtactatgcctggacgtgcacgtaagccagatttatgtttctctccaccggaacatctcagcagagtaaagaataacaaggcagcattgctgcaaacatgtctcacctcctgccatagggcggtttttcttctatctcagaattgaacaaatgtacaattgggttttataccaagacattcagttcccaggggcaggcaggagacagcggccctcctctatctcagctgcaagaggctttcctcttttactaatccacctcagcacagaccctttatgggtgtcgggctgggggatggtcaggtctttctcatcccacgaggccatgtttcagactatcacatggggagaaaccttgcacaataccccgctttcaagggcagaggtccctgcggctttctgcagtgcattgtgcccctggtttattgagactagagaatggcgataacttttaccaaggatactgcttgtaaacattttgttaacaaggcacgtcctgcacagccctaaatcccttaaaccttgattttatacaacacatgtttttgtgagctcaaggttggggcaaagttacaaattaacaacatctcagcaaagcttgtttaaagtacaggtctttttcaaaatggagtctcttatgtctttcctttctacgtagacacagtaacagtctgatcgctccttcttttccctGGAAAGAAAAATACTTTATTATTTGTTGATTAGATAAGACATTCATATGATCTGAAATGGAAAGGCACAAAAAGGTTCGCCATAAAATATCTTTCTCCCCTGGCTGTGCCCCCACCCAG---TTCTCTCCACACATGTAACCCGTGAGATTGTCTCTTGTGTGCAATTTTCTGCAAATGAAATGTACATACGGAAGCAAATATATGTGTCTAtttcatcttcctc----
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120834622 1212 + 123690457 ggggtggcctgcccctccacagctgtgggtatttctagttgggt-ggacaagagac--agaaaagaaataagacacagagacaaagtatagagaaacaacagtgggcccaggggaccggcgctcagcacaccaaggacctgcaccagcaccggcctctgagttccctcagtttttattgattattattttcattatttcagcaaaaaggaatgtagtaggagagcagggtgataataagg---aggtcagcaaaaaacatgtgagcaaaagaatctatgtcataattaagttcaagggaaggtactatgcctggacgtgcacgtaggccagatttatgtttctctccacccaaacatctcagtggagtaaagaataacaaggcagcattgctgccaacatgtctcgcctcccaccacagggcggttttt---ctatctcagaattgagcaaatatgcgatcgggttttataccgagacattcagttcccaggggcaggcaggagacagtggccttcctctctctcaactgcaagaggctttcctcttttactaatccacctcagcacagaccctttacgggtgtcaggctgggggacggtcaggtctttctcatcccacgaggccatatttcagactatcacatggggagaaacctgggacaatatcccgctttccagggcagaggtccctgcggctttccacagtgcatggtgcccctggtttattgagactagagaatggagatgacttttaccaagtatactgcctgtaaacattttgttaacaaggcacgtcctgcacagccctagatcccttaaaccttgattttatacaacacatgtttctgtgagctcgaggttggggcaaagctacaaattaacaacatctcagcaaagcttgtttaaagtacaggtctttttcaaaatggagtctctcacgtctttcctttcgacatagacacagtgacagtctgatcgctccttcttttccctGGAAAGAAAAATAC-TTAttatttgttgattagataagacactcatatgattggaaatggaaaggtacaaaaaggtacaccattaaatgtctttctgccctggccgtgcccccacccggcacttctcttcacacatgtaacccgtggggttgcctcttgtgcgtcattttctgcatatgaaatgtacatacggaagcaaatatatgtgtctatttcatcctcctctttt
i nomLeu3.chr11                C 0 C 0
e rheMac3.chrUn_JH291127            8336  729 +    111706 I
e mm10.chr16                    65416131 1400 -  98207768 I
e canFam3.chr33                 29051866 1536 +  31377067 I
e calJac3.chr17                   906462 1955 -  74750902 I
e chlSab2.chr15                   391200  722 -  91754291 I
e macFas5.chr2                     43528  738 + 192460366 I
e papAnu2.chr2                     39977  761 - 187378091 I
e panTro4.chr3_GL389630_random     58456 2322 +    103936 I

a score=819.000000
s hg38.chr3_KI270935v1_alt         99815 3 +    197351 ttt
s nomLeu3.chr11                120835834 3 + 123690457 ttt
i nomLeu3.chr11                C 0 C 0
s chlSab2.chr15                   391922 3 -  91754291 ttt
i chlSab2.chr15                I 722 C 0
e rheMac3.chrUn_JH291127            8336 729 +    111706 I
e mm10.chr16                    65416131 1400 -  98207768 I
e canFam3.chr33                 29051866 1536 +  31377067 I
e calJac3.chr17                   906462 1955 -  74750902 I
e macFas5.chr2                     43528 738 + 192460366 I
e papAnu2.chr2                     39977 761 - 187378091 I
e ponAbe2.chr3                 199756236 0 + 202140232 C
e panTro4.chr3_GL389630_random     58456 2322 +    103936 I

a score=1092.000000
s hg38.chr3_KI270935v1_alt         99818 2 +    197351 tt
s nomLeu3.chr11                120835837 2 + 123690457 tt
i nomLeu3.chr11                C 0 C 0
s papAnu2.chr2                     40738 2 - 187378091 tt
i papAnu2.chr2                 I 761 C 0
s chlSab2.chr15                   391925 2 -  91754291 tt
i chlSab2.chr15                C 0 C 0
e rheMac3.chrUn_JH291127            8336 729 +    111706 I
e mm10.chr16                    65416131 1400 -  98207768 I
e canFam3.chr33                 29051866 1536 +  31377067 I
e calJac3.chr17                   906462 1955 -  74750902 I
e macFas5.chr2                     43528 738 + 192460366 I
e ponAbe2.chr3                 199756236 0 + 202140232 C
e panTro4.chr3_GL389630_random     58456 2322 +    103936 I

a score=66423.000000
s hg38.chr3_KI270935v1_alt         99820 71 +    197351 tttttt--------------------ttttttgagac--agtttcgctcttgttgcccaggttggagtgtagtgctgcgatctcagatcacca
s ponAbe2.chr3                 199756236 73 + 202140232 tttttt--------------------ttttttgagacagagtttcgctcttgttgcccacgttggagtgtagtgctgcgatctcagatcacca
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120835839 93 + 123690457 ttttttttttttggtttttttttttgttttttgagaaagagtttcgctcttgttgcccaggctggagtgtaatgctgcgatctcagctcacca
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     44266 72 + 192460366 tttttt--------------------ttttttgagatggagtctcactc-tgtcacccagtctggagtgcagtggcgtgatctcgactcactg
i macFas5.chr2                 I 738 C 0
s papAnu2.chr2                     40740 72 - 187378091 tttttt--------------------ttttttgagatggagtctcactc-tgtcacccagtccggagtgcagtggcgtgacctcgactcactg
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   391927 72 -  91754291 tttttt--------------------ttttttgagatggagtctcactc-tgtcacccaggctggagtgcagtggcgtgatctcgactcactg
i chlSab2.chr15                C 0 C 0
e rheMac3.chrUn_JH291127            8336 729 +    111706 I
e mm10.chr16                    65416131 1400 -  98207768 I
e canFam3.chr33                 29051866 1536 +  31377067 I
e calJac3.chr17                   906462 1955 -  74750902 I
e panTro4.chr3_GL389630_random     58456 2322 +    103936 I

a score=27019.000000
s hg38.chr3_KI270935v1_alt         99891 17 +    197351 caacctccgcctcccag
s ponAbe2.chr3                 199756309 17 + 202140232 caacctccgcctcctag
i ponAbe2.chr3                 C 0 I 433
s nomLeu3.chr11                120835932 17 + 123690457 caacctctgcctcccag
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            9065 17 +    111706 caacctccacctccagg
i rheMac3.chrUn_JH291127       I 729 C 0
s macFas5.chr2                     44338 17 + 192460366 caacctccacctccagg
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     40812 17 - 187378091 cagcctccacctcctgg
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   391999 17 -  91754291 caacctccacctccagg
i chlSab2.chr15                C 0 C 0
e mm10.chr16                    65416131 1400 -  98207768 I
e canFam3.chr33                 29051866 1536 +  31377067 I
e calJac3.chr17                   906462 1955 -  74750902 I
e panTro4.chr3_GL389630_random     58456 2322 +    103936 I

a score=187435.000000
s hg38.chr3_KI270935v1_alt         99908 121 +    197351 gttcaggcgattctcctgcctcagcctcctgagtagctgggattacaggcacgcaccaccatgcccggctcatttt-gtgtttttagtaaagacgggatttc-tccatgttggtcaggctggt
s ponAbe2.chr3                 199756759 122 + 202140232 gttcaagcaactctcctgcctcagcctcctgagtagctgggatgacaggcgtgagctaccacgcctggctgatttttgtatttttagtagagatggggtttc-acaatgctggccaggctggt
i ponAbe2.chr3                 I 433 C 0
s nomLeu3.chr11                120835949 121 + 123690457 gttcaggcgattctcctgcctccgcctcctgagtagctgggattacaggcatgcaccaccatgcccggctcatttt-gtatttttagtaaagacggggtttc-tccatgttcgtcaggctggt
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            9082 123 +    111706 gctcagatgatcctcccacttcagcctcctgagtagctggaatgacaggcgtgagccaccacacccagctgatttttgtatttttagtagagacagggtttctactatgctggccaggctggt
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     44355 123 + 192460366 gctcagatgatcctcccacttcagcctcctgagtagctggaatgacaggcgtgagccaccacacccagctgatttttgtatttttagtagagacaggttttctactatgctggccaggctggt
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     40829 123 - 187378091 gctcaggtgatcctcccacttcagcctcctgagtagctgggattacaggcgtgagccaccacgcccagctgatttttgtatttttagtagagacagggtttctactatactggccaggctggt
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   392016 122 -  91754291 gctcagatgatcctcccacttcagcctcctgagtagctggaatgacaggcgtgagccaccacgtccagctgatttttgtatttttagtagagacagggtttc-accatgctggccaggctggt
i chlSab2.chr15                C 0 C 0
e mm10.chr16                    65416131 1400 -  98207768 I
e canFam3.chr33                 29051866 1536 +  31377067 I
e calJac3.chr17                   906462 1955 -  74750902 I
e panTro4.chr3_GL389630_random     58456 2322 +    103936 I

a score=101456.000000
s hg38.chr3_KI270935v1_alt        100029 49 +    197351 ctcaaactcccgatctcaggtgatccacctgcctctgcctcccaaagtg
s ponAbe2.chr3                 199756881 49 + 202140232 ctcgaactcctggcctcaggtgatccacctgccttggcctcccaaagtg
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120836070 49 + 123690457 ctcaaactcccaacctcaggtgatccacctgcctcggcctcccaaagtg
i nomLeu3.chr11                C 0 I 293
s rheMac3.chrUn_JH291127            9205 49 +    111706 ctcgaactcctgacctcaggtgatccacctgcctcgccctcccaaagta
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     44478 49 + 192460366 ctcgaactcctgacctcaggtgatccacctgcctcgccctcccaaagta
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     40952 49 - 187378091 ctcgaactcctgacctcaggtgatccacctgcctcgccctcccaaagtg
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   392138 49 -  91754291 ctcgaactcctgacctcaggtgatccacctgccttgccctcccaaagtg
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   908417 49 -  74750902 ctccacctccagggctcaggtgatcctcccacctgagcctcctgagtag
i calJac3.chr17                I 1955 C 0
e mm10.chr16                    65416131 1400 -  98207768 I
e canFam3.chr33                 29051866 1536 +  31377067 I
e panTro4.chr3_GL389630_random     58456 2322 +    103936 I

a score=33370.000000
s hg38.chr3_KI270935v1_alt        100078 15 +    197351 ctgggatgacaggtg
s ponAbe2.chr3                 199756930 15 + 202140232 ctgggattacaggtg
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120836412 15 + 123690457 ctgggatgacaggtg
i nomLeu3.chr11                I 293 C 0
s rheMac3.chrUn_JH291127            9254 15 +    111706 ctgggattacaggcg
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     44527 15 + 192460366 ctgggattacaggcg
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     41001 15 - 187378091 ctgggattacaggcg
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   392187 15 -  91754291 ctgggattataggcg
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   908466 15 -  74750902 ctgggacaacaggcg
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65416131 1400 -  98207768 I
e canFam3.chr33                 29051866 1536 +  31377067 I
e panTro4.chr3_GL389630_random     58456 2322 +    103936 I

a score=32663.000000
s hg38.chr3_KI270935v1_alt        100093 13 +    197351 tgagccactgcgc
s ponAbe2.chr3                 199756945 13 + 202140232 tgagccactgcgc
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120836427 13 + 123690457 tgagccaccgcgc
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            9269 13 +    111706 tgagccaccgccc
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     44542 13 + 192460366 tgagccaccgccc
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     41016 13 - 187378091 tgagccaccgccc
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   392202 13 -  91754291 tgagccaccacac
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   908481 13 -  74750902 tgagccaccacac
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65417531 13 -  98207768 TGAGTCACTGTGG
i mm10.chr16                   I 1400 C 0
e canFam3.chr33                 29051866 1536 +  31377067 I
e panTro4.chr3_GL389630_random     58456 2322 +    103936 I

a score=458755.000000
s hg38.chr3_KI270935v1_alt        100106 152 +    197351 ccagccCTGATTTTCATCT--TACTGTTCTCCATTTGCAGGTGAAAATGGAGGTTTCCTCCTCCTGCGGCTGAGTGTGGCTTCCCCGGAAGACCTCACTGACCCCAGAGTGGCAGAAAGGCTGATGCAGCAGGTGAGTGGGCACTTTCCGGGCC
s ponAbe2.chr3                 199756958 152 + 202140232 ccagccCTGATTTTGATCT--TACTGTTCTCCATTTGCAGGTGAAAATGGAGGTTCCCTCCTCCTGAGGCTGAGTGTGGCTTCCCTGGAAGACCTCACTGACCCCAGAGTGGCAGAAAGGCTGATGCAGCAGGTGAGCGGGCACTTTCCGGGCG
i ponAbe2.chr3                 C 0 I 410
s nomLeu3.chr11                120836440 152 + 123690457 ccagccctgattttCATCC--TACTGTTCTCCATTCGCAGGTGAAAATGGAGGCTTCCTTCTCCTGCGACTGAGTGTGGCCTCCCTGGAAGACCTCACTGACCCCAGAGTGGCAGAAAGGCTGATGCAGCAGGTGAGCAGGCACTTTCCAGGCC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            9282 152 +    111706 ccagccCTGATTTTCATCT--TACTGTTCTCCATTTGCAGGTGAAAATGTAGGTTTCCTCCTCCTGCGGCTGAGTGTGGCCTCCCCGGAAGACCTCAGTGACCCCAGAGTGGCAGAGAGGCTGATGCAGCAGGTGAGTGGACACTTTCTGGGCC
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     44555 152 + 192460366 ccagccCTGATTTTCATCT--TACTGTTCTCCATTTGCAGGTGAAAATGTAGGTTTCCTCCTCCTGCGGCTGAGTGTGGCCTCCCCGGAAGACCTCAGTGACCCCAGAGTGGCAGAGAGGCTGATGCAGCAGGTGAGTGGACACTTTCTGGGCC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     41029 152 - 187378091 ccggccctgATTTTCATCT--TACTGTTCTCCATTTGCAGGTGAAAATGCAGGTTTCCTCCTCCTGCGGCTGAGTGTGGCCTCCCCGGAAGACCTCAGTGACCCCAGAGTGGCAGAGAGGCTGATGCGGCAGGTGAGTGGACACTTTCTGGGCC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   392215 152 -  91754291 ccagccCTGATTTTCATCT--TACTGTTCTCCATTTGCAGGTGAAAATGTAGGTTTCCTCCTCCTGCGGCTGAGTGTGGCCTCCCCGGAAGACCTCACTGACCCCAGAGTGGCAGAGAGGCTGATGCAGCAGGTGAGTGGACACTTTCTGGGCC
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   908494 131 -  74750902 ctggcCCCAA-TTTCATCT--TACTGTCCTCCATCTGCAGGTGAAAACGTAGGTTTCCTCCTCCTGCGGCTGAGTGTGGCCTCCCTGGAAGACCTCACTAATCCCAGAGTGGCAGAGAGGCTGATGCAGCAGGT--------------------
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65417544 138 -  98207768 TT-GCATTGCCTCTGGTCT--T----TTCTCAACTTTTAGGTGAAGATGGAGGCTTCCTCCTTGTACGGCTGACCGTGGCCTCCCCTAAGGACCTCACTGAGCACAACGCCAGAGAGAAGCTGATGAACCAGGTACATGTACACC---------
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29053402 154 +  31377067 CTGACCCACGTTCTCATCTCCTGCTTTCCTAAACCCGCAGATGGGGATGGAGGCTTTTTCCTCCTGCGGCTGAGTGTGGCCTCCCCAGAAGACCTCACTGACCCCAGAGTGGCAGAGAGGCTGGTGCAGCAGGTAAGGGAGCACTCTCGGGGCC
i canFam3.chr33                I 1536 C 0
e panTro4.chr3_GL389630_random     58456 2322 +    103936 I

a score=423216.000000
s hg38.chr3_KI270935v1_alt        100258 201 +    197351 AGGGGAGTAGAGGAAGGGGCGAGGTTCGCAGGGGCTGCAGGGAAGACCCGCAGGACACAGAAGAGCAGCTACCGCGCTTGGAAGGGAGTCTCGTTTCTTACGGAGAATTGGGAGCTGAATCTGAGGATCTCTGCCTGGCTTTGCTTCTGCCTGCCTTCTCCGAGTTCTTC-ATT-TCCTTCTCTGCAATGTAAACATGTGACT
s ponAbe2.chr3                 199757520 196 + 202140232 GGGGGAGTAGAGGAAGGGGCGAGGT-CGCAGGGGCTGCTGGGAAGACCCACAGGGCACAGAACAGCAGCTGCCGCACTTGGAAGGGAGTCTCGTTTCTTATGGAGAATTAGGAGCTGAATCTGAGGATCT--GCCTGGCTTTGCTTCTG--TTGCTGCTCCGAGTTCTTA-ATT-TCCTTCTCTGCAATGTAAACACGTGACT
i ponAbe2.chr3                 I 410 C 0
s nomLeu3.chr11                120836592 199 + 123690457 AGGGCAGTAGAGGAAGGGGTGAGGTTTGCAGGGGCTGCCGGGAAGACCCGCAGGACACAGAAGAGCAGCTACCACATTTGGAAGGGAGTCTCGTTTCTTACGGATAATTAGGAGCTGAATCTGAGGGTCTCTGCCTGGCTTTGCTTCTG--TGCCTTCTCCGAGTTCTTC-ATT-TCCTTCTCTGCAATGTAAACACGTGACT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            9434 201 +    111706 AGGGGAGTAGAGGAAGGCGTGAGGTTTGCAGGGGCTGCCGGGAAGACCCTCGGGACACGGAATCGCAGCTACCGCACTTGGAAGGGAGTCTCGTTTCTTACAGAGAATTGGGAGCTGCATCGGAGGATCTCTGCCTGGCTTTGCTTCTGCCTGCCTTCTCCGAGTTCTTC-GTT-TCCTTCTCTGCAGTGTAGACACATGACT
i rheMac3.chrUn_JH291127       C 0 I 21
s macFas5.chr2                     44707 201 + 192460366 AGGGGAGTAGAGGAAGGCGTGAGGTTTGCAGGGGCTGCCGGGAAGACCCGCGGGACACGGAAGAGCAGCTACCGCACTTGGAAGGGAGTCTCGTTTCTTACAGAGAATTGGGAGCTGCATCGGAGGATCTCTGCCTGGCTTTGCTTCTGCCTGCCTTCTCCGAGTTCTTC-GTT-TCCTTCTCTGCAGTGTAGACACATGACT
i macFas5.chr2                 C 0 I 1
s papAnu2.chr2                     41181 201 - 187378091 AGGGGAGTAGAGGAAGGCGTGAGGTTTGCAGGGGCTGCCGGGAAGACCCGCGGGACACGGAAGAGCAGCTGCCGCACTTGGAAGGGAGTCTCGTTTCTTACAGAGAATTGGGAGCTGCATCGGAGGATCTCTGCCTGGCTTTGCTTCTGCCTGCCTTCTCCGAGTTCTTC-GTT-TCCTTCTCTGCAGTGTAAACACATGACT
i papAnu2.chr2                 C 0 I 1
s chlSab2.chr15                   392367 201 -  91754291 AGGGGAGTAGAGGAAGGCGTGAGGTTTGCAGGGGCTGCCGGGAAGACCCACGGGACACAGAAGAGCAGCTACCGCACTTGGAAGGGAGTCTCGTTTCTTACAGAGAATTGGGAGCTGAATCGGAGGATCTCTGCCTGGCTTTGCTTCTGCCTGCCTTCTCTGAGTTCTTC-GTT-TCCTTCTCTGCAATGTAAACACATGACT
i chlSab2.chr15                C 0 I 2
s calJac3.chr17                   908625 191 -  74750902 ----GAGTAGAGGAAGGTGTGAGGTTGGCAGGGG-TGCAGGAAACGTCTGCGGGGCACAAAAGAGCAACCACTGCACATGGAAGGGAG-CTCG-CTCTTACAGAGAA--GGAGGCTTGGGAAGGAGGCCCCTGCCTGGC-TGGCTTCTGCCGGCCTTCTCCGAGCTCCTC-ATT-TCCTTCTCTGCAATGTGAACACGCGACT
i calJac3.chr17                C 0 I 2
s mm10.chr16                    65417682 168 -  98207768 --------AGGAGTAAGTGAGGGTCTCTTGGGAACTCCAGGGAGCATCTTCAGGGCAAGGGAGGTCAATGACTCCA--TGAAAGGGCATT--------------------AGGGCTGAA-CAGGGGCTCT-TGCCTGGCTTTGATCTCGCCAAGCTTCTC--AGTTCTTCTGAT-CTCTTTTCTGCCATGTGAATAAATACAT
i mm10.chr16                   C 0 I 3
s canFam3.chr33                 29053556 106 +  31377067 --------------------------------------AGGAAAGA---------------------------------GGAAGCGAGT-----------------ATTAGGAACTAAA--------TATCTGCTTGGCTTGGCTTCTGCCTATTTTTCCTGAGTTGGGA-ATTCCCCTTCTGTGCTACGTAAAAAGATTCTT
i canFam3.chr33                C 0 C 0
e panTro4.chr3_GL389630_random     58456 2322 +    103936 I

a score=-6754.000000
s hg38.chr3_KI270935v1_alt        100459 5 +    197351 --CCT--AG
s ponAbe2.chr3                 199757716 5 + 202140232 --CCC--AG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120836791 5 + 123690457 --GCC--GG
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     44909 5 + 192460366 --CCCAA--
i macFas5.chr2                 I 1 I 15
s papAnu2.chr2                     41383 3 - 187378091 --CCC----
i papAnu2.chr2                 I 1 C 0
s chlSab2.chr15                   392570 3 -  91754291 --CCC----
i chlSab2.chr15                I 2 C 0
s calJac3.chr17                   908818 3 -  74750902 --CGC----
i calJac3.chr17                I 2 C 0
s mm10.chr16                    65417853 3 -  98207768 --CCC----
i mm10.chr16                   I 3 C 0
s canFam3.chr33                 29053662 5 +  31377067 TCCCT----
i canFam3.chr33                C 0 C 0
e rheMac3.chrUn_JH291127            9635 21 +    111706 I
e panTro4.chr3_GL389630_random     58456 2322 +    103936 I

a score=339172.000000
s hg38.chr3_KI270935v1_alt        100464 145 +    197351 AGCCCCCAGT----TTCTTCTGGTCCTTGGAAGCTT-GGCCTTCTGGCCTCTGAGGCAAAGGTCAGTGATACTGATGGGAGGGTAGGTCggactcttggttgcaagtggcagaaacccaagtcagggcagtttatgcaaaaaaaaaaaaa
s ponAbe2.chr3                 199757721 145 + 202140232 AGCCCCCAAT----TTCTTCTGGTCCTTGGAAGCTT-GGCCTTCTGGCCCCTGAGGCGAAGGTCGGTGATATTGATGGGAGGGGAGGCCggactcttggttgtaagtggcagaaacccaagtgagagcagtttatgcaaaaacaaacaaa
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120836796 145 + 123690457 AGCCCCCAAT----TTCTTCTGGTCCTGGGAAGCTT-GGCCTTCTGGCCCCTGAGGTGAAGGTCAGTGATATTGATGGGAGGGtaggccggactcttggttgcaagtggcagaaacccaagtcagagcagtttatgcaaaaaaaaaaaaa
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            9656 133 +    111706 AACCCCCAAT----TTCTTCTGGTCCTTGGAAGCTT-GGCC--CTGGCCCCTGAGGAGAAGGTCAGTGATATTGATGGGAG-Gtaggcaggactcttggttgtaagtggcagaaacccaagtcagagcagtttatg--aaaaa-------
i rheMac3.chrUn_JH291127       I 21 C 0
s macFas5.chr2                     44929 135 + 192460366 AACCCCCAAT----TTCTTCTGGTCCTTGGAAGCTT-GGCC--CTGGCCCCTGAGGAGAAGGTCAGTGATATTGATGGGAG-Gtaggcaggactcttggttgtaagtggcagaaacccaagtcagagcagtttatgaaaaaaa-------
i macFas5.chr2                 I 15 C 0
s papAnu2.chr2                     41386 136 - 187378091 AACCCCCAAT----TTCTTCTGGTCCTTGGAAGCTT-GGCC--CTGGCCCCTGAGGAGAAGGTCAGTGATATTGATGGGAGCGTAGGCAGGACTCTTGGTTGTAAGTGGCAGAAACCCAAGTCAGAGCAGtttatgaaaaaaa-------
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   392573 133 -  91754291 AACCCGCACT----TTCTTCTGGTCCTTGGAAGCTT-GGCC--CTGGCCCCTGAGGAGAAGGTCGGTGATATTGATGGGAGAGtaggcaggactcttggctgtaagtggcagaaacccaagtcagagcagtttatg---aaaa-------
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   908821 130 -  74750902 -AACCCCAAC----TTCTTCCGGTCCTTGGAAGCTT-GGCCTTCTGGCCCCTGAGGAGATGGTCAGTGATACGGAGGGACG-Gtaggcaggactcttggttgcaagtggcagaaacccaagttatagcattttatac-------------
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65417856 125 -  98207768 AGCCCCAGATCCAATTTTTCAGGTCTTGGGAGTGCA-GGCCTTTT----------GAAAGAGCCAATGATATTAATGGGAAAGTAAGCAGAGAtttgggttgcaagaagcaggaa-ccagggcatggtagtttactt-------------
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29053667 132 +  31377067 CGCCCCCAAT----TTCCTCAGGCCATAGGAAGTTCAGGCCTTCTATCCCTTG-GGAGAAGATCAATGATATTAACGGGCAGAtaggcaggact-ttggttataaggagcagacacccaactcatcgtagcttataca------------
i canFam3.chr33                C 0 C 0
e panTro4.chr3_GL389630_random     58456 2322 +    103936 I

a score=515378.000000
s hg38.chr3_KI270935v1_alt        100609 156 +    197351 aaaaaaaaaaggcaaggtctgagaaacctacaagtgtctctt-cagcttcag-tac-ggctggatccagcagctccagcgccatcacagggactttctctttctttccctgtcttagctttact-cccttcattcttcagagtctttcttcatgtgtatg
s panTro4.chr3_GL389630_random     60778 156 +    103936 AAAAAAAAAAGGCAGGGTctgagaaacctagaagtgtctctt-cagcttcag-tac-ggctggatccagcagctccaatgccatcacggggactttctctttctctccctatcttagctctact-cccttcattcttcagagtctttcttcatatgtatg
i panTro4.chr3_GL389630_random I 2322 C 0
s ponAbe2.chr3                 199757866 149 + 202140232 ----caaaaaggcaaggtctgagaaacctagaagcatctctt-cagcttcag-tat-ggctggatccagcagctccaacactatcatggggattttctctttctcTCCCTG---TACCTCTACT-CCCTTCATTCTTCAGAGTCTTTTTTCATATGTATG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120836941 154 + 123690457 aaaaaaaaaaagcaaggtctgaggaacctagaagcttctctt-cagcttcag-tac-ggctggatccagcagcttcaacgcgatcacgggggctttctctttctctcgctgtcttagctctact-cccttcATTCTT--GAGTCTTTCTTCATATGTATG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            9789 156 +    111706 aaaaaaaaaaggcaaggtctgagaaacctagaagcatctcct-cagcttcag-tat-ggctggatccggcaactcaaaggtgatcacggggattttctctttctctccccgtcttagctctact-cccttcATTCTTCAGAGTCTTTCTTTATATGTATG
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     45064 156 + 192460366 aaaaaaaaaaggcaaggtctgagaaacctagaagcatctcct-cagcttcag-tat-ggctggatccggcaactcaaacgtgatcacggggattttctctttctctccccgtcttagctctact-cccttcATTCTTCAGAGTCTTTCTTTATATGTATG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     41522 157 - 187378091 acaaaaaaaaggcaaggtCTGAGAAACCTAGAAGCATCTCCT-CAGCTTCGG-TAT-GGCTGGATCCAGCAGCTCAAACGCGATCACGgggattttctctttctccccccGTCTTAGCTCTACTCCCCTTCATTCTTCAGAGTCTTTCTTTATATGCATG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   392706 156 -  91754291 aaaaaaaaaaggcaaggtctaagaaacctagaagcatctcct-gagcttcag-tat-ggctggatccggcaactcaaacgcgatcacggggattttctctttctctccctgtcttagctcaact-cccttcATTCTTCAGAGTCTTTCTTCATATGTATG
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   908951 152 -  74750902 --aaaaaacaggcaagctctgagaaacctggaagagtctcttccaccttcagttat-ggctggaccctgcagctcagatgtggccgtggggattt--tctttctctccctgcctcagctgtact-ccctttattcttc--agtctTTCTTCATGCATATG
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65417981 147 -  98207768 ----ggaaaagtcaaggtctgagaaatctacaggtggctcctccagctttgg-agtcagctggagccagcagtgcaaacacaatcat-gagatttcctctgtcccactc------agctctgtg-cccttcattcttcatggactttctccaTACATATG
i mm10.chr16                   C 0 I 1147
s canFam3.chr33                 29053799 151 +  31377067 gaaaagggaaggtagtggctgagacacctagaagtgactgttcaagcttcagttct-ggctggatccagcagctcagatgcgctcatccgggttttctctttctttacctctcttag--------ctctTCGTTGTTCAGAATCTCTCTCCATATGTAAG
i canFam3.chr33                C 0 C 0

a score=120997.000000
s hg38.chr3_KI270935v1_alt        100765 37 +    197351 aaaaggcagccTTGTTAGCCATAGATTCACAAGGGAC
s panTro4.chr3_GL389630_random     60934 37 +    103936 aaaaggcagccTTGTTAGCCATAGATTCACAAGGGAC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199758015 37 + 202140232 AAAAGGCAGCCTTGTTAGCCACAGATTCACAAGGCAC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120837095 37 + 123690457 AAAAGGCAGCCTTGTTAGCCGTAGATTCACAAGGCAC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            9945 37 +    111706 AAAAGGCAGCTTTGTTAGCCATAGATTCACAAGGCAC
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     45220 37 + 192460366 AAAAGGCAGCTTTGTTAGCCATAGATTCACAAGGCAC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     41679 37 - 187378091 AAAAGGCAGCTTTGTTAGCCATAGATTCACAAGGCAC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   392862 37 -  91754291 AAAAGGCAGCCTTGTTAGCCATAGATTCACAAGGCAC
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   909103 37 -  74750902 AAAAGGCGGCCTTGTTAGCCCTAGATTCACGAGGCAC
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29053950 34 +  31377067 GAAAGTTGGCTGTGACAGCCC--GAGTCAT-AGGCAC
i canFam3.chr33                C 0 C 0
e mm10.chr16                    65418128 1147 -  98207768 I

a score=13752.000000
s hg38.chr3_KI270935v1_alt        100802 4 +    197351 TTCC
s panTro4.chr3_GL389630_random     60971 4 +    103936 TTCC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199758052 4 + 202140232 TTCC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120837132 4 + 123690457 TTCC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            9982 4 +    111706 TTCC
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     45257 4 + 192460366 TTCC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     41716 4 - 187378091 TTCC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   392899 4 -  91754291 TTCC
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   909140 4 -  74750902 TTCC
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65418128 1147 -  98207768 I
e canFam3.chr33                 29053984 0 +  31377067 C

a score=723361.000000
s hg38.chr3_KI270935v1_alt        100806 338 +    197351 ATCTCCCCACATTTTCTTTTCTTTt-ttctttttctttctttc-----tttttgttttttgagacgaagtctcgctctgtcgcccaggctggagtgcagtggtgcgatctcagctcactgcaagctccgcctcctgggttcacgccattctcctgcctcagcct-cccaagtagctgggactacaggcgcccgccaccacgcccaactaatttttatgtttttttttttagtagagacggggtttcaccgtgttagccagaatagtctcaatctcctgacctcgtgatccacccgtcttggcctcccaaagtgctgggattacagacatgagccaccgcacccgg
s panTro4.chr3_GL389630_random     60975 337 +    103936 ATCTCCCCAAATTTTCTTCTCTTTt-ttctttttctttctttc-----tttttgttttttgagacgaagtctcgctctgtcacccaggctggagtgcagtggcgcgatctcagctcactgcaagctccgcctcctgggttcacgccattctcctgcctcagcct-cccaagtagctgggactacaggcgcccaccaccacgcccgactaatttttatgtatttttttt-agtagagacggggtttcaccgtgttagccaggatagtctcaatctcctgacctcgtgatccacccgtcttggcctcccaaagtgctgggattacagacatgagccaccgcgtccag
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199758056 339 + 202140232 CTCTCCCCAAATTTTCTTTTCTTTTCttttttctttctctttc-----tttcttttttttgagacgaagtcttgctctgtcgcccaggctagggtgcagtggcgtgatcttggctcactgcaagctccgcctcctgggttcacgccattctcctgcttcagcct-cccgagtagctgggactacaggcgcctgccaccacgcccggctaatttttatgtttttttttttagtagagacagggtttcaccgtgttagccaggatagtctcgatctcctgacctcgtgatccgcccgtcttggcctcccaaagtgctgggattacaggtgtgagccaccgcgccagg
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120837136 343 + 123690457 CTCTCCCCAAATTTTCTTTTCCTTTCTTTTttctgtttctttctttctttttttttttttgagacaaagtctcgctctgttgcccaggctggagtgcagtggcacaatctcagctcattgcaagctccgcctcccaggttcacgccattctcctgcctcagcct-ccccagtagctgggactacaggcgcccgccaccacacccggctattttttttgtatttttttt-agtagagacggggtttcaccgtgttagccaggatagtctcgatctcctgacctcgtgatctgcccgtcttggcctcccaaagtgctgggattacaggcatgagccaccgcgcccgg
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127            9986 326 +    111706 CTCTCCCCAACTTTtcttttcttct-----------ctctctc-----tttttttttcttgagatgaagtctcgctctgttgcccaggctggagtgcagtggtgtgacctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcccccccgagtagctgggactacaggcgcc-gccaccacgcctggctaatttttttgtattttttt--agtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatccgcccgtctcggcctcccaaagtgctgggattacaggtgtgagccaccacgcctgg
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     45261 326 + 192460366 CTCTCCCCAACTTTTCttttcttct-----------ctctctc-----tttttttttcttgagatgaagtctcgctctgttgcccaggctggagtgcagtggtgtgacctcgactcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcccccccgagtagctgggactacaggcgcc-gccaccacgcctggctaatttttttgtattttttt--agtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatccgcccgtctcggcctcccaaagtgctgggattacaggtgtgagccaccacgcctgg
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     41720 328 - 187378091 CTCTCcccaacttttcttttctttt-----------ctctctc-ttttttttttttttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggccggatctcagctcactgcaagctccgcctcccgggttcccgccattctcctgcctcagcctccccgagtagctgggactgaaggcgcc-gccaccacacccggctagtttttttgta--ttttt--agtagagacggggtttcaccgtgttcgccaggatggtctcgatctcctgacctcgtgatccgcccgtctcggcctcccaaagtgctgggattacaggtgtgagccaccacgcctgg
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   392903 325 -  91754291 CTCTCCCCAACTTttcttttcttct-----------ctctctc------ttttttttcttgagatgaagtctcgctctgtcgccgaggctggagtgcagtggtgtgacctcggctcactgcaagctctgcctcccgggttcacgccattttcctgcctcagcctccccgagtagctgggactacaggcgcc-gccaccacgcctggctaatttttttgtattttttt--agtagagatggggtttcaccatgttagccaggatggtctcaatctcctgacctcatgatttgcccatctcggcctcccaaagtgctgggattacaggcgtgagccactgcgcctgg
i chlSab2.chr15                C 0 C 0
e mm10.chr16                    65418128 1147 -  98207768 I
e canFam3.chr33                 29053984   0 +  31377067 C
e calJac3.chr17                   909144   0 -  74750902 C

a score=13022.000000
s hg38.chr3_KI270935v1_alt        101144 6 +    197351 ccCCCT
s panTro4.chr3_GL389630_random     61312 6 +    103936 ccCCCT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199758395 6 + 202140232 ccCCTT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120837479 6 + 123690457 ccCCCT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           10312 6 +    111706 GCCCCT
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     45587 6 + 192460366 GCCCCT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     42048 6 - 187378091 ggcCCT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   393228 6 -  91754291 GCCCCT
i chlSab2.chr15                C 0 C 0
s canFam3.chr33                 29053984 6 +  31377067 CTCCCT
i canFam3.chr33                C 0 C 0
e mm10.chr16                    65418128 1147 -  98207768 I
e calJac3.chr17                   909144 0 -  74750902 C

a score=183185.000000
s hg38.chr3_KI270935v1_alt        101150 54 +    197351 CTCCCCAAATTTTCATGTCAT-CTGGGGAAGTGCAGGTCTCCATGGCCTGCAAGG
s panTro4.chr3_GL389630_random     61318 54 +    103936 CTCCCCAAATTTTCATGTCAT-CCGGGGAAGCGCAGGTCTCCGTGGCCTGCAAGG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199758401 54 + 202140232 CTCCCCAAATTTTCATGTCAT-CCGGGGAAGAGCAGGTCTCCGTGGCCTGCAAGG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120837485 54 + 123690457 CTCCCCAAATTTTCATGTCAT-CCGGGGAAGAGCAGGTCTCCGTGGCCTGTAAGG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           10318 54 +    111706 CTCCCCTAATTTTCATGTCAT-CCGGGGAAGGGCAGGTCTCCGTGGCCTGCAAGG
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     45593 54 + 192460366 CTCCCCTAATTTTCATGTCAT-CCGGGGAAGGGCAGGTCTCCGTGGCCTGCAAGG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     42054 54 - 187378091 CTCCCCAAATTTTCATGTCAT-CCGGGGAAGGGCAGGTCTCCATGGCCTGCAAGG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   393234 54 -  91754291 GTCCCCAAATTTTCATGTCAT-CCAGGGAAGGGCAGGTCTCCGTGGCCTGCAAGG
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   909144 54 -  74750902 CTCCCCAAATTTTCATGTCAC-CCAGGGAAGGAAAGGTCTCCTTAGCCTGGAAGG
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29053990 55 +  31377067 CTCCCAAGATCTGCATATTATACTAGGGAAAGACTGATCTTACTGGTCTGCAAGG
i canFam3.chr33                C 0 C 0
e mm10.chr16                    65418128 1147 -  98207768 I

a score=730904.000000
s hg38.chr3_KI270935v1_alt        101204 251 +    197351 GTCACC----------------------------------------------------------------------------------------------ATGACTGACAACCCAGTCAGGATCCCATA-GA---GGAAGGATGAGCCCCA-AGAAAATAGGGAGGCTAGGCAGAAAAA--ACCGCAGAGATGTATACTCTAGATGAGGACCATGATTGGGATGTATTTGTA---CAAGTTGGGAAAATTCTCCTAAAACC-----CACTGGATAGAACTTCCAATGG--------------------------------------------TAAAGTTCCGGGGTCAGGG-TTTTGAGGATGGGGATGGTGTGGCTTGTTGG-AGGTTAGACTGGGTCAGCTCAG
s panTro4.chr3_GL389630_random     61372 251 +    103936 GTCACC----------------------------------------------------------------------------------------------ATGACTGACAACCCAGTCAGGATCCCATA-GA---GGAAGGATGAGCCCCA-AGAAAATAGGGAGGCCAGGCAGAAAAA--ACCCCAGAGATGTATACTCTAGATGAGGACCATGATTGGGATGTATTTGTA---CAAGTTGGGAAAATTCTCCTAAAACC-----CACTGGACAGAACTTCCAATGG--------------------------------------------TAAAGTTCCGGGGTCAGGG-TTTTGAGGATGGGGATGGTGTGGCTTGTTGG-AGGTTAGACTGGGTCAGCTCAG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199758455 251 + 202140232 GTCACC----------------------------------------------------------------------------------------------AGGACTGACAACCCAATCAGGATCCCATA-GA---GGAAGGATGATCTCCA-AGAAAATAGGGAGGCTAGGCAGAAAAA--ACCCCAGAGATGTATACTCTAGATGAGGACCATGATTGGGATGTATTTCTA---CAAGTTGGGAAAATTATCCTAAAACC-----CACTGGACAGAACTTCCAATGG--------------------------------------------TGAAGTTCCGGGGTCAGGG-TTTTGAGGATGGGTATGGTGTGGCTTGTTGG-AGGTTAGACTGGGTCAGCTCAG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120837539 252 + 123690457 GTCACC----------------------------------------------------------------------------------------------ATGACTGACAACCCAATCAGGATCCCACAGGA---GGAAGGATGGGCCCCA-AGAACATAGGGAGGCTGGGCAGAAAAA--TCCCCAGAGATGGGCACTGTAGATGAGGACCATGACTGGGATGTATTTGCA---CAGGCTGGGAAAATTCTCCTAAAACC-----CACTGGACGGAACTTCCGATGG--------------------------------------------TGAAATTCCGGGGTCAGGG-TTTTGGGGATGGGGATGGTGTGGCTTGTTGG-AGGTTAGACTGCGTCAGCTCAG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           10372 296 +    111706 GCCATC----------------------------------------------------------------------------------------------ACGACTGACTACCCAATCAGGATCCCATA-GA---GGAAGGACGAGCCCCA-AGAAAACAGGGAGGCTAGGCAGAAAAA---CCCCAGAGATGTACACCCTAGATGAGGACCAAGATTGGGAGGCATTTGTA---CAAGTTGGGAAAATTCTCCTGAAGCC-----CACTGGACAGAACTTCCGATGGTGAAATCCCGGGGCCTGGGCTCTCGGGGAAGGGGGTGGTGTGGCTGAAATCCCGGGGCCTGGGCTCTCGGGGATGCGGATGCTGTGGCCTGTTGGAAGGTTAGGCTGGGTCAGCTCCG
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     45647 252 + 192460366 GCCATC----------------------------------------------------------------------------------------------ACGACTGACAACCCAATCAGGATCCCATA-GA---GGAAGGACGAGCCCCG-AGAAAACAGGGAGGCTAGGCAGAAAAA---CCCCAGAGATGTACACCCTAGATGAGGACCAAGATTGGGAGGCATTTGTA---CAAGTTGGGAAAATTCTCCTGAAGCC-----CACTGGACAGAACTTCCGATGG--------------------------------------------TGAAATCCCAGGGCCTGGGCTCTCGGGGATGCGGATGCTGTGGCCTGTTGGAAGGTTAGGCTGGGTCAGCTCCG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     42108 252 - 187378091 GCCATC----------------------------------------------------------------------------------------------ACGACTGACAACCCAATCAGGATCCCATA-GA---GGAAGGATGAGCCCAG-AGAAAACAGGGAGGCTAGGCAGAAAAA---CCCCAGAGATGTACACCCTAGATGAGGACCAAGATTGGGAGGCATTTGTA---CAAGTTGGGAAAATTCTCCTGAAGCC-----CACTGGACAGAACTTCCGATGG--------------------------------------------TGAAATCCCGGGGCCGGGGCTCTCGGGGATGCGGATGCTGTGTCCTGTTGGAAGGTTAGGCTGGGTCAGCTCCG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   393288 296 -  91754291 GCCACC----------------------------------------------------------------------------------------------ACGACTGACAACCCAATCAGGATCCCATA-GA---GGAAGGATGAGCCCCG-AGAAAACAGGGAGGCTAGGCAGAAAAA---CCCCAGAGATGTACACTCTAGATGAGGACCAAGATTGGGAGGCATTTGTA---CAAGTTGGGAAAATTCTCCTGAAGCC-----CACTGGACAGAACTTCCGATGGTGAAATTCCGGGGCCAGCACTCTCGGGGATGCGGATGGTGTGGCTGAAATCCCGGGACTGGGGCTCTCGGGGATGCGGATGCTGTGGCTTGTTGGAAGGTTAGGCTGGGTCAGCTCCA
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   909198 342 -  74750902 GCCACTTATCCTGGTTCTCACCAGGAGGTGTCGCACTGCCTCCCACCCTGTGTCTGCTTCCCACTAAAAGAAGAAAGCAATTAAAAAACAAACCAAAAAACTGACTGACAACCCAATCAGGGTCCCACA-GA---GGAAGGATGAGCCCCA-AGGAAAGCGGGAGGTGAAGCAGAAGAAAAAGCCCATAGATGTACACTCCAGATGGGGACGGAGATTGGGATGGAGTTATA---CAAGTCGGGAAAATTCTCCTAAAACC-----CGCAGGACAGGACTTCCAAGGG--------------------------------------------TGAAATTCT-GGGTCAGGG-CGTC-----TGGGGATGGTGCGGCTTGCTGGAGGGTTAGACCGGGCCAGCTCAG
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65419275 229 -  98207768 GCCACT----------------------------------------------------------------------------------------------GTGATTTACATCTCAAAACACATCATAAATGG---GAAAAGAC---------ATGAAATAGGGATGCTAGATATAAAAC--CCCTTGGAGAT--ATGCTCCAGGCAAAGAGGAAGATTGTGGTGTCTTTGAATACCAATCTGGAGAAATTCTTTTA----T-----TCCTAGA--------CCATTAG--------------------------------------------TAAAATTCTGGGGTCAAGGCTCT------TGGGGATGCTATGAATGATTGGAAGACTAGACTGGGTCAGTTCAG
i mm10.chr16                   I 1147 C 0
s canFam3.chr33                 29054045 255 +  31377067 GCCACC----------------------------------------------------------------------------------------------ATGACTGACAGCTCAAAATGAACCACGTG-GAATGAGAAGGACAGGCCTCAGAGGCGCTGGGGATGCCAGGCAGAAAAT---ACCCATGGATGCATGTTCTAGATGAGGACCAAGATTGGGACATATTTGTA---TAAGTTGGGAAAATTCCCCTAAGACCCAGATCACAGGACAAAGGTCCCAGGGT--------------------------------------------CCGAAATCCAGGGGCAGAGCTTT------TGGGAATGGTGTGAGTCAGTGGGGGATCAGACTAGCGCAGCTCAG
i canFam3.chr33                C 0 I 8

a score=1158263.000000
s hg38.chr3_KI270935v1_alt        101455 464 +    197351 TGCAGATGTCACGGGCCTGGCCTCACTGAGGGGTGGGTTGTTCTCCTAATGTGTGGTACAAAGTAGCAGATGGGGCATGATGGGAAGTGTCTAAGCTCTGCTCACAGATGTAACC-GTGAAAACAGGCCCAGTGCACAGTCTAATGTGGATTGCCTCTTTGACAGTGCCCTTGCTAATACCTGAAGCTTGCATTCAGCACCTCTCACAGTCAATGGGACAGTGCCCTTGCTAATACCTGAAGCTTGCATTCAGCACCTCTCACAGTCAATGGGTGCCACACTGCTGAAAAGTGGCTCAGGCTTCCTGTCATCCCTTGCAAGGGTAAACCTGGCAGAGATGCTGGCTGGGGGTCTTATGCCAGGTGTAGAGTTC-ATAGCCAGGCTGGACAGGTGGAATGATTGCCCTTAG-CAGAGGGAAGCAAGATATGTCCGTGGAGAGTGGGATCCTTTGTTGCAGGCGAAAGA
s panTro4.chr3_GL389630_random     61623 464 +    103936 TGCAGATGTCACGGGCCTTGCCTCACTGAGGGGTGGGTTGTTCTCCTAATGTGTGGTACAAAGTAGCAGATGGGGCATGATGGGAAGTGTCTAAGCTCTGCTCACAGATGTAACC-GTGAAAACAGGCCCAGTGCATAGTCTAATGTGGATTGCCTCTTTGACAGTGCCCTTGCTAATACCTGAAGCTTGCATTCAGCACCTCTCACAGTCAATGGGACAGTGCCCTTGCTAATACCTGAAGCTTGCATTCAGCACCTCTCACAGTCAATGGGTGCCACACTGCTGAAAAGTGGCTCAGGCTTCCTGTCATCCCTTGCAAGGGTAAACCTGGCAGAGATGCTGGCTGGGGGACTTATGCCAGGTGTAGAGTTC-ATAGCCAGGCTGGACAGGTGGACTGATTGCCCTTAG-CAGAGGGAAGCAAGATATGTCCGTGGAGAGTGGGATCCTTTGTTGCAGGCGAAAGA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199758706 408 + 202140232 TGCAGATGTCACGGGCCTGGCGTCGCTGAGGGGTAGCTGGTTCTCCTACTGTGTGGTACAAAGTAGCAGATGGGGCATGATGGGAAGTGTCTAAGCTCTGCTCACAGATGTGACC-GTGAAAACAGGCCCAGTGCACAGTCTGATGTGGATTGCCTCTTT--------------------------------------------------------GACAGTGCCCTTGCTAATATCTGAAGCTTGCATTTAGCACCTCTCACAGTCAATGGGTGCTGCACCGCTTAAAAGTGGCTCAGGCTTCCTGTCATCCCTTGC-AGGGTAAACCTGGCAAAAATGCTGGCTGGGGGTCTTATGCCAGGTGTAGAGTTC-ATAGCCAGGCTGGACAGGTGGAATGATTGCCCTTAACCAGAGGGAAGCAAGATATGTCCGTGGAGAGTGGGATCCCTTGTTGCAGGCGAAAGA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120837791 408 + 123690457 TGCAGATGTCACGGGCCTGGCCTTGCTGAGGGGGCGGTGGTTCTCCTACTGTGCAGTACAAAGTAGCAGATGGGGCATGATGGGAAGTGTCTAAGCTCTGCTCACAGATGTGACC-GTGAAAACAGGCCCAGTGCAGAGTCTAATGTGGGTTGCCTCTTT--------------------------------------------------------GACAGCGCCCTTGCTGATACCTGAAGCTTGCATTTAGCACCTCTCAGAGTCAATGGGTGCCGCACCGCTTAAAAGTGGCTCAGGCTTCCTGTCATCCCTTGCAAGGGTAAACCTGGCAGAGATGCTGGCTGGGGGTCTTATGCCAGGTGTAGGGTTC-ACAGCCAGGCTAGACAGGTGGAGTGATTGCCCTTAG-CAGACGGAAGCAAGATATGTCCGTGGAGAGTGGGCTCCTTTGTTGCAGGCGAAAGA
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           10668 409 +    111706 TGCAGATTTCACGGGCCTGGCCTCGCTGAGGGGCGGGTGGTTCTCCTGCTGTGCGGTACACAGTAGCAGATGGGGCATGACGGGAAGTATCTAAGCTCTGCTCACAAACGTGACCAGTGAAAACAGGCCCGGTACACAGTCTAACGTGGATTGCCTCTTT--------------------------------------------------------GGCAGTGCCCTTGTCAGTACCCGAAGCTTGCATTTAGCACCTCTCACAGTCAATGGGGGCCGTACCACTTAAAAGTGGCTCAGGCTTATTGTCATCCCTTGCAAGGGTAAACCTGGCAGAGATGCTGGCTGGGGGTCTCATGCCAGGTGTAGAGTTC-ATAGCCGGGCTGGACAGGTGAAGTGATTGCCCTTTG-CAGAGGGAAGCAAGATACATCTGTGGAGAATGGGATCCTTTGTTGCAGGCGAAAGA
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     45899 409 + 192460366 TGCAGATTTCACGGGCCTGGCCTCGCTGAGGGGCGGGTGGTTCTCCTGCTGTGCGGTACACAGTAGCAGATGGGGCATGACGGGAAGTATCTAAGCTCTGCTCACAAACGTGACCAGTGAAAACAGGCCCGGTACACAGTCTAACGTGGATTGCCTCTTT--------------------------------------------------------GGCAGTGCCCTTGTCAGTACCCGAAGCTTGCATTTAGCACCTCTCACAGTCAATGGGGGCCGTACCACTTAAAAGTGGCTCAGGCTTATTGTCATCCCTTGCAAGGGTAAACCTGGCAGAGATGCTGGCTGGGGGTCTCATGCCAGGTGTAGAGTTC-ATAGCCGGGCTGGACAGGTGAAGTGATTGCCCTTTG-CAGAGGGAAGCAAGATACGTCTGTGGAGAATGGGATCCTTTGTTGCAGGCGAAAGA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     42360 409 - 187378091 TGCAGATTTCATAGGCCTGCCCTCGCTGAGGGGCGGGTGGTTCTCCTGCTGTGCAGTACACAGTAGCAGATGGGGCATGACGGGAAGTATCTAAGCTCTGCTCACAAACGTGACCAGTGAAAACAGGCCCGGTACACAGTCTAACGTGGATTGCCTCTTT--------------------------------------------------------GGCAGTGCCCTTGTCAGTACCCGAAGCTTGCATTTAGCACCTCTCACAGTCAATGGGGGCCGTACCACTTAAAAGTGGCTCAGGCTTATTGTCATCCCTTGCAAGGGTAAACCTGGCAGAGATGCTGGCTGGGGGTCTTATGCCAGGTGTAGAGTTC-ATAGCCGGGCTGGACAGGTGAAGTGATTGCCCTTTG-CAGAGGGAAGCAACATACGTCCGTGGAGAATGGGATCCTTTGTTGCAGGCGAAAGA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   393584 409 -  91754291 TGCAGATTTCATGGGCCTGGCCTCGCTGAGGGGAGGATGGTTCTCCTGCTGTGCGGTGCAAAGTAGCAGGTGGGGCATGACGGGAAGTATCTAAGCTCTGCTCACAAACGTGACCAGTGAAAACAGGCCCGGTACACAGTCTAACGTGGATTGCCTCTTT--------------------------------------------------------GGCAGTGCCCTTGTCAGTACCCGAAGCTTGCATTTAGCACCTCTCACAGTCAATAGGTACCGTACCACTTAAAAGTGGCTCAGACTTATTGTCATCCCTTGCAAGGGTAAACCTGGCAGAGATGCTGGCTGGGGGTCTTATGCCAGGTGTAGAGTTC-ATAGCCGGGCTGGACAGGTGAAGTGATTGCCCTTTG-CAGAGGGAAGCAAGATACGTCCGTGGAGAGTGGGATCCTTCGTTGCAGGTGAAAGA
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   909540 389 -  74750902 TGCAGATTTCACTGA---GGCCTCTCTGAGGCATGGATGGTTCTCCCACTGTGCGGTACAAAGCAGCAGAGGGAGCATG--------------AGCTCTGCTCACAGATGTGACCACGGAAAACAGGCCCAGTATAGAGCCTAACGTGG-TGGCCTCTTT--------------------------------------------------------GACGGTGCCCTTG-CAGTACCCAGAGCTTGCGTTTAGCACCTCTCACAGTCCATGGGTGCTACAGTGCTTATCAGTGGCTCAGGCTTACTGTCATCCCTTGCAAGGGTAATCCTGGCAGAGATATTGTGGGGGGGTCTTATGCCAGGTGCAGAATTC-ATAGCCAGGCTGGACA-GTGAAATGATTGCCCTTAG-CAGACAGAAGCAAGATATGTCCGTTGAGAGTGGGACCCATTGTTGCAGGCAAAGGA
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65419504 334 -  98207768 TATAAATGTCACAGGCCTAGC-TCAGTGCTGG---------TCTCGTG--------------------------------------------AACCTGTACT-------GTGAACAGTGAGGCTAGACCTGGTGCACCACCTAAGAT-AATGgcttctcc---------------------------------------------------------accctactctggcaaatgtctcagactt-cagccagcaccttccatagtcagtgagagtcacat----------tagttcatgctccatgccACCTAGTAAAGGAATAGACCCTGACGAGGGGCAGACCAGCAG-CTTCTGTTAGGGGTACAGTCCTGCTGCCAGAATAGACAGGTGAGGTGGTTGCCCTTA--CAGAGCGGAAGTTGCTGTTATCCCTGCCAGAAGGATCCCTCGGTGAATGCAAAAGA
i mm10.chr16                   C 0 I 440
e canFam3.chr33                 29054300   8 +  31377067 I

a score=213100.000000
s hg38.chr3_KI270935v1_alt        101919 74 +    197351 AAACC-----TCTGTCTGTCGTAAGTAAAAGGGGGATTTGTT-GGCAGCGTCCCAGAGTGCATAG-AATCAAAGCAATGCC
s panTro4.chr3_GL389630_random     62087 74 +    103936 AAACC-----TCTGTCTGTCGTAAGTAAAAGGGCGATTTGTT-GGCAGTGTCCCAGAGTGCATAG-AATCAAAGCAATGCC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199759114 81 + 202140232 AAACCCTCTGTCTGTCTGTCGTAAATTAAAATGGGAATTGTTGGGCAGCGTCCCCGAATGCATAGAAATCAAAGCAATGCC
i ponAbe2.chr3                 C 0 M 20226
s nomLeu3.chr11                120838199 74 + 123690457 AAACC-----TCTGTCTGTCATAAGTAAAAGGGGGATTTGCT-GGCAGCGTCCCAGAGTGCATAG-AATCAAAGCAATGCC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           11077 73 +    111706 AAACC-----TCTGTCTGTCATAAGTAAAAGGGGGATTTGTT-GGCAG-GTCCCAGAGTGCATAG-AATCAAAGCAATGCC
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     46308 73 + 192460366 AAACC-----TCTGTCTGTCATAAGTAAAAGGGGGATTTGTT-GGCAG-GTCCCAGAGTGCATAG-AATCAAAGCAATGCC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     42769 73 - 187378091 AAACC-----TCTGTCTGTCATAAGTAAAAGGGGGATTTGTT-GGCAG-GTCCCAGAGTGTATAG-AATCAAAGCAATGCC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   393993 73 -  91754291 AAACC-----TCTGTCTGTCATAAGTAAAAGGGGGATTTGTT-GGCAG-GTCCCAGAGTGCATAG-AATCAAAGCAATGCC
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   909929 72 -  74750902 AGACC-----TCTGTCTGTCATGAGTAAAAGGGGGATTTGTT-GGCAGGGTCT--GAGTGCATAG-AATCAAAGGAATGCC
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65420278 64 -  98207768 AAAGC-----TCTTTGCTTTGCAAACAAGGGGA----------GAGAGAACCCCAGA-TGCACAG-AAGCAAAGGAATGGC
i mm10.chr16                   I 440 C 0
e canFam3.chr33                 29054300  8 +  31377067 I

a score=221848.000000
s hg38.chr3_KI270935v1_alt        101993  96 +    197351 AGGACAGCAGGCTTGGAAAATAGGCAGGAGGGCCCCCA----------GGAGCTCTGAGGTCCAGACAGTGGGATCAGGCTGGCTGGGACACTGTCCCTCTTGCTG
s panTro4.chr3_GL389630_random     62161  96 +    103936 AGGACAGCAGGCTTGGAAAATAGGCAGGAGGGCCCCCA----------GGAGCTCTGGGGGCCAGACGGTGGGATCAGGCTGGCTGGGACACTGTCCCTCTTGCTG
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120838273  96 + 123690457 AGGAGAGCAGGCTTGGAAAATAGGCAGGAGGGCCCCCA----------GGGGCTCTGGGGGCCAGACAATGGGATCACGCTGGCTGGGACACTGTCCCTCTTGCTG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           11150 106 +    111706 AGGACAGCAGGCTCGGAACATAGGCAGGAGGACCCCCAGGGGAGTGCGGGGGCTCTGGGGGCCAGACAGTGGGACCACGCTGGCTGGGACACGGTCCCTCTTGCTG
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     46381 106 + 192460366 AGGACAGCAGGCTCGGAACATAGGCAGGAGGACCCCCAGGGGAGTGCGGGGGCTCTGGGGGCCAGACAGTGGGACCACGCTGGCTGGGACACGGTCCCTCTTGCTG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     42842 106 - 187378091 AGGACAGCAGGCTTGGAACATAGGCAGGAGGACCCCCAGGGGAGTGCGGGGGCTCTGGGGGCCAGACAGTGGGACCACGCTGTCTGGGACACGGTCCCTCTTGCTG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   394066 105 -  91754291 AGGACAGCAGGCTCGGAACATAGGCAGGAGGACCCCCAGGGGAGTGCGGGGGCTCT-GGGGCCAGACAGTGGGGTCACGCTGGCTGGGACACGGTCCCTCTTGCTG
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   910001  95 -  74750902 AGGACAGCAGGCTTGGGACATAGGCAGGAGAACCCCCA----------GGGGCTCT-GGGGCCAGACAGCGGGAACACGCTGGCTGGGACACGGTCACTCTTGCTG
i calJac3.chr17                C 0 I 800
s mm10.chr16                    65420342  58 -  98207768 AGAAGAGCAGCTTTG----ACAAGCATAAAGA-------------------------------------------CATGCTTCCTAGGACACTGTC-CTCTTGCCG
i mm10.chr16                   C 0 C 0
e canFam3.chr33                 29054300   8 +  31377067 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=381665.000000
s hg38.chr3_KI270935v1_alt        102089 163 +    197351 GTCAGTCACTATTGGATGCTGCCACAGCCAAGGGGCATCACGTGGCCTGCACACACA--TTCACA--TAGGTTCTCGctgcctttttgtctcactggactttttgctccagagccaaagtcctgagtaggaacatttgataggctgagcttagcccttgtactccca
s panTro4.chr3_GL389630_random     62257 163 +    103936 GTCAGTCACTATTGGATGCTGCCACAGCCAAGGGGCATCACGCGGCCTGCACACACA--TTCACA--TAGGTTCTCGctgcctttttgtctcactggactttttgctccagagccaaagtcctgagtaggaacatttgataggccgagcttagcccttgtactccca
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120838369 163 + 123690457 GTCAGTCACTATTGGATGCCGTCACAGCCAACGGGCATCACGCAGCCTGCGCACACG--TTCACA--CAGGTTCTCGCTGCCTTTTTGTCTCGCTGGACTTTTTGCTCCAGAGCCAAAGTCCTGAGTAGGAACATTCGATAGGCCGAGCTTAGCCCTTATACTCCCT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           11256 163 +    111706 GTGAGTCACTACTGGACGCTGCCACAGCCGACGGGCGTCATGCGGCCTGCGCACACG--TTCACA--CGGGTTCTCGCTGCCTTTTTGTCTCGCTGGACTTTTTgctccagagccaaagtcctgagtaggaacatctgataggcagagcttagcccttgtgctcccg
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     46487 163 + 192460366 GTGAGTCACTACTGGACGCTGCCACAGCCGACGGGCGTCATGCGGCCTGCGCACACG--TTCACA--CGGGTTCTCGCTGCCTTTTTGTCTCGCTGGACTTTTTGCTCCAGAGCCAAAGTCCTGAGTAGGAACATTTGATAGGCCGAGCTTAGCCCTTGTGCTCCCG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     42948 163 - 187378091 GTGAGTCACTAGTGGACGCTGCCACAGCCGACGGACGTCATGCGGCCTGCGCACACG--TTCACA--CGGGTTCTCGCTGCCTTTTTGTCTCGCTGGACTTTTTGCTCCAGAGCCAAAGTCCTGAGTAGGAACATTTGATAGGCCGAGCTTAGCCCTTGTGCTCCCG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   394171 163 -  91754291 GTGAGTCACTACTGGACGCTGCCACAGCCGACGGCCGTCATGCGGCCTGCGCACACG--TTCACA--CGGGTTCTCGCTGCCTTTTTGTCTTGCTGGACTTTTTGCTCCAGAGCCAAAGTCCTGAGTAGGAACATTTGATAGGCCGAGCTTAGCCCTTGTGCTCCCG
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   910896 159 -  74750902 GTCAGTCACTATTGGATGCTGCCACAGCTGACGGGCATCATGCTGCCCATGCACACGATTTCACA--TGGGTTCTTGCTGCCTTTTTGTCTCG--GGGTCACCTG--TCAGAGCC--AGTCCTGAGTGGGAATATTCGATAGGCTGAGCTTAGCTCTTGTGCTCCCA
i calJac3.chr17                I 800 C 0
s mm10.chr16                    65420400 141 -  98207768 ------------TG--------CACTGTCCGTGGATGTCGTGCTTCCTCCATGTGCC--GTCACAAGTGGGTTCCCACTGGGACATCGTCTT--TGGGCTGCTGGTTGCAGGGCCAAAGCTCTGAGCAGGAGCGTCCAATCAGCCATGTTTGGCTCTTGTACCAC--
i mm10.chr16                   C 0 C 0
e canFam3.chr33                 29054300   8 +  31377067 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=509179.000000
s hg38.chr3_KI270935v1_alt        102252 214 +    197351 tgagcccacagccaggtgccaggggacgggaagaagggatg-----tctgtgtccttggagttctcttagcagcagtgaggccaatcgtgactcccactgt----gaggagttccctaaacatggcacggggg-ctcgacacccgatggccaaataagtgacaaatgcccCCGGCATGTGATAATCAAAGTAGCGAGTGTGAATCCTTGTGGGAGAGGGAAGCC
s panTro4.chr3_GL389630_random     62420 214 +    103936 tgagcccccagccaggtgccaggggacgggaagaagggatg-----tctgcgtccttggagttctctcagcagcagcgaggccgatcgtgactcccgctgt----aaggagttccctaaacatggcacggggg-ctcgacacccgacggccaaataagtgacaaatgcccCCGGCACGTGATAATCAAAGTAGCGAGTGTGAATCCTTGTGGGAAAGGGAAGCC
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120838532 213 + 123690457 TGAGCCCACAGCCAGGTGCCAGGGGATGGGAAGAAGGGATA-----TCTGTGTCCTTGGAGTTCTCTTAGCAGCAGCGAGGCCCATcgtgactcccactgt----aaggagttccctaaacatggcacggggg-tttgacacccgatggccaaataaatgacaaatg-cccCGGCACGTGATAAGCAAAGCAGCGAGTGTGAATCCTTGTGGGAGGGGGAAGCC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           11419 214 +    111706 tgagtccacagccaggtgccaggggatgggaagaagggata-----tctgcatccttggagttctcttagtggcagcgaggcccatcaagactcctaccgc----aaggagttccctaaacatagcacggaga-ttcgacccccgatggccaaataaatgacaaatgCTCCCGGCACATGACAATCAAAGTAGCGAGTGTGAATCCTTGTGGAAGAGGGAAGCC
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     46650 214 + 192460366 TGAGTCCACAGCCAGGTGCCAGGGGATGGGAAGAAGGGATA-----TCTGCATCCTTGGAGTTCTCTTAGTGGCAGCGAGGCCCATCAAGACTCCTACCGC----AAGGAGTTCCCTAAACATAGCACGGAGA-TTCGACCCCCAATGGCCAAATAAATGACAAATGCCCCTGGCACGTGACAATCAAAGTAGCGAGTGTGAATCCTTGTGGAAGAGGGAAGCC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     43111 209 - 187378091 TGAGTCCACAGCCAGGTGCCAGGGGATGGGAAGAAGGGATA-----TCTGCATCCTTGGAGTTCTCTTAGTGACAGCGAGGCCCATCAAGACTCC-----C----AAGGAGTTCCCTAAACATAGCAAGGAGA-TTCGACCCCCGATGGCCAAACAAATGACAAATGCCCCCGGCACGTGACAATCAAAGTAGCGATTGTGAATCCTTGTGGAAGAGGGAAGcc
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   394334 211 -  91754291 TGAGTCCACAGC---GTGCCAGGGGATGGGAAGAAGGGATA-----TCTGCATCCTTGGAGTTCTCTTAGTGGCAGCGAGGCCCATCAAGACTCCCACCGC----AAGGAGTTCCCTAAACATAGCACGGAGA-TTCGACCCCCGATGGCCAAATAAAGGACAAATGCCCCTGGCACGTGACAATCAAAGTAGCGAGTGTGAGTCCTTGTGGAAGAGGGAAGCC
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   911055 198 -  74750902 T-AGTGCACACCCAGTTGCCAGGGGCTGGGAAGAGGGGATA-----TGGGCATCCCTGACGTTCTCTCCGTGGCAGCGAGGCCCATCATAACTCCCACTGTCATGGAGGAGCTCCCTGAACATGGCATGGGGG-TTTGATGCCAGGTGG-------------------CCTCGGCACACAGTAACCAAAGGAGCACGTGTGGACCCCTGTTGAAGAGGGAGGCC
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65420541 188 -  98207768 ----------------TACCCAGGGATATTAAGAGGGAATAAATATTCTGGCTTTCCAGA-CTCTCTGGTAACAAGGGAGGCTCAC--TGACCTTCTTCCT----GAGGATTCCTGTCCATAGAGCATCAACG-TTTGAT--------GTAGGACAGATGGCAGGTG--TCTGTCACA--AACATCAAAGTGGCGAGTGCAAATCCTCATGGGAGAGAGAAGCC
i mm10.chr16                   C 0 I 26
s canFam3.chr33                 29054308 213 +  31377067 TGTGGCCACATCTTGCTGCCAGGGGATGAGAAGGGGGAATA-----ACCGGGCCCTTGAAGTTCTCTTAGTGGAAA-GGGGCCCGTCGGGACTCCCATAGT----AAGAAGCGCCCTGAACGCCGCATGGCGGCTTTGAAAGTGGACAG-CAGAGACATGACCAATGCCTACCGCGCATGATAATCAAAATGGGAAGTGTGAACCCTCGCCAAGGAGGGAGGCC
i canFam3.chr33                I 8 C 0
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=2300.000000
s hg38.chr3_KI270935v1_alt        102466 1 +    197351 A
s panTro4.chr3_GL389630_random     62634 1 +    103936 A
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120838745 1 + 123690457 A
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           11633 1 +    111706 A
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     46864 1 + 192460366 A
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     43320 1 - 187378091 a
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   394545 1 -  91754291 A
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   911253 1 -  74750902 G
i calJac3.chr17                C 0 I 1
s canFam3.chr33                 29054521 1 +  31377067 A
i canFam3.chr33                C 0 I 254
e mm10.chr16                    65420729 26 -  98207768 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=572251.000000
s hg38.chr3_KI270935v1_alt        102467 384 +    197351 ATTGCttttgttttgttttgttttgttttgttttgttttgttttgttttctgagactgagtctcactctgtcatccaagctggagtgcagtggtgcgatcttggctcaccacaacctccgcctcccaggttcaagccattctcctgcctcaaccttctgagtagctgggattacaggcccgcaccaccatacctggctaatttttgtatttttagtagagatggagtttcaggtttcagcatcttggccaggctagtcttgaactcttgacctcatgatccacccacctcagcctcccaaagtgctgggattacaggcgttgagtcattgcgtccggcTGGGAAGCCAGttttctttttctttttctttt----------------tctttctctttttc
s panTro4.chr3_GL389630_random     62635 370 +    103936 GTTGC----------ttttgttttgttttgttttgttttgttttgttttctgagactgagtctcactctgtcgcccaagctggagtgcagtggtgcgatcttggctcaccacaacctccgcctcccaggttcaagccattctcctgcctcaaccttctgagtagctgggattacaggcccgcaccaccatacctggctaatttttgtatttttagtagagatggagtttcaggtttcagcatcttggccaggctagtcttgaactcttgacctcgtgatccacccacctcagcctcccaaagtgctgggattataggcgttgagtcattgcgcccggcTGGGAAGCCAGT----tttttctttttctttt----------------tctttctctttttc
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120838746 350 + 123690457 Gttgt--------------------ttttgttttgttttcttttcttttctgagactgagtctcgctctgtcgcccagcctggagtgcaatggtgcgatcttggctcactgcaacctccgcctcccaggttcaagccattctcctgcctcaaccttctgagtagctgggattacaggcccgcaccaccatacccggctaatttttgtatttttaggagagatggagtttcaggtttcaccatgttggtcaggctagtcttgagctcttgaccttgtgatccacccgcctcggcctcccaaagtgccgggattataggca-tgagtcattgcgcctggcTGGGAAGCCAGt-------------tttgttt----------------tctttttctttttt
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           11634 369 +    111706 GTTG----------------------tttgttttgttttgttttgttttctgagagtgtgtctcgctctgtcg-ccaggctggagtgtagtggtgagatctcggctcactgcaacctccacctcccaggttcaagacattctcctgcctctgcctcccgagtagctgggattacaagcccgcgccagcaaacc-ggctaatttttacatgtttagtagagacggggtttcaggtttcaccatcttggccaggctagtctcgaactcttgaccttgtgatccactcacctcagcctcccaaagtgctgggattacaggca-tgagtcattgcgcctggcTGGAAAGCCAGTtttgtttttttctttttccc------tttctctctttctctttctttctc
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     46865 371 + 192460366 Gttgt----------ttatgttttgttttgttttgttttgttttgttttCtgagactgtgtctcgctctgtcg-ccaggctggagtgtagtggtgagatctcggctcactgcaacctccacctcccaggttcaagacattctcctgcctccgcctcccgagtagctgggattacaagcccgcgccagcaaacc-ggctaatttttacatgtttagtagagacagggtttcaggtttcaccatcttggccaggctagtctcgaactcttgaccttgtgatccactcacctcagcctcccaaagtgctgggattacaggca-tgagtcattgcgcctggcTGGAAAGCCAGTTTTGTTTTtttctttttctc----------------tctctctctttctc
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     43321 360 - 187378091 gttg----------------------tttgttttgttttgttttgttttctgagactgtgtctcgctctgtcgcccaggctggagtgcagtggtgcgatctcggctcactgcaacctccacctcccaggttcaagacattctcctgcctccgcctcccgagtaggtgggattacaagcccGCGCCAGCaaacc-ggctaatttttacatgtttagtagagacggggtttcaggtttcaccatcttggccaggctagtctcgaactcttgaccttgtgatccacccacctcagcctcccaaagtgctgggattacaggca-tgagtcattgcgcCTGGCTGGAaagccagttttgtttttttctttttctt----------------tttgtctttctctc
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   394546 378 -  91754291 Gttgt----------t----------tatgttttgttttgttttgttttctgagactgtgtctcactctgttgcccaggctggagtatagtggtgcgatctcggctcactgcaacttccacctcccaggttcaagacattctcctgcctccgcctcccgagtagctgggattacaaacctgcgccagcaaacc-agctaatttttatatgtttagtagagacggggtttcaggtttcaccatcttggccaggctagtctcgaactcttgaccttctgatccacccacctcagcctcccaaagtgctgggattacaggcg-tgagtcattgcgcctggcTGGAAAGCCAGTTTTGTTTTtttctttttctctttctctttctctctttctctttctttctc
i chlSab2.chr15                C 0 C 0
e mm10.chr16                    65420729  26 -  98207768 I
e canFam3.chr33                 29054522 254 +  31377067 I
e calJac3.chr17                   911254   1 -  74750902 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=702568.000000
s hg38.chr3_KI270935v1_alt        102851 325 +    197351 ttttcttttcttttattttt---cttgagacagattctcgctctgtcgtccag-----gctggagtgcaatggcacgatctcggctcactgcaacctccacctcccggattcaagcaattctcctgcctcaacctccctagtagctgggattacaggtgcacactaccactcctggctaatttttgtatttttagtagagatggggtttctccatgttggtcaggctggtctcgaactcctgacctcaggtgacccacctgcctctgcttcccaaagcactgggattattggcgtgagccaccgcacccggccGGGAAGCCAGTTTTGAATCT
s panTro4.chr3_GL389630_random     63005 325 +    103936 ttttcttttcttttattttt---cttgagacggattctctctctgtcgtccag-----gctggagtgcaatggcatgatctcggctcactgcaacctccgcctcccggattcaagcaattctcctgcctcaacctccctagtagctgggattacaggtgcacactaccactcctggctaatttttgtatttttagtagagatggggtttctccatgttggtcaggctggtctcgaactcctgacctcaggtgacccacctgcctctgcttcccaaagcactgggattattggcgtgagccaccgcacccagccGGGAAGCCAGTTTTGAATCT
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120839096 320 + 123690457 ttttcttttc-----ttttt---cttgagacagattctcgctctgtcatccag-----gctggagtgcaatggcgcaatcttggctcactgcaacctctgcctcccagattcaagcgattctcctgcctcaacctccctagtagctgggattacaggcgcccaccaccactcctggctaatttttgtatttttagtagagacggggtttctccatgttggtcaggctggtctcgaacacctgacctaaggtgacccacccacctctgtttcccaaagcactgggattattggtgtgagccactgcacccggcTGGGAAGCCAGTTTTGAATCT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           12003 330 +    111706 tttctctttctcttcttttt---cctgagacagattctcactctgttgtccagagtgcaatggagtgcaatggcgcgatctcggctcactgcaacctccgcctccctggttcaagcaattctcctgcctcagtctcctgagtacctgggactacaggtgcccaccaccactcccggctaatttttgtattattagtagagacggggtttctccatgttggtcaggttggtcttgaactcctgacatcaaatgacccacccacctcagcttcccaaagcactgggattattggcgtgagccaccgcatctagccAGGAAGCCAGTTTTGAGTCT
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     47236 330 + 192460366 tttctctttctcttcttttt---cctgagacagattctcactctgttgttcagagtgcaatggagtgcaatggcgcgatctcggctcactgcaacctccgcctcccaggttcaagcaattctcctgcctcagtctcctgagtacctgggactacaggtgcccgccaccactcccggctgatttttgtatttttagtagagacggggtttctccatgttggtcaggttggtcttgaactcctgacatcaaatgacccacccgcctcagcttcccaaagcactgggattattggcgtgagccaccgcatctagccAGGAAGCCAGTTTTGAGTCT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     43681 330 - 187378091 tttctctttctcttcttttt---cttgagacagattctcactctgttgtccagagtgcaatggagtgcaatggcgcgatctcggctcactgcaacctccacctcccaggttcaagcaattctcctgcctcagtctcctgagtacctgggattacaggtgcccgccaccactcccggctgatttttgtatttttagtagagacggggtttctccatgttggtcaggttggtcttgaactcctgacatcagatgacccacccgcctcagcttcccaaagcactgggattattggcgtgagccaccgcatcaaGCCAGGAAGCTAGTTTTGAATCT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   394924 330 -  91754291 tttctctttctcttcttttt---cctgagacagattctcgctctgttgtccagagtgcaatggagtgcaatggcgcgatctcggctcactgcaacctctgcctcccaggttcaagcaattctcctgcctcagtctcccgagtagctgggattacaggtgcccaccagcacacccggctgatttttgtgtttttagtagagacggggtttctccatgttgatcaggttggtcttgaactcctgacatcaggtgacccatccacctcagcttcccaaagcactgggattattggcgtgagccaccgcacctagccAGGAAGCCAGTTTTGAATCT
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   911255 326 -  74750902 ttttctttccttttatttattgctttgagacag--tctcgctctgtcgtccgg-----gctgaagtgcgatgctgtgatcttggctcactgcaacctccgtctcccgggttcaagtgattgtcctgccttggcctcctgagtagctgggattggaggtgcccaccaccacacctggctaatttttgtatttttagtagagacagggccttgccatgttggccaggctggtcttgaactcctgacttcaggaaatccacctgcctcggcttcccaaagtgatgggattatgggtgtgagcccccgtgcccagccAGGAAGCCAGGTTTGAATGT
i calJac3.chr17                I 1 C 0
e mm10.chr16                    65420729  26 -  98207768 I
e canFam3.chr33                 29054522 254 +  31377067 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=31454.000000
s hg38.chr3_KI270935v1_alt        103176 16 +    197351 CAGGTCTAAGCCCCCA-
s panTro4.chr3_GL389630_random     63330 16 +    103936 CAGGTCTAAGCCCCTA-
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120839416 16 + 123690457 CAGGTCTAAGCCCCCA-
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           12333 16 +    111706 CAGGTCTGCGCTCCCA-
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     47566 16 + 192460366 CAGGTCTGCGCTCCCA-
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     44011 16 - 187378091 CAGGTCTGCGCTCCCA-
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   395254 16 -  91754291 CAGGTCTGCGCTCCTA-
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   911581 15 -  74750902 CAGGTCTGAACCCCC--
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29054776 17 +  31377067 CAGATGCGAGCCCCCTA
i canFam3.chr33                I 254 C 0
e mm10.chr16                    65420729 26 -  98207768 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=247961.000000
s hg38.chr3_KI270935v1_alt        103192 91 +    197351 AACCAGAAATGATTTCAGGAATCGGAAAGAAACCG-CGAGATCAGGAGCAGGTCAAGCAGCTGAGGCGCAGGCACCAGGCCACATGG-GGTTG
s panTro4.chr3_GL389630_random     63346 91 +    103936 CACCAGAAATGATTTCAGGAATCGGAAAGAAACCG-GGAGATCAGGAGCAGGTCAGGCAGCTGAGGCACAGGCACCAGGCCACGTGG-GGTTG
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120839432 91 + 123690457 AACCAGAAATGATTTCAGGAATCGGAAAGAAACTG-GGAGATCAGGAGCAGGTCAAGCAGCTGAGGCGCAGGCACCAGGCCATGTGG-GGTTG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           12349 91 +    111706 AACCGGAAATGATTTCAGGAATCGGAAAGAAACTG-GGTGATCGGGAGCAGGTCGGGCAGCTGAGGCGCAGGCACCAGGCCCTGTAG-GGTTG
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     47582 91 + 192460366 AACCGGAAACGATTTCAGGAATCGGAAAGAAACTG-GGTGATCAGGAGCAGGTCGGGCAGCTGAGGCGCAGGCACCAGGCCCTGTAG-GGTTG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     44027 91 - 187378091 AACCGGAAATGTTTTCAGGAATCGGAAAGAAACTG-GGTGATCAGGAGCAGGTCGGGCAGCGGAGGCGCGGGCACCAGGCCCTGTAG-GGTTG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   395270 91 -  91754291 AACCGGAAATGATTTCAGGAATCGGAAAGAAACTG-GGTGATCAGGAGCAGGTCGGGCAGCTGAGGCGCAGGCACCAGGCCCTGTAG-GGTTG
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   911596 78 -  74750902 -----GAAATGATTTCAGGAATCGGAAAGACACC----------GGAACAGGCCCGGTAGCTGAGGCGCAGGCACCAGGCCATGTGGAGGTTG
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65420755 92 -  98207768 AACTAGCAGATGTTTCAGAGGTCAGAGAGCAACCGTGGAGTTCAGGATCAGGTCAGGCAGCTGAGGTCTAGGAGTGAGGCCACATGG-GATTG
i mm10.chr16                   I 26 I 279
s canFam3.chr33                 29054793 86 +  31377067 AACTGGAAACCATTTCAGGAGTCAGAAAGGGGCCA-GGGAGGAGGAAGCAGGTCAGG-AGCTGAAGTGCAAGCACCATGC----GGG-TGCTG
i canFam3.chr33                C 0 C 0
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=86066.000000
s hg38.chr3_KI270935v1_alt        103283 40 +    197351 GGCATCAGTTCTC--GTCCGGGGACAGCCCAACAG--TTTGGGC
s panTro4.chr3_GL389630_random     63437 40 +    103936 GGCATCAGTTCTC--GTCCGGGGACAGCCCAACAG--TTTGGGC
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120839523 42 + 123690457 GGTGTCAGTTCTCGTGTCCGGGGACAGCCCAACAG--TTTGGGC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           12440 39 +    111706 GGCGTCAGTTCTC--GTCCGGGGACAGCCC-ACGG--TTTGGGC
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     47673 39 + 192460366 GGCGTCAGTTCTC--GTCCGGGGACAGCCC-ACGG--TTTGGGC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     44118 39 - 187378091 GGCGTCAGTTCTT--GTCCGGGGACAGCCC-ACGG--TTTGGGC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   395361 38 -  91754291 GGCGTCAGTTCTC--GTCCGGGAACAG-AC-ACGG--TTTGGGC
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   911674 39 -  74750902 GGTGTCAGTTCTT--GTCTGGGGACAGCTg-acag--tttgggc
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29054879 40 +  31377067 GGTGTGAGTTCTC--GT-TGGGAGTAGGAC-ACAGACCCAGGGC
i canFam3.chr33                C 0 C 0
e mm10.chr16                    65420847 279 -  98207768 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=2353067.000000
s hg38.chr3_KI270935v1_alt        103323 875 +    197351 TCGGGGATTagacaatgagcttaggaaccagctagatctgggtgtgaattctagttcccaactgtgtgatcttggataagttattctatgcgactttcatcccttataaaatgaggatcctaacacctgctttataaggttgctgtgaggtttagatgacataatgtgtgtgaggcaccagcctgtgtccagcatgtaggaggcCCAGGAAGGGTTGCCGTCCTCCGCATGCACTCTGCCCCAGTGTCCCTTCCT-GTCCTCTGCCTCTGGCGAGCTCATGGGCCAGAT--GGGCTGAAAGGA-CAGCTGGCTCTTTTGCTCTCCAGCTCCACCGGGAACTCCACGCCCACGCGCCTCACTTCCAGGTCTCCTTACTGCGTGTCAGGAGAGGCTAACGGACATCAGCTGCAGCCAGGCATGTCCCGTATGCCAAAAGAG-G--GTGCTGCCCCTAGCCTGGG-CCC-----CCACCGACAGACTGCAGCTGCGTTACTGTGCTGAGAGGTACCCAGAAGGTTCCCATGAAGGGCAGCATGTCCAAGCCCCTGACCCCAGATGTGGCAACAGGACCCTCGCTCACATCCACCGGAGTGTATGTGT---GGGGA--GGGGCTTCACCTGTTCCCAGAGGTGTCCTTGGACTCACCTTGGCACATGTTCTGTGTTTCAGTAAAGAGAGACCTGATCAC------CCATCTGTGTGCTTCCATCCTGCATTAAAATTC-ACTCAGTGTGGCC-CAGAGGCTGTCTA-TTGA---TCTGCATG-----------------CTTTCGCCATTTTTATAGTACAGGGATT--GTGTATAGTCTCACTGCTACCTCC-TCCTTCTACTCCCCCAGGTCTTGGTTTGGACTTTGATGATAGCATTTACTGAGACGGG-CCTGGAGCCTGTCGAAC
s panTro4.chr3_GL389630_random     63477 874 +    103936 TCAGGGATTagacaatgagcttaggaaccagctagatctgggtgtgaattctagttcccaactgtgtgatcttggataagttattctatgcgactttcatcccttataaaatgaggatcgtaacacctgctttataaggttgctgtgaggtttagatgacataatgtgtgtgaggcaccagcctgtgtccagcatgtaggagg-cCAGGAAGGGTTGCCGTCCTCCGCATGCACTCTGCCCCAGTGTCCCTTCCT-GTCCTCTGCCTCTGGCGAGCTCATGGGCCAGAT--GGGCTGAAAGGA-CAGCTGGCTCTCTTGCTCTCCAGCTCCACCGGGAACTCCACGCCCACGCGCCTCACTTCCAGGTCTCCTTACTGCGTGTCAGGAGAGGCTAACGGACATCAGCTGCAGCCAGGCATGTCCCGTATGCCAAAAGAG-G--GTGCTGCCCCTAGCCTGGG-CCC-----CCACCGACAGACTGCAGCTGCGTTACTGTGCTGAGAGGTACCCAGAAGTTTCCCATGAAGGGCAGCAGGTCCAAGCCCCTGACCCCAGATGTGGCAACAGGACCCTTGCTCACATCCACCGGAGTGTATGTGT---GGGAA--GGGGCTTCACCTGTTCCCAGAGGTGTCCTTGGACTCACCTTGGCACATGTTCTGTGTTTCAGTAAAGAGAGACCTGATCAC------CCATCTGTGTGCTTCCATCCTGCATTAAAATTC-ATTCAGTGTGGCC-CAGAGGCTGTCTA-TTGA---TCTGCATG-----------------CTTTCGCCATTTTTATAGTACAGGGATT--GTGTGTAGTCTCACTGCTACCTCC-TCCTTCTACTCCCCCAGGTCTTGGTTTGGACTTTGATGATAGCATTTACTGAGACGGG-CCTGGAGcctgttgaac
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120839565 867 + 123690457 TCAGGGATTagacaatgagcttcggaaccagctggatctgggtgtgaattctagttcccaactgtgtgatcttcgataagttattccacgcgactttcatcccttataaaatgaggatcgtaacacctgctttacaaggttgctgtgaggtctagatgacataatgtgtgtgaggcaccagcctgtgtcgggcatgtaggaggcCCAGGAAGGGTTGCCGTCCTCCGCATGCACTCTGTCCCACTGTCCCTTCCT-GTCCTCTGCCTGTGGTGAGCTCATGGGCCAGAT--GGGCTGAAAGGA-CAGCTGGCTCCCTTGCTCTCCAGCTCCGCCGGGAACTCCATGCCCACGTGCCTCGCCTCCAGGTCTCCTTACTGCGCGTCAGGAGAGGCTAACGGACATCAGCTGCAGCCAGGCATGTCCTGTACACCAAAAGAG-G--GTGCTGCCCC-GGCCTGGG-CCC-----CCACCGACAGACTGCAGCTGCGTTACGGTGCTGAGAGGTACAC--AAGGTTCCCAGGAAGGGCAGCAGGTCCAAGCCCCTGACCCCAGATGTGGCAACAGGACCCTCGCTCCCGTCCACCAGAGTATATGTGT---GGGGA--GGGGCTTCACCTGTTCCCAGAGGTGTCCTTGGACTCACCTTGGCACATATTCTGTGTTTCAGTAAAGAGAGACCTGCTCAC------CCATCTGTGTGCTTCCGTCCTGCATTAAAATTC-ACTCGGTGTGGCC-CAGAGG----CTA-CTGA---TCTGCATG-----------------CTTTCGCCATTTTTACAGTACAGGGA-T--GTGTATAGTCTCACTGCTACCTCC-TCCTCCTACTCCCCCAGGTCTTGGTTAGGACTTTGATGATAGCATTTACTGGGATGGG-CCTGGAGcctgttgaac
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           12479 872 +    111706 TCAggaattagacaatgagcgtcggaaccagctagatctgggtgtgaattctagttcccaactgtgtggtcttggataagttattctatgcgactttgatcccttataaaatgaggatcataacacctgctttataaggtttctgtgaggtttagatgacataatgtgtgtgaagcaccagcctgtgtccggcatgtaaggggtccaggaagggttgccgtccatcaCATGCACTCTGCCCCACTGTCCCTTCCT-GTCCTCTGCCTATGGCGAGCTCATGGGTCAGAG--GGGCTGAAAGGACCACCTGGCTCCCTTGTTCTCCAGCTCCGCCAGGAACTCCACGCCCACGCGCCTCACTTCCAGGTCTCCTTACTGCGCATCAGGAGAGGCTAACAGACATCAGCTGCAGCCAGGCCTGTCCTGTATGCCAAAAGAA-G--GTGCTGCCCATGGCCTGGG-CCC-----CCACCAACAGACTGCAGATGCATTACTGTGCTGAGAGGTACCAAGAAGTTTCCTGTGAAGGGCAGCCGGTCCAAGCCCCTGACCCCAGATGTGGCAACAGGA-CCTCGCTCACGGCCACCGGAGCATATATGC---GGGGA--GGGGCTTCACCTGTTCCCAGAGGTGTCCTTGGACTCACCTTGGCACATGTTC--TGTTTCAGTAAAGAGAGACCTGATCAG------CCATCTGTGTGCTTCCATCCTGCATGAAAATTC-ACTCAGCGTGGTC-CAGAGGTTGTCTG-TTGA---TCTGTATG-----------------CTTTCGCCGTTTTTACGGTAGAGGGATT--GTGGATATTCTCACTGC-ACCTcc-tccttccactcccccaggtcttggtttgcactttgatgatagcatttactgagacggg-cctggagcctgttgaac
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     47712 872 + 192460366 TCAggaattagacaatgagcttcggaaccagctagatctgggtgtgaattctagttcccaactgtgtggtcttggataagttattctatgcgactttgatcccttataaaatgaggatcataacacctgctttaaaaggtttctgtgaggtttagatgacataatgtgtgtgaagcaccagcctgtgtccagcatgtaaggggtccaggaagggttgctGTCCATCACATGCACTCTGCCCCACTGTCCCTTCCT-GTCCTCTGCCTATGGCGAGCTCATGGGTCAGAG--GGGCTGAAAGGACCACCTGGCTCCCTTGTTCTCCAGCTCCGCCAGGAACTCCACGCCCACGCGCCTCACTTCCAGGTCTCCTTACTGCGCATCAGGAGAGGCTAACAGACATCAGCTGCAGCCAGGCCTGTCCTGTATGCCGAAAGAA-G--GTGCTGCCCATGGCCTGGG-CCC-----CCACCAACAGACTGCAGCTGCATTACTGTGCTGAGAGGTACCAAGAAGTTTCCTGTGAAGGGCAGCCGGTCCAAGCCCCTGACCCCAGATGTGGCAACAGGA-CCTCGCTCACGGCCACCGGAGCATATATGT---GGGGA--GGGGCTTCACCTGTTCCCAGAGGTGTCCTTGGACTCACCTTGGCACATGTTC--TGTTTCAGTAAAGAGAGACCTGATCAG------CCATCTGTGTGCTTCCATCCTGCATTAAAATTC-ACTCAGCGTGGTC-CAGAGGTTGTCTA-TTGA---TCTGTATG-----------------CTTTCGCCGTTTTTACGGTAGAGGGATT--GTGGATATTCTCACTGC-Acctcc-tccttccactcccccaggtcttggtttgcactttgatgatagcatttactgagacggg-cctggagcctgttgaac
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     44157 872 - 187378091 TCAGGAATTAGACAATGAGCTTCGGAACCAGCTAGATCTGGGTGTGAATTCTAGTTCCCAACTGTGTGGTCTTGGATAAGTTATTCTATGCGACTTTGATCCCTTATAAAATGAGGATCATAACACCTGCTTTAGAAGGTTTCTGTGAGGTTTAGATGACATAATGTGTGTGAAGCACCAGCCTGTGTCCAGCATGTAAGGGGCCCAGGAAGGGTTACCGTCCTCCACATGCACTCTGCCCCACTGTCCCTTCCT-GTCCTCTGCCTATGGCGAGCTCATGGGTCAGAG--GGGCTGAAAGGACCACCTGGCTCCCTTGTTCTCCAGCTCCGCCAGGGACTCCACGCCCACGCGCCTCACTTCCAGGTCTCCTTACTGCGCATCAGGAGAGGCTAACAGACATCAGCTGCAGCCAGGCCTGTCCCGTACGCCAAAAGAA-G--GTGCTGCCCATGGCCTGGG-CCC-----CCACCAACAGACTGCAGCTGCATTACTGTGCTGAGAGGTACCAAGAAGTTTCCCGTGAAGGGCAGCCGGTCCAAGCCCCTGACCCTAGATGTGGCAACAGGA-CCTCGCTCACGGCCACCGGAGCGTATATGC---GGGGA--GGGGCTTCACCTGTTCCCAGAGGTGTCCTTGGACTCACCTTGGCACGTGTTC--TGTTTCAGTAAAGAGAGACCTTATCAG------CCATCTGTGTGCTTCCATCCTGCATTAAAATTC-ATTCAGCATGGTC-CAGAGGTTGTCTA-TTGA---TCTGTATG-----------------CTTTCGCCGTTTTTACGGTAGAGGGATT--GTGAATATTCTCACTGC-ACCTCC-TCCTTCCACTCCCCCAGGTCTTGGTTTGCACTTTGATGATAGCATTTACTGAGACGGG-CCTGGAGCCTGTTGAAC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   395399 872 -  91754291 TCAggaattagacaatgagcttcggaaccagctagatctgggcgtgaattctagtccccaactgtgtggtcttggataagttattctctgcgactttgatcccttataaaatgaggatcgtaacacctgctttataaggtttctgtgaggtttagatgacatcatgtgtgtgaagcaccagcctgtgtccagcacgtaagGGGCCCAGGAAGGGTTGCCGTCCTCCACATGCGCTCTGCCCCACTGTCCCTTCCT-GTCCTCTGCCTACGGTGAGCTCATGGGTCAGAG--GGGCTGAAAGGACCACCTGGCTCCCTTGTTCTCCAGCTCCGCCAGGGACTCCACGCCCACGCGCCTCACTTCCAGGTCTCCTTGCTGCGCGTCAGGAGAGGCTAACAGACATCGGCTGCAGCCAGGCCTGTCCCGTACGCCAAAAGAA-G--GTGCTGCCCATGGCCTGGG-CCC-----CCACCCACAGACTGCAGCTGCATTACTGTGCTGAGAGGTACCCAGAAGTTTCCTGTGAAGGGCAGCCGGTCCAAGCCCCTGACCCTAGATGTGGCAACAGGA-CCTCGCTCACGGCCACCGGAGCATATATGC---AGGGA--GGGGCTTCACCTGTTCCCAGAGGTGTCCTTGGACTCACCTTGGCACATGTTC--TGTTTCAGTAAAGAGAGACCTGATCAG------CCATCTGTGTGCTTCCATCCTGCATTAAAATTC-ACTCAGCGTGGTC-CAGAGGTTGTCTA-TTGA---TCTGTATG-----------------CTTTCGCCGTTTTTACGGTAGAGGGATT--GTGGATATTCTCACTGC-ACCTcc-tccttccactcccccaggtcttggtttgcactttgatgatagcatttactgagacggg-cctggagcctgttgaac
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   911713 868 -  74750902 tcagggattggacaatggactttggaaccagccagatttgggtgtgaattctagttcctaactgtgtggcgttggatgagtgattcgttgcgactttcgtcccttacaatatgagggtcataacacctgctttataaggttgctgtgaagttttgatgacatcgtgtgtg-aagcccccagcctgagtctagcGTGTGGGAGGCCCGGGGAGGGTTGCCGTCCTCCTCACGCGCTCTG-CCCACTGTCCCTTCCT-GTCCTCTGCCTGTGGTGAGCTCACGGG-CAGAT--GGTCTGAAAGGACCGCCTGGCTCCCTTGCTCTCCAGGTCCGCCGCGAACTCCACGCCCACGTGCCTCTCCTCCAAGTCTCCTTACTGCGCATCAGGAGAGGCTAGCGGACATCAGCTGCAACCAGGCATGTTTCATATGCCAAAAGAG-G--GGGCTGCCCACGGCCTGGG-CCC-----CTACCAGCAGACTGGAGCTGCATTGCTGTGTGGAGAGGCACCCAGAAGTTTCTCATGAAGGGCAGCCGGCCCAAGCCCCTCACCCCAGATGTGGTAACAGGACCCTAGCTCCCGTATAGTGGAGTATATGTGT---GGGGAGGGGGGCTTCACCTGTTCCCAGAGGTGTCCTTGGACTCACCTTGGCACATGTTCTGTGTTTCAGTAAAGAGAGACCTGATCAC------CCATCTGCGTGCT----TCCTGCCTTAACCTTC-ACTCAGTATGACC-CA---GCTGTCCG-TTGA---CTTGTGTG-----------------CTCTCGCCATCTTTACAGTCTAGGGGTT--GTGAATGTGCTCATGGCTCCCTCCTTCCTTCCAATGCCCCAGGTCTTGCTTTGGACTTTGATTA-AGCATTTAGTGAGACTGG-CCTGGAGCCAGTGGAAC
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65421126 775 -  98207768 TTGAGATCTGGCcaatg-gcccaggagtcaggcagatctgaggttgggttctatt----agctgtgtaggtttgattacttcagtccttactacctttacatcctacagaatgaggttcagagcacctg-------------ctgtgAGTTTTAAGT--------------------------------------------GGCCCAGGAAGCATTGTGGATGTCC------------CTCCACTGCCCCTTTCTCGTCCTTGCCGTACGGTGGGCTCCCAGG-CAGAT--AGGCTGGGTACCCCACAT-GTTATTTTGTTTTCCAGCTCCGCCGTGAACTGCACGCCCGCATGCCACTTGTCCACATGTCCTTCCTGAGCATCAGGAGGGGTTGAGGAATGCTAGCTGCAACCAGGCATGGCCTCTGTGCCAGAAGAACG--GTGATGCC----ACCGAGG-CCCAAACGCTACCAACAGACCACAGCCACAGTTCTGTGCT---ATGGACTCCAAAGTTTCTCATGAAGGCCAGCTGGCTCGAGAGCCCTCCCCCATACCTGACCACAAGACCTTGGTCCACTTATGCCTGAGTGTATGTGC-AAGGGGA--GGGGCTG-ACCTCTTTTCAGAGATGTCCCTCACATCCTCTGCCTGGTTATTG--TATTTCGGTAAAGGGAGACCTGATCAC------TCACCTGTGCTCTTCTGTTTTGTACTCAGTGAC-CCTCAGTATAACCTCAGAGATTATCTG-TAGGGATCCCAGGTG-----------------CCTTAGATGTTTTTACTACGTGGGAATTTGGGGAGTGATTTC-CTGTTGCCTGA-T-------------------TTGGTTTGACATT-----------TTTACCAAGACTTGCCCTGGAGCCTGTTGAAC
i mm10.chr16                   I 279 I 961
s canFam3.chr33                 29054919 883 +  31377067 TCGgg-------------gctctggagccatatggatctgggggtgaattccacttcctgactctgtgaacttgggtaggttgttccatgttattttcttcctctataaaacgaaggt-acagcacctgcttcctaaggttacagtgaggt-tggacgacataatgtgcgcgaagca-cAGTCCGGGCCCAGGCT----GGGGCGCGGAGACTGCTGCTGGCCTCCCTGTGCGTTTGCTCCCACTGTCTCGTCCT-GTTCTCGGCCTGTGGGGAGCTCACGGGCCACATTCGGGCTGGAAGTACCTTCTGCTCCTTTTGCCCTCCAGCTCTGCCGTGAACTGCATGCCCACCTGCCTCCCACCCGGGTCTCTCTGCTGCATGTCACGAGGGGCTGAGGCACATCAGCCGCAGCCAGGGGTGG-CTGTGGGCCCAAAGGG-GCAGCGCTGCCGGCGGCCTGGGACCC-----CCACTTCCCGACTGGAGCTACGCTACAG-GCTGC-ATGTACCTGGAAGCTTCCC-CGAAGGTCAGCT-GCCTAAGGCCTTG-CCCCAGACACTGCAGCGGGACCCTGGCCCACATATGCCAG-GTGTGTGTGTTGGGTGGG--GGGGCTTCCCTTGTT-CCAAAGATGCCCTTGGACTCCCTCTGGCACATGTGTCATGTTGCAGTAAAGAGTGATCTGATCACCTGTCACCCTCGTTGTGCTTCTCTCGGACATTAGAATTCTGCACGGTGTGGCC-CAGAGGTTATCTGTTTGA---GCCATATAGGTTGTTTGGTTAAGGTTTTTTTACGTTTTTATGATACAGGGATT--TTGTGCATCCTCCCTACAACCgccctcctcattctcccctggttcttggtttggaccttgattatggcacttacggaggctggccctggagtctgttgaac
i canFam3.chr33                C 0 C 0
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=550139.000000
s hg38.chr3_KI270935v1_alt        104198 245 +    197351 AGCCCgctgcagcagggcagggaccacctttgttcatctcagtatcccctgaa-ctagcagagtgtctggcctgcagtgggatcgcagagaa----tgtGGAATTGACCTAAATTTAAATTTCAAGTTCTGGACACAAGC------------------------CTCAATTATTCCTCT--TATATGTTATAACTTACATGCTATTATTTTTTTAAAAAATTAATATGGTT-TACTTTTTATTATA----AAAGTAAAACTTggcca---ggctc---agtggctca
s panTro4.chr3_GL389630_random     64351 245 +    103936 agcccgctgcggcagggcagggaccacctttgttcatctcagtatcccctgaa-ctagcagagtgtctggcctgcggtgggatcgcagagaa----tgtGGAATTGACCTAAATTTAAATTTCAAGTTCTGGACACAAGC------------------------CTCAGTTATTCCTCT--TATATGTTATAACTTACATGCtattatttttttaaaaaattaatatGGTT-TACTTTTTATTATA----AAAGTAAAACTTgacca---ggctc---agtggctca
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120840432 245 + 123690457 aatgcactgtggcagggcaggaaccacctttgttcatctcaatatcccctgaa-ctagcagagcgtctggcctgcggtgggattgcagagaa----tgtGGAATTGACCTAAATTTAAATTTCAAGTTCTGGACACAAGC------------------------CTCAATTATTCCTCT--TATATGTTATAACTTACATGCTATTATTTTTTTAAAAAATTAATATGGTT-TACTTTTTATTATA----AAAGTAAAACTTggccg---ggcac---agtggctca
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           13351 242 +    111706 agggcgctgtggcagggcaggggccacctttgttcatctcagtatctcctgaa-ctagcagagcgtctggcctgcggtgggatcacagagaa----tgtGGAATTGACCTAAATTTAAATTTCAAGTTCTGGACACAAGC------------------------CTCAATTATTCTTCT--TATATGTTATAACTTACATGCtatta-ttttttaaaaaattaatatggtt-tactttttattat------aattaaaaCTTggtca---ggcac---actggctca
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     48584 244 + 192460366 agggcgctatggcagggcaggggccacctttgttcatctcagtatctcctgaa-ctagcagagcgtctggcctgcggtgggatcacagagaa----tgtGGAATTGACCTAAATTTAAATTTCAAGTTCTGGACACAAGC------------------------CTCAATTATTCTTCT--TATATGTTATAACTTACATGCTATTA-TTTTTTAAAAAATTAATATGGTT-TACTTTTTATTATA----AAAGTAAAACTTggtca---ggcac---actggctca
i macFas5.chr2                 C 0 I 319
s papAnu2.chr2                     45029 239 - 187378091 AGTGCTCTATGGCAGGGCAGGGGCCACCTTTGTTCATCTCAGTATCCCCTGAC-CTAGCAGAGCGTCTGGCCTGCGGTGGGATCGCAGAGAA----TGTGGAATTGACCTAAATTTAAATGTCAAGTTCTGGACACAAGC------------------------CTCAATTATTCTTCT--TATATGTTATAACTTacatgctatta--tttttaaaaaattaatatggt-----tttttattaga----aaagtaaaacttggcca---ggcac---actggctcc
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   396271 239 -  91754291 agtgcgctacggcagggcaggggccacctttgttcatctcagtatcccctgaa-ccggcagagcgtctggcctgcagtgggatcacagagaa----tgtGGAATTGACCTAAATTTAAATTTCAAGTTCTGGACACAAGC------------------------CTCAATTATTCTTCT--TATATGTTATAACTTACATGCTATTA--TTTTTAAAAAATTAATATGGT-----TTTTTATTAGA----AAAGTAAAACTTggcca---ggcac---actggctca
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   912581 255 -  74750902 AGTGAGTGACAGCAGGGCAGAGGCCACCTCTGTTCACCTCAGTATCCCTTGAG-CTGGCAGGGCATCGAGCCTGTGGTAAGGACGCAGAGAC----TGTGGAATTGACCTGAATT------TCAAGTTCTGGACACAAGCAGATTCAAAAGAAAGTCTGCGATACTTGATTATTCCTCT--CATGTCTTATAACGTACGTGTTACTA--TGTTTTAAAATTAAATGTGGTT-TACTTTTTATTA----------TAAAACTTggcca---ggtgc---agtggctca
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29055802 272 +  31377067 tttgagctccttcagagcagggaccatattt-----tctcagtatcctttgaacctagcagagcgcctggcctgtggtaggatcacagagaatgcctgttggattgacttgaatT------TCAAGTTCTGGACATAAGC-AGATCACAGGAAAGTCTGCAGTACTCAATTATTCCTCTCCTCTAGCTCGTAAGT--CGAGttatta-ttattattattattattattattattattattattatATTTTAAAATTAAATGTGGTTATggggctcctgggtggctca
i canFam3.chr33                C 0 I 202
e mm10.chr16                    65421901 961 -  98207768 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=1093.000000
s hg38.chr3_KI270935v1_alt        104443 1 +    197351 c
s panTro4.chr3_GL389630_random     64596 1 +    103936 c
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120840677 1 + 123690457 t
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           13593 1 +    111706 t
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     49147 1 + 192460366 t
i macFas5.chr2                 I 319 C 0
s papAnu2.chr2                     45268 1 - 187378091 t
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   396510 1 -  91754291 t
i chlSab2.chr15                C 0 I 319
s calJac3.chr17                   912836 1 -  74750902 t
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65421901 961 -  98207768 I
e canFam3.chr33                 29056074 202 +  31377067 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=399814.000000
s hg38.chr3_KI270935v1_alt        104444 201 +    197351 gcctgtaatcccagcactttgggaggccgaggccggtggatcac--gaggtcaggagtttgagactagcctggccaacatggtgaaaccccgtctctactaaaaacacgaaaattagctgggtgtggtggcaggtgcctgtaatcccagctacccaggaggctgagacgggagaatcacttgaacccgggaggcagaggttgc
s panTro4.chr3_GL389630_random     64597 201 +    103936 gcctgtaatcccagcactttgggaggccgaggccggtggatcac--gaggtcaggagtttgagactagcctggccaacatggtgaaaccccgtctctactaaaaacacgaaaattagctgggtgtggtggcaggtgcctgtaatcccagctacccaggaggctgagacgggagaatcacttgaacccgggaggcagaggttgc
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120840678 201 + 123690457 gcctgtaataccagcactttgggaggccgaggccggtggatcat--gaggtcaggagtttgagactagcctggccaacatggtgaaaccccgtctctactaaaaacacaaaaattagctgggcgtggtggcaggtgcctgtaatcccagctaccagggagtctgaggcgggagaatcgcttgaacccgggaggcggaggttgc
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           13594 203 +    111706 gcctgtaataccagcactttgggaggctggagtgggtggatcacttgagctcaggggtttgaggctggcctgaacaacatggcaaagccctgtctctacgaaaaatacaaaagttagctgggtgtaattgtggacacctgtattcccaggtactcgtgaggctgaggtgggaggatcacttgaacccgggagacagaggttgc
i rheMac3.chrUn_JH291127       C 0 I 278
s macFas5.chr2                     49148 201 + 192460366 gcctgtaatcccagcactttgggaggccgaggcaggcggatcac--gaggtcaggagtttgagaccaacctggccagcatggtgaaactctgtctctacaaaaaacacagaaattagctgggtgtcgtggcaggggcctgtaatcctagctactcgggaggctgaggcaggagaattgcttgaacctgagaagcagaggttgc
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     45269 202 - 187378091 gcctgtaataccagcactttgggaggctggagtgggtggatcacttgagctcaggggtttgagactggcctgaacaacatggcaaggc-ctgtctctacgaaaaatacagaagttagctgggtgtgattgtggacacctgtattcccaggtactcgtgaggctgaggtgggaggatcacttgaacccgggagacggaggttgc
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   396830 201 -  91754291 gcctgtaatcccagcactttgggaggccgaggcaggcagatcac--gaggtcaggagtttgagaccagcctggccagcatggtgaaaccctgtctctacaaaaaacacagaaattagctgggtgtggtggcaggtgcctgtaatcctagctacttgggaggctgaggcaggagaattgcttgaacctgagaagcagaggttgc
i chlSab2.chr15                I 319 C 0
s calJac3.chr17                   912837 201 -  74750902 gcctgtaatcccaggactttggaaggctgagctgggcggatcgcttgagctcaggagtctgagactggcctgggtaacatggtgaaactctgtctctac-aaaaatacacaaattagctaggtgtaatggcgcacacctgta-tcccaggtactctcgcgactgaggtgggaggatcacttgaacccgggagatggagattgc
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65421901 961 -  98207768 I
e canFam3.chr33                 29056074 202 +  31377067 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=78266.000000
s hg38.chr3_KI270935v1_alt        104645 78 +    197351 agtgacccaagatcctaccactgcaccccagcctgggcaaaagggcaagactctgtctc--ataaataaataaattt--aaa---------
s panTro4.chr3_GL389630_random     64798 78 +    103936 agtgagccaagatcctgccactgcaccccagcctgggcaaaagggcaagactctgtctc--ataaataaataaattt--aaa---------
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120840879 77 + 123690457 agtg-cccaagatcccgaaactgccctccagcctgggcgaaagggcaagaccctgtctc--ataaataaataaactt--aaa---------
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     49349 80 + 192460366 agtgacccaggatcccgccgctgcactccagcctgggtgaaagggcaagactctgtctc--ataaataaataaatagataaa---------
i macFas5.chr2                 C 0 I 14
s papAnu2.chr2                     45471 80 - 187378091 cgtCAGCTGAggtcacacctctgcactccaacctgggtggcgaggtgagaccctgtctccaaaaagtaaatgaataa--aaa---------
i papAnu2.chr2                 C 0 I 8
s chlSab2.chr15                   397031 80 -  91754291 agtgacccaagatcccactgctacactccagcctgggtgaaagggcaagactctgtctc--ataaataaatatataaataaa---------
i chlSab2.chr15                C 0 I 10
s calJac3.chr17                   913038 76 -  74750902 agtcagctgagatcacgcctctgcactcc------ggtgacaaggtgagaccca-------aaaaataaatgaataa--agataaaatgaa
i calJac3.chr17                C 0 C 0
e rheMac3.chrUn_JH291127           13797 278 +    111706 I
e mm10.chr16                    65421901 961 -  98207768 I
e canFam3.chr33                 29056074 202 +  31377067 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=17234.000000
s hg38.chr3_KI270935v1_alt        104723 7 +    197351 ataaaag
s panTro4.chr3_GL389630_random     64876 7 +    103936 ataaaag
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120840956 7 + 123690457 ataaaag
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           14075 7 +    111706 aTAAAAG
i rheMac3.chrUn_JH291127       I 278 C 0
s macFas5.chr2                     49443 7 + 192460366 ataaaag
i macFas5.chr2                 I 14 C 0
s papAnu2.chr2                     45559 7 - 187378091 atgaaag
i papAnu2.chr2                 I 8 I 323
s chlSab2.chr15                   397121 7 -  91754291 ATAAAAG
i chlSab2.chr15                I 10 C 0
s calJac3.chr17                   913114 7 -  74750902 aTAAAAG
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65421901 961 -  98207768 I
e canFam3.chr33                 29056074 202 +  31377067 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=1694.000000
s hg38.chr3_KI270935v1_alt        104730 1 +    197351 t
s panTro4.chr3_GL389630_random     64883 1 +    103936 t
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120840963 1 + 123690457 t
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           14082 1 +    111706 T
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     49450 1 + 192460366 t
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     45889 1 - 187378091 t
i papAnu2.chr2                 I 323 C 0
s chlSab2.chr15                   397128 1 -  91754291 T
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   913121 1 -  74750902 C
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65421901 961 -  98207768 I
e canFam3.chr33                 29056074 202 +  31377067 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=294443.000000
s hg38.chr3_KI270935v1_alt        104731 111 +    197351 aaaaCTTGTTTATGATTTCAAAATTTTGAAATATTCCAAA-GACCAAGCAAAGTAAGAAGTGGGAAGAG--------GAGAAAGAAAAACTTTTCTATAATCCCACCTCTTAGATACAAC
s panTro4.chr3_GL389630_random     64884 111 +    103936 aaaaCTTGTTTATGATTTCAAAATTTTGAAATATTCCAAA-GACCAAGCAAAGTAAGAAGTGGGAAGAG--------GAGAAAGAAAATCTTTTCTATAATCCCACCTCTTAGATACAAC
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120840964 111 + 123690457 aaaaCTTGTTTATGATTTCAAAATTTTGAAAAATTCCAAA-GACCAAGCAAAGTAAGAAGTGGGAAGAG--------GAGAAAGAAAAACTTTTCTATAATCCCATCACTTAGACACAAC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           14083 111 +    111706 AAAACTTGTTTATGATTTCAAAATTTTGAAAAATTCCAAA-GACCAAGCAAAGTAAGAAGTGGGAAGAG--------GAGAAAGAAAACATGTCCTATAATCCCACCTCTTAGATACAAC
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     49451 111 + 192460366 aaaaCTTGTTTATGATTTCAAAATTTTGAAAAATTCCAAA-GACCAAGCAAAGTAAGAAGTGGGAAGAG--------GAGAAAGAAAACATGTCCTATAATCCCACCTCTTAGATACAAC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     45890 111 - 187378091 aaaacttgtttatgatttcaaaattttgaaaaattccaaa-GACCAAGCAAAGTAAGAagtgggaagag--------gagaaagaaaacatgtcCTATAATCCCACCTCTTAGATACAac
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   397129 111 -  91754291 AAAACTTGTTTATGATTTCAAAATTTTGAAAAATTCCAAA-GACTAAGCAAAGTAAGAAGTGGGAAGAG--------GAGAAAGAAAACATGTCCTATAATCCCACCTCTTAGATACAAC
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   913122 111 -  74750902 AAAACTTGCTTATGATTTCAAAATTTTTAAAAATTCCAAA-GACCAAGCAAAGTAAGAAGTAGGAAGAA--------GAGAAAGAAAAAGTTGTCTATAATCCCACCTCTTATACACAAG
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29056276 117 +  31377067 AAACCTTGCTTGTGAGTTCACGATTTTGAAAAATTCAAAAGGACCGAGAAAA--AAAAGGCAGAAAGAGAAGTGGGAGAGAAAGAAAAACATCTGTA-AGCCCCACTTCCTATACACAGC
i canFam3.chr33                I 202 I 42
e mm10.chr16                    65421901 961 -  98207768 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=4011.000000
s hg38.chr3_KI270935v1_alt        104842 2 +    197351 GA
s panTro4.chr3_GL389630_random     64995 2 +    103936 GA
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120841075 2 + 123690457 GA
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           14194 2 +    111706 GA
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     49562 2 + 192460366 GA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     46001 2 - 187378091 ga
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   397240 2 -  91754291 GA
i chlSab2.chr15                C 0 C 0
e mm10.chr16                    65421901 961 -  98207768 I
e canFam3.chr33                 29056393 42 +  31377067 I
e calJac3.chr17                   913233 0 -  74750902 C
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=423122.000000
s hg38.chr3_KI270935v1_alt        104844 271 +    197351 ----------tttattttttaaaattgagacagggtctcactc---tcacccaaactgcagtgcagtggtgcgaccatggctcactgcagcctccacctccca-gctccagtgatcctcccacctcagcctcctgaggagctgggaccacag----------------ctggctaatttttgtactttgttttgtaaaaaaggggctttaccatgttgagcaggttggtctcgatcttctgagctcaagcagtcctcctgcctcagactcgcaaagtgctgggattacagacatgagccac
s panTro4.chr3_GL389630_random     64997 272 +    103936 ----------tttattttttaaaattgagacagggtctcactc---tcacccaaactgcagtgcagtggtgcggccatggctcactgcagcctccacctcccaggctccagtgatcctcccacctcagcctcctgaggagctgggaccacag----------------ctggctaatttttgtacttttttttgtaaaaaaggggctttaccatgttgatcaggttggtctctatcttctcagctcaagcagtcctcctgcctcagactcgcaaagtgctgggattacagacatgagccac
i panTro4.chr3_GL389630_random C 0 I 2908
s nomLeu3.chr11                120841077 286 + 123690457 ----------tttatttttttaaattgagacagggtctcactc---tcacccaaactgcagtgcagtggtgcgaccatggcttactgcagcctccacctcccaggctccagtgatcctcccacctcagcctcctgaggagctgggaccacag--gtgcgccaccacacctgactgatttttgtacttttttttgtaaagaaggggctttaccatgttgaccaggttgatctcgatctcctgagctcaagcaatcctcctgcctcagactcgcaaagtgctgggattacaggcatgagccac
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           14196 285 +    111706 ----------tttattttttaaaatagagacagggtctcactc---tcacccaaactgcagtgcagtggtacgaccatggcacactgcagccttaacctcccagactccagtgatcctcccttcttagcctcctgaggagctgggaccacag--atgcgccaccacacctggctaatttttgtacttt-ttttgtaaagaaggggctttaccatgttgaccaggttggtctcgatctcctgagcccaagcaatcctcctgtctcagactcacaaagtgctgggattacaggcatgagcccc
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     49564 285 + 192460366 ----------tttattttttaaaatagagacagggtctcactc---tcacccaaactgcagtgcagtggtgcgaccatggcacactgcagccttaacctcccaggctccagtgatcctcccatcttagcctcctgaggagctgggaccacag--atgcgccaccacacctggctaatttttgtacttt-ttttgtaaagaaggggctttaccatgttgaccaggttggtctcgatctcctgagctcaagcaatcctcctgtctcagactcacaaagtgctgggattacaggcatgagcccc
i macFas5.chr2                 C 0 C 0
s chlSab2.chr15                   397242 285 -  91754291 ----------TTTATTTTTAAAAATAgagacagggtctcactc---tcactcaaactgcagtgcagtggtgcgaccatggctcactgcagcctcaacctcccaggctccagtgatcctcccgtcttagcctcctgaggagctgggaccacag--atgtgccaccacacctggctaatttttgtacttt-ttttgtaaagaaggggctttaccatgttgaccaggttggtctcgatctcctgagctcaagcaatcctcctgtctcagactcacaaagtgctgggattacaggcatgagcccc
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   913233 299 -  74750902 tttattttattttattattattttttgagatgaagtttcactcttgttgcccagcatggagtgcagtggcatgatcttgggtcacggcaacctctgcctctctgattcaagtggttctcctgcctcagccgcccgagttgctgggactacaggcatgcaccatcacatccagctaattttttttact--tttagtagagatggcgtttctccatgttggtcaggctggtctcaaactcttgacctcaggtgatccgcctgtcttggcctcccaaggtgctgagattaccggcgtgagccac
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65421901 961 -  98207768 I
e canFam3.chr33                 29056393  42 +  31377067 I
e papAnu2.chr2                     46003   0 - 187378091 C
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=26342.000000
s hg38.chr3_KI270935v1_alt        105115 21 +    197351 tgtgcccagccTTATATACAG
s panTro4.chr3_GL389630_random     68177 21 +    103936 tgtgcccagccTTATATACCT
i panTro4.chr3_GL389630_random I 2908 C 0
s nomLeu3.chr11                120841363 21 + 123690457 tgtgcccagccTTATATACAG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           14481 21 +    111706 tgtgcccagccTTATATACAG
i rheMac3.chrUn_JH291127       C 0 I 23
s macFas5.chr2                     49849 21 + 192460366 tgtgcccagccTTATATACAG
i macFas5.chr2                 C 0 I 6
s chlSab2.chr15                   397527 21 -  91754291 tgtgcccagccTTATATACAG
i chlSab2.chr15                C 0 I 23
s calJac3.chr17                   913532 10 -  74750902 tgcacctggc-----------
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65421901 961 -  98207768 I
e canFam3.chr33                 29056393 42 +  31377067 I
e papAnu2.chr2                     46003  0 - 187378091 C
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=8112.000000
s hg38.chr3_KI270935v1_alt        105136 16 +    197351 CTATTATTATTAATGT
s panTro4.chr3_GL389630_random     68198 16 +    103936 TTATTATTATTAGTGT
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120841384 16 + 123690457 CTATTATTATTAGTGT
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     49876 16 + 192460366 CTATTATTATTAGTGT
i macFas5.chr2                 I 6 I 1
e rheMac3.chrUn_JH291127           14502 23 +    111706 I
e mm10.chr16                    65421901 961 -  98207768 I
e canFam3.chr33                 29056393 42 +  31377067 I
e calJac3.chr17                   913542  0 -  74750902 C
e chlSab2.chr15                   397548 23 -  91754291 I
e papAnu2.chr2                     46003  0 - 187378091 C
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=14806.000000
s hg38.chr3_KI270935v1_alt        105152 87 +    197351 ATACTgtgtattcatttcaattcttaatctctccacttggatgttgatgaaatacatacctcacattcaacatttctttcttttttt
s panTro4.chr3_GL389630_random     68214 86 +    103936 ATACTGTGTATTCATTTCAAT-CTTTTTCtctccacttggatgttgatgaaatacatacctcacattcaacatttctttcttttttt
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120841400 87 + 123690457 ATACTgtgtattcaattcaattcttaatctctccacttggatgttgatgaaatacatacctcacatgcaacatttctttcttttctt
i nomLeu3.chr11                C 0 C 0
s calJac3.chr17                   913542 12 -  74750902 -------------------------------------------------------------------cAACAAtttatt--------
i calJac3.chr17                C 0 C 0
e rheMac3.chrUn_JH291127           14502 23 +    111706 I
e mm10.chr16                    65421901 961 -  98207768 I
e canFam3.chr33                 29056393 42 +  31377067 I
e chlSab2.chr15                   397548 23 -  91754291 I
e macFas5.chr2                     49892  1 + 192460366 I
e papAnu2.chr2                     46003  0 - 187378091 C
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=167288.000000
s hg38.chr3_KI270935v1_alt        105239 288 +    197351 ttttctttttgagatgga-aaggagcctggctctgtcacccaggctggagtgcagtggcgtgatctcagctcactgcaagctccacctcttgggttcacgtgattctcctgcctcagcctcctgagtatctgggactacagg--tgccaccaccatgctcggctaa-ttttttgaatttttagtagagacggagtttcaccgtgtcagccagcctggtctcaaactcctgacctcaagtgatccacccacctcggcctcccaaagtgctgggattccagttaatgagcact-g
s panTro4.chr3_GL389630_random     68300 288 +    103936 tttcctttttgagatgga-aaggagcctggctctgtcgcccaggctggagtgcagtggcgtgatctcagctcactgcaagctccgcctcttgggttcatgtgattctcctgcctcagcctcctgagtagctgggactacagg--tgccaccaccatgttcggctaa-ttttttgtatttttagtagagacggagtttcaccatgtcagccagcctggtctcaaactcctgacctcaagtgacccacccgcctcggcctcccaaagtgctgggattccagttaatgagcccc-g
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120841487 288 + 123690457 ttttttttttgagatgga-acggagtctcgctctgtcgcccaggctggagtgcagtggcacgatctcggctcactgcaacctccgcctcttgggttcacgtgattctcctgcctcagcctcctgagtagctgggactacagg--tgccgccaccatgctcagctaatttttttgtatttttagtagagacggagtttcaccgtgtcggccagcctggtctcaaactcctgacctcaagtgatccacccgcctcagcctcccaaagtgctgggattccaggc-atgagcacc-a
i nomLeu3.chr11                C 0 C 0
s papAnu2.chr2                     46003 287 - 187378091 tttattttttaaaatagagacagggtctcactc--tcactcaaactgcagtgcagtggtgcgaccatggctcactgcagcctcaacctcccaggctccagtgatcctcccgtcttagcctcctgaggagctgggaccacaga--tg-tgccaccacacttggctaatttttgtactttttttgtaaagaaggggctttaccatgttgaccaggttggtctcgatctcctgagctcaagcaatcctcctgtctctgactcacaaagtgctgggattacaggc-atgagcccctg
i papAnu2.chr2                 C 0 C 0
s calJac3.chr17                   913554 280 -  74750902 -----ttttcaaattgag-acagggcctcactctgtcaccca-actgcagtggagtggtgctgccacagctcactgcagcctcgacctcccatgcttgggtgatcctcccacctcagcctcccgagtagctgggaccacagagttg----caccacacctggctaacttttgtat-ttttctgtagagacgggactttcccatgttgcccaggtttgtctcaatctgctgagttcaaggaatcctcccgcctcagcctcccaaagtgctgggattacaggc-atgagccactg
i calJac3.chr17                C 0 C 0
e rheMac3.chrUn_JH291127           14502  23 +    111706 I
e mm10.chr16                    65421901 961 -  98207768 I
e canFam3.chr33                 29056393  42 +  31377067 I
e chlSab2.chr15                   397548  23 -  91754291 I
e macFas5.chr2                     49892   1 + 192460366 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=6780.000000
s hg38.chr3_KI270935v1_alt        105527 10 +    197351 ctcctggcct
s panTro4.chr3_GL389630_random     68588 10 +    103936 ctcctggcct
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120841775 10 + 123690457 ctcccggcct
i nomLeu3.chr11                C 0 C 0
s papAnu2.chr2                     46290 10 - 187378091 tgcccagcct
i papAnu2.chr2                 C 0 C 0
s calJac3.chr17                   913834 10 -  74750902 tgcccagccT
i calJac3.chr17                C 0 I 1651
s canFam3.chr33                 29056435 10 +  31377067 Ctcctacatt
i canFam3.chr33                I 42 C 0
e rheMac3.chrUn_JH291127           14502 23 +    111706 I
e mm10.chr16                    65421901 961 -  98207768 I
e chlSab2.chr15                   397548 23 -  91754291 I
e macFas5.chr2                     49892  1 + 192460366 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=-3563.000000
s hg38.chr3_KI270935v1_alt        105537  5 +    197351 c---------caca
s panTro4.chr3_GL389630_random     68598  5 +    103936 c---------cacg
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120841785  5 + 123690457 c---------caca
i nomLeu3.chr11                C 0 C 0
s papAnu2.chr2                     46300 14 - 187378091 tataTACAGATACA
i papAnu2.chr2                 C 0 I 18
s canFam3.chr33                 29056445  5 +  31377067 -------cggta--
i canFam3.chr33                C 0 C 0
e rheMac3.chrUn_JH291127           14502 23 +    111706 I
e mm10.chr16                    65421901 961 -  98207768 I
e calJac3.chr17                   913844 1651 -  74750902 I
e chlSab2.chr15                   397548 23 -  91754291 I
e macFas5.chr2                     49892  1 + 192460366 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=87256.000000
s hg38.chr3_KI270935v1_alt        105542 45 +    197351 tttctaaaatcgaagttctgatcttttcctctggacctgccccac
s panTro4.chr3_GL389630_random     68603 45 +    103936 tttctaaaatcgaagttctgatcttttcctctggacctgccccac
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120841790 45 + 123690457 tttctaaaatcaaagttctgatcttttcctctggacctgccccac
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           14525 45 +    111706 TTtctaaaatcgaagttctgatctcttcctctggacctgccccac
i rheMac3.chrUn_JH291127       I 23 C 0
s macFas5.chr2                     49893 45 + 192460366 TTtctaaaatcgaagttctgatctcttcctctggacctgccccac
i macFas5.chr2                 I 1 C 0
s papAnu2.chr2                     46332 45 - 187378091 tttctaaaattgaagTTCTGATCTCTTTGTCTGGACCTGCCCCAC
i papAnu2.chr2                 I 18 C 0
s chlSab2.chr15                   397571 45 -  91754291 TTtctaaaatcaaagttctgatctcttcgtctggacctgccccac
i chlSab2.chr15                I 23 C 0
s canFam3.chr33                 29056450 44 +  31377067 cgtccaaagccagagtcttaatctggatcccaag-ccggctctgc
i canFam3.chr33                C 0 C 0
e mm10.chr16                    65421901 961 -  98207768 I
e calJac3.chr17                   913844 1651 -  74750902 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=349614.000000
s hg38.chr3_KI270935v1_alt        105587 159 +    197351 ctgcatcttccccatctcagttaacgtcagttgcatccttcaggtgctcaggccgaaatcctcggcaccgt-ctttattcccc------tctcacattttgca---------ccaggaaattctgctggctctaaggccatcaaactgtgcccagaatgtggcccctcctcagca
s panTro4.chr3_GL389630_random     68648 160 +    103936 ctgcatcttccccatctcagttaacgtcaattgcatccttcagttgctcaagccgaaatcctcggcaccgttctttattcccc------tctcacattttgca---------ccaggaaattctgctggctctaaggccatctaactgtgcccagaatgtggcccctcctcagca
i panTro4.chr3_GL389630_random C 0 T 2788
s nomLeu3.chr11                120841835 160 + 123690457 ctgcatcttccccatctcagttaatgtcaattgcatccttcagttgctcaagctgaaatccgcggcaccgttctttattccta------tctcacattttgca---------ctgggaaattctgctggctctactgccatcaaactatgcccagaatgtggcccctcctcagca
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           14570 162 +    111706 ctgcatcttccccatctcagttaatgtcaattgcatccttcagttgctcaagccgaaatcctcggcactgttctttattcctc----tctctcacatgttgca---------ccaggaaattctgctggctctactgccatcaaactgtgcccagaatctggcccctcctcagca
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     49938 162 + 192460366 ctgcatcttccccatctcagttaatgtcaattgcatccttcagttgctcaagccgaaatcctcggcactgttctttattcctc----tctctcacatgttgca---------ccaggaaattctgctggctctactgccatcaaactgtgcccagaatctggcccctcctcagca
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     46377 162 - 187378091 CTGcatcttccccatctcagttAATGTCAATTGCATCCTTCAGTTGCTCAAGCCGAAATCCTCGGCACTGTTCTTTATTCCTC----TCTCTCACATGTTGCA---------CCAGGAAATTCTGCTGGCTCTACTGCCATCAAACTGTGCCCAGAATCTGGCCCCTCCTCAGCA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   397616 162 -  91754291 ctgcatcttccccatctcagttaatatcaattgcatccttcagttgctcaagccgaaatcctcggcactgttctttattcctc----tgtctcacatgttgca---------ccaggaaattctgctggctctactgccatcaaactgtgcccagaatctggcccctcctcagca
i chlSab2.chr15                C 0 C 0
s mm10.chr16                    65422862 145 -  98207768 ctgtgtctccctttgctcagttcattcctcttgcacccttcagccgctcctgccg-------ctgaaccattaatcattttcc----tttctcatattttata---------caagaaaattcaaccggtttctcttcc-tcgaacaatgccca---------ctctccccacga
i mm10.chr16                   I 961 I 8
s canFam3.chr33                 29056494 165 +  31377067 ctgtgtccgctccctcctgg-------cagccacgtccttcagttgctcaagccaaagttctcaaaaccagtcttcattcccctagttccctcactctttacacccagctcgccagaggattccactggctctcctgttgtcaaattct--ccagagtccgg-cctttctcagcc
i canFam3.chr33                C 0 C 0
e calJac3.chr17                   913844 1651 -  74750902 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=24454.000000
s hg38.chr3_KI270935v1_alt        105746 13 +    197351 tctccagtgctac
s nomLeu3.chr11                120841995 13 + 123690457 tctccagtgctac
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           14732 13 +    111706 tctccagtgctac
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     50100 13 + 192460366 tctccagtgctac
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     46539 13 - 187378091 TCTCCAGTGCTAC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   397778 13 -  91754291 tctccagtgctac
i chlSab2.chr15                C 0 C 0
s mm10.chr16                    65423015 13 -  98207768 tctcggcagccat
i mm10.chr16                   I 8 C 0
s canFam3.chr33                 29056659 13 +  31377067 tctccactgcccc
i canFam3.chr33                C 0 C 0
e calJac3.chr17                   913844 1651 -  74750902 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M
e panTro4.chr3_GL389630_random     68808 2788 +    103936 T

a score=199134.000000
s hg38.chr3_KI270935v1_alt        105759 92 +    197351 --caccgagatggtccacgatgccatcatctctcacctgcactacta-------caggtctccctgtttccagctcagcccccac-----ccc-agtctagtcccag
s panTro4.chr3_GL389630_random     66020 93 +    103936 --CACCGAGAtggtccacgatgccatcatctctcacctgcactacta-------caggtctccctgtttccagctcagcccccac-----ccccagtctagtcccag
i panTro4.chr3_GL389630_random T 2788 C 0
s nomLeu3.chr11                120842008 92 + 123690457 --caccgagatggtccacgatgccatcatctctcacctgcactacta-------caggtctccctgtttccagctctgcccccac-----ccc-agtctagtcccaa
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           14745 92 +    111706 --caccaagatggtccacgatgccgtcatctctcacctgcactacta-------cgggtcttcctgtttccagctctgcccccac-----ccc-agtctagtcccaa
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     50113 92 + 192460366 --caccaagatggtccacgatgccgtcatctctcacctgcactacta-------cgggtcttcctgtttccagctctgcccccac-----ccc-agtctagtcccaa
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     46552 92 - 187378091 --CACCAAGATGGTCCATGATGCCGTCATCTCTCACCTGCACTACTA-------CGGGTCTTCCTGTTTCcagctctgcccccac-----ccc-agtctAGTTCCAA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   397791 92 -  91754291 --caacaagatggtccacgatgccgtcatctctaacctgcactacta-------caggtcttcctgtttccagctctgcccccac-----ccc-agtctagttccaa
i chlSab2.chr15                C 0 C 0
s mm10.chr16                    65423028 93 -  98207768 --cactcaggtgggctgagatgctactgtctctcac---catgacta-------caga-ctccctgttggtacctgtgcccacctgaacaccc-gctctcatccccg
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29056672 97 +  31377067 ccctccaag-----cccagctgccaccgtccctctcctggattcctgataccctcgcggctctctctttccacctttgcccccACG----CCC-GGTGTCGTCCCAG
i canFam3.chr33                C 0 I 318
e calJac3.chr17                   913844 1651 -  74750902 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=244902.000000
s hg38.chr3_KI270935v1_alt        105851 124 +    197351 tgtgtcagccagggctgtctttttacaacataaggcagaccacaccacttctttgctcca-atcctcccatttcactcagaagaaaagc-----tccgacaacag-ctgcaaagcc-gtgcacgacctgcgc
s panTro4.chr3_GL389630_random     66113 124 +    103936 tgtgtcagccagggctgtctttttacaacgtaaggcagaccacaccacttctttgctcca-atcctcccatttcactcaggagaaaaac-----tctgacaacag-ctgcaaagcc-gtgcacgacctgcgc
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120842100 129 + 123690457 tgtgtcagcaagggctgtctttttacaacataaggcagaccacaccacttctttgctcca-atcctcccatttcactcagaagaaaagcagagttctgacaacgg-ttgcaaagcc-atgcacgacctgcgc
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           14837 129 +    111706 tatgtcagccagggctgtctttttacaacataaggcagaccacaccacttccttgctcca-atcctcccatttcacttagaagaaaagcagagttctgacaacgg-ctacaaagcc-atacagaacctgcac
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     50205 129 + 192460366 tatgtcagccagggctgtctttttacaacataaggcagaccacaccacttccttgctcca-atcctcccatttcacttagaagaaaagcagagttctgacaacgg-ctacaaagcc-atacagaacctgcgc
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     46644 129 - 187378091 TGTGTCAGCCAGGGCTGTCTTTTTACAACATAAGGCAGACCACACCACTTCTTTGCTCCA-ATCCTCCCATTTCACTCAGAAGAAAAGCAGAGTTCTGACAACGG-CTGCAAAGCC-ATACAGGACCTgcgc
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   397883 129 -  91754291 tgtgtcagccagggctgtctttttacaacataaggcagaccacaccacttctttgctcca-atcctcccatttcactcagaagaaaagtagagttctgacaacgg-ctgcaaagcc-atacaggacctgcgc
i chlSab2.chr15                C 0 C 0
s mm10.chr16                    65423121 122 -  98207768 gatgttagctggaaatttctcttcctagcatgtggcaggc----------ctgtgcttcatactcttccgtttcattcagaggaaaagccaagtttgggcaacagcctgtagaacaggtgaataatgggtac
i mm10.chr16                   C 0 C 0
e canFam3.chr33                 29056769 318 +  31377067 I
e calJac3.chr17                   913844 1651 -  74750902 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=392418.000000
s hg38.chr3_KI270935v1_alt        105975 223 +    197351 ccct-cccctgcctccttaatttgctgactgcaccgcagccaca---cggacgtctttcttgtcccttgaatgcgctgggcctgc-----tctt--gccttgggacctttctgtgcattgcttagtctgctcagaagccttctcctctacatatccact---tgtctaaaccctctacctccacct--tcatgccccttctcagcgaggtctacc----atgac-----catgctgcctacaaatt--ca
s panTro4.chr3_GL389630_random     66237 223 +    103936 ccct-cccctgcctccttaatttgctcactgaaccgcagccaca---cggacgtctttcttgtctcttgaatgcgctgggcctgc-----tctt--gccttgggacctttctgtgcatggcttagtctgctcagaaggcttctcctctacatatccact---tgtctaaaccctctacctccacct--tcatgccccttctctgtgaggtctacc----atgac-----catgctgcctacaaatt--ca
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120842229 223 + 123690457 ccct-cccctgcctcctgaatttgctcactgcactgcagccaca---cggacgtctttcttgtcccttaaatgcagtgggcctgc-----tctt--gccttgggccctttctgtgcgttgcttagtctgctcagaagccttctcctccacctatccact---tgtctaaaccctctacctccacct--tcacgccccttctcagcgagttctacc----atgac-----catgctgcctacaaatt--ca
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           14966 206 +    111706 ccct-cccctgcctccttaatt-------tgcaccacagccaca---ctgacgtctttcttgtcccttgaatgcactgggcctgc-----tctt--gccttgggacctttctgtgcattgctcagtctg---------ctcctcctctgcatatccact---tggct-aaccctctacctccacct--tcacgtcccttctcagcaaggtctgcc----atgac-----catgctgcttaaaaatt--ca
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     50334 206 + 192460366 ccct-cccctgcctccttaatt-------tgcaccacagccaca---ctgacgtctttcttgtcccttgaatgcactgggcctgc-----tctt--gccttgggacctttctgtgcattgctcagtctg---------ctcctcctctgcatatccact---tggct-aaccctctacctccacct--tcacgtcccttctcagcaaggtctgcc----atgac-----catgctgcttaaaaatt--ca
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     46773 217 - 187378091 ccct--ccctgcctccttaaTTTGCTCACTGCACCACAGCCAC-------ACGTCTTTCTTGTCCCTTGAATGCACTGGGCCTGC-----TCTT--GCCTTGGGACCTTTCTGTGCGTTGCTCAGTCTGCTCAGGAGCCTCCTCCTCTGCATATCCACT---TGGCT-AACCCTCTACCTCCACCT--TTACGTCCCTTCTCAGCGAGGTCTGCC----GTGAC-----CATGCTGCTTACAAATT--CA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   398012 214 -  91754291 ccct--ccctgcctccttaatt-------tgcaccacagccaca---ctgacatctttcttgtcccttgaatgcactgggcctgc-----tctt--gccttgggacctttctgtgcgttgctcagtctgctcaggagccttctcctctgcatatccact---tggct-aaccctctacctccacct--tcacgtcccttctcagcgaggtctgcc----atgac-----catgctgcttaaaaatt--ca
i chlSab2.chr15                C 0 C 0
s mm10.chr16                    65423243 242 -  98207768 tgctgtagccgcctctctagcctgctctttgta----agccgcaaagcaaggaacttggctgttcctgggatgtgccagatctgctcaggtcttgggccttggggcctttgtgtgtattgttctgtctgcttagaaggcctctcctccagacatctgctcaatgcct----cctccctctccacctccttctgcccctcctcaaTATACTCTACCCACAATGCCCTTTTCACGCTACATACCGACTGCCA
i mm10.chr16                   C 0 I 54
s canFam3.chr33                 29057087 176 +  31377067 CCCC-CCCCCGCCCCCTGAACTTGCTCACTTCACTGCAGGGACG---CTGACCTCTC------------GGCGCCCGGGAACCCA-----TCAG--GCCTCG---------CATGCACTGCTCAGTTTGCTCAGAGGCCTTCTCCTGCAGATACCGACC---TGACC-AAC-----AGCTCCACCT--CCTT-CCCCCTCTCGGTGGGGCCACCC------GAc-----ca-------------------
i canFam3.chr33                I 318 C 0
e calJac3.chr17                   913844 1651 -  74750902 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=89646.000000
s hg38.chr3_KI270935v1_alt        106198 33 +    197351 gtctccccttctgtactttgacgtactttatag
s panTro4.chr3_GL389630_random     66460 33 +    103936 gtctccccttctatactttgacgtactttatag
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120842452 33 + 123690457 gtctccccatctgtactttgatgtactttatag
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           15172 33 +    111706 gtctccccttctgtactttgatgtactttacag
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     50540 33 + 192460366 gtctccccttctgtactttgatgtactttacag
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     46990 33 - 187378091 GTCTCCCCTTCTGTACTTTGATGTACTTTACAG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   398226 33 -  91754291 gtctccccttctgtactttgatgtactttacag
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   915495 33 -  74750902 gcctccccttctgtattttgatgtacattatag
i calJac3.chr17                I 1651 C 0
s mm10.chr16                    65423539 33 -  98207768 gtagccctggctgtcctagaactcactctgtag
i mm10.chr16                   I 54 I 96
s canFam3.chr33                 29057263 27 +  31377067 ------cctcctctgctttgattttcttcttaa
i canFam3.chr33                C 0 C 0
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=90116.000000
s hg38.chr3_KI270935v1_alt        106231 36 +    197351 tgctgatcacaattgaacgtcatacatatttt----gttt
s panTro4.chr3_GL389630_random     66493 40 +    103936 tgctgatcacaattgaacatcatacatattttatttgttt
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120842485 40 + 123690457 cgctgatcacaattgaacatcatacgtattttattcattt
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           15205 40 +    111706 tgctgatcacagttgaacatcatacgtattttatttgttt
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     50573 40 + 192460366 tgctgatcacagttgaacatcatacgtattttatttgttt
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     47023 40 - 187378091 TGCTGATCACAATTGAACATCATacgtattttatttgttt
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   398259 40 -  91754291 tgctgatcacaattgaacatcatacatattttatttgttt
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   915528 26 -  74750902 cgctgatcacgatggaacatcataca--------------
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29057290 40 +  31377067 tgctgattccaacctaacataatacatattttatgtattt
i canFam3.chr33                C 0 C 0
e mm10.chr16                    65423572 96 -  98207768 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=886495.000000
s hg38.chr3_KI270935v1_alt        106267 333 +    197351 tctttattatctgagtcctccaactagaatgaaagattttgcccattatggtttccctagtgccaagaa------cagtacctggca---cataccaggggctcagt--------------------------aaacatt------------------------------------------------tgttagatgaatgaaGGAAACAAGGAGACAATGTTGAT-GCTGCTGTGAGCAAGGGGA----------GTCTGAACGTTTGACAGAT-CCCTTCCATTTCTGGAGTGGGGCA-GAATGAGTTTCATAAAGTAGCTCGGACAAAAATAATTCG----CTCAT------------------------------------------------------------------------CTT----GGCATATATGT-------------TGGGCAGCTGCCGCAGAAGAGAGACTGAGCTATGTGCCGTGGAGG---ATTCAAATCTGTCTCTTCTCC-CAGG
s panTro4.chr3_GL389630_random     66533 333 +    103936 tctttattatctgagtcctccaactagaatgaaagattttgcccattatggtttccctagtgccaagaa------cagtacctggca---cataccaggggctcagt--------------------------aaatatt------------------------------------------------tgttagatgaatgaaGGAAACAAGGAGACAATGTTGAT-GCTGCTGTGAGCAAGGGGA----------GTCTGAACGTTTGACGGAT-CCCTTCCATTTCTGGAGTGGGGCA-GAATGAGTTTCATAAAGTAGCTTGGACAAAAATAATTCG----CTCAT------------------------------------------------------------------------CTT----GGCATATATGT-------------TGGGCAGCTGCCGCAGAAGAGAGACTGAGCTATGTGCCATGGAGG---ATTCAAATCTGTCTCTTCTCC-CAGG
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120842525 333 + 123690457 tcattattatctgtgtcccccaactagaatgaaagattttgcccattatggttttcctagtgccaagaa------cagtacctggca---cataccaggggctcagt--------------------------aaacatt------------------------------------------------tgttagatgagtgaaGGAAACAAGGAGACAGTGTTGAT-ATTGCTGTGAGCAAGGGGA----------GTCTGAACGTTTGACGGAT-CCCTTCCATTTCTGGAGTGGGGCA-GAATGAGTTTCATAAAGTAGCTTGGACAAAAATAATTCG----CCCAT------------------------------------------------------------------------CTT----GGCATATATGT-------------TGAGCACCTGCCACAGAAGAGAGACTGAGCTATGTGCCGTGGAGG---ATTCAAATCTGTCTCTTCTCC-CAGG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           15245 333 +    111706 tctttattatctgtgtcccccaactagaatgaaaggttttgccctttacggtttccctagtgccaagaa------cagtacctggca---catgccgggggctcagt--------------------------aaacatt------------------------------------------------cgttagatgaatgaaGGAAACAAGGAGACAACGTTGAC-ATTGCTGTGAGCAAGGGGA----------GTGTGAGCGTTTGACGGAT-CCCTTCCATTTCTGGAGTGGGGCA-GAATGAGTTTCATAAAGTAGCTTGAACAAAAATAATTCG----CTCAT------------------------------------------------------------------------CTT----GGCAAATATGT-------------TGAGCACCTGCCTCAGAAGATAGACTGAGCTACGTGCCGTGGAGG---ATTCAAACCTGTCTCTTCTCC-CAGG
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     50613 333 + 192460366 tctttattatctgtgtcccccaactagaatgaaaggttttgccctttacggtttccctagtgccaagaa------cagtacctggca---catgccgggggctcagt--------------------------aaacatt------------------------------------------------cgttagatgaatgaaGGAAACAAGGAGACAACGTTGAC-ATTGCTGTGAGCAAGGGGA----------GTGTGAGCGTTTGACGGAT-CCCTTCCATTTCTGGAGTGGGGCA-GAATGAGTTTCATAAAGTAGCTTGGACAAAAATAATTCG----CTCAT------------------------------------------------------------------------CTT----GGCAAATATGT-------------TGAGCACCTGCCTCAGAAGATAGACTGAGCTACGTGCCGTGGAGG---ATTCAAACCTGTCTCTTCTCC-CAGG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     47063 333 - 187378091 tctttattatctgtGTCCCCCAACTAGAATGAAAGGTTTTGCCCTTTACGGTTTCCCTAGTGCcaagaa------cagtacctggca---catgccGGGGGCTCAGT--------------------------AAACATT------------------------------------------------CGTTAGATGAATGAAGGAAACAAGGAGACAACGTTGAC-ATTGCTGTGAGCAAGGGGA----------GTGTGAGCGTTTGACGGAT-CCCTTCCATTTCTGGAGTGAGGCA-GAATGAGTTTCATAAGGTAGCTTGGACAAAAATAATTCG----CTCAT------------------------------------------------------------------------CTT----GGCAAATATGT-------------TGAGCACCTGCCTCAGAAGATAGACTGAGCTACGTGCCGTGAAGG---ATTCAAACCTGTCTCTTCTCC-CAGG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   398299 333 -  91754291 tctttattatctgtgtcccccaactagaatgaaagattttgccctttacagtttccctagtgccaagaa------cagtacctggca---catgccgggggctcagt--------------------------aaacatt------------------------------------------------cgttagatgaatgaaGGAAACAAGGAGACAACGTTGAC-ATTGCTGTGAGCAAGGGGA----------GTGTGAGCGTTTGACGGAT-CCCTTCCATTTCTGGAGTGGGGCA-GAATGAGTTTCATAAGGTAGCTTGGACAAAAATAATTCG----CTCAT------------------------------------------------------------------------CTT----GGCAAATATGT-------------TGAGCACCTGCCTCAGAAGATAGACGGAGCTACGTACCGTGGAGG---ATTCAAACCTGTCTCTTCTCC-CAGG
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   915554 327 -  74750902 ----tattatctgagtccctcaactacaatgaaagattttgcccattatggtaaccctcgtgcccagaa------tggcacctggca---catatcaggggctcagg--------------------------aaacatt------------------------------------------------tgttggatgaatgaaAG-AACAAGGAGACAACATTGAC-ATTGCTGTGAGCAAGGGGA----------GTGTGAATGTTCGACTGGT-CCCTT-CATTTCTGGAGTAGGGCA-GAATGGGTTTCATAAAGTAGCTTGGACAAAAATAACCCA----CTCAT------------------------------------------------------------------------CTT----GGCACATCTGT-------------TGAGTACCTGCCGCAGAAGAGAGACTGAGCTGTGTGCCATGGAGG---ATTCAAATCTGTTTCTTCTCC-CAGG
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65423668 511 -  98207768 TCTTTATCACCAGAGTCCTTCAACTATAATCATATCCTTTGCCTATTGTGATGTCCCTAGCTCCTTGCACATAGTCAGTACTTTGTGTgttgtggttgtagctcagtcttggagcaatttctcagcaggaacaaaacactggttttaattcccggcattgaaataaTGACCAAGCTGCTCCATGAGTATGTTAAGTAGTTAATAAAAACAA-CAGATGGCTCTGTG-GTTGCTCTGAATAAGGGGGGGGGGTGTTTGTGTGTGCTCTCAGCTGACGTCCTTGTGTTCTCGGTGTGGGGCAGGAATGAGCTTCATAGAGTGGTT-----GCAAATGATTCAAACTCTTATGATGGTGTGTTTGGTGTGGTATTTGgtgtgtgtgtttggtgtgtgtgtttggtgtggtatttggtgtgtgtgttt----ggtgtgtgtgtTTGGTGTGGTTGGTGAGTGCCTTAAACAGAAGAGAGACCATGCTGTATGCTGAAGAAC---ATTCAAAGATGTCTcaggtcc-tggg
i mm10.chr16                   I 96 I 927
s canFam3.chr33                 29057330 337 +  31377067 gtcttattatccgtctccctcaactggaatgtgagcgttcgctcactccggc-tccctagcgtcccgca------cagtgcctgccg---catgaaaggtgctcggt--------------------------aaatatt------------------------------------------------agttaaatgagtggaGGAAAC---CAGACAACTTCGACTATTGCTGTGCATAAGGGCA----------GTACGTGTATTCAGCTGATCCCCTCCCCCTTGCATGATGAGGCA-GGGTGAGGTTTATAAAGTAGGTTGGACAAAAATAATTCA----ATCAT------------------------------------------------------------------------CCTTCCCAGCATTTTTGC-------------CAGGC-CCTGCAACAGAAGAGAGGC-ATGGTGTGTGCCATGGGGGGTTATTCGCTGATGTCTCTTCCCCACAGG
i canFam3.chr33                C 0 C 0
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=1219719.000000
s hg38.chr3_KI270935v1_alt        106600 552 +    197351 GATTGAAGTTA-------------GACACGTACAG-CAATAATAAGTtgaaagaacttatttacaccgcatatagcaacaacaggatgcccttaatatatagagaactcttacag----cgcaag---------------------------------aaaataaaaaggcaaacataccagtagaaaaatgg---gtaaatg--------------------------------------------------------------gcaacaggt------------------------------------------------aattcacaaaagaagaaatacaaatgtcctctcctcccgccaccacccc----cc--atgaaaaagaacgtgtgacttcagta-gcaaaaacaggtccattaatacagtgagatattgcttattgtatgtct-gt--------actga--------------tctatact--gggtgctgggcaaacgggcattcttaaacactcctagtagggaagaaattggtacaacctttccggaggacaatttaactgatttatttaaagcccgaaaaatgtacatacctttaactcagcagtttcgtt---actgatttatcttaaggaagtaatttagaatctgtgccta-----------------------------actgtttacaataactCA--------------------TAGATGAAAAAGGCAAAACAAAACACAAGTAACCTCAAATCTCCCCATGTAACAGTTTGCTTAA
s panTro4.chr3_GL389630_random     66866 552 +    103936 GATTGAAGTTA-------------GACACGTACAG-CAATAATAAGTtgaaagaacttatttacactgcatatagcaacaacaggatgcccttaatatatagagaactcttacag----cgcaag---------------------------------aaaataaaaaggcaaacataccagtagaaaaatgg---gtaaatg--------------------------------------------------------------gcaacaggt------------------------------------------------aattcacaaaagaagaaatacaaatgtcctctcctcctgccaccacccc----cc--atgaaaaagaacgtgtgacttcagta-gcaaaaacaggtccattaatacagtgagatattgcttattgtatgtct-gt--------actga--------------tctatact--gggtgctgggcaaatgggcattcttaaacactcctagtagggaagaaattggtacaatctttccggaggacaatttaactgatttatttaaagcccgaaaaatgtacatacctttaactcagcagtttcgtt---actgatttatcttaaggaagtaatTTAGAATCTGTGCCTA-----------------------------ACTGTTTACAATAACTCA--------------------TAGATGAAAAAGGCAAAACAAAACACAAGTAACCTCAAATCTTCCCATGTAACAGTTTGCTTAA
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120842858 546 + 123690457 GATTGAAGTTA-------------GACATGTACAG-CAATAATAAGTtgaaagaacttatttacaccgcacatagcgacaacaggatgcccttaatatacagagaactcttacag----agcaag---------------------------------aaaa-aaaaaggcaaacacaccagtagaaaaatgg---ataaatg--------------------------------------------------------------gcaacaggt------------------------------------------------aattcacaaaagaagaaatacaaatgtcctctcctcccaccaccacccc----cc--atgaaaaagaacgtgtgacttcagta-gcaaaaacaggcccattaatacagtgagatattgcttattgtatgtct-gt--------actga--------------tctatgct--gggcgctgggcaaatgggcattcttaaacactcctagtaggaaagaaattggtacagcctttccggaggacaatttaactgatttatttaaagcccgaaaaatgtacatacttttaactcagcagtttcgtt---actgatttatc-taaggaagtaattaagaatctgtgc---------------------------------CTGTTTATAACAACTAA--------------------TAGATGAAAAAGACATAACAAAACACAAATAACCTCAAATCTCCCCAAGTAACAGTTTGCTTAA
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           15578 558 +    111706 GATCGAAGTTA-------------GACATGTACAG-AAATAataaattgaaagaacttatttataccacatatagcaacaacaggatgcacttaa-atatagagaactcttacag----agcaag--------------------------aaaaaaaaaaaaaaaaaggcgaacacaccagtagaaaaatgg---ataaagg--------------------------------------------------------------gcaacaggt------------------------------------------------agttcacaaaagaggaaatacaaatgtcctctcctcccaccaccactcc----cgcaatgaaaaagaacgtgtgatttcacta-acaaaaacaggtccattaatacagtgagaaattgcttgttgcatgtct-gt--------actga--------------tccgtact--gggtgctgggcaaacgggcgttctcaaacactcctaggaggaaagaaattggtacagcctttctggaggacaatttaactgatttatttaaagcctgaaaaatgtacacac-tttaactcagcagtttcgtg---actgatttatcttaaggaagtaattaagaatCCGTGCCTA-----------------------------ATT-TTTATAACAACTAA--------------------TAGATGAAAAAGACAAAATGAAACACAAATAACCTAAAATCTCCCTATGTAACAGTTTGCTTAC
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     50946 556 + 192460366 GATCGAAGTTA-------------GACATGTACAG-AAATAataaattgaaagaacttatttataccgcatatagcaacaacaggatgcacttaa-atatagagaactcttacag----agcaag----------------------------aaaaaaaaaaaaaaaggcgaacacaccagtagaaaaatgg---ataaagg--------------------------------------------------------------gcaacaggt------------------------------------------------agttcacaaaagaagaaatacaaatgtccTCTCCTCCCACCACCACCCC----CGCAATGAAAAAGAACGTGTGATTTCACTA-ACAAAAACAGGTCCATTAATACAGTGAGAAATTGCTTGTTGCATGTCT-GT--------ACTGA--------------TCCGTACT--gggtgctgggcaaacgggcgttctcaaacactcctaggaggaaagaaattggtacagcctttctggaggacaatttaactgatttatttaaagcctgaaaaatgtacacac-tttaactcagcagtttcgtg---actgatttatcttaaggaagtaattaagaatCCGTGCCTA-----------------------------ATT-TTTATAACAACTAA--------------------TAGATGAAAAAGACAAAATGAAACACAAATAACCTAAAATCTCCCTATGTAACAGTTTGCTTAC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     47396 579 - 187378091 GATTGAAGTTA-------------GACATGTACAG-AAATAATACATTGAAAGAACTTATTTATACCGCATATAGCAACAACGGGATGCACTTAA-ATATAGAGAACTCTtacag----agtaag-----------------------------aaaaaaaaaaaaaaggcaaacacaCCAGTGGAAAAATGG---ATAAAGG--------------------------------------------------------------GCAACAGgt------------------------------------------------aattcacaaaagaagaaatacaaatgtccTCTCCTCCCGCCACCGCCTCCCCACCCAGTGAAAAAGAACGTGTGATTTCACTA-ACAAAAACAGGTCCATTAATACAGTGAGAAATTGCTTATTGTATGTCT-GT--------ACTGA--------------TCCGTACC--GGGTGCTGGGCAAACGGGCATTCTCAAACACTCCTAGGAGGAAAGAAATTGGTACAGCCTTTCTGGAGGACAATTTAACTGATTTATTTAAAGCCTGAAAAATGTACCTAC-TGTAACTCAGCAGTTTCGTG---ACTGATTTATcttaaggaagtaattaagaaTCTGTGCCTA-----------------------------ATT-TTTATAACAATAGATGAAATCGTTTTCATCAATTtagatgaaaaagacaaaatgaaacacaaataaCCTAAAATCTCCCCATGTAACAGTTTGCTTAA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   398632 559 -  91754291 GATTGAAGTTA-------------GACATGTACAG-AAATAATAAATTGAAAGAACTTATTTATACCGCATATAGCAACAACGGGATGCActtaa-atatagagaactcttacag----agtaaga-------------------------aaaaaaaaaaaaaaaaaggcaaaaacaccagtggaaaaatgg---ataaagg--------------------------------------------------------------gcaacaggt------------------------------------------------aattcacaaaaggaaaggggcaaatgtccTCTCCTCCCGCCACCACCCC----CCCAGTGAAAAAGAACGTGTGATTTCACTA-ACAAAAACAGGTCCATTAATACAGTGAGAAATTGCTTGTTGCTTGTCT-GT--------ACTGA--------------TCCGTACT--gggtgctgggcaaacgggcattctcaaacactcctaggaggaaagaaattggcacagcctctctggaggacaatttaaccgatttatttaaagcctgaaaaatgtacatac-tttaactcagcagtttcgtg---actgatttatcttaaggaagtaattaagaatctgtgcCTA-----------------------------ATT-TTTATAACAACTAA--------------------TAGATGAAAAAGACAAAATGAAACACAAATAACCTAAAATCTCCCCATGTAACAGTTTGCTTAA
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   915881 576 -  74750902 GATTAAAGTTA-------------GAC--GTGCAG-AAATAACAAACTGAAAG---TGACTTACACCTCACAGAGCAACAACAGGATGCCTTTAATATACAGAGAACTCTTAGAGCAACAACAGGatgcctttactatacagagaactcttagagagcagggaaaaaaggcagacacaccagcagaaaaatga---ataaatt--------------------------------------------------------------gcagcaggc------------------------------------------------agttcacaaaagaagaaacacaagcgtcctctcctcccgccaccacccc----acc-gtgagaaagaaggtttgacttc---a-gcagaaacaggtcaattaatacagtgagatagtgcttaccgtgcgtctcgt--------accga--------------tctatgct--gggtgctgggcgaaggggca-tctcagacactcctagtgggaatgaaattggtgcagcctttctggaggacaatttaactcattcatttaaagcctgaaaaatgtacatacctttaattcagcagtttcatt---agtggtttaccttaaggaa-taattaAGCATCTGTGCCTG---------------------------------TTTATAACAACCAA--------------------TAGATGAAAAAGACAAAACGAAACACAAATAACCTAAAATCTCCC-GCGTGACACTTTGGTTAA
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29057667 683 +  31377067 GGCTAAACTTAGTAGGGGAGGGTGGACATATACAGAaaaaaacaaaccaaaagaacttatttacaccatatatggcaaaaccagaatctccttaatatacaaagagttcttacaa----agcaat--------------------------------------aaaaagggaaatatgccagaggaaagtaggactataaatgttttccaaaagcaggaatataTCTTCCTTTTTGGGTAAGAGCTGTGTTCAGATGAACCCCACACCACAGATTTgagaaataaaagatgtgcaaggcaaaaaaacaaaacaaaacaaaacaaaacacaaaagcaggaatataaatgtttt-----------------------cc--atgaaaaagaaa--------ccagtaggaaaaaaaaagtaaattgatacagtgaggtatt-ctaactatgtgcca-ataggtaaggacttataaaaattataatttccatgatgagggtgtggagggaaaggatagtcttaaacactgttggtgtgaatgaaatcggcacagcctttcgggaggaccatttgac-----tatctaaagacttaaaaatgtgcatccctttaactgagcaatttcattccaaagggtttatcttaaagaaataattaggaatctgtgcaaagaccaataaatcaatgtattcattacagaactgtttataacagctaa--------------------taaaggaaaa----aagacaaaaca-----------aaatgtcTCAGTGTAGTCATTTGGTTAA
i canFam3.chr33                C 0 I 36
e mm10.chr16                    65424179 927 -  98207768 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=253503.000000
s hg38.chr3_KI270935v1_alt        107152 132 +    197351 ACACTATAGCGTTATTTTACGCAAGCTACAGAAGCATTGTTGAAACATATATTTATTAGGACAGAAAAAAATTCATGAAATGTTATTTTATCT--TCTT-TTTTCTTAAAATGGAACTTAAAAAA-AATTTTTTTA
s panTro4.chr3_GL389630_random     67418 134 +    103936 ACACTATAGTGTTATTTTACGCAAGCTACAGAAGCATTGTTGAAACATATATTTATTAGGACAGAAAAAAGTTCATGAAATGTTATTTTATCTTCTCTT-TTTTCTTAAAATGGAACTTAAAAAA-ATTTTTTTTA
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120843404 134 + 123690457 ACACTGTAGTGTTATTTTACGCAAGCTACAGAAGCGTTGTTGAAACATATATTTATTAGGATGGAAAAAAGTTCATGAAatattattttatcttctcttattttcttaAAATCAAACTT-TAAAA-TTTTTTTTTA
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           16136 130 +    111706 ACACTATAGTGTTATTTTTTGCAAGCTACAGAAGCGTTGTTGAAACATG----TATTAAGATGGAAAAAAGTTCATGAAATATTATTTTATCTTCTCTTATTTTCTAAAAGTGGAACTAAAAAAA--TTTTTTTTA
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     51502 130 + 192460366 ACACTATAGTGTTATTTTTTGCAAGCTACAGAAGCGTTGTTGAAACATG----TATTAAGATGGAAAAAAGTTCATGAAATATTATTTTATCTTCTCTTATTTTCTAAAAGTGGAACTAAAAAAA--ATTTTTTTA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     47975 135 - 187378091 ACACTATAGTGTTATTTTTTGTAAGCTACAGAAGCGTTGTtgaaacatgtatttattaagaTGGAAAAAAgttcatgaaatattattttatcttctcttattttctaaaaatggaactaaaaaaa-ttttttttta
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   399191 136 -  91754291 ACACTATAGTGTTATTTTTTGTAAGCTACAGAAGCGTTGTTTAAACATGTATTTATTAAGATGGAAAAAAGTTCATGAAATATTATTTTATCTTCTCTTATTTTCTAAAAATGGAACTAAAAAAATTTTTTTTTTA
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   916457 128 -  74750902 ACATTGTAGTGTTACTTTGCATAATCT--AGAAGTTTTGTTGAAACGTA--TTTATTAAGATGGAGAGAAGTTCATGAAATATTATTTTATCTTCTCTTATTTTCTTAAAACGGAACTT--AACA--TTTTTTTAA
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65424179 927 -  98207768 I
e canFam3.chr33                 29058350  36 +  31377067 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=507251.000000
s hg38.chr3_KI270935v1_alt        107284 205 +    197351 ACTCCAACCTACCTTTTACACCATCTGCAGAGCTTTCCTCTCCCAAATCAAAGCTACTCCTGTTCCTACCTCCAGGATGGAATCCCCACCTTCGTATGCAAGGGTcttcatgatatggcctcagccaactatcttagctccaggt--cacggccccatcttccatatcctatgctgcttgcacaggaagcagctcgctaaccccagg-
s panTro4.chr3_GL389630_random     67552 205 +    103936 ACTCCAACCTACCTTTTACACCATCTGCAGAGCTTTCCTCTCCCAAATCAAAGCTACTCCTGTTCCTACCTCCAGGATGGAATCCCCACCTTCGTATGCAAGGGTcttcatgatatggcctcagccaactatcttagctccaggt--cacggccccatcttccatatcctatgctgcttgcacaggaagcagctcgctaaccccagg-
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120843538 205 + 123690457 ACTCCAAGCTACCTTTTACACCATCTCCAGAGCTTTCCTCTCCCAAATCAAAGCCACTCCTGTTCCTATCTCCAGGATGAAACCCCCACCTTGGTATGCAAGGGTcttcatgatatggcctcagccaactatcttagctccaggt--cgccaccccatcttccatatcctatgctccttgcacaggaagcagctcgctaaccccagg-
i nomLeu3.chr11                C 0 I 315
s rheMac3.chrUn_JH291127           16266 204 +    111706 ACTCCAAGCTACCTTTTATACCATCT-CAGAGCCTTCCTCTCCCAAATCAAAGCTACTCCTGTTCCTACCTCCGGGATGAAATCCCCACCTTGGTATGCAAGGGTcttcatgatacggcctcagccaactaccttagctccaggt--cgtggccccatcttccatatcctgtgctccttgcacagggagcagctcgctaaccccagg-
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     51632 204 + 192460366 ACTCCAAGCTACCTTTTATACCATCT-CAGAGCCTTCCTCTCCCAAATCAAAGCTACTCCTGTTCCTACCTCCGGGATGAAATCCCCACCTTGGTATGCAAGGGTcttcatgatacggcctcagccaactaccttagctccaggt--cgcggccccatcttccatatcctgtgctccttgcacagggagcagcttgctaaccccagg-
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     48110 201 - 187378091 actcta----accTTTTATACCATCTCCAGAGCCTTCCTCTCCCAAATCAAAGCTACTCCTATTCCTACCTCCGGGATGAAATCCCCACCTCGGTATGCAAGGGTCTTCATGATACGGCCTCAGCCAACTACCTTAGCTCCAGGT--CGCGGCCCCATCTTCCATATCCTGTGCTCCTTGCACAGAGAGCAGCTCGCTAACCCCAGG-
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   399327 201 -  91754291 ACTCTA----ACCTTTTATACCATCTCCAGAGCTTTCCTCTCCCAAATCAAAGCTACTCCTATTCCTACCTCCGGGATGAAATCCCCACCTTGGTATGCAAGGGTCTTCATGATACGGCCTCAGCCAACTACCTTAGCTCCAGGT--CGCGGCCCCATCTTCCATATCCTGTGCTCCTTGCACAGGGAGCAGCTCGCTAACCCCAGG-
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   916585 207 -  74750902 ACTCCAAGCTGCCTTTTACACTATCTCTAGAGCTTTTCTCTCCCAAATCAAAGCTACTCCTCTTCCCACCTCCAGGATGAAATCCCCACCTTGGTGTGCAAGGGCcttcaagatttggcctcagccaacttccttagttccaggttctgtgaccccatcttccagattctatgctccttccacagggggcacctcgccaaccccagg-
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29058386 192 +  31377067 gtTCCCAAGTACCTTTCACACTGTCTTTAAGGGCTCCCTTTCC-----AAAAGCTAGTCCTGTTCCTACCAAAGGAACAAAACTCCCAGCCTTGTATATCAGGGTCCTCGTGATCAGGGTT-----------CCCAGCTCTGTGTCTCGTAGACCCGCCTGCTATGTCTtatgttacttccacaggtaacttctcactacttccctgt
i canFam3.chr33                I 36 C 0
e mm10.chr16                    65424179 927 -  98207768 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=966239.000000
s hg38.chr3_KI270935v1_alt        107489 382 +    197351 cacacctgctttcatctggagcgtctgcccatcatgattcctccccc--------------------tggtcccttcacctggaaaactcctattcattcctcaaagcccagttcagatggcacctctccatga----cttcatcagattccctacagaggtgctgattttctggtct-----cttgtgtttctgttgtaacacttaacatgctgtattataatgtgcttattttatttacaagtttgttacattgtacgtgctcgaggacaagcagccggtagtattcacctctgtcatcacagaagctggcgtggagccctccacat-gagggcactgatgtgtttgctgagtgactgGGAC-AATGGTGGGCCACGTGA-------GCCCCGAAACTT--TCAG-----------TGGGCTCTGAAAGTT
s panTro4.chr3_GL389630_random     67757 387 +    103936 cacacctgctttcatctggagtgtctgcccatcatgattcctccccc--------------------tggtcccttcacctggaaaactcctattcattcctcaaagcccagttcagatggcacctctccatga----cttcatcagattccctacagaggtgctgattttctggtctctttacttgtgtttctattgtaacacttaacatgctgtattataatgtgcttattttatttacaagtttgttacattgtacgtgctcgaggacaagcagccggtggtattcacctctgtcatcacagaagctggcgtggagccctccacat-gagggcactgatgtgtttgctgagtgactgGGAC-AATGGTGGGCCACGTGA-------GCCCCGAAACTT--TCAG-----------TGGGCTCTGAAagtt
i panTro4.chr3_GL389630_random C 0 I 3019
s nomLeu3.chr11                120844058 393 + 123690457 cacacctgctttcatgtggagtgtctgcacatcatgattcttccccc---------------------ggtcccttcacccggaaaactcctattcattcctgaaagcccagttcagatggcacctctccatga----cttcgtcagattccctgcaggggtgctgattttctggtctctttacatgtgtttctgttgtaacacttaacatgctgtactataatgtgcttattttatttacaagtttgtTACATTGTACGTGCTCTAGGACAAGCAG-----------CACCTCTGTCATCACAGAAGCTAGCGTGGAGCCCTCCACAT-CAGGGCAACGATGTGTTTGCTGAGTGACTGGGAC-CATGGTGGGCCACGTGAGCAGATGGCCCCGAAACTT--TCAGCTAACTTTTTCTTAGCTCTGAAAGTT
i nomLeu3.chr11                I 315 C 0
s rheMac3.chrUn_JH291127           16470 392 +    111706 cacacctgcttccatctggagtgtctgcacatcatgattcttcccct---------------------ggtccctttgcctggaaaact-ctattcattcctcaaagcccagttcaggtggcacctctccatga----ctttgtcagattccctacagaggtgctgattttctggtctctttacttgtgtttctgttataacacttaacatgctgtacaataatgtgcttattttatttacaagtttgttacattgtaggtgctctaggacaagcagtcagtagtattcacctctgtcatcacagaagctagcatggagccctccacct-gagggcactgatgtgtttgcagagtgactgGGAC-AATGGTGGGCCACATAAGCAGATGGCCCTGAAACTT--TCAG-----------TGGGCTCTGAAAGTT
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     51836 393 + 192460366 cacatctgcttccatctggagtgtctgcacatcatgattcttcccct---------------------ggtccctttgcctggaaaactcctattcattcctcaaagcccagttcaggtggcacctctccatga----cttcgtcagattccctacagaggtgctgattttctggtctctttacttgtgtttctgttataacacttaacatgctgtacaataatgtgcttattttatttacaagtttgttacattgtaggtgctctaggacaagcagtcagtagtattcacctctgtcatcacagaagctagcaTGGAGCCCTCCACCT-GAGGGCACTGATGTGTTTGCAGAGTGACTGGGAC-AATGGTGGGCCACATAAGCAGATGGCCCTGAAACTT--TCAG-----------TGGGCTCTGAAAGTT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     48311 393 - 187378091 CACACCTGCTTCCATCTGGAGTGTCTGCACATCATGATTCTTCCCCT---------------------GGTCCCTTTGCCTGGAAAACTCCTATTCATTCCTCAAAGCCCAGTTCAGGTGGCACCTCTCCATGA----CTTCGTCAGATTCCCTACAGAGGTGCTGATTTTCTGGTCTCTTTACTTGTGTTTCTGTTATAACACTTAACATGCTGTACAATaatgtgcttattttatttacaagTTTGTTACATTGTAGGTGCTCTAGGACAAGCAGTCAGTAGTATTCACCTCTGTCATCACAGAAGCTAGCATGGAGCCCTCCACCT-GAGGGCACTGATGCGTTTGCAGAGTGACTGGGAC-AATGGTGGGCCACATAAGCAGATGGCCCTGAAACTT--TCAG-----------TGGGCTCTGAAAGTT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   399528 393 -  91754291 CACACCTGCTTCCATCTGGAGTGTCTGCACATCATGATtcttcccct---------------------ggtccctttgcctggaaaactcctattcattcctcaaagcccagttcaggtggcacctctccatga----cttcgtcagattccctacagaggtgctgattttctggtctctttacttgtgtttctgttataacacataacatgctgtactataatgtgcttattttatttacaagtttgttacattttaggtgctctaggacaagcagccgatagtattcacctctgtcatcacagaagctagcaTGGAGCCCTCCACCT-GAGGGCACTGATGTGTTTGCAGAGTGACTGGGAC-AATGGTGGGCCACATAAGCAGATGGCCCTGAAACTT--TCAG-----------TGGGCTCTGAAAGTT
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   916792 375 -  74750902 cacacctgctttcatttggagtttctgcccatcgtgattcgtccccc--------------------ttgtccctccccttggaaaactcctattcattcctcaaagcccagttcagatggcacctctccatga----ctttgtcagattcccTGCAGAGGCACTGATTTCCTGATCTCTTTACTTGTGTTTC-----TAACTCGGAACATGCTGTATTATAAAGTGCTTATTTTATTTACAAGTTTGTTA-------------CTGGGACAAGCAGCCGCCAGTCTTCGC--CAGTCTTCACAGAAGCTAGCATGGAGCCCTCCACAT-GAGGGCGCTGATGTGTTGGCTGAGTGACCGAGACGAATGGCGGGCCACGTGAGCAGGTGGCCCCAAAACTT--GCAG-----------TGAGCTCTGAAAGTT
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29058578 409 +  31377067 catacctgctttgatccagagagtttgtacatcatgactcttgcccccaggatgctctcccgctctctggtccctccatctggaaaacttctgttcatgcttagaggcccagttcattcggtgcctccttgtggtggctttcctcaaattccctgaggagggtctagtttcatcgtcccttta----tgtttctgttatgacacttaacatactacat-----cctgcttcattcgcttatgagttggttaagtcatctgtgcttcaggacaggtgccatgcggtactcctccctgtagccacagaacctagtgcagagctctgtacctggaggatactcagctgttcgctgcataactgaGAG----GATGGGCCACGTGAGCAGGTGACCATGAAATATGGGCAC-----------TGGGCTCTGAAAGGT
i canFam3.chr33                C 0 C 0
e mm10.chr16                    65424179 927 -  98207768 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=193299.000000
s hg38.chr3_KI270935v1_alt        107871 94 +    197351 AAGAAAAGGGCATTCAGTACTGAAATCACACAAAacgtaaatttaatgatataattgttccgaagctgctctataatttggcatgaatggagag
s nomLeu3.chr11                120844451 91 + 123690457 AAGAAAATGGCATTTGGTATTGAAGTCACACAAAATGTAAatttaatgatat---tgttctgaagctgcactataattaggcatgaatggagag
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           16862 94 +    111706 AAGAAAATGGCATTCGGTATTGAAGTCACACAAAATGTAAatttaatgatataattgttctgaagctgcactataattaggcatgaatggagag
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     52229 94 + 192460366 AAGAAAATGGCATTCGGTATTGAAGTCACACAAAATGTAAatttaatgatataattgttctgaagctgcactataattaggcatgaatggagag
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     48704 94 - 187378091 AAGAAAATGGCATTCGGTATTGAAGtcacaaaaaatgtaaatttaatgaTATAATTGTTCTGAAGCTGCACTACAATTAGGCATGAATGGAGAG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   399921 94 -  91754291 AAGAAAATGGCATTCGGTATTGAAGTCACACAAAATGTAAatttaatgatatgattgttctgaagctgcattataattaggcatgaatggagag
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   917167 94 -  74750902 AAGAAAATGGCAGTTGGTATTGAAGTCAAACAAAATGTAAATGTAATGATATAATTGTTATGAAGCTGCACTATAATTAGGGATGGATGAAGAG
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29058987 88 +  31377067 GAGAAAATAGTATTTAATATTGAAATCTAACAAAATATTAATTTAACGATATCATT------AAGCTACACTATAGTTAGGCATGAATGGATTG
i canFam3.chr33                C 0 I 416
e mm10.chr16                    65424179 927 -  98207768 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M
e panTro4.chr3_GL389630_random     68144 3019 +    103936 I

a score=55271.000000
s hg38.chr3_KI270935v1_alt        107965 31 +    197351 cagtttacaaaaatgacAA---CACCACTGTTAT
s nomLeu3.chr11                120844542 34 + 123690457 cagtttacaaaagtgacaataaCACCACTGTTAT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           16956 34 +    111706 cagttgacaaaaatgacaacagcaccactgttat
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     52323 34 + 192460366 cagttgacaaaaatgacAACAGCACCACTGTTAT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     48798 34 - 187378091 CAGTTGACAAAAATGACAATAACACCACTGTTAT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   400015 34 -  91754291 cagttgacaaaaatgacaataaCACCACTGTTAT
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   917261 34 -  74750902 CAGTTTACGAAAGTGACAATAACACCACTGTTAC
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65424179 927 -  98207768 I
e canFam3.chr33                 29059075 416 +  31377067 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M
e panTro4.chr3_GL389630_random     68144 3019 +    103936 I

a score=92227.000000
s hg38.chr3_KI270935v1_alt        107996 48 +    197351 ATAAACCCAATTCTTAAATAGGTTTTCTTCTCTTGCTTTGTATTTCCT
s nomLeu3.chr11                120844576 48 + 123690457 ATAAACCCAGTTCTTAAATAGGTTTTCTCCTCTTGCTTTGTATTTCCT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           16990 48 +    111706 ataAACCCAATTCTTAAATAGTTGTTCTTCTCTTGCTTTGTACTTCCT
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     52357 48 + 192460366 ATAAACCCAGTTCTTAAATAGTTGTTCTTCTCTTGCTTTGTACTTCCT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     48832 48 - 187378091 ATAAACCCAATTCTTAAATAGTTGTTCTTCTCTTGCTTTGTACTTCCT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   400049 48 -  91754291 ATAAACCCAATTCTTAAATAGTTGTTCTTCTCTTGCTTTGTACTTCCT
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   917295 41 -  74750902 ATAAACCCAATTCTTA-------GTttttgttttgttttgtttttttt
i calJac3.chr17                C 0 I 49
s canFam3.chr33                 29059491 48 +  31377067 ATAAATCCTATTCTTAAGTAGTTTTTCTTTTCCTGCTTTGCATTTATT
i canFam3.chr33                I 416 C 0
e mm10.chr16                    65424179 927 -  98207768 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M
e panTro4.chr3_GL389630_random     68144 3019 +    103936 I

a score=195627.000000
s hg38.chr3_KI270935v1_alt        108044 150 +    197351 CAAGTGGGTGATACTTAATACAGTGGCTCATGTAATCTTAATTAC-TACATAT---GAGGACAC-------------------------GGACATGTACATATGATGC-----------TGATTACTGTTATTTTTGGAAGTAAAAAAATTGTAAAATTTGACTAGCTTAAAAAATCTGTAAAATATGGG
s nomLeu3.chr11                120844624 148 + 123690457 CAAATGGGTGATACCTAATACAGTGGCTCATGTAATCTTAGTTAC-TACATAT---GAAGACAC---------------------------ACATGTACGTATAGTGC-----------TGATTACTGTTATTTTTGGAAGTAAAAAAATTGTAAAATTTGACTAGCTTAAAAAATCTGTAAAATATGGG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           17038 174 +    111706 CAAATTGGTGATACCTAATACAGGGGCTCATGTAATATTAATTAC-TACATAT---GAGGACACATGTACACACATATATGTACATGACATATATGTACATATAATGT-----------TGATTATTGTTATTTTTGGAAGTAAAAAAA-TGTAAAATTTGACTAGTTTTAAAAATCTGTAAAATATGGG
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     52405 174 + 192460366 CAAATTGGTGATACCTAATACAGGGGCTCATGTAATATTAATTAC-TACATAT---GAGGACACATGTACACACATATATGTACATGACATATATGTACATATAATGT-----------TGATTATTGTTATTTTTGGAAGTAAAAAAA-TGTAAAATTTGACTAGTTTAAAAAATCTGTAAAATATGGG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     48880 175 - 187378091 CAAATTGGTGATACCTAATACAGGGGCTCATGTAATATTAATTAC-TACATATGAGGAggacacatgtacacacatatatgtacatgacatttatgtacatataatgc-----------tggtta---ttatttttggaagtaaaaaaagtgtaaaatttgactagtttaaaaaatctgtaaaatatggg
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   400097 172 -  91754291 CAAATTGGTGATACCTAATACAGGGGCTCATGTAATATTAATTAG-TACATAT---GAGGACACATGTACACACATGTATGTACATGACATATATGTACATATAATGC-----------TGATTA---TTATTTTTGGAAGTAAAAAAAGTGTAAACTTTGACTAGTTTAAAAAATCTGTAAAATATGGG
i chlSab2.chr15                C 0 C 0
s canFam3.chr33                 29059539 130 +  31377067 TGAATCGAGGATACCTGATAAAGTGGATAATTT-ATTTTAATTACATGCATAT---AAGGGCAT---------------------------ATATGTACATGCAATGCTTCCAATAACATGATTACTGTTA---TTGGAAGCCAAAAAT--------------------------TTTGTAAAATATAGG
i canFam3.chr33                C 0 C 0
e mm10.chr16                    65424179 927 -  98207768 I
e calJac3.chr17                   917336  49 -  74750902 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M
e panTro4.chr3_GL389630_random     68144 3019 +    103936 I

a score=375646.000000
s hg38.chr3_KI270935v1_alt        108194 311 +    197351 ATACACAAATTAGAgactgggtgcggtggctcatgcctgtaatcccagcactttgagaggccgaggcaggcggatcacttgaggccaggagtttgagaccaacccaggcaacatggtgaaatcctgtctctactaaaaatacacaaattagctgggcatagtggcaggtgcctgtaatcccaactactcaaaagggtgaggcaggagaatcacttgaacctgggaggcggaggttgcagtgagctgagattgcgtcactgcactccagcctgg-tgacagagcgagaccgtgtctcaaaaCGTCAACAAGAA
s nomLeu3.chr11                120844772 310 + 123690457 ATACACAAATTAGAggctgggtgcggtggctgacgcctgtaatcccagcactttgagaggccgaggcgggcggatcac--gaggtcaggagtttgagaccaacctaggcaacatggtgaaaaactgtctctactaaaaatacacaaattagctgggtgtagtggcaggtgcctgtaatcccagttactcaggaggctgaggcaggagaattgcttgaacctgggaggcagaggttgcagtgagctgagactgcgtcactgccctccagcctgggtgacagagcgagaccgtgtctcaaaaCATCAACGACAA
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           17212 308 +    111706 ATACACAAATCAGAggctgggtgcggtggctcacgcccgtaatcccggcactttgagaagcgaaggcgggcagatcacttgaggccagaagtttgagaccaacttaggcaacatggtgaaatcctgtctctactaaaaatacacaaattagctgggtgtggtggcatgtggctggaatcccaactactcaggaagctgaggcaggagaatcacttgaacccgggaagtggaggttgccgtgagcagagattggatcactgcactccagcctgg-cgacagagcgagcccctgtctcaaaa---caacaacaa
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     52579 308 + 192460366 ATACACAAATCAGAggcagggtgcggtggctcacgcctgtaatcccggcactttgagaggccaaggcgggcagatcacttgaggccagaagtttgagaccaacttaggcaacatggtgaaatcctatctctactaaaaatacacaaattagctgggtgtggtggcatgtggctgtaatcccaactactcaggaagctgaggcaggagaatcacttgaacccgggaagtggaggttgccctgagcagagattgcatcactgcactccagcctgg-cgacagagcgagcccctgtctcaaaa---caacaacaa
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     49055 308 - 187378091 ATACACAAatcagaggctgggtgcggtggctcacgcctgtaatcccagcactttgagaggccaaggtgggtggatcatttgaggccagaagtttgagaccaacttaggcaacatggtgaaatcctgtctctactaaaaatacacaaactagctgggcgtggtggcatgtggctgtaatcccaactactcaggaggctgaggcaggagaatcgcttgaactcaggaagtggaggttgccgtgagctgagattgcgtcactgcactccagcctgg-cgacagagcgagcccctgtctcaaaa---caacaacaa
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   400269 308 -  91754291 ATACACAAATCAGAggctgggtgcggtggctctcgcctgtaatcccagcactttgagaggccgaggcaggcggatcacttgaggctagaagtttgagaccaacttaggcaacatggtgaaatcctgtctctactaaaaatacacaaattagcagggcgtggtggcatgtggctgcaatcccaactactcaggaggctgaggcaggagaatcgcttgaacccaggaagtggaggttgctgtgagctgagattgtgtcactgcactccagcctgg-cgacagagcgagcccctgtctcaaaa---caacaacaa
i chlSab2.chr15                C 0 C 0
e mm10.chr16                    65424179 927 -  98207768 I
e canFam3.chr33                 29059669   0 +  31377067 C
e calJac3.chr17                   917336  49 -  74750902 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M
e panTro4.chr3_GL389630_random     68144 3019 +    103936 I

a score=120584.000000
s hg38.chr3_KI270935v1_alt        108505 111 +    197351 CAACACAAATTAGAAGCATTTGGGAACTAAAATGTATCATTATGATTGCATGTGG---GTGGGTTGGGGGGGGACAATAAAGAGGAAGA---------GAGACtgtgtgtgtg----------tgt----gtgtgtg
s nomLeu3.chr11                120845082 117 + 123690457 CAACACGAATTAGAAGCATTTGGGAACTAAAGAGTATAATTATGATTGCATGTGGTGCGGGGGTTGGGGGGA-ACAATAAAGAGGAAGAA-----AGAGAGAAtgtgtgtgtg----------tgt----gtgtgtg
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           17520 117 +    111706 caaaacaaaTTAGAAGCATTTGGGAACTAAAATGTATCATTATGATTGCATGTGG------TGGTGGGAGGA-ACAATAAAGAGGAAGAA-----AGAGAAtgtgtgtgtgtgtgtaaa----tgt----gtatgtg
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     52887 121 + 192460366 caaaacaaaTTAGAAGCATTTGGGAACTAAAATGTTTCATTATGATTGCATGTGG------TGGTGGGAGGA-ACAATAAAGAGGAAGAA-----AGAGAAtgtgtgtgtgtgtgtaaatgtgtgt----gtatgtg
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     49363 130 - 187378091 caaaacaaattagaAGCATTTGGGAACTAAAATGTATCATTATGATTGCATGTGG------TGGTAGGGGGG-acaataaagaagaagaaaaaagagagaatgtgtgtgtgtgtgtgtatgtgtgtgcgcgtatgtg
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   400577 113 -  91754291 caaaacaaaTTAGGAGCATTTGGGAACTAAAATGTATCATTATGATTGCATGTGG------TGGGGGGGGGG-ACAATAAAGAGGGAGAA-----AGAGAGAGAAtgtgtgtgtg--------tat----gtatgtg
i chlSab2.chr15                C 0 C 0
s canFam3.chr33                 29059669  89 +  31377067 CTATGCCAATTAGAAGCATTTGGGAACTAAAGTGTATAATTAtgtgtgtgtgtgt------gtgtgtgagag-a-gagagagagagagag-----agagaga-----------------------------------
i canFam3.chr33                C 0 C 0
e mm10.chr16                    65424179 927 -  98207768 I
e calJac3.chr17                   917336  49 -  74750902 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M
e panTro4.chr3_GL389630_random     68144 3019 +    103936 I

a score=23158.000000
s hg38.chr3_KI270935v1_alt        108616 20 +    197351 tgtgtg--------CACGCCTGTATTAC
s nomLeu3.chr11                120845199 28 + 123690457 tgtgtgtgCGCGTGCATGCCTGTATTAC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           17637 28 +    111706 cgtgtgtgtgtgCGCACACCTCTATTAC
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     53008 28 + 192460366 cgtgtgtgtgtgCGCACACCTCTATTAC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     49493 28 - 187378091 tgtatgtacgcGCACACACCTATATTAC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   400690 28 -  91754291 tgtgtgtgcgtgCACACACCTGTATTAC
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   917385 14 -  74750902 TGTGTG--------------TGTATTCC
i calJac3.chr17                I 49 C 0
s canFam3.chr33                 29059758  7 +  31377067 ---------------------gaATTAC
i canFam3.chr33                C 0 C 0
e mm10.chr16                    65424179 927 -  98207768 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M
e panTro4.chr3_GL389630_random     68144 3019 +    103936 I

a score=531385.000000
s hg38.chr3_KI270935v1_alt        108636 207 +    197351 TGGAGATGACCAAAGTTAGCAGGAGTAATGTTACCAAGCTAACAGGAGCCAGAAGTCCCTGGAGAAAACTCTCCAGCTATTTAAGATTCTAAA-GTGTGTGTATATGAGGTAAAAATGCCAC--GTTTTATAAAGACAAATTTAAGCATGGACCTAAACAAGATGGCCTGTCTAAAGTCACCTGTGACTTGGTGTGAGCTCTGAGACGGC
s panTro4.chr3_GL389630_random     71163 209 +    103936 TGGAGATGACCAAAGTTAGCAGGAGTAATGTTACCAAGCTAACAGGAGCCAGAAGTCCCTGGAGAAAACTCTCCAGCTATTTAAGATTCTAAA-GTGTGTGTATATGAGGTAAAAATGCCACATGTTTTATAAAGACAAATTTAAGCGTGGACCTAAACAAGATGGCCTGTCTAAAGTCACCTGTGACTCGGCGTGAGCTCTGAGACGGC
i panTro4.chr3_GL389630_random I 3019 C 0
s nomLeu3.chr11                120845227 207 + 123690457 TGGAGATGACCAAAGTTAGCAGGAGTAATGTTACCAAGCCAACAGGAGCCAGAAGTGCCTGGAGAAAACTCTCCAGCTATTTAAGATTCTGAA-GTGTATGTATATGAGGTAAAAATGCCAC--GTTTTATAAAGACAAATCTAAGCGTGGACCTAAACCAGATGGCCTGTCTAAAGTCACCTGTGACTCGGCGTGAGCTCTGAGACGGC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           17665 210 +    111706 TGGAGATGACCAAAGTTAGCAGGAGTAATGTTACCAAACCAACAGGAGCCAGAAGTGCCTGGAGAAAACTCTCCAGCTATTTAAGATTCTAAAGGTGTGTGTATATGAGGTAAAAATGTCACATGTTTTATAAAGACAAATTTAAGCGTGGACCTAAACAAGATGGCCTGTCTAAAGTCACCTGTGACTTGGCGTGAGCTCTGAGACGGC
i rheMac3.chrUn_JH291127       C 0 I 15
s macFas5.chr2                     53036 210 + 192460366 TGGAGATGACCAAAGTTAGCAGGAGTAATGTTACCAAACCAACAGGAGCCAGAAGTGCCTGGAGAAAACTCTCCAGCTATTTAAGATTCTAAAGGTGTGTGTATATGAGGTAAAAATGTCACATGTTTTATAAAGACAAATTTAAGCGTGGACCTAAACAAGATGGCCTGTCTAAAGTCACCTGTGACTTGGCGTGAGCTCTGAGACGGC
i macFas5.chr2                 C 0 I 11
s papAnu2.chr2                     49521 210 - 187378091 TGGAGATGACCAAAGTTAGCAGGAGTAACGTTACCAAACCAACAGGAGCCAGAAGTGCCTGGAGAAAACTCTCCAGCTATTTAAGATTCTAAAGGTGCGTGTATATGAGGTAAAAATGTCACATGTTTTATAAAGACAAATTTAAGCGTGGACCTAAACAAGATGGCCTGTCTAAAGTCACCTGTGACTTGGCGTGAGCTCTGAGACAGC
i papAnu2.chr2                 C 0 I 11
s chlSab2.chr15                   400718 210 -  91754291 TGGAGATGACCAAAGTTAGCAGGAGTAATGTTACCAAACCAACAGGAGCCAGAAGTGCCTGGAGAAAACTCTCCAGCTATTTAAGATTCTAAAGGTGTGTGTATATGAGGTAAAAATGTCACATGTTTTATAAAGACAAATTTAAGCGTGCGCCTAAACAGGATAGCCTGTTTAAAGTCACCTGTGACTTGGCGTGAGCTCTGAGATGGC
i chlSab2.chr15                C 0 I 15
s calJac3.chr17                   917399 204 -  74750902 TGGA-ATGGTCAACCTTACCAGGAGTAATGTTACCAAACCAGCAGGAGCCAAAAGCACCCGGAGAAAACTCTCCAGAGATTGAAGATTCCAAA--GGGGTGCATGTGAGGTAAAACTGTCAC--GTTTTATAAAGACAAATGGAAGCGTAGTCCT-AACAAGACAGCCCGTCTGAAGTCCCCGGCGACTCTGCGTGAACTGTGAGTTGGT
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29059765 202 +  31377067 TGGAGATGACCAGAATTAGCAGAACTAATGCAAGAACAGCAGCAAGAACCCGAAG-GCCTGGGGAAAATTCTCCAGTTATTTAAGACT-TAAAGGTGTGTGTGTATGAGGTGAAA-TGGCACATATTTCATGAAAATGGAGCGGGGTGTGGACTTAAACAAGATAGCCTGGCTAAAGTCACCTGTGAC--AGCACAAACACACAGGC---
i canFam3.chr33                C 0 C 0
e mm10.chr16                    65424179 927 -  98207768 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=917.000000
s hg38.chr3_KI270935v1_alt        108843 8 +    197351 -GAAACTCC
s panTro4.chr3_GL389630_random     71372 8 +    103936 -GAAACTCC
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120845434 8 + 123690457 -AAAACTCC
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     53257 4 + 192460366 -GAAG----
i macFas5.chr2                 I 11 C 0
s papAnu2.chr2                     49742 4 - 187378091 -GAAG----
i papAnu2.chr2                 I 11 C 0
s calJac3.chr17                   917603 8 -  74750902 -GAAACTCC
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29059967 8 +  31377067 AAAAACAC-
i canFam3.chr33                C 0 C 0
e rheMac3.chrUn_JH291127           17875 15 +    111706 I
e mm10.chr16                    65424179 927 -  98207768 I
e chlSab2.chr15                   400928 15 -  91754291 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=1409769.000000
s hg38.chr3_KI270935v1_alt        108851 564 +    197351 ACAGCAATGATGAAGACAACGTGAGGTGGAACTTCTCTGACCAGAGACCTCATCTGAAGCTTCTGCCACAGCCAGTCCTGCCTTCATCCCTTGAGAGGGG------------------GATTGGCCACCAAAGTATGCAAAGCATTTGAATGGAAACGAATTCCGTGGGTGCGCCCCACACTTTAAT-AGTGGCCATCATATCACTTTCTGGTGCCAGTAAATGCGTAAAGGGGTGCATCATGCCAGTGACCTATCACTCATCATCCCAGTCATT--AAGCCACTTACTTCAGGCCTGTGGGGAGTTTCTGGAAGGCTCCTTTGA-AGCAGGGAAGAATGGGCAAGGGAGTCTGTGTCTTTGGCCAAGCTTTGCCCCAGATAGCTCCTTTTGCCACT--CTCGAGCCCACTGAAGGTGTCCCAGCTG-CTGCCACC------AGCAGGGGTCGGGG-GTCTGCACCCTTCTCTCTTCCAAGCAAACTCACACCTGGCACCC---TGGGG--------AAGGGTCAGTCAGTTATTTTATTCCAGGGGCCAAAGCGACAGAATCCAGACCACTTGTAGCCAGGGAATGAGCTGACGAAAATGGATGGT
s panTro4.chr3_GL389630_random     71380 567 +    103936 ACAGCAATGATGAAGACAACGTGAGGTGGAACTTCTCTGACCAGAGACCTCATCTGAAGCTTCTGCCACAGCCAGTCCTGCCTTCATCCCTTGAGAGGGG------------------GATTGGCCACCAAAGTATGCAAAGCATTTGAATGGAAACGAATTCCGTGGGTGCGCCCCACACTTTAAT-AGTGGCCATCGTATCACTTTCTGGTGCCAGTAAATGCGTAAAGGGGTGCATCATGCCAGTGACCTGTTACTCATCATCCCAGTCATT--AAGCCACTTACTTCAGGCCTGTGGGGAGTTTCTGGAAGGCTCCTTTGA-AGCAGGGAAGAATGGGCAAGGGAGTCTGTGTCTTTGGCCAAGCTTTGCCCCAGATAGCTCCCTTTGCCACT--CTCGAGCCCACTGAAGGTGTCCCAGCTG-CTGCCACC------AGCAGAGGTCGGGG-GTCTGCACCCTTCTCTCTTCCAAGCAAACTCACACCTGGCACCCCCATGGGG--------AAGGGTCAGTCAGTTATTTTATTCCAGGGGCCAAAGCGACAGAATCCAGACCACTTGTAGCAAGGGAATGAGCTGACGAAAATGGATGGT
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120845442 572 + 123690457 ACAGCAATGATGAAGACAACGTGAGGTGGAACTTCTCTCACCAGAGACCTCATCTGAAGCTTCTGCCACAGCCAGTCCTGCCTTCATCCCTTGAGAGGGG------------------GATTGGCCACCAAAGTATGCAGAGCATTTGAATGGAAACAAATTCCATGGGTGTGCCCCACACTTTAAT-CGTGGGCATCATATCACTTTCTGGTGCCAATAAATGCGTAAAGGGGTATATCATGCCAGTGACCTATTACTCATCATCCTAGTCATT--AAGCCACTTACTTCAGGCCTACGGGGAGTTTCTGGAAGGCTCCTTTGA-AGCAGGGAAGAATGCACAAGGGAGTCTGTGTCTTTGGCCAAGCTTCACCCCAGATAGCTCCCTTTGCCACT--CCCGAGCCCACTGAAGGTGTCCCAGCTG-CTGCCACC------TGCAGGGGATGGGG-GTCTGCGCCCTTCTCTCTTCCAAGCAAACTCACACCTGGCACCC---TGGGAAGTTTGCTAAGGGTCAGTCTGTTATTTTATTCCAGGGGCCAAAGCGACAGAATCCAGACCACCTGTAGCCAGGGAATGAGCTGACGAAAATGGATGGT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           17890 566 +    111706 ATAGCAATGATGAAGACAATGTGAGGTGGAACTTCTCTGACCAGAGACCTCATCTGAAGCTTCTGCCATAGCCAGTCCTGCCTTCATCCCTTGTGAGGGG------------------AATTGGCCACCATATTATGCAAAGCATTTGAATGGAAACAAATTCCATGGGTGTGCCCCACACTTTAATGAGTGGACAGCATGTCACTTTCTGGTGCCAATAAATGCGTAAAGGTGTGTATCATGCCAGTTACCTGTTACTCATTATCCTAGTCATT--AAGCCACTTACTTCAGGCCTGCGGGGAGTTTCTGGAAGGCTCCTTTGA-AGCAGGGAAGAATGGGCAAGGGAGTCTGTGTCTTTAGCCAAGCTTTGCCCCAGAGAGCTCCCTTTGCCACT--CCCGAGCCCACTGAAGGTGTCCCGGCTGCCTGCCACC------AGCAGGGGACGGGG-GTCTGCGCCCTTATTTCTTCCAAGCAAACTCACACCTGGCACCC---CGGGG--------AAGGGTCAGTCAGTTCTTTTATTCCAGGGGCCAAAGCGACAGAATTCAGACCACTTGGAGCCAGGGAATGAGCTGACGAAAATGGATGGT
i rheMac3.chrUn_JH291127       I 15 C 0
s macFas5.chr2                     53261 566 + 192460366 ATAGCAATGATGAAGACAATGTGAGGTGGAACTTCTCTGACCAGAGACCTCATCTGAAGCTTCTGCCATAGCCAGTCCTGCCTTCATCCCTTGTGAGGGG------------------AATTGGCCACCAAATTATGCAAAGCATTTGAATGGAAACAAATTCCATGGGTGTGCCCCACACTTTAATGAGTGGACAGCATGTCACTTTCTGGTGCCAATAAATGCGTAAAGGTGTGTATCATGCCAGTTACCTGTTACTCATTATCCTAGTCATT--AAGCCACTTACTTCAGGCCTGCGGGGAGTTTCTGGAAGGCTCCTTTGA-AGCAGGGAAGAATGGGCAAGGGAGTCTGTGTCTTTAGCCAAGCTTTGCCCCAGAGAGCTCCCTTTGCCACT--CCCGAGCCCACTGAAGGTGTCCCGGCTGCCTGCCACC------AGCAGGGGACGGGG-GTCTGCGCCCTTATTTCTTCCAAGCAAACTCACACCTGGCACCC---CGGGG--------AAGGGTCAGTCAGTTCTTTTATTCCAGGGGCCAAAGCGACAGAATTCAGACCACTCGGAGCCAGGGAATGAGCTGACGAAAATGGATGGT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     49746 566 - 187378091 ACAGCAATGATGAAGACAATGTGAGGTGGAACTTCTCTGACCAGAGACCTCATCTGAAGCTTCTGCCATAGCCAGTCCTGCCTTCATCCCTTGTGAGGGG------------------AATTGGCCACCAAATTATGCAAAGCATTTGAATGGAAACAAATTCCATGGGTGTGCCCTACACTTTAATGAGTGGACAGCATGTCACTTTCTGGTGCCAATAAATGCGTAAAGGTGTGTATCATGCCAGTTACCTGTTACTTATTATCTTAGTCATT--AAGCCATTTACTTCAGGCCTGCGGGGAGTTTCTGGAAGGCTCCTTTGA-AGCAGGGAAGAATGGGCAAGGGAGTCTGTGTCTTTAGCCAAGCTTTGCCCTAGATAGCTCCCTTTGCCACT--CCCGAGCCCACTGAAGGTGTCCCGGCTGCCTGCCACC------AGCAGGGGACGGGG-GTCTGCACCCTTATTTCTTCCAAGCAAACTCACACCTGGCACCC---CGGGG--------AAGGGTCAGTCAGTTCTTTTATTCCAGGGGCCAAAGCGACAGAATTCAGACCACTCGGAGCCAGGGAATGAGCTGACGAAAATGGATGGT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   400943 565 -  91754291 ACAGCAATGATGAAGACAATGTGAGGTGGAACTTCTCTGACCAGAGACCTCATCTGAAGCTCCTGCCACAACCAGTCCTGCCTTCATCCCTTGTGAGGGG------------------AATTGGCCACCAAATTATGCAAAGCATTTGAAAGGGAACAAATTCCATGGGTGTGCCCCACACTTTAATGTGTGGGCAGCATGTCACTTTCTGGTGCCAATAAATGTGTAAAGGTGTGTGTCATGCCAATTACCTATTACCTATTATCCTAGTCATT--AAGCCACTTACTTCA-GCCTACGGGGAGTTTCTGGAAGGCTTCTTTGA-AGCAGGGAAGAATGGGCAAGGGAGTCTGTGTCTTTGGCCAAGCTTTGCCCTAGATAGCTCCCTTTGCCACT--CCCGAGTCCACTGAAGGTGTCCCGGCTGCCTGCCACC------AGCAGGGGACGGGG-GTCTGCACCCTTATTTCTTCCAAGCAAACTCACACCTGGCACCC---CGGGG--------AAGGGTCAGTCAGTTCTTTTATTCCAGGGGCCAAAGCGACAGAATTCAGACCACTCGGAGCCAGGGAATGAGCTGACGAAAATGGATGGT
i chlSab2.chr15                I 15 C 0
s calJac3.chr17                   917611 557 -  74750902 ACAGCA---ATGAAGACAGCATGAGGTGGAACTTTTCTGCCCAGAGACCTCATCTGAAGCTTCGGCCACAGCCAGTCCTGCCTTCATCCTTTGTGAGGGG-------------------ACTGGCCACCAAATTATACAAAGCA-GTGAATGGACGTACATTCCATGGGCACGCCCCATACCTTCATGAGTGGGCGGCACACCACTTTCTGGTGCCAGTAAATGCTTGAAGGGGCATATCACGCCAGTTACCTATTACTCATCATCCTGGTCATT--AAGCCCCTGACTTCA-GCCTGTGGGGAATTTCTGGAAGGCTCCTTCAAGAGCAGGGAAGAAGGGGCAAGGGAATTTGTGTCTCTGGTCGCGCTTTGTCCCAGATG---------GCCACT--GCTGAGCCCACTGAAGGTGTTCCAGCTGCCTGCCACCAGGAAGAGCAGGAGACAGGG-GTCCGCGCTCTTCTCTCTGCCAAGCAAACTCATGCCTGGCACCC---TGGAG--------AAGAGCCAGTCAGTTCTTTCATTCCA-GGCCCAAAGTGACAGAATCCAGAGCACTCAGAACCAGGGAGTATGCTGAGGAAAACGCATGGT
i calJac3.chr17                C 0 I 316
s canFam3.chr33                 29059975 542 +  31377067 AAGGCCGTGACGAAGACAACGTGAGGTGGGACTATTGTGACAAGAGACTTCAGCTGAAGCTCCCGCCACAGCCAGTCCTTTGTTCAACCTCTGTAAggggcggggggggggcgggggggggccgccACCAGTGAGTGGAAAGCA-CTGAATGGCAACTGATCCCACGGGTGTACCCCAAATTCAAATGAGTGGGC-----GTCATTTTTTGGCATCAATAAATGTTTACATTGGTCTACGATGCCAGTTATCCATTGTTTGCTATCTTGGTCTTTAAAAGCTGCTCATCTTAAGCTCATGGGGATTTTCTGGAAGGTTCCTTGGAGAACAGGGAAGTATAAGCA----------TGTCT----------------CCAGACAGCTCCCTTTAAGGGTGCCCCGGGCCCACTGAGGGTGTTTCAACTGCCTG-CACC------AACTGGGAATGGGGTGGAGGCTTCTCCCCCTCTGCCAGGCTAACACGGGCCTGGAACCC---TGAAG--------AAGGGTCCATCAGTTC-TTCATTCTAGGTGCATAAGCAGCAGAATCCACATCACACAGATTCGGCGGGTGGGCTGA--------------
i canFam3.chr33                C 0 C 0
e mm10.chr16                    65424179 927 -  98207768 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=96246.000000
s hg38.chr3_KI270935v1_alt        109415 48 +    197351 TGTGTCCTTGTCCTTCTGACTGTCCCACTCGTGAAGGGGCAGCTCCCT
s panTro4.chr3_GL389630_random     71947 48 +    103936 TGTGTCCTTGTCCTTCTGACTGTCCCACTCGTGAAGGGGCAACTCCCT
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120846014 48 + 123690457 TGTGTCCTTGTCCTTCTAACTGTCCCACTTGTGAAGGGGCATCTCCCT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           18456 39 +    111706 TGTGTTCTTGTCCTTCTAACTGTCCCACTCATGAAGGGG---------
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     53827 39 + 192460366 TGTGTTCTTGTCCTTCTAACTGTCCCACTCATGAAGGGG---------
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     50312 39 - 187378091 TGTGTCCTTGTCCTTCTAACTGTCCCACTCATGAAGGGG---------
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   401508 39 -  91754291 TGTGTCCTTGTCCTTCTAACTGTCCCACTCATGAAGGGG---------
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   918484 48 -  74750902 TGTGCCCATGTCCTTCTAACTGTCCCACTCATGAAGGGGCAGCTCCCT
i calJac3.chr17                I 316 C 0
s canFam3.chr33                 29060517 34 +  31377067 --------------TCTGACTGCACCACTCACCAAGAGGCCTTTCCTT
i canFam3.chr33                C 0 I 669
e mm10.chr16                    65424179 927 -  98207768 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=366350.000000
s hg38.chr3_KI270935v1_alt        109463 164 +    197351 GTCCAGCTAGAGAAGGGTGTCCCCAGGTGCCCTCTCCTTTCTTGGGACGCCTCCTCCTCCCGTGCTGTCAGGGCCTCAGCGGCTTTGACTGGGCTCACCAAGaaaacacagaacagccacttaaatgagaacctcggataaacggtgaacacttaaaaatatac
s panTro4.chr3_GL389630_random     71995 164 +    103936 GTCCAGCTAGAGAAGGGTGTCCCCAGGTGCCCTCTCCTTTCTCGGGACGCCTCCTCCTCCCGTGCTGTCAGGGCCTCAGCGGCTTTGACTGGGCTCACCAAGaaaacacaggacatccacttaaatgagaacctcagataaacggtgaacacttaaaaatatac
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120846062 163 + 123690457 GTCCAGCTAGAGAAGGGTGTCCCCAGGTGCCTTCTCCTTTCCC-GGACGCCTCCTCCGCCCATGCAGTCAGGGCCTCAGCGGCTTTGACTGGGCTCAACAAGaaaacacaggacgcccagttaaattagaacctcagataaatgatgaacacttaaaaatagac
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           18495 161 +    111706 ---CAGCTAGAGAAGGGTGTCCCCAGGTGCCCTCTCCTTTCTTGGGACGCCTCTTCCTCCCATGCAGTCAGGGCCTCAGTGGCTTTGACTGGGCTCACCAAGaaaacacaggacgtccagttaaatgagaacctcagataaacgatgaacacttAAAAATATAC
i rheMac3.chrUn_JH291127       C 0 I 184
s macFas5.chr2                     53866 161 + 192460366 ---CAGCTAGAGAAGGGTGTCCCCAGGTGCCCTCTCCTTTCTTGGGACGCCTCTTCCTCCCATGCAGTCAGGGCCTCAGTGGCTTTGACTGGGCTCACCAAGaaaacacaggacgtccagttaaatgagaacctcagataaacgatgaacacttAAAAATATAC
i macFas5.chr2                 C 0 I 183
s papAnu2.chr2                     50351 161 - 187378091 ---CAGCTAGAGAAGGGTGTCCCCAGGTGCCCTCTCTTTTCCTGGGACGCCTCTTCCTCCCATGCAGTCAGGGCTTCAGTGGTTTTGACTGGGCTCACCAAGAAAACACAGGATGTCCAGTTAAATGAGAACCTCAGATAAACGatgaacacttaaaaatatac
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   401547 161 -  91754291 ---CAGCTAGAGAAGGGTGTCCCCAGGTGCCCTCTCCTTTCCTGGGACGCCCCTTCCTCCCATGCAGTCAGGGCCTCAGTGGCTTTGACTGGGCTCACCAAGaaaacccaagatgtccagttcaatgagaacctcagataaacgatgaacacttaaaaatatac
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   918532 162 -  74750902 GTCCAGCTAGAGGAGGGTGTTCCCCGGTGCCCTCTCCCTTCCTGTGATGTCTCCTCCTCCCTCACAGTCAGGGCCTCAGCAGCTTTGACTgggttcaccaagaaaacacaggacgtccagttaaattagaaccttggataaatgacggacacttaaaaacac--
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65424179 927 -  98207768 I
e canFam3.chr33                 29060551 669 +  31377067 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=1553075.000000
s hg38.chr3_KI270935v1_alt        109627 726 +    197351 aagaatgttccaaatagttcatgggatatctttaaactaaaacaattatttgtggttaatctgaaatttaagctgggctgcttgtattttcatttgctaaattggacagccctaCtttc----------attattattattattattattattgagacccagtctcactctgtcacccaggctggagtgcagtggtgccatctcggctcactgcaagctccgcctcctggtttcaagggattctcctgtctcagcctcccaagtagctgggattacaggtgtgcgccaccacgcccagctaatttgttatatttttggtagaaacagggtttcaccatgttggtcaggctggtcttgaactcctgacctcaggtgacttgcctgcctcggcctcccaaagtgctgggattacaggtgtgagccaccacacctggccCAGACAGCCCTACTTTTAATGCATCCTCTCCCACGAGGGTCCCTGGCTCCTCTCTTCCGTCCAATCTGCGGGTCTCCTTCAGGGGTAGCAAGCTCCCAGCCTTCTCCCAGGTATTGGGCCTCTCCTCTGCCTCGGGAGGAGCTGTCCATCAAACACAGGCTCTGTCCTCCCGCTCCCTCCATTGCTTA------------------GTGTGTGAAGGTGGACAGGGGAGGAGGGACCTTGGGTTTGGGGCGGTTCTGCTCCCCACTCGCTGCTTTGCTTTTGCTCTTTCTGGTTT-CCTTTCTCCGCAGTTGATGACAC
s panTro4.chr3_GL389630_random     72159 723 +    103936 aagaatgttccaaatagttcaggggatatctttaaactaaaacaattatttgtggttaatctgaaatttaaactgggctgcttgtattttcatttgctaaattggacagccctaCTTTC-------------attattattattattattattgagaccgagtctcactctgtcacccaggctggagtgcagtggtgccatctcggctcactgcaagctccgcctcctggtttcaagggattctcctgtctcagcctcccaagtagctgggattacaggtgtgcgccaccacgcccagctaatttgttatatttttggtagaaacagggtttcaccatgttggtcaggctggtcttgaactcctgacctcaggtgacttgcctgcctcggcctcccaaagtgctgggattataggtgtgagccaccacacctggGCCAGACAGCCCTACTTTTAATGCATCCTCTCCCACGAGGGTCCCTGCCTCCTCTCTTCCCTCCAATCTGCGGGTCTCCTTCAGGGGTAGCAAGCTCCCAACCTTCTCCCAGGTATTGGGCCTCTCCTCTGCCTCGGGAGGAGCTGTCCATCAAACACAGACTCTGTCCTCCCGCTCCCTCCATTGCTTA------------------GTGTCCGAAGGTTGACGGGGGAGGAGGGACCTTGGGTTCGGGGCGGTTCTGCTCCCCACTCGCTGCTTTGCTTTTGCTGTTTCTGGTTT-CCCTTCTCCGCAGTTGATGACAC
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120846225 724 + 123690457 aagaatgttccagatagttcatgagatatctttaaactaaaacaattatttgtggttaatctgaaatttaagcttggcttcttgtattttcatttgctaaattggacagccctaCTTTttattattattgttattattattattattattattaagaccgagtctcgctctgtcgcccaggctggagtgcagtggtgccatctcagctcactgcaagctccgcctcccggtttcaagggattctcctgtctcagcctcccaagtagctgggattacaggtatgtgccaccacgcccagctaattttttatatttttggtagaaacggggtttcaccatgttggtcaggctggtcttgaactcctggcctcaggtgacctgcctgcctcggcctcccaaagtgctgggattataggtgtgagccaccgcacctggccCAGACAGCCCTACTTTTAAGGCATCCTCTCCCACCAGAGTCCCCGCCTCCTCTCTTCCCTCCAATCTGCGGGTCTCCTTCAGGGGTAGCAAGCTCCCAGCCTTCTCCCAGGTATTGGGCCTCTCCTCTGCCTCGGGAGGGGCTGTCCATCACACACAGACTCTGTCTTCCCGCTCCCTCCATTGGTTA------------------GTGTCCGAAGATGGACGGGGGAGGAGGGCCCTTGGGTTTGGGGCGGTTCTGCTCCCCACTCGCCGCTTTGCTTTTGCT-------------CTTTCGCCGCAGCTGATGACAC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           18840 725 +    111706 aagaatgttccaaatagttcatgggatgtctttacactaaaacaattatttgtggttaatctgaaatttaagctgagcttcctacattttcatttgctaaatcggacagccctaCtttt----------attatttttgtttgtattttatttgagaccgagtctcgctctgtctcccaggctggagcgcagtggtgccaactgggctcattgcaaccatcacctcctgggttcaagggagtctcctgtctcagcctcccgagtagctgggattacaggtgtgtgccaccaagcccagctaattttttatatttttggtagagacagggtttcaccatgttggtcaggctggtcttgaactcctgacctctggtgatccgcctgcctcggcctcccaaagtgctgggattataggcgtaagccaccgcacctggccCAGACAGCCCTACTTTTAATGCATCGCCTCCCACCAGGGTCCCCGCCTCCTCTCTTCCCTCCAATCTGCGGGTCTCCTTCA-GCGTATCAAGCTCTCAACCTCCCCCCACGCATCAGGCCTCTCCTCTGCCTCGGGAGGAGCTGTCCATCACACACAGACTCTGTCTTCCCGCTCCCTCCATTGCTCA------------------GCGTCGGAAG-TGGACGCGGGAGGACGGACCTTGGGTTTGGGGCAGCTCTGCTCCCCACTCACCACTTTGCTTTTGCTCTTTCCGGTTTCCCAATCTCCACAGTTGATGACAC
i rheMac3.chrUn_JH291127       I 184 C 0
s macFas5.chr2                     54210 725 + 192460366 aagaatgttccaaatagttcatgggatgtctttacactaaaacaattatttgtggttaatctgaaatttaagctgagcttcctacattttcatttgctaaatcggacagccctaCtttt----------attatttttgtttgtattttatttgagacggagtctcgctctgtctcccaggctggagcgcagtggtgccaactgggctcattgcaaccatcacctcctgggttcaagggagtctcctgtctcagcctcccgagtagctgggattacaggtgtgtgccaccaagcccagctaattttttatatttttggtagagacagggtttcaccatgttggtcaggctggtcttgaactcctgacctctggtgatccgcctgcctcggcctcccaaagtgctgggattataggcgtgagccaccgcacctggccCAGACAGCCCTACTTTTAATGCATCGCCTCCCACCAGGGTCCCCGCCTCCTCTCTTCCCTCCAATCTGCGGGTCTCCTTCA-GCGTATCAAGCTCTCAACCTCTCCCCACGCATCAGGCCTCTCCTCTGCCTCGGGAGGAGCTGTCCATCACACACAGACTCTGTCTTCCCGCTCCCTCCATTGCTCA------------------GCGTCGGAAG-TGGACGGGGGAGGACGGACCTTGGGTTTGGGGCAGCTCTGCTCCCCACTCACCACTTTGCTTTTGCTCTTTCCGGTTTCCCAATCTCCACAGTTGATGACAC
i macFas5.chr2                 I 183 C 0
s papAnu2.chr2                     50512 725 - 187378091 aagaatGTTCCAAATAGTTCATGGGATATCTTTAAACTAAAACAATTATTTGTGGTTAATCTGAAATTTAAGCTGAGCTTCCTACATTTTCATTTGCTGAATCGGACAGCCctactttt----------attacttttgtttttattttatttgagactgagtctcgctctgtctcccaggctggagtgcagtggtgccaactcggctcattgcaaccatcgcctcccaggttcaagggagtctcctgtctcagcctcccaagtagctgggattacaggtgtgtgccaccaggcccagctaattttttatatttttgatagagacagggtttcaccatgttggtcaggctggtcttgaactcctgatctctggtgatccgcctgcctcggcctcccaaagtgctgggattataggcgtgagccaccgcacctggcccagacaGCCCTACTTTTAATGCATCGCCTCCCACCAGGGTCCCcgcctcctctcttccctccaaTCTGCGGGTCTCCTTCA-GCGTATCAAGCTCTCAACCTTCCCCCAGGCATCAGGCCTCTCCTCTGCCTCGGGAGGAGCTGTCCATCACACACAGACTCTGTCTTCCCGCTTCCGCCATTGCTCA------------------GTGTCGGAAG-TGGACGGGGGAGGACGGACCTTGGGTTTGGGGCAGCTCTGCTCCCCACTCACCACTTTGCTTTTGCTCTTTCCGGTTTCCCAATCTCCACAGCTGATGACAC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   401708 723 -  91754291 aagaatgttccaaatagttcatgggatatctttaaactaaaacgattatttgtggttaatctgaaatttaagctgagcttcccatattttcatttgctaaatcggacagccctaCtttt----------attatttttgtttttattttatttgagactgagtctcgctctgttgcccaggctggagtgcagtggtgccaacttggctcattgcaaccatagcctccgaggttcaagggagtctcctgtctcagcctcccgagtagctgggattacaggtgtgtgccaccacgcccagctaattttttatatttttggtagagacagggtttcaccatgttggtcaggctggtcttgaactcctgacctctggtgatccgcctgcctcagcctcccaaagtgctgggattataggcgtgagccaccgcacctggccCAGACAGCCCTACTTTTAATGCACCGCCTCCCACCAGGGTCCCCGCCTCCTCTCTTCCCTCCAATCTGCGGGTCTCCTTCA-GCGTATCACGCTCTCAACCTCCCCCCAGGCATCAGGCCTCTCCTCTGCCTCGGGAGGAGCTGTCCATCACACACAGACTC--TCTTCTCGCTCTCTCCATTGCTCA------------------GTGTCGGAAG-TGGACGGGGGAGGACGGACCTTGGGTTTGGGGCAGCTCTGCTCCCCACTCGCCACTTTGCTTTTGCTCTTTCCGGTTTCCCAATCTCCACAGTTGATGACAC
i chlSab2.chr15                C 0 I 524
s calJac3.chr17                   918694 726 -  74750902 aggaacgtccgaaatggttcatgggatgtctttatactaaaccagttatttgtggttaatctgaaatttaagctg-gcctcctgtattttcatttgctgaatcagacagccttaCtttt----------attagtttatttttt------tttaagccggagtctcactctgtcgcccaggctggagtgtagtggcaccatcttggctcactgcaacctctgcctcccaggttcaagggaccctcctgactcaacctcctgagtagctgggactacaggcgtgcgtcaccacccctggctagttttttatatttttggtagagatggggtttcatcgtgctggtcaggctggtctcaaactcctgacttcaggtgatccacctgcctcggtctcccaaagtgctgggattataggcgtgagccaccatgcctggccTAGAAAGCCCAACTTTTCATGTATCCTCTCCCACCAGGCTCCCCACCTCCTCTTTTCTCTCCAATCTGCAGGGCTCCTTCAGCGGTAGCAAGCCCCCATCATTCTCCCAGGCACTGCATCTCTTGTCTGCTTCGGGAGA-----------ACACACGAACTCCGTCCTCCTGCTTCCTCCATTGCACAGTGGCAGCAGGGGAAGCTGTGTCTGAAGATGGACGGGGGAGGAGGGACCTTGGGTTTGGGGCGGGCCTGCTTCCCGTTTGCCACTTTGCTTTTGCTCTTCCTGGTTT-TCCTTCCCCACAGTTGATGGCGC
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65424179 927 -  98207768 I
e canFam3.chr33                 29060551 669 +  31377067 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=1638.000000
s hg38.chr3_KI270935v1_alt        110353 3 +    197351 AGG
s panTro4.chr3_GL389630_random     72882 3 +    103936 AGG
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120846949 3 + 123690457 ACG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           19565 3 +    111706 GCG
i rheMac3.chrUn_JH291127       C 0 I 697
s macFas5.chr2                     54935 3 + 192460366 GCG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     51237 3 - 187378091 GCG
i papAnu2.chr2                 C 0 C 0
s calJac3.chr17                   919420 3 -  74750902 ACA
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65424179 927 -  98207768 I
e canFam3.chr33                 29060551 669 +  31377067 I
e chlSab2.chr15                   402431 524 -  91754291 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=2100.000000
s hg38.chr3_KI270935v1_alt        110356 1 +    197351 G
s panTro4.chr3_GL389630_random     72885 1 +    103936 G
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120846952 1 + 123690457 G
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           20265 1 +    111706 G
i rheMac3.chrUn_JH291127       I 697 C 0
s macFas5.chr2                     54938 1 + 192460366 G
i macFas5.chr2                 C 0 I 628
s papAnu2.chr2                     51240 1 - 187378091 G
i papAnu2.chr2                 C 0 C 0
s calJac3.chr17                   919423 1 -  74750902 G
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65424179 927 -  98207768 I
e canFam3.chr33                 29060551 669 +  31377067 I
e chlSab2.chr15                   402431 524 -  91754291 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=31770.000000
s hg38.chr3_KI270935v1_alt        110357 32 +    197351 CACCCACAGCGCTCACGTGCCT-----TCCATGGTGG
s panTro4.chr3_GL389630_random     72886 32 +    103936 CACCCACAGCGCTCACATGCCT-----TCCATGGTGG
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120846953 32 + 123690457 CGCCCACAGCGCTCACATGCCT-----TCCATGGTGG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           20266 30 +    111706 CGCCCACAGCGCTCCCACGTCT-----TCCATGGC--
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     55567 30 + 192460366 CGCCCACAGCGCTCCCACGTCT-----TCCATGGC--
i macFas5.chr2                 I 628 C 0
s papAnu2.chr2                     51241 30 - 187378091 CCCCCACAGCGCTCCCACGTCT-----TCCATGGC--
i papAnu2.chr2                 C 0 C 0
s calJac3.chr17                   919424 32 -  74750902 TGCCTACAGCAGTCGTATATCTAACTGCGCAT-----
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65424179 927 -  98207768 I
e canFam3.chr33                 29060551 669 +  31377067 I
e chlSab2.chr15                   402431 524 -  91754291 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=1743932.000000
s hg38.chr3_KI270935v1_alt        110389 826 +    197351 GGGTGAATCCTTTGCCAATAGTGCCTGGTGGGTTTCAGGTAAGTTGTAACTTTTGGACCTTCTGCTGTCTCTGACTTTGAGTCACATGACAAGGTCCTCATGGAATTGGGATTCTGGCAGCCAGGTGAGGGCGGTCTCACCAGCTCCTTCATGCCTGCAGGCCTCCCCCTTCCTCACAACTGATGGATGGTTGGCTCCCTAGCCGCCCCGTTAGTGCCATGTGTGCTTAATTCTTTTAAAAATTTAAATATATTAATTTT-AAAATCATCttttaaataataaaatttgc--tttttagagcagttttgggtttacagcaaaattttcctgagtggaaaatacagaaagttcccatatgccccctgccacacacacatatacctacgcccagcctcccccaccaccaacgccctgcac--caggtgg--cacgtgtgacagtcgatgcgtccacgtcaacatatcctca----tcaaagtccagagttgacagcacatttttggcgttggatattctccattctctattcaacaacgtatcggctggcccggcgcagtggctcatgcctgtaatctcagcactttgggaggtggaggcgggtggatctctttgaga-tcaggagttcgagaccagcctggccaacacggcgaaaacccatctctactaaaaatacaaaaattagccgggtgtggtggcgcatgcctgtagtcttagctacatggaag--------------------gctgaggcaggagaatcgcttgaacccgggaggtggaggttgcagtgagcagagatcgcaccactgcactccattctgggcgacagagtgagactcaatctcaaaaaataa
s panTro4.chr3_GL389630_random     72918 825 +    103936 GGGTGAATCCTTTACCAGTAGTGCCTGGTGGGTTTCAGGTGAGTTGTAACTTTTGGACCGTCTGCTGTCTCTGACTTTGAGTCACATGACAAGGTCCTCATGGAACTGGGATTCTGGCAGCCAGGTGAGGGCGGTCTCACCAGCTCCTTCGTGCCTGCAGGCCTCCCCCTTCCTCACAACTGATGGATGGTTGGCTCCCTAGCCGCCCCCTTAGTGCCATGTGTGCTTAATTCttttaaaaatttaaatatattaattttaaaaatCATCttttaaataataaaatttgc--tttttagagcagttttgcgtttacagcaaaattgtcctgagtggaaaatacagaaagttcccatatgccccctgccacacacacatatacctacgcccagcctcccccaccaccagcgccctgcac--caggtgg--cacgtgtgacagtcgaggcgtccacgtcaacatatcctca----tcaaagtccagagttgacagcacatttctggcgttggatattctCCATTCTCTATTCAACAATGTATCGGCTggccaggcacagtggctcatgcctgtaatctcagcactttgggaggtggaggcgggtggatctc-ttgaga-tcaggagttctagaccagcctggccaacac-gcgaaaacccatctctactaaaaatacaaaaattacccgggtgtggtggcgcatgcctgtagtcttagctacttggaag--------------------gctgaggcaggagaatcgcttgagcctgggaggcagaggttgcattgagtcaaaatcacaccactgcactccattctgggggacagagtgagactccatctcaaaaaataa
i panTro4.chr3_GL389630_random C 0 I 4279
s nomLeu3.chr11                120846985 823 + 123690457 CGGTGAATCCTTTGCCAATAGTGCCTGGTGGGTTTCAGGTAAGTTGTAACTTTTGTACCTTCTGCTGTCTCTGAC--TGAGTCACATGACAAAGTCCTCATGGAATTGGGATCCTGGCGGCCAGGTGAGGGCGGTCGCACCAGCTCCTTCGTGCCTGC-GGCCTCCCCCTTCCTCACAACTGATGGACGGTGGGCTCCCTAGCCGCCCCCTTAGTGCCATATGTGCTTAATTCTTTTCAAAATTTAAATATATTAATTTT-AAAATCATCttttaaataataaaatttac--gtcttagagcagttttgggtttacagcaaaattttcctgagtggaaaatacagaaagttcccatataccccctgccacacacgcatatacctacgcccagcctcccccaccacgaacgccctgcac--caggtggcacacgtgtgacagtcgatgcgtccacgtcaacatatcctca----tcaaagtccagagtcgacagcgcatttttggcactggatattctccattctctattcaacaatgtatcggctggccgggtgcagtggctcatgcctgtaatcccagcactttgggaggtcgaggcgggtggatctc-ttgaga-tcaggagttctagaccagcctggccaacatggcgaaaacccatctctactaaaaatacaaaaattagccgggcatgatggcgcacacgtgtagtctcagctacgtggaag--------------------gctgaggcaggacagtcgcttgaacccaggaggcggaggttgcagtgagtcaagattgcaccactgcactccatcctgggcgacagagtgagactc-gtctcaaaaaataa
i nomLeu3.chr11                C 0 I 5
s rheMac3.chrUn_JH291127           20296 842 +    111706 GGGTGAATCCTTTGCCAATAGTCCCTGGTGGGTTTCGGGTGAGTCGTAGCTTTTGGGCCTTCTGCTGGCTCCGACTCTGAGTCACATGACGAAGTCCTCACGGAAGTGGGATTCTGGCGGCCAGGTGAGGGCTGTCTCATCAGTTCCTTCGTGCCTGCTGGCCTTCCACTTCCTCACAACTGACGGACGGTTGACTCCCTAGCCACCCCCTCAGTACAATGTGTGCTTAATTCttttaaaaatttaaatatattaatttt-aaaatCATCttttaaataataaaatttac--tttttaaagcagttttaggttcacagcaaaattttcctgagtggaaaatacagaaagttcccatataccccctgccacacacacatatccatacgcccagcttcccccaccatcaacaccctgca---cggggggcacatgtgtgacagtccatgcgtccacgtcagcatatcctca----tcaaagtccagagtttacagttcatttttggcgttggacatt---cattctctattcaacaatgtatcggctggtcgggcgcggtggttcatgcctgtaatcccagcagtttgggaggccgaggcaggtggatctc-ttgggg-tcaggagttcaagaccagcctggccaacatggcgaaa-cccatctctactaaaaatacaaaaattagctgggtgtgatgacgcacacctgtagtctcagctacttggaagactgaggagctggttggaaagctgaggcaggagaatcgcttgagcctgggaggcagaggttgcagtgagtcgagatcataccactgcactccatcctgggcgatagagcgagactgcatctcaaaaaataa
i rheMac3.chrUn_JH291127       C 0 I 5
s macFas5.chr2                     55597 843 + 192460366 GGGTGAATCCTTTGCCAATAGTCCCTGGTGTGTTTCGGGTGAGTCGTAGCTTTTGGGCCTTCTGCTGGCTCCGACTCTGAGTCACATGACGAAGTCCTCACGGAAGTGGGATTCTGGCGGCCAGGTGAGGGCTGTCTCATCAGTTCCTTCGTGCCTGCTGGCCTCCCCCTTCCTCACAACTGACGGACGGTTGACTCCCTAGCCACCCCCTCAGTACAATGTGTGCTTAATTCTTTTAAAAATTTAAATATATTAATTTT-AAAATCATCttttaaataataaaatttac--tttttaaagcagttttaggttcacagcaaaattttcctgagtggaaaatacagaaagttcccatataccccctgccacacacacatatccatacgcccagcttcccccaccatcaacaccctgca---cggggggcacatgtgtgacagtccatgcgtccacgtcagcatatcctca----tcaaagtccagagtttacagttcatttttggcgttggacatt---cattctctattcaacaatgtatcggctgttcgggcgcggtggttcatgcctgtaatcccagcagtttgggaggccgaggcaggtggatctc-ttgggg-tcaggagttcaagaccagcctggccaacatggcgaaaccccatctctactaaaaatacaaaaattagctgggtgtgatgacgcacacctgtagtctcagctacttggaagactgaggagctagttggaaagctgaggcaggagaatcgcttgagcctgggaggcagaggttgcagtgagtcgagatcataccactgcactccatcctgggcgatagagcgagactgcatctcaaaaaataa
i macFas5.chr2                 C 0 I 5
s papAnu2.chr2                     51271 843 - 187378091 GGGTGAATCCTTTGCCAATAGTCCCTGGTGGGTTTCGGGTGAGTCGTAGCTTTTGGGCCTTCTGCTGGCTCCGACTCTGAGTCACATGAGGAAGTCCTCAGGGAATTGCGATTCTGGCGGCCAGGTGAGGGCTGTCTCATCAGttccttcctgcctgctggcCTCCCCCTTCCTCGCAACTGACGGACGGTTGACTCCCTAGCCACCCCCTCAGTACAATGTGtgcttaattcttttaaaaatttaaatatattaatttt-aaaatcatcttttaaataatacaatttac--tttttagagcagtttgaggttcacagcaaaattttcctaagtggaaaatacagaaagttcccatataccccctgccacacacacatatccatatGCCCAGCTTCCCCCACCATCAACACCCTGCA---gggggggCACATGTGTGACAGTCCATGCGTCCACATCAGCATATCCTCA----TCAAAGTCCAGAGTTTACAGTTCATTTTTGGCGTTGGACATT---CATTCTCTATTCAACAATGTATCGGCTGGTCAGgcgcgatggttcatgcctgtaatcccagcagtttgggaggccaaggcaggtggatctc-ttgggg-tcaggagttcaagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagctggatgtggtgacgcacacctgtagtctcagctacttggaagactgaggagctagttggaaagctgaggcaggagaatcgcttgagcctgggaggcagaggttgcagtgagtcgagatcacaccactgcactccatcctaggcgatagagcgagactccatctcaaaaaataa
i papAnu2.chr2                 C 0 I 5
s chlSab2.chr15                   402955 825 -  91754291 GGGTGAATCCTTTGCCAATAGTCCCTGGTGGGTTTCGGGTGAGTCGTAGCTTTTGGGCCTTCTGCTGTCTCCGACTCTGAGTCACATGACGAAGTCCTCACGGAATTGGGATTCTGGCGGCCAG------------------GTTCCTTCGTGCCTGCTGGCCTCCCCCTTCCTCGCAACTGACGGACAGTTGACTCCCTAGCCGCCCCCTCAGTACGATGTGTGCTTAATTCTTTTAAAAATTTAAATATATTAATTTT-AAAATCATCttttaaataataaaatttac--tttttagagcagttttaggttcacagcaaaattttcctgagtggaaaatacagaaagttcccatataccccctg-cacacacgcatatccatatgcccagcctcccccaccatcaacaccctgca---cggggggcacgtgtgtgacagtccatgagtctgtgtcagcatatcctca----tcaaagtccagagtttacagttcatttttggcgctggacatt---cattctctattcaacaatgtatcggctggtcaggcgcggtggttcatgcttgtaatcccagcagtttgggaggccgaggcaggtggatctc-ttggggatcaggagttcaagaccagcctggtcaacatggcgaaaccccatctctactaaaaatacaaaaattagctgggtgtgatgacgcacacctgtagtatcagctacttggaagactgaggagctagttggaaagctgaggcaggagaatcgcttgagcctgggaggcagaggttgcagtgagtcgagatcacaccactgcactccatcctcggcgatagagtgagactccatctcaaaaaataa
i chlSab2.chr15                I 524 I 5
s calJac3.chr17                   919456 808 -  74750902 GGGTGAGTCCTT---------------GGGGGTATCGGATGAATTGTCACGTTTGGACCTTCTGCTGTCTCTGACCTTGAGTCACACGTCAAAGCCCTCATGGACTTGGGATTCTGCTGGCCAGGTGAGGGCAGTCTCACCAGCTCC-ACGTGCCTACGGGCCT--CTCTTCCTCGCAACTGACGGGTGCTTGGCTCCCAAGCTGCCCCCTTAGTGCCATGTGTGCTTTATTCttttaaaaatttaagtatattaattta-aaaatCATCttttaaacaataaaatttactttttttagagcagttttaggttcacagcaaaattttccagagtgggagatacagaaagttcccatataccccctgccacacac-catctgcgcacgcacagcctcccccaccatcaacatcctgcgccagagggggtacatttgtgacagccgatgcatccacagcaacctatcctcatcactcaaggtccagcgtctacagttcacttttggcgtcgga-------cattctccattcaacagtgtatctgctggccgggcgcggtggctcatgcctgtaatcccagcaatttgggaggttgaggtaggcagatctc-ttgagg-tcaggagttcaaga-aaacctgggcaacatggtaaaaccctgactctactaaaaatacaaaaattggctgagcatggtgtcgcgcgcctataatcccagctacttgggag--------------------gctgaggcaggagaatcacttgaacccaggaggcggaggttgcagtgaaccaaggtcatgccgctgcactccagcctgggtgacagagcgaggctccgtctcaaaaaataa
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65424179 927 -  98207768 I
e canFam3.chr33                 29060551 669 +  31377067 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=854003.000000
s hg38.chr3_KI270935v1_alt        111215 518 +    197351 -------------cataaatgtttctgccattgtagcatcatacagaaaaataagtagtttcagtgccctaaaaatcctctgtgcttcacttattcatccccaacccctggcaaccactgatcttttcactgtctccatagttttaccttttccagaatgtcatataattgcaaccgtaaggtaaatagccttttcagattgtcttctttcacatagt-atatgcatttaa-------gttttctgtatgtattttcatggctgtgtaattcatttcattttagcactgaataatattccatcgtctgaatgcaccataggttatttacccgttcacctgctgaaggacatcttggttgcttccaagttttggcaattatgaataaagctgctataaattatgaataaagctgctataaacctccatgtgcaggttttcgtgtggacaaaaacgttttctgtccctttgggtaaatatcaaggagtgtgattgctggactgcatagtaagagtatggttt-agtttggtaagaaagtgcc
s nomLeu3.chr11                120847813 518 + 123690457 -------------cataaatgtttctgccattgtagcatcatacagaaaaattagtagcttcagtgccctaaaaatcctctgtgcttcacttattcatccccaacccctggcaaccactgatcttttcactgtctccatagttttaccttttccagaatgtcatataattgcagtcataaggtaaatagccttttcagattgtcttctttcacacagt-atatgcattgaa-------gttttctgtatgtattttcatggctgtgtagttcatttcattttagcactgaataatattccatcgtctgaatgtaccatagattatttacccgttcacctgctgaaggacatcttggttgcttccaagttttggcaattatgaataaagctgctataaattatgaataaagctgctataaacctccatgtgcaggttttcgtgtggacaaaaacgttttctgtccctttgggtaaataccaaggagtgtgattgctggactgcatagtaagagtatggttt-agtttggtaagaaactgcc
i nomLeu3.chr11                I 5 C 0
s rheMac3.chrUn_JH291127           21143 496 +    111706 -------------aataaatgtttctgccattgtagcatcatacagaaaaataagtagtttcagtgccctaaaaatcctctgtgcttcacttattcatccctaacgcctggcaaccactgatctttttactgtctccataattttaccgtttccagaataccatataattgcaatcatgaggtaagtagccttttcagattctcttctttcacatagt-atatgcatttaa-------gttttctgtatgtattttcatagctgtatagttcatttcattttagcactgaataatattccatcgtctgaatgtaccatagattatttacccattcacctgctgaagggcatcttgattgcttccaagttttggc----------------------aattatgaataaagctgctataaatctccatgtgcaggttttcgtgtggacaaaaacattttccatccctttgggtaaataccaaggagtgtgattgctggactgcatagtaagagtatggttt-ggtttggtaagaaactgcc
i rheMac3.chrUn_JH291127       I 5 C 0
s macFas5.chr2                     56445 518 + 192460366 -------------aataaatgtttctgccattgtagcatcatacagaaaaataagtagtttcagtgccctaaaaatcctctgtgcttcacttattcatccctaacgcctggcaaccactgatctttttactgtctccataattttaccgtttccagaataccatataattgcaatcatgaggtaagtagccttttcagattgtcttctttcacatagt-atatgcatttaa-------gttttctgtatgtattttcatagctgtatagttcatttcattttagcactgaataatattccatcgtctgaatgtaccatagattatttacccattcacctgctgaagggcatcttgattgcttccaagttttggcaattatgaataaagctgctataaattatgaataaagctgctataaatctccatgtgcaggttttcgtgtggacaaaaacattttccatccctttgggtaaataccaaggagtgtgattgctggactgcatagtaagagtatggttt-ggtttggtaagaaactgcc
i macFas5.chr2                 I 5 C 0
s papAnu2.chr2                     52119 525 - 187378091 -------------aataaatgtttctgccattgtagcatcatacagaaaaataaatagtttcggtgccctaaaaatcctctgtgcttcaCTTATTCATCCCTAAcgcctggcaaccactgatctttttactgtctccataattttaccttttccagaatatcatataattGCAATCATGAGGTaagtagccttttcagattgtctTCTTTCACATAgt-atatgcatttaagttttctgttttctgtatgtattttcATAGCTGTATAGTTCATTTcattttagcactgaataatattccatcatctGAATGTACCATAGATTGTTTACccattcacctgctgaaggacatcttgattgcttccaagttttggcaattatgaataaagctgctataaattatgaataaagctactataaatcTCCATGTGCAGGTTTTCATGTGGACAAAAACATTTTCCAtccctttgggtaaataccaaggagtgtgattgctggactGCATAGTAAGAGTATGGTTT-GGTTtggtaagaaactgcc
i papAnu2.chr2                 I 5 C 0
s chlSab2.chr15                   403785 518 -  91754291 -------------aaaaaatgtttctgccattgtagaatcatacagaaacataagtagtttcagtgccctaaaaatcctctgtgcttcacttattcatccctaacgcctggcaaccactgatctttttactgtctccataattttaccttttccagaatatcatataattgcaatcatgaggtaagtagccttttcagattgtcttctttcacatagt-atatgcatttaa-------gttttctgtatgtattttcatagctgtatagttcatttcattttagcactgaataatattccatcgtctgaatgtaccatagattatttacccactcacctgctgaagggcatcttgattgcttccaagttttggcaattatgaataaagctgctataaattgtgaataaagctgctataaatctccgtgtgcaggttttcatgtggacaaaaacattttccatccctttgggtaaataccaaggagtatgattgctggactgcatagtaagagtatgcttt-ggtttggtaagaaactgcc
i chlSab2.chr15                I 5 C 0
s calJac3.chr17                   920264 497 -  74750902 aacaaaacaaaataaaatatgtttctgccattgtagcatcatatagaaaaacaagtattttcagtgccctaaacctcctctgtgctccacctgttcagccctaagccctggcaaccacggatctttttactgtctccataattttgccctttccagaacgtcatgtgatgggaatcataaggtaagtagccttttcagattgccttctttcacatggcaacatgcattgca-------gttttctgtatggctttttgtggctgtatagtt--tgtcattttagcgctgaacactattccgtcgtctgagtgttccgtacg------------tcccctgctgaaggacatcgtggttgcttccaagttttggc----------------------aattatgaataaggctgctataaacatccacgtacaggtttttgtgtggacaaaaaagttttccgtccctttgggtaaatacccccgagtgtgattgctagactgggtagtaagagaatggtttcatttttgtaagaaactgcc
i calJac3.chr17                C 0 I 3482
e mm10.chr16                    65424179 927 -  98207768 I
e canFam3.chr33                 29060551 669 +  31377067 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M
e panTro4.chr3_GL389630_random     73743 4279 +    103936 I

a score=1144855.000000
s hg38.chr3_KI270935v1_alt        111733 990 +    197351 aaattgcgggcgcctgtggtcccagctgctgaggaggctgaggcaggagaatcgcgtgaacccgggaggcggagcttgcagtgagccgagatcgtgccactgcactccagcctgggcgacagagcc--agactccatctccaaaaaaaaaaaaaaaaaagaaactgccaaattgtcttccaaagtggttgtaccatgttgccttcccaccagcaatgaaggagggttcctg-ttgctccacatcctgaacagcatttgaagttttcagtgctgtggattttgatcattctt------------tttttctttttcttttgagacggggtctcactccattgctcaggctggagtgaaggctggatcgcggctcactgcagcctcaacctcctgggctcaagcaatcctgccatctcagcctccagagtagctgggaccacagtcacatgctaccgtgcccatataattttttaattttttgtagagatgggatcttgctttgttgcccaggctggtctcaaactcctgggctccagtgatcctcctgcttcagcctcccaaagtgctgggagtacaggtgtgagccacagtgcctggtgactgtggtcattctaacaggtgtgtattgAGTACAGTTGTGAGCCACGATGCCTGGCgattgtggtcattctaacgggtgtgcatgggtttcgcgttgtttgcggttccctaatgacatacgatgttgaacatctttgtagatgcttatgtgccatgtgaatgtcttctttgg---tgatatgtatgttcagtttttttacccatttaaaaaactgggttgttcattttcttattgttgagttgtaagagttatttgtatatttaattaattaattaa---tattttttgagacagagtctcactctgttgcccaggctggagtgcagtggcgcgatctcagttcactgcaatctccgcctcctgggttcaagtgattatcctgcctcagcctcccgagtagctgggattac
s nomLeu3.chr11                120848331 984 + 123690457 aaattgcgggcacctgtggtcccagctactcaggaggctgaggcaggagaatcgtgtgaacttgagaggcggagcttgcagtgagccaagattgtgccactacactccagcctgggcgacaaaagcggagactccatctccaaaaaaaagaaaaaaac--aaactgccaaattgtcttccagagtggttgtaccatgctgccttcccaccagcaatgaaggagggttcctgtttgctccacatcccggacagcgtttgaagttttcagtgctgtggatttggatcattctt------------tttttctttttcttttgagacagggtctcactctgttgctcaggctggagtgcaggctggatcatggttcactgcagcctcaacc-cctgggctcaagccatcctctcacctcagcctccagagtagctgggaccacagtcacgtgccaccgtgcccatacaatttttaaattttttgtagagatgggatcttgctttgttgcccaggctggtctcaaactcctgggctccagtgatccgcctgcttcagcctcccaaagtgctgggagcacaggtgtgagccacagtgcctggcgattgtggtcattgtaacgggtgtgtattgagcacagctgtgagctacggtgcctggcgattgtggtcattgtaacaggtgtgtattggtttcacgttgtttgcagttccctaatgacatacgatgttgaatatctttgtagatgcttatgtgccatgtgaatatcttctttggtgatgatatgtatgttcagtttt------------aaaaactgggttattcattttcttattgttgagttgtaagagttatttgtatatttcgttaattaattaatgttattttttgagacagactctcactctgttgcccaggctggcatgcagtgatgtgatctcagctcactgcaacctccacctcccggattcaagtgattatcctgcctcagcctcctgagtagctgggattac
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           21639 936 +    111706 aaattgcgggcacctgtagttccagctactcgggagactgaggcaggagaatcgcgtgaacccaggaggcagagcttgcagtgagccgagatcacgccactgcactccagcctgggtgacagggtg--aaactccgtct-caagaaaaataaaaaaat--aaactaccgaattgtcttccaaagtggttgtaccatgttgccttcccaccggtaatgaaggagagttcttg-ttgctccacatcctgaacagcatttgaagttttcaatgctgtggattttggtcattctt------tttttctttttctttttcttttgagacagggtctcactgtgttgctcaggctggggtacaggctggatcatgcctcactgcagcctcaacctcctgggctcaagcaatcctcccacctcagcctccagagtagctgggaccacagtcacctgctaccatgctcatataattttttaatattttgtagagatgggatcttgctttgttgcccagactggtctcaaactcctgggctcaagtcatcctccagcatcagtctcccaaagtgctgggagtacaggtgtgagccacaatgcctggcaattgtggtcattctaacaggtgtgtatt----------------------------------------------------------ggttgtgcgatgtttgcagttccctaaggacat--gatgttgaacgtctttttagatgcttatgtgccatgtgaataccttctttgg---tgatatgtatgttcagtttttttacccatttaaaaaattgggttgttcattttcttattgttgagttgtaagagttatttgtatatttaattaattaaatattattattttttgagacagaatctcactcttttgcctaggctcccgcgcagaggtgaaatctcagttcactgcaatctccgcctcccgggttcaagcgattctcctgcctcggccttccgagtagctgggattac
i rheMac3.chrUn_JH291127       C 0 I 7
s macFas5.chr2                     56963 936 + 192460366 aaattgcgggcacctgtagttccagctactcgggagactgaggcaggagaatcgcgtgaacccaggaggcagagcttgcagtgagccgagatcacgccactgcactccagcctgggtgacagggtg--aaactccgtct-caagaaaaataaaaaaat--aaactaccgaattgtcttccaaagtggttgtaccatgttgccttcccaccagtaatgaaggagggttcttg-ttgctccacatcctgaacagcatttgaagttttcaatgctgtggattttggtcattctt------tttttctttttctttttcttttgagacagggtctcactgtgttgctcaggctggggtacaggctggatcatgcctcactgcagcctcaacctcctgggctcaagcaatcctcccacctcagcctccagagtagctgggaccacagtcacctgctaccatgctcatataattttttaatattttgtagagatgggatcttgctttgttgcccagactggtctcaaactcctgggctcaagtcatcctcctgcttcagtctcccaaagtgctgggagtacaggtgtgagccacaatgcctggcaattgtggtcattctaacaggtgtgtatt----------------------------------------------------------ggttgtgcgatgtttgcagttccctaaggacat--gatgttgaacgtctttttagatgcttatgtgccatatgaataccttctttgg---tgatatgtatgttcagtttttttacccatttaaaaaattgggttgttcattttcttattgttgagttgtaagagttatttgtatatttaattaattaaatattattattttttgagacagaatctcactcttttgcctaggctgacgtgcagtggtgcaatctcagttcactgcaatctccgcctcccgggttcaagcgattctcctgcctcggccttccgagtagctgggattac
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     52644 936 - 187378091 aaattgcgggcacctgtagttccagctactcgggagactgaggcaggagaatcgcgtgaacccaggaggcagggcttgcagtgagccgagatcacgccactgcactccagcctgggtgacagagtg--aaactccgtct-caagaaaaataaaaaaat--aaactaccgaattgtcttccaaagtggttgtccCATGTTGCCTTCCCACCAGTAATGAAGGAgggttcctg-ttgctccacatcctgaACAGCATTTGAAGTTTTCAGTGCTGTGGATTTtggtcattctt------tttttctttttctttttcttttgagacagggtctcactgtgttgctcaggctggggtacaggctggatcatgcctcactgcagcctcaacctcctgggctcaagcaatcctcccacctcagcctctggagtagctgggaccacagtcacctGCTACCAtgctcatataattttttaatattttgtagagatgggatcttgctttgttgcccagactggtctcaaactcctgggctcaagtcatcctcctgcttcagtctcccaaagtgctgggagtacaggtgtgagccacaatgcctggcaatTGTggtcattctaacaggtgtgtatT----------------------------------------------------------GGTTGTGCGATGTTTGCAGTTCCTTAATGACAT--GATGTTGAACGCCTTTTTAGATGCTTATGTGCCATGTGAATACCTTCTTTGG---TGATATGTATGTTCAGtttttttacccatttaaaaaattgggttgttcattttcttattgttgagttgtaagagttatttgtatatttaattaattaaatattattattttttgagacagaatctcactcttttgcctaggctgacgtgcaggggtgcaatctcagttcactgcaatctccgcctcccggattcaagcgattctcctgcctcggccttctgagtagctgggattac
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   404303 937 -  91754291 aaattgtgggcacctgtagttccagctactcgggagactgaggcaggagaatcgcgtgaacccaggagccagagcttgcagtgagccgagatcacgccactgcactccagcctgggtgacagagtg--aaactccgtct-caagaaaaataaaaaaat--aaactaccgaattgtcttccaaagtggttgtaccatgttgccttcccaccagtaatgaaggagggttcctg-ttgctccacatcctgaacagcatttgaagttttcagtgctgtggattttggtcaTTCTTtttttctttttctttttctttttcttttgagacagggtctcactgtgttgctcaggctggggtataggctggatcatgcctcactgcagcctcaacctcctgggctcaagcaatcctcccacctcagcctccggagtagctgggaccacagtcacctgctaccatgctcatataattttttaatattttgtagagatgggatcttgctttgttgcccagactggtctcaaactcctgggctcaagtcatcctcctgcttcagtctcccaaagtgctgggagtacaggtgtgagccacaatgcctggcaattgcggtcattctaacaggtgtgtatt----------------------------------------------------------ggttgtgcgatgtttgcagttcccta-----at--gatgttgaacgtctttttagatgcttatgtgccatgtgaataccttctttgg---tgatatgtatgttcaggttttttacccatttaaaaaattgggttgttcattttcttattgttgagttgtaagagttatttgtatatttaattaattaaatattattattttttgagacagaatctcactcttttgcctaggctgacgtgcagtggtgcaatctcagttcactgcaatctccgcctcccaggttcaagcgattctcctgcctcggccttctgagtagctgggattac
i chlSab2.chr15                C 0 I 7
e mm10.chr16                    65424179 927 -  98207768 I
e canFam3.chr33                 29060551 669 +  31377067 I
e calJac3.chr17                   920761 3482 -  74750902 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M
e panTro4.chr3_GL389630_random     73743 4279 +    103936 I

a score=31.000000
s hg38.chr3_KI270935v1_alt        112723 25 +    197351 tactactggtagtagtaatggcgcc
s nomLeu3.chr11                120849315  7 + 123690457 ------------------aggcgtc
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     57899  7 + 192460366 ------------------aggcatg
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     53580  7 - 187378091 ------------------aggcatg
i papAnu2.chr2                 C 0 C 0
e rheMac3.chrUn_JH291127           22575  7 +    111706 I
e mm10.chr16                    65424179 927 -  98207768 I
e canFam3.chr33                 29060551 669 +  31377067 I
e calJac3.chr17                   920761 3482 -  74750902 I
e chlSab2.chr15                   405240  7 -  91754291 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M
e panTro4.chr3_GL389630_random     73743 4279 +    103936 I

a score=324758.000000
s hg38.chr3_KI270935v1_alt        112748 246 +    197351 cgccaccacacccagctaatttttgtatttttagtagagacagggtttcaccatgttggccaggctggtctccaacgcctgacctcaattgatccgcttacctcagcctcccaaagtgctgggatttcaggtctgagccagtgcacccggctctttgtata-ttttagataaaagtctttaatcagatgggacttttgcaaatattttcattctcttgccattgcctttcacagagaagaagttttt
s nomLeu3.chr11                120849322 246 + 123690457 cgccaccacacccagctaatttttgtatttttagtagagacagggtttcaacatgttggccaggctggtctcaaatgcctgacctcaagtgatccgcctacctcagcctcccaaagtgctgagatttcaggtctgagccagtgcacctggctctttgtata-ttttagataacagtctttaatcagatgagacttttgcaaatattttcattttcttgccattgcctttcacagagaagaagttttt
i nomLeu3.chr11                C 0 I 2287
s rheMac3.chrUn_JH291127           22582 247 +    111706 caccaccacacccagctaatttttgtatttttaatagagacagggtttccccatgttggccaggctgttctcaaatgcctgacctcaagtgatccgcctacctcagcctcccaaagtgctgggatttcaggtgtgagccagtgcacctggctctttgtgtatttttagataacagtctttaatcagatgggacttttgcaaatattttcattctcttgccattgtctttcacagagaggaagttttt
i rheMac3.chrUn_JH291127       I 7 C 0
s macFas5.chr2                     57906 247 + 192460366 caccaccacacccagctaatttttgtatttttaatagagacagggtttccccatgttggccaggctgttctcaaatgcctgacctcaagtgatccgcctacctcagcctcccaaagtgctgggatttcaggtgtgagccagtgcacctggctctttgtgtatttttagataacagtctttaatcagatgggacttttgcaaatattttcattctcttgccattgtctttcacagagaggaagttttt
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     53587 247 - 187378091 caccaccacacccagctaatttttgtgtttttaatagagacagggtttccccatgttggccaggctgttctcaaacgcctgacctcaagtgatctgcctacctcagcctcccaaagtgctgggatttcaggtctgagccagtgcacctggctctttgtgtatttttagatAACAGTCTTTAATCAGATGGGACTTCTGcatatattttcattctcttgccATTGTCTTTCACAGAGAGGTAGTTTTT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   405247 247 -  91754291 caccaccacacccagctaatttttgtatttttaatagagacagggtttccccatgttggccaggctgttctcaaacgcctgacctcaagtgatccgcctacctcagcctcccaaagtgctgggatttcaggtctgagccagtgcacctggctctttgtgtatttttagataacagtctttaatcagatgggacttttgcaaatattttcattctcttgccattgtctttcacagagaggaagttttt
i chlSab2.chr15                I 7 C 0
e mm10.chr16                    65424179 927 -  98207768 I
e canFam3.chr33                 29060551 669 +  31377067 I
e calJac3.chr17                   920761 3482 -  74750902 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M
e panTro4.chr3_GL389630_random     73743 4279 +    103936 I

a score=273300.000000
s hg38.chr3_KI270935v1_alt        112994 365 +    197351 aatgttaatgaagttcagctcatcaattatttccttcatggatcatgcccttgctattgtatctaaaatgtcatcaccatactcaaggtcatttagattttctcctatattatcttctgggagtcttacagt------tttgcattttattgaggtttatgattcattttgagtttttatgaaaggtataaggtctgtgtctagatttttttttttttttttttttttttttttttttttttgcttgtggatgtccggttgtcccagcgtcatttattgaaaacactatctctgctccattgtgtggcctctgctgctttgtcaaagatcagttgacacatttatacaggtctattagaaatattactttt
s rheMac3.chrUn_JH291127           22829 354 +    111706 aatgttaatgaagttcagctcatcaattatttccttcatggatcatgcccttggtattgtatctaagaagtcatcaccatccccaaggtcatttagattttctcctatgttattttcttgg-gtctttcagtttttcattttcattttattgaggtttatgattcattctgagtttttatgaaaggtataaggtctgtgtctatatataaatatattta----------------tttttttgcatgtgaatgtccagttgtcccagtatcgtttgttgtaaacactatctctgctccattgcatagcctctgctcctttgtcaaagatcagttgacacatttatacaggtcgattagaaatattactttt
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     58153 355 + 192460366 aatgttaatgaagttcagctcatcaattatttccttcatggatcatgcccttggtattgtatctaaaaagtcatcaccatccccaaggtcatttagattttctcctatgttatcttcttgg-gtctttcagtttttcattttcattttattgaggtttatgattcattctgagtttttatgaaaggtataaggtctgtgtctatatataaatatattta---------------ttttttttgcatgtgaatgtccagttgtcccagtatcgtttgttgtaaacactatctctgctccattgcatagcctctgctcctttgtcaaagatcagttgacacatttatacaggtcgattagaaatattactttt
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     53834 328 - 187378091 AATGTTAATGAAGTTCAGCTCATCAATTATTTCCTTCATGGATCATGCCCTTGGTAtcgtatctaaaaagtcatcaccatctCCAAGGTCatttagattttctcctatgttatcttcttgg-gtctttcagtttttcattttcattttattgaggtttatgattcattctgagtttttATGAAAGGTATAAAGTCTgtgtctatatataaatatattta---------------tttcttttgcgtGTGAATGTCCAGTTG---CAGAG------------------------GCTCCATTGCATAGCCtctgctcctttgtcaaagatcagttgacacATTTATACAGGTCTATTAGAAATAttactttt
i papAnu2.chr2                 C 0 I 1913
s chlSab2.chr15                   405494 353 -  91754291 aatgttaatgaagttcagctcatcaattatttcctgcatggatcatgcccttggtatcgtatctaaaaagtcatcaccatctcccaggtcatttagattttctcctatgttatcttcttgg-gtctttcagtttttcattttcattttattgaggtttatgattcattctgagtttttatgaaaggtataaggtctgtgtctatatataaatatattta-----------------ttttttgcgtgtgaatgtccagttgtcccagtatcgtttgttgaaaacactatctctgctccatggcatggcctctgctcctttgtcaaagatcagttgacacatgtatacaggccgattagaaatattactttt
i chlSab2.chr15                C 0 C 0
e mm10.chr16                    65424179 927 -  98207768 I
e canFam3.chr33                 29060551 669 +  31377067 I
e calJac3.chr17                   920761 3482 -  74750902 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M
e nomLeu3.chr11                120849568 2287 + 123690457 I
e panTro4.chr3_GL389630_random     73743 4279 +    103936 I

a score=65514.000000
s hg38.chr3_KI270935v1_alt        113359 120 +    197351 aatattctgggctctctattctgttccattgatctatttgtctattcttttgccagtatcatgctgctttcatgactatagctttagagtaagccttgaagtcaggtggtatcagtcctc
s rheMac3.chrUn_JH291127           23183 120 +    111706 aatattctgggctctctattctgtcccattgatctatttgtctattcttttgccagtatcatgcggttttcatgactatagctttagagtaagccttgaagtcaggtgatatcagtcctc
i rheMac3.chrUn_JH291127       C 0 I 461
s macFas5.chr2                     58508 120 + 192460366 aatattctgggctctctattctgtcccattgatctatttgtctattcttttgccagtatcatgcggttttcatgactatagctttagagtaagccttgaagtcaggtgatatcagtcctc
i macFas5.chr2                 C 0 C 0
s chlSab2.chr15                   405847 120 -  91754291 aatattctgggctctctgttctgttccattgatctatttgtctattcttttgccagtatcatgcagttttcatgactatagctttagagtaagccttgaagtcaggtgatatcagtcctc
i chlSab2.chr15                C 0 C 0
e mm10.chr16                    65424179 927 -  98207768 I
e canFam3.chr33                 29060551 669 +  31377067 I
e calJac3.chr17                   920761 3482 -  74750902 I
e papAnu2.chr2                     54162 1913 - 187378091 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M
e nomLeu3.chr11                120849568 2287 + 123690457 I
e panTro4.chr3_GL389630_random     73743 4279 +    103936 I

a score=2025.000000
s hg38.chr3_KI270935v1_alt        113479 12 +    197351 tgaccattctcc
s macFas5.chr2                     58628 12 + 192460366 caactgttcgcc
i macFas5.chr2                 C 0 I 449
s chlSab2.chr15                   405967 12 -  91754291 cgactgttctcc
i chlSab2.chr15                C 0 C 0
e rheMac3.chrUn_JH291127           23303 461 +    111706 I
e mm10.chr16                    65424179 927 -  98207768 I
e canFam3.chr33                 29060551 669 +  31377067 I
e calJac3.chr17                   920761 3482 -  74750902 I
e papAnu2.chr2                     54162 1913 - 187378091 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M
e nomLeu3.chr11                120849568 2287 + 123690457 I
e panTro4.chr3_GL389630_random     73743 4279 +    103936 I

a score=81750.000000
s hg38.chr3_KI270935v1_alt        113491 1047 +    197351 atcaatattgatttggctattttggatcttttgcctctccacataaactttagagccagtttatccatatctacaaataacttcctgggattttgattaagattgtgtcattatgtagaatctgtagatcaagttggctatcttgatctgctgctatcttgataatattgagaactgctatcttaataatattgagtcttctggcctgttgtgctggcgcacacctataatcccagcactttgggatgccgaggagggtggatcacctgaggtcaggagtttgagatcagcctggccaaaatgccgaaaccctatctctactaaaaatacaaaaaaaaattagccaggcgtggtggtgtgtgcctgtaatcccagctactcatgaggctgaggcaagagaattgcttgaacccgggaggctgaggttgcagtgagctgagatggtgccactgcactccagcctgggtgacagagggagactccatctcaaaaaaaaaaaaaaaaaa----gagtcttcctgttcataaacatagaatgtcatcccatttatgaagttctttgatatctttcatcagagttttatagtttttctcatatagatcttgtacatattttgttacatttacacctcagtatttcattttgggggatgctaatgtaaatggtcatatgtatttaattttattattcatttttc-tttttttgtttcctgtcttgctcaaatatttttaattctaaattccaattgttctttgctggcacacacgaaagctgttgacgttaggacactaaccttatatcatgaaacttgtctgaaattgcttctttgttctggggttttttccttttgtcaactcttagatttttttacatagatgattgtgtcatctgtgaac-aaagcagttttgtttcttcctttttattctgtataccttttatttcccttttgtgtctagttgcattggccaagacctccagcaggatgttgagaatcgatggtgagaggggacgttcttgccttgttactaatcttaggggaaagcatctaat
s chlSab2.chr15                   405979 1016 -  91754291 atcaatactgagttggctattttggatcttttgcctctccacataaactttagagccagtttatcaatctctacaaataacttcctgggattttgattaagattgtgttattatgtacaatctgtagatcaagttggctatcttgatctgttgctatcttgataatattgagaactgctatcttaataatactgagtcttctggcctggcgcagtggctcacacctataatcccagcactttgggaggccaaggcaggtggatcacctgaggtcaggagtttgagatcagcctggccaaaatgttgaaaccctgtctctactaaaaatac--aaaaaaactagctaggcatggtgatgtgtacctgtaatcccagct--------------------------------acctgggaggctgaggttgcagtgagctgagatggcgccattgcactccagcctgggtgacagagggagactccgtctcaaaaataaaataaaataaatttgaatcttcctgtccataaacatagaatgtcatcccatttatgaagttctttgatatctttcatcagagttttatagtttttctcatatagatcttgtacatattttgttacatttatacctcagtatttcattttgggggatgctaatgtaaatggtaatgtgtatttaattttaTTATTAGTTTTTCTTTTTTTTGCTTCCTATCTTGCTCAAAtgtttttaattctaaattccaattgttctttgctggcacacacgaaagccattgacgctgggacactaaccttacatcatgaaacttggctgaaattgcttctttgttctggggttttttccttttgtcaactcttagatttttttacatagatgattgtgtcatctgtgaacaaaaacagttttatttcttcctttttattctgtataccttttatttcccttttgtgtcttgttgcattggccaagacctccagtatgatgttgaaaat---tggtaggaggggacatcctggccttcttcctcatcttaggggaaagcatctagt
i chlSab2.chr15                C 0 C 0
e rheMac3.chrUn_JH291127           23303  461 +    111706 I
e mm10.chr16                    65424179  927 -  98207768 I
e canFam3.chr33                 29060551  669 +  31377067 I
e calJac3.chr17                   920761 3482 -  74750902 I
e macFas5.chr2                     58640  449 + 192460366 I
e papAnu2.chr2                     54162 1913 - 187378091 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M
e nomLeu3.chr11                120849568 2287 + 123690457 I
e panTro4.chr3_GL389630_random     73743 4279 +    103936 I

a score=14629.000000
s hg38.chr3_KI270935v1_alt        114538 56 +    197351 ttctcaccgttaaggatgatgttagctgtaggtttttgtagatattcttttattta
s panTro4.chr3_GL389630_random     78022 56 +    103936 ttctcaccgttaaggatgatgttagctgtaggtttttgtagatattcttttattta
i panTro4.chr3_GL389630_random I 4279 C 0
s chlSab2.chr15                   406995 56 -  91754291 ttctcaccattaaggatgatgttagcagttggtttttgtagatattcttttattta
i chlSab2.chr15                C 0 C 0
e rheMac3.chrUn_JH291127           23303 461 +    111706 I
e mm10.chr16                    65424179 927 -  98207768 I
e canFam3.chr33                 29060551 669 +  31377067 I
e calJac3.chr17                   920761 3482 -  74750902 I
e macFas5.chr2                     58640 449 + 192460366 I
e papAnu2.chr2                     54162 1913 - 187378091 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M
e nomLeu3.chr11                120849568 2287 + 123690457 I

a score=128646.000000
s hg38.chr3_KI270935v1_alt        114594 293 +    197351 tttatttatttatttattttttgagacagagtctcactctgtcacccaggctggagtgcagtggtgtgatctcggctcactgcaatctccgcctcctgggttcacaccattctcctgcctcagcctcccaagcagctgggactacaggcgcccaccaccacgcccagctaattttttgtgtttttagtagagatggggtttcaccgtgttagccaggatggtctcgatctcctgaactcgtgatccgcctgcctcggcctcccaaagtgctgggattacagacgtgagccacc
s panTro4.chr3_GL389630_random     78078 290 +    103936 tttatttattttttt---ttttgagacagagtctcactctgtcacccaggctggagtgcagtggtgtgatctcggctcactgcaatctccacctcctgggttcacgccattctcctgcctcagcctcccaagcagctgggactacaggcgcccaccaccacgcccagctaattttttgtgtttttagtagagacggggtttcaccgtgttagccaggatagtctcgatctcccgacctcgtgatccgcccacctcggcctcccaaagtgctgggattacagacgtgagccacc
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120851855 293 + 123690457 tttcttcttctttttttttcttgagacggagtctcgctctgtcgcccagcctggagtgcagtggcacgatctcagctccctgcaatctccacctcctgggttcacgccattctcctgcctcagcctcccaagtagttgggactacaggtgcccgccaccacgcccagctaattttttgtgtttttagtagagacagggtttcaccgtgttagccaggatggtcttgatctcctgacctcgtgatccacctgcctcaacctcccaaagtgctgggattacaggcgtaagccacc
i nomLeu3.chr11                I 2287 C 0
s chlSab2.chr15                   407051 279 -  91754291 ----tttgtctattt--------agacagagtctcactctgtcgcccaggctggaatgcag-ggtgcgttctcagctcactgcaaccttcgcctctcgggttcaagcaattctcctgcctcagcctcccgagtagctgggactacaggcgctgaccaccatgcctggct-actccttgtatttttaatagagacagggtttcaccatattggccaggctggtcttgaattcctaaccttgtgattcgcccgcctcagccttccaaagtgctgggattataggcatgagccacc
i chlSab2.chr15                C 0 I 203
e rheMac3.chrUn_JH291127           23303 461 +    111706 I
e mm10.chr16                    65424179 927 -  98207768 I
e canFam3.chr33                 29060551 669 +  31377067 I
e calJac3.chr17                   920761 3482 -  74750902 I
e macFas5.chr2                     58640 449 + 192460366 I
e papAnu2.chr2                     54162 1913 - 187378091 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=2225.000000
s hg38.chr3_KI270935v1_alt        114887 11 +    197351 atgcctggccg
s panTro4.chr3_GL389630_random     78368 11 +    103936 acgcctggccg
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120852148 11 + 123690457 gtgcccagccg
i nomLeu3.chr11                C 0 C 0
e rheMac3.chrUn_JH291127           23303 461 +    111706 I
e mm10.chr16                    65424179 927 -  98207768 I
e canFam3.chr33                 29060551 669 +  31377067 I
e calJac3.chr17                   920761 3482 -  74750902 I
e chlSab2.chr15                   407330 203 -  91754291 I
e macFas5.chr2                     58640 449 + 192460366 I
e papAnu2.chr2                     54162 1913 - 187378091 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=4137.000000
s hg38.chr3_KI270935v1_alt        114898 8 +    197351 atcatgtg
s panTro4.chr3_GL389630_random     78379 8 +    103936 atcatgtg
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120852159 8 + 123690457 atcatgtg
i nomLeu3.chr11                C 0 C 0
s canFam3.chr33                 29061220 8 +  31377067 atcatatg
i canFam3.chr33                I 669 C 0
e rheMac3.chrUn_JH291127           23303 461 +    111706 I
e mm10.chr16                    65424179 927 -  98207768 I
e calJac3.chr17                   920761 3482 -  74750902 I
e chlSab2.chr15                   407330 203 -  91754291 I
e macFas5.chr2                     58640 449 + 192460366 I
e papAnu2.chr2                     54162 1913 - 187378091 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=208132.000000
s hg38.chr3_KI270935v1_alt        114906 93 +    197351 atttttcttctctagcctgttgatgtaacggattgcattagctgatttttgaatattgaaccagtcttgcatacctgggataaatctctgttg
s panTro4.chr3_GL389630_random     78387 93 +    103936 atttttcttctctagcctgttgatgtaatggattgcattagctgatttttgaatattgaaccagtcttgcatacctgggataaatctctgttg
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120852167 93 + 123690457 atttttcttctctagcctgttgatgtcacggattgcattagctgatttttgaatagtgaactagtcttgcatacctgggataaatccctgttg
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           23764 93 +    111706 atttttcttctctagcttgttgatgtaacagattacattagctgatttttgaatattgaaccagtcttgcatacctgggataaatccctattg
i rheMac3.chrUn_JH291127       I 461 C 0
s macFas5.chr2                     59089 93 + 192460366 atttttcttctctagcttgttgatgtaacagattacattagctgatttttgaatattgaaccagtcttgcatacctgggataaatccctattg
i macFas5.chr2                 I 449 C 0
s papAnu2.chr2                     56075 93 - 187378091 atttttcttctctagctTGTTGATGTAACAGATTACATTAgctgatttttgaatattgaaccagtcttgcatacctgggataaatccctGTTG
i papAnu2.chr2                 I 1913 C 0
s chlSab2.chr15                   407533 93 -  91754291 atttttcttctctagtttgttgatgtaacagattacattagctgatttttgaatattgaaccagtcttgcatacctgggataaatccctgttg
i chlSab2.chr15                I 203 C 0
s canFam3.chr33                 29061228 92 +  31377067 atttttcttctttattctgttgatgtgatagattgcactaattgattttcgattgttgaatcagccttgca-acctggactaaatgccacttg
i canFam3.chr33                C 0 C 0
e mm10.chr16                    65424179 927 -  98207768 I
e calJac3.chr17                   920761 3482 -  74750902 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=748515.000000
s hg38.chr3_KI270935v1_alt        114999 292 +    197351 gtcatggcctataattctttttacatattgttgaactgtatttgctaatattttgttggtaatttttgcatctatg----tgagatatattggtctatagtc----gtcttgtaatgtctttgtcccgttttggcattagggtgacagtgac------aaatgacttaggaagtattcctcctgcttctatcttctggaaaagattgcagaaaataggtattatttcccctta-aatatctgctaaaattcaccagcgaactcatctgtgctgtgtgcttgctTCTTGATAAATGAATGCTGTGACT
s panTro4.chr3_GL389630_random     78480 292 +    103936 gtcatggcctataattctttttacatattgttgaactgtatttgctaatattttgttggtaatttttgcatctatg----tgagagatattggtctatagtc----gtcttgtaatgtctttgtctggttttggcattagggtgacagtgac------aaatgacttaggaaatattcctcctgcttctatcttctggaaaagattgcagaaaataggtattatttcccctta-aatatttggtaaaattcaccagcgaactcatctgtgctgtgtgcttgctTCTTGATAAATGAATGCTGTGACT
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120852260 292 + 123690457 gtcatggcctataattctttttacatattgttgaactctatttgctaatattttgttggtaatttttgcatctgtg----tgagagatattggtctatagtc----atcttgtaatgtctttgtctggttttggtactagggtgacactgac------aaatgacttaggaagtattcctcctgcttctatcttctggaaaagattgcagaaaataggtattatttcccctta-aatattcggtaaaatgcaccagcgaactcatctgtgctgtgtgcttgcttcttGATAAATGAATGCTGTGACT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           23857 296 +    111706 gtgatggcctataattctttttacgtattgttgaactcaatttgctaatatttggttggtaatttttgcatctatg----tgagagatattggtctatagtcagtcgtcttgtaatggttttgtctggttttggtattagggtgacactgac------aaatgacttaggaagtattcctgctgcttctgtcttctagaaaagattgcagaaaataggtattattttccctta-aatatttggtaaaattcaccagcgaagtcatctatgctgtgtgcttactTCTTGATAAATGAATGTTGTGACT
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     59182 296 + 192460366 gtgatggcctataattctttttacgtattgttgaactcaatttgctaatatttggttggtaatttttgcatctatg----tgagagatattggtctatagtcagtcgtcttgtaatggttttgtctggttttggtattagggtgacactgac------aaatgacttaggaagtattcctgctgcttctgtcttctagaaaagattgcagaaaataggtattattttccctta-aatatttggtaaaattcaccagcgaagtcatctatgctgtgtgcttactTCTTGATAAATGAATGTTGTGACT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     56168 296 - 187378091 GTGATAGCCTATAATTCTTTTTACGTATTGTTGAactcaatttgctaatattttgttggtaatttttgcatctatg----tgagagatattggtctatagtcAGTCGTCTTGtaatgtttttgtctggttttggcattAGGGTGACACTGAC------AAATGACTTAGGAAGTATTCCTCCTGCTTCTGTCTTCCAGAAAAGATTGCAGAAAATAGATATTATTTCCCCTTA-AATATTTGGTTAAATCCACCAGCGAAGTCATGTATGCTGTGTGCTTACTTCTTGATAAATGAATGCTGTGACT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   407626 296 -  91754291 gtgatggcctataattctttttacgtattgttgaactcaatttgctaatattttgttggtaatttttgcatctatg----tgagagatattggtctatagtcagttgtcttgtaatgtttttgtctggttttggtattagggtgacactgac------aaatgacttaggaagtattcctcctgcttctgtcttccagaaaagattatagaaaataggcattatttcccctta-aatatttggtaaaattcaccagctaagtcatctatgttgtgtgcttgctTCTTGATAAATGAATGTTGTGACT
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   924243 282 -  74750902 gtcatggcctataattctttttatatattgttgaacttgatttgctaatattt-gttgctaatttttgcatcttcg----tgacagatactggtctatagtc----ttctggtaacgtctttg----gtttcggtattagggtgacactgac------caatgacttagggggtagtc---ctgcttctgtcttctggaaaagattgcacaaaataggtat--tttctcctta-aatattttgcacaattcaccagcgaacccctctgtgttgtgtgcttAATTCTTGAGAAATGAATGCTGTGACT
i calJac3.chr17                I 3482 C 0
s canFam3.chr33                 29061320 301 +  31377067 ttcatggcatgtaattctttttattcactgttggattttatttgctaatgttttgttgaagatttttgcatctatgttcatgagagatattcctgtagggtt-----tttttttttttttctttctggttttggta-tagggtaacgctggcctcatagactgagttaggaggtattccctctgcttcaatcttctgaaagagattatagagaactgaaagagtctcttcctgcagtgtttggtagaactcaccagtgaatccatttgggctatgtacttAATTCTTGATAAATGAATGCTAGGATT
i canFam3.chr33                C 0 I 127
e mm10.chr16                    65424179 927 -  98207768 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=365689.000000
s hg38.chr3_KI270935v1_alt        115291 140 +    197351 GCAGTTTTGTATGGAGACTTCATTACATTCCACTTTGGGGCATATGAGGGTAAAGCTACAGCTTTGTATGTAGGAGAGTGGCTTCACCTATTG--GGAGAAGTCATTCTCCATGTA--------AGTTTGGAGTCTGCTCAGATCAAAGA
s panTro4.chr3_GL389630_random     78772 140 +    103936 ACAGTTTTGTATGGAGACTTCATTACATTCCACTTTGGGGCATATGAGGGTAAAGCTACAGCTTTGTACATAGGAGAGTGGCTTCACCTATTG--GGAGAAGTCATTCTCCATGTA--------AGTTTGGAGTCTGCTCAGATCAAAGA
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120852552 140 + 123690457 ACGGTTTTGTATGGAGATTCCATTACATTCCACTTTGGGCCATATGAGGGTAAAGCTACAGCTTTGTACATAGGAGAGTGGCTTCACCTATTG--GGAGAAGTCATTCTCCATATA--------AGTTTGGAGTCTGCTCAGATCAAAGT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           24153 148 +    111706 ATGGTTTCGTATGGAGACTTCATTACATTCTACTTTGGGGCATATGAGGGTAAAGCTACAGCTTTGTACATAGGAGAGTGGCATCACCCATTG--GGAGAAGTCATTCTCCATATAACGTAGACAGTTTGGAGTCTGCTCAGATCAAAGA
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     59478 148 + 192460366 ATGGTTTCGTATGGAGACTTCATTACATTCCACTTTGGGGCATATGAGGGTAAAGCTACAGCTTTGTACATAGGAGAGTGGCATCACCTATTG--GGAGAAGTCATTCTCCATATAACGTAGACAGTTTGGAGTCTGCTCAGATCAAAGA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     56464 148 - 187378091 ATGGTTTTGCATGGAGACTTCATTACATTCCACTTTGGGGCATATGAGGGTAAAGCTACAGCTTTGTACATAGGAGAGTGACTTCACCTATTG--GGAGAAGTCATTCTCCATATAACGTAGACAGTTTGGAGTCTGCTCAGATCAaaga
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   407922 148 -  91754291 ATGGTTTTGTATAGAGACTTCATTACATTCCACTTTGGGGCATATGAGGGTAAAGCTACAGCTTTGTACATAGGAGAGTGACTTCACCTATTG--GGAGAAGTCATTCTCCATGTAATGTAGACAGTTTGGAGTCTGCTCAGATCAAAGA
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   924525 147 -  74750902 GTGGTTTTGTATGGAGACTTCATTACATTACACTTTGGGGAGTATGGTGGTAGAGCTACGGCTCTGTACATAAGAGGGTGGCTTTGCCCACTG--GGGGAA-TCCTCCTCCAGATAAAGTGGGCAGTTTGGAGTCTGCTCAGATCAAGGA
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29061748 127 +  31377067 GTGGTTTTATATGGAGGCTTGATTAC-----ACTTTGGGGTGTTTGAGGGTAAAGTCACAACGTTGCATGTATGGGAGGGGCTTCACCTACTGTTAAGAAAAGCAT------------------AGTTTAGGGTCTGCTCAGGTCAGAGA
i canFam3.chr33                I 127 I 13
e mm10.chr16                    65424179 927 -  98207768 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=1268110.000000
s hg38.chr3_KI270935v1_alt        115431 561 +    197351 Ctgtgaaggttaatattgagtgtcaacttgattggactgaaggatgcaacgtattgttcctgggtgtctctctgtgagggtgttggcaatggagactaatatttgaatcagtggactgggagaggcaggctcactctcagtctgggtggacacaatctaatcagctgccagcatagccag-aataaagcaggcagaggaatgtggaagga-ttacactggctaagtcttccagccttcatctttctcccgtgctggatgcttcctgccctcaaacatcggacttccagttcttcagcttttggactcttggacttacactggtggtttgtcaggggctcttgggccttctgccacagacttaaggttacactgtcggcttccctacttttgagatcttgggattcagactagcttccctgcttctcagcttgcagacagcctattgtgg-acctcactttgtgatcgtgtgagtcgatactccttcataaactcccctttatatatacatctatcctattagtcctgaccctctagggaacc----ctaatacaAAGATtatatata-t
s panTro4.chr3_GL389630_random     78912 561 +    103936 Ctgtgaaggttaatattgagcgtcaacttgattggactgaaggatgcaacgtattgttcctgggtgtctctctgtgagggtattggcaacggagactaatatttgaatcagtggactgggagaggcaggctcactctcagtctgggtggacacaatctaatcagctgccagcgtagccag-aataaagcaggcagaggaatgtggaagga-ttacactggctaagtcttccagccttcatctttctcccgtgctggatgcttcctgccctcaaacatcggacttccagttcttcagcttttggactcttggacttacactggtggtttgtcaggggctcttgggccttctgccacagacttaaggctgcactgtcagtttccctacttttgagatcttgggattcagactagcttccctgcttctcagcttgcagacagcctattgtgg-acctcaccttgtgattgtgtgagtcgatactccttcataaactcccctttatatatacctctatcctattagtcctgaccctctagggaacc----ctaatacaAAGATtatatata-t
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120852692 561 + 123690457 Ctgtgaaggttaatattgagcgtcaacttgattggactgaaggatgcaaagtattgttcctgggtgtctctctgtgagggtgttggcaacggagactaatatttgaatcagtggactgggagaggcagactcactctcagtctgggtggacacaatctaatcagctgccagtatagccag-aataaagcaggcagaggaacgtggaagga-ttatactggctaagacttccagccttcatctttctcccatgctggatgcttcctgccctcgaacattggatttccagttcttcagcttttggactcttggacttacactggtggtttgtcaggggctctcgggcctttgaccacagacttaaggctgcactgtcggcttccctacttttgagatcttgggattcagactggcttccctgcttgtcagcttgcagacggcctattgtgg-acctcaccttgtgatcctgtgagtcgatactccttcataaactcccctttatatatacatctatcctattagtcctgaccatctagggaacc----ctaatacaAAGATTTtatata-t
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           24301 565 +    111706 Ctgtgatggttaatattgagtgtcaacctgattggactgaaggacacaaagtattgttcctgggtgtatctctgtgagggtcttggcaacggagactaatatttgaatcagtggactgggagaggcagacccactctcaatctgggtagacacaatctaatcagctgccagtgtagctagaaataaagcaggcagaggaacatggaggga-ttacactggctgagtcttccagccttcatctttcccccgtgctagatgcttcctgccctcgaacatcggacttcaagttcttcagcttttggactcttggacttacactggtggtttgccaggggctctcgggccttcggccacagacttgaggctgcattgtcggcttccgtacttttgagatcttgggattcagactagcttccctgcttctcagcttgcagacggcctattgtgg-acctcaccttgtgattgtgtaagtcgatactccttcataaactcccctttatatatacatctatcctattagtcctgtccctctagggaaccctgactaacacaAAGATCATATGTA--
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     59626 565 + 192460366 Ctgtgatggttaatattgagtgtcaacctgattggactgaaggacacaaagtattgttcctgggtgtatctctgtgagggtcttggcaacggagactaatatttgaatcagtggactgggagaggcagacccactctcaatctgggtagacacaatctaatcagctgccagtgtagctagaaataaagcaggcagaggaacatggaggga-ttacactggctgagtcttccagccttcatctttcccccatgctagatgcttcctgccctcgaacatcggacttcaagttcttcagcttttggactcttggacttacactggtggtttgccaggggctctcgggccttcggccacagacttgaggctgcactgtcggcttccgtacttttgagatcttgggattcagactagcttccctgcttctcagcttgcagacggcctattgtgg-acctcaccttgtgattgtgtgagtcgatactccttcataaactcccctttatatatacatctatcctattagtcctgtccctctagggaaccctgactaacacaAAGATCatatgta--
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     56612 560 - 187378091 ctgtgatggttaatattgagtgtcaacctgattggactgaaggacacaaagtattgttcctgggtgtatctctgtgagggtGTTGGCAACGGAGACTAATATTTGAaccagtggactgggagaggcagacccactctcAATCTGGGTagacacaatctaatcagctgccagtgtagctag-aataaagcaggcagaggaacacgGAAGGA-TTACactggctgagtcttccagccttcatctttcccccgtgctagatgcttcctgccctcgaacatcggacttcaagttcttcagcttttggactcttggacttacaccagtggtttgccaggggctctcggaCCTTTGGCCACAGACTTAAGGCTGcgctgtcggcttccctacttttgagatcTTGGGATTCAGACTAGCTTCCCTGCctctcagcttgcagacggcctattgtgg-acctcaccttgtgatcgtgtgagtcgaTACTCCTtcataaactcccctttatatatacatctatcctatcagtcctgtccctctagggaacc----ctaaTACAAAgatcatatgta--
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   408070 565 -  91754291 Ctgcaatggttaatattgagtgtcaacctgattggactgaaggacacaaagtattgttcctgggtgtatctctgtgagggtgttggcaatggagactaatatttgaatcagtggactgggagaggcagacccactctcaatctgggtagacacaatctaatcagctgccagtgtagctag-aataaagcaggcagaggaacatggaagga-ttacactagctgagtcttccaggcttcatctttcccccgtgctagatgcttcctgccctcgaacatcggatttcaagttcttcagcttttggactctcggacttacaccggtggtttgccaggggctctcaggcctttggccacagacttaaggctgcactgtcggcttccctacttttgagatcttgggattcagactagcttccctgcttctcagcttgcagatggcctattgtgg-acctcaccttgtgatcgtgtgagtcgatactccttcataaactcccctttatatatacatctatcctattagccctgtccctctagggaaccctgactaatacaAAGATCatatgtat-
i chlSab2.chr15                C 0 I 55
s calJac3.chr17                   924672 553 -  74750902 Ctgtgatggctaatagtgagtgtcaacttgattggactg-aggaggcaaagtgttgctcctgggtgta--tctgtgaggctgttgccaatggaggctaatatttgaatcagt-gactgggagaggcagacccaccctgaatctgggtagccacaatcttatcagttgccagcatacctcg-agtaaggcaggcagaggaacatggaaggagttcctcttgctgagtcttccagcc-tcatcatcctcccaggctgggtgcttcctgccctcaaacatcagactccaggttcttcagctgtgggactcttgcacttacacctgcggtttgccaggggcccttgggccctcggccacagactgaaggctgcactatcggcttccctacttctgaggtcttgggattcagaccggcttccttacttcttagcttgcagacagcctgttgtggaacttcaccatatgatcatgtgagtcaatactccttaataaactccccttcgtatacacat-----ctattagtcctgtccctctggagaacc----ctaatacaAAGGCCGTATATA-T
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65424179 927 -  98207768 I
e canFam3.chr33                 29061875  13 +  31377067 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=1471.000000
s hg38.chr3_KI270935v1_alt        115992 47 +    197351 attctttatatatata------------tatatatatatat--------------------------------------tttttttttttttttttt
s panTro4.chr3_GL389630_random     79473 85 +    103936 attctttatatatata------------tatatatatatatatatatatatatatatatatatatatattttttttttttttttttttttttttttt
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120853253 31 + 123690457 a-----tatatatata------------tatatatatataA-------------------------------------------------ttttttt
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           24866 24 +    111706 ----TTTATATATATA------------TACACATACATA---------------------------------------------------------
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     60191 24 + 192460366 ----tttatatatata------------tacacatacata---------------------------------------------------------
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     57172 36 - 187378091 ----tttatatatatatatatatgtgtgtatatatatata---------------------------------------------------------
i papAnu2.chr2                 C 0 C 0
s calJac3.chr17                   925225 17 -  74750902 ---------ATACATA------------TAAAGAGAGA-----------------------------------------------------------
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65424179 927 -  98207768 I
e canFam3.chr33                 29061875 13 +  31377067 I
e chlSab2.chr15                   408635 55 -  91754291 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=701062.000000
s hg38.chr3_KI270935v1_alt        116039 300 +    197351 tttgagacagagtcttgctctgttgcccaggctggagtgcagtggcacaatctcagctcactgcaacctccgcctcctgggttcaagagattctcctgcctcagcctcctgagtagctgggattataggcgtgtgccaccatgcccagcgaatttttgta-ttttagtagagacagggtttcactatgttggccaggctggtctcaaactcctggcctcaagtgatctgcccgccttggcctcccaaaatgttgggattacaggcgtgagccaccgtgcccaaccAAAG---ATATTCCTTTGG
s panTro4.chr3_GL389630_random     79558 300 +    103936 ttagagacagagtcttgctctgttgcccaggctggagtgcagtggcacaatctcagctcactgcaacctccacctcctgggttcaagagattctcctgcctcagcctcctgagtagctgggattataggcgtctgccaccatgcccagcgaatttttgta-ttttagtagagacagggtttcactatgttggccaggctggtctcaaactcctggcctcaagtgatctgcccgccttggcctcccaaagtgttgggattacaggcgtgagccactgtgcccaaccAAAG---ATATTCCTTTGG
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120853284 300 + 123690457 tttgagacagagtcttgctctgtcacccaggctggagtgcagtggcacaatctcagctcactgcaacctccgcctcctgggttcaacagattctcctgcctcagcctcctgagtagctgggattacaggcgtgtgccaccatgcccagtgaatttttgta-ttttagtagagacagggtttcactatgttggccaggctggtttcaaactcctggcctcaagtgatccacccgcctcgacctcccaaagtgttgggattacaggcatgagccgcggtgcccagccAAAG---ATATTCCTTTGG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           24890 301 +    111706 tttgagacagagtcttgctctgtcacccaggctggagtgcagtggcgtgatctcagctcactgcaacctctgcctcctgggttcaagagagtctcctgcctcagcctcctgagtagctgggattacaggcacgtgccaccatgcccagctaatttttgtatttttagtagagacagcatttcaccatgtcggccaagctggtctcaaactcttggcctcaagtgatccgcccgcctcagcctcccaaagtgttgggattacaggcgtaagccactgtgcccaaccAAAG---ATATTCCTTTGG
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     60215 301 + 192460366 tttgagacagagtcttgctctgtcacccaggctggagtgcagtggcatgatctcagctcactgcaacctctgcctcctgggttcaagagattctcctgcctcagcctcctgagtagctgggattacaggcacgtgccaccatgcccagctaatttttgtatttttagtagagacagcatttcaccatgtcggccaagctggtctcaaactcttggcctcaagtgatccgcccgcctcagcctcccaaagtgttgggattacaggcgtaagccactgtgcccaaccAAAG---ATATTCCTTTGG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     57208 301 - 187378091 tttgagacagagtcttgctctgtcacccaggctggagtgcagtgacatgatctcagctcactgcaacctctacctcctgggttcaagagattctcctgcctcagcctcctgagtagctgggattacaggcacgtgcccccacgcccagctaatttttgtatttttagtagagaccgcgtttcaccatgtcggccaagctggtctcaaactcttggcctcaagtgatccgcccgcctcagcctcccaaagtgttgggattacaggcgtgagccactgtgcccaaccaaag---ATATTCCTTTGG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   408690 299 -  91754291 tttgagac--agtcttgctctgtcacccaggctggagtgcagtggcatgatctcagctcactgcaacctccacctcctgggttcaagagattctcctgcctcagcctcctgagtagctgggattacaggcacgtgcccccacgcccagctaatttttgtatttttagtagagacagcgtttcaccatgtcagccaagctggtctcaaactcttggcctcaagtgatccgcccgcctcagcctcccaaagtgttgggactacaggcgtgagccactgtgcccaaccAAAG---ATATTCCTTTGG
i chlSab2.chr15                I 55 C 0
s calJac3.chr17                   925242 300 -  74750902 ---gagagagaggcttgctctgccgcccaggctggagtgcagtggcgtgatcttagctcactgcaacctctacctcccagattcaagagatcctcctgcctctgcctcctgagtagctgggattacaggtgtgcaccaccatgcctggctaatttttgta-ttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcctggcctcaagtggtccgcctgccttggccttccaaagtgttggaattacaggcgtgagccaccgcacccAATCAAAGATCATATTTCTTTGG
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65424179 927 -  98207768 I
e canFam3.chr33                 29061875  13 +  31377067 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=1803472.000000
s hg38.chr3_KI270935v1_alt        116339 677 +    197351 GAGCTTCCTTCAACAGCACTTAcccacccgcaagaatgagcttgaacacctgctttgcaccatgtgacctcctttctgaccccatga-ctacattttattggaccaggcataaacaactgatgtaaattggaccagtcagattctctcttcagggatttgggatttagaactaagaggcagctacctagtttctgcataaagtt----ggaattgagattttctagacacaggaattgtggACCAA-TTGTGTTGGAGTTATTACACCAGATAGGTGTAAAAGTCCCGCCTGCT----GAGAGGATTCTGTGGAAGCTGATCAGGTTGCTGGGG-CAAGTGGAGGCAGGGTAGAGGTGAA--------GGGCTGTGGGATGGAGAACCTCAGAAGACTCCATCTGGGGTCCGGGAAAGGACAGAGA-GGGTATATGAGGGGTCGGGCCCTCCAGATCTAAGGGTGGGGT-GGTGGCATGTTTCTTGAGTTGGTTCCTGGAAAGGGAGCTGAAATGGTTTAATCGCTCTTCCATGAAACGCAGGCGGTGGGGACAGCCACCAGACAGGTAAACACACTGTGCATTGATCCTTTTACGACTTTTGTGAAACTGATGGACAGGCAGGCAGGGAGGGGTCCTGGGAGAG--AGTCTGGGGCACTCCATCTTGGGGTATCTCTTTCGCTCTCCTCCTTAGCGGGC
s panTro4.chr3_GL389630_random     79858 679 +    103936 GAGCTTCCTTCAACAGCACTTAcccacccgcaagaatgagcttgaacacctgctttgcaccatgtgacctcctttctgaccccatga-ctgcattttattggaccaggcataaacaactgatgtaaattggaccagtcagattctctcttcagggatttgggatttagaactaagaggcagctacctagtttctgcataaagtt----ggaattgagattttctagacacaggaattgtggACCAA-TTGTGTTGGAGTTATTACACCAGATAGGTGTAAAAGTCCCACCTGCT----GAGAGGATTCTGTGGAAGCTGATCAGGTTGCTGGGGACAAGTGGAGGCAGGGTAGAGGTGAA--------GGGCTGTGGGATGGAGAACCTCAGAAGACTCCATCTGGGGTCCGGGAAAGGACAGAGAAGGGTATATGAGGGATCGGGTCCTCCAGATCTAAGGGTGGGGT-GGTGGCATGTTTCTTGAGTTGGTTCCTGGAAAGGGAGCTGAAATGGTTTAATCCCTCTTCCATGAAACACAGGCGGTGGGGACAGCCACCAGACAGGAAAACACACTGTGCATTGATCCTTTTACGACTTTTGTGAAATTGATGGACAGGCAGGCAGGGAGGGGTCCTGGGAGAG--GGTCTGGGGCACTCCATCTTGGGGTAACTCTTTCGCTCTCCTCCTTAGCGGGC
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120853584 678 + 123690457 GAGCTTCCTTCAACAGCACTTAcccacccacaagaatgagcttgaacacctgctttgcaccatgtgacctcctttctgaccccatga-ctgcattttattggaccaggcataaacaactgatgtaaattggaccagtcagattctctcttcagggatttggggtttagaactaagaggcagctacctagtttctgcataaagtt----ggaactgaaattttctagacacaggaattgtggACCAA-TTGCGTTGGAGTTATTACACCAGATATGTGTAAAAGTCCCGCCTCCT----GAGAGGATTATGTGGAAGCTGATCAGGTTGCTGGGGACAAGTGGAGGCAGGGTAGAGGTGAA--------GGGCTGTGGGATGGAGAACCTCAGAGGACTCCATCTGGGGTCCGGGAAAGGACAGAGA-AGGTATATTAGGGCTCGGGTCCTCCAGATCTAAGGGTGGGGT-GGTGGCATGTTTCTTGAGCTGGTTCCTGGAAATGGAGCTGAAATGGTTTAATCCCTCTTCCATGAAACACAGGCGGTGGGGACAGCCACCAGACAGGAAAACACACTCTACATTGATCCTTTTACGACTTTTGTGAAATTGATGGACAGGCAGGCAGGGAGGGGTCCTGGGAGAG--AGTCTGGGGCACTCCATCTTGGGGTATCTCTTTCGCTTTCGTCCTTAGCGGGC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           25191 674 +    111706 GAGCTTCCTTCAACAGCACTTAcccacccgcaagagtgagcttgaacacctgctttgcaccatgtgacttcctttctgaccccatga-ctgcattttattggaccaggcataaacaactgatgtaaattggaccagtcagattctctcttcagggatttgggatttagaactaagaggcagctacctagtttctgcataaagtt----ggaattgagattttctagacacaggaattggggACCAA-TGGTGTTGGAGTTGTTACACCAGATAGGTGTAAAAGTCCTGCCTGCT----GAGAGGATTATGTGGAAGCTGATCAGGTTGCCGGGGACAAGTGGAGGCAGGGTAGGGCTGAA--------GGGCTGTGGGATGGAGAACCTCAGAAGACTCCATCTGGGGTCCAGGAAAGGACAGAGA-AGG--TATTAGGGATCGGGTCCTCCAGATCTAAGGGTGGGGT-GGTGGCATGTTTCTTGAGTTGGTTCCTGGAAAGGGAGCTGAAATGGTTTAATCCCTCTTCCATGAAACACAGGCAGTGGGGACAGCCACCAGACAGGAAAACACACTGTACATTGATCCTTTTATGAC-TTTTTGAAATTGATGGACAGGCAGGTGGGGAGGGGTCCTGGGAGAG--AGTCTGGGTCACTCCATCTTGGGGTATCTCTTTCGCCCTCCTCCTTAGAGGG-
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     60516 674 + 192460366 GAGCTTCCTTCAACAGCACTTAcccacccgcaagagtgagcttgaacacctgctttgcaccatgtgacttcctttctgaccccatga-ctgcattttattggaccaggcataaacaactgatgtaaattggaccagtcagattctctcttcagggatttgggatttagaactaagaggcagctacctagtttctgcataaagtt----ggaattgagattttctagacacaggaattggggACCAA-TGGTGTTGGAGTTGTTACACCAGATAGGTGTAAAAGTCCTGCCTGCT----GAGAGGATTATGTGGAAGCTGATCAGGTTGCCGGGGACAAGTGGAGGCAGGGTAGGGCTGAA--------GGGCTGTGGGATGGAGAACCTCAGAAGACTCCATCTGGGGTCCAGGAAAGGACAGAGA-AGG--TATTAGGGATCGGGTCCTCCAGATCTAAGGGTGGGGT-GGTGGCATGTTTCTTGAGTTGGTTCCTGGAAAGGGAGCTGAAATGGTTTAATCCCTCTTCCATGAAACACAGGCGGTGGGGACAGCCACCAGACAGGAAAACACACTGTACATTGATCCTTTTATGAC-TTTTTGAAATTGATGGACAGGCAGGTGGGGAGGGGTCCTGGGAGAG--AGTCTGGGTCACTCCATCTTGGGGTATCTCTTTCGCCCTCCTCCTTAGAGGG-
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     57509 680 - 187378091 GAGCTTCCTTCAACAGCATTTACCCACCCGCAAGAGCGAGCTTGAACACCTGCTTTGCACCATGTGACTTCCTTTCTGACCCCATGA-CTGCATTTTATTGGACCAGGCATAAACAACTGATGTAAATTGGACCAGTCAGATTCTCTTTTCAGGGATTTGGGATTTAGAACTAAGAGGCAGCCACCTAGTTTCTGCATAAAGGTTTGCAGAATTGAGATTTTCTAGACACAGGAATTGGGGACCAA-TGGTGTTGGAGTTGTTACACCAGATAGGTGTAAAAGTCCTGCCTGCT----CAGAGGATTATGTGGAAGCTGATCAGGTTGCTGGGGACAAGTGGAGGCAGGGTAGGGCTGAA--------GGGCTGTGGGATGGAGAACCTCAGAAGACTCCATCTGGGGTCCGGGAAAGGACAGAGA-AGGTATATTAGGGATCGGGTCCTCCAGATCTAAGGGTGGGGT-GGTGGCATGTTTCTTGAGTTGGCTCCTGGAAAGGGAGCTGAAATGGTTTAATCCCTCTTCCATGAAACACAGGCGGTGGGGACAGCCACCAGAGAGGAAAACACACTGTACATTGATCCTTTTATGAC-TTTGTGAAATTGATGGACAGGCAGGTGGGGAGGGGTCCTGGGAGAG--AGTCTGGGGCACTCCATCTTGGGGTATCTCTTTTGCCCTCCTCCTTAGAGGG-
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   408989 688 -  91754291 GAGCTTCCTTCAACAGCGTTTAcccacccgcaagagtgagcttgaacacctgctttgcaccatgtgacttcctttctgaccccatga-ctgcattttattggaccaggcataaacaactgatgtaaattggaccagtcagtttctctcttcagggatttgggatttagaactaagaggcagccacctagtttctgcATAAAGTTTTGCAGAATTGAGATTTTCTAGACACAGGAATTGGGGACCAA-TGGTGTTGGAGTTGTTACAGCAGATAGGTGTAAAAGTCCTGCCTGCT----GAGAGGATTATGTGGAAGCTGATCAGGTTGCTGGGGACAAGTGGAGGCAGGGTAGGGCTGAAGGGCTGTGGGGCTGTGGGATGGAGAACCTCAGAAGACTCCATCTGGGGTCCGGGAAAGGACAGAGA-AGGTATATTAGGGATTGGGTCCTCCAGATCTAAGGGTGGGGT-GGTGGCATGTTTCTTGAGTTGGTTCCTGGAAAGGGAGCTGAAATGGTGTAATCCCTCTTCCATGAAACACAGGCGGTGGGGACAGCCACCAGACAGGAAAACGCACCGTACACTGACCCTTCTATGAC-TTTGTGAAATTGATGGACAGGCAGGTGGGGAGGGGTCCTGGGAGAG--AGTCTGGGGCACTCCATCTTGGGGTATCTCTTTCGCCCTCCTCCTCAGAGGG-
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   925542 658 -  74750902 GTGCTTCCTTC-ACACCACTTACCCACCCACAAGAGTAAGCTTGAACACTGACTTTGCACCACGTGACCTCCTTTCTCACCCCATGA-TTGCATTTTATTGGACCAGGCATAAACAACTGATGTAAATGGGACCAATCAGATTCTGTCTTCAGGGATTTGGGATTTAGAACTAAGAGGCAGCTACCTAGTTTCTGCATGAAGTT----GGAA-TGAGGTTTT------GCAGGAAGTGTGGACCAA-TTGTGTTGGAGTTGTTACACCAGATAGGTGTAGAAGTCCTGCCTGCT----GAGAGGATCATGCGGGAGCTGATCAGGTTGCTGGGGACTAGTAGAGGCAGGGTAGGGCTGAG--------GGGCTGTGGAATGGAGAACCTCAGAACACTCCATCTGGGGTCCCGGAAAGGACGGAGA-AGGCATATTAGGGATCAGGTCCTCCAGATCTAAGGGTGGGTG-GGTGGCACGTTTCTTGAGTTGGTTCCTGGAAAGGGAGCCAAAATGGTTTAATCCCTCTTCCATGAAAGACAGGC-GTGGGGACAGCCACCAGACAGGAAAAC------TGCATTTATCCTTTTACAAC-TTTGTGAAATTGATAGACAAGCAGGCGGGGAGGGGTCCTGGGAGAGACAGTCTGGGGCACTCCATCTTGGGGTATCTCTG------TCCTCCTTAGAGGGT
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29061888 633 +  31377067 GAACTTCCTCCAGCaccacttgctcacccacaagagtgagcctgagcaccaggatcatgtcatgtgacctcctttcctaccctatggtccacacttatttggaccagtgatagacaattgacataagctggactaatcatattctcccctcagggagttgggatttaggagcaagaggcagctctctagtttctccatagaggt----ggaattgaggtattctagacctaggagctgtggACCAGTTTTTGTTGGACTAGTTACACCAGATAGGTGT-GACGTTCTTTCTGCTAGGAGAGAAGATGAGGTGGAAACCGATCATGTGGCTGGGAAT------GGGCAGAGAGGGACCAAG--------GGATCATGGGGTGAAGAGACTCAGAAGGCTCCAG-TGGGGCTCAGGAAAGGACAGAGA-GAGTATATTA-GGATTGTGTGCTCCAGGTCTAAGGAGGGGGTGGGTGGCACGCTTCTCAAATTGGTTCTTGGAAAGGGA--------GGTGTAAGCCCTCCTCCAGGGAACACA----GTGGGAGCAA-GAGCAGATAGGTAAAGGCACTGTGTATTTACCCTCTCGGAAC-TGTT------------------------AGAGGGTGCCCGGGTGAG----TCTGGGCTACTCCATGTGGGGGTGTCTCTACTG---TCCTCCTCAGAAGGC
i canFam3.chr33                I 13 C 0
e mm10.chr16                    65424179 927 -  98207768 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=875065.000000
s hg38.chr3_KI270935v1_alt        117016 369 +    197351 GAAGCTTTGGCC--TGTG----------CTGGGGTGGGGGAAGAAGAAGGTGATGTGGAGCATGAAGCAA------GGTTGGGGTGGAGCAACTGAGGGTTTCCAGCATGGGTAACC---G-GGCTGAT-TAGGACTGGAT----CCAGCTGCCCCTAATGCTCCACTGC-TGCCCAGCACTTAACCTCCACACTCTGTGCCCTCTGATGGTTGGGAGAA--GTCTGTGTCCAGCCCTTCGGCCACCAGAAGAAAATCAAGAATGGAATTCCTGGTTTTGGAGAC-ACAAAAAGTCAGAGAGACTTTATTTAAATAGAG-TTAATTTGAAGTAAACCAGAGAG-TTTTGTGTGCAGAAGCATTTTG---CTTAACTTAGGGCCATCACCACAT-TATGAACTCgt----------g
s panTro4.chr3_GL389630_random     80537 366 +    103936 GAAGCTTTGGCC--TGTG----------CTGGGGTGGGGGAAGAAGAAGGTGATGTGGAGCATGAAGCAA------GGTTGGGGTGGAGCAACTGAGGGTTTCCAGCATGGGTAACC---G-GGCTGAT-TAGGACTGGAT----CCAGCTGCCCCTAATGCTCCACTGCCTGCCCAGCACTTAACCTCCACACGCTGTGCCCTCTGATGGTTGGGAGAA--GCCTGTGTCCAGCCCTTCGGCCACGAGAAGAAAATCAGGAATGGAATTCCTGGTTTTGAAGAC-ACAAAAAGTCAGA----CTTTATTTAAATAGAG-TTGATTTGAAGTAAACCAGAGAG-TTTTGTGTGCAGAAGCATTTTG---CTTAACTTAGGGCCATCACCACAT-TATGAACTCTT----------T
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120854262 364 + 123690457 GAAGCTATGGCC--TGCA----------CTGGGGTAGGG---GAAGAAGGTGATGTGGATTATGAAGCAA------GGTTGGGGTGGAGCAACTGAGGGCTTCCAGCATGGGTGACC---A-GGCTGAT-TAGGACTGGAT----CCAGCTGCCCCTACTGCTCCACCGCCTGCCCAGCACTTAACCTCCACACTCGGTGCCCTCTGATGGTTGGGAGAA--GCCTGTGCCCAGCCCTTCAGCCACCAGAAGAAAATCAGGAATGGAATTCCTGGTTTTGAAGAC-ACAAAAAGTCAGAGAGAC----TTTAAATAGAGTTTAATTTGAAGTAAACCAGAGAG-TTTTGTGTGCAGAAGCATTTTG---CTTAACTTAGGGCCATCACCGCAT-TATGGACTCTT----------T
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           25865 370 +    111706 GAAGCTTTGGCC--TGTG----------CTGGGGTGGGGGAAGAAGAAGATGATGTGGAGCCTGAAGCAA------GGTTAGGGTGGAGCAACTGAGGATTTCCAGCATGGGTGACC---G-GGCTGAT-TAGGACTGGAT----CCAGCTGCCCC-ACTGCTCCACCGCCTGCCCAACACTTAACCTCCACACACTGTGCCCTCGGATGGTTGGGAGAA--GCCTGTGCCCAGCCCTTCGGCCACCAGAAGAAAATCAGGAATAGAATCTCTGGTTTTGAAGAC-ACAAAAAGTTAGACAG-CTTTA-TTAAATAGACTTTAATTCGAAGTAAACCAGAGAG-TTTTGTGTGCAGAAATATTTTG---CTTAACTTAGGGCCATCACTGCAT-TATGAACTCTG--------gtg
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     61190 376 + 192460366 GAAGCTTTGGCC--TGTG----------CTGGGGTGGGGGAAGAAGAAGATGATGTGGAGCCTGAAGCAA------GGTTAGGGTGGAGCAACTGAGGATTTCCAGCATGGGTGACC---G-GGCTGAT-TAGGACTGGAT----CCAGCTGCCCC-ACTGCTCCACCGCCTGCCCAACACTTAACCTCCACACACTGTGCCCTCGGATGGTTGGGAGAA--GCCTGTGCCCAGCCCTTCGGCCACCAGAAGAAAATCAGGAATAGAATCTCTGGTTTTGAAGAC-ACAAAAAGTTAGACAG-CTTTA-TTAAATAGACTTTAATTCGAAGTAAACCAGAGAG-TTTTGTGTGCAGAAATATTTTG---CTTAACTTAGGGCCATCACTGCAT-TATGAACTCTG--gtgtgtgtg
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     58189 373 - 187378091 GAAGCTTTGGCC--tgtg----------ctggggtgggggaagaagaaGATGATGTGGAGCCTGAAGCAA------GGTTAGGGTGGAGCAACTGAGGATTTCCAGCATGGGTGACC---T-GGCTGAT-TAGGACTGGAT----CCAGCTGCCCCTACTGCTCCACTGCCTGTCCAACACTTAACCTCCACACACTGTGCCCTCTGACGGTTTGGAGAA--GCCTGTGCCCAGCCCTTCGGCCACCAGAAGAAAATCAGGAATGGAATCCCTGGTTTTGAAGAC-ACAAAAAGTTAGACAG-CTTTA-TTTAATAGACTTTAATTCGAAGTAAACCAGAGAG-TTTTGTGTGCAGAAATATTTTG---CTTAACTTAGGGCCATCACTGCAT-TATGaactttg------gtgtg
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   409677 376 -  91754291 GAAGCTTTGGCC--TGTG----------CTGGGGTGGGG---GAAGAAGATGATGTGGAGCCTGAAGCAA------GGTTAGGGTGGAGCAACTGAGGATTTCCAGCATGGGTGACC---G-GGCTGAT-TAGGACTGGAT----CCAGCTGCCCCTACTGCTCCACTGCCTGCCCAACACTTAACCTCCACACACTGTGTCCTCGGACGGTTGGGAGAA--GCCTGTGCCCAGTCCTTTGGCCACCAGAAGAAAATCAGGAATGGAATCCCTGGTTTTGAAGAC-ACAAAAAGTTAGACAG-CTTTA-TTAAATAGACTTTAATTCGAAGTAAACCAGAGAG-TTTTGTGTGCAGAATTATTTTG---CTTAACTTAGGGCCATCACTGCAT-TATGAACTCTAgtgtgtgtgtg
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   926200 370 -  74750902 GAAACTTTGGCC--TGTG----------TT-GGGTGGGGGAAGAAGCAGATGATGTGGAGCATGAAGCAA------GGTTGGG--GGAGCAATGGAGGATTTCCAACATGGCTAACC-AAG-GGCTGAC-CAGGGCTGGA-----CCAGCTGCCCCTACTACTCTACCACCTGCCCAACACACCACCTCCACACCCTGCACCCTCT----GTTGGGAGAA--GCCTGTGCCCAGCCCTTTGGCCACCAGAAGAAAATCAGGAATAGAATCCCTGCTTCTGAACACAAAAAAAAGACAGAGGGACTTCATTTAAATAGACTTTAATTAGAAGTAAACCAGAGAA-TTTTATGTGCGGAAGCATTCTG---GTTAACTTAGAGCCATCCCTGCAT-GATGAAATCTG------GCgtg
i calJac3.chr17                C 0 I 112
s mm10.chr16                    65425106 363 -  98207768 GAAGCACTGGCTGAGGTG----------CAGGGCTGGGTGAGAAAGGAG-------GAAGCAAGGACCAA------GCCAGCGTTGTGGCCACCGATG--CAGCAGCATGGGGCAGCCGGG-AGCTGTCGTAGGGCTGGGCTCCACCATCTGAATTTTCCACCCCCCACCCTCCCTAATATGCAACTGTCACA-ACTATGT-TTATGAGGAATGGAAGAACGTGCTGTGCCTAACACTACAGCCACCAGAAG-AAACCTGGTATGGAATCCATAGTT-TGAAGAC-ATAAAAAGATAGAGA--CTTTATTTAAATAGATTTTAATGAGAAGTAAGCCTG-----TGTTATATGTAAAAACATCTTG---GTAAATGTAAAGCCA--GTCACATCCATTAACTCTG----------G
i mm10.chr16                   I 927 C 0
s canFam3.chr33                 29062521 317 +  31377067 CAGGCTTTGGCT--TGCATTTCTTCCCCCTGGGAAGGG----GAAGAAGGTGACGTGGAGGCGGAAGCAAGGACCCGGGTGGGCTGGAGCAAC--AAGCTTCCCAACA-----GACC---GTGGCTGGT-TCCAAC---------CCACCTCTCCCCTCCGCT-----------------------------------------------------------CCCTGTACCTAGCCTGTCAGCCACACAAGGAAAATCACCAGTGGAATTCACAGCTTTGGAAAC-AC--AAAGTCAGAAGGATTTTACTTAAATAGACTTCAACTAGAAGGAAACTGGAGGGTTTTTTTATACAGATGAATTTTGGCTTTTAACTTGGAGCCATCAGCCCAT-TAGTAACTCTG----------A
i canFam3.chr33                C 0 C 0
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=384656.000000
s hg38.chr3_KI270935v1_alt        117385 168 +    197351 tgtgtgtgtgtgtgtgtgCACGCGCG---------CGTGCACAGGCTAGTGTCCT---TCTG-TGGGTGTGTCTGCGTGAGGACCCATCCA--TGCATGTTTGATCTTTATGGCCTCCCCCTG--TGCACCTGCGCCTATGGATAAGGTATAGTCTTGTCTTGATTCCCAGTATTCATTCTCCTT
s panTro4.chr3_GL389630_random     80903 168 +    103936 TGTGTGTGTGTGTGTGTGCACGCGCA---------CGTGCACAGGCTAGTGTCCT---TCTG-TGGGTGTGTCTGCGTGAGGACCCATCCA--TGTATGTTTGATCTTTATGGCCTCCCCCTG--TGCACCTGCGCCTATGGATAAGGTATAGTCTTGTCTTGATTCCCAGTATTCATTCTCCTT
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120854626 158 + 123690457 TGTGTGTGTGTGTGTACGCACGCACG---------CGTGCACAGGCTAGTGTCCT---TCTG-TGGGTGTGTCTGCGTGAGGACCCATCCA--TGCATGTTTGATCTTTATGGCCTCCCCCTG--TGCACCTGTGCCTGTGG----------GTCTTGTCTTGATTCCCAGTATTCATTCTCCTT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           26235 163 +    111706 tgtgtgtgtgtgtatgtgcgcgcatg---------cgtgCACAGGCCAGTGTCCT---TCTG-TGGGGGTGTCTGCGTGAGGACCCCTCCA--CGC----TTG-TCATTATGGCCTCCCCCTG--TGCACCTGAGCCTATGGATAAGGCATAGTCTTGTCTTGAGTCCCAGTATTCACTCCCCTT
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     61566 163 + 192460366 tgtgtgtgtgtgtatgtgCGCGCACG---------CGTGCACAGGCCAGTGTCCT---TCTG-TGGGGGTGTCTGCGTGAGGACCCCTCCA--CGC----TTG-TCATTATGGCCTCCCCCTG--TGCACCTGAGCCTATGGATAAGGCATAGTCTTGTCTTGAGTCCCAGTATTCACTCCCCTT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     58562 167 - 187378091 tgtgtgtgtgtatgtgtgtgtgcacg---------cgtgcacaGGCCAGTGTCCT---TCTG-TGGGGCCGTCTGCGTGAGGACCCCTCCA--CGCTTGTTTG-TCTTTATGGCCTCCCCCTG--TGCACCTGAGCCTATGAATAAGGTATAGTCTTGTCTTGAGTCCCAGTATTCACTCCCCTT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   410053 163 -  91754291 tgtgtgtgtgtgtatgtgCACGCACG---------CGTGCACAGGCCAGTGTCCT---TCTG-TGGGGGTGTCTGCGTGAGGACCCCTCCA--CGC----TTG-TCATTATGGCCTCCCCCTG--TGCACCTGAACCTATGGATAAGGTATAGTCTTGTCTTGAGTCCCAGTATTCACTCCCCTT
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   926682 170 -  74750902 tgtgtgtatgtgtgcatgtgtgcgtg---------cgtgCACAGGCCAGTGTCCTGTGGCTG-TGGGTGTGTCTGTGTGAGGACCCATCCA--TGC-CACTGGATCCTTATGGCCTCCCCATG--TGTCCCTGCGCCTACCCACAAGGCGTAGTCTTGTCTTGATTCCCGGTATTCATTCTCCTT
i calJac3.chr17                I 112 C 0
s mm10.chr16                    65425469 164 -  98207768 TGTGTGTGTGTGTGTATGCACACACAGTCTGCATTCATATATAAGC-AATATCCT---CCTTCCTGATATATCTGTGTAGGAACCCATCCATCTGTATATTTGGCCACCATGGCCTTTTCCTG--TACCCCC-AGTCTACTAAACAGGTAGAGTCTGGTT-----------TATTCACTCTT---
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29062838 135 +  31377067 TGTGTGTGTTTGTGGAT------------------CG-----------GTATCCT-----TG-TGGGTACATCTGTGAGAGAATTCATCCG--GG---------TCTTTATGGCTCCTTCCTGTCTGTCTCTGTATTGACTGAGAAGGTGTGGTCTTGTCTTTATT---ATTATGTATTTCCTT-
i canFam3.chr33                C 0 C 0
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=826136.000000
s hg38.chr3_KI270935v1_alt        117553 355 +    197351 GAAGAATCCTGA-CAGCCTTCAGTCACCTTC----------CCTTTTCCAGTCTCCCAAAAGCAATGGCGCC----TTAAATGTGC-GGTAAGGATGAGGTGAGTCTTGAGGTAGCCTAGGCCACAGCTGCCCCTTCAAGGCAAGGCCTCA----GCT----GAGTTCAGGAAATAGGAGAACCTGGCCCCGG------------AGCAACCCCAGAAGCGCAGGACCACGAACGTCCCGACCCCCAGCAGCAAGAGGCCGCCCAGGGCCCCAAAGAAGATGCCGAAGAACGCGTCGAGTTTCATGCTCAGGTGCTCACAGTGCTCGCCCCAGGCCGTGTAGATGGAGAAGGACACACAGCTGGTGACCAAGAGAGACAGACAGGCG-GTCA
s panTro4.chr3_GL389630_random     81071 355 +    103936 GAAGAATCCTGA-CAGCCTTCAGTCACCTTC----------CCTTTTCCAGTCTCCCAAAAGCAATGGCGCC----TTAAATGTGC-GGTAAGGATGAGGTGAGTCTTGAGGTAGCCTAGGCCACGGCTGCCCCTTCAAGGCAAGGCCTCA----GCT----GAGTTCAGGAAATAGGAGAACCTGGCCCCGG------------AGCAACCCCAGAAGCGCAGGACCACGAACGTCCCGACCCCCAGCAGCAAGAGGCCGCCCAGGGCCCCAAAGAAGATGCCGAAGAACGCGTCGAGTTTCATGCTCAGGTGCTCACAGTGCTCGCCCCAGGCCATGTAGATGGAGAAGGACACACAGCTGGTGACCAAGAGAGACAGACAGGTG-GTCA
i panTro4.chr3_GL389630_random C 0 C 0
s rheMac3.chrUn_JH291127           26398 353 +    111706 GTAGAATCCTGA-CAGCCTTCAGTCACCTTC----------CCTTTTCCAGTCTCCCAAAAGCAATGGCGCC----TTAAGTGTGC-GGTGAGGATGGGGTGGGTCTTGAGGTAGCCTAGACCACAGCTGTCCCTTCAAGGCGAGGCCTCA----GCT----GAGTGCAGGAGATAGGAGAAGCTGGTCCTGG------------AGCAATTCCAGAAGCGCAGGACCACGAACACCCCGACCCCCAGCAGCAAGAGGCCGCCCAGGGACCCAAAGAAGATCCCGAAGAACACGTCGAGTTTCATGCTCAGGTGCTCACAGTGCTCTCCCCAGGCCGTGTAGATGGAGAAGGACACACAGCTGGGGACCGAGAGAG--AGACAGCGT-GTCA
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     61729 353 + 192460366 GTAGAATCCTGA-CAGCCTTCAGTCACCTTC----------CCTTTTCCAGTCTCCCAAAAGCAATGGCGCC----TTAAGTGTGC-GGTGAGGATGGGGTGGGTCTTGAGGTAGCCTAGACCACAGCTGTCCCTTCAAGGCGAGGCCTCA----GCT----GAGTGCAGGAGATAGGAGAAGCTGGTCCTGG------------AGCAATTCCAGAAGCGCAGGACCACGAACACCCCGACCCCCAGCAGCAAGAGGCCGCCCAGGGACCCAAAGAAGATCCCGAAGAACACGTCGAGTTTCATGCTCAGGTGCTCACAGTGCTCTCCCCAGGCCGTGTAGATGGAGAAGGACACACAGCTGGGGACCGAGAGAG--AGACAGCGT-GTCA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     58729 353 - 187378091 GTAGAATCCTGA-CAGCCTTCAGTCACCTTC----------CCTTTTCCAGTCTCCCAAAAGCAATGGCGCC----TTAAGTGTGC-GGTGAGGATGGGGTGGGTCTTGAGGTAGCCTAGGCCACAGCTGTCCCTTCAAGGCGAGGCCTCA----GCT----GAGTGCAGGGGATAGGAGAAGCTGGTCCTGG------------AGCAATTCCAGAAGCGCAGGGCCACGAACACCCCGACCCCCAGCAGCAAGAGGCCGCCCAGGGACCCAAAGAAGATCCCGAAGAACACGTCGAGTTTCATGCTCAGGTGCTCACAGTGCTCTCCCCAGGCCGTGTAGATGGAGAAGGACACACAGCTGGCGACCGAGAGAG--AGACAGCGT-GTCA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   410216 353 -  91754291 GTAGAATCCTGA-CAGCCTTCAGTCACCTTC----------CCTTTTCCAGTCTCCCAAAAGCAATGGCGCC----TTAAGTGTGC-GGTGAGGATGGGGTGGGTCTTGAGGTAGCCTAGGCCACAGCTGTCCCTTCAAGGCGAGGCCTCA----GCT----GAGCGCAGGAGATAGGAGAAGCTGGTCCTGG------------AGCAATTCCAGAAGCGCAGGACCACGAACACCCCGACCCCCAGCAGCAAGAGGCCGCCCAGGGACCCAAAGAAGATCCCAAAGAACGCGTCGAGTTTCATGCTCAGGTGCTCACAGTGCTCTCCCCAGGCCGTGTAGATGGAGAAGGACACACAGCTGGGGACCGAGAGAG--AGACAGCGT-GTCA
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   926852 357 -  74750902 GAAGAATCCCAG-TAGTCTTCAGTCACCTTC----------CCTTTTCCAGTCTCCCAAAAGCAATGGCATC----TTAGGTGTGT-GGTGAGGACGGGGTGGGTCTTAAGGTATCCTAG-TCACAGCTGCCCCTTCAAGGTGAGGCCTCA----GCTTTCCGAGTCCAGAGGGTAGGAGAATCTGGTCCTGG------------AGCAACCCCAGAAGTGCAGGACCACAAACATCCCGAACCCCAGCAGCAAGAGGGCACTGAGGGCCCCAAAGAAGATCCCGAAGAACGCTTTGAGTTTCATGCTCAGGTGCTCACAGCGCTCACCCCAGGCTGTGTAGATGGAGAAGGACACGCAGCTGGGGACCGAGAGAG--AGACAGCGTGGTCA
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65425633 339 -  98207768 GAAG----------AGTCTCAAATCATCTTCATGCCGCAGGCCCTTTCCAGTCCCAC-AGAGCAGGGGCAGA----CTGA----------------GGGATGGGTCCCGAGGT--CCTAGGT-GCAGCTGCCCATCTGGGACAGGGCCTTACAATTCT----GAGTCCAAAGGGTAGGAGAACTTGTTCTTGG------------AGCAGCCGCAGAAGTGAAAGATCATAAATGCTAAGATCCCCAGTAGCAAGAGGGCGCCCAGGGTTCCGAAGAGGATCCCGTAGAATGCCCCAAGTTTCACACTTAGGTGCTCACAGTGTTCGCCCGAGGATGAGTAGATGGTGAAGGATGCGCAGCTGAAGACAGAGAGA---ATGCATTGTGGTCA
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29062973 371 +  31377067 GAAGAATCCTGAGTCACCTTTAAGCACATTT-------------TTCTGAGTCTCCTCAAAGGATCGGTGCCACCTGCAAGTGTGTGGGTGAGGCTGGGGTGGGTCCTGAGGTATCCTAGGTCACAGCTGCCCCTTTGGGGCCAGGCCTCA----GCCTTCTGAGTCCAGGCGGTGGGAGTAGTGGTTCCCGGGGGAGTAGCGCCAGAAGCGCCAGAAGTACAGGACTGCAAACCCCACAGCCCCCAGCAGCAGGAGGATGAACAGGGCTCCAAAGAGGATTCCAAAGAAGGCACTGAGCTTCATGCCCAGATGCTCACAGCGCTCGCCCCAGGGCGTGTAGATGGAGAAAGGCACACAGCTGTGGACAGAGGGA---AGGGACAAG-GTCA
i canFam3.chr33                C 0 C 0
e ponAbe2.chr3                 199759195 20226 + 202140232 M
e nomLeu3.chr11                120854784   0 + 123690457 C

a score=338243.000000
s hg38.chr3_KI270935v1_alt        117908 153 +    197351 -GAGGCGGGAGCTCA----------------------GCCTCCCAGCCCCTCCTCTTCTGCTGGGGAAGA--AGAGGTTCTGTAGGAGAGGCTGGGCTCGCCCCACTCTCCGGAGAGA----CTGAGTCAGCCCTGAGGCCGTGCTGAAGTGAGACCACTGGGCAAAGGAGGCAGGTGTGGG
s panTro4.chr3_GL389630_random     81426 153 +    103936 -GAGGCGGGAGCTCA----------------------GCCTCCCAGCCCCTCCTCTTCTGCTGGGGAAGA--AGAGGTTCTGTAGGAGAGGCTGGGCTTGCCCCACTCTCCGGAGAGA----CTGAGTCAGCCCTGAGGCCGTGCTGAAGTGAGACCACTGGGCAAAGGAGGCAGGCGTGGG
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120854784 153 + 123690457 -GAGGCGGGAGCTCA----------------------GCCTCCCAGCCCCTCCTCTTCTGCTGGGGAAGA--AGAGGTTCTGTAGGAGAGGCTGGGCTCGCCCCACTCTCCAGAGAGA----CTGAGTCAGCCCTGAGGCTGCGCTGAAGTGAGACCACTGGGCAAAGGAGGCAGGTGTGGG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           26751 153 +    111706 -GAGGCGGGAGCTCA----------------------GCCTCCCAGCCCCGCCTCTTCCGCTGGG---GA--AGATGTTCTCTAGGAGAGGCTGGGCTTGCCCCACTCTCCGGAGAGAAAGGGTGAGTCAGCCCTGAGGCCGTTCTGAAGTGAGGCCACTGGGCCAA-GAGGCAGCTGTGGG
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     62082 153 + 192460366 -GAGGCGGGAGCTCA----------------------GCCTCCCAGCCCCGCCTCTTCCGCTGGG---GA--AGATGTTCTCTAGGAGAGGCTGGGCTTGCCCCACTCTCCGGAGAGAAAGGCTGAGTCAGCCCTGAGGCCGTTCTGAAGTGAGGCCACTGGGCCAA-GAGGCAGCTGTGGG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     59082 153 - 187378091 -GAGGCGGgagctca----------------------gcctcccagccccGCCTCTTCCGCTGGG---GA--AGATGTTCTCTAGGAGAGGCTGGGCTCGCCCCACTCTCCGGAGAGAAAGACTGAGTCAGCCCTGAGGCCGTGCTGAAGTGAGGCCACTGGGCAAA-GAGGCAGCTGTGGG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   410569 176 -  91754291 -GAGGCGGGAGCTCAGCCTCCCAGCCCCACCTCTTCCGCCTCCCAGCCCCGCCTCTTCCGCTGGG---GA--AGAGGTTCTCTGGGAGGGGCTGGGCTTGCCCCGCTCTCCGGAGAGAAAGGCTGAGTCAGCCCTGAGGCCGTGCTGAAGTGAGGCCACTGAGCAAAGGAGGCAGCTGTGGG
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   927209 155 -  74750902 -GAGGTGGGTGCTCA----------------------GCCTCCCAGCCTCTCTTCTCCTGCTGGGGCAGA--GGAGGTTCTCTAGGAGAGGCTGGGCTCGCCCCACTCTCTGGAGAGAGAGACTGAGTCAGCCCTGAGGTCATGCTGAA--GAGACCATTGGGCAAAGGAGGCAGGTGTGGG
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65425972 131 -  98207768 -GTGACGAT----------------------------TCCTTCCA------------CTCCTGGG---GACCAGGGGTTATGCAAGACAGGCAGGGCT-------ATCAGCTGGGTGGAGGGTCCAGCCAGCTCTAAGGCCATTTTGAATTGAGGTCACCAATCAAAGGAGGGAGGCATAAC
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29063344 103 +  31377067 GCAGTGGGGAG--------------------------GCCC---------------------------CA--GGAGGTTTCCCTCCACAGGCTGGG--------ACTCTCCTCTGGGGAAG--------------GAGGCAGAACCGAAGTGC--CTACTGGGTAGGGGAGACTGGCAGGGG
i canFam3.chr33                C 0 I 403
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=45316.000000
s hg38.chr3_KI270935v1_alt        118061 21 +    197351 CTTTAAAAACATGGGCCTGgg
s panTro4.chr3_GL389630_random     81579 21 +    103936 CTTTAAAAACATGGGCCTGgg
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120854937 21 + 123690457 CTTTAGAAACCTGGGCCTGgg
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           26904 20 +    111706 CTTTA-AAACATGGGCCTGgg
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     62235 20 + 192460366 CTTTA-AAACATGGGCCTGgg
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     59235 20 - 187378091 CTTTA-AAACATGGGCctggg
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   410745 20 -  91754291 CTTTA-AAACATGGGCCTGgg
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   927364 20 -  74750902 CTTTA-AAATGTGGGTCTAgg
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65426103 19 -  98207768 CTTAA-AAAC-CATGTCTGGG
i mm10.chr16                   C 0 I 363
e canFam3.chr33                 29063447 403 +  31377067 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=4683.000000
s hg38.chr3_KI270935v1_alt        118082 2 +    197351 cc
s panTro4.chr3_GL389630_random     81600 2 +    103936 cc
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120854958 2 + 123690457 cc
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           26924 2 +    111706 cc
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     62255 2 + 192460366 cc
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     59255 2 - 187378091 cc
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   410765 2 -  91754291 cc
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   927384 2 -  74750902 ct
i calJac3.chr17                C 0 I 1
e mm10.chr16                    65426122 363 -  98207768 I
e canFam3.chr33                 29063447 403 +  31377067 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=576888.000000
s hg38.chr3_KI270935v1_alt        118084 332 +    197351 -ggcgcgggggctcacgcctgtaatcccagcacattgagaggctgaggcgggcgcatcacttgaggtcaggggttcgagaccagactggccaacacggtgaaa-ccccatctctactaaaaatac-aaaattagccaggcgtggtggtgcgcacctgtaatcccagctactcaggaggctgaggcagaatcgcttgaacctgggaggtggaggttgcagtgagccgagattgcaacactgcactccagcctgggggacagagcaagactccgtctcaaaaaac-------aaaaacaaaaaCCTGGTGTGAATTCAGCTGCACGTGCAGTCAGCTGCACCTG
s panTro4.chr3_GL389630_random     81602 332 +    103936 -ggcgcgggggctcacgcctgtaatcccagcacattgagaggctgaggcgggcggatcacttgaggtcaggggttcgagaccagactggccaacatggtgaaa-ccccatctctactaaaaatac-aaaattagccaggcgtggtggtgcgcacctgtaatcccagctactcaggaggctgaggcagaatcgcttgaacctgggaggtggaggttgcagtgagcccagattgcaacactgcactccagcctgggggacagagcaagactccgtctcaaaaaac-------aaaaacaaaaaCCTGGTGTGAATTCAGCTGCACGTGCAGTCAGCTGCACCTG
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120854960 340 + 123690457 -ggcgcggggggctcagcctgtaatcccagcacattgagaggctgaggtgggtggattacttgaggtcaggggttcgagaccagactggccaacatggtgaaacccccatctctactaaaaatac-aaaattagccaggcatggtggtgcgcacctgtagtcccagctactcaggaggctgaggcagaatcgcttgaacctgggaggtggaggttgcagtgagccgagattgcaacactgcactccagcctgggggacagagcaagactccgtctcaaaaaacaaaacaaaaaaacaaaaaCCTGGTGTGAATTCAGCTGCATGTGCAGTCAGCTGCACCTG
i nomLeu3.chr11                C 0 M 186
s rheMac3.chrUn_JH291127           26926 331 +    111706 gggcctggtggctcgcgcctggaatcccagcactctgaaaggctgaggcgggcggatcacttgagatcaggagttcaagaccagactggccaacacggtaaaa-ccccatctctactaaaaatacaaaaattagccaggcgtggtggcgcgcacctgtagtcccagctactcgggaggctgaggcagaatcgcttgaacccgggaggcggagcttgcagtgagccgagattgcaacactgcactccagcctgggggacaga--gagaccccgtctc-aaaaac-------aaaaacaaaaaCGTGGAGTGAATTCAGCTGCGCGTGCAGTCAGCTGTGCCTG
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     62257 331 + 192460366 gggcctggtggctcacgcctggaatcccagcactctgaaaggctgaggcgggcggatcacttgagatcaggagttcaagaccagactggccaacacggtaaaa-ccccatctctactaaaaatacaaaaattagccaggcgtggtggcgcgcacctgtagtcccagctactcgggaggctgaggcagaatcgcttgaacccgggaggcggagcttgcagtgagccgagattgcaacactgcactccagcctgggggacaga--gagaccccgtctc-aaaaac-------aaaaacaaaaaCGTGGAGTGAATTCAGCTGCGCGTGCAGTCAGCTGTGCCTG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     59257 331 - 187378091 gggcctggtggctcacgcctggaatcccagcactctgaaaggctgaggcgggcggatcacttgagatcaggagttcaag--cagactggccaacacggtaaaa-ccccatctctactaaaaatacaaaaactagccaggcgtggtggcgggcacctgtagtcccagctactcgggaggctgaggcagaatcgcttgaacccgggaggcggagcttgcagtgagccgagattgcaacactgcactccagcctgggggacagagcgagaccccgtctc-aaaaac-------aaaaacaaaaacgtggAGTGAATTCAGCTGCGCGTGCAGTCAGCTGTGCCTG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   410767 333 -  91754291 gggcctggtggctcacgcctggaatcccagcactttgagaggctgaggcgggcggatcacttgaggtcaggagttcaagaccagactggccaacacggtaaag-ccccatctctactaaaaatacaaaaatgagccaggcgtggtggcgcacacctgtagtgccagctactcgggaggctgaggcagaatcgcttgaacctgggaggtggagcttgcagtgagccgagattgcaacactgcactccagcctgggggacagagcgagactccatctc-aaaaac-------aaaaacaaaaaCGTGGAGTGAATTCAGCTGCGCGTGCAGTCAGCTGCGCCTG
i chlSab2.chr15                C 0 C 0
e mm10.chr16                    65426122 363 -  98207768 I
e canFam3.chr33                 29063447 403 +  31377067 I
e calJac3.chr17                   927386   1 -  74750902 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=22850.000000
s hg38.chr3_KI270935v1_alt        118416 16 +    197351 GGCGGCAGGGATGCCG
s panTro4.chr3_GL389630_random     81934 16 +    103936 GGCAGCAGGGATGCCG
i panTro4.chr3_GL389630_random C 0 C 0
s rheMac3.chrUn_JH291127           27257 16 +    111706 GGCAGCAGGGATGCCG
i rheMac3.chrUn_JH291127       C 0 I 21
s macFas5.chr2                     62588 16 + 192460366 GGCAGCAGGGATGCCG
i macFas5.chr2                 C 0 I 4
s papAnu2.chr2                     59588 16 - 187378091 GGCAGCAGGGATGCCG
i papAnu2.chr2                 C 0 I 4
s chlSab2.chr15                   411100 16 -  91754291 GGCAGCAGGGATGCCG
i chlSab2.chr15                C 0 I 4
e mm10.chr16                    65426122 363 -  98207768 I
e canFam3.chr33                 29063447 403 +  31377067 I
e calJac3.chr17                   927386  1 -  74750902 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M
e nomLeu3.chr11                120855300 186 + 123690457 M

a score=25339.000000
s hg38.chr3_KI270935v1_alt        118432 34 +    197351 GCCACAGGTGGGCATGCGCAGTCACACccccgc-c
s panTro4.chr3_GL389630_random     81950 34 +    103936 GCCACAGGTGGGCACGCGCAGTCACACccccgc-c
i panTro4.chr3_GL389630_random C 0 C 0
s macFas5.chr2                     62608 34 + 192460366 GCCACAAGTGGGCATGCGCAGTCACAGCCCCGCC-
i macFas5.chr2                 I 4 M 425
s papAnu2.chr2                     59608 33 - 187378091 GCCACAAGTGGGCATGCGCAGTCAcagccccgc--
i papAnu2.chr2                 I 4 C 0
s chlSab2.chr15                   411120 33 -  91754291 GCCACAAGTGGGCATGCGCAGTCACAgccccgc--
i chlSab2.chr15                I 4 C 0
e rheMac3.chrUn_JH291127           27273 21 +    111706 I
e mm10.chr16                    65426122 363 -  98207768 I
e canFam3.chr33                 29063447 403 +  31377067 I
e calJac3.chr17                   927386  1 -  74750902 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M
e nomLeu3.chr11                120855300 186 + 123690457 M

a score=26976.000000
s hg38.chr3_KI270935v1_alt        118466 82 +    197351 ccagcccggccccgccccgccccg------cccACCCGGAGAGCCGGgccccgccccacccgcgctccgcccgccccCTCCTTCGGCG
s panTro4.chr3_GL389630_random     81984 88 +    103936 ccagcccggccccgccccgccccgccccgccccgcccGGAGAGCTGGGCCCCGCCCCACCCGCGCTCCGCCCGCCCCCTCCTTCGGCG
i panTro4.chr3_GL389630_random C 0 C 0
s papAnu2.chr2                     59641 68 - 187378091 ----cccggccccgcccctccccg----------cccggagagctgggccccgcccc-----cgccccgcccacccccTTCTTCGGC-
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   411153 64 -  91754291 ----cccggccccg-----ccccg----------cccggagagctgggccccggccc-----cgccccgcccATCCCGTTCTTGGGCG
i chlSab2.chr15                C 0 C 0
e rheMac3.chrUn_JH291127           27273 21 +    111706 I
e mm10.chr16                    65426122 363 -  98207768 I
e canFam3.chr33                 29063447 403 +  31377067 I
e calJac3.chr17                   927386  1 -  74750902 I
e macFas5.chr2                     62642 425 + 192460366 M
e ponAbe2.chr3                 199759195 20226 + 202140232 M
e nomLeu3.chr11                120855300 186 + 123690457 M

a score=101888.000000
s hg38.chr3_KI270935v1_alt        118548 138 +    197351 GGATCTGGAACTGCAGCTGGCGGAGGGCCCGGAGCCCAGGTCTGCGTGGGGCCGCGGCTTCCTGCGCTGTTAACCAGCGGAGCCCCGGGGACTGCTGATGAGGGCAGGGGCAAAGGCGCCTCGCTTGACTGAGGGGCA
s panTro4.chr3_GL389630_random     82072 133 +    103936 GGATCTGGAACTGCAGCTGGCCGAGGGCCCGGAGACCACGCCTGCGTGGGGCCGCGGCTTCCTGTG-----AACCAGCGGAGCCCCGGGGACTGCTGGTGAGGGCAGGGGCAAAGGCGCCTCGCTTGACTGAGGGGCA
i panTro4.chr3_GL389630_random C 0 C 0
s rheMac3.chrUn_JH291127           27294 136 +    111706 GGATCTGGAACTGCAGCTGGCGGAGGGCGCGGAGACCAGGCCTGCGT-GCGCCGCGGCTTCCTGCGCTGTTCACCAGCGGAACCCC-GGGACTGCTGGTGAGGGCAGGGGCAAAGGCGCCTCCCGTGACTGAGGGGCA
i rheMac3.chrUn_JH291127       I 21 C 0
s papAnu2.chr2                     59709 136 - 187378091 GGATCTGGAACCGCAGCAGGCGGAGGGCGCGGAGACCAGGCCTGCGT-GCACCGCGGCTTCCTGCGCTGTTCACCAGCGGAACCCC-GGGACTGCTGGTGAGGGCAGGGGCCGAGGCGCCTCCCGTGACTGCGGGGCA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   411217 135 -  91754291 GGATCTGGAACCGCAGCAGGCGGAGGGCGCGGAGACCAGGCCTGCGT-GCGCTGCGGCTTCCTGCGCTGTTCACCAGCGGGA-CGC-GGGACTGCCGGTGAGGGCAGGGGCAAAGGCGCCGCCCGTGACTGAGGGGCA
i chlSab2.chr15                C 0 C 0
e mm10.chr16                    65426122 363 -  98207768 I
e canFam3.chr33                 29063447 403 +  31377067 I
e calJac3.chr17                   927386   1 -  74750902 I
e macFas5.chr2                     62642 425 + 192460366 M
e ponAbe2.chr3                 199759195 20226 + 202140232 M
e nomLeu3.chr11                120855300 186 + 123690457 M

a score=121010.000000
s hg38.chr3_KI270935v1_alt        118686 97 +    197351 GGACTGG-CCTAGACACAGGACTG--CAGGTTCTTTTCCCACAAGGAGACAGCAGGGAAGCAGCAGCCAGATCAGGTGGGAGGGTTTGACTTTGGGCcct
s panTro4.chr3_GL389630_random     82205 99 +    103936 GGACTGG-CCTAGACACAGGACTGCACAGGTTCTTTTCCCACAAGAAGACAGCAGGGAAGCAGCAGCCAGATCAGGTGGGAGGGTTTGACTTTGGGCccc
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120855488 97 + 123690457 GGGCTGG-CCTAGACACAGGACTG--CAGGTTCTTTTCCCACAAGGAGGCAGCAGGGAAGCAGCAGCCAGATCAGGTGGGAGGGTTTGACTCTGGGCcct
i nomLeu3.chr11                M 186 C 0
s rheMac3.chrUn_JH291127           27430 95 +    111706 GGGCTGGCCCTAGACACAGGACTG--CAGGTTCCTTCCCCAcaaggagacagcagggaagcagcagccagatcaggtgggagggtttgactttgggc---
i rheMac3.chrUn_JH291127       C 0 C 0
s papAnu2.chr2                     59845 95 - 187378091 GGGCTGGCCCTAGACACAGGACTG--CAGGTTCCTTCCCCACAAGGAGACAGCAGGGAAGCAGCAGCCAGATCAGGTGGGAGGGTTTGACTTTGGgc---
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   411352 95 -  91754291 GGGCTGGCCCTAGACACAGGACTG--CAGGTTCCTTCCCCAcaaggagacagcagggaagcagcagccagatcaggtgggagggtttgactttgggc---
i chlSab2.chr15                C 0 C 0
e mm10.chr16                    65426122 363 -  98207768 I
e canFam3.chr33                 29063447 403 +  31377067 I
e calJac3.chr17                   927386  1 -  74750902 I
e macFas5.chr2                     62642 425 + 192460366 M
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=410905.000000
s hg38.chr3_KI270935v1_alt        118783 260 +    197351 ggcgcggtggctcacgcctgtaatctcagcactttgggaggccaaggtggacggatcacctgaggtcaggagttcgagaccagcctg-accaacatggcgaaa-ccccgtctctactaaaaatgcaaaaatcagctgggcgtggtggtgcatgcctgtagtcccaactactcgggaggctgaggcaggagaatcgcttgaacgcgggagaaggacgttgcagtgagccgagaacgcaccactgcactccagcctgggcgaca-
s panTro4.chr3_GL389630_random     82304 260 +    103936 ggcgcggtggctcacgcctgtaatctcagcactttgggaggccaaggtggacggatcacctgaggtcaggagttcgagaccagcctg-accaacatggcgaaa-ccccgtctctactaaaaatgcaaaaatcagctgggcgtggtggtgcgtgcctgtagtcccaactactcgggaggctgaggcaggagaatcgcttgaacgcgggagaaggacgttgcagtgagccgagaacgcaccactgcactccagcctgggcgaca-
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120855585 260 + 123690457 ggcgcggtggctcacgcctgtaatctcagcactttgggaggccaaggtggacggatcacctgaggtcaggagttcgagaccagcctg-accaacatggcgaaa-ccccatctctactaaaaatgcaaaaatcagctgggcgtggtggtgcatgcctgtagtcccaactacttgggaggctgaggcaagagaatcgcttgaactcgggagaaggacgtggcagtgagccgagaacgcaccactgcactccagcctgggcgaca-
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           27525 250 +    111706 ----------ctcacgcctgtaatctcagcactttgggaggctgaggtgggcggatcacctgaggtcaggagtttgagaccagcctg-gccaacatggcgaaa-ccttgtttctactaaaaatacaaaaatcagctgggtgtggtggtgcgcgcctgtagtcacagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggtggaggttgcagtgagtcgagatcacgccactgcactccagcctgggcgacg-
i rheMac3.chrUn_JH291127       C 0 I 1
s papAnu2.chr2                     59940 249 - 187378091 ----------ctcacgcctgtcatctcagcactttgggaggctgaggtgggcggatcacctgaggtcaggagtttgagaccagcctg-gccaacatggcgaaa-ccttgtttctactaaaaatacaaaaatcagctgggtgtggtggtgcgcgcctgtagtcacagctactcgggaggctgaggcaggagaatggcgtgaacccgggagctggaggttgcagtgag-cgagaacgcaccactgcactccagcccgggcgacg-
i papAnu2.chr2                 C 0 I 1
s chlSab2.chr15                   411447 248 -  91754291 ----------ctcacgcctgaaatctcagcactttggaaggctgaggtgggcggatcacctgaggtca-gagtttgagaccagcctg-gccaacatggcgaaa-ccttgtttctactaaaaatacaaaaatcagctgggtgtggtggtgcgcgcctgtagtcacagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggaggttgcagtgag-cgagaacgcaccattgcactccagcctgggcgacg-
i chlSab2.chr15                C 0 I 1
s calJac3.chr17                   927387 263 -  74750902 ggcatggtggttcccacctgtaatcccagcactttgggaggccaaggcgggtggatcacctgaggttgggagttcaagaccagcctgaaccaatatggtgaaacccccatctctactaaaaatacaaaagttagccaggtgtggtggcgtgcacctatcatctcagctactggggaggtggaggcagaagaatcgcttgaacccgggaggcagaggttgctgtgagctgagaatgcaccactgcactccagcctgggtaaccg
i calJac3.chr17                I 1 C 0
e mm10.chr16                    65426122 363 -  98207768 I
e canFam3.chr33                 29063447 403 +  31377067 I
e macFas5.chr2                     62642 425 + 192460366 M
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=62341.000000
s hg38.chr3_KI270935v1_alt        119043 39 +    197351 aatgacactccatctcaaaacataaaaatataaaaaaTG
s panTro4.chr3_GL389630_random     82564 39 +    103936 aatgacactccatctcaaaacataaaaatataaaaaaTG
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120855845 39 + 123690457 aatgacactccatctcaaaacataaaaatataaaaaaTG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           27776 31 +    111706 aatgacactccatctc-------aaaaa-ataaaaaatg
i rheMac3.chrUn_JH291127       I 1 C 0
s macFas5.chr2                     63072 31 + 192460366 AATGACACTCCATCTC-------AAAAA-ATAAaaaatg
i macFas5.chr2                 M 425 C 0
s papAnu2.chr2                     60190 38 - 187378091 aatgacactccatctcaaaaaataaaaa-ataaaaaatg
i papAnu2.chr2                 I 1 C 0
s chlSab2.chr15                   411696 38 -  91754291 aatgacactccatctcaaaaaataaaaa-ataaaaaatg
i chlSab2.chr15                I 1 C 0
s calJac3.chr17                   927650 34 -  74750902 agagatactcagtctc---aaataaaaa-ataaaaaa-G
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65426122 363 -  98207768 I
e canFam3.chr33                 29063447 403 +  31377067 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=53544.000000
s hg38.chr3_KI270935v1_alt        119082 17 +    197351 TTTGGCTttggaaacca
s panTro4.chr3_GL389630_random     82603 17 +    103936 TTTGGCTttggaaacca
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120855884 17 + 123690457 TTTGGCTttggaaacca
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           27807 17 +    111706 tttggctttggaaacca
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     63103 17 + 192460366 tttggctttggaaacca
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     60228 17 - 187378091 tttggcTTTGGAAACCG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   411734 17 -  91754291 tttggctttggaaacca
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   927684 17 -  74750902 TTTGGCTttggaaacca
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29063850 17 +  31377067 TTTGCCTTTGGAACCCA
i canFam3.chr33                I 403 C 0
e mm10.chr16                    65426122 363 -  98207768 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=1649457.000000
s hg38.chr3_KI270935v1_alt        119099 597 +    197351 tgccctgctgcttaacctactgcgt-cctggggcaggttccttgtcatctctaagctgcagt-tttctcatcttcgaaatagTTCTAAGCCC--CC--CTATGGCTCTTTTGGGTTTCAGAGTTTGTAATATAGCGCCTTTATTCTCCACACAGAGCAGGCACTCACAACTCTCCTTTT--CCACTGTCCTCTCTTCCCTGGTCTCTGATCTCTC--------------GAGCCATCCTA----------------------------ATTCCTGGACCCCTTGCAGTGTCT-TGCCCAGCTTGGGTTCCCCAGCACTGTCCTCCACCTCCTGGCCACAG--CCCTATGCACCTGCAGCGGGGCCCACTGGGCAGGTGCTGGCACTGGCCTCCATGGTCACAGTAGCCCCTACTGCACGGGGACACGCAGGTGAAGCCGCTCTGGGGGCTGTAGACCAGGTCGTAGCCCTTGTAGCCATCGCATCTGAAGTAAGCCTTCAGCGTGCTCACGTTCACTGTCGGGAAGGACACAGATTAACACAGAAAGCAACCGATGAACACTAAATCAGtaccttttcagccacgaattcc-tttt----cgggtgttt--------atcctgagaaataattggagaagtgcacagatacatatgcccctgg
s panTro4.chr3_GL389630_random     82620 597 +    103936 tgccctgctgcttaacctactgcgt-cctggggcaggttccttgtcatctctaagctgcagt-tttctcatcttcgaaatggTTCTAAGCCC--CC--CTATGGCTCTTTTGGGTTTCAGAGTTTGTAATATAGCGCCTTTATTCTCCACACAGAGCAGGCACTCACAACTCTCCTTTT--CCACTGTCCTCTCTTCCCTGGTCTCTGATCTCTC--------------GAGCCATCCTA----------------------------ATTCCTGGACCCCTTGCAGTGTCT-TGCCCAGCTTGGGTTCCCCAGCACTGTCCTCCACCTCCTGGCCACAG--CCCTATGCACCTGCAGCGGGGCCCACTGGGCAGGTGCTGGCACTGGCCTCCATGGTCACAGTAGCCCCTACTGCACGGGGACACGCAGGTGAAGCCGCTCTGGGGGCTGTAGACCAGGTCGTAGCCCTTGTAGCCATCGCATCTGAAGTAAGCCTTCAGCGTGCTCACGTTCACTGTCGGGAAGGACACAGATTAACACAGGAAGCAACCGATGAACACTAAATCAataccttttcagccacgaattcc-tttt----cgggtgttt--------atcctgagaaataattaaagaagtgcacagatacatatgcccctgg
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120855901 609 + 123690457 cgccctgctgcttaacctgctgcat-cccagggcagcttccttgtcatctctaagccgcagt-tttctcatcttcaaaatggctctaatGCC--CC--TTGTGGCTCCTTTGGGTTTCAGAGTTTGTAATATAGCGCCTTTATTCTCCACACACAGCAGGCACTCACAACTCTcctttt--ccactgtcccctcttccctggtctctgatctctCTC--TTTACAAAGGGAGCCATCCTA----------------------------ATTCCTGGACCCCTTGCAGTGTCT-TGCCCAGCTTGGGTTCCCCAGCACTGTCATCCACCTCCTGGCCGCAG--CCCTATGCACCTGCAGCGGGGCCCACTGGGCAGGTGCTGGCACTGGCCTCCATGGTCACAGTAGCCCCTACTGCACGGGGACACGCAGGTGAAGCCACTCTGGGGGCTGTAGACCAGGTCGTAGCCCTTGTAGCCATTGCATTTGAAGTAAGCCTTCAGCGTGCTCACGTTCACTGTCGGGAAGGACACAGATTAACACAGAAAGCAACTGATGAACACTAAATCAataccttttcagccacgaattcc-tttt----tgggtgttt--------atcctgagaaataagtaaagaagtgcacagatacatatgcccctgg
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           27824 600 +    111706 tgccctgctgcttaacctactggct-ccccgggcaagttcccggtcatctttaagctgcagt-tttctcatcttcgaaatggtttcaatacc--cc--ctgTGGCTCCTTTGGGTTTCAGAGTTTGTAATA---------TATTCTCCACACAGAGCAGGCACTCACAACTCTCCCTTC--CCACTGTCCCCTCTTCCCAGGTCTCCGATCTTTCTC--GTTACAAAGGGAGCCATCCTA----------------------------ATTTCTGGACCCCTTGCGGTGTCT-TGCCCAGCTTGGGTTCCCCAGCACTGTCATCCACCTCCTGGCCGCAG--CCCTATGCACCTGCAGCGGGGCCCACTGGGCAGGTGCTGGCACTGGCCTCCATGGTCACAGTAGCCTCTACTGCACGGGGACACGCAGGTGAAGCCGCTCTGGGGGCTATAGACCAGGTCATAGCCCTTGTAGCCATTGCATTTGAAGTAAGCCTTCAGCGTGCTCACGTTCACTGTCGGGAAGGACATAGATTAACACAGAAAGCAACTGATGAACACTAAATCAATACCTTTTCAACCACGAATTCT-TTTT----CAGGTGTTT--------CTCCTGAGAAGTAATTAGAGAGATGCACAGATACATATGCCCCTGC
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     63120 600 + 192460366 tgccctgctgcttaacctactggct-ccccgggcaagttcctggtcatctttaagctgcagt-tttctcatcttcgaaatggTTTCAATACC--CC--CTGTGGCTCCTTTGGGTTTCAGAGTTTGTAATA---------TATTCTCCACACAGAGCAGGCACTCACAACTCTCCCTTC--CCACTGTCCCCTCTTCCCAGGTCTCCGATCTTTCTC--GTTACAAAGGGAGCCATCCTA----------------------------ATTTCTGGACCCCTTGCGGTGTCT-TGCCCAGCTTGGGTTCCCCAGCACTGTCATCCACCTCCTGGCCGCAG--CCCTATGCACCTGCAGCGGGGCCCACTGGGCAGGTGCTGGCACTGGCCTCCATGGTCACAGTAGCCTCTACTGCACGGGGACACGCAGGTGAAGCCGCTCTGGGGGCTATAGACCAGGTCATAGCCCTTGTAGCCATTGCATTTGAAGTAAGCCTTCAGCGTGCTCACGTTCACTGTCGGGAAGGACATAGATTAACACAGAAAGCAACTGATGAACACTAAATCAATACCTTTTCAACCACGAATTCT-TTTT----CAGGTGTTT--------CTCCTGAGAAGTAATTAGAGAGATGCACAGATACATATGCCCCTGC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     60245 600 - 187378091 TGCCCTGCTGCTTAACCTACTGGCT-CCCCGGGCAAGTTCCTGGTCATCTTTAAGctgcagt-tttctcatcttcGAAATGGTTTCAGTACC--CC--CTGTGGCTCCTTTGGGTTTCAGAGTTTGTAATA---------TATTCTCCACACAGAGCAGGCACTCACAACTCTCCCTTC--CCACTGTCCCCTCTTCCCAGGTCTCCGATCTTTCTC--GTTACAAAGGGAACCATCCTA----------------------------ATTTCTGGACCCCTTGCGGTGTCT-TGCCCAGCTTGGGTTCCCCAGCACTGTCATCCACCTCCTGGCCGCAG--CCCTATGCACCTGCAGCGGGGCCCACTGGGCAGGTGCTGGCACTGGCCTCCATGGTCACAGTAGCCCCTACTGCACGGGGACACGCAGGTGAAGCCGCTCTGGGGGCTGTAGACCAGGTCATAGCCCTTGTAGCCATTGCATTTGAAGTAAGCCTTCAGCGTGCTCACGTTCACTGTCGGGAAGGACATAGATTAACACACAAAGCAACTGATGAACACTAAATCAATACCTTTTCAACCACGAATTCC-TTTT----CAGGTGTTT--------CTCCTGAGAAGTAATTAGAGAGATGCACAGATACATATGCCCCTGC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   411751 596 -  91754291 tgccctgctgcttaacctactggct-ccccgggcaagttccttgtcatctttaagctgcagt-tttctcatcttcgaaatggTTTCAGTACC--CC--CTGTGGCTCCTTTGGGTTTCAGAGTTTGTAATA---------TATTCTCCACACAGAGCAGGCACTCACAACTCTCCCTTC--CCACTGTCCCCTCTTCCCTGGTCTCCGATCTTTCTC--GTTACAAAGGGAGCCATCCTA----------------------------ATTTCTGGGCCCCTTGCGGTGTCT-TGCCCAGCTTGGGTTCCCCAGCACTGTCATCCACCTCCTGGCCGAAG--CCCTATGCACCTGCAGCGGGGCCCACTGGGCAGGTGCTGGCACTGGCCTCCATGGTCACAGTAGCCCCTACTGCACGGGGACACGCAGGTGAAGCCGCTCTGGGGGCTGTAGACCAGGTCATAGCCCTTGTAGCCATTGCATTCGAAGTAAGCCTTCAGCGTGCTCACGTTCACTGTCGGGAAGGACACAGGTTAACACAGAAAGCAACTGATGAACACTAAAGCAATACCTTTTCAACCACGAATTCC-TTTT----CAGGTGTTT--------CTCCTGAGAAA----TAGAGAGGTGCACAGATACATATGCCCCTGC
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   927701 567 -  74750902 taccctgct-tttaaccgactgggt-gccggggcagtttcctt---atctctcagctgccat-tttctcatcttcgaaatggttctaaatac--ccaactGTGGCTCCTTTGGGCCTCCGAG---GTAATATAGCGCCCTTATTCTCCACACAGAGCAGGCACTCACAACCCTCCTTTCTTCCACTGTCCCCTCTTCCCTGGTCTCTGGTTTCTCTCCAATCTCAAAGGGAGCCATCCTA----------------------------ATTCCTGGG-CCTTTGCAGGGTCT-TGCCCAGCTTGAGTTCCCCAGCAC--TCATCCGCCTCCTGGCCGTGG--CCCTACGCACCTGCAGCGGGGCCCACTGGGCAGGTGCTGGCACTGGCCTCCGTGGTCACAGTAGCCCCTACTGCACGGGGACACACAGGTGAAGCCGCTCTGGGGGCCGTAAACCAGGTTGTAGCCCTCGTAGCCACTGCATTTGAAGTAAGTCCTCAGCATGCTCACGTTCACTGTCAGGAAGAACACAGGTGAACACAGAAAGCAACCGATGGACACAAAATC--------------------------------------------------CTCCTGAGAAACGACTAGAGAAGTGCAC-GATACGTATGTCCCTGG
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65426485 631 -  98207768 TACCCTGGTATTTTACTTCCTGGGTGCCTACTGGAGCCTCCTC----TCTCTTCAATGCAGTATTCCCCAAGTCTGGAATGGTTGAAGTAAC--CT-TTTGTGACTAGCTTGACTTTCAGAA---GCAATG-CATGTCTTTCTCCTCCATGCAGAGGAGTGCCACACA---CCCTTCTC--CTACTGCCCACT-TTCTCTGCTTTTCACCCTCCA----GCCACTGGG-GAGTCATCCCA-CTGTCAAGTCTTAGGAGAGGACATTGTCTTCCTGGGCCTACTGTGGTGTCT-CGTCAAATCTGAGTTCCCCAGTGC-----TTTGCTTTCCTGCCCCAGGCCCCTACCCACCTGCATTGGGGCCCATCTGGCAGGTGCTTGCATTGGCCTCCATTGTGACAGTAGCCCTCACTACATGGGGACACACAGGTGACACCATCCTGTGGGCTGTAGACCAGGTGGTAGCCTTTGTAGCCATCACATGTGAAGTACTCCTCCAGCATACTTAGGTTCACTGT-AGGCAGGAAAAGGATACATGGAGTAAGCAAACCACAGA-GGTAAATTCATTCCTTTCCATCAGGTAGTCAA-GTTTCAGGCAGGTGTTTATGAGATGTTTCTGAGAAACATCTGGTCAAGTGCCTAGAGTCCTGTATCCGTAG
i mm10.chr16                   I 363 I 573
s canFam3.chr33                 29063867 605 +  31377067 TGTTCTGTTATTTAACCTCCTGGCT-ACCTGGGCAGATTCATTACC-----------------TACCTCTTCTTTAAAAGGGTCATACTACCTACC--CAGAAGC-----TAAGTGTCAGTGTTAGAAGTCATGCAGCATCTTTATCCACACAGAGTAAGTGCTCACA---CATCTTTT--CTATGGTCCCTTTTTCTCTGATCCCTGCTCTCTG----AGTCATCAGAGAACCATCCTAACTTCCAGACACCACCAGGTACCGTGGCATTTCTACGCCCCTTGCGGTATCTGTGCCCGGCCTGGAGTCTCCGGCTCTG-----CTCGTCCTGCCCTCTC--CCCGACTCACCTGCAGCGGGGCCCTTGGGGCAGGTGCTGACACTGGCCTCCGTGCTTACAATAGCCCTCACTGCACGGGGACACGCAGGTGAAGCCGCTCTGGGGGCTGTAGACCAGGCGGTAGTCCTTGTAGCTGTTGCATTTGAAGTAAGCCTTCAGCGTGCTCACGTTCACTGTC----AGGACACAGATGAACATGGAAAGCAATCAAT-AGCACCGGAtctatacctcttcaatcgggaattctgtttt----caggcattt--------atcctgagaaatccttggaaaagcatgcaaatctgtatgttcatgg
i canFam3.chr33                C 0 C 0
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=173086.000000
s hg38.chr3_KI270935v1_alt        119696 74 +    197351 acgttcagatcagcatggtggataatagt---aacgtttcagaagtagggtctggttaaataa--actactgcacatcc
s panTro4.chr3_GL389630_random     83217 74 +    103936 acgttcagatcagcgtggtggataatagt---aacgtttcagaagtagagtctggttaaataa--actactgcacatcc
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120856510 77 + 123690457 acattcagatcagcgtggtggataatagtaacaacatttcagaagtggggtctggttaaataa--actactgcacatcc
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           28424 74 +    111706 ATATTCAGATCAGCGTGGTGGATAATAGTAACAACGTTTCAGAAGTGGGGTCGGGTTAAATAA-----ACTGCACATCC
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     63720 74 + 192460366 ATATTCAGATCAGCGTGGTGGATAATAGTAACAACGTTTCAGAAGTGGGGTCGGGTTAAATAA-----ACTGCACATCC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     60845 74 - 187378091 ATATTCAGATCAGCGTGGTGGATAATAGTAACAACGTTTCAGAAGTGGGGTCGGGTTAAATAC-----ACTGCACATCC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   412347 74 -  91754291 ATATTCAGATTAGCGTGGTGGGTAATAGTAACAACGTTCCAGAAGTGGGGTCGGGTTAAATAA-----ACTGCACATCC
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   928268 75 -  74750902 GCATTCGGATCAGCATGGTGGA-AAT-GCAACAATGTTTCAGAAGTGGGGTCTGGTTAAATGA--ACTACTGCGGATCG
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29064472 79 +  31377067 acgtccagagcagcgtggtttataatagcaaCAGTGTTTAATAGGTGAGGTTTTGTTAAACAAGGAATACTGTGCAACC
i canFam3.chr33                C 0 I 58
e mm10.chr16                    65427116 573 -  98207768 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=76307.000000
s hg38.chr3_KI270935v1_alt        119770  97 +    197351 ttaccaagggatGGTGCTTCCTATGGAAAAAGTTTCCTAGGGAAAAAGG------------------------------------------------TTCCTAGGGAAAAAGGTTCCTGTGGAAAAAGGTTCCTATGGAAAATGC
s panTro4.chr3_GL389630_random     83291  97 +    103936 ttaccaagggatGGTGCTTCCTATGGAAAAAGTTTCCTAGGGAAAAAGT------------------------------------------------TTCTTAGGGAAAAAGGTTCCTAGGGAAAAAGGTTCCTATGGAAAATGC
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120856587 145 + 123690457 ttaccaagggatGGTGGTTCCCATGGAAAAAGTTTCCTAGGGAAAAAGGTTCCTATGGAAAAAGGTTCCAAGGGATGGTGGTTCCTATGGAAAAAGTTTCCTAGGGAAAAAGGTTCCTATGGAAAAAGGTTCCTAGGGAAAATGC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           28498  65 +    111706 TTACCAAGGGATGACAGTTCCTATGGAAAAAGTTTCCTATGGAAAAAGT--------------------------------------------------------------------------------TTTCTATGGAAAATGC
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     63794  65 + 192460366 TTACCAAGGGATGACAGTTCCTATGGAAAAAGTTTCCTATGGAAAAAGT--------------------------------------------------------------------------------TTTCTATGGAAAATGC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     60919  64 - 187378091 TTACCAAGGGATGACAGTTCCTATGGAAAAA-TTTCCTATGGAAAAAGT--------------------------------------------------------------------------------TTTCTATGGAAAATGC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   412421  49 -  91754291 TTACCAAGGGATGACAGTTCCTATGGACAAA----------------GT--------------------------------------------------------------------------------TTCCTATGGAAAATGC
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   928343  29 -  74750902 TTACCAAGGGATGCCA-------------------------------GT--------------------------------------------------------------------------------TTCCTATGGAA-----
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65427116 573 -  98207768 I
e canFam3.chr33                 29064551  58 +  31377067 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=312784.000000
s hg38.chr3_KI270935v1_alt        119867 124 +    197351 TTTCCTGaagagcacatgctttgaaggtggccagacttgggtggaaactgaaactctgctagtgactagatgtgtaattcaggga-----------------------------acattccttcactctttcagcttcagtttccttatcttt
s panTro4.chr3_GL389630_random     83388 124 +    103936 TTTCCTGaagagcacatgctttgaaggtggccagacttgggtggaaactgaaactctgctagtaactagatgtgtaattcaggga-----------------------------acattccttcactctttcagcttcagtttccttatcttt
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120856732 124 + 123690457 TTTCCTGaagagcacatgctttgaaggtggccagacctgggtggaaactgaaactctgctagttactagacgtgtaattcaggga-----------------------------acactctttcactctttcagcttcagtttccttatcttt
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           28563 124 +    111706 TTTCCTaaagagcgtatgctttgaaggtggccagacctgggttgaaactgaaactctactagtaactagatgtgtaattcaggga-----------------------------acattccttaactctttcagtgtcagtttccttatcttt
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     63859 124 + 192460366 TTTCCTaaagagcgtatgctttgaaggtggccagacctgggttgaaactgaaactctactagtaactagatgtgtaattcaggga-----------------------------acattccttaactctttcagtgtcagtttccttatcttt
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     60983 124 - 187378091 TTTTCTAAAGAGCGTATGCTTTGAAGGTGGCCAGACCTGGGTTGAAACTGAAACTCTACTAGTAACTAGATGTGTAATTCAGGGA-----------------------------ACATTCCTTAACTCTTTCAgtgtcagtttccttatcttt
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   412470 123 -  91754291 TTTCCTaaagagcgtatgctttgaaggtggccagacccgggttgaaactgaaactctactagtaactagatgtgtaattcaggga-----------------------------acatt-cttaactctttcagtgtcagtttccttatcttt
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   928372 107 -  74750902 ---------------ATgctttgaaggtggccagacctgagttgaaactcaaactc-actggtagctagttgtgtaattcaggga-----------------------------acactccttatctc-tgcagcttcagtttccttatgtct
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29064609 153 +  31377067 tttttttaagagcatacgctttgaagtaaaccagacctacgttgaaattcaagctctactactaactagttgtgtgctttggggaaatttcttTTTTTTTTTTGGGGGGGggggaaatttcttaactccttcagcctcagtttccttatctTT
i canFam3.chr33                I 58 I 572
e mm10.chr16                    65427116 573 -  98207768 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=286670.000000
s hg38.chr3_KI270935v1_alt        119991 131 +    197351 aaaaggaaatgatcataatagcacttatgctgctgtgagatttaaatgagataatgtgtccacagtactcagtacagtgccggacacacagtaagcactcaaacaatggtaatgattattatAATGTATTT
s panTro4.chr3_GL389630_random     83512 127 +    103936 aaaaggaaatgatcataatagcacttatgctgctgtgagatttaaatgagataatgtgtccacagtactcagtacagtgccggacacacagtaagcact----caatggtaatgattattatAATGTATTT
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120856856 131 + 123690457 aaaaggaaatgatcataatagcacttatgctgctgtgagatttaaatgagataatgtgtccacagtactcagtacactgcctgacacacagtaagcactccaaaaatggtaatgattattatAACGTATTT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           28687 130 +    111706 aaaaggaaatgatcataatagcacttatgctgctgtgagatttaaatgaggtaatatgtccacagtactcagtacactgcctgacacacagtaagcactc-aaaaatggaaatgattattCTAATGTATTT
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     63983 131 + 192460366 aaaaggaaatgatcataatagcacttatgctgctgtgagatttaaatgaggtaatatgtccacagtactcagtacactgcctgacacacagtaagcactcaaaaaatggaaatgattattCTAATGTATTT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     61107 131 - 187378091 aaaaggAAATGATCATAATAGCACTTATGCTGCTGTGAgatttaaatgaggtaatatgtCCACAGTACTCAGTAcactgcctgacacacagtaagcactcaaaaaaTGGTAATGATTAttctaatgtattt
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   412593 131 -  91754291 aaaaggaaatgatcataatagcacttatgctgctgtgagatttaaatggggtaatatgtccacagtactcagtacactgcctgacacacagtaagcaatcaaaaaatggtaatgattattCTAACGTATTT
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   928479 121 -  74750902 aaaagcacagga----------acttacgctgctgtgagatttaaatgagataacgtgtccacaatactccgtacactgcctgacacacagtaaaccctcaaaaaacgaaaatggttattatAACGTATTT
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65427116 573 -  98207768 I
e canFam3.chr33                 29064762 572 +  31377067 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=796885.000000
s hg38.chr3_KI270935v1_alt        120122 322 +    197351 TAAAATATG--ACACTATATTCAAACATACCATCA--TAATATGTCAAATGGGAATGTGGACAGAATATATGAGACAACCTGTTCACAACTGTTTAA-TGAGGAGGTTTTCCAACATTAGGAATGATTtgatcc---ttcagtaaaaaat----ggatgtctgaaggttcctag-gcataaaagaaagttcagaaggatatgtaggaaatactgttgtctctctggggattgggattaca--gggtt---tttttcctcttttctttttgttaagtttgtgtttcctaaagtttctgcaataaacatacgatgcttgtataataaaaaTTATAGGTTTTC
s panTro4.chr3_GL389630_random     83639 321 +    103936 TAAAATATG--ACACTATATTCAAACATACCATTA--TAATATGGCAAATGGGAATGTGGACAGAATATATGAGACAACCTGTTCACAACTGTTTAA-TCAGGAGGTTCTCCAGCATTAGGAatgatttgat-c---ttcaataaaaaat----caatgtgtgaaggttcctag-gcataaaagaaagttcagaaggatatgtacgaaatattgttgtctctctggggattgggattaca--gggtt---tttttcctcttttctttttgttaagtttgtgtttcctaaagtttctgcaataaatgtacgatgcttgtataataaaaaTTGTAGGTTTTC
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120856987 321 + 123690457 TAAAATATG--ACACTATATTCAAACATACCATTA--TAATATGTCAAATGGGAATATGGACACAATATATGAGACAACCTGTTCACAATTGTTGAA-CGagcaggttatccaacattaggaatgatttgatcc---ttcaataaaaaat----cgatgtgtgaaggttcctag-gcataaaagaaagttcagacggatatgtatgaaatattgttgtctctctgggggttgggattaca--gggtt---tttttccttttttctttttgttaagtttg-gtttcctaaagtttctgcaataaacatacgatgcttgtataataaaaaTTATAGGTTTTC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           28817 321 +    111706 TAAAATATG--ACACTATATTCAAACCTACCATTA--TAATATGTCAAATGGGAATATGGATACAATATATGAGACAATCTGTTCACAAATGTTTAA-CGAGGAGGTTATCAAACATTAGGAATGATTTGATCC---TTCAAtaaaaaat----cgatgtgtgaa-gttcttag-gcataaatgaaagttcagaaggatatgtacaaaatattgttgtctctctggggattgggattaca--gggtt---ttttccctcttttctttttgttaaatttgtgtttcctaaagtttctgcaataaacataggatacttgtataataaaaaTTATAGGTTTTC
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     64114 321 + 192460366 TAAAATATG--ACACTATATTCAAACCTACCATTA--TAATATGTCAAATGGGAATATGGATACAATATATGAGACAATCTGTTCACAAATGTTTAA-CGaggaggttatcaaacattaggaatgatttgatcc---ttcaataaaaaat----cgatgtgtgaa-gttcttag-gcataaatgaaagttcagaaggatatgtacaaaatattgttgtctctctggggattgggattaca--gggtt---tttttcctcttttctttttgttaaatttgtgtttcctaaagtttctgcaataaacataggatacttgtataataaaaaTTATAGGTTTTC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     61238 318 - 187378091 taaaatatg--acactaTATTCAAACCTACCATTA--TAATATGTCAAATGGGAATATGGATACAATATGTGAGACAATCTGTTCACAAATGTTTAA-CGAGGAGGTTATCAAACATTAGGAATGATTTGATCC---TTCAATAAAAAAT----CGATGTGTGAA-GTTCTTAG-GCATAAACAAAAGTTCAGAAGGATATGTACAAAATA---TTGTCTCTCTGgggattgggattaca--ggggt---tttttcctcttttctttttgttaaatttgtgtTTCCTAAAgtttctgcaataaacataggatacttgtataataaaaattataggttTTC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   412724 320 -  91754291 TAAAATATG--ACACTATATTCAAACCTACCATTA--TAATATGTCAAATGGGAATATGGATACAATATATGAGACAATCTGTTCACAATTGTTTAA-CGaggaggttatcaaacattaggaatgatttgatcc---ttcaataaaaaat----cgatatgtgaa-gttcttag-gtgtaaacgaaagttcagaagaatatgtac-aaatattgttgtctctctggggattgggattaca--ggggt---tttttcctcttttctttttgttaaatttgtgtttcctaaagtttctgcaataaacataggatacttgtataataaaaaTTATAGGTTTTC
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   928600 322 -  74750902 TAAAATGTG--ACACTATATTCAAATGTATTATAAAGCAATATGTGAAATGGGAACATGGACACAGCACATGAGATTGTCTGTTCACAACTGTTGaa-gaaggaggttaccaaacattaggaacgatttgatcc---ttcagtaaaaagc----caccgtgtgaaggttcctcg-gcataaaagaaagctcagaaggaaatgcacaaaatattg-----tctctgggcacgggaattaca--ggtttttctttcttctctcttctttttgttaaatgtttgtttcctacagtttctgcagtaaacatatgatacttatataacaaaaaTTTTAGGTTTTC
i calJac3.chr17                C 0 I 912
s canFam3.chr33                 29065334 329 +  31377067 taaaaTATAGCACACCACATTAAAATGT---ATGA--Taaaataataaatgggaacacatatacaatatacaaggtaatatgttcacaattgcttaagtaataaggtcaccaaacattaggtactacttgatccccttattataaaaaatattggtatgtgtgaagactcctaatgcataaaagaaaattcagaaggataggtgcaaaatggacttg--tctttggggcttggaattacacgtgatt---ttttttctctcttccttttgttaa-tctgtgtctcctcaagtttctacaataaacatattgtacttgtataataaaaaCTGTGGGGTTTC
i canFam3.chr33                I 572 C 0
e mm10.chr16                    65427116 573 -  98207768 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=11690.000000
s hg38.chr3_KI270935v1_alt        120444  8 +    197351 CTTAATTG------------------
s panTro4.chr3_GL389630_random     83960  8 +    103936 CTTAATTG------------------
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120857308  8 + 123690457 CTTAATTG------------------
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           29138  8 +    111706 CTTAATTG------------------
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     64435  8 + 192460366 CTTAATTG------------------
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     61556  8 - 187378091 CTTAATTG------------------
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   413044  8 -  91754291 CTTAATTG------------------
i chlSab2.chr15                C 0 C 0
s canFam3.chr33                 29065663 25 +  31377067 -TTGGTTGGCTTTCTTTAACAAAAGG
i canFam3.chr33                C 0 C 0
e mm10.chr16                    65427116 573 -  98207768 I
e calJac3.chr17                   928922 912 -  74750902 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=48811.000000
s hg38.chr3_KI270935v1_alt        120452 29 +    197351 CATAGTCAGGG-------CT--------TGCCTCCCTGCGCCTC
s panTro4.chr3_GL389630_random     83968 29 +    103936 CATAGTCAGGG-------CT--------TGCCTCCCTGTGCCTC
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120857316 29 + 123690457 CATAGTCAGGG-------CT--------TGCCTCCCTGCGCCTC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           29146 29 +    111706 CATAGTCAGGG-------TT--------TGCCTCCCTGGGCCTC
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     64443 29 + 192460366 CATAGTCAGGG-------TT--------TGCCTCCCTGGGCCTC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     61564 29 - 187378091 CATAGTCAGGG-------TT--------TGCCTCCCTGGGCCTC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   413052 13 -  91754291 CATAGTCAGGG-------TT------------------------
i chlSab2.chr15                C 0 C 0
s mm10.chr16                    65427689 36 -  98207768 CACAGTCGGGGATGCCCCCT--------TACCTGACTGTGCCTG
i mm10.chr16                   I 573 I 5
s canFam3.chr33                 29065688 37 +  31377067 CACAGTCAGGT-------CTAGGGGAGTTGTGTCCGTATGCCAC
i canFam3.chr33                C 0 C 0
e calJac3.chr17                   928922 912 -  74750902 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=814009.000000
s hg38.chr3_KI270935v1_alt        120481 304 +    197351 CTACCCCAACTCCCCA--------ACATACAGTAGTTCTGAGGGATTTCA-C-CCCCTG-CTCCGGGAGAGAGCGGGCTTAGCCTGGATTCTGGGAGAAGCTCTTGCTTGGTCCCAGACCCAAGTAAAACAGCAGTTCCTGTTGTGTTTGGG--GCGGCCCCTGCCCTGTTCTCTGCCCTA-TACAGAAAATAGG--ACGTGTTATTCCTTTGTTTCTCTGACAAGCTTGCCAACT-----TATTCCTGTTCCAGGAAAACCGG----GGGCtgtcagcactgaaagggggctcagaaatcccatctcatttt-cagatgggggtgctga
s panTro4.chr3_GL389630_random     83997 303 +    103936 CTACCCCAACTCCCCA--------ACATACAGTAGTTCTGAGGGATTTCA-C-CCCCTG-CTCCGGGAGAGAGCGGGCTTAGCCTGGATTCTGGGAGAAGCTCTTGCTTGGTCCCAGACCCAAGTAAAACAGCAGTTTCTGTTGTGTTTGGG--GCAGCCCCTGCCCTGTTCTCTGCCCTA-TACAGAAAATAGG--ACGTGTTATTCCTTTGTTTCTCTGACAAGCTTGCCAACT-----TATTCCTGTTCCGGGagaaccgg----gggctgtcagcactgaaagggggctcagaaatcccatctca-ttt-cagatgggggtgctga
i panTro4.chr3_GL389630_random C 0 I 5
s nomLeu3.chr11                120857345 299 + 123690457 CTACCCCAACTCCCCA--------ACATACAGTAGTTCTGAGGGATTTCA-C-CCCCTG-CTCCGGGAGAGAGTGGGCTTAGCCTGGATTCTGGGAGAAGCTCTTGCTTGGTCCCAGACCCAAGTAAAACAGCAGTTTCTGTTGTGTTTGGGGTGTGGCCACTGCC-------CTGCCCTA-TACAGAAAATAGG--ATGCGTTATTCCTTTGTTTCTCTGCCAAGCTTGCCAACT-----TATTCCTGTTCTGGAagaaacag----gggctgtcagcactgaaagggggctcagaaatcccatctcatttt-cagatgggggtgctga
i nomLeu3.chr11                C 0 I 78
s rheMac3.chrUn_JH291127           29175 304 +    111706 CTACCCCAACTCCCCA--------ACATACAGTAGTTCTGAGGGATTTCA-C-CCACTG-CTCCAGGAGAGAGCAGGCTTAGCCTGCATTCTAGGAGAAGCTCTTGCTTGGTCCCAGACCCAAGTAAAACAGCACTTTCTGTTGTGTTTGGG--GTGGCCACTGCCCTATTCTCTGCCCTA-TACAGAAAATAGG--ATGTGTTATTCGTTTGTTACTCTGACAAGCTTGCCAACT-----TATACCTGTTCCAGGagaaccag----gggctgtcagcactgaaagggggctcagaaatctcatctcatttt-cagatgggggtgctga
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     64472 304 + 192460366 CTACCCCAACTCCCCA--------ACATACAGTAGTTCTGAGAGATTTCA-C-CCACTG-CTCCAGGAGAGAGCAGGCTTAGCCTGCATTCTAGGAGAAGCTCTTGCTTGGTCCCAGACCCAAGTAAAACAGCACTTTCTGTTGTGTTTGGG--GTGGCCACTGCCCTATTCTCTGCCCTA-TACAGAAAATAGG--ATGTGTTATTCGTTTGTTACTCTGACAAGCTTGCCAACT-----TATACCTGTTCCAGGagaaccag----gggctgtcagcactgaaagggggctcagaaatctcatctcatttt-cagatgggggtgctga
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     61593 304 - 187378091 CTACCCCAACTCCCCA--------ACATACAGTAGTTCTGAGGGATTTCA-C-CCACTG-CTCCAGGAGAGAGCAGGCTTAGCCTGCATTCTAGGAGAAGCTCTTGCTTGGTCCCAGACCCAAGTAAACCAGCACTTTCTGTTGTGTTTGGG--GTGGCCACTGCCCTATTCTCTGCCCTA-TACAGAAAATAGG--ATGTGTTACTCCTTTGTTACTCTGACAAGCTTGCCAACT-----TATACCTGTTCCAGGAGAACCAG----GGGCTGTCAGCACTGAAAGGGGGCTCAGAAATCCCATCTCATTTT-CAGATGGGGGTGCTGA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   413065 296 -  91754291 --------ACTCCCCA--------ACATAAAGTAGTTCTGAGGGATTTCA-C-CCACTG-CTCCAGGAGAGAGCAGGCTTAGCCTGCATTCTAGGAGAAGCTCTTGCTTGGTCCCAGAACCAAGTAAAACAGCACTTTCTGTTGTGTTTGAG--GTGGCCACTGCCCTATTCTCTGCCCTA-TACAGAAAATAGG--ATGTGTTATTCCTTTGTTACTCTGACAAGCTTGCCAACT-----TATACCTGTTCCAGGagaaccag----gggctgtcagcacggaaagggggctcagaaatcccatctcatttt-cagatgggggtgctga
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   929834 308 -  74750902 CTACCCCAGCTCGCCA--------ACATACAGCAGTTCTAAGGGATTTCATC-TTGTTC-CTCCAGGAGAGAGGGGGCTTAACCTGGATTCTAGAAGAAGCTCTTGCTTGCTCCTGGACCCGAGTAAAACAGCAGTTTCTGTTGTGTTTGGG--ATGGCCGCTGCTCTATTCTCTGCCCCA-TCCAGAAAATAGG--GTGCGTTATTCTTTTCTTTCTCTGACAAGCTTGCCAACT-----CATTCCTGTTCTGGGAGAACAGGGGCTGGGCTGTCAGCACTGAAACGGGGCTCAGAAATCCCACCTCATTTT-CAGGTGGGGGTG-TGA
i calJac3.chr17                I 912 C 0
s mm10.chr16                    65427730 273 -  98207768 CCACTGCAGCTACCCA--------ATGCACAGTAGTT-GGAGTGACTTCA-CTTTACTG-CTCCAAAAGGCAGGAAACATAAACTGGTTTCTAGAAGCCGCTCTCATCAGGTGCTAGACCCAAGTTGAATAGCAGTTTCTCCCAAGTTGGGC--ATAGTCCCTACCCTATTCTCTGCTCCATTTCAGAAGCTAGGGAGGGGGCTGTTCCTCTGTCTCCCTTGC--------------------TCCCTG-CCCAGGAGAACCAG----AGGCTG------------------CCAGAAACCCCATCCCATTTT-CCCATTGGGACCATGC
i mm10.chr16                   I 5 C 0
s canFam3.chr33                 29065725 285 +  31377067 ---CCCTAACGCCCTACCACACATACACAAAGTAGTT-TGGAGGATTTCA-CATTGTTGCCCCCAGGAGGGAGGAGGCACTGCCTGGATTC------------------AATCCCA-CCCTCAGTGACACAGCGGCTTCCGCAGGGTTTGGT--GTGGTCACTGCCTCACT------CCTA-------GGATAGG--GTGGTCTATTCCTTTCCTCCTCTGGCAAGCTTACCAACTGATCCCATTCTTGTTTCGGGGTaatcag----ggatcatcacagctgacggggacctcagaaatcccatctatttttccacatgggggtgtcaa
i canFam3.chr33                C 0 C 0
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=43435.000000
s hg38.chr3_KI270935v1_alt        120785 19 +    197351 ggcctggcctggggaaggt
s panTro4.chr3_GL389630_random     84305 19 +    103936 ggCCTGGCCTGGGGAAGGT
i panTro4.chr3_GL389630_random I 5 C 0
s nomLeu3.chr11                120857722 19 + 123690457 GGCCTGGCCTGGGGAAGGT
i nomLeu3.chr11                I 78 C 0
s rheMac3.chrUn_JH291127           29479 19 +    111706 ggcctggcctggggaagGT
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     64776 19 + 192460366 ggcctggCCTGGGGAAGGT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     61897 19 - 187378091 GGCCTGGCCTGGGGAAGGT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   413361 19 -  91754291 ggcctggCCTGGGGAAGGT
i chlSab2.chr15                C 0 C 0
s mm10.chr16                    65428003 19 -  98207768 GTTCTGGCTTGAGTTGGGC
i mm10.chr16                   C 0 I 387
s canFam3.chr33                 29066010 15 +  31377067 -gccttggatggggga---
i canFam3.chr33                C 0 C 0
e calJac3.chr17                   930142  0 -  74750902 C
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=6612.000000
s hg38.chr3_KI270935v1_alt        120804 4 +    197351 gctt
s panTro4.chr3_GL389630_random     84324 4 +    103936 GCTT
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120857741 4 + 123690457 GCTT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           29498 4 +    111706 GCTC
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     64795 4 + 192460366 GCTC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     61916 4 - 187378091 GCTC
i papAnu2.chr2                 C 0 I 296
s chlSab2.chr15                   413380 4 -  91754291 GCTC
i chlSab2.chr15                C 0 C 0
e mm10.chr16                    65428022 387 -  98207768 I
e canFam3.chr33                 29066025 0 +  31377067 C
e calJac3.chr17                   930142 0 -  74750902 C
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=4200.000000
s hg38.chr3_KI270935v1_alt        120808 2 +    197351 gG
s panTro4.chr3_GL389630_random     84328 2 +    103936 GG
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120857745 2 + 123690457 GG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           29502 2 +    111706 GG
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     64799 2 + 192460366 GG
i macFas5.chr2                 C 0 I 184
s papAnu2.chr2                     62216 2 - 187378091 GG
i papAnu2.chr2                 I 296 C 0
s chlSab2.chr15                   413384 2 -  91754291 GG
i chlSab2.chr15                C 0 C 0
e mm10.chr16                    65428022 387 -  98207768 I
e canFam3.chr33                 29066025 0 +  31377067 C
e calJac3.chr17                   930142 0 -  74750902 C
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=105.000000
s hg38.chr3_KI270935v1_alt        120810 3 +    197351 GGA
s panTro4.chr3_GL389630_random     84330 2 +    103936 GG-
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120857747 3 + 123690457 GGG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           29504 3 +    111706 GGG
i rheMac3.chrUn_JH291127       C 0 I 287
s macFas5.chr2                     64985 3 + 192460366 GGA
i macFas5.chr2                 I 184 C 0
s papAnu2.chr2                     62218 3 - 187378091 GGG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   413386 2 -  91754291 GG-
i chlSab2.chr15                C 0 C 0
e mm10.chr16                    65428022 387 -  98207768 I
e canFam3.chr33                 29066025 0 +  31377067 C
e calJac3.chr17                   930142 0 -  74750902 C
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=26624.000000
s hg38.chr3_KI270935v1_alt        120813 18 +    197351 GTGTTGA-----GGCCTGGCCTC
s panTro4.chr3_GL389630_random     84332 23 +    103936 GTGTTGAGGCCTGGCCTggcctg
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120857750 18 + 123690457 GTGTTGA-----GGCCTGGCCTG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           29794 18 +    111706 gtgttga-----ggcctcgcctg
i rheMac3.chrUn_JH291127       I 287 C 0
s macFas5.chr2                     64988 18 + 192460366 GCGTTGA-----GGCCTGGCCTG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     62221 18 - 187378091 GTGTtga-----ggcctggcctg
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   413388 18 -  91754291 GTGCTGA-----GGCCTGGCCTG
i chlSab2.chr15                C 0 C 0
s canFam3.chr33                 29066025  7 +  31377067 ----------------tggcttc
i canFam3.chr33                C 0 C 0
e mm10.chr16                    65428022 387 -  98207768 I
e calJac3.chr17                   930142  0 -  74750902 C
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=44821.000000
s hg38.chr3_KI270935v1_alt        120831  46 +    197351 -----GGGGAGGTGCTG------------------------------------------------------------------------------GGGGGTGTTGAGGCCTGGCCTGGGGAAGGTGCTG
s panTro4.chr3_GL389630_random     84355  46 +    103936 -----gggaaggtgctg------------------------------------------------------------------------------gggggtgttgaggcctggcctggggaaggtgctg
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120857768  46 + 123690457 -----GGGAAGGTGCTG------------------------------------------------------------------------------GGGGGTGTTGAGGCCTGGCCTGGGGAAGGTGCTG
i nomLeu3.chr11                C 0 I 292
s rheMac3.chrUn_JH291127           29812  46 +    111706 -----gggaaggtgctg------------------------------------------------------------------------------aggagcgttgaggcctggtctggggaaggtgctg
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     65006 124 + 192460366 -----GGGAAGGTGCTGGGGGGTGTTGAGGCCTGGCCTGGCCTGGGGAAGGTGCTGGGGGGTGTTGAGGCCTGGCCTGGCCTGGGGAAGGTGCTTAGGGGTGTTGAGGCCTGGCCTGGGGAAGGTGCTG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     62239  51 - 187378091 gccttggGAAGGTGCTG------------------------------------------------------------------------------GGGAGTATTGAggcctggcctggggaaggtgctg
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   413406  17 -  91754291 ----------------------------------------------------------------------------------------------------------------GCCTGGGGAAGGTGCTT
i chlSab2.chr15                C 0 C 0
e mm10.chr16                    65428022 387 -  98207768 I
e canFam3.chr33                 29066032   0 +  31377067 C
e calJac3.chr17                   930142   0 -  74750902 C
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=43111.000000
s hg38.chr3_KI270935v1_alt        120877 28 +    197351 GGGGGTGTTGAGGCCTGGCCTG----------------------------------GCCTGG
s panTro4.chr3_GL389630_random     84401 28 +    103936 gggggtgttgaggcctggcctg----------------------------------gcctgg
i panTro4.chr3_GL389630_random C 0 I 224
s nomLeu3.chr11                120858106 28 + 123690457 GGGGGTGTTGAGGCCTGGCCTG----------------------------------GCCTGG
i nomLeu3.chr11                I 292 I 34
s rheMac3.chrUn_JH291127           29858 28 +    111706 gggggtgttgaggcctggcctg----------------------------------gcctgg
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     65130 62 + 192460366 GGGGGTGTTGAGGCCTGGCCTGGCCTGGGGAAGGTGCTTGGGGGTGTTGAGGCCTCGCCTGG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     62290 23 - 187378091 gggggtgttgaggcctg---------------------------------------gcctgg
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   413423 28 -  91754291 GGGGGTGTTGAGGCCTGGCCTG----------------------------------GCCTGG
i chlSab2.chr15                C 0 C 0
e mm10.chr16                    65428022 387 -  98207768 I
e canFam3.chr33                 29066032  0 +  31377067 C
e calJac3.chr17                   930142  0 -  74750902 C
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=60594.000000
s hg38.chr3_KI270935v1_alt        120905 32 +    197351 GGAAGGTGCTGGGGGGTGTTGAGGCCTGGCCT
s panTro4.chr3_GL389630_random     84653 32 +    103936 ggaaggtgctggggggtgttgaggcctggcct
i panTro4.chr3_GL389630_random I 224 C 0
s nomLeu3.chr11                120858168 32 + 123690457 GGAAGGTGCTGGGGGGTGTTGAGGCCTGGTCT
i nomLeu3.chr11                I 34 C 0
s rheMac3.chrUn_JH291127           29886 32 +    111706 agaaggtgctggggggtgttgaggcctggcct
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     65192 32 + 192460366 GGAAGGTGCTGAGGGGTGTTGAGGCCTGGCCT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     62313 32 - 187378091 ggaaaatgctggggggtgttgaggcctggcct
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   413451 32 -  91754291 GGAAGGTGCTGGGGAGTGTTGAGGCCTGGCCT
i chlSab2.chr15                C 0 C 0
e mm10.chr16                    65428022 387 -  98207768 I
e canFam3.chr33                 29066032  0 +  31377067 C
e calJac3.chr17                   930142  0 -  74750902 C
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=41305.000000
s hg38.chr3_KI270935v1_alt        120937 17 +    197351 GGCCTGGGGAAGGTGCT
s panTro4.chr3_GL389630_random     84685 17 +    103936 ggcctggggAAGGTGCT
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120858200 17 + 123690457 GGCCTGGGGAAGGGGCT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           29918 17 +    111706 ggCCTGGGGAAGGTGGT
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     65224 17 + 192460366 GGCCTGGGGAAGGTGGT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     62345 17 - 187378091 ggcctggggaaGGTGGT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   413483 17 -  91754291 GGCCTGGGGAAGGTGGT
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   930142 17 -  74750902 GGCCTGGGGAAGGTGCT
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65428022 387 -  98207768 I
e canFam3.chr33                 29066032  0 +  31377067 C
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=578372.000000
s hg38.chr3_KI270935v1_alt        120954 252 +    197351 TGCACAGGGTGACACCATTTCAGGGAGTAGTTGCCTCTGTCCCTGG--CCAGTCTCCAGTCTCCAGCTTCATATCCTCCCGCTGGAGAGCAGAGACGATGGGGGTGTCCCTGTGTATGCTT---AAGTGCAATGGCATTTTAAGAAAACTATTAGCAATTTTAT-----GAAACTAAATTGCTGCTGTTTTATTAGCAGCCACAGTCAGCAAGGCCCTGGCT-GGGTGCTTGCTCCGTGAAGCTGTATACGTGTGACTGCCTC-
s panTro4.chr3_GL389630_random     84702 252 +    103936 TGCACAGGGTGACACCATTTCAGGGAGTAGTTGCCTCTGTCCCCAG--CCAGTCTCCAGTCTCCAGCTTCATATCCTCCCGCTGGAGGGCAGAGACGATGGGGGTGTCCCTGTGTATGCTT---AAGTGCAATGGCATTTTAAGAAAACTATTAGCAATTTTAT-----GAAACTAAATTGCTGCTGTTTTATTAGCAGCCACAGTCAGCAAGGCCCTGGCT-GGGTGCTTGCTCCGTGAAGCTGTATACGTGTGACTGCCTC-
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120858217 252 + 123690457 TGCACAGGGTCACATCATTTCAGGGAGTAGTTGCCTCTGTCCCTGG--CCAGTCTCCAGTCTCCAGCTTCATATCCTCCCGCTAGAGGGCAGAGACGATGGGGGTGTCGCTGTGTATGTTT---AAATGCAATGGCATTTTAAGAAAACTATTAGCAATTTTAT-----GAAAATGAATTGCTGCTGTTTGATTAGCAGCCACAGTCAGCAAGGCCCTGGCT-GGGTACTTGCTCTGTGAAGCTGTCTGCATGTGACTGCCTT-
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           29935 252 +    111706 TGCACAGGGTCACATCATTTCAGGGAAGAGTTGCCTCTGTCCCTGG--CCAGTCTCCAGTCTCCAGCTTAATAGCCTGCAGCTGGAGGACAGACATGATGGGGGTGTCCTTGTGTATGTTT---AAGTGCAATGGCATCTTAAGAAAACTATTAGCAATGTTAT-----GAAAATAAATTGCTGCTGTTTTATTAGCGGCCACAGTCAGCAAGGCCCTGGCT-GAGTACTTGCTCTGTGAAGCTGCATACATGGGACTGCCTT-
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     65241 252 + 192460366 TGCACAGGGTCACATCATTTCAGGGAAGAGTTGCCTCTGTCCCTGG--CCAGTCTCCAGTCTCCAGCTTAATAGCCTGCAGCTGGAGGACAGACATGATGGGGGTGTCCTTGTGTATGTTT---AAGTGCAATGGCATCTTAAGAAAACTATTAGCAATGTTAT-----GAAAATAAATTGCTGCTGTTTTATTAGCGGCCACAGTCAGCAAGGCCCTGGCT-GAGTACTTGCTCTGTGAAGCTGCATACATGGGACTGCCTT-
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     62362 252 - 187378091 TGCACAGGGTCACATCATTTCAGGGAAGAGTTGCCTCTGTCCCTGG--CCAGTCTCCAGTCTCCAGCTTAATAGCCTGCAGCTGGAGGACAGACATGATGGGGGTGTCCTTGTGTATGTTT---AAGTGCAATGGCATCTTAAGAAAACTATTAGCAATGTTCT-----GAAAATAAATTGCTGCTGTTTTATTAGCGGCCACAGTCAGCAAGGCCCTGGCT-GAGTACTTGCTCTGTGAAGCTGCATACATGGGGCTGCCTT-
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   413500 252 -  91754291 TGCACAGAGTCCCATCATTTCAGGGAAGAGTTGCCTCTGTCCCTGG--CCAGTCTCCAGTCTCCAGCTTAATATCCTGCAGCTGGAGGACAGACATGATGGGGGTGTCCTTGTATATGTTT---AAGTGCAATGGCATTTTAAGAAAACTATTAGCAATGTTAT-----GAAAATAAATTGCTGCTGTTTTATTAGCAGCCACGGTCAGCAAGGCCCTGGCT-GGGTACTTGCTCTGTGAAGCTGCATACATGTGACTGTCTT-
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   930159 216 -  74750902 TGCA--------GATCATTTCCGGG------------------------------CCAGTCTCCAGCTTCACACCCACCAGCTGGAGGGCAGAGATGACGGGAATGCCCTTGTGTAGGTTT---AAGTGCAATGGCACTTTCAGAAAACCAGTAGCAATTTTAT-----GAAAACAAATTGCTGCTGTTTCCTGAGCAGCGGCAGTCAGCAAGGCTGGGCCG-GAGCACTCGCTCTGTGAAACCGCAGGCACGTGGCTGCCTT-
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29066032 250 +  31377067 tgcacagggtcacCC---TTCAAGGAGGGGAAACCTCTGCCCCTAGGTCAGGTCTCCAGCCTTCAACTGAATTTCCTCCAGCTGGAGGGCAAAGGCAAAAGGGATGTCCTTGTTTATGTTTATAAAGCACAATGGTTTTTTAACAAAATCATTACCAATTTCATCAAAAGAAAGAAAACCG-----------TCAGCAGTGATGGTCAGGAAGGTGGCAATTAGAGTAATTGGTCTGTGAAACCATATCCCTGGGGACTCACCA
i canFam3.chr33                C 0 C 0
e mm10.chr16                    65428022 387 -  98207768 I
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=1598132.000000
s hg38.chr3_KI270935v1_alt        121206 588 +    197351 AGCAGTGCTGGCTGCTCCTGCTCTCGAATCTAAAAA--GCAGCTGGACAAAATGTTC-ACGTTTTCGCTCAAAACCAAACAAACAGAAAAACTCAATTAGCTTGTTT---GTGTGGGC-----TGAAGCA-CCTCTGTTTGCCC------------------------------GCCCCCCGCAGT------------GACCCCCATAGTGTCCCCGGAATGGACGGACTCACGGGCTGTCACATCGCGCACGTCTTCCCCGGAGATGGGCTGGAAGACCACGTCGTTCCTGGGCTCCTCACTCCT------------CCGTGGAAC---GTGGTATAAGAACGCCTCCACCACCGCGGCCAGCAGCTGGTTGTTCAGGAAGTCAATGACCGGGCCCCGAGGGCGGTACTGGAACTCCGAGATGACCATCCAGTGTTGGATGGGGCTTCCCGAGGCCGGTGCTGC---AGAATCGCTGTGTGGGAGGGCAACGGTGA--------gggggggtggggggctgggggtgggggatgaggaaga-gatctgggggctTA-GGGGGACACAGTCCCACTTACATTC------GTTCCACTTGGCTGTTGCGGAGAAAGGCCCGCATGTCCAGGGTCCCCAGTCTGTATGCCACCTAGGTTAGAGGATG-GCAGATGG--GGG--
s panTro4.chr3_GL389630_random     84954 596 +    103936 AGCAGCGCTGGCTGCTCCTGCTCTTGAATCTAAAAA--GCAGCTGGACAAAATGTTC-ACGTTTTCGCTCAAAACCAAACAAACAGAAAAACTCAATTAGCTTGTTT---GTGTGGGC-----TGAAGCA-CCTCTGTTTACCC------------------------------GCCCCCCGCAGT------------GACCCCCATAGTGTCCCCGGAATGGACGGACTCACGGGCTGACACGTCGCGCACGTCTTCCCTGGAGATGGGCTGGAAGACCACGTCGTTCCTGGGCTCCTCACTCCT------------CCGTGGAAC---GTGGTATAAGAACGCCTCCACCACCGCGACCAGCAGCTGGTTGTTCAGGAAGTCAATGACGGGGCCCCGAGGGCGGTACTGGAACTCCGAGATGACCATCCAGTGTTGGATGGGGCTTCCCGAGGCCGGTACTGC---GGAATCGCTGTGTGGGAGGGCAACGGTGAggggggctggggggctggggggctgggggTGGGGGATGAGGAAGA-GATCTGGGGGCTCA-GGGGGACACAGTCCCACTTACATTC------GTTCCACTTGGCTGTTGCGGAGAAAGGCCCGCATGTCCAGGGTCCCCAGTCTGTATGCCACCTAGGTTAGAGGATG-GCGGATGG--GGG--
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120858469 584 + 123690457 AGCAGCGCTGGCTGCTCCTGCTCCTGAATCTAAAAA--GCAGCTGGATAAAATGTTC-ACGTTTTCGCTCAAAAC----CAAACAGAAAAACTCAGTTAGCTTGTTT---GTGTGGGC-----TGAAGCA-CCTCTGTTTACCC------------------------------GCCCCCCGCAGT------------GACCCCCATACTGTCCCCGGAATGGACGGACTCACGGGCTGACACGTCGCGCACGTCTTCCCTGGAGATGGGCTGGAAGACCACGTCATTCCTGGGCTTCTCACTCCT------------CCGTGGAAC---ATGGTATAAGAACGCCTCCACCACCGCGGCCAGCAGCTGGTTGTTCAGGAAGTCGATGACAGGGCCCCGAGGGCGGTACTGGAACTCTGAGATGACTACCCAGTGTTGAATGGGGCTTCCCGAGGCCGGTGCTGG---GGAATCGCTGTGTGGGAGGGCGACAGTGA---------GGGGGCTGGGGGGCTGGGGGTGGGGGATGAGGAAGAGGATCTGGGGGCTCA-GGGAGACACAGTCCCACTTACATTT------GTTTCACTTGGCTGTTGTGGAGAAAGGCCCGCATGTCCAGGGATCCCAGTCTGTATGCCACCTAGGCCAGAGGATG-GGGGATGG--GGG--
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           30187 584 +    111706 AGCAGTGCTGGCTACTCCTGCTCTTGAATCTAAAAG--GAAGCTGGATAAAATGTTC-ACGTTTTCTCTCAAAACCAAGCAAACAGAAAAACTCAACTAACTTGTTT---GTGTGGGC-----GGAAGCA-CCTCCGTTTACCC------------------------------GCCCCCTGCAGT------------GACCCCCACATTGTCCCTGGAATGGATGGACTCACGGGCTGTCACATCCCACACGTCTTCCCTGGAGATGGGCTGGAAGACCACGTGGTTCCTGGACTCCTCCCTCCT------------CCGTGGAAC---CTGGTAGAAGAACGCCTCCACTACCGCAGCCAGCAGCTGGTTGTTCAGGAAGTCGATGACGGGGCCCCAAGGGCGGTACTGGAACTCCGAGATGACCATCCAGTGTTGAATGGGGCTTCCCGAGGCAGGTGCTGG---GGAATCGCTGTGTGGGAGGGTGACGGTGA--------GGGGGGCCAGGGAGC-------GGGGGATGAGGAAGAGGACCTGGGGGCTCA-GGGGGACACAGTCCCACTTACATTC------GGTTCACTTGGCTGTTGCGGAGAAAGGCCCGCATGTCCAGGGTCCCCAGTATGTATGCCACCTAGGACAGAGGATG-GGGGATGGGCGGG--
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     65493 584 + 192460366 AGCAGTGCTGGCTGCTCCTGCTCTTGAATCTAAAAG--GAAGCTGGATAAAATGTTC-ACGTTTTCTCTCAAAACCAAGCAAACAGAAAAACTCAACTAACTTGTTT---GTGTGGGC-----GGAAGCA-CCTCCGTTTACCC------------------------------GCCCCCTGCAGT------------GACCCCCACATTGTCCCTGGAATGGATGGACTCACGGGCTGTCACATCCCACACGTCTTCCCTGGAGATGGGCTGGAAGACCACGTGGTTCCTGGACTCCTCCCTCCT------------CCGTGGAAC---CTGGTAGAAGAACGCCTCCACTACCGCAGCCAGCAGCTGGTTGTTCAGGAAGTCGATGACGGGGCCCCAAGGGCGGTACTGGAACTCCGAGATGACCATCCAGTGTTGAATGGGGCTTCCCGAGGCAGGTGCTGG---GGAATCGCTGTGTGGGAGGGTGACGGTGA--------GGGGGGCCAGGGAGC-------GGGGGATGAGGAAGAGGACCTGGGGGCTCA-GGGGGACACAGTCCCACTTACATTC------GGTTCACCTGGCTGTTGCGGAGAAAGGCCCGCATGTCCAGGGTCCCCAGTATGTATGCCACCTAGGACAGAGGATG-GGGGATGGGCGGG--
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     62614 584 - 187378091 AGCAGTGCTGGCTGCTCCTGCTCTTGAATCTAAAAG--GAAGCTGGATAAAATGTTC-ACGTTTTCTCTCaaaaccaagcaaacagaaaaactcAACTAACTTGTTT---GTGTGGGC-----GGAAGCA-CCTCCGTTTACCC------------------------------GCCCCCTGCAGT------------GACCCCCACACTGTCCCCGGAATGGATGGACTCACGGGCTCTCACATCCCACACGTCTTCCCTGGAGATGGGCTGGAAGACCACGTGGTTCCTGGACTCCTCCCTCCT------------CCGTGGAAC---CTGGTATAAGAACGCCTCCACCACCGCAGCCAGCAGCTGGTTGTTCAGGAAGTCGATGACGGGGCCCCAAGGGCGGTACTGGAACCCCGAGATGACCATCCAGTGTTGAATGGGGCTTCCCGAGGCAGGTGCTGG---GGAATTGCTGTGTgggagggtgacggtga--------ggggggccagggagc-------gggggatgaggaagaggacctgggggctca-gggggaCACAGTCCCACTTACATTC------GGTTCACTTGGCTGTTGCGGAGAAAGGCCCGCATGTCCAGGGTCCCCAGTATGTATGCCACCTAGGACAGAGGATG-GGGGATGGGCGGG--
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   413752 582 -  91754291 ---AGTGCTGGGTGCTCCTGCTCTTGAATCTAAACG--GAAGCTGGATAAAATGTTC-ACGTTTTCTCTCAAAACCAAGCAAACAGAAAAACTCAACTAACTTGTTT---GTGTGGGC-----GGAAGCA-CCTCCGTTTACCC------------------------------ACCCCCTGCAGT------------GACCCCCACACTGTCCCCGGAATGGATGGACTCACGGGCTGTCACATCCCACACGTCTTCCCTGGAGATGGGCTGGAAGACCACGTGGTTCCTGGACACCTCACTCCT------------CCGTGGAAC---CTGGTATAAGAACGCCTCCACCACTGCAGCCAGCAGCTGGTTGTTCAGGAAGTCGATGACGGGGCCCCAAGGGCGGTACTGGAACTCCGAGATGACCCTCCAGTGTTGAATGGGGCTTCCCGAGGCCGGTGCTGG---GGAATCGCTGTGTGGGAGGGTGACGGTGA--------GGGGGGCCAGGGAGC-------GGGGGATGAGGAAGAGGACCTGGGGGCTCAGGGGGGACACAGTCCCACTTACATTC------GGTTCACTTGGCTGTTGCGGAGAAAGGCCCGCATGTCCAGGGTCCCCAGTATGTACGCCACCTAGGACAGAGGATG-GGGGATGGGCGGG--
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   930375 574 -  74750902 AGCAGCACT------TCCTGCTCTTGAATCTAAAAA--GCGGATGGATAAAATGTTC-ACGTTTTCTCTCAGAATCAAACAA--AGAAAAACTAAATTAACTTGCAT---GTGTGGGC-----TGAAGCACCCTCGGTTTACCC------------------------------GCCCCCCCCCAG------------TCACCCCACACTGTCCCCGGGATGGACTGACTCACGGGCCGCCACATCGCGCACGTCTTCCCTGGAGAGGGGCTGGAAGACCACGTCGTTCCTGGGCTCCTCACTCCT------------CCGGGGAACATGCTGGTGTAAGAACGCCTCCACCACCGCGGCCAGCAGCTGGTTGTTCAGGAAGTGGATGACAGGGCCCCAAGGGCGGTACTGGAACTGCGACATGACCGTCCAGTATTGCATGGGGCTTCCTGAGGCTGGTGCTGG---GGAATCGCTGTATGGGAGGGCAACGGTGA--------GGGGGGCTGGGGGCC-----------GGTGAGGAAGAAGACGTGGGGGCTCA--GGGGTCACCGTCCCACTTACATTT------GGTTCACTTCGCTGTTGTAGAGAAAGGCCTGCCCGTGCAGGGTCCGCAGTCTGTACGCCACCTAGGGCAGAGGATGAGGGAATGG--GGG--
i calJac3.chr17                C 0 I 257
s mm10.chr16                    65428409 633 -  98207768 AGCTACATCTTGTGTCCCTGTTC-TGAGTCTAAAAGTAGCTGTTGTGGGAAGTTTTA-AA---TTCATTCAAAGATTTACAGACATCCAAGCTAACTTAACCTGCTTCAGCTGTGGACCTGCTGCACACA-TTACTTTCTACCAAGGGTTGACATGGCCTGCAGATCTGTCATGGCCCTCTGCTTTTCTCCTCTAACAAATCCCTCCATTGTCTCCAAGATAG--TGACTCACGAGCCATCTGGTCCTGGACATCTGCCCTCGAGATGGGGAAGAAGTGGACGTCCTTCCTGGCTTCTCCACTCCTCTTCTGCCTCTCCTGCCGAGC---CTGCAGGAGGAAGGCCTCCATCACGGCGCCTATCAGCTGGTTGTTCAGATAGTGGATGAGCGGGCCCCTGGGACGGTACTTGAAGTGGGAGGTGACCTTCCAGTGATGAATGGACTTGCTCGAGGGCTGTGCTCC---GGGAGAGCTGTATGGAAGGGGTACAGTG---------GGGGGTTTGAGGAGC-------AGGAGA-GAGGGAGA------GGGGAGCCA-TGGGGG-ACAGCTTCACTTACGTTCGTATCAGTTCCACTAAGCTGTTGGAGAAAAAAGCCCGCATGTCCAGGTTCTCTAGTATGTTCGCCACCTACAATGGAGGAAG-----ATGG--GGG--
i mm10.chr16                   I 387 I 1
s canFam3.chr33                 29066282 562 +  31377067 AGCAATGTTTGGTGCT-CTGCTCTTGAGTCTAGAAA--GCTGGTGGGTGAAATGTTTAACGATTTCCCTCAAAAAT-----GATAAAAAAA-------------------ATCTAGTC-------------CCCCTGTTCACCT------------------------------GCCCCCTTGGCT------------GTCTCTGTGACTATGGCCAGGA--GAGTGACTCACGAGCCAGCACACTGTGCACGTCTTCCCTGGAGATGGAGTGGAAGTTCACGTCGGTCCTGGGCCTCCCACTTCTGTTCTTCCTCCACCACGAGGC---CTGGGGTAAGAACGCTTCCACCACTGCATCCAGCAGCTTGGTGTTCAGGAAGTCGATGACGGGACCCTGAGGAAGGTACTGGAACTTCGAGAAGACTCTCCAGTGTCTACGTAAACTTCCCGAGGCCGGCGCTGCACTGGAATTGCTGCGTGGGAGGGGCACCGTGA---------GGTGGTAAGGGTGC-------AGGTG--GAGGGGGGAGACGCGGGGGCCAA-GGGGG--ACAGTCCCACTTACATCT------GTAGCACTTCGGAGTTCTGGAGAAAGGCCCGCACATTCAGGTTCCCCAGTCTGTAGGCCACCTAGGGCA-AGGATG-GGGG-TGG--GGGCG
i canFam3.chr33                C 0 C 0
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=737302.000000
s hg38.chr3_KI270935v1_alt        121794 397 +    197351 TGG--GGGTG---AGGCCCCATCCGGGGGGGAGAC-------------------------------------------------------------------------------------------------------------------GCCCTCCCACCTTGATGGGTGTATTCATCC----CTGTTTCCTCCTGGAACGGGAGCCCCAGGACCC-CAGCACCTTCCTCACCTGTCTCTGCACCCTTGCACTCTAGCCTAGCTCAGTGAGTGTCATGGGTCCTTGCTTAAT-AATGTTTGTT-GAGAGTGAAGGGTTTTCCATTCTGTCCCCC-CCTCAGCCTC-ATATGACGAGCAGAGAATCTGACATGAATGGCCCCTACCT-TGCCTCTGACACA----TGACTCATGACCT-------CCTCCCCAGTATATTGaacatggg----ttgtt------tagacc----taggagatggtc-ggggctgggggtgtcaaggtgacttaggtggagtctaaactcaaagagtgcattgtctggcgcagg
s panTro4.chr3_GL389630_random     85550 397 +    103936 TGG--GGGTG---AGGCCCCATCCAGGGGGT-GAC-------------------------------------------------------------------------------------------------------------------GCCCTCCCACCTTGATGGGTGTATTCATCC----CTGTTTCCTCCTGGAACGGGAGCCCCAGGACCC-CAGCACCTTCCTCACCTGTCTCTGCACCCTTGCACTCTAGCCTAGCTCAGTGAGTGTCACGGGTCCTTGCTTAAT-AATGTTTGTT-GAGAGTGAAGGGTTTTCCATTCTGTCCCCG-CCTCGGCCTC-ATATGACGAGCAGAGAATCTGACATGAATGGCCCCTACCT-TGCCTCTGACACA----TGACTCATGACCT-------CCTCCCCAGTATATTGAACATGGG----TTGTT------TAGCCC----TAGGAGATGGTCAGGGGCTGGGGGTGTCAAGGTGAGTTAGGTGGAGTCTAAACTCAAAGAGTGCACCATCTGGCGCAGG
i panTro4.chr3_GL389630_random C 0 I 840
s nomLeu3.chr11                120859053 398 + 123690457 TGG--GGGTG---AGGACCCATCCAGGGGGGAGAC-------------------------------------------------------------------------------------------------------------------CCCCTCCCACCTTGATGGGTGTATTCATCC----CTGTTTCCTCCTGGAACGCAAGCCCTAGGACCC-CAGCACCTTCCTCACCTGTCTCTGCACCCTCACACTCTGGCCTAGCTCAGTGACTGTCATGGGTCCTTGTTTCAT-AATGTTTGTT-GAGAGTGAAGGGTTTTCCATTCTGTCCCCCTCCTTGGCCTC-ATATGACGAGCGGGGAATCTGACATGAATGGCCCCTACCT-TGCCTCTGATGCA----TGACTCATGACCT-------CCTCCCC-GTATATTGAACATGGG----TTGTT------TAGACC----TAGGAGATGGTCAGGGGCTGGGGGTGTCAAGGTGACTTAGGTGGAGTGTAAACTCAAAGAGTGCATTGTCTGGCGCAGG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           30771 356 +    111706 TGG--GGGTG---AGGCCCCATCCAGAGGGGAGAT-------------------------------------------------------------------------------------------------------------------CCCCTCCCACCTTGATGGGTGTATTCATCC----CTGTTTCCTCCTGGAACGGGAGCCCCAGGACCC-CAGCACATTCCTCACC-ATCTCTGCATCCTCGCACTCTAACCTAGCCCAGTGACTGTCGCGGGTCCTTGCTTAAT-AATGTTTGTT-GTGAGTGAAGGGTTTTCCATTCTGTCCCCCTCCTCAGCCTC-------------------------------------------GCCTCTGATGCA----TGACTCATGACC--------CCTCCACAGTATACTGAACATGGG----TTAAG------TAGACC----TAGGAGGTGGTCAGGGGCTGTGGGTGTCAAGGTGACTTAGGTGGAGTCTAAACTCAAAGAGTGCATAGTCTGGTGCAGG
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     66077 440 + 192460366 TGG--GGGTG---AGGCCCCATCCAGAGGGGAGATCCCCTCCCACCTTG-----------CATC---AATACATACACCTTGATGCATGTATTCATCCCTGTTTCCTCCTGGAACAG-----------------GAGCCCCAGGGGAGACCCCCTCCCACCTTGATGGGTGTATTCATCC----CTGTTTCCTCCTGGAACGGGAGCCCCAGGACCC-CAGCACATTCCTCACC-GTCTCTGCATCCTCGCACTCGAACCTAGCCCAGTGACTGTCGCGGGTCCTTGCTTAAT-AATGTTTGTT-GTGAGTGAAGGGTTTTCCATTCTGTCCCCCTCCTCAGCCTC-------------------------------------------GCCTCTGATGCA----TGACTCATGACC--------CCTCCACAGTATACTGAACATGGG----TTAAG------TAGACC----TAGGAGATGGTCAGGGGCTGTGGGTGTCAAGGTGACTTAGGTGGAGTCTAAACTCAAAGAGTGCATAGTCTGGTGCAGG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     63198 421 - 187378091 TGG--GGGTG---AGGCCCCATCCAGAGGGGAGATCCCCTCCCACCTTGATGCATGTATTCATCCCTGTT---------------------------------TCCTCCTGGAACAG-----------------GAGCCCCAGGGGAGACCCCCTCCTACCTTGATGGGTATATTCATCC----CTGTTTCCTCCTGGAACGGGAGCCCCAGGACCC-CAGCACATTCCTCACC-ATCTCTGCATCCTCGCACTCTAACCTAGCCCAGTGACTGTCGCGGGTCCTTGCTTAAT-AATGTTTGTT-GTGAGTGAAGGGTTTTCCATTCTGtccccctcctcagcctc-------------------------------------------gcCTCTGATGCA----TGACTCATGACC--------CCTCCACAGTATACTGAACATGGG----TTAAG------TAGACC----TAGGAGGtggtcaggggctgggggtgtCAAGGTGACTTAGGTGGAGTCTAAACTCAAAGAGTGCATAGTCTGGTGCAGG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   414334 418 -  91754291 TGG--GGGTG---AGGCCCCATCCAGAGGGGAGACCCCCTCCCACCTTGATGCATGTATTCATC--------------------------------------------------CCTGTTTCCTCCTGGAACAGGAGCCCCAGGGGAGACCCCCTCCCACCTGGATGGGTGTATCCATCC----CTGTTTCCTCCTGGAACGGGAGCCGCAGGACCC-CAGCACATTCCTCACC-GTCTCTGCATCCTCGCACTCTAACCTAGCCCAGTGACTGTCGCGGGTCCTTGCTTAAT-AATGTGTGTT-GTGAGTGAAGGGTTTTCCGTTCTGT-CCCCTCCTCAGCCTC-------------------------------------------GCCTCTGATGCG----TGACTCATGACC--------CCTCCCCAGTGTACTGaacatggg----ttaag------tagacc----taggaggtcgtcaggggctgggggtgtcaaggtgactcaggtggagtctaaactcaaaga--gcacagtctggtgcagg
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   931206 396 -  74750902 TGGGTGGGTG---AGGCCCCATACACAGAGGAGAG-------------------------------------------------------------------------------------------------------------------CCTCTCCCGCCTTGATCCGTTTATTCACCC----CTGTTTCCTCCTTGAATGTGAGTCCCAGGACCT-GGATACATTTCTCACCTATCTCTGCATCCTCGCCCTCTAGCCTAGTCCAGTGACGGTCACGGGTCCTTGTTTAAT-A------TTT-GTGAGGGGAGGGTTTTCCATTCTCTCCCCATCCTAGGCCTC-ATATGACAAGCGGAGAATCTGATGTGCATGGCCCCTCCTT--GCCTCTGGTCCA----CGACTCTTGGCCC-------CTGCCCCAGTATATTGGACATCGA----TTGTT------TAGGCAGAAGTAGGAGCTGGTCAGGTGCTGCAGGTGTCAAGGTGACTTAGGAGGAGTCTAAATTC--AGAGTGCATAGTCTGGTGCAGG
i calJac3.chr17                I 257 C 0
s mm10.chr16                    65429043 332 -  98207768 TGG--GAGGATATAGGCCTAATGAGGATTAGAGAG---------------------------------------------------------------------------------------------------G---------------TCTCTCCCAATT---------------------------------TTGAATGTGGGGCCTAG-------------------ATTGCTCTTTTCATTCCCACACCCAGGCTCAGGTCAGTGACTGACCTGGGTCCTTGCTTAAT-AA-ATATTCA-GTGGGTGAAGAATGTGGCATTCTTCC-----CTTCTGCCATAATGTTGCCAGGGGAACATGTGAGACGAAC-------------ATCTCTGCTCCATCTCTGATCCCAGTCC--------ACCCTCATATGTACCAAACACAAACTCTTCAGC------TAAGCC----CTAGAGATGTCCAGGTGCCAGGAATGTC------ACCTG--------TTATATCCAAAGAGCCTTTGGTCAAGGGCAGC
i mm10.chr16                   I 1 C 0
s canFam3.chr33                 29066844 390 +  31377067 TGG--GAGTG---AGGCCCCACCCGAAGAGGACA--------------------------------------------------------------------------------------------------------------------CCTCTCCCACTTGCATGTACTTATTTGTCCACATCTGGCTCCGTTTTGCACACGAGCACCAGGACCCACAGACTGCTTCTCACC---ATCTGCATCCCCACGCCCCAGCCTAGCCTGGTGGCCCTCGTGGGTCCCTGCTTACTGAACATTTGCTGGAGAGTCAAGGACTCTGCACACC--------TCCCTGCCTC-CCATGACAAGGGGGGAATCTGAAATGAGTGGCCCCTACCTTTGCCTCCGCCCCC----TGACTCACGCTCTCGTTCTCGCCCCACATGTTTTTAAACATTGA----TTATGTCCAGCTAGACC----TAGGGGATGGTCGGGTGCTGGGG--GTCAAGCTGACTCAGG----------------AAAGACCCCTAGTTGGTGAAGT
i canFam3.chr33                C 0 C 0
e ponAbe2.chr3                 199759195 20226 + 202140232 M

a score=50473.000000
s hg38.chr3_KI270935v1_alt        122191 28 +    197351 tgacaaatgtcaacagaTTTTACCGTGT
s nomLeu3.chr11                120859451 28 + 123690457 TGACAAATGTCAACAGATTTTACCGTGT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           31127 28 +    111706 TGACAAATGTCAACAGATTTTACCACgt
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     66517 28 + 192460366 TGACAAATGTCAACAGATTTTACCACGT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     63619 28 - 187378091 TGACAAATGTCAACAGATTTTACCAtgt
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   414752 26 -  91754291 tgac--acgtcaacagaTTTCACCATGT
i chlSab2.chr15                C 0 I 722
s calJac3.chr17                   931602 23 -  74750902 TGACAAATGGCAACAGATTTTAC-----
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65429375 28 -  98207768 AGATGAATGTCATCAGACCTGATTCGTT
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29067234 28 +  31377067 AGACAGGTGTCAACGGACTTCCCCTTAC
i canFam3.chr33                C 0 C 0
e ponAbe2.chr3                 199759195 20226 + 202140232 M
e panTro4.chr3_GL389630_random     85947 840 +    103936 I

a score=12867.000000
s hg38.chr3_KI270935v1_alt        122219 14 +    197351 GGAGTGTGGAGTGG
s ponAbe2.chr3                 199779701 14 + 202140232 ggagtgaggagtgg
i ponAbe2.chr3                 M 20226 C 0
s nomLeu3.chr11                120859479 14 + 123690457 GGAGTGTGGAATGT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           31155 14 +    111706 ggagtggggagtgg
i rheMac3.chrUn_JH291127       C 0 I 317
s macFas5.chr2                     66545 14 + 192460366 ggagtggggagtgg
i macFas5.chr2                 C 0 I 358
s papAnu2.chr2                     63647 14 - 187378091 ggagtggggagtgg
i papAnu2.chr2                 C 0 I 438
s chlSab2.chr15                   415500 14 -  91754291 GGAGTGTGGAGTGG
i chlSab2.chr15                I 722 C 0
s calJac3.chr17                   931625  2 -  74750902 ----------AT--
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65429403 12 -  98207768 GGGATTTAATGT--
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29067262 10 +  31377067 AGGGTCTAGA----
i canFam3.chr33                C 0 C 0
e panTro4.chr3_GL389630_random     85947 840 +    103936 I

a score=183527.000000
s hg38.chr3_KI270935v1_alt        122233 94 +    197351 GGAGTGCTAGGCTTGCAGTAGTGataatag---cagtcatcatgtttgaatac-----ttgtgtgtcaggcactggactaaatgcttgacacgcgttatcat
s ponAbe2.chr3                 199779715 90 + 202140232 ggagtgCTAGGCTTGCAGTAGTAA-aataa------tcatcatgtttgaatac-----ctgtgtgtcaggcactggactaaatgcttgacacacgttctcat
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120859493 91 + 123690457 GGAGTGCTAGGCTTGCAGTAGTaataatag------caatcatgtttgaatac-----ttgtgtgtcaggcactggactaaatgcttgacacacgttatcat
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           31486 91 +    111706 ggagtgCTATGTGTGCAGTAGTaataatag---caattacaatgtttgaatac-----ttgcgtgtcgggcaccgtactaaatgcttgacgcac---atcat
i rheMac3.chrUn_JH291127       I 317 C 0
s macFas5.chr2                     66917 91 + 192460366 ggagtgCTATGTGTGCAGTAGTaataatag---caattacaatgtttgaatac-----ttgtgtgtcgggcaccgtactaaatgcttgacgcac---atcat
i macFas5.chr2                 I 358 C 0
s papAnu2.chr2                     64099 91 - 187378091 ggagtgCTATGTGTGCAGTAGTAATAATAG---CAATTACAATGTTTGAATAC-----TTGCGTGTCGGGCACCGTACTAAATGCTTGACGCAC---ATCAT
i papAnu2.chr2                 I 438 C 0
s chlSab2.chr15                   415514 91 -  91754291 GGAGTGCTATGCTTGCAGTAGTaataatag---caattagaatgtttgaatac-----ttgcgtgtcgggcaccgtactaaatgcttgacgcac---atcat
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   931627 87 -  74750902 GGAGTGCCACGCTAACAGCAGTAATAACAA------AAATAGTTTTCGAATAC-----CTGTGTGTCGGCCACCATAC----TGCTTTACATGCATTGTTAT
i calJac3.chr17                C 0 I 2038
s mm10.chr16                    65429415 86 -  98207768 ------CTCTGGCAGTCAGGGTATTAATag---taataatcactttgaattatgcctgttgtgtttcag------tactaagtgctttacacta-ttatcat
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29067272 96 +  31377067 -TGCTGTTGTACCAGCAGTAGGAATAATTATTATCATtataatttttgagcac-----ttgtattttaggcaccatggtaagcgctttacatacattatcat
i canFam3.chr33                C 0 C 0
e panTro4.chr3_GL389630_random     85947 840 +    103936 I

a score=379268.000000
s hg38.chr3_KI270935v1_alt        122327 180 +    197351 ttaaacggtgatacggcctgttgactcaggtgc----tatgattgtccctgtgtttacagatgacctgttat--atgatgtgtctagttagcacacctgctctagtga----------------------ggggcagagcagggattctgattctgggtgtgcaggattctacagcccCAACCACTCAGCAGTTGTGCCACTTTGCCT
s ponAbe2.chr3                 199779805 180 + 202140232 ttaaacggtgatacggcctgttgactcaggtgc----tatgattgtccccgtgtttacagatgacctgttat--atgatgtgtctagttagcacacctgctccagtga----------------------ggggcagagcagggattctgattctgggtgtgcagggttctagagcccCAACCACTCGGCAGTTGTGCCACTTTGCCT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120859584 179 + 123690457 ttaaatggtgatacagcctgttgactcaggtgc----tatgattgtccctgtgtttacagatgacctgttat--atgatgtgtctagttagcaca-ctgctctagtga----------------------ggggcagagcagggattctgattctgggtgtgcaggattctagagccccaaccactcggcagttgcgccactttgcct
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           31577 180 +    111706 ttaaacggtgagacagcctgttgactcaggtgc----tatgcttgtccctgtgtttacagatgacctgttac--ataatgtgtgtaattaacatacctgctctagtga----------------------ggggcagcgcagaggttttgattctgggtgtgcaggatgctagagccTCAAACACTCGGCAGTTGTGCAACTTTGCct
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     67008 180 + 192460366 ttaaacggtgagacagcctgttgactcaggtgc----tatgcttgtccctgtgtttacagatgacctgttac--ataatgtgtgtaattaacatacctgctctagtga----------------------ggggcagcgcagaggttttgattctgggtatgcaggatgctagagccTCAAACACTCGGCAGTTGTGCAACTTTGCCT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     64190 180 - 187378091 TTAAACGGTGAGACAGCCTGTTGACTCAGGTGC----TATGCTTGTCCCTGTGTTTACAGATGACCTGTTAC--ATAATGTGTGTAATTAACATACCTGCTCTAGTGA----------------------GGGGCAGCGCAGAGATTTTGATTCTGGGTGTGCAGGATGCTAGAGCCTCAAACACTCGGCAGTTGTGCAACTTTGCCT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   415605 177 -  91754291 ttaaacggtgagacagcctgttgactcaggtgc----tgtgcttgtccctgtgtttacagatgacctgttac-----atgtgtgtaattaacatgcctgctctagtga----------------------ggagcagcgcagagattttgattctgggtgtgcaggattctagagccTCAAACACTCGGCAGTTGTGCAACTTTGCCT
i chlSab2.chr15                C 0 C 0
s mm10.chr16                    65429501 182 -  98207768 ttaaatcttaatacaacctactgacc--ggtactacttactatcgtccacttttatataca-aagTTGATATAAATAACTTGTTTAATTATTGCTCCTGCTCTAGAGA----------------------GAGGCAGGGTAGAGTTTCAGGTTCC-TGTGTATAGGAGTCTAGAGGTCCTGCCATTCACCAATCTGGCTACTTtgctt
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29067368 201 +  31377067 ttaaaccttgacacaacccgttgacacaggtat----tatgggtatttctac-tttacagatgagacatcaa--atagtttgtctaattattgcacctgttctagggaatgattattgcacctgttctagggaatgttctagaggattagaacccgggtatgtatgactctggagcctcagcgcttcagctattgtgctacTTGGCGT
i canFam3.chr33                C 0 C 0
e calJac3.chr17                   931714 2038 -  74750902 I
e panTro4.chr3_GL389630_random     85947 840 +    103936 I

a score=218618.000000
s hg38.chr3_KI270935v1_alt        122507 82 +    197351 GTGACTGAGGTATGG--------CATGGCAGCCAAGAAGAGGGAGCCGCCCGTTCCCTCTGGGAAGTCAGGGAAGACTCCCGGGAGGTGA
s ponAbe2.chr3                 199779985 82 + 202140232 GTGACTGAGGTATGG--------CATggcagccaagaagagggagccgccccttccctctgggaagtcagggaagactccctggaggtga
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120859763 82 + 123690457 GTGACTGAGGTATGG--------CATggcagccaagaagagggagctgccagttccctcttggaagtcagggaagactccctggaggtga
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           31757 82 +    111706 gtgattggggtatgg--------catggaagccaagagcagggagcacccagttccctctgggaagtcagggaagtctccctggaggTGA
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     67188 82 + 192460366 GTGATTGGGGTATGG--------CatggaagccaagagcagggagcacccagttccctctgggaagtcagggaagactccctggaggTGA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     64370 82 - 187378091 GTGATTGGGGTATGG--------CATGGAAGCCAAGAGCAGGGAGCACCCAGTTCCCTCTGGGAAGTCAGGGAAGACTCCCTGGAGGTGA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   415782 82 -  91754291 GTGATTGGGGTATGG--------CatggaagccaagaacagggagcacccagttccctctgggaagtcagggaagactgcctggaggTGA
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   933752 78 -  74750902 gtgactgaggtgtgg--------catgGGAGCCAAGAC---GCAGCCCTCA-TTCCCTCTGGGAAGTCAGGGAAGACTCCCTGGAGGTGA
i calJac3.chr17                I 2038 I 1866
s mm10.chr16                    65429683 71 -  98207768 --aatggggatatagac-gaggtcatggtatc-------agaggggtccctgtgccctttggggaatcaggga---------ggaggtga
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29067569 90 +  31377067 GTGGTTGAGGGatggacaggggcctacggggccaagaggaaggagctgctggttccctctgggaagtcgaggagggcttcctggaggTGA
i canFam3.chr33                C 0 C 0
e panTro4.chr3_GL389630_random     85947 840 +    103936 I

a score=422214.000000
s hg38.chr3_KI270935v1_alt        122589 226 +    197351 ---AATGTCCTTTAGTTT--CTTTCAGATCATAACC------------------AAGATGCTTAGAGGTCTCGGCTGGGGTGACTTGG-CACCCTGGCCTCTGCTTATGATGAGTC-----GAGGTTTCT--------------------GTCTTGGGCCTTCCTCACTTCCTAATGCCCTGCACCTCCCAT----GGGGCAAGAGGCTCC-GGCCTCCTCTGGCAGTTGAATCCAGATGGATGACA-AGATGAAGGCC--GCACAGCGATGGTTCCGCCCTG
s ponAbe2.chr3                 199780067 225 + 202140232 ---aatgtcctttagct---CTTTCAGATCATAACC------------------AAGATGCTTAGAGGTCTCGGCTGGGGTGACTTGG-CACCCTGGCCTCTGCTTATGATGAGTT-----GAGGTTTCT--------------------GTCCCGGGCCTTCCTCACTTCCTAATGCCCTGCACCTCCCAT----GGGGCAAGAGGCTCC-GGCCTCCTCTGGCAGTTGAATCCAGATGGATGACA-AGACGAAGACC--GCACAGTGATGGTTCCGCCCTC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120859845 226 + 123690457 ---aatgtcctttAGTTT--CTTTCAGATCATAACC------------------AGGAAGCTTAGAGGTCTCAGCTGGGGTGACTTGG-CATCCTGGCCTCTGCTTATGATGAGTC-----GAGGTTTCT--------------------GTCCTGGGCCTTCCTCACTTCCTAATGCCCTGCACCTCCCAT----GGGGCAAGAGGCTCC-GGCCTCCTCTGGCAGTTGAATCCAGAGAGATGACA-AGACGAAGGCC--ACACAGTGATGGTCCTGCCCTC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           31839 226 +    111706 ---AACGTCCTTTGGTTT--CTTCCAGGTCATACCC------------------GAGATGCTTAGAGGTCTCGGCTGGGGTGACTTGG-CACCCTGGCCTCTGCTTGTGGTGAGCT-----GAGGTTTCT--------------------GTCCCCGGCCTTCCTCACTTCCTAATGCCCTGCACCTCCCAT----GGGGCAACAGGCTCC-GGCCTTCTCTGGCAATTGAATCCAGATGGATGACA-AGATGAAGGCC--GCACAGGGATGGTTCCGCCCTC
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     67270 226 + 192460366 ---AACGTCCTTTGGTTT--CTTCCAGGTCATACCC------------------GAGATGCTTAGAGGTCTCGGCTGGGGTGACTTGG-CACCCTGGCCTCTGCTTGTGGTGAGCT-----GAGGTTTCT--------------------GTCCCCGGCCTTCCTCACTTCCTAATGCCCTGCACCTCCCAT----GGGGCAACAGGCTCC-GGCCTTCTCTGGCAATTGAATCCAGATGGATGACA-AGATGAAGGCC--GCACAGGGATGGTTCCGCCCTC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     64452 226 - 187378091 ---AACGTCCTTTGGTTT--CTTCCAGGTCATACCC------------------GAGATGCTTAGAGGTCGCGGCTGGGGTGACTTGG-CACCCTGGCCTCtgcttgtggtgagct-----gaggttTCT--------------------GTCCCCGGCCTTCCTCACTTCCTAATGCCCTGCACCTCCCGT----GGGGCAAGAGGCTCC-GGCCTCCTCTGGCAATTGAATCCAGATGGATGACA-AGATGAAGGCC--GCACAGGGATGGTTCCGCCCTC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   415864 224 -  91754291 ---AACGTCCTTTCGTTT--CTTCCAGATCATACCC------------------GAGATGCTTAGAGGTCTCGGATGGGGTGACTTGG-CACCCTGGCCTCTGCTTATGGTGAGTT-----GAGGTTTCT--------------------GTCCCCCGCCTTCCTCACTTCCTAATGCCCTGCACCTCCCAT----GGGGCAAGAGGCTCC-GGCCTC--CTGGCAATTGAATCCAGATGGATGACA-AGATGAAGGCC--GCACAGGGATGGTTCCGCCCTC
i chlSab2.chr15                C 0 C 0
s mm10.chr16                    65429754 239 -  98207768 ---------------ctt--ctgCCATATAGCAGCCAGAGAGTGCGAATCATGAGGAGTACCCAGAGGGACAGACTGGAGTGACGTGC-CACCCGAGATTCTTCTCAGGGCAAGCT-----GGTGATTCTAACACATTCTGTGGTCTCTAATCCTGAAGCTTCCTGGCATCCTAGGCCCTTGAACGACCCCT-----GGGCAAGAGGCTCC---CCCTCTTTGGGAAATTAAGGTAGCTGAAGGAT----GTGTAAGC----TACTGCAAGGTCCCTG-----
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29067659 257 +  31377067 AATACCTTCCTGGGGTTGAAATACCATATGACACCC---AAGTGCAAGTCTCTAGGGACACTCAGGAGG-GAGGCTGGGGTGACTCGGCCACCCTACACCCGAGTTATTCCAGTCCCCTGGGGGGTCACT--------------------GTCCTGGG-CTTCCTGCCTTCCCCAT-CCTTCCGCCGGCCCTCCTGGGGGCAGGAGGCTCTGGGCCTCCTCTGGCAGTCAAGTCTCGATGGGTGGCAGATGTGGAGCCCGGGAGCAGGGCTGGCCCCTGCTTG
i canFam3.chr33                C 0 C 0
e calJac3.chr17                   933830 1866 -  74750902 I
e panTro4.chr3_GL389630_random     85947 840 +    103936 I

a score=592068.000000
s hg38.chr3_KI270935v1_alt        122815 204 +    197351 GCCTGAACCCGCCAAGCGCCCCCTCCCACCCAGAGCGCGGCCTGCAGCACTGACCGAGGCGTTGACTTCTGCCATGGAGGCATTTTCCTCTTCACTGAGCAAGAGCTGGATGACTCTTAAGGGAAGTTCTGGAGATGGGAGAAGCAAATGTATCAT-----------------------------------------CACCCCACGGTTTACCCAGACTTACCCAAAAAGTCTGTCGGGC-CAGCC
s ponAbe2.chr3                 199780292 203 + 202140232 GCCTGAACCCGCCAAGCGCCCCCTCCCACCCAGAGCTCGGCCTGCAGCACTGACCGAGGCGTTGACCTCTGCCATGGAGGCATTTTCCTCTCCACTGAGCAGGAGCTGGATGACTCTTAAGGGAAGTTCTGGAGATGGGAGAAGCAAATGTATCAT-----------------------------------------CACCCCACGGTTTACCCAGACTTACCC-AAAAGTCTGTCGGGC-CAGCC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120860071 204 + 123690457 GCCTGAACCCGCCAAGCATCCCCTCCCACCCAGAGCATGGCCTGCAGCACTGACCAAGGCGTTGAGCTCTGCCATGGAGGCATTTTCCTCTTCACTGAGCAAGAGCTGGATGACTCTTAAGGGAAGTTCTGGAGATGGGAGAAGCAAATGTGTCAT-----------------------------------------CACCCCACGGTTTACCCAGACTTACCCAAAAAGTCTGTCGGGC-CAGCC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           32065 204 +    111706 GCCTGAACCCGCCAAGCGTCCCCTCCCACCCGGAGCGCGGCCTGCAGCACTGACCGAGGCGTTGACCTCTGCCATGGAGGCATTTTCCTCTTCACTGAGCAAGAGCTGGATGACTCTTAAGGGAGGTTCTGGAGATGGGAGAAGCAAATGTATCAT-----------------------------------------CACCCCACGGTTTACCCAGACTTACCCAAGAAGTCCGTCGGGC-CAGCC
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     67496 204 + 192460366 GCCTGAACCCGCCAAGCGTCCCCTCCCACCCGGAGCGTGGCCTGCAGCACTGACCGAGGCGTTGACCTCTGCCATGGAGGCATTTTCCTCTTCACTGAGCAAGAGCTGGATGACTCTTAAGGGAGGTTCTGGAGATGGGAAAAGCAAATGTATCAT-----------------------------------------CACCCCACGGTTTACCCAGACTTACCCAAGAAGTCCGTCGGGC-CAGCC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     64678 204 - 187378091 GCCTGAACCCGCCAAGCGTCCCCTCCCACCCGGAGCGCGGCCCGCAGCACTGACCGAGGCGTTGACCTCTGCCATGGAGGCATTTTCCTCTTCACTGAGCAAGAGCTGGATGACTCTTAAGGGAGGTTCTGGAGATGGGAGAAGCAAATGTATCAT-----------------------------------------CACCCCACGGTTTACCCAGACTTACCCAAGAAGTCCGTCGGGC-CAGCC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   416088 204 -  91754291 GCCTGAACCCGCCAAGCGTCCCCTCCCACCCGGAGCGCGGCCTGCAGCACTGACCGAGGCGTTGACCTCTGCCATGGAGGCATTTTCCTCTTCACTGAGCAAGAGCTGGATGACTCTTAAGGGAGGTTCTAGAGATGGGAGAAGCAAATGTATCAT-----------------------------------------CACCCCACGGTTTACCCAGACTTACCCAAGAAGTCCGTGGGGC-CAGCC
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   935696 243 -  74750902 GCCTGAACC--CCAAGCTCTCCTTCCCGCCCAGAGTGCAGCCTGCAGCACTGACCGAGGCGTTGATGTCTGCCATGGAGGCATTTTCCTCTTCGCTGAGCAAGAGCTGGATGACTCTTAAGGGAGGTTCTGGAGATGGGAGAAGGAAATTCATCATCACCCCATGGTTTACACAGATGGGAGAAGGAAATTCATCAGCACCCCATGGTTTACCCATACTTACCCAAGAAGTTTGTTGGGT-CGGCC
i calJac3.chr17                I 1866 C 0
s mm10.chr16                    65429993 191 -  98207768 -GGAGACCCTTTCAAGATCCACTTCCCACTGGGAGCC-------CAGCACTGACCGAGGCGTTGACGTCAGCGGCGGAGGCATTTTCATCCTCCCTGAGAGAGAGCACGATGGTCCTTAAGGGAAGCTCTGGAGAT----AAAGAAGACCCATCTC-----------------------------------------AGACCCAGAGGGTTCCCAGACTTATCCA--ACTTCTATCCTGTGCGGCT
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29067916 181 +  31377067 -CCC---CCTGCCAGGC-CGCCTCCCCACCCTG---CTGGCCTGCAGCACCGACCGAGGCGTTGACATCGGCCACGGAGGCATTTTCTTCTTCACTGAGCCAGAGCTGGATGAGCCTCACCGGAAGCCCTGGAAACGGGAGACG-----------------------------------------------------CAGGCCACGGTCACCCCCGGC---CCCGGGGAGGTGGCTGGGC-CTGTC
i canFam3.chr33                C 0 I 113
e panTro4.chr3_GL389630_random     85947 840 +    103936 I

a score=27252.000000
s hg38.chr3_KI270935v1_alt        123019 14 +    197351 CAAGTTGACTGCTC
s ponAbe2.chr3                 199780495 13 + 202140232 CAGGCCGA-TGCTC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120860275 14 + 123690457 CAGGCCGACTGCTC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           32269 14 +    111706 CAGGGCAACGGCTC
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     67700 14 + 192460366 CAGGGCAACGGCTC
i macFas5.chr2                 C 0 I 7
s papAnu2.chr2                     64882 14 - 187378091 CAGGGCGACGGCTC
i papAnu2.chr2                 C 0 I 7
s chlSab2.chr15                   416292 14 -  91754291 CAGGGCGACGGCTC
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   935939 14 -  74750902 CAGGGAGACTACTC
i calJac3.chr17                C 0 I 7
s mm10.chr16                    65430184 14 -  98207768 CAGAGAGACAGCTC
i mm10.chr16                   C 0 C 0
e canFam3.chr33                 29068097 113 +  31377067 I
e panTro4.chr3_GL389630_random     85947 840 +    103936 I

a score=6485.000000
s hg38.chr3_KI270935v1_alt        123033 5 +    197351 CATTC
s ponAbe2.chr3                 199780508 5 + 202140232 CATTC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120860289 5 + 123690457 CATTC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           32283 5 +    111706 CATTC
i rheMac3.chrUn_JH291127       C 0 I 2
s chlSab2.chr15                   416306 5 -  91754291 CATTC
i chlSab2.chr15                C 0 I 2
s mm10.chr16                    65430198 5 -  98207768 CATCC
i mm10.chr16                   C 0 I 1
e canFam3.chr33                 29068097 113 +  31377067 I
e calJac3.chr17                   935953 7 -  74750902 I
e macFas5.chr2                     67714 7 + 192460366 I
e papAnu2.chr2                     64896 7 - 187378091 I
e panTro4.chr3_GL389630_random     85947 840 +    103936 I

a score=42768.000000
s hg38.chr3_KI270935v1_alt        123038 22 +    197351 CAGTGACA-GAAGGTCACTGAAG
s ponAbe2.chr3                 199780513 23 + 202140232 CCCTTTTACGAAGGTCACTGAAG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120860294 22 + 123690457 CAGTGACA-GAAGGTCACTGAAG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           32290 19 +    111706 CAGTGACA----GGTCACTGAAG
i rheMac3.chrUn_JH291127       I 2 C 0
s macFas5.chr2                     67721 19 + 192460366 CAGTGACA----GGTCACTGAAG
i macFas5.chr2                 I 7 C 0
s papAnu2.chr2                     64903 19 - 187378091 CAGTGACA----GGTCACTGAAG
i papAnu2.chr2                 I 7 C 0
s chlSab2.chr15                   416313 19 -  91754291 CAGTGACA----GGTCACTGAAG
i chlSab2.chr15                I 2 C 0
s calJac3.chr17                   935960 22 -  74750902 CAGTGACA-GAAGGTCACTGAAG
i calJac3.chr17                I 7 C 0
s mm10.chr16                    65430204 20 -  98207768 CCATGGCA---AGGTCACTGAAA
i mm10.chr16                   I 1 I 221
e canFam3.chr33                 29068097 113 +  31377067 I
e panTro4.chr3_GL389630_random     85947 840 +    103936 I

a score=47326.000000
s hg38.chr3_KI270935v1_alt        123060 24 +    197351 AAACCGGGAGAAGTGGCCCTCACC
s ponAbe2.chr3                 199780536 24 + 202140232 AAACCGGGAGAAGTGGCCCTCACC
i ponAbe2.chr3                 C 0 M 1691
s nomLeu3.chr11                120860316 24 + 123690457 AAACCGGGAGAAGTGGCCCTCACC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           32309 23 +    111706 ACACC-GGAGAAGTGGCCCTCACC
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     67740 23 + 192460366 ACACC-GGAGAAGTGGCCCTCACC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     64922 23 - 187378091 ACACC-GGAGAAGTGGCCCTCACC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   416332 23 -  91754291 ACACC-GGAGAAGTGGCCCTCACC
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   935982 24 -  74750902 AAATCAGTACAAGTGACCCTCACC
i calJac3.chr17                C 0 T 56
e mm10.chr16                    65430224 221 -  98207768 I
e canFam3.chr33                 29068097 113 +  31377067 I
e panTro4.chr3_GL389630_random     85947 840 +    103936 I

a score=7849.000000
s hg38.chr3_KI270935v1_alt        123084 15 +    197351 CTA-----CATTCCACAGTG
s nomLeu3.chr11                120860340 15 + 123690457 CTA-----CATTCCACAGTG
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     67763 20 + 192460366 CTAGCGCTCACTCCACTATG
i macFas5.chr2                 C 0 T 69
s papAnu2.chr2                     64945 20 - 187378091 CTAGCGCTCACTCCACTATG
i papAnu2.chr2                 C 0 T 69
s calJac3.chr17                   935950 15 -  74750902 CTC-----CATTCCACAGTG
i calJac3.chr17                T 56 C 0
e rheMac3.chrUn_JH291127           32332  0 +    111706 C
e mm10.chr16                    65430224 221 -  98207768 I
e canFam3.chr33                 29068097 113 +  31377067 I
e chlSab2.chr15                   416355  0 -  91754291 C
e ponAbe2.chr3                 199780560 1691 + 202140232 M
e panTro4.chr3_GL389630_random     85947 840 +    103936 I

a score=10752.000000
s hg38.chr3_KI270935v1_alt        123099 44 +    197351 ACAGAAGGTCGCTGAAGAAACCGGGAGAAGTGGCCCTCACCCTA
s nomLeu3.chr11                120860355 44 + 123690457 ACAGAAGGTCACTGAAGAAACCGGGAGAAGTGGCCCTCACCCTA
i nomLeu3.chr11                C 0 C 0
s calJac3.chr17                   935965 44 -  74750902 ACAGAAGGTCACTGAAGAAATCAGTACAAGTGACCCTCACCCTA
i calJac3.chr17                C 0 T 56
e rheMac3.chrUn_JH291127           32332  0 +    111706 C
e mm10.chr16                    65430224 221 -  98207768 I
e canFam3.chr33                 29068097 113 +  31377067 I
e chlSab2.chr15                   416355  0 -  91754291 C
e macFas5.chr2                     67783 69 + 192460366 T
e papAnu2.chr2                     64965 69 - 187378091 T
e ponAbe2.chr3                 199780560 1691 + 202140232 M
e panTro4.chr3_GL389630_random     85947 840 +    103936 I

a score=7067.000000
s hg38.chr3_KI270935v1_alt        123143 29 +    197351 CATTCCACAGTGACAGAAGGTCGCTGAGC
s nomLeu3.chr11                120860399 29 + 123690457 CATTCCACAGTGACAGAAGGTCGCTGACC
i nomLeu3.chr11                C 0 I 103
s calJac3.chr17                   935953 29 -  74750902 CATTCCACAGTGACAGAAGGTCACTGAAG
i calJac3.chr17                T 56 C 0
e rheMac3.chrUn_JH291127           32332  0 +    111706 C
e mm10.chr16                    65430224 221 -  98207768 I
e canFam3.chr33                 29068097 113 +  31377067 I
e chlSab2.chr15                   416355  0 -  91754291 C
e macFas5.chr2                     67783 69 + 192460366 T
e papAnu2.chr2                     64965 69 - 187378091 T
e ponAbe2.chr3                 199780560 1691 + 202140232 M
e panTro4.chr3_GL389630_random     85947 840 +    103936 I

a score=6139.000000
s hg38.chr3_KI270935v1_alt        123172 27 +    197351 AAACCGGGAGAAGTGGCCCTCACCCTA
s nomLeu3.chr11                120860531 27 + 123690457 AAACCGGGAGAAGTGGCCCTCACCCTA
i nomLeu3.chr11                I 103 C 0
s calJac3.chr17                   935982 27 -  74750902 AAATCAGTACAAGTGACCCTCACCCTA
i calJac3.chr17                C 0 T 56
e rheMac3.chrUn_JH291127           32332  0 +    111706 C
e mm10.chr16                    65430224 221 -  98207768 I
e canFam3.chr33                 29068097 113 +  31377067 I
e chlSab2.chr15                   416355  0 -  91754291 C
e macFas5.chr2                     67783 69 + 192460366 T
e papAnu2.chr2                     64965 69 - 187378091 T
e ponAbe2.chr3                 199780560 1691 + 202140232 M
e panTro4.chr3_GL389630_random     85947 840 +    103936 I

a score=15759.000000
s hg38.chr3_KI270935v1_alt        123199 23 +    197351 CATTCCACAGTGACAGAAGGTTG
s nomLeu3.chr11                120860558 23 + 123690457 CATTCCACAGTGACAGAAGGTCG
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     67714 20 + 192460366 CATTCCACAGTGAC---AGGTCA
i macFas5.chr2                 T 69 C 0
s papAnu2.chr2                     64896 20 - 187378091 CATTCCACAGTGAC---AGGTCA
i papAnu2.chr2                 T 69 C 0
s calJac3.chr17                   935953 23 -  74750902 CATTCCACAGTGACAGAAGGTCA
i calJac3.chr17                T 56 C 0
e rheMac3.chrUn_JH291127           32332  0 +    111706 C
e mm10.chr16                    65430224 221 -  98207768 I
e canFam3.chr33                 29068097 113 +  31377067 I
e chlSab2.chr15                   416355  0 -  91754291 C
e ponAbe2.chr3                 199780560 1691 + 202140232 M
e panTro4.chr3_GL389630_random     85947 840 +    103936 I

a score=18629.000000
s hg38.chr3_KI270935v1_alt        123222 30 +    197351 CTGAAGAAACCGGGAGAAGTGGCCCTCACG-
s nomLeu3.chr11                120860581 30 + 123690457 CTGAAGAAACCGGGAGAAGTGGCCCTCACC-
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     67734 29 + 192460366 CTGAAGACACC-GGAGAAGTGGCCCTCACC-
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     64916 29 - 187378091 CTGAAGACACC-GGAGAAGTGGCCCTCACC-
i papAnu2.chr2                 C 0 C 0
s calJac3.chr17                   935976 30 -  74750902 CTGAAGAAATCAGTACAAGTGACCCTCACC-
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65430445 29 -  98207768 cttaagagtttgaagcaaat--ctctctcca
i mm10.chr16                   I 221 C 0
e rheMac3.chrUn_JH291127           32332  0 +    111706 C
e canFam3.chr33                 29068097 113 +  31377067 I
e chlSab2.chr15                   416355  0 -  91754291 C
e ponAbe2.chr3                 199780560 1691 + 202140232 M
e panTro4.chr3_GL389630_random     85947 840 +    103936 I

a score=346720.000000
s hg38.chr3_KI270935v1_alt        123252 209 +    197351 CTAGGGCTCACTCCACTATGCTCCGGGCCTCCCCAGCGCTCATCTCACTGAGCCAGCTGTGAGGTC------------------------------------------------------------------------TCTGCCTCCGTCCTTCCTCCATAGGCCACACAGGCCCGTGGTCCTTGCCGTGACAGCTTGCCTCGCCAGCTCCCATAGCCCGCACCTTACACCATCCCAGAGAAATCTGGAGCTCTGTCCTGT-----------GACCCCAGA-----GCTTCCTCATC
s nomLeu3.chr11                120860611 209 + 123690457 CTAGCGCTCACTCCACTATGCTCCGGACCTCCCCGACGCTCATCTCACTGAGCCAGCTGTGAGGTC------------------------------------------------------------------------TCTGCCTCCGTCCTTCCTCCATAGGCCACACAGGCCCATGGTCCTTGCCATGACAGCTTTCCTCGCCAGCTCCCATAGCCTGCACCTTACACCGTCCCAGAGAAATCTGGAGCTCTGTCCTGT-----------GACCCCAGA-----GCTTCCTCATC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           32332 206 +    111706 CTAGCGCTCACTCCACTATGCCCCGGGCCT-CCGGCCGCTCATCTCACTGAGCCAGCTGTGAAGTC------------------------------------------------------------------------TCTGCCTCCGTCCTTCCTCCACAGGCCACACAGCCCCGTGGTCCTTGCTGTGACAGCTGCCCTCGCCAGCTCCTACAGCCCGCACCTTACACCATCCCAGAGAAATCCGGAG--CTGTCCTGT-----------GACCCCAGA-----GCTTCCCCATC
i rheMac3.chrUn_JH291127       C 0 I 425
s macFas5.chr2                     67763 206 + 192460366 CTAGCGCTCACTCCACTATGCCCCGGGCCT-CCGGCCGCTCATCTCACTGAGCCAGCTGTGAAGTC------------------------------------------------------------------------TCTGCCTCCGTCCTTCCTCCACAGGCCACACAGCCCCGTGGTCCTTGCTGTGACAGCTGCCCTCGCCAGCTCCTACAGCCCGCACCTTACACCATCCCAGAGAAATCCGGAG--CTGTCCTGT-----------GACCCCAGA-----GCTTCCCCATC
i macFas5.chr2                 C 0 I 16
s papAnu2.chr2                     64945 208 - 187378091 CTAGCGCTCACTCCACTATGCCCCGGGCCT-CCGGCCGCTCATCTCACGGAGCCAGCTGTGAGGTC------------------------------------------------------------------------TCTGCCTCCGTCCTTCCTCCACAGGCCACACAGCCCCGTGGTCCTTGCTGTGACAGCTGCCCTCCCCAGCTCCTACAGCCCGCACCTTACACCATCCCAGAGAAATCTGGAGCTCTGTCCTGT-----------GACCCCAGA-----GCTTCCCCATC
i papAnu2.chr2                 C 0 I 16
s chlSab2.chr15                   416355 206 -  91754291 CTAGCGCTCACTCCACTATGCCCCGGGCCT-CCGGCCGCTCATCTCACTGAGCCAGCTGTGAGGTC------------------------------------------------------------------------TCTGCCTCCGTCCTTTCTCCACAGGCCACACAGCCCCGTGGTCCTTGCTGTGACAGCTGCCCTGGCCAGCTCCTACAGCCCGCACCTTACACCATCCCAGAGAAATCCGGAG--CTGTCCTGT-----------GACCCCAGA-----GTTTCCCCATC
i chlSab2.chr15                C 0 I 16
s calJac3.chr17                   936006 207 -  74750902 CTAGTGCTCATTCAGTTGTGGTTAGGGCCTCCCTGACTGTCTTCTCCCTGAGCCAGCCATGAGGTC------------------------------------------------------------------------TCTGCCTCCACCCTTCCTCAGAAGGTC-CACAGGCCCACGGTCCTTGCCGTGACAGCTGCCCTCGCCAGCTCCCGCAGCCCACACCTTACCCCATCCCAGAGAAACCTGGAGCTCTGTGCTGT-----------G-TCCCAGA-----GCTTCCCCATC
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65430474 284 -  98207768 ctgaaatcccctc---tctgtgctggaact-tctacctccctatttcctgcctaagctaggaggccaacagcgtcttattgacacttgatgcttccacacgatgcacaagagattctctctacaCTGCCGAGGCTTCTTCTGCCTCCGTCTGTCCTCTGCAGATGACCAAGGCCGGTGGTTCACACTGGGAGAGCTCTCCTCATCATGTCCTCCAGCCCCAAACT--CACCACCTCAG-----TTCTGAT--CTGTGCCTTTGAGGAACTTGGACCTCAGACACTGGTTTTCCCATC
i mm10.chr16                   C 0 C 0
e canFam3.chr33                 29068097 113 +  31377067 I
e ponAbe2.chr3                 199780560 1691 + 202140232 M
e panTro4.chr3_GL389630_random     85947 840 +    103936 I

a score=23236.000000
s hg38.chr3_KI270935v1_alt        123461 23 +    197351 TTCCCCAAAGGTGGGCGGAGTGC
s nomLeu3.chr11                120860820 23 + 123690457 TTCTCCAAAGGTGGGCGGAGTGC
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     67985 23 + 192460366 TTCCCCAAAGGTGGGAGGAGTGT
i macFas5.chr2                 I 16 C 0
s papAnu2.chr2                     65169 23 - 187378091 TTCCCCAAaggtgggaggagtgt
i papAnu2.chr2                 I 16 C 0
s chlSab2.chr15                   416577 23 -  91754291 TTCCCCAAAGGTGGGAGGAGCGT
i chlSab2.chr15                I 16 I 294
s calJac3.chr17                   936213 15 -  74750902 ATCCCCAAAGGTGGG--------
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65430758 23 -  98207768 ATCCCCATATACGAGAGACGACT
i mm10.chr16                   C 0 C 0
e rheMac3.chrUn_JH291127           32538 425 +    111706 I
e canFam3.chr33                 29068097 113 +  31377067 I
e ponAbe2.chr3                 199780560 1691 + 202140232 M
e panTro4.chr3_GL389630_random     85947 840 +    103936 I

a score=-4685.000000
s hg38.chr3_KI270935v1_alt        123484  32 +    197351 GGGGGTGAGAGGGTGGGGCCCAGGAA------------------------------------------------------------------------------------------------GAGTGC-
s nomLeu3.chr11                120860843  32 + 123690457 GGAGGCAAGAGGGTGGGGCCCGGGAG------------------------------------------------------------------------------------------------GAGTGC-
i nomLeu3.chr11                C 0 I 9614
s macFas5.chr2                     68008 128 + 192460366 GGAGGTGAGAGGGCGGGGCCCGGGTGGGGCGCAGGGGTAAGAGGGCGGAGCCTGGGTGGGGTGCGGGGGTAAGAAGGTGGAGCCTGGCTGGGGTGCGAGGGTGAGAGGGCGGGGCCTGGGTAGAGTGT-
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     65192  32 - 187378091 ggaggtgagagggcggggcccgggtg------------------------------------------------------------------------------------------------gggcac-
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   416894  32 -  91754291 GGGGGTGAGAGGGCGGGGCCTGGGTG------------------------------------------------------------------------------------------------GAGTGT-
i chlSab2.chr15                I 294 C 0
s calJac3.chr17                   936228   8 -  74750902 ------AAGAGTGC-------------------------------------------------------------------------------------------------------------------
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65430781  18 -  98207768 ---------------GGGGCTGGCAG------------------------------------------------------------------------------------------------GAGCAGT
i mm10.chr16                   C 0 C 0
e rheMac3.chrUn_JH291127           32538 425 +    111706 I
e canFam3.chr33                 29068097 113 +  31377067 I
e ponAbe2.chr3                 199780560 1691 + 202140232 M
e panTro4.chr3_GL389630_random     85947 840 +    103936 I

a score=294.000000
s hg38.chr3_KI270935v1_alt        123516 1 +    197351 G
s nomLeu3.chr11                120870489 1 + 123690457 A
i nomLeu3.chr11                I 9614 C 0
s macFas5.chr2                     68136 1 + 192460366 G
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     65224 1 - 187378091 a
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   416926 1 -  91754291 G
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   936236 1 -  74750902 A
i calJac3.chr17                C 0 C 0
e rheMac3.chrUn_JH291127           32538 425 +    111706 I
e mm10.chr16                    65430799 0 -  98207768 C
e canFam3.chr33                 29068097 113 +  31377067 I
e ponAbe2.chr3                 199780560 1691 + 202140232 M
e panTro4.chr3_GL389630_random     85947 840 +    103936 I

a score=14387.000000
s hg38.chr3_KI270935v1_alt        123517 10 +    197351 GGGGTGAGAG-
s panTro4.chr3_GL389630_random     86787 10 +    103936 GGGGTGAGAG-
i panTro4.chr3_GL389630_random I 840 C 0
s nomLeu3.chr11                120870490 10 + 123690457 GGGGTGAGAG-
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     68137 10 + 192460366 GAGGTGAGAG-
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     65225 10 - 187378091 ggggtgagag-
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   416927 10 -  91754291 GGGGTGAGAG-
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   936237 11 -  74750902 ATGGTGAGGGT
i calJac3.chr17                C 0 C 0
e rheMac3.chrUn_JH291127           32538 425 +    111706 I
e mm10.chr16                    65430799  0 -  98207768 C
e canFam3.chr33                 29068097 113 +  31377067 I
e ponAbe2.chr3                 199780560 1691 + 202140232 M

a score=15416.000000
s hg38.chr3_KI270935v1_alt        123527 7 +    197351 GGCGGGG
s panTro4.chr3_GL389630_random     86797 7 +    103936 GGCGGGG
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120870500 7 + 123690457 GGCGGGG
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     68147 7 + 192460366 GGCGGGG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     65235 7 - 187378091 ggcggag
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   416937 7 -  91754291 GGCGGGG
i chlSab2.chr15                C 0 I 186
s calJac3.chr17                   936248 7 -  74750902 GGCAGGG
i calJac3.chr17                C 0 I 2
s canFam3.chr33                 29068210 7 +  31377067 GGCCAGG
i canFam3.chr33                I 113 C 0
e rheMac3.chrUn_JH291127           32538 425 +    111706 I
e mm10.chr16                    65430799 0 -  98207768 C
e ponAbe2.chr3                 199780560 1691 + 202140232 M

a score=-4520.000000
s hg38.chr3_KI270935v1_alt        123534 3 +    197351 TCT--
s panTro4.chr3_GL389630_random     86804 3 +    103936 TCT--
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120870507 3 + 123690457 TCT--
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     68154 1 + 192460366 --C--
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     65242 1 - 187378091 --c--
i papAnu2.chr2                 C 0 I 317
s calJac3.chr17                   936257 1 -  74750902 T----
i calJac3.chr17                I 2 C 0
s canFam3.chr33                 29068217 3 +  31377067 --CGG
i canFam3.chr33                C 0 C 0
e rheMac3.chrUn_JH291127           32538 425 +    111706 I
e mm10.chr16                    65430799 0 -  98207768 C
e chlSab2.chr15                   416944 186 -  91754291 I
e ponAbe2.chr3                 199780560 1691 + 202140232 M

a score=2499.000000
s hg38.chr3_KI270935v1_alt        123537 2 +    197351 CT
s panTro4.chr3_GL389630_random     86807 2 +    103936 CT
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120870510 2 + 123690457 CT
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     68155 2 + 192460366 CT
i macFas5.chr2                 C 0 I 22
s calJac3.chr17                   936258 2 -  74750902 CT
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65430799 1 -  98207768 -T
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29068220 2 +  31377067 CC
i canFam3.chr33                C 0 C 0
e rheMac3.chrUn_JH291127           32538 425 +    111706 I
e chlSab2.chr15                   416944 186 -  91754291 I
e papAnu2.chr2                     65243 317 - 187378091 I
e ponAbe2.chr3                 199780560 1691 + 202140232 M

a score=5912.000000
s hg38.chr3_KI270935v1_alt        123539 5 +    197351 GGCG-G
s panTro4.chr3_GL389630_random     86809 6 +    103936 GGCCCA
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120870512 5 + 123690457 GGCA-G
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           32963 5 +    111706 GGCG-G
i rheMac3.chrUn_JH291127       I 425 C 0
s macFas5.chr2                     68179 5 + 192460366 GGCG-G
i macFas5.chr2                 I 22 C 0
s chlSab2.chr15                   417130 5 -  91754291 GGCG-G
i chlSab2.chr15                I 186 C 0
s calJac3.chr17                   936260 5 -  74750902 GGTG-G
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65430800 5 -  98207768 AGCC-A
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29068222 5 +  31377067 GGTG-G
i canFam3.chr33                C 0 C 0
e papAnu2.chr2                     65243 317 - 187378091 I
e ponAbe2.chr3                 199780560 1691 + 202140232 M

a score=1329816.000000
s hg38.chr3_KI270935v1_alt        123544 500 +    197351 TACCTAGGTTGACAGTTGGACTGAAGTTGTTCCCAGCCAGGAAGCAGCGGCTGTCAGTGAAGGCT-GGGGGGCAGGTGCACATGGGCTGACAGCCCAGAGTCTGGGAGATGTAGCAGTGGCCTTGATTGTAGCAGTAATTCACAGGGCAGGACTGGTTCTGACACAGGAAAGAGCTCCCCAGAGCTGCAGAGTGAGTAGGGAGGTCAGCAGCAGC-GCGCA-GGGCAGCAGAGGG-----------------ACGGCC---CAGCCCGTGGAAACCCGCTCCGGGACA----GGCTTGCTTTC----CCC-----------------CAGTGTTCCACTTCGGGCCACTCGGAACCCCAAACCATCCTTCCCCC--CTTTTCCAGGCGTTTCTCTGCAGGGCAACCCCTTTCCCCGGCCAGACAGGTATTCTTCCACTTTTGTGGAGGGACTGGAGTGTTTCTCAGACCCTCTGCTTCAGAAAGGACCCCGAAGGCTGGCAGAGGAGGGGCCCCCAGCTGGCTTTCCTCACGCCCTCCCCTCTCACGTCC
s panTro4.chr3_GL389630_random     86815 499 +    103936 TACCTAGGTTGACAGT-GGACTGAAGTTGTTCCCAGCCAGGAAGCAGCGGCTGTCAGTGAAGGCCCGGGGGGCAGGTGCACGTGGGCTGACAGCCCAGAGTCTGGGAGATGTAGCAGTGGCCTTGATTGTAGCAGTAATTCACAGGGCAGGACTGGTTCCGAC-CAGGAAAGAGCTCCCCAGAGCTGCAGAGTGAGTAGGGAGGTCAGCAGCAGC-GCGCT-GGGCAGCAGAGGG-----------------ACAGCC---CAGCCCGTGGAAACCCGCTCCGGGACA----GGCTTGCTTTC----CCC-----------------CAGTGTTCCGCTTCGGGCCACTCGGAACCCCAAACCATCCTTCCCCC--CTTTTCCAGGAGTTTCTCTGCAGGGCAACCCCTTTCCCCGGCCAGACAGGTATTCTTCCACTTCTGTGGAGGGACTGGAGTGTTTCTCAGACCCTCTGCTTCAGAAAGGACCCCGAAGGCTGGCAGAGGAGGGGCCCCCAGCTGGCTTTCCTCATGCCCTCCTCTCTCACGTCC
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120870517 483 + 123690457 TACCTAGGTTGACAGTTGGACTGAAGTTGTTCCCAGCCAGGAAGCAGAGGCTGTCGGTGAAGGCC-GGGGGACAGATGCACGTGGGCTGGCAGCCCAGAGTCTGGGAGATGTAGCAGTGGCCTTGATTGTAGCAGTAATTCACAGGGCAGGACTGGTTCCGACACAGGAAAGAGCTCCCCAGAGCTGCAGAGTGAGTAGGGAGGT---CAGCAGC-GCGCT-GGGGAGCAGAGGG-----------------ACAGCC---CAGCCCGTGGAAACCCGCTCCGGGACA----GGCCTGCTTTC---------------------------TTTCCC--------CCACTCGGAACCCCAAACCATCCTTCCCTG--CTTTTCCAGGCGTTTCTCTGCAGGGCAACCCCTTTCCCTGGCCAGGCAGGTATTCTTCCACTTCTGTGGAGGGACTGGAGTGTGTCTCAGACCCTCTGCTTCAGAAAGGACCCCGAAGGCTGGCAGAGGAGGGGCCCCCAGCTGGCTTTCCTCACGCCCTCCCCTCTCACGTCC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           32968 505 +    111706 TACCTAGGTGGACAGTTGGACTGAAGTTGTTCCCAGCCAGGAAGCAGAGGCTATCGGTGAAGGCC-GGGGGGCAAGTGCACGTGGGCTGGCAGCCCAGAGTCTGGGAGATGTAGCAGCGGCCTTGATTGTAGCAGTAATTCACAGGGCAGGACTGGTTCCGACACAGGAGAGAGCTCCCCAGAGCTGCAGAGTGAGCAGGGAGGTCAGCAGCAGC-GCACTGGGGCAGCGGAGGG-----------------AGCGCC---CAGCCCGTGGAAACCCGCTCTGGGACA----GGCCTGCTTTCTTTCCCC-----------------CAGTGTTCTGCTGTGGGCCACTCAGAACCCCAAACCATCCTTCCCCC--CTTTTCCAGGCGTTTCTCTGCAAGGCAACCCCTTTCCTCGACCAGGCAGGTATTCTTCCACTTCTAGAGAGGGACTGGAGTGTTTCTCAGGCCTTCTGCTTCAGAAAGGACCCTGAAGGCTGGCAGAGGAGGGGCCCCCAGCCGGCTTTCCTCACGCCCTCGCCTCTCACTTCC
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     68184 505 + 192460366 TACCTAGGTGGACAGTTGGACTGAAGTTGTTCCCAGCCAGGAAGCAGAGGCTATCGGTGAAGGCC-GGGGGGCAGGTGCACGTGGGCTGGCAGCCCAGAGTCTGGGAGATGTAGCAGCGGCCTTGATTGTAGCAGTAATTCACAGGGCAGGACTGGTTCCGACACAGGAGAGAGCTCCCCAGAGCTGCAGAGTGAGCAGGGAGGTCAGCAGCAGC-GCACTGGGGCAGCGGAGGG-----------------AGAGCC---CAGCCCGTGGAAACCCGCTCTGGGACA----GGCCTGCTTTCTTTCCCC-----------------CAGTGTTCTGCTGTGGGCCACTCAGAACCCCAAACCATCCTTCCCCC--CTTTTCCAGGCGTTTCTCTGCAAGGCAACCCCTTTCCTCGACCAGGCAGGTATTCTTCCACTTCTAGAGAGGGACTGGAGTGTTTCTCAGGCCTTCTGCTTCAGAAAGGACCCTGAAGGCTGGCAGAGGAGGGGCCCCCAGCCGGCTTTCCTCACGCCCTCGCCTCTCACTTCC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     65560 505 - 187378091 tACCTAGGTGGACAGTTGGACTGAAGTTGTTCCcagccaggaagcagaggctatCGGTGAAGGCC-GGGGGGCAGGTGCACGTCGGCTGGCAGCCCAGAGTCTGGGAGATGTAGCAGCGGCCTTGATTGTAGCAGTAATTCACAGGGCAGGACTGGTTCCGACACAGGAGAGAGCTCCCCAGAGCTGCAGAGTGAGCAGGGAGGTCAGCAGCAGC-GCACTGGGGCAGCGGAGGG-----------------AGAGCC---CAGCCCGTGGAAACCCGCTCTGGGACA----GGCTTGCTTTCTTTCCCC-----------------CAGCGTTCTGCTGTGGGCCACTCAGAACCCCAAACCATCCTTCCCCC--CTTTTCCAGGCGTTTCTCTGCAAGGCAACCCCTTTCCTCGACCAGGCAGGTATTCTTCCACTTCTAGAGAGGGACTGGAGTGTTTCTCAGGCCTTCTGCTTCAGAAAGGACCCTGAAGGCTGGCAGAGGAGGGGCCCCCAGCCGGCTTTCCTCACGCCCTCGCCTCTCACTTCC
i papAnu2.chr2                 I 317 C 0
s chlSab2.chr15                   417135 505 -  91754291 TACCTAGGTGGACAGTTGGACTGAAGTTGTTCCCAGCCAGGAAGCAGAGGCTATCGGTGAAGGCC-GGGGGGCAGGTGCACGTGGGCTGGCAGCCCAGAGTCTGGGAGATGTAGCAGCGGCCTTGATTGTAGCAGTAATTCACAGGGCAGGACTGGTTCCGACACAGGAGAGAGCTCCCCAGAGCTGCAGAGTGAGCAGGGAGGTCAGCAGCAGC-GCACCGGGGCAGCGGAGGG-----------------AGAGCC---CAGCCCGTGGAAACCTGCTCCGGGACA----GGCCTGCTTTCTTTCCCC-----------------CAGTGTTCTGCTGTGGGCCACTCAGAACCCCAAACCATCCTTCCCCC--CTTTTCCAGGTGTTTCTCTGCAGGGCAACCCCTTTCCTCGGCCAGGCAGGTATTCTTCCACTTCTAGAGAGGGACTGGAGTGCTTCTCACACCTTCTGCTTCAGAAAGGACCCTGAATGCTGGCAGAGGAGGGGCCCCCAGCCGGCTTTCCTCACGCCCTCGCCTCTCACTTCC
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   936265 486 -  74750902 TACCTAGGCGGACAGTCGGAGTGAAGTTGTTTCCAGCCAGGAGGCAGCGGCTATCGGTGAAGGCT-GGGGGGCAGGTGCACGAGGGCCGGCAGCCCAGAGCCTCAGAGATATAGCAGTGGCCTTGATTGTAGCAGTAATTCACAGGGCAGGACTGGTTCCGACAGAGGGAAGAGCTGCCCAGAGCTGCAGAGGGAGCAGGGAGGTCAGCAGCAGCAGC----AGGCAGCAGAGGG-----------------AGAGCCCAGCAGCCGGTGGAAACCTGCTCTGGGACA----GGCCTGGTTTCTTTCCCG-----------------CAGTGTTCTGCTGTGGGCCAC----------------TCCTTCTCCC--CTTTTCCAGGCATT--TCTGCAGGGAAACCCCCTTCCTCAGCCAGGCAGGCATTCGTCCACTTCTGCAGCAGGAGTGGAGTGTTTCTCAGACCCTCTGCTTCAGAAAGGACCCGGAAGGCTGGCAGATGA-GGGTCCCCAGCCAGCTTTCCTCATACTCTCCCCTCTCACTTCC
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65430805 529 -  98207768 TACCCATAGAGATGGTGGGAGTGAAACTGTTCCCAGCCAGGAAGCAGCGGTTATCAGTGAAGGCA-GGGGGACAGGTGCAAGTGGGCTGGCAGCCTGGAGCCTCAGAGATGTCGCAATGGCCATTGTTATAGCAGTAATTCATGGGACAGGAACGGTTTGGGC------AGGAGTCCTCCAGAGCTGTAAAGGGAGAAGGGGAATCAGCCACGCC-GCGACGAGGCAGCTGATGGGCAATGAGCCGCCTGTTGGAGCC---TAACCCTAGGATATCT--TCTAGGATATCTTGTTTGGTTCTCCCTCCCCGACAATGCTTGCCCAATCTGTATTGTGCTC---ACTACTCTGAACCCCACACTGCCTTCCCCACATCTTCCCCAAGCATGTCTCTGTAAAGCAA-CCGTTCTGTCTGCCAGGTGAGTGGTTTTTCCCCTCTGCACAGGGCATGGCTTGCTGACCAGAGCATCCTCGCCAGAGAGGGACCCAGAAGCTGGTGGGAGA-AAGATGTCAGTCTGCTTCCTCC---CCTTCTCCCCTCACATCT
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29068227 440 +  31377067 TACCTGCAGGGGCGGCCGGAGTGAAGGGGTTCCCCGCCACCAGGCAGCGGCTGTCCGAGAAGGCG-GGGTGGCAGGTGCAGGCCGGCTGGCAGTCCCTCTCGGGGGACACGTGGCAGTGGCCCCGGTTGTAGCAGTAACTGGCGGGGCAGGACCGGTTCCCACAGTGCAGCCCGGGGGCCAGAGCTGCGGAGGGAGGAGG--------CAGGAG--GCA---GGGAGGCCCAGGA-----------------TC--CC---CAGCCCAGGGG---CCCCCCCAGGACG----CTCGGGCCCCCCAAGCCC-----------------TCTCGGCCTGCCT--AGCAGTCCCCGACCCCTGAAGTCTCCCCCTCC--CTTCTCCTGG---TCCCCTGCC---CGAAGCCTTTCCTCTGC---------------------------------------ATTTAGCAGACCTGCTGCAGCGGGAAGGGACCCCAAGGCC-GCGGAGTGGGGAGCCCCAGCCTGCTTGTCTCGCCCCCTCCTTCCTCCCGCCC
i canFam3.chr33                C 0 I 151
e ponAbe2.chr3                 199780560 1691 + 202140232 M

a score=1178122.000000
s hg38.chr3_KI270935v1_alt        124044 567 +    197351 ATCTCCTTTTCTGCCTTTATAAAAGCTGCGGTTCTACCCACTCTGGCCTCGGCTCTGAAGGCACAGTGATCTGTAGATTTTATTTGGGTGCCTTAGGGGGCTTGGTAAAGGCCTCGCTGTGATCTCCCTCATCA-GACTCTGGTGACTCAGAGCGGGAGGAACAGATGGCTGGG--AGGACTCAAAGGGAAAATCAGGCACCTTTGCTGCCGGATCCCCACGCCAGCCCCTCCAAACGTCCTGACTCGTGAGATGCAGAGATCCTGAGCCTCGTGTCTCTGAAGATCCCCAGGGATCCCGAGGACCCAGCTTGCCCGGTTCTCTGGCGGCTGCTGAAGTCTCCTCC-----CCAAACCATCTTCAGTCTTTCGCCCGGGGCTCCCCCCATCAATGCCTCAGGGATGCCC-AGCCCCGTCCCCTCCCCTATGCCTGTACAACCTCTTCTCCTTCAGCCCCACACCATCCACCACCCCCTTTCCAGGCCTGCCTAGATTTCCCATACCTGCCTAGATGATTTCCCACACCTGCCTAGATTTCCCACACCTG-------------CCTAGATTGAGCATTCTAAAGATCTGC
s panTro4.chr3_GL389630_random     87314 526 +    103936 ATCTCCTTTTCTGCCTTTATAAAAGCTGCGGTTCTACCCACTCTGGCCTCGGCTCTGAAGGCACAGTGATCTGTAGATTTTATTTGGGTGCCTTAGGGGGCTTGGTAAAGGCCTCGCTGTGATCTCCCTCATCA-GACTCTGGTGGCTCAGAGCGGGAGGAACAGATGGCTGGG--AGGACTCAAAGGGAAAATCAGGCACCTTTGCTGCCGGATCCCCACGCCAGCCCCTCCAAACGTCCTGACTCGTGAGATGCAGAGATCCTGAGCCTCGTGTCTCTGAAGATCCCCAGGGATCCCGAGGACCCAGCTTGCCCGGTTCCCTGGCGGCTGCTGAAGTCTCCTCC-----CCAAACCATCTTCAGTCTTTCGCCCCGGGCTTCCCCCATCAATGCCTCAGGGATGCCC-AGCCCCGTCCCCTCCCCTATGCCTGTACAACCTCTTCTCCTTCAGCCCCACACCATCCACCACCCCCTTTCCAGG-----------------------------------------CCTGCCTAGATTTCCCACACCTG-------------CCTAGATTGAGCATTCTAAAGATCTGC
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120871000 451 + 123690457 ATCTCCTTTTCTGCCTTTATAACAGCTGCGGTTCTACCCACTCTGGCCTCGGCTCTGAA--CGCAGTGATCTGTAGATTTTATTTGGGTGCCTTAGGGGGCTTGGTAAAGGCCTCGCTGTGATCTCCCTCATCA-GACTCTGGTGGCTCAGAGCGGGAGGAACAGATGGCTGGG--AAGACTCAAAGGGAAAATCAGGCACCTTTGCTGCCGGATCCCCA-----------------------------------------------------------------------------CCGAGGACCCAGCTTGCCCGGTTCCCTGG-AGCTGCTGAAGTCTCCTCCCCTGGCCAAACCATCTTCAGTCTTTTGCCCGGGGTTCCCCCCATCAATGCCTCAGGGATGCTC-AGCCCCGTCCCCTCCGCTATGCCTGTACAACCTCTTCTCCTTCAGCCCCACACCATCCACCACCCCCTTTCCAGG-----------------------------------------CCTGCCTAGATTTCCCATACCTG-------------CCTAGATTGAGCATTCTAAAGATTTGC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           33473 563 +    111706 GTCTCCTCTTCTGCGTTTATAAAATCTGTGGTTCTACCCACTCTGGCCTCGGCTCTGAAGGCACAGTGACCTCTAGATTTTATTTGGGTGCCTAAGGGGGCTTGGTAAAGGCCTTGCTGTGATCTCCCTCATCA-GACTCTGATGGCTCAGAGCGGGAGGAACAGGTGGCTGGG--AGGACTCAAAGGGAAAATCAGGCACCTTTGCTGCCGGATCCCCACGCCAGCCCCTCCAAACGTCCTGACTTGTGAGATGCAGAGATCCTGGGCCTCGTGTCTCTGAAGACCCCCAGGGAGCCCGAGGAGCCAGCTTGCCCGGTTCCCTGGCCGCTGCTGAAGTCTCCTCCCCTGGGCAGACCATCTTCAGTCTTTTGCCCAGGGTTTCCCCCATCAATGCCTCAGGGATGCTT-AGCCCCGTCCCCTCCCCTATGCCTGTACAACCTCTTCTCCTTCAGCACCACACCATCTGCCACCCCCTTTCCAGGCCTA-------------------CCTA---GATTTCCCGTACCTGCCTAGATTTCCCATACCTGCCTAGATTACCTACCTAGATTGTGCATTCTAAAGGCTTGC
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     68689 582 + 192460366 GTCTCCTCTTCTGCGTTTATAAAATCTGTGGTTCTACCCACTCTGGCCTCGGCTCTGAAGGCACAGTGACCTCTAGATTTTATTTGGGTGCCTAAGGGGGCTTGGTAAAGGCCTTGCTGTGATCTCCCTCATCA-GACTCTGATGGCTCAGAGCGGGAGGAACAGGTGGCTGGG--AGGACTCAAAGGGAAAATCAGGCACCTTTGCTGCCGGATCCCCACGCCAGCCCCTCCAAACGTCCTGACTTGTGAGATGCAGAGATCCTGGGCCTCGTGTCTCTGAAGACCCCCAGGGAGCCCGAGGAGCCAGCTTGCCCGGTTCCCTGGCCGCTGCTGAAGTCTCCTCCCCTGGGCAGACCATCTTCAGTCTTTTGCCCAGGGTTTCCCCCATCAATGCCTCAGGGATGCTT-AGCCCCGTCCCCTCCCCTATGCCTGTACAACCTCTTCTCCTTCAGCACCACACCATCTGCCACCCCCTTTCCAGGCCTACCTAGATTTCCCGTACCTGCCTA---GATTTCCCGTACCTGCCTAGATTTCCCATACCTGCCTAGATTACCTACCTAGATTGTGCATTCTAAAGGCTTGC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     66065 582 - 187378091 GTCTCCTCTTCTACGTTTATAAAATCTGTGGTTCTACCCACTCTGGCCTCGGCTCTGAAGGCACAGTGATCTCTAGATTTTATTTGGGTGCCTAAGGGGGCTTGGTAAAGGCCTTGCTGTGATCTCCCTCATCA-GACTCTGATGGCTCAGAGCGGGAGGAACAGATGGCTGGG--AGGACTCAAAGGGAAAATCAGGCACCTTTGCTGCCAGATCCCCACACCAGCCCCTCCAAACGTCCTGACTTGTGAGATGCAGAGATCCTGGGCCTCGTGTCTCTGAAGACCCCCAGGGAGCCCGAGGAGCCAGCTTGCCCGGTTCCCTGGCTGCTGCTGAAGTCTCCTCCCCTGGGCAGActattttcagtcttttgccCAGGGTTTCCCCCATCAATGCCTCAGGGATGCTT-agccccatcccctcccctaTGCCTGTACAACCTCTTCTCCTTCAGCACCACACCATCCACCACCCCCTTTCCAGGCCTACCTAGATTTCCCATACCTGCCTA---GATTTCCCATACCTGCCTAGATTTCCCATACCTGCCTAGATTACCTACCTAGATTGCACATTCTAAAGGCTTGC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   417640 563 -  91754291 GTCTCCTCTTCTGCATTTATAGAATCTGTGGTTCTACCCACTCTGGCCTCGGCTCTGAAGGCACAGTGATCTCTAGATTTTATTTGGGTGCCTAAGGGGGCTTGGTAAAGGCCTTGCTGTGATCTCCCTCATCA-GACTCTGGTGGCTCGGAGCGGGAGGAACAGGTGGCTGGG--AGGACTCAAAGGGAAAATCAGGCACCTTTGCTGCCGGATCCCCACGCCAGCCCCTCCAAACGTCCTGACTTGTGAGATGCAGAGATCCTGGGCCTCGTGTCTCTGAAGACCCCCAAGGTGCCCGAGGAGGCAGCTTGCCCAGTTCCCTGACCGCTGCTGAAGTCTCCTCCCCTGGGCAGACCATCTTCAGTCTTTTGCCCAGGGTGTCCCCCATCAATGCCTCAGGGATGCTC-AGCCCCGTCCCCTCCCCTATGCCTGTACAACCTCTTCTCCTTCAGCACCACACCCTCTGCCACCCCCTTTCCAGACCTG-------------------CCTA---GATTTCCCATACCTGCCTACATTTCCCATACCTGCCTAGATTACCTACCTAGATTGAGCATTCTAAAGGCTTGC
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   936751 509 -  74750902 ATCTCCTTTTCTGCCTTTATAGAAGCTGCAGTTCCACCCACTCTGGCCTTGGCTCTGAAGACACAGTGATCTCTAGATTTTATTTGGGTGCCTTAGGGGGCTTGGTAAAGGCCTCCCTGTGACCTCCCTCATC------------------AGCGGGAGGGACAGATGGCTGGG--AGGACTCAAAGGGAAAATGAGGCACCTTTACTGCTGGATCCCTGTGCCAGCACCCACAAATGTCCTGATTTGTGAGATGCAGAGA-CCTGGGCCCCGTGTCTCTGAAGACGCCTAGAGAGCCCGAGGACCCAGCTTTCCCGGTTCGCGGG---CCACTGAAGTCTCCTCTTTTCACCAGATCATCTTCGGTCTTTTGCCTGGGGTTTTCCCCATTAATGTCTCAGGGATGCTG-AGTGCTATCCCCTCCCCTGTGCCTGTACAACCTCTTTTCCTTCAGCCCCACACCACCTACCACCCCCTTTTCAAG-----------------------------------------CCTACCTACATTTCCCATACTGA-------------CCTAGACTGAGCATTCT-AAGGCTTGC
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65431334 444 -  98207768 GTCTCCT----------------------GGTCCCACCCA----------------GAAGGCGC--CAGTCTCCTGGTTGTGTTTGGCAGCCTTAGAGGATT--GGAAAGGTTGCACTGTCACCTCTGTCATGGTGACAACACTGGCTCAGAGGAAGAGGAGCAGACGCATAGGAAAGAACCCAAAGGAAAACTGAGGTTCCG--------AGGTCCCCATAGCAACACCTCCAGATTCTCCAACTTGTCAAAGGCAGAGCCCCTGAGCACCGTGTTTCTGAAGATGCCCAGGTA-CCTGAGAGCCTAGCTAGCCT-------------CTGATCAATTAGCCTTATC------------CATCAGTCTTT--CCCTATGTTTTCTCCAGCAGGGTCTTGAGGCTGCTCTGGTCCAGGCTCATCCTCGGCTTCTGCA-----TCCTCTCCTGCATCCCCACACTACCTCCCACCCCTTTCTAAGT-----------------------------------------CCTCC--------CCCATTACAGCTT----------CTTATCATGAG---GTAAAAGACACAT
i mm10.chr16                   C 0 C 0
e canFam3.chr33                 29068667 151 +  31377067 I
e ponAbe2.chr3                 199780560 1691 + 202140232 M

a score=466276.000000
s hg38.chr3_KI270935v1_alt        124611 162 +    197351 TGGAAAAAGGAGAGAAATGGTTTGCCTTTGGCTGTCTACACCCTTGAGCTATCAGCTGCTCCCAGAAGCGCCTGCTCCAGGCCCTGTTCCCGGCTCACCCGCACAGTGCCGCCCATCCCCAGTCAGGTTTGGAGGGCAGGCCTCGCAGCCCTTCCCAGGAAC
s panTro4.chr3_GL389630_random     87840 162 +    103936 TGGAAAAAGGAGAGAAATGGTTTGCCTTTGGCCGTCTACACCCTTGAGCTATCAGCTGCTCCCAGAAGCGCCTGCTCCAGGCCCTGTTCCCGGCTCACCCGCACAGTGCCGCCCATCCCCAGTCAGGTTTGGAGGGCAGGCCTCGCAGCCCTTCCCAGGAAC
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120871451 162 + 123690457 TGGAAAAAGGAGAGAAATGGTTTGCCTTTGGCTGTCTACACCCTTGAGCTGTCAGCTGCTCCCAGAAGTGCCTCCTCCAGGCCCTGTTCCCGGCTCACCGGCACAGTGCCGCCCATCCCCAGTCAGGTTTGGAGGGCAGGCCTCGCAGCCCTTCCCAGGAAC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           34036 162 +    111706 CGGAGAAGGGAGAGAAATAGTTTGCCTTTGGCTGTCCACACCCTTGAGCTGTGAGCTGCTCCCAGAAGTCCCTCCTCCAGGCCCTGTTCCCGGCTCACCAGCACAGTGCCGTCCATCCCCAGTCAGGTGTGGAGGGCAGGCCTCGCAGCCCTTCCCAGGAAT
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     69271 162 + 192460366 CGGAGAAGGGAGAGAAATAGTTTGCCTTTGGCTGTCCACACCCTTGAGCTGTGAGCTGCTCCCAGAAGTCCCTCCTCCAGGCCCTGTTCCCGGCTCACCAGCACAGTGCCGTCCATCCCCAGTCAGGTATGGAGGGCAGGCCTCGCAGCCCTTCCCAGGAAT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     66647 162 - 187378091 cggagaagggagagaaatggTTTGCCTTTGGCTGTCCACACCCTTGAGCTGTGAGCTGCTCCCAGAAGCCCCTCCTCCAGGCCCTGTTCCCGGCTCACCAGCACAGTGCCGTCCATCCCCAGTCAGGTGTGGAGGGCAGGCCTCGCAGCCCTTCCCAGGAAT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   418203 160 -  91754291 CGGAAAAGGGAGGGAAATGGTTTGCCTTTGG-TGTCTACAGCCTTGAGCTGTGAGCTGCTCCCAGAAGCCCCTCCTCCAGG-CCTGTTCCCGGCTCACCAGCGCAGTGCCGCCCATCCCCAGTCAGGTGTGGAGGGCAGGCCCCGCAGCCCTTCCCAGGAAT
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   937260 162 -  74750902 TGGAAAAGGGAGAGAAAGAGATTACCTGTGGCTGTCACCACACTTGAGCTACCACCTGTCCCCAGATGTCCCTCCTCCAGGCCCTGCTCCCAGCTCACCGGCACAGTGCCGCCCATCCCCGGTCAGGTCTGGAGGGCAGGCCTCGCAGCCCTTCCCAGGAAC
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65431778 140 -  98207768 TGCTAAAGACAGAAA-----------------CACCAGGACCCTTGACCAATCACCTGGACCT-----CCTCTTGCCAGGGCCCTGTCCCACACTCACCTGCACAATGACGTCCATCTCCAGTTGTGTTTGGAGGGCAGGCCTCACAGCCCTTCCCAGGAAT
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29068818 159 +  31377067 TGGAGAAGGGAGACAAA-GGTTGGTCCCAGGCC--CCAGGCCCTCCCGGTGTCAACTGTCCCCAGGCCGTGCTCCTGCCAGGGCAGGTCCCCGCTTACCTGCACAGTGACGCCCGTCGCCCGTCAGGTGCGGGGGGCAGGCCTCGCAGCCCCTCCCGGGGAC
i canFam3.chr33                I 151 C 0
e ponAbe2.chr3                 199780560 1691 + 202140232 M

a score=1342332.000000
s hg38.chr3_KI270935v1_alt        124773 406 +    197351 GCAGTGGACACTCGGGAAGCACGGCTCCTCACAGGCATCCTCGGAGCCCTCGCAGTAGCGGCCGAAGGTGCCCCCGTCACACTTGCAGCCAGCCACCTGGAGGAGGGTTGCCGATCAC-GGGCGGCCAGGAGACCAAACTGGGAAGGGCTTCTGGGTGTTTCTGA--CTGACCCCTTTGGCCTGAGAACCCGTGGAC----CCTGAGT-CATGTCTCAGCCCCACCAGCACCTGCTGAGCACCTTCTTGACCAGGCCGTGGGGCGGCAAGGCCCTGCCTAAAGCCACACGGTAGTCCTGCCCAGCTGGCCTCCCTGGGTCATTG-TTTACCCTGACCCCCTGCCTGGC-CCTGCACCAGGATCTCAGCCTCTTCCCTCTCACACTCTAGCTCTTTGCCTGAAATCCTTTCTAGAGT
s panTro4.chr3_GL389630_random     88002 406 +    103936 GCAGTGGACACTCGGGAAGCACGGCTCCTCACAGGCATCCTCGGAGCCCTCGCAGTAGCGGCCGAAGGTGCCCCCGTCACACTTGCAGCCAGCCACCTGGAGGAGGGTTGCCGATCAC-GGGCGGCCAGGAGACCAAACTGGGAAGGGCTTCTGGGTGTTTCTGA--CTGACCCCTTTGGCCTGAGAACCCGTGGAC----CCTGAGT-CATGTCTCAGCCCCACCAGCACCTGCTGAGCACCTTCTTGACCAGGCCGTGGGGCGGCAAGGCCCTGCCTAAAGCCACACGGTAGTCCTGCCCAGTTGGCCTCCCTGGGTCATTG-TTTACCCTGACCCCCTGCCTGGC-CCTGCACCCGGATCTCAGCCTCTTCCCTCTCACACTCTAGCTCTTTGCCTGAAATCCTTTCTAGAGT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199782261 406 + 202140232 GCAGTGGACTCTCGGGAAGCACTGCTCCTCACAGACATCCTATATGCACTGGCAGTATCGGCCGAAGGTGCCCCCGTCACACTTGCAGCCAGCCACCTGGAGGAGGGTTGCTGATCAC-GGGTGGCCAGGAGACCAAACTGGGAAGGGCTTGTGGGTGTTTATGA--CTGACCCCTTTGGCTTGAGAACCCGTGGAC----CCTGAGT-CATGTCTCAGCCCCACCAGCACCTGCTGAGCACATTCCTGAACAGGCCGTGGGGCAGCAAGGCCCCGCCTAGAGCCACACGGTAGTCCTGCCCAGTTGGCCTCCCTGGGTCATTG-TTTACCCTAACCACCTGCCTGGC-CCTGCACCAGGATCTCAGCCTCTTCCCTCTCACACTCTAGCTCTTTGCCTGAAATCCTTTCTAGAGT
i ponAbe2.chr3                 M 1691 C 0
s nomLeu3.chr11                120871613 409 + 123690457 GCAGCGGACACTCGGGAGGCACGGCTCCTCACAGGCATCCTCGGAGCGCTCGCAGTAGCGGCCGAAGGTGCCCCCGTCACACTTGCAGCCAGCCACCTGGAGGAGGGTTGCTGATCAC-GGGCGGCCAGGAGACCAAACTGAGAAAGGCTTCTGGGTGTTTCTGACTCTGACCCCTTTGGCCTGAGAACCCGTGGAC----CCTGATT-TGTGTCTCAGCCCCACCAGCACCTGCTGAGCACCTTCTTGACCAGGCCGTGGGGCTGCAAGGTCCTGCCTAAAGCCACACAGTAGTCCTTCCCAGTTGGCCTCCCTGGGTCATTGTTTTACCCTGACCCCCTGCCTGGC-CCTGCACCGGGATCTCAGCCTCTTCCCTCTCACACTCTAGCTCTTTGCCTGAAATCCTTTCTAGAGT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           34198 406 +    111706 GCAGCGGACACTCGGGAAGCACGGCTCCTCACAGGCGTCCTTGGAGTGCTCGCAGTAGCGGCCGAAGGTGCCCCCGTCACACTTGCAGCCGGCCATCTGGAGGAAGGTTGCTGATCAC-GGGCGGCCAGGAGACCAAACTGGTAAGGGCTTCTGGCTGTCTCTGA--CTGACCCCTTTGGCCTGGGAACCCGTGGACCCTGCCTGAGT-CATGTCTCAGCTCCACCAGCACCTGGTGAGTATCTTCTTGACCAGGCCCTGGGGCTGCAAGGC----CCTAAAGCCACACGGTAGTCCTGCCCATTTGGCCTCCCTGGTTCATTA-TTTACTCCGACTCCTTGCCTGGC-CCTGCACCAGGATCTCAGCCTCTTCCCTCTCACACTCTAGCTCTTTGCCTGAAATCCTTTCTAGAGT
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     69433 406 + 192460366 GCAGCGGACACTCGGGAAGCACGGCTCCTCACAGGCGTCCTTGGAGTGCTCGCAGTAGCGGCCGAAGGTGCCCCCGTCACACTTGCAGCCGGCCATCTGGAGGAAGGTTGCTGATCAC-GGGCGGCCAGGAGACCAAACTGGTAAGGGCTTCTGGCTGTCTCTGA--CTGACCCCTTTGGCCTGGGAACCCGTGGACCCTGCCTGAGT-CATGTCTCAGCTCCACCAGCACCTGGTGAGTATCTTCTTGACCAGGCCCTGGGGCTGCAAGGC----CCTAAAGCCACACGGTAGTCCTGCCCATTTGGCTTCCCTGGTTCATTA-TTTACTCCGACTCCTTGCCTGGC-CCTGCACCAGGATCTCAGCCTCTTCCCTCTCACACTCTAGCTCTTTGCCTGAAATCCTTTCTAGAGT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     66809 406 - 187378091 GCAGCGGACACTCGGGAAGCACGGCTCCTCACAGGCGTCCTTGGAGCGCTCGCAGTAGCGGCCGAAGGTGCCCCCGTCACACTTGCAGCCGGCCATCTGGAGGAAGGTTGCTGATCAC-GGGCGGCCAGGAGACCAAACTGGTAAGGGCTTCTGGCTGTCTCTGA--CTGACCCCTTTGGCCTGGGAACCCGTGGACCCTGCCTGAGT-CATGTCTCAGCTCCACCAGCACCTGGTGAGTATCTTCTTGACCAGGCCCTGGGGCTGCAAGGC----CCTAAAGCCACACGGTAGTCCTGCCCATTTGGCCTCCCTGGTTCATTA-TTTACCCCGACTCCTTGCCTGGC-CCTGCACCAGGATCTCAGCCTCTTCCCTCTCACACTCTCGCTCTTTGCCTGAAATCCTTTCTAGAGT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   418363 410 -  91754291 GCAGCGGACACTCGGGAAGCACGGCTCCTCACAGGCGTCCTTGGAGCGCTCGCAGTAGCGGCCGAAGGTGCCCGCATCACACTTGCAGCCGGCCATCTGGAGGAAGGTTGCTGATCAC-AGGCGGCCAGGAGACCAAACCGGTAGGGGCTTCTGGGTGTTTCTGA--CTGACCCCTTTGGCCTGAGAACCCGTGGACCCTGCCTGAGT-CATGTCTCAGCTCCACCAGCACCTGGTGAGTACCTTCTTGACCAGGCCCTGGGGCTGCGAGGCCCTGCCTAAAGCCACACGGTGCTCCTGCCCATTTGGCCTCCCTGGTTCATTA-TTTACCCTGACTCCCTGCCTGGC-CCTGCACCAGGATCTCAGCCTCTTCCCTCTCACACTCTAGCTCTTTGCCTGAAATCCTTTCTAGAGG
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   937422 405 -  74750902 GCAGCTGACATTTGGAAAGCATGGCTCCTCACAGGCGTCCGCAGAGCGCTCGCAGTAGTGGCCGAAGGTGCCCCTGTCACACTTGCAGCTAGCCACCTGGAGAAGGGTTGCTGATCACAGGGTAGCCAGGAAGCCAAAGTAGTAAGGGCTTCTGGGTGTTTCTGA--CGGATCCCTCTGGCTTGAGAACCCGGGGAC------CGAGT-CATGTCTTAGTTCCTCCAGCACCTACTGAGCACCGTCTTGACCGTGCCTGGGGGCTGCAAGGCCCTGTTTAAAGCCACACGGCAGTGCTGCCCATCCGGCCTCCCTGGGTCATTG-TTTATGCTGACCCCCTGACTGGT-CCTGCAACAGGAGCTCAGCCTCTTCCCTCTCGCACTCTAGCTCCTTGCCTAAAATCCTTTCTAGAGT
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65431918 320 -  98207768 GCAGTTCACGTTAGGGAAGCATGGCTCATCACACGGGTCCTTGGAGCGTTCACACAAGCGGCCAAAGGTGTCCCCATCACACTTGCAGCTGGTCACCTGAATGACAGCAG--GGCTGC-TGGTGTCCA------CAAGCTG--AAGACCACCTGCC-----------CTGACACTTCTGTCATGAGAAGCCCCG--C--------------TGTCTCAGTCCCTCCAGCACC-----------GTCCTGAACAGGCC--AAGACTGTGAGTACCTTCCCAAAGCTACAC--------------------------------------------AATCCCCCGCCTGGC-CCTGTAGCAGGCTCTCAGCTTCGCCTCTCTCAGAGCATACCTCCTTCTCTGGAATCCTTGGTAGAGC
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29068977 353 +  31377067 GCAGGCCACACCCGCGAAGCACGGCGCCTCGCACTGGTCCCTGGAGCGCTCGCAGTAGTGGCCAAAGGTGCTGGAGCCACACCTGCAGCGGGCCACCTGGA-ATGGGTGGCTGGTTACTGCGCAGCCGGGAGACCGACC----------------GTGTTTCTGCGCCCCCCACCCCGGGCCTGGGAACCCACAGAC----TCCGAGTCCCCGTCCCGATCCTGCCAGCACGTGCCGAGCGCCG----GAGCCCGCTGTGGTCCTGC---------TCCGA-----------------GCCCCCTGGGCCTCGCTGGACGGTTC-TCTCCCCGACCGCTCTGCCCGGTGCCAGCCCTGGGACCCCAGC-----------CGCACCACATCTCCTTGCCCGAACCCCTTCTTAGAGT
i canFam3.chr33                C 0 I 4

a score=34537.000000
s hg38.chr3_KI270935v1_alt        125179 10 +    197351 AAGATGGGGG
s panTro4.chr3_GL389630_random     88408 10 +    103936 AAGATGGGAT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199782667 10 + 202140232 AAGATGGGGG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120872022 10 + 123690457 AAGATGGGGG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           34604 10 +    111706 AAGACAGGGG
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     69839 10 + 192460366 AAGACGGGGG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     67215 10 - 187378091 AAGACGGGGG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   418773 10 -  91754291 AAGACGGGGG
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   937827 10 -  74750902 AAGACAGGGG
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65432238 10 -  98207768 AAGATAGGGG
i mm10.chr16                   C 0 I 468
e canFam3.chr33                 29069330  4 +  31377067 I

a score=128787.000000
s hg38.chr3_KI270935v1_alt        125189 68 +    197351 atgcatgaatgattgaa-gcatg----aatgaatg-aatgaatgtatccatgtatagatgtatgtatccatgta
s panTro4.chr3_GL389630_random     88418 48 +    103936 atgcatgaatgattgaa-gc--------atgaatg-aatgaatgtatccatgtatag----------------a
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199782677 68 + 202140232 ATGCATGAATGATTGAA-GCATT----Aatgaatg-aatgaatgtatccgtgtatatatgtatgtatccatgta
i ponAbe2.chr3                 C 0 I 327
s nomLeu3.chr11                120872032 50 + 123690457 atgcatgaatgattgaa-gcatt----aatgaatg-aatgaatgtatccatgtaca------------------
i nomLeu3.chr11                C 0 I 2
s rheMac3.chrUn_JH291127           34614 68 +    111706 ATGCGTGAATGATTGAA-GCATT----Aatgaatg-aatgaatgtatccatgtatctatgtatgtatccatgta
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     69849 68 + 192460366 ATGCGTGAATGATTGAA-GCATT----Aatgaatg-aatgaatgtatccatgtatctatgtatgtatccatgta
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     67225 68 - 187378091 ATGCGTGAATGATTGAa-gcatt----aatgaatg-aatgaatgtatccatgtatctatgtatgtatccatgtg
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   418783 72 -  91754291 atgcatgaatgattgaa-gcattaatgaatgaatg-aatgaatgtatccgtgtatgtatgtatgtatccatgca
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   937837 50 -  74750902 atgaatgaatgattgactgaatg----catgaatgaaATGAGTGTGTACGTGTA--------------------
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65432248 468 -  98207768 I
e canFam3.chr33                 29069330  4 +  31377067 I

a score=20348.000000
s hg38.chr3_KI270935v1_alt        125257 15 +    197351 tgtatgtatccatgt
s panTro4.chr3_GL389630_random     88466 15 +    103936 tgtatgtatccatgt
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199783072 15 + 202140232 tgtatgtattcatgt
i ponAbe2.chr3                 I 327 C 0
s nomLeu3.chr11                120872084 15 + 123690457 tgtgtgtatccatgt
i nomLeu3.chr11                I 2 C 0
s rheMac3.chrUn_JH291127           34682 14 +    111706 tgtatatatgtat-c
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     69917 14 + 192460366 tgtatatatgtat-c
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     67293 14 - 187378091 tgtatatatgtat-c
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   418855  9 -  91754291 tgtgtgtat------
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   937887 15 -  74750902 TGTATGTATGCATGT
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65432248 468 -  98207768 I
e canFam3.chr33                 29069330  4 +  31377067 I

a score=82174.000000
s hg38.chr3_KI270935v1_alt        125272 72 +    197351 atgtatgtgtgtatccatgcatgtatgc----atgtatgtatccatgtgtgtatccatgtgtgtatgta-tca-----tgta
s panTro4.chr3_GL389630_random     88481 68 +    103936 atgtatgtgtgtatccatgcatgtatgc--------atgtatccatgtgtgtatccatgtgtgtatgta-tca-----tgta
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199783087 76 + 202140232 atgtatatgtgtatccatgtatgtatgtat-catgtatgtatccatgtatgtatccatgtgtgtatgtattca-----tgta
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120872099 40 + 123690457 atgcatgtgtgtatctatgcatgcatgt------------atccacgtatgt------------------------------
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           34696 80 +    111706 atgtgtgtatatatccatgcacgtatatatccacgtatgtatcaatgtatgta-tcatgtatgtatgta-tccatgtgtgta
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     69931 78 + 192460366 atgtgtgtatatatccatgcacgtatatatccacgtatgtatcaatgtatgta-tcatgtatgtatgta-tcc--gtgtgta
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     67307 76 - 187378091 acgtgtgtatatatccatgcatgtatgtatccacgtatgtatcaatgtatgta-tcatgtatgtatgta-tcc----atgca
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   418864 65 -  91754291 ---catgtatgtatccatgcatgtatgtaaccatgtatgt----atgtat----ccatgtatgtatgta-tca-----tgca
i chlSab2.chr15                C 0 I 4
e mm10.chr16                    65432248 468 -  98207768 I
e canFam3.chr33                 29069330  4 +  31377067 I
e calJac3.chr17                   937902  0 -  74750902 C

a score=135724.000000
s hg38.chr3_KI270935v1_alt        125344 133 +    197351 tgtatccatgtagatatgtatca---atgtatgtatccatgtatgtat---ccatgtatgtatgtgtgtgt-catgcatgtatgcatgtatccatgtatgtatccata--tgtgtgtatc-------------------catgtgtgtatgtatccatgtg
s panTro4.chr3_GL389630_random     88549 136 +    103936 tgtatccatgtagagatgtatca---atgtatgtatccatgtatgtat---ccatgtatgtatgtgtgtatccatgcacgtatgcatgtatccatgtatgtatccatatgtgtgtgtatc-------------------catgtgtgtatgtatccatgtg
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199783163 130 + 202140232 tgtatatgtgtatccatgtatcatgtatgtatgtat-catgtatgtat---ccatatgtgtatg--------tatccatgtatacatgtatccatgtgtgtatgtatccatgtatgtatc-------------------catatgtgtatgtatccatgtg
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120872139  91 + 123690457 --------------------------gtgtatgtatccgtgtatgtat---ccgtgtgtgtatg--------tatccatg--------------tgtatgtatccatatgtgtatgtatc-------------------catgtgtgtatgcatccatgtg
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           34776 153 +    111706 tgtatccatgcatgtatgtatcgt--atgcatgtatcaatgtatgtatgtatcatgtatgtatgcatgtatccatgtatgtatgtatgtatccatgtatgtatgaatgtatgtatatatccatgtatgtgtat------catgtatgtatgtatcaatgta
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     70009 149 + 192460366 tgtatccatgcatgtatgtatcgt--atgcatgtatcaatgtatgtatgtatcatgtatgtatgcatgtatcc----atgtatgtatgtatccatgtatgtatcaatgtatgtatatatccatgtatgtgtat------catgtatgtatgtatcaatata
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     67383 151 - 187378091 ggtatccatgcatgtacgtatcat--atgcatgtatcaatgtatgtat--------catgtatgtatgtatccatgtatgtatgtatgtatccatgtatgtatcaatgtatgtatatatccatgtatgtgtgtatcatgtatgtatgtatgtatcaatgta
i papAnu2.chr2                 C 0 C 0
e mm10.chr16                    65432248 468 -  98207768 I
e canFam3.chr33                 29069330   4 +  31377067 I
e calJac3.chr17                   937902   0 -  74750902 C
e chlSab2.chr15                   418929   4 -  91754291 I

a score=22913.000000
s hg38.chr3_KI270935v1_alt        125477 16 +    197351 tgt---atgtatccatgta
s panTro4.chr3_GL389630_random     88685 16 +    103936 tgt---atgtatccatgta
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199783293 16 + 202140232 tat---atgtatccatgta
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120872230 16 + 123690457 tgt---atgtatccatgta
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           34929 19 +    111706 tgtatcatgtatgtgtgta
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     70158 19 + 192460366 tgtatcatgtatgtgtgta
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     67534 19 - 187378091 tgtatcatgtatgtgtgta
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   418933 15 -  91754291 tgtatcatgta----tgta
i chlSab2.chr15                I 4 C 0
e mm10.chr16                    65432248 468 -  98207768 I
e canFam3.chr33                 29069330  4 +  31377067 I
e calJac3.chr17                   937902  0 -  74750902 C

a score=1866469.000000
s hg38.chr3_KI270935v1_alt        125493 670 +    197351 tgtCCTATTGCTTGAAAACTGGAttcc--------ttatttattttgagacagggtcccactcggttgcccaggctggagtgcaatgtcttgatcttggctcactgcaaactccacctcccaggttc--aagccatcctcccacct--cagcctccc------gaggagctggggctacaggcatgcaccaccacgcccactaatttttgtatttttcttctgcttttttttt-------taatgagac--agtctcgttctgtttcccacgctgcagtgcagtgtctcgatctcggctcactgcaatgtccccctcccaagttaaagcaattcttgtgcctcagcctcccaaatacttgagattacaggcatatgccaccacgcccagctaattttttgatttttagtagagacagggtcttgccatattgcccaggctggtctcaaagtcctgagctcaagcaatccgcctgcctcaggctcctaTGTGGCCTGCAAACTGGATTTCATATAAGCTGAAA--TTGACCTCCCTTGCTGACTCCCAAACCAAGAAGACAGAGCCTCCCTGCTGAGCACTGTGAGAAAACACAGCAGCCAGTACAGCAGCTCAGCAAAGGCTGCGGCGCCGAGACCTCACCAAGCTCCCTGCGCTCCCCTTTCTAACTCCC--TTACTGAAGCGACTCGGGGAATCTCCCT
s panTro4.chr3_GL389630_random     88701 669 +    103936 tgtCCTATTGCTTGAAAACTGGAttcc--------ttatttattttgagacagggtcccactcggttgcccaggctggagtgcaatgtcttgatcttggctcactgcaaactccacctcccaagttc--aagccatcctcccacct--cagcctccc------gaggagctggggctacaggcatgcaccaccacgcccACTAAtttttgtatttttcttctgcttttttttt-------ttatgagac--agtctcgttctgtttcccacgctgcagtgcagtgtctcgatctcggctcactgcaatgtccccctcccaagttaaagcaattcttgtgcctcagcctcccaaatacttgagattacaggcatatgccaccacgcccagctgattttttgatttttagtagagacagggtcttgccatattgcccaggctggtctcaaagtcctgagctcaagcaatccgcctgcctcaggctccTGTGTGGCCTGCAAACTGGATTTCATATAAGCTGAAA--TTGACCTCCCTTGCTGACTCCCAAACCAAGAAGACAGAGACTCCCTGCTGAGCACTGTGAGAAAACACAGCAGCCAGTACAGCAGCTCAGCAAAGGCTGCGGCGCCGAGACCTCACCAAGCTCCCTG-GCTCCCCTTTCTAACTCCC--TTACTGAAGCGACTCGGGGAATCTCCCT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199783309 677 + 202140232 tgtCCTATTGCTTGACAACTGGACTCC--------ttatttattttgagacagggtcccactctgttgcccagcctggagtgcaatgtcttgatcttggctcactgaaaacgccacctcccaggttc--aagccatcctcccacct--cagcctcct------gaggagctgggactacaggcgtgcactaccacgcccactcatttttgtatttttcttctgctttttttttttttttctaatgagac--agtctcgttctgtttcccaggctgcagtgcagtgtctcgatctcggctcattgcaatgtccccctcccaagttaaagcagttcttgtgcctcagcctccccaatagttgagattacaggcatatgccaccacacccagctaattttttgatttttagtagagacagggtcttgccatattgcccaggctggtctcaaacttctgagctcaagcaatccgcctgcctcaggctcctaTGTGGCCTGCAAACTGGATTTCATATAAGCTGAAA--TTGACCTCCCTTGCTGACTCCCAAACCAAGAAGACAGAGCCTCCCTGCTGAGCACTGTGAGAAAACGCAGCAGCCAGAACAACAGCTTAGCAAAGGCTGCAGCTCCGAGACCTCACCAAGCTCCCTGCGCTCCCCTTTCTAACTCCC--TTACTGAAACGACTCAGGGAATCTCCCT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120872246 671 + 123690457 tgtTCTATTGCTTGAAAACTGGAttcc--------ttatttattttgagacagggtcccactgtgtcacccaggctggagtgcaatgtcttgatcttggctcactgcaaactccacctcccaggttc--aagccatcctcccacct--cagcttccc------aaggagctgggactacaggcatgcaccaccacgcccACTAAtttttgtatttttcttctgctttttttttt------taatgagac--aatctcattctgtttcccaggctgcagtgcagtgtctcgatctcggctcattgcaatgtcccccgcccaagttaaagcaattcttgtgcctcagcctcccaaatagttgagattacaggcatatgccaacacgcccagctaattttttgatttttagtagagacacggtcttgccatattgcccaggctgatctcaaagtcctgagctcaagcaatccgcctgcctcaggctccTGTGTGGCCTGCAAACTGGATTCCATAGAAGCTGAAA--TTGACCTCCCTTGTTGACTCCTAGACCAAGAACACAGAGCCTCCCTGCTGAGCACTGTGAGAAAACGCAGCAGCCAGAACAACAGCGCAGCAAAGGCTGCGGCGCCCAGGCCTCACCAAGCTCCCTGCACTTCCCTTTCTAACTCCC--TTACTGAATCGACTCAGGGAATCTCCCT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           34948 669 +    111706 tgtaCTATTGCTTGAAAACTGGAttcc----ttatttatttattttgagacagggtcgcactatgtcacccaggctggagtgcagtgtcttgatctcggctcactgcaaactccacctcccaggttc--aagccatcctcccacct--cagcctcct------gaggagctgggactataggcatgtactaccatgcccACTAAtttttgtatttttctttttctttttt----------ttatgagac--agtctcgttctgttttccaggctgcagtgtaatgtctcgatctcggctcactgcaatgtccccctcctgagttaaagcaattcttgtgcctcagcctcccaaatagctgggattacaggcatatgccaccatgcccagctaattttttgatttttattagagacagcgtcttcacatattgcccaggctggtctcgaagtcctgagcccaagcaatccacctgcctcaggcttctaTGTGGCCTGCAAACTGGATTTCATATAAGCTGACATTTTGACCTCCCTTGCTGACCCCCAAACCAAGAAGACGGAACCTCCCTGCTAAGTAC--TGAGAAAACACAGCAACCAGAACAACAGCCCAGCAAAGGCTGTGGCTCCAATATCTCCCCACGCTCCCTGCACTCCCCTTTCTAACTCCC--TTACTGAAGCAACTCGGGGCAGCTCC--
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     70177 669 + 192460366 tgtactatTGCTTGAAAACTGGATTCC----ttatttatttattttgagacagggtcgcactatgtcacccaggctggagtgcagtgtcttgatctcggctcactgcaaactccacctcccaggttc--aagccatcctcccacct--cagcctcct------gaggagctgggactataggcatgtactaccatgcccactaatttttgtatttttctttttctttttt----------ttatgagac--agtctcgttctgttttccaggctgcagtgtaatgtcttgatctcggctcactgcaatgtccccctcctgagttaaagcaattcttgtgcctcagcctcccaaatagctgggattacaggcatatgccaccatgcccagctaattttttgatttttattagagacagcgtcttcacatattgcccaggctggtctcgaagtcctgagctcaagcaatccacctgcctcaggctcctaTGTGGCCTGCAAACTGGATTTCATATAAGCTGACATTTTGACCTCCCTTGCTGACTCCCAAACCAAGAAGACGGAACCTCCCTGCTAAGTAC--TGAGAAAACACAGCAACCAGAACAACAGCCCAGCAAAGGCTGTGGCTCCAATATCTCCCCACGCTCCCTGCACTCCCCTTTCTAACTCCC--TTACTGAAGCAACTCGGGGCAGTTCC--
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     67553 669 - 187378091 tgtactatTGCTTGAAAACTggattcc----ttatttatttattttgagacagggtcacactctgtcacccaggctggagtgcagtgtcttgatctcggctcactgcaaactctacctcccaggttc--aagccatcctcccacct--cagcctcct------gaggagctgggactataggcatgtactaccatgcccactaatttttgtatttttctttttctttttt----------ttatgagac--agtctcgttctgttttccaggctgcagtgtaatgtctcgatctcggctcactgcaatgtccccctcctgagttaaagcaattcttgtgcctcagcctcccaaagagctggaattacaggcatatgccaccatgcccagctcatttttttatttttagtagagacagcgtcttcacatattgcccaggctggtctcaaagtcctgagctcaagcagtccacctgcctcaggctcctgtgtGACCTGCAAACTGGATTTCATAGAAGCTGACATTTTGACCTCCCTTGCTGACCCCCAAACCAAGAAGACAGAACCTCTCTGCTAAGTAC--TGAGAAAACACAGCAACCAGAACAACAGCCCAGCAAAGGCTGTGGCTCCAATATCTCCCCACGCTCCCTGCACTCCCCTTTCCAACTCCC--TTACTGAAGCAACTCGGGGCATCTCC--
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   418948 674 -  91754291 tgtTCTGTTGCTTGAAAGCTGGACTCCttatttatttatttattttgagacagggtcgtactccgtcgcccaggctggagtgcagtgttttgatctcagctcactgcaaactccacctcccaggttc--aagccatcctcccacct--cagcctcct------gaggagctgggactataggcttgtaccaccatgcccACCAGtttttgtatttttctttttc-ttttt----------ttatgagac--agtcttgttctgttttccaggctgcagtgcagtgtctcgatctcagctcactgcaatgtccccctcccgagttaaagcaattattgtacctcagcctcccaaatagctgggattacaggcatatgccaccacgcccagctaattttttgatttttagtagagacagcatcttgccatattgcccaggctggtctcgaagtcctgagctcaagcaatccacctgcctcaggctcctaTGTGGCCTGCAAACTGGATTTCATATAAGCTGACATTTTGACCTCCCTTGCTGACCCCCAAACCAAGAAGACAGAACCTCCCTGCTAAGTAC--TGAGAAAACGCAGCAACCAGAACAACAGCCCAGCAAAGGCTGTGGCTCCAATATCTCACCAAGCTCCCTGCCCTCCCCTTTCTAACTCCCTTTTACTGAAGCAGCTTGGGGCATCTCC--
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   937902 671 -  74750902 TCTACTATTGCTTGAAAACTGGATTCCTAAtttatttatttattttgagacagggtctcactctgtcacccaggttggagtgcagtgtcttgatctctgctcactgcaacctccgcct-ccaggctcaaaagctatcctcccgcctcccatcctcccactagggaggggccaggactacaggcatgctctattatgcccAC---tttttgtatttttctttt---ttttt----------ttatgagacagagtcgcattctgttgccc-cgctggagtgtagtgtttcaatatcggctcactgcaacgtccacctcccgagttaaagcaattcttgtgcctcagcctcccgaaaagctgggattacaggcacgtgccaccatgcccagctaattttttgatttttagtagacatggggtctggtcatattgcccaggctggtctcgaagtcctgagctcaagcaatctgcctgcctcagcctcccaTGTGGCCTGCAAACTGGATTTCATATAAGCTGAAGTTTTGACCTCCTTTGCTGACTCCCGAGCCAGGAAGACAGAGCCTCCCTGCTAAGCACCGTAAGAAAATGCAGCAACCAGAACAACAGCCCAGCAAAGGCCGTGG---------TTCACCAAGCTCCCAG-ACTCCCCTTTCTAACTCCC--TTACTGAAACGACTCAGGGAATCTCCCt
i calJac3.chr17                C 0 I 138
e mm10.chr16                    65432248 468 -  98207768 I
e canFam3.chr33                 29069330   4 +  31377067 I

a score=12231.000000
s hg38.chr3_KI270935v1_alt        126163 23 +    197351 AAAATGGAATCCTCTAACACTTG
s panTro4.chr3_GL389630_random     89370 23 +    103936 AAAATGGAATCCTCTAACACTTG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199783986 23 + 202140232 AAAATGGAATCCTCTAACACTTG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120872917 23 + 123690457 AAAATGGAACCTTCTAACACTTG
i nomLeu3.chr11                C 0 C 0
e rheMac3.chrUn_JH291127           35617  0 +    111706 C
e mm10.chr16                    65432248 468 -  98207768 I
e canFam3.chr33                 29069330  4 +  31377067 I
e calJac3.chr17                   938573 138 -  74750902 I
e chlSab2.chr15                   419622  0 -  91754291 C
e macFas5.chr2                     70846  0 + 192460366 C
e papAnu2.chr2                     68222  0 - 187378091 C

a score=1640147.000000
s hg38.chr3_KI270935v1_alt        126186 674 +    197351 CTACTCCCAAGAGTGGATATTTGGGGATCTGTGGAATAGTATATTGATTTCAA--TCTCTTTTTCCCATTGTGTATTTTAT-GCTTTTCTACCCCCTACCCCACCAACCGTCCCTACCTCTATCCCTTTCGAGTACCCATTCTCTGCTCATGCTTCAGAAGGA--tgtgtgtgtgtgtctgtgtg----------------------------tgcgt------------------------gtgc----------------atgcgtgtgtgtgtaagtggtgAAGGAGGTAGTTTTGTGTTGCCAGATAAACACTTTCCTTTCTGGCTCTTCCTTTACAACCAAAAATAAAAA------------TAAAAAAGCAGATAGGACAAGAGTCGTGGAATTAGGCCaag-tatcttggctagaa---acatggagaagtagtttctccaaactggaaaagatgtttcttttagctggaaggagatagtaaaagag-aaagcaaaggggcttggaggtgtcaagata--gagggacccgcagctctcttcccagcaccgtgatgatgacatcctagggagaaatgactgtggggtgcttctaggcagacaggactgtaagcggcctcagaaaaggtgtcctgtgtctgagcaaggcacagaagcagcagagcctctccctgggtctgaaggggaagtggggcggag-ctgtgatggaaacctgtgtggactcacgcccaggga-cccacaaccaccttccaccccacacc
s panTro4.chr3_GL389630_random     89393 675 +    103936 CTACTCCCAAGAGTGGATATTTGGGGATCTATGGAATAGTATATTGATTTCAA--TCTCTTTTTCCCATTGTGTATTTTAT-CCGTTTCTACCCCCTACCCCACCAACCATCCCTACCTCTATCCCTTTCAAGTACCCATTCTCTGCTCATGCTTCAGAAGGAtgtgtgtgtgtgtgtctgtgtg----------------------------tgcgt------------------------gtgc----------------atgcatgtgtgtgtAAGTGGTGAAGGAGGTAGTTTTGTGTTGCCAGATAAACACTTTCCTTTCTGGCTCTTCCTTTACAACCAAAAATAAAAA------------TAAAAAAGCAGATAGGGCAAGAGTCGTGGAATTAGGCCaag-tatcttggctagaa---acatggagaagtagtttctccaaactggaaaagatgtttcttttagctggaaggagatagtaaaagag-aaagcaaaggggcttggaggtgtcaagata--gaggcacccgcagctcttttcccagcaccgtgatgatgacatcctagggagaaatggctgt-gggtgcttctaggcagacgggactgtaagcggcctcagaaaaggtgtcctgtgtctgagcaaggcacagaagcagcagagcctctccctgggtctgaaggggaagtggggcggag-ctgtgatggaaacctgtgtggactcacgcccaggga-cccacgaccaccttccaccccacacc
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199784009 699 + 202140232 CTACTCCCAAGAGTGGATATTTGGGGATCTATGGAATAGTATATTGATTTCAATCTCTCTTTTTCCCATTGTGTATTTTAT-CCTTTTCTACCCCCTACCCCACCAACCATCCCTACCTCTATCCCTTTCAAGTACCCATTCTCTGCTCATGCTTCAGAAGGA--tgtgtgtgtgtgtctgtgtg----------------------------tgcgtgtgtgtgtgtgtgtctgcgtgtgcgtgt----------------gtgtgtgtgtgtgtAAGTGGTGAAGGAGGTAGTTTTGTTTTGCCAGATAAACACTTTCCTTTCTGGCTCTTCCTTTACAACCAAAAATAAAAA------------TAAAAAAGCAGATAGGACAAGAGTTGTGGAATTAGGCCaag-tatcttggctagaa---acatggagaagtagtttctccaaactggaaaagatgtttcttttagctggaaggagatagtaaaagag-aaagcaaaggggcttggaggtgtcaagata--gagggacccacagctctcttcccagcaccgtgatgatggcgtcctagggagaaatggctgtggggtgcttctaggcagacgggactgtaagcggcctcagaaaaggtgtcctgtgtttgagcaaggcacagaagcagcagtgcctctccctgggtctgaaggggAAGTGGGGCGGAG-CTGTGATGGAAA-CTGTGTGGACCCAGGCCCAGGGA-CCCACGACCACCTTCCACCTCTCACC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120872940 677 + 123690457 CTACTCCCAAGAGTGCATATTTGGGGATCTATGGAATAGTATATTGATTTCAATCTCTCTTTTTCCCATTGTGTATTTTAT-CCTTTTCTACCCCCTACCCCACCAACCATCCCTACCTCTATCCCTTTCAAGTACCCATTCTCTGCTCATGTTTCAGAAGGA--tgtgtgtctgtgtgtgtgtg----------------------------tgtctgtgt--------------------gtgt----------------gtgtgtgtgtgtgtAAGTGGTGAGGGAGGTAGTTTTGTGTTGCCAGATAAACACTTTCctttctggctcttcttttacaaccaaaaataaaaa------------taaaaaagcagataggacaagagttgtggaattaggccaag-tatcttggctagaa---acatgcagaagtaatttctccaaactggaaaagatgtttcttttagctggaaggagatagtaaaggag-aaagcaaaggggcttggaggtgtcaagata--gagggacccacagctctctccccagcaccg---tgatggcatcccagggagaaacggctgtggggtgcttctaggcagacgggactgtaagcggcctcagaaaaggtgtcctttgtctgagcaaggcacagaagcagcagagcctctccctgggtctg-aggggaagtggggcagag-ctgtgatggaaacctgtgtggactcaggcccagggaccccatgaccaccttccgccccacacc
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           35617 652 +    111706 --------------------------------AGAATAGTAGATTGATTTTAATCTGTCTTTTTCCCATTGTGTATTTTAT-CCTTTTCTACCCCCCACCCCACCAACCATCACTACCTCTATCCCTTTCAAGTCCCCATTCTCTGCTCATGCTTCAGAAGGA--tgtgtatgtgtatgtgtctg----------------------------tgtgcgtgtgcatgtgtgt----------gtgc------------------gtgtgtgtgtgtAAAGGGTGAAGGAGGTGGTTTTGTGTTGCCAGATAAACA-----CTTTCTGGCTCTTCCTTTACAACCAAAAATAAAAA------------CTAAAAAGCAGATAGGACAAGAGTCGTGGAATTAGGCCaag-tatcttggctagaa---acatggagaagtaatttctccaaactgaaaaagatgtttcttttagccagagggagagagtaaaagag-aaagcaaaggggcttggaggtgtcaagata--gagcgaccagcagctctcttcccagcaccgtgatgatgacatcctagggagaaatggctgtggggtgcttctaggcagacaggaccataagcggcctcgtaaaaggtgtcctatgtctgagcaaggcacagaagcagcagagcctctccctgggtctgaaggggaagtggggcagag-ctgggatggaaacctgtgtggactcatgcccagggaccccatgaccaccttccaccccacacc
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     70846 652 + 192460366 --------------------------------AGAATAGTAGATT--TTTTAATCTGTCTTTTTCCCATTGTGTATTTTAT-CCTTTTCTACCCCCCACCTCACCAACCATCACTACCTCTATCCCTTTCAAGTCCCCATTCTCTGCTCATGCTTCAGAAGGA--tgtgtatgtgtatgtgtctg----------------------------tgtgtgtgtgcatgtgtgt----------gtgc----------------atgtgtgtgtgtgtAAAGGGTGAAGGAGGTGGTTTTGTGTTGCCAGATAAACA-----ctttctggctcttcctttacaaccaaaaataaaaa------------ttaaaaagcacataggacaagagttgtggaattaggccaaa-tatcttggctagaa---acatggagaagtaatttctccaaactggaaaagatgtttcttttagccagagggagagagtaaaagag-aaagcaaaggggcttggaggtgtcaagata--gagcgaccagcagctctcttcccagcaccgtgatgatgacatcctagggagaaatggctgtggggtgcttctaggcagacaggaccgtaagtggcctcgtaaaaggtgtcctatgtctgagcaaggcacagaagcagcagagcctctccctgggtctgaaggggaagtggggcagag-ctgggatggaaacctgtgtggactcatgcccagggaccccatgaccaccttccaccccacacc
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     68222 654 - 187378091 --------------------------------AGAATAGTAGATTGATTTTCATCtgtctttttcccattgtgtattttat-ccttttctaccccccaccccaccaaccATCACTACCTCTATCCCTTTCAAGTCCCCATTCTCTGCTCATGCTTCAGAagga--tgtgtatgtgtatgtgtctg----------------------------tgtgtgtgtgcatgtgtgt----------gtgc----------------gtgtgtgtgtgtgtaaagggtGAAGGAGGTGGTTTTGTGTTGCCAGATAAACA-----CTTTCTGGCTCTTCCTttacaaccaaaaataaaaa------------ttaaaaagcagatagGACAAGAGTCGTGGAATTAGGCCAAG-TATCTTGGCTAGAA---ACATGGAGAAGTAATTTCTCCAAACTGAAAAAGATGTTTCTTTTAGCCAGAGGGAGAGagtaaaagag-aaagcaaaggggCTTGGAGGTGTCAAGATA--GAGCGACCAGCAGCTCTCTTCCCAGCACCGTAATGATGACATCCTAGGGAGAAATGGCTGTGGGGTGCTTCTAGGCAGACAGGACCATAAGCGGCCTCGTAAAAGGTGTCCTATGTCTAAGCAAGGCACAGAAGCTGCAGAGCCTCTCCCTGGGTCTGAAGGGGAagtggggcagag-ctgggatggaAACCTGTGTGGACTCATGCCCAGGGACCCCATGACCACCTTCCACCCCACACT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   419622 698 -  91754291 --------------------------------AGAATAGTAGATTGATCTTAATCTGTCTTTTTCCCATTGTGTATTTTAT-CCTTTTCTACCCCCCACCCCACCAACCATCACTACCTCTATCCCTTTCAAGTTCCCATTCTCTGCTCATGCTTCAGAAGGA--tgtgtatgtgtctgtgtgtgcacgtgtgtgcgtgtgcgtgtatgtgcatgtgtgtgtgcatgtgtgt----------gtgcgtgtgtgcgtgtgtgcgtgtgtgtgtgtgCAAGGGGTGAAGGAAGCAGTTTTGTGTTGCCCGATAAACA-----CTTTCTGGCTCTTCCTTTACAACCAAAAATAAAAA------------TTAAAAAGCAGATAGGACAAGAGTCGTGGAATTAGGCCaag-tatcttggctagaa---acatggagaagtaatttctccaaactgaaaaagatgtttcttttagccagagggagagagtaaaagag-aaagcaaaggggctcggaggtgtcaagata--gggccaccagcagctctcttcccagcaccgtgatgatgacatcctagggagaaatggctgtggggtgcttctaggcagacaggaccgtaagcggcctcgtaaaaggtgtcctgtgtctgagcaaggcacagaagcagcagagcctctccctgggtctgaagggaaagtggggcagag-ctgcgatgggaacctgtgtggactcatgcccagggaccccacgaccaccttccaccccacacc
i chlSab2.chr15                C 0 C 0
s canFam3.chr33                 29069334 651 +  31377067 CTACTTCCAGGACTGGACATCTGGGGACACCTAAACTAATACATTGATGCCAATCTCTGTTTTTCCTCGTCTGTGTCTTGTCCCCTCTCTGCCCCCGGGCTC---------CTCCACCTCTACCCCTTCCCGGTGGGAATGCTC-GATCGTGCTTCCCGAGAA-------------------------------------------------------------------------------GGGC------------------GCCTGTAGGTGTAAGGAGCGAGCGGGGCGGTGGGGTATCGCCAGCCAAACACTCCCCTTTATGGCTCCTGCTTTACAACCCAAACAAAACAAAACAAAGTTTTTAAAAAAGCAAATGGGGCAGGATGGATAGACTAAGGCCAAACTGTCGTGGTTAGAACCGGCATGCACCAAGATAGtctctaaaatg-aaaagatccttcttttagctggaaggagacagtagaagagaaaaacgaaggggtgtaggggcgtcaacatcataggggacctacacccctcttcccaacgccacaacgaggagagcccagagagaaataggcgtgtggtgcttgtaggcagacgcagcc-tagggcgccttataaaaggtgccccgtgtctgagcaaagcaccgaagccatggagcacctccctgggcctgaagaggagggagcacggcgcctgtgag------ctgtgtaggcacgtgcccagggaccacagga--ggcctccctcccccACC
i canFam3.chr33                I 4 I 85
e mm10.chr16                    65432248 468 -  98207768 I
e calJac3.chr17                   938573 138 -  74750902 I

a score=13748.000000
s hg38.chr3_KI270935v1_alt        126860 5 +    197351 gcagg
s panTro4.chr3_GL389630_random     90068 5 +    103936 gcagg
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199784708 5 + 202140232 GCAGG
i ponAbe2.chr3                 C 0 I 830
s nomLeu3.chr11                120873617 5 + 123690457 gcagg
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           36269 5 +    111706 gcagg
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     71498 5 + 192460366 gcagg
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     68876 5 - 187378091 GCAGG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   420320 5 -  91754291 gcagg
i chlSab2.chr15                C 0 C 0
e mm10.chr16                    65432248 468 -  98207768 I
e canFam3.chr33                 29069985 85 +  31377067 I
e calJac3.chr17                   938573 138 -  74750902 I

a score=154974.000000
s hg38.chr3_KI270935v1_alt        126865 83 +    197351 gccctctgctgggcttcgccgcagagctgtg---------------gggcgctgtgagaaagacggaggtggaagtttcctgccaacctggcagaagg
s panTro4.chr3_GL389630_random     90073 83 +    103936 gccctctgctgggcttcgccgcagagctgtg---------------gggcgctgtgagaaagacggaggtggaagtttcctgccaacctggcagaagg
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120873622 98 + 123690457 gccctctgctgggctttgccgcagagctgtggaactgggaaccactgggcactgtgagaaagactgaggtggaagtttcctgccaacctggcagaagg
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           36274 97 +    111706 gccctctgctgagctttgccacagagctgtggaactggaaaccattgggcactgtgagaaagactgaggtggaggcttcctgccaacctggcag-agg
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     71503 97 + 192460366 gccctctgctgagctttgccacagagctgtggaactggaaaccattgggcactgtgagaaagactgaggtggaggcttcctgccaacctggcag-agg
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     68881 97 - 187378091 GCCCTCTGCTGAGCTTTGCCACAGAGCTGTGGAACTGGAAACCATTGGGCACTGTGAGAAAGACTGAGGTGGAGGCTTCCTGCCAACCTGGCag-agg
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   420325 97 -  91754291 gccctctgctgagctttgccacagagctgtggaactgggaaccactgggcactgtgagaaagactgaggtggaggcttcctgccaacctggcag-agg
i chlSab2.chr15                C 0 C 0
e mm10.chr16                    65432248 468 -  98207768 I
e canFam3.chr33                 29069985 85 +  31377067 I
e calJac3.chr17                   938573 138 -  74750902 I
e ponAbe2.chr3                 199784713 830 + 202140232 I

a score=104956.000000
s hg38.chr3_KI270935v1_alt        126948 105 +    197351 ggaggtgggagataaaaatccagttgaact---------ataagcaataaagtaag----Gttctttc------------ctctttccttccttccttcctttttct----------------------------------------------ttctttcgtccttctttttctcc---
s panTro4.chr3_GL389630_random     90156 105 +    103936 ggaggtgggagataaaaatccagttgaact---------ataagcaataaagaaag----Gttctttc------------ctctttccttccttccttcctgtttct----------------------------------------------ttctttcgtccttctttttctcc---
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120873720  87 + 123690457 ggaggtgggagataaaaatccagttgaact---------ataagcaata----aag----Gttctttc------------ctctttccttccttccttctttcttc------------------------------------------------------------ctttttctcc---
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           36371 153 +    111706 ggaggtgggagagaaaagtccagttgaact---------ataagcgatc----aag----tttctttctttctctttcttttcttttctttctctcttcctttttc--tctctttctttcccttccttcccctttctttccttccttcc----ttctttcttctttctttttctcc---
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     71600 159 + 192460366 ggaggtgggagagaaaagtccggttgaact---------ataagcaatc----aag----tttctttctctttctttcttttcttttctttctctcttcctttttctttctctttctttcctttccttcccctttctttccttccttccttctttctttcttctttctttttctcc---
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     68978 159 - 187378091 ggaggtgggagagaaaaGTCCAGTTGAACT---------ATAAGCAatc----aagtttctttctttctctttctttcttttcttttctttctctcttcctttttctttctctttctttcccttccttcccctttctttccttccttcc----ttctttcttctttctttttctcc---
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   420422  98 -  91754291 ggaggggggagagaaaagtccggttgaact---------gtaagcaatc----aagtttctttctttctctttctttcttttcttttc-----------------------------------------------------------------ttttcttttctttctttctctct---
i chlSab2.chr15                C 0 I 14
s canFam3.chr33                 29070070 112 +  31377067 agggtcgtgagctggagcccccattgggcTTGCtgctcagtgaggagtctgttgag----attctttc-----------------cccctcctctgttcctccccct----------------------------------------------gcttgtgcacgcaccccctcGACACG
i canFam3.chr33                I 85 C 0
e mm10.chr16                    65432248 468 -  98207768 I
e calJac3.chr17                   938573 138 -  74750902 I
e ponAbe2.chr3                 199784713 830 + 202140232 I

a score=660.000000
s hg38.chr3_KI270935v1_alt        127053 14 +    197351 aata----------------------------------tagtttcttt
s panTro4.chr3_GL389630_random     90261 48 +    103936 aatattttctttctttctttctttctttctttctttctttctttcttt
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120873807 38 + 123690457 aata----------aagttagtttctttctttcattcattcattcttt
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           36524 14 +    111706 aata----------------------------------aagtttcttt
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     71759 14 + 192460366 aata----------------------------------aagtttcttt
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     69137 14 - 187378091 aata----------------------------------aagtttcttt
i papAnu2.chr2                 C 0 C 0
s canFam3.chr33                 29070182 14 +  31377067 CGTG----------------------------------CACCCTCTCT
i canFam3.chr33                C 0 C 0
e mm10.chr16                    65432248 468 -  98207768 I
e calJac3.chr17                   938573 138 -  74750902 I
e chlSab2.chr15                   420520 14 -  91754291 I
e ponAbe2.chr3                 199784713 830 + 202140232 I

a score=27434.000000
s hg38.chr3_KI270935v1_alt        127067 17 +    197351 ctttctttctttttc---tc
s panTro4.chr3_GL389630_random     90309 17 +    103936 ctttctttctttttc---tc
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120873845 17 + 123690457 ctttctctctttttc---tc
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           36538 20 +    111706 ctttctttctctttcttttc
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     71773 20 + 192460366 ctttctttctctttcttttc
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     69151 20 - 187378091 ctttctctttcttttccttc
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   420534 20 -  91754291 ctttgtttctctttcctttc
i chlSab2.chr15                I 14 C 0
s canFam3.chr33                 29070196 17 +  31377067 CCCTCTCTCTCTGTC---TC
i canFam3.chr33                C 0 I 107
e mm10.chr16                    65432248 468 -  98207768 I
e calJac3.chr17                   938573 138 -  74750902 I
e ponAbe2.chr3                 199784713 830 + 202140232 I

a score=508343.000000
s hg38.chr3_KI270935v1_alt        127084 323 +    197351 ctttcc------------------------ctttctttcctt--tcctttctttcct-ttcctttctttccctcctt------------ctttctttcttttct----------------tttcttttcttttctt---ttctttctttttgacatagagtctcactctgttgcccaggctggagtacaatggcgcaatcttggctcactgtaacctccacctcccgggtgcaagcgattttcctgccgcagcctcccgagtagctgggactacaggcgcctgccaccacgcccagctaatttttgtatttttagtagagatggggtttcaccatgttggtcaggatggtctcgatctcctgaccttgtgatccgcttgcc
s panTro4.chr3_GL389630_random     90326 332 +    103936 ctttcc------------------------ttttctttcctt--tcctttctttcct-ttcctttctttccctcctt------------ctttctttcttttcttttctt-------ttctttcttttcttttctt---ttctttctttttgagatagagtctcactctgttgcccaggctggagtacaatggcgcaatctcggctcactgtaacctccacctcccgggtgcaagcgattttcctgccgcagcctcccgagtagctgggactacagacacctgccaccacgcccggctaatttttgtatttttagtagagatggggttccaccatgttggtcaggatggtcttgatctcctgaccttgtgatccgcttgcc
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120873862 294 + 123690457 ctttcc------------------------tttacttttctt--tccttt-----------ccttttttcattcctt------------ctttctttc-----------------------------------ctt---ttctttctttttgagatggagtctcactctgttgcccaggctggagtgcagtggcgcaatcttggctcactgtaacctccgcctcccgggttcaagcgattctcctgcctcagcctcccgagtagctgggactacaggcacccgccaccacgcccagctaatattggtatttttagtagagacggggtttcaccatgttggtcaggatggtctcgatctcctgaccttgtgatccgccttcc
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           36558 355 +    111706 cttccttcccctttct--------------ttctctttccttccttccttccttctt-tctctttctttcttttctt-----------tctgtctctcctttcctttctttccttccttctttctttcctttcttttcattctttctctttgagatggagtctcactctgttgcccaggctggagtgcagtggcgcaatcttggctcactgtaacctctgcctctcgcgttcaagcgattctcctgcctcagcctcccaagtagctgggactacaggcgcccgccaccacacccggctgatttttgtatttttagtagagatggggttccaccatgttggtcaggatggtctcgatctcctgaccttgtgatccgcctgcc
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     71793 366 + 192460366 cttccttcctttctcttta-------tttcttttctttctttctttctctctctttt-tttctttctttcttttctt-------tctgtctgtctctcctttcctttctttccttccttctttctttcctttcttttcattctttctttttgagatggagtctcactctgttgcccaggctggagtgcagtggcgcaatcttggctcactgtaacctccgcctcccgcgttcaagcgattctcctgcctcagcctcccaagtagctgggacaacaggcgcccgccaccacacctggctgatttttgtatttttagtagagatggggttccaccatgttggtcaggctggtctcgatctcctgaccttgtgatccgtctgcc
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     69171 369 - 187378091 cttccttcccctttctttctctttctttctctttctttctttccttccttccttcct-tttctttctttcttttctt-----------tctgtctctcctttcctttctttccttccttctttctttcctttcttttcattctttctttttgagatggagtctcactctcttgcccaggctggagtgcagtggtgcaatcttggctcactgtaacctccgcctcccgcattcaagcgattctcctgcctcagcctcccaagtagctgggactacaggcgcccgccaccacacccagctgatttttgtatttttagtagagatggggttccaccatgttggtcaggatggtctcgatctcctgaccttgtgatccgcctgcc
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   420554 357 -  91754291 cttccc------------------------ctttctttccttccttctttctttcttctttctttctttctttctgtctgtctgtctgtctgtctctcttttcctttctttccttccttctttctttcctttcttttcattctttctttttgagatggagtctcactctgttgcccaggctggagtgcagtggcgcaatcttggctcactataacctccacctcccgggttcaagcgattctcctgcctcagcctcccaagtagctgggactacaggtgcccgccaccacgcccggctagtttttgtatttttagtagagatggggttccaccatgttggtcaggatggtcttgatctcctgaccttgtgatccgcctgcc
i chlSab2.chr15                C 0 C 0
e mm10.chr16                    65432248 468 -  98207768 I
e canFam3.chr33                 29070213 107 +  31377067 I
e calJac3.chr17                   938573 138 -  74750902 I
e ponAbe2.chr3                 199784713 830 + 202140232 I

a score=89329.000000
s hg38.chr3_KI270935v1_alt        127407 50 +    197351 tcagcctccaaaagt----gct--gagattaaag---gcgtgagccactgcacccggcc
s panTro4.chr3_GL389630_random     90658 50 +    103936 tcagcctccaaaagt----gct--gagattaaag---gtgtgagccactgcacccggcc
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120874156 50 + 123690457 tcagcctccaaaagt----gct--gagattaaag---gcgtgagccactgcaccaggcc
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           36913 50 +    111706 tcagcctccaaaagt----gct--gggattaaag---gcatgagcccctgcacccggcc
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     72159 50 + 192460366 tcagcctccaaaagt----gct--gggattaaag---gcgtgagccactgcacccggcc
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     69540 50 - 187378091 tcagcctccaaaagt----gct--gtgattaaag---gcatgagccactgcacccggcc
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   420911 50 -  91754291 tcagcctccaaaagt----gct--gtgattaaag---gcatgagccactgcacccagcc
i chlSab2.chr15                C 0 C 0
s canFam3.chr33                 29070320 57 +  31377067 tcagcctggcagagtgggagctaggggattaaaattcggttgagcgataagccgtga--
i canFam3.chr33                I 107 C 0
e mm10.chr16                    65432248 468 -  98207768 I
e calJac3.chr17                   938573 138 -  74750902 I
e ponAbe2.chr3                 199784713 830 + 202140232 I

a score=68319.000000
s hg38.chr3_KI270935v1_alt        127457 26 +    197351 AGAAAGTTCTCTTTCTTCC-CATGTGA
s panTro4.chr3_GL389630_random     90708 26 +    103936 AGAAAGTTCTCTTTCTTCC-CATGTGA
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120874206 26 + 123690457 AGAAAGTTCTCTTTCTTCC-CACATGA
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           36963 26 +    111706 AGAAAGTTCTCTTTCTTCC-CATGTGA
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     72209 26 + 192460366 agaaagttctctttCTTCC-CATGTGA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     69590 24 - 187378091 agaaagtTCTCTTTCTTCT---TGTGA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   420961 26 -  91754291 AGAAAGTTCTCTTTCTTCC-CATGTGA
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   938711 26 -  74750902 aaaaaGTTCTCTTTCTTCC-CAGGTGA
i calJac3.chr17                I 138 C 0
s canFam3.chr33                 29070377 27 +  31377067 agacagttctgtttcttacacatgtaa
i canFam3.chr33                C 0 C 0
e mm10.chr16                    65432248 468 -  98207768 I
e ponAbe2.chr3                 199784713 830 + 202140232 I

a score=183452.000000
s hg38.chr3_KI270935v1_alt        127483 92 +    197351 GTTTGTGGCCTGAGACTGGAATCTGCTCTACTCACCTACCACTGCTCCACCCATC------TCCCAACACAGACACACCCAGGACAGGCAGAATCACA
s panTro4.chr3_GL389630_random     90734 92 +    103936 GTTTGTGGCCTGAGACTGGAATCTGCTCTACTCACCTACCACTGCTCCACCCACC------TCCCAAGACAGACACACCCAGGACAGGCAGAATCACA
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120874232 92 + 123690457 GTTTATGGCCTGAGACTGGAGTCTTCTCTACTCACCTACCACTGCTCCACCCACC------TCCCAACACAGACACACCCAGGAGAGGCAGAATCACA
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           36989 73 +    111706 GTTTATGGCCTGAGACTGGAAT-------------------CTGCTCCACCCACC------TCCCAACACCAACACACCCAGCAGAGGCAGAATCACA
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     72235 73 + 192460366 GTTTATGGCCTGAGACTGGAAT-------------------CTGCTCCACCCACC------TCCCAACACCAACACACCCAGCAGAGGCAGAATCACA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     69614 73 - 187378091 GTTTATGGCCTGAGACTGGAAT-------------------Ctgctccacccacc------tcccaacaccaaCACACCCAGCAGAGGCAGAATCACA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   420987 73 -  91754291 GTTTATGGCCTGAGACTGGAAT-------------------CTGCTCCACCCACC------TCCCAACACAGACACACCCAGGAGAGGCAGAATCACA
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   938737 92 -  74750902 GTTTATGACCTAAGACTGGTATCCGCTCCACTCATCTACCATAGCTCCACCCACC------TCCCAACACAGACACGCCCAGGAGAGGCAGAAACACG
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65432716 91 -  98207768 GTTTGTAGCCCAAGA-TGGCCCCTGCGCCACTTACCCACCACAGCTCCACCCTCC------TCCCTAGATACACTTTCCCCGGGAGAAAACACACACA
i mm10.chr16                   I 468 I 2
s canFam3.chr33                 29070404 71 +  31377067 gttcatggcctgagattGAGGT----------------TGACTGTCCTCCCCTGCCTTGGTTCCCAACACATACAATTCCCACCGAG-----------
i canFam3.chr33                C 0 C 0
e ponAbe2.chr3                 199784713 830 + 202140232 I

a score=3266253.000000
s hg38.chr3_KI270935v1_alt        127575  994 +    197351 GCATCCATTCCACTCCCATTTCCTCTCCCCTCGGCACAGAAA----CTCCTCCCCCACCTCCCAACACTCACCTCCAGGGAGGAGTTGCCCACCCTGCTGGTCTGATTGTACAAACACTGGCTCTCTGCATTGCAATGGCAGACCACAGTCCTGGGCTGGAGTGCAGATGCCAAGCCAATCTTGGCACTTCTTGCTAGAATCTCCAGAGTGAATGGCTCCAGCGACTTGGGTGTCCACAGCAACGTCCCATTCTCTGCCCCGGGGAAGATGAGAATGTTGAGAGCTGGGAGAC------------------------TCCT--CGGCTCTGTGGTCTGATTGCTGATACGGGGCTtcccccacccctctcaggccaccct-ccccctccccAGACAAATCTCATTGGTCATTTCCTTTGAGCAAGGCTGGTAT-C--GGGGGTGATCCTGGTCACGCTCCCAGCTGGAAGGACGTGGCACCAGTCCAACATACTGATTGTAGCGGGGAACGCCACAGAGGGGAAAGCAGTTTCCTCC----TGAAGAAACCCCAAAGGGCAGCCCTGGCTGGGCTCACACCAGGATGGGACATCCTGG-GGGATGGAGGAT-------CAAGGCCAGGATCCTCCAGACACCTCCCCAGGCTGCGCTGCCGGCCAAACTGGCTTCACTCTCACGGCAGCCCCATCCTTTGCCCTGATTTCTCACCCACCC----CCCACTTCCTGGACCTTT-CCCAGACACCCCCTTCAGACACCAGACTGTAGTGAAACACTACTACATA-----------TCTTCAGATCAAA------CTGATATTTT-----TCAAGAAAATAGGAAAGTCTCCTTAAAACAGCAGATTGAAAGGAAGTGACAG---AGAATAGACGAACGTAATTTCCAGACCATCGTCCTTCAGGGGTGGGGCCCGTGGA-GAAGAAAACCTCTCAGTGCCATTGTCTCGCACCTGGGAGGACG-CACATGG-----------------------------------------GGCAAAAGGGATGCAGGCAAAGCAGTCCCTTCTGAGACACAGAGAGAAAGAACATCAGGCAGA-----GAGGCAAAGA------
s panTro4.chr3_GL389630_random     90826 1017 +    103936 GCATCCATTCCACTCCCATTTCCTCTCCCCTCGGCACAGAAA----CTCCTCCCCCGCCTCCCAACACTCACCTCCAGGGAGGAGTTGCCCACCCTGCTGGTCTGGTTGTACAAACACTGGCTCTCTGCATTGCAATGGCAGACCACAGTCCTGGGCTGGAGTGCAGATGCCAAGCCAATCTTGGCACTTCTTGCTAGAATCTCCAGAGTGAATGGCTCCAGCGACTTGGGTGTCCACAGCAACGTCCCATTCTCTGCCCCAGGGAAGATGAGAATGTTGAGAGCTGGGAGACTCCTCAGCTCTGTGGTCTGATGCATCCT--CAGCTCTGTGGTCTGATTGCTGATATGGGGCTTCCCCCACCCCTCTCAGGCCACCCT-CCCCCGCCCCAGACAAATCTCATTGGTCATTTCCTTTGTGCAAGGCTGGTAT-C---GGGGTGATCCTGGTCATGCTCCCAGCTGGAAGGAGGTGGCACCAGTCCAACATACTGATTGTAGCGGGGAACGCCACAGAGGGGAAAGCAGTTTCCTCC----TGAAGAAACCCCAAAGGGCAGCCCTGGCCGGGCTCACACCAGGATGGGACATCCTGG-GGGATGGAGGAT-------CAAGGCCAGGATCCTCCAGACACCTCCCCAGGCTGCGCTGCCAGCCAAACTGGCTTCACTCTCACAGCAGCCCCATCCTTTGCCCTGATTTCTCACCCACTC----CCCACTTCCTGGACCTTT-CCCAGACACCCCCTTCAGACACCAGACTGTAGTGAAACACTACTACATA-----------TCTTCAGATCAAA------CTGATATTTT-----TCAAGAAAATAGGAAAGTCTCCTTAAAACAGCAGATTGAAAGGAAGTGACAG---AGAATAGACGAACGTAATTTCCAGACCATCGTCCTTCAGGGGTGGGGCCCGTGGA-GAAGAAAACCTCTCGGTGCCATTGTCTCGCACCTGGGAGAACG-CACGTGG-----------------------------------------GGCAAAAGGGATGCAGGCAAAGCAGTCCCTTCTGAGACACGGAGAGAAAGAACATCAGGCAGA-----GAGGCAAAGA------
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199785543 1017 + 202140232 GCATCCATTCCACTCCCATTTCCTCTCCCCTCGGCACAGAAA----CTCCTCACGCGCCTCCCAACACTCACCTCCAGGGAGGAGTTGCCTACCCTGCTGGTCTGGTTGTACGAACACTGGCTCTCTGCATTGCAATGGCAGACCACGGTCCTGGGCTGGAGTGCAGAGGCCAAGACAATCTTGGCACTTCTTGCTAGAATCTCCAGAGTGAATGGCTCCAGCGACTTGGGTGTCCACAGCAACGTCCCATTCTCTGCCCCGGGGAAGATGAGAATGTGGAGAGCTGGGAGACTCCTCAGCTCTGTGGTCTGATGCATCCT--CATCTA-ACACCCTGATTGCTGATACGGGGCTTCCCCCACCCCTCTCAGGCCACCTTCCCCCCTCCCCAGACAAATCTCATT-GTCATTTCCTTTGAGCAAGGCTGGTAT-C--GGGGGTGATCCTGGTCACGCTCCCAGCTGGAAGGAGGTGGCACCAGTCCAACATACTGATTGTAGCGGGGAATGCCACAGAGGGGAAAGCAGTTTCCTCC----TGAAGAAACCCCAAAGGGCAGCCCTGGCTGGGCTCACACCAGGATGGGACATCCTGG-GGGATGGAGGAT-------CAAGGCCAGAATCCTCCAGACACCTCCTCAGGCTGCGCTGCCAGCCAAACTGGCTTCACTCTCACAGCAGCCCCATCCTTTGCCCTGATTTCTCACCCACCC----CCCACTTCCTGGACCTTT-CCCAGACACCCCCTTCAGACACCAGACTGTAGTGAAACACTACTACATA-----------TCTTCTGATCAAA------TTTATATTTT-----TCAAGAAAATAAGAAAGTCTCCTTAAAACAGCAGATTGAAAGGAAGTGACAG---AGAATAGACGAACGTAATTTCCAGACCATCGTCCTTCAGGGGTAGGGCCCGTGGA-GAAGAAAACCTCTCAATGCCATTGTCTCGCACCTGGGAGGACG-CACGTGG-----------------------------------------GGCAAAAGGGATGCAGGCAAAGCAGTCCCTTCTGAGACACGGGGAGAAGGAACATCAGGCAGA-----GAGGCAAAGA------
i ponAbe2.chr3                 I 830 C 0
s nomLeu3.chr11                120874324 1017 + 123690457 GCATCCGTTCCACTCCCATTTCCTCTCCCCTCGGCACAGACA----CTCCTCACCCGCCTCCCAGCACTCACCTCCAGGGAGGAGTTGCCCACCCTGCTGGTCTGGTTGTACAAACACTGGCTCTCTGCACTGCAATGGCAGACCACGGTCCTGGGCTGGAGTGCAGATGCCAAGCCAATCTTGGCACGTCTTGCTAGAATCTCCAGAGTGAATGGCTCCAGCGACTTGGGTGTCCACAGCAACGTCCCATTCTCTGCCCGGGGGAAGATGAGAACGTTGAGAGCTGGGAGACTCCTCAGCTCTGTGGTCTGACGCATCCT--CATCTA-ACACCCTGACTGCTGATACTGGGCTTCCCCCACCCCTCTCAGGCCACCCTCCCCCCTCCCCAGACAAATCTCATTGGTCATTTCCTTTGAGCAAGGCTGGTAT-C--GGGGGTGATCCTAGTCACGCTCCCAGCTGGAAGGAGGTGGCACCAGTCCAACATACTGATTGTAGCGGGGAACGCCACAGAGGGGAAAGCGGTTTCCCCC----TGAAGAAACCCCAAA-GGCAGCCCTGGCTGGGCTCACACCAGGATGGGACATCCTGG-GGGATGGAGGAT-------CAAGGCCAGGATCCTCCAGACACCTCCCCAGGCTGCGCTGCCGGCCAAACTGGCTTCAGTCTCACAGCAGCCCCATCCTTTGCCCTGGTTTCTCACCCACCC----CCCACTTCCTGGACCTTT-CCCAGACACCCCCTTCAGACACCAGACTGTAGTGAAACACTGCTACATA-----------TCTTCTGATCAAA------CTTATATTTT-----TCAAGAAAATAGGAAAGTCTCCTTAAAACAGCAGATTGAAAGGAAGTGACAG---AGAATAGACGAACGTAATTTCCAGATCATCGTCCTTCAGGGGTGGGGCCCGTGGA-GAAGAGAATCTCTCAATGCCATTGTCTCGCACCTGGGAGGACG-TACGTGG-----------------------------------------GGCAAAAGGGTTGCAGGCAAAGCAGTCCCTTCTCAGACGCGGAGAGAAAGAACATCAGGCAGA-----GAGGCAAAGA------
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           37062 1046 +    111706 GCATCCGTTCCACTCCCGTTTCCTCTCCCCTCGGCACAGAAA----CTCCTCACCTGCCTCCCAACACTCACCTCCAGGGAGGAGTTGCCCACCCTGCTGGTCTGGTTGTACAAACACTGGCTCTCTGCATTGCAATGGCAGACCACAGTCCTGGGCTGGAGTGCAGATGCCAAGCCAATCTTGGCACTTCTCGCTAGAATCTCCAGAGTGAATGGCTCCAACGACTTGGGTGTCCATAGCAACGTCCCATTCTCTGCCCCGGGGAAGATGAGAACGTTGAGAGCCGGGAGACTCCTCAGCTCTGTGGTCTGATGCATCCT--CATCCA-ACACCCTGATTGCTGATGCGGGGCTTCTCCCACCCATCTCAGGCCA-CCTCCCCACTCCCCAGACAAATCTCATTGGTGATTTCCTCTGAGCAAGGCTGGTAT-C----GGGTGATCCTGGTCATGCTCCCAGCTGGAAGGAGGTGGCACCAGTCCAACATACTGATTGTAACGGGGGACACCACAGAGGGAAAAGCAGTTTCCCAC----TGAAGAAACCCCAAAGGGCAGCCCTCGCTGGGCTTGCACCAGGATGGCACATCCTGG-GGGATGGAGGAT-------CAACGCCAGGATCCTCCAGGCACCTCCCCAGGCTATGCTGCCAGCCAAACCAGCTTCATTCTCACAGCAGCCCCATCCTTTGCCCTGATTTCTCACCCACCC----CCCACTTCCTGGGCCTTT-CCCA-ACACCCCCTTCAGACACCACACTGTAGTGAAACACTGCTACACA-----------TCTTCTGATCCAA------CTTACACTTT-----TCAAGAAAATAGGAAAG----CCTAGAACAGCAGATTGAAAGGAAGTGACAG---AGAACAGACGAACGCAATTTCCAGACCATCGTCCTCCAGGGATGGAGCCCGTGGA-GAATAAAATCTCCCAACGCCGTTGTCTTGCACCTGGAAGGACG-CACGTGG-----GGCACAGTTGTCTCACACTTGGGAGGACGCATGTGAGGCAAAAGGGATGTGGGCAAAGCAGTCCCTTCTGGCACACGGAGAGAAAGAACGTCAGGCAGA-----GAGGTAAAGA------
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     72308 1047 + 192460366 GCATCCGTTCCACTCCCGTTTCCTCTCCCCTCGGCACAGAAA----CTCCTCACCTGCCTCCCAACACTCACCTCCAGGGAGGAGTTGCCCACCCTGCTGGTCTGGTTGTACAAACACTGGCTCTCTGCATTGCAATGGCAGACCACAGTCCTGGGCTGGAGTGCAGATGCCAAGCCAATCTTGGCACTTCTTGCTAGAATCTCCAGAGTGAATGGCTCCAACGACTTGGGTGTCCATAGCAACGTCCCATTCTCTGCCCCGGGGAAGATGAGAACGTTGAGAGCCGGGAGACTCCTCAGCTCTGTGGTCTGATGCATCCT--TATCCA-ACACCCTGATTGCTGATGCGGGGCTTCTCCCACCCATCTCAGGCCA-CCTCCCCACTCCCCAGACAAATCTCATTGGTGATTTCCTTTGAGCAAGGCTGGTAT-C----GGGTGATCCTGGTCATGCTCCCAGCTGGAAGGAGGTGGCACCAGTCCAACATACTGATTGTAACGGGGGACACCACAGAGGGAAAAGCAGTTTCCCAC----TGAAGAAACCCCAAAGGGCAGCCCTCGCTGGGCTTGCACCAGGATGGCACATCCTGG-GGGATGGAGGAT-------CAAGGCCAGGATCCTCCAGGCACCTCCCCAGGCTATGCTGCCAGCCAAACCAGCTTCATTCTCACAGCAGCCCCATCCTTTGCCCTGATTTCTCACCCACCC----CCTACTTCCTGGACCTTT-CCCAGACACCCCCTTCAGACACCACACTGTAGTGAAACACTGCTACACA-----------TCTTCTGATCCAA------CTTACACTTT-----TCAAGAAAATAGGAAAG----CCTAGAACAGCAGATTGAAAGGAAGTGACAG---AGAACAGACGAACGCAATTTCCAGACCATCGTCCTCCAGGGATGGAGCCCGTGGA-GAATAAAATCTCCCAACGCCATTGTCTTGCACCTGGAAGGACG-CACGTGG-----GGCACAATTGTCTCACACTTGGGAGGACGCATGTGAGGCAAAAGGGATGTGGGCAAAGCAGTCCCTTCTGGCACACGGAGAGAAAGAACGTCAGGCAGA-----GAGGCAAAGA------
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     69687 1049 - 187378091 GCATCTGTTCCACTCCCGTTTCCTCTCCCCTCGGCACAGAAA----CTCCTCACCTGCCTCCCAACACTCACCTCCAGGGAGGAGCTGCCCACCCTGCTGGTCTGGTTGTACAAACACTGGCTCTCTGCTTTGCAATGGCAGACCACagtcctgggctggagtgcagatgcCAAGCCAATCTTGGCACTTCTCGCTAGAATCTCCAGAGTGAATGGCTCCAACGACTTGGGTGTCCATAGCAACGTCCCATTCTCTGCCCCGGGGAAGATGAGAACGTTGAGCGCCGGGAGACTCCTCAGCTCTGTGGTCTGATGCATCCT--CATCTA-ACACCCTGATTGCTGATGCGGGGCTTCTCCCACCCCTCTCAGgccaccctccccactccccagacAAATCTCATTGGTGATTTCCTTTGAGCAAGGCTGGTAT-C--AGGGGTGATCCTGGTCACGCTCCCAGCTGGAAGGAGGTGGCACCAGTCCAACATACTGATTGTAACGGGGGACACCACAGAGGGGAAAGCAGTTTCCCAC----TGAAGAAACCCCAAAGGGCAGCCCTCACTGGGCTTGCACCAGTATGGCACATCCTGG-GGGATGGAGGAT-------CAAGGCCAGGATCCTCCAGGCACCTCCCCAGGCTATGCTGCCAGCCAAACCAGCTTCATTCTCACAGCAGCCCCATCCTTTGCCCTGATTTCTCACCCACCC----CCCACTTCCTGGACCTTT-CCCA-ACACCCCCTTCAGACACCACACTGTAGTGAAACACTGCTACACA-----------TCTTCTGATCCAA------CTTACACTTT-----TCAAGAAAATAGGAAAG----CCTAGAACAGCAGATTGAAAGGAAGTGACAG---AGAACAGACGAACGCAATTTCCAGACCATCGTCCTCCAGGGATGGAGCCCGTGGA-GAATAAAATCTCCCAACGCCGTTGTCTTGCACCTGGAAGGACG-CACGTGG-----GGCACAATTGTCTCACACTTGGGAGGACGCATGTGAGGCAAAAGGGATGTGGGCAAAGCAGTCCCTTCTGGCACACGGAGAGAAAGAACGTCAGGCAGA-----GAGGCAAAGA------
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   421060  958 -  91754291 GCATCCGTTCCACTCCCGTTTCCTCTCCCCTCGGCACAGAAA----CTCCTCACCTGCCTCCCAACACTCACCTCCAGGGAGGAGTTGCCCACCCTGCTGGTCTGGTTGTACAAACACTGGCTCTCTGCATTGCAATGGCAGACCACAGTCCTGGGCTGGAGGGCAGATGCCAAGCCAATCTTGGCACTTCTTGCTAGAATCTCCAGAGTGAATGGCTCCAACGACTTGGGTGTCCATAGCAACGTCCCATTCTCTGCCCCGGGGGAGATGAGAACGTTGAGAGCCAGGAGACTCCTCAGCTCTGTGGTCTGATGCATCCT--CATCCA-ACACCCTGATTGCTGGTGCGGGGCTTCTCCCACCCCTCTCAGGCCACCCTCCCCACTCCCCAGACAAATCTCATTGGTCATTTCCTTTGAGCAAGGCTGGTAT-C---GGGGTGATCCTGGTCACGCTCCCAGCTGGAAGGAGGTGGCACCAGTCCAACATACTGATTGTAACGGGGGACACCACAGAGGGAAAAGCAGTTTCCCAC----TGAAGAAACCCCAAAGGGCAGCCCTCGCTGGGCTTTCACCAGGATGGCACATGCTGG-GGGATGGAGGAT-------CAAGGCCAGGGTCCTCCAGGCACCTCCCCAGGCTATGCTGCCAGCCAAACCAG-------------------------------------------------------------------------------------------------ACTGTAGTGAAACACTGCTACACA--------------TCTGATCCAA------CTTACACTTT-----TCAAGAAAATAGGAAAACCTCCCTAGAACAGCAGATTGAAAGGAAGTGACAG---AGAACAGATGAACGCAATTTCCAGACCATCGTCCTCCAGGGATGGAGCCCGTGGA-GAACAAAATCTCCCAACGCCGTTGTTTTGCGCCTGGAAGGACG-CACGTGGGGCAAA-----ATTGTCTCACACCTAGGAGGACGCATGTGAGGCAAAAGGGATGTGGGCAAAGCAGTCCCTTCTGACATACGGAGAGAAAGAACGTCAGGCAGA-----GAGGCAATGA------
i chlSab2.chr15                C 0 I 8
s calJac3.chr17                   938829  991 -  74750902 GCATCCCTTCAACTCCCATTTCCTCACCCCTTAGCACAGACA----CTAACCACCCTCCTCCCAACACTCACCTCAAGGGAGGAGCTGCCTACCCTGCTGGTCTGGTTGTACAAACACTGGCTCTTTGCACTGCAGTAGCAGACCATGGTCCTGGGCTGGAGTGCAGACGACAAGCCAGTCTTGGCACTTCTTGCTAGAATCTCCAGAGAGAATGGCTTCAGTGACTTGGGTGTCCACAGCAATGTCCCATTCTCTGCCCGGGGGAAAATGAGATCATTGAGAGCTGGGAGACTCCTCTGCTCCGTGGTCTGATGCATCCTGGCATCTA-ACACCCTGATTGCTGATGC-GGGCTTCCCCC-CCACTCTCAGACCACCCT-CCCCTGCCCCAGACAGATCTCACTGGTCATTTTCTTTGAGCAAGGCTGGTATGC--GGGGGTAATACTGGTCAAACTCCCAGCTGGAAGGAGGTAGCACCAGCCCAACTTACTGACTGTAGCAGGGGACTCCACAGAGGGGAAAGCAGTTTCCCCC----TGAAGAAACCCCAAAGGGCAGCCCCGCCTGGGCTTGCACTAGGATGGGACCTCCTGG-GGGATGCAGGAT-------AAAGGCCAGGGTCCTCCAGACACCTCCCCAGGCTATGCTGCCAGTCAAACTGGTTTCAGTCTCATGGCAGTCCCATACTTTTCCCTGATTTCTCACCCAC-C----CCCACTTCCTGGACCTTTGACCAGACAGCCCCTCCAG------------------------CGATATA-----------TCTTCTGATCAAA------TTTATATTTT-----TCAAGAAAATACGAAAGTCTCCTTAAAACAGCAGATTGAAAGGAAGTCAC----------AGATGAATGTAATTTCCAGACCCTCATTCTTCAAGGGTGGA-CCGGTGGA-GCAGAAAATCTCCCAGTGCCATTGTCTTACACCTGGGAGGACA-CACGGGG-----------------------------------------GGCAAAGGGGATGCAGGCAGAGCAGTCCCTTCTGACACACAGAGAGGAAGGAACTCAGGCACCCTCCTGAGGCAAAGG------
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65432809  863 -  98207768 GCATCC------------------CTCCACTTGCC-----------CGCCTCCCCCAGCCTCCACTACTCACCTCAAGGGAAGAATTGCCCTCTTTGCTGGTTTCATTGTACAAACACTGCTCCTCCTTACTGCAGAAGCAAGCCACGGTCTTGGGCTGGAGTACCCATGACAAGTTAGTCCTGACATCCCTCGCTAGAATCTCCAGGGTACACGCTTCTGGGGATGTTGGTGTCCACTGCAAACTCCCGTTTTCTGTCC-AGAGAAAAGGAGACC-TCAGTGTCTGGGGGAGCCCTCCGCTCTGTGGTCAG-TGCATCCTGGCATCTA-ACACTCGAACTACGGAGGT-GGTCTTCCCACACC---CTCAGG-CATCCT-----------------------------------TCTGAGTAGAGCTGGGGT-TCCCAGGGTGATGGTGGTCATGCTCCTAGCTGGAGGGAGGCAGCACCTGCTGAACATGCTGGGTGTAGGTAGAAATA-CACATAAGGGAAGGCTACCCACCCCCTAATGAAGAGGCCCCTGAATGCATCCCTGCCTGTGGCTGTACCAGGATGGGTCATGATGG---------GGAC-------CAAG--CATGGTCCTCTTAACACATCCCCAAACTTCAGTG-----TGGAATGGCTTCACCTCC----CAGCCTC-TCTTCTGCCTTTTTAACGTCCCGTCCT----CTGACTTTCCAGGCCTGG-----GATACCTC-------------------------------------------------------ATCAAA---------------T-----GTCAGAATACAGAGAAT--------AAAGAACAGCTTGGAAGGAACAGAGAGTA-GGGGTGGAAGGGAGTTAACTTCATACCATCGATTTTCAGG---ATGCCCAGGGTG-GCAGAAAGCCGTGTAATGCCACTG---CATGCCAAGGTTGTGC-CATAAGG-----------------------------------------AACAAAGAACGTGT-GACGGAGTGACCCCTCCGTGCCCAGAAAAGCAAAAGGAGATAGTTTGG-----TGGTCA----------
i mm10.chr16                   I 2 C 0
s canFam3.chr33                 29070475  974 +  31377067 ACATCGCTTCCGTTCCCACTGCCTTTCCCCTCAACAAGGAAGTCTCCCTCCCACCCTCCTCCTTTCACTCACCTCCAGGGAGGAATTGCCCATCCAGCCCGTCTGATTATATAGACACTGGCTCCTGTCCTTGCAAGCGCAGACCACTGTCCTTGGCTGGAGCACAGATGACAAGTTGACTTTGACGTTTCTTGCTAGAATCTCCAGGGTGAATGGTTCCAAGGACTTTGGTGTCCACAGCAGTGTCCCGTTCTCTGCCCCAGGGAAGACAAGACCGTT-AGGGCTGGGGGCCTCGGCTGCT-TGCTGTCTGACACGTCCT----------------GAGAGCTGATGTGGGCCTTTCTCTGCCTCTCTCAGGCCACCCCTC--------------AAAGTCATCAGGCATTTCCT-TGAGCTCGGCTGGCTT-C-CTGGAGTGATCTTGGTC--GCCCCACGCT----GGAGGTAGCATGAGCCCCACTGAGTGATTGCAG-GTGGAACTCCAGAGAGGG-AAGGCAGTTGCCCCC----TGAAGAGAT--------GCAACCCTGCCCAGGCCTGCACCGGGACGGGACATCTAGGAGGGACAGAGAATAAGGCCCCAAGGCTAGGATCCCCTTGATGCTTCCCCAGGCTACCCTGTAGGCAAAACTGGCTTCCCCTTCACAGCAGCCCCATCCCTGGCCCTGATTTCTTGCCCACCCTCCTCCCGCTTCTTGCACCTTT----------GACCTTCAGACACCAGACTACAGTGAAACGCTGCTACGTATCAGCAAGGACTCTTCTGATCCAAAGGTGTCTTATGGTTTGTCTCTTACG-------GAAAGTCTCCTTAAAACAGCAGGTTGAGAATCGTTGATAGTAGGGGACAGACAAGAGCAGCTCCCAGACTATCACTCTTCAGGAGAGGAGCCCAGGGAGGGAGAAAATCTCCTG-----ATTGGCTGGCACCTGGGAGGCTGCCACCTGG-----------------------------------------CGCCAAAGGG-----CGCAAAG------------------AGAAAGAAAGAAAATGGGCCAGA-----GAG----AGGTGCTCT
i canFam3.chr33                C 0 C 0

a score=17110.000000
s hg38.chr3_KI270935v1_alt        128569 10 +    197351 GAACGCAAAA
s panTro4.chr3_GL389630_random     91843 10 +    103936 GAACGCAGAA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199786560 10 + 202140232 GAACGCAGAA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120875341 10 + 123690457 GAACGCAGAA
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           38108  8 +    111706 -AATGCAGA-
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     73355  8 + 192460366 -AATGCAGA-
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     70736  8 - 187378091 -AATGCAGA-
i papAnu2.chr2                 C 0 C 0
s calJac3.chr17                   939820 10 -  74750902 GAACGCAGAA
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65433672 10 -  98207768 GAGTCCAGAG
i mm10.chr16                   C 0 I 1
s canFam3.chr33                 29071449 10 +  31377067 GAGCTCAAAA
i canFam3.chr33                C 0 C 0
e chlSab2.chr15                   422018  8 -  91754291 I

a score=136890.000000
s hg38.chr3_KI270935v1_alt        128579 72 +    197351 -TATG-CCCCCC-GGGGCTTTGGTTTAGCCAAGAACAGTCACCCTCAGAATTAGTGCTGGCAACAGACAGAAAGT
s panTro4.chr3_GL389630_random     91853 73 +    103936 -TATGCCCCCCC-AGGGCTTTGGTTTAGCCAAGAACAGTCACCCTCAGAATTAGTGCTGGCAACAGACAGAAAGT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199786570 72 + 202140232 -TATG-CCCCCT-GGGGCTTTGATTTAGCCAAGAACAGTCACCCGCAGAATTAGTGCTGGCAACAGACAGAAAGT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120875351 45 + 123690457 -TATG-CCCCCT-GGGGCTTTGGTTTAGCCAAGAACAGTCACCCGCAG---------------------------
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           38116 45 +    111706 -TATG-CCCCCT-GGGGCTTTGGTTTAGCCAAGAACAGTCACCCACAG---------------------------
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     73363 45 + 192460366 -TATG-CCCCCT-GGGGCTTTGGTTTAGCCAAGAACAGTCACCCACAG---------------------------
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     70744 45 - 187378091 -TATG-CCCCCT-GGGGCTTTGGTTTAGCCAAGAACAGTCACCCACAG---------------------------
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   422026 45 -  91754291 -TATG-TCCCCT-GGGGCTTTGGTTTAGCCAAGAACAGTCACCCACAG---------------------------
i chlSab2.chr15                I 8 C 0
s calJac3.chr17                   939830 63 -  74750902 -CACG-CTCCCTGGGGGCTTTGGTTTAGCCAAGAACAGCCA-CCGCAGAATTAGTGCTGGCAACAG---------
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65433683 44 -  98207768 -CAGG-TCCCTG-ATGATTCTGGTTTAGCAAAGAA-AGTCACCATCCC---------------------------
i mm10.chr16                   I 1 C 0
s canFam3.chr33                 29071459 73 +  31377067 TAAGG-TCCCTA-ATGGCTTTAGTTTAGCAAAGAATAGTCTTTAGCATAAGTGGTGCTGGCAACTGAAGGGAAGT
i canFam3.chr33                C 0 I 192

a score=22541.000000
s hg38.chr3_KI270935v1_alt        128651 43 +    197351 GGCATCCCTTTGATGCCCTTGGACCCTTTGAATTAGTGCTGGC
s panTro4.chr3_GL389630_random     91926 43 +    103936 GGCATCCCTTTGATGCCCTTGGACCCTTTGAATTAGTGCTGGC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199786642 43 + 202140232 GGCATCCCTTTGATGCCCTTGGACCCTTTGAATTAGTGCTGGC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120875396 13 + 123690457 ------------------------------AATTAGTGCTGGC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           38161 13 +    111706 ------------------------------AATTAGTGCTGGC
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     73408 13 + 192460366 ------------------------------AATTAGTGCTGGC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     70789 13 - 187378091 ------------------------------AATTAGTGCTGGC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   422071 13 -  91754291 ------------------------------AATTAGTGCTGGC
i chlSab2.chr15                C 0 C 0
s mm10.chr16                    65433727  4 -  98207768 ---------------------------------------TTCC
i mm10.chr16                   C 0 C 0
e canFam3.chr33                 29071532 192 +  31377067 I
e calJac3.chr17                   939893  0 -  74750902 C

a score=978643.000000
s hg38.chr3_KI270935v1_alt        128694 303 +    197351 AACAGACGAAAGCAGCGTCCCTTGTGC--TTGGAGCCTTTGGCCCTGATCATGGATGTAGGGCTCGGGGTCTCTAACACCTTTACGGAGAGGGAGCGATGGCACTCTACTGGGTCCTAGCCCAGGAAACCAGACAAGGAGAGACACGGC--TAGGTAAACATGGTTGCCAGAC--AAAAAGAGCAAGAAAGGTACCAAACGAAAGTATTTTTCATATTTCTTTAAATCTTGTCCTACATTAGAGCCTTCCTTTAATAGATATAAAAATGTTGTAAATTGGTCATT-TTAAA-TGTTGCACTTGATTATTCT
s panTro4.chr3_GL389630_random     91969 303 +    103936 AACAGACGAAAGCAGCATCCCTTGTGC--TTGGACCCTTTGGCCCTGATCATGGATGTAGGGCTCGGGGTCTCTAACACCTTTACGGAGAGGGAGCGATGGCACTTTACTGGGTCCTAGCCCAGGAAACCAGACAAGGAGAGACACGGC--TAGGTAAACATGGTTACCAGAC--AAAAAGAGCAAGAAAGGCACCAAACGAAAGTATTTTTCATATTTCTTTAAATCTTGTCCTACACTAGAACCTTCCTTTAATAGATATAAAAATGTTGTAAATTGGTCATT-TTAAA-TGTTGCACTTGATTATTCT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199786685 303 + 202140232 AACAGACGAAAGCAGCATCCCTTGTGC--TTGGACCCTTTGGCCCTGATCATGGATGTAGGGCTCAGGGTCTCTAACACCTTTACGGAGAGGGAGCGATGGCACTTTACTGGGTCCTAGCCCAGGAAACCAGACAAGGAGAGACACGGC--TAGGTAAACATGGTTACCAGAC--AAAAAGAGCAAGAAAGGTACCAAACAAAAGTATTTTTTATATTTCTTTAAATCTTGTCCTACATTAGATCCTTCCTTTAATAGATATAAAAATGTTGTAAATTGGTCATT-TTAAA-TGTTGCACTTGATTATTCT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120875409 305 + 123690457 AATGGACGAAAGTGGCATCCCTTGTGC--TTGGACCCTTTCGCCCTGATCATGGATGTAGGGCTCGGGGTCTCTAACACCTTTACGGAGAGGGAGCGATGGCACTTTACTGGGTCCTAGCCCAGGAAACCAGGCAAGGAGAGACATGGCTATAGGTAAACATGGTTACCAGAC--AAAAAGAGCGAGAAAGGTACCAAACAAAAGTATTTTTTATATTCCTTTAAATCTTGTCCTACATTACATCCTTCCTTTAATAGATATAAAAATGTTGTAAATTGGTCATT-TTAAA-TGTTGCACTTGATTATTCT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           38174 302 +    111706 AACAGGC---AGCGGCATCCCTTGTGC--TGGGACCCTTTGGCCCTGATCGTGGATGCAGGGCTCAGGGTCTCTAACACCTTTATGGAGAGGAAACGATGGTACGTTACTGGGTCCTAGCCCAGGAAATCAGACAAGGAGAGACACAGC--TAGGTAAACACGGTTACCAGACATAAAAAGAGCAAGAAAGGTACCAAATGAAAGTATTTTTTATATTTCTTTAAGTCTTGTCCTACATTAGATCCTTCCTTTAATAGATATAAAAATGTTGTAAATTGGTCATT-TTAAA-TGTTGCACTTGATTATTCT
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     73421 302 + 192460366 AACAGGC---AGCGGCATCCCTTGTGC--TGAGACCCTTTGGCCCTGATCGTGGATGCAGGGCTCAGGGTCTCTAACACCTTTATGGAGAGGAAACGATGGTACGTTACTGGGTCCTAGCCCAGGAAATCAGACAAGGAGAGACACAGC--TAGGTAAACACGGTTACCAGACATAAAAAGAGCAAGAAAGGTACCAAATGAAAGTATTTTTTATATTTCTTTAAGTCTTGTCCTACATTAGATCCTTCCTTTAATAGATATAAAAATGTTGTAAATTGGTCATT-TTAAA-TGTTGCACTTGATTATTCT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     70802 302 - 187378091 AACAGGC---AGCGGCATCCCTTGTGC--TGGGACCCTTCGGCCCTGATCGTGGATGCAGGGCTCAGGGTCTCTAACACCTTTATGGAGAGGAAGCGATGGTATGTTACTGGGTCCTAGCCCAGGAAATCAGACAAGGAGAGACACAGC--TAGGTAAACACGGTTACCAGACATAAAAAGAGCAAGAAAGGTAccaaatgaaagtattttttatatttctttaagtcTTGTCCTACATTAGATCCTTCctttaatagatataaaaatgttGTAAATTGGTCATT-TTAAA-TGTTGCACTTGATTATTCT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   422084 298 -  91754291 AACAGGC---AGCGGCATCCCTTGTGC--TGGGATCCTTTGGCCCTGATCGTGG----AGGGCTCAGGGTCTCTCACACCTTTATGGAGAGGAAGCGATGGTACGTTACTGGGTCCTAGTCCAGGAAATCAGGCAAGGAGAGACACAGC--TAGGTAAACACGGTTACCAGACATAAAAAGAGCAAGAAAGGTACCAAATGAAAGTATTTTTTATATTTCTTTAAGTCTTGTCCTACATTAGATCCTTCCTTTAATAGATATAAAAATGTTGTAAATTGGTCATT-TTAAA-TGTTGCACTTGATTATTCT
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   939893 298 -  74750902 -ACAGAG---AGCGGCATCCCCTATTCTTTGAGACCCTTTGGCCCTGATCATGGATGCAGGTCTTGGAGTCTCTAACACCTTTACAGAGAGGGACCCGTGACGCCTTACTGGGTCCTA-TCCAGGAAACCAGACGAGGAGAGACACAGC--TAGGTTAACATGGTTACCACAGACAAAAAGAGCAAGAAAGGTAGTAAACAAAAGTATTTTT-ATATTTCTTTAAATTT--TCCTACATTAGATCCTTCCTTTAATAGATATAAAAATGTTGT-AACTGGTAATT-TTAAACTGTTGCACTTGATT-TTCT
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65433731 257 -  98207768 AAC--------------------------TTTGGCCCTTCAATCCAGCTGCCAG--------CCCAGGTTCTCAGATCCCATTACTAAGAAGGGAAGA-ATTGTGTTA----GTCCCAATCCAGAAAATCAGACAAGGAGACAGAAAAC--CAGATAAGCATAGCTAATGGCCATAAAAACAAC--GAAAAGTACC-AGTGAAGCTATT-----TATATGTTTTGATCTCATTCCACAGTGTGTTATTCATTTAATAGATATGATAATGCTTTAAACTCATTGGT-TT----TATCACATTTATTTATCTT
i mm10.chr16                   C 0 I 1951
s canFam3.chr33                 29071724 297 +  31377067 AAAGAAGGGAAGTTGCATCCTGTGGGC--TTTGACTTTTCCACCCAGGTCACGGTTTTAGGACGAGGGGTCTCC-ACACCAGTACTGACAGGCAGAAATGAGGCTTTGCTTGGTCCCAGTACAGAAGAGCA-ACAGGGAGAGACAGAGT--TGGGCAATCGTGGTTGACCGACATAAAAATAATGAGAACCACGCCGAATGAAGCTATT-----TATACCTTTAAATCCTGTTCCACGTGATAGCCTTCTTTTAATAGATTTGAAAATGCTTTAGATCAGTATTTGTTAAATTGTTACACTCTATTCT---
i canFam3.chr33                I 192 C 0

a score=120503.000000
s hg38.chr3_KI270935v1_alt        128997 40 +    197351 AATAATTTGGTGAATGCATA---A---TGACTAAAGATGACTATAT
s panTro4.chr3_GL389630_random     92272 37 +    103936 AATAATTTGGTGAATGC------A---TGACTGATGATGACTATAT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199786988 40 + 202140232 AATAATTTGGTGAATGCATA---A---TGACTAAAGATGACTGTAT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120875714 40 + 123690457 AATAATTTGGTGAATGCATA---A---TGGCTAAAGATGACTGTAT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           38476 40 +    111706 AATACTTTGGTGAATGCATA---A---TGATTAAAGATGACTGCGT
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     73723 40 + 192460366 AATACTTTGGTGAATGCATA---A---TGATTAAAGATGACTGCGT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     71104 40 - 187378091 AATACTTTGGTGAATGCATA---A---TGATTAAAGATGACTGCGT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   422382 40 -  91754291 AATACTTTGGTGAATACATA---A---TGATTAAAGATGACTGCAT
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   940191 43 -  74750902 AATAATTTGGTGAATGCATAAGGA---TAATTAAAGATGACTGCAT
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29072021 43 +  31377067 AGTAATTCGGTGACCGCATC---AAGCTGGTTAAAGATGATCGTGT
i canFam3.chr33                C 0 C 0
e mm10.chr16                    65433988 1951 -  98207768 I

a score=88696.000000
s hg38.chr3_KI270935v1_alt        129037 27 +    197351 ATGATCAGATTGAGATTAAATGATCTT
s panTro4.chr3_GL389630_random     92309 27 +    103936 ATGATCAGATTGAGATTAAATGATCTT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199787028 27 + 202140232 ATGATCAGATTGAGATTAAATGATCTT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120875754 27 + 123690457 ATGATCAGATTGAGATTAAATGATCTT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           38516 27 +    111706 ATGATCAGATTGAGATTAAATGATCTT
i rheMac3.chrUn_JH291127       C 0 I 528
s macFas5.chr2                     73763 27 + 192460366 ATGATCAGATTGAGATTAAATGATCTT
i macFas5.chr2                 C 0 I 15
s papAnu2.chr2                     71144 27 - 187378091 ATGATCAGATTGAGATTAAATGATCTT
i papAnu2.chr2                 C 0 I 14
s chlSab2.chr15                   422422 27 -  91754291 ATGATCAGATTGAGATTAAATGATCTT
i chlSab2.chr15                C 0 I 14
s calJac3.chr17                   940234 27 -  74750902 ATGATCAGATTGAGATTAAATAATCTC
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65433988 1951 -  98207768 I
e canFam3.chr33                 29072064  0 +  31377067 C

a score=76975.000000
s hg38.chr3_KI270935v1_alt        129064 48 +    197351 CAAAtc-------------tt---------ttttttgagacagagtctcgctctgtca-ccaggctggagt
s panTro4.chr3_GL389630_random     92336 61 +    103936 CGAAtcttttttttttttttt---------ttttttgagacagagtctcgctctgtca-ccaggctggagt
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199787055 55 + 202140232 CGAAtc------ttttttttt---------ttttttgagacagagtctcactctgtca-ccaggctgaagt
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120875781 54 + 123690457 CGCAtc-------tttttttt---------ttttttgagacagagtcttgctctgtca-ccaggctggagt
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     73805 49 + 192460366 -------------ttgttttt---------ttttttgagatggagtcttgctctattgcccaggctggagt
i macFas5.chr2                 I 15 C 0
s papAnu2.chr2                     71185 58 - 187378091 -------------ttgttttttgttttttgttttttgagatggagtctcgctctattgcccaggctggagt
i papAnu2.chr2                 I 14 C 0
s chlSab2.chr15                   422463 55 -  91754291 -------------tttttctt---tttctttttttcgagatggagtctcgctctattgcccaggctggagt
i chlSab2.chr15                I 14 C 0
s calJac3.chr17                   940261 55 -  74750902 TGAATT-------AGttcctt---------tttattgagacagaatcttgctctgttgctcaggctggagt
i calJac3.chr17                C 0 C 0
e rheMac3.chrUn_JH291127           38543 528 +    111706 I
e mm10.chr16                    65433988 1951 -  98207768 I
e canFam3.chr33                 29072064  0 +  31377067 C

a score=113004.000000
s hg38.chr3_KI270935v1_alt        129112 36 +    197351 gcagtgacgcgatctcagctcactgcaacatctgcc
s panTro4.chr3_GL389630_random     92397 36 +    103936 gcagtgacgcgatctcagctcactgcaacatctgcc
i panTro4.chr3_GL389630_random C 0 M 702
s ponAbe2.chr3                 199787110 36 + 202140232 gcagtgatgtgatctcagctcactgcaacatctgcc
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120875835 36 + 123690457 acagtgacgcgatctcagctcactgcaacatctgcc
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           39071 36 +    111706 gcagtgacgcgatctcagttcactgcaacatctgcc
i rheMac3.chrUn_JH291127       I 528 C 0
s macFas5.chr2                     73854 36 + 192460366 gcagtgacgcgatctcagttcactgcaacatctgcc
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     71243 36 - 187378091 gcagtgacgcgatctcagttcactgcaacatctgcc
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   422518 36 -  91754291 gcagtgatgcgatctcagttcactgcaacatctgcc
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   940316 36 -  74750902 acagtgactcgatctcggctcacggcaacatctgcc
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65433988 1951 -  98207768 I
e canFam3.chr33                 29072064  0 +  31377067 C

a score=27318.000000
s hg38.chr3_KI270935v1_alt        129148 10 +    197351 tcctgggttc
s ponAbe2.chr3                 199787146 10 + 202140232 tcctgggttc
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120875871 10 + 123690457 tcctgggttc
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           39107 10 +    111706 tcctaggttc
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     73890 10 + 192460366 tcctaggttc
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     71279 10 - 187378091 tcctaggttc
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   422554 10 -  91754291 tcctaggttc
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   940352 10 -  74750902 tcccgggctc
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29072064 10 +  31377067 TACTGGGTTT
i canFam3.chr33                C 0 C 0
e mm10.chr16                    65433988 1951 -  98207768 I
e panTro4.chr3_GL389630_random     92433 702 +    103936 M

a score=371705.000000
s hg38.chr3_KI270935v1_alt        129158 174 +    197351 -aagcgattctcctgcctcagtctcctgagtagctgggattacaggcatgcaccaccatgcctggcttttttttttttttttgtatttttagtacagacggggtttcaccatgttggccagactggtctcgaactcctgacctcagatgatccgcccacctcggcctcccaaagc
s ponAbe2.chr3                 199787156 167 + 202140232 -aagtgattctcctgcctcagtctcctgagtagctgggattacaggcatgcaccaccatgcccggc-------tatttttttgtatttttagtagagacggggtttcaccatgttggccagactggtctcgaactcctgacctcagatgatcctcctgcctcggcctcccaaagc
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120875881 167 + 123690457 -aagcgattctcctgcctcagtctcctgaagagctgggattacaggcatgcaccaccacgcccggc-------tatttttttgtatttttagtagagacggggtttcaccatgttggccagactggtctcgaactcctgacctcagatgatccgcccgcctcggcctctcaaagc
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           39117 167 +    111706 -aagcgattcttctgcctcagtctcccgaagagctgggattacaggcacccgccaccatgcctggc-------tatttttttgtttttttagtagagatggggtttcaccgtgttggccaggctggtcttaaactcctgacctcagatgatccacccgcgtcggcctcccaaagt
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     73900 167 + 192460366 -aagcgattcttctgcctcagtctcccgaagagctgggattacaggcacccgccaccatgcctggc-------tatttttttgtttttttagtagagatggggtttcaccgtgttggccaggctggtcttaaactcctgacctcagatgatccacccgcgtcggcctcccaaagt
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     71289 168 - 187378091 aaagagattcttctgcctcagtctcccgaagagctgggattacaggcacccgccaccatgcctggc-------tatttttttgtttttttagtagagatggggtttcaccgtgttggccaggctggtcttaaactcctgacctcagatgatccacccgcgtcggcctcccaaagt
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   422564 167 -  91754291 -aagcgattcttctgcctcagtctcccgaagaactgggactacaggcacccgccaccatgcctggc-------tatttttttgtttttttagtagagatggggtttcactgtgttggccaggctggtcttaaactcctgacctcagatgatccacctgcgtcggcctcccaaagt
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   940362 166 -  74750902 -aagtgattctcttgcctcagcctcccaagtaactgggattacaggcgcctgccactacgcctggc-------ta-tcttttatatttttagtacagaagggctttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatccacccaccgtggcctcccaaagt
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65433988 1951 -  98207768 I
e canFam3.chr33                 29072074   0 +  31377067 C
e panTro4.chr3_GL389630_random     92433 702 +    103936 M

a score=261962.000000
s hg38.chr3_KI270935v1_alt        129332 111 +    197351 gctgg----gatgacaggcatgagccaccgcgcccagccTTGAATCAGTTCTATGTGCCCAGAGTCACTCTAGCTATCTGGCCAAA-CCGCCGTAAGCCCGTCACTACTACTTACT
s ponAbe2.chr3                 199787323 111 + 202140232 actgg----gatgacaggtgtgagccactgtgcccagccTTGAATCAGTTCTATGTGCCCAGAGTCACTCTAGCTATCTGGCCAAA-CTGCCATAAGCCCGTCACTACTACTTACT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120876048 111 + 123690457 tctga----gatgacaggcgtgagccaccgcgcccggccTTGAATCAGTTCTGTGTGTCCAGAGTCACTGTAGCTATCTGGCCAAA-CCGCCATAAGCCCGTCACTACTACTTACT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           39284 111 +    111706 gctgg----gatgacaggcctgagccaccacgcccagccTTGAATCAGTTCTATGTGCCCACATTCACTCTACCTATCTGACCAAA-TCACCATAAGCCTGTCACTACTACTTACT
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     74067 111 + 192460366 gctgg----gatgacaggcctgagccaccacgcccagccTTGAATCAGTTCTATGTGCCCACATTCACTCTACCTATCTGACCAAA-TCACCATAAGCCTGTCACTACTACTTACT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     71457 111 - 187378091 gctgg----gatgacaggcatgagccaccgcgcccagccttgaatCAGTTCTATGTGCCCAGATTCACTCTACCTATCTGACCAAA-TCACCATAAGCCTGTCACTACTACTTACT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   422731 111 -  91754291 gctgg----gatgacaggcatgagccaccgcgcccagccTTGAATCAGTTCTATGTGCCCAGATTCACTCTACCTATCTGACCAAA-TCACCATAAGCCTGTCACTACTACTTACT
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   940528 116 -  74750902 gctaggtgtgaggacaggtgtgagccactgtgcccagccTTGAATCTGTCCTATGTGCCCAGAGTCACTCTACCTATCTGGCCAAATTCACCATAAGCCTGTCATTACTACTTACT
i calJac3.chr17                C 0 I 332
s canFam3.chr33                 29072074  88 +  31377067 GGTGG----AATGAC----------------------CTTTGAATCACTTGCGCGGGCCC-GAGACAGCTTTGCTCGCTGGCCAGA-CTTCCAGAAGGCCATCGCTGCTGTTCACT
i canFam3.chr33                C 0 C 0
e mm10.chr16                    65433988 1951 -  98207768 I
e panTro4.chr3_GL389630_random     92433 702 +    103936 M

a score=24160.000000
s hg38.chr3_KI270935v1_alt        129443 7 +    197351 GGGGGGC
s ponAbe2.chr3                 199787434 7 + 202140232 GGGGGGC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120876159 7 + 123690457 GGGGGGC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           39395 7 +    111706 GGGGGGC
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     74178 7 + 192460366 GGGGGGC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     71568 7 - 187378091 GGGGGGC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   422842 7 -  91754291 GGGGGGC
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   940976 7 -  74750902 GGGGGGC
i calJac3.chr17                I 332 C 0
s canFam3.chr33                 29072162 6 +  31377067 -GGGGGC
i canFam3.chr33                C 0 C 0
e mm10.chr16                    65433988 1951 -  98207768 I
e panTro4.chr3_GL389630_random     92433 702 +    103936 M

a score=112460.000000
s hg38.chr3_KI270935v1_alt        129450 34 +    197351 ACCTATTTGAGTTATAGATATCGCTCCTCGGAAA
s panTro4.chr3_GL389630_random     93135 34 +    103936 ACCTATCTGAGTTATAGATATCGCTCCTCGGAAA
i panTro4.chr3_GL389630_random M 702 C 0
s ponAbe2.chr3                 199787441 34 + 202140232 ACCTATTTGAGTTACAGGTATCGCTCCTCGGAAA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120876166 34 + 123690457 ACCTATTTGAGTTATAGGTATCGCTCCTCGGAAA
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           39402 34 +    111706 ACCTATTTGAGTTATACGTATCGTTCCTCAGAAA
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     74185 34 + 192460366 ACCTATTTGAGTTATACGTATCGTTCCTCAGAAA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     71575 34 - 187378091 ACCTATTTGAGTTATATGTATCGTTCCTCAGAAA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   422849 34 -  91754291 ACCTATTTGAGTTATATGTATCGTTCCTCAGAAA
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   940983 34 -  74750902 ACCTATTTGAGTTATAGGTATCATTCCAAAGAAA
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29072168 33 +  31377067 ACCTATCTGAATCATAGGGATCATT-CTCGGAAA
i canFam3.chr33                C 0 C 0
e mm10.chr16                    65433988 1951 -  98207768 I

a score=2169090.000000
s hg38.chr3_KI270935v1_alt        129484 655 +    197351 TGCCGGTCCTGGATATTCAAAT-----GAAAGAGTGACAGCAAGTGTTGCTGGGTGTAGCAATGCAGAATTTCCC---AAA-TTTGACTCTGACCTCATCCCCTACCCACCTCCCCACTCTCCCCAGCCAGCCAAATAGTCCTACCAAAGAGCTCCAAGTCGGTGCAGCTGTCTCTGAGCGTGAAGTTGGCATCCTCAGCATTGCTGGTGTACTGAATCAGCGTGGTCTGCCCCTTGTAGGCTTCAATCACACGACCACCATTGATGGAGGGCGGGTACTGATCTGAAACACAAAG----AGGGAATGGGGGTTCCGAGGCAGGACAGTCTCCTGCTTTATCAGCCTCCTCTCTTTC--TCAA---CTCTAATATGTGTGAGGCATTCCCAGGACTGTGACCCACCTCTGGAAGAAGGAATTATTCTGTGTACCTGCTCT-C-GACTGACGCACAGCAGGCTGGGACTGTACTGCCCACCTAGCCAAATCTTTAGC--CTCTTTCTCTCCCCCCACCTCCTCAAAAAGAG-CTCCTTTCAGATTCTTTCCTGAAC-ACAGTGCTATGCTGGGTATGACAA----------------AAAGTGAATTAGAGAGCAGATTTGTTTGGACCATTACAAAGGGTTGTACCCTTAGACCAA--AGGGTTGTACCTTTGGCAAAGGGCTGAAAACCTGAAGGG
s panTro4.chr3_GL389630_random     93169 634 +    103936 TGCCGGTCCTGGATATTCAAAT-----GAAAGAGTGACAGCAAGTGTTGCTGGGTGTAGCAATGCAGAATTTCCC---AAA-TTTGACTCTGACCTCATCCCCTACCCACCTCCCCGCTCTCCCCAGCCAGCCAAATATTCCTACCAAAGAGCTCCAAGTCAGTGCAGCTGTCTCTGAGCGTGAAGTTGGCATCCTCGGCGTTGCTAGTGTACTGAATCAGCGTGGTCTGCCCCTTGTAGGCTTCAACCACACGACCACCATTGATGGAGGGCGGGAACTGATCTGAAACACAGAG----AGGGAACGGGGGTTCCGAGGCAGGACAGTCTCCCGCTTCATCAGCCTCCTCTCTTTC--TCAA---CTCTAATATGTGTGAGGCATTCCCAGGACTGTGACCCACCTCTGGAAGAAGGAATTATTCTGTGTACCTGCTCT-C-GACTGACGCACAGCAGGCTGGGACTGTACCGCCCACCTAGCCAAATCTTTAGC--CTCTTTCTCTCCCCCCACCTCCTCAAAAAGAG-CCCCTTTCAGATTCTTTCCTGAAC-ACAGTGCTATGCTGGGTATGACAA----------------AAAGTGAATTAGAGAGCAGATTTGTTTAGACCATTA---------------------CAA--AGGGTTGTACCTTTGGCAAAGGGCTGAAAACCTGAAGGG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199787475 629 + 202140232 TGCCGGTCCTGGATATTCAAAT-----GAAAGAGTGACAGCAAGTGTTGCTGGGTACAGCAATGCAGAATTTCCC---AAAGTTTGACTCTGACCTCATCCCCTACCCACCTCCCCACTCT----AACCAGCCAAATATTCTTACCAAAGAGTTTAAAGTCGGTACAGCTGTCTCTGAGCGTGAAGGTGGCATCCTCAGCATTGCTGGTGTACTGAATCTGCGTGGTCTGCCCCTTGTAGGCTTCAACCACACGACCACCATTGATGGAGGGCGGGTACTGATCTGAAACACAAAG----AGGGAATGGGAGTTCCAAGGCAGGACAGTCTCCTGCTTTATCAGCCTCCTCTCTTTC--TCAA---CTCTAATATGTATGAGGCATTCCCAGGACTGTGACCCACCTCTGGAAGAAGGAGTTATTCTGTGTACCTGCTCT-C-GACTGACACACAGCAGGCTGGGACTGTACTGCCCACCTAGCCAAATCTTTAGC--CTCTTTCTCTCCCCCAACCTCCTCAAAAAGAG-CTCCTCTCAGATTCTTTCCTGGAC-ACGGTGCTATGCTGGGTATGACAA----------------AAAGTGAATTAGAGAGCAGATTTGTTTAGACCATTA---------------------C----AGGGTTGTACCTTTGGCAAAGGACTGAAAACCTGAAGGG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120876200 631 + 123690457 TGCCGGTCCTGGATATTCGAAT-----GAAAGATTGACAGCAAGTGTTGCTGGGTACAGCAGTGCAGAATTTCCC---AAAGTTTGACTCCGACCTCATCCCCTACCCACCTCCCCACTCTCCTCAGCCAGCCAAATATTCTTACCAAAGAGCTTAAAGTCGGTACAGTTGTCTCTGAGCGTGAAGGTGGCATCCTCTGCATTGCTGGTGTACTGAATCAGCGTGATCTGCCCCTTGTAGGCTTCAACCACATGACTACCATTGATGGAGGGTGGGTACTGATCTGAAACACAAAG----AGGGAATGGGAGTTCCCAGGCAGGACAGTCTCCTGCTTTATCAGCCTCCTCTCTTTC--TCAA---CTCTAATATGTGTGAGGCTTTCCCAGGACTGTGACCCATCTCTGGAAGAAGGAATTATTCTGTGTACCTGCTCT-C-GAGTAACGCACAGCAGACGGGGACTGTACTGCCCACCTAGCCAAATCTTTAGC--CTCTTTCTCTCCCCCCACCTCCTC--AAAGAG-CTCCTTTCAGATTCTTTCCTGAAC-ATGGTGCTATGCTGGGTATGACAA----------------AAAGTGAATTAGAGAGcagatctgtttagaccatta---------------------c----agggttgtacctttggcaaagggctgaaaacctgaaggg
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           39436 628 +    111706 TGCTGGTCCTGGATATTCAAAT-----GAAAGAGTGATGGCAAGTTTTGCTGGGTATAGCGATGCAAAATTTCCC---AAAGTTTGACTCTGACCTCAT-CCCTACCCACCTCCCCACTCTCC----CCAGCCAAACATTCTTACCAAAGAGCTTAAAGTCAGTCCAGTTGTCTCTGAGCGTGAAGGTGGCATCCTCAGCGTTGCTGGTGTACTGAATCAGCGTGGTCTGCCCCTTGTAGGCTTCAACCACATGACCACCATTGATGGAGGGCGGGTACTGATCTGAAACACAAAG----AGGGGATGGGGGTTCCGAGGGAGGGCAGTCTCCTGCTTTATCAGCCTCCTCTCTTTC--TCAA---ATATAATATGTGTGAGGCATTCCCAGGACTGTGCCCCACCTCTGGAAGAAGGAATTATTCTGTGTACCCGCTCT-C-GACTGACGCACAGCAGGCTGGGACTGTACTGCCCACCTAGCCAAATCTTTAGC--CTCTCTCTCTCCCCCAGCCTCCTCCAAAAGAG-CTCCTTTCGGATTCTTTCCTGAAC-ATGGTGCTATGCTGGGTGTGACAA----------------AAAGCGAATTCGAGAGcagatttgtttagaccgtta---------------------c----agagttgtaccttcggcaaagggctgaaaacctgaaggg
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     74219 628 + 192460366 TGCTGGTCCTGGATATTCAAAT-----GAAAGAGTGATGGCAAGTTTTGCTGGGTATAGCGATGCAAAATTTCCC---AAAGTTTGACTCTGACCTCAT-CCCTACCCACCTCCCCACTCTCC----CCAGCCAAACATTCTTACCAAAGAGCTTAAAGTCAGTCCAGTTGTCTCTAAGTGTGAAGGTGGCATCCTCAGCGTTGCTGGTGTACTGAATCAGCGTGGTCTGCCCCTTGTAGGCTTCAACCACATGACCACCATTGATGGAGGGCGGGTACTGATCTGAAACACAAAG----AGGGGATGGGGGTTCCGAGGGAGGGCAGTCTCCTGCTTTATCAGCCTCCTCTCTTTC--TCAA---ATCTAATATGTGTGAGGCATTCCCAGGACTGTGCCCCACCTCTGGAAGAAGGAATTATTCTGTGTACCCGCTCT-C-GACTGACGCACAGCAGGCTGGGACTGTACTGCCCACCTAGCCAAATCTTTAGC--CTCTCTCTCTCCCCCAGCCTCCTCAAAAAGAG-CTCCTTTCGGATTCTTTCCTGAAC-ATGGTGCTATGCTGGGTATGACAA----------------AAAGCGAATTCGAGAGcagatttgtttagaccatta---------------------c----agagttgtaccttcggcaaagggctgaaaacctgaaggg
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     71609 630 - 187378091 TGCCGGTCCTGGATATTCAAAT-----GAAAGAGTGACAGCAAGTTTTGCTGGGTATAGCAATGCAAAATTTCCC---AAAGTTTGACTCTGACCTCATCCCCTAcccacctccccactctcc----ccagcCAAACATTCTTACCAAAGAGCTTAAAGTCAGTACAGTTGTCTCTGAGCGTGAAGGTGGCATCCTCAGCGTTGCTGGTGTACTGAATCAGCGTGGTCTGCCCCTTGTAGGCTTCAACCACACGACCACCATTGATGGAGGGCGGGTACTGATCTGAAACAC-AAG----AGGGGATGGGGGTTCCGAGGGAGGGCAGTCTCCTGCTTTATCAGCCTCCTCTCTTTC--TCAA---CTCTAATATGTGTGAGGCATTCCCAGGACTGTGCCCCACCTCTGGAAGAAGGAATTATTCTGTGTACCTGCTCT-C-GACTGACGCACAGCAGGCTGGGACTGTACTGCCCACCTAGCCAAATCTttagcctctctctctctcccccagcctcctcaAAAAGAG-CTCCTTTCGGATTCTTTCCTGAAC-ATGGTGCTATGCTGGGTATGACAA----------------AAAGTGAATTAGAGAGCAGATTTGTTTAGACCATTA---------------------C----AGAGTTGTACCTTCGGCAAAGGGCTGAAAACCTGAAGGg
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   422883 630 -  91754291 TGCCGGTCCTGGATATTCAAAT-----GAAAGAGTGACGGCAAGTTTTGCTGGGTATAGCAATGCAAAATTTCCC---GAAGTTTGACTCTGACCTCAT-CCCTACCCACCTCCCCACTCTCC----CCAGCCAAACATTCTTACCAAAGAGCTTAAAGTCAGTACAGCTGTCTCTGAGTGTGAAGGTGGCATCCTCAGCGTTGCTGGTGTACTGAATCAGCGTGGTCTGCCCCTTGTAGGCTTCAATCACACGACCACCATTGATGGAGGGCGGGTACTGATCTGAAACACAAAG----AGGGGATGGGGGTTCCGAGGGAGGGCAGTCTCCTGCTTTATCAGCCTCCTCTCTTTC--TCAA---CTCTAATATGTGTGAGGCATTCCCAGGATGGTGCCCCACCTCTGGAAGAAGGAATTATTCTGTGTACCTGCTCT-C-GACTGACGCACAGCAGGCTGGGACTGTACTGCCCACCTAGCCAAATCTTTAGCCTCTCTCTCTCTCCCCCAGCCTCCTCAAAAAGAG-CTCCTTTCGGATTCTTTCCTGAAC-ATGGTGCTATGCTGGGTATGACAA----------------AAAGCGAATTAGAGAGcagatttgtttagaccatta---------------------c----agagttgtacctttggcaaaggactgaaaacctgaaggg
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   941017 630 -  74750902 TGCCAGTCCTGGATATTCAAAT-----GAGCAAGTGACAGGAAGTTTTGCTGGGTATAGCGATGCAGAA-ATCCC---AAAGTTTGATTCCGACCTCATTCCCTACCCACCTCCCCACTTTCC----CCAGTCAAACATTCTTACCGAAGAGCTTCAAGTCAGTACAATTGTCTCTGAGCATGAAGGTGACATTCTCAGCATTGCTGGTGTACTGAATCAGCACGGTCTGCCCCTTGTAGGCTTCAACCACATGGCGACCCTCGATGGAGGGTGGGTACTGATCTGAAAGACAAAG----AGGGGATGGGGGTTCCGAGGTGGGACAGTCTCCTGCTTCATCAGCCTCCTCTCCTTC--TCAA---CTACAAGATACGTGAGGCATTCCCAGGACTGGGACCCACCTCTGGAAGAAGGAACTATTCTGGGTACCTGCTCT-CAGACCGATGAACAGCAGGCTGGGACTGTGCTGCCCACCTATCCAAATCTTCAGC-TCTCTTTCTCTCCCCC-ACCTCCTCAAAAAGAGTTTCCTTTCATATTCTTTCCTGAAC-ACAGTGCTATGCCGGGTGTGGCAA----------------AAAGTGAATTACAGAGCACGCTTgtttagatcatca---------------------c----agagttgtgcctttggcaaagggctgaaaacctggaggg
i calJac3.chr17                C 0 I 452
s mm10.chr16                    65435939 618 -  98207768 TGTTGGTCTTGATTATTCAAATTAAAAAAAAAAGAGGCAGGGCACTGTACAGAATAAAGAGACGTAAGGCAGCCC---AAG--ATGACTCC---------------------TCCCATCCTAT--TGCCAGCCAAAGATTCATACCAAAGAGCTTAAAGCCACTACATTTCTTGGAGAGGCTGAGTGTGGCATCCTTAGAGTTGCTGGTGATCTCAGTGGTCACTGTCTGCCCCTTGTAGGCTTGAATCTTGCTGCTGCAGTTGATAGAGGGTGGGTACTGATCTGAAACAGAGAAGCACGGAGACTAGTTATTC----ACAGGGCGCTCTCCACTCTTCCC--TTTCTGCTCTTTC--CCCA---TGACTCTTCCTCCGAGTCCTTACCACGCCTGCGGCCGGCCTCTGGGAGCAGAACTCAGTCTTCCTCTGTGCTCTGC-AAATGGTGCCGAGCATGTTGGGTTTGTGCTGCCCACT--GTCTAACCTTTAGACTCCCTTTTCCTTTCCTTTTCTTTTTGTATATA--TTCTTTTAAAATTA------GAACTGtatttttattgtgtgtacgtcaatgtttttgcttgtatgtacgtgtgtcggtgtgaagg--tgttggatccattg---------------------caactggagttaaagat--ggttgtgagctg----ccatgtggg
i mm10.chr16                   I 1951 C 0
s canFam3.chr33                 29072201 604 +  31377067 TGCTGGTCCTAGATATTCCGGT-----GGAAAAGTGACATGAAATTGCCCAGGGCGTGATAATGCAAAATTACCTTAAAAAGCTTGACTCTGAGCTCATCCCTT----------CCACCC-------GCACCCAAGGGCTCTTACCGAAGAGCTTGAAGTCACTATTGCTGTTCCTCAGAGTGAATGTGACGTGCTCAGGGTGGCTGGTGTACTGAACCAGCGTGGTCTGCCCCAGGTAGGCTTGCACCGCCTGTGGACCCTCGATCGACGGGGGGTACTCATCTGAAACACAAAC----AGGAGATTCGGGTTTGGGGGCAGGACACTCTCTTGCCTCATGGGCCTCGTCTCTCTCTGTCTAGTCCTCTGGTTTGTGGGAGGTGTTCTCAGGGCTAGGACCCACCTCTGGAAGCAGGAATTACTCCATGTACCTGCTTT-CAGATTTCTGTAGAGCAGGTGGGGGTTGAATTGCCCACCTGGCCAAATCCTTACC--CTCGCTTTATCTTCC---CTCCCCAGACAGGG-TTCAGGTCAAGCTCTCTCCTGATC-AGAGCGCTCTGCTGGGCGTGGTAC----------------AAAGTGAATCAggaaccagggttattcagaccatca---------------------c----agagttttgcccttggaagag------------------
i canFam3.chr33                C 0 C 0

a score=20704.000000
s hg38.chr3_KI270935v1_alt        130139 13 +    197351 TGCTG-----ggtgtctc
s panTro4.chr3_GL389630_random     93803 13 +    103936 TGCTG-----ggtgtctc
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199788104 13 + 202140232 TGCTG-----Agtgtctc
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120876831 13 + 123690457 tgctg-----ggtgtctc
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           40064 18 +    111706 tgccgggcgtggtgtctc
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     74847 18 + 192460366 tgccgggcgtggtgtctc
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     72239 18 - 187378091 tgccgggcgtggtgtctc
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   423513 18 -  91754291 tgccgggcgtggtatctc
i chlSab2.chr15                C 0 C 0
s mm10.chr16                    65436557  9 -  98207768 tgcta-----gaaa----
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29072805 13 +  31377067 ggcta-----ggagccac
i canFam3.chr33                C 0 C 0
e calJac3.chr17                   941647 452 -  74750902 I

a score=83379.000000
s hg38.chr3_KI270935v1_alt        130152 31 +    197351 atgtctgtaatcccagcactttgggaggccg
s panTro4.chr3_GL389630_random     93816 31 +    103936 atgtctgtaatcccagcactttgggaggccg
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199788117 31 + 202140232 atgtctgtaatcccagcactttgggaggccg
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120876844 31 + 123690457 atgcctgtaatcccagcactttgggagaccg
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           40082 31 +    111706 atgcctgtaatcccagcactttgggaggccg
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     74865 31 + 192460366 atgcctgtaatcccagcactttgggaggccg
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     72257 31 - 187378091 acgcctataatcccagcactttgggaggccg
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   423531 31 -  91754291 atgcctgtaatcccagcactttgggaggccg
i chlSab2.chr15                C 0 C 0
s mm10.chr16                    65436566 26 -  98207768 ----ctg-aacccaggtcctctggaagaacg
i mm10.chr16                   C 0 I 105
e canFam3.chr33                 29072818  0 +  31377067 C
e calJac3.chr17                   941647 452 -  74750902 I

a score=535277.000000
s hg38.chr3_KI270935v1_alt        130183 231 +    197351 aggccggtggataacctgaggtcaggagttcgcgaccagcctgaccaacatggtgaaaccctgtctctactaaaaatac-aaaattagtcaggcatggtggcgggtgcctgtaatctcagctattcaggaggctgaaacagaagaatcgcttgaacccgggaagcagaggttgcgacgagccgagatcacgtcactgcactccagcctgggcaacaagagcgaaactccgtc
s panTro4.chr3_GL389630_random     93847 231 +    103936 aggccggtggataacctgaggtcgggagttcgcgaccagcctgaccaacatggtgaaaccctgtctctactaaaaatac-aaaattagtcaggcatggtggaggatgcctgtaatctcagctactcaggaggctgaaacagaagaatcgcttgaacccgggaggcagaggttgcgatgagccgagatcacatcactgcactccagcctgggcaacaagagcgaaactccatc
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199788148 231 + 202140232 aggctggcggataacctgaggtccggagttcgagaccagcctgaccaacacggtgaaaccctgtctctactaaaaatac-aaaattagtcaggaatggtggcgggtgcctgtaatctcagctactcaggaggctgaagcagaagaatcgcttgaacccgggaggcagaggctgcgatgagccaagatcgcgtcactgcactccagcctgggcaacaagagcgaaactccatc
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120876875 231 + 123690457 aggccggcggatcacctgaggttgggagttcgagcccagcctgaccaacatggtgaaaccctgtctctactaaaaatac-aaaattagtcaggcatggtggcgggtgcctgtaatctcagctactcaggaggctgaagcaggagaatcgcttgaacccaggaggcagaggttgtgatgagccgagattgcaccattgcactccagcctgggcaacaagagcgaaactccatc
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           40113 232 +    111706 aggccggcagatcacctgaggtcgggagttcaagaccagcctgaccaacatggtgaaaccccgtctctactaaaaatacaaaaattagtcaggcgtagtgacgggcacctgtaatcccagctactcaggaggctgaagcaggagaatagcttgaacccgggaggcagaggttgccgtgagccgagatcacgccactgcactccagcctgggcaacaagagtgaaactccatc
i rheMac3.chrUn_JH291127       C 0 I 27
s macFas5.chr2                     74896 231 + 192460366 aggccggcagatcacctgaggtcgggagttcaagaccagcctgaccaacatggtgaaaccccgtctctactaaaaatgc-aaaattagtcaggcgtagtgacaggcacctgtaatcccagctactcaggaggctgaagcaggagaatcgcttgaacccgggaggcagaggttgccgtgagccgagatcacgccattgcactccagcctgggcaacaagagtgaaactccatc
i macFas5.chr2                 C 0 I 31
s papAnu2.chr2                     72288 231 - 187378091 aggccggcagatcacctgaggtcaggagttcaagaccagcctgaccaacatggtgaaaccctgtctctactaaaaatgc-aaaattagtcaggcatggtgatgggcacctgtaatcccagctactcaggaggctgaagcaggagaatcacttgaacccaggaggcagaggttgccgtgagctgagatcatgccactgcactccagcctgggcaacaagagtgaaactccatc
i papAnu2.chr2                 C 0 I 32
s chlSab2.chr15                   423562 227 -  91754291 aggccagcagatcacctgaggtcgggagttcaagaccaggctgaccaacatggtgaaactctgtctctactaaaaatgc-aaaatt----aggcatggtgacgggcacctgtaatcccagctactcaggaggctgaagcaggagaatcgcttgaactcgggaggcagaggttgccgtgagctgagatcatgccactgcactccagcctgggcaacaagagtgaaaccccgtc
i chlSab2.chr15                C 0 I 32
e mm10.chr16                    65436592 105 -  98207768 I
e canFam3.chr33                 29072818   0 +  31377067 C
e calJac3.chr17                   941647 452 -  74750902 I

a score=1241.000000
s hg38.chr3_KI270935v1_alt        130414 12 +    197351 Aa--------------------------------cacacacaca
s panTro4.chr3_GL389630_random     94078 44 +    103936 AAAacacacacacacacacacgcacgcacacacgcacacacaca
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199788379 44 + 202140232 AAAacacacacacacacacacacacacacacacacacacacaca
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120877106 25 + 123690457 aaaaaacaaaaaaaaa-------------------acaaaataa
i nomLeu3.chr11                C 0 C 0
e rheMac3.chrUn_JH291127           40345 27 +    111706 I
e mm10.chr16                    65436592 105 -  98207768 I
e canFam3.chr33                 29072818  0 +  31377067 C
e calJac3.chr17                   941647 452 -  74750902 I
e chlSab2.chr15                   423789 32 -  91754291 I
e macFas5.chr2                     75127 31 + 192460366 I
e papAnu2.chr2                     72519 32 - 187378091 I

a score=-623.000000
s hg38.chr3_KI270935v1_alt        130426 3 +    197351 -cac
s panTro4.chr3_GL389630_random     94122 3 +    103936 -cac
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199788423 3 + 202140232 -cac
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120877131 3 + 123690457 -aac
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           40372 3 +    111706 aaa-
i rheMac3.chrUn_JH291127       I 27 C 0
e mm10.chr16                    65436592 105 -  98207768 I
e canFam3.chr33                 29072818 0 +  31377067 C
e calJac3.chr17                   941647 452 -  74750902 I
e chlSab2.chr15                   423789 32 -  91754291 I
e macFas5.chr2                     75127 31 + 192460366 I
e papAnu2.chr2                     72519 32 - 187378091 I

a score=22292.000000
s hg38.chr3_KI270935v1_alt        130429 14 +    197351 acgcacaAAACCTG
s panTro4.chr3_GL389630_random     94125 14 +    103936 atgcacaAAACCTG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199788426 14 + 202140232 acacacaAAACCTG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120877134 14 + 123690457 aaaaccaaaacatg
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           40375 14 +    111706 acgaaaaaaacctg
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     75158 14 + 192460366 acgaaaaaaacctg
i macFas5.chr2                 I 31 C 0
s papAnu2.chr2                     72551 14 - 187378091 aagaaaaaaacctg
i papAnu2.chr2                 I 32 C 0
s chlSab2.chr15                   423821 14 -  91754291 aagaaaAAAAcctg
i chlSab2.chr15                I 32 C 0
s mm10.chr16                    65436697 14 -  98207768 aagctgaaacccat
i mm10.chr16                   I 105 C 0
e canFam3.chr33                 29072818  0 +  31377067 C
e calJac3.chr17                   941647 452 -  74750902 I

a score=1486859.000000
s hg38.chr3_KI270935v1_alt        130443 561 +    197351 GAgggtcacatctaaagggacattgcatttgtccagaaatagagagggagtgaaacctcttcacgggtctgtttctcggagccctgccatttccatttcatagtTGCTTCACACATTCATTCAGtcagtcatttaacaaacatttattgagc------taagtggctggcactgttctgggtggtgaggatacagtcatgaatgaataatt-aaaaagatacctgtgaaaattataaaatatg-------ttgagtaattataaatgctaaggagaaaaaaataaagcagggaaggcaaacatgaagtgtgggtgaatgtgacattttagacagggcggccaagagaggcctcaccaaggaggggacattg---gaatgaagacgtaaagaaggtgaggggcaagcgtgtggctgtccagggaagg-aagggtattccaggcaagagaacagcacgtgtgaagcctgg-gagctgagcgca----cctagcgtgtttgaagaacacagaggagcctgcggggctggagtgcagggagctgggaaggggtccagcgctag-gaTGGAGTGGAGGGGGCTGGGAAGG
s panTro4.chr3_GL389630_random     94139 561 +    103936 GAgggtcacatctaaacggacattgcttttgtccagaaatagagagggagtgaaacctcttcacgggtctgtttctcggagccctgccatttccatttcatagtTGCTTCACGCATTCATTCAGtcagtcatttaacaaacatttattgagc------taagtggctggcactgttctgggtggtgaggatacagtcatgaatgaataata-aaaaagatacctgtgaaaattataaaatatg-------ttgagtaattataaatgctaaggagaaaaaaataaagcagggaaggcaaacacgaagtgtgggtgaatgtgacattttagacagggcggccaagagaggcctcactgaggaggggacattg---gaatgaagacataaaggaggagaggggcaagcgtgtggctgtccagcgaagg-aagggtattccaggcaagagaacagcacgtgtgaagcctgg-gagctgagcgca----cctagcgtgtttgaagaacacagaggagcctgcggggctggagtgcagggagctgggaaggcgtccagcgctag-gaTGGAGTGGAGGGGGCTGGGAAGG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199788440 561 + 202140232 GAgggtcacatctaaacggacattacatttgtccagaaatagagagggagtgaaacctcttcacgggtctgtttctcggagccctgccatttccatttcatagtTGCTTCACGCATTCGTTCAGtcagtcatttaacaaatatttattgagc------taagtggctggcactgttctgggtggtgaggatacagtcatgaatgaataata-aaaaagatacctgtgaaaattataaaatagg-------ttgagtaattataaatgctaaggagaaaaaaataaagcagagaaggcaaacacgaagtgtgggtgaatgtgacattttagacagggcggccaagagaggcttcgccgaggagggttcattg---gaatgaagacgtaaaggaggtgaggggcaagcgtgtggctgtccggggaagg-aagggtattccaggcaagagaacagcatgtgtgaagcctgg-gagctgagcaca----cctggcgtgtttgaagaacacagaggagcctgcggggctggagtggagggggctgggaagTCGTCCAGCACTAG-GATTGAGTGGAGGGGGCTGGGAAGG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120877148 557 + 123690457 gaggatcacatctaaacggatattgcatttgtccagaaatagagagggagtgaaacctctccacgggtctgtttctcggagccctgccatttccatttcatagtTGCGTCACGCATTCATTCAGtcagtcatttaacaaatatttattgagc------taagtggctggcactgttctgggtgatgaggatacagtcatgaatgaataata-aaaaagatacctgtgaaaattataaaatatg-------ttgagtaattataaatgctaaggagaaaa----aaggcagggaaggcaaacaggaagtgtgggtgaatgtgacattttggacagggtggccaagaaaggcattgccaaggaggggacattg---gaatgaagacataaaggaggtgaggggcaagcgtgtggctgtccagggaatg-aagggtattccaggcaagagaacagcacgtgtgaagcctgg-gagctgagcaca----cctggtgtgtctgaagaacacagaggagcctacagggctggagtgtagggagctgggaaggggTCCAACACCAG-GATGGAGTGCAGGGAGCTGGGAAGG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           40389 564 +    111706 gagagtcacatcgaaacgcacatcacatttgtccagaaatagagagggagtgaaaccttttcacggggctgtttctcggagccctgccatttccatttcatAGTTGGTTCACACATCCATTCAATCTGtcatttaacaaatatttattgagc------taagtggctggcattgctctgggtagtgaggatacagtcatgaatgaataata-aaaaagatacctgtgaaaattataaaatatg-------ttgagtaattataaatgctaaggagaaaaaaataaagcagggaaggcaaacaggaagtgtgggtgaatgtgccattttagacagggcggccaagagagcccttgctgaggagggga-attg---gaataaagacataaaggaggtgaggggcaagcgtgtggctgtccagggaaggaaaaggcattc-aggcaagagaacagcacgtgtgaagcctgg-gagctgagcgcacatgcctggtgtgtttgaggaacacagaggagcctgcggggctggagtggagggaggtgggaaggggtccagcagtag-gatggagtgcagggagctgggaagg
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     75172 561 + 192460366 gagagtcacatcgaaacgcacatcacatttgtccagaaatagagagggagtgaaaccttttcacggggctgtttctcggagccctgccatttccatttcatAGTTGGTTCACACATCCATTCAATCTGtcatttaacaaatatttattgagc------taagtggctggcattgctctgggtagtgaggatacagtcatgaatgaataata-aaaaagatacctgtgaaaattataaa--atg-------ttgagtaattataaatgctaaggagaaaaaaataaagaaggaaaggcaaacaggaagtgtgggtgaatgtgccattttagacagggcggccaagagagccctcgctgaggagggga-actg---gaataaagacataaaggaggtgaggggcaagcgtgtggctgtccagggaagg-aaaggcattc-aggcaagagaacagcatgtgtgaagcctgg-gagctgagcgcacatgcctggtgtgtttgaggaacacagaggagcctgcggggctggagtggagggaggtgggaaggcgtccagcagtag-gatggagtgcagggagctgggaagg
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     72565 564 - 187378091 gaGGGTCACATCGAAACGCACATCACATTTGtccagaaagagagagggagtgaAACCTTTTCACAGGTCTGTTTCTCGGAGCCCTGCCATTTCCATTTCATAGTTGGTTCACACATCCATTCAATctgtcatttaacaaatatttattgagc------taaGTGGCTGGCATTGCTCTGGGTAGTGAGGATACAGtcatgaatgaataata-aaaaagatacctgtgaaaattataaaatatg-------ttgaGTAATTATAaatgctaaggagaaaaaaataaagcagggaaggcAAACAGGAAGTGTGGGTGAATGTGCCATTTTAGACAGGGCGGCCAAGAGAGCCCTCGCTGAGGAGGGGACATTG---GAATAAAGACATAAAGAAGGTGAGGGGCAAGTATGTGGCTGTCCAGGGAAGG-AAAGGCATTC-AGGCAAGAGAACAGCACGTGTGAAGCCTGG-GAGCTGAGCGCACATGCCTGGTGTGTTTGGGGAACACAGAGGACCCTGCggggctggagtggagggaggtgggaaggggtccagcagtag-gatggagtggagggaggtgggaagg
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   423835 565 -  91754291 gagggtcacatctaaacggacatcacatttgtccagaaatagagagggagtgaaaccttttcactggtctgtttcttggagccctgccatttccatttcatAGTTGGTTCACACATCCATTCAGtcagtcatttaacaaatatttattgagc------taagtggctggcattgctctgggtagtaaggatacagtcatgaatgaataata-aaaaagatacctgtgaaaattataaaatatg-------ttgagtaattataaatgctaaggagaaaaaaataaagcagggaaggcaaacaggaagtgtgggtgaatgtgccattttagacagggcagcccagagagccctcactgaggaggggacattg---gaataaagacataaaggaggtgaggggcaagcgtgttgctgtccagggaagg-aaaggcattctaggcaagagaacagcacgtgtgaagcctgg-gagctgagcgcgcatgcctggtgtgtttgaggaacacagaggagcctgccgggctagagtggagggagctgggaaggggtCCAGCACTAG-GATGGAGTGGAGGGAGCTGGGAAAG
i chlSab2.chr15                C 0 C 0
s mm10.chr16                    65436711 457 -  98207768 gagtgtggtatgtagatggacattccatcttcccagaaagagag-----gtcaagctctctcaaagctccgtatcttggaagcctattatttccatcccattgcatattaaTAAGTTTCATCAAT--------------AGATGTATTGAGCATGTGATATACAGATGGCCCTAATCT-----------CTATAGCAATGAACAAGTGATAGAAAAAGAGGCTTAAGGGAATTATAAATTATAAGATGCTCTTACTAGTTAGAAATGCTA-----AAAAAAAAAAATCAGGAAAG--------GGGGTGTGAATAAACGTGAAATAAAAGACATGGCAGTCTGGGG-------GCTTAAGAAGGCA-------------------------------GTGACCTGCCTGTGGCTGGCTGTGGAGAG-AG-------CCTTGTAAGAGAAAGGCACATGCAGAGTT--------------------TCCAGTGAGCCCAAAGAAGCCAG---------------TGGAGTGGAGGGAGGGGAGGAGAAG----GGGGTAGTGGCAGAGTGCATAGGGCAGTGAAGG
i mm10.chr16                   C 0 I 35
s canFam3.chr33                 29072818 514 +  31377067 gagggtgatctccagatgggcattgcatttgccaggaaatagag-------gAA-------CACGG----------TGGA--CATGCAATTTCCATTTCCCTGTT--------CAGTCATTCGGtcagtcgctgaac--acacgcactgagcgcctaccgtatggctggtagggctctaggtagtgaggacacagcagtaaac-agtactg-agaaggatacctatggaaactaggaaatatg-------ctagatagttataaatgctgaggagaaaaaaacaaagcagggacggcaaataggaagtatgggtaaatgtgagat-ttgggcaggccggccaagaagggcattgcggaggaggcgactctgcttgcacgcagccttggaggaggagag-ggtgagcctggggctgcctgg---agg-aagggtgtc--agggcagagagggccatggatggagcctggagtgaggagcgag----cccgctgtggttggtgaacacggagaagccaggagggctggagtggagggagcagggcaggga------------gaaggagagg-gagagttggagag-
i canFam3.chr33                C 0 C 0
e calJac3.chr17                   941647 452 -  74750902 I

a score=33653.000000
s hg38.chr3_KI270935v1_alt        131004 15 +    197351 CATCCAGCGCTAGGA
s panTro4.chr3_GL389630_random     94700 15 +    103936 CGTCCAGCACTAGGA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199789001 15 + 202140232 GGTCCAGCACTAGGA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120877705 15 + 123690457 GGTCCAGCACTAGGA
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           40953 15 +    111706 ggtccagCACTAGGA
i rheMac3.chrUn_JH291127       C 0 I 48
s macFas5.chr2                     75733 15 + 192460366 ggtcCAGCACTAGGA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     73129 15 - 187378091 ggtCCAGCACTAGGA
i papAnu2.chr2                 C 0 I 135
s chlSab2.chr15                   424400 15 -  91754291 GGTCCAGCACTAGGA
i chlSab2.chr15                C 0 C 0
s canFam3.chr33                 29073332 14 +  31377067 cttctggggTCAGG-
i canFam3.chr33                C 0 C 0
e mm10.chr16                    65437168 35 -  98207768 I
e calJac3.chr17                   941647 452 -  74750902 I

a score=3820.000000
s hg38.chr3_KI270935v1_alt        131019 4 +    197351 TGGA
s panTro4.chr3_GL389630_random     94715 4 +    103936 TGGA
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199789016 4 + 202140232 TGGA
i ponAbe2.chr3                 C 0 I 1
s nomLeu3.chr11                120877720 4 + 123690457 TGGA
i nomLeu3.chr11                C 0 I 1
s chlSab2.chr15                   424415 4 -  91754291 TGGA
i chlSab2.chr15                C 0 I 1
e rheMac3.chrUn_JH291127           40968 48 +    111706 I
e mm10.chr16                    65437168 35 -  98207768 I
e canFam3.chr33                 29073346 0 +  31377067 C
e calJac3.chr17                   941647 452 -  74750902 I
e macFas5.chr2                     75748 0 + 192460366 C
e papAnu2.chr2                     73144 135 - 187378091 I

a score=3054.000000
s hg38.chr3_KI270935v1_alt        131023 5 +    197351 TGGAG
s panTro4.chr3_GL389630_random     94719 5 +    103936 TGGAG
i panTro4.chr3_GL389630_random C 0 I 300
s ponAbe2.chr3                 199789021 5 + 202140232 TGGAG
i ponAbe2.chr3                 I 1 C 0
s nomLeu3.chr11                120877725 5 + 123690457 TGCAG
i nomLeu3.chr11                I 1 C 0
s macFas5.chr2                     75748 4 + 192460366 -GAAG
i macFas5.chr2                 C 0 C 0
e rheMac3.chrUn_JH291127           40968 48 +    111706 I
e mm10.chr16                    65437168 35 -  98207768 I
e canFam3.chr33                 29073346 0 +  31377067 C
e calJac3.chr17                   941647 452 -  74750902 I
e chlSab2.chr15                   424419 1 -  91754291 I
e papAnu2.chr2                     73144 135 - 187378091 I

a score=10388.000000
s hg38.chr3_KI270935v1_alt        131028 23 +    197351 GGGGCTGGGAAGGGGTCCAGCGC
s panTro4.chr3_GL389630_random     95024 23 +    103936 GGGGCTGGGAAGGCGTCCAGCGC
i panTro4.chr3_GL389630_random I 300 C 0
s ponAbe2.chr3                 199789026 23 + 202140232 GGGGCTGGGAAGGGGTCCAGCAC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120877730 23 + 123690457 GGAGCTGGGAAGGGGTCCAGCAC
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     75752 11 + 192460366 AGCTCTGAGAA------------
i macFas5.chr2                 C 0 C 0
e rheMac3.chrUn_JH291127           40968 48 +    111706 I
e mm10.chr16                    65437168 35 -  98207768 I
e canFam3.chr33                 29073346  0 +  31377067 C
e calJac3.chr17                   941647 452 -  74750902 I
e chlSab2.chr15                   424419  1 -  91754291 I
e papAnu2.chr2                     73144 135 - 187378091 I

a score=15511.000000
s hg38.chr3_KI270935v1_alt        131051 47 +    197351 TAGGATGGAGTGGAGGGG-------------------------------------------GCTGGGAAGGCGTCCAGCGCTAGTATGGA
s panTro4.chr3_GL389630_random     95047 47 +    103936 TAGGATGGAGTGGAGGGA-------------------------------------------GCTGGGAAGGCGTCCAGCGCTAGGATGGA
i panTro4.chr3_GL389630_random C 0 I 421
s ponAbe2.chr3                 199789049 47 + 202140232 TAGGATGGAGTGCAGGGG-------------------------------------------GCTGGGAAGGCGTCCAGCACTAGGATGGA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120877753 47 + 123690457 TAGGATGGAGTGGAGGGA-------------------------------------------GCTGGGAAGGGGTCCAGCACTAGGATGGA
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     75763 29 + 192460366 ----ATG------------------------------------------------------GCGGGGGGCAGACTGAGCG---GGCTGGA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     73279 87 - 187378091 tAGGATGGAgtggagggaggtgggaagggggtCCAGCACTAGGAGAAGAGCTCTGAGAAATGCGGGGGGCAGACTGAGCG---GGCTAGA
i papAnu2.chr2                 I 135 C 0
s canFam3.chr33                 29073346 20 +  31377067 ---------TTGGAAAGG-------------------------------------------GCTGTGAATGT------------------
i canFam3.chr33                C 0 C 0
e rheMac3.chrUn_JH291127           40968 48 +    111706 I
e mm10.chr16                    65437168 35 -  98207768 I
e calJac3.chr17                   941647 452 -  74750902 I
e chlSab2.chr15                   424419  1 -  91754291 I

a score=4230.000000
s hg38.chr3_KI270935v1_alt        131098 6 +    197351 GTGAAG
s ponAbe2.chr3                 199789096 6 + 202140232 GTGGAG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120877800 6 + 123690457 GTGGAG
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     75792 6 + 192460366 GTGCAG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     73366 6 - 187378091 GTGCAG
i papAnu2.chr2                 C 0 C 0
e rheMac3.chrUn_JH291127           40968 48 +    111706 I
e mm10.chr16                    65437168 35 -  98207768 I
e canFam3.chr33                 29073366 0 +  31377067 C
e calJac3.chr17                   941647 452 -  74750902 I
e chlSab2.chr15                   424419 1 -  91754291 I
e panTro4.chr3_GL389630_random     95094 421 +    103936 I

a score=15176.000000
s hg38.chr3_KI270935v1_alt        131104 32 +    197351 GGGGCTGGGAAGGCATCCAGCGCTAGGATGGA
s panTro4.chr3_GL389630_random     95515 32 +    103936 GGGGCTGGGAAGGCGTCCAGCGCTAGGATGGA
i panTro4.chr3_GL389630_random I 421 C 0
s ponAbe2.chr3                 199789102 32 + 202140232 GGGGCTGGGAAGGCGTCCAGCACTAGGATGGA
i ponAbe2.chr3                 C 0 I 267
s nomLeu3.chr11                120877806 32 + 123690457 GGGGCTGGGAAGGGGTCCAGCACTAGGATGGA
i nomLeu3.chr11                C 0 I 1408
s macFas5.chr2                     75798  4 + 192460366 GGAG----------------------------
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     73372 32 - 187378091 GGAGCTGGGAAGGGGTCCAGCACTAGGAGAAG
i papAnu2.chr2                 C 0 C 0
s canFam3.chr33                 29073366  5 +  31377067 -----------------CATCA----------
i canFam3.chr33                C 0 C 0
e rheMac3.chrUn_JH291127           40968 48 +    111706 I
e mm10.chr16                    65437168 35 -  98207768 I
e calJac3.chr17                   941647 452 -  74750902 I
e chlSab2.chr15                   424419  1 -  91754291 I

a score=398.000000
s hg38.chr3_KI270935v1_alt        131136 1 +    197351 C
s panTro4.chr3_GL389630_random     95547 1 +    103936 T
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199789401 1 + 202140232 T
i ponAbe2.chr3                 I 267 C 0
s nomLeu3.chr11                120879246 1 + 123690457 T
i nomLeu3.chr11                I 1408 C 0
s chlSab2.chr15                   424420 1 -  91754291 T
i chlSab2.chr15                I 1 C 0
s canFam3.chr33                 29073371 1 +  31377067 C
i canFam3.chr33                C 0 C 0
e rheMac3.chrUn_JH291127           40968 48 +    111706 I
e mm10.chr16                    65437168 35 -  98207768 I
e calJac3.chr17                   941647 452 -  74750902 I
e macFas5.chr2                     75802 0 + 192460366 C
e papAnu2.chr2                     73404 0 - 187378091 C

a score=4019.000000
s hg38.chr3_KI270935v1_alt        131137 2 +    197351 GG
s panTro4.chr3_GL389630_random     95548 2 +    103936 GG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199789402 2 + 202140232 GG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120879247 2 + 123690457 GG
i nomLeu3.chr11                C 0 C 0
s papAnu2.chr2                     73404 2 - 187378091 AG
i papAnu2.chr2                 C 0 I 47
s chlSab2.chr15                   424421 2 -  91754291 GG
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   942099 2 -  74750902 gg
i calJac3.chr17                I 452 C 0
s canFam3.chr33                 29073372 2 +  31377067 AG
i canFam3.chr33                C 0 C 0
e rheMac3.chrUn_JH291127           40968 48 +    111706 I
e mm10.chr16                    65437168 35 -  98207768 I
e macFas5.chr2                     75802 0 + 192460366 C

a score=3276.000000
s hg38.chr3_KI270935v1_alt        131139 1 +    197351 A
s panTro4.chr3_GL389630_random     95550 1 +    103936 A
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199789404 1 + 202140232 A
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120879249 1 + 123690457 A
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           41016 1 +    111706 A
i rheMac3.chrUn_JH291127       I 48 C 0
s papAnu2.chr2                     73453 1 - 187378091 a
i papAnu2.chr2                 I 47 C 0
s chlSab2.chr15                   424423 1 -  91754291 A
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   942101 1 -  74750902 a
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29073374 1 +  31377067 A
i canFam3.chr33                C 0 C 0
e mm10.chr16                    65437168 35 -  98207768 I
e macFas5.chr2                     75802 0 + 192460366 C

a score=19642.000000
s hg38.chr3_KI270935v1_alt        131140 7 +    197351 GGGGGCT
s panTro4.chr3_GL389630_random     95551 7 +    103936 GGGGGCT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199789405 7 + 202140232 GGAGGCT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120879250 7 + 123690457 GGGGGCT
i nomLeu3.chr11                C 0 I 6469
s rheMac3.chrUn_JH291127           41017 7 +    111706 GGGAGCT
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     75802 2 + 192460366 -----CT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     73454 7 - 187378091 gggaggt
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   424424 7 -  91754291 GGGAGCT
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   942102 7 -  74750902 gggagca
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65437203 7 -  98207768 GGGAGCT
i mm10.chr16                   I 35 C 0
s canFam3.chr33                 29073375 7 +  31377067 GTGAGCC
i canFam3.chr33                C 0 C 0

a score=2091137.000000
s hg38.chr3_KI270935v1_alt        131147 691 +    197351 GGGAAGGCGTCCAGCACTAGGAGAAGAGCTCTGAGAAG-------------CTGAACTGGGCCGAAGGCCACTGCAAGGATGGAGAGAGCCAGGGAAGTCTCTGAAGGGTTTGAGCAGAGGAATGCCAGGAGTGGAAGAATCTGCTCAGTGAATGCAGATGCACAGGGAAAAGCAGGGTCAGGCAAGGGCAGCTCCTCATCTGCT-CCCGA-CTCTGAAAAGGCCTCCCCAG---GC----CTCGGGCCACTTACTGAGGGTGGCGTTCGCCTGCTCGTAGTTTTTACTGACTTCCCTCGTGTGAAGTCCGATGCTTGCGTTGCGCAGGGCCAGGGTGTCATAGATGCATGAGCTATCTCCGTCACA-GTTGGAGATCAAATGTTCAGCCCAGGAGCTGTTTTTTTGCAGTTGTGAGTAGAAAACAGGGGTGAAGTTGGAAGGCAGCTGGTCATTCCTCTTGCCAAGGAGGCCTGTCCCGTTGATCTGCCCTGTAACACACAGAGCGCGG---TG------GTACCAGGCATGGCACTCAGCCTTATTCCATCTGTGTCCACCTCTACCCCTCACTTTAGATGGCTTGGAGCG-----GG-GCGG--TGGGAGT--GCAGGGCCAGAGCGGTTTCCAGCTTCTGAGTCTAGAAACACCTGCTGCAGTGAGAGAGGACACTCCACGTCCCCCATTCTCTCCTCCAGGTAGAGAGAGGCAGGTGGGCTGGTGGTG
s panTro4.chr3_GL389630_random     95558 691 +    103936 GGGAAGGCGTCCAGCACTAGGAGAAGAGCTCTGAGAAG-------------CTGAACTGGGCCGAAGGCCACTGCAAGGATGGAGAGAGCCAGGAAAGTCTCTGAAGGGTTTGAGCAGAGGAATGCCAGGAGTGGAAGAATCTGCTCCGTGAATGCAGGTGCACAGGGAAAAGCAGGGTCAGGCAAGGGCAACTCCTCATCTGCT-CCCGA-CTCTGAAAAGGCCTTCCCGG---GC----CTCGGGCCACTTACTGAGGGTGGCGTTCGCCTGCTCGTAGTTTTTACTGACTTCCCTCGTGTGAAGTCCGATGCTTGCGTTGCGCAGGGCCAGGGTGTCATAGATGCATGAGCTGTCTCCGTCACA-GTTGGAGATCAAATGTTCAGCCCAGGAGCTGTTTTTTTGCAGTTGTGAGTAGAAAACAGGGGTGAAGTTGGAAGGCAGCTGGTCATTCCTCTTGCCAAGGAGGCCTGTCCCATTGATCTGCCCTGTAACACACAGAGCGTGG---TG------GTACCAGGCATGGCACTCAACCTTATTCCATCTGTGTCCACCTCTACCCCTCACTTTATATGGCTTGGAGCA-----GG-GTGG--TGGGAGT--GCAGGGCCAGAGCGGTTTCCAGCTTCTGAGTCTAGAAACACCTGCTGCAGTGAGAGAGGACACTCCACGTCCCCCATTCTCTCCTCCAGGTAGAGAGAGGCAGGTGGGCTGGTGGTG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199789412 691 + 202140232 GGGAAGGCGTCCAGCACTAGGAGAAGAGCTCTGAGAAG-------------CTGAACTGGGCCGAAGGCCACTGCAAGGATGGAGAGAGCCGGGAAAGTCACTGAAGGGTTTGGGCAGAGGAATAACAGGAGCGAAAGAATCTGCTCAGTGAAAGCAGATGCACAGGGAAAAGCAGGGCCAGGCAAGGGCAGCTCCTCATCTGCT-CCCGA-CTCTGAAAAGGCCCCCCGGG---GC----CTCGGGCCACTTACTGAGGGTGGCGTTCACCTGCTCGTATTTTTTACTGACTTCCCTCGTGTGACGTCCGATGCTTGCGTTGCGCAGGGCCAGGGTGTCATAGATGCATGAGCTGTCTCTGTCACA-GCTGGAGATCAAATCTTCAGCCCAGGAGCTGTTTTTTTGCAGTTGTGAGTAGAAAACAGGGGTGAAGTTGGAAGGCAGCTGGTCATTCCTCTTGCCAAGGAGGCCTGTCCCGTTGATCTGCCCTGTAACACACAGAGCGCGA---TG------GCACCAGGCATGGCACTCAGCCTTATTCCATTTGTGTCCACCTCTACCCCTCACTTTATATGGCTTGGAGCG-----GG-GCGG--TGGGAGT--GCAGGGCCAGAGCGGTTTCCAGCTTCTGAGTCTGGAAATGCCTGCTGCAGGGAGAGAGGACACTCCACATCCCCCATTCTCTCCTCCAGGTCGAGAGAGGCAGGTGGGCTGGTGGTG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120885726 672 + 123690457 GGGAAGGGGTCCAGCACTAGGAGAAGAACTCTGAGAAG-------------CTGAACCAGGCCAAAGGCCACTGCAAGGAT-GAGACAGCCAGGGAAGTCACTGAAGGGTCTGAGCAGAGGAATAACAGGAGTGGAAGAATCTGCTCAGTGAATGCAGATATACAGGGTAAAGCAGAGTCAGGCAAGGGCAGCTCCTCATCTGCT-CCCAA-GTCTGAAAAGCCCTCCCGGG---GC----CTCGGGCCACTTACTGATGGTGGCATTCACCTGCTCGTAGGTTTTACTGACTGCCCTCGTGTGAAGTCCGATGCTTGCGTTGCGCAGGGCCAGAGTGTCATAGATGCATGAGCTGTCTCCGTCAC-------AGATCAAAGCTTCAGCCCAGGAGCTGTTTTTTTGCAGTTGTGAGTAGAAAACAGGGGTGAAGTTGGAAGGCAGCTGGTCATTCCTATTGCCAAGGAGGCCTGTGCCGTTGATCTGCCCTGTAACACACAGAGCACGA---TG------GTACCAGGCGTGGCACTCAGCCTTATTCCACCTGTGTCCGCCTCTACCCCTCACTTTATATGGCTTGGGGTG-----GG-GCGG--TGGGAGT--GCAGGGCCAGAGCGGTTTCCAGCTTCTGAG----------CCTGCTGCAGTGAGAGAGGACACTCCACGTCCTCCATTCTCTCCTCCAGGTAGAGAGAGGCAGGTGGGCTGGTG--G
i nomLeu3.chr11                I 6469 C 0
s rheMac3.chrUn_JH291127           41024 687 +    111706 GGGAAGGGGTCCAGCACTAGGAGAAGAGCTCTGAGAAG-------------CCGAACTGGGCCAAAGGCCCCTGCTAGGATGGAGAGAGCGGGGGAAGCCACTGGAGGGTCTGAGCAGAGGAATAACAGGAGCAAAAGAATCTGTTCAGTGAATGCAGATGCACAGGGTAAAGCAGGGTCAGGGAAGGGCAGCTCCTCATCTGCT-TCTG--CTCTGAAAAGGCCTCCCAGG---GG----CTCGGGCCACTTACTGAGGGTGGCGTTCACCTGCTTGTAGGTTTTGCTGACGGCCCTCGTGTGAAGTCCGATGCTTGTGTTGCGCAGGGCCAGGGTGTCATAGATGCATGAGCTGTCTCCATTACA-GCTGGAGATCACATCTTCAGCCCAGGAGCTG---TTTTGCAGTTGTGAGTAGAAAACAGGGGTGAAGTTGGAAGGCAGCTGGTCATTCCTCTTGCCAAGGAGGCCTGTCCCGTTGATCTGCCCTGTAACACACAGAGCGTGA---TG------GTACCGGGCATGGCACTCAGCCTTATTCCTTCTGTGTCCACCCCTACCCCTCACTTTATGTGGCCTGGAGCG-----GG-GCGG--TGGGAGT--GCAGGGCAACAGCGGTTACTAGCTTCTGAGTCTGGAAACGCCTGCTGCGGTGAGAGAGGACGCTCGACCTACCCCATTCTCTCCTCCAGCTAGAGAAAGGCAGGTGCACTGGTCCTG
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     75804 687 + 192460366 GGGAAGGGGTCCAGCACTAGGAGAAGAGCTCTGAGAAG-------------CTGAACCGGGCCAAAGGCCCCTGCTAGGATGGAGAGAGCGGgggaagccactggagggtctgagcagaggaataacaggaGCAAAAGAATCTGTTCAGTGAATGCAGATGCACAGGGTAAAGCAGGGTCAGGGAAGGGCAGCTCCTCATCTGCT-TCTT--CTCTGAAAAGGCCTCCCAGG---GG----CTTGGGCCACTTACTGAGGGTGGCATTCACCTGCTTGTAGGTTTTGCTGATGGCCCTCGTGTGAAGTCCGATGCTTGCGTTGCGCAGGGCCAGGGTGTCATAGATGCATGAGCTGTCTCCATTACA-GCTGGAGATCACATCTTCAGCCCAGGAGCTG---TTTTGCAGTTGTGAGTAGAAAACAGGGGTGAAGTTGGAAGGCAGCTGGTCATTCCTCTTGCCAAGAAGGCCTGTCCCGTTGATCTGCCCTGTAACACACAGAGCGTGA---TG------GTACCGGGCATGGCACTCAGCCTTATTCCTTCTGTGTCCACCCCTACCCCTCACTTTATGTGGCCTGGAGCA-----GG-GCGG--TGGGAGT--GCAGGGCGACAGCGGTTTCTAGCTTCTGAGTCTGGAAACGCCTGCTGCAGTGAGAGAGGACGCTCGACCTACCCCATTCTCTCCTCCAGCTAGAGAAAGGCAGGTGCACTGGTCCTG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     73461 688 - 187378091 gggaaggggtCCAGCACTAGGAGAAGAGCTCTGAGAAG-------------CCGAACCGGGCCAAAGGCCACTGCTAAGATGGAGACAGCGggggaagccactggagggtcTGAGCAGAGGAATAACAGGAGCAAAAGAATCTGTTCAGTGAATGCAGATGCACAGGGTGAAGCAGGGTCAGGGAAGGGCAGCTCCTCATCTGCT-TCTGA-CTCTGAAAAGGCCTCCCCGG---GG----CTCGGGCCACTTACTGAGGGTGGCGTTCACCTGCTTGTAGGTTTTGCTGACAGCCCTCGTGTGAAGTCCGATGCTTGCGTTGCGCAGGGCCAGGGTGTCATAGATGCATGAGCTGTCTCCATTACA-GCTGGAGATCATATCTTCAGCCCAGGAGCTG---TTTTGCAGTTGTGAGTAGAAAACAGGGGTGAAGTTGGAAGGCAGCTGGTCATTCCTCTTGCCAAGGAGGCCTGTCCCGTTGATCTGCCCTGTAACACACAGAGCGTGA---TG------GTACCGGGCATGGCACTCAGCCTTATTCCTTCTGTGTCCACCCCTACCCCTCACTTTATGTGGCCTGGAGCG-----GG-GCGG--TGGGAGT--GCAGGGTGACAGCGGTTTCTAGCTTCTGAGTCTGGAAACGTCTGCTGCGGTGAGAGAGGACGCTCGACCTACCCCATTCTCTCCTCCAGCTAGAGAAAGGCAGGTGCACTGGTCCTg
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   424431 689 -  91754291 GGGAAGGGGTCCAGCACTAGGAGAAGAGCTCTGAGAAG-------------CTGAACCAGGCCAAAGGCCACTGCTAGGATGGAGAGAGCGGGGGAAGCCACTGGAGGGTCTGAGCAGAGGAATAACAGGAGCAAAAGAATCTCTTCAGTGAATGCAGATGCACAGGGTAAAGCAGGGTCAGGGAAGGGCAGCTCCTCATCTGCT-TCTG--CTCTGAAAAGGCCTCCCGGG---GG----CTCAGGCCACTTACTGAGGGTGGCGTTCACCTGCTTGTAGGTTTTGCTGACGGCCCTCGTGTGAAGTCCGATGCTTGCGTTGCGCAGGGCCAGGGTGTCATAGATGCATGAGCTGTCTCCATTACA-GCTGGAGATCAAATCTTCAGCCCATGAGCTGTTTTTTTGCAGTTGTGAGTAGAAAACAGGGGTGAAGTTGGAAGGCAGCTGGTCATTCCTCTTGCCAAGGAGGCCTGTCCCGTTGATCTGCCCTGTAACACACAGAGCGTGA---TG------GTACCGGGCATGGCACTCAGCCTTATTCCTTCTGTGTCCACCCCTACCCCTCACTTTATGTGGCTTGGAGCA------G-GCCG--TGGGAGT--GCAGGGCCACAGCGGTTTCTAGCTTCTGAGTCTGGAAACGCCTGCTGCAGTGACAGAGGACACTCGACCTACCCCATTCTCTCCTCCAGCTAGAGAAAGGCAGGTGCGCTGGTCCTG
i chlSab2.chr15                C 0 I 9
s calJac3.chr17                   942109 668 -  74750902 gggagcgggtatagcat---gagaagacctctaagaagcggcgggaccagactgaac-aggcctaaggccacggtaaggatggagagagcc-gggaagtcagtggaggatttgagcagagg--------------aagaatctgctccgTGAATGCAGTTGCGCAGGGTCCAGCAGGGTCACGGAA-GGCTGCTCCTCA-CAGCT-CCCAG-CTCTGAAAAGGCCTCCTGGG---GC----GTTGGGCCACTTACTGAAGGTGGCGTTCACCCGCTCGTAG-TTTTATGGAGCGCCAGCGTGTGATGTCCAATGCTTGTGTTGCGCGTGGCCAGGGCGTCATAGATGCAGGATCTATCTCCGTTGCAGGCTGGAGATCAAATCTTGATCCGAGGAGCTGTTTGTTCGCAGTTGGTCATAGAAAACAGGGGTGAAGTTGGAGGGCAGCTGGTCATTCCTCTTGCCAAGGAGGCCTGTCCCGTTGATCTCCCCTGTAACACACAGGGCTCTA---TGGTCGT-GTATCAGGTGT-GCACTCAGCCTCATGTTGTCTGTGTCCACCCCTACCCCTCACTTT------------GGG-----GG-GCTG--TGGGAGT--GCAGAGCCAGAGCAGTTTCCAGCT--TGAGTCTGGAAACGCATGCTGCAATG--AGAGGACCCTCCACCCCGCCC-TTCTCTCCTCCAGGTAGAGATA--CAGGTGGGATGGCAGTG
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65437210 572 -  98207768 --------------------GGGAGGA------------------------TTTGAC-----------CCACTAAAGGAATAAAGA----------------CGTGGAGCTTGAG----GGAATGCCATGAATGGGGG-------------------------------------------------------TCCTTGCCTGCT-CCCCATCTCTGGAAAGGTCTCCCCGACCTTC----CTCGTGTCACTTACTGAGGGTGTCATTCATATGTTGGAACTCATTAAGGATGGAATTGGTGCTTTGTCCAATAGTTCTGTTTCCCGTGGCCAGGATGTCAAACATGCACTTTCTGTCGCCTTTGCA-CCCAGAGGCCAAGTCTTCACCTGAGGCACTCTGATTCAACAGTTGAGACAGAAAGATGGGGGTGAACTTGGTAGGCAGCGGGTCTGCCCTTATCCCAAGGAGGCCTGTTCCGTTGACGTGCCCTGTAACACAGGAGGTACGAGGGTG------GTATAAGACAC------CAGTCATATTTCACTTGTGCCCACCCCTAGCTCT--CTGTATATGGTTTTGTGCGTAAGGGG-GTGGCCTGGGAGCTGGTAGGAACAGGATAATTTC-------AGAGTCTGGAAATCCCTGCTTCAGTGAGTGAAGACCACCCACTCCTTTCCTCCTTTCCT---GGAAGAGACGTGCAGCTAGGGTGGGAGCA
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29073382 594 +  31377067 --------------------------------------------------------------------------------------------TGGGAGTCATGG-------------GAGGAACAACCTGAGCAAAAGAATCTGTTAAATTTTTAAAGGAATATCGTGAAAAGGGTGGGGCGGGAGGGG-GGCTCCTAATCTGCCACCTAA-CTCTGCAAACGTCTCCCCGC---GCGCGACGCACGCCACTTACTGAGGGTGGCGTTCATCCGCTGCTGACTTGCGAAGAGCATCCTGGTGTTCAGGCCCGTGTCTGTGTTTCCTGTGGCCAGGCTGTCATAGATGCACCGCTCATCTTCATGACA-CTTGGAGAGCAGCATTTCATTTAAGGTTTTATTTTTCTGCAGGCTGGTAAGGAAATCGGGGGTGAAGTTGGAAGGCGGATGGTCACCTCTCTCGCCAAGGAGTCCCGTATCATTGGTTTTCCCTGTAAGACACAGGATGCAA---TGGCGGTGGCACCAGGGATGGTCTCCAGC---------------TCTACTCCCTCCCCTCACTTTATGTGCCTGGGGGTG-----AGCGAGG--CAGATGC--GGAGGGCTGGAGTGACTTCTGGCTTCTGAGGCCGGAAATGCCTACTCTGGTCAGTGAGAGC-CACCCCTGCCCTTGTCTCCTCTTCCAGGTAGAGAAGCGCAGATGGGATGGGAGTC
i canFam3.chr33                C 0 C 0

a score=39625.000000
s hg38.chr3_KI270935v1_alt        131838 14 +    197351 GTGGGGACAGCCCT
s panTro4.chr3_GL389630_random     96249 14 +    103936 GTGGGGACAGCCCT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199790103 14 + 202140232 GGGGGGACAGTCCT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120886398 14 + 123690457 GGGGGGACAGCCCT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           41711 13 +    111706 -AGGGGACAGTCCT
i rheMac3.chrUn_JH291127       C 0 I 10
s macFas5.chr2                     76491 13 + 192460366 -GGGGGACAGTCCT
i macFas5.chr2                 C 0 I 10
s papAnu2.chr2                     74149 13 - 187378091 -gggggacagtcct
i papAnu2.chr2                 C 0 I 10
s calJac3.chr17                   942777 14 -  74750902 GAGGGGACAGACCT
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65437782 12 -  98207768 --GGGGACAGACAT
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29073976 13 +  31377067 -GGGGGACAAGTCT
i canFam3.chr33                C 0 C 0
e chlSab2.chr15                   425120  9 -  91754291 I

a score=16162.000000
s hg38.chr3_KI270935v1_alt        131852 6 +    197351 GGGGGG--
s panTro4.chr3_GL389630_random     96263 6 +    103936 GGGGGG--
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199790117 6 + 202140232 GAGGGG--
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120886412 6 + 123690457 GGGGGG--
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           41734 6 +    111706 GGGGGG--
i rheMac3.chrUn_JH291127       I 10 C 0
s macFas5.chr2                     76514 6 + 192460366 GGGGGG--
i macFas5.chr2                 I 10 C 0
s papAnu2.chr2                     74172 6 - 187378091 gggggg--
i papAnu2.chr2                 I 10 C 0
s chlSab2.chr15                   425129 6 -  91754291 GGGGGG--
i chlSab2.chr15                I 9 C 0
s calJac3.chr17                   942791 4 -  74750902 --AGGA--
i calJac3.chr17                C 0 I 2
s mm10.chr16                    65437794 4 -  98207768 --GGGA--
i mm10.chr16                   C 0 I 3
s canFam3.chr33                 29073989 6 +  31377067 --GGGACC
i canFam3.chr33                C 0 C 0

a score=180335.000000
s hg38.chr3_KI270935v1_alt        131858  73 +    197351 GCA-CAGATTCCTCAG--------------------------ACCTTAGGGAGGATG---GAGGTCTGCTTCCTACAGGGCCGAGGGGGACGAC-ATAAACATA
s panTro4.chr3_GL389630_random     96269  73 +    103936 GCA-CAGATTCCTCAG--------------------------ACCTTAGGGAGGATG---GAGGTCTGCTTCCCACAGGGCCGAGGGGGACGAC-ATAAACATA
i panTro4.chr3_GL389630_random C 0 I 2340
s nomLeu3.chr11                120886418  73 + 123690457 GCA-CAGATTCATCAG--------------------------ACCTTAGGGAGGATG---GAGGTCTGCTTCCTACAGGGCCGAGGGGGACGAC-ATAAACATA
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           41740  73 +    111706 GCA-CAGATTCCTCGG--------------------------ACCTTAGGGAGGATG---GAGGTCTGCTTCCTACAGGGCTGAGGGGGACGAC-CTAAACACA
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     76520  73 + 192460366 GCA-CAGATTCCTCGG--------------------------ACCTTAGGGAGGATG---GAGGTCTGCTTCCTACAGGGCTGAGGGGGACGAC-CTAAACACA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     74178  73 - 187378091 gCA-CAGATTCCTCGG--------------------------ACCTTAGGGAGGATG---GAGGTCTGCTTCCTACAGGGCTGAGGGGGACGAC-CTAAACACA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   425135  73 -  91754291 GCA-CAGATTCCCCAG--------------------------ACCTCAGGGAGGATG---GAGGTCTGCTTCCTACAGGGCTGAGCGGGACGAC-CTAAACACA
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   942797  70 -  74750902 GCA-TAGATTCCTCAG--------------------------ACCTTACGAAGGAT------GGTCTGCTTCCTACAGGCCCGAGGGAGACGAC-ATAAACATA
i calJac3.chr17                I 2 I 15
s mm10.chr16                    65437801  64 -  98207768 TGG-CAAGGTCTTCAG--------------------------ACCTTCCCAAGGATGCATAAGA------TCCTACAAGCATAAGGGAGACAAC-ACA------
i mm10.chr16                   I 3 C 0
s canFam3.chr33                 29073995 100 +  31377067 GCACCAGAATCCTCAGCACTTCCTCCTGGCCTTTCCACTCCTCCCTCACAAAGGATG---GAGGTCCGG-TCCCACAGGCCTGAGGGACACGACGCTTTCCATC
i canFam3.chr33                C 0 C 0
e ponAbe2.chr3                 199790123   0 + 202140232 C

a score=66298.000000
s hg38.chr3_KI270935v1_alt        131931 37 +    197351 CCGGCTCCC---CTCACCTGCCCC-TCTGCCCCAGGACCCT
s nomLeu3.chr11                120886491 37 + 123690457 CCGGCTCCC---CTCACCTGCCCC-TCTGCCCCAGGACCCT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           41813 38 +    111706 CTGGCTCTC---CTTACCTGCCCCTTCTGCCCCGAGACCCT
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     76593 38 + 192460366 CTGGCTCTC---CTTACCTGCCCCTTCTGCCCCGAGACCCT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     74251 38 - 187378091 CTGGCTCTC---CTTACCTGCCCCTTCTGCCCCAAGACCCT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   425208 38 -  91754291 CTGGCTCTC---CTTACCTGCGCCTTCTGCCCCAAGACCCT
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   942882 38 -  74750902 CTGGCCTGC---CCCATCTGCCCTATCTGCCCCAGGACTCT
i calJac3.chr17                I 15 C 0
s mm10.chr16                    65437865 40 -  98207768 GCAGCTCCCTCACTGACCTGCCCCAGTGGCCTGAGGACCC-
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29074095 38 +  31377067 CCGCCCAGC---CGCACCTGCCCCGAGGACCCTCAAGCCCT
i canFam3.chr33                C 0 C 0
e ponAbe2.chr3                 199790123  0 + 202140232 C
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=57616.000000
s hg38.chr3_KI270935v1_alt        131968 16 +    197351 GCCCAGACTCACAGGT
s ponAbe2.chr3                 199790123 16 + 202140232 GCCCAGACTCACAGGT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120886528 16 + 123690457 GCCCAGACTCACAGGT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           41851 16 +    111706 GCCCAGACTCACAGGT
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     76631 16 + 192460366 GCCCAGACTCACAGGT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     74289 16 - 187378091 GCCCAGACTCACACGt
i papAnu2.chr2                 C 0 I 365
s chlSab2.chr15                   425246 16 -  91754291 GCCCAGACTCACAGGT
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   942920 16 -  74750902 GCCCAGACTCACAGGT
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65437905 14 -  98207768 --CCAGACTCACATGT
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29074133 14 +  31377067 --CCTCACTCACAGGT
i canFam3.chr33                C 0 C 0
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=889268.000000
s hg38.chr3_KI270935v1_alt        131984 474 +    197351 CATTCCAAAGTGGAAAAGCATCTCCTCAGGGCTCCCTGGGGGAATGGTGGAGCCATTGGGCATCCTGAAGTCGTCCTCTGGATTGTTATTCCAGACCCCTGAGGGA----CAGAGTGGGAGGTTGGCCACCCTGGGCACGCGGCTGTCCCCTTCCTGGGGAGCATCCGGCGGACGCAGTGGGGAGAGGCCAGGGCCTGGCAGCCTCTGCT-CTTGCA--CCTGCTGTCAGGCC------TCCAGGGGAGCCGGGAGGA-CGGGCCCTCACACCCTGCCCGTCTGCCTTCGGGAGGGGCGGG-AGGAAACGCGGGCAGCGGTGGAGGAGGGC-GGGAGGA-------------------------------TGTGGGAGGCAAGAGGAAAGGGAGAAAG-GATGGCTGTGC------CCCCCGCCTCCCCGCAGCCC-CCCCTGATGCTCCCTTAGAGCGGGCGGAGGACAGGAAGGGAGCCTCGGGGGAGGCTGGAGAAGCCCCTCGGCTCCCGGCCCGCTCTGTGCCC
s ponAbe2.chr3                 199790139 476 + 202140232 CATTCCATAGTGGAAAAGCATCTCCTCAGGGCTCCCTGGGGGAATGGTGGAGCCATTGGGCATCCTGAAGTCGTCCTCCGGATTGTTATTCCAGACCCCTGAGGGA----CAGAGTGGGAGGTTGGCCACCCTGGGCACGCGGCTGTCCCCTTCCTGGGGAGCATCCGGCGGACGCAGTGGGGAGAAGCCAGGGCCTGGCAGCCTCTGCT-CTTGCA--CCTGCTGTCCGGCC------TCCAGGGGAGCTGGGAGGA-CGGGCCCTCACACCCTGCCCGTCTGCCTTCGGGAGGGGGAGGCAGGAAACGCGGGCAGCGATGGAGGAGGGC-GGGAGGG-------------------------------TGTGGGAGGCAAGAGGAAAGGGAGAAAG-GATGGCTGTGC------CCCCCGCCTCCCCGGAGCCCACCCCTGATGCTCCCTTAGAGCGGGAGGAGGACAGGAAGGGAGCCTCGGGGGAGGCTGGAGAAGCCCCTCCGCTCCCGGCCTGCTCTGTGCCC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120886544 475 + 123690457 CATTCCATAGTGGAAAAGCATCTCCTCAGGGCTCCCTGGGGGGATGGTGGAGCCATTGGGCATCCTGAAGTCGTCCTCCGGATTGTTATTCCAGAGCCCTGAAGGA----CAGAGTGGGAGGTTGGCCACCCTGGGCACACGGCTGTCCCCTTCCTGGGGAGCATCCGGAGGACGCAGTGGGGAGAGGCCAGGGCCTGGCAGCCTCTGCT-CCTGCA--CCTGCTGTCAGGCC------TCCAGGGGAGCCGGGAGGA-CGGGCCCTCACACCCTGCCCGTCTGCCTTCgggaggggcggg-aggaaacgcaggcagcgatggaggagggc-gggagga-------------------------------tgtgggaggcaagaggaaagggagAAAG-GATGGCTGTGC------CCCCCGCCTCCCCGGAGCCCATCCCTGATGCTCCCTTAGAGCGGGAGGAGGACAGGAAGGGAGCCTCGGGGGAGGCTGGAGAAGCCCCTCGGCTCCCGGCCCGCTCTGTGCCC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           41867 483 +    111706 CATTCCGTAGTGGAAAAGCGTCTCCTCAGAGCTCCCTGGGGGGACGGTGGAGCCATTGGGCATCCTGAAGTCGTCCTCCGGATTGTTATTCCAGACTCCTGAGGGACAGTCAGAGTGGGAGGTTGGCCACCCTGGGCACACAGCTGTCCCCTTCCTGGGGAGCATCCAGTGAACGCAGTGGGGAGAGGCCAGGGCCTGGCAGCCTCTGCC-GTCGCA--CCTGCTGTCAGGCC------TCCAGGGGAGCCGGGAGGA-CGGGCCCTCACACCCTGCCCAGCTGCCTCCCGGAGGGGTGGG-AGG-AACGCGGGCAGCCGTGGAAGAGGGC-GGGAGGA-------------------------------TGTGGGAGGCAAGAGGAAAGGGCCAAAG-GATGGCTGTGACC-CCGCCCCCGACTCTCCGGAGCCCACCCCTGATGCTCCCTTAGAGCGGGAGGTGGCCAGAAAGGGTGCCTCGGTGGCGGCTGGAGAAGCCCCTCCGCTCCCGGCCCGCTCCGTGCCC
i rheMac3.chrUn_JH291127       C 0 M 489
s macFas5.chr2                     76647 483 + 192460366 CATTCCGTAGTGGAAAAGCGTCTCCTCAGAGCTCCCTGGGGGGACGGTGGAGCCATTGGGCATCCTGAAGTCGTCCTCCGGATTGTTATTCCAGACTCCTGAGGGACAGTCAGAGTGGGAGGTTGGCCACCCTGGGCACACAGCTGTCCCCTTCCTGGGGAGCATCCAGTGAACGCCCTGGGGAGAGGCCAGGGCCTGGCAGCCTCTGCC-GTCGCA--CCTGCTGTCAGGCC------TCCAGGGGAGCCGGGAGGA-CGGGCCCTCACACCCTGCCCGGCTGCCTTCAGGAGGGGTGGG-AGGAAACTCGGGCAGCCATGGAGGAGGGA-GGGAGGA-------------------------------TGTGGGAGGCAAGAGGAAAGGGCCAAAG-GATGGCTGTGACC-CCGCCCCCGACTCTCCGGGGCCCACCCCTGATGCTCCCTTAGAGCGGGAGGTGGCCAGAAAGGGTGCCTCGGTGGCGGCTGGAGAAGCCCCTCCGCTCCCGGCCCGCTCCGTGCC-
i macFas5.chr2                 C 0 C 0
s chlSab2.chr15                   425262 482 -  91754291 CATTCCGTAGTGGAAAAGCGTCTCCTCGGAGCTCCCTGGGGGAACGGTGGAGCCATTGGGCATCCTGAAGTCGTCCTCCGGATTGTTATTCCAGACTCCTGAGGGACAGTCAGAGTGGGAGGTTGGCCACCCTGGGCACACAGCTGTCCCCTTCCTGGGGAGCATCCAGTGAACACAGT-GGGAGAGGCCAGGGCCTGGCAGCCTCTGTC-GTGGCA--CCTGCTGTCAGGCC------TCCAGGGGAGCCGGGAGGA-CGGGCCCTCACAGCCTGCGCGGCTGCCTCCGGGAGGGGTGGG-AGG-AACGCGGGCAGCCATGGAGGAGGGC-GGGAGGA-------------------------------TGTGGGAGGCCAGAGGAAAGGGCCAAAG-GATGGCTGCGACC-CCGCCCCCGACTCCCCGGAGCCCGCCCCTGATGCTCCCTTAGAGCGGGAGGTGACCAGAAAGGGTGCCTCGGTGGCGGCTGGAGAAGCCCCTCCGCTCCCGGCCCGCTCCGTGCCC
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   942936 478 -  74750902 CATTCCATAGTGGAAAAGCGTGGCCTCAGAGCTACTTGGGGGAATGGTGGAGCCATTGGGCATCCTGAAGTCGTCCTCCGGATTGTTATTCCAGATCCCTGAGGGA----CAGAGTGGGAGGTTGGCCACGCTGGGCATTCGGCTGTCCCCTTCCCCTCGAGCAT-CGGGGGATGCAGGGAGGAGCAGCCAGGACCTGGCAGCCTCTGCC-TTTGCA--CCTGCTGTCAGGCC------TCCAGGGGAACCCGGAGGACCGGGCCTTCATGCGCTGCCCCTCTG-CTTAGGGAGGGTCGGC-GGGAAACACTGGCAGAGATACAGGAGGACAGGAAGGA-------------------------------TGTGGGAGGCAAGAAGAAA-GGAGGAAG-GACGGCAGCGGCCGCCACCCCCGCCTCCCTGGAGCACACCCCTGATGCTCCCTTAGAGCGGGAGGAGGGCAGGAAGGGAGACTTATCGGAGGCTGGAGAAGTCCCTC--CCCTAGGCCCGCTCCGTGCCC
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65437919 458 -  98207768 CATTCCATAGTAGAAAAGGGTCTCCTCAGAGCTGTTTGAGGGAATGGTGGAGCCATTGGGCATCCTGAAGTCATCTTCTGGATTGTCATTCCACACTCCTGTGAGA----CAGAGCAGGAGGTTCGATACCACAGGCTCA--------CCTTCTCCCGGGGGCATTCAATGG-------------------------GGCAGCTGCAACT-GTCCCAGGCCTAGGGTCGG--T------TCCAGGAGGTGGGAGAGGACCATGCACTCATACCCTGCCATTGTGCTTTaaaaaagg--aga-agaaagccaagaagaatgtgggggaagat-gggaggaaggaaggagacaagactaaaaacaggaaaagtagggaagggaaggggaggggaggaaggaGAAAGCTGAGC------CGCCACTTTCCCCATAGCATTTCCTTCATATTCCCTTAAAA-AAATGCCAAGCAGGAAATTAGCCTAAACAGTGTGTGAAGCAGCCCCTC--------------TCTGTGCCC
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29074147 355 +  31377067 CATTCCGTAGTGAAAAAGTGAGGCCTCGCTGCTATTGCCGGGAATGCTGGAGCCATTGGGCATCCTGAAGTCGTCTCCTGGATTGCCATTCCAAACTCCTGAGGGA----CAGAACAGGAGGTTGGCCATCCTGGGACTGTGGCTCCCCCC--------GAG-----------------------------------GGAAACCCCTTCCAGTTGCA--TCTGTCCTTGGCCCAGTCCTTCCGGGGGAGGAGAGAGGA-CCGTACCTCATAGCCCACCC-TCTGTCCCggggatgaa-gag-gggaaatggaggcgggggtggaggaagaa-gggg----------------------------------cgcgggagg--------------------gagggC-------------------TTCCCAGAGCCCATCCTCCAAGCCCCCCTG--------GCTGCCCTGAACCGGAGCTTTAG-----------GAAGC----------------------------
i canFam3.chr33                C 0 C 0
e papAnu2.chr2                     74305 365 - 187378091 I
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=385269.000000
s hg38.chr3_KI270935v1_alt        132458 285 +    197351 CAAGGGTTCTGCTCCAAGGAGGCGGAGAAAGGG--AGGCCGAGCAGGGCTGCCC------GGG---CCGCCGGCGTGG--GGGTCCGAGCTCCGGCTGGCTCCGCGGAGCCTCAGAGGCAGGTCCGAGCCGCCCTCACCCAGGAGCCCCTCCGTGCGGTTCTGGTACTCGGGCGGGAGGCTGGCGGAGGCGTGGAGGATGTTGGAGAGCGCGATCACCGAGACGGTGGCCCAGCCGTCGAAGCTGGCCGAGACCTCAGAGCCGTTGCGGCTCAGGAGGACTCCGGTGGCGTTGAACGT
s ponAbe2.chr3                 199790615 284 + 202140232 CGAGGGTTCTGCTCCAAGGAGGTGGAGAAAGGG--AGGCCGAGCAGGGCTGCCC------GGG---CCGCCGGCGTGG--GAGTCCGAGCTCCGGTTGGCTCCGCGGAGCCTCAGAGGCAGGTCCGAGCCGCCCTCACCCAGGAGCCCCTCCGTGCGGTTCTGGTACTCGGGCGGGAGGCTGGCGGAGGCGTGGAGGATGTTGGAGA-CGCGATCACCGAGACGGTGGCCCAGCCGTCGAAGCTGGCCGAGACCACGGAGCCGTTGCGGCCCAGGAGGACTCCCTTTTTAATGGACGT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120887019 285 + 123690457 CGAGGGTTCTGCTCCAAGGAGGCGGAGAAAGGG--AGGCCGAGCAGGGCTGCCC------GGG---CCGCGGGCGTGG--GGGTCCGAGCTCCGGCTGGCTCCGAATAGCCCCAGAGGCAGGTCCGAGCCGCCCTCACCCAGGAGCCCCTCCGTGCGGTTCTGGTACTCGGGTGGGAGGCTGGCGGAGGCGTGGAGGATGTTGGAGAGCGCGGTCACCGAGACGGTGGCCCAGCCGTCGAAGCTGGCCGAGACCACAGAGCCGTTGCGGCTCAGGAAGACTCCGGTGGCGTTGAACGT
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     77130 282 + 192460366 CGAGGGTTCTGCTCCAAGGAGGCGGAGAAAGGG--AGGCCGAGCAGGGCTGCCC------GGGC--CCGCGGGCGTGG--GGGTCCGAGCTCC----GGCTCCGTAGAGCCTCAGAGGCAGGTGCGCGCCGCCCTCACCCAGGAGCCCCTCCGTGCGGTTCTGGTACTCGGGCGGGAGGCTGGCGGAGGCGTGGAGGATGTCGGAGAGCGCGATCACCGAGACGGCAGCCCAGCCGTCGAAGCTGGCAGAGACCACGGAGCCGTTGCGGCTCAGGAGGACTCCGGTGGCGTTGACCGT
i macFas5.chr2                 C 0 C 0
s chlSab2.chr15                   425744 277 -  91754291 CGAGGGCTCTGCTCCAAGGAGGCGGAGGAAGGG--AGGCCGAGCA--GCTGCCC------GGGC--CCGCGGGCGTGG--GGGTCCGAGCTCC----GGCTCCGTAGAGCCTCAGAGGCAGGTCCG---CGCCCTCACCCAGGAGCCCCTCCGTGCGGTCCTGGTACTCGGGCGGGAGGCTGGCGGAGGCGTGGAGGATGCCGGAGAGCGCGACCACCGAGACGGCGGCCCAGCCATCGAAGCTGGCAGAGACCACGGAGCCGCTGCGGCTCAGGACGACTCCGGTGGCGTTGACCGT
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   943414 257 -  74750902 CGAGGGTTCTGCTCCGAGGAGGCCGGGAAAGGG--AAGCC-----------TTC------GGG-------------------AATCGACCTCCTGCTG---CCGCAGAGCCACAGAGGCAGGTCTGAGCCGCCCTCACCCAGGAGGCCCTCGGTGAGGTTCCAATACTCCTGCGGGAGGCTGGCGGAGGCGTGGAGGATGCTGGAGAGCGCCGTCACCGAGACCGTGGCAGAGCCGTCGAAGCTGGCCGAGACCTCGTGGCCGCTGTGGCTCAGGAGGACTCCGGGGGCGCTGACCGT
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65438377 245 -  98207768 ---------------TAGGGGACTGAGGAAGAACTGGGCAGGGCAGGGAAGTCCAAAGGAGGGA--TAGCTGCCTTGGTATAGTCTGAGCTCT------------------------GCA------------TCTTACCCAGAAGGCCCTCTGTGTGGTTTCGATATTCCTCTGATAGGCTGGAGGAGGCATGAAGGATGTTGGAGCGAGCAATCACAGAGATAGTCACTGTCCCATCAAAGTTGGCTGAGACTTGGGAGCCATTTTGGGTCAGCAGAACACCGGTGGTATTGAATAT
i mm10.chr16                   C 0 I 351
s canFam3.chr33                 29074502 229 +  31377067 CAAAGGCTC------------------ACAGGG--AAGCTGAGAGGTCTCGTCC------CCGCCGCCCCGGGCAGGG--TGGTGCCAGCTTC-----------------------------------------TCACCCAGGAGGCCCTCGGTGCGCCCCCGGTACTCCGCGGGGAGGCCGCACGAGGCGTGGAGGATGTTGGACAGGGCCCTCACCGAGACGGCCACCGCCCCGTCGAAGGCGGCCGACACCACGGAGCCCGCGCGGGTCACCGTGACGCCGGTGCTGTTGAATGT
i canFam3.chr33                C 0 C 0
e rheMac3.chrUn_JH291127           42350 489 +    111706 M
e papAnu2.chr2                     74305 365 - 187378091 I
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=49294.000000
s hg38.chr3_KI270935v1_alt        132743 39 +    197351 CTCCTGGCCTGGAGCATCGGGAGGCAGCGGAGAGGAAGC
s ponAbe2.chr3                 199790899 39 + 202140232 CTCCTGGCCTGGAGCATCCGGAGGCAGCGGAGAGGAAGC
i ponAbe2.chr3                 C 0 I 907
s nomLeu3.chr11                120887304 39 + 123690457 CTCCTGGCCTGGAGCATCGGGAGGCAGCGGAGAGGAAGC
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     77412 39 + 192460366 CTCCTGGCCTGGAGCATCGGGAGGGCGCGGAGAGGAAGC
i macFas5.chr2                 C 0 C 0
s chlSab2.chr15                   426021 39 -  91754291 CTCCTGGCCTGGAGCATCGGGAGGGCGCGGAGAGGAAGC
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   943671 38 -  74750902 CTCTGGGCCTGGAATTCCGGGAGGCAGCTGA-AGGACAC
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29074731 35 +  31377067 CTCCCGGCCTGGA----CGTGGGGAGACAGATGGGGAGC
i canFam3.chr33                C 0 C 0
e rheMac3.chrUn_JH291127           42350 489 +    111706 M
e mm10.chr16                    65438622 351 -  98207768 I
e papAnu2.chr2                     74305 365 - 187378091 I
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=12070.000000
s hg38.chr3_KI270935v1_alt        132782 38 +    197351 CAGGTCGGCAccacggcccgcaccaaacccgcgccctg
s nomLeu3.chr11                120887343 38 + 123690457 CAGGTCGGCACCGCGGCCCCCACCAAATCCGGGCCCTG
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     77451 38 + 192460366 CAGGTCGGCACCGCGGCCCCCACCGAACCCGCGCCCTG
i macFas5.chr2                 C 0 M 584
s chlSab2.chr15                   426060 38 -  91754291 CAGGTCGGCACCGCGGCCCCCACCGAACCCGCGCCCCG
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   943709 36 -  74750902 CAGATCCGACACGCAGACC-TGCCAGACACCTTCCAG-
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29074766  6 +  31377067 ----------CCGGGG----------------------
i canFam3.chr33                C 0 C 0
e rheMac3.chrUn_JH291127           42350 489 +    111706 M
e mm10.chr16                    65438622 351 -  98207768 I
e papAnu2.chr2                     74305 365 - 187378091 I
e ponAbe2.chr3                 199790938 907 + 202140232 I
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=3384.000000
s hg38.chr3_KI270935v1_alt        132820 14 +    197351 ccgggcccgcacca
s nomLeu3.chr11                120887381 14 + 123690457 CCCGGCCGGCACCA
i nomLeu3.chr11                C 0 I 379
s chlSab2.chr15                   426098 14 -  91754291 CCCGGCCCGCACCC
i chlSab2.chr15                C 0 I 1
s calJac3.chr17                   943745 13 -  74750902 -CCGGGCCACACCA
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29074772  5 +  31377067 CCGGG---------
i canFam3.chr33                C 0 C 0
e rheMac3.chrUn_JH291127           42350 489 +    111706 M
e mm10.chr16                    65438622 351 -  98207768 I
e macFas5.chr2                     77489 584 + 192460366 M
e papAnu2.chr2                     74305 365 - 187378091 I
e ponAbe2.chr3                 199790938 907 + 202140232 I
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=5495.000000
s hg38.chr3_KI270935v1_alt        132834 12 +    197351 cccccaccccgc
s ponAbe2.chr3                 199791845 12 + 202140232 cccccaccccGC
i ponAbe2.chr3                 I 907 C 0
s nomLeu3.chr11                120887774 12 + 123690457 CCCCCACCCCGC
i nomLeu3.chr11                I 379 C 0
s chlSab2.chr15                   426113 12 -  91754291 Gcctccccctgc
i chlSab2.chr15                I 1 I 23
s calJac3.chr17                   943758  8 -  74750902 -CCTCCCTC---
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29074777  7 +  31377067 -----ACCCCGC
i canFam3.chr33                C 0 C 0
e rheMac3.chrUn_JH291127           42350 489 +    111706 M
e mm10.chr16                    65438622 351 -  98207768 I
e macFas5.chr2                     77489 584 + 192460366 M
e papAnu2.chr2                     74305 365 - 187378091 I
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=115891.000000
s hg38.chr3_KI270935v1_alt        132846 76 +    197351 cccTGGGGCTGAAGCCGGGAGGGGTCTGCACTGGAGGC-GGAGAA--GAGGCCGGCGAGCTGCACGCCCCGCTCGGGGG
s ponAbe2.chr3                 199791857 76 + 202140232 CCCCGGGGCTGAAGCCGGGAGGGATCCGCACTGGAGGC-AGAGAA--GAGGCCGGCAAGCTGCAGGACCCGCTGGGGGG
i ponAbe2.chr3                 C 0 I 19
s nomLeu3.chr11                120887786 76 + 123690457 CCCCAGGGCTGAAGCCGGGAGGGATCTGCACTGGAGGC-GGAGAA--GAGGCCGGCGAGCTGCAGGCCCCGCTGCGGGG
i nomLeu3.chr11                C 0 I 4
s rheMac3.chrUn_JH291127           42847 77 +    111706 CCCCGGGACTGAAGCCTGCAGGAATCTGCACTGGAGGCGGGAGAA--GAGGCCGGCGAGCTGCAGGCCCCGCTCCGGGG
i rheMac3.chrUn_JH291127       M 489 I 1
s macFas5.chr2                     78076 77 + 192460366 CCCCGGGACTGAAGCCTGGAGGAATCTGCACTGGAGGCGGGAGAA--GAGGCCGGCAAGCTGCAGGCCCCGCTCCGGGG
i macFas5.chr2                 M 584 I 1
s chlSab2.chr15                   426148 77 -  91754291 ccccGGGGCTGAAGCCGGGAGGAATCTGCACTGGAGGCGGGAGAA--GAGGCCGGCGAGCTGCAGGCCCCGCTCCGGGG
i chlSab2.chr15                I 23 I 1
s calJac3.chr17                   943766 78 -  74750902 CCCCGAGGCTGACACCCGGAGGGCTCCGCACTGGAGGCGGGAGAAGGGAGGCCGCGGAGCT-CAGGCCCGACTCCCAGG
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29074784 61 +  31377067 -----GGCCCAAGACTTGGGGGGG-------AAGGGGC-AGGGGC--GGGGCGAG---GCTCCGAGGGCCGCTTGGGGG
i canFam3.chr33                C 0 C 0
e mm10.chr16                    65438622 351 -  98207768 I
e papAnu2.chr2                     74305 365 - 187378091 I
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=10346.000000
s hg38.chr3_KI270935v1_alt        132922 12 +    197351 TAGAGGCTGCGC
s nomLeu3.chr11                120887866 12 + 123690457 AAGAGGCTGCGC
i nomLeu3.chr11                I 4 C 0
s rheMac3.chrUn_JH291127           42925 12 +    111706 AAGAGGCTGCGC
i rheMac3.chrUn_JH291127       I 1 I 6
s macFas5.chr2                     78154 12 + 192460366 AAGAGGCTGCGC
i macFas5.chr2                 I 1 C 0
s chlSab2.chr15                   426226 12 -  91754291 AAGAGGCTGCGC
i chlSab2.chr15                I 1 C 0
s calJac3.chr17                   943844 11 -  74750902 -AAAGGCTGTCC
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29074845  6 +  31377067 -----CCTGGG-
i canFam3.chr33                C 0 C 0
e mm10.chr16                    65438622 351 -  98207768 I
e papAnu2.chr2                     74305 365 - 187378091 I
e ponAbe2.chr3                 199791933 19 + 202140232 I
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=5976.000000
s hg38.chr3_KI270935v1_alt        132934 11 +    197351 TCTCTTGGCCC
s nomLeu3.chr11                120887878 11 + 123690457 GCTCTTGGCCC
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     78166 11 + 192460366 GCACTTGGCCT
i macFas5.chr2                 C 0 C 0
s chlSab2.chr15                   426238 11 -  91754291 GCACTGGACCC
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   943855 11 -  74750902 GCACTCGGCTC
i calJac3.chr17                C 0 I 678
s canFam3.chr33                 29074851  4 +  31377067 -------GCCT
i canFam3.chr33                C 0 C 0
e rheMac3.chrUn_JH291127           42937  6 +    111706 I
e mm10.chr16                    65438622 351 -  98207768 I
e papAnu2.chr2                     74305 365 - 187378091 I
e ponAbe2.chr3                 199791933 19 + 202140232 I
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=8239.000000
s hg38.chr3_KI270935v1_alt        132945 67 +    197351 -----TGCACCGCC---ACGCACCGGGCCCTGCACCGCCACGCACCGGGCCCGGCACCACAACGCACTCGGCCCT
s nomLeu3.chr11                120887889 45 + 123690457 -----TGCACCGCC---ACGCACCGGGCCCTGCACCGCC----------------------ACGCAGTCGGCCCT
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     78177 45 + 192460366 -----TGCACCGCC---ACGCACTGGACCCTGCACCGCA----------------------ACGCGCTCGGCCCT
i macFas5.chr2                 C 0 C 0
s chlSab2.chr15                   426249 27 -  91754291 -----TGCACCGCC---ACGCCCTGGACCCTGCAC----------------------------------------
i chlSab2.chr15                C 0 C 0
s canFam3.chr33                 29074855 52 +  31377067 GGGGATGCCTTTCCCAGGGGCCCCGAGCCAAGC-CCACA----------------------GGACACCCCTTCTT
i canFam3.chr33                C 0 I 85
e rheMac3.chrUn_JH291127           42937  6 +    111706 I
e mm10.chr16                    65438622 351 -  98207768 I
e calJac3.chr17                   943866 678 -  74750902 I
e papAnu2.chr2                     74305 365 - 187378091 I
e ponAbe2.chr3                 199791933 19 + 202140232 I
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=18544.000000
s hg38.chr3_KI270935v1_alt        133012 52 +    197351 GCACCGCCACGC---------ACCGGGCCCTGCACCGCAACGCACCCGGCCCTGCACCGCA
s nomLeu3.chr11                120887934 52 + 123690457 GCACTGCCACGC---------ACCGGGCCCTGCACCACAACGCACCCGGCCCGGCACCGCA
i nomLeu3.chr11                C 0 T 111
s macFas5.chr2                     78222 52 + 192460366 GGATCGCCACGC---------CCTGGACCCTGCACCGCAACGCTCTGGGCCCTGCATGGCC
i macFas5.chr2                 C 0 C 0
s chlSab2.chr15                   426276 57 -  91754291 ----CGCCACACNNNNNNNNNNCTGGACCCTgcaccgcaacgcgctcggccctgcaccgcc
i chlSab2.chr15                C 0 C 0
e rheMac3.chrUn_JH291127           42937  6 +    111706 I
e mm10.chr16                    65438622 351 -  98207768 I
e canFam3.chr33                 29074907 85 +  31377067 I
e calJac3.chr17                   943866 678 -  74750902 I
e papAnu2.chr2                     74305 365 - 187378091 I
e ponAbe2.chr3                 199791933 19 + 202140232 I
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=1665.000000
s hg38.chr3_KI270935v1_alt        133064 8 +    197351 ACGCACCG
s macFas5.chr2                     78274 8 + 192460366 ACGCCCTG
i macFas5.chr2                 C 0 C 0
s chlSab2.chr15                   426333 8 -  91754291 acgcactg
i chlSab2.chr15                C 0 C 0
e rheMac3.chrUn_JH291127           42937 6 +    111706 I
e mm10.chr16                    65438622 351 -  98207768 I
e canFam3.chr33                 29074907 85 +  31377067 I
e calJac3.chr17                   943866 678 -  74750902 I
e papAnu2.chr2                     74305 365 - 187378091 I
e ponAbe2.chr3                 199791933 19 + 202140232 I
e nomLeu3.chr11                120887986 111 + 123690457 T
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=2484.000000
s hg38.chr3_KI270935v1_alt        133072 13 +    197351 GGCCCTGCACCGC
s rheMac3.chrUn_JH291127           42943 13 +    111706 GGCCTTGCACAGC
i rheMac3.chrUn_JH291127       I 6 C 0
s macFas5.chr2                     78282 13 + 192460366 GACCCTGCCCCGC
i macFas5.chr2                 C 0 C 0
e mm10.chr16                    65438622 351 -  98207768 I
e canFam3.chr33                 29074907 85 +  31377067 I
e calJac3.chr17                   943866 678 -  74750902 I
e chlSab2.chr15                   426341  0 -  91754291 C
e papAnu2.chr2                     74305 365 - 187378091 I
e ponAbe2.chr3                 199791933 19 + 202140232 I
e nomLeu3.chr11                120887986 111 + 123690457 T
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=31409.000000
s hg38.chr3_KI270935v1_alt        133085 53 +    197351 CACGCACCCGGCCCTGCACCGCCACGCACCCGGCCCTGCACCGCCACGCACCG
s nomLeu3.chr11                120887875 53 + 123690457 CGCGCTCTTGGCCCTGCACCGCCACGCACCGGGCCCTGCACCGCCACGCAGTC
i nomLeu3.chr11                T 111 C 0
s rheMac3.chrUn_JH291127           42956 53 +    111706 CACACACTGGACCCTGCACCGCAACGCGCTCGGCCCTGGATCGCCACGCCCTG
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     78295 53 + 192460366 AACGCGCTGGGCCCTGGATCGCCACGCACTGGACCCTGCACCGCCACACACTG
i macFas5.chr2                 C 0 T 44
s chlSab2.chr15                   426341 44 -  91754291 ---------gaccctgcaccgccacgccctggaccctgcaccgccacgcactg
i chlSab2.chr15                C 0 C 0
e mm10.chr16                    65438622 351 -  98207768 I
e canFam3.chr33                 29074907 85 +  31377067 I
e calJac3.chr17                   943866 678 -  74750902 I
e papAnu2.chr2                     74305 365 - 187378091 I
e ponAbe2.chr3                 199791933 19 + 202140232 I
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=20374.000000
s hg38.chr3_KI270935v1_alt        133138 44 +    197351 GGCCCTGCACCGCCACGCACCGGGCCCTGCACCACAACGCACCC
s nomLeu3.chr11                120887928 44 + 123690457 GGCCCTGCACTGCCACGCACCGGGCCCTGCACCACAACGCACCC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           43009 44 +    111706 GACCCTGCACCGCAACGCGCTGGGCCCTGCATGGCCACGCCCTG
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     78304 44 + 192460366 GGCCCTGGATCGCCACGCACTGGACCCTGCACCGCCACACACTG
i macFas5.chr2                 T 44 C 0
s chlSab2.chr15                   426385 22 -  91754291 ----------------------gaccctgcaccgccacgccctg
i chlSab2.chr15                C 0 C 0
e mm10.chr16                    65438622 351 -  98207768 I
e canFam3.chr33                 29074907 85 +  31377067 I
e calJac3.chr17                   943866 678 -  74750902 I
e papAnu2.chr2                     74305 365 - 187378091 I
e ponAbe2.chr3                 199791933 19 + 202140232 I
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=11904.000000
s hg38.chr3_KI270935v1_alt        133182 11 +    197351 GGCCCTGCACC
s ponAbe2.chr3                 199791952 11 + 202140232 Ggccctgcacc
i ponAbe2.chr3                 I 19 C 0
s nomLeu3.chr11                120887972 11 + 123690457 GGCCCGGCACC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           43053 11 +    111706 GACCCTGCCCC
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     78348 11 + 192460366 GACCCTGAACC
i macFas5.chr2                 C 0 C 0
s chlSab2.chr15                   426407 11 -  91754291 gaccctgcacc
i chlSab2.chr15                C 0 C 0
e mm10.chr16                    65438622 351 -  98207768 I
e canFam3.chr33                 29074907 85 +  31377067 I
e calJac3.chr17                   943866 678 -  74750902 I
e papAnu2.chr2                     74305 365 - 187378091 I
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=26718.000000
s hg38.chr3_KI270935v1_alt        133193 30 +    197351 GCAAAGCACTCGGCGCGGCACCGCCACGCG
s ponAbe2.chr3                 199791963 30 + 202140232 gccacgcactgggccctgcaccgccacgca
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120887983 30 + 123690457 GCAACGCGCTCGGCCCTGCACCGCAACGCG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           43064 30 +    111706 GCAACGCGCTGGGCCCTGGATCGCCACGCA
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     78359 30 + 192460366 GCAATGCGCTCGGCCCTGCACCGCAACACG
i macFas5.chr2                 C 0 T 41
s chlSab2.chr15                   426418 30 -  91754291 gcaacgccctggacgctgcaccgccacacg
i chlSab2.chr15                C 0 C 0
s canFam3.chr33                 29074992 21 +  31377067 GCGAGGCTCCCGGGGTGG---------GTG
i canFam3.chr33                I 85 C 0
e mm10.chr16                    65438622 351 -  98207768 I
e calJac3.chr17                   943866 678 -  74750902 I
e papAnu2.chr2                     74305 365 - 187378091 I
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=1797.000000
s hg38.chr3_KI270935v1_alt        133223 25 +    197351 CCCGGCCCTGCACCACAACGCACCC
s ponAbe2.chr3                 199791993 25 + 202140232 ctgggccctgcaccgcaacgcgctc
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120888013 25 + 123690457 GCTTCCCGCCCACCTCACTGCTCCC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           43094 25 +    111706 CTGGACCCTGCACCGCCACACACTG
i rheMac3.chrUn_JH291127       C 0 C 0
s chlSab2.chr15                   426448 17 -  91754291 ctggaccctgcaccgca--------
i chlSab2.chr15                C 0 C 0
s canFam3.chr33                 29075013  3 +  31377067 -----CCC-----------------
i canFam3.chr33                C 0 C 0
e mm10.chr16                    65438622 351 -  98207768 I
e calJac3.chr17                   943866 678 -  74750902 I
e macFas5.chr2                     78389 41 + 192460366 T
e papAnu2.chr2                     74305 365 - 187378091 I
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=1205.000000
s hg38.chr3_KI270935v1_alt        133248 2 +    197351 GG
s ponAbe2.chr3                 199792018 2 + 202140232 gg
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120888038 2 + 123690457 GG
i nomLeu3.chr11                C 0 T 54
s rheMac3.chrUn_JH291127           43119 2 +    111706 GA
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     78348 2 + 192460366 GA
i macFas5.chr2                 T 41 C 0
e mm10.chr16                    65438622 351 -  98207768 I
e canFam3.chr33                 29075016 0 +  31377067 C
e calJac3.chr17                   943866 678 -  74750902 I
e chlSab2.chr15                   426465 0 -  91754291 C
e papAnu2.chr2                     74305 365 - 187378091 I
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=6816.000000
s hg38.chr3_KI270935v1_alt        133250 12 +    197351 CCCTGCACCGCC
s ponAbe2.chr3                 199792020 12 + 202140232 ccctgcaccgcc
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chrUn_JH291127           43121 12 +    111706 CCCTGAACCGCA
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     78350 12 + 192460366 CCCTGAACCGCA
i macFas5.chr2                 C 0 C 0
s canFam3.chr33                 29075016 12 +  31377067 CCCCAAGCCCCC
i canFam3.chr33                C 0 C 0
e mm10.chr16                    65438622 351 -  98207768 I
e calJac3.chr17                   943866 678 -  74750902 I
e chlSab2.chr15                   426465  0 -  91754291 C
e papAnu2.chr2                     74305 365 - 187378091 I
e nomLeu3.chr11                120888040 54 + 123690457 T
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=57843.000000
s hg38.chr3_KI270935v1_alt        133262 69 +    197351 ACGCGCCCGGCCCTGCACCGCAACGCGGCTTCCCGCCCACCTCGCTGCTCCCGGTGCGGGGAGGGGGCG
s ponAbe2.chr3                 199792032 69 + 202140232 acgcacggggccctgcaccgcaacgcGGCTTCCCGCCCACCTCACTGCTCCCGGTGCGGGGAGGGGGCG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120887986 69 + 123690457 ACGCGCTCGGCCCTGCACCGCAACGCGGCTTCCCGCCCACCTCACTGCTCCCGGTGCGGGGAGGGGGCG
i nomLeu3.chr11                T 54 C 0
s rheMac3.chrUn_JH291127           43133 56 +    111706 ATGCGCTCGGCCCTGCACCGCAACACGGCTTCCCGCCCAGCTCGCTGCTCCC-------------GGAG
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     78362 56 + 192460366 ATGCGCTCGGCCCTGCACCGCAACACGGCTTCCCGCCCAGCTCGCTGCTCCC-------------GGAG
i macFas5.chr2                 C 0 C 0
s chlSab2.chr15                   426465 56 -  91754291 acgcgctcggccctgcacagcaACACGGCTTCCCGCCCAGCTCGCTGCTGCC-------------GGAG
i chlSab2.chr15                C 0 C 0
s canFam3.chr33                 29075028 30 +  31377067 CCAAGCCCGACCCGAGGAGGCAGGGGAGCT---------------------------------------
i canFam3.chr33                C 0 C 0
e mm10.chr16                    65438622 351 -  98207768 I
e calJac3.chr17                   943866 678 -  74750902 I
e papAnu2.chr2                     74305 365 - 187378091 I
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=10992.000000
s hg38.chr3_KI270935v1_alt        133331 10 +    197351 GCCGGCGCTC
s ponAbe2.chr3                 199792101 10 + 202140232 GCCGGCGCTC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120888055 10 + 123690457 GCCGGCGCTC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           43189 10 +    111706 GCAGGGGCTC
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     78418 10 + 192460366 GCAGGGGCTC
i macFas5.chr2                 C 0 C 0
s chlSab2.chr15                   426521 10 -  91754291 ATAGGCGCTC
i chlSab2.chr15                C 0 C 0
s mm10.chr16                    65438973 10 -  98207768 GCTGACATTA
i mm10.chr16                   I 351 C 0
s canFam3.chr33                 29075058 10 +  31377067 GACGGCTGTC
i canFam3.chr33                C 0 C 0
e calJac3.chr17                   943866 678 -  74750902 I
e papAnu2.chr2                     74305 365 - 187378091 I
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=382332.000000
s hg38.chr3_KI270935v1_alt        133341 169 +    197351 CCCAACCTACCTCCGCCGTCTTCATGGTCAGGCTGAAATGTCACAGTCTGGTTATCCAGCAGGACACGGATTGCGTCGTGAGGCTCAAGGAGCCATTGGACCTGGAAGGAGATGGGAGGGGGCCTGAGCCCGACCCGCAGGTGGAGCCGACGCCCAGG-AAAGCAGCTGG
s ponAbe2.chr3                 199792111 169 + 202140232 CCCAGCCTACCTCCGCCGCCTTCATGGTCAGGCTGAAATGTCACAGTCTGGTTATCCAGCAGGACACGGATTGCGTCGTGAGGCTCAAGGAGCCATTGGACCTGGAAGGAGATGGGAGGGGGCCTGAGCCCGACCCGCAGGTGGAGCCGACGCCCAAG-AAAGCGGCTGG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120888065 169 + 123690457 CTCAGCCTACCTCTGCCGTCTTCATGGCCAGGCTTAAATGTCACAGTCTGGTTATCCAGCAGGACATGGATTGCGTCGTGAGGCTCAAGGAGCCATTGGACCTGGAAGGAGATGGGAGGGGACCTGAGCCCCACTCGCAGGTGGAGCCGACGCCCAGG-AAAGCGGCTGG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           43199 169 +    111706 CCCAGCCCACCTCCGCCGTCTCCATGTCCAGGCTCAAATGTCACAGTCTGGTTATCCAGCAGGACATGGATTCCATCATGAGGCTCAAGGAGCCATTGGACCTGGAAGGAGATGGGAAGGGGTCTGAGCCCGACCCGCAGGTGGAGCCGACGCCCAGG-AGAGCGGCTGG
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     78428 169 + 192460366 CCCAGCCCACCTCCGCCGTCTCCATGTCCAGGTTCAAATGTCACAGTCTGGTTATCCAGCAGGACATGGATTCCATCATGAGGCTCAAGGAGCCATTGGACCTGGAAGGAGATGGGAAGGGGTCTGAGCCCGACCCGCAGGTGGAGCCGACGCCCAGG-AGAGCGGCTGG
i macFas5.chr2                 C 0 C 0
s chlSab2.chr15                   426531 169 -  91754291 CCCAGCCCACCTCCGCCGTCTCCATGGCCAGGCTCAAATGTCACAGTCTGGTTATCCAGCAGGACATGGATTCCATCATGAGGCTCAAGGAGCCATTGGACCTGGAAGGAGATGGGAAGGGGTCTGAGCCCGACCCGCAGGTGGAGCCGACGCCCAGG-AGAGCGGCTGG
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   944544 169 -  74750902 CCCACCCTACCTCCATCGTCTTCGTGGTCAGGCTCAAACGTCACATTCTGGTTGTCAAGCAGAACACGGATTCTGTCGTGAGGCTCAAGGAGCCACTGAACCTGCAAGGAGATGGGAGGGGAGCTGAGGCCGACCCGCAGGTGCAGCAGATGCCCAGG-AAAGCATAGGG
i calJac3.chr17                I 678 C 0
s mm10.chr16                    65438983 163 -  98207768 CGGAGCCTACCTTCAGTGTCT------CTGGTGTTAAAGGCCACAGTCTGGTTATTGTATACGACTCGGATTTTGTCACTGGGCTCAAGAAACCACTGAACCTGGGAAAGAATTGGAGGAGGCCTAAGCCCAACCAGCAGGCACAGCAGAGGCCTGGA-AATGAGGCCAG
i mm10.chr16                   C 0 I 1009
s canFam3.chr33                 29075068 160 +  31377067 CCCAGCCTACCTTCG---------TGCTGAGTCTCAAACGTCACAGTCTGGTTGTTGACCTGCACGCGGACCGTGTCATTGGGCTCGAGGAGCCATCGGACCTGGGAGAGAATTGGAGGAGGCCTAAGCCGGACCCTCGGGTGGGCCCAGGGCCTGAGCATGGAGGCCA-
i canFam3.chr33                C 0 C 0
e papAnu2.chr2                     74305 365 - 187378091 I
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=494625.000000
s hg38.chr3_KI270935v1_alt        133510 324 +    197351 GAGAGCCCCTGGGGCTGGAAGCTGCGCCCTGGGCCGGGAGGAAGGCGCTGGAGGCCGCGGCCTGA-GGTGATGCCAGCCGCcgtctaccgtgt----gctcggca-gggccag--------gcatggttttcggattatgccctttagctcttacaacag-cccgtgaggcaggtaatg---tcatccccattcttactaggagaaaaccaaatta----------agtagtttcttcgaagccaagcagctgggaaaccgtggggccagagccctaatcca-CCATCCCCAGGATTTACTCCG-----GGACAGCTGCGTGGATGGGCTGTGTcctccctc--cctcctgcccggcttc
s ponAbe2.chr3                 199792280 323 + 202140232 GGGAGCCCCCGGG-CTGGAAGCTGCGCCCTGGGCCGGGAGGAAGGCGCTGGAGGCCGCGGCCCAA-GGTGATGCCAGCCGCcgtctaccgtgt----gctcggca-gggccag--------gcatggttttcggattatgccctttagctcttacaacac-cccgtgacgcaggtaatg---tcatcctcattcttactaggagaaaaccaagtta----------agtagtttcttcgaagccaaacagctgggaaaccgtggggccagagccctaatcca-CCATCCCCAGGATTTACTCCG-----GGACAGCTGCGTGGATGGGCTGTGTCCTCCCTC--CCTCCTGCCCAGCTTC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120888234 324 + 123690457 GAGAGCCCCCGGGGCTGGAAGCTGCGCCCTGGGCCGGGAGGAGGGCGCTGGAGGCCGCCGCCCGA-GGTGATGCCAGCCGCcgtctaccctgt----gctcagca-gggtcag--------gcatagttttcggattatcccctttagctcttacaacag-cccatgaggcaggtaatg---ttatccccattcttactaggagaaaaccaagttc----------agtagtttcttcgaagccaaacagctgggaaaccgtggggccagagccctaatcca-CCATCCCCAGGATTGACTCCG-----GGACAGCTGCGTGGATAGGATGTGTcctccctc--cctcctgcccagcttc
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           43368 321 +    111706 GAGAGCCCCCGGGGCTGGAAGCTGCGCCCTGGGCCTGGAGGAAGGCGCTGGAGGCCGCGGCCCGA--GTGACGCCAG-CCCcgtctaccgtgt----gctccgca-gggccag--------gcatggttttcggatgagcccctttagctctcacaacag-cccgtgaggcaagtcatg---ttatccccgttcttaccaggagaaaaccaagtta----------agtagtttcttcgaagccaaacagctgggaaaccgtggcgccagAGCCGTAATCCC-CCATCCGCACGATTTACTCCG-----GGACAGCTGCGCGGATGGGGTGTGG-CTCCCTC--CCTCCTGCCCGGCTTC
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     78597 321 + 192460366 GAGAGCCCCCGGGGCTGGAAGCTGCGCCCTGGGCCTGGAGGAAGGCGCTGGCGGCCGCGGCCCGA--GTGACGCCAG-CCCcgtctaccgtgt----gctccgca-gggccag--------gcatggttttcggatgagcccctttagctctcacaacag-cccgtgaggcaagtcatg---ttatccccgttcttaccaggagaaaaccaagtta----------agtagtttcttcgaagccaaacagctgggaaaccgtggcgccagAGCCGTAATCCC-CCATCCGCACGATTTACTCCG-----GGACAGCTGCGCGGATGGGGTGTGG-CTCCCTC--CCTCCTGCCCGGCTTC
i macFas5.chr2                 C 0 C 0
s chlSab2.chr15                   426700 321 -  91754291 GAGAGCCCCCGGGGCTGGAAGCTGCGCCCTGGGCCTGGAGGAAGGCGCTGGAGGCCGCGGCCCGA--GTGACGCCAGCCCCcgtctacggtgt----gctccgca-gggccag--------gcatggttttcggatgatcccctttagctctcacaacag-cccgtgaggcaagtcatg---ttatccccgttcttaccaggagaaaaccaagtta----------agtagtttcttcgaagccaaacagctgggaaaccgtggcgccagAGCCGTAATCCC-CCATCCCCAGGATTTACTCCG-----GGACAGGTGCGCGGATGGGGTGTGG-CTCCCTC--CCTCCTGCCCGGCTT-
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   944713 282 -  74750902 GAGAGTGCCTGGGGCTG-------------------GGAGGAAGGGGCTGGAGGCTGCAGCC------------------------actgtgt----gctctgca----ccag--------gcctggttttcagatgatccccttcaactcccacagcag-cctgtgaggcaggtaacgttattatccccattccgactagaag-aaaccaagtta----------agtagtttctttgaaaccaaacagctgggaaaccgtggtgccagaaACCTCATCCTGCCACCCCCAGGATTTACTCGG-----GGACAGCTGTGAGGGTGGAATGTGACCTCCCTC--CCTCCTGCCCGGCTTC
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29075228 318 +  31377067 CAGAGGGCCTGGA--------------CCCGAGCCCCGAGGACGAGGCGGGTGG-----GCCTGACGGTGAGGTTG--CGCCGCCGACAGCGCTAGGGCGCGGCATGGGCCGGCTGagagcgcacgtttctcagatgatctcatttaaagctcacaacagccccgtgaggcaa-tattg---tcatcctcagt-ttactccaagaaaagggaggcagaggcgcccgggtggctccttgggtg---agcctctg-----cctcgggcccaggg-cgtgatccc-tgggtcgtgggatcgagtcctgcatcgggctcctgcaggga--gcctgcgt-ctccctctgcctgtgtctctgc---
i canFam3.chr33                C 0 C 0
e mm10.chr16                    65439146 1009 -  98207768 I
e papAnu2.chr2                     74305 365 - 187378091 I
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=750777.000000
s hg38.chr3_KI270935v1_alt        133834 335 +    197351 ccctccttcgctctcttcc----------------------------------------------------------tTCTCCTCGGCCTCAGTATGTGGCTGAAGG----------------TCCCTGT-----GGG-----------TGGAATGCAGGGAGGTTCCC-------GGCA--------------------------------------------CCCCTCACTCACCGTGACGGGG---CCCAGGCTGCTGGAGCGGTACTGAGCCGCAAAGGCGATGAAGTTGGTGGCCTGGGCTGAGCCAGTCTGGGCGGTGCGGCCCTGAAGCAGGAAGGAGGAGTTCCCGTCTTGGGCCCCGACCAGCAGGAAGTCCCCCAGCCCATTGAAGGTGTAACTGACACCATCCAAGGTGGTGATGTGGGGGTCCCCGAACATCCAGGCTGGAAGGAAAAAAG--AGATGCTGCCTCAGCA
s ponAbe2.chr3                 199792603 333 + 202140232 CCCTCCTTCGCTCTCTTCC----------------------------------------------------------TTCTCCTCGGCCTCAGTGTGTGGCTGAAGG----------------TCCCTGT-----GGG-----------TGGAATGAAGGGAGGTCTCC-------GGCG--------------------------------------------CCCCTCACTCACCGTGACGGGG---CCCAGGCTGCTGGAGCGGTACTGAGCCGCAAAGGCGATGAAGTTGGTGGCCTGGGCTGAGCCAGTCTGGGCGGTGCGGCCCTGCAGCAGGAAGGAGGAGTTCCCGTCCTGGGCCCCGACCAGCAGGAAGTCCCCCAGCCCATTGAAGGTGTAATTGACACCATCCAAGGTGGTGATGTGGGGGTCCCCGAACATCCAGGCTGGAAGGAAAA--G--AGATGCCGCCTCAGCA
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120888558 335 + 123690457 cccttcttcgctctcttcc----------------------------------------------------------ttctcccCGGCCTCAGTATGTGGCGGAAGG----------------TCCCTGT-----GGG-----------TGGAAGGCAGGGAGGTCCCT-------GGCG--------------------------------------------CCCCTCACTCACCGTGACGGGG---CCCAGGCTGCTGGAGCGGTACCGAGCCGCAAAGGCGATGAAGTTGGTGGCCTGGGCTGAGCCAGTCTGGGCGGTGCGGCCCTGCAGCAGGAAGGAGGAGTTCCCGTCCTGGGCCCCCACCAGCAGGAAGTCCCCCAGCCCATTGAAGGTGTAATTGACACCATCCAAGGTGGTAATGTGGGGGTCCCCGAACATCCAGGCTGGAAGGAAAAAAG--AGATGCCGCCTCAGCA
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           43689 332 +    111706 CTCTTCTTCGCTGTCTTCC----------------------------------------------------------TTCTCCTCAGCCTCAGTGTGTGGCTGAAGG----------------TCCCTGT-----GGA-----------TGCAATGCAGGGAGGTCCCC--------GCG--------------------------------------------CCCCTCACTCACCGTCACGGGG---CCCAGGCTGCCAGAGCGGTACTGAGCCGCAAAGGCGATGAAGTTGGTGGCCTGGGCTGAGCCAGTCTGGGCCGTGCGGCCCTGCAGCAGGAAGGAGGAGTTCCCGTCCTGGGCCCCGACCAGCAGGAAGTCCCCCAGCCCATTGAAGGTGTAATTGACACCATCCAAGGTGGTGATGTGGGGGTCCCCGAACATCCAGGCT--GGGGAAAAAAG--AGATGCCGCCTCAGCA
i rheMac3.chrUn_JH291127       C 0 I 327
s macFas5.chr2                     78918 332 + 192460366 CTCTTCTTCGCTGTCTTCC----------------------------------------------------------TTCTCCTCAGCCTCAGTGTGTGGCTGAAGG----------------TCCCTGT-----GGA-----------TGCAATGCAGGGAGGTCCCC--------GCG--------------------------------------------CCCCTCACTCACCGTCACGGGG---CCCAGGCTGCCAGAGCGGTACTGAGCCGCAAAGGCGATGAAGTTGGTGGCCTGGGCTGAGCCAGTCTGGGCCGTGCGGCCCTGCAGCAGGAAGGAGGAGTTCCCGTCCTGGGCCCCGACCAGCAGGAAGTCTCCCAGCCCATTGAAGGTGTAATTGACACCATCCAAGGTGGTGATGTGGGGGTCCCCGAACATCCAGGCT--GGGGAAAAAAG--AGATGCCACCTCAGCA
i macFas5.chr2                 C 0 I 17
s chlSab2.chr15                   427021 306 -  91754291 ---GTCTTCGCTGTCTTCC----------------------------------------------------------TTCTCCTCAGCCTCAGTATGTGGCTGA---------------------------------------------------------AGGTCCCC--------GCG--------------------------------------------CCCCTCACTCACCGTCACGGGG---CCCAGGCTGCCAGAGCGGTACTGGGCCGCAAAGGCGATGAAGTTGGTGGCCTGGGCTGAGCCAGTCTGGGCGGTGCGGCCCTGCAGCAGGAAGGAGGAGTTCCCGTCCTGGGTCCTGACCAGCAGGAAGTCCCCCAGCCCATTGAAGGTGTAATTGACACCATCCAAGGTGGTGATGTGGGGGTCCCCGAACATCCAGGCTGGGGGGAAAAAAG--AGATGCTGCCTCAGCA
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   944995 339 -  74750902 CCCTTCTTTCTCCTCTTCC----------------------------------------------------------TTCTCCTGGGCCTCAATATCCGGCTGAAGGTG-----------AAATGCCTGT-----GGG-----------TGAAATGCAGG-AGGTCCCA-------GGTG--------------------------------------------CCCCTCACGAACCGTGACGGGG---CCCAGGCTGCTGGAGCGGTACTGAGCAGCAAAGGCAACGAAGTTGGTGGCCTGGGCTGAGGCGGTCTGGGCGGTGCGGCCCTGCAGCTGGAAGGAGGAGTTCCCGTCCTGGGCCTGGACCAGCAGGAAGTCCCCCAGCCCATTGAAGGTGTAATTCACACCGTCTAAGGTGGTGATGTGGGGGTCCCCGATCATCCAGGCTGGAAGGAAAAAAG--AGATACCACATCAGCA
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65440155 335 -  98207768 CCTTTCTTTGTACTCTTCC----------------------------------------------------------TTTTC--------CAGTGTCCAGCTGACGG----------------TCTCTAA-----GGGGTTCTGGGGAAGGGATTGCAAGGATACCCTA-------GGTA--------------------------------------------CCCCTCACTTACCGTGATGGGAGACTTCAGGCTGCTGGTGTTGTATTGAGCCGCAAAGGCAATGAAGTTAGTGGCCTTGGCAGTGCCAGTCTGGGCAGTGCGGCCTTCCAGCAGGAAGGAAGAATTTCTGTCCTGGGCCTGGACCAGCAGAAAGTCTCCCAGCCCGTTGAAGGTGAAGTTGGCATTATCCAAAGTGGTGATGTGGGGATCACCAAATGTCCAAGCTAAAAGAAAGGAGGTTACATGCTA--------
i mm10.chr16                   I 1009 C 0
s canFam3.chr33                 29075546 455 +  31377067 --ctctctctgtgtctctcatgaataaataaataaaatcttaagaaaagaaaagtgaggcactggaaggtcagtagttcctccaggatcaca-----cggctgatggagccatgacccaaaTGGCACCGTTCATAGGG-----------TCGACTCTCGAGGTGTCCCCCGCCCCCGGCACCCCCTCCCTCTGCTCCCTCTGCCTCCTCCCCTCCTTGGAGCACCCCCTGGCTCACCGTGACGGGG---CTCAGGCTGCGGGCCTCATAGCTCGCTGCAAAGGCAATGAAGTTGGTGGCCCGGGCGGAGCCGGTCTGGGCGGTGCGACCCAGCAGCAGGAAGGAGGAGTTTCCGTCCCAGGCCCGGACCAGCTGGAAGTCACCCAGCCCATTGAACGTGTAATTGGCACCGTCCAAGGTGGTGATGTGGGGGTCCCCAAACATCCAGGCTGGAAG---AAAGG--AGAGGCCACGCTGGCG
i canFam3.chr33                C 0 C 0
e papAnu2.chr2                     74305 365 - 187378091 I
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=6741.000000
s hg38.chr3_KI270935v1_alt        134169 15 +    197351 TGACAAATCATGTGT
s ponAbe2.chr3                 199792936 15 + 202140232 TGACAAATCATGCGT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120888893 15 + 123690457 TGACAAATCATGCGT
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     79267 15 + 192460366 TGACAAACCAAGTGC
i macFas5.chr2                 I 17 C 0
s chlSab2.chr15                   427327 15 -  91754291 TGACAAACCAAGTGC
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   945334 15 -  74750902 TGACACACCATGGGT
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65440490  7 -  98207768 -GCCAATT-------
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29076001  7 +  31377067 CGGCTGG--------
i canFam3.chr33                C 0 C 0
e rheMac3.chrUn_JH291127           44021 327 +    111706 I
e papAnu2.chr2                     74305 365 - 187378091 I
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=38266.000000
s hg38.chr3_KI270935v1_alt        134184 25 +    197351 AGGGCTGAGGTTCCTCACTGCAGTC
s ponAbe2.chr3                 199792951 25 + 202140232 AGGGCCGAGGTTCCTCCCTGCAGTC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120888908 25 + 123690457 AGGGCTGAGATTCCTCACTGCAGTC
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     79282 25 + 192460366 CCGGCTGAGATTCCTCACTGCAGTC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     74670 25 - 187378091 AGGGCTGAGATTCCTCATTATAGTT
i papAnu2.chr2                 I 365 C 0
s chlSab2.chr15                   427342 25 -  91754291 CCGGCTGAGATTCCTCACTGCAGTC
i chlSab2.chr15                C 0 I 314
s calJac3.chr17                   945349 25 -  74750902 TGGGCTGAGATTCCTCACTGCAGTC
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65440497 25 -  98207768 AGGGCCATGGACTCTTACTCCCAGC
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29076008 15 +  31377067 CGGGGTGCGGATCCC----------
i canFam3.chr33                C 0 C 0
e rheMac3.chrUn_JH291127           44021 327 +    111706 I
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=-14778.000000
s hg38.chr3_KI270935v1_alt        134209 16 +    197351 AGG---TGCGGCACTTGTC
s ponAbe2.chr3                 199792976  2 + 202140232 GG-----------------
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120888933  2 + 123690457 AG-----------------
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     79307 14 + 192460366 --CG--GGGGGCACCTGT-
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     74695 14 - 187378091 --gg--gggggCACCTGT-
i papAnu2.chr2                 C 0 C 0
s calJac3.chr17                   945374 15 -  74750902 ---AGATAGGGCACTTGT-
i calJac3.chr17                C 0 I 1
s mm10.chr16                    65440522  5 -  98207768 --------AGGTA------
i mm10.chr16                   C 0 C 0
e rheMac3.chrUn_JH291127           44021 327 +    111706 I
e canFam3.chr33                 29076023  0 +  31377067 C
e chlSab2.chr15                   427367 314 -  91754291 I
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=11038.000000
s hg38.chr3_KI270935v1_alt        134225 11 +    197351 CAGGAGGACTC
s macFas5.chr2                     79321 11 + 192460366 CAGGTGGACTC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     74709 11 - 187378091 CAGGTGGACTC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   427681 11 -  91754291 CAGGTGGACTC
i chlSab2.chr15                I 314 C 0
s calJac3.chr17                   945390 11 -  74750902 CAGGTGGACTC
i calJac3.chr17                I 1 T 51
s mm10.chr16                    65440527  7 -  98207768 ----AGGACTT
i mm10.chr16                   C 0 C 0
e rheMac3.chrUn_JH291127           44021 327 +    111706 I
e canFam3.chr33                 29076023  0 +  31377067 C
e ponAbe2.chr3                 199792978  0 + 202140232 C
e nomLeu3.chr11                120888935  0 + 123690457 C
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=3426.000000
s hg38.chr3_KI270935v1_alt        134236 4 +    197351 AGGG
s macFas5.chr2                     79332 4 + 192460366 AGGG
i macFas5.chr2                 C 0 I 151
s papAnu2.chr2                     74720 4 - 187378091 AGGG
i papAnu2.chr2                 C 0 I 1
s chlSab2.chr15                   427692 4 -  91754291 AGGG
i chlSab2.chr15                C 0 I 1
s calJac3.chr17                   945350 3 -  74750902 -GGG
i calJac3.chr17                T 51 I 1
e rheMac3.chrUn_JH291127           44021 327 +    111706 I
e mm10.chr16                    65440534 0 -  98207768 C
e canFam3.chr33                 29076023 0 +  31377067 C
e ponAbe2.chr3                 199792978 0 + 202140232 C
e nomLeu3.chr11                120888935 0 + 123690457 C
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=6706.000000
s hg38.chr3_KI270935v1_alt        134240 28 +    197351 TGAGGTTCCTCACTGCAGTCGACTGGGG
s ponAbe2.chr3                 199792978  6 + 202140232 ----------------------CTGGGG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120888935  6 + 123690457 ----------------------GTGCGG
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     79487 28 + 192460366 TGGGATTCCTCACTGTAGTCAGGGGGGA
i macFas5.chr2                 I 151 C 0
s papAnu2.chr2                     74725 28 - 187378091 TGGGATTCCTCACTGTAGTCAGGGGGGA
i papAnu2.chr2                 I 1 C 0
s chlSab2.chr15                   427697 28 -  91754291 TGGGATTCCTCACTGTAGTCAGGGGGGA
i chlSab2.chr15                I 1 C 0
s calJac3.chr17                   945354 28 -  74750902 TGAGATTCCTCACTGCAGTCAGATAGGG
i calJac3.chr17                I 1 C 0
s mm10.chr16                    65440534 19 -  98207768 ---------CCATCTTAGTTGGCTAGAG
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29076023 14 +  31377067 ---AGCCCCCCACGGCC-----------
i canFam3.chr33                C 0 C 0
e rheMac3.chrUn_JH291127           44021 327 +    111706 I
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=41114.000000
s hg38.chr3_KI270935v1_alt        134268 18 +    197351 CACTTGTCCGGGCGGACT
s ponAbe2.chr3                 199792984 18 + 202140232 CACTTGTCCAGGCCGACT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120888941 18 + 123690457 CACTTGTCCAGGCGGACT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           44348 18 +    111706 CACTTGTCCAGGTGGACT
i rheMac3.chrUn_JH291127       I 327 C 0
s macFas5.chr2                     79515 18 + 192460366 CACTTGTCCAGGTGGACT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     74753 18 - 187378091 CACTTGTCCAGGTGGACT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   427725 18 -  91754291 CACTTGTCCAGGTGGACT
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   945382 18 -  74750902 CACTTGTCCAGGTGGACT
i calJac3.chr17                C 0 I 1
s mm10.chr16                    65440553  1 -  98207768 ----------------C-
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29076037 12 +  31377067 ------TCCAGGCCAACT
i canFam3.chr33                C 0 C 0
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=1061571.000000
s hg38.chr3_KI270935v1_alt        134286 420 +    197351 -CAGCTGGGGAGATGTTCACAGAGCACAGAATCCTCCCCTCAAGCCTCCTTGCATTTTCGTGCC---CCGCTATTCTCACTCCTTCCCCAAC-TCAGGTACAAAGCCCCTCCACTGACCATCCA-CCCATCACTGGCGTCATCTCCATC-TTCCCTTGTGGCCACAGCTCTGCCCCTACTCCTTATCCAGATGCCACCTCCCGGAAGCCCAGAAGCTCCCCCTCCCCAGAGGCTCTTCCTGGGCCTGGGCCCTGTCGCTCACCGGGCTGTGGGGGCCTGTATGTAGCACAGCCCACGTGGGGCCGCCTCTGCTGGTACAGGGCACAGAGGTAGGGCTTGTCATTCCAGCGGCAGCACCAGCTCTGTGGCTCCAGTTCCTGGGCTGCGGAGAACAGCA-GTGAGTCGGGGAGGTTGAGGACCTGGAGAA
s ponAbe2.chr3                 199793002 405 + 202140232 -CAGCTGGGGAGATGTTCACGGAGCACAGAATCCTCCCCTCAAGCCTCCTTGCATTTTCGTGCC---CCGCTATTCTCACTCCTTCCCCAAC-TCAGGTACAAAGCCCCTCCGCTGACCGTCCG-CCCATCACTGGCGTCATCTCCATC-TTCCCTTGTGGCCACAGCTCTGCTCCTACTCCTCATCCAGACGCCACCTCCCGGAAGCCCAGAAGGTCCCCCTCCCCAGAGGCTCTTCCTGGGCCTGGGCCCTGTCGCTCACCGGGCCGTGGGGGCCTGTATGTAGCACAGCCCATGCGGGGCCGCCTCTGCTGGTACCGGGCACAGAGGTAGGGCTTGTCACTCCAGCGGCAGCACCAGCTCTGCGGCTCCAGTTCCTGGGCTgcagggcagggcg-gtgagttgg--------------tggag-a
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120888959 417 + 123690457 -CAGCTGGG--GATGTTCAGAGAGCACAGAATCCTCCCCTCAAGGCTTCTTGCA-TTTCATGCC---CCGCTACTCTCACTCCTTCCCCAAC-TCAGGTACAAAGCCCCTCCACTGACCGTCCG-CCCATCACTGGCGTCATCTCCATC-TTCCCTTGTGGCCACGGCTCTGCCCCTACTGCTCATCCAGACGCCACCTCCTGGAAGCCCAGAAGCTCCCCCTCCCCAGAGGCTCTTCCTGGGCCTGGGCCCTGTCACTCACCAGGCCGTGGGGGCCTGTATGTAGCACAGCCCACGCGGGGCCGCTTCTGCTGGTACAGGGCACAGAGGTAGGGCTTGTCATTCCAGCGGCAGCACCAGCTCTGCGGCTCCAGTTCCTGGGCTGCGGAGAAGAGCA-GTGAGCTGGGGAGGCTGAGGACCTGGAGAA
i nomLeu3.chr11                C 0 I 6
s rheMac3.chrUn_JH291127           44366 421 +    111706 -CAGCAGGGGAGATGTTCACGGAGCACAGATTCCTCCCCTCAAGGCTCCTTGCCCTTTTGTGCC---CCACTATTCTCACTCCTTCCCCAACACCAGGTACAAAGCCCCTCCGCTGGCCGTCCG-CCCATCACTGGCGTCATCTCCATC-TTCCCTTGTGGCCACAGCTCTGCCCCTACTCCTCATCCAGATGCCACCTCCTGGAAGCCCAGAAGCTCCCCCTCCCCAGAGGCTCTGCCTGGGCCTGGGCCCTGAGGCTCACCAGGCCGTGGGGGTCTGTATGTAGCACAGCCCACGCGGGGCCGCCTCTGCTGGTACAGGGCACAGAGGTAGGGCTTGTCATTCCAGAGGCAGCACCAGTTCTGCGGTTCCAGTTCCGGGGCTGCAGAGAGGAGCA-GTGAGTCGGTGAGGCTGAGGACCTGGAGGA
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     79533 421 + 192460366 -CAGCAGGGGAGATGTTCACGGAGCACAGATTCCTCCCCTCAAGGCTCCTTGCACTTTTGTGCC---CCACTATTCTCACTCCTTCCCCAACACCAGGTACAAAGCCCCTCCACTGGCCGTCCG-CCCATCACTGGCGTCATCTCCATC-TTCCCTTGTGGCCACAGCTCTGCCCCTACTCCTCATCCAGATGCCACCTCCTGGAAGCCCAGAAGCTCCCCCTCCCCAGAGGCTCTGCCTGGGCCTGGGCCCTGAGGCTCACCAGGCCGTGGGGGTCTGTATGTAGCACAGCCCACGCGGGGCCGCCTCTGCTGGTACAGGGCACAGAGGTAGGGCTTGTCATTCCAGAGGCAGCACCAGTTCTGCGGTTCCAGTTCCGGGGCTGCAGAGAGGAGCA-GTGAGTCGGGGAGGCTGAGGACCTGGAGGA
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     74771 409 - 187378091 -CAGCAGGGGAGATGTTCACGGAGCACAGATTCCTCCCCTCAAGGC------------TGTGCC---CCACTATTCTCACTCCTTCCCCAACACCAGGTACAAAGCCCCTCCACTGGCCGTCCG-CCCATCACTGGCGTCATCTCCATC-TTCCCTTGTGGCCACAGCTCTGCCCCTACTCCTCATCCAGACGCCACCTCCTGGAAGCCCAgaagctccccctccccagaGGCTCTGCCTGGGCCTGGGCCCTGAGGCTCACCAGGCCGTGGGGGTCTGTATGTAGCACAGCCCACGCGGGGCCGCCTCTGCTGGTACAGGGCACAGAGGTAGGGCTTGTCATTCCAGAGGCAGCACCAGTTCTGCGGTTCCAGTTCCGGGGCTGCAGAGAAGAGCA-GTGAGTCGGGGACGCTGAGGACCTGGAGGA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   427743 421 -  91754291 -CAGCAGGGGAGATGTTCACGGAGCACAGATTCCTTCCCTCAAGGCTCCTTGCACTTTTGTGCC---CCACTATTCTCACTCCTTCCCCAACACCAGGTACAAAGCCCCTCCACTGGCCGTCCG-CCCATCACTGGCGTCATCTCCATC-TTCCCTTGTGGCCACAGCTCTGCCCCTACTCCTCATCCAGATGCCACCTCCTGGAAGTCCAGAAGCTCCCCCTCCCCAGAGGCTCTGCCTGGGCCTGGGCCCTGACGCTCACCAGGCCGTGGGGGTCTGTATGTAGCACAGCCCACACGGGGCCGCCTCTGCTGGTACAGGGCACAGAGGTCAGGCTTGTCATTCCAGAGGCAGCACCAGCTCTGCGGTTCCAGTTCCGGGGCTGCAGAGAAGAGCA-GTGAGTCAGGGAGGCTGAGGACCTGGAGGA
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   945401 412 -  74750902 -CAGCTGGGGAGATGTTC-----TCATCGAATCCTCCCCTCAAGGC-CCCTGCACTTTCGTGCC---CC-CCATTCTCACTCCTTCTCCAGCACCAGGTACAAAGGGCCTCCATTTGCCATCAGCCCCATCACTGGCACCCTCTCCATCTTTCCCTTGTGGCCACAGCTCTGCCCCTACTCCTCATTCAGACGTCA--TCCCGGAGGCCCAGAAGCT-CCCCTCCCCAGATGCTCTGCCTGAGCCT-GGCCCTGACCCTCACCGGGCCGTGGTGGCCTGTATGCAGCGCAGCCTACTCGGGGCCGCCTCTGCTGGTACAGGGCACAGAGGTAGGGCTTGTCATTCCAGCGGCAGCACCAGCTCTGCGGCTCCAGTTCCTGGGCTGTGGAGAAGAGCA-GTGAGTCGGGGAGGCCGAGGACCTGGAGAT
i calJac3.chr17                I 1 I 4
s mm10.chr16                    65440554 374 -  98207768 ----TTGGGCAAATTCTCCAGGCATCCAGAATCTACCCCCAAAGTCCTCTTCCCTTGTAGTCCCTGGCCTCAGTCCTCATCCCTTTGCAAAAGCCATGTCCAAAGTCCCT--GTTTGCTGTTAG-CTTCACGCAAGACCTGTCAACATC-ATCCC-TGTGGCTGCAGTTCTG---------TTTAGGAAGTTGGCCCCTT--------------GCTAATCCACCCCA--------------------ACCATGATGCTCACCGGGCCGTGGGGGCCTGTACCCAGCACAGCTGACACGGGGCCGCCTAAGCTGGTACCAGACACAGAACGAGGGCTTGTCGTTCCATTGGCAGCACCAGTTCTGTGCCTCCTGCTCCTCATCTGTGAAGAAGGACA-GTTTGTCAGAG-GGCGGGGGCCCCGGGGAA
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29076049 314 +  31377067 CAGGCCCGCGAGATGCTCACGGAGTAGAGAA---------------------------CATCCC------------------------------------CAAAgcgccccc---------ccc-cccggcgcccAAGTCA----CATC-TACGGTTGC--------TTCGGCCCCC--------TCCCGGTGCCACCCAC--AAGGCCCCTCGGTTGGGCCCCACC----GCCCTGCCCAGG--------------CTCACCGGGCCTCGGGGGCCGGTACCCGGCGCAGCCCACGCGGGGCCGCCTCTGCTGGTACAGGGCGCAGAGCATGGGCCGGTCGCTCCAGCGGCAGCACCAGTTCTGGGGCTCCAGTTCTCGGCCTGTGGGGGAGAGCACATGTTGCGGGGAGACGCAGGACCTGCAGCA
i canFam3.chr33                C 0 C 0
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=-1014.000000
s hg38.chr3_KI270935v1_alt        134706 44 +    197351 GCTTGGCAGGGCAGGGT--GGTGTTGGTTGAGAGCTTGGCAGGGCA
s ponAbe2.chr3                 199793407 46 + 202140232 gcttggcagggcagggtggggtgttggtggagagcttggcagggca
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chrUn_JH291127           44787 23 +    111706 ---------------------CCCAGCCGGAGAGCTGGGT--GGCA
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     79954 23 + 192460366 ---------------------CCCAGCCGGAGAGCTGGGT--ggca
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     75180 22 - 187378091 ---------------------CCCAGCCGGAGAGC-GGGT--GGCA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   428164 20 -  91754291 ---------------------CCCAGCCGGAGAGCTGGGT--G---
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   945817 21 -  74750902 -------------------------GCTGGAGAGCGTGGCAGGGCA
i calJac3.chr17                I 4 C 0
s mm10.chr16                    65440928 24 -  98207768 ----------------------GCAACTGGCATGTTTGGAAGAGTA
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29076363 20 +  31377067 ---------------------CCCAGCTGGGGGTTTGGGCA-----
i canFam3.chr33                C 0 C 0
e nomLeu3.chr11                120889376  6 + 123690457 I
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=19056.000000
s hg38.chr3_KI270935v1_alt        134750 31 +    197351 GGGCGGTGTTGGTGGAGAGCTTGGCAGGGCA
s ponAbe2.chr3                 199793453 31 + 202140232 ggacggtgttggtggagagcttggcagggca
i ponAbe2.chr3                 C 0 I 351
s rheMac3.chrUn_JH291127           44810 24 +    111706 GGGTGGGGTCAGTGGAGAGCTTGG-------
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     79977 24 + 192460366 gggcggggtcagtgaagagcttgg-------
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     75202 24 - 187378091 GGGCAGGGTCAGTGGAGAGCTTGG-------
i papAnu2.chr2                 C 0 C 0
s calJac3.chr17                   945838 24 -  74750902 GGACGGTGTTGCTGAAGAGCATGG-------
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65440952 19 -  98207768 TGGTGATATCAGCAGCAAG------------
i mm10.chr16                   C 0 C 0
e canFam3.chr33                 29076383  0 +  31377067 C
e chlSab2.chr15                   428184  0 -  91754291 C
e nomLeu3.chr11                120889376  6 + 123690457 I
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=6528.000000
s hg38.chr3_KI270935v1_alt        134781 31 +    197351 GGGCGGTGTTGGTGGAGAGCTTGGCAGGGCA
s ponAbe2.chr3                 199793835 31 + 202140232 GGGCGGTGTTGGTGGAGAGCTTggcagggca
i ponAbe2.chr3                 I 351 C 0
s rheMac3.chrUn_JH291127           44834 10 +    111706 ---------------------TGGCAGGGCA
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     80001 10 + 192460366 ---------------------tggcagggca
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     75226 10 - 187378091 ---------------------TGGCAGGGCA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   428184  5 -  91754291 --------------------------GGGCA
i chlSab2.chr15                C 0 C 0
s mm10.chr16                    65440971 17 -  98207768 --------------AGGAGTCAGGCGTGGCA
i mm10.chr16                   C 0 I 58
e canFam3.chr33                 29076383  0 +  31377067 C
e calJac3.chr17                   945862  0 -  74750902 C
e nomLeu3.chr11                120889376  6 + 123690457 I
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=12568.000000
s hg38.chr3_KI270935v1_alt        134812 12 +    197351 GGGC-----GGTGTTGG
s ponAbe2.chr3                 199793866 17 + 202140232 gggcagggcggtgttgg
i ponAbe2.chr3                 C 0 C 0
s rheMac3.chrUn_JH291127           44844 12 +    111706 GGGC-----AGTGTCGG
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     80011 12 + 192460366 gggc-----agtgtcgg
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     75236 12 - 187378091 GGGC-----AGTGTCGG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   428189 12 -  91754291 GGGC-----GGTGTTGG
i chlSab2.chr15                C 0 C 0
e mm10.chr16                    65440988 58 -  98207768 I
e canFam3.chr33                 29076383  0 +  31377067 C
e calJac3.chr17                   945862  0 -  74750902 C
e nomLeu3.chr11                120889376  6 + 123690457 I
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=73468.000000
s hg38.chr3_KI270935v1_alt        134824 41 +    197351 TGGAGAGCTTGGTAGGGCAGGGCGGTGTTGGTGGCAAGAGC
s ponAbe2.chr3                 199793883 41 + 202140232 tggagagcttggcagggcagggcagTGTTGGTGGCAAGAGC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120889382 41 + 123690457 TGGAGAGCTTGGCAGGGCAGGGCGGTGTTGGTGGCAAGAGC
i nomLeu3.chr11                I 6 C 0
s rheMac3.chrUn_JH291127           44856 41 +    111706 TGGAGAGCTGGGTAGGACGGGGTGGTGTTGGTGGCAAGAGC
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     80023 41 + 192460366 tggagagctgggtaggacggggTGGTGTTGGTGGCAAGAGC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     75248 41 - 187378091 TGGAGAGCTGGGTAGGACGGGGTGGTGTTGGTGGCAAGAGC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   428201 41 -  91754291 TGGAGAGCTGGGTggggcagggtggtgttggtggcaagagc
i chlSab2.chr15                C 0 C 0
e mm10.chr16                    65440988 58 -  98207768 I
e canFam3.chr33                 29076383  0 +  31377067 C
e calJac3.chr17                   945862  0 -  74750902 C
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=61943.000000
s hg38.chr3_KI270935v1_alt        134865 29 +    197351 ATGGCTTTGGAATCCAGCATGGCCCTTCT
s ponAbe2.chr3                 199793924 29 + 202140232 ATGGCTTTGGAATCCAGCATGGCCCTTCT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120889423 29 + 123690457 ATGGCTTTGGAATCCAACGTGGCCCTTCT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           44897 28 +    111706 ATGGCTTTGGAATCCAGCACGGCCC-TCT
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     80064 28 + 192460366 ATGGCTTTGGAATCCAGCACGGCCC-TCT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     75289 28 - 187378091 ATGGCTTTGGAATCCAGCACGGCCC-TCT
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   428242 28 -  91754291 atggctttggaatccagcaCAACCC-TCT
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   945862 25 -  74750902 ----CTTTGGAATGCAGCATGGCCCTTCT
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29076383 29 +  31377067 ACGGCGCCGGACTCGGGTCCTGCCCTGCT
i canFam3.chr33                C 0 C 0
e mm10.chr16                    65440988 58 -  98207768 I
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=452418.000000
s hg38.chr3_KI270935v1_alt        134894 214 +    197351 -CA-TGACCTTGGGCAGTGAATAGGGTGCTGTCTCTTTTGCAGGC--ATTGGGGCCACTGTGCAGCAGG-------GCGCATGGTAGGAGCTAAGCAAATTTCCTGTCTTGAGGGTGGAGAGCCAAGTACTGCTGCTCTCAACGTGCTGGGAGTGGGGAGGGCACGGCTGACGGTCTGGGAACTGTGGAAACTGCCATGG-------------------GACGGGGGAGAGAACGGGAGGACAC--
s ponAbe2.chr3                 199793953 212 + 202140232 -CA-TGACCTTGGGCAGTGGACAGGGTGCTGTCTCTTTTGCAG-C--ATGGGGGCCACTGTGCAGCAGG-------GCGCATGGTAGCAGCTAAGCAAATT-CCTGTGTTGAGGGTGGAGAGCCAAGTACTGCTGCTCTCAACGTGCTGGGAGTGGGGAGGGCACGGCTGACAGTCTGGGAACTGTGGAAACTGCCACGG-------------------GACAGGGGAGAGAAGGGGAGGACAC--
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120889452 211 + 123690457 -CG-TGACCTTGGGCAGTGGACAGGGTGCTGTCTCTTTTGCAGGC--ATTGGGGCCACTGTGCAGCAGG-------GCGTATGGTAGGAGCTAAGCAAATT---CGTCTTGAGGGTGGAGAGCCAAGTACTGCTGCTCTCAATGGGCTAGGAGTGGGGAGGGCATGGCTGACAGTCTGGGAACTGTGGAAACTGCCGTGG-------------------GACAGGGGAGAGAAGGGGAGGACAC--
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           44925 214 +    111706 -CG-TGACCCTGGGCAGTGGACAGGGTGCTGTCTCTTTTTCAGGC--ACTGGGGCCACTGTGCAGCAGG-------GTGCATGGTAGGGGATAAGCAGATTTCCTGTCCTGAGGGTGGACAGCCAAGTACTGACACTCTCAACATAATGGGAGTGTGGAGGGCACGGCTGACAGTCAGGGAACTGTGGAAACTGCCAAGG-------------------GACAGGGGAGAGAACGGGAGGACAC--
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     80092 214 + 192460366 -CG-TGACCCTGGGCAGTGGACAGGGTGCTGTCTCTTTTTCAGGC--ACTGGGGCCACTGTGCAGCAGG-------GTGCATGGTAGGGGATAAGCAGATTTCCTGTCCTGAGGGTGGACAGCCAAGTACTGACACTCTCAACATAATGGGAGTGGGGAGGACACGGCTGACAGTCAGGGAACTGTGGAAACTGCCAAGG-------------------GACAGGGGAGAGAACGGGAGGACAC--
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     75317 214 - 187378091 -CA-TGACCCTGGGCAGTGGACAGGGTGCTGTCTCTTCTGCAGGC--ACTGGGGCCACTGTGCAGCAGG-------GTGCATGGTAGGGGATAAGCAGATTTCCTGTCCTGAGGGTGGACAGCCAAGTACTGACACTCTCAACATaatgggagtggggagggcaTGGCTGACAGTCAGGGAACTGTGGAAACTGCCAAGG-------------------GACAGGGGAGAGAATGGGAGGACAC--
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   428270 205 -  91754291 -CG-TGACCCTGGGCAGTGGACAGGGTGCTGTCTCTTT--CAGGC--ACTGGGGCCACTGTGCAGCAGG-------GCGCATGGTAGG-----AGCAGATTTCCTGTCTGGAGGGTGGACAGCCAAGTACTGACGCTCTCAACGTGCTGGGAGTGGGGAGGGCATGGCTGACAGTCAGGGAAC--GGGAAACTGCCAAGG-------------------GACAGGGGAGAGAACGGGAGGACAC--
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   945887 214 -  74750902 -CATTGACCTTGTGCGGTGGACAGGGCGCTGTCTCTTTTGCAGGC--ATTGGGG-GACTGTGCAGCAGA-------GCACATGGTAGGAGCTAAGCACATTTCCTTTCTTGAGGGTGGAGAGCCAAGAACCACCGCCCTCAACATGCTGGGAGTGGGGAGGGTGCGGCTGACAGTCCAGGAACTGTGGAAACTGCCATGG-------------------GACGGGTGAGAGAACGAGAGGACAC--
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65441046 136 -  98207768 -TA-TGTCCTCGTTGAACGAATGG-------------------------TGGGGTTATTACATAGCA------------CATAGTA-------------------------------------CAAG--------CCCTCAGAGAGCCAGCAGAAGGGAGAACAGAGATGATGGCATGAAGATACGAGAGACT-----AG-------------------AGCAGTCCCCAGGGTGGGCAGATGC--
i mm10.chr16                   I 58 C 0
s canFam3.chr33                 29076412 239 +  31377067 TGG-TAACCTCGGGCCGTGGACCGGTCACCATCTCCCTCGCACGCTTGCTGGGGCAGCAAAGCCCCAGGGGCCCGAGCTCGTGGCTGTGGCTAAGGGGCTTGCTTTCTTGAAGGGTGGCGG--TGGGTCCCCCTGCCCCCAAAGTGC-AGGAGCG-GGAGGGTATGACCGCCAGTCTGGGGACCCTGGAGGCTGCTGTGATGGCCGGGGGCAGAGCAGTGGCAGGGGGTGGAA--GGAGGACCCAC
i canFam3.chr33                C 0 I 122
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=649886.000000
s hg38.chr3_KI270935v1_alt        135108 233 +    197351 AGACCA-------------------------CGTGACCCCA--CACCCCTGCGCTCTCCAGCTCCCTTGGAGCGTCTCTGTGG-GAGCTGACTCTCAGTCTTCCCCC--AAACATCCTGCTCATCTGGGTCTACAGGGACGGGGTCAGCCTAGGCGCTCTCTTCTTGCCTGGAGAAATGGCCCCACTCTGGCCTGGGGATGTGGAGCCAGGTATAGAGATGAGGAAAGAGGCTCTCAGCtcatacatcccc-gaatgtccgctg
s ponAbe2.chr3                 199794165 233 + 202140232 AGACCA-------------------------CGTGACCCCA--CACCCCTGCGCTCTCCAGCTCCCTTGGAGCGTCTCTGTAG-GAGCTGACTCTCAGTCTTCCCCC--AAACATCCTGCTCATCTGGGTCTACAGGGACGGGGTCAGCCTAGGCGCTCTCTTCTTGCCTGGAGAGATGGCCCCACTCTGGCCTGGGGATGCGGAGCCAGGTATAGAGATGGGGAAAGAGGCACTCAGCtcatacatcccc-gaatgtccgctg
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120889663 233 + 123690457 GGACCA-------------------------CGTGACCCCA--CACCCCTGCGCTCTCCAGCTCCCTTGGAGGGTCTCTGTGG-GAGCTGACTCTCAGTCTTCCCCC--AAACATCCTGCTCATCTGGGTCTACAGGGACGGGGTCAGCCTAAGCGCTCTCCTCCTGCCTGGAGAGATGGCCCCAGTCTGGCCTGGGGATGCGGAGCCAGGTATAGAGATGGGGAAAGAGGCACTCAGCtcatacatctcc-gaatgtctgctg
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           45139 232 +    111706 AGACCA-------------------------CGTGA-CCCA--CGCCCCTGCGCTCTGCAGCTCCCTTGGAGGGTCTCTGCGG-GAGCTGATTCTCAGTCTTCCCCC--AAACATCCTGCTCATCCGGGTCTACAGGGACAGGGTCAGCCTAGGTGCTCTCTTCTTGCCTGGAGAGATGGCCCCACTCTGGCCTAGGGATGCGGAGCCAGGTACGGAGATGGGCAAAGAGGCACTCAGCTCACACatcccc-gaatgtccgctg
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     80306 232 + 192460366 AGACCA-------------------------CGTGA-CCCA--CGCCCCTGTGCTCTGCAGCTCCCTTGGAGGGTCTCTGCGG-GAGCTGATTCTCAGTCTTCCCCC--AAACATCCTGCTCATCCGGGTCTACAGGGACAGGGTCAGCCTAGGTGCTCTCTTCTTGCCTGGAGAGATGGCCCCACTCTGGCCTAGGGATGCGGAGCCAGGTACGGAGATGGGCAAAGAGGCACTCAGCTCACACATCCCC-GAATGTCCGCTG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     75531 232 - 187378091 AGACCA-------------------------CGTGA-CCCA--CACCCCTGTGCTCTGCAGCTCCCTTGGAGGGTCTCTGCGG-GAGCTGATTCTCAGTCTTCCCCC--AAACATCCTGCTCATCCGGGTCTACAGGGACAGGGTCAGCCTAGGCGCTCTCTTCTTGCCTGGAGAGATGGCCCCACTCTGGCCTAGGGATGCGGAGCCAGGTACGGAGATGGGCAAAGAGGCACTCAGCTCACACATCCCC-GAATGTCTGCTG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   428475 232 -  91754291 AGACCA-------------------------CGTGA-CCCA--CACCCCTGTGCTCTGCAGCTCCCTTGGAGGGTCTCTGCGG-GAGCTGATTCTCAGTCTTCCCCC--AAACATCCTGCTCATCTGGGTCTACAGGGACAGGGTCAGCCTAGGCGCTCTCTTCTTGCCTGGAGAGATGGCCCCACTCTGGCCTAGGGATGTGGAGCCAGGTACGGAGATGGGCAAAGAGGCACTCAGCTCACACATCCCC-GAATGTCCGCTG
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   946101 232 -  74750902 AGACCA------------------------CCGTGACCCCT--CGTCCCTGTGTTCTCCAGCTCTGTTGGAGGGTCTCTATGG-GAGCTGACTCTCAGTCTTCCCCC--AAACAGCCTGCTCATCTGGGTCTACAGGGACAGGGTCAGACTATGTGCTCTCTTCTTGCCTGGAAAGATGACTCCACTCTGGCCTGGGGCTACGGGGCCAGGT--GGAGATGGGGAAAGAGGCACTCAGCTCATTCATCCCC-gaatgtcagctg
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65441182 225 -  98207768 AAGCCA-------------------------CCCTTTTCTATTTACCTCTGTGTACCCTGGCTCCCTTGGAAGGTCTTTATGGTGAGGTGATTCTAAGTCTTTCCCCCAAAACATCCTGTTATCATGGGACCAGA-GGATAACATCAAAGTAGGCCCTCTTCCTTGGCCTAGAAAGATT-CTCCACTTTGGGCTGAGGGCACAAGGCCAAAT--GAAGATAG---AAGACACATTCTGTCCTAA----TCT-GAGAGACTAC--
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29076773 253 +  31377067 agatcatgatctcagtgttgtgagattgagccctgg-cccc--cagccccgtgctCTCTGGCTCTTCTGGAAGGTCTCTGTGG-GAGATGACTCCATGTCTCCCCCG--AGACAGCCAGGTAATCTGGGTCCTGAGGCACAGGGTCAGACTGGG-GCCCCCTCCTTCCCCAGA-ACATGGCCCCATTCTTGTCTGGGGCCCTGTGGCCAAGT--GAAGATGGGGCAAGAGGCACTCAA-TCATAAGTCCCTAGGATGGCAGCTG
i canFam3.chr33                I 122 C 0
e panTro4.chr3_GL389630_random     96342 2340 +    103936 I

a score=2454526.000000
s hg38.chr3_KI270935v1_alt        135341 644 +    197351 gtggggatgttggaagcttcctaac-gttacccgatcaggaagtggaggcccagagaggggaagggtctGGGAA-GGAATGAGGACGAGAGGCTTCATGCTGAGGGTCCC-CT-ACTTGGCC---------------------------------------------GGGAA--------GGT-GGGGTTGAGAT---CACGGACT--CACGCACCCAACTGCCAAGGACGCTGCACGTGCCAGCCTTCACGAAACTCTCCCCAGGGCCCGTAGCTGCAGCACACGCCTCCTCGCCAAGAGGTGAAGCTGCACAGCTGCCTACTGCCGAGGCCCCAGCGACCTGAAACAAGTCCAGTCCCACTCAGGCCCAGG---CCGGGGCTGCCAGGGGCGGGGTGGGAACAAGCA-GGGGCTGTTTC------------------------------------------------------------TGGGGA----------------------------------------------------------GAGG------------------------------CTGAGGGCGTGAGCAGAGAGGGTGGTGGGTGGGCTTGTGGGG--------------------GGCGGGAAGGAGGTGTC--ACCTATGCTGACGGGTTGGAATCGTAAGTCCCGTCGTCCCTGCTGCCAGGAACAAGGGCAGGAGACCTGGTTCCAGCCCCAGCTGGGCCACCGAGGCTGGCTCTTCAGCCACTGCAGGCACTCGAGACGGTAGTTGGGCCTTTCTTCCCGGTGTAGCCTGTAGAACTGCAGCCCTTGGAGGCCTGAGGTC-GGGGATGG---GGGGGAAAGGGCTTAT-CCAGGGC
s panTro4.chr3_GL389630_random     98682 643 +    103936 GTGGGGATGTTGGAAGCTTCCTAAC-GTTACCCGATCAGGAAGTGGAGGCCCAGAGAGGGGAAGGGTCTGGGAA-GGAATGAGGACAAGAGGCTTCATGCTGAGGGTCCC-CT-ACTTGGCT---------------------------------------------GGGAA--------GGT-GGGATTGAGAT---CACGGACT--CACGCACCCAACTGCCAAGGACGCTGCACGTGCCAGCCTTCACGAAACTCTCCCCAGGGCCCGTAGCTGCAGCACACGCCTCCTCGCCAGGAGGTGAAGCTGCACAGCTGCCTGCTGCCAAGGCCCCAGCGACCTGAAACAAGTCCAGTCCCACTCAGGCCCAGG---CTGGGGCTGCCAGGGGCGGGGTGGGAACAAGCA-GGGGCTGTTTC------------------------------------------------------------TGGGGA----------------------------------------------------------GAGG------------------------------CTGAGGGCATGAGCAGAGAGG-TGGTGGGTGGGCTTGTGGGG--------------------GGCGGGAAGGAGGTGTC--ACCTATGCTGACGGGTTGGAATCGTAAGTCCCGTCGTCCCTGCTGCCAGGAACAAGGGCAGGAGACCTGGTTCCAGCCCCAGCTGGGCCACCGAGGCTGGCTCTTCAGCCACTGCAGGCACTCGAGACGGTAGTTGGGCCTTTCTTCCCGGTGTAGCCTGTAGAACTGCAGCCCTTGGAGGCCTGAGGTC-GGGGATGG---GGGGGAAAGGGCTTAT-CCAGGGC
i panTro4.chr3_GL389630_random I 2340 C 0
s ponAbe2.chr3                 199794398 650 + 202140232 gtggggatgttggaagcttcctaacagttaccagatcaggaagtggaggcccagagaggggaagggtctGGGAA-GGAATGAGGACAAGAGGCTTCATGCTGAGGGTCCC-CT-GCTTGGCT---------------------------------------------GGGAG--------GGT-GGGGTTGAGATCTCCACAGACT--CACGCACCCAACTGCCAAGGACGCGGCACGTGCCAGCCTTCACGAAACTCTCCCCAGGGCCCGTAGCTGCAGCACACGCCTCCTCGCCAGGAGGTGAAGCTGCACAGCTGCCCGCTGCCGAGGCCCCAGCGACCTGAAACAAGTCCAGTCCCACTCAGGCCCAGG---CCAGGGCTGCCAGGGACGGAGCGGGAACCAGCA-GGGGCTGTTTC------------------------------------------------------------TGGGGA----------------------------------------------------------GAGG------------------------------CTGAGGGCGTGAGCAGAGAGGGTGGTGGGTCGGCTTGTGCGG--------------------GGCGGGAAGGAGGTGTC--ACCTATGCTGACGGGTTGGAATCGTAAGTCCCGTCGTCCCTGCTGCCAGGAACAAGGGCAGGAGACCTGGTTCCAGCCCCAGCTGGGCCACCGAGGCTGGCTCTGCAGCCACTGCAGGCACTCGAGACGGTAGTTGGGCCTTTCTTCCTGGTGTAGCCTGTAGAACTGCAGTCCTCGGAGGCCTGAGGTTGGGGGATGC---GGGGGAAAGGGCTTATCCCAGGGC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120889896 649 + 123690457 gtggggatgttggaagcttcctaat-gttaccagatcaggaagtggaggcccagagaggggaagggtctGGGAA-GGAATGAGGACAAGAGGCTTCATGCTGAGGGTCCT-CT-GCTTGGCT---------------------------------------------GGGAA--------GGT-GGGGTTGAGATCTCCACGCACT--CACGCACCCAACTGCCAAGGACGCTGCACGTGCCAGCCTTCACGAAACTCTCCCCAGGGCCCGTAGCTGCAGCACACGCCTCCTCGCCAGGATGTGAAGCTGCACAGCTGCCTGCTGCCGAGGCTCCGGCGTCCTGAAACAAGCCCAGTCCCACTCAGGCCCAGG---CCGGGGCTGCCAGGAGCGGGGCGGGAACAAGCA-GGGGCTGTTTC------------------------------------------------------------TGGGGA----------------------------------------------------------GAGG------------------------------CTGAGGGCATGAGCAGAGAGGGTGGTGGGTGGGCTTGTGGGG--------------------GGCGGGAAGGAGGTGTC--ACCTATGCTGACGGGTTGGAATCGTAAGTCCCATCGTCCCTGCTGCCAGGAACAAGGGCAGGAGACCTGGTTCCAGCCCCAGCTGGGCCACCGAGGCTGGCTCTTCAGCCACTGCAGGCACTCAAGACAGTAGTTGGGCCTTTCTTCCAGGTGTAGCCTGTAGAACTGCAGCCCTCGGAGGCCTGAGGTC-GGGGATGGG-AGGGGGGAAGGGCTTAT-CCAGGGC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           45371 732 +    111706 gtggggatgttggaagcttcctaat-gttaccagatcaggaaatggaggcccagagaggggaagggtctGGGAA-GGAATGAGGACAAGAGGCTTCACGCTGAGGGTCCC-CT-GCTTGGCT---------------------------------------------GGGAA--------GGT-GGGGTTGAGATCTCCATGGACT--CACGCACCGAACTGCCAGGGACGCTGCACGTGCCAGCCTTCACGAAACTCTCCCCACGGCCCGTAGCTGCAGCACACGCCTCCTCGCCAGGACGTGAAGCTGCAGAGCTGCCTGCTGCCGAGGCCCAAGAGACCTGAAACAAGTCCAGTCCCACTCAGGCCCAGG---CCGGGGATGCCAGGGGCGGGGCGGGAACAAGCA-GGGGCTGTTTC------------------------------------------------------------TGGGAAgagcgcgcgagcagagagggcgggaggctgagggcgcgagcagagagggcgggaggctgagggcgcgagc-------agagagggcgggaggctgagggcgcgagcagagagggtggtgggtgagcttgtgggg--------------------ggcgggaaggtggTGTC--ACCTATGCTGACGGGTTGGAATCGTAAGTCCCATCGTCCCTGCTGCCAGGAACAAGGGcaggagacctggttccagccccagctgggccactgaGGCTGGCTCTTCAGCCACTGCAGGCACTCGAGACGGTAGTTAGGCCTTTCTTCCCGGTGTAGCCTGTAGAACTGCAGCCCTCGGAGGCCTGGGGTCAGGAGATGGGGAGAGAGAAAGGGCTTAT-CCAGGGC
i rheMac3.chrUn_JH291127       C 0 I 34
s macFas5.chr2                     80538 674 + 192460366 GTGGGGATGTTGGAagcttcctaat-gttaccagatcaggaaatggaggcccagagaggggaagGGTCTGGGAA-GGAATGAGGACAAGAGGCTTCACGCTGAGGGTCCC-CT-GCTTGGCT---------------------------------------------GGGAA--------GGT-GGGGTTGAGATCTCCATGGACT--CACGCACCGAACTGCCAGGGACGCTGCACGTGCCAGCCTTCACGAAACTCTCCCCACGGCCCGTAGCTGCAGCACACGCCTCCTCGCCAGGACGTGAAGCTGCAGAGCTGCCTGCTGCCGAGGCCCAAGAGACCTGAAACAAGTCCAGTCCCACTCAGGCCCAGG---CCGGGGATGCCAGGGGCGGGGCGGGAACAAGCA-GGGGCTGTTTC------------------------------------------------------------TGGGAA----------------------------------------------------------GAGGGCGCGAGC-------AGAGAGGGCGGGAGGCTGAGGGCGCGAGCAGAGAGGGTGGTGGGTGAGCTTGTGGGG--------------------GGCGGGAAGGTGGTGTC--ACCTATGCTGACGGGTTGGAATCGTAAGTCCCATCGTCCCTGCTGCCAGGAACAAGGGCAGGAGACCTGGTTCCAGCCCCAGCTGGGCCACTGAGGCTGGCTCTTCAGCCACTGCAGGCACTCGAGACGGTAGTTAGGCCTTTCTTCCCGGTGTAGCCTGTAGAACTGCAGCCCTCGGAGGCCTGGGGTCAGGAGATGGGGAGAGAGAAAGGGCTTAT-CCAGGGC
i macFas5.chr2                 C 0 I 1
s papAnu2.chr2                     75763 673 - 187378091 GTGGGGATGTTGGAAGCTTCCTAAT-GTTACCAGATcaggaaatggaggcccagagaggggaagggtc-GGGAA-GGAATGAGGACAAGAGGCTTCATGCTGAGGGTCCC-CT-GCTTGGCT---------------------------------------------GGGAA--------GGT-GGGGTTGAGATCTCCATGGACT--CACGCACCGAACTGCCAGGGACGCTGCACGTGCCAGCCTTCACGAAACTCTCCCCACGGCCCGTAGCTGCAGCACACGCCTCCTCGCCAGGACGTGAAGCTGCAGAGCTGCCTGCTGCCTAGGCCCAAGAGACCTGAAACAAGTCCAGTCCCACTCAGGCCCAGG---CCGGGGATGCCAGGGGCAGGGCGGGAACAAGCA-GGGGCTGTTTC------------------------------------------------------------TGGGAA----------------------------------------------------------GAGGGCGCGAGC-------AGAGAGGGCGGGAGGCTGAGGGCGCGAGCAGAGAGAGTGGTGGGTGAGCTTGTGGGG--------------------GGCGGGAAGGTGGTGTC--ACCTATGCTGACGGGTTGGAATCGTAAGTCCCATCGTCCCTGCTGCCAGGAACAAGGGCAGGAGACCTGGTTCCAGCCCCAGCTGGGCCACTGAGGCTGGCTCTTCAGCCACTGCAGGCACTCGAGACGGTAGTTGGGCCTTTCTTCCCGGTGTAGCCTGTAGAACTGCAGCCCTCGGAGGCCTGGGGTcaggagatggggagagagaaagggcttat-ccagggc
i papAnu2.chr2                 C 0 I 1
s chlSab2.chr15                   428707 645 -  91754291 GTGGGGATGTTGGAagcttcctaat-gttaccagatcaggaaatggaggcccagagaggggaagggtctGGGAA-GGAATGAGGACAAGAGGCTTCATGCTGGGGGTCCC-CT-GCTTGGCT---------------------------------------------GGGAA--------GGT-GGGGTTGAGATCTCCATGGACT--CACGCACCGAACTGCCAGGGATGCTGCACATGCCAGCCTTCACGAAACTCTCCCCACGGCCCGTAGCTGCAGCACACGCCTCCTCGCCAGGACGTGAAGCTGCAGAGCTGCCTGCTGCCGAGGCCCAAGAGACCTGAAACAAGTCCAGTCCCACTCAGGCCCAGG---CCGGGGATGCCAGGGGCAGGGCGGGAACAAGCA-GGGGCTGTTTC------------------------------------------------------------TGGGAA----------------------------------------------------------GAGGGCGCGAGC-------AGAGAGGGC-----------------------------GGTGGGTGAGCTTGTGGGG--------------------GGCGGGAAGGTGGTGTC--ACCTATGCTGACAGGTTGGAATCGTAAGTCCCATCGTCCCTGCTGCCAGGAACAAGGGcaggagacctggttccagccccagctgggccactgaggctggctcttcaaccACTGCAGGCACTCGAGACGGTAGTTAGGCCTTTCTTCCCGGTGTAGCCTGTAGAACTGCAGCCCTCGGAGGCCTGGGGTCAGGAGATGGGAAGAGAGAAAGGGCTTAT-CCAGGGC
i chlSab2.chr15                C 0 I 34
s calJac3.chr17                   946333 644 -  74750902 gtgaggatgttggaagcttcctaac-tttacaagatcaggaaatggaggcccagat-ggggaagggtctGGGAAGGGAATGAGGAC-AGAGGCTTCATCCTGAGGATCCC-CT-GCTTGGCT---------------------------------------------GGGAA--------GGT-GGGGCTGAGA-------GGACT--CAC-CACCAAACTGCCGAGGACTCTGCACGTGCCAGCCTTCACGAAGCTCTCCCCAGGGCCCGTAGCTGCAGCACACGCCTCCTCGCCAGGAGGTGAAGCTGCAGAGCTGCCTGCTGCCGGGGGCCCACCGACCTGAAACAAGTCCAGTCGTGCTCAGGCCCAGG---CTGGGGCTGCCAGGGGTGGGCCGGGAACAAGCAGGGGGTTGTTTC------------------------------------------------------------TGGGAA----------------------------------------------------------GAGG------------------------------CTGAGGGCATGAGCAGAGAGGATGGTGGGTGGGCTTGTGGGG--------------------GACAGGAAGGAAGTGTC--ACCTATGCTGACGGGTCGGAATCGTAAGTCCCATCGTCCCTGCTGCCAGGAACAAGGGCAGGAGACCTGGTTCCAACCCCAGCTGGGCCACTGAGGCTGGCTCCTCAGCCACTGCAGGCACATGAGACGGTAGTTGGGCCTTTCTTCCCTGTGTAGCCTGTAGAACTGCAGCCCTCGGAGGCCTGGGGTTGGGGGATGGGGAGGAAAAAAGGGCTTATCCCAGGGC
i calJac3.chr17                C 0 I 1
s mm10.chr16                    65441407 713 -  98207768 --AAGGAAGATGGCAGGTTCTGAAC-TTTTCAAGATCAGGGGACTGGGACC---AGAGAGAAAGCATCTGGGAA-GCATTGGGATCAAGAGGCTTCATCCGGAAGGTCCC-ATAGCCTGTCT---------------------------------------------GAGAAGAGCCGCGGGC-GGGGTTAAGGTCTCCAGGAAGA--TACTTACCAAACTGCCAAGGACTGTGCATTCTCCAGCCTTCTCGAAACTCTCCCCAGGCACCATAGCTGCAGCACACACCCCCTCGCCCGGAGGAGAAGCTGCACAGCTGCCT---------GTCCCACCAACCTGCAAAGAGACCAGACATCCTCAGGTCCAGG------AGCTTGTGACAGGTGAGGCGGGA--------GGGGCtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgGTGCTGTCTCTCTGTGGGGG----------------------------------------------------------GAGGGGCTCAGCGTGTCTGGGAGAGGGCAGGAC-----AGGTGTGAGCAGAGGTGATGGCCGGTGGGCTTGTCAAG--------------------GGCAGGAAGGAAGTATC--ACCTGGGTTGATGGGCCTGAACCGAAAGTCCCGTTGTCCCTGCTGCCAGGAGCAAGGGCAGGAAACTGAGCTCCAGCCCCAGCTGGGCTGCTGAGGCTGACTCTCCAGCCACTGCAGACATTTGAGCCGGTAGTTGGGCCGCTCCTCCCTGTGCAGCCTGTAGACCTGCAGTCCCCGGATGCCTG------AGGAACAA---GGAAAGCAGTGCTTATGTCAGAAC
i mm10.chr16                   C 0 I 1
s canFam3.chr33                 29077026 737 +  31377067 GAAGGGCTGCTGGAAGCTTCCCAGT-GTTACAACATGAGGAAATCAGTGGCCAGAGAGGGTAAGGGGCTGGGAG-GGAAGGGGGGCGAAAGGCTTCTTTCTTCAGATCCCACT-ACTTGGCTCGGAGGCCCAGGCCTGGTCTCTGACAGAGAAGGGTAGAGACTCCAGAGAA--------GGTGGGGGGTGAGATGTCCGTGAACACGCACGTACCAAACTGCCAAGGATCGTGCACCCTCCAGCCTTGGAGAAGCTCGCCCCAGGGCCCGTAGCTGCAGCACACGCCCCCGCGCCAGGAGGAGAAGCTGCACAGCTGCCTGCTGCCGAGGCCCCACCAGCCTGCAACGGGTACAGACACGCTCAGGCCCAGAGGCCCGGGAGCG---GGGGAGGGACGGGA---GGCT-GGGGGGGACCC------------------------------------------------------------TGGGG-----------------------------------------------------------GAGGGGCCGAGGGTGCCCTGGAAGGGACAGGTC-----AGGCGTGACCGGAG-GGTTGGTGGGTGGGCTTACGGGGGCGGTGGGCATGCCCCAAGAGGCAGGGAGGAGCTCTCTTACCTATGCTGCTAGGCTGGAACCGCAAGTCCCACAGTCCCTGCTGCCAGGAGCAAGGGCAGGAGACCTGGTTCCAGCCCCACGTGGGCCACTGAGGCTGTGTCTTCAACCACTGCAGGCACCTGAGACGGTAGTTGGGCCTTTCTTCCTGGTGCAGGCTGTAGAGCTGCAGGCCCCGGAGGCCTAG-----CGGAACAGAGGAGGGAGGGATGCTGCT-CCAGGGC
i canFam3.chr33                C 0 I 2

a score=4193.000000
s hg38.chr3_KI270935v1_alt        135985 7 +    197351 -TGGGGCT
s panTro4.chr3_GL389630_random     99325 7 +    103936 -TGGGGCT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199795048 7 + 202140232 -TGGGGCT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120890545 7 + 123690457 -TGGGGCT
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     81213 6 + 192460366 -TGGGCC-
i macFas5.chr2                 I 1 C 0
s papAnu2.chr2                     76437 6 - 187378091 -tgggcc-
i papAnu2.chr2                 I 1 I 27
s calJac3.chr17                   946978 7 -  74750902 -TGGGGCT
i calJac3.chr17                I 1 C 0
s mm10.chr16                    65442121 6 -  98207768 -CAGGCT-
i mm10.chr16                   I 1 C 0
s canFam3.chr33                 29077765 7 +  31377067 CAGGGCC-
i canFam3.chr33                I 2 C 0
e rheMac3.chrUn_JH291127           46103 34 +    111706 I
e chlSab2.chr15                   429352 34 -  91754291 I

a score=29586.000000
s hg38.chr3_KI270935v1_alt        135992 26 +    197351 GCAGGCCCTGTCTCAGCTTTAGGGTC
s panTro4.chr3_GL389630_random     99332 26 +    103936 GCAGGCCCTGTCTCAGCTTTAGGGTC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199795055 26 + 202140232 GCAGGCCCTGTCTTAGCTTTAGGGTC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120890552 26 + 123690457 GCAGGCCCTGTCCTAGCTTTAGGGTC
i nomLeu3.chr11                C 0 C 0
s macFas5.chr2                     81219  7 + 192460366 -------------------TGGGGTC
i macFas5.chr2                 C 0 I 20
s calJac3.chr17                   946985 26 -  74750902 GGAGGCCCTGTCTTAGCTTTAGGGTC
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65442127 26 -  98207768 GCAAGCTCAGTTCCAGCTTCAGACTC
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29077772 21 +  31377067 GCACGCTCTGCATTAGC-----GACC
i canFam3.chr33                C 0 C 0
e rheMac3.chrUn_JH291127           46103 34 +    111706 I
e chlSab2.chr15                   429352 34 -  91754291 I
e papAnu2.chr2                     76443 27 - 187378091 I

a score=50742.000000
s hg38.chr3_KI270935v1_alt        136018 47 +    197351 --AACCAAAACTCACAAATGCACCCCCTCCTGCCACTTCTCACCTCTTT
s panTro4.chr3_GL389630_random     99358 47 +    103936 --AACCAAAACTCACAAATGCACCCCCTCCTGCCACTTCTCACCTCTTT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199795081 47 + 202140232 --AACCAAAACTCACAAATGCACCCCCTCATGCCACTTCTCACCTCTCT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120890578 47 + 123690457 --AACCAAAACTCACAAATGCACCCCCTTATGCCGCTTCTCACCTCTTT
i nomLeu3.chr11                C 0 C 0
s calJac3.chr17                   947011 45 -  74750902 --AACGAAAACTCACAAATGCACCCCC--GTGCCACTTCTCACCTCTTT
i calJac3.chr17                C 0 I 18
s mm10.chr16                    65442153 45 -  98207768 --AACGCAAACTCCTGGCTGCATCCTC--CATCCATGTCCTGCCTCTCT
i mm10.chr16                   C 0 I 20
s canFam3.chr33                 29077793 46 +  31377067 GAGACC--GACTCACAGATGCACCTTCTGCTACCGCCTCT-GCCTCTCG
i canFam3.chr33                C 0 C 0
e rheMac3.chrUn_JH291127           46103 34 +    111706 I
e chlSab2.chr15                   429352 34 -  91754291 I
e macFas5.chr2                     81226 20 + 192460366 I
e papAnu2.chr2                     76443 27 - 187378091 I

a score=16833.000000
s hg38.chr3_KI270935v1_alt        136065 4 +    197351 GGAC
s panTro4.chr3_GL389630_random     99405 4 +    103936 GGAC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199795128 4 + 202140232 GGAC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120890625 4 + 123690457 GGAC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           46137 4 +    111706 GGGC
i rheMac3.chrUn_JH291127       I 34 C 0
s macFas5.chr2                     81246 4 + 192460366 GGGC
i macFas5.chr2                 I 20 C 0
s papAnu2.chr2                     76470 4 - 187378091 GGGC
i papAnu2.chr2                 I 27 C 0
s chlSab2.chr15                   429386 4 -  91754291 GGGC
i chlSab2.chr15                I 34 C 0
s calJac3.chr17                   947074 4 -  74750902 GGAC
i calJac3.chr17                I 18 C 0
s mm10.chr16                    65442218 4 -  98207768 GGAT
i mm10.chr16                   I 20 C 0
s canFam3.chr33                 29077839 4 +  31377067 GGAC
i canFam3.chr33                C 0 I 864

a score=104898.000000
s hg38.chr3_KI270935v1_alt        136069 34 +    197351 CCAAGTCAGATGGGCAACAATTCCTCCCCCAAAG
s panTro4.chr3_GL389630_random     99409 34 +    103936 CCAAGTCAGATGGGCAACAATTCCTCCCCCAAAG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199795132 34 + 202140232 CCAAGTCAGATGGGCAACAATTCCTCCCCCAAAG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120890629 34 + 123690457 CCAAGTCAGATGGGCAATAATTCCTCCCCCAAAG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           46141 34 +    111706 CCACGTCAGGTGGGCAAGGATTCCTCCCCCAAAG
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     81250 34 + 192460366 CCACGTCAGGTGGGCAAGGATTCCTCCCCCAAAG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     76474 34 - 187378091 CCACGTCAGGTGGGCAAGGATTCCACCCCCAAAG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   429390 34 -  91754291 CCACGTCAGGTGGGCAAGGATTCCTCCCCCGAAG
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   947078 34 -  74750902 CCAATTCAGACGGGCAACGATTCCTCCCCCAGTG
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65442222 33 -  98207768 CCACTTCAGAATGGCAGTGATTTCT-CTCCAAAC
i mm10.chr16                   C 0 C 0
e canFam3.chr33                 29077843 864 +  31377067 I

a score=24769.000000
s hg38.chr3_KI270935v1_alt        136103 8 +    197351 CCCCTCGC
s panTro4.chr3_GL389630_random     99443 8 +    103936 CCCCTCGC
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199795166 8 + 202140232 CCCCTCGC
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120890663 8 + 123690457 CCCCTCGC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           46175 8 +    111706 CCCATTAC
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     81284 8 + 192460366 CCCATTGC
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     76508 8 - 187378091 CCCATTGC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   429424 8 -  91754291 CCCATTGC
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   947112 8 -  74750902 CCCATCAC
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65442255 8 -  98207768 CACCTTGC
i mm10.chr16                   C 0 I 779
s canFam3.chr33                 29078707 8 +  31377067 cccatgat
i canFam3.chr33                I 864 C 0

a score=891513.000000
s hg38.chr3_KI270935v1_alt        136111 271 +    197351 TTGACTTAGCGTCTGCTTCTGACGACCAAACGTGGTtgccacagaacaaatagaactggatttacacttcacagttcacgtggctggtttct----aaggctaaaatgtccttcaacctat-cacattttggaaactattatttctttcccattgggGCCTC-------TGGAC-------T-----GAGTCATGGAGAA-GGCGCCattgtttgcctcttgacgcttgtctttctacccgcatgaaagctctttgagagaaaacacagttggtctttttcctt----------tgtttctggctg
s panTro4.chr3_GL389630_random     99451 271 +    103936 TTGACTTAGCGTCTGCTTCTGACGACCAAACGTGGTtgccacagaacaaatagaactggatttacacttcacagttcacgtggctggtttct----aaggctaaaatgtccttcaacctat-cacattttggaaactattatttctttcccattgggGCCTC-------TGGAC-------T-----GAGTCATGGAGAA-GGCGCCattgtttgcctcttgacgcttgtctttctacccgcatgaaagctctttgagagaaaacacagttggtctttttcctt----------tgtttctggctg
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199795174 278 + 202140232 TTGACTTAGCGTCTGCTTCTGATGACCAAATGTGGTtgccacagaacaaatagaactggatttacacttcacagttcacgtggctggtttct----aagcctaaaatgtccttcgtcctat-cacattttggaaattgttatttctttcccattgggGCCTC-------TGGAC-------T-----GAGTCATGGAGAAgggcaccatcgtttgcctcttgacgtttgtctttctacccacatgaaagctctttgagcgaaaacacagttggtctttttcctt----tgaaaatgtttccggccg
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120890671 277 + 123690457 TTGACTTAGCGTCTGCTTCTGATGACCAAACATGGTtgccacagaacaaatagaactggatttacacttcacagttcacgtggctggtttct----aaggctaaaatgtccttcgtcctat-cacattttggaaactattatttctttcccattgggGCCTC-------TGGCC-------T-----GAGTCATGGAGAA-GGCACCAtcatttgcctcttgacgcttgtctttctacccacgtgaaagctctttgagagaaaacacagttggtctttttcctt----tgaaaatgtttctggcca
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           46183 274 +    111706 TTGACTTAGCGTCTGTTTCT--TTACCAAAAGTGGTtgccacagaacaaatagaactggatttatacttcacaattcacatggctgggttct----aaggctaaactgtcctttatcctat-cacattttggaaactattgtttctttcccattgggGCCTC-------TGGAC-------T-----GAGTC--GGAGAA-GGCGCCATCGTCtgcctcttgacacttgtctttctacccacatgaaagctctttgagagtaaacatagttgatctttttccgtt---ttaaaatgtttctggctg
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     81292 274 + 192460366 TTGACTTAGCGTCTGTTTCT--TTACCAAAAGTGGTtgccacagaacaaatagaactggatttatacttcacaattcacatggctgggttct----aaggctaaactgtcctttatcctat-cacattttggaaactattgtttctttcccactgggGCCTC-------TGGAC-------T-----GAGTC--GGAGAA-GGCGtcatcgtctgcctcttgacacttgtctttctacccacatgaaagctctttgagagtaaacatagttgatctttttccttt---ttaaaatgtttctggctg
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     76516 274 - 187378091 TTGACTTAGCGTCTGTTTCT--TTACCAAAAGTGGTTGCCACAGAACAAATAGAACTGGATTTATACTTCACAATTCACGTGGCTGGTTTCT----AAGGCTAAACTGTCCTTTATCCTAT-CACATTTTGGAAACTATTGTTTCTTTCCCATTGGGGCCTC-------TGGAC-------T-----GAGTC--GGAGAA-GGTGCCATCGTCTGCCTCTTGACACTTGTCTTTCTACCCACATGAAAGCTCTTTGAGAGTAAACATAGTTGATCTTTTTCcgtt---ttaaaatgtttctggcTG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   429432 274 -  91754291 TTGACTTAGCGTCTGTTTCT--TTACCAAAAGTGGTtgccacagaacaaatagaactggatttatacttcacaattcacgtggctgggttct----aaggctaaactgtcctttatcctat-cacattttggaaactattgtttctttcccattgggGCCTC-------TGGAC-------T-----GAGTC--GGAGAA-GGCGCCATCGTCtgcctcttgacacttgtctttctacccacatgaaagctctttgagagtaaacatagttgatctttttccatt---ttaaaatgtttctggctg
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   947120 266 -  74750902 -TGATTTAGCACCTGTTTCTGATTACCAGACGTGGTTGCCAGAGAACAAATAGAAGTGGATTTACACTTCGCAACTCACGGGGCT-GCTGCC----AGGGTGAAAATGTCCTTTGTCCTAT-CACATTTTGGAAACTG--ATTTCTTTCCCATTGCGGCCGC-------TGGAC-------GTGACAGAGTCATGGAGCA-GGTGCCATCgtttgcc-------------ccttttacctgcatgaaagctctttgagagcaaacatagttggtctttttccttt---taaaaatgtttctggctg
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65443042 290 -  98207768 CTGACCCAACTTACGTGCCTGATTGCCAAACTTCTTTGTCCCAGATCAACTAGACCTGGACTCACACTT--GCATCTGCCTGACTGACCTCTTCCGAAGGCTAGCATGCCCTTTTCTCCAT-CACATTTTGGAAGCTGACATTTCTTTCCTGTTGGAACCTCTCTATATTAGAC-------T-----GAGTCTCAGAGGA-AGCCCCACAGTTTGCCTCTGGACACTAGGGTCTCCACCATAGTGAATGCTTGTTGAGAGCCAACATAGCTGGCCTTCATCCTCTTTCTCtccatttttctgtcag
i mm10.chr16                   I 779 C 0
s canFam3.chr33                 29078715 260 +  31377067 ttgacttagctgctgtttcg------cagaagtgtttgtcgcagaacaaatagcac---gtttatgtttcaccatctgcgtggctgatgtcT----AACGCTAAACCGTCCTTCGTTCTATGCACATTTGGGGAACTGTAATTTCTTTCCTCTTGGGGCTTC-------CGGACAATAGATT-----GAGTCACGTCCAT-GG----------GGCCTCCTGATACTGAAGCACCGGCATTCCTAACAGCTATTTGAGAGCAAACGTAGGCAGTCTGCTCCTTT----------TGTttttctttt
i canFam3.chr33                C 0 I 187

a score=288052.000000
s hg38.chr3_KI270935v1_alt        136382 113 +    197351 ttagcacggtgtccagcacacggcaggtgcccagtaaatgatgac--aatgaacgTGAGACCTCCGGGCCTCTTCTTGGTGGAttctctctttttgagatggagtctcactctgt
s panTro4.chr3_GL389630_random     99722 113 +    103936 ttagcacggtgtccagcacacggcaggtgcccagtaaatgatgac--aatgaacgTGAGACCTCCGGGCCTCTTCTTGGTAGAttctctctttttgagatggagtctcactctgt
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199795452 113 + 202140232 ttagcacagtgtccagcacacggcaggtgcccagtaaatgatgac--aatgaacgTGAGACTTCCGGGCCTCTTCTTGGTAGAttctctctttttgagatggagtcttgctctgt
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120890948 111 + 123690457 ttagca--gtgtccagcacacggcaggtgcccaataattgatgac--aatgaatgTGAGACCTCCGGGCCTCTTCCTGGTAGAttctctctttctgagacggagtctcactctgt
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           46457 104 +    111706 ttagcacagtgtccagcacacagcaggtgcccagtaaatgatgat--gatgaatgT---------CGGCCTCTCCTTCGTAGAttctctctttctgagatggagtctcgctctgt
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     81566 104 + 192460366 ttagcacagtgtccagcacacagcaggtgcccagtaaatgatgat--gatgaatgT---------CGGCCTCTCCTTCGTAGAttctctctttctgagatggagtctcgctctgt
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     76790 104 - 187378091 TTAGCACAGTGtccagcacacagcaggtgcccagtaaatgatgat--gatgaatgt---------CGGCCTCTCCTTCGTAGATTCTCtctttctgaaatggagtctcgctctgt
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   429706 104 -  91754291 ttagcacagtgtccagcacacagcaggtgcccagtaaatgatgat--gatgaatgT---------CGGCCTTTCCTTCGTAGAttctctctttctgagatggagtctcgctctgt
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   947386 109 -  74750902 ttagcatagtgtctaccacacggcaggtgctcaatcaatgatgat--aatgaatgTCAGACCTCTGGAC----TCTTGGTAGAttctctctttttgagatagagtcctgctctgt
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65443332  64 -  98207768 ttaacctaccatctggcagatagtaaatgctcaataaatgttgaccgagtaaatgC---------CAGCCCTT------------------------------------------
i mm10.chr16                   C 0 C 0
e canFam3.chr33                 29078975 187 +  31377067 I

a score=213609.000000
s hg38.chr3_KI270935v1_alt        136495 76 +    197351 cacccaggctggagtgcagtggcgcgatctcggctcgctgcaacctccacctcccaggttcaaacaattctcctgc
s panTro4.chr3_GL389630_random     99835 76 +    103936 cacccaggctggagagcagtggcgcgatctcggctcgctgcaaactccacctcccaggttcaaacaattctcctgc
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199795565 76 + 202140232 cacccaggctggagtgcagtggtgcgatctcggctcgctgcaacctccacctcccaggttcaaacaattctcctgc
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120891059 76 + 123690457 cacccaggctggagtgcagtggcgtgatctcggctcgctgcaacctccacctcccaggttcaaacaattctcctgc
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           46561 76 +    111706 cacccaggcgggagtgcagtggagcgatctcggctcgctgcaacctccacctcccgggttcaaacgattctgctgc
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     81670 76 + 192460366 cacccaggcgggagtgcagtggagcgatctcggctcgctgcaacctccacctcccgggttcaaacgattctcctgc
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     76894 76 - 187378091 cacccaggtgggagtgcagtggagcgatcttggcttgctgcaacctccacctcccgggttcaaacgattctcctgc
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   429810 76 -  91754291 cacccaggcgggagtgcagtggagtgatctcggctcgctgcaacctccaccttccgggttcaaacgattctccttc
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   947495 75 -  74750902 catccaggctggagtgcagtaatgtgatctcggctcactgcaacctcc-tctcccaggttcaaaagattgtcctgc
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65443396 15 -  98207768 --------------TGCAATG-----------------------------------------------TCTCCTGC
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29079162 62 +  31377067 cgccctgggtggaaggcag------gcgctcagc-cactgag-------ccccccgggcgccccCATTCCTCCCCT
i canFam3.chr33                I 187 C 0

a score=498395.000000
s hg38.chr3_KI270935v1_alt        136571 188 +    197351 ctcaacctattgagtagctggaattacaggtgtgcaccacaacgtctggctaatttttgtatttttagtagagacagaatttcaccatgttggccaggctggtctcgaactcctgatctcaagtgatccgcccacctcagcctcccaaaatgctgggattacaggtgtgagccatggcg-cccagccGG
s panTro4.chr3_GL389630_random     99911 188 +    103936 ctcagcctcttgagtagctggaattacaggtgtgcgccacaacgtctggctaatttttgtatttttagtagagacagaatttcaccatgttggccaggctggtctcgaactcctgacctcaagtgatccgcccacctcagcctcccaaagtgctgggattacaggtgtgagccatggcg-cccagcTGG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199795641 188 + 202140232 ctcagcctcttgagtagctggagttacaggtgtgcgccacaatgcccggctaatttttgtatttttaatagagacgaggtttcacgatgttggccaggctggtctcgaactcctgacctcaagtgatccgcccacctcagcctcccaaagtgctgagattacaggtgtgagccacggcg-cccagccGG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120891135 188 + 123690457 ctcagcctcttgagtagctggaattacaggtgtgcgccacaacgcccagctaatttttgtatttttactagagacagaatttcaccatgctggccaggctggtctcgaactcctgacctcaagtgatctgcccacctcagcctcccaaagtgctgggattacaggtgtgagccacggcg-cccagccAG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           46637 189 +    111706 ctcagcctctcgagtagctggaattacaggtgtgcgctacaatgactggctaatttttgtgtatttagtagagacagagtttcaccatgttgcccaggctggtctcaaactcctgacctcaggtgatccgcccacctcggcctcccaaagtgctgggatcacaggcgtgagccaccgcaccccggccGG
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     81746 189 + 192460366 ctcagcctctcgagtagctggaattacaggtgtgcgctacaatgcctggctaatttttgtgtatttagtagagacagagtttcaccatgttgcccaggctggtctcaaactcctgacctcaggtgatccacccacctcggcctcccaaagtgctgggatcacaggcgtgagccaccacaccccggccGG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     76970 188 - 187378091 ctcagcctctcgagtaactggaattacaggtgtgcgctacaatgcctggctaatttttgtgtatttagtagagacagagtttcaccatgttgcccaggctggtctcaaactcctgacctcaggtgatccacccacctcggcctcccaaagtgctgggatcacaggcgtgagccactgcg-cccggccgg
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   429886 188 -  91754291 ctcagcgtctcgagtagctggaattacaggtgtgcgctacgatgcccggctaatttttgtgtatttagtagagacagagtttcaccatgttgcccaggcgggtctcaaactcctgacctcaagtgatccgcccacctcagcctcccaaagtgctgggatcacaggcgtgagccactgcg-cccggccGG
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   947570 179 -  74750902 ctcagcctgctgagtagctgggattacaggtgtgcaccacaacgcctggctaatttgtgtgtttttagcag-------gtttcaccctgttgcccaggctggtctcgaactcctgacctcaagtgatctg-ccacctcgacctcccaaagtgccgggattacaggcatgaaccatcttg-cccAAC-AG
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29079224  98 +  31377067 -TCCTACTCCTG----GCTCTCAGCACA-GCGTGCAGCACGCAGCA--------------------GGTGGAGACGTGCTTCCGTGACGATGACTGCACG----TCAGGCTCCTG-----------------------GACCTCC-----TGTTGG---------------------------------
i canFam3.chr33                C 0 C 0
e mm10.chr16                    65443411   0 -  98207768 C

a score=230466.000000
s hg38.chr3_KI270935v1_alt        136759 67 +    197351 TAGATTTTCTTAAAGGATCTCACCTGGGTTCTCATTCCTGCTCTGG-ACAGGACACTT-GGA-GTATTGT
s panTro4.chr3_GL389630_random    100099 67 +    103936 TAGATTTTCTTAAAGGATCTCACCTGGGTTCTCATTCCTGCTCTGG-ACAGGACACTT-GGA-GTATTGT
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199795829 67 + 202140232 TAGATTTTCTTAAAGGATCTCACCTAGGTTCTCATTCCTGCTCTGG-ACAGGACACTT-GGA-GTATTGT
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120891323 67 + 123690457 TAGATTTTCTTAAAGGATCTCACCTGGGTTCTCATTCCTGCTCTGG-ACAGGACACTT-GGA-GTATTGT
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           46826 67 +    111706 TAGATTTTCTTAAAGGATCTCACCTGGGTTCTCATTCCTGCTCTGG-GCAGGACACTT-GGA-GAATTGT
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     81935 67 + 192460366 TAGATTTTCTTAAAGGATCTCACCTGGGTTCTCATTCCTGCTCTGG-GCAGGACACTT-GGA-GAATTGT
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     77158 67 - 187378091 tagATTTTCTTAAAGGATCTCACCTGGGTTCTCATTCCTGCTCTGG-ACAGGACACtt-gga-gaattgt
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   430074 67 -  91754291 TAGATTTTCTTAAAGGAGCTCACCTGGGTTCTCATTCCTGCTCTGG-GCAGGACACTT-GGA-GAATTGT
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   947749 68 -  74750902 TAGATTTTCTTAAGGGATCTCCCCTGGGTTCTCATTCCAGCTCTGG-ACAGGACACTTGGGA-GTACTGT
i calJac3.chr17                C 0 I 240
s mm10.chr16                    65443411 56 -  98207768 TAGATATCTTTAA-------------GGATCTTACTCCAGCTCTGGAATTGGGTATTT-ATATGTGTTAT
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29079322 64 +  31377067 TAGGGTCCCTTCTGGGATCTCACCCGGACGCCC--TCCAGCTCCGC-TC-GGCCACCT-GGA-GTAGCGG
i canFam3.chr33                C 0 C 0

a score=1540152.000000
s hg38.chr3_KI270935v1_alt        136826 458 +    197351 CTGAACTGCCCATTCA-AATCCCACCTCCCACAA-GACCCTGTCCTCAC--TTCCAGGATCTGGGCCCCCC------GAGAGCCCTCTTGGGCTGGT-TCATCTGAGGGAGGAGATG-TAGCCCCCTCT-----------------GAGACTGTGCTGTGTCCAGGGGTGCAGGAGGTGCCAGCTGCTCCCTGGGTG-GTGCCACATCCCACCTAGACCTGTAGGAGGTTGAACTGTGTGGGGGAGGCCCTTCAGGATGGCCGTGATGTTAGGGAGGTGCCCTCTAGGACTGCGATGGTGTATGGGCTGGA-----------------------------------GGACACGCGAGGGCTTGAGACCAGCTCAGGTGTGATAAGGTGGCACTTTTACCTGAGTTGGAATTCAGGAATCTATCAGGGCGATACCTCTCCCACACTGGCTGGGACATCAGTGGGCTGTTTTCGAAATAGCCATCTCCACTGCAGG-AAAGGAGAGAC--TCTCAGGCCTCT--GCCGTG
s panTro4.chr3_GL389630_random    100166 493 +    103936 CTGAACTGCCCATTCA-AATCCCACCTCCCACAA-GACCCTGTCCTCAC--TTCCAGGATCTGGGCCCCCC------GAGAGCCCCCTTGGGCTGGT-TCATCTGAGGGAGGAGATG-TAGCCCCCTCT-----------------GAGACTGTGCTGTGTCCAGGGGTGCAGGAGGTGCCAGCTGCTCCCTGGGCG-GTGCCACATCCCACCTAGACCTGTAGGAGGTTGAACTGTGTGGGGGAGGCCCTTCAGGATGGCCGTGATGTTAGGGAGGTGCCCTCTAGGACTGCGATGGTGTATGGGCTGGAGGACACACGAGGACTGTGATGGTGTATGGGCTGGGGGACACGCGAGGGCTTGAGGCCAGCTCAGGTGTGATAAGGTGGCACTTTTACCTGAGTTGGAATTCAGGAATCTATCAGGGCGATACCTCTCCCACACTGGCTGGGACATCAGTGGGCTGTTTTCGAAATAGCCATCTCCACTGCAGG-AAAGGAGAGAC--TCTCAGGCCTCT--GCCGTG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199795896 476 + 202140232 CTGAACTGCCCATTCA-AATCCCACCTCCCACAA-GACCCTGTCCTTAC--TTCCAGGATCTGGGCTCCCC------GAGAGCCCTCTTGGGCTGGT-TCATCTGAGGGAGGAGATG-TAGCCCCCTCCCTCAGAGGGGCTGTGCACAGACTGTGCTGTGTCCAGGGGTGCAGGAGGTGCCAGCTGCTCCCTGGGCGAATGCCACATCCCACCTAGACCTATAGGACATTGGACTGTGTGGGGGAGGCCCTTCAGAATGGCCGTGATGTTAGGGAGGTGCCCTCTAGGACTGCGATGGTGTATGGGCTGGA-----------------------------------GGACACGCGAGGGCTTGGGACCAGCTCAGGTGTGATAAGGTGGCACTTTTACCTGAGTTGGAATTCAGGAATCTATCAGGGCGATACCTCTCCCACACTGGCTGGGACATCAGTGGGCCGTTTTCGAAATAGCCATCTCCACTGCAAG-AAAGGAGAGAC--TCTCAGGCCTCT--GCCATG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120891390 456 + 123690457 CTGAACTGCCCATTCA-AATCCCACCTCCCACAA-GACCCGGTCCTCAC--TT-CAGGATCTGGGCCCCCC------GAGAGCCCTCTTGGGTTGGT-TCATCTGAGGCAGGAGATGTTAGCCCCCTCT-----------------GAGACTGTGCTGTGTCCAGGGGTGCAGGAGGTGCCAGCTGCTCCCTGGGCG-GTGCCACATCCCACCTAGACCTGTAGGAGGTTGGAC--TGTGGGGGAGGCCCTTCAGGATGGCAGTGATGTTAGTGAGGTGCCCTCTAGGACTGCGATGGTGTATGGGCTGGA-----------------------------------GGACACACGAGGGCTTGAGACCAGCTCAGGTGTGATAAGGTGGCACTTTTACCTGAGTTGGAATTCAGGAATCTATCAGGGCGATACTTCTCCCACGCTGGCTGGGACATCAGTGGGCTGTTTTCGAAATAGCCATCTCCACTGCAGG-AAAGGAGAGAC--GCTCAGGCCCCT--GCCGTG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           46893 461 +    111706 CTGAACTGCCCATTCA-AATCCCACCTCCCACAA-GACCCTGTCCTCAC--TTCTGGGATCTGGGCCCCCCT-----GAGAGCCCTCTTGGGTTGGT-TCATCTGAGGGAGAAGATG-TAGCCCCCTCT-----------------GAGACTGTGCTGTGTCCAGGGGTGCAGGAGGTACCAGCGGCCCCCTGGGCG-GTGCCACATCCCACCTAGACCTGTAGGAGGTTGGACTGTGCAGGGGAGGCCCTTCAGGACGGTGGTGACGTTAGGGAGCGGCCCTCTAGGACTGCGGTGGTGTGTGGGCTGGA-----------------------------------GGACACACGAGGGCTTGAGGCCAGCTCAGGGGTGATAAGGTGGCACTTTTACCTGAGCTGGAATTCAGGAATCTATCAGGGCGATACTTCTCCCACACTGGCTGGGACATCAGTGGGCTGTTTTCGAAATAGCCGTCTCCACTGCAGG-GAACGAGAGACTGTCTCAGGCCTCC--GTCATG
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     82002 461 + 192460366 CTGAACTGCCCATTCA-AATCTCACCTCCCACAA-GACCCTGTCCTCAC--TTCTGGGATCTGGGCCCCCCT-----GAGAGCCCTCTTGGGTTGGT-TCATCTGAGGGAGAAGATG-TAGCCCCCTCT-----------------GAGACTGTGCTGTGTCCAGGGGTGCAGGAGGTACCAGCGGCCCCCTGGGCG-GTGCCACATCCCACCTAGACCTGTAGGAGGTTGGACTGTGCAGGGGAGGCCCTTCAGGACGGTGGTGACGTTAGGGAGCGGCCCTCTAGGACTGCGGTGGTGTGTGGGCTGGA-----------------------------------GGACACACGAGGGCTTGAGGCCAGCTCAGGGGTGATAAGGTGGCACTTTTACCTGAGCTGGAATTCAGGAATCTATCAGGGCGATACTTCTCCCACACTGGCTGGGACATCAGTGGGCTGTTTTCGAAATAGCCGTCTCCACTGCAGG-AAAGCAGAGACTCTCTCAGGCCTCC--GTCATG
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     77225 461 - 187378091 ctgaactgcCCATTCA-AATCCCACCTCCCACAA-GACCCTGTCCTCAT--TTCTGGGATCTGGGCCCCCCT-----GAGAGCCCTCTTGGGTTGGT-TCATCTGAGGGAGAAGATG-TAGCCCCCTCT-----------------GAGACTGTGCTGTGTCCAGGGGTGCAGGAGGTACCAGCGGCCCCCTGGGCG-GTGCCACATCCCACCTAGACCTGTAGGAGGTTGGACTGTGCAGGGGAGGCCCTTCAGGACGGTGGTGACGTTAGGGAGCGGCCCTCTAGGACTGCGGTGGTGTGTGGGCTGGA-----------------------------------GGACACACGAGGGCTTGAGACCAGCTCAGGGGTGATAAGGTGGCACTTTTACCTGAGCTGGAATTCAGGAATCTATCAGGGCGATACTTCTCCCACACTGGCTGGGACATCAGTGGGCTGTTTTCGAAATAGCCGTCTCCACTGCAGG-GAAGGAGAGACTCTCTCAGGCCTCT--GTCATG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   430141 460 -  91754291 CTGAACTGCCCATTCA-AATCCCACCTCCCACAA-GACCCTGTCCTCAC--TTCTGCGATCTGGGCCCCCCT-----GAGAGCCCTCTTGGGTTGGT-TCATCTGAGGGAGAAGACG-TAG-CCCCTCT-----------------GAGACGGTGCTGTGTCCAGGGGTGCAGGAGGTACCAGCGGCCCCCTGGGCG-GTGCCACATCCCACCTAGACCTGTAGGAGGTTGGACTGTGCAGGGGAGGCCCTTCAGGATGGTGGTGACGTTAGGGAGCGGCCCTCTAGGACTGCGGTGGTGTGTGGGCTGGA-----------------------------------GGACACACGAGGGCTTGAGACCAGCGCAGGGGTGATAAGGTGGCACTTTTACCTGAGCTGGAATTCAGGAATCTATCAGGGCGATACTTCTCCCACACTGGCTGGGACATCAGTGGGCTGTTTTCGAAATAGCCATCTCCACTGCAGG-GAAGGAGAGACTCTCTCAGGCCTCT--GTCATG
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   948057 459 -  74750902 CCATTCTACCCATTTA-CATCCCACCTCCCACAA-GGCCCTGTCTTCAC--TTCCAGGAGCTGGACCCCCC------GAGAGCCCTCTTGGGTTGGT-ACATCCGAGGGAGGAGATG-TAGCCCCCTCT-----------------GAGACTGTGCTGTGTCCAGGGGTGCAGAAGATGCCAGCTGCTCCCTGGGCA-GTGCCATGTCCCACTTAGACCTGTAGGAGGTTGGACTGTGTGGGGGACACCCTTCAAGATGGTGGTGATGCCCGGGAGCTGCCCTCTAGGACTGTGATGGCATATGGGCTGGA-----------------------------------GGACAAACCAGGGCTTGAGACCAGCTCAGGTGTGATAAGGTGGCACTTTTACCTAAGTTGGAATTCAGGAGCCTGTCGGGGCGATACTTCTCCCACACTGGCTGGGACATCAGTGGGCTGTTTTCAAAATAGCCATCTCCGCTGCAGGCAAAGGAAAGAT--GCTCAGGCCTCT--GCCAGG
i calJac3.chr17                I 240 C 0
s mm10.chr16                    65443467 428 -  98207768 CCTAACT--CCACACC-TATCTCCCTTCCTGCAGTGACCTTGTCATCCCCACTCCAGGACCAGGGTGCCTACAGATAGACAGACATTCTGGGTTTGTCTCTTCTACAGAATAAGATT-TA-------TA-----------------GGGGCTGAGA-GTATGAAAAGGTCCAGGCAGGATTAACTG-----TGGATG------------------CACCTGTAGGTGGCTGGTTTGTGCA--GGATGCTCTTCGGGGTGATGGAGAGGTTA-----CATCTGTCTAGGACTGTCATGGCATATGGTATAGA-----------------------------------GGGCAAGGGA-AGCCTGAAGCCAGCTCGTATGTGGT-GGGTGGCACTTTTACCTAATTTGGAATTCAGGAATCGATCTGGACGGTACTTCTCCATTGCTGGCCGGAATGTCAGCGGGCTGTTTTCAAAATACCCATCTCCACTGCAGGCAAAGGAAAGAC----TCAGGCCTCTGGGTCACA
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29079386 434 +  31377067 CCTAACTGCCCACGCATAGCCCCACCTCCTGCGC-GGCCCTGTTGTCAC--CTCCAGGACCCGGCCTCCCC------GAGAGCTGGGTTCGGCTGGT-CCCC-----GGCGGAGACC-TCGCCCCGCCC-----------------AAGA---TGCCCCACCCGAGGGCCCAGAAGGT-CCTGGTGTCCCGGGCGGG-GGGGCAGGTCCT-----GATCATAGTGGAGCCGCCCTGTCCGGGGAC--CCCCGTGGGATGGAGGAGACGCCGGGAGCCGCGGCTCGAGGACCCCCGCGCCGCATGG--CGGA-----------------------------------GGACAGAGGGCATTTAGGGTCCAGC-CAGGTGTGC----GGGGCGCTGTTACCTGTGTGGGTGTTCAGGAGCCGGTCGGGCTGGTACCTCTTCCACGTGGGCCCAGAGGACAGCGCGCTGTGGCCGCAGAGCCCGTCTCCGCTGCGGGCGGGGGAGAAGC-----CAGGCTGTC--GCGGCG
i canFam3.chr33                C 0 I 217

a score=567808.000000
s hg38.chr3_KI270935v1_alt        137284 188 +    197351 CACAGGCTCTTGCCTCGCG-GTTGCAAGGCGTCCATTCA-TCCCGCTAGCCGGT-----CAGCAGCTGGTCAACCAGCTAGGCGGG--------CAGTGGGTCAGTGGGTCAGCCAGCCCCCATTG---TCAAGCCCCAGCACTGAGCAGGAGAGGGGACAAGATGGCTGGGCAGAGGT-AGGAGGCTCTAACCGATTCCACAT---CTG
s panTro4.chr3_GL389630_random    100659 188 +    103936 CACAGGCTCTTGCCTCGCG-GTTGCAAGGCGTccattca-tcccgctagccggt-----cagcagctggtcaaccagctaggcggg--------cagtgggtcagtgggtcagccagccCCCATCG---TCAAGCCCCAGCACTGAGCAGGAGAGGGGACAAGATGGATGGGCAGAGGT-AGGAGGCTCTAACCGATTCCACAT---CTG
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199796372 188 + 202140232 CACAGGCTCTTGCCTCGTG-GTTGCAAGGCGTCTGTTCA-TCCCTctagccggt-----cagcagctggtcaaccagctaggcagg--------cagtgggtcagtgggtcagccagccCCCATCG---TCGAGCCCCAGCACTGAGCAGGAGAGGGAACAAGATGGATGGGCAGAGGT-GGGAGGCTCTAACCGATTCCACAT---CTG
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120891846 188 + 123690457 CACAGGCTCTTGCCTCATA-GTTGCAAGGTGTTCGTTCA-TCCCGCTAGCCGGT-----CAGCAGCTGGTCAACCAGCTAGGCAGG--------CAGTGGGTCAGTGGGTCAGCCAGCCCCCATCG---TTGAGCCCCAGCACTGAGCAGGAGAGGGGACAAGACAGATGGGCAGAGGG-AGGAAGCTCTAACCGATTCCACAT---CTG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           47354 185 +    111706 CACAGGCTCTTGCCTCGCG-GTTGCAAGGCGTCCATTCA-TCCCGCTGGCCGGT-----CAGCAGCTGGTCAGCCAGCTAGGCGGG--------CAGTGGGTCAGTGGGTCAGCCAACCCCCATTG---TCCAGCCCCAGCACTGAGCAGCAGAGGGGACAAGACGGATGGGCAGAGGT-AGGAGGCTCTAACCAATTCCGCTT------
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     82463 185 + 192460366 CACAGGCTCTTGCCTCGCG-GTTGCAAGGCGTCCATTCA-TCCCGCTGGCCGGT-----CAGCAGCTGGTCAGCCAGCTAGGCGGG--------CAGTGGGTCAGTGGGTCAGCCAACCCCCATTG---TCGAGCCCCAGCACTGAGCAGCAGAGGGGACAAGACGGATGGGCAGAGGT-AGGAGGCTCTAACCAATTCCGCTT------
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     77686 196 - 187378091 CACAGGCTCTTGCCTCGCG-GTTGCAAGGCGTCCATTCA-TCCCGCTGGCCGGT-----CAGCAGCTGGTCAGCCAGCTAGGCGGGcagtgggtcagtgggtcagtgggtcagCCAACCCCCATTG---TCGAGCCCCAGCACTGAGCAGCAGAGGGGACAAGACGGATGGGCAGAGGT-AGGAGGCTCTAACCAATTCCGCTTCTG---
i papAnu2.chr2                 C 0 M 1652
s chlSab2.chr15                   430601 185 -  91754291 CACAGGCTTTTGCCTCGCG-GTTGCAAGGCGTCCATTCA-TCCCGCTGGCCAGT-----CAGCAGCTGGTCAGCCAGCTAGGCGGG--------CAGTGGGTCAGTGGGTCAGCCAACCCCCATTG---TCGAGCCCCAGCACTGAGCAGCAGAGGGGACGAGACAGATGGGCAGAGGT-AGGAGGCTCTAACCAATTCCGCTT------
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   948516 189 -  74750902 AACAGGCCCTTGCCTCCTG-GTTGCAAGGCAACCATTCACTCCGGCTAGCTGGT-----CAGCAGCTGGCCAACCAGCTAGGCAGT--------CAGTGGGTCAGCTGGTCATCCGACCCCCATTG---TTGAGTCCCAGCACTGAGCAGGAGAGGGGACAAGATGGATGGGCAGAGGT-GGGAGGCTCTAACCGATTCTACAT---CTG
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65443895 194 -  98207768 CTCAAGCTCTTCGCTCTCATTTTGAAAGCTACTCATTCG-TTGAGTTTGTCAGTCATCCCAGCTCCCGGTCAG-CAGCT-GGTAGC--------CCATGGCTCAGTCAGCTGAGCAGCTCAGATTGAATCACAGTGCCAGTCCCAAGGGGGAGAAGGAAGAGAA--GATGGGTGGGGGTGGGGAGGTTCTGTGTTATCCCACAT---CTC
i mm10.chr16                   C 0 C 0
e canFam3.chr33                 29079820 217 +  31377067 I

a score=900230.000000
s hg38.chr3_KI270935v1_alt        137472 400 +    197351 ATCGCTAGCTGCAAGAAACTGGCAGGTCCGCTTGGTCATGAGACAGGGGCGTGAAAACAACAGAGTTCAGGCCTCATTTCTGTTTGTTTCCCTTCAACAAGCAGAGGGTTTGGAGCGGGACAGACTCTagggacagtgtattgtgatggttaagacccagtttctggagttaggcagtgatggattcaactgctgatccccccacttactagcttggtgaccacagacaagttactgaccctctctgattctt-agttttcacatctgtataaaagggattacagtggcatctacctcactgtattgtgaggattaaatgcagtaacatctgcaaatccctcagaactgagtgaggccttgatacaacagatgctGCCACTGCTGccaccaccaccaccac
s panTro4.chr3_GL389630_random    100847 400 +    103936 ATCGCTAGCTGCAAGAAACTGGCAGGTCCGCTTGGTCATGAGACAGGGGCGTGAAAACAACAGAGTTCAGGCCTCATTTCTGTTTGTTTCCCTTCAACAAGCAGAGGGTTTGGAGCGGGACAGACTCTagggacagtgtattgtgatggttaagagccagtttctggagttaggcagtgatggattcaactgctgatccccccacttactagcttggtgaccacagacaagttactgaccctctctgattctt-acttttcacatctgtataaaaaggattacagtggcacctacctcactgtattgtgaggattaaatgcagtaacatctgcaaatccctcagaactgagtgaggccttgatacaacagatgctGCCACTGCTGCCAccaccaccaccac
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199796560 400 + 202140232 ATCGCTAGCTGCAAGAAACTGGCAGGTCCGCTTGGTCATGAGACAGGGGCGTGAAAACAGCAGAGTTCAGGCCTCATTTCTGTTTGTTTCCCTTCAACAAGCAGAGGGTTTGGAGCGGGACAGACTCTagggacagtgtattgtgatggttaagagccagtttctggagttggacagtgatggattcaactgctgatccccacacttactagcttggtgaccacggacaagtcactgaccctctctgattctt-agttttcacatctgtataaaagggattacagtagcacctacctcactgtattgtgaggattaaatgcagtaatatctgcaaatccctcagaattgagtgaggccttgatacaacagatgctGccaccgctgccaccaccaccaccac
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120892034 400 + 123690457 ATCGCTAGCTGCAAGAAACTGGCAGGTCTGCTTGGTCATGAGACAGGGGCGTGAAAACAACAGAGTTCAGGCCTCATTTCTGTTTGTTTCCCTTCAAGAAGCAGAGGGTTTGGAGCAGGACAGACTCTagggacagtgtattatgatggttaagagccagtttctggagttaggcagtgatggattcaactgctgatccccacactttctagcttggtgaccatggacaagttactgaccctctctgattctt-agttttcacatctgtataaaagggattacagtagcacctacctcgctgtattgtgaggattaaatgcagtaccatctgcaaatccctcagaactcagtgaggccttgatacaacagatgctGCCACTGCTGccaccaccaccaccac
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           47539 389 +    111706 --------CTGCAAGAAACTGGCAGGTCCGCTTGGTCACGAGAC--GGGCGTGAAAACAACAGAGTTCAGGCCTCATTTCTGTTTGTTTCCCTTCAACAGGCAGAGGGTTTGGAGCGGGACAGACTCTAGGGacagtgtattgtgatggttaagagccagtttctggagttaggcagtgacggattcaactgctgatccccacacttactagcttggtgaccacggacaacttactgaccctctctggttctt-agttttcacatctgtgtaaaagggattaaagtagca-cgacctagctgtacggtgaggattcaatgcagtaacatctgcgaatccctcagaactgagtgaggcctcgatacaacaggtgctGCCACTGCTGTcaccaccaccaacac
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     82648 389 + 192460366 --------CTGCAAGAAACTGGCAGGTCCGCTTGGTCACGAGAC--GGGCGTGAAAACAACAGAGTTCAGGCCTCATTTCTGTTTGTTTCCCTTCAACAGGCAGAGGGTTTGGAGCGGGACAGACTCTAGGGacagtgtattgtgatggttaagagccagtttctggagttaggcagtgacggattcaactgctgatccccacacttactagcttggtgaccacggacaacttactgaccctctctggttctt-agttttcacatctgtgtaaaagggattaaagtagca-cgacctagctgtacggtgaggattcaatgcagtaacatctgcgaatccctcagaactgagtgaggcctcgatacaacaggtgctGCCACTGCTGTcaccaccaccaacac
i macFas5.chr2                 C 0 C 0
s chlSab2.chr15                   430786 390 -  91754291 --------CTGCAAGAAACTGGCAGGTCCGCTTGGTCACGAGACAGGGGCATGAAAACA--AGAGTTCAGGCCTCATTTCTGTTTGTTTCCCTTCAACAAGCAGAGGGTTTGGAGCAGGACAGACTCTAGGGacagtgtattgtgatggttaagagccagtttctggagttaggcagtgacggattcaactgctgatccccacacttactagcttggtgatcacggacaacttactgaccctctctgattcttaagttttcacatctgtgtaaaagggattaaagtagca-ctacctagctgtacagtgaggattcaatgcagtaacatctgcgaatccctcagaactgagtgaggcctcgatacaacaggtgctGCCACTGCTGTcaccaccaccaccac
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   948705 361 -  74750902 ATCACCAGCTGCAAGGAAGTGGCAGGTCAGCTTGGTCATGAGAT--GGGTGTGGAAACAACAGAGTTCAGGCCTCCTTTCTGTTTGTTTCCCTT----AAACAGAGGGATTGGAGAGGGACAGTCTGTAGGGACAGTGTATTGTGAT-GCTAAGAGCCAGTCTCTGGAGTTAGACAGGGATGGATTCAACTGCTGATCCCCAC------------------------------actgaccgtctctgagtctt-agttttcacgtc-gtgt-agagggattacagtagcacctaccttgcagtattgtggggattaaatgcagtaacacctgcgaatcgctcagaactgagtgGGGCCTCAATACAACAGCTGCTGCCACCACCACCAGCACCATCTCCAT
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65444089 317 -  98207768 ------ATCAGGGAGACATCAGCAGGCTCACTCAGT-ACACACC--CGGTGTGGAAGCCACAGAGTTGAGGCCAGATTTTCCTTTGTTTCCTCT---------GATGCTATCTA--AGGACATACTACAGGA------------GGTGCTTCCAGGTCAgtttc-ggggtcaggcagtcact--ttcagcccttgat-tctgcacttactaac--------------------ggtgatctggtctgactttgggGGTTTTATATCTGAGTGAAAGAGCCTTCCGTCGTC-----------------TAAGGCTTCAATGCAGTGACATTTGTAAATCTCTCACATCTGAGTGGAGACCACATTGAAGGGC-----------CTACCACCTCCACTGTCAC
i mm10.chr16                   C 0 C 0
e canFam3.chr33                 29079820 217 +  31377067 I
e papAnu2.chr2                     77882 1652 - 187378091 M

a score=5348.000000
s hg38.chr3_KI270935v1_alt        137872 2 +    197351 ca
s panTro4.chr3_GL389630_random    101247 2 +    103936 ca
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199796960 2 + 202140232 ca
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120892434 2 + 123690457 ca
i nomLeu3.chr11                C 0 I 135
s rheMac3.chrUn_JH291127           47928 2 +    111706 ca
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     83037 2 + 192460366 ca
i macFas5.chr2                 C 0 C 0
s chlSab2.chr15                   431176 2 -  91754291 ca
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   949066 2 -  74750902 CA
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65444406 0 -  98207768 C
e canFam3.chr33                 29079820 217 +  31377067 I
e papAnu2.chr2                     77882 1652 - 187378091 M

a score=8100.000000
s hg38.chr3_KI270935v1_alt        137874 9 +    197351 tcgccagca
s panTro4.chr3_GL389630_random    101249 9 +    103936 tcgccagca
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199796962 6 + 202140232 ---ccatcg
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120892571 9 + 123690457 ccaccatca
i nomLeu3.chr11                I 135 C 0
s rheMac3.chrUn_JH291127           47930 9 +    111706 acgctacca
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     83039 9 + 192460366 acgctacca
i macFas5.chr2                 C 0 C 0
s chlSab2.chr15                   431178 9 -  91754291 acactacca
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   949068 9 -  74750902 CCGTCTGCA
i calJac3.chr17                C 0 I 300
e mm10.chr16                    65444406 0 -  98207768 C
e canFam3.chr33                 29079820 217 +  31377067 I
e papAnu2.chr2                     77882 1652 - 187378091 M

a score=7393.000000
s hg38.chr3_KI270935v1_alt        137883 5 +    197351 ctacc
s panTro4.chr3_GL389630_random    101258 5 +    103936 ctacc
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199796968 5 + 202140232 ccacc
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120892580 5 + 123690457 ccacc
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           47939 5 +    111706 ccatc
i rheMac3.chrUn_JH291127       C 0 C 0
s macFas5.chr2                     83048 5 + 192460366 ccatc
i macFas5.chr2                 C 0 C 0
s chlSab2.chr15                   431187 5 -  91754291 ccatc
i chlSab2.chr15                C 0 C 0
e mm10.chr16                    65444406 0 -  98207768 C
e canFam3.chr33                 29079820 217 +  31377067 I
e calJac3.chr17                   949077 300 -  74750902 I
e papAnu2.chr2                     77882 1652 - 187378091 M

a score=35105.000000
s hg38.chr3_KI270935v1_alt        137888 23 +    197351 accaccaccaccatcatcgtcac
s panTro4.chr3_GL389630_random    101263 20 +    103936 accaccaccaccatca---tcac
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199796973 20 + 202140232 accaacgccaccatca---acac
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120892585 23 + 123690457 accactaccaccaccatcgccac
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           47944 23 +    111706 accacctccaccgccaccaccac
i rheMac3.chrUn_JH291127       C 0 I 481
s macFas5.chr2                     83053 23 + 192460366 accacctccaccgccaccaccac
i macFas5.chr2                 C 0 C 0
s papAnu2.chr2                     79541 23 - 187378091 accaccaccgcctccaccaccac
i papAnu2.chr2                 M 1652 C 0
s chlSab2.chr15                   431192 23 -  91754291 accacctccatcgccaccaccac
i chlSab2.chr15                C 0 I 3
e mm10.chr16                    65444406  0 -  98207768 C
e canFam3.chr33                 29079820 217 +  31377067 I
e calJac3.chr17                   949077 300 -  74750902 I

a score=15424.000000
s hg38.chr3_KI270935v1_alt        137911 8 +    197351 caccaaca
s panTro4.chr3_GL389630_random    101283 8 +    103936 caccaaca
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199796993 8 + 202140232 taccacct
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120892608 8 + 123690457 caccatca
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           48448 8 +    111706 caccaata
i rheMac3.chrUn_JH291127       I 481 C 0
s macFas5.chr2                     83076 8 + 192460366 caccaaca
i macFas5.chr2                 C 0 M 14732
s papAnu2.chr2                     79564 8 - 187378091 caccaaca
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   431218 8 -  91754291 caccaaca
i chlSab2.chr15                I 3 C 0
e mm10.chr16                    65444406 0 -  98207768 C
e canFam3.chr33                 29079820 217 +  31377067 I
e calJac3.chr17                   949077 300 -  74750902 I

a score=51713.000000
s hg38.chr3_KI270935v1_alt        137919 45 +    197351 ctaccatcac---------catcaccatcaccaccaccaccaccaacactacca
s panTro4.chr3_GL389630_random    101291 45 +    103936 ctaccaccac---------catcaccatcaccaccaccaacactaccaccacca
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199797001 45 + 202140232 ccaccaccac---------caccatcgccgccatcaccatcaccaacaccacct
i ponAbe2.chr3                 C 0 C 0
s nomLeu3.chr11                120892616 54 + 123690457 ccaccatcaccattgccaacatcaccatcgccaacatcaccaccaccactacca
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           48456 42 +    111706 ---ccaccac---------caccaccgccaccaccaccaccaccactaccacca
i rheMac3.chrUn_JH291127       C 0 I 3
s papAnu2.chr2                     79572 36 - 187378091 ---------c---------taccaccattgccaccaccaccaacactaccacca
i papAnu2.chr2                 C 0 I 3
s chlSab2.chr15                   431226 45 -  91754291 ctaccaacac---------tgccaccatcaccacttccaccaccaccaccacca
i chlSab2.chr15                C 0 I 6991
e mm10.chr16                    65444406  0 -  98207768 C
e canFam3.chr33                 29079820 217 +  31377067 I
e calJac3.chr17                   949077 300 -  74750902 I
e macFas5.chr2                     83084 14732 + 192460366 M

a score=111622.000000
s hg38.chr3_KI270935v1_alt        137964 119 +    197351 ccaccatcaccatcaccaccaccatcaccatcaccaccaccatcaccatcaccaccat---cattgccaccaccatcatcaccaccatcaccaccac----ca---ccaccatcaccaccaccaccatc
s panTro4.chr3_GL389630_random    101336 122 +    103936 tcaccatcaccaccaccaccatcatcatcaccatcaccaccatcaccatcaccaccaccaacactaccaccaccaccaTCACTGCCACACCCAACAC----TA---CCACCATTGCCACCAccaccatc
i panTro4.chr3_GL389630_random C 0 C 0
s ponAbe2.chr3                 199797046 123 + 202140232 ccaccaccaccatcaccaccaccaacaccacctccaccaccaccatcaccaccaccaa---cactaccacctccaccaccaccaccatcaccatcacaccaca---ccaccatcaccaccaccatcatc
i ponAbe2.chr3                 C 0 M 30000
s nomLeu3.chr11                120892670 119 + 123690457 ccaccaccaccatcaccaccaccatcaccaccaccaccaccatcaccaccatcgccac---caccaccattgccaacatcaccaccatcgccaccat----ca---ccaccaccaccaccaccaccacc
i nomLeu3.chr11                C 0 I 3
s rheMac3.chrUn_JH291127           48501 119 +    111706 ccaccatcaccaccattaccaccatcaccacttccaccaccaccaccaacactaccac---catcagcactaccaccaacaccaacactaccaccat----cg---ccaccactgccaccaccaccact
i rheMac3.chrUn_JH291127       I 3 C 0
s papAnu2.chr2                     79611 120 - 187378091 ccaccatcaccaccattaccacca--aacacttccaccaccaccaccaacactaccac---catcagcaccaccaccaacaccaacactaccaccat----cgccaccaccaccgccaccaccaccact
i papAnu2.chr2                 I 3 C 0
e mm10.chr16                    65444406   0 -  98207768 C
e canFam3.chr33                 29079820 217 +  31377067 I
e calJac3.chr17                   949077 300 -  74750902 I
e chlSab2.chr15                   431271 6991 -  91754291 I
e macFas5.chr2                     83084 14732 + 192460366 M

a score=5208.000000
s hg38.chr3_KI270935v1_alt        138083 8 +    197351 gccaccat
s panTro4.chr3_GL389630_random    101458 8 +    103936 accaccac
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120892792 8 + 123690457 gccaccat
i nomLeu3.chr11                I 3 C 0
s rheMac3.chrUn_JH291127           48620 8 +    111706 gccaacac
i rheMac3.chrUn_JH291127       C 0 C 0
s papAnu2.chr2                     79731 8 - 187378091 gccaacac
i papAnu2.chr2                 C 0 C 0
e mm10.chr16                    65444406 0 -  98207768 C
e canFam3.chr33                 29079820 217 +  31377067 I
e calJac3.chr17                   949077 300 -  74750902 I
e chlSab2.chr15                   431271 6991 -  91754291 I
e macFas5.chr2                     83084 14732 + 192460366 M
e ponAbe2.chr3                 199797169 30000 + 202140232 M

a score=95987.000000
s hg38.chr3_KI270935v1_alt        138091 119 +    197351 cacccccaacaccaccaccatcaccaccatcaccaccaccat---------------caccaccatcaccaccaccatcgcca---------------------ccaccatcac---caccaccactgccacctccaccgccactaccaccac------------------------------cacca
s panTro4.chr3_GL389630_random    101466 128 +    103936 caccaccatcaccaccatcgccaccaccatcatcaccaccat---------aaccaccaccaccatcaccaccaccatcgcca---------------------ccatcacccccaacaccaccatcaccaccaccatcgccaccaccaccac------------------------------catca
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120892800 188 + 123690457 caccaccaccaccaccaccatcaccaccatcaccaccaccaccaccatcgccaccatcaccaccattgccaccaccatcgccaccgccaacactaccattgctgccaccaccaccgccatcaccattgccacctccaccaccaccatcgccaccgccactgccgccatcaccgccaccaacatcacca
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           48628 119 +    111706 taccaccaaaatcaccaccatcaccaccactaccaccatcac---------------cacttccacccccaccactatcagca---------------------ccaccatcaa---caccaaccctatcatcaccgccaccaccaccaacac------------------------------tacca
i rheMac3.chrUn_JH291127       C 0 C 0
s papAnu2.chr2                     79739 119 - 187378091 taccaccaaaatcaccaccatcaccaccactaccaccatcac---------------cacttccaccaccaccactatcagca---------------------ccaccatcaa---caccaacactatcatcaccgccatcaccaccaacac------------------------------tacca
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   438262 115 -  91754291 caccaccaacactaccaccatcgccaccaccaccaccatcac---------------cactttcaccaccac----atcagca---------------------ccaccatcaa---caccaacactatcatcaccgccaccaccaccaacac------------------------------tacca
i chlSab2.chr15                I 6991 C 0
e mm10.chr16                    65444406   0 -  98207768 C
e canFam3.chr33                 29079820 217 +  31377067 I
e calJac3.chr17                   949077 300 -  74750902 I
e macFas5.chr2                     83084 14732 + 192460366 M
e ponAbe2.chr3                 199797169 30000 + 202140232 M

a score=45849.000000
s hg38.chr3_KI270935v1_alt        138210 35 +    197351 ccaccaccaccaccaccaccacTATCGCCATCACC
s panTro4.chr3_GL389630_random    101594 35 +    103936 ccatcaccaccatcaccatcaccatcaccaccacc
i panTro4.chr3_GL389630_random C 0 I 1106
s nomLeu3.chr11                120892988 35 + 123690457 ccaccaccatcaccaccaccacTATCGCCATCACC
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           48747 35 +    111706 ccatcgccaccacgaccaccactatggccatcacc
i rheMac3.chrUn_JH291127       C 0 C 0
s papAnu2.chr2                     79858 35 - 187378091 ccatcgccaccatgaccaccactatggccatcacc
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   438377 35 -  91754291 ccatcgccaccacgaccaccactatggccatcacc
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   949377 29 -  74750902 CCACCACCAC-----CCAGCACC-TTTCCATCACC
i calJac3.chr17                I 300 C 0
e mm10.chr16                    65444406  0 -  98207768 C
e canFam3.chr33                 29079820 217 +  31377067 I
e macFas5.chr2                     83084 14732 + 192460366 M
e ponAbe2.chr3                 199797169 30000 + 202140232 M

a score=6797.000000
s hg38.chr3_KI270935v1_alt        138245 7 +    197351 GTCCCCA
s nomLeu3.chr11                120893023 7 + 123690457 GTCCGCA
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           48782 7 +    111706 aTCTGCA
i rheMac3.chrUn_JH291127       C 0 C 0
s papAnu2.chr2                     79893 7 - 187378091 atcTGCA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   438412 7 -  91754291 aTCTGCA
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   949406 7 -  74750902 GTCTGCA
i calJac3.chr17                C 0 C 0
e mm10.chr16                    65444406 0 -  98207768 C
e canFam3.chr33                 29079820 217 +  31377067 I
e macFas5.chr2                     83084 14732 + 192460366 M
e ponAbe2.chr3                 199797169 30000 + 202140232 M
e panTro4.chr3_GL389630_random    101629 1106 +    103936 I

a score=52249.000000
s hg38.chr3_KI270935v1_alt        138252 46 +    197351 GGTGTGGGGTCCGAGCATGGCCCGGGAAGGAGGAAAGCCT-GGAGCA
s nomLeu3.chr11                120893030 46 + 123690457 GGTATGGGGTCCGAGCAGAGCTCGGGAAGGAGGAAAGCCT-GGAGCG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           48789 45 +    111706 GGTGTGGGGTCCGAGCAT-GCTCAGGAAGGAGAGAAGCCT-GGAGCG
i rheMac3.chrUn_JH291127       C 0 C 0
s papAnu2.chr2                     79900 45 - 187378091 GGTGTGGGGTCCGAGCAT-GCTCAGGAAGGAGAGAAGCCT-GGAGCG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   438419 45 -  91754291 GGTGTGGGGTCCAAGCAC-GCTCAGGAAGGAGAGAAGCCT-GGAGCG
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   949413 46 -  74750902 -GTGTGGGGTTTGAGCGCGGTTCGGGGAAGAGGAAAGCCTAGAAACG
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65444406 34 -  98207768 AGTGTGG------------GTCCAGGACGGAAGGAAGTCT-GCAGCA
i mm10.chr16                   C 0 C 0
e canFam3.chr33                 29079820 217 +  31377067 I
e macFas5.chr2                     83084 14732 + 192460366 M
e ponAbe2.chr3                 199797169 30000 + 202140232 M
e panTro4.chr3_GL389630_random    101629 1106 +    103936 I

a score=913117.000000
s hg38.chr3_KI270935v1_alt        138298 765 +    197351 GCCGCCTGCAGCCCCACCCTGGGTGCCTGCTGCAGAGTGGGGACTCTTGGGCTTTTCCT-CCTCCCTGACACAAGCAGGATGATGCACCCCTGCGTGACACCTTCCTTGGGTGTACCT-GGACCGTGTGAAATTCCT--------AG--AGTTGGGTAATTCCCCTCCTTTCTCCTTCATAGCACACCAAGAAACTAGTGAAAGCAGTGTAATCAAAGGGGTAA-CCTGAACACACTC-AATGTAAGAGAAGAC-ATTTGCAGCAATTATCAAGAACAAAAGACAT--------------------------------------------GTGGCCTTCGTACTGATTGCCACACCCCAGCATATGGGAACAGAGATG------------GCGCACTGCTACATCGGAGACAG----CCTCCCAC-----ACACGGGAATCCACATTTCAACCGCCCACAGCCCCGTGCCTCCTC--TCTCCCTTCACCACC----GGCTCCATATAAGCTTTTGGGTGCCCCCTGGATAAGTGGGTAATTCTCAG-------GAAgtcaggaaggcagattctagcctcagatgtctgggttcaaatctccatgttgccacttcccagctctgggactttaggcaaattgctagtctatttgtatctcagtttcctgatctgtagaatggggatgata-------aatagtatctgcctcgtg-gggtggctgtgatcatgacatgcagtaa--tgtacacgaagt-gttagtgtcatcagtcttggctgttattatCA-----CGATATTTGAGAAGGTAAGAGAGGCCAGCTAATGTCAGTG----GAAATCAGGGAAGCCAAAGCTCTGGGAATGATTACAACT
s nomLeu3.chr11                120893076 765 + 123690457 GCCGCCTGCAGCCCCACCCTGGATGCCTGCTGCAGAGTGGGAACTCTTGGGCTTTTCCT-CCTCCCTGACACAAGCAGGATGATGCACCCCTGCGTGACACCTTCCTCGGGTGTACTT-GGACCGTGTGAAATTCCT--------AGGCAGTTGGGGAACTCCCCT---TTCTCCTTCATAGCACACCAAGAAACTAGTGAAAGCAGTGAAATCAAAGGGGTAA-CCTGAACACACTC-AATGTAAGAGAAGACCATTTGCAGCAATTATCAAGAACAAAAGACAT--------------------------------------------GTGGCCTTCGTATTGATTGCCACACCCCAGCATATGGGAACAGAGATG------------GCGCACTGCTGCGTCGGAGACAG----CCTCCCAC-----ACACAGGAATCCACATTTCAACCACCCACAGCCCCGTGCCTCCTC--TCTCCCTTTACCACC----GGCTCCATATAAGCTTTTGGGTGTCCCCTGGATAAGTGGGTAATTCGCAG-------GAAgtcaggaaggcagattctagcctcagatgtctgggttcaaatctccatgttgccacttcccagctctgggactttaggcaaattgctagtctatttgtatctcagtttcctgatctgtagaatggggatggta-------agtagtatctgcctcatg-gagtggctgtgatcatgacatgcaataa--ggtacataaagt-gttagTGTAATCAGTCTTGGCTGTTATTATCA-----CGATATTTGAGAAGGTAAGAGAGGCCAGCTAATGTCAGTG----GAAATCAGGGAAGCCAAAGCTCTGGGCATTATTACAAGA
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           48834 796 +    111706 GCGGCCTGTAGCCCCATCCTGGGTGCCTGCTGCAGAGTGGGGACTCTTGGGCTTTTCCT-CCTCCCTGACACAAGCAGGATGACGCACCCCTGTGTGACACCTTCCTTGGGTGTACTT-GGACCATGTGAAATTCCT--------AGGCAGTTGGGTAATTCCCCTCCTTTCACCTTCACAGCACACCAAGTAACCAGTGAAAGCAGTGTAATCAAAGGGGTAA-CCTGAGCACATTC-AGTGTAGGAGAAGACCATTTGCAGCAATTATCAAGGACAAAAGACatcgcttctcggccttttggctaagatcaagtgaagAACAAGACATGTGGCCTTTGCACTGATTGCCACACACCAGCATATGGG-ACAGAGACG------------GTGCACTGTTGCATCGGAGACGG----CCTCCCAC-----ACACGGAAATCCATATTTCAACCGCCCACAGCCCCGTGCCTCCTC--TCTCCCTTCACCACC----AGCTCCTTATAAGCTTTT-GGTGCCCCCTGG----------AATTCTCAG-------GAAgtcgggaaggcagattctagcctcagatgtctgggttcaaat---cacattgccacttcccagctctgggactttaggcaaattgtcagtctatttgtatctcagtttcctgatctgtagagtggggatgata-------aatcgtatccgcctcatg-gggtggttgtgatcatgacatgcaataa--tgtacgtgaagt-gttagTGTCATCAGTCTTGGCTGTTATTATCA-----TGATATTTGAGAAGGTAAGAGAGGCCAGCTAATGT-AGTG----GAAATCAGGGAAGCCAAAGCTCTGGGAATTATTACAACG
i rheMac3.chrUn_JH291127       C 0 C 0
s papAnu2.chr2                     79945 795 - 187378091 GCGGCCTGTAGCCCCATCCTGGGTGCCTGCTGCAGAGTGGGGACTCTTGGGCTTTTCCT-CCTCCCGAACACAAGCAGGATGACGCACCCCTGTGTGACACCTTCCTC-GGTGTACTT-GGACCATGTGAAATTCCT--------AGGCAGTTGGGTAATTCCCCTCCTTTCACCTTCATAGCACACCAAGTAACCAGTGAAAGCAATGTAATCAAAGGGGTAA-CCTGAGCACACTC-AGTGTAGGAGAAGACCATTTGCAGCAATTATCAAGGACAAAAGAcatcgcttctcggccttttggctaagatcaagtgaagaACACGACATGTCGCCTTTGCACTGATTGCCACACACCAGCATATGGG-ACAGAGACG------------GTGCACTGTTGCATCGGAGACGG----CCTCCCAC-----ACACGGAAATCCATATTTCAACCGCCCACAGCCCCgtgcttcctc--tctcccttcaccACC----AGCTCCTTATAAGCTTTT-GGTGCCCCCTGG----------AATTCTCAG-------GAAGTCGGGAAGGCAGATTCTAGCCTCAGATGTCTGGGTTCAAAT---CACATTGCCACTTCCCAGCTCTGGGACTTTAGGCAAATTGTCAGTCTATTTGtatctcagtttcctgatctgtataGTGGGGATGATA-------AATCGTATCCGCCTCATG-GGGTGGTTGTGATCATGACATGCAATAA--TGTAAGTGAAGT-GTTAGTGTCATCAGTCTTAGCTGTTATTATCA-----TGATATTTGAGAAGATAAGAGAGGCCAGCTAATGT-AGTG----GAAATCAGGGAAGCCAAAGCTCTGGGAATTATTACAACG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   438464 796 -  91754291 GCGGCCTGTAGCCCCATCCCGGGTGCCTGCTGCAGAGTGGGGACTCTTGGGcttttcct-cctccctgacacaagcaggatgacgcacccctgtgtgacaccttcctcggatgtactt-ggaccatgtgaaattcct--------aggcagttgggtaattcccctcctttcaccttcatagcacaccaagtaactagtgaaagcagtgtaatcaaaggggtaa-cctGAGCACACTC-AGTGTAGGAGAAGACCATTTGCAGTAATTATCAAGAACGAAAGACatcgcttctcggccttttggctaagatcaagtgaagAACAAAAGACGTGGCCTTTGCACTGATTGCTACACACCAGCATATGAG-ACAGAAACG------------GTGCACTGTTGCGTTGGAGACGG----CCTCCCAC-----ACACGGAAATCCATATTTCAACCGCCCACAGCCCCGTGCCTCCTC--TCTCCCTTCACCACC----AGCTCCTTATAAGCTTTT-GGTGCCCCCTGG----------AATTTTCAG-------GAAgttgggaaggcagattctagcctcagatgtctgggttcaaat---cacattgccacttcccagctctgggactttaggcaaattgtcagtctatttgtatctcagtttcctgatctgtagagtggggatgata-------aatcgtatctgcctcatg-gggtggttgtgatcatgacatgcaataa--tgtacatgaagt-gttagtgtcatcagtcttggctgttattatCA-----TGATATTTGAGAAGGTAAGAGAGGCCAGCTAGTGT-AGTG----GAAATCAGGGAAGCCAAAGCTCTGGGAATTACTACAACG
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   949459 761 -  74750902 GCTGCTTGCAGCCCCACCCTGGGTGCC--------------------TGGGCTTTTCCTCCCTCCCTGACACAAGTGGGATGGTGCACCCCTGCGTGGCACCTTCCTCGGGCGTACGT-GGACCATGTGACA-TCCC--------AGGTAGTTGGGCACTTCCACTCCTTACTCCTTCATAGCACACCAAA-AACTAGCGACAGCAGTGTGACTAAAGGGGTGA-CCTGAACACACTT-GTTGTAAGGGAAGAACATGCGCTGCAATGATCAAGAACAAGAGACAT--------------------------------------------GTGACCTTCACACCGACTGCCACACACCAGCCTGTGGGAACAGAAGCAGGGAGCAGAAGTGGGCACCGTCACGTCGGAGAGAG----CCTCCTCCACGAGACAGGGGAATCCACATTCCAACCACCCACGGCCCCCTGCTTCTTC--TCTCCCCTCACCACC----GGCTTCGTTTAAGCTTTCGGGTGCCCCCTGGGTGAGTGAGTAATTCTCAG-------GAAgtcaggaaggcagattctagcctcagacgtctgggttcaaacctccatgttgccacttcccagctctgggacttgaggcaaattgctagtctatttgtagctcagtggcccgatccgtagaatgtggataata-------aatagtgtctgcctcatg-ggg-ggtcgtgagaagcaaatgcaacaa--tgtccacgaagt-gttagtgcaatcagccttgcatgtTGCTATCG-----TGATATCTGAGAAGTTAAGAGAGGCCAGCTGATGTCAGCG----GAAATCAGGGAAGCCAGAGCTCT-GGAATTATTACAAT-
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65444440 618 -  98207768 GCAGCCT-CACTGCTACTACAGGAGCATGCCCACAGAAAGCGACTCCTGGTCTTTG-CT-CTATAGTCACGCAGGCTAGAGGACAAATACATGCATGATGTC-CAGTTGGGTTTACTGAGGACAGTGTGGAATTGCT--------AGCTGCCTGAGTAATTACATGCTTTCTTCCTTCATTGCACATCAAA-AGTCAGTCAAAGCCATGCTA-------GGCAG-GCCGAACACACCCTAATGTAAAAGAAACCCATCTGTGACAACCACC---------------------------------------------------------------------------------------------------CAGTAACA------------GATCA------------------------TGCCAC------------------------AGCCAGCCACGGCCCT---TCTCCTC--ACCTCCTTC--------------CCATCTAACAACCTGCGT------------------------------------------GGATCACAAATTCCACtctggagggcctgtgttctgatgcccactttgccactttgaaactctctgactttgggcaaatgactcatctgcttgaacctaggtttccttacctataggataagggttttatctgtaggatagttgtCAACTATCGTTGGTGGCTGTGATCACCAAAGAAAACAAACAGTAAATAAA-----TAATGT-ATATGTCGTAATAGGTATAATAAGTGGCTACTAGCTGAGAA----------GTCAGCTAATGTCAGTGGAAAGAAACCAAGGAGGTCAAAGGTTAAAGGACTCCGGTA---
i mm10.chr16                   C 0 C 0
s canFam3.chr33                 29080037 737 +  31377067 GCCGCGAGGAGCACCCCCC--GGCGCTTCTCTGGGAGGGGAGCCTGCAGCCCCCCACCC-CCTGTGTGACACGGGCCAGGCGGGCCACAC--GGCGGACACCCGCCCAAGGCGTACTC-GGGACGTGCGACAGCCCTCGCGCCCCAGCGAGCCGGCCGATTCCAGCCCTTTGCCCCTCTAAGCGCATCAGAAAGAGAGCGAAGGCGGTGGAATGACGGGGTCAGCCCTGGTCACAAGC--------------------------------CGGGGGTACGGGAC----------------------------------------------GTGCCCTTCACAACCGGTGGCTCACCCGAGC-----GGTGTTGAGACC-------------CGCG-------GTCAGAGACTGAGTCACCCCCAC-----ACACAGGAGTCTGCG----GCGCCCCCGCAGCCCCTTGCCTGCTCTGTCTGCCTTTCCCCCCACCGGACCCCGCCCAAGCCCCC-CGGGTGCCCCGGGTCACAGGCTGGTGCTCAGCCCACCaggggtcacgaaggcagagcttggcctcaaccggcggggggccagttcctgcttggccacctc-cagctctgggacttggggc-aattccagatccattt-tacctccgctttcttatctgtagaatgggca--gta-------aagagtagccccttcatg--ggtggtggtgatgattaaatgaaataa--tgcatattaagtagttagtgtaataaatggtggctattattattattA--CAGTACTTGAGAGGTCGAGAGAGGTTAGCTAAGGACAGTA----GAACTCGGGGAAGTCAACGCTCCGGGAATTATTATAAGG
i canFam3.chr33                I 217 C 0
e macFas5.chr2                     83084 14732 + 192460366 M
e ponAbe2.chr3                 199797169 30000 + 202140232 M
e panTro4.chr3_GL389630_random    101629 1106 +    103936 I

a score=1417928.000000
s hg38.chr3_KI270935v1_alt        139063 672 +    197351 CACGGGGACTGGGATGGGAAAGGGCATGGC-GGACAAATGGGTG---ATCTTGTCATGGGAAGCAGCCAGATGCCTGGCCCCAGCGGGAGCTGGAGTCAGCGTGAGTCAGAAGCACCAGCCAGGAGGGTTCCCGCCTTGCCCC--AGGATGGGA----GTGTGTGTGCAGC-GAAAGCCGACTCT-ACA-CCCCTCCCTGCCAACTGCTCAGTGCTGAC----AGCCCCTCCC-ATCCTACCTAGAGAAGCCCATGAGCACCGGGTTGCCTGAGCGCTGGGCCACGTCCCACTGCATCCCACCGCTCTGGTAGAGAAACAGGGCATAGGACCTGCTCCCGTCCGTGGAGAGGATGGCTTGGTAGGTGTTGCTCTGGGGGTGGGTGGAAGA-AAACACAGGGATGCCCGTGAGAGATCCGGGGTCTCCTCTCTTATGTCCCCCCGCCCGTCCCACAGCCCTGCTCTGACAC--GCACAGCACCTGTTCCTGGTCTGCCCACAGCAAAGACATGGG-CCCAAAATGCTG---GCAAGTTTTGGGTCAGTGAGGGCAGCTTTCACCCT--GGGTGCGAA-----CGCACTT-------------------------------------ACCACGGTGGATTTGCCTT-TTGGTGAC------TTTCTTCCAGGAGGGGA-GATAAAGGGTTCTGGGTTACAATT---CAGTTAGATGAGTGTTTGTTAGAGAAAGCTACC-------AGAACCT--GAGATCAG
s panTro4.chr3_GL389630_random    102735 672 +    103936 CACGGGGACTGGGATGGGAAAGGGCATGGC-GGACAAATGGGTG---ATCTTGTCATGGGAAGCAGCCAGATGCCTGGCCCCAGTGGGAGCTGGAGTCAGCGTGAGTCAGAAGCACCAGCCAGGAGGGTTCCCGCCTTGCCCC--AGGATGGGA----GTGTGTGTGCAGC-GAAAGCCGACTCT-ACA-CCCCTCCCTGCCAACTGCTCAGTGCTGAC----AGCCCCTCCC-ATCCTACCTGGAGAAGCCCATGAGCACCGGGTTGCCTGAGCGCTGGGCCACGTCCCACTGCATCCCACCGCTCTGGTAGAGAAACAGGGCATAGGACCTGCTCCCGTCCGTGGAGAGGATGGCTTGGTAGGTGTTGCTCTGGGGGTGGGTGGAAGC-AAACACAGGGATGCCCGTGAGAGATCCGGGGTCTCCTCTCTTATGTCCCCCCGCCCGTCCCACAGCCCTGCTCTGACAT--GTACAGCACCTGTTCCTGGTCTGCCCACAGCAAAGGCATGGG-CCCAAAATGCTG---GCAAGTTTTGGGTCAGTGAGGGCAGCTTTCACCCT--GGGTGTGAA-----CGCACTT-------------------------------------ACCACGGTGGATTTGCCTT-TTGGTGAC------TTTCTTCCAGGAGGGGA-GATAAAGGGTTCTGGGTTACAATT---CAGTTAGATGAGTGTTTGTTAGAGAAAGCTACC-------AGAACCT--GAGATCAG
i panTro4.chr3_GL389630_random I 1106 C 0
s nomLeu3.chr11                120893841 714 + 123690457 CACGGGGACTGGGATGGGAAGGGGCATGGC-GGACAAATGGATG---ATCTTGTCATGGGAAGCAGCCAGATGCCTGGCCCCAGTGGTAGCTGGAGTCAGCGTGAGTCAGAAGCACCAGCCAGGAGGGTTCACGCCTTGCCCC--AGGATGGGA----GTGTGTGTGCAGC-GAAACCTGACTCT-ACA-CCCCTCCCTGCCATCTACTCAGTGCTGAC----AGCCCCTCCC-ATCCTACCTGGAGAAGCCCATGAGCACCAGGTTGCCTGAGCGCTGGGCCACGTCCCACTGCATTCCACCGCTCTGGTAGAGAAACAGGGCATAGGACCTGCTCCCATCCGTGGAGAGGATGGCTTGGTAGGTGTTGCTCTGGGGGTGGGTGGAAGC-AAACACAGGGATGCCTGTGAGAGATCCGGGGTCTCCTCTCTTATGTCCCCCCACCCATCCCACAGCCCTGCTTGGACAT--GTACAGCAGCTGTTCCTAGTCTGCCCACAGCAAAGGCATGGG-CCCAAAATGCTG---GCAAGTTGTGGGTCAGTGAGGGCAGCTTTCACCCT--GGGTGTGAACTTACCACACTTACCCTGGGTGTGAACTTTTCACCCTGGGTGTGAATCCACCACGGTGGATTTGCCTT-TTGGTGAC------TTTCTTCCAGGAGGGGA-GATAAAGGGTTCTGGGTTACAATT---CAGTTACATCAGTGTTTGTAAGAGAACGCTACC-------AGAACCT--GAGATTAG
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           49630 672 +    111706 CACAGGGACTGGGATGGGAGAGGGCGTGGT-GGACAAATGGGTG---TTCTTGTCGTGGGAAGCAGCCAGATGCCCGGCCCCAGCGGGAGCTGGAGTCAGCGTGAGTCAGAAGCACCAGCCAGGAGGGTTCACATCTTG-CCC--AGGGTGGGA----GTGTGTGTGCAGT-GAAACCCCACTCT-GCA--CCCTCCCTGCCATCTGCTCAGTGCTGAC----AACCCCTCCC-ATCCTACCTGGAGAAGCCCATGAGCACGAGGTTGCCTGAGCGCTGGGCCACGTCCCACTGCATCCCACCGCTCTGGTAGAGAAACAGGGCATAGGACCTGCTCCCGTCTGTGGAGAGGATGGCCTGGTAGGTGTTGCTCTGGGGGTGGGTGGAAGA-AAACACAGGGATGCCCGTGAGAGATCCGGGGTCTCCTCTCTTATGTCCACCCGCCCGTCCCACAGCCCTGCCTGGACAT--GTACAGCACCTGTTCCTGGTCTGCCCACAGCAAAGGCATGGG-CCCAAAATGCTG---GCAAGTTTTGGGTCAATGAGGGCAGCTTTCACCCT--GGGTGTGAA-----CACACTT-------------------------------------ACCACAGTGGATTTGCCTT-TTGGTGAC------TTTCTTCCAGGAAGGGA-GAGAAAGGGTTCTGGGTTATAATT---CAGTTAGATGAGTGTTTGTAAGAGAAAGCTACC-------AGAACCTGAGAGATCAG
i rheMac3.chrUn_JH291127       C 0 C 0
s papAnu2.chr2                     80740 673 - 187378091 CACAGGGACTGGGATGGGAGAGGATGTGGT-GGACAAATGGGTG---TTCTTGTCGTGGGAAGCAGCCAGATGCCCGGCCCCAGCGGGAGCTGGAGTCAGCGTGAGTCAGAAGCACCAGCCAGGAGGGTTCACATCTTGCCCC--AGGGTGGGA----GCGTGTGTGCAGT-GAAACCCCACTCT-GCA--CCCTCCCTGCCATCTGCTCAGTGCTGAC----AACCCCTCCC-ATCCTACCTGGAGAAGCCCATGAGCACGAGGTTGCCTGAGTGCTGGGCCACGTCCCACTGCATCCCACCGCTCTGGTAGAGAAACAGGGCATAGGACCTGCTCCCGTCTGTGGAGAGGATGGCCTGGTAGGTGTTGCTCTGGGGGTGGgtggaaga-aaacacagggatGCCCGTGAGAGATACGGGGTTTCCTCTCTTATGTCCCCCCGCCCGTCCCACAGCCCTGCCTGGACAT--GTACAGCACCTGTTCCTGGTCTGCCCACAGCAAAGACATGGG-CCCAAAATGCTG---GCAAGTTTTGGGTCAATGAGGGCAGCTTTCACCCT--GGGTGTGAA-----CACACTT-------------------------------------ACCACGGTGGATTTGCCTT-TTGGTGAC------TTTCTTCCAGGAAGGGA-GATAAAGGGTTCTGGGTTATAATT---CAGTTAGATGAGTGTTTGTAAGAGAAAGCTACC-------AGAACCTGAGAGATTAG
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   439260 672 -  91754291 CGCGGGGACTGGGATGGAAGAGGGCGTGGT-GGACAAATGGGTG---TTCTTGTCGTGGGAAGCAGCCAGATGCCCGG-CCCAGCGGGAGCTGGAGTCAGTGTGAGTCAGAAGCACCAGCCAGGAGGGTTCACATCTTGCCCC--AGGGTGGGA----GCGTGTGTGCAGT-GAAACCCCACTCT-GCA--CCCTACCTGCCATCTGCTCAGTGCTGAC----AACCCCTCCC-ATCCTACCTGGAGAAGCCCATGAGCACGAGGTTGCCTGAGCGCTGGGCCACGTCCCACTGCATCCCACCGCTCTGGTAGAGAAACAGGGCATAGGACCTGCTCCCATCTGTGGAGAGGATGGCCTGGTAGGTGTTGCTCTGGGGGTGGGTGGAAGA-AAACACAGGGATGCCCGTGAGAGATCCGGGGTTTCCTCTCTTATGTCCCCCTGCCCGTCCCACAGCCCTGCCTGGACAT--GTACAGCACCTGTTCCTGGTCTGCCCACAGCAAAGGCGTGGG-CCCAAAATGCTG---GCATGTTTTGGGTCAATGAGGGCAGCTTTCACCCT--GGGTGTGAA-----CGCACTT-------------------------------------ACCATGGTGGATTTGCCTT-TCAGTGAC------TTTCTTCTGGGAAGGGA-GATAAAGGGTTCTGGGTTCTAATT---CAGTTAGATGAGTGTTTGCAAGAGAAAGCTACC-------AGAACCTGAGAGATTAG
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   950220 634 -  74750902 GACGGGGACTCAGATGGGAAAGGGAATGAT-GGACAAATGGGTG---ATCTTTTCATGTGAAGCAGC---------------------------AGCCAGAGTGAGTCAGAAGCATCAGCCAGGTGGGTTTATGCCCGG-CCC--AGGATGGGC----ATGTGTGTGCAGT-GAAACCCCGCTCT-GCA--CCCCTCTTGCCATCTGCTCAGTGCGGAC----AGCCCCTCCC-ATCCTACCTGGAGAAGCCCATGAGCACCGGGCTGCCTGCGTGCCGGGCCGCGTCCCACTGCATCCCACCGCTCTGGTAGAGAAACAGGGCATAGGACCTGCTTCCGTCCGTGGAGAGGATGGCCTGGTAGGTGTTGGTCTGGG----------AGC-AAACACAGGGATGCCGGTGAGTGA-CCGGGGTCTCCTCTCTTACGTCCTCCCACCCGTCCCACAGCGCTGCTCTGACGT--GCACATCACCTGTTCCAGGTCTGCCCACAGCAAAGGCATGGGCCCCAAAAGGCGG---GCAAGTTTCTGGTCAGCTAGGGCAGC-ATCACCCT--GGGTGGGAA-----AGCACTT-------------------------------------ACCACGGTGTATTTGCCTT-TTTGTGAC------TATCTTCCAGGAGGGGA-GATAAAGGGTTCTGGGTTATAATT---CAGTTAGATAAGTCTTTATAAGAGGAAGCTACC-------AGAACCTGATCGCTGAG
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65445058 586 -  98207768 CACAAGTGTTGGAATGGGGACAG---TGCCAGGATGAGTGGGGG---GGTT--TCATCAGGAAGAGCTACAT----------------------ATTCA----------------------AGGA-----------------C--GGGATAGGA----GTGTGAGCAGGGC--ACACTTAGCTCTCGCA-----------------GTCCAGTGCTGACGGCAAGCCCATCCC-GTCTTACCTGGAGAAGCCCATGAGCACCCGGTTGTATGGTTCCTGGGTCACATCCCACCTCATGCCACTGTTCTGGTAGAGAAACAGGGCATAGGACCTGCTCCCATCTGTGGAGAGGATGGCTTGGTAGGTATTGGTCTGGAAGTTGGGGAGAG----ACAAACAGATGTCATTGAGAGATCTGAGGTTTCCTCCCTGGTGTC----------TCCCACACCTCTGAGCAGACACAGGGACGTCACCTATTCCTGGTCCATC-------------TGGG-CTGCACCTGCTGCGTGCTTGCTGTG-----ATTAGAGTAACACTTACCCT--GGGTGCAGA-----AGATCTT-------------------------------------AGCATGCCCTATTTTCCTTCCTTGTAACTTTTTTTTTTTTCAGGGAGAGGA-AATAAAGGGCTGTGGGTTggggctggagagatggctgagtggttaagagcactgactgctcttccaaaggtcct--gagttcaa
i mm10.chr16                   C 0 I 538
s canFam3.chr33                 29080774 652 +  31377067 CATGAGTACTGGGGTGGGAAAGAGAATGGC----CCAGTGGATGGGTATCTTTTCATTTGAAACAGCAAGA-----------AGGGGGGATTGGAGCAGGCGTGGGTCAGAAACGTCAATAAGAAGGATTCATACCCTGTCCCGGGGGATGGGAGGAGGTGTGTGTGCCTCAAAAACCTGACCCT-GCCACCACCTCCCATTACGTGCTCAGCGCTGGC----CGTCCATCCCTGTCCTACCTGGAGAAGCCCATGAGCACCGGGTTGCCTGGGCGCTGGGTCACATCCCACTGCATGCCGCCGCTCTGATAAAGAAACAGGGCGTAGGACCTGCTGCCGTCTGTGGAGAGGATGGCCTGGTAGGTGCTGGTCTGGAGGTTTGTTGAAGACAAACACAGGGATGCCTGTGAGCGATCTGGGGTCTCCTCCCCAATGTCCCATCACCCTCCCCACAACCCTGCCCCGATAC--ACACATCCTCTTTCCCTAGCCTACTCAGAGCAAA--CTTGGG-------ATTGTG--------------------CAGGGCAGCTTTCCCCCCCGGGCTGTCAA-----AGCGTCT-------------------------------------ACCGTGGTGGACCTGCCTTTTTTGTGAC------TTCTGTCCAGGAAGGGGTGATAAAGCGTTCTGGTTTAGGATC---CAGTCAGAAGAGAGTTTGTGTGAGAAAGCCTCA-------GGACTCAGAAAGATTAG
i canFam3.chr33                C 0 C 0
e macFas5.chr2                     83084 14732 + 192460366 M
e ponAbe2.chr3                 199797169 30000 + 202140232 M

a score=797257.000000
s hg38.chr3_KI270935v1_alt        139735 427 +    197351 CCAAGATACCAGAGAGCTAGAGAGGAGGCTTCATTAGCTCCCGCGCGGATATT--TAAGGACATTGCCCAAATTGTCTCCTCCATCTAAACAGCATGGA-------------TGACACTGG-GGTTCACTGAAGGCGCAcac-----------gttgtccacagtaggtgaccagtgaacttttgtcgagtgaatgaaGAAATGAGTGACTTTAGACCAGGCATAAGGAAGAACTTGGTGACTACAAGAGCGGGGTCCTCGGAGGGAGGACAGAGGAGATGGTGTGGCGCACCCTGTGCC--CGTTGGATGAGCCTGTGCTTCagagccagaggctggagtcagaagaagctccact-caggcctggctttgccatttgccagcggcgtgactctgaacgagttacttaacctctctaaccattgtcttcctcatctgtaaaatggggagcataata
s panTro4.chr3_GL389630_random    103407 427 +    103936 CCAAGATACCAGAGAGCTAGAGAGGAGGCTTCATTAGCTCCCGCGCGGATATT--TAAGGACATTGCCCAAATTGTCTCCTCCATCTAAACAGCATGGA-------------TGACACTGG-GGTTCACTGAAGGCGCAcac-----------gttgtccacagtaggtgaccagtgaacttttgtcgagtgaatgaaGAAATGAGTGACTTTAGACCAGGCATAAGGAAGAACTTGGTGACTACAAGAGCGGGGTCCTCGGAGGGAGGACAGAGGAGATGGTGTGGTGCACCCTGTGCC--CGCTGGATGAGCCTGTGCTTaagagccagaggctggagtcagaagaagctccact-caggcctggctttgccatttgccagcggcgtgactctgaacaagttacttaacctctctaaccattgtcttcctcatctgtaaaatggggagcataata
i panTro4.chr3_GL389630_random C 0 C 0
s nomLeu3.chr11                120894555 427 + 123690457 CCAAGATACCAGAGAGCTAGAGAGGAGGC-TCATTAGCTCCCTTGCGGATAGT--TAAGGACATTGCCCAAATTGTCTCCTCCACCTGAACAGCATGGA-------------TGACACTGG-GGTTCACTGAAGGCGCACAC-----------GTTGTCcacagtaggtgaccagtgagctttcgtcgagtgaatgaaGAAATGAGTGACTTTAGACCAGGCGTAAGGAAGAACTTGGTGACTACAAGAGCGGGGTCCTCGGAGGGAGGACAGAGGAGACAGTGTGGTGTGCCCCGTGCC--CACTGGATGAGCCTGTGCTTaagagccagaggctggagtcagaagaagctccactgcaggcctggctttgccatttgccagcagcgtgactttgaacaagttacttaacctctctaaccattgtcttcctcatctgtaaaatggggatcataata
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           50302 426 +    111706 CCAAGATACCAGAGAGCTAGAGAGGAGGCTTTGTTAGCTCCCTCGCGGATATT--TAAGGACATTGTCCAAATTGTCCCCTCCACCTGAACAGCATGGA-------------TGACACTGG-GGTTCACTGAAGGTGCACAC-----------GTTGTCcacggtaggtgactagtgaacttttgtcaagtgaatgaaGAAatgagtgactttagatcagacataaggaagaacttggtgactacaagagC-GGGTCCTCGGAGGGAGGACAGAGGAGATGGTGTGGTGTGCCCCATGCC--CGTTGGATGAGCCCATGCTTAATGGCCAGAGGCtggagtcagaagaagctccactgcaggcctggcgttgccatttg-cagtggcatgactttgagcaagttacttaacctctctaaccattgtcttcctcatctgtaaaatgtggatcagaata
i rheMac3.chrUn_JH291127       C 0 C 0
s papAnu2.chr2                     81413 427 - 187378091 CCAAGATACCAGAGAGCCAGAGACAAGGCTTCGTTAGCTCCCTCGCGGATATT--TAAGGACATTGTCCAAATTGTCCCCTCCACCTGAACAGCATGGA-------------TGACACTGG-GGTTCGCTGAAGGCGCACAC-----------GTTGTCCATGGTAGGTGACCAGTGAACTTTTGTCaagtgaatgaagaaatgagTGACTTTAGATCAGACATAAGGAAGAACTTGGTGACTACAAGAGC-GGGTCCTCGGAGGGAGGACAGAGGAAATGGTGTGGTGTGCCCCATGCC--CATTGGATGAGCCTGTGCTTAACGGCCAGAGGCTGGAGTCAGAAGAAGCTCCACTGCAGGCCTGGCATTGTCATTTGCCAGGGgcatgactttgagcaagttacttaacctctctaaccattgtcttcctcatctgtaaaatgtggatcaGAATA
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   439932 426 -  91754291 CCAAGATACCAGAGAGCTAGAGAGGAGGCTTCGTTAGCTCCCTCGCGGATATT--TAAGGACATTGTCCAAATTGTCCCCTCCACCTGAACAGCATGGA-------------TGACACTGG-GGTTCGCTGAAGGCGCACAC-----------GTTGTCCGTGGTAGGTGACCCGTGAACTTTTGTCAGGTGAATGAAGAAatgagtgactttagatcaggcataaggaagaacttggtgactacaagagC-GGGTCCTCGGAGGGAGGACAGGGGAGATGGTGTGCTGTGCCCCATGCC--CATTGGATGAGCCCGTGCTTAACGGCC-GAGGCtggagtcagaagaagctccactgcaggcctggcgttgccattttccagtggcatgactttgagcaagttacttaacctctctaaccattgtcttcctcatctgtaaaatgtggatcagaata
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   950854 436 -  74750902 CCAAGATACCAGAGAGCTCGAGAGGGGACTTAATTAGCTGCCTGGGGGACATT--TAAGGACATTGCCCAAATTGTCCCCTCCACCTGAACAGCATGGATGACTGGCTCAGGTGACACTGG-GGTTTGCTGAAGGCACACGC-----------CTTGTCCGCCGGAGGTGACCGGTGAACTTCTGTTGAGTGAATGAAGAAatgagtgactttaggccaggcatgaggaagaactttgtgactacaagagcGGGGTCCGCAGAGGGAGGACAGAGGGGAGGGCGCCAGGAGCCCCATGTCAAAactgaatggctttgtgcttaagagccagaggctggagtcagaagaacctccactgcaggcctggctctgccatctgct----tcgtgac--tgagcaagtta-ttaatctctctgaccacggtcggcctccaccctataatgtggataagaatc
i calJac3.chr17                C 0 C 0
s canFam3.chr33                 29081426 436 +  31377067 CCACGACCCCAGAGAGCC-GAGA-GAGGCCTACTTAGCTTCCTCTGGGATATTTGTAAGGACATTGTTCAAA-TGTCCCCTCAACCTAAATATCGTGGATGGACCACAGAGGTGGGCCTGGAGGCTCTCTGAAGGCAGATGCCAAGCACTGTGCTTGTACAAAGTAGGAAACCAATGAACTT--GTTGAACCAATGAGGAAACGAGTGACTTTAGACCACACACAGG------------GGCTGTAAGAGCGGAGTCCCCGGGCGGAAGACTGAGGACACTGTGTGCTGTGACC-ATGGC--CACTGGCTGGCTTtgcagctgagagctggagttggaagtcagaa-agcctccattccaagcctggctttgtcactttctagctgggtgaccttgagcagattgtctaacctctctcaccgtcatcctcctcatctctaaaacgtggataataata
i canFam3.chr33                C 0 C 0
e mm10.chr16                    65445644 538 -  98207768 I
e macFas5.chr2                     83084 14732 + 192460366 M
e ponAbe2.chr3                 199797169 30000 + 202140232 M

a score=171361.000000
s hg38.chr3_KI270935v1_alt        140162 102 +    197351 ccagactgagccacgtgaaattgtgaatagc----------cagacatttttgacttacaaaaatgccacttgctatgtttcagcctaataatacccggtttgctgggctgc
s panTro4.chr3_GL389630_random    103834 102 +    103936 ccagactgagccacgtgaaattgtgaatagc----------cagacatttttgacttacaaaaatgccacttgctatgtttcagcctaaTAATACCCGGTTTGCTGGGCTGC
i panTro4.chr3_GL389630_random C 0 N 0
s nomLeu3.chr11                120894982 102 + 123690457 ccagattgagccacatgaaattgcgaatagc----------cagacatttttgacttacaaaaattccacttgctatgtttcagcctaataatacccagtttgctgggctgc
i nomLeu3.chr11                C 0 C 0
s rheMac3.chrUn_JH291127           50728 102 +    111706 cctagttgagccacatgaaattcccaagagc----------cagacatttttgacttacaaaaatgccacttgctatgtttcaacctaataatatctggtttgctgggctgc
i rheMac3.chrUn_JH291127       C 0 C 0
s papAnu2.chr2                     81840 102 - 187378091 CCCAGTTGAGCCACATGAAATTCCCAACAGC----------CAGAcatttttgacttacaaaaaTGCCAGTTGCTATGTTTCAACCTAATAATACCTGGTTTGCTGGGCTGC
i papAnu2.chr2                 C 0 C 0
s chlSab2.chr15                   440358  94 -  91754291 cccagttgagccacatgaaattcccaatagc----------cagacatttttgacttacaaaaacgccacttgctatgtttcaacctaataatatccagtt--------tgc
i chlSab2.chr15                C 0 C 0
s calJac3.chr17                   951290  98 -  74750902 ccagattgagccacgtgaaattgccaatagc----------cagacatttttgacttacagaaatgccacctactgtgtttcaacctaatgacacctggtttgctgag----
i calJac3.chr17                C 0 C 0
s mm10.chr16                    65446182  69 -  98207768 CTCGTGTAAGGCATATGAAGTCGTCAGTCAC----------CAGACATTCTTGCCT---GTAAACG-CAGCTGTTGTTTCTGA-----------------------------
i mm10.chr16                   I 538 C 0
s canFam3.chr33                 29081862  87 +  31377067 tcAGGTTGAGCCATCTCAAA-----AATGGCCGGCTACTGGCAGCCACTTCTGACTTACAAAAATTCCATTTCCTATGTTTTAAACCAGTGA--------------------
i canFam3.chr33                C 0 C 0
e macFas5.chr2                     83084 14732 + 192460366 M
e ponAbe2.chr3                 199797169 30000 + 202140232 M

a score=652035.000000
s hg38.chr3_KI270935v1_alt    140264 413 +    197351 tgtgaggtcaagtaggcaaagggccgagacaggccgggcccacggtgagtgctcagccaacagtggTGGCAGT-GGGGGGGTGGCGGT--------GGGGGGGCTTGCTATAATTAGCAA-TCTTTCCTAGAGCCAGAGAGGATTTTGGAAGAGTGGCCCCTGCCTAGGATTCTAGGATGTCTGACTCCCAGATAGCTCCT-GGGAGCTGCCCAGGGGTCTACTCACCCCGAGGGTCCACTGGGCAGGATAGGCGTGGGCACTGACCCACGTGACCTTTAGGGTCCACCTGGCCTTGTAGCCCCCGTTGTTTGTGATCTTTCTAATCCAAGACTCGGCCTGCTGGACTAGCAGGCTGTGTTCACCATAGAACGTCTCGTATTCCTAGGAAAGGAGGGCAGATGAAAACAAGCCAACGAGGGTCC
s nomLeu3.chr11            120895084 394 + 123690457 agtgaggtcaagtaggcaaagggccgaggcaggccgggcccacggtgagtgctcagccaacagtggTGGCAGT----------------------------GGCTTGCTGTAATTAGCAA-TCTTTCCTAGAGCCAGAGAGGATGTTGGAAGAGTAGCCCCTGCCTAGGATTCTAGGATGTCTGACTCCCAGATGGCTCCC-AGGAGCTGCCCACGGGTCTACTCACCCCGAGGGTCCACTGGGCAGGATAGGCGTGAGCATTGACCCACGTGACCTTTAGGGTCCACCTGGCCTTGTAGCCCCTGTTGTTTGTGATCTTTCTAATCCAAGACTCGGCCTCCTGGACTAGCAGGCTGTGTCCACCATAGAGCGTCTCGTATTCCTAGGAAAGGAGGGCAGATGAGAACAAGCCAACGAGGGTCC
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       50830 412 +    111706 ggtgaggtcaagtaggcaaagggctgaggccggccgggcccacagtgagtggtcTGCCAGCAGTGGGAGGAGC---GGGGGTGGCAGT--------GGGTGGGCTTGCTATAATTAGCAA-TCTTTCCTAGAGCCAGAGAGGATTTTGGAAGAGTAGCCCCTGCCTAGGATTCTAGGATGTCTGACCCCCAGATGGCTCCCTGGGAGCTGCCCACGGGTCTACTCACCCCGAGGGTCCACTGGGCAGGATAAGCGTGGGCATTGACCCACGTGACCTTTAGGGTCCACCTGGCCTTGAAGCCGCCATTGTTTGTGATCTTTCTAATCCAAGACTCGGTCTGCAGGACTGGCAGCCTGCGTTCACCATAGAGCGTCTCGTATTCCTAGGAAAGGAGGGCAGATGAGAACAAGCCAACGAGGGTCC
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 81942 412 - 187378091 GGTGAGGTCAAGTAGGCAAAGGGCTGAGGCCGGCCGGGCCCACAGTGAGTGCTCTGCCAGCAGTGGGAGCAGC--GGGGGGTGGCAGT--------GGGTGGGC-TGCTATAATTAGCAA-TCTTTCCTAGAGCCAGAGAGGATTTTGGAAGAGTAGCCCCTGCCTAGGATTCTAGGATGTCTGACTCCCACATGGCTCCCTGGGAGCTGCCCACGGGTCTACTCACCCCGAGGGTCCACTGGGCAGGATAGGCGTGGGCATTGACCCACGTGACCTTTAGGGTCCACCTGGCCTTGAAGCCACCATTGTTTGTGATCTTTCTAATCCAAGACTCGGCCTGCAGGACTGGCAGCCTGCGTTCACCATAGAGCGTCTCGTATTCCTAGGAAAGGAGGGCAGATGAGAACAAGCCAACGAGGGTCC
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               440452 420 -  91754291 ggtgaggtcaagcaggtaaagggctgaggcgggccgggcccacagcgagtgctcCGCCAGCAGTGGGAGCAGC--GGCGGGTGGCAGTGGGTCAGCGGGTGGGC-TGTTGTAATTAGCAA-TCTTTCCTAGAGCCAGAGAGGATTTTGGACGAGTAGCCCCTGCCTAGGATTCTAGGATGTCTGACTCCCAGATGGCTCCCTGGGAGCTGCCCACGGGTCTACTCACCCCGAGGGTCCACTGGGCAGGATAGGCGTGGGCATTGACCCACGTGACCTTTAGGGTCCACCTGGCCTTGAAGCCGCCATTGTTTGTGATCTTTCTAATCCAAGACTCGGCCTGCAGGACTGGCAGGCTGCGTTCACCATAGAGCGTCTCGTATTCCTAGGAAAGGAGGGCAGATGAGAACCAGCCAACGAGGGTCC
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               951388 400 -  74750902 ----aggtcaaataggCAAAGGGCCGAGGCAGG------CCACGGTGAGTGCTCGGCCAACAGTGGTGGCGGTAAGCAGGGTG-------------GGGTGGGCTTGCTGTAATTAGCAG-TCTTTCCTAGAGCCAGAGAGGGCTTCGGAAGAGTAGCCTCTGCCTAGAATTTGAGGATGTCTGACTCCCAGATGGTTCCCAGGGAGCTGTCCACGGATCTACTCACCCCGAGGCTCCACTGGGCAGGATAGGCGTGGGCACTGACCCACGTGACCTTTAGGGTCCACCTGGCCTTGTAGTCCCCGTTGTTTGTAATCTTTCTAATCCAAGACTCAGCCTGCAGGACTAGTGGGTTGTGTTCACCGTAGAGCGTCTCATATTCCTTGGAAAGGAGAGCAGATGAGAACAAGCCAACGAGGGTCC
i calJac3.chr17            C 0 C 0
s mm10.chr16                65446251 371 -  98207768 ----------------------CGTAAGGCAGGCCTGGCCCACTGTGGGCACTCAGTAGACCATGCTCTCGAG-----------------------GGA------TACTATAAGCAGCAATTTTTTTCTCCAGCCAGGGTGG-TCTTGAAAAGATAGCTCCCACATAGGATAATGGTATGTTCGACTCCCAAAAGGGCCAC-AGGAGCCGTTCCATGATCCACTCACCCCAAAGCTCTCTTGGGCAGTATAGGCAGGAACATTGACCCAGGTGACCTTCAGTGTCCACTTGGCTCTGTAGCCCCAGCTACTTGTGAAATCATTAATCAAAGTCTCCACTTCCCGGATTAGCTGATGGTGTTCATTGTAAAATGTGACATATTCCTAGGAAAGGAAGGTAGGTAAGAACAAGGAAGTGAGGGTCC
i mm10.chr16               C 0 I 177
s canFam3.chr33             29081949 310 +  31377067 -----------GTAT---------------------------CGGTGAGTGCTCAGCAAACAG-------GGT-----------------------GGGGGGGA-----------GGCAG---------------------------GGAA-------CCCTGCCTAGGGTTCCAGGACGTATGACTTCCAGATGGTTCGCAGGGAGTTGTCCTTTGGTCCACTCACCCCGAAGGTCCGCCCGGCAGGATAGGCAGGGGCATTGACCCAGGTGACCTTTAGGGTCCACTCGGCTTTGTAGTTCCTGGTGTCAGTGAATTTATTAATCCAAGACTCCACCTGCTGGACTAGCAGGTTGTGTTCACGATAGAGCGTGTCATATTCCTGGGAAAGGAAGGCAGA-GAAGGCAAGCAAATGAGGGTCC
i canFam3.chr33            C 0 C 0
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=8148.000000
s hg38.chr3_KI270935v1_alt    140677 3 +    197351 CAC
s nomLeu3.chr11            120895478 3 + 123690457 CAC
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       51242 3 +    111706 CAC
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 82354 3 - 187378091 CAC
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               440872 3 -  91754291 CAC
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               951788 3 -  74750902 CAC
i calJac3.chr17            C 0 C 0
s mm10.chr16                65446799 3 -  98207768 cac
i mm10.chr16               I 177 C 0
s canFam3.chr33             29082259 3 +  31377067 CAC
i canFam3.chr33            C 0 I 5
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=362243.000000
s hg38.chr3_KI270935v1_alt    140680 298 +    197351 TCCTACACATGGGC-----------------------------------------------------CCCCCACTTTCTGCCTGAGGACCCTGCCCACTTCA--GCCCACCCA-ATGGCCTGCC----CTCCCCTGTCCCAGGCCTGCATTTTTGCCGTGAGCTTTTCTGAGGTGAAGTTCAATTCAAACTTGGGCTGCAGGAAGGCCTGCAGTGTGCAGAATGCAGGGTCGTGGCCCAGACGTCCAAGACCTCTGGACTTGAACTCAAGCA--TCTTAGCTCAAACTGGCCCAGAGAGCAGAGCCACTCGGGCCCACTTTTACCTCCCCATGCCTAATCTGCAGCTTCTTGAGAACAGG
s nomLeu3.chr11            120895481 300 + 123690457 TCCTACACATGGA------------------------------------------------------CCCCCACTTTCTGCCTGGGGACCCTGCCCACTTTA--GCCCACCCACATGGCCTGCC----CTCCCCTGTCCCAGGCCTGCATTTTTGCCATGACCTCTTCTGAGGTGAAGTGCAATTCAAACTTGGGCTGCAGGAAGGCCTGCAGTGTGCAGAATGCAGGGTCGTGGCCCAGACGTCCAAGACCTCTGGACTTGAACTCAAGCGTCTCTTAGCTCAAAGTGGCCCAGAGAGCAGAGCCACTCGGGCCCACTTTTACCTCCCCATGCCTAATCTGCAGCTCCTTGAGAACAGG
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       51245 285 +    111706 TCCCGCACATGGA------------------------------------------------------CCCCCACTTTCTGCCTGGGGA-----------------CCCACCCACATGGCCTGCC----CTTCCCTGTCCCAGGCCTGCATTTTTGCCGTGAGCTCTTCTGACATGAAGTTCAATTCAAACTCGGGCTGCAGGAAGGCCTGCAGTGTGCAGAATGCAGAGTCCTGGCCCAGACGTCCAAGACCTCTGGACTTGAACTCAAGCGTCTCTTAGCTCAAACTGGCCCAGAGAGCAAAGCCACTCGGGCCCACTTTTACCTCCCCATGCCTAATCTGCAGCTCCTTGAGAACAGG
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 82357 285 - 187378091 TCCCGCACATGGA------------------------------------------------------CCCCCACTTTCTGCCTGGGGA-----------------CCCACCCACATGGCCTGCC----CTCCCCTGTCCCAGGCCTGCATTTTTGCCGTGAGCTCTTCTGACATGAAGTTCAATTCAAACTCGGGCTGCAGGAAGGCCTGCAGTGTGCAGAATGCGGAGTCCTGGCCCAGACGTCCAAGACCTCTGGACTTGAACTCAAGCATCTCTTAGCTCAAACTGGCCCAGAGAGCAAAGCCACTCGGGCCCACTTTTACCTCCCCATGCCTAATCTGCAGCTCCTTGAGAACAGG
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               440875 285 -  91754291 TCCCGCACATGGA------------------------------------------------------CCCCCACTTTCTGCCTGGGGA-----------------CCCACCCGCATGGCCTGCC----CTCCCCTGTCCCAGGCCTGCATTTTTGCCGTGAGCTCTTCTGACGTGAAGTTCAATTCAAACTCGGGCTGCAGGAAGGCCTGCAGTGTGCAGAATGCAGAGTCCTGGCCCAGACGTCCAAGACCTCTGGACTTGAACTCAAGCGTCTCTTAGCTCAAACTGGCCCAGAGAGCAAAGCCACTCGGGCCCACTTTTACCTCCCCATGCCTAATCTGCAGCTCCTTGAGAACAGG
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               951791 279 -  74750902 TCCCACCCATGGA------------------------------------------------------CTTCC---TTCTGCCTGGGGATCCTGCCCACTTTA--GCCCACCCACATGGCCTACC----CTCCCCTGTCCCAGGCCTGCGTTTTTACCATGAGCTCTTCTGAAGTGAAGTTCAATTCAAACCTGGGCTGCAGGAAGGCCTGCAGCATGTGGGATGCAGGGTCCTGGCCATGACATCCAAGACCTCTGGACTTGAA----------------CTCAAACTGTCCCAGAGGGCAGAGCCACTCGGGCCCTCTTTCACCT-CCCATGCCTAATCTG-AGCTGCTTGAGGACAGG
i calJac3.chr17            C 0 I 281
s mm10.chr16                65446802 333 -  98207768 tacaacacaaggaaccatattaaaggctcacagcattagcaggattgaaaattgctgCCCTAAGGGGTCCCCGCTTCCTTCATGGGGATGCTTATCACTTCGTTGCCCAT-------GTCTACCGGTACATCTTTTTCCCAAGTGTGAATTTTTAC---AAACCCTTATGATTTTAAAATCA-----------------AGGAGAATCTGGGACATGTGAACTAGAGGGGCTCTATCCAGAAAGCCAAGCCTTCTGGAATTGAATTGATACATCCCTTAGTTTAAAACAGCTTGCATGGTATGACCATTTGTGTCTACTTTTACATTCCCATGTCTAGCTTGTAACTCCTTAAAGACAGA
i mm10.chr16               C 0 C 0
e canFam3.chr33             29082262   5 +  31377067 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=41870.000000
s hg38.chr3_KI270935v1_alt    140978 37 +    197351 CGTGAGTCTCTTCCTC-TTGGAGCCTCCACACTGCCCT
s nomLeu3.chr11            120895781 37 + 123690457 CATCAGTCTCTCTCTC-TTGGAGCCTCCACACTGCCCT
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       51530 37 +    111706 CATGAGACGCTCCCTC-TTGGAGCCTCTACACTGCCGT
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 82642 37 - 187378091 CATGAGACTCTCCCTC-TTGGAGCCTCCACGCTGCCCT
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               441160 37 -  91754291 CATGAGACTCTCCCTC-TTGGAGCCTCCACACTGCCCT
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               952351 37 -  74750902 CGTGGTTCTCTCCATC-TTGGAGCCTTTACACTGCTCT
i calJac3.chr17            I 281 I 413
s mm10.chr16                65447135 38 -  98207768 TGCAGGTCTGTCCATCTTTGAAACCTAGGTAGAGCTTT
i mm10.chr16               C 0 C 0
e canFam3.chr33             29082262  5 +  31377067 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=115293.000000
s hg38.chr3_KI270935v1_alt    141015  91 +    197351 GTCCGTGGCAGGGGCACG-----------------------------GTCCACACTTCCTGCAGTAGCTTTCATCACAT--TTCCTCTGATTGGAGTTATTCACCCAGTCCAGGAGCACAGG
s nomLeu3.chr11            120895818  93 + 123690457 ATCCGTGGCAGGGGCATG-----------------------------GTCCACACTTCCTGCAGTAGCTTTCATCACATGCTTCCTCTGATTGGAGTTATTCACCCAGTCCAGGAGCACAGG
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       51567 122 +    111706 GTCCATGGCAGGGGCATGGTCCACACTTCGTCCATGGCAGGCACATGGTCCACACTTCCTGCAGTAGCTTTCATCACGTGCTTCCTCTAACTGGAGTTATTCACCCAGTCCAGGAGCACAGG
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 82679 122 - 187378091 GTCCATGGCAGGGGCACAGTCCACACTTGGTCCATGGCAGGCACATCGTCCACACTTCCTGCAGTAGCTTTCATCACGTGCTTCCTCTAATTGGAGTTATTCACCCAGTCCAGGAGCACAGG
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               441197 122 -  91754291 GTCCATGGCAGGGGCACGGTCCACACTTCGTCCATGGCAGGCACATGGTCCACACTTCCTGCAGTAGCTTTCATCACGTGCTTCCTCTCATTGGAGTTATTCACCCAGTCCAGGAGCACAGG
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               952801  93 -  74750902 GCCCGTGGCAGGGGCACA-----------------------------GTCCACGCTTGCCACAGTGGCTTTCGTCACAGGCTTCCCCTGCTTGGCGTTACTAACCCAGTCCAGGAGCCCAGG
i calJac3.chr17            I 413 C 0
s mm10.chr16                65447173  93 -  98207768 GTCAGCGGCAGGCACACA-----------------------------AAATGTATTTGCTATGACAGCCTCTGCTCTGCACGTTCACAGGCTGGCATTATTAACTTAATTCAGGAGTGTTGG
i mm10.chr16               C 0 I 20
e canFam3.chr33             29082262   5 +  31377067 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=72614.000000
s hg38.chr3_KI270935v1_alt    141106 63 +    197351 ACGGGCCCT-CTTGACTCACTCTTGTTAGGATAGACCCCCTACAGCCTGATTTTACAATCAAAG
s nomLeu3.chr11            120895911 63 + 123690457 ACGGGCCCT-CTTGACTCACTCTTGTTAGGATAGACCCCCTACAGCCTGATTTTATAATCAAAG
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       51689 63 +    111706 ACAGGCCCT-CTTGACTCACTCTTGTTAGGATAGACCCCCTACAGCCTGATTTTACAATCAAAG
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 82801 61 - 187378091 ACAGGCCCT-CTTGACTCACTCTTGTTAGGATAGA-CCCCTACAG-CTGATTTTACAATCAAAG
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               441319 63 -  91754291 ACAGGCCCT-CTTGACTCACTCTTGTTAGGATAGACCCCCTACAGCCTGATTTTACAATCAAAG
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               952894 64 -  74750902 ACAGGCCCTACTGGACTCCCTCCTGTTAGGATCAATACCCTGCAGCCTGATTTCACAATCAAAT
i calJac3.chr17            C 0 C 0
e mm10.chr16                65447266 20 -  98207768 I
e canFam3.chr33             29082262  5 +  31377067 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=54361.000000
s hg38.chr3_KI270935v1_alt    141169 40 +    197351 GCTGAATTGTCAGCCCCCATCCCCCGTCACCTGCAGGTCT
s nomLeu3.chr11            120895974 39 + 123690457 GCTGAATTGTCAGCCCCCAT-CCCTATCACCTGCAGGTCT
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       51752 39 +    111706 GCTGAATTGTCAGCTCCCAT-CCCCATCACCTGCAGGTCT
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 82862 39 - 187378091 GCTGAATTGTCAGCTCCCAT-CCCCATCACCTGCAGGTCT
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               441382 39 -  91754291 GCTGAATTGTCAGCTCCCAT-CCCCATCACCTGCAGGTCT
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               952958 38 -  74750902 GCTGCACTGTTAGCCCCGA--CCCCGACACCTGCAGGTCT
i calJac3.chr17            C 0 C 0
s mm10.chr16                65447286 37 -  98207768 GCTGGAC--TCAACCTCTGT-CCCTGTCACCTGCAAGTCC
i mm10.chr16               I 20 C 0
e canFam3.chr33             29082262  5 +  31377067 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=753.000000
s hg38.chr3_KI270935v1_alt    141209 2 +    197351 TC
s nomLeu3.chr11            120896013 2 + 123690457 TC
i nomLeu3.chr11            C 0 I 9967
s chlSab2.chr15               441421 2 -  91754291 TC
i chlSab2.chr15            C 0 C 0
s mm10.chr16                65447323 2 -  98207768 TT
i mm10.chr16               C 0 C 0
e rheMac3.chrUn_JH291127       51791 0 +    111706 C
e canFam3.chr33             29082262 5 +  31377067 I
e calJac3.chr17               952996 0 -  74750902 C
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 82901 0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=-829.000000
s hg38.chr3_KI270935v1_alt    141211 1 +    197351 -T
s chlSab2.chr15               441423 1 -  91754291 -T
i chlSab2.chr15            C 0 C 0
s mm10.chr16                65447325 1 -  98207768 A-
i mm10.chr16               C 0 C 0
e rheMac3.chrUn_JH291127       51791 0 +    111706 C
e canFam3.chr33             29082262 5 +  31377067 I
e calJac3.chr17               952996 0 -  74750902 C
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 82901 0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120896015 9967 + 123690457 I

a score=360.000000
s hg38.chr3_KI270935v1_alt    141212 5 +    197351 CGTGG
s chlSab2.chr15               441424 5 -  91754291 CATGG
i chlSab2.chr15            C 0 C 0
e rheMac3.chrUn_JH291127       51791 0 +    111706 C
e mm10.chr16                65447326 0 -  98207768 C
e canFam3.chr33             29082262 5 +  31377067 I
e calJac3.chr17               952996 0 -  74750902 C
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 82901 0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120896015 9967 + 123690457 I

a score=21499.000000
s hg38.chr3_KI270935v1_alt    141217 84 +    197351 CCGGGTTGGGGTATTCCTGGTCAGTCTCGCGGCCGGGTTGGGGTATTCCTGGTCAGTCTCGCGGCCGGGTTGGGGTATTCCTGG
s nomLeu3.chr11            120905982 84 + 123690457 TTGGGTTGGGGTATTCCTGGTCAGTCTCGTGGCTGGGTTGGGGTATTCCTGGTCAGTCTCGTGGCTGGGCTGGGGTATTCCTGG
i nomLeu3.chr11            I 9967 C 0
s chlSab2.chr15               441429 84 -  91754291 TTGGGTTGGGGTATTCCTGGTCAGTCTCATGGTTGGGTTGGGGTATTCCTGGTCAGTCTCATGGTTGGGTTGGGGTATTCCTGG
i chlSab2.chr15            C 0 T 4446
e rheMac3.chrUn_JH291127       51791  0 +    111706 C
e mm10.chr16                65447326  0 -  98207768 C
e canFam3.chr33             29082262  5 +  31377067 I
e calJac3.chr17               952996  0 -  74750902 C
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 82901  0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=1102.000000
s hg38.chr3_KI270935v1_alt    141301 14 +    197351 TCAGTCTCGCGGCC
s nomLeu3.chr11            120906066 14 + 123690457 TCAGTCTCGTGGCT
i nomLeu3.chr11            C 0 C 0
e rheMac3.chrUn_JH291127       51791  0 +    111706 C
e mm10.chr16                65447326  0 -  98207768 C
e canFam3.chr33             29082262  5 +  31377067 I
e calJac3.chr17               952996  0 -  74750902 C
e chlSab2.chr15               441513 4446 -  91754291 T
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 82901  0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=30515.000000
s hg38.chr3_KI270935v1_alt    141315 116 +    197351 GGGTTGGGGTATTCCTGGTCAGTCTCGTGGCCGGGTTGGGGTATTCCTGGTCAGTCTCGTGGTTGGGTTGGGGTATTCCTGGTCAGTCTCGTCGTTGGGTTGGGGTATTCCTGGTC
s nomLeu3.chr11            120906080 116 + 123690457 GGGCTGGGGTATTCCTGGTCAGTCTCGTGGCTGGGCTGGGGTATTCCTGGTCAGTCTCGTGGCTGGGTTGGGGTATTCCTGGTCAGTCTCGTGGCTGGGTTGGGGTGTTCCTGGTC
i nomLeu3.chr11            C 0 C 0
s chlSab2.chr15               437067 116 -  91754291 GGGTTGGGGTATTCCTGGTCAGTCTCATGGTTGGGTTGGGGTATTCCTGGTCAGTCTCATGGTTGGGTTGGGGTATTCCTGGTCAGTCTCATGGTTGGGTTGGGGTATTCCTGGTC
i chlSab2.chr15            T 4446 T 32
e rheMac3.chrUn_JH291127       51791   0 +    111706 C
e mm10.chr16                65447326   0 -  98207768 C
e canFam3.chr33             29082262   5 +  31377067 I
e calJac3.chr17               952996   0 -  74750902 C
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 82901   0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=8237.000000
s hg38.chr3_KI270935v1_alt    141431 32 +    197351 AGTCTCGCGGCCGGGTTGGGGTATTCCTGGTC
s nomLeu3.chr11            120906196 32 + 123690457 AGTCTCGTGGCTGGGTTGGGGTATTCCTGGTC
i nomLeu3.chr11            C 0 C 0
s chlSab2.chr15               437151 32 -  91754291 AGTCTCATGGTTGGGTTGGGGTATTCCTGGTC
i chlSab2.chr15            T 32 T 32
e rheMac3.chrUn_JH291127       51791  0 +    111706 C
e mm10.chr16                65447326  0 -  98207768 C
e canFam3.chr33             29082262  5 +  31377067 I
e calJac3.chr17               952996  0 -  74750902 C
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 82901  0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=6844.000000
s hg38.chr3_KI270935v1_alt    141463 32 +    197351 AGTCTCGCGGCCGGGTTGGGGTATTCCTG-GTC
s nomLeu3.chr11            120906228 33 + 123690457 AGTTTCGTGGTTGGGTTGGGATATTCCTGAGTC
i nomLeu3.chr11            C 0 C 0
s chlSab2.chr15               437151 32 -  91754291 AGTCTCATGGTTGGGTTGGGGTATTCCTG-GTC
i chlSab2.chr15            T 32 T 116
e rheMac3.chrUn_JH291127       51791  0 +    111706 C
e mm10.chr16                65447326  0 -  98207768 C
e canFam3.chr33             29082262  5 +  31377067 I
e calJac3.chr17               952996  0 -  74750902 C
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 82901  0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=220.000000
s hg38.chr3_KI270935v1_alt    141495 5 +    197351 AGTCT
s nomLeu3.chr11            120906261 5 + 123690457 AGCTT
i nomLeu3.chr11            C 0 T 10245
e rheMac3.chrUn_JH291127       51791 0 +    111706 C
e mm10.chr16                65447326 0 -  98207768 C
e canFam3.chr33             29082262 5 +  31377067 I
e calJac3.chr17               952996 0 -  74750902 C
e chlSab2.chr15               437183 116 -  91754291 T
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 82901 0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=0.000000
s hg38.chr3_KI270935v1_alt    141500 7 +    197351 CGCGGCC
e rheMac3.chrUn_JH291127       51791 0 +    111706 C
e mm10.chr16                65447326 0 -  98207768 C
e canFam3.chr33             29082262 5 +  31377067 I
e calJac3.chr17               952996 0 -  74750902 C
e chlSab2.chr15               437183 116 -  91754291 T
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 82901 0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120906266 10245 + 123690457 T

a score=2577.000000
s hg38.chr3_KI270935v1_alt    141507 32 +    197351 GGGTTGGGGTATTCCTGGTCAGTCTCGCGGCC
s chlSab2.chr15               437067 32 -  91754291 GGGTTGGGGTATTCCTGGTCAGTCTCATGGTT
i chlSab2.chr15            T 116 T 32
e rheMac3.chrUn_JH291127       51791  0 +    111706 C
e mm10.chr16                65447326  0 -  98207768 C
e canFam3.chr33             29082262  5 +  31377067 I
e calJac3.chr17               952996  0 -  74750902 C
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 82901  0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120906266 10245 + 123690457 T

a score=2577.000000
s hg38.chr3_KI270935v1_alt    141539 32 +    197351 GGGTTGGGGTATTCCTGGTCAGTCTCGCGGCC
s chlSab2.chr15               437067 32 -  91754291 GGGTTGGGGTATTCCTGGTCAGTCTCATGGTT
i chlSab2.chr15            T 32 T 32
e rheMac3.chrUn_JH291127       51791  0 +    111706 C
e mm10.chr16                65447326  0 -  98207768 C
e canFam3.chr33             29082262  5 +  31377067 I
e calJac3.chr17               952996  0 -  74750902 C
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 82901  0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120906266 10245 + 123690457 T

a score=7708.000000
s hg38.chr3_KI270935v1_alt    141571 88 +    197351 GGGTTGGGGTATTCCTGGTCAGTCTCGTGGCCGGGTTGGGGTATTCCTGGTCAGTCTCGTGGCCGGGTTGGGGTATTCCTGGTCAGTC
s chlSab2.chr15               437067 88 -  91754291 GGGTTGGGGTATTCCTGGTCAGTCTCATGGTTGGGTTGGGGTATTCCTGGTCAGTCTCATGGTTGGGTTGGGGTATTCCTGGTCAGTC
i chlSab2.chr15            T 32 C 0
e rheMac3.chrUn_JH291127       51791  0 +    111706 C
e mm10.chr16                65447326  0 -  98207768 C
e canFam3.chr33             29082262  5 +  31377067 I
e calJac3.chr17               952996  0 -  74750902 C
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 82901  0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120906266 10245 + 123690457 T

a score=1542.000000
s hg38.chr3_KI270935v1_alt    141659 8 +    197351 TCGTGGCC
s nomLeu3.chr11            120896021 8 + 123690457 TCGTGGTT
i nomLeu3.chr11            T 10245 C 0
s chlSab2.chr15               437155 8 -  91754291 TCATGGTT
i chlSab2.chr15            C 0 T 96
e rheMac3.chrUn_JH291127       51791 0 +    111706 C
e mm10.chr16                65447326 0 -  98207768 C
e canFam3.chr33             29082262 5 +  31377067 I
e calJac3.chr17               952996 0 -  74750902 C
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 82901 0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=8237.000000
s hg38.chr3_KI270935v1_alt    141667 32 +    197351 GGGTTGGGGTATTCCTGGTCAGTCTCGCGGCC
s nomLeu3.chr11            120896029 32 + 123690457 GGGTTGGGGTATTCCTGGTCAGTCTCGTGGCT
i nomLeu3.chr11            C 0 C 0
s chlSab2.chr15               437067 32 -  91754291 GGGTTGGGGTATTCCTGGTCAGTCTCATGGTT
i chlSab2.chr15            T 96 T 32
e rheMac3.chrUn_JH291127       51791  0 +    111706 C
e mm10.chr16                65447326  0 -  98207768 C
e canFam3.chr33             29082262  5 +  31377067 I
e calJac3.chr17               952996  0 -  74750902 C
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 82901  0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=7993.000000
s hg38.chr3_KI270935v1_alt    141699 32 +    197351 GGGTTGGGGTATTCCTGGTCAGTCTCGCGGCC
s nomLeu3.chr11            120896061 32 + 123690457 GGGCTGGGGTATTCCTGGTCAGTCTCGTGGCT
i nomLeu3.chr11            C 0 C 0
s chlSab2.chr15               437067 32 -  91754291 GGGTTGGGGTATTCCTGGTCAGTCTCATGGTT
i chlSab2.chr15            T 32 T 32
e rheMac3.chrUn_JH291127       51791  0 +    111706 C
e mm10.chr16                65447326  0 -  98207768 C
e canFam3.chr33             29082262  5 +  31377067 I
e calJac3.chr17               952996  0 -  74750902 C
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 82901  0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=30965.000000
s hg38.chr3_KI270935v1_alt    141731 116 +    197351 GGGTTGGGGTATTCCTGGTCAGTCTCGTGGTTGGGTTGGGGTATTCCTGGTCAGTCTCGTGGCTGGGTTGGGGTATTCCTGGTCAGTCTCGTGGTTGGGTTGGGGTATTCCTGGTC
s nomLeu3.chr11            120896093 116 + 123690457 GGGCTGGGGTATTCCTGGTCAGTCTCGTGGCTGGGCTGGGGTATTCCTGGTCAGTCTCGTGGCTGGGCTGGGGTATTCCTGGTCAGTCTCGTGGCTGGGCTGGGGTATTCCTGGTC
i nomLeu3.chr11            C 0 C 0
s chlSab2.chr15               437067 116 -  91754291 GGGTTGGGGTATTCCTGGTCAGTCTCATGGTTGGGTTGGGGTATTCCTGGTCAGTCTCATGGTTGGGTTGGGGTATTCCTGGTCAGTCTCATGGTTGGGTTGGGGTATTCCTGGTC
i chlSab2.chr15            T 32 T 96
e rheMac3.chrUn_JH291127       51791   0 +    111706 C
e mm10.chr16                65447326   0 -  98207768 C
e canFam3.chr33             29082262   5 +  31377067 I
e calJac3.chr17               952996   0 -  74750902 C
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 82901   0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=8566.000000
s hg38.chr3_KI270935v1_alt    141847 34 +    197351 AGTCTCGCGGCCGGGTTGGGGTATTCCTGGTCAG
s nomLeu3.chr11            120896209 34 + 123690457 AGTCTCGTGGCTGGGCTGGGGTATTCCTGGTCAG
i nomLeu3.chr11            C 0 C 0
s chlSab2.chr15               437087 34 -  91754291 AGTCTCATGGTTGGGTTGGGGTATTCCTGGTCAG
i chlSab2.chr15            T 96 T 64
e rheMac3.chrUn_JH291127       51791  0 +    111706 C
e mm10.chr16                65447326  0 -  98207768 C
e canFam3.chr33             29082262  5 +  31377067 I
e calJac3.chr17               952996  0 -  74750902 C
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 82901  0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=8472.000000
s hg38.chr3_KI270935v1_alt    141881 32 +    197351 TCTCGTGGTTGGGTTGGGGTATTCCTGGTCAG
s nomLeu3.chr11            120896243 32 + 123690457 TCTCGTGGCTGGGCTGGGGTATTCCTGGTCAG
i nomLeu3.chr11            C 0 C 0
s chlSab2.chr15               437057 32 -  91754291 TCTCATGGTTGGGTTGGGGTATTCCTGGTCAG
i chlSab2.chr15            T 64 T 32
e rheMac3.chrUn_JH291127       51791  0 +    111706 C
e mm10.chr16                65447326  0 -  98207768 C
e canFam3.chr33             29082262  5 +  31377067 I
e calJac3.chr17               952996  0 -  74750902 C
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 82901  0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=10352.000000
s hg38.chr3_KI270935v1_alt    141913 42 +    197351 TCTCGTGGTTGGGTTGGGGTATTCCTGGTCAGTCTCGCGGCC
s nomLeu3.chr11            120896275 42 + 123690457 TCTCGTGGCTGGGCTGGGGTATTCCTGGTCAGTCTCGTGGCT
i nomLeu3.chr11            C 0 C 0
s chlSab2.chr15               437057 42 -  91754291 TCTCATGGTTGGGTTGGGGTATTCCTGGTCAGTCTCATGGTT
i chlSab2.chr15            T 32 T 42
e rheMac3.chrUn_JH291127       51791  0 +    111706 C
e mm10.chr16                65447326  0 -  98207768 C
e canFam3.chr33             29082262  5 +  31377067 I
e calJac3.chr17               952996  0 -  74750902 C
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 82901  0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=2119.000000
s hg38.chr3_KI270935v1_alt    141955 22 +    197351 GGGTTGGGGTATTCCTGGTCAG
s nomLeu3.chr11            120896317 22 + 123690457 GGGTTGGGGTATTCCTGGTCAG
i nomLeu3.chr11            C 0 C 0
e rheMac3.chrUn_JH291127       51791  0 +    111706 C
e mm10.chr16                65447326  0 -  98207768 C
e canFam3.chr33             29082262  5 +  31377067 I
e calJac3.chr17               952996  0 -  74750902 C
e chlSab2.chr15               437099 42 -  91754291 T
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 82901  0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=32419.000000
s hg38.chr3_KI270935v1_alt    141977 126 +    197351 TCTCGTGGTTGGGTTGGGGTATTCCTGGTCAGTCTCGTGGTTGGGTTGGGGTATTCCTGGTCAGTCTCGTGGTTGGGTTGGGGTATTCCTGGTCAGTCTCGTGGTTGGGTTGGGGTATTCCTG-GTC
s nomLeu3.chr11            120896339 127 + 123690457 TCTCGTGGCTGGGCTGGGGTATTCCTGGCCAGTCTCGTGGCTGGGCTGGGGTATTCCTGGTCAGTCTCGTGGCTGGGTTGGGGTATTCCTGGTCAGTTTCGTGGTTGGGTTGGGATATTCCTGAGTC
i nomLeu3.chr11            C 0 C 0
s chlSab2.chr15               437057 126 -  91754291 TCTCATGGTTGGGTTGGGGTATTCCTGGTCAGTCTCATGGTTGGGTTGGGGTATTCCTGGTCAGTCTCATGGTTGGGTTGGGGTATTCCTGGTCAGTCTCATGGTTGGGTTGGGGTATTCCTG-GTC
i chlSab2.chr15            T 42 T 32
e rheMac3.chrUn_JH291127       51791   0 +    111706 C
e mm10.chr16                65447326   0 -  98207768 C
e canFam3.chr33             29082262   5 +  31377067 I
e calJac3.chr17               952996   0 -  74750902 C
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 82901   0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=640.000000
s hg38.chr3_KI270935v1_alt    142103 4 +    197351 AGTC
s nomLeu3.chr11            120896466 4 + 123690457 AGCT
i nomLeu3.chr11            C 0 I 9506
s chlSab2.chr15               437151 4 -  91754291 AGTC
i chlSab2.chr15            T 32 C 0
e rheMac3.chrUn_JH291127       51791 0 +    111706 C
e mm10.chr16                65447326 0 -  98207768 C
e canFam3.chr33             29082262 5 +  31377067 I
e calJac3.chr17               952996 0 -  74750902 C
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 82901 0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=7814.000000
s hg38.chr3_KI270935v1_alt    142107 28 +    197351 TCGTGGTTGGGTTGGGGTATTCCTGGTC
s nomLeu3.chr11            120905976 28 + 123690457 TCGTGGTTGGGTTGGGGTATTCCTGGTC
i nomLeu3.chr11            I 9506 C 0
s chlSab2.chr15               437155 28 -  91754291 TCATGGTTGGGTTGGGGTATTCCTGGTC
i chlSab2.chr15            C 0 T 116
e rheMac3.chrUn_JH291127       51791  0 +    111706 C
e mm10.chr16                65447326  0 -  98207768 C
e canFam3.chr33             29082262  5 +  31377067 I
e calJac3.chr17               952996  0 -  74750902 C
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 82901  0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=911.000000
s hg38.chr3_KI270935v1_alt    142135 12 +    197351 AGTCTCGCGGCC
s nomLeu3.chr11            120906004 12 + 123690457 AGTCTCGTGGCT
i nomLeu3.chr11            C 0 C 0
e rheMac3.chrUn_JH291127       51791  0 +    111706 C
e mm10.chr16                65447326  0 -  98207768 C
e canFam3.chr33             29082262  5 +  31377067 I
e calJac3.chr17               952996  0 -  74750902 C
e chlSab2.chr15               437183 116 -  91754291 T
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 82901  0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=31200.000000
s hg38.chr3_KI270935v1_alt    142147 116 +    197351 GGGTTGGGGTATTCCTGGTCAGTCTCGTGGTTGGGTTGGGGTATTCCTGGTCAGTCTCGTGGTTGGGTTGGGGTATTCCTGGTCAGTCTCGTGGTTGGGTTGGGGTATTCCTGGTC
s nomLeu3.chr11            120906016 116 + 123690457 GGGTTGGGGTATTCCTGGTCAGTCTCGTGGCTGGGCTGGGGTATTCCTGGTCAGTCTCGTGGCTGGGCTGGGGTATTCCTGGTCAGTCTCGTGGCTGGGCTGGGGTATTCCTGGTC
i nomLeu3.chr11            C 0 C 0
s chlSab2.chr15               437067 116 -  91754291 GGGTTGGGGTATTCCTGGTCAGTCTCATGGTTGGGTTGGGGTATTCCTGGTCAGTCTCATGGTTGGGTTGGGGTATTCCTGGTCAGTCTCATGGTTGGGTTGGGGTATTCCTGGTC
i chlSab2.chr15            T 116 T 96
e rheMac3.chrUn_JH291127       51791   0 +    111706 C
e mm10.chr16                65447326   0 -  98207768 C
e canFam3.chr33             29082262   5 +  31377067 I
e calJac3.chr17               952996   0 -  74750902 C
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 82901   0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=24252.000000
s hg38.chr3_KI270935v1_alt    142263 92 +    197351 AGTCTCGCGGCCGGGTTGGGGTATTCCTGGTCAGTCTCGTGGTTGGGTTGGGGTATTCCTGGTCAGTCTCGTGGTTGGGTTGGGGTATTCCT
s nomLeu3.chr11            120906132 92 + 123690457 AGTCTCGTGGCTGGGTTGGGGTATTCCTGGTCAGTCTCGTGGCTGGGTTGGGGTGTTCCTGGTCAGTCTCGTGGCTGGGTTGGGGTATTCCT
i nomLeu3.chr11            C 0 C 0
s chlSab2.chr15               437087 92 -  91754291 AGTCTCATGGTTGGGTTGGGGTATTCCTGGTCAGTCTCATGGTTGGGTTGGGGTATTCCTGGTCAGTCTCATGGTTGGGTTGGGGTATTCCT
i chlSab2.chr15            T 96 C 0
e rheMac3.chrUn_JH291127       51791  0 +    111706 C
e mm10.chr16                65447326  0 -  98207768 C
e canFam3.chr33             29082262  5 +  31377067 I
e calJac3.chr17               952996  0 -  74750902 C
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 82901  0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=2346.000000
s hg38.chr3_KI270935v1_alt    142355 4 +    197351 GGTC
s nomLeu3.chr11            120906224 4 + 123690457 GGTC
i nomLeu3.chr11            C 0 C 0
s chlSab2.chr15               437179 4 -  91754291 GGTC
i chlSab2.chr15            C 0 T 32
s canFam3.chr33             29082267 4 +  31377067 GGTC
i canFam3.chr33            I 5 C 0
e rheMac3.chrUn_JH291127       51791 0 +    111706 C
e mm10.chr16                65447326 0 -  98207768 C
e calJac3.chr17               952996 0 -  74750902 C
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 82901 0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=-444.000000
s hg38.chr3_KI270935v1_alt    142359 2 +    197351 AG
s nomLeu3.chr11            120906228 2 + 123690457 AG
i nomLeu3.chr11            C 0 C 0
s chlSab2.chr15               437151 2 -  91754291 AG
i chlSab2.chr15            T 32 C 0
s canFam3.chr33             29082271 1 +  31377067 A-
i canFam3.chr33            C 0 C 0
e rheMac3.chrUn_JH291127       51791 0 +    111706 C
e mm10.chr16                65447326 0 -  98207768 C
e calJac3.chr17               952996 0 -  74750902 C
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 82901 0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=4404.000000
s hg38.chr3_KI270935v1_alt    142361 3 +    197351 TCT
s nomLeu3.chr11            120906230 3 + 123690457 TTT
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       51791 3 +    111706 TCT
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 82901 3 - 187378091 TCT
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               437153 3 -  91754291 TCT
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               952996 3 -  74750902 TCT
i calJac3.chr17            C 0 C 0
s canFam3.chr33             29082272 3 +  31377067 CCT
i canFam3.chr33            C 0 C 0
e mm10.chr16                65447326 0 -  98207768 C
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=47518.000000
s hg38.chr3_KI270935v1_alt    142364 24 +    197351 CGTGGTTGGGTTGGGGTACTCCTG
s nomLeu3.chr11            120906233 24 + 123690457 CGTGGTTGGGTTGGGATATTCCTG
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       51794 24 +    111706 CATGGTTGGGTTGGGGTATTCCTG
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 82904 24 - 187378091 CATGGTTGGGTTGGGGTATTCCTG
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               437156 24 -  91754291 CATGGTTGGGTTGGGGTATTCCTG
i chlSab2.chr15            C 0 I 4
s calJac3.chr17               952999 24 -  74750902 CATGATTGGGTTGGGGTATTCCTG
i calJac3.chr17            C 0 C 0
s mm10.chr16                65447326 24 -  98207768 CATGGTTGGAGTAGGGTGTTCCAG
i mm10.chr16               C 0 C 0
s canFam3.chr33             29082275 24 +  31377067 CATGGCTGTGAGGGGGGATTCCCG
i canFam3.chr33            C 0 C 0
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=1016361.000000
s hg38.chr3_KI270935v1_alt    142388 675 +    197351 AGTCAGCTTAATGTCCCTTGACTGCTTCCT-CCCACACCCATATTTAAGCCTCAGTCCCCTGCTGCAGGG-------GCTGTCACA-----------GCAGCAACTCTGGCAAAGCCTTCCACACAGCTCTTTGTCTCCCCTGCCAGCTGCTGGGGGATCCTGACTGCC-AGGCTTTGAAAGGCTCACCTGATAAAATGTGGTCCCCCGACCAGTGGAGAAGTCAGCATCGTCCCAGAACGGAGCCACCAGGGCCACAGGGTCCCGGCCTGTGAAGCCTGTTGGGAGTGGGTTGGGGTAGGAGAAAATCTGGTAGTCTGACTCTGGGAAGATGATCTGGCCATTGTCTGTGAACTGAGCACATGGGTTTTGTGGTCAGCATTCAGGGAGGGAAG-------------TGGGGAGGAAA-GTCCCAGCCTTGGTCCAGCTCCTCAAAAGCGTGACCCCCAA----------GGGTAGAGCTTTAGAGATGCTAACAACCCCTG-GAAGTCACCTCCTGTGTCCTGT----TTTGGGGAGAGCCCTTTCCATA-TAATCTCACAGA-ATGCTCCGCCC--TCAGGCCATCCCT----------TGCGTCCTCGGGTGGTAGGCTTGGTCCTGTTTCACTGCAGATCCCTGGCTGTGGACCAG-CCCCTCAC-AGGCACACCCCTCTTGGCCA---GTCCCCTGGGCCCCATCCTGAAGTTTGCGACACATTAGGTGGGGCTCAGG
s nomLeu3.chr11            120906257 654 + 123690457 AGTCAGCTTAATGTCCCTTGCCTGGTTCCT-CCCACACCCATATTCAAGCCTCAGTCCACTGCTGCAGGG-------GCTGTCACA-----------GCAGCAACTCTGGCAATGCCTTCCACACAGCTCTTTGTCTCCCCTGCCAGCTACTGGGGGATCCTGACTGCC-AGGCTTTGAAAGGGTCACCTGATAAAATGTGGTCCCCCGACCAGTGGAGAAGTCAGCATCGTCCCAGAACGGAGCCACCAGGGCCACAGGGTCCCAGCCTGTGAAGCCTGTTCGCAGTGGGTTGGGGTAGGAGAAAATCTGGTAGTCTGACTCTGGGAAGATGATCTGGCCATTGTCTGTGAACTGAGCACACGGGTTTTGTGGTCAGCATTCAGGGAGGGAAG-------------TGGGGAGGAAA-GTCCCAGCCTTGGTCCAGCTCCTCAGAAGCGTG-------A----------GGGTAGAGCTTTAGAGATGCT---AACCCCTG-GAAGTCACCTCCTGTGTCCTGG----CTTGGGGAGAGCCCTTTCCATA-TAATCTCACAGA-GTGCTCC-CCC--TCAGGCCATCCCT----------TGCG---TCGGGTGGTAGGCTTGGTCCTGTTTCACTGCAGATCCCTGGCTGTGGACCAG-CCCCTCAC-AGGCACACCCCTCTTGGCCA---GTGCCCTGGGCCCCATCCTGAAGTTTGTGACACATTAGGTGGG-------
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       51818 675 +    111706 AGTCAGCTTAATATCCCTTGCCAGCTTCCT-CCCACACCCATATTTAAGCCTCAGTCCCCTGCTGCAGGG-------GCTGTCACA-----------GCAGCGACTCTGGCAATGCCTTCCACACAGCTCTTTTTCTCCTCTGCCAGCTGCTGCGGGATCCTGACCGCC-AGGCTTTGAAAGGCTCACCTGATAAAATATGGTCCCCTGACCAGTGGAGAAGTCAGCATCGTCCCAGAACGGAGCCACCAGGGCCACAGGGTCCCAGCCTGTGAAGCCTGTTGGGAGTGGGTTGGGATAGGAGAAAATCTGGTAGTCTGACTCTGGGAAGATGATCTGGCCATTGTCTGTGAACTAAGCACACAGGTTTTGTGGTTACCATTCAGGGAGGAAGG-------------TGGGGAGGAAA-GTCCCAGCCTTGGTCCAGCTCCACAGAAGCGTGACCCCCAA----------GGGTAGAGCTTTAGAGGTGCTAACAACCCCGG-GAAGTCACCTCCTGTGTCCTGG----CTTTGGGAGAGCCCTTTCCGTA-TAATCTCACAGA-ATACTCCACCC--TTAAGGCATCCCT----------TGGGTCCTTGGGTGGTCGGCTTGGTCCTGTTTCACTGCAGATCCCCGGCTGTGGACCAG-CCAATCAC-AGACACATCCCTCTTGGCCA---GTCCCCTGGGCCCCATCCTGAAGCTTGTGACACATCATGTGGGGCTCAGG
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 82928 666 - 187378091 AGTCAGCTTAATATCCCTTGCCAGCTTCCT-CCCACACCCATACTTAAGCCTCAGTCCCCTGCTGCAGAC-------GCTGTCACA-----------GCAGCGACTCTGGCAATGCCTTCCACACAGCTCTGTTTCTCC--------CTGCTGC-GGATCCTGACTGCC-AGGCTTTGAAAGGCTCACCTGATAAAATATGGTCCCCTGACCAGTGGAGAAGTCAGCATCGTCCCAGAATGGAGCCACCAGGGCCACAGGGTCCCAGCCTGTGAAGCCTGTTGGGAGTGGGTTGGGATAGGAGAAAATCTGGGAGTCTGACTCTGGGAAGATGATCTGGCCATTGTCTGTGAACTAAGCACACAGGTTTTGTGGTTACCATTcagggaggaagg-------------tggggaggaAA-GTCCCAGCCTTGGTCCAGCTCCACAGAAGCGTGACCCCCAA----------GGGTAGAGCTTTAGAGGTGCTAACAACCCCGG-GAAGTCACCTCCTGTGTCCTGG----CTTCAGGAGAGCCCTTTCCATA-TAATCTCACAGA-ATACTCCACCC--TTAAGGCATCCCT----------TGGGTCCTTGGGTGGTCGGCTTGGTCCTGTTTCACTGCAGATCCCCGGCTGTGGACCAG-CCAATCAC-AGACACATCCCTCTTggcca---gtcccctgggccccaTCCTGAAGCTTGTGACGCATCATGTGGGGCTCAGG
i papAnu2.chr2             C 0 I 7
s chlSab2.chr15               437184 668 -  91754291 AGTCAGCTTAATATCCCTTGACAGCTTCCT-CCCATACCCATATTTAAGCCTCAGTCCCCTGCTGCAGGG-------GCTGTCACA-----------GCAGCGACTCTGGCAATGCCTTCCACACAGCTCTTTTTCTCCC-------CTGCTGCGGGATCCTGACTGCC-AGGCTTTGAAAGGCTCACCTGATAAAATATGGTCCCCTGACCAGTGGAGAAGTCAGCATCGTCCCAGAACGGAGCCACCAGGGCCACAGGGTCCCAGCCTGTGAAGCCTCTTGGGAGTGGGTTGGGATAGGAGAAAATCTGGTAGTCTGACTGTGGGAAGATGATCTGGCCATTGTCTGTGAACTAAGCATACAGGTTTTGTGGTTACCATTCAAGGAGGAAGG-------------TGGGGAGGAAA-GTCCCAGCCTTGGTCCAGCTCCACAGAAGCGTGATCCCCAA----------GGGTAGAGCTTTAGAGGTGCTAACAACCCCGG-GAAGTCACCTCCTGTGTCCTGG----CTTCGGGAGAGCCCTTTCCATA-TAATCTCACAGA-ATACTCCACCC--TTAAGGCATCCCT----------TGGGTCCTTGGGTGGTCGGCTTGGTCCTGTTTCACTGCAGATCCCCGGCTGTGGACCAG-CCAATCAC-AGACACATCCCTCTTGGCCA---GTCCCCTGGGCCCCATCCTGAAGCTTGTGACACATCATGTGGGGCTCAGG
i chlSab2.chr15            I 4 C 0
s calJac3.chr17               953023 645 -  74750902 AGTCAGCTTGATATCCCTTGCCTGCTTCCT-TCCACAGCCATATTTAAGCCTC---------CTG------------GCTGTGGCA-----------GCAGTAACTCTGACAAAGCCTTCCACACAGCTCTTTGCCTCCCCTGCCAGCTGCTGGGGGATCCTGACTGCC-AGGCTTTGAGAGGCTCACCCGGTAAAATACGGTCCCTCGACCGTCGGAGAAATCAGCATCATCCCAGAACGGAGCCACCAGGGCCACAGTCTCCCAGCCTGTGAAGCCTGTTGGGAGCGGGTTTGGGTAGGAGAAAATCTGGTAGTCTGACTCTGGGAAGATGATCTGGCCGTTGTCTGTGAACTGAGCACAAGGGTTTTGT-GTGAGCATTCAGGGAGGGAGG-------------TGGGGAGGAAACGCCCCAGCCTTGGCCCAGCTCCTCAGAAGC-CGACCCCCAGGGGCCTCTCTGGGTGGAGCTTTAGAGA--CTAACAACCCCTG-GAAGTCATCTCCTATGTCCTGA----TTTCAGGAGAGACCTTTCCGTA-T---------------------------GGGCCATCCCT----------TGGGTCCTCAGGTGGTAGGCTTGGTCCTGCTTCAGTACAGACCCCTGGCTGTGGACCAGCCCCCTCAC-AGGCACACCTCTCTTGGCCA---GTCCTCTGGGCCCCATCCTGAAGCTTGTGACACATCAGATGAGGCTCAGG
i calJac3.chr17            C 0 C 0
s mm10.chr16                65447350 671 -  98207768 AGTCTATTTAGCATTCTTCCTCAGCTCCCT-CTGCACCCTGTATTTAAACTTCAGTCCCTTTCCATGAAA----------ATCACATTCCATGGGATACAATGACCTTGAT-GTGCTCTTGACATGACCTTGATCCCTCCAGGCAGGATGCTGGGAGTTACTGACTGCCAAGGACTTGAATGACTCACCTGGTAAAATATGGCTCCCCTGGAGCTAGAGAAATCAGCATCAGCCCAGAACGGGGCCACCATGGCCACGCGCTCCCTTCCGGTGAAGCCTCTTTGAGGTGGGTTGGGGTAGGAGAAGACGTCATAGTCTGACTCTGGGAAAATGATCTGACCATTATCTGTAACCTGAGCACAAGGGTTCT-TGGTT-------AGGGAGGGATG-------------AGGGAAGGGTT-ATCCTAGTCTAGGACCAGTTCCTCGGAAGAGCTCCCCTTAAAAGCCCATCTGTGCAGAGGGTTTGAGGTATCAA----CCTTG-ACGGCCCCCTTGTGCACTTTTTAGCCTTCCAGGAGAACTCAAAACTTAGCAACCTCACA-A-ATACTCATCCCTATCAGGACATTCCC-------ACATCAGTCC-AAAATAGTGGGCGGTGTTCGGC----CTGCA---TCCAGGCT-TGCCTCAG-----------AGCAAAGCCTTCTTGGTAAAGTGTTTC----ACCCTTTCTTGAAGCTTGTGACATATCAGATGAGGGTAAAG
i mm10.chr16               C 0 C 0
s canFam3.chr33             29082299 714 +  31377067 AGTGTATGTAACAGCCCTGCTCTGTTTCCTCCCCACCCTCATATTTAAACATCACTCTCTGCCCACAGGGAGCCCAGGCTCTGACA-----------GCAGTCACGCTTGC----CCACGTTCACACCTTTGTCTCTCCT-TGCTGGCTGCTGGGAGATCCTGAATGCT-GGACTTTGAAAGGCTCACCTGGTAAAATATGGTCCCCTGGCCACTGGAAAAATCAGCATCGTCCCAGAATGGAGCCACCATGGCCACAGGGTCCCTGCCTGTGAAGCCTCTAAGGGGAGGATTGGGGTAGGAGAAAATCTGGTACTCTGACTCCGGGAAAATGATCTGGCCATTATCTGTGAACTGGGAACACAGAAGTTCTGGTTAGTGTCCagggagggagggagcgggggaggcagggagagaAC-GTCCCAGGCGTGGGCCGGTTCCTCAGAAGTGTGATCCCCAAGGACCTCTCTGGGTGGAACTTTAGGGATGTCAACAACCACTGCCAGGTCGTCCCATTCGTCCCCG----CCTGCTGGGCCACCTTGCTTAG-TCCTCACACAGATGCTCTTCACCT--GCAGGACACTCCTCTGTTTTAAGTCCTTCCTGACAAGGTAGGTTTTGCCCTGCCTCGGCGGCCAACCCCATCCATAGCCGGC-CCCAGCGCGGGGCGGAGCCCTCTGGGTGG---ATCCCCACGGAGCCTTCCTGAAGTCCCAGCAGCATCAGATGGGGCTAAGA
i canFam3.chr33            C 0 C 0
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=3163.000000
s hg38.chr3_KI270935v1_alt    143063 6 +    197351 GAGTGG
s rheMac3.chrUn_JH291127       52493 6 +    111706 AGATGG
i rheMac3.chrUn_JH291127   C 0 I 1
s chlSab2.chr15               437852 6 -  91754291 AGGTGG
i chlSab2.chr15            C 0 I 1
s calJac3.chr17               953668 6 -  74750902 GGGTAG
i calJac3.chr17            C 0 I 1
s mm10.chr16                65448021 6 -  98207768 GGGTCA
i mm10.chr16               C 0 I 1
s canFam3.chr33             29083013 6 +  31377067 GGATTG
i canFam3.chr33            C 0 C 0
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 83594 7 - 187378091 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120906911 0 + 123690457 C

a score=2346.000000
s hg38.chr3_KI270935v1_alt    143069 6 +    197351 AACCCT--
s rheMac3.chrUn_JH291127       52500 6 +    111706 AACTCT--
i rheMac3.chrUn_JH291127   I 1 I 1
s papAnu2.chr2                 83601 6 - 187378091 AACCCT--
i papAnu2.chr2             I 7 I 1
s chlSab2.chr15               437859 6 -  91754291 AACCCT--
i chlSab2.chr15            I 1 T 6584
s calJac3.chr17               953675 6 -  74750902 GACCCC--
i calJac3.chr17            I 1 C 0
s mm10.chr16                65448028 6 -  98207768 TGTCCT--
i mm10.chr16               I 1 I 2
s canFam3.chr33             29083019 6 +  31377067 --CTCCCC
i canFam3.chr33            C 0 C 0
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120906911 0 + 123690457 C

a score=443.000000
s hg38.chr3_KI270935v1_alt    143075 1 +    197351 C
s rheMac3.chrUn_JH291127       52507 1 +    111706 C
i rheMac3.chrUn_JH291127   I 1 C 0
s papAnu2.chr2                 83608 1 - 187378091 C
i papAnu2.chr2             I 1 C 0
s calJac3.chr17               953681 1 -  74750902 C
i calJac3.chr17            C 0 C 0
s mm10.chr16                65448036 1 -  98207768 T
i mm10.chr16               I 2 C 0
s canFam3.chr33             29083025 1 +  31377067 T
i canFam3.chr33            C 0 I 3
e chlSab2.chr15               437865 6584 -  91754291 T
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120906911 0 + 123690457 C

a score=-1521.000000
s hg38.chr3_KI270935v1_alt    143076 3 +    197351 TCT
s rheMac3.chrUn_JH291127       52508 1 +    111706 T--
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 83609 3 - 187378091 TCT
i papAnu2.chr2             C 0 C 0
s calJac3.chr17               953682 3 -  74750902 TCC
i calJac3.chr17            C 0 C 0
s mm10.chr16                65448037 1 -  98207768 T--
i mm10.chr16               C 0 C 0
e canFam3.chr33             29083026 3 +  31377067 I
e chlSab2.chr15               437865 6584 -  91754291 T
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120906911 0 + 123690457 C

a score=7258.000000
s hg38.chr3_KI270935v1_alt    143079 40 +    197351 CCATCGCTCAGGGGGTGGAGC---------------------------------CCTCCCTCCATCGCTCAGT
s nomLeu3.chr11            120906911 35 + 123690457 -----GCTCAGGGGGTGGAGC---------------------------------CCTCCTTCCATCACTCAGG
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr2                 83612 72 - 187378091 CCATCACTCA-GGAGTGTAGACACTCTCTCTCCATCAGTCACAAGTGTAAACAGCCTATCTCCATCACTCAGG
i papAnu2.chr2             C 0 T 90
s calJac3.chr17               953685 39 -  74750902 CCATTTCTCA-GGGGTAGAAA---------------------------------CCTCTCTCCATCAGTCATG
i calJac3.chr17            C 0 C 0
e rheMac3.chrUn_JH291127       52509  0 +    111706 C
e mm10.chr16                65448038  0 -  98207768 C
e canFam3.chr33             29083026  3 +  31377067 I
e chlSab2.chr15               437865 6584 -  91754291 T
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=13453.000000
s hg38.chr3_KI270935v1_alt    143119 35 +    197351 GGGTGGAGCCCTCC--CTCCATCGCTCA-GGGGTGTAG
s nomLeu3.chr11            120906946 35 + 123690457 GAGCGGAGCCCTCC--CTCCGTTGTTCA-GGGGTGTAG
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       52509 21 +    111706 ----------------CTCCATCACTCA-GGAGTGTAG
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 83594 37 - 187378091 AGGTGGAAACCCTGCTCTCCATCACTCA-GGAGTGTAG
i papAnu2.chr2             T 90 C 0
s calJac3.chr17               953724 36 -  74750902 GGGTGAAGATCTCT--CACCATCACTCATGGGGTGGAA
i calJac3.chr17            C 0 C 0
e mm10.chr16                65448038  0 -  98207768 C
e canFam3.chr33             29083026  3 +  31377067 I
e chlSab2.chr15               437865 6584 -  91754291 T
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=5615.000000
s hg38.chr3_KI270935v1_alt    143154 8 +    197351 ACACCCTC-
s panTro4.chr3             199788891 8 + 202329955 ACACCCTC-
i panTro4.chr3             N 0 C 0
s nomLeu3.chr11            120906981 8 + 123690457 ACACCCCC-
i nomLeu3.chr11            C 0 T 29
s rheMac3.chrUn_JH291127       52530 8 +    111706 ACACCCTC-
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 83631 8 - 187378091 ACACTCTC-
i papAnu2.chr2             C 0 C 0
s calJac3.chr17               953760 7 -  74750902 --ATCCTTC
i calJac3.chr17            C 0 C 0
e mm10.chr16                65448038 0 -  98207768 C
e canFam3.chr33             29083026 3 +  31377067 I
e chlSab2.chr15               437865 6584 -  91754291 T
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=910.000000
s hg38.chr3_KI270935v1_alt    143162 1 +    197351 T
s panTro4.chr3             199788899 1 + 202329955 T
i panTro4.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       52538 1 +    111706 T
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 83639 1 - 187378091 T
i papAnu2.chr2             C 0 C 0
s calJac3.chr17               953767 1 -  74750902 T
i calJac3.chr17            C 0 C 0
e mm10.chr16                65448038 0 -  98207768 C
e canFam3.chr33             29083026 3 +  31377067 I
e chlSab2.chr15               437865 6584 -  91754291 T
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120906989 29 + 123690457 T

a score=44811.000000
s hg38.chr3_KI270935v1_alt    143163 52 +    197351 CTCCATCGCTCA-GGGGTGCAGACACCCCATCTCCATCACTTAGGGGGTGGAA
s panTro4.chr3             199788900 52 + 202329955 CTCCATCGCTCA-GGGGTGCAGATACCCCATCTCCATCACTTAGGGGGTGGTA
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120906960 52 + 123690457 CTCCGTTGTTCA-GGGGTGTAGACACCCCCTCTCCATCACTTAGGGGGTGGAA
i nomLeu3.chr11            T 29 C 0
s rheMac3.chrUn_JH291127       52539 52 +    111706 CTCCATCAGTCA-CAAGTGTAGACAGCCTATCTCCATCCCTCAGTGGCTGGAG
i rheMac3.chrUn_JH291127   C 0 I 81
s papAnu2.chr2                 83640 52 - 187378091 CTCCATCAGTCA-CAAGTGTAAACAGCCTATCTCCATCACTCAGGGGGTGGAG
i papAnu2.chr2             C 0 C 0
s calJac3.chr17               953768 52 -  74750902 CTCCATCACTCAGGGGGTGGAGAT-CTCTGTTTCCATTGCTCAGGGGGTGGAG
i calJac3.chr17            C 0 C 0
e mm10.chr16                65448038  0 -  98207768 C
e canFam3.chr33             29083026  3 +  31377067 I
e chlSab2.chr15               437865 6584 -  91754291 T
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=1905.000000
s hg38.chr3_KI270935v1_alt    143215 6 +    197351 CCCTCT
s panTro4.chr3             199788952 6 + 202329955 ACCTCT
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120907012 6 + 123690457 ACCTCT
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr2                 83692 6 - 187378091 CCCTCT
i papAnu2.chr2             C 0 I 72
s calJac3.chr17               953820 4 -  74750902 ACCT--
i calJac3.chr17            C 0 C 0
e rheMac3.chrUn_JH291127       52591 81 +    111706 I
e mm10.chr16                65448038 0 -  98207768 C
e canFam3.chr33             29083026 3 +  31377067 I
e chlSab2.chr15               437865 6584 -  91754291 T
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=2354.000000
s hg38.chr3_KI270935v1_alt    143221 13 +    197351 ATCTATTGCTCAG
s panTro4.chr3             199788958 13 + 202329955 CTCTATCGCTCAG
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120907018 13 + 123690457 CTCCATCGCTGAG
i nomLeu3.chr11            C 0 T 42
e rheMac3.chrUn_JH291127       52591 81 +    111706 I
e mm10.chr16                65448038  0 -  98207768 C
e canFam3.chr33             29083026  3 +  31377067 I
e calJac3.chr17               953824  0 -  74750902 C
e chlSab2.chr15               437865 6584 -  91754291 T
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 83698 72 - 187378091 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=191.000000
s hg38.chr3_KI270935v1_alt    143234 2 +    197351 CA
s panTro4.chr3             199788971 2 + 202329955 CA
i panTro4.chr3             C 0 C 0
e rheMac3.chrUn_JH291127       52591 81 +    111706 I
e mm10.chr16                65448038 0 -  98207768 C
e canFam3.chr33             29083026 3 +  31377067 I
e calJac3.chr17               953824 0 -  74750902 C
e chlSab2.chr15               437865 6584 -  91754291 T
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 83698 72 - 187378091 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T

a score=1953.000000
s hg38.chr3_KI270935v1_alt    143236 4 +    197351 GGTG
s panTro4.chr3             199788973 4 + 202329955 GGTG
i panTro4.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       52672 4 +    111706 GGTA
i rheMac3.chrUn_JH291127   I 81 C 0
s papAnu2.chr2                 83770 4 - 187378091 GGTG
i papAnu2.chr2             I 72 C 0
e mm10.chr16                65448038 0 -  98207768 C
e canFam3.chr33             29083026 3 +  31377067 I
e calJac3.chr17               953824 0 -  74750902 C
e chlSab2.chr15               437865 6584 -  91754291 T
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T

a score=23041.000000
s hg38.chr3_KI270935v1_alt    143240 35 +    197351 TAGACACCCTCTCTCCATCGCTCAG-GGGTGTAGAC
s panTro4.chr3             199788977 35 + 202329955 TAGACACCCTCTCCCCATCGTTCAG-GGGTGTAGAC
i panTro4.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       52676 13 +    111706 TAGACACCCTCTC-----------------------
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 83774 35 - 187378091 TAGACACCCTCTCTCCATCACTCAG-GGGTGTAGAC
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               431281 35 -  91754291 TAGACACCCTCTCTCCATCACTCAG-GGGTGTAGAC
i chlSab2.chr15            T 6584 C 0
s calJac3.chr17               953824 28 -  74750902 --------CTCTCTCCATCACTCAGAGGGTGGAGAT
i calJac3.chr17            C 0 I 30
e mm10.chr16                65448038  0 -  98207768 C
e canFam3.chr33             29083026  3 +  31377067 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T

a score=546.000000
s hg38.chr3_KI270935v1_alt    143275 1 +    197351 A
s panTro4.chr3             199789012 1 + 202329955 A
i panTro4.chr3             C 0 C 0
s papAnu2.chr2                 83809 1 - 187378091 A
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               431316 1 -  91754291 A
i chlSab2.chr15            C 0 C 0
e rheMac3.chrUn_JH291127       52689 0 +    111706 C
e mm10.chr16                65448038 0 -  98207768 C
e canFam3.chr33             29083026 3 +  31377067 I
e calJac3.chr17               953852 30 -  74750902 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T

a score=4573.000000
s hg38.chr3_KI270935v1_alt    143276 6 +    197351 CCCTCC
s panTro4.chr3             199789013 6 + 202329955 CCCTCC
i panTro4.chr3             C 0 C 0
s papAnu2.chr2                 83810 6 - 187378091 CCCTCT
i papAnu2.chr2             C 0 T 118
s chlSab2.chr15               431317 6 -  91754291 CCCTCT
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               953882 6 -  74750902 CTCTCT
i calJac3.chr17            I 30 C 0
e rheMac3.chrUn_JH291127       52689 0 +    111706 C
e mm10.chr16                65448038 0 -  98207768 C
e canFam3.chr33             29083026 3 +  31377067 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T

a score=15451.000000
s hg38.chr3_KI270935v1_alt    143282 18 +    197351 CTTCATCGCTCAGGGGTG
s panTro4.chr3             199789019 18 + 202329955 CTCCATCGCTCAGGGGTG
i panTro4.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       52689 15 +    111706 ---CATCACTCAGCGGTG
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 83698 18 - 187378091 CTCCATCACTCAGGGATG
i papAnu2.chr2             T 118 C 0
s chlSab2.chr15               431323 18 -  91754291 CTCCATCACTCAGGGGTG
i chlSab2.chr15            C 0 T 60
s calJac3.chr17               953888 17 -  74750902 TTCCATGGCTCAGGGGG-
i calJac3.chr17            C 0 C 0
e mm10.chr16                65448038  0 -  98207768 C
e canFam3.chr33             29083026  3 +  31377067 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T

a score=33827.000000
s hg38.chr3_KI270935v1_alt    143300 36 +    197351 TAGACACCCTCCCTTCATCGCTCAGGGGTGTAGACA
s panTro4.chr3             199789037 36 + 202329955 TAGACACCCTCCCTCCATCGCTCAGGGGTGTAGACA
i panTro4.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       52704 36 +    111706 TAGACACCCTCTCTCCATCACTCAGCGGTGTAGACA
i rheMac3.chrUn_JH291127   C 0 T 149
s papAnu2.chr2                 83716 34 - 187378091 TAGACACC--CTCTCCATCACTCAGCGGTGTAGACA
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               431281 36 -  91754291 TAGACACCCTCTCTCCATCACTCAGGGGTGTAGACA
i chlSab2.chr15            T 60 C 0
s calJac3.chr17               953905 34 -  74750902 TGGAGACT-TCTCTCCATTGTTCAGGGG-GTGGAGA
i calJac3.chr17            C 0 T 87
e mm10.chr16                65448038  0 -  98207768 C
e canFam3.chr33             29083026  3 +  31377067 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T

a score=4555.000000
s hg38.chr3_KI270935v1_alt    143336 4 +    197351 CCCT
s panTro4.chr3             199789073 4 + 202329955 CCTT
i panTro4.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       52591 4 +    111706 CCCT
i rheMac3.chrUn_JH291127   T 149 C 0
s papAnu2.chr2                 83750 4 - 187378091 CCCT
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               431317 4 -  91754291 CCCT
i chlSab2.chr15            C 0 I 6545
s calJac3.chr17               953852 4 -  74750902 CTCT
i calJac3.chr17            T 87 C 0
e mm10.chr16                65448038 0 -  98207768 C
e canFam3.chr33             29083026 3 +  31377067 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T

a score=21059.000000
s hg38.chr3_KI270935v1_alt    143340 20 +    197351 CTCTCCATCGCTCA-GGGGTG
s panTro4.chr3             199789077 20 + 202329955 CCCTCCATCGCTCA-GGGGTG
i panTro4.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       52595 20 +    111706 GTCTCCATCACTCA-GCGGTG
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 83754 20 - 187378091 CTCTCCATCACTCA-GGGGTG
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               437866 20 -  91754291 CTCTCCATCACTCA-GGAGTG
i chlSab2.chr15            I 6545 T 6605
s calJac3.chr17               953856 21 -  74750902 CTCTCCATGGCTCAGGGGGTG
i calJac3.chr17            C 0 C 0
e mm10.chr16                65448038  0 -  98207768 C
e canFam3.chr33             29083026  3 +  31377067 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T

a score=38585.000000
s hg38.chr3_KI270935v1_alt    143360 45 +    197351 TAGACACCCTCTCTCCATCGCTCAGGGGTGTAGACACCCTCTCTC
s panTro4.chr3             199789097 32 + 202329955 TAGACACCCTCTCTCCATCGCTCAGGGGTGTA-------------
i panTro4.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       52615 45 +    111706 TAGACACCCTCTCTCCATCACTAAGGGGTGTAGACACCCTCTCTC
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 83774 45 - 187378091 TAGACACCCTCTCTCCATCACTCAGGGGTGTAGACACCCTCTCTC
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               431281 45 -  91754291 TAGACACCCTCTCTCCATCACTCAGGGGTGTAGACACCCTCTCTC
i chlSab2.chr15            T 6605 I 6601
s calJac3.chr17               953877 42 -  74750902 GAGAT-CTCTCTTTCCATGGCTCAGGGG-GTGGAGA-CTTCTCTC
i calJac3.chr17            C 0 C 0
e mm10.chr16                65448038  0 -  98207768 C
e canFam3.chr33             29083026  3 +  31377067 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T

a score=8517.000000
s hg38.chr3_KI270935v1_alt    143405 35 +    197351 CATCGCTC-AGGGGTGCAGACACCCCATCTCCATCA
s rheMac3.chrUn_JH291127       52660 34 +    111706 CATAACTCAGGGGGTATAGACACC--CTCTCCATCA
i rheMac3.chrUn_JH291127   C 0 I 150
s papAnu2.chr2                 83819 35 - 187378091 CATCACTC-GGGGGTGTAGACACCCTCTCTCCATCA
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               437927 33 -  91754291 CATCACTC-AGGAGTATAGACACC--CTCTCCATCA
i chlSab2.chr15            I 6601 T 6451
s calJac3.chr17               953919  8 -  74750902 CATTGTTC----------------------------
i calJac3.chr17            C 0 C 0
e mm10.chr16                65448038  0 -  98207768 C
e canFam3.chr33             29083026  3 +  31377067 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T
e panTro4.chr3             199789129  0 + 202329955 C

a score=7599.000000
s hg38.chr3_KI270935v1_alt    143440 13 +    197351 CTTAGGGGGTGGA
s rheMac3.chrUn_JH291127       52844 13 +    111706 CTCAGGGGGTGGA
i rheMac3.chrUn_JH291127   I 150 C 0
s papAnu2.chr2                 83854 13 - 187378091 CTCAGGGGGTGGA
i papAnu2.chr2             C 0 T 176
s chlSab2.chr15               431509 10 -  91754291 CTC---GGGTGGA
i chlSab2.chr15            T 6451 C 0
s calJac3.chr17               953927 10 -  74750902 ---AGGGGGTGGA
i calJac3.chr17            C 0 C 0
e mm10.chr16                65448038  0 -  98207768 C
e canFam3.chr33             29083026  3 +  31377067 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T
e panTro4.chr3             199789129  0 + 202329955 C

a score=205.000000
s hg38.chr3_KI270935v1_alt    143453 1 +    197351 A
s rheMac3.chrUn_JH291127       52857 1 +    111706 G
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 83691 1 - 187378091 G
i papAnu2.chr2             T 176 I 263
s chlSab2.chr15               431519 1 -  91754291 A
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               953937 1 -  74750902 G
i calJac3.chr17            C 0 C 0
e mm10.chr16                65448038 0 -  98207768 C
e canFam3.chr33             29083026 3 +  31377067 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T
e panTro4.chr3             199789129 0 + 202329955 C

a score=11054.000000
s hg38.chr3_KI270935v1_alt    143454 31 +    197351 ACCTCTCTCTATCACTCAGCAGGTGTGGACA---
s panTro4.chr3             199789129  4 + 202329955 ---------------------------GACA---
i panTro4.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       52858 30 +    111706 CCCTCTCTCCATCACTCTG-GGGTGTAGACA---
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 83955 31 - 187378091 ATCTCTCTCCATGGTTCAGCAGGTGTAGACA---
i papAnu2.chr2             I 263 T 294
s chlSab2.chr15               431520 31 -  91754291 ATCTCTTTCCATGGCTCAGCAGGTGTAGACA---
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               953938 34 -  74750902 ATCTCTCTCCATCTCTCGGGGGGTGGAGATTCTT
i calJac3.chr17            C 0 C 0
e mm10.chr16                65448038  0 -  98207768 C
e canFam3.chr33             29083026  3 +  31377067 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T

a score=2345.000000
s hg38.chr3_KI270935v1_alt    143485 2 +    197351 CC
s panTro4.chr3             199789133 2 + 202329955 CC
i panTro4.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       52888 2 +    111706 CC
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 83692 2 - 187378091 CC
i papAnu2.chr2             T 294 C 0
s chlSab2.chr15               431551 2 -  91754291 CC
i chlSab2.chr15            C 0 I 6407
s calJac3.chr17               953972 2 -  74750902 CT
i calJac3.chr17            C 0 C 0
e mm10.chr16                65448038 0 -  98207768 C
e canFam3.chr33             29083026 3 +  31377067 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T

a score=9061.000000
s hg38.chr3_KI270935v1_alt    143487 12 +    197351 CTCTCTCCATCG
s panTro4.chr3             199789135 12 + 202329955 CTCTCTCCATCG
i panTro4.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       52890 12 +    111706 CTCGCTCCAACA
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 83694 12 - 187378091 CTCTCTCCATCA
i papAnu2.chr2             C 0 C 0
s calJac3.chr17               953974 12 -  74750902 CTCTCTCCATCA
i calJac3.chr17            C 0 C 0
e mm10.chr16                65448038  0 -  98207768 C
e canFam3.chr33             29083026  3 +  31377067 I
e chlSab2.chr15               431553 6407 -  91754291 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T

a score=23320.000000
s hg38.chr3_KI270935v1_alt    143499 30 +    197351 CTCA-GGGGTGTAGACACCCTCCCTTCATCG
s panTro4.chr3             199789147 30 + 202329955 CTCA-GGGGTGTAGACACCCTCCCTTCATCG
i panTro4.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       52902 28 +    111706 CTCA-GGATTTTAGACACCCTCTC--CATCA
i rheMac3.chrUn_JH291127   C 0 T 236
s papAnu2.chr2                 83706 28 - 187378091 CTCA-GGGATGTAGACACCCTCTC--CATCA
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               437960 28 -  91754291 CTCA-GGAGTGTAGACACCCTCTC--CATCA
i chlSab2.chr15            I 6407 C 0
s calJac3.chr17               953986 28 -  74750902 CTCAGGGGGTGGAGAT-CTCTCTC--CATCT
i calJac3.chr17            C 0 C 0
e mm10.chr16                65448038  0 -  98207768 C
e canFam3.chr33             29083026  3 +  31377067 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T

a score=107303.000000
s hg38.chr3_KI270935v1_alt    143529 115 +    197351 CTCAGGGGTGTAGACAT-CCTCTCTCCATCGCTCAGGGGTGTAGACAACCTCTCTCCATCGCTCAGGGGTGTAGACACCCCCTCTCCATCGCTC-AGGGGTGTAGACACCCCCTCTC
s panTro4.chr3             199789177 115 + 202329955 CTCAGGGGTGTAGACAC-CCTCTCTCCATCACTCAGGGGTGCAGACACCCCATCTCCATCGCTCAGGGGTGCAGACACCCCATCTCCATCGCTC-AGGGGTGCAGACACCCCATCTC
i panTro4.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       52694 115 +    111706 CTCAGCGGTGTAGACAC-CCTCTCTCCATCACTCAGCGGTGTAGACAACCTCTCTCCATCGCTCGGGGGTGTAGACACCCTCTCTCCATCACTC-AGGGGTGTAGACACCCTCTCTC
i rheMac3.chrUn_JH291127   T 236 I 66
s papAnu2.chr2                 83734 115 - 187378091 CTCAGCGGTGTAGACAC-CCTCTCTCCATCACTCAGGGGTGTAGACACCCTCTCTCCATCACTCAGGGGTGTAGACACCCTCTCTCCATCACTC-GGGGGTGTAGACACCCTCTCTC
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               437988 113 -  91754291 ATCAGGAGTGTAGACAC-TCTCTCTCCATCAGTCACAAGTGTAGACAGCCTATCTCCATCACTCAGGGATGTACACACC--CTCTCCATCACTC-AGCGGTGTAGACACCCTCTCTC
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               954014 111 -  74750902 CTCAGGGG-GTAGAGATGTCTCTCTCCATCTCTCAGGGGGTGGAGCTGTCTCTCTCCATCACTCAGGGG-GTGGAGATC-TCTCTCCATCACTCAAGGGGTGGAG---CTCTCTCTC
i calJac3.chr17            C 0 C 0
e mm10.chr16                65448038   0 -  98207768 C
e canFam3.chr33             29083026   3 +  31377067 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031  42 + 123690457 T

a score=6628.000000
s hg38.chr3_KI270935v1_alt    143644 8 +    197351 CATCGCTC
s panTro4.chr3             199789292 8 + 202329955 CATCACTT
i panTro4.chr3             C 0 C 0
s papAnu2.chr2                 83849 8 - 187378091 CATCACTC
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               438101 8 -  91754291 CATCACTC
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               954125 8 -  74750902 CATCACTC
i calJac3.chr17            C 0 C 0
e rheMac3.chrUn_JH291127       52809 66 +    111706 I
e mm10.chr16                65448038 0 -  98207768 C
e canFam3.chr33             29083026 3 +  31377067 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T

a score=2999.000000
s hg38.chr3_KI270935v1_alt    143652 5 +    197351 AGGGG
s panTro4.chr3             199789300 5 + 202329955 AGCGG
i panTro4.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       52875 5 +    111706 TGGGG
i rheMac3.chrUn_JH291127   I 66 C 0
s papAnu2.chr2                 83857 4 - 187378091 -AGGG
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               438109 5 -  91754291 AGGGC
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               954133 5 -  74750902 AGGGG
i calJac3.chr17            C 0 C 0
e mm10.chr16                65448038 0 -  98207768 C
e canFam3.chr33             29083026 3 +  31377067 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T

a score=3312.000000
s hg38.chr3_KI270935v1_alt    143657 6 +    197351 TGTGGA
s rheMac3.chrUn_JH291127       52880 6 +    111706 TGTAGA
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 83861 6 - 187378091 GGTGGA
i papAnu2.chr2             C 0 T 147
s chlSab2.chr15               438114 6 -  91754291 TATAGA
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               954138 5 -  74750902 -GTGGA
i calJac3.chr17            C 0 C 0
e mm10.chr16                65448038 0 -  98207768 C
e canFam3.chr33             29083026 3 +  31377067 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T
e panTro4.chr3             199789305 0 + 202329955 C

a score=6642.000000
s hg38.chr3_KI270935v1_alt    143663 29 +    197351 CACCCT--CTCCATCTCTCAGAGGTGTAGAC
s rheMac3.chrUn_JH291127       52886 31 +    111706 CACCCTCGCTCCAACACTCAGGATTTTAGAC
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 83720 29 - 187378091 CACCCT--CTCCATCACTCAGCGGTGTAGAC
i papAnu2.chr2             T 147 I 118
s chlSab2.chr15               438120 29 -  91754291 CACCCT--CTCCATCACTCAGCGGTGTAGAC
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               954143  4 -  74750902 -----------------------GTGT----
i calJac3.chr17            C 0 C 0
e mm10.chr16                65448038  0 -  98207768 C
e canFam3.chr33             29083026  3 +  31377067 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T
e panTro4.chr3             199789305  0 + 202329955 C

a score=51622.000000
s hg38.chr3_KI270935v1_alt    143692 89 +    197351 ACCCCCTCTCCATCGCTCAGGGATGTAGACACCCCCTCTCCATCGCTCAGGGGTGTAGACACCCCCTCTCCATCGCTCAG-GGGTGTAGA
s rheMac3.chrUn_JH291127       52917 87 +    111706 --ACCCTCTCCATCACTCAGGTGCGTAGACATCATCTCTACATCACTCAGGGGTGTAGACACCCTCTCTCCATCGCTCGG-GGGTGTAGA
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 83867 89 - 187378091 GCCCTCTCTCCATCACTCAGGGGTGTAGACACCCTCTCTCCATCGCTCGGGGGTGTAGACACCCTCTCTCCATCACTCGG-GTGTGGAAA
i papAnu2.chr2             I 118 C 0
s chlSab2.chr15               438149 87 -  91754291 ACCCTCTCTCCATCACTCAGGGCTATAGACACC--CTCTCCATCACTCAGCGGTGTAGACACCCTCTCTCCATCACTCAG-GGCTATAGA
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               954147 85 -  74750902 ---CTCTCTCCATCACTCAGGGG-GTGGAGTGTCTCTCTCCATCACTCAGGGG-GTGGAGTGTCTCTCTCCATCGCTCAGTGGGTGGAGA
i calJac3.chr17            C 0 C 0
e mm10.chr16                65448038  0 -  98207768 C
e canFam3.chr33             29083026  3 +  31377067 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T
e panTro4.chr3             199789305  0 + 202329955 C

a score=5628.000000
s hg38.chr3_KI270935v1_alt    143781 13 +    197351 CACCCCCTCTCCA
s rheMac3.chrUn_JH291127       53004 13 +    111706 CACCCTCTCTCCA
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 83956 10 - 187378091 ---TCTCTCTCCA
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               438236 13 -  91754291 CACCCTCTCTCCA
i chlSab2.chr15            C 0 T 6891
e mm10.chr16                65448038  0 -  98207768 C
e canFam3.chr33             29083026  3 +  31377067 I
e calJac3.chr17               954232  0 -  74750902 C
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T
e panTro4.chr3             199789305  0 + 202329955 C

a score=8658.000000
s hg38.chr3_KI270935v1_alt    143794 21 +    197351 TCGCTCAG-GGGTGTAGACACC
s rheMac3.chrUn_JH291127       53017 21 +    111706 TCGCTCGG-GGGTGTAGACACC
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 83966 22 - 187378091 TGGTTCAGCAGGTGTAGACACC
i papAnu2.chr2             C 0 T 118
s chlSab2.chr15               431358 21 -  91754291 TCACTCAG-GGGTGTAGACACC
i chlSab2.chr15            T 6891 C 0
e mm10.chr16                65448038  0 -  98207768 C
e canFam3.chr33             29083026  3 +  31377067 I
e calJac3.chr17               954232  0 -  74750902 C
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T
e panTro4.chr3             199789305  0 + 202329955 C

a score=6742.000000
s hg38.chr3_KI270935v1_alt    143815 15 +    197351 CTCCCTTCATCGCTC
s rheMac3.chrUn_JH291127       53038 15 +    111706 CTCTCTCCATCGCTC
i rheMac3.chrUn_JH291127   C 0 T 244
s papAnu2.chr2                 83870 15 - 187378091 CTCTCTCCATCACTC
i papAnu2.chr2             T 118 C 0
s chlSab2.chr15               431379 15 -  91754291 CTCTCTCCATAACTC
i chlSab2.chr15            C 0 C 0
e mm10.chr16                65448038  0 -  98207768 C
e canFam3.chr33             29083026  3 +  31377067 I
e calJac3.chr17               954232  0 -  74750902 C
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T
e panTro4.chr3             199789305  0 + 202329955 C

a score=573.000000
s hg38.chr3_KI270935v1_alt    143830 2 +    197351 AG
s papAnu2.chr2                 83885 2 - 187378091 AG
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               431394 2 -  91754291 AG
i chlSab2.chr15            C 0 T 70
e rheMac3.chrUn_JH291127       53053 244 +    111706 T
e mm10.chr16                65448038 0 -  98207768 C
e canFam3.chr33             29083026 3 +  31377067 I
e calJac3.chr17               954232 0 -  74750902 C
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T
e panTro4.chr3             199789305 0 + 202329955 C

a score=975.000000
s hg38.chr3_KI270935v1_alt    143832 30 +    197351 GGGTGCTCAGGGCTATAGACACCCTCCCTT
s papAnu2.chr2                 83887 20 - 187378091 GGGTG----------TAGACACCCTCTCTC
i papAnu2.chr2             C 0 C 0
e rheMac3.chrUn_JH291127       53053 244 +    111706 T
e mm10.chr16                65448038  0 -  98207768 C
e canFam3.chr33             29083026  3 +  31377067 I
e calJac3.chr17               954232  0 -  74750902 C
e chlSab2.chr15               431396 70 -  91754291 T
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T
e panTro4.chr3             199789305  0 + 202329955 C

a score=10669.000000
s hg38.chr3_KI270935v1_alt    143862 20 +    197351 CATCGCTCAGGGGTGTAGAC
s rheMac3.chrUn_JH291127       52809 20 +    111706 CATCACTCAGGGGTGTAGAC
i rheMac3.chrUn_JH291127   T 244 I 28
s papAnu2.chr2                 83907 20 - 187378091 CATCGCTCGGGGGTGTAGAC
i papAnu2.chr2             C 0 T 60
s chlSab2.chr15               431326 20 -  91754291 CATCACTCAGGGGTGTAGAC
i chlSab2.chr15            T 70 C 0
e mm10.chr16                65448038  0 -  98207768 C
e canFam3.chr33             29083026  3 +  31377067 I
e calJac3.chr17               954232  0 -  74750902 C
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T
e panTro4.chr3             199789305  0 + 202329955 C

a score=667.000000
s hg38.chr3_KI270935v1_alt    143882 2 +    197351 AC
s rheMac3.chrUn_JH291127       52857 2 +    111706 GC
i rheMac3.chrUn_JH291127   I 28 C 0
s papAnu2.chr2                 83867 2 - 187378091 GC
i papAnu2.chr2             T 60 C 0
s chlSab2.chr15               431346 2 -  91754291 AC
i chlSab2.chr15            C 0 C 0
e mm10.chr16                65448038 0 -  98207768 C
e canFam3.chr33             29083026 3 +  31377067 I
e calJac3.chr17               954232 0 -  74750902 C
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T
e panTro4.chr3             199789305 0 + 202329955 C

a score=49027.000000
s hg38.chr3_KI270935v1_alt    143884 82 +    197351 CCTCTCTCCATCGCTCAGGGGTGTAGACACCCTCTCTCCATCGCTC-AGGGGTGTAGACACCCTCTCTCCATCGCTCAGGGGT
s rheMac3.chrUn_JH291127       52859 80 +    111706 CCTCTCTCCATCACTCTGGGGTGTAGACACCCTCGCTCCAACACTC-AGGATTTTAGACACC--CTCTCCATCACTCAGGTGC
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 83869 82 - 187378091 CCTCTCTCCATCACTCAGGGGTGTAGACACCCTCTCTCCATCGCTC-GGGGGTGTAGACACCCTCTCTCCATCACTCGGGTGT
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               431348 81 -  91754291 CCTCTCTCCATCACTCAGGGGTGTAGACACCCTCTCTCCATAACTCAGGGGGTGTAGACACC--CTCTCCATCACTCAGGGGT
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               954232 78 -  74750902 TCTCTCTCCATCACTCAGGGG-GTGGAGA-TCTCTCTCCATCACTCAGGGGGTGGAGTGTCT--CTCTCCATCACTCAGGGG-
i calJac3.chr17            C 0 C 0
e mm10.chr16                65448038  0 -  98207768 C
e canFam3.chr33             29083026  3 +  31377067 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T
e panTro4.chr3             199789305  0 + 202329955 C

a score=12723.000000
s hg38.chr3_KI270935v1_alt    143966 24 +    197351 GTGGACACCCTCTCTCCATCGCTC
s panTro4.chr3             199789305 23 + 202329955 GTGGA-AACCTCTGTCCATCGTTC
i panTro4.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       52939 24 +    111706 GTAGACATCATCTCTACATCACTC
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 83951 21 - 187378091 G--GAAATC-TCTCTCCATGGTTC
i papAnu2.chr2             C 0 T 145
s chlSab2.chr15               431429 24 -  91754291 GTAGACACCCTCTCTCCATAACTC
i chlSab2.chr15            C 0 I 1
s calJac3.chr17               954310 23 -  74750902 GTGGAGATC-TCTCTCCATCTCTC
i calJac3.chr17            C 0 C 0
e mm10.chr16                65448038  0 -  98207768 C
e canFam3.chr33             29083026  3 +  31377067 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T

a score=7333.000000
s hg38.chr3_KI270935v1_alt    143990 18 +    197351 AGGGGTGTAGA-----CACCCTC
s panTro4.chr3             199789328 14 + 202329955 AGGGGTGTAGA-----CAC----
i panTro4.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       52963 14 +    111706 AGGGGTGTAGA-----CAC----
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 83827 18 - 187378091 GGGGGTGTAGA-----CACCCTC
i papAnu2.chr2             T 145 I 22
s chlSab2.chr15               431454 13 -  91754291 GGGGGTGTAGA-----CA-----
i chlSab2.chr15            I 1 C 0
s calJac3.chr17               954333 16 -  74750902 -AGGGTGTGGAGCTCTC------
i calJac3.chr17            C 0 C 0
e mm10.chr16                65448038  0 -  98207768 C
e canFam3.chr33             29083026  3 +  31377067 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T

a score=1854.000000
s hg38.chr3_KI270935v1_alt    144008 51 +    197351 CCTTCATCGCTCAGGGGTGTGGACA-CCCTCTCTATCGTTCGGGGTGTAGAC
s calJac3.chr17               954349 51 -  74750902 TCTCCATCACTCACGGG-GTGGAGATCTCTCTCCATCTCTCAGGGGGTGGAG
i calJac3.chr17            C 0 C 0
e rheMac3.chrUn_JH291127       52977  0 +    111706 C
e mm10.chr16                65448038  0 -  98207768 C
e canFam3.chr33             29083026  3 +  31377067 I
e chlSab2.chr15               431467  0 -  91754291 C
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 83845 22 - 187378091 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T
e panTro4.chr3             199789342  0 + 202329955 C

a score=64979.000000
s hg38.chr3_KI270935v1_alt    144059 78 +    197351 ATCCTCTCTCCATCGCTCAGGGGTGTAGACACCCCCTCTCCATCGCTC-AGGGGTGTAGACACCCTCTCTCCATCGCTC
s panTro4.chr3             199789342 76 + 202329955 --CCTCTCTCCATCGCTCAGGGGTGTAGACACCCCCTCTCCATCACTC-AGGGGTGTAGACACCCTCTCTCCATTGCTC
i panTro4.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       52977 76 +    111706 --CCTCTCTCCATCGCTCGGGGGTGTAGACACCCTCTCTCCATCGCTC-GGGGGTGTAGACACCCTCTCTCCATCGCTC
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 83867 78 - 187378091 GCCCTCTCTCCATCACTCAGGGGTGTAGACACCCTCTCTCCATCGCTC-GGGGGTGTAGACACCCTCTCTCCATCACTC
i papAnu2.chr2             I 22 T 100
s chlSab2.chr15               431467 45 -  91754291 ---CCCTCTCCATCGCTCAGGGGTGTAGACACCCTCTCTCCATCGCTC-------------------------------
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               954400 73 -  74750902 -ATCTCTCTCCATCACTCA-GGGTGTGGA-GCTCTCTCTCCATCACTCAGGGGGTGGAGA---TCTCTCTCCATCACTC
i calJac3.chr17            C 0 C 0
e mm10.chr16                65448038  0 -  98207768 C
e canFam3.chr33             29083026  3 +  31377067 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T

a score=1614.000000
s hg38.chr3_KI270935v1_alt    144137 18 +    197351 -AGGGGTGCAGACACCCCA
s panTro4.chr3             199789418 18 + 202329955 -AGGGGTGCAGACACCCCA
i panTro4.chr3             C 0 C 0
s calJac3.chr17               954473 17 -  74750902 AGGGGGTGGAGTGTCTC--
i calJac3.chr17            C 0 C 0
e rheMac3.chrUn_JH291127       53053  0 +    111706 C
e mm10.chr16                65448038  0 -  98207768 C
e canFam3.chr33             29083026  3 +  31377067 I
e chlSab2.chr15               431512  0 -  91754291 C
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 83945 100 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T

a score=42908.000000
s hg38.chr3_KI270935v1_alt    144155 56 +    197351 TCTCCATCACTTAGGGGGTGGAA-ACCTCTCTCTATCGCTCAGCAGGTGTAGACACC
s panTro4.chr3             199789436 56 + 202329955 TCTCCATCACTTAGCGGGTGGAA-ACCTCTCTCTATCGCTCAGCAGGTGTAGACACC
i panTro4.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       53053 41 +    111706 ---------------GGGTGGAA-ATCTCTCTCCATGGCTCAGCAGGTGTAGACACC
i rheMac3.chrUn_JH291127   C 0 T 116
s papAnu2.chr2                 83845 55 - 187378091 TCTCCATCACTCAGGGGGTGGAG-CCCTCTCTCCATCACTCAG-GGGTGTAGACACC
i papAnu2.chr2             T 100 C 0
s chlSab2.chr15               431512 41 -  91754291 ---------------GGGTGGAA-ATCTCTTTCCATGGCTCAGCAGGTGTAGACACC
i chlSab2.chr15            C 0 T 41
s calJac3.chr17               954490 54 -  74750902 TCTCCATCACTCAGGGGGTGGAGTGTCTCTCTCCATTGCTCAGTGGGTGGAGAT---
i calJac3.chr17            C 0 C 0
e mm10.chr16                65448038  0 -  98207768 C
e canFam3.chr33             29083026  3 +  31377067 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T

a score=22080.000000
s hg38.chr3_KI270935v1_alt    144211 41 +    197351 CTCTCTCCATCGCTCAGGGGTGCAGACACCCCATCTCCATC
s panTro4.chr3             199789492 29 + 202329955 CTCTCTCCATCGCTCAGAGGTGTAGACAC------------
i panTro4.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       52978 41 +    111706 CTCTCTCCATCGCTCGGGGGTGTAGACACCCTCTCTCCATC
i rheMac3.chrUn_JH291127   T 116 T 273
s papAnu2.chr2                 83900 41 - 187378091 CTCTCTCCATCGCTCGGGGGTGTAGACACCCTCTCTCCATC
i papAnu2.chr2             C 0 C 0
s calJac3.chr17               954544 39 -  74750902 CTCTCTCTATCACTCAGGGG-GTGGA-GCTCTCTCCCCATC
i calJac3.chr17            C 0 C 0
e mm10.chr16                65448038  0 -  98207768 C
e canFam3.chr33             29083026  3 +  31377067 I
e chlSab2.chr15               431553 41 -  91754291 T
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T

a score=884.000000
s hg38.chr3_KI270935v1_alt    144252 4 +    197351 ACTT
s papAnu2.chr2                 83941 4 - 187378091 ACTC
i papAnu2.chr2             C 0 T 159
s calJac3.chr17               954583 4 -  74750902 ACTC
i calJac3.chr17            C 0 C 0
e rheMac3.chrUn_JH291127       53019 273 +    111706 T
e mm10.chr16                65448038 0 -  98207768 C
e canFam3.chr33             29083026 3 +  31377067 I
e chlSab2.chr15               431553 41 -  91754291 T
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T
e panTro4.chr3             199789521 0 + 202329955 C

a score=291.000000
s hg38.chr3_KI270935v1_alt    144256 3 +    197351 AGG
s calJac3.chr17               954587 3 -  74750902 AGG
i calJac3.chr17            C 0 C 0
e rheMac3.chrUn_JH291127       53019 273 +    111706 T
e mm10.chr16                65448038 0 -  98207768 C
e canFam3.chr33             29083026 3 +  31377067 I
e chlSab2.chr15               431553 41 -  91754291 T
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 83945 159 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T
e panTro4.chr3             199789521 0 + 202329955 C

a score=1294.000000
s hg38.chr3_KI270935v1_alt    144259 41 +    197351 GGGTGGAAACCTCTCTCTATCGCTCAGC-----AGGTGTAGGCACC
s panTro4.chr3             199789521  9 + 202329955 ---------CCTCTCTCT----------------------------
i panTro4.chr3             C 0 C 0
s chlSab2.chr15               431512 41 -  91754291 GGGTGGAAATCTCTTTCCATGGCTCAGC-----AGGTGTAGACACC
i chlSab2.chr15            T 41 T 260
s calJac3.chr17               954590 40 -  74750902 GGGTGGAG-TGTCTCTCCATCGCTCATCCCTCGGGGCGTGG-----
i calJac3.chr17            C 0 C 0
e rheMac3.chrUn_JH291127       53019 273 +    111706 T
e mm10.chr16                65448038  0 -  98207768 C
e canFam3.chr33             29083026  3 +  31377067 I
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 83945 159 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T

a score=0.000000
s hg38.chr3_KI270935v1_alt    144300 3 +    197351 CCC
e rheMac3.chrUn_JH291127       53019 273 +    111706 T
e mm10.chr16                65448038 0 -  98207768 C
e canFam3.chr33             29083026 3 +  31377067 I
e calJac3.chr17               954630 0 -  74750902 C
e chlSab2.chr15               431553 260 -  91754291 T
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 83945 159 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T
e panTro4.chr3             199789530 0 + 202329955 C

a score=37096.000000
s hg38.chr3_KI270935v1_alt    144303 38 +    197351 CTCCATCGCTCAGGGGTGTAGACACCCTCTCTCCATCA
s panTro4.chr3             199789530 34 + 202329955 ----ATCGCTCACGGGTGCAGACACCCTCTCTCCATCG
i panTro4.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       52746 38 +    111706 CTCCATCGCTCGGGGGTGTAGACACCCTCTCTCCATCA
i rheMac3.chrUn_JH291127   T 273 C 0
s papAnu2.chr2                 83786 38 - 187378091 CTCCATCACTCAGGGGTGTAGACACCCTCTCTCCATCA
i papAnu2.chr2             T 159 C 0
s chlSab2.chr15               431293 38 -  91754291 CTCCATCACTCAGGGGTGTAGACACCCTCTCTCCATCA
i chlSab2.chr15            T 260 C 0
s calJac3.chr17               954630 23 -  74750902 ------------GGGGTGCAG---CCCTCTCTCCATCA
i calJac3.chr17            C 0 T 183
e mm10.chr16                65448038  0 -  98207768 C
e canFam3.chr33             29083026  3 +  31377067 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T

a score=17895.000000
s hg38.chr3_KI270935v1_alt    144341 21 +    197351 CTCAGGGGTGCAGACACCCCA
s panTro4.chr3             199789564 21 + 202329955 ATCAGGGGTGCAGACACCCCA
i panTro4.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       52784 21 +    111706 CTCAGGGGTGTAGACACCCTC
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 83824 21 - 187378091 CTCGGGGGTGTAGACACCCTC
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               431331 21 -  91754291 CTCAGGGGTGTAGACACCCTC
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               954470 20 -  74750902 CTCAGGGG-GTGGAGTGTCTC
i calJac3.chr17            T 183 C 0
e mm10.chr16                65448038  0 -  98207768 C
e canFam3.chr33             29083026  3 +  31377067 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907031 42 + 123690457 T

a score=29358.000000
s hg38.chr3_KI270935v1_alt    144362 17 +    197351 TCTCCATCACTTAGGGG
s panTro4.chr3             199789585 17 + 202329955 TCTCCATCTCTTAGCAG
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120906989 17 + 123690457 TCTCCATCACTTAGGGG
i nomLeu3.chr11            T 42 C 0
s rheMac3.chrUn_JH291127       52805 17 +    111706 TCTCCATCACTCAGGGG
i rheMac3.chrUn_JH291127   C 0 I 272
s papAnu2.chr2                 83845 17 - 187378091 TCTCCATCACTCAGGGG
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               431352 17 -  91754291 TCTCCATCACTCAGGGG
i chlSab2.chr15            C 0 I 184
s calJac3.chr17               954490 17 -  74750902 TCTCCATCACTCAGGGG
i calJac3.chr17            C 0 C 0
e mm10.chr16                65448038  0 -  98207768 C
e canFam3.chr33             29083026  3 +  31377067 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=3091.000000
s hg38.chr3_KI270935v1_alt    144379 7 +    197351 GTGGAAA
s panTro4.chr3             199789602 7 + 202329955 GTGGAAA
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120907006 7 + 123690457 GTGGAAA
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr2                 83862 7 - 187378091 GTGGAGC
i papAnu2.chr2             C 0 I 103
s calJac3.chr17               954507 5 -  74750902 GTGGA--
i calJac3.chr17            C 0 C 0
e rheMac3.chrUn_JH291127       52822 272 +    111706 I
e mm10.chr16                65448038 0 -  98207768 C
e canFam3.chr33             29083026 3 +  31377067 I
e chlSab2.chr15               431369 184 -  91754291 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=873.000000
s hg38.chr3_KI270935v1_alt    144386 3 +    197351 CCT
s panTro4.chr3             199789609 3 + 202329955 CCT
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120907013 3 + 123690457 CCT
i nomLeu3.chr11            C 0 C 0
e rheMac3.chrUn_JH291127       52822 272 +    111706 I
e mm10.chr16                65448038 0 -  98207768 C
e canFam3.chr33             29083026 3 +  31377067 I
e calJac3.chr17               954512 0 -  74750902 C
e chlSab2.chr15               431369 184 -  91754291 I
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 83869 103 - 187378091 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=382.000000
s hg38.chr3_KI270935v1_alt    144389 4 +    197351 CTCT
s panTro4.chr3             199789612 4 + 202329955 CTCT
i panTro4.chr3             C 0 C 0
e rheMac3.chrUn_JH291127       52822 272 +    111706 I
e mm10.chr16                65448038 0 -  98207768 C
e canFam3.chr33             29083026 3 +  31377067 I
e calJac3.chr17               954512 0 -  74750902 C
e chlSab2.chr15               431369 184 -  91754291 I
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 83869 103 - 187378091 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907016 0 + 123690457 C

a score=4254.000000
s hg38.chr3_KI270935v1_alt    144393 164 +    197351 CTCACTCAGCAGGTGTGGACACCCTCTCTCCATCGCTCAGCAGGTGTGGACACCCTCTCTCTATTGCTCAGCAGGTGTGGACACCCTCTCGCCATCGCTCAGCAGGTGTGGACACCCTCTCTCTATCGCTCAGC-----AGGTGTGG-----ACA-CCCTCTCGCCATCGCTCAG
s calJac3.chr17               954512 146 -  74750902 ------------GTGT-------CTCTCTCCATTGCTCAGTGGGTGGAGA---TCTCTCTCTATCACTCAG--GGGGTGGA-GCTCTCTCCCCATCACTCAGGGGGTGGAG----TGTCTCTCCATCGCTCATCCCTCGGGGCGTGGGGGGTGCAGCCCTCTCTCCATCATTGAG
i calJac3.chr17            C 0 T 5
e rheMac3.chrUn_JH291127       52822 272 +    111706 I
e mm10.chr16                65448038   0 -  98207768 C
e canFam3.chr33             29083026   3 +  31377067 I
e chlSab2.chr15               431369 184 -  91754291 I
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 83869 103 - 187378091 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907016   0 + 123690457 C
e panTro4.chr3             199789616   0 + 202329955 C

a score=0.000000
s hg38.chr3_KI270935v1_alt    144557 20 +    197351 CAGGTGTGGACACCCTCTCG
e rheMac3.chrUn_JH291127       52822 272 +    111706 I
e mm10.chr16                65448038  0 -  98207768 C
e canFam3.chr33             29083026  3 +  31377067 I
e calJac3.chr17               954658  5 -  74750902 T
e chlSab2.chr15               431369 184 -  91754291 I
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 83869 103 - 187378091 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907016  0 + 123690457 C
e panTro4.chr3             199789616  0 + 202329955 C

a score=5680.000000
s hg38.chr3_KI270935v1_alt    144577 71 +    197351 CCATCGCTCAGCAGGTGTGGACACCCTCTCGCCATCGCTCAGCAGGTGTGGACACCCTCTCTCTATCGCTC
s panTro4.chr3             199789616 71 + 202329955 CTATTGCTCAGCAGGTGTAGACACCCTCTCTCCATTGCTCATCAGGTGTGGACACCCTCTGTCTATCGCTC
i panTro4.chr3             C 0 C 0
e rheMac3.chrUn_JH291127       52822 272 +    111706 I
e mm10.chr16                65448038  0 -  98207768 C
e canFam3.chr33             29083026  3 +  31377067 I
e calJac3.chr17               954658  5 -  74750902 T
e chlSab2.chr15               431369 184 -  91754291 I
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 83869 103 - 187378091 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907016  0 + 123690457 C

a score=4376.000000
s hg38.chr3_KI270935v1_alt    144648 16 +    197351 AGCAGGTGTGGACACC
s panTro4.chr3             199789687 16 + 202329955 AGCAGGTGTGGACACC
i panTro4.chr3             C 0 C 0
s papAnu2.chr2                 83972 16 - 187378091 AGCAGGTGTAGACACC
i papAnu2.chr2             I 103 C 0
e rheMac3.chrUn_JH291127       52822 272 +    111706 I
e mm10.chr16                65448038  0 -  98207768 C
e canFam3.chr33             29083026  3 +  31377067 I
e calJac3.chr17               954658  5 -  74750902 T
e chlSab2.chr15               431369 184 -  91754291 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120907016  0 + 123690457 C

a score=300.000000
s hg38.chr3_KI270935v1_alt    144664 1 +    197351 C
s panTro4.chr3             199789703 1 + 202329955 C
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120907016 1 + 123690457 C
i nomLeu3.chr11            C 0 C 0
e rheMac3.chrUn_JH291127       52822 272 +    111706 I
e mm10.chr16                65448038 0 -  98207768 C
e canFam3.chr33             29083026 3 +  31377067 I
e calJac3.chr17               954658 5 -  74750902 T
e chlSab2.chr15               431369 184 -  91754291 I
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 83988 0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=1365.000000
s hg38.chr3_KI270935v1_alt    144665 1 +    197351 T
s panTro4.chr3             199789704 1 + 202329955 T
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120907017 1 + 123690457 T
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       53094 1 +    111706 T
i rheMac3.chrUn_JH291127   I 272 C 0
s papAnu2.chr2                 83988 1 - 187378091 T
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               431553 1 -  91754291 T
i chlSab2.chr15            I 184 C 0
e mm10.chr16                65448038 0 -  98207768 C
e canFam3.chr33             29083026 3 +  31377067 I
e calJac3.chr17               954658 5 -  74750902 T
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=2100.000000
s hg38.chr3_KI270935v1_alt    144666 1 +    197351 C
s panTro4.chr3             199789705 1 + 202329955 C
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120907018 1 + 123690457 C
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       53095 1 +    111706 C
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 83989 1 - 187378091 C
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               431554 1 -  91754291 C
i chlSab2.chr15            C 0 C 0
s canFam3.chr33             29083029 1 +  31377067 C
i canFam3.chr33            I 3 C 0
e mm10.chr16                65448038 0 -  98207768 C
e calJac3.chr17               954658 5 -  74750902 T
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=10007.000000
s hg38.chr3_KI270935v1_alt    144667 7 +    197351 TCCATCG
s panTro4.chr3             199789706 7 + 202329955 TCCATCG
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120907019 7 + 123690457 TCCATCG
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       53096 7 +    111706 ACCATTG
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 83990 7 - 187378091 ACCATTG
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               431555 7 -  91754291 ACCATTG
i chlSab2.chr15            C 0 C 0
s mm10.chr16                65448038 7 -  98207768 TCCCTTA
i mm10.chr16               C 0 C 0
s canFam3.chr33             29083030 7 +  31377067 CCCATCA
i canFam3.chr33            C 0 C 0
e calJac3.chr17               954658 5 -  74750902 T
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=291845.000000
s hg38.chr3_KI270935v1_alt    144674 206 +    197351 CTCAGTCGCCCTCTCATGCTGTGTTCGGACTCAGCCTCC-------TCCCTCAGGGCCACAGGAGCCAGGACTGTCCCTCCAACTCTGCTCCAGGAGGCA--------GGGACCAGGGGGCCAGAGACGAATCCCAGAAGGTGGAAACGGCAGGAACAGTCCAGTTTCCCAAGTGTAGCTTTTTACTCCT-------GAGAAGGCCCCGCAGAAGCAGCGGTGGGC-----------CC
s panTro4.chr3             199789713 204 + 202329955 CTCAGTCGCCCTCTCATGCTGTGTTCGGACTCAACCTCC-------TCCCTCAGGGCCACAGGAGCCAGGACTGTCCCTCCAACTCTGCTCCAGGAGGCA--------GGGACCAGGGGGCCAGAGACGAATCCCAGAAGGTGGAAACGGCAGGAACAGTCCAGTTCCCCAAGAGTAGCTTTTTACTCCT-------GAGAAGGCCCCGCAGAAGCAGCGGTGGGT-------------
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120907026 200 + 123690457 CTGAGTCGCCCTCTCATGGTGTGTTCCAACTCAGCCTCC-------TCCCTGAGGGCCACAGGAGCCAGGACTGTCCTTCCAACTCCGCTCCAGGAGACA--------GGGACCAGCGGGCCAGAGACTAATCCCAGAAGGTGGAAATGG------CAGTCTGGTTTCCCAAGTGTAGCTTTTTACTCCT-------GAGAAGGCCCCGCAGAAGCAGCGGTGGGC-----------CC
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       53103 200 +    111706 CTGAGTCGCCCTCTCATGGTGCGTCC---CACAGCCTCC--------CCCTGAGGGCCGCGGGAGCCAGGACGGCCCCTCCAACTCCG-TCCAGGGGACA--------GGGACCGGGGGGCCAGAGACTAATGCCAGAACGCGGGCACGGCGGGAACAGCTCCGTTTCCCAAGCGCAGCGTTTTGCTCCG-------GGGAAGGCCGCGCAG-AGCAGCGCTGGGC-----------CC
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 83997 188 - 187378091 CTGAGTCGCCCTCTCATGGTGCGTCC---CACAGCCTCC--------CCCTGAGGGCCGCGGGAGCCAGGACGGCCCCTCCAACTCCGCTCCAGGGGA---------------CgggggggCGGTG------GCCAGAACGCGGGCACGGCGGGAACAGCTCCGTTTCCCAAGCGCAGCGTTTTGCTCCG-------GGGAAGGCCGCGCAG-AGCAGCGCTGGGC-----------CC
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               431562 187 -  91754291 CTGAGTCGCCCTCTCATGGTGCGTCC---CACAGCCTCC--------CCCTGAGGGCCGCGGGAGCCAGGACGGCCCCTCCAACTTCG-TCCAGGGGACA--------AGGACCAGGGG-------------GCCAGAACGCGGGCAGGGCGGGAACAGCTCCGTTTCCCAAGCGCAGCGTTTTGCTCCT-------GGGAAGGCCGCGCAG-AGCAGCGCTGGGC-----------CC
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               954653 214 -  74750902 TTGAGTCGCCCTCTGATGGTGTATTCCT-CTCAGCCTCC-------TCCCTGTGGGGTGCAGGAGCCAGGACTGCCCTTCCAACT--GCTCCAGGAGACA--------GAGACCCGGGGGCCAGAGACTAATCACAGAACATGGAAACGACAGGAACAGTCAAGTTTCCCAAGCTTAGCTTTTTACTCAT-------AAGAAGGCCCCGCAGAAGTAGCGGTGAGCTGGGGGCCGGGCC
i calJac3.chr17            T 5 C 0
s mm10.chr16                65448045 184 -  98207768 CTGTGCTGAGCTCTCATTGGGTGTCC---CTACTCCTGT--------CCCTGAGGGCAAGAAAAGCCAGGTTTGCTGTTCC--------------------------------CAGGGAATCAGGAAGTAACCCAGGGAAATAGAAATGGCGAGAACCAATCAAGTTTCTAAGCTTAGCTTCTTCCTCAGTTTAAAAAAAAAAAATCTGTGA-AGCAGCCAGGATC-----------CC
i mm10.chr16               C 0 I 67
s canFam3.chr33             29083037 218 +  31377067 CGGTGTTGCCCTACCTTAGGGTGTCCTGCCTCAGCCCGCCACCCCGCCCCTGAGGGCTGCAGGGGCCATGGCTGCCATTCCAACTCTCCTCCAGGAGACGCGGCTACTTGGCCTGAGGAACCAGGAAACATTCATAGAAAATGTACACAGCATTAAAAGG-CAGTTTCCCAAATAGAGCTTTCTCCTCAT-------AAAAAGGCCCTGAA--AATAGTGGAGAGC-----------TT
i canFam3.chr33            C 0 C 0
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=56190.000000
s hg38.chr3_KI270935v1_alt    144880 49 +    197351 AGCAGGTGGGCAGCCCTCGCCTGGCACCCTGTGTTCCTCAGGCAGAGGC
s panTro4.chr3             199789917 43 + 202329955 ------TGGGCAGCCCTCGCCTGGCACCCGGTGTTCCTCAGGCAGAGGC
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120907226 49 + 123690457 AGCAGGTGGGCAGCCCTCGCCTGGCACCCGGTGTTCCTCGGGCAGAGGC
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       53303 47 +    111706 AGCAGGC-GTCCGCCCTCGCCTGGCGCCCCGTGTTCCTC-GGCAGACGC
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 84185 47 - 187378091 AGCAGGC-GTCCGCCCTCGCCTGGCGCCCCGTGTTCCTC-GGCAGAGGC
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               431749 47 -  91754291 AGCAGGC-GTCCGCCCTCGCCTGGCGCCCCGTGTTCCTC-GGCAGACGC
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               954867 49 -  74750902 TGCAGGTGGGCAGCCTTCGCCTGGCTCCCCGTGTTACTCGGCCAGAGGC
i calJac3.chr17            C 0 C 0
s canFam3.chr33             29083255 30 +  31377067 -------------------ACTGGACCCCGAGACCTCTATAGTAAGGTA
i canFam3.chr33            C 0 C 0
e mm10.chr16                65448229 67 -  98207768 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=529050.000000
s hg38.chr3_KI270935v1_alt    144929 295 +    197351 CTGACAT-TAAGGAGGCTG----TGGGGATGGACG-----AGGGGCCCAGCCAAG---------GCTGCTTCCATTCCCGCTTCCTCTGGGTT------------------CCGTCTCGAAG--CAGGAGAGAGAAGT-GGGCC--------CTGGGAGTTCAGGCTGCGC------------GGGCCGCAGCC-CGGACTCACGTAGAGGGAATCACGGAGAGAGGAGCCAAGGGGGAAGCCAGTCGCCGGCTTGAAGAGTGGGGAGGTGAAGTCCACGGTCCTCCTGACGAACTCCAGGTCCCCGGCGTCTGCCCCATAGGGGAAGAGGGAAACTCCTGGGC---CAGGACAGAGAA
s panTro4.chr3             199789960 295 + 202329955 CTGACAT-TAAGGAGGCTG----CGGGGGTGGACG-----AGGGGCCCAGCCAAG---------GCTGCTTCCATTCCCTCTGCCTCTGGGTT------------------CCATCTCGAAG--CAGGAGAGAGAAGT-GGGCC--------CGGGGAGTTCAGGCTGCGC------------GGGCCGCAGCC-CGGACTCACGTAGAGGGAATCACGGAGAGAGGAGCCAAGGGGGAAGCCTGTCGCCGGCTTGAAGAGTGGGGAGGTGAAGTCCACGGTCCTCCTGACGAACTTCAGGTCCCCGGCGCCTGCCCCATAGGGGAAGAGGGAAACTCCTGGGC---CAGGACAGAGAA
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120907275 280 + 123690457 CTGACAT-TAAGGAGGCTG----TGGGGGTGGACG-----AGGGGCCCAGCCAAG---------GCTGCTTCCACTCCCGCTTCCTCTGGGTT------------------CCATCTCCAAG--CTGGAGAGAGAAGT-GGGCC--------CAGGGAGCTCAGGCCGCAT------------AGGCCGCAGCC-CAGACTCACGTAGAGGGAATCACGGAGAGAGGAGCCGAGGGGGAAGCCAGTCGCTGGCTTGAAGAGTGGGGAGGTGAAGTCCACAGTCCTCCTGACGAACTCCAGGTCCCCGGTGCCTGCCCCGTAGGGGAAGAGGGAAACTCC------------------AA
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       53350 281 +    111706 CTGACAT-TAAGGGGGCTG----TGGGG-CGCACG-----AGGGGCCCCGCCGAG---------GCTGCCTCCACTCCTGCTTCCTCTGGGTT--------------------GTCTCGGAG--CTGGGGAGAGAAGC--GGCC--------CAGGGAGCCGA---------------------GGCCGCCGCC-GGGACTCACGTAGAGGGAATCGCGGAGCGAGGAGCCGAGGGGGAAGCCAGTCGCGGGCCTGAAGAGCGGGGAGGTGAAGTCCACGGTCCTCCTGACGAACTCCAGGTCCCCGGCGCCGACCCCGTAGGGGAGGAGGGAAGCTCCT-GGC---CAGGACAAAGAC
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 84232 281 - 187378091 CTGACAT-TAAGGGGGCTG----TGGGG-CGCACG-----AGGGGCCCCGCCGAG---------GCTGCCTCCACTCCTGCTTCCTCTGGGTT--------------------GTCTCGAGG--CTGGGGAGAGAAGC--GGCC--------CAGGGAGCTGA---------------------GGCCGCCGCC-GGGACTCACGTAGAGGGAATCGCGGAGCGAGGAGCCGAGGGGGAAGCCAGTCGCGGGCCTGAAGAGCGGGGAGGTGAAGTCCACGGTCCTCCTGACGAACTCCAGGTCCCCGGCGCCGGCCCCGTAGGGGAGGAGGGAAGCTCCT-GGC---CAGGACAAAGAC
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               431796 281 -  91754291 CTGACAT-TAAGGGGGCTG----TGGGG-CGCACG-----AGGGGCCCCGCCGAG---------GCTGCTTCCTCTCCTGCTTCCTCTGGGTG--------------------GTCTCGAAG--CCGGGGAGAGAAGC--GGCC--------CAGGGAGCTGA---------------------GGCCGCCGCC-GGGACTCACGTAGAGGGAATCGCGCAGCGAGGAGCCGAGGGGGAAGCCAGTCGCGGGCCTGAAGGGCGGGGAGGTGAAGTCCACGGTCCTCCTGACGAACTCCAGGTCCCCGGCACCGGCCCCGTAGGGGAGGAGGGAAGCTCCT-GGC---CAGGACAAAGAA
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               954916 295 -  74750902 CTGACAG-TAAGAAGGCTG----TGGAGGTGAACGAAACTAGAGGCCCAGCCAAG---------GCTGCTTCCACTCCCAGTTC--CTGGGTT------------------CCATCCTGAAG--CTGGAGAGAGAAGC-GGGCC--------CAGGGAGCTCAGGCTGTGC-------------GGCCTCAGT---GAACTCACATAGAGAGAATCCCGGAGAGAAGAGCCGAGGGGAAAGCCAGTCAGGGGCTTGAAGAGTGGGGAGGTGAAGTCCACAGTCCTCCTGACGAACTCCAGGTCCCCAGCGCCCGACCCGTAGGGGAGGAGGGAAACTCCTGGGC---CAGGACAAAGAA
i calJac3.chr17            C 0 C 0
s mm10.chr16                65448296 306 -  98207768 CTGACATAAAAGAAGGCTA----------CAAAAG-----TGTTGTACAGCAAAG-----------TGACCTCATTCTTTCTTCTGCTCTGTCAT-------------GGGCCATCT-------CTGCAGAGAAACAG--GGCCCAAAAGAACAAAGAACACAGGCCACAGACATGACCC--AAGGCTACAGTCAGAGACTCACGTAGAAGGAATCCCGCAGGGAGGAACCGAGGGGAAAGCCAATCAGGATCTTGAAGATTGGTGAGTTAAAATCCACAGTCCTGGCAAACAAATTCTGGTCTCCGACTTCAGACCCGTAGGGGAAGAGGGAAATGCCTAGAC---AAGGACAGAGGA
i mm10.chr16               I 67 C 0
s canFam3.chr33             29083285 334 +  31377067 ---------AAGACACTTGTCCCTGAGGGTA---G-----GAGGGCCTTGCCTAGCTCCCAGTTGCTTGTCGCACACTTCCTTCCTCTGGGCCATGGTCATGGTCACAGGGCCATCGTCAAGCCCTAGAGAGAGAAGTAGAGTC--------TGGGAAGCACAGGTCACAGGTCCTGCCCTTTGGTCTACACCTGGGGACTCACATAGAGGTAATCCCGGAGAGAGGAGCCAAGAAGGAAGCCAATCTGGGGCCTGAAGAGTGGTGAGGTGAAGTCCGTGGTCCTCTCGACAAACTCCCTGTCTCCAACACTTGGCCCGTAAGGGAAGAGGGAAACGCCTGGGCCAGCAGGACAAAGGA
i canFam3.chr33            C 0 C 0
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=352843.000000
s hg38.chr3_KI270935v1_alt    145224 231 +    197351 GAGCAGGAAGTCCAAGTGGGCCTGGGCCTTCTTTAGGGCTGAAAGGGATCCCAGAGCGCTCCCCGCAGGCTG-CCCACACCTGTCCTGTGTTCCCCGAGGGCCCCAGAGG----------CAGCCATCTAGG-----GTGCTTCTCGCTCCCTCTCCACCCACATTAAATGCATGTGGTCATTTTACTCCCTAAACTGCGCCTCTCATCCTTCCCCAGCTTGGAGAA---AAACAG----GTCCTGCTGTCAGA
s panTro4.chr3             199790255 231 + 202329955 GAGCAGGAAGTCCAAGTGGGCCTGGGCCTTCTTTAGGGCTGAAAGGGATCCCAGATCGCTCCCCGCAGGCTG-CCCACACCTGTCCCGTGTTCCCCGAGGGCCCCAGAGG----------CAGCCATCGAGG-----GTTCTTCTTACTCCCTCTCCACCCACATTGAATGCATGTGGTCATTTTACTCCCTAAACTGCGCCTCTCATCCTTCCCCAGCTTGGAGAA---AAACAG----GTTCTGAAATAAAA
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120907555 231 + 123690457 GAGCAGGAAGCCCAAGTGGGCCTGGGCCTGCTTTAGGGCTGAAAGGGATCCCAGAGTGCTCCCCGCACACTG-CCCGCACCTGTCCCCTGTTCCCCGAGGGCCCCAGAGG----------CAGCCATCGAGG-----GTTCTTGTTGCTCCCTCTCCACCCACACTGAATGCATGTGGTCATTTTACTCCCTAAACTGCGCCTCTCATCCTTCCCCAGCTTGGAGAA---AAACAG----GTCCTGCTGTCAGA
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       53631 228 +    111706 GAGCAGGACGTCCGAGGGGGCCTGGGCCTTCTTTAGGGCCGAAAGGGATCCCAGAGCCCTCCCCGCGCGCTG-CGCGCACCTGCCCC--GTTCCCCGAGGGCCCCAGAGG----------CAGCCAGCAAGG-----GCTCTTGTGGCTCCCTCTCCACCCACACTGAACGCATGTGGTCATTTTACTCCC-GAACTGCGCCTCTCATCCTTCCCCAGCTCGGAGGA---AAACAG----GTCCTGCTGGCAGA
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 84513 228 - 187378091 GAGCAGGACGTCCGAGGGGGCCCGGGCCTTCTTTAGGGCCGAAAGGGATCCCAGAGCGCTCCCCGCGCGCTG-CGCGCACCTGCCCC--GTTCCCCGAGGGCCCCAGAGG----------CAGCCAGCAAGG-----GCTCTTGTGGCTCCCTCTCCACCCACACCGAACGCATGGGGTCATTTTACTCCC-GAGCTGCGCCTCTCATCCTTCCCCAGCTCGGAGAA---AAACAG----GTCCTGCTGGCAGA
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               432077 227 -  91754291 GAGCAGGACGTCCGAGGGGGCCTGGGCCTTCTTTAGGGCCGAAAGGGATCCCAGAGCGCTCCCCGCGCGCTG-CGCGCACCTGCCCC--GTT-CCCGAGGGCCCCAGAGG----------CAGCCAGCAAGG-----GCTCTTGTGGCTCCCTCTCCACCCACACCGAACGCATGTGGTCATTTCACTCCC-GAACTGCGCCTCTCATCCTTCCCCAGCTCGGAGGA---AAACAG----GTCCTGCTGGCAGA
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               955211 225 -  74750902 GAGCAGGACGTCCAAGTGGGCCT------------GGGCTGGAAGGGATCCCAGAGACCCCCCCAC--GCTGCCCCGCACCTGCCCTCTCCACCCCGATGGCCCCAGAGGCCCTGCCAGCCAGCCATCCAGG-----GTTCTT---GCTCCCTCTCCACCCGCGTTGAGCGCACGCCGTCATTTTACTCCCTACACTGTGCCTGGCATCCTTCCCCAGCTTGGAGAA---AAACAG----GTCCTGCTGTCAGA
i calJac3.chr17            C 0 I 20
s mm10.chr16                65448602 207 -  98207768 GAGAGCAGAGTCCTTGAGGGTCATCCCTCCTTTCAGGTTCAGGAGGACCCTGAGAGAGCTTC-----------CCCTAACCTGTCTCCTCTT-----------TCAGAAG----------CAACTCCCGTAGACCTTACTCTTCGTTCCACCTCTCCATACACA--------------TCTGTTTACTTCT-CAGCTGGAACCCTCATCATCCCTCAGGTTAGAGCATCCTGACATGACCGTCCTGCTGTTAGG
i mm10.chr16               C 0 C 0
e canFam3.chr33             29083619   0 +  31377067 C
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=22005.000000
s hg38.chr3_KI270935v1_alt    145455 15 +    197351 ATACCAGCAAACGAT
s panTro4.chr3             199790486 15 + 202329955 ATACCAGCAAACGAT
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120907786 15 + 123690457 ATACCAGCAACCGAT
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       53859 15 +    111706 ATACCAGCAAACGAT
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 84741 15 - 187378091 ATACCCGCAAACGAT
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               432304 15 -  91754291 ATACCAGCAAACGAT
i chlSab2.chr15            C 0 C 0
s mm10.chr16                65448809 15 -  98207768 ATAGCACCATAGGAT
i mm10.chr16               C 0 I 24
e canFam3.chr33             29083619  0 +  31377067 C
e calJac3.chr17               955436 20 -  74750902 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=220839.000000
s hg38.chr3_KI270935v1_alt    145470 200 +    197351 TCTCAATCTCTTAGT----CTCAATCCTTTTCAGGGTTAAAAGACAAAAGTCTATgctgggtgcggtggctcacgcctgtaatcccagcac-tttgggaggctgaggcgggaggatcacgaggtcaggagttcgagaccagcctgaccaacatggagaagccctgtctctacttaaaatacaaaaattagccgggtgtggtggcg
s panTro4.chr3             199790501 200 + 202329955 TCTCAATCTCTTAGT----CCCAGTCCTTTTCAAGGTTAAAAGACAAAAGTCCATgctgggtgcagtggctcacgcctgtaatcccagcac-tttgagaggatgaagcaggaggatcacgaggtcaggagttcgagaccagcctgaccaaaatggagaagccctgtctctacttaaaatacaaaaattagccgagtgtggtggcg
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120907801 202 + 123690457 TCTCAATCTCTTAGT--ACCCCAATCCTTTTCAGGGTTAAAAGACAAAAGCCCATgccgggcgcggtggctcacgcctgtaatctcagcac-tttgggaggctgaggcaggaggatcatgaggtcaggagttcgagaccagcctgaccaacatggagaagccctgtctctacttaaaatacaaaaattagccgggcgtggtggcg
i nomLeu3.chr11            C 0 I 3
s rheMac3.chrUn_JH291127       53874 205 +    111706 TCGCCATCTCTTAGGTAGTCCCAATCCTTTTCAGGGTTAAATGACAAACGTCCATGAcggacgcggtggctctcgcctgtaatcccagaacttttggtaggccgaggcgggtggatcacgaggtcaggagttcgagaccagcctgaccaagatggagaaacctcgtctctactaaaaatacaaaaactagcctggtgtggtggtg
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 84756 183 - 187378091 TCGCCATGTCTTAGGTAGTCCCAATCCTTTTCAGGGTTAAAtg---------------------ggtggctctcgcctgtaatcccagaac-tttgggaggccgaggcgggtggatcacgaggtcaggagttcgagaccagcctgaccaacatggagaaacctcgtctctactaaaaatacaaaaactagcctggtgtggtggcg
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               432319 204 -  91754291 TCGCCATCTTTTAGGTAGCCCCGATCCTTTTCAGGGTTAAATGACAAACGTCCATGGcggacgcggtggctctcgcctgtaatcccagaac-tttgggaggccgaggcgggtggatcacgaggtcaggagttcgagaccagcctgaccaacatggagaaacttcgtctctactaaaaatacaaaaattagccaggcgtggtggcg
i chlSab2.chr15            C 0 I 132
e mm10.chr16                65448824  24 -  98207768 I
e canFam3.chr33             29083619   0 +  31377067 C
e calJac3.chr17               955436  20 -  74750902 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=-282.000000
s hg38.chr3_KI270935v1_alt    145670 1 +    197351 c
s panTro4.chr3             199790701 1 + 202329955 c
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120908006 1 + 123690457 t
i nomLeu3.chr11            I 3 C 0
s rheMac3.chrUn_JH291127       54079 1 +    111706 g
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 84939 1 - 187378091 c
i papAnu2.chr2             C 0 C 0
e mm10.chr16                65448824 24 -  98207768 I
e canFam3.chr33             29083619 0 +  31377067 C
e calJac3.chr17               955436 20 -  74750902 I
e chlSab2.chr15               432523 132 -  91754291 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=85558.000000
s hg38.chr3_KI270935v1_alt    145671 68 +    197351 atgcctgtaatcccagccactcgggaggctgaggcaggagaattgcttgaacccgggaggctgaggtt
s panTro4.chr3             199790702 68 + 202329955 atgcctgtaatcccagccactcgggaggcagaggcaggagaatcgcttgaacccgggaggctgaggtt
i panTro4.chr3             C 0 M 696
s nomLeu3.chr11            120908007 68 + 123690457 tcgcctgtaatcccagctactccggaggctgaggcaggagaattgcttgaacccaggaggcggaggtt
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       54080 68 +    111706 acgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccgggaggtggaggtt
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 84940 68 - 187378091 atgcctgtaatcccagctactcgggaggctgaggcaggagaatctcttgaacccgggaggtggaggtt
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               432655 68 -  91754291 gcgcctgtaatctcagctactcgggaggctgaggcaggagaatctcttgaacccgggaggtggaggtt
i chlSab2.chr15            I 132 C 0
e mm10.chr16                65448824 24 -  98207768 I
e canFam3.chr33             29083619  0 +  31377067 C
e calJac3.chr17               955436 20 -  74750902 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=43416.000000
s hg38.chr3_KI270935v1_alt    145739 71 +    197351 ccagtgagctgagatcgcgccactgcactccagcctgggcaacaagagcgaaaactccatctcaaaaaaaa
s nomLeu3.chr11            120908075 71 + 123690457 ccagtgagctgagatcgcgccattgcactccagtctgggcaacaagaacggaaactccgtctcaaaaaaaa
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       54148 67 +    111706 tcagtgagccaagattgctccactgcaccccagcctgggcgacaagagc-aaccctccgtttc---aaaaa
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 85008 65 - 187378091 tcagtgagccaagattgctccactgcactccagcctgggcgacaagagc-aaccctccgtttc-----aaa
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               432723 62 -  91754291 tcagtgagccaagattgctccactgcactccagcctgggcgacaagagc-aaccctccgtttc--------
i chlSab2.chr15            C 0 C 0
e mm10.chr16                65448824 24 -  98207768 I
e canFam3.chr33             29083619  0 +  31377067 C
e calJac3.chr17               955436 20 -  74750902 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e panTro4.chr3             199790770 696 + 202329955 M

a score=13649.000000
s hg38.chr3_KI270935v1_alt    145810 17 +    197351 aaaaaaaaaa-tagacaa
s nomLeu3.chr11            120908146 18 + 123690457 aaaaaaaaaagaagacaa
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       54215 17 +    111706 aaaaaaaaaa-atgacaa
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 85073 17 - 187378091 aaaaaaaaaa-atgacaa
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               432785 16 -  91754291 -aaaaaaaaa-atgacaa
i chlSab2.chr15            C 0 C 0
s mm10.chr16                65448848 17 -  98207768 AAAGGGCGAA-AAGACGA
i mm10.chr16               I 24 C 0
e canFam3.chr33             29083619  0 +  31377067 C
e calJac3.chr17               955436 20 -  74750902 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e panTro4.chr3             199790770 696 + 202329955 M

a score=84335.000000
s hg38.chr3_KI270935v1_alt    145827 63 +    197351 aaGTCCAGCGCAATGAAGATGAGTAACTGCAAAGCCCTTTTCAGGGAATGAGACTTGTTTCCT
s nomLeu3.chr11            120908164 63 + 123690457 aaGTGCAGCGCAATGAAGATGAGCAACTGCAAAGCCCTTTTCAGGGAATGAGACTTGTTTCCT
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       54232 63 +    111706 aaGTCCAGTGCAGTGAAGATTCGTGACTGCAGAGCCCTTTTCAGGGAATGAGACTTGCTTCCT
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 85090 63 - 187378091 aagtccAGTGCAGTGAAGATTCGTGACTGCAGAACCCTTTTCAGGGAATAAGACTTGCTTCCT
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               432801 63 -  91754291 aaGTCCAGTGCAGTGAAGATTCGTGACTGCAGAGCCCTTTTCAGGGAATGAGACTTGCTTCCT
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               955456 62 -  74750902 AAGCCCAACACAGTGAAGATGAGAAACTGCA-AGTCCTTTTCAGGAAACGAGACTTGTTTCCT
i calJac3.chr17            I 20 C 0
s mm10.chr16                65448865 62 -  98207768 AACTCCAAAACAGCAAAGACTAGTCACT-TAAAGACCTTTTCATAAAATGACACCTATTTCCT
i mm10.chr16               C 0 C 0
e canFam3.chr33             29083619  0 +  31377067 C
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e panTro4.chr3             199790770 696 + 202329955 M

a score=337337.000000
s hg38.chr3_KI270935v1_alt    145890 266 +    197351 AAGACGGCCTTTCTCCAGATAAACTTGAAGAC----------TCCTCCAATTTAACCTAGGACTCCCTAGAGGCCCTCGGGCTCCAGTGTGAGAAACCTTGTCCCAAATATTTCTCGCAGCTGCCGACTC--------CTTGGCGCCCTCCCCTGGTCCTGCTTGGA---------AACCCGCAG-GCTCTCCTGGCCTCCTCACTG------------------CCTGCAAATCGGAC---CGCTCCAGGCACCACTTGTTAAATGCCATTTGTACAATGCAAAACTGAGTCCTCCCTGGCTCCCGTTGCCTAC
s nomLeu3.chr11            120908227 265 + 123690457 AA-CTGGCCTTTCTCCAGATAAACTTGAGGAC----------TCCTCGAATTTAACCTATAACTCCCTAGAGGTCCTCGGGCTCCAGTTTGAGAAACCTTGTCCCAAATATTTCTCCCAGCTGCCGACTC--------CTTGGCACCCTCCCCTGGTCCTGCTTGGA---------ATCCTGCAG-GCTCTCCTGGCCTCCTCACTG------------------CCTGCAAATCTCAC---CACTCCAGGCACCACTTGTTAAATGCCATTTGTACAATGCAACACTGAGTCCTCCCAGGCTCCCCTTACCTAC
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       54295 264 +    111706 AAGATGGCCTTTCTCCGGTTAAACGTGAAGAC----------TCCTCGAATTTAACCTAGGACTCCCTAGAGGTTCTTGGGCTCCGGTTTGAGAAACCTGGTCCCAAATATTTCTCGCAGCTGCCGACTC--------CTTGGGGCCCTCCCCTGGTCCTGCTTGGA---------ATCCTGTAG-GCTCTCCTGGCCTCGTCGCTG------------------CCTGCACATCTGGC---CGCTGCAGGCACCACTTGTTAAATGCCATTTGTACAATGCAAAAC--AGTCCTCCCTGGCTCTCCTTACCTAC
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 85153 264 - 187378091 AAGATGGCCTTTCTCCGGTTAAACTTGAAGAC----------TCCTCGAATTTAACCTAGGACTCCCTAGAGGTTCTTGGGCTCCGGTTTGAGAAACCTTGTCCCAAATATTTCTCGCAGCTGCCGACTC--------CTTGGGGCCCTCCCCTGGTCCTGCTTGGA---------ATCCCGTAG-GCTCTCCTGGACTCGTCGCTG------------------ACTGCACATCTGGC---CGCTGCAGGCACCACTTGTTAAATGCCATTTGTACAATGCAAAAC--AGTCCTCCCTGGCTCTCCTTACCTAC
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               432864 264 -  91754291 AAGACGGCCTTTCTCCGGTTAAACTTGAAGAC----------TCCTCGAATTTAACCTAGGACTCCCTAGAGGTTCTTGGGCTCGGGTTTGAGAAACCTTGTCCCAAATATTTCTCGCAGCTGCCGACTC--------CTTGGGGCCCTCCCCTGGTCCTGCTTGGA---------ATCCCGTAG-GCTCTCCTGGCCTGGTCGCTG------------------CCTGCACATCTGGC---CACTGCAGGCACCACTTGTTAAATGCCATTTGTACAATGCAAAAC--AGTCCTCCCTGGCTCTCCTTACCTAC
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               955518 252 -  74750902 AAGATGGCATTTCTCCAGAGAAACTTAAAGAC-----------CCTCGAATTTAGCCTAGGCCGCCCTAGAGGTCCTTAGGCTCCAGTTTGAGAAACCCTGTCCCAAACAATTCTCACAGCTGCTGACTC--------CTTGGCGCCCTCCCCTGGTCCTGCCTGGA---------ATCCCGCAG-GCTTTCCTGGCCTCCTCAC--------------------CCTGCAAATCTGAC---CACTCCAGCCACA-------GGGTGCCATTTGTAAAATGCAGG----AGTCCTCCCTGGCGCTCCTTACCTCC
i calJac3.chr17            C 0 C 0
s mm10.chr16                65448927 270 -  98207768 ACAGCGGTACTTCTTCAGATAAACTTGAAGACACTCCCACCCACCCCGGAATTGCCCAAGGCCACCCTGTATGTCCTCAGATTCCAGTTTGGGAAACTATGTCTTAAGTGTTTCCCACATGGATCTAACT--------CTATATATACT-ACATGGCCTTGATTGGC---------TTAGCACAG---TCTCTTGGCTTCCTCACTGATGCCTCCCTCGATTGACCATCCAGGTTTATC---CATACCAGCCACCACT--------------------GTGCAGATCTGTATCCTCCCTGATTC-CCTTACCCAC
i mm10.chr16               C 0 I 1915
s canFam3.chr33             29083619 264 +  31377067 AAGTCGGTATTTGTCCAGATACACGGGTAGATACCCCTCCCCCGCCCGAATTTGTCCTTGGACCCCTCAGATGTCCTTGGGTTCTAGCTTGAGAAAGCTTGTCTTAAATATTTCTCAAACGAGTCTCCCCCTTTCGTTCTTGGCAGCCCTCCCTGTT--GGCCTGGATACCACCGCATCTCATAGGGCCCACTCGGCCT--------------------------CCTGGAAATTCACCCAACACCCCACCCACCACG---------------GCACCATCCAAGTATAAACCTGGCCGGGTCCTAC--------
i canFam3.chr33            C 0 C 0
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e panTro4.chr3             199790770 696 + 202329955 M

a score=114542.000000
s hg38.chr3_KI270935v1_alt    146156 93 +    197351 -----AGGATTCCCCGCATGCCGGCCGCACTTTTTGCTACCCTTCTTCTCATTTTCAGCCACCCCAAATGCTTCGGGGATCCACTCCCCATGCAGCAC
s nomLeu3.chr11            120908492 93 + 123690457 -----AGGGTGCCCCGCATGCCGGCCGCACTTTTTGCTACCCTTCTTTTCATTTCGAGCCACCCCAAATGCTTCGGGGATCTGCTCCCCATGCAGCAC
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       54559 89 +    111706 -----AGGATT----GCATGCTGGCCGCACTTTTTGCTCCTCTTGTTCTCATTTTCAGCCACCCCAAATGATTCGGGGATCCGCTCCCCATGCAGCAC
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 85417 89 - 187378091 -----AGGATT----GCATGCTGGCCGCACTTTTTGCTCCTCTTGTTCTCATTTTCAGCCACCCCAAATGATTCGGGGATCCACTCCCCATGCAGCAC
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               433128 89 -  91754291 -----AGGATT----GCATGCTGGCCGCACTTTTTGCTCCTCTTGTTCTCATTTTCAGCCACCCCAAATGATTCGGGGATCCACTCCCCATGCAGCAC
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               955770 90 -  74750902 -----AGGATT-CCCGCATGCCAGCCGCAC--TTTGCTCCTCTTCTTCTCATTTTCAGCAACCCCAAATGCTTTGGGGCTCCCCTCCCCATGCAGGAC
i calJac3.chr17            C 0 I 3
s canFam3.chr33             29083883 92 +  31377067 CTGATTGTATC----ACATGACGGCCTCATTCTCAAC-ATTCTTCACCTGGTTTCCA-CACCCCCAAGTGTCTTGGGGGTCTCCTCCCCATGCAATAC
i canFam3.chr33            C 0 C 0
e mm10.chr16                65449197 1915 -  98207768 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e panTro4.chr3             199790770 696 + 202329955 M

a score=6525.000000
s hg38.chr3_KI270935v1_alt    146249 10 +    197351 CGGGACGACT
s nomLeu3.chr11            120908585 10 + 123690457 CGAGACGATT
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       54648 10 +    111706 CGGGTCCACT
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 85506 10 - 187378091 GGGGTCCACT
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               433217 10 -  91754291 CGGGTCCACT
i chlSab2.chr15            C 0 C 0
s canFam3.chr33             29083975 10 +  31377067 TGGGACTCCT
i canFam3.chr33            C 0 C 0
e mm10.chr16                65449197 1915 -  98207768 I
e calJac3.chr17               955860  3 -  74750902 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e panTro4.chr3             199790770 696 + 202329955 M

a score=4566.000000
s hg38.chr3_KI270935v1_alt    146259 16 +    197351 TTCTGCAGCCATACCT
s nomLeu3.chr11            120908595 16 + 123690457 TTCTGCAGCCATACTT
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       54658 16 +    111706 TTCCACCGCCATACCT
i rheMac3.chrUn_JH291127   C 0 I 40
s canFam3.chr33             29083985 16 +  31377067 TTTCATGTCTACACTT
i canFam3.chr33            C 0 I 17
e mm10.chr16                65449197 1915 -  98207768 I
e calJac3.chr17               955860  3 -  74750902 I
e chlSab2.chr15               433227  0 -  91754291 C
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 85516  0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M
e panTro4.chr3             199790770 696 + 202329955 M

a score=4840.000000
s hg38.chr3_KI270935v1_alt    146275 53 +    197351 ACCACACTCGTACCTTCCACGGCCATACCTTCCACACCCATACCTTCCACAGT
s nomLeu3.chr11            120908611 53 + 123690457 ACCACACTCGTACCTTCCACGGCCATACCTTCCACACCCATACCTTCCACGGC
i nomLeu3.chr11            C 0 C 0
e rheMac3.chrUn_JH291127       54674 40 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29084001 17 +  31377067 I
e calJac3.chr17               955860  3 -  74750902 I
e chlSab2.chr15               433227  0 -  91754291 C
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 85516  0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M
e panTro4.chr3             199790770 696 + 202329955 M

a score=28766.000000
s hg38.chr3_KI270935v1_alt    146328 142 +    197351 CATACCTTCCACACCCATACCTTCCACACCCATACCTTCCACGCCCATA-CCTTCCACACCCATACCTTCCACACCCATACCTTCCACAGTCATACCTTCCACGGCCATACCTTCCAC-ACCCATACCTTCCACACCCATACCT
s panTro4.chr3             199791466 142 + 202329955 CATACCTTC-ACACCCATACCTTCCACATCCATACCTTCCACGTGCGGAGCCTTCCACATCCATACCTTCCACACCCATACGTTCCACAcccataccttccacatccataccttccac-acccttaccttccacacccatacct
i panTro4.chr3             M 696 C 0
s nomLeu3.chr11            120908664 143 + 123690457 CATACCTTCCACACCCATACCTTCCACGGCCATACCTTCCACGGACATA-CCTTCCACGGCCATACCTTCCACACCCATACCTTCCACGGCCATACCTTCCACGGACATACCTTTCACGGGCCGTACCTTCGACGGGCATATCT
i nomLeu3.chr11            C 0 C 0
e rheMac3.chrUn_JH291127       54674  40 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29084001  17 +  31377067 I
e calJac3.chr17               955860   3 -  74750902 I
e chlSab2.chr15               433227   0 -  91754291 C
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 85516   0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=72739.000000
s hg38.chr3_KI270935v1_alt    146470 904 +    197351 TCCACACCCATACCTTCCACGCCCATACCTTCCACACCCATACCTTCCACGGCCATACCTTCCACACCCATACCTTCCACAGTCATACCTTCCACACCCATACCTTCCACACCCATACCTTCCACACCCATACCTTCCACGCCCATACCTTCCACGGCCATACCTTCCACAGTCATACCTTCCACACCCATACCTTCCACACCCATACCTTCCACACCCATACCTTCCACGGCCATACCTTCCACACCCATACCTTCCACAGTCATACCTTCCACACCCATACCTTCCACACCCATACCTTCCACACCCATACCTTCCACGGCCATACCTTCCACACCCATACCTTCCACAGTCATACCTTCCACACCCATACCTTCCACACCCATACCTTCCACGCCCATACCTTCCACACCCATACCTTCCACAGTCATACCTTCCACAGTCATACCTTCCACACCCATACCTTCCACAGTCATACCTTCCACACCCATACCTTCCACAGTCATACCTTCCACAGTCATACCTTCCACAGTCATACCTTCCACGCCCATACCTTCCACAGTCATACCTTCCACACCCATACCTTCCACAGTCATACCTTCCACAGTCATACCTTCCACGCCCATACCTTCCACAGTCATACCTTCCACACCCATACCTTCCACAGTCATACCTTCCACAGTCATACCTTCCACAGTCATACCTTCCACACCCATACCTTCCACAGTCATACCTTCCACACCCATACCTTCCACAGTCATACCTTCCACAGTCATACCTTCCACACCCATACCTTCCACAGTCATACCTTCCACACCCATACCTTCCACAGTCATACCTTCCACAGTCATACCTTCCACACCCATACCTTCCACACCCATACCTTCCACACCCATACCTTCCA
s panTro4.chr3             199791608 904 + 202329955 tccacacccataccttccacactcataccttccacactcataccttccacactcataccttccacacccataccttccacacccataccttccacacccataccttccACGGCCATACCTTCCACACTCATAccttccacacccataccttccacacccttaccttccacacccataccttccacatccataccttccacacccttaccttccacacccataccttccacacccataccttccacacccataccttccacacccataccttccacactcataccttccacactcataccttccacactcataccttccacacccataccttccacacccataccttccacatccataccttccacggccataccttccacacccataccttccacacccataccttccacatccataccttccacacccttaccttccacacccataccttccacacccataccttccacacccataccttccacactcataccttccacacccataccttccacactcataccttccacacgcataccttccacacccataccttccacacccataccttccacacccataccttccacacccataccttccacacccataccttccacacccataccttccacacccataccttccacacccataccttccacacccataccttccacacccttaccttccacacccataccttccacacccataccttccacacccataccttccacactcataccttccacactcataccttccacacccataccttccacagccataccttccacacccataccttccacacccataccttccacacccataccttccacacccttaccttccacacccataccttccacacccttaccgtccacacccataccttccA
i panTro4.chr3             C 0 M 1364
e rheMac3.chrUn_JH291127       54674  40 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29084001  17 +  31377067 I
e calJac3.chr17               955860   3 -  74750902 I
e chlSab2.chr15               433227   0 -  91754291 C
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 85516   0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120908807   0 + 123690457 C

a score=0.000000
s hg38.chr3_KI270935v1_alt    147374 325 +    197351 CAGTCATACCTTCCACGCCCATACCTTCCACAGTCATACCTTCCACACCCTTACCTTCCACAGTCATACCTTCCACGGCCATACCTTCCACACCCTTACCTTCCACACCCATACCTTCCACACCCATACCTTCCACACCCATACCTTCCACAGTCATACCTTCCACACCCATACCTTCCACAGTCATACCTTCCACACCCATACCTTCCACACCCATACCTTCCACAGTCATACCTTCCACACCCATACCTTCCACAGTCATACCTTCCACACCCATACCTTCCACACCCATACCTTCCACACCCATACCTTCCACGGCCATACC
e rheMac3.chrUn_JH291127       54674  40 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29084001  17 +  31377067 I
e calJac3.chr17               955860   3 -  74750902 I
e chlSab2.chr15               433227   0 -  91754291 C
e macFas5.chr2                 83084 14732 + 192460366 M
e papAnu2.chr2                 85516   0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120908807   0 + 123690457 C
e panTro4.chr3             199792512 1364 + 202329955 M

a score=1345.000000
s hg38.chr3_KI270935v1_alt    147699 8 +    197351 TTCCACAC
s papAnu2.chr2                 85516 8 - 187378091 TTCCATGG
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               433227 8 -  91754291 TTCCACGG
i chlSab2.chr15            C 0 C 0
e rheMac3.chrUn_JH291127       54674 40 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29084001 17 +  31377067 I
e calJac3.chr17               955860 3 -  74750902 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120908807 0 + 123690457 C
e panTro4.chr3             199792512 1364 + 202329955 M

a score=4218.000000
s hg38.chr3_KI270935v1_alt    147707 8 +    197351 CCATACCT
s papAnu2.chr2                 85524 8 - 187378091 CCATACCT
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               433235 8 -  91754291 CCATACCT
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               955863 8 -  74750902 CCATGCCT
i calJac3.chr17            I 3 C 0
e rheMac3.chrUn_JH291127       54674 40 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29084001 17 +  31377067 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120908807 0 + 123690457 C
e panTro4.chr3             199792512 1364 + 202329955 M

a score=12360.000000
s hg38.chr3_KI270935v1_alt    147715 17 +    197351 TCCACACCTTTGTTCCA
s papAnu2.chr2                 85532 17 - 187378091 TCCGCACTTTTGTTCCA
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               433243 17 -  91754291 TCCGCACTTTTGTTCCA
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               955871 17 -  74750902 TCCACACCTTCCTTCCA
i calJac3.chr17            C 0 C 0
s canFam3.chr33             29084018 17 +  31377067 TCTACACTTTTATTCCA
i canFam3.chr33            I 17 C 0
e rheMac3.chrUn_JH291127       54674 40 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120908807  0 + 123690457 C
e panTro4.chr3             199792512 1364 + 202329955 M

a score=10142.000000
s hg38.chr3_KI270935v1_alt    147732 10 +    197351 GCTGTTCCCG
s nomLeu3.chr11            120908807 10 + 123690457 GCTGTTCCTG
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr2                 85549 10 - 187378091 GCTGTtcccg
i papAnu2.chr2             C 0 I 13
s chlSab2.chr15               433260 10 -  91754291 GCTGTTCCCG
i chlSab2.chr15            C 0 I 13
s calJac3.chr17               955888 10 -  74750902 GCTGTTCCCG
i calJac3.chr17            C 0 C 0
s canFam3.chr33             29084035 10 +  31377067 GTTCTTCAAG
i canFam3.chr33            C 0 C 0
e rheMac3.chrUn_JH291127       54674 40 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e panTro4.chr3             199792512 1364 + 202329955 M

a score=418346.000000
s hg38.chr3_KI270935v1_alt    147742 366 +    197351 CCCTCCTCCCTGCCTGGGGTGCTCCTCCATCCCCGGCTCT-----------------------------------------------GCATTCCTTAGGGCCTTCCATTGTGTGCACTTAGACCCTGGGATGAGTCCTCTAACC-------------GCCGCTACC-GGACCGTCCATCTATCCCTTGCTGAATGGCACTGGGGTCATTTCTCTGTCTCCAGCTCCTGGCCCAGTGCCATGCACAAAGCCAGCCCTCAGGA-GCGACTCCGATGCTGTGTCCCTGTCCTCGGTAAGGCTCTCCCCACCCGAGAGAGCAGAGACTGTGGG-AAGTAGGCTGAGAGGGAGCCTTCACTTACATCACCCCTCAAAAGG----------------------------------------------------------------------------------------------------------------------------------CACA---------------------------------GGCCTCACCTGTATGGCCT----CACCTCTCTCAGGCAGGATGGGGATGGGGGC
s nomLeu3.chr11            120908817 370 + 123690457 CCCTCCTCCCTGCTTGGGGTGCTCCTCCATCCCTGTCTCT-----------------------------------------------GCATTCCTCAGGGCCTTCCATTGTGTGCACTTAGACCCTGGGATAAGCCCTCTAACC-------------GCCTCTATG-AGACAGTCCATCTGTCTCTTGCTGAATGGCACCGAGGTCATTTCTCTGTCTCCAGCTCCTGGCCCAGTGCCATGCACAAAGCCAGCCCTCAGCA-GCGACTCCGATGTTGTGTTCCTGTGCTTGGTAAGGCCCTCCCGACCCGAGAGAGCAGAGACTGTGGG-AAGCAGGCTGAGCGGGAGCCTTCAGTTACGTCGCCCCTCAAAAGG----------------------------------------------------------------------------------------------------------------------------------CACA---------------------------------GGCCTCGCCTGTATGGCCTGACTCACCTTTCTCAGGCGGGATGGGGATGGGGGC
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       54714 383 +    111706 CCCTCCTCCCTGCCCGGGGTGCTCTCCACCCCCTGGCTCT-----------------------------------------------GCCTTCCTTAGGGCTTTCCATTGTGTGTGCTTAGACCCTGGCATGAGTCCTCTAACCNNNNNNNNNNNNNNNNNNNNNN-NGACAGTCCATCTGTCCCTTGCTGAATGGCACCAGGGTCATTTCTCTGTCTCCAGCCCCTGGCCCAGTGCCATGCACAAAGCCAGCCCTCAGCA-GCGACTCCAATGCTGTGTCCCTGTCCTCAGTAAGGCCCTCCCGACCCGAAAGAGCAGAGACTGTGGG-AAGCAGGCTGAGAGGGAGCCATCAGTTACGTCACCGCCCAAAACG----------------------------------------------------------------------------------------------------------------------------------CACA---------------------------------AGTCTCACCTGTACGGCCTCACTCACCTTTCTCAGGCgggacggggacgggggc
i rheMac3.chrUn_JH291127   I 40 I 13
s papAnu2.chr2                 85572 370 - 187378091 ccctcctccctgcccggggtgctctccatcccccggctct-----------------------------------------------gccttcctTAGGGCTTTCCATTGTGTGTGCTTAGACCCTGGCACAAGTCCTCTAACC-------------GCCTCTACC-AGACAGTCCATCTGTCCCTTGCTGAATGGCACCAGGGTCATTTCTCTGTCTCCAGCCCCTGGCCCAGTGCCATGCACAAAGCCAGCCCTCAGCA-GCGACTCCGATGCTGTGTCCCTGTCCTCAGTAAGGCCCTCCCGACCCGAAAGAGCAGAGACTGTGGG-AAGCAGGCTGAGAGGGAGCCATCAGTTACGTCACCGCTCAAAACG----------------------------------------------------------------------------------------------------------------------------------CACA---------------------------------TGTCTCACCTGTACGGCCTCACTCACCTTTCTCAGGCGGGAcgggcacgggggc
i papAnu2.chr2             I 13 I 6
s chlSab2.chr15               433283 370 -  91754291 CCCTCCTCCCTGCCCGGGGTGCTCTCCACCCCCGGGCTCT-----------------------------------------------GCCTTCCTTAGGGCTTTCCATTGTGTGCGCTTAGACCCTGGCACGAGTCCTCTAACC-------------ACCTCTACC-AGACAGTCCATCTGTCCCTTGCTGAATGGCACCAGGGTCATTTCTCTGTCTCCAGCCCCTGGCCCAGTGCCATGCACAAAGCCAGCCCTCAGCA-GCGACTCCGATGCTGTGTCCCTGTCCTCAGTAAGGCCCTCCCGACCCGAAAGAGCAAAGACTGTGGG-AAGCAGGCTGAGAGGGAGCCATCAGTTACGTCACCGCTCAAAACG----------------------------------------------------------------------------------------------------------------------------------CACA---------------------------------TGTCTCACCTGCACGGCCTCACTCACCTTTCTCAGACGGGACGGGGACGGGGGC
i chlSab2.chr15            I 13 C 0
s calJac3.chr17               955898 327 -  74750902 CCCTCCTCCCTGCCCTGAG------------------------------------------------------------------------------GCGTTTTCCATTGTGTGTGCTTATGCCCTGGGATTAATCCTCTAACT-------------GCCTCTACC-AGATAGT-GATCTGCCCCTTGCTGAATGGCACTAGGGTCATTTCTCTGTCTCTAGCT------------CCAGGCACAAAGCCAGCCCTCAGCA-GCGACTCTGATGCTGTCTCCCTGTCCTCGGTAAGGCCCTTCCCACCCAAGAGCGCAGAGACCATGGGCCAGCAGGCTGAGAAGCAACCTTTAGTTATGTCACCCCTCAAAAGG----------------------------------------------------------------------------------------------------------------------------------CATG---------------------------------GGGCACACCTCTACAGCATGACTCACCTTTCTCAGACGGGATGGGGACGGGGGC
i calJac3.chr17            C 0 C 0
s canFam3.chr33             29084045 569 +  31377067 CCCTCTTGCCTCCTTGGGATGCTTCTCCTTCTCCAGCTCCTATTCATTCTTTCCAGGAAGCCGCCTCTTCGCCTTGAGCATACCCCGACCTCCCCTGGGACCTTCCATTGTGT---CTAATACCCTGCATTTATTCCTCTAATC-------------GCACCTATCAAGGCAGCAGGTCCGTCTCTTACTAAACAGTACCGTGGTCACTTC----TCTCCACCTCCCAGCCTGGTGCCATGTACAGAGCCAGCCCTCCGCACCCAACTCTGATGCTGTCCCATAGCCCACTGT-GGGAGTTGACGACCCGAGAGAGT-----CTATGAGCAGGCGGGCTGAGACG-AGTCTTCAGTTCCATCTCCCCTCTAAAGGGGGTAGGGGAGCAGCTGGACTACCGATGGCCCAGAGGAGGCAGCACACATACCCACAGAACCAGCTCCCCCTGCTCCCCCAAAAGAGCCCTCACTGGTAGATCTAATCGAGCTGCCAAAACTACAGCATCCACATCTAGCTCAGATCTCTATATCCCAGAGTGGAGGGACCCCACCTCTCCAGGGACATTTACCTTTCTCTGGCTTGATGGGGACTGGGGC
i canFam3.chr33            C 0 C 0
e mm10.chr16                65449197 1915 -  98207768 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e panTro4.chr3             199792512 1364 + 202329955 M

a score=29621.000000
s hg38.chr3_KI270935v1_alt    148108 37 +    197351 AGCTGTGGAGCGGGTGTGCATGGCAG-TGCTGGGAATG
s nomLeu3.chr11            120909187 37 + 123690457 GGCTGTGGAGCGGGTGTGCGTGGCAG-TGCTGGGAGCG
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr2                 85948 37 - 187378091 ggctgtggagcgggtgtgcgtggcag-tgctgggagtg
i papAnu2.chr2             I 6 I 39
s chlSab2.chr15               433653 37 -  91754291 AGCTGTGGAGCGGGTGTGCGTGGCAG-TGCTGGGAGTG
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               956225 37 -  74750902 AGCTGTGGATCGGGTGTCTGTGGAAG-TGTTGGGAATG
i calJac3.chr17            C 0 C 0
s canFam3.chr33             29084614 34 +  31377067 AGCCGTTGAGTGTGC---CGTGGATGCTGCTGGAGGG-
i canFam3.chr33            C 0 C 0
e rheMac3.chrUn_JH291127       55097 13 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e macFas5.chr2                 83084 14732 + 192460366 M
e ponAbe2.chr3             199797169 30000 + 202140232 M
e panTro4.chr3             199792512 1364 + 202329955 M

a score=91831.000000
s hg38.chr3_KI270935v1_alt    148145  97 +    197351 GTGGAAATGATGGTCTGGGAGG---------------------------------------------------------------------------------------TTGTGGGGGGTGGTGATGTGGCTGTGCGTCTCCCACCGTCTGTCTTCAGTGACGGTGTTGTCATTCCTGGACACG
s nomLeu3.chr11            120909224  97 + 123690457 GCGGAAATGATGGTCTGGGAGG---------------------------------------------------------------------------------------TTGTGGGGGGTGGGGATGTGGCTGTGCGTCCCCCACCGTCTGTCTTCAGTGACGGTGTTGTCATCCCGGGACAGG
i nomLeu3.chr11            C 0 C 0
s macFas5.chr2                 98034  97 + 192460366 GTGGCTGTGGTGGTCTTGGAGG---------------------------------------------------------------------------------------TTGTTGGGGGTAGTGATGTGACTCGGTGACTCTCGCTGCTTGTCTTCACTGAGGTTGTCATCATTCCTGGACACA
i macFas5.chr2             M 14732 C 0
s papAnu2.chr2                 86024  97 - 187378091 ggggctgtggcggtctgggagg---------------------------------------------------------------------------------------ttgttgggggtAGTGATGTGACTCGGCCACTCTCGCTGCCTGTCTTCACTGAGGTTGTCGTCATTCCTGGACACG
i papAnu2.chr2             I 39 C 0
s chlSab2.chr15               433690 184 -  91754291 GCGGAGGTGGCGGCCTGGGAGGTGGTCGGGGGTGGGGATGGGGCTGTGGTGGAGGTGGCGGTCTCAGAGGTCGTTGGGGGTGTGGATGTGGCTGTGGCGGTCTGGGAGGTGGTCGGGGGTAGTGAGGTGACTCGGCCACTCTCGCTGCCTGTCTTCACTGACGTTGTCGTCATTCCTGGACACG
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               956262  97 -  74750902 GCGGAGGTGATGGTTCGGGAGG---------------------------------------------------------------------------------------TTGTTGGGGGCAGTGATGCGGCCGTGCTTCTCCCAGTGTCGGTCTTCAGGGAGGGTGTCATCATTCCTGGACATG
i calJac3.chr17            C 0 C 0
s canFam3.chr33             29084648  97 +  31377067 AGAGTAGTGAGCGTCCGCGAGG---------------------------------------------------------------------------------------TTGTTGAAGATAGTGATGTTGTTGTGCTACTCTGGCTGCCTATCGCCAGGGAAGTTACCGTGGTTCCTGGGCATA
i canFam3.chr33            C 0 C 0
e rheMac3.chrUn_JH291127       55097  13 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e panTro4.chr3             199792512 1364 + 202329955 M

a score=242027.000000
s hg38.chr3_KI270935v1_alt    148242 141 +    197351 TGAAAAGACAAGGC-GGGGTGTTTCTTACAGTAACAAAACAGGAGAGTCAAAGAGATTCAAAGAAATCAGGAGCTGGAAGAGAGAGCTGGAAA-CTC-CTTG----TCTCTCCCCTGCTCATATCCAAACTACTCTCGACATCAGTGC-
s nomLeu3.chr11            120909321 142 + 123690457 TGAAAAGAGAAGGCAGGGGTGGTTCTTACAGTAAGAGAACAGCAGAGTCGAAGAGATTCAAAGAAATCAGGAGGTGGAAGAGAGAGCTGGAAA-CTC-CTTG----TCTATCCGCTGGTCATATCCAGACTACTTTCGACATCAGTGG-
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       55110 142 +    111706 TGAAAAGAGAAGGCAGGGGTGGTTCTTACAGTAAGAAAACAGCAGAGTCAAAGAGATTCAAAGAAATCAGGAGCTGGAAGAGAGAGCTGGAAA-CTC-CTTG----TCTGTCCACTGGTCATATCCAAACCACTCTCGACATCAGCGG-
i rheMac3.chrUn_JH291127   I 13 C 0
s macFas5.chr2                 98131 142 + 192460366 TGAAAAGAGAAGGCAGGGGTGGTTCTTACAGTAAGAGAACAGCAGAGTCAAAGAGATTCAAAGAAATCAGGAGCTGGAAGAGAGAGTTGGAAA-CTC-CTTG----TCTGTCCACTGGTCATATCCAAACCACTCTCGATATCAGCAG-
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                 86121 142 - 187378091 TGAAAAGAGAAGGCAGGGGTGGTTCTTACAGTAAGAGAACAGCAGAGTCAAAGAGATTCAAAGAAATCAGGAGCTGGAAGAGAGAGCTGGAAA-CTC-CTTG----TCTGTCCGCTGGTCATATCCAAACCACTCTGGACATCAGCGG-
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               433874 141 -  91754291 TGAAAAGAGAAGGCAGGGGTGGTTCTTACAGTAAGAGAACAGCAGAGTCAAAGAGATTCAAAGAAATCAGGAGCTGGAAGAG-GAGCTGGAAA-CTC-CGTG----TCTGTCCGCTGGTCATATCCAAACCACTCTCGACATCAGCGG-
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               956359 142 -  74750902 TGAACAGAGAAGGCAGGGGTGGCTCTTACAGT---AGAACAGCAGAGTTAGAGAGATTCAGAGAAATCAGGAGCTGGAAGA--GAGCTAGAAACCTC-CTTGTCCATCTGTCTACTGGTCACGTCCAAGGCACTCTCCACATAAGAGG-
i calJac3.chr17            C 0 I 303
s canFam3.chr33             29084745 127 +  31377067 -TAGGAGAGAAGATTGCAGTGGGTCTTATTATCTGAAAGTAGCA------AACAGTGTCACAGATTTCAGGAGATGGAAGA----------AA-CTCTCTCA----TCCATCTTCTGCTCAAACCCAAACTGCTCCCGACAATAAGAAA
i canFam3.chr33            C 0 C 0
e mm10.chr16                65449197 1915 -  98207768 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e panTro4.chr3             199792512 1364 + 202329955 M

a score=63137.000000
s hg38.chr3_KI270935v1_alt    148383 42 +    197351 TTTTCGATTGCGGCACAAAGGAGGGTGAGCCTGTCACCCACC
s nomLeu3.chr11            120909463 42 + 123690457 TTTTCGATTGGGGCACACAGGAGAGTGAGCCTGTCACCCACC
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       55252 42 +    111706 TTTTCGACTGGGGCAGAGAGTGGGGTGAGCCTGTCACCCACC
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                 98273 42 + 192460366 TTTTCGACTGGGGCAGAGAGTGGGGTGAGCCTGTCACCCACC
i macFas5.chr2             C 0 I 147
s papAnu2.chr2                 86263 42 - 187378091 GTTTCGACTGGGGCAGAGAGTGGGGTGAGCCTGTCACCCACC
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               434015 40 -  91754291 GTTTCGACTGGGGC--AGAGTGGGGTAAGCCTGTCGCCCACC
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               956804 40 -  74750902 TTTTCTACGGGGGCAGGGAGGAGGGTG-GCCTGTCACCCCC-
i calJac3.chr17            I 303 C 0
s canFam3.chr33             29084872 42 +  31377067 CAGTCCTCTGGGGTAGAGTGGATGGTCCGCCTGTCACTCTCC
i canFam3.chr33            C 0 C 0
e mm10.chr16                65449197 1915 -  98207768 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e panTro4.chr3             199792512 1364 + 202329955 M

a score=296732.000000
s hg38.chr3_KI270935v1_alt    148425 178 +    197351 ACACCCA---TCACCTCCTCCCCTGTGGGACCTGACACGGCCCCACCAGGTAATGCGAATGCACCAGTGTT-CTCAGGTACTCCT-TAGGCTGAATTCCGCC-AAGGGGCCCACTGGGAGACATAAAGG--CGAGGCAGTTGGCAGCTACCTGATGTTTCCATCTTCAGAGGGGAGTCCGAGGATA
s nomLeu3.chr11            120909505 178 + 123690457 ACACCCA---TCGCCTCCTCCCCTGTGGGACCTGACTCAGCCACACCAGGTAATGCGAATGCACCAGTGTT-CTCAGGTACTCCT-GAGGCTGAATTCCACC-AAGGGGCCCACTGGGAGAGATGAAGA--CGAGGCAGATGGCAGTTACCTGATGTTTCCTTCTTCAGAGGGGAGCCCGAGGATG
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       55294 178 +    111706 ACACCCA---TCACCTCCTCCTCTGTGGGACCTGACTCAGTCCCACCGGATAATGTGAATGCGCCAGTGTT-CTCAAGTACTCCT-TAGGCTGAATTCAGCC-AAGGGGGCCACTGGGAGAGACGAAGA--CAAGGCAGATGGCAGCTACCTGATGTTTCCGTCTTCAGAGGGGAGCCCGAGGATA
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                 98462 178 + 192460366 ACACCCA---TCACCTCCTCCTCTGTGGGACCTGACTCAGTCCCACCGGATAATGTGAATGTGCCAGTGTT-CTCAAGTACTCCT-TAGGCTGAATTCAGCC-AAGGGGGCCACTGGGAGAGATGAAGA--CAAGGCAGATGGCAGCTACCTGATGTTTCCGTCTTCAGAGTGGAGCCCGAGGATA
i macFas5.chr2             I 147 C 0
s papAnu2.chr2                 86305 178 - 187378091 ACACCCA---TCACCTCCTCCTCTGTGGGACCTGACTCAGTCCCACCGGATAATATGAATGCGCCAGTGTT-CTCAAGTACTCCT-TAGGCTGAATTCAGCC-AAGGGGGCCACTGGGAGAGACGAAGA--CAAGGCAGATGGCAGCTACCTGATGTTTCCGTCTTCAGAGGGGAGCCCGAGGATA
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               434055 178 -  91754291 ACACCCA---TCACCTCCTCCTCTGTGGGACCTGACTCAGTCCCACCGGATACTGTGAATGCGCCAGTGTT-CTCCAGTACTCCT-TAGGCCGAATTCAGCC-AAGGGGGCCACTGGGAGAGACGAAGA--CAAGGCAGATGGCAGCTACCTGATGTTTCCGTCTTCAGAGGGGAGCCCGAGGATA
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               956844 170 -  74750902 ACACCCA---TCGCCTCCTCCTCTGTGGGCCCTAACCCGGCCCCACCAGGT------AATTCACCAGTGCT-GGCAAGCACTC----AGGCTGGATTGAACCTAGGGGGGTCAGTGGGAGAGACGAAGG--CAAGGAAGGGGGCCGCTACCAGGTGCTTCCGTCTTCCGAGCTGCGCCCGAGGACA
i calJac3.chr17            C 0 C 0
s canFam3.chr33             29084914 175 +  31377067 ACACTCGCACTCAATTCGTCTTCTAGTGGAACTG--------CCCTCAAACTAGGCGAACGCACCATCATCGCTCAAGCCCTCCTCTAGGTCGAACTGAACG-AATGAGGCCACAGTGAGAGACAAATATCCCGGACTCCCGGC--CTACCTGACGTCTGAGTGCTCAGAGTGCGGCTGGAGAATG
i canFam3.chr33            C 0 C 0
e mm10.chr16                65449197 1915 -  98207768 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e panTro4.chr3             199792512 1364 + 202329955 M

a score=12185.000000
s hg38.chr3_KI270935v1_alt    148603 7 +    197351 CTGTGGA
s nomLeu3.chr11            120909683 7 + 123690457 CTGTAGA
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       55472 7 +    111706 CTGTGGA
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                 98640 7 + 192460366 CTGTGGA
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                 86483 7 - 187378091 CTGTGGA
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               434233 7 -  91754291 CTGTGGA
i chlSab2.chr15            C 0 C 0
s canFam3.chr33             29085089 7 +  31377067 CTGTTGA
i canFam3.chr33            C 0 I 529
e mm10.chr16                65449197 1915 -  98207768 I
e calJac3.chr17               957014 0 -  74750902 C
e ponAbe2.chr3             199797169 30000 + 202140232 M
e panTro4.chr3             199792512 1364 + 202329955 M

a score=48133.000000
s hg38.chr3_KI270935v1_alt    148610 46 +    197351 AGCTGAGGTAGCACTGCTGACAGCAAGAGGGGTGGTGTGACCTGTG
s nomLeu3.chr11            120909690 46 + 123690457 TGCTGAGGAAGTGCTTCTGACAGGAAGAGAGGTGCTGTGACCTGTG
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       55479 46 +    111706 TGCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGACCTGTG
i rheMac3.chrUn_JH291127   C 0 I 620
s macFas5.chr2                 98647 46 + 192460366 TGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTG
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                 86490 46 - 187378091 TGCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGACCTGTG
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               434240 46 -  91754291 TGCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGACCTGTG
i chlSab2.chr15            C 0 I 620
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957014  0 -  74750902 C
e ponAbe2.chr3             199797169 30000 + 202140232 M
e panTro4.chr3             199792512 1364 + 202329955 M

a score=793.000000
s hg38.chr3_KI270935v1_alt    148656 3 +    197351 GAT
s nomLeu3.chr11            120909736 3 + 123690457 GAT
i nomLeu3.chr11            C 0 C 0
s macFas5.chr2                 98693 3 + 192460366 AAT
i macFas5.chr2             C 0 T 56
s papAnu2.chr2                 86536 3 - 187378091 AGT
i papAnu2.chr2             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957014 0 -  74750902 C
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e panTro4.chr3             199792512 1364 + 202329955 M

a score=29.000000
s hg38.chr3_KI270935v1_alt    148659 1 +    197351 A
s nomLeu3.chr11            120909739 1 + 123690457 G
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr2                 86539 1 - 187378091 A
i papAnu2.chr2             C 0 T 57
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957014 0 -  74750902 C
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e panTro4.chr3             199792512 1364 + 202329955 M

a score=1301.000000
s hg38.chr3_KI270935v1_alt    148660 17 +    197351 CTGAGGAAAGGCTGGTG
s nomLeu3.chr11            120909740 17 + 123690457 CTGAGGAAGTGCTGGTG
i nomLeu3.chr11            C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957014  0 -  74750902 C
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e panTro4.chr3             199792512 1364 + 202329955 M

a score=14474.000000
s hg38.chr3_KI270935v1_alt    148677 74 +    197351 ACAGGAAGAGGGGTGGCCTGACCTGTGGATGCTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGTGTCACCTGT
s panTro4.chr3             199793876 71 + 202329955 ACAGGAAGAGGAGTGGCTT-ACCTGTGGATACTGAGGAAGTATCCGT-ACAGGAAGAGGGGTG-TGTCACCTGT
i panTro4.chr3             M 1364 I 693
s nomLeu3.chr11            120909757 74 + 123690457 ACAGGAAGAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGTGCTGGTGACAGGAAGAGAGGTGCTGTGACCTGT
i nomLeu3.chr11            C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957014  0 -  74750902 C
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=7386.000000
s hg38.chr3_KI270935v1_alt    148751 92 +    197351 GGATGCTGAGGAAGTGTCGGTGACAGGAAGAGGCGTGGCGTGACCTGTGGACACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGCGTGAC
s nomLeu3.chr11            120909831 92 + 123690457 GGATGCTGAGGAAGCGCTGGTGACAGGAAGAGAGGTGGCGTGACCTGTGGATGCTGAGGAAGCGCTGGTGACAGGAAGAGAGGTGGTGTGAC
i nomLeu3.chr11            C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957014  0 -  74750902 C
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e panTro4.chr3             199793947 693 + 202329955 I

a score=11373.000000
s hg38.chr3_KI270935v1_alt    148843 52 +    197351 CTGTGGATGCTGAGGAAGTGCTGGTGACAGGAAGAGGGGTGGTGTGACCTGT
s nomLeu3.chr11            120909923 52 + 123690457 CTGTGGATGCTGAGGAAGTGTCAGTGACAGGAAGAGGGGTGGGGTGGCCTGT
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr2                 86483 52 - 187378091 CTGTGGATGCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGACCTGT
i papAnu2.chr2             T 57 T 52
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957014  0 -  74750902 C
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e panTro4.chr3             199793947 693 + 202329955 I

a score=3415.000000
s hg38.chr3_KI270935v1_alt    148895 44 +    197351 AGATGCTGAGGAAGGGCTGGTGACAGGAAGAGGGGTGGTGTGAC
s nomLeu3.chr11            120909975 44 + 123690457 GGATTCTGAGGAAGCGCTGGTGACAGGAAGAGAGGTGATGTGAC
i nomLeu3.chr11            C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957014  0 -  74750902 C
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86535 52 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e panTro4.chr3             199793947 693 + 202329955 I

a score=21011.000000
s hg38.chr3_KI270935v1_alt    148939 52 +    197351 CTGTGGATGCTGAGGAAGTGCTGGTGACAGGAAGAGGGGTGGCGTGACCTGT
s nomLeu3.chr11            120910019 52 + 123690457 CTGTGGATGCTGAGGAAGTGTCAGTGACAGGAAGAGAAGTGATGTGACCTGT
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr2                 86483 52 - 187378091 CTGTGGATGCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGACCTGT
i papAnu2.chr2             T 52 T 48
s calJac3.chr17               957014 52 -  74750902 CTGTGGGTGCCGAGGCGGTGCTGGTGACAGCAAGAGGGGCCGCGTGGCCTGT
i calJac3.chr17            C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e panTro4.chr3             199793947 693 + 202329955 I

a score=1353.000000
s hg38.chr3_KI270935v1_alt    148991 3 +    197351 AGA
s nomLeu3.chr11            120910071 3 + 123690457 GGA
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr2                 86487 3 - 187378091 GGA
i papAnu2.chr2             T 48 C 0
s calJac3.chr17               957066 3 -  74750902 GGA
i calJac3.chr17            C 0 T 55
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e panTro4.chr3             199793947 693 + 202329955 I

a score=9461.000000
s hg38.chr3_KI270935v1_alt    148994 49 +    197351 TGCTGAGGAAGGGCTGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGAT
s nomLeu3.chr11            120910074 49 + 123690457 TGCTGAGGAAGTGTCAGTGACAGGAAGAGAAGTGATGTGACCTGTGGAT
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr2                 86490 49 - 187378091 TGCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGACCTGTGAGT
i papAnu2.chr2             C 0 T 54
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e panTro4.chr3             199793947 693 + 202329955 I

a score=3017.000000
s hg38.chr3_KI270935v1_alt    149043 42 +    197351 GCTGAGGAAGGGCTGGTGACAGGAACAGGGGTGGCGTGACCG
s nomLeu3.chr11            120910123 42 + 123690457 GCTGAGGAAGCACTGGTGACAGGAAGAGAGGTGGTGTGACCT
i nomLeu3.chr11            C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86539 54 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e panTro4.chr3             199793947 693 + 202329955 I

a score=11730.000000
s hg38.chr3_KI270935v1_alt    149085 54 +    197351 GTGGATGCTGAGGAAGTGCTGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGAT
s nomLeu3.chr11            120910165 54 + 123690457 GTGGATGCTGAGGAAGTGTCAGTGACAGGAAGAGAGGTGGTGTGACCTGTGGAT
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr2                 86485 54 - 187378091 GTGGATGCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGACCTGTGAGT
i papAnu2.chr2             T 54 T 56
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e panTro4.chr3             199793947 693 + 202329955 I

a score=20137.000000
s hg38.chr3_KI270935v1_alt    149139 280 +    197351 GCTGAGGAAGGGCTAGTGACAGGAAGAGGCATGGTGTCACCTGTGGATACTGAGGAAGTGTTGGTGACAGGAAGAGGGGTGGCCTGACCTGTGGATGCCGAGGAAATGTCGGTGACAGGAAGACGGGTGGTGTCACCTGTGGAAGCTGAGGAAAGGCCGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGCACAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGTGTCAC
s nomLeu3.chr11            120910219 280 + 123690457 GCTGAGGACGTGTCAGTGACAGGAAGAGAGGTGGTGTGACCTGTGGATGCTGAGGAAGTGTCAGTGACAGGAAGAGAGGTGGTGTGACCTGTGGATGCTGAGGAAGTGTCAGTGACAGGAAGAGAGGTGGTGTGACCTGTGGATGCTGAGGAAGTGTCAGTGACAGGAAGAGAGGTGGTGTGACCTGTGGATGCTGAGGACGTGTCAGTGACAGGAAGAGGGGTGGTGTGACCTGTGGATGCTGAGGAAGTGTCAGTGACAGGAAGAGAAGTGATGTGAC
i nomLeu3.chr11            C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069  55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696  56 + 192460366 T
e papAnu2.chr2                 86539  56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e panTro4.chr3             199793947 693 + 202329955 I

a score=23202.000000
s hg38.chr3_KI270935v1_alt    149419 57 +    197351 CTGTGGATGCTGAGGAAGTGTCGGTGACATGAAGAGGGGTGGCATGACCTGTGGATA
s nomLeu3.chr11            120910499 57 + 123690457 CTGTGGATGCTGAGGAAGCACTGGTGACAGGAAGAGAAGTGGTGTGACCTGTGGATG
i nomLeu3.chr11            C 0 C 0
s macFas5.chr2                 98640 57 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAATA
i macFas5.chr2             T 56 T 57
s papAnu2.chr2                 86483 57 - 187378091 CTGTGGATGCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGACCTGTGAGTA
i papAnu2.chr2             T 56 T 57
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e panTro4.chr3             199793947 693 + 202329955 I

a score=10366.000000
s hg38.chr3_KI270935v1_alt    149476 143 +    197351 CTGAGGAAGTCTCGGTGACAAGAAGAGGGGTGGTGTCACCTGTGGATGATGAGGAAGTGTCGGTGACAAGAAGAGAGGTGGTGTCACCTGTGGATGCTGAGGAAGTCTCGGTGACAGGAAGAGAGGTGGCATGACCGGTGGAT
s nomLeu3.chr11            120910556 143 + 123690457 CTGAGGAAGCGCTGGTGACAGGAAGAGGGGTGATGTGACCTGTGGATGCTGAGGAAGTGTCAGTGACAGGAAGAGGGGTGGGGTGGCCTGTGGATTCTGAGGAAGCATCAGTGACAGGAAGAGAGGTGGTGTGACCTGTGGAT
i nomLeu3.chr11            C 0 M 3534
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069  55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98697  57 + 192460366 T
e papAnu2.chr2                 86540  57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e panTro4.chr3             199793947 693 + 202329955 I

a score=0.000000
s hg38.chr3_KI270935v1_alt    149619 65 +    197351 GCTGAGGAAGGGCTAGTGACAGGAAGAGGCGTGGTGTCACCTGTGGATACTGAGGAAAGGCTGGT
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98697 57 + 192460366 T
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M
e panTro4.chr3             199793947 693 + 202329955 I

a score=2003.000000
s hg38.chr3_KI270935v1_alt    149684 23 +    197351 GACAGGAAGAGGGGTGGCCTGAC
s panTro4.chr3             199794640 23 + 202329955 GACAGGAAGAGGGGTGGCGTGAC
i panTro4.chr3             I 693 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98697 57 + 192460366 T
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=23147.000000
s hg38.chr3_KI270935v1_alt    149707 56 +    197351 CTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGAT
s panTro4.chr3             199794663 56 + 202329955 CTGTGGATACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGTGTCACCTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 56 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAAT
i macFas5.chr2             T 57 T 56
s papAnu2.chr2                 86483 56 - 187378091 CTGTGGATGCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGACCTGTGAGT
i papAnu2.chr2             T 57 T 56
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=1488.000000
s hg38.chr3_KI270935v1_alt    149763 23 +    197351 GCTGAGGAAGGGCTAGTGACAGG
s panTro4.chr3             199794719 23 + 202329955 ACTGAGGAAGCGTCGGTGACAGG
i panTro4.chr3             C 0 T 672
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=5854.000000
s hg38.chr3_KI270935v1_alt    149786 68 +    197351 AAGAGGCGTGGTGTCACCTGTGGATACTGAGGAAAGGCTGGTGACAGGAAGAGGGGTGGCCTGACCTG
s panTro4.chr3             199794070 68 + 202329955 AAGAGGGGTGGTGTCACCTGTGGGTACTGAGGAAGGGCTGGTGACAGGAAGAGGGGTGGCGTGACCTG
i panTro4.chr3             T 672 T 191
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=3487.000000
s hg38.chr3_KI270935v1_alt    149854 45 +    197351 TGGATGCTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGTGTCAC
s panTro4.chr3             199793947 45 + 202329955 TGGATGCTGAGGAAGCGTCGGTGACAGAAGAGGGGGTGTTGTCAC
i panTro4.chr3             T 191 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=19354.000000
s hg38.chr3_KI270935v1_alt    149899 48 +    197351 CTGTGGATGCTGAGGAAGTGCTGGTGACAGGAAGAGCGGTGGCCTGAC
s panTro4.chr3             199793992 48 + 202329955 CTGTGGATGCTGAGGAAGGGATGGTGACAGGAAGAGGGGTGGTGTGAC
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 48 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGAC
i macFas5.chr2             T 56 T 48
s papAnu2.chr2                 86483 48 - 187378091 CTGTGGATGCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGAC
i papAnu2.chr2             T 56 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=3825.000000
s hg38.chr3_KI270935v1_alt    149947 8 +    197351 CTGTGGAT
s panTro4.chr3             199794040 8 + 202329955 CTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 8 + 192460366 CTGTGGAT
i macFas5.chr2             T 48 C 0
s papAnu2.chr2                 86531 8 - 187378091 CTGTGAGT
i papAnu2.chr2             C 0 T 56
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=4633.000000
s hg38.chr3_KI270935v1_alt    149955 22 +    197351 GCTGAGGAAGTGTCGGTGACAG
s panTro4.chr3             199794048 22 + 202329955 ACTGAGGAAGTGTCGGTGACAG
i panTro4.chr3             C 0 I 191
s macFas5.chr2                 98648 22 + 192460366 GCTGAGAAAGCACCCGTGACAG
i macFas5.chr2             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=5857.000000
s hg38.chr3_KI270935v1_alt    149977 26 +    197351 GAAGAGGGGTGGTGTGACCTGTGGAT
s panTro4.chr3             199794261 26 + 202329955 GAAGAGGGGTGGTGTCACCTGTGGAT
i panTro4.chr3             I 191 C 0
s macFas5.chr2                 98670 26 + 192460366 GAAGAGTGGTAGCGTGACCTGTGAAT
i macFas5.chr2             C 0 T 56
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=1752.000000
s hg38.chr3_KI270935v1_alt    150003 23 +    197351 GCTGAGGAAGGGCTAGTGACAGG
s panTro4.chr3             199794287 23 + 202329955 GCTGAGGAAGAGATGGTGACAGG
i panTro4.chr3             C 0 T 240
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=1412.000000
s hg38.chr3_KI270935v1_alt    150026 17 +    197351 AAGAGGCGTGGTGTCAC
s panTro4.chr3             199794070 17 + 202329955 AAGAGGGGTGGTGTCAC
i panTro4.chr3             T 240 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=23708.000000
s hg38.chr3_KI270935v1_alt    150043 56 +    197351 CTGTGGATACTGAGGAAAGGCTGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGAT
s panTro4.chr3             199794087 56 + 202329955 CTGTGGGTACTGAGGAAGGGCTGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 56 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAAT
i macFas5.chr2             T 56 T 54
s papAnu2.chr2                 86483 56 - 187378091 CTGTGGATGCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGACCTGTGAGT
i papAnu2.chr2             T 56 T 56
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=10728.000000
s hg38.chr3_KI270935v1_alt    150099 138 +    197351 GCTGAGGAAGTGTCGGTGACAGGAAGCGGGGTGGCGTGACCGGTGGATGCTGAGGAAGGGCTGGTGACATGAAGAGGGTTGGCGTGACCTGTGGATGCTGAGGAAGTGTCGGTGACAGGAAGCGGGGTGGCGTGACTG
s panTro4.chr3             199794143 138 + 202329955 ACTGAGGAAGCGTCGGTGACAGGAAGAGGGTTGGCGTGACCTGTGGATGCTGAGGAAGGGCTGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGATACTGAGGAAGTATCAGTGACAGGAAGAGGGGTGGTGTCACCT
i panTro4.chr3             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069  55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696  54 + 192460366 T
e papAnu2.chr2                 86539  56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=9583.000000
s hg38.chr3_KI270935v1_alt    150237 46 +    197351 GTGGATGCTGAGGAAGGGTTGGTGACAGGAAGAGGGGTGGCGTGAC
s panTro4.chr3             199794281 46 + 202329955 GTGGATGCTGAGGAAGAGATGGTGACAGGAAGAGGGGTGGTGTCAC
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98642 46 + 192460366 GTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGAC
i macFas5.chr2             T 54 I 8
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=6198.000000
s hg38.chr3_KI270935v1_alt    150283 12 +    197351 CTGTGGATGCTG
s panTro4.chr3             199794327 12 + 202329955 CTGTGGATGCTG
i panTro4.chr3             C 0 C 0
s papAnu2.chr2                 86483 12 - 187378091 CTGTGGATGCTG
i papAnu2.chr2             T 56 C 0
s calJac3.chr17               957014 12 -  74750902 CTGTGGGTGCCG
i calJac3.chr17            T 55 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98688  8 + 192460366 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=2910.000000
s hg38.chr3_KI270935v1_alt    150295 3 +    197351 AGG
s panTro4.chr3             199794339 3 + 202329955 AGG
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98696 3 + 192460366 AGG
i macFas5.chr2             I 8 T 44
s papAnu2.chr2                 86495 3 - 187378091 AGG
i papAnu2.chr2             C 0 C 0
s calJac3.chr17               957026 3 -  74750902 AGG
i calJac3.chr17            C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=23857.000000
s hg38.chr3_KI270935v1_alt    150298 40 +    197351 AAGTGTTGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGA
s panTro4.chr3             199794342 40 + 202329955 AAGAGATGGTGACAGGAAGAGGGGTGGTGTGACCTGTGGA
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98655 40 + 192460366 AAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAA
i macFas5.chr2             T 44 C 0
s papAnu2.chr2                 86498 40 - 187378091 ATGCGCTGCTGACGGCAAGAGGGGTGGCATGACCTGTGAG
i papAnu2.chr2             C 0 C 0
s calJac3.chr17               957029 40 -  74750902 CGGTGCTGGTGACAGCAAGAGGGGCCGCGTGGCCTGTGGA
i calJac3.chr17            C 0 T 55
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=546.000000
s hg38.chr3_KI270935v1_alt    150338 1 +    197351 T
s panTro4.chr3             199794382 1 + 202329955 T
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98695 1 + 192460366 T
i macFas5.chr2             C 0 T 56
s papAnu2.chr2                 86538 1 - 187378091 T
i papAnu2.chr2             C 0 T 56
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=3472.000000
s hg38.chr3_KI270935v1_alt    150339 40 +    197351 GCTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGTGTCAC
s panTro4.chr3             199794383 40 + 202329955 ACTGAGGAAGCGTCGGTGACAGGAAGAGAGGTGGTGTCAC
i panTro4.chr3             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=35993.000000
s hg38.chr3_KI270935v1_alt    150379 55 +    197351 CTGTGGATGCTGAGGAAGTGCTGGTGACAGGAAGAGGGGTGGCATGACCTGTGGA
s panTro4.chr3             199794423 55 + 202329955 CTGTGGATACTGAGGAAGCGTCGGTGACAGAAAGAGGGGTGGTGTCACCTGTGGA
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 55 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAA
i macFas5.chr2             T 56 C 0
s papAnu2.chr2                 86483 55 - 187378091 CTGTGGATGCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGACCTGTGAG
i papAnu2.chr2             T 56 C 0
s calJac3.chr17               957014 55 -  74750902 CTGTGGGTGCCGAGGCGGTGCTGGTGACAGCAAGAGGGGCCGCGTGGCCTGTGGA
i calJac3.chr17            T 55 T 55
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=1092.000000
s hg38.chr3_KI270935v1_alt    150434 2 +    197351 TA
s panTro4.chr3             199794478 2 + 202329955 TA
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98695 2 + 192460366 TA
i macFas5.chr2             C 0 T 48
s papAnu2.chr2                 86538 2 - 187378091 TA
i papAnu2.chr2             C 0 T 57
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=8008.000000
s hg38.chr3_KI270935v1_alt    150436 39 +    197351 CTGAGGAAGCGTCGGTGACAGGAACAGGGGTGGCGTGAC
s panTro4.chr3             199794480 39 + 202329955 CTGAGGGAGCGTCGGTGACAGGAAGAGGGGTGGTGTCAC
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98649 39 + 192460366 CTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGAC
i macFas5.chr2             T 48 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=4191.000000
s hg38.chr3_KI270935v1_alt    150475 8 +    197351 CTGTGGAT
s panTro4.chr3             199794519 8 + 202329955 CTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98688 8 + 192460366 CTGTGAAT
i macFas5.chr2             C 0 T 48
s papAnu2.chr2                 86483 8 - 187378091 CTGTGGAT
i papAnu2.chr2             T 57 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=18709.000000
s hg38.chr3_KI270935v1_alt    150483 48 +    197351 GCTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCATGACCTGTGGAT
s panTro4.chr3             199794527 48 + 202329955 ACTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98648 48 + 192460366 GCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAAT
i macFas5.chr2             T 48 T 56
s papAnu2.chr2                 86491 48 - 187378091 GCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGACCTGTGAGT
i papAnu2.chr2             C 0 T 56
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=1735.000000
s hg38.chr3_KI270935v1_alt    150531 22 +    197351 GCTGAGGAAGTGTCGGTGACAG
s panTro4.chr3             199794575 22 + 202329955 ACTGAGGAAGCATCGGTGACAG
i panTro4.chr3             C 0 T 623
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=0.000000
s hg38.chr3_KI270935v1_alt    150553 1 +    197351 G
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M
e panTro4.chr3             199794597 623 + 202329955 T

a score=1298.000000
s hg38.chr3_KI270935v1_alt    150554 18 +    197351 AAGAGGGCGTGGTGTCAC
s panTro4.chr3             199793974 18 + 202329955 AAGAGGGGGTGTTGTCAC
i panTro4.chr3             T 623 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=12525.000000
s hg38.chr3_KI270935v1_alt    150572 56 +    197351 CTGTGGATGCTGAGGAAGTGTCAGTGACAGGAAGAGGGGTGGCGTGACCTGTGGAT
s panTro4.chr3             199793992 56 + 202329955 CTGTGGATGCTGAGGAAGGGATGGTGACAGGAAGAGGGGTGGTGTGACCTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 56 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAAT
i macFas5.chr2             T 56 T 56
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=1988.000000
s hg38.chr3_KI270935v1_alt    150628 22 +    197351 GCTGAGGAAGTGTCGGTGACAG
s panTro4.chr3             199794048 22 + 202329955 ACTGAGGAAGTGTCGGTGACAG
i panTro4.chr3             C 0 I 815
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=1093.000000
s hg38.chr3_KI270935v1_alt    150650 14 +    197351 GAAGAGGGGTGGTT
s panTro4.chr3             199794885 14 + 202329955 GAAGAGGGGTGATC
i panTro4.chr3             I 815 T 285
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=0.000000
s hg38.chr3_KI270935v1_alt    150664 5 +    197351 GTCAC
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M
e panTro4.chr3             199794899 285 + 202329955 T

a score=100.000000
s hg38.chr3_KI270935v1_alt    150669 1 +    197351 C
s panTro4.chr3             199794614 1 + 202329955 C
i panTro4.chr3             T 285 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=18237.000000
s hg38.chr3_KI270935v1_alt    150670 44 +    197351 CTGTGGATGCTGAGGAAGTGCTGGTGACAGGAAGAGCGGTGGCG
s panTro4.chr3             199794615 44 + 202329955 CTGTGGATACTGAGGAAGGGCTGGTGACAGGAAGAGGGGTGGCG
i panTro4.chr3             C 0 I 240
s macFas5.chr2                 98640 44 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCG
i macFas5.chr2             T 56 C 0
s papAnu2.chr2                 86483 44 - 187378091 CTGTGGATGCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCA
i papAnu2.chr2             T 56 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=5302.000000
s hg38.chr3_KI270935v1_alt    150714 12 +    197351 TGACCTGTGGAT
s panTro4.chr3             199794899 12 + 202329955 TCACCTGTGGAT
i panTro4.chr3             I 240 C 0
s macFas5.chr2                 98684 12 + 192460366 TGACCTGTGAAT
i macFas5.chr2             C 0 T 48
s papAnu2.chr2                 86527 12 - 187378091 TGACCTGTGAGT
i papAnu2.chr2             C 0 T 56
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=9160.000000
s hg38.chr3_KI270935v1_alt    150726 48 +    197351 GCTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGTGTGACCTGTGGAT
s panTro4.chr3             199794911 48 + 202329955 GCTGAGGAAGGGCTGGTGACAGGAAGAGACGTGGTGTCACCTCTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98648 48 + 192460366 GCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAAT
i macFas5.chr2             T 48 T 56
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=3033.000000
s hg38.chr3_KI270935v1_alt    150774 40 +    197351 GCTGAGGAAGGGCTAGTGACAGGAAGAGGCGTGGTGTCAC
s panTro4.chr3             199794959 40 + 202329955 ACTGAGGAAGTGTTGGTGACAGGAAGAGGGGTGGTGTCAC
i panTro4.chr3             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=24074.000000
s hg38.chr3_KI270935v1_alt    150814 56 +    197351 CTGTGGATACTGAGGAAAGGCTGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGAT
s panTro4.chr3             199794999 56 + 202329955 CTGTGGATACTGAGGAAGGGCTGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 56 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAAT
i macFas5.chr2             T 56 T 54
s papAnu2.chr2                 86483 56 - 187378091 CTGTGGATGCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGACCTGTGAGT
i papAnu2.chr2             T 56 T 56
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=10728.000000
s hg38.chr3_KI270935v1_alt    150870 138 +    197351 GCTGAGGAAGTGTCGGTGACAGGAAGCGGGGTGGCGTGACCGGTGGATGCTGAGGAAGGGCTGGTGACATGAAGAGGGTTGGCGTGACCTGTGGATGCTGAGGAAGTGTCGGTGACAGGAAGCGGGGTGGCGTGACTG
s panTro4.chr3             199795055 138 + 202329955 ACTGAGGAAGCGTCGGTGACAGGAAGAGGGTTGGCGTGACCTGTGGATGCTGAGGAAGGGTTGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGATACTGAGGAAGTATCGGTGACAGGAAGAGGGGTGGTGTCACCT
i panTro4.chr3             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069  55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696  54 + 192460366 T
e papAnu2.chr2                 86539  56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=5459.000000
s hg38.chr3_KI270935v1_alt    151008 28 +    197351 GTGGATGCTGAGGAAGGGCTGGTGACAT
s panTro4.chr3             199795193 28 + 202329955 GTGGATGCTGAGGAAGAGATGGTGACAG
i panTro4.chr3             C 0 T 624
s macFas5.chr2                 98642 28 + 192460366 GTGGATGCTGAGAAAGCACCCGTGACAG
i macFas5.chr2             T 54 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=3836.000000
s hg38.chr3_KI270935v1_alt    151036 18 +    197351 GAAGAGGGGTGGCGTGAC
s panTro4.chr3             199794597 18 + 202329955 GAAGAGGGGTGGTGTCAC
i panTro4.chr3             T 624 C 0
s macFas5.chr2                 98670 18 + 192460366 GAAGAGTGGTAGCGTGAC
i macFas5.chr2             C 0 T 48
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=10650.000000
s hg38.chr3_KI270935v1_alt    151054 48 +    197351 CTGTGGATATTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGCGTGAC
s panTro4.chr3             199794615 48 + 202329955 CTGTGGATACTGAGGAAGGGCTGGTGACAGGAAGAGGGGTGGCGTGAC
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 48 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGAC
i macFas5.chr2             T 48 T 48
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=10246.000000
s hg38.chr3_KI270935v1_alt    151102 48 +    197351 CTATGGATGCTGAGGAAGTGTCGGTGACAGGAAGAAGGGTGGCGTGAC
s panTro4.chr3             199794663 48 + 202329955 CTGTGGATACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGTGTCAC
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 48 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGAC
i macFas5.chr2             T 48 T 48
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=23147.000000
s hg38.chr3_KI270935v1_alt    151150 56 +    197351 CTGTGGATGCTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGAT
s panTro4.chr3             199794711 56 + 202329955 CTGTGGATACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGATGTCACCTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 56 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAAT
i macFas5.chr2             T 48 T 48
s papAnu2.chr2                 86483 56 - 187378091 CTGTGGATGCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGACCTGTGAGT
i papAnu2.chr2             T 56 T 56
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=6899.000000
s hg38.chr3_KI270935v1_alt    151206 40 +    197351 GCTGAGGAAGTGTCGGTGTCAGGAAGAGGGGTGGCGTGAC
s panTro4.chr3             199794767 40 + 202329955 GCTGAGGAAGGGCTGGTGACAGGAAGAGACGTGATGTCAC
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98648 40 + 192460366 GCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGAC
i macFas5.chr2             T 48 T 48
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=11791.000000
s hg38.chr3_KI270935v1_alt    151246 56 +    197351 CTGTGGATGCTGAGGAAGTGTCGGTGACAGGAAGAGAGGTGGCGTGACCTGTGGAT
s panTro4.chr3             199794807 56 + 202329955 CGCTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGTGTCACCTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 56 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAAT
i macFas5.chr2             T 48 T 56
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=10594.000000
s hg38.chr3_KI270935v1_alt    151302 136 +    197351 GCTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGTGTCACCTGTGGATACTGAGGAAAGGCTGGTGACAGGAAGAGGGGTGGCCTGACCTGTGGATGCTGAGGAAGTGTCGGTGACAGGAAGAGGCGTGGTGTCAC
s panTro4.chr3             199794863 136 + 202329955 ACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGATCTCACCTGTGGATGCTGAGGAAGGGCTGGTGACAGGAAGAGACGTGGTGTCACCTCTGGATACTGAGGAAGTGTTGGTGACAGGAAGAGGGGTGGTGTCAC
i panTro4.chr3             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069  55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696  56 + 192460366 T
e papAnu2.chr2                 86539  56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=10564.000000
s hg38.chr3_KI270935v1_alt    151438 48 +    197351 CTGTGGATACTGAGGAAAGGCTGGTGAGAGGAAGAGGGGTAGCGTGAC
s panTro4.chr3             199794999 48 + 202329955 CTGTGGATACTGAGGAAGGGCTGGTGACAGGAAGAGGGGTGGCGTGAC
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 48 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGAC
i macFas5.chr2             T 56 T 48
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=11063.000000
s hg38.chr3_KI270935v1_alt    151486 48 +    197351 CTGTGGACACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGCGTGAC
s panTro4.chr3             199795047 48 + 202329955 CTGTGGATACTGAGGAAGCGTCGGTGACAGGAAGAGGGTTGGCGTGAC
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 48 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGAC
i macFas5.chr2             T 48 T 48
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=12707.000000
s hg38.chr3_KI270935v1_alt    151534 57 +    197351 CTGTGGACACTGAGGAAGCGTCGGTGACAGGAAGAGAGGTGGCGTGACCTGTGGACA
s panTro4.chr3             199795095 57 + 202329955 CTGTGGATGCTGAGGAAGGGTTGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGATA
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 57 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAATA
i macFas5.chr2             T 48 T 48
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=8422.000000
s hg38.chr3_KI270935v1_alt    151591 39 +    197351 CTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGTGTGAC
s panTro4.chr3             199795152 39 + 202329955 CTGAGGAAGTATCGGTGACAGGAAGAGGGGTGGTGTCAC
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98649 39 + 192460366 CTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGAC
i macFas5.chr2             T 48 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=4191.000000
s hg38.chr3_KI270935v1_alt    151630 8 +    197351 CTGTGGAT
s panTro4.chr3             199795191 8 + 202329955 CTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98688 8 + 192460366 CTGTGAAT
i macFas5.chr2             C 0 T 48
s papAnu2.chr2                 86483 8 - 187378091 CTGTGGAT
i papAnu2.chr2             T 56 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=14945.000000
s hg38.chr3_KI270935v1_alt    151638 40 +    197351 GCTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGAC
s panTro4.chr3             199795199 40 + 202329955 GCTGAGGAAGAGATGGTGACAGGAAGAGGGGTGGTGTGAC
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98648 40 + 192460366 GCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGAC
i macFas5.chr2             T 48 T 48
s papAnu2.chr2                 86491 40 - 187378091 GCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGAC
i papAnu2.chr2             C 0 T 48
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=23260.000000
s hg38.chr3_KI270935v1_alt    151678 56 +    197351 CTGTGGATACTGAGGAAGTGTTGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGAT
s panTro4.chr3             199795239 56 + 202329955 CTGTGGATACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGTGTCACCTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 56 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAAT
i macFas5.chr2             T 48 T 56
s papAnu2.chr2                 86483 56 - 187378091 CTGTGGATGCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGACCTGTGAGT
i papAnu2.chr2             T 48 T 56
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=3472.000000
s hg38.chr3_KI270935v1_alt    151734 40 +    197351 GCTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGTGTCAC
s panTro4.chr3             199795295 40 + 202329955 ACTGAGGAAGCGTCGGTGACAGGAAGAGAGGTGGTGTCAC
i panTro4.chr3             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=37657.000000
s hg38.chr3_KI270935v1_alt    151774 55 +    197351 CTGTGGATGCTGAGGAAGTGCTGGTGACAGGAAGAGGGGTGGCATGACCTGTGGA
s panTro4.chr3             199795335 55 + 202329955 CTGTGGATACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGA
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 55 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAA
i macFas5.chr2             T 56 C 0
s papAnu2.chr2                 86483 55 - 187378091 CTGTGGATGCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGACCTGTGAG
i papAnu2.chr2             T 56 C 0
s calJac3.chr17               957014 55 -  74750902 CTGTGGGTGCCGAGGCGGTGCTGGTGACAGCAAGAGGGGCCGCGTGGCCTGTGGA
i calJac3.chr17            T 55 T 59
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=1092.000000
s hg38.chr3_KI270935v1_alt    151829 2 +    197351 TA
s panTro4.chr3             199795390 2 + 202329955 TA
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98695 2 + 192460366 TA
i macFas5.chr2             C 0 T 48
s papAnu2.chr2                 86538 2 - 187378091 TA
i papAnu2.chr2             C 0 T 57
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 59 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=8391.000000
s hg38.chr3_KI270935v1_alt    151831 37 +    197351 CTGAGGAAGCGTCGGTGACAGGAACAGGGGTGGCGTG
s panTro4.chr3             199795392 37 + 202329955 CTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGCGTG
i panTro4.chr3             C 0 T 1152
s macFas5.chr2                 98649 37 + 192460366 CTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTG
i macFas5.chr2             T 48 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 59 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=2603.000000
s hg38.chr3_KI270935v1_alt    151868 10 +    197351 ACCTGTGGAT
s panTro4.chr3             199794277 10 + 202329955 ACCTGTGGAT
i panTro4.chr3             T 1152 C 0
s macFas5.chr2                 98686 10 + 192460366 ACCTGTGAAT
i macFas5.chr2             C 0 T 56
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 59 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=2142.000000
s hg38.chr3_KI270935v1_alt    151878 28 +    197351 GCTGAGGAAGGGCTGGTGACATGAAGAG
s panTro4.chr3             199794287 28 + 202329955 GCTGAGGAAGAGATGGTGACAGGAAGAG
i panTro4.chr3             C 0 I 157
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 59 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=0.000000
s hg38.chr3_KI270935v1_alt    151906 9 +    197351 GGGTGGCAT
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 59 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M
e panTro4.chr3             199794315 157 + 202329955 I

a score=177.000000
s hg38.chr3_KI270935v1_alt    151915 4 +    197351 GACC
s calJac3.chr17               957010 4 -  74750902 GACA
i calJac3.chr17            T 59 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M
e panTro4.chr3             199794315 157 + 202329955 I

a score=600.000000
s hg38.chr3_KI270935v1_alt    151919 1 +    197351 C
s macFas5.chr2                 98640 1 + 192460366 C
i macFas5.chr2             T 56 C 0
s papAnu2.chr2                 86483 1 - 187378091 C
i papAnu2.chr2             T 57 C 0
s calJac3.chr17               957014 1 -  74750902 C
i calJac3.chr17            C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M
e panTro4.chr3             199794315 157 + 202329955 I

a score=29427.000000
s hg38.chr3_KI270935v1_alt    151920 47 +    197351 TGTGGATGCTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGCGTGAC
s panTro4.chr3             199794472 47 + 202329955 TGTGGATACTGAGGGAGCGTCGGTGACAGGAAGAGGGGTGGTGTCAC
i panTro4.chr3             I 157 C 0
s macFas5.chr2                 98641 47 + 192460366 TGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGAC
i macFas5.chr2             C 0 T 48
s papAnu2.chr2                 86484 47 - 187378091 TGTGGATGCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGAC
i papAnu2.chr2             C 0 C 0
s calJac3.chr17               957015 47 -  74750902 TGTGGGTGCCGAGGCGGTGCTGGTGACAGCAAGAGGGGCCGCGTGGC
i calJac3.chr17            C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=5718.000000
s hg38.chr3_KI270935v1_alt    151967 7 +    197351 CTGTGGA
s panTro4.chr3             199794519 7 + 202329955 CTGTGGA
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 7 + 192460366 CTGTGGA
i macFas5.chr2             T 48 C 0
s papAnu2.chr2                 86531 7 - 187378091 CTGTGAG
i papAnu2.chr2             C 0 C 0
s calJac3.chr17               957062 7 -  74750902 CTGTGGA
i calJac3.chr17            C 0 T 55
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=546.000000
s hg38.chr3_KI270935v1_alt    151974 1 +    197351 T
s panTro4.chr3             199794526 1 + 202329955 T
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98647 1 + 192460366 T
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                 86538 1 - 187378091 T
i papAnu2.chr2             C 0 T 56
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=2494.000000
s hg38.chr3_KI270935v1_alt    151975 15 +    197351 GCTGAGGAAGTGTCA
s panTro4.chr3             199794527 15 + 202329955 ACTGAGGAAGTGTCG
i panTro4.chr3             C 0 T 144
s macFas5.chr2                 98648 15 + 192460366 GCTGAGAAAGCACCC
i macFas5.chr2             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=5828.000000
s hg38.chr3_KI270935v1_alt    151990 25 +    197351 GTGACAGGAAGAGAGGTGGCGTGAC
s panTro4.chr3             199794398 25 + 202329955 GTGACAGGAAGAGAGGTGGTGTCAC
i panTro4.chr3             T 144 C 0
s macFas5.chr2                 98663 25 + 192460366 GTGACAGGAAGAGTGGTAGCGTGAC
i macFas5.chr2             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=4191.000000
s hg38.chr3_KI270935v1_alt    152015 8 +    197351 CTGTGGAT
s panTro4.chr3             199794423 8 + 202329955 CTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98688 8 + 192460366 CTGTGAAT
i macFas5.chr2             C 0 T 48
s papAnu2.chr2                 86483 8 - 187378091 CTGTGGAT
i papAnu2.chr2             T 56 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=15020.000000
s hg38.chr3_KI270935v1_alt    152023 40 +    197351 GCTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGCGTGAC
s panTro4.chr3             199794431 40 + 202329955 ACTGAGGAAGCGTCGGTGACAGAAAGAGGGGTGGTGTCAC
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98648 40 + 192460366 GCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGAC
i macFas5.chr2             T 48 T 48
s papAnu2.chr2                 86491 40 - 187378091 GCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGAC
i papAnu2.chr2             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=3825.000000
s hg38.chr3_KI270935v1_alt    152063 8 +    197351 CTGTGGAT
s panTro4.chr3             199794471 8 + 202329955 CTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 8 + 192460366 CTGTGGAT
i macFas5.chr2             T 48 C 0
s papAnu2.chr2                 86531 8 - 187378091 CTGTGAGT
i papAnu2.chr2             C 0 T 56
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=10004.000000
s hg38.chr3_KI270935v1_alt    152071 48 +    197351 GCTGAGGAAGTGTCAGTGACAGGAAGAGAGGTGGCGTGACCTGTGGAT
s panTro4.chr3             199794479 48 + 202329955 ACTGAGGGAGCGTCGGTGACAGGAAGAGGGGTGGTGTCACCTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98648 48 + 192460366 GCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAAT
i macFas5.chr2             C 0 T 56
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=7267.000000
s hg38.chr3_KI270935v1_alt    152119 88 +    197351 GCTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGGGCTGGTGACAGGAAGAGGGGTGGTGTCAC
s panTro4.chr3             199794527 88 + 202329955 ACTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGATACTGAGGAAGCATCGGTGACAGGAAGAGGGGTGGTGTCAC
i panTro4.chr3             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=10025.000000
s hg38.chr3_KI270935v1_alt    152207 48 +    197351 CTGTGGATAATGAGGAAGCATCGGTGACATGAAGAGCGGTGGCGTGAC
s panTro4.chr3             199794615 48 + 202329955 CTGTGGATACTGAGGAAGGGCTGGTGACAGGAAGAGGGGTGGCGTGAC
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 48 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGAC
i macFas5.chr2             T 56 T 48
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=6925.000000
s hg38.chr3_KI270935v1_alt    152255 30 +    197351 CTGTGGATACTGAGGAAGCGTCGGTGACAA
s panTro4.chr3             199794663 30 + 202329955 CTGTGGATACTGAGGAAGCGTCGGTGACAG
i panTro4.chr3             C 0 I 96
s macFas5.chr2                 98640 30 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAG
i macFas5.chr2             T 48 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=4540.000000
s hg38.chr3_KI270935v1_alt    152285 27 +    197351 GAAGAGAGGTGGCGTGACCTGTGGATA
s panTro4.chr3             199794789 27 + 202329955 GAAGAGACGTGATGTCACCGCTGGATA
i panTro4.chr3             I 96 C 0
s macFas5.chr2                 98670 27 + 192460366 GAAGAGTGGTAGCGTGACCTGTGAATA
i macFas5.chr2             C 0 T 48
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=10199.000000
s hg38.chr3_KI270935v1_alt    152312 47 +    197351 CTGAGGAAGCGTCGGTGACAAGAAGAGGGGTGGTGTGACCTGTGGAT
s panTro4.chr3             199794816 47 + 202329955 CTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGTGTCACCTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98649 47 + 192460366 CTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAAT
i macFas5.chr2             T 48 T 56
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=2353.000000
s hg38.chr3_KI270935v1_alt    152359 38 +    197351 GCTGAGGAAGGGCTAGTGACAGGAAGAGGCGTGGTGTC
s panTro4.chr3             199794863 38 + 202329955 ACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGATCTC
i panTro4.chr3             C 0 I 379
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=0.000000
s hg38.chr3_KI270935v1_alt    152397 43 +    197351 ACCTGTGGATACTGAGGAAAGGCTGGTGACAGGAAGAGGGGTG
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M
e panTro4.chr3             199794901 379 + 202329955 I

a score=2609.000000
s hg38.chr3_KI270935v1_alt    152440 45 +    197351 TCCTGACCTGTGGATGCTGAGGAAGTATCGGTGACAGGAAGCGGT
s panTro4.chr3             199795280 45 + 202329955 GTGTCACCTGTGGATACTGAGGAAGCGTCGGTGACAGGAAGAGAG
i panTro4.chr3             I 379 T 1181
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=0.000000
s hg38.chr3_KI270935v1_alt    152485 22 +    197351 GTGGTGTCACCAGTGGATGATG
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M
e panTro4.chr3             199795325 1181 + 202329955 T

a score=2951.000000
s hg38.chr3_KI270935v1_alt    152507 39 +    197351 CTGAGGAAAGGCTGGTGACAGGAAGAGGGGTGGCGTGAC
s panTro4.chr3             199794144 39 + 202329955 CTGAGGAAGCGTCGGTGACAGGAAGAGGGTTGGCGTGAC
i panTro4.chr3             T 1181 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=19907.000000
s hg38.chr3_KI270935v1_alt    152546 31 +    197351 CTGTGGATGCTGAGGAAGGGCTGGTGACAGT
s panTro4.chr3             199794183 31 + 202329955 CTGTGGATGCTGAGGAAGGGCTGGTGACAGG
i panTro4.chr3             C 0 T 144
s macFas5.chr2                 98640 31 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGG
i macFas5.chr2             T 56 C 0
s papAnu2.chr2                 86483 31 - 187378091 CTGTGGATGCTGAGGATGCGCTGCTGACGGC
i papAnu2.chr2             T 56 C 0
s calJac3.chr17               957014 31 -  74750902 CTGTGGGTGCCGAGGCGGTGCTGGTGACAGC
i calJac3.chr17            T 55 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=11398.000000
s hg38.chr3_KI270935v1_alt    152577 17 +    197351 AAGAGGGGTGGCGTGAC
s panTro4.chr3             199794070 17 + 202329955 AAGAGGGGTGGTGTCAC
i panTro4.chr3             T 144 C 0
s macFas5.chr2                 98671 17 + 192460366 AAGAGTGGTAGCGTGAC
i macFas5.chr2             C 0 T 48
s papAnu2.chr2                 86514 17 - 187378091 AAGAGGGGTGGCATGAC
i papAnu2.chr2             C 0 C 0
s calJac3.chr17               957045 17 -  74750902 AAGAGGGGCCGCGTGGC
i calJac3.chr17            C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=5483.000000
s hg38.chr3_KI270935v1_alt    152594 7 +    197351 CTGTGGA
s panTro4.chr3             199794087 7 + 202329955 CTGTGGG
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 7 + 192460366 CTGTGGA
i macFas5.chr2             T 48 C 0
s papAnu2.chr2                 86531 7 - 187378091 CTGTGAG
i papAnu2.chr2             C 0 C 0
s calJac3.chr17               957062 7 -  74750902 CTGTGGA
i calJac3.chr17            C 0 T 55
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=726.000000
s hg38.chr3_KI270935v1_alt    152601 2 +    197351 TA
s panTro4.chr3             199794094 2 + 202329955 TA
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98647 2 + 192460366 TG
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                 86538 2 - 187378091 TA
i papAnu2.chr2             C 0 T 48
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=15890.000000
s hg38.chr3_KI270935v1_alt    152603 40 +    197351 CTGAGGAAGCATTGGTGACAGGAAGAGGGGTGGCCTGACC
s panTro4.chr3             199794096 40 + 202329955 CTGAGGAAGGGCTGGTGACAGGAAGAGGGGTGGCGTGACC
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98649 40 + 192460366 CTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACC
i macFas5.chr2             C 0 I 10
s papAnu2.chr2                 86492 40 - 187378091 CTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGACC
i papAnu2.chr2             T 48 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=1486.000000
s hg38.chr3_KI270935v1_alt    152643 7 +    197351 TGTGGAT
s panTro4.chr3             199794136 7 + 202329955 TGTGGAT
i panTro4.chr3             C 0 C 0
s papAnu2.chr2                 86532 7 - 187378091 TGTGAGT
i papAnu2.chr2             C 0 T 48
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98689 10 + 192460366 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=8068.000000
s hg38.chr3_KI270935v1_alt    152650 40 +    197351 GCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGAC
s panTro4.chr3             199794143 40 + 202329955 ACTGAGGAAGCGTCGGTGACAGGAAGAGGGTTGGCGTGAC
i panTro4.chr3             C 0 C 0
s papAnu2.chr2                 86491 40 - 187378091 GCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGAC
i papAnu2.chr2             T 48 T 48
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98689 10 + 192460366 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=20828.000000
s hg38.chr3_KI270935v1_alt    152690 48 +    197351 CTGTGGATGCTGAGGAAGGGCTGGTGACAGTAAGAGGGGTGGCGTGAC
s panTro4.chr3             199794183 48 + 202329955 CTGTGGATGCTGAGGAAGGGCTGGTGACAGGAAGAGGGGTGGCGTGAC
i panTro4.chr3             C 0 C 0
s papAnu2.chr2                 86483 48 - 187378091 CTGTGGATGCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGAC
i papAnu2.chr2             T 48 T 48
s calJac3.chr17               957014 48 -  74750902 CTGTGGGTGCCGAGGCGGTGCTGGTGACAGCAAGAGGGGCCGCGTGGC
i calJac3.chr17            T 55 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98689 10 + 192460366 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=4038.000000
s hg38.chr3_KI270935v1_alt    152738 7 +    197351 CTGTGGA
s panTro4.chr3             199794231 7 + 202329955 CTGTGGA
i panTro4.chr3             C 0 C 0
s papAnu2.chr2                 86483 7 - 187378091 CTGTGGA
i papAnu2.chr2             T 48 C 0
s calJac3.chr17               957062 7 -  74750902 CTGTGGA
i calJac3.chr17            C 0 T 55
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98689 10 + 192460366 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=6791.000000
s hg38.chr3_KI270935v1_alt    152745 37 +    197351 TGCTGAGGAAGCGCTGGTGACAGGAAGAGGGGTGGCC
s panTro4.chr3             199794238 37 + 202329955 TACTGAGGAAGTATCAGTGACAGGAAGAGGGGTGGTG
i panTro4.chr3             C 0 C 0
s papAnu2.chr2                 86490 37 - 187378091 TGCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCA
i papAnu2.chr2             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98689 10 + 192460366 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120910699 3534 + 123690457 M

a score=5442.000000
s hg38.chr3_KI270935v1_alt    152782 12 +    197351 TGACCTGTGGAT
s panTro4.chr3             199794275 12 + 202329955 TCACCTGTGGAT
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120914255 12 + 123690457 TGACCTGTGGAT
i nomLeu3.chr11            M 3534 C 0
s papAnu2.chr2                 86527 12 - 187378091 TGACCTGTGAGT
i papAnu2.chr2             C 0 T 56
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98689 10 + 192460366 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=300.000000
s hg38.chr3_KI270935v1_alt    152794 1 +    197351 G
s panTro4.chr3             199794287 1 + 202329955 G
i panTro4.chr3             C 0 T 218
s nomLeu3.chr11            120914267 1 + 123690457 G
i nomLeu3.chr11            C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98689 10 + 192460366 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=1783.000000
s hg38.chr3_KI270935v1_alt    152795 22 +    197351 CTGAGGAAGTGTCGGTGACAGG
s nomLeu3.chr11            120914268 22 + 123690457 CTGAGGACGTGTCAGTGACAGG
i nomLeu3.chr11            C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98689 10 + 192460366 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e panTro4.chr3             199794288 218 + 202329955 T

a score=15280.000000
s hg38.chr3_KI270935v1_alt    152817 65 +    197351 AAGAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGTGCTGGTGAGAGGAAGAGAGGTGGCGTGAC
s panTro4.chr3             199794070 65 + 202329955 AAGAGGGGTGGTGTCACCTGTGGGTACTGAGGAAGGGCTGGTGACAGGAAGAGGGGTGGCGTGAC
i panTro4.chr3             T 218 C 0
s nomLeu3.chr11            120914290 65 + 123690457 AAGAGGGGTGGTGTGACCTGTGGATGCTGAGGACGTGTCAGTGACAGGAAGAGGGGTGGTGTGAC
i nomLeu3.chr11            C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98689 10 + 192460366 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=12223.000000
s hg38.chr3_KI270935v1_alt    152882 17 +    197351 CTGTGGATGCTGAGGAA
s panTro4.chr3             199794135 17 + 202329955 CTGTGGATACTGAGGAA
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120914355 17 + 123690457 CTGTGGATGTTGAGGAA
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr2                 86483 17 - 187378091 CTGTGGATGCTGAGGAT
i papAnu2.chr2             T 56 C 0
s calJac3.chr17               957014 17 -  74750902 CTGTGGGTGCCGAGGCG
i calJac3.chr17            T 55 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98689 10 + 192460366 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=14684.000000
s hg38.chr3_KI270935v1_alt    152899 17 +    197351 GTGCTGGTGACAGGAAG
s panTro4.chr3             199794152 17 + 202329955 GCGTCGGTGACAGGAAG
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120914372 17 + 123690457 GTGCTGGTGACAGGAGG
i nomLeu3.chr11            C 0 C 0
s macFas5.chr2                 98699 17 + 192460366 GTGGTGGAGAAAGAAAG
i macFas5.chr2             I 10 T 76
s papAnu2.chr2                 86500 17 - 187378091 GCGCTGCTGACGGCAAG
i papAnu2.chr2             C 0 C 0
s calJac3.chr17               957031 17 -  74750902 GTGCTGGTGACAGCAAG
i calJac3.chr17            C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=15054.000000
s hg38.chr3_KI270935v1_alt    152916 21 +    197351 AGGGGTGGCGTGACCTGTGGA
s panTro4.chr3             199794169 21 + 202329955 AGGGTTGGCGTGACCTGTGGA
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120914389 21 + 123690457 AGAGGTGGTGTGACCTGTGGA
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr2                 86517 21 - 187378091 AGGGGTGGCATGACCTGTGAG
i papAnu2.chr2             C 0 C 0
s calJac3.chr17               957048 21 -  74750902 AGGGGCCGCGTGGCCTGTGGA
i calJac3.chr17            C 0 T 55
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98716 76 + 192460366 T
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=546.000000
s hg38.chr3_KI270935v1_alt    152937 1 +    197351 T
s panTro4.chr3             199794190 1 + 202329955 T
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120914410 1 + 123690457 T
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr2                 86538 1 - 187378091 T
i papAnu2.chr2             C 0 T 48
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98716 76 + 192460366 T
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=21458.000000
s hg38.chr3_KI270935v1_alt    152938 49 +    197351 GCTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGATA
s panTro4.chr3             199794191 49 + 202329955 GCTGAGGAAGGGCTGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGATA
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120914411 49 + 123690457 GCTGAGGACGTGTCAGTGACAGGAAGAGGGGTGGTGTGACCTGTGGATG
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr2                 86491 49 - 187378091 GCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGACCTGTGAGTA
i papAnu2.chr2             T 48 T 48
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98716 76 + 192460366 T
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=15290.000000
s hg38.chr3_KI270935v1_alt    152987 39 +    197351 CTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGCATGAC
s panTro4.chr3             199794240 39 + 202329955 CTGAGGAAGTATCAGTGACAGGAAGAGGGGTGGTGTCAC
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120914460 39 + 123690457 TTGAGGAAGTGCTGATGACAGGAAGAGAGGTGGTGTGAC
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr2                 86492 39 - 187378091 CTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGAC
i papAnu2.chr2             T 48 T 48
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98716 76 + 192460366 T
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=24802.000000
s hg38.chr3_KI270935v1_alt    153026 57 +    197351 CTGTGGATGCTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGATA
s panTro4.chr3             199794279 57 + 202329955 CTGTGGATGCTGAGGAAGAGATGGTGACAGGAAGAGGGGTGGTGTCACCTGTGGATG
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120914499 57 + 123690457 CTGTGGATGCTGAGGAAGTGTCACTGACAGGAAGAGGGGTGGTGTGACCTGTGGATG
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr2                 86483 57 - 187378091 CTGTGGATGCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGACCTGTGAGTA
i papAnu2.chr2             T 48 T 57
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98716 76 + 192460366 T
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=9522.000000
s hg38.chr3_KI270935v1_alt    153083 39 +    197351 CTGAGGAAGTGTCGGTGACAGGAAGAGAGGTGGCGTGAC
s panTro4.chr3             199794336 39 + 202329955 CTGAGGAAGAGATGGTGACAGGAAGAGGGGTGGTGTGAC
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120914556 39 + 123690457 CTGAGGAAGTGCTGGTGACAGGAAGAGGGGTGGTGTGAC
i nomLeu3.chr11            C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98716 76 + 192460366 T
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=25083.000000
s hg38.chr3_KI270935v1_alt    153122 56 +    197351 CTGTGGATGCTGAGGAAGTGCTGGTGACAGGAAGAGGGGTGGCCTGACCTGTGGAT
s panTro4.chr3             199794375 56 + 202329955 CTGTGGATACTGAGGAAGCGTCGGTGACAGGAAGAGAGGTGGTGTCACCTGTGGAT
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120914595 56 + 123690457 CTGTGGATGCTGAGGAAGCGCTGGTGACAGGAAGAGAGGTGGTGTGACCTGTGGAT
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr2                 86483 56 - 187378091 CTGTGGATGCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGACCTGTGAGT
i papAnu2.chr2             T 57 T 56
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98716 76 + 192460366 T
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=31111.000000
s hg38.chr3_KI270935v1_alt    153178 132 +    197351 GCTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGTGTCACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGTGTCACCTGTAGATGCTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGTG
s panTro4.chr3             199794431 132 + 202329955 ACTGAGGAAGCGTCGGTGACAGAAAGAGGGGTGGTGTCACCTGTGGATACTGAGGGAGCGTCGGTGACAGGAAGAGGGGTGGTGTCACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGCG
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120914651 132 + 123690457 GCTGAGGACGTGTCAGTGGCAGGAAGAGAACTGGTGTGACCTGTGGATGCTGAGGACGTGTCAGTGACAGGAAGAGAGGTGGTGTGACCTGTGGATGCTGAGGAAGTGCTGGTGACAGGAGGAGAGGTGGTG
i nomLeu3.chr11            C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069  55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98716  76 + 192460366 T
e papAnu2.chr2                 86539  56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=2603.000000
s hg38.chr3_KI270935v1_alt    153310 34 +    197351 TCACCTGTGGATAATGAGGAAGCATCGGTGACAT
s panTro4.chr3             199794563 34 + 202329955 TGACCTGTGGATACTGAGGAAGCATCGGTGACAG
i panTro4.chr3             C 0 I 304
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98716 76 + 192460366 T
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=0.000000
s hg38.chr3_KI270935v1_alt    153344 16 +    197351 GAAGAAGGGTGGCGTG
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98716 76 + 192460366 T
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C
e panTro4.chr3             199794597 304 + 202329955 I

a score=7951.000000
s hg38.chr3_KI270935v1_alt    153360 98 +    197351 ACCTGTGGATGCTGAGGAAGGGCTAGTGACAGGAAGAGGGGTGGTGTCATCTGTGGACACTGAGGAAGCGTCGGTGACAAGAAGAGAGGTGGTGTCAC
s panTro4.chr3             199794901 98 + 202329955 ACCTGTGGATGCTGAGGAAGGGCTGGTGACAGGAAGAGACGTGGTGTCACCTCTGGATACTGAGGAAGTGTTGGTGACAGGAAGAGGGGTGGTGTCAC
i panTro4.chr3             I 304 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98716 76 + 192460366 T
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=12977.000000
s hg38.chr3_KI270935v1_alt    153458 57 +    197351 CTGTGGATGCTGAGGAAGGGCTGGTGACAGGAAGAGGGGTGGCGTCACCTGTGGATA
s panTro4.chr3             199794999 57 + 202329955 CTGTGGATACTGAGGAAGGGCTGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGATA
i panTro4.chr3             C 0 C 0
s papAnu2.chr2                 86483 57 - 187378091 CTGTGGATGCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGACCTGTGAGTA
i papAnu2.chr2             T 56 T 57
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98716 76 + 192460366 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=6019.000000
s hg38.chr3_KI270935v1_alt    153515 87 +    197351 ATGAGGAAGGGCTAGTGTCAGGAAGAGGCGTGGTGTCACCTGTGGATGCTGAGGAAGGGCTGGTGACAGGCAGAGGGGTGGCCTGAC
s panTro4.chr3             199795056 87 + 202329955 CTGAGGAAGCGTCGGTGACAGGAAGAGGGTTGGCGTGACCTGTGGATGCTGAGGAAGGGTTGGTGACAGGAAGAGGGGTGGCGTGAC
i panTro4.chr3             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98716 76 + 192460366 T
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=12793.000000
s hg38.chr3_KI270935v1_alt    153602 57 +    197351 CTGTGGATGCTGAGGAAGCATCGGTGACAAGAAGAGGGGTGGTGTCACCTGTGGATA
s panTro4.chr3             199795143 57 + 202329955 CTGTGGATACTGAGGAAGTATCGGTGACAGGAAGAGGGGTGGTGTCACCTGTGGATG
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 57 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAATA
i macFas5.chr2             T 76 T 57
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=2839.000000
s hg38.chr3_KI270935v1_alt    153659 39 +    197351 CTGAGGAAAGGCTGGTGACAGGAAGAGGCGTGGTGTCAC
s panTro4.chr3             199795200 39 + 202329955 CTGAGGAAGAGATGGTGACAGGAAGAGGGGTGGTGTGAC
i panTro4.chr3             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957069 55 -  74750902 T
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98697 57 + 192460366 T
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=22527.000000
s hg38.chr3_KI270935v1_alt    153698 56 +    197351 CTGTGGATGCTGAGGAAGTGTCGGTGACAGGAAGAGGGGTAGCGTGACCTGTGGAC
s panTro4.chr3             199795239 56 + 202329955 CTGTGGATACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGTGTCACCTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 56 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAAT
i macFas5.chr2             T 57 C 0
s calJac3.chr17               957014 56 -  74750902 CTGTGGGTGCCGAGGCGGTGCTGGTGACAGCAAGAGGGGCCGCGTGGCCTGTGGAC
i calJac3.chr17            T 55 I 1047
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=273.000000
s hg38.chr3_KI270935v1_alt    153754 1 +    197351 A
s panTro4.chr3             199795295 1 + 202329955 A
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98696 1 + 192460366 A
i macFas5.chr2             C 0 T 57
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783 0 + 123690457 C

a score=3634.000000
s hg38.chr3_KI270935v1_alt    153755 39 +    197351 CTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGTGTCAC
s panTro4.chr3             199795296 39 + 202329955 CTGAGGAAGCGTCGGTGACAGGAAGAGAGGTGGTGTCAC
i panTro4.chr3             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98697 57 + 192460366 T
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=24366.000000
s hg38.chr3_KI270935v1_alt    153794 57 +    197351 CTGTGGACACTGAGGAAGGGCTGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGATA
s panTro4.chr3             199795335 57 + 202329955 CTGTGGATACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGATA
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 57 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAATA
i macFas5.chr2             T 57 T 48
s papAnu2.chr2                 86483 57 - 187378091 CTGTGGATGCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGACCTGTGAGTA
i papAnu2.chr2             T 57 T 57
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=8558.000000
s hg38.chr3_KI270935v1_alt    153851 39 +    197351 ATGAGGAAGCGTCGGTGACATGAAGAGGGGTGGCGTGAC
s panTro4.chr3             199795392 39 + 202329955 CTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGCGTGAC
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98649 39 + 192460366 CTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGAC
i macFas5.chr2             T 48 T 48
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=13487.000000
s hg38.chr3_KI270935v1_alt    153890 57 +    197351 CTGTGGATACTGAGGAAGCGTCGGTGACAAGAAGAGAGGTGGCGTGACCTGTGGATA
s panTro4.chr3             199795431 57 + 202329955 CTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGAGGTGGCGTGACCTGTGGATA
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 57 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAATA
i macFas5.chr2             T 48 T 48
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=10583.000000
s hg38.chr3_KI270935v1_alt    153947 47 +    197351 CTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGTGTGACCTGTGGAT
s panTro4.chr3             199795488 47 + 202329955 CTGAGGAAGCGTCGGTGACAGGAAGAGAGGTGGTGTCACCTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98649 47 + 192460366 CTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAAT
i macFas5.chr2             T 48 T 56
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=3481.000000
s hg38.chr3_KI270935v1_alt    153994 40 +    197351 GCTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGTGTCAC
s panTro4.chr3             199795535 40 + 202329955 ACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGCGTCAC
i panTro4.chr3             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=12159.000000
s hg38.chr3_KI270935v1_alt    154034 57 +    197351 CTGTGGATACTGAGGAAAGGCTGGTGACAGGAAGAGAGGTGGCGTGACCTGTGGACA
s panTro4.chr3             199795575 57 + 202329955 CTGTGGATACTGAGGAAGTGTCGGTGACCGGAAGAGGGGTGGCGTGACCTGTGGATA
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 57 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAATA
i macFas5.chr2             T 56 T 57
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=2931.000000
s hg38.chr3_KI270935v1_alt    154091 39 +    197351 CTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGCTGTCAC
s panTro4.chr3             199795632 39 + 202329955 TTGAAGAAGCGTCGGTGACAGGAAGAGGGGTGGCGTGAC
i panTro4.chr3             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98697 57 + 192460366 T
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=9333.000000
s hg38.chr3_KI270935v1_alt    154130 48 +    197351 CTGTGGATGCTGAGGAAAGGCTGGTGACAGGAAGAGGGGTGGCGTGTC
s panTro4.chr3             199795671 48 + 202329955 CTGTGGATACTGAGGAAGCTTCGGTGACAGGAAGAGGGGTGGTGTCAC
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 48 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGAC
i macFas5.chr2             T 57 T 48
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=8689.000000
s hg38.chr3_KI270935v1_alt    154178 48 +    197351 CTGTGGATGCTGAGGAAGTGTC-GGTGACAAGAAGAGGGGTGGCGTGAC
s panTro4.chr3             199795719 49 + 202329955 CTGTGGATACTGAGGAAGTGTCAAAAGACAGGAAGAGAGGTGGTGTCAC
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 48 + 192460366 CTGTGGATGCTGAGAAAGCACC-CGTGACAGGAAGAGTGGTAGCGTGAC
i macFas5.chr2             T 48 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=4191.000000
s hg38.chr3_KI270935v1_alt    154226 8 +    197351 CTGTGGAT
s panTro4.chr3             199795768 8 + 202329955 CTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98688 8 + 192460366 CTGTGAAT
i macFas5.chr2             C 0 T 48
s papAnu2.chr2                 86483 8 - 187378091 CTGTGGAT
i papAnu2.chr2             T 57 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783 0 + 123690457 C

a score=4356.000000
s hg38.chr3_KI270935v1_alt    154234 10 +    197351 GCTGAGGAAG
s panTro4.chr3             199795776 10 + 202329955 ACTGAGGAAG
i panTro4.chr3             C 0 T 817
s macFas5.chr2                 98648 10 + 192460366 GCTGAGAAAG
i macFas5.chr2             T 48 C 0
s papAnu2.chr2                 86491 10 - 187378091 GCTGAGGATG
i papAnu2.chr2             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=9962.000000
s hg38.chr3_KI270935v1_alt    154244 30 +    197351 GGCTGGTGACAGGAAGAGGGGTGGCCTGAC
s panTro4.chr3             199794969 30 + 202329955 TGTTGGTGACAGGAAGAGGGGTGGTGTCAC
i panTro4.chr3             T 817 C 0
s macFas5.chr2                 98658 30 + 192460366 CACCCGTGACAGGAAGAGTGGTAGCGTGAC
i macFas5.chr2             C 0 T 48
s papAnu2.chr2                 86501 30 - 187378091 CGCTGCTGACGGCAAGAGGGGTGGCATGAC
i papAnu2.chr2             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=3825.000000
s hg38.chr3_KI270935v1_alt    154274 8 +    197351 CTGTGGAT
s panTro4.chr3             199794999 8 + 202329955 CTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 8 + 192460366 CTGTGGAT
i macFas5.chr2             T 48 C 0
s papAnu2.chr2                 86531 8 - 187378091 CTGTGAGT
i papAnu2.chr2             C 0 T 48
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783 0 + 123690457 C

a score=15696.000000
s hg38.chr3_KI270935v1_alt    154282 40 +    197351 GCTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGAC
s panTro4.chr3             199795007 40 + 202329955 ACTGAGGAAGGGCTGGTGACAGGAAGAGGGGTGGCGTGAC
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98648 40 + 192460366 GCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGAC
i macFas5.chr2             C 0 T 48
s papAnu2.chr2                 86491 40 - 187378091 GCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGAC
i papAnu2.chr2             T 48 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=3825.000000
s hg38.chr3_KI270935v1_alt    154322 8 +    197351 CTGTGGAT
s panTro4.chr3             199795047 8 + 202329955 CTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 8 + 192460366 CTGTGGAT
i macFas5.chr2             T 48 C 0
s papAnu2.chr2                 86531 8 - 187378091 CTGTGAGT
i papAnu2.chr2             C 0 T 56
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783 0 + 123690457 C

a score=10390.000000
s hg38.chr3_KI270935v1_alt    154330 48 +    197351 GCTGAGGAAGTGTCGGTGACAGGAAGAGAGGTGGCGTGACTTGTGGAT
s panTro4.chr3             199795055 48 + 202329955 ACTGAGGAAGCGTCGGTGACAGGAAGAGGGTTGGCGTGACCTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98648 48 + 192460366 GCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAAT
i macFas5.chr2             C 0 T 48
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=10801.000000
s hg38.chr3_KI270935v1_alt    154378 49 +    197351 GCTGAGGAAGTGTCGGTGACAGGAAGAGAGGTGGCGTGGCCTGTGGATA
s panTro4.chr3             199795103 49 + 202329955 GCTGAGGAAGGGTTGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGATA
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98648 49 + 192460366 GCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAATA
i macFas5.chr2             T 48 T 57
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=7684.000000
s hg38.chr3_KI270935v1_alt    154427 87 +    197351 CTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGGGCTGGTGACAGGAAGAGGGGTGGTGTCAC
s panTro4.chr3             199795152 87 + 202329955 CTGAGGAAGTATCGGTGACAGGAAGAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGAGATGGTGACAGGAAGAGGGGTGGTGTGAC
i panTro4.chr3             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98697 57 + 192460366 T
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=10158.000000
s hg38.chr3_KI270935v1_alt    154514 48 +    197351 CTGTGGATAATGAGGAAGCATCGGTGACATGAAGAGGGGTGGCGTGAC
s panTro4.chr3             199795239 48 + 202329955 CTGTGGATACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGTGTCAC
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 48 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGAC
i macFas5.chr2             T 57 T 48
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=12775.000000
s hg38.chr3_KI270935v1_alt    154562 57 +    197351 CTGTGGATACTGAGGAAGCGTCGGTGACAAGAAGAGAGGTGGCGTGACCTGTAGATA
s panTro4.chr3             199795287 57 + 202329955 CTGTGGATACTGAGGAAGCGTCGGTGACAGGAAGAGAGGTGGTGTCACCTGTGGATA
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 57 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAATA
i macFas5.chr2             T 48 T 48
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=9152.000000
s hg38.chr3_KI270935v1_alt    154619 39 +    197351 CTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGCGTGAC
s panTro4.chr3             199795344 39 + 202329955 CTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGCGTGAC
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98649 39 + 192460366 CTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGAC
i macFas5.chr2             T 48 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=4191.000000
s hg38.chr3_KI270935v1_alt    154658 8 +    197351 CTGTGGAT
s panTro4.chr3             199795383 8 + 202329955 CTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98688 8 + 192460366 CTGTGAAT
i macFas5.chr2             C 0 T 48
s papAnu2.chr2                 86483 8 - 187378091 CTGTGGAT
i papAnu2.chr2             T 56 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783 0 + 123690457 C

a score=15917.000000
s hg38.chr3_KI270935v1_alt    154666 40 +    197351 GCTGAGGAAGGGCTGGTGACAGGAAGAGGGGTGGCATGAC
s panTro4.chr3             199795391 40 + 202329955 ACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGCGTGAC
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98648 40 + 192460366 GCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGAC
i macFas5.chr2             T 48 T 48
s papAnu2.chr2                 86491 40 - 187378091 GCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGAC
i papAnu2.chr2             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=2892.000000
s hg38.chr3_KI270935v1_alt    154706 5 +    197351 CTGTG
s panTro4.chr3             199795431 5 + 202329955 CTGTG
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 5 + 192460366 CTGTG
i macFas5.chr2             T 48 C 0
s papAnu2.chr2                 86531 5 - 187378091 CTGTG
i papAnu2.chr2             C 0 T 53
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783 0 + 123690457 C

a score=9643.000000
s hg38.chr3_KI270935v1_alt    154711 43 +    197351 GACACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGCGTGAC
s panTro4.chr3             199795436 43 + 202329955 GATACTGAGGAAGTGTCGGTGACAGGAAGAGAGGTGGCGTGAC
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98645 43 + 192460366 GATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGAC
i macFas5.chr2             C 0 T 48
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86536 53 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=23571.000000
s hg38.chr3_KI270935v1_alt    154754 57 +    197351 CTGTGGACACTGAGGAAGCGTCGGTGACAGGAAGAGAGGTGGCGTGACCTGTGGGTA
s panTro4.chr3             199795479 57 + 202329955 CTGTGGATACTGAGGAAGCGTCGGTGACAGGAAGAGAGGTGGTGTCACCTGTGGATA
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 57 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAATA
i macFas5.chr2             T 48 T 48
s papAnu2.chr2                 86483 57 - 187378091 CTGTGGATGCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGACCTGTGAGTA
i papAnu2.chr2             T 53 T 57
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=10304.000000
s hg38.chr3_KI270935v1_alt    154811 47 +    197351 CTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGTGTGACCTGAGGAT
s panTro4.chr3             199795536 47 + 202329955 CTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGCGTCACCTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98649 47 + 192460366 CTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAAT
i macFas5.chr2             T 48 T 56
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=2848.000000
s hg38.chr3_KI270935v1_alt    154858 40 +    197351 GCTGAGGAAGGGATGGTGACAGGAAGAGAGGTGGCGTGAC
s panTro4.chr3             199795583 40 + 202329955 ACTGAGGAAGTGTCGGTGACCGGAAGAGGGGTGGCGTGAC
i panTro4.chr3             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=11127.000000
s hg38.chr3_KI270935v1_alt    154898 49 +    197351 CTGTGGACACTGAGGAAGCGTCGGTGACAGGAAGAGAGGTGGCGTGACC
s panTro4.chr3             199795623 49 + 202329955 CTGTGGATATTGAAGAAGCGTCGGTGACAGGAAGAGGGGTGGCGTGACC
i panTro4.chr3             C 0 T 96
s macFas5.chr2                 98640 49 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACC
i macFas5.chr2             T 56 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=573.000000
s hg38.chr3_KI270935v1_alt    154947 2 +    197351 TG
s panTro4.chr3             199795576 2 + 202329955 TG
i panTro4.chr3             T 96 C 0
s macFas5.chr2                 98689 2 + 192460366 TG
i macFas5.chr2             C 0 T 51
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783 0 + 123690457 C

a score=2618.000000
s hg38.chr3_KI270935v1_alt    154949 45 +    197351 AGGATGCTGAGGAAGGGCTAGTGACAGGAAGAGGCGTGGTGTCAC
s panTro4.chr3             199795578 45 + 202329955 TGGATACTGAGGAAGTGTCGGTGACCGGAAGAGGGGTGGCGTGAC
i panTro4.chr3             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98691 51 + 192460366 T
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=23051.000000
s hg38.chr3_KI270935v1_alt    154994 57 +    197351 CTGTGGATGCTGAGGAAAGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATA
s panTro4.chr3             199795623 57 + 202329955 CTGTGGATATTGAAGAAGCGTCGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGATA
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 57 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAATA
i macFas5.chr2             T 51 T 57
s papAnu2.chr2                 86483 57 - 187378091 CTGTGGATGCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGACCTGTGAGTA
i papAnu2.chr2             T 57 T 57
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=5316.000000
s hg38.chr3_KI270935v1_alt    155051 61 +    197351 CTGAGGAAGCGTCGGTGACATGAAGAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGTGTC
s panTro4.chr3             199795680 61 + 202329955 CTGAGGAAGCTTCGGTGACAGGAAGAGGGGTGGTGTCACCTGTGGATACTGAGGAAGTGTC
i panTro4.chr3             C 0 T 312
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98697 57 + 192460366 T
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=0.000000
s hg38.chr3_KI270935v1_alt    155112 24 +    197351 GGTGACAGGAAGAGGGGTGGTGTC
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98697 57 + 192460366 T
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C
e panTro4.chr3             199795741 312 + 202329955 T

a score=191.000000
s hg38.chr3_KI270935v1_alt    155136 2 +    197351 AC
s panTro4.chr3             199795429 2 + 202329955 AC
i panTro4.chr3             T 312 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98697 57 + 192460366 T
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783 0 + 123690457 C

a score=13243.000000
s hg38.chr3_KI270935v1_alt    155138 57 +    197351 CTGTGGATACTGAGGAAGCGTCGGTGACAAGAAGAGAGGTGGCGTGACCTGTGGACA
s panTro4.chr3             199795431 57 + 202329955 CTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGAGGTGGCGTGACCTGTGGATA
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 57 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAATA
i macFas5.chr2             T 57 T 48
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=10006.000000
s hg38.chr3_KI270935v1_alt    155195 47 +    197351 CTGAGGAAGCGTCGGTGACAGGAAGAGAGGTGGTGTGACCTGAAGAT
s panTro4.chr3             199795488 47 + 202329955 CTGAGGAAGCGTCGGTGACAGGAAGAGAGGTGGTGTCACCTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98649 47 + 192460366 CTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAAT
i macFas5.chr2             T 48 T 56
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=2911.000000
s hg38.chr3_KI270935v1_alt    155242 40 +    197351 GCTGAGGAAGGGATGGTGACAGGAAGAGAGGTGGTGTCAC
s panTro4.chr3             199795535 40 + 202329955 ACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGCGTCAC
i panTro4.chr3             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=10360.000000
s hg38.chr3_KI270935v1_alt    155282 48 +    197351 CTGTGGATGCTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGTGTCAC
s panTro4.chr3             199795575 48 + 202329955 CTGTGGATACTGAGGAAGTGTCGGTGACCGGAAGAGGGGTGGCGTGAC
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 48 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGAC
i macFas5.chr2             T 56 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=4191.000000
s hg38.chr3_KI270935v1_alt    155330 8 +    197351 CTGTGGAT
s panTro4.chr3             199795623 8 + 202329955 CTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98688 8 + 192460366 CTGTGAAT
i macFas5.chr2             C 0 T 56
s papAnu2.chr2                 86483 8 - 187378091 CTGTGGAT
i papAnu2.chr2             T 57 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783 0 + 123690457 C

a score=9262.000000
s hg38.chr3_KI270935v1_alt    155338 48 +    197351 GCTGAGGAAGGGCTGGTGACAGGAAGAGGGATGGCCTGACCTGTGGAT
s panTro4.chr3             199795631 48 + 202329955 ATTGAAGAAGCGTCGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGAT
i panTro4.chr3             C 0 C 0
s papAnu2.chr2                 86491 48 - 187378091 GCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGACCTGTGAGT
i papAnu2.chr2             C 0 T 54
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=4194.000000
s hg38.chr3_KI270935v1_alt    155386 57 +    197351 GCCGAGGAAACGTCGGTGACAGGAAGACGGGTGGTGTCATCTGTGGAAGCTGAGGAA
s panTro4.chr3             199795679 57 + 202329955 ACTGAGGAAGCTTCGGTGACAGGAAGAGGGGTGGTGTCACCTGTGGATACTGAGGAA
i panTro4.chr3             C 0 T 1536
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86539 54 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=2318.000000
s hg38.chr3_KI270935v1_alt    155443 31 +    197351 AGGCCGGTGACAGGAAGTGGGGTGGCGTGAG
s panTro4.chr3             199794200 31 + 202329955 GGGCTGGTGACAGGAAGAGGGGTGGCGTGAC
i panTro4.chr3             T 1536 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86539 54 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=9477.000000
s hg38.chr3_KI270935v1_alt    155474 44 +    197351 CTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGCC
s panTro4.chr3             199794231 44 + 202329955 CTGTGGATACTGAGGAAGTATCAGTGACAGGAAGAGGGGTGGTG
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 44 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCG
i macFas5.chr2             T 56 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 54 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914783  0 + 123690457 C

a score=1617.000000
s hg38.chr3_KI270935v1_alt    155518 4 +    197351 TGAC
s panTro4.chr3             199794275 4 + 202329955 TCAC
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120914783 4 + 123690457 TGAC
i nomLeu3.chr11            C 0 C 0
s macFas5.chr2                 98684 4 + 192460366 TGAC
i macFas5.chr2             C 0 T 48
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 54 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=23534.000000
s hg38.chr3_KI270935v1_alt    155522 56 +    197351 CTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGGCTGGCGTGACCTGTGGAT
s panTro4.chr3             199794279 56 + 202329955 CTGTGGATGCTGAGGAAGAGATGGTGACAGGAAGAGGGGTGGTGTCACCTGTGGAT
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120914787 56 + 123690457 CTGTGGATGCTGAGGATGTGTCAGTGACAGGAGGAGAGGTGGTGTGACCTGTGGAT
i nomLeu3.chr11            C 0 C 0
s macFas5.chr2                 98640 56 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAAT
i macFas5.chr2             T 48 T 56
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 54 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=11467.000000
s hg38.chr3_KI270935v1_alt    155578 48 +    197351 GCTGAGGAAGGGCTAGTGACAGGAAGAGGCGTGGTGTCACCTGTGGAT
s panTro4.chr3             199794335 48 + 202329955 GCTGAGGAAGAGATGGTGACAGGAAGAGGGGTGGTGTGACCTGTGGAT
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120914843 48 + 123690457 GCTGAGGAAGTGCTGGTGACAGGAAGAGAGGTGGTGTGACCTGTGGAT
i nomLeu3.chr11            C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86539 54 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=6313.000000
s hg38.chr3_KI270935v1_alt    155626 88 +    197351 ACTGAGGAAAGGCTGGTGACAGGAAGAGGGGTGGCCTGACCTGTGGATGCCGAGGAAACGTCGGTGACAGGAAGATGGGTGGTGTCAT
s panTro4.chr3             199794383 88 + 202329955 ACTGAGGAAGCGTCGGTGACAGGAAGAGAGGTGGTGTCACCTGTGGATACTGAGGAAGCGTCGGTGACAGAAAGAGGGGTGGTGTCAC
i panTro4.chr3             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86539 54 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=9507.000000
s hg38.chr3_KI270935v1_alt    155714 49 +    197351 CTGTGGAAGCTGAGGAAAGGCCGGTGACAGGAAGAGGGGTGGCGTGACG
s panTro4.chr3             199794471 49 + 202329955 CTGTGGATACTGAGGGAGCGTCGGTGACAGGAAGAGGGGTGGTGTCACC
i panTro4.chr3             C 0 I 1152
s macFas5.chr2                 98640 49 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACC
i macFas5.chr2             T 56 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 54 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=2003.000000
s hg38.chr3_KI270935v1_alt    155763 8 +    197351 TGTGGATA
s panTro4.chr3             199795672 8 + 202329955 TGTGGATA
i panTro4.chr3             I 1152 C 0
s macFas5.chr2                 98689 8 + 192460366 TGTGAATA
i macFas5.chr2             C 0 T 55
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 54 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891 0 + 123690457 C

a score=2714.000000
s hg38.chr3_KI270935v1_alt    155771 41 +    197351 CTGAGGAATTGTCGGTGACAGGAAGAGGGGTGGCATGACCG
s panTro4.chr3             199795680 41 + 202329955 CTGAGGAAGCTTCGGTGACAGGAAGAGGGGTGGTGTCACCT
i panTro4.chr3             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98697 55 + 192460366 T
e papAnu2.chr2                 86539 54 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=7928.000000
s hg38.chr3_KI270935v1_alt    155812 18 +    197351 GTGGATGCTGAGAAAGTG
s panTro4.chr3             199795721 18 + 202329955 GTGGATACTGAGGAAGTG
i panTro4.chr3             C 0 T 1152
s macFas5.chr2                 98642 18 + 192460366 GTGGATGCTGAGAAAGCA
i macFas5.chr2             T 55 C 0
s papAnu2.chr2                 86485 18 - 187378091 GTGGATGCTGAGGATGCG
i papAnu2.chr2             T 54 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=10501.000000
s hg38.chr3_KI270935v1_alt    155830 28 +    197351 CTGGTGACAGGAAGAGGGGTGGCGTGAC
s panTro4.chr3             199794587 28 + 202329955 TCGGTGACAGGAAGAGGGGTGGTGTCAC
i panTro4.chr3             T 1152 C 0
s macFas5.chr2                 98660 28 + 192460366 CCCGTGACAGGAAGAGTGGTAGCGTGAC
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                 86503 28 - 187378091 CTGCTGACGGCAAGAGGGGTGGCATGAC
i papAnu2.chr2             C 0 T 48
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=4191.000000
s hg38.chr3_KI270935v1_alt    155858 8 +    197351 CTGTGGAT
s panTro4.chr3             199794615 8 + 202329955 CTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98688 8 + 192460366 CTGTGAAT
i macFas5.chr2             C 0 T 48
s papAnu2.chr2                 86483 8 - 187378091 CTGTGGAT
i papAnu2.chr2             T 48 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891 0 + 123690457 C

a score=19927.000000
s hg38.chr3_KI270935v1_alt    155866 49 +    197351 GCTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATA
s panTro4.chr3             199794623 49 + 202329955 ACTGAGGAAGGGCTGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGATA
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98648 49 + 192460366 GCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAATA
i macFas5.chr2             T 48 T 57
s papAnu2.chr2                 86491 49 - 187378091 GCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGACCTGTGAGTA
i papAnu2.chr2             C 0 T 57
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=3289.000000
s hg38.chr3_KI270935v1_alt    155915 39 +    197351 ATGAGGAAGCATTGGTGACAGGAAGAGGGGTGGTGTCAC
s panTro4.chr3             199794672 39 + 202329955 CTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGTGTCAC
i panTro4.chr3             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98697 57 + 192460366 T
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=12005.000000
s hg38.chr3_KI270935v1_alt    155954 56 +    197351 CTGTGGATGCTGAGGAAGTGTCGGTGACAAGAAGAGGGGTGGTGTGACCTGTAGAT
s panTro4.chr3             199794711 56 + 202329955 CTGTGGATACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGATGTCACCTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 56 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAAT
i macFas5.chr2             T 57 T 56
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=3378.000000
s hg38.chr3_KI270935v1_alt    156010 40 +    197351 GCTGAGGAAGGGCTGGTGACAGGAAGAGGGGTGGTGTCAC
s panTro4.chr3             199794767 40 + 202329955 GCTGAGGAAGGGCTGGTGACAGGAAGAGACGTGATGTCAC
i panTro4.chr3             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=9772.000000
s hg38.chr3_KI270935v1_alt    156050 48 +    197351 CTTTGGATGCTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGTGTGAC
s panTro4.chr3             199794807 48 + 202329955 CGCTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGTGTCAC
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 48 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGAC
i macFas5.chr2             T 56 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=3798.000000
s hg38.chr3_KI270935v1_alt    156098 8 +    197351 CTGTAGAT
s panTro4.chr3             199794855 8 + 202329955 CTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98688 8 + 192460366 CTGTGAAT
i macFas5.chr2             C 0 T 56
s papAnu2.chr2                 86483 8 - 187378091 CTGTGGAT
i papAnu2.chr2             T 57 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891 0 + 123690457 C

a score=8974.000000
s hg38.chr3_KI270935v1_alt    156106 49 +    197351 GCTGAGGAAGGGCTGGTGACAGTAAGAGGGGTGGTGTGACCTGTGGATA
s panTro4.chr3             199794863 49 + 202329955 ACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGATCTCACCTGTGGATG
i panTro4.chr3             C 0 C 0
s papAnu2.chr2                 86491 49 - 187378091 GCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGACCTGTGAGTA
i papAnu2.chr2             C 0 T 57
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=6372.000000
s hg38.chr3_KI270935v1_alt    156155 87 +    197351 CTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGGGCTAGTGACAGGAAGAGGCATGGTGTCAC
s panTro4.chr3             199794912 87 + 202329955 CTGAGGAAGGGCTGGTGACAGGAAGAGACGTGGTGTCACCTCTGGATACTGAGGAAGTGTTGGTGACAGGAAGAGGGGTGGTGTCAC
i panTro4.chr3             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=24214.000000
s hg38.chr3_KI270935v1_alt    156242 56 +    197351 CTGTGGATGCTGAGGAAAGGCTGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGAT
s panTro4.chr3             199794999 56 + 202329955 CTGTGGATACTGAGGAAGGGCTGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 56 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAAT
i macFas5.chr2             T 56 T 48
s papAnu2.chr2                 86483 56 - 187378091 CTGTGGATGCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGACCTGTGAGT
i papAnu2.chr2             T 57 T 56
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=9399.000000
s hg38.chr3_KI270935v1_alt    156298 48 +    197351 GCTGAGGAAGGGCTGGTGACATGAAGAGGAGTGACGTGACCTGTGGAT
s panTro4.chr3             199795055 48 + 202329955 ACTGAGGAAGCGTCGGTGACAGGAAGAGGGTTGGCGTGACCTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98648 48 + 192460366 GCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAAT
i macFas5.chr2             T 48 T 56
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=2686.000000
s hg38.chr3_KI270935v1_alt    156346 40 +    197351 GCTGAGGAAGTGCTAGTGACAGGAAGAGGCATGGTGTCAC
s panTro4.chr3             199795103 40 + 202329955 GCTGAGGAAGGGTTGGTGACAGGAAGAGGGGTGGCGTGAC
i panTro4.chr3             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=12109.000000
s hg38.chr3_KI270935v1_alt    156386 56 +    197351 CTGTGGATACTGAGGAAGTGTCGGTGACAAGAAGAGAGGTGGCATGACCTGTGGAT
s panTro4.chr3             199795143 56 + 202329955 CTGTGGATACTGAGGAAGTATCGGTGACAGGAAGAGGGGTGGTGTCACCTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 56 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAAT
i macFas5.chr2             T 56 T 48
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=7576.000000
s hg38.chr3_KI270935v1_alt    156442 40 +    197351 GCTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCCTGAC
s panTro4.chr3             199795199 40 + 202329955 GCTGAGGAAGAGATGGTGACAGGAAGAGGGGTGGTGTGAC
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98648 40 + 192460366 GCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGAC
i macFas5.chr2             T 48 T 48
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=12791.000000
s hg38.chr3_KI270935v1_alt    156482 56 +    197351 CTGTGGATGCTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGTGTGACCTGTGGAT
s panTro4.chr3             199795239 56 + 202329955 CTGTGGATACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGTGTCACCTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 56 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAAT
i macFas5.chr2             T 48 T 48
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=5293.000000
s hg38.chr3_KI270935v1_alt    156538 29 +    197351 GCTGAGGAAGGGACGGTTACAGGAAGAGA
s panTro4.chr3             199795295 29 + 202329955 ACTGAGGAAGCGTCGGTGACAGGAAGAGA
i panTro4.chr3             C 0 T 1200
s macFas5.chr2                 98648 29 + 192460366 GCTGAGAAAGCACCCGTGACAGGAAGAGT
i macFas5.chr2             T 48 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=2957.000000
s hg38.chr3_KI270935v1_alt    156567 11 +    197351 GGTGGCGTGAC
s panTro4.chr3             199794124 11 + 202329955 GGTGGCGTGAC
i panTro4.chr3             T 1200 C 0
s macFas5.chr2                 98677 11 + 192460366 GGTAGCGTGAC
i macFas5.chr2             C 0 T 48
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=10635.000000
s hg38.chr3_KI270935v1_alt    156578 48 +    197351 CTGTGGACACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGCGTGTC
s panTro4.chr3             199794135 48 + 202329955 CTGTGGATACTGAGGAAGCGTCGGTGACAGGAAGAGGGTTGGCGTGAC
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 48 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGAC
i macFas5.chr2             T 48 T 48
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=12951.000000
s hg38.chr3_KI270935v1_alt    156626 56 +    197351 CTGTGGATGCTGAGGAAGTGTCGGTGACAAGAAGAGGGGTGGCGTGACCTGTGGAT
s panTro4.chr3             199794183 56 + 202329955 CTGTGGATGCTGAGGAAGGGCTGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 56 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAAT
i macFas5.chr2             T 48 T 56
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=10188.000000
s hg38.chr3_KI270935v1_alt    156682 136 +    197351 GCTGAGGAAGGGCTAGTGACAGGAAGAGGCGTGGTGTCACCTGTGGATACTGAGGAAAGGCTGGTGACAGGAAGAGGGGTGGCCTGACCTGTGGATGCTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGTGTCAC
s panTro4.chr3             199794239 136 + 202329955 ACTGAGGAAGTATCAGTGACAGGAAGAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGAGATGGTGACAGGAAGAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGAGATGGTGACAGGAAGAGGGGTGGTGTGAC
i panTro4.chr3             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696  56 + 192460366 T
e papAnu2.chr2                 86539  56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891   0 + 123690457 C

a score=8781.000000
s hg38.chr3_KI270935v1_alt    156818 44 +    197351 CTGTGGATGCTGAGGAAGTGCTGGTGAGAGGAAGAGGGGTGGCC
s panTro4.chr3             199794375 44 + 202329955 CTGTGGATACTGAGGAAGCGTCGGTGACAGGAAGAGAGGTGGTG
i panTro4.chr3             C 0 I 288
s macFas5.chr2                 98640 44 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCG
i macFas5.chr2             T 56 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=2726.000000
s hg38.chr3_KI270935v1_alt    156862 12 +    197351 TGACCTGTGGAT
s panTro4.chr3             199794707 12 + 202329955 TCACCTGTGGAT
i panTro4.chr3             I 288 C 0
s macFas5.chr2                 98684 12 + 192460366 TGACCTGTGAAT
i macFas5.chr2             C 0 T 56
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=11064.000000
s hg38.chr3_KI270935v1_alt    156874 136 +    197351 GCTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGTGTCACCTGTAGATGCTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGTGTCAC
s panTro4.chr3             199794719 136 + 202329955 ACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGATGTCACCTGTGGATGCTGAGGAAGGGCTGGTGACAGGAAGAGACGTGATGTCACCGCTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGTGTCAC
i panTro4.chr3             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696  56 + 192460366 T
e papAnu2.chr2                 86539  56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891   0 + 123690457 C

a score=11214.000000
s hg38.chr3_KI270935v1_alt    157010 56 +    197351 CTGTGGATAATGAGGAAGCATCGGTGACATGAAGAAGGGTGGCGTGACCTGTGGAT
s panTro4.chr3             199794855 56 + 202329955 CTGTGGATACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGATCTCACCTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 56 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAAT
i macFas5.chr2             T 56 T 56
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=6996.000000
s hg38.chr3_KI270935v1_alt    157066 88 +    197351 GCTGAGGAAGGGCTAGTGACAGGAAGAGGGGTGGTGTCATCTGTGGACACTGAGGAAGCGTCGGTGACAAGAAGAGAGGTGGTGTCAC
s panTro4.chr3             199794911 88 + 202329955 GCTGAGGAAGGGCTGGTGACAGGAAGAGACGTGGTGTCACCTCTGGATACTGAGGAAGTGTTGGTGACAGGAAGAGGGGTGGTGTCAC
i panTro4.chr3             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=24478.000000
s hg38.chr3_KI270935v1_alt    157154 57 +    197351 CTGTGGATGCTGAGGAAGGGCTGGTGACAGGAAGAGGGGTGGCGTCACCTGTGGATA
s panTro4.chr3             199794999 57 + 202329955 CTGTGGATACTGAGGAAGGGCTGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGATA
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 57 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAATA
i macFas5.chr2             T 56 T 57
s papAnu2.chr2                 86483 57 - 187378091 CTGTGGATGCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGACCTGTGAGTA
i papAnu2.chr2             T 56 T 57
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=6102.000000
s hg38.chr3_KI270935v1_alt    157211 87 +    197351 ATGAGGAAGGGCTAGTGACAGGAAGAGGCGTGGTGTCACCTGTGGATGCTGAGGAAGGGCTAGTGACAGGCAGAGGGGTGGCCTGAC
s panTro4.chr3             199795056 87 + 202329955 CTGAGGAAGCGTCGGTGACAGGAAGAGGGTTGGCGTGACCTGTGGATGCTGAGGAAGGGTTGGTGACAGGAAGAGGGGTGGCGTGAC
i panTro4.chr3             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98697 57 + 192460366 T
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=12793.000000
s hg38.chr3_KI270935v1_alt    157298 57 +    197351 CTGTGGATGCTGAGGAAGCATCGGTGACAAGAAGAGGGGTGGTGTCACCTGTGGATA
s panTro4.chr3             199795143 57 + 202329955 CTGTGGATACTGAGGAAGTATCGGTGACAGGAAGAGGGGTGGTGTCACCTGTGGATG
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 57 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAATA
i macFas5.chr2             T 57 T 57
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=2839.000000
s hg38.chr3_KI270935v1_alt    157355 39 +    197351 CTGAGGAAAGGCTGGTGACAGGAAGAGGCGTGGTGTCAC
s panTro4.chr3             199795200 39 + 202329955 CTGAGGAAGAGATGGTGACAGGAAGAGGGGTGGTGTGAC
i panTro4.chr3             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98697 57 + 192460366 T
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=19040.000000
s hg38.chr3_KI270935v1_alt    157394 48 +    197351 CTGTGGATACTGAGGAAAGGCTGGTGACAGGAAGAGGGGTGGCGTGAC
s panTro4.chr3             199795239 48 + 202329955 CTGTGGATACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGTGTCAC
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 48 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGAC
i macFas5.chr2             T 57 T 48
s papAnu2.chr2                 86483 48 - 187378091 CTGTGGATGCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGAC
i papAnu2.chr2             T 57 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=4005.000000
s hg38.chr3_KI270935v1_alt    157442 9 +    197351 CTGTGGATA
s panTro4.chr3             199795287 9 + 202329955 CTGTGGATA
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 9 + 192460366 CTGTGGATG
i macFas5.chr2             T 48 C 0
s papAnu2.chr2                 86531 9 - 187378091 CTGTGAGTA
i papAnu2.chr2             C 0 T 57
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891 0 + 123690457 C

a score=7996.000000
s hg38.chr3_KI270935v1_alt    157451 39 +    197351 CTGAGGAAGCATCAGTGACATGAAGAGGGGTGGTGTGAC
s panTro4.chr3             199795296 39 + 202329955 CTGAGGAAGCGTCGGTGACAGGAAGAGAGGTGGTGTCAC
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98649 39 + 192460366 CTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGAC
i macFas5.chr2             C 0 T 48
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=11098.000000
s hg38.chr3_KI270935v1_alt    157490 48 +    197351 CTGTGGATGCTGAGGAGGTGTCGGTGACAGGAAGAGAGGTGGCGTGAC
s panTro4.chr3             199795335 48 + 202329955 CTGTGGATACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGCGTGAC
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 48 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGAC
i macFas5.chr2             T 48 T 48
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=13523.000000
s hg38.chr3_KI270935v1_alt    157538 57 +    197351 CTGTGGATGCTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGTGTGACCTGTGGATA
s panTro4.chr3             199795383 57 + 202329955 CTGTGGATACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGATA
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 57 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAATA
i macFas5.chr2             T 48 T 48
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=8666.000000
s hg38.chr3_KI270935v1_alt    157595 39 +    197351 CTGAGGAACTGTCGGTGACAGGAAGAGAGGTGGCGTGAC
s panTro4.chr3             199795440 39 + 202329955 CTGAGGAAGTGTCGGTGACAGGAAGAGAGGTGGCGTGAC
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98649 39 + 192460366 CTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGAC
i macFas5.chr2             T 48 T 48
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=10621.000000
s hg38.chr3_KI270935v1_alt    157634 48 +    197351 CTGTGGATGCTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGTGTGAC
s panTro4.chr3             199795479 48 + 202329955 CTGTGGATACTGAGGAAGCGTCGGTGACAGGAAGAGAGGTGGTGTCAC
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 48 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGAC
i macFas5.chr2             T 48 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=4191.000000
s hg38.chr3_KI270935v1_alt    157682 8 +    197351 CTGTGGAT
s panTro4.chr3             199795527 8 + 202329955 CTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98688 8 + 192460366 CTGTGAAT
i macFas5.chr2             C 0 T 48
s papAnu2.chr2                 86483 8 - 187378091 CTGTGGAT
i papAnu2.chr2             T 57 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891 0 + 123690457 C

a score=14596.000000
s hg38.chr3_KI270935v1_alt    157690 40 +    197351 GCTGAGGAAAGGCTGGTGACAGGAAGAGGGGTGACGTGAC
s panTro4.chr3             199795535 40 + 202329955 ACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGCGTCAC
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98648 40 + 192460366 GCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGAC
i macFas5.chr2             T 48 T 48
s papAnu2.chr2                 86491 40 - 187378091 GCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGAC
i papAnu2.chr2             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=3825.000000
s hg38.chr3_KI270935v1_alt    157730 8 +    197351 CTGTGGAT
s panTro4.chr3             199795575 8 + 202329955 CTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 8 + 192460366 CTGTGGAT
i macFas5.chr2             T 48 C 0
s papAnu2.chr2                 86531 8 - 187378091 CTGTGAGT
i papAnu2.chr2             C 0 T 56
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891 0 + 123690457 C

a score=8203.000000
s hg38.chr3_KI270935v1_alt    157738 40 +    197351 TCTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGTGTGAC
s panTro4.chr3             199795583 40 + 202329955 ACTGAGGAAGTGTCGGTGACCGGAAGAGGGGTGGCGTGAC
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98648 40 + 192460366 GCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGAC
i macFas5.chr2             C 0 T 48
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=23946.000000
s hg38.chr3_KI270935v1_alt    157778 57 +    197351 CTGTGGATACTGAGGAAGGGCTGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGATA
s panTro4.chr3             199795623 57 + 202329955 CTGTGGATATTGAAGAAGCGTCGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGATA
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 57 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAATA
i macFas5.chr2             T 48 T 48
s papAnu2.chr2                 86483 57 - 187378091 CTGTGGATGCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGACCTGTGAGTA
i papAnu2.chr2             T 56 T 57
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=10102.000000
s hg38.chr3_KI270935v1_alt    157835 47 +    197351 CTGAGGAAGCATCGGTGACATGAAGAGGGGTGGTGTGACCTGTGGAT
s panTro4.chr3             199795680 47 + 202329955 CTGAGGAAGCTTCGGTGACAGGAAGAGGGGTGGTGTCACCTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98649 47 + 192460366 CTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAAT
i macFas5.chr2             T 48 T 48
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=2229.000000
s hg38.chr3_KI270935v1_alt    157882 13 +    197351 GCCGAGGAAGCGT
s panTro4.chr3             199795727 13 + 202329955 ACTGAGGAAGTGT
i panTro4.chr3             C 0 T 288
s macFas5.chr2                 98648 13 + 192460366 GCTGAGAAAGCAC
i macFas5.chr2             T 48 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=8179.000000
s hg38.chr3_KI270935v1_alt    157895 35 +    197351 AGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGAT
s panTro4.chr3             199795452 35 + 202329955 CGGTGACAGGAAGAGAGGTGGCGTGACCTGTGGAT
i panTro4.chr3             T 288 C 0
s macFas5.chr2                 98661 35 + 192460366 CCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAAT
i macFas5.chr2             C 0 T 56
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=-31.000000
s hg38.chr3_KI270935v1_alt    157930 1 +    197351 G
s panTro4.chr3             199795487 1 + 202329955 A
i panTro4.chr3             C 0 T 279
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891 0 + 123690457 C

a score=0.000000
s hg38.chr3_KI270935v1_alt    157931 40 +    197351 CTGAGGAAGTGTCAGTGACAGGAAGAGGGGTGCTGTCCCC
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C
e panTro4.chr3             199795488 279 + 202329955 T

a score=4232.000000
s hg38.chr3_KI270935v1_alt    157971 18 +    197351 CTGTGGATGCTGAGGAAA
s macFas5.chr2                 98640 18 + 192460366 CTGTGGATGCTGAGAAAG
i macFas5.chr2             T 56 C 0
s papAnu2.chr2                 86483 18 - 187378091 CTGTGGATGCTGAGGATG
i papAnu2.chr2             T 57 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C
e panTro4.chr3             199795488 279 + 202329955 T

a score=10445.000000
s hg38.chr3_KI270935v1_alt    157989 30 +    197351 GGCTGGTGACAGGAAGAGGGGTGACGTGAC
s panTro4.chr3             199795209 30 + 202329955 AGATGGTGACAGGAAGAGGGGTGGTGTGAC
i panTro4.chr3             T 279 C 0
s macFas5.chr2                 98658 30 + 192460366 CACCCGTGACAGGAAGAGTGGTAGCGTGAC
i macFas5.chr2             C 0 T 48
s papAnu2.chr2                 86501 30 - 187378091 CGCTGCTGACGGCAAGAGGGGTGGCATGAC
i papAnu2.chr2             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=3825.000000
s hg38.chr3_KI270935v1_alt    158019 8 +    197351 CTGTGGAT
s panTro4.chr3             199795239 8 + 202329955 CTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 8 + 192460366 CTGTGGAT
i macFas5.chr2             T 48 C 0
s papAnu2.chr2                 86531 8 - 187378091 CTGTGAGT
i papAnu2.chr2             C 0 T 56
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891 0 + 123690457 C

a score=-1043.000000
s hg38.chr3_KI270935v1_alt    158027 1 +    197351 -T
s panTro4.chr3             199795247 1 + 202329955 -A
i panTro4.chr3             C 0 I 240
s macFas5.chr2                 98648 1 + 192460366 G-
i macFas5.chr2             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891 0 + 123690457 C

a score=8291.000000
s hg38.chr3_KI270935v1_alt    158028 39 +    197351 CTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGTGTGAC
s panTro4.chr3             199795488 39 + 202329955 CTGAGGAAGCGTCGGTGACAGGAAGAGAGGTGGTGTCAC
i panTro4.chr3             I 240 C 0
s macFas5.chr2                 98649 39 + 192460366 CTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGAC
i macFas5.chr2             C 0 T 48
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=24057.000000
s hg38.chr3_KI270935v1_alt    158067 57 +    197351 CTGTGGATACTGAGGAAGGGCTGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGATA
s panTro4.chr3             199795527 57 + 202329955 CTGTGGATACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGCGTCACCTGTGGATA
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 57 + 192460366 CTGTGGATGCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAATA
i macFas5.chr2             T 48 T 48
s papAnu2.chr2                 86483 57 - 187378091 CTGTGGATGCTGAGGATGCGCTGCTGACGGCAAGAGGGGTGGCATGACCTGTGAGTA
i papAnu2.chr2             T 56 T 57
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=10073.000000
s hg38.chr3_KI270935v1_alt    158124 47 +    197351 CTGAGGAAGCATCGGTGACATGAAGAGGGGTGGTGTGACCTGTGGAT
s panTro4.chr3             199795584 47 + 202329955 CTGAGGAAGTGTCGGTGACCGGAAGAGGGGTGGCGTGACCTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98649 47 + 192460366 CTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAAT
i macFas5.chr2             T 48 T 48
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=10286.000000
s hg38.chr3_KI270935v1_alt    158171 48 +    197351 GCCGAGGAAGCGTAGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGAT
s panTro4.chr3             199795631 48 + 202329955 ATTGAAGAAGCGTCGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98648 48 + 192460366 GCTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGACCTGTGAAT
i macFas5.chr2             T 48 T 56
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=2828.000000
s hg38.chr3_KI270935v1_alt    158219 40 +    197351 GCTGAGGAAGTGTCAGTGACAGGAAGAGGGGTGCTGTCCC
s panTro4.chr3             199795679 40 + 202329955 ACTGAGGAAGCTTCGGTGACAGGAAGAGGGGTGGTGTCAC
i panTro4.chr3             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 56 + 192460366 T
e papAnu2.chr2                 86540 57 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=8340.000000
s hg38.chr3_KI270935v1_alt    158259 17 +    197351 CTGTGGATGCTGAGGAA
s panTro4.chr3             199795719 17 + 202329955 CTGTGGATACTGAGGAA
i panTro4.chr3             C 0 T 240
s macFas5.chr2                 98640 17 + 192460366 CTGTGGATGCTGAGAAA
i macFas5.chr2             T 56 C 0
s papAnu2.chr2                 86483 17 - 187378091 CTGTGGATGCTGAGGAT
i papAnu2.chr2             T 57 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=5985.000000
s hg38.chr3_KI270935v1_alt    158276 20 +    197351 AGGCTGGTGACAGGAAGAGG
s panTro4.chr3             199795496 20 + 202329955 GCGTCGGTGACAGGAAGAGA
i panTro4.chr3             T 240 C 0
s macFas5.chr2                 98657 20 + 192460366 GCACCCGTGACAGGAAGAGT
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                 86500 20 - 187378091 GCGCTGCTGACGGCAAGAGG
i papAnu2.chr2             C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e canFam3.chr33             29085096 529 +  31377067 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=3867.000000
s hg38.chr3_KI270935v1_alt    158296 11 +    197351 GGTGACGTGAC--
s panTro4.chr3             199795516 11 + 202329955 GGTGGTGTCAC--
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98677 11 + 192460366 GGTAGCGTGAC--
i macFas5.chr2             C 0 T 48
s papAnu2.chr2                 86520 11 - 187378091 GGTGGCATGAC--
i papAnu2.chr2             C 0 C 0
s canFam3.chr33             29085625 13 +  31377067 GGTGACGTGTGTC
i canFam3.chr33            I 529 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=5415.000000
s hg38.chr3_KI270935v1_alt    158307 8 +    197351 CTGTGGAT
s panTro4.chr3             199795527 8 + 202329955 CTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98640 8 + 192460366 CTGTGGAT
i macFas5.chr2             T 48 C 0
s papAnu2.chr2                 86531 8 - 187378091 CTGTGAGT
i papAnu2.chr2             C 0 T 56
s canFam3.chr33             29085638 8 +  31377067 CCGTGGTT
i canFam3.chr33            C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891 0 + 123690457 C

a score=3318.000000
s hg38.chr3_KI270935v1_alt    158315 14 +    197351 TCTGAGGAAGTGTC
s panTro4.chr3             199795535 14 + 202329955 ACTGAGGAAGCGTC
i panTro4.chr3             C 0 I 193
s macFas5.chr2                 98648 14 + 192460366 GCTGAGAAAGCACC
i macFas5.chr2             C 0 C 0
s canFam3.chr33             29085646 14 +  31377067 CCTGCTGGGGTGTC
i canFam3.chr33            C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=4836.000000
s hg38.chr3_KI270935v1_alt    158329 26 +    197351 GGTGACAGGAAGAGGGGTGGTGTGAC
s panTro4.chr3             199795742 26 + 202329955 AAAGACAGGAAGAGAGGTGGTGTCAC
i panTro4.chr3             I 193 C 0
s macFas5.chr2                 98662 26 + 192460366 CGTGACAGGAAGAGTGGTAGCGTGAC
i macFas5.chr2             C 0 T 48
s canFam3.chr33             29085660 24 +  31377067 --TGATGCAATCAGTGTCGTCGGGAC
i canFam3.chr33            C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86539 56 - 187378091 T
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=9607.000000
s hg38.chr3_KI270935v1_alt    158355 18 +    197351 CTGTG--GATACTGAGGAAG
s panTro4.chr3             199795768 18 + 202329955 CTGTG--GATACTGAGGAAG
i panTro4.chr3             C 0 T 193
s macFas5.chr2                 98640 18 + 192460366 CTGTG--GATGCTGAGAAAG
i macFas5.chr2             T 48 C 0
s papAnu2.chr2                 86483 18 - 187378091 CTGTG--GATGCTGAGGATG
i papAnu2.chr2             T 56 C 0
s canFam3.chr33             29085684 20 +  31377067 CTGTGATGTCATTGGTGATG
i canFam3.chr33            C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=11851.000000
s hg38.chr3_KI270935v1_alt    158373 39 +    197351 GGCTGGTG--ACAGGAAGAGGGGTGGCGTGACCTGTGGATA--
s panTro4.chr3             199795593 39 + 202329955 TGTCGGTG--ACCGGAAGAGGGGTGGCGTGACCTGTGGATA--
i panTro4.chr3             T 193 C 0
s macFas5.chr2                 98658 39 + 192460366 CACCCGTG--ACAGGAAGAGTGGTAGCGTGACCTGTGAATA--
i macFas5.chr2             C 0 T 48
s papAnu2.chr2                 86501 39 - 187378091 CGCTGCTG--ACGGCAAGAGGGGTGGCATGACCTGTGAGTA--
i papAnu2.chr2             C 0 I 616
s canFam3.chr33             29085704 42 +  31377067 TGTTGCTTCCACTGGAAGA-TCTTGAAGTGTCCCCAGGGGAGG
i canFam3.chr33            C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=8235.000000
s hg38.chr3_KI270935v1_alt    158412 47 +    197351 CTGAGGAAGCATCGGTGACATGAAGAGGGGTGGTGTGA-----CCTGTGGAT
s panTro4.chr3             199795632 47 + 202329955 TTGAAGAAGCGTCGGTGACAGGAAGAGGGGTGGCGTGA-----CCTGTGGAT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                 98649 47 + 192460366 CTGAGAAAGCACCCGTGACAGGAAGAGTGGTAGCGTGA-----CCTGTGAAT
i macFas5.chr2             T 48 I 5347
s canFam3.chr33             29085746 26 +  31377067 CTGA--------------------------TGGTGTGGGTATTTCTGTCACT
i canFam3.chr33            C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e papAnu2.chr2                 86540 616 - 187378091 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=4109.000000
s hg38.chr3_KI270935v1_alt    158459 34 +    197351 GCCGAGGAAGCGTAGGTGACA-GGAAGAGGGGTGG
s panTro4.chr3             199795679 34 + 202329955 ACTGAGGAAGCTTCGGTGACA-GGAAGAGGGGTGG
i panTro4.chr3             C 0 M 3000
s canFam3.chr33             29085772 35 +  31377067 GCGGAAGGTGTGTGGCTGACACTGGAAAGGGATGA
i canFam3.chr33            C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 5347 + 192460366 I
e papAnu2.chr2                 86540 616 - 187378091 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C

a score=-114.000000
s hg38.chr3_KI270935v1_alt    158493 1 +    197351 C
s canFam3.chr33             29085807 1 +  31377067 A
i canFam3.chr33            C 0 C 0
e rheMac3.chrUn_JH291127       55525 620 +    111706 I
e mm10.chr16                65449197 1915 -  98207768 I
e calJac3.chr17               957070 1047 -  74750902 I
e chlSab2.chr15               434286 620 -  91754291 I
e macFas5.chr2                 98696 5347 + 192460366 I
e papAnu2.chr2                 86540 616 - 187378091 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891 0 + 123690457 C
e panTro4.chr3             199795713 3000 + 202329955 M

a score=109748.000000
s hg38.chr3_KI270935v1_alt    158494 201 +    197351 GTTGCTGATGAGGGCCGTCGTGAAGGTTTTACCAGACCCTGAAGGTGACAGAGTGTGGGTCTCGGTTTGTGGAGATGTAAGCCCACTGGATGTGATCGATGGAGGTGTGGGTGGGACTGTTGAGAAGGTGTCGGTTGCCTGGGACGCCAGGCTGATAGTGTCAGACCCTCTGCTGGTTCTTGTCCTCTGAGTCTGGGCCAT
s rheMac3.chrUn_JH291127       56145 201 +    111706 GTTGCTGACAAGGGCCATGTTGAAGGTTGTACCAGACCCTGAAGGTGACAGAGTGTGGGTCTCGGTTTGTGGAAATGTGAGCCCACTGGATGTGATCGAAGGAGGTGTGGGTGTGACTGTTGAGAAAGTGTCAGTCGCCTGGGACACCAGGCTGATGGTGTCAGACCCTCTGCTGGTTCCTGTCTTCTCAGTCTGCGCCAT
i rheMac3.chrUn_JH291127   I 620 C 0
s papAnu2.chr2                 87156 201 - 187378091 GTTGCTGACGAGGGCCATGTTGAAGGTTGTACCAGACCCTGAAGGTGACAGAGTGTGGGTCTCGGTTTGTGGAAATGTGAGCCCACTGGATGTGATCGAAGGAGGTGTGGGTGTGACTGTTGAGAAAGTGTCAGTCGCCTGGGACACCAGGCTGATGGTGTCAGACCCTCTGCTGGTTCCTGTCCTCTGAGTCTGCGCCAT
i papAnu2.chr2             I 616 C 0
s chlSab2.chr15               434906 201 -  91754291 GTTGCTGATGAGGGCCATGTTGAAGGTTGTACCAGACCCTGAAGGTGACAGAGCGTGGGTCTCGGTTTGTGGAAATGTGAGCCCACTGGATGTGATCGAAGGAGGTGTGGGTGTGACTGTTGAGAAAGTGTCGGTCACCTGGGACACCAGGCTGATGGTGTCAGACCCTCTGCTGGTTCCTGTCCTCTGAGTCTGCGCCAT
i chlSab2.chr15            I 620 C 0
s canFam3.chr33             29085808 146 +  31377067 GTACTTGG-------------------TGTGTCAGAC----AAGGC--CATGTCCTGGGTCGAGTCATCTGTAGGTGTGTGTTCACTTCGGGAGGATGAGGGA---GTGGATGTGATCATCG----------------CTGAGACA-----CTGCTGGTTGCAGACTCTGTGCTGGTCTCCAT------GGTCTGGGTCAT
i canFam3.chr33            C 0 I 919
e mm10.chr16                65449197 1915 -  98207768 I
e calJac3.chr17               957070 1047 -  74750902 I
e macFas5.chr2                 98696 5347 + 192460366 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891   0 + 123690457 C
e panTro4.chr3             199795713 3000 + 202329955 M

a score=61994.000000
s hg38.chr3_KI270935v1_alt    158695 121 +    197351 CCGGGAAATGGCG--GCTGTCTCCTGAGGAGAGGCACTGGGAGAAGTTGGGCTTGACTGTCCTGTCGGTCTCCCTGCAGTGGAGGCCTCAG----------------------------AGAGGGTGGGATG-----------------AAAGGTGCCGGGGACGATC---------------
s rheMac3.chrUn_JH291127       56346 121 +    111706 CCGGGAAATGGCG--GCCGTCTCCTGAGGAGAGGCACTGGGAGAAGTTGGGCTTGACTGTCCTGTTGGTCTCCCTGCAGTGGAGGCCTCAG----------------------------AGAGGGTGACAGG-----------------AAAGGTGCTGGGGACAATC---------------
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 87357 121 - 187378091 CCGGGAAATGGCG--GCCATCTCCTGAGGAGAGGCACTGGGAGAAGTTGGGCTTGACTGTCCTGTCGGTCTCCGTGCAGTGGAGGCCTCAG----------------------------AGAGAGTGACAGG-----------------AAAGGTGCTGGGGACAATC---------------
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               435107 121 -  91754291 CTGGGAAATGGCA--GCCGTCTCCTGAGGAGAGGCACTGGGAGAAGTTGGGCTTGAGTGTCCTGTCGGTCTCCCTGCAGTGGAGGCCTCAG----------------------------AGAGGGTGACAGG-----------------AAAGGTGCTGGGGACAATC---------------
i chlSab2.chr15            C 0 C 0
s canFam3.chr33             29086873 183 +  31377067 CCCTGAGATGACGCTGTTGTCTCTGGAGTAGAAGTCAGGGAAGAGTGTGCTGTTGAGTGTCCCCCTGGTCCACTTGTCATTGAGTCTGTTGAGCTGACTGGTGTAACACTTCCCGTTTCAGGTGGTGACGTGTGTCCCGTGGTTCCTGCTGGGGTGTCTGATGCAATCAGTGTCGTCGGGACC
i canFam3.chr33            I 919 C 0
e mm10.chr16                65449197 1915 -  98207768 I
e calJac3.chr17               957070 1047 -  74750902 I
e macFas5.chr2                 98696 5347 + 192460366 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891   0 + 123690457 C
e panTro4.chr3             199795713 3000 + 202329955 M

a score=511521.000000
s hg38.chr3_KI270935v1_alt    158816 661 +    197351 GAAGACGCCATTCCTG------TGCTTAC------------TGGGATGG---------------CACCATGACTGGCTGAGGCGGACAGCAATTCGGTTGTTGACTGGGTTGTGTGACTGTCCCTGGAGGGGTTTGATGAAAACCTTGTCGTCTCTCCTGAGGTGGATATTCCTTCGCTT------CCTGAAGGTGT-TGTGCCACTCGCCCCGGATGAGGAAGGGGTAGCTGTGCCCGCTGAGGTGGTTCGTGACCCTGAGGAG--GCCGGTTCGCTGGTCTGTGTTTGTCCAGAGGCCTCTGTGCTCTCAGCCTGGTGGGTATGGGTCATGGCTGCTGCTGTGTCAGG---TGAGGTGCTGGCAGAGGCTGATGTCCATTGTCCTTCTGGGCCCCCTGGTGTTGACACTACAGAGTTGGCCAGAGTAAGGGCACCTGTTTTGGAAAGTGA------------CGTGCCTCCTGAGGGCCCCAGGGTGGCATCATGGCTGCTGGGTGCTGCCTGCAGTGCTGTGGTCGGGGC----------CTGGGTTGTG-TGA-CCATCCCCGGTGGGAGCTGGGGCAAAGGTTGTTGCTGCACTTATGGTGGGTGCGTCCTGAGGAACAATTTCTGAGGGCGAGTGCCCACTGGCTGTGAAGGAAGAACCTG------------GGGTGGTGAC-----------TGTCTTGG---TGTCAGTC--ATGGGGGAGACG----------------GACCTCG-TGGTTTGTGATTCTTGTG-
s rheMac3.chrUn_JH291127       56467 652 +    111706 GCAGACACCATTCCTG------TGCTTAC------------TGGGGTGG---------------CATCATGACTGGCTGAGGCAGATAGCAATTCGGTTGTTGACTGGGTTGTGTTACTGTCCCTGGAGGGGTTTGGCGAGAACCATGTGGTCTCTCCTGTGATGGATATTCCTTCGCTT------CCTGAAGGTGT-TGTGCTGCTCGCCCTGGATGAGGAAGGGGTAGCTGTGCCCTCTGAGGTGGTGCCCGACCCTGAGGAG--GCCGGTTCACTGGTCTGTGTTTCTCCAGAGGCCTCTGTGCCTTCAGCCTGGTGGGTTTGGGTCATGGCTGCTGCTGTTTCAGG---TGAGGTGCTGGCAGAGGCTGATGTCCATCGTCCTTCTGGGACCCCTGGTGTTGACACTACA-------CCAGG--AAGGGCACCTGTTATGGAAAGTGA------------TGCGCCTCCTGAGGGCGCCAGGGTGGAGTCAGGGCTGCTAGGTGCCGCCTGCAGTACTGTGGTTGGGGC----------CTGGGTTGTG-TGA-CCATCCCCAGTGGGAGCTGGGGCAAAGGTTGTCGCTGCACTTATGGTAGGTGCGTCCTGAGGAGCAATTTCTGAGGGTGAGTGCCCACTGGCTGTGAAGGAAGAGCCTG------------GGGTGGTGAC-----------TGTCTTGG---TGTCAGTC--ACAGGGGAGATG----------------GACCTTG-TGGTTTGGGATTCTTGTG-
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 87478 652 - 187378091 GCAGACACCATTCCTG------TGCTTAC------------TGGGGTGG---------------CATCATGACTGGCTGAGGCAGATAGCAATTCGGTTGTTGACTGGGTTGTGTGACTGTCCCTGGAGGGGTTTGGCGAGAACCATGTGGTCTCTCCTGTGATAGATATTCCTTCGCTT------CCTGAAGGTGT-TGTGCTGCTCGCCCTGGATGAGGAAGGGGTAGCTGTGCCATCTGAGGTGGTGCCCGACCCTGAGGAG--GCCGGTTCACTGGTCTGTGTTTCTCCAGAGGCCTCTGTGCCTTCAGCCTGGTGGGTTTGGGTCATGGCTGCTGCTGTGTCAGG---TGAGGTGCTGGCAGAGGCTGATGTCCATCGTCCTTCTGGGACCCCTGGTGTTGACACTACA-------CCAGG--AAGGGCACCTGTTATGGAAAGTGA------------TGCGCCTCCTGAGGGCGCCAGGGTGGAGTCAGGGCTGCTGGGTGTGGCCTGCAGTACTGTGGTTGGGGC----------CTGGGTTGTG-TGA-CCATCCCCAGTGGGAGCTGGGGCCAAGGTTGTCGCTGCACTTATGGTAGGTGTGTCCTGAGGAGCAATTTCTGAGGGTGAGTGCCCACTGGCTGTGAAGGAAGAGCCTG------------GGGTGGTGAC-----------TGTCTTGG---TGTCAGTC--ACAGGGGAGATG----------------GACCTTG-TGGTTTGGGATTCTTGTG-
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               435228 652 -  91754291 GCAGACACCATTCCTG------TGCTTAC------------TGGGGTGG---------------CATCATGACTGGCTGAGGCAGATAGCAATTCGGTTGTTGACTGGGTTGTGTGACTGTCCCTGGAGGGGTTTGGTGAGAACCATGTGGTCACTCCTGTGATGGATATTCCTTCGCTT------CCTGAAGGTGT-TGTGCCGCTCGCCCTGGATGAGGAAAGGGTAGCTGTGCCCTCTGAGGTGGTGCCCGACCCCGAGGAG--GCCGGTTCACTGGTCTGTGTTTCTCCAGAGGCCTCTGTGCCTTCAGCCTGGTGGGTTTGGGTCATGGCTGCTGCTGTGTCAGG---TGAGGTGCTGGCAGAGGCTGATGTCCATCGTCCTTCTAGGACCCCTGGTGTTGACACTACA-------CCAGG--AAGAGCGCCTGTTATGGAAAGTGA------------TGCACCTCCTGAGGGCGCCAGGGTGGAGTCAGGACTGCTAGGTGCCGCCTGCAGTACTGTGGTTGGGGC----------CTGGGTTGTG-TGA-CCATCCCCAGTGGGAGCTGGGGCAAAGGTTGTCGCTGCACTTATGGTAGGTGCGTCCTGAGGAGCAATTTCTGAGGATGAGTGCCCACTGGCTGTGAAGGAAGAGCCTG------------GGGTGGTGAC-----------TGTCTTGG---TGTCAGTC--ACAGGGGAGATG----------------GACCTTG-TGGTTTGGGATTCTTGTG-
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               958117 679 -  74750902 GGGGACCCCGTTCCCA------TGCTTGC------------CAGGATGGTGCTTGCCCGAGTGACGTCCGGACTGGCTGAGGGGGACGGCAATTCGCTTGTTGACTGGGGGATGTGAGTGTCCCTGGAGGGTCTTGGTGAGAACCGCGTGGTCTCCCCTGAGGTGGACATTCCGTGGCTT------CCTGAAGGTGT-TGTGCCACTTGTCCTGGATGAGGAAGGGGTAGCTGTGCCAGCTGGGATGGGGCCTGACCCTGAGGAG--GCCGGTTGGCTGGTCTGTGTTTCTCCGGAGGCCTCTGTGCCCCGAGCCTGGTGGGGTTGGGTCATAGCGGGTGCTGTGCTGGG---TGACGTGCTGGCAGAGGCTGATGTCCATCGTCCTTCTGCATCCACTGGTGTTGACACCGCAGAGGTGGCCGGAGGAATGGTGCCTGTGATGGAAAGCGA------------TGTGCCTCCTGAGGGCCCCAGGGTGGCGTCAGGGCTGCCGGGTGCTGCCTGCGGTGCTGTGGCTGGGGC----------CTGGGGCCTG-TGA-CCGTCCCTGGAGGGGGCTGGGGTGAAGGTTGTTGCTGCACTGACGGCGGATGCGTCCTGAGGAACAGTTTCTGAGGGCGAGTGTCCGCTGGCTGTGAAGGAAGAAGCTG------------GGGTGGTGGC-----------TGTCTTGAGGCTGTCAGTC--ACGGGGGAGACG----------------GACCTCG-TGGTTTGGGATTCTCGTG-
i calJac3.chr17            I 1047 C 0
s canFam3.chr33             29087056 709 +  31377067 TGTGATGTCATTGGTGATGTGTTGCTTCCACTGGAAGATCTTGAAGTGT---------------CCCCAGGGGAGGCTGATGGTGTGGGTATTTCTGTCACTGCGGAAGGTGTGTGGCTGACACTGGAAAGGGATGAAGTGCTTGGTGTG------TCAGACAAGGCCATGTCCTGGGTTGAGTCATCTGTAGGTGTGTGTTCACTTCG----GGAGGATGAGGGAGTGGATGTGATCATCG---------------CTGAGACACTGCTGGTTGCAGACTCTGTGCT--------GGTCTCCATGGTCTGGGTCGTGTAACCCTGAG--ATGACT-CTGTTGTCTCTGGAGTAGAAGTCAGGGAAGAGTGTGCTGGTGAGTGTCCCCCTGGTCCACCTGTCATTGAGCCTGTTGAGCTGACTGGAGTAACACTTCCCGTTTCAGGTGGTGACGTGTGCCTTGTTGTGCCTGCTGGGGTGTCT--GTTGCCATCAGTGTCGTCAGG----ACCTGTGATACTGTTGGTGATGTGCTGCTTTCACTGGAAGATGATGAGGTGTCCCCAGGGGAAGCTGATGGTGTGGGTATTTCTGTCACTGCGGAAGGTGTGT------GGCTGACACTGGAAGGGGACGAACTGCTTGGTGTGTCAGACAAGGCTGTGTCCATGTCCTGGGTCGTGCCATCTGTAGGAGTGTCTCCT---CTTCGGGAGGATGAGGGAGAGGATGTGATCATCGCTGAGACACTGCTGGCTCCAGACTCT-GTGC
i canFam3.chr33            C 0 C 0
e mm10.chr16                65449197 1915 -  98207768 I
e macFas5.chr2                 98696 5347 + 192460366 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891   0 + 123690457 C
e panTro4.chr3             199795713 3000 + 202329955 M

a score=118999.000000
s hg38.chr3_KI270935v1_alt    159477 132 +    197351 TGGTCTGCGGGGCTTGAGTGTGACCCCTTTGGGAAACAGCTGGTGATTCCTGAGGAGAGGTGCTTGTGGAATGTATTGTTGAATGATTT---GTTGATGGTGCCGTTGTAATTT--GTTGTGATGTGTGTCTATCCA
s rheMac3.chrUn_JH291127       57119 132 +    111706 TGGTCTGCGGGGCTTGAGTGTGACCTCTCTGGGAAACAGCCAGTGATTCCTGAGGAGAGGTGTTTGTGGAATGTATTGTTGAATGATTT---GTTGATGGTGCCATTGTAATTT--GTTGTGATGTGTGTCCATCCA
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 88130 132 - 187378091 TGGTCTGCGGGGCTTGAGTGTGACCTCTCTGGGAAACAGCCAGTGATTCCTGAGGAGAGGTGTTTGTGGAATGTATTGTTGAATGATTT---GTTGATGGTGCCATTGTAATTT--GTTGTGATGTGTGTCCATCCA
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               435880 132 -  91754291 TGGTCTGCGGGGCTTGAGTGTGACCTCTCTGGGAAACAGCCAGTGATTCCTGAGGAGAGGTGTTTGTGGAATGTATTGTTGAATGATTT---GTTGATGGTGCCATTGTAATTT--GTTGTGATGTGTGTCCATTCA
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               958796 132 -  74750902 TGGTCTTCGAGGCTGGAGTGTGACCTCTGTGGGAAACAGCCGACGGTCTCCGAGGAGAGGTGCTCACAGGGTGTGTTGTTGGAGGATAT---GTTGACGGTGCCGTTGTACTTT--GTGGTGGTGTGTGTCCATCCA
i calJac3.chr17            C 0 C 0
s mm10.chr16                65451112 137 -  98207768 TGGTCTCCATGTTTCCAGTGTGTTGTCTCTGAGGAAGTGATGTTAATTCCTGTGAAGAAGTGCTGGGCATTGACACTGTTGACATATTCTGGGATGAAGGTGTCAATGAGACCTGGGTGGTGGCAAGTGTAGAACCA
i mm10.chr16               I 1915 I 619
s canFam3.chr33             29087765 118 +  31377067 TGATCTCCATGGCCTGGGTGGAGTGACCCTGAGATGACTCTGTTGTCTCCAGAGTAGAAGTCAGGGAAGAGTGTGCTGTTGAGTGTCCC---CCTGGT----------CCACTT--GTCATTAGGCCTGTTGA----
i canFam3.chr33            C 0 C 0
e macFas5.chr2                 98696 5347 + 192460366 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891   0 + 123690457 C
e panTro4.chr3             199795713 3000 + 202329955 M

a score=310257.000000
s hg38.chr3_KI270935v1_alt    159609 420 +    197351 GCATAGGTGAAGAAGATGGGGATGTGGCCGTTTTTATCATCTG-AGTCACACTGTAGCTTGGGCTGCTGAGAAGAGCCTCTCCAGTGGTCCCCGTTTCTTGTGTCCATTGTGTCTGGGCGCCTGCCCCTGTTGTTTTTGGGAGAGTTGTGCTGTG----GGAGGAGTAT----GTGGTGGGCTCTCCTGGTTCCCCTATTGCTGAGACCTTAGAGGGGACCCTTGGAATAGTGCCAGCTGCCCCTG---TAGATGGATTTCCTGTGACAAGCCTAGTG-GCAGCACCTGTTGATGTTGAGGGCAGTTCTGTTTGTGACCAAGTTGTGTGGCCTTTGCTGGAGAATGAGGAAGGCCATGTTGTTGTTTCATGTAGAGTAAATATTTCTTGAGACACACCTGG----AGAGAATGAGCTCCTCTCATGAGGCCGTCCTG
s rheMac3.chrUn_JH291127       57251 423 +    111706 GCATAGGTGAAGAAGATGGGGATGTGGCCGTATTTATCATCTG-AGTCACACTGTAGCTTGGGCTGTTGATAGGAACCTCTCCAGTGGTCCCCGTTTCTTGTGTCCATTGTGTCTGGGCACCTGCCCCTGTTGTTTCCAGGAGAGTTGTGCTGTG----GGAGGGGTGT----GTGGTGGGCTGTCCTGATTCCCCTATTGTTGAGACCTCAGAGGGGACCCTTGGAATAGTGCCAGCTGTCCCTGGCACTATTGGACTTCCTGTGACAAGCCTAGTG-GCAGCACCTGTTGGTGTTGAGGGCAGTTCTTTTGGTGAGCGAGTTGTGCGGTCTTCACTGGAGAATGAGGAAGGCCATGTTATGGTTTCATGTGGAGGAAATGTCTCATGAGACACACCTGG----AGACACTGAACTCCTCTCATAAGGCCGTCCTA
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 88262 423 - 187378091 GCATAGGTGAAGAAGATGGGGATGTGGCCGTATTTATCATCTG-AGTCACACTGTAGCTTGGGCTGTTGATAGGAACCTCTCCAGTGGTCCCCGTTTCTTGTGTCCGTTGTGTCTGGGCACCTGCCCCTGTTGTTTCCAGGAGAGTTGTGCTGTG----GGAGGGGTGT----GTGGTGGGCTGTCCTGATTCACCTATTGTTGAGACCTCAGAGGGGACCCTTGGAATAGTGCCGGCTGTCCCCGGCACTATTGGACTTCCTGTGACAAGCCTAGTG-GCAGCACCTGTTGGTGTTGAGGGCAGTTCTTTTGGTGAGCGAGTTGTGCGGTCTTCACTGGAGAATGAGGAAGGCCATGTTATGGTTTCATGTGGAGGAAATGTCTCATGAGACACACCTGG----AGAGACTGAACTCCTCTCATGAGGCCATCCTA
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               436012 417 -  91754291 GCATAGGTGAAGAAGATGGGGTT------GTATTTATCATCTG-AGTCACACTGTAGCTTGGGCTGTTGATAGGAACCTCTCCAGTGGTCCCCGTTTCTTGTGTCCATTGTGTCTGGGCACCTGCCCCTGTTGTTTCCAGGAGAGTTGTGCTGTG----GGAGGGGTGT----GTGGTGGGCTGTCTTGAATCCCCTATTGTTGAGACCTCAGAGGGGACCCTTGGAATAGTGCCAGCTGTCCCTGGCACTATTGGACTTCCTGTGACAAGCCTAGTG-GCAGCACCTGTTGGTGTTGAGGGCAGTTCTTTTGGTGAGCGAGTTGTGCGGTCTTCACTGGAGAATGAGGAAGGCCATGTTATGGTTTCATGTGGAGGAAATGTCTCATGAGACACACCTGG----AGAGACTGAACTCCTCTCATGAGGCCGTCCTA
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               958928 408 -  74750902 GCATCGGTGAGGAAGGGGGCGATGTGGCTGCTTTTGTCATCTG-GGTCACACTGTATCTTGGGCTGTGGACAAGAACCTCTCCAGTGGTCCCCATTTCTTGTGTCCATTGTGTCTGGGCACTTGCCCCTGTTGTTTCTGGGAGAGCTGTGCTATG----GGAGGGGCGT----GTGGTGGGCTGCCCTGGTTCCCCTATTGTTGAGACCTCAGAAGGGACTCCTGGAATAGTGCCAGTTGTCCACG---TAGATGGACTTCCTGTGACCAGCATAGTG-GCAACACTTGTTGGTGTTGAGGGCAGCTCTTTTGGTAACCAAGTTGTGAGGCCTTCGCT---------GGAAGTCAGTGTT---GTTTCATGTGGAGTAAACGTCTCATGAGACACACCTGG----AGAGACTGAGCTCCTTTCATGAGGCCGTCCTG
i calJac3.chr17            C 0 C 0
s canFam3.chr33             29087883 350 +  31377067 GCTGATGTGGGTAACA-------------CTTCCCATTACCGGTAGTGACG-TGTGCCTTGTGGT------------TCCTGCTGAGGTGTCTGTTGCAATTGGTGGTGTTGTCGGGACCTCTGATGTCGTTGCTGATGTGTTGCTTACACTGGGAACCAAAGAGGTGTCACCAGGGGAGGCTG--ATGGTGTGGGTATTTCTGTCACTGCGGAAGGT------------GTG-TGGCTGACACTG---GAAAGGGA-------TGAAGTACCTGGTGTGTCAGACAAGGCCATGTCCTGGGTCGAGTCATCTGT-----AGGTGTGTGTTCACTTCGGGAGGATGAGGGAGAGGATGTGATCATCGC-------------------TGAGACACTGCTGGTTGCAGACTCTGTGCTGGTCTCCA------------
i canFam3.chr33            C 0 C 0
e mm10.chr16                65451249 619 -  98207768 I
e macFas5.chr2                 98696 5347 + 192460366 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891   0 + 123690457 C
e panTro4.chr3             199795713 3000 + 202329955 M

a score=256482.000000
s hg38.chr3_KI270935v1_alt    160029 279 +    197351 TGGTCTCTGCACCTTCACTCTGCTGGGTGTGGAAAGCTGTGGATATTTTTGGAGGTAGAGAACTGGGGGAGAGTGCTGTTGACAGAGTGTCTGACCA------CCATATGGTTGAAACTTTGGAAGTGATTGCAGAAATGGTTCCAC---TTACAGATAGTGATGTCTCCTCTGTGTTTCCAAGAGTAGAGTCTCTGGAGATTGGCATTCTGAACACCTTTGATGTTACCAGGAATGTATTGCTGACACTGGAAGG------------------------GGATGAGATGGTTGTTT---------------------------CACCAGAAGGGAATG
s rheMac3.chrUn_JH291127       57674 279 +    111706 TGGTCTCTGCACCTTCACTCTGCTGGGTGTGGAAAGCTGTGGATATTTTTGGAGGTAAAGAACTGGGGGAGAGTGCTGTTGACAGTGTGTCTGACAA------CCATATGGTTGAAACTCTAGAAGTAATTGCAGAAATGGTTCCCC---TTACAGGTAGTGATATTTCCTCTGTGTTTCCAAGAGTAGAGTCTCTGGAGGTGGGCATTCTGAACACCTCTGATGTCACCAGGAATGCGTTGCTGACACTGGAAGG------------------------GGATGAAGTGGTTGTTT---------------------------CACCAGAAGGGAATG
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 88685 279 - 187378091 TGGCCTCTGCACCTTCACTCTGCTGGGTGTGGAAAGCTGTGGATATTTTTGGAGGTAAAGAACTGGGGGAGAGTGCTGTTGACAGTGTGTCTGACAA------CCATATGGTTGAAACTCTAGAAGTAATTGCAGAAATGGTTCCCC---TTACAGGTAGTGATATTTCCTCTGTGTTTCCAAGAGTAGAGTCTCTGGAGGTGGGCATTCTGAACACCTCTGATGTCACCAGGAATGCGTTGCTGACACTGGAAGG------------------------GGATGAAGTGGTTGTTT---------------------------CACCAGAAGGGAATG
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               436429 279 -  91754291 TGGTCTCTGCACCTTCGCTCTGCTGGGTGTGGAAAGTTGTGGATATTTTTGGAGGTAAAGAACTGGGGGAGAGTGCTGTTGACAGTGTGTCTGACAA------CCATATGGTTGAAACTCTAGAAGTAATTGCAGAAATGGTTCCCC---TTATAGGTAGTGATATTTCCTCTGTGTTTCCAAGAGTAGAGTCTCTGGAGGTGGGCATTCTGAACACCTCTGATGTCACCAGGAATGTGTTGCTGACACTGGAAGG------------------------GGATGAAGTGGTTGTTT---------------------------CACCAGAAGGGAATG
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               959336 279 -  74750902 TGGTCTCTGCACCCTCACTCGGGTGGGTGTGGAAAGCTGGGGGTAGTTTTGGAGGTAAAGAACTCGGGGAGAGTGCTGTTGACAGGGTGTCTGACCA------CCATCTGGTTGAAACTTGAGAAGTGATGGCAGAAGTCGTTCCCC---TTACAGATCGCGCTGTCTCCTCTGTGTTTCCAAGAGTAGAAGCTGCGGAGGTTGGCATTCGGGACACCTCTGATGTTACCAGGAATGCGCTGCTGACACTGGAAGG------------------------GGACGAAGTGGTTGTTT---------------------------CAGCATAAGGGAGTG
i calJac3.chr17            C 0 C 0
s mm10.chr16                65451868 279 -  98207768 TGGTCCCCATGTTTTCAGTGTGTTGGCTCTGAGGAAGGGGTGACAATTTGTGAGTAGAAGTGATGGGTGTTGACACTGTTGACATATTCTGGGACGAAGGTGTCAATGTGGT-----CTGT----GTGGTGGCAGGTGTAGAACCTTGAGTCACTATTGCTGTTGTGTGTCTTGTGTCTCCTGAGGTAATTTCAGTGGAGGATGCTGTGGATAACATGTGTGTTGAACTTGGAGCTGAACTGCTCAAGCTGGAAGC------------------------ATGTGAGGTGGTTGTCT---------------------------CACCAGGAGAGATTG
i mm10.chr16               I 619 C 0
s canFam3.chr33             29088233 321 +  31377067 TGGTCTGGG---------TGGAGTGACCCTGAGATGACGCTGTTGTCTCTGGAGTAGAAGTCAGGGAAGAGTGTGCTGTTGAGTGTCCCCCTGGTCC------ACTTGTCATTGAGTCTGTTGAGCTGACTGGTGTAACACTTCCTG---TTTCAGGTGGTGACGTGTGTCCCGTGGTTCCTGCTGGGGTGTCTGATGCAATCAGTGTCGTCGGGACCTGTGATGTCATTGGTGATGTGTTGCTTCCACTGGAAGATCTTGAAGTGTCCCCAGGGGAGGCTGATGGTGTGGGTATTTCTGTCACTGCGGAAGGTGTGTGGCTGACACTGGAAAGGGATG
i canFam3.chr33            C 0 I 30
e macFas5.chr2                 98696 5347 + 192460366 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891   0 + 123690457 C
e panTro4.chr3             199795713 3000 + 202329955 M

a score=21315.000000
s hg38.chr3_KI270935v1_alt    160308 20 +    197351 TCTCCTGAGAAACTGTTCCA
s rheMac3.chrUn_JH291127       57953 20 +    111706 TCTCCTGAGAAACTGTTCCA
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 88964 20 - 187378091 TCTCCTGAGAAACTGTTCCA
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               436708 20 -  91754291 TCTCCTGAGAAACTGTTCCA
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               959615 20 -  74750902 TCTCCTGAGAAACTGTTCCA
i calJac3.chr17            C 0 C 0
s mm10.chr16                65452147 20 -  98207768 TTCTTTGGGAACTTGTCTCT
i mm10.chr16               C 0 C 0
e canFam3.chr33             29088554 30 +  31377067 I
e macFas5.chr2                 98696 5347 + 192460366 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C
e panTro4.chr3             199795713 3000 + 202329955 M

a score=49121.000000
s hg38.chr3_KI270935v1_alt    160328 64 +    197351 CTTGGGTTGAATC-----------------CACTTGGTGAGGATAAAACAGTTGATGTTGTAACCGGTGTGAGGGTGTTGA---------
s rheMac3.chrUn_JH291127       57973 55 +    111706 CTTGGGTTGAATC-----------------CACTTGGTGAGGATAAAACAGTTGATGTTGTAACCGGTG---------TGA---------
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 88984 55 - 187378091 CTTGGGTTGAATC-----------------CACTTGGTGAGGATAAAACAGTTGATGTTGTAACCGGTG---------Tga---------
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               436728 55 -  91754291 CTTGGGTTGAATC-----------------CACTTGGTGAGGATAAAACAGTTGATGTTGTAACCGGTG---------TGA---------
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               959635 52 -  74750902 CTCAGAGTGAGTC-----------------CACTTGGTGAGGATAAAACAGTTGA---TGCAACCAGTG---------TGA---------
i calJac3.chr17            C 0 C 0
s mm10.chr16                65452167 55 -  98207768 GTCTGAACTTGGT-----------------CACGTGAGGAAGCTGAAAGAGTTGATGTGGTCACCTCTG---------GGA---------
i mm10.chr16               C 0 I 2127
s canFam3.chr33             29088584 81 +  31377067 CCTGGGTCGAGTCATCTGTAGGTGTGTGTTCACTTCGGGAGGATGAGGGAGTGGATGTGATCATCGCTG---------AGACACTGCTGG
i canFam3.chr33            I 30 C 0
e macFas5.chr2                 98696 5347 + 192460366 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C
e panTro4.chr3             199795713 3000 + 202329955 M

a score=12960.000000
s hg38.chr3_KI270935v1_alt    160392 9 +    197351 GGGTGTTGA
s rheMac3.chrUn_JH291127       58028 9 +    111706 GGGTGTTGA
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 89039 9 - 187378091 gggtgttga
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               436783 9 -  91754291 GGGTGTTGA
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               959687 9 -  74750902 GGGTGTTGA
i calJac3.chr17            C 0 C 0
s mm10.chr16                65454349 9 -  98207768 GGGTGTTGA
i mm10.chr16               I 2127 I 2281
e canFam3.chr33             29088665 0 +  31377067 C
e macFas5.chr2                 98696 5347 + 192460366 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891 0 + 123690457 C
e panTro4.chr3             199795713 3000 + 202329955 M

a score=45880.000000
s hg38.chr3_KI270935v1_alt    160401 34 +    197351 TTTGAGATACTCTGGTGGTCTCCACGCTCTGAGT
s rheMac3.chrUn_JH291127       58037 34 +    111706 TTTGAGATACTCTGGTGGTCTCTATGCTCTGAGT
i rheMac3.chrUn_JH291127   C 0 I 378
s papAnu2.chr2                 89048 34 - 187378091 tttgagatacTCTGGTGGTCTCTATGCTCTGAGT
i papAnu2.chr2             C 0 I 378
s chlSab2.chr15               436792 34 -  91754291 TTTGAGATACTCTGGTGGTCTCTATGCTCTGAGT
i chlSab2.chr15            C 0 I 4894
s calJac3.chr17               959696 34 -  74750902 TCTGAGGTCCTCTGGTGGTCCCCACGCTCTGAGT
i calJac3.chr17            C 0 C 0
s mm10.chr16                65456639 34 -  98207768 TTTGAGGTTGTCTGCTGGTGTCCATGCTTTCAGT
i mm10.chr16               I 2281 C 0
s canFam3.chr33             29088665 34 +  31377067 TTGCAGACTCTGTGCTGGTCTCTATGGTCTGGGT
i canFam3.chr33            C 0 C 0
e macFas5.chr2                 98696 5347 + 192460366 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C
e panTro4.chr3             199795713 3000 + 202329955 M

a score=136291.000000
s hg38.chr3_KI270935v1_alt    160435 131 +    197351 CTGGTGGTTCTTAGAAAAAGCTGTTGTGTCCTGAGTAGAAGTCCTTGAGAAA-GTTG---CTGGTGATTGTCCTTCTGGATCAACTGTTACTAAGGCTGCTGAGGTGACTGGCATAAGACTTCCAGTAACAGGTA
s rheMac3.chrUn_JH291127       58449 131 +    111706 CTGGTGGTTCTGAGAAAAACCTGTAGTGTCCTGAGTAGAAGTCCTTGAGGAA-GTTG---CTGGTAATTGTCCTTCTGGCTCAGCTGTTATTGAGGCTGCTGAAGTGACTGGCATAAGACTTCTTGTAACAGGTA
i rheMac3.chrUn_JH291127   I 378 C 0
s papAnu2.chr2                 89460 131 - 187378091 CTGGTGGTTCTGAGAAAAATCTGTTGTGTCCTGAGTAGAAGTCCTTGAGGAA-GTTG---CTGGTAATTGTCCTTCTGGCTCAGCTGTTATTGAGGCTGCTGAAGTGACTGGCATAAGACTTCTTGTAACAGGTA
i papAnu2.chr2             I 378 C 0
s chlSab2.chr15               441720 131 -  91754291 CTGGTGGTTCTGAGAAAAACCTGTTGTGTCCTGAGTAGAAGTCCTTGAGGAA-GTTG---CTGGTAATTGTCCTTCTGGCTCAGCTGTTATTGGGGCTGCTGAAGTGACTGGCATGAGACTTCTTGTAACAGGTA
i chlSab2.chr15            I 4894 C 0
s calJac3.chr17               959730 128 -  74750902 CTGCTGGTTCTGAGGAAAAGCTGTTGTGTACTG---AGAAGTCCTTGAGAAA-GTTG---CAGAGGATTCTCCTTCTGGTTCGACTGTTATTGAGGCTACTGAGGTGACTGGCATAAGACTTCCTGTAACAGGTA
i calJac3.chr17            C 0 I 1845
s mm10.chr16                65456673 125 -  98207768 GTGTTGGTTCTGAGGAAGGGTTGACATTTTTTGACTTGAA----TTGATGAGTGTTGACACTGGTGACAGTTTTTGTGGTGTAGATGTTGTTGAGACTTTCGTGGTATGTGTTGTAGAGTTCTGAGTAA------
i mm10.chr16               C 0 C 0
s canFam3.chr33             29088699 131 +  31377067 CATGTGACCCTGAGATGACGATGTTGTCTCTGGAGTAGAAGTCAGGGAAGAG-TGTG---CTGGTGAGTGTCCCCCTGGTCCACCTGTCATTGAGTCTGTTGAGCTGACTGGTGTAACACTTCCCGTTTCAGGTG
i canFam3.chr33            C 0 C 0
e macFas5.chr2                 98696 5347 + 192460366 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891   0 + 123690457 C
e panTro4.chr3             199795713 3000 + 202329955 M

a score=451241.000000
s hg38.chr3_KI270935v1_alt    160566 496 +    197351 CT-GATGATGTCTCCCC-----TGGGTTTCCAAGAGTGGAGCCTGT------------------------------------------------------------------------------GGAGGTTGTCACTGTTATCTTCTCTGATGTCATCATGGATGTGTTTGTGACACTACAGAGGGATGAGGTAGCTGTTTCACCTGAAGGAGATGTCTTCtgagaaacagtccctgtcaca-ttgtgtacacttggagaGAAAGAAGGAGTTGAAGTGGTTCTGTGTGTTAGGGTGCTGGTTTGAGATTCCCTGGTGGTCTGCGTGCTCCGAGTCCAGTGGTTCTGAGAAGAAGCTGATGTGTCTTGGATAGAGGTCCTCCAGGAAGTTGTTCGTGATTGTCCTTCCTGTCCAGCTGTTATTGAGACTGCTGAGGTCACTGGGGTAGAACTTTCAGTTCCTGCTGTTGATGTCTCTTCTGTGTTTCCAAGAGTG---------------GAGTCTGTGGAG---------GTTGTCATTGTTATAGTCTTT--------------GATGTCATCATG-------------------------------------AGTGTGTTGGTGACACTGGAGGGAAATGATGTGGTCATTTC
s rheMac3.chrUn_JH291127       58580 493 +    111706 C----TGATGTCTCCCC-----TGTGTTTCCAAGAGTGGAGTCTGT------------------------------------------------------------------------------GGAGGTTGTCGTTGTTATCTTCTTTGATGTCATCATGGGTGTGTTTGTGACACTAAAGAGGGATGAGGTAGTTGTTTCACCTGGAGGAAATGTCTTCTGAGAAATAGTCCCTTTCACA-TTGTGTACACTTGGGGAGACGGAAGGAATTGATGTGGTTCTCTGTGTAAGAGTGCTGGTTTGAGATTCTTTGGTGGTCTCAGTGCTCTGAGTCTGGTGGTTCTGCGAAGAAGCTGATGTGTCCTGGATAGAAGTTCTTGAGGACGTTGTTCGTGATTGTCCTTCCAGTTCAGCTGTTATTGAGACTGCTGAGGTCACTGGGGTAGAACTTTCAGTTCCTGGTGTTGATGTCTCTTCTATGTTTCCAAGAGTG---------------GAGTCTGTGGAG---------GTTGTCATTGCTATAGTCTTT--------------GATGTCATCATG-------------------------------------AGCGTGTTGGTGACACTGGAGGGAAATGATGTGGTCATTTC
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 89591 493 - 187378091 C----TGATGTCTCCCC-----TGTGTTTCCAAGAGTGGAGTCTGT------------------------------------------------------------------------------GGAGGTTGTCGTTGTTATCTTCTTTGATGTCATCATGGGTGTGTTTGTGACACTAAAGAGGGATGAGGTAGTTGTTTCACCTGgaggaaatgtcttctgagaaATAGTCCCTTTCACA-TTGTGTACActtggggagaaggaaggaattgATGTGGTTCTCTGTGTAAGAGTGCTGGTTTGAGATTCTTTGGTGGTCTCAGTGCTCTGAGTCTGGTGGTTCTGCGAAGAAGCTGATGTGTCCTGGATAGAAGTTCTTGAGGACGTTGTTCGTGATTGTCCTTCCAGTTCAGCTGTTATTGAGACTGCTGAGATCACTGGGGTAGAACTTTCAGTTCCTGGTGTTGATGTCTCTTCTGTGTTTCCAACAGTG---------------GAGCCTGTTGAG---------GTTGTCATTGTTATAGTCTTT--------------GATGTCATCATG-------------------------------------AGTGTGTTGGTGACACTGGAGGGAAATGGGGTGGTCATTTC
i papAnu2.chr2             C 0 I 1837
s chlSab2.chr15               441851 493 -  91754291 C----TGATGTCTCCCC-----TGTGTTTCCAAGAGTGGAGTCTGT------------------------------------------------------------------------------GGAGGTTGTCGTTGTTATCTTCTTTGATATCATCATGGGTGTGTTTGTGACACTAAAGAGGGATGAGGTAGTTGTTTCACCTGGAGGAAATGTCTTCTGAGAAATAGTCCCTTTCACA-TTGTGTACACTTGGGGAGAAGGAAGGAATTGATGTGGTTCTCTGTGTAAGAGTGCTGGTTTGAGACTCTCTGGTGGTGTCTGTGCTCTGTGTCTGGTGGTTCTGCGAAGAAGCTGATGTGTCCTGGATAGAAGTCCTTGAGGACGTTGTGTGTGATTGTCCTTCCAGTTCAGCTGTTATTGAGACTGCTGAGATCACTGGGGTAGAACTTTCAGTTCCTGGTGTTGATGTCTCTTCTATGTTTCCAAGAGTG---------------GAGTCTGTGGAG---------GTTGTCATTGCTATAGTCTTT--------------GATGTCATCATG-------------------------------------AGCGTGTTGGTGACACTGGAGGGAAATGATGTGGTCATTTC
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               961703 496 -  74750902 -CAGTTGATGTCTCTGC-----TGTGTTTCCAAGAGTGGAGTCTGT------------------------------------------------------------------------------GGAGGCTGCCATTGTTATAGTCTTTGATACCATCACGGGTATGTTCGTGACACTAGAGAGGGATGAGGCAGCTGTTTCACCTGGAGGAGATGTGTCCTGAGAAACAGTCCCTGTCACA-TTGTGTGCACTTGGGGAGGAGGAAGGAGTTGATGTGATCATCTGTGTGAGGGTGCTCCTTTGAGATTCCCTCGTGGTCTCTGTGCTCTGAGTCTGGTAGTTCTGAGAAGAAGCTGATGTGTCCCAGATAGAGATCCTCGAGGAAGCCGCTGTCCATTGTCCCTCTGGCTCAGCTGTTATGGAGGCTGCTGAAGGGACTGGAGTGGGACTTCTAGTTCTAGGGGTTGATGTCTCCTCAGTGATATTAGAAGTG---------------GACTCTGTGAGG---------GTTGTCACTGTTATAGTCTTT--------------GATTTCATTATG-------------------------------------GGTGTGTTGCTGACACTGAAGGGGAATGAGGTGGTCATTTC
i calJac3.chr17            I 1845 C 0
s mm10.chr16                65456798 463 -  98207768 ------------TCCTCAGAGTTGTGTTTCCTGGAGCAGAGTCTGT------------------------------------------------------------------------------AGAGGATGTTTGGGTGAGCACTTCTGTTGTAGTTAGTGATGTACTGCTGACACCAGAAGTAGATGGCTTGGTTCTTTTATCTGAAGATGATGTCACTTGAGACATTGTCTGTGCAGGAGTTGAGT-CACTTGTAGAGGTTGAAAGAGTTGATGTGACT------------ATGTTGACTTGAGATTTGCTGCTGGTCTGCTTGCTTCCAGTGTGTTGTCTCTGAGTAAGAGTTGAGGT------GATGGGTGTT------GACACTGT---TGACATATTCTGGGATGAAGGTGTCAGTGAGACTTGTGCGGTGGCAGGTGTTAAACCTTGAGTTGTTATTGCTGTTGTGTGTCCTGAGTCTACTGAGGTA---------------CTTTCTGTGGAG---------GATGTTGTGGTTAACATGTGT--------------GTTGTACTTGGA-------------------------------------GCTGAGCTGCTGATACTGGGAGCATGTGAGGTGGTTGTTCC
i mm10.chr16               C 0 C 0
s canFam3.chr33             29088830 646 +  31377067 ----GTGACGTGTGTCC-----CGTGGTTCCTGCTGGGGTGTCTGTTGCAATCGATGTCGTCGGGACCTGTGATGTCGTTGCTGATGTGTTGCTTCCACTGGAAGATCTTGAAGTGTCACCAGGGGAGGCTGATGGTGTGGCCATTTCTGATAGTGTGGGAACTGTGTGGCTGACACTGGAAGGGGACGAAGTGTTTGGTGTGTCAGACAAGGCCGTGTCCTGGGTCGAGTCATCTGTAGTT-GTGTGTTGACTTTGGGAGGATGAGGGAGAGGATGTGATCATCGCTGAGACACTGCTGGTTGCAGACTCTGTGCTGGTCTCCATGGTCTGGGTCGTGTGACCCTGAGATGACACTGTTGTCTCCGGAGTAGAAGCCAGGGTGGAATGTGCTGTTGAGTGTCCCTCTGGTCCACTTGTCATTGAGCCTGTTGAGCTGACTGGAGTAACACTTCCCGTGACACCTGGTGGCATGAGCCCTGTGTTGCCAGCAGTGCTGTTTCCTACTATTGACTCTGTGGGGACGTGTGATGTTGTTGCTGATGTGTTGCTTTTGCTGGAAGATGAGGTGTCCCCAGGGGAGGCTGATGGTGTGGCCCTTTCTGTCACTGCAGAAGGTGTGTGGCTGACGGTGGAAGGGGACGAAGTGCTTGGTGT
i canFam3.chr33            C 0 C 0
e macFas5.chr2                 98696 5347 + 192460366 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891   0 + 123690457 C
e panTro4.chr3             199795713 3000 + 202329955 M

a score=47494.000000
s hg38.chr3_KI270935v1_alt    161062 61 +    197351 ATCTGGAGGAGCTGTCTCCTGCGTAACAGTCTCCATCACATTGTGTACACTTGGGGAAGAA
s rheMac3.chrUn_JH291127       59073 61 +    111706 ATCTGCAGGAGACGTCTTTTGAGAAACAGTCTCCATCCCATTGAGTACACTTGGGGAAGAG
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                 91921 61 - 187378091 ACCTGGAGTAGATGTCTCCTGAGAAACAGTCTCTGTCACACTGTGTACACTTGGGGAGGAT
i papAnu2.chr2             I 1837 C 0
s chlSab2.chr15               442344 61 -  91754291 ATCTGCAGGAGACGTCTTTTGAGAAACAGTCTCCATCCCATTGAGTACACTTGGGGAAGAG
i chlSab2.chr15            C 0 I 753
s calJac3.chr17               962199 61 -  74750902 ATCCGGAGGGGATGTCTCCTGAGGAACAGCGTCTGTCACATTCAGTACACTTGGGGAAGAG
i calJac3.chr17            C 0 C 0
s mm10.chr16                65457261 61 -  98207768 ATCAGGAGAGATTGTTCTTTGAGAACTTGTCTCTGTCTGTATTTGGTCACGTGAGGAGGCT
i mm10.chr16               C 0 C 0
s canFam3.chr33             29089476 61 +  31377067 GTGAGACATGGTCGTGTCCTGGGTTGTGCCATCTGTAGGAGTGTCTCCTCTTTGGGAGGAT
i canFam3.chr33            C 0 C 0
e macFas5.chr2                 98696 5347 + 192460366 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C
e panTro4.chr3             199795713 3000 + 202329955 M

a score=3225.000000
s hg38.chr3_KI270935v1_alt    161123 2 +    197351 AA
s rheMac3.chrUn_JH291127       59134 2 +    111706 GA
i rheMac3.chrUn_JH291127   C 0 I 2256
s papAnu2.chr2                 91982 2 - 187378091 GA
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               443158 2 -  91754291 GA
i chlSab2.chr15            I 753 C 0
s calJac3.chr17               962260 2 -  74750902 GA
i calJac3.chr17            C 0 C 0
s mm10.chr16                65457322 2 -  98207768 GA
i mm10.chr16               C 0 C 0
s canFam3.chr33             29089537 2 +  31377067 GA
i canFam3.chr33            C 0 C 0
e macFas5.chr2                 98696 5347 + 192460366 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891 0 + 123690457 C
e panTro4.chr3             199795713 3000 + 202329955 M

a score=95649.000000
s hg38.chr3_KI270935v1_alt    161125 97 +    197351 AAGAGTTGATGTCATCATCTGCGTGAGGGTGTCGGTTTGAGCTTTGCTGGTGGTCTCCGTGCTCTTAGTCTGGTGGTTCTGAGATGAAGCTGATATG
s rheMac3.chrUn_JH291127       61392 97 +    111706 AAGAGGTAATGTGGACATCTCTGTGAGGGTGCTGGTTTGAGACTCTCTGGTGGTGTCTGTGCTCTGTGTCTGGTGGTTCTGCAAAGAAGCTGATGTG
i rheMac3.chrUn_JH291127   I 2256 C 0
s papAnu2.chr2                 91984 97 - 187378091 AAAAGTTAATGTGGCCATCTGTGTGAGGGTGCCAGTTTCAGATTCTCTGGTGGTCTCCATGCTCTTAGTCTGGTGGTTCTGAGATGAAGCTGATATG
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               443160 97 -  91754291 AAGAGTTGATGTTATCATCTGTGTGAGGGTGCCAGTTTGAGCTTTGCTGGTGGTCTCTATGCTCTGAGTCTGGTGGTTCTGAGAAGAAGCTGATGTG
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               962262 97 -  74750902 AAGAGTTGACATGGTTCTCTGGGAGAGGGTGCTGCTTTGAGCGTCTCTAGTGGTCTCCGTGCTCGGAGACTGGTGTTTCTGAGAAAAAGCTGAGGTG
i calJac3.chr17            C 0 C 0
s mm10.chr16                65457324 94 -  98207768 AGGAGTTGATGTGGTCACCTCGGTGGTTGTGGTGGTTTGAGGTTTGC---TGGTCTCCATGCTTGTAGTATGATGGCTCTGAGAAACTGTTGTTATG
i mm10.chr16               C 0 T 4747
s canFam3.chr33             29089539 97 +  31377067 GGGAGAGGATGTGATCATCGCTGAGACACTGCTGGTTGCAGACTCTGTGCTGGTCTCCATGGTCTGGGTCGTGTGACCCTGAGATGACACTGTTGTC
i canFam3.chr33            C 0 C 0
e macFas5.chr2                 98696 5347 + 192460366 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C
e panTro4.chr3             199795713 3000 + 202329955 M

a score=18106.000000
s hg38.chr3_KI270935v1_alt    161222 20 +    197351 TCCTGATTAGAGGTCCTTGA
s rheMac3.chrUn_JH291127       61489 20 +    111706 TCCTGGATAGAAGTCCTTGA
i rheMac3.chrUn_JH291127   C 0 I 10256
s papAnu2.chr2                 92081 20 - 187378091 TCCTGATTAGAGGTCCTTGA
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               443257 20 -  91754291 TCTTGCGTAGAGGTCCTCGA
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               962359 20 -  74750902 TCCTGAGTAGAGGTCCTTAA
i calJac3.chr17            C 0 C 0
s mm10.chr16                65452671 20 -  98207768 ATTTGAATTGAGGTGATGGG
i mm10.chr16               T 4747 C 0
s canFam3.chr33             29089636 20 +  31377067 TCCGGAGTAGAAGTCAGGGT
i canFam3.chr33            C 0 C 0
e macFas5.chr2                 98696 5347 + 192460366 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C
e panTro4.chr3             199795713 3000 + 202329955 M

a score=24707.000000
s hg38.chr3_KI270935v1_alt    161242 52 +    197351 AGAAGCTGCAGTTGAT-TGTCCCTCTAGTGTCGCTGTTGTTGAGCCTGTTGAG
s papAnu2.chr2                 92101 52 - 187378091 AGAAGTGGCAGTTGAT-TGTCCCTCGAGTGTCACTGCTGCTGAGCCTGCTGAG
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               443277 52 -  91754291 GGAAGTTGTTTGTGAT-TGTCCTTCCAGTTCAGCTGTTATTGAGACTGCTGAG
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               962379 52 -  74750902 GGAAGTTGCTGGTGAT-TGTCCTTCTGGCCCAGCTGTTATTGAGACTGCTGAG
i calJac3.chr17            C 0 I 378
s mm10.chr16                65452691 46 -  98207768 TGCTGACACTGTTGACATGTTCTG-------GGATGAAGGTGAGACCTGTGTG
i mm10.chr16               C 0 C 0
s canFam3.chr33             29089656 52 +  31377067 GGAATGTGCTGTTGAG-TGTCCCTCTGGTCCACTTGTCATTGAGCCTGTTGAG
i canFam3.chr33            C 0 C 0
e rheMac3.chrUn_JH291127       61509 10256 +    111706 I
e macFas5.chr2                 98696 5347 + 192460366 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C
e panTro4.chr3             199795713 3000 + 202329955 M

a score=6027.000000
s hg38.chr3_KI270935v1_alt    161294 8 +    197351 GTGACTGG
s papAnu2.chr2                 92153 8 - 187378091 ATGACTGC
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               443329 8 -  91754291 GTCACTGG
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               962809 8 -  74750902 GTGACTGG
i calJac3.chr17            I 378 T 756
s mm10.chr16                65452737 8 -  98207768 GTGGCAGG
i mm10.chr16               C 0 I 1
s canFam3.chr33             29089708 8 +  31377067 CTGACTGG
i canFam3.chr33            C 0 C 0
e rheMac3.chrUn_JH291127       61509 10256 +    111706 I
e macFas5.chr2                 98696 5347 + 192460366 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891 0 + 123690457 C
e panTro4.chr3             199795713 3000 + 202329955 M

a score=-2145.000000
s hg38.chr3_KI270935v1_alt    161302 2 +    197351 -GG
s papAnu2.chr2                 92161 2 - 187378091 -GG
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               443337 2 -  91754291 -GG
i chlSab2.chr15            C 0 I 2617
s calJac3.chr17               962061 2 -  74750902 -AG
i calJac3.chr17            T 756 C 0
s mm10.chr16                65452746 1 -  98207768 -G-
i mm10.chr16               I 1 C 0
s canFam3.chr33             29089716 2 +  31377067 AG-
i canFam3.chr33            C 0 C 0
e rheMac3.chrUn_JH291127       61509 10256 +    111706 I
e macFas5.chr2                 98696 5347 + 192460366 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891 0 + 123690457 C
e panTro4.chr3             199795713 3000 + 202329955 M

a score=3631.000000
s hg38.chr3_KI270935v1_alt    161304 25 +    197351 CAGCAGTTTTACTTCCAGTTATTAA
s papAnu2.chr2                 92163 25 - 187378091 CAGGAGTTTTACTTCCAGTTGTTGA
i papAnu2.chr2             C 0 C 0
s calJac3.chr17               962063 25 -  74750902 TGGGACTTCTAGTTCTAGGGGTTGA
i calJac3.chr17            C 0 C 0
s mm10.chr16                65452747 25 -  98207768 TAGAACCTTGAGTTGTTATTGCTGT
i mm10.chr16               C 0 C 0
s canFam3.chr33             29089718 25 +  31377067 TAACACTTCCCGTGACACCTGGTGG
i canFam3.chr33            C 0 C 0
e rheMac3.chrUn_JH291127       61509 10256 +    111706 I
e chlSab2.chr15               443339 2617 -  91754291 I
e macFas5.chr2                 98696 5347 + 192460366 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C
e panTro4.chr3             199795713 3000 + 202329955 M

a score=13756.000000
s hg38.chr3_KI270935v1_alt    161329 25 +    197351 TGTGTCCTCTGTGGTTCCTGGAGTG
s papAnu2.chr2                 92188 25 - 187378091 TGTTTCCCCTGTGGTTCCCGGAGTG
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               445956 25 -  91754291 TGTTTCCCCTGTGGTTCCTGGAGTG
i chlSab2.chr15            I 2617 I 5969
s calJac3.chr17               962088 25 -  74750902 TGTCTCCTCAGTGATATTAGAAGTG
i calJac3.chr17            C 0 C 0
s mm10.chr16                65452772 25 -  98207768 TGTGTGTCTTGTGTCTACTGAGGTA
i mm10.chr16               C 0 C 0
s canFam3.chr33             29089743 25 +  31377067 CATGGACCCTGTGTTGACAGCAGTG
i canFam3.chr33            C 0 I 3246
e rheMac3.chrUn_JH291127       61509 10256 +    111706 I
e macFas5.chr2                 98696 5347 + 192460366 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891  0 + 123690457 C
e panTro4.chr3             199795713 3000 + 202329955 M

a score=67.000000
s hg38.chr3_KI270935v1_alt    161354 1 +    197351 A
s papAnu2.chr2                 92213 1 - 187378091 G
i papAnu2.chr2             C 0 C 0
s calJac3.chr17               962113 1 -  74750902 G
i calJac3.chr17            C 0 C 0
s mm10.chr16                65452797 1 -  98207768 A
i mm10.chr16               C 0 I 7514
e rheMac3.chrUn_JH291127       61509 10256 +    111706 I
e canFam3.chr33             29089768 3246 +  31377067 I
e chlSab2.chr15               445981 5969 -  91754291 I
e macFas5.chr2                 98696 5347 + 192460366 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891 0 + 123690457 C
e panTro4.chr3             199795713 3000 + 202329955 M

a score=273.000000
s hg38.chr3_KI270935v1_alt    161355 1 +    197351 a
s papAnu2.chr2                 92214 1 - 187378091 A
i papAnu2.chr2             C 0 I 7105
s calJac3.chr17               962114 1 -  74750902 A
i calJac3.chr17            C 0 C 0
e rheMac3.chrUn_JH291127       61509 10256 +    111706 I
e mm10.chr16                65452798 7514 -  98207768 I
e canFam3.chr33             29089768 3246 +  31377067 I
e chlSab2.chr15               445981 5969 -  91754291 I
e macFas5.chr2                 98696 5347 + 192460366 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891 0 + 123690457 C
e panTro4.chr3             199795713 3000 + 202329955 M

a score=100.000000
s hg38.chr3_KI270935v1_alt    161356 1 +    197351 c
s calJac3.chr17               962115 1 -  74750902 C
i calJac3.chr17            C 0 I 9856
e rheMac3.chrUn_JH291127       61509 10256 +    111706 I
e mm10.chr16                65452798 7514 -  98207768 I
e canFam3.chr33             29089768 3246 +  31377067 I
e chlSab2.chr15               445981 5969 -  91754291 I
e macFas5.chr2                 98696 5347 + 192460366 I
e papAnu2.chr2                 92215 7105 - 187378091 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891 0 + 123690457 C
e panTro4.chr3             199795713 3000 + 202329955 M

a score=0.000000
s hg38.chr3_KI270935v1_alt    161357 100 +    197351 caaaataggcaagcagagagctaaatcatgaatgaactcctattcacaattgctacaaatagaataaaatacctaggaatacagctaacaaaggatgtga
e rheMac3.chrUn_JH291127       61509 10256 +    111706 I
e mm10.chr16                65452798 7514 -  98207768 I
e canFam3.chr33             29089768 3246 +  31377067 I
e calJac3.chr17               962116 9856 -  74750902 I
e chlSab2.chr15               445981 5969 -  91754291 I
e macFas5.chr2                 98696 5347 + 192460366 I
e papAnu2.chr2                 92215 7105 - 187378091 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891   0 + 123690457 C
e panTro4.chr3             199795713 3000 + 202329955 M

a score=73062.000000
s hg38.chr3_KI270935v1_alt    161457 273 +    197351 aaactaccattcttcacagaatgagaacaaactactttaaaattcatatggaatcaaaaaagaacccaaatagccaagacaatcctaagcaaaaagaacaaagtgggaggctacctgacttcaaactatactacaaggctacagtaaccaaaacagcatggtactggtaccaaaactgacgtataaaccaatggaacagaatagataccttggaaataagaccacacatctacaaccatctgatctttgacaaacctgacaaaagcaggcaat
s papAnu2.chr2                 99320 272 - 187378091 aaactaccattcttcacagaatgagaacaaactactttaaaattcatatggaaccaaaaaagagcccgaataACCAAGACagtcctaggcaaaaagaacaaagtgggaggctacctgacttcaaactatactacaaggctacagtaaccaaaacagcatggtactggtaccaaaactgacatatagaccaatgg-acaGAATAGAGACCTtggaaataagaccacacatctacaaccatctgatctttgacaaacctgacaaaagcaagcaat
i papAnu2.chr2             I 7105 C 0
s chlSab2.chr15               451950 272 -  91754291 aaactaccattcttcaaagaatgagaacaaactactttaaaattcatatggaaccaaaaaagagcccgaataaccaagacaatcctaggcaaaaagaacaaagtgggaggctacctgacttcaaactatactacaaggctacagtaaccaaaacagcatggtactggtaccaaaactgacatatagaccaatgg-acagaatagagaccttggaaataagaccacacatctacaaccatctgatctttgacaaacctgacaaaagcaagcaat
i chlSab2.chr15            I 5969 C 0
e rheMac3.chrUn_JH291127       61509 10256 +    111706 I
e mm10.chr16                65452798 7514 -  98207768 I
e canFam3.chr33             29089768 3246 +  31377067 I
e calJac3.chr17               962116 9856 -  74750902 I
e macFas5.chr2                 98696 5347 + 192460366 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891   0 + 123690457 C
e panTro4.chr3             199795713 3000 + 202329955 M

a score=147682.000000
s hg38.chr3_KI270935v1_alt    161730 286 +    197351 ggggaaaggattctctattcaataaatggtgctgggaaaactggttagccatatgcagaaaactgaaactggaccccttccttacaccttatacaaaaattaactcaaggcaggttaaagacttacatgtaaaaccccaaaccatgaaaaccctagaagaaaacctaggcaataccattcaggacatagacataggcaaagattttatgatgaaatctccaaaagcacttgcaacaaaagctaaaattgacaaatgggatctaattaaactaaagagctctgcaca
s panTro4.chr3             199798804 286 + 202329955 ggggaaaggattctctattcaataaatggtgctgggaaaactggttagccatatgcagaaaactgaaactggaccccttcctcacaccttatacaaaaattaactcaaggcgggttaaagacttacatgtaaaaccccaaaccatgaaaaccctagaagaaaacctaggcaataccattcaggacatagacataggcaaagattttatgatgaaatctccaaaagcacttgcaacaaaagccaaaattgacaaatgggatctaattaaactaaagagctctgcaca
i panTro4.chr3             M 3000 C 0
s papAnu2.chr2                 99592 282 - 187378091 ggggaaaggattctct----aataaatggtgctgggaaaactggctagccatatgcagaaaactgaaactggaccccttccttacaccttatacaaaaattaactcaaggtggactaaagacttaaatgtaaagccccaaaccataaaaaccctagaagaaaacctaggcaataccattcaggacataggaatgggcaaagattttatgatgaaatctccaaaagcaattgcaataaaagataaaatagacaaatgggatctaattaaactaaagagctctgcaca
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               452222 282 -  91754291 ggggaaaggattctct----aataaatggtgctgggaaaactggctagccatatgcagaaaactgaaactggaccccttccttacaccttatacaaaaattaactcaaggtggactaaagacttaaatgtaaagctccaaaccataaaaaccctagaagaaaacctaggcaataccattcaggacataggaatgggcaaagattttatgatgaaatctccaaaagcaattgcaataaaagataaaatagacaaatgggatctaattaaactaaagagctctgcaca
i chlSab2.chr15            C 0 C 0
e rheMac3.chrUn_JH291127       61509 10256 +    111706 I
e mm10.chr16                65452798 7514 -  98207768 I
e canFam3.chr33             29089768 3246 +  31377067 I
e calJac3.chr17               962116 9856 -  74750902 I
e macFas5.chr2                 98696 5347 + 192460366 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120914891   0 + 123690457 C

a score=82024.000000
s hg38.chr3_KI270935v1_alt    162016 98 +    197351 gcaaaagaaactatcatcagagcaaacaggcaacctacaaaatgagaaaatttttgcaatctaaccatctgacagaggtctaatatccagaatttaca
s panTro4.chr3             199799090 98 + 202329955 gcaaaagaaactatcatcagcgcaaacaggcaacctacaaaatgagaaaatttttgcaatctaaccatctgacagaggtctaatatccagaatttaca
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120914891 98 + 123690457 gcaaaagaaattattatcagagcaaacaggcaacctgtgaaatgagaaaatttttgcaatctaaccatctgacagaggtctaatatcccgaatttaca
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr2                 99874 98 - 187378091 gcaaaagaaactatcatcagagcaaacaggaaacctacaaaatgagaaaatttttgcaatctacccatctgagagaggtctaatatccagaatttacc
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               452504 98 -  91754291 gcaaaagaaactatcatcagagcaaacaggcaacctacaaaatgagaaaatttttgcaatctacccatctgagagaggtctaatatacagaatttatc
i chlSab2.chr15            C 0 C 0
e rheMac3.chrUn_JH291127       61509 10256 +    111706 I
e mm10.chr16                65452798 7514 -  98207768 I
e canFam3.chr33             29089768 3246 +  31377067 I
e calJac3.chr17               962116 9856 -  74750902 I
e macFas5.chr2                 98696 5347 + 192460366 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=775392.000000
s hg38.chr3_KI270935v1_alt    162114 621 +    197351 aggaacttaaatttacaagaaaaaaataaacaaccccatcaaaaagcaggcaaaggatatgaacagacacttatcaaaagaagacatttatgccaccaacaaacatatgaaaaaaggctcatcatcatggatcattagagaaatgcaaatcaaaactacaaagggatatcatctcacaccagtcagaatggcaattattaaaaagtcaagaaacagcagatgctggcaaggctgtggtgaaataggaacgcttttacactgttggtgggagtgtaaatcagttcaaccattgtggaagacagtgtggcgattcctcaaggatctagaaccagaaataccatttgacccagcaatcccattactgggtatatgcccaaaggaatataaatcattctgttataaagatacatgcacacgtatgtttactgcagcactatttacaatagtaaagacatgaaaccaacccaaatgtccatcagtgatagactggataaagaaaatgtggtacatatgcagcacggaatactatgcagccat-gaaaaaggaatgggatcatgtcctttgcaggtacatggatgaagctgaaagccatcatcctcaacaaactaacaggggaacaga
s panTro4.chr3             199799188 621 + 202329955 aggaacttaaatttacaagaaaaaaataaacaaccccatcaaaaagcaggcaaaggatatgaacagacacttatcaaaagaagacatttatgccaccaacaaacatatgaaaaaaagctcatcatcatggatcattagagaaatgcaaatcaaaactacaatgggatatcatctcacaccagtcagaatggcaattattaaaaagtcaagaaacagcagatgctggcaaggctgtggtgaaataggaacacttttacactgttggtgggagtgtaaatcagttcaaccattgtggaagacagtgtggcgattcctcaaggatctagaaccagaaataccatttgacccagcaatcccattactgggtatatgcccaaaggaatataaatcattctgttataaagatacatgcacacgtatgtttactgcagcactattcacaatagtaaagacatgaaaccaacccaaatgtccatcagtgatagactggataaagaaaatgtggtacatatgcagcacggaatactatgcagccat-aaaaaaggaatgggatcacatcctttgcaggtacatggatgaagctggaagccatcatcctcaacaaactaacaggggaacaga
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120914989 619 + 123690457 aggaagttaaatttacgagaaaaaaataaacaaccccatcagaaagcgggcaaaggatatgaacagacacttatcaaaagaagacatttatgccaccaaccaac--atgcaaaaaagctcatcatcatggatcattagggaaatgcaaatcaaaaccacaatgggatatcatctcccgccagtcagaatggcaattattaaaaagtcaagaaacagcagatgctggcaaggctgtggtgaaataggaacggttttacactcttggtgggagtgtaaattagttcaaccattgtggaagacagtgtggtgattcctcaaggatctagaaccagaaataccatttgacccagcaatcccattactgggtatatgcccaaaggaatataaatcattctgttataaggatacatgtacatgtatctttactgcagcactattcacaatagtaaagacatgaaaccaacccaaatgtccatcagtgatagactggataaagaaaatgtggtacatatacagcacagaatactatgcagccat-aaaaaaggaatgggatcatgtcctttgcaggtacatggatgaagctgaaagccatcatcctcaacaaagtaacagaggaacaga
i nomLeu3.chr11            C 0 C 0
s macFas5.chr2                104043 614 + 192460366 aggaatttaaatttacaagacaaa---aaacaaacccatcaaaaagtgggcaaaggatatg-ataggcacttatcaaaagaagacatttatgccaccagcaaacatatgaaaaaaagcttataatcatggatcattagagaaatgcaaatcaaaaccacaatgggataccatctcacaccagtcagaatggcaattattaaaaagtcaagaaacagcagatgctggcaaggctgtggagaaatatgaacgcttttacactcttggtgggaatgtaaatcagttcaaccattgtggaagacagtgtggggattcctcaaggatctaaaaccagaaataccatttgactcagccatcccattactggctatatacccaaaggaatataaatc-ttccgttataaagatacatgcacatgtatgtttattgcagcactattcacaatagtaaagacatgaaaccaacccaaatgtccatcactgacagactggataaagaaaatgtggtacatatacagcatggaatactatgcagccataaaaaaaggaatgggatcatgtcctttgcagggacatggatgaagctggaaga---catcctcagcaaactaacacacgaacaga
i macFas5.chr2             I 5347 C 0
s papAnu2.chr2                 99972 617 - 187378091 aggaacttaaatttacaagacaaa---aaacaaacccatcaaaaagtgggcaaaggatatg-ataggcacttatcaaaagaagacatttatgccaccagcaaacatatgaaaaaaagcttataatcatggatcattagagaaatgcaaatcaaaaccacaatggaataccatctcatgccagtcagaatggcaattattaaaaagtcaagaaacagcagatgctggcaaggctgtggagaaatacgaaaacttttacactcttggtgggaatgtaaatcagttcaaccattgtggaagacagtgtggggattcctcaaggatctaaaaccagaaataccatttgactcagccatcccattactggttatatacccaaaggaatataaatc-ttccgttataaagatacatgcacatatatgtttattgcagcactattcacaatagtaaagacatgaaaccaacccaaatgtccatcactgacagactggataaagaaaatgtggtacatatacagcatggaatactatgcagccataaaaaaagcaatgggatcatgtcttttgcagggacatggatgaagctggaagacatcatcctcagcaaactaacacacgaacaga
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               452602 618 -  91754291 aggaacttaaatttacaagacaaa---aaacaaacccatcaaaaagtgggcaaagaatatg-ataggcacttatcaaaagaagacatttatgccgccagcaaacatatgaaaaaaagcttataatcatggatcattagagaaatgcaaatcaaaaccacaatgggataccatctcacgccagtcagaatggcaattattaaaaagtcaagaaacagcagatgctggcaaggctgtggagaaatacgaacacttttacactcttggtgggaatgtaaatcagttcaaccattgtggaagacagtgtggggattcctcaaggatctagaaccagaaataccatttgactcagccatcccattactgggtatatacccaaaggaatataaatcattccgttataaagatacatgcacatgtatgtttattgcagcattattcacaatagtaaagacatgaaaccaacccaaatgtccatcactgacagactggataaagaaaatgtggtacatatacagcatggaatactatgcagccataaaaaaaggaatgggatcatgtcttttgcagggacatggatgaagctggaagacatcatcctcagcaaactaacacacgaacaga
i chlSab2.chr15            C 0 C 0
e rheMac3.chrUn_JH291127       61509 10256 +    111706 I
e mm10.chr16                65452798 7514 -  98207768 I
e canFam3.chr33             29089768 3246 +  31377067 I
e calJac3.chr17               962116 9856 -  74750902 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=1064113.000000
s hg38.chr3_KI270935v1_alt    162735 640 +    197351 aaaccaaacactgcatgttttcactcataagttggagttgaacaatgagaacacatggacacagagaggggaacaacacacactggcgcctgtcagggacgggacaaggggaggaagagcgtcaggataaatagctaatacatgcaggtgatgggttgataggtgcagtaaaccaccatggcacatatatacctgtgtaacaaacctgcacgttctgcacatgtatcctgaaacttaaagt-aaaaaatgaaaagaaataaaAAG-AAAAAATGAAAAATTAATATATCACAACTGTACATATTTGGGGGATAAAAAAATAATAAGAGATGGggccgggcatggtagc-cccacctgcaatcccagcactttgggaggctgagatgggtgg-----------------atcacttgaggtcaggagtgcgagaccagcctgggcaatatggcaaaaccccgtctctactag--aaaaaaaaatacagaaatagctgggcgtggtggtgggtgcctgtaatcccagttactcaaaaggctgaggcaggagaattgcttgaacccaggaggtggaggttgcagtgagcagacatcatgccacttcactgcagcctgggcgacagagcaagattctgtctcaaaaaaaaaaaataaataaaataa
s panTro4.chr3             199799809 628 + 202329955 aaaccaaacactgcatgttttcactcataagttggagttgaacaatgagaacacttggacacagggaggggaacaacacacaccggcgcctgtcagggacgggacaaggggaggaaaagcgtcaggataaatagctaatacatgcaggtgatgggttgataggtgcagtaaaccaccatggcacatatatacctgtgtaacaaacctgcacgttctgcacatgtatcccgaaacttaaagt-aaaaaatgaaaagaaataaaAAG-AAAAAATGAAAAATTAATATATCACAATTGTGCATATTTTGGGGATAAAAAAATAATAAGAGATGGggccgggcatggtagc-cccacctgcaatcccagcactttgggaggccaagacgggtgg-----------------atcacttgaggtcaggagtgcgagaccagcctgggcaacatggcaaaaccccgtctctactag--aaaaaaaaatacagaaatagctgggcgtggtggtgggtgcctgtaatcccagttactcaaaaggctgaggcaggagatttgcttgaacccaggaggtggaggttgcagtgagcagacatcatgccactacactgcagcctgggcgacagagcaagattctgtctcaaaaaaaaaaaa------------
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120915608 640 + 123690457 aaaccaaacactgcatgttctcactcagaagttggagtggaacaatgagaacacatggacccagggaggggaacaacacacaccagcgcctgtcaggggcgggacaaggggaggaagagcgtcaggataaatagctaatgtatgcaggtgatgggttgataggtgcagtaaaccaccatggcacatatatacctgtgtaacaaacctgcacgttctgcacatgtatcccgaaacttaaagtaaaaaaatgaaaagaaaTAAAAAGAAAAAAATGAAAAATTAATATATCACAATTGTACATATTTGAGGGATAAAAAAATAATAAGAGATGGgaccaggcatggtagt-cccacctgcaatccgagcactttgggaggccgagatgagtgg-----------------atcacttgaggtcaggagtgcaagaccagcccaggcaacatggcaaaaccccatctctactagaaaaaaaaaaatacagaaatggctgggcatggtggtgggttcctgtaatcccagctactcaaaaggctgaggcaggagaattgcttgaacccaggaggtggaggttgcagtgagcagagatcatgccactgcactgcagcctgggcgacagagcaagattctgtctcaaaaaaaaaaaa----aaaaagag
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       71765 625 +    111706 aaaccacacactgcatgttctcactcataagtgggagttgaacaatgagaacacatggacacagggaggggaacagcacatacca-ggcctgtagggggcgggacaaggggaggaagagtgtcaggataaatagctaatgcatgcaagtgatgggttgataggtgtagcaaaccaccgtgacacacatatatctatgtaacaaacctgcatttgctgcacatgtatctcgaaacttaaagt-aaaa----aagtgaaataaaaag-aaaaaaTGAAAAATTAATATATTGCAATTGTACATATTTGGGGAAT-AAAAAATAATAAGAGATAGggctgggcatggtagctcccacctgcaatcccagcactttgggaggccgaggtgagtggnnnnnnnnnnnnnnnnn---------------------gagaccagcctgggcaacatgacaaaaccccgtctctaccag-aaaaaaaaaatacaaaaatggctgggcatggtggcgggtgcctgtaatcccagctactcaaaactctgaggcaggagaatcacttgaacccaggaggtggaggtcgcagtgagcagagatcacgccactgcactccagcctgggcgacagagcaagattctgtctcaaaaaaaaaaaa-------aagag
i rheMac3.chrUn_JH291127   I 10256 C 0
s macFas5.chr2                104657 629 + 192460366 aaaccacacactgcatgttctcactcataagtgggagttgaacaatgagaacacatggacacagggaggggaacagcacatacca-ggcctgtagggggcgggacaaggggaggaagagtgtcaggataaatagctaatgcatgcaagtgatgggttgataggtgtagcaaaccaccatgacacacatatacctatgtaacaaacctgcatttgctgcacatgtatctcgaaacttaaagt-aaaa----aagtgaaataaaaAG-AAAAAATGAAAAATTAATATATTGCAATTGTACATATTTGGGGAAT-AAAAAATAATAAGAGATAGggctgggcatggtagctcccacctgcaatcccagcactttgggaggccgaggcgagtgg-----------------atcacttgaggtcaggagtgtgagaccagcctgggcaacatgacaaaaccccgtctctaccag-aaaaaaaaaatacagaaatggctgggcatggtggcgggtgcctgtaatcccagctactcaaaactctgaggcaggagaatcacttgaacccaggaggtggaggtcgcagtgagcagagatcacgccactgcactccagcctgggcgacagagcaagattctgtctcaaaaaaaaaaaa-------aagag
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                100589 627 - 187378091 aaaccacacactgcatgttctcactcataagtgggagttgaacaatgagaacacatggacacagggaggggaacagcacataccagggcctgtagGGGGCGGGACAAGGGGAGGAAGAGtgtcaggataaatagctaatgcatgcaagtgatgggttgataggtgtagcaaaccaccatgacacacatatacctatgtaacaaacctgcatttgcTGCACATGTATCTcgaaacttaaagt-aaaa----aagtgaaataaaaag-aaaaaatgaaaaattaatatattgcaattgtacatatttggggaataaaaaaataataagagatagggctgggcatggtagctcccacctgcaatcccagcactttgggaggccgaggcgagtgg-----------------atcacttgaggtcaggagttcaagaccagcctgggcaacatgacaaaaccctgtctctaccag--agaaaaaaatacagaaatggctgggcatggtggcggatgcctgtaatcccagctactcaaaactctgaggcaggagaatcacttgaacccaggaggtggaggtcgcagtgagcagagatcacgccactgcactccagcctgggcgacagagcaagattctgtctcaaaaaaaaaaaa-------aa---
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               453220 629 -  91754291 aaaccacacactgcatgttctcactcataagtgggagttgaacaatgagaacacatggacacagggaggggaacagcacatcccagggcctgtagggggcgggacaaggggaggaagagtgtcaggataaatagctaatgcatgcaagtgatgggttgataggtgtagcaaaccaccatggcacacatatacctatgtaacaaacctgcatttgctgcacatgtatctcgaaacttaaagt-aaaa----aagtgaaataaaaAG-AAAAAATGAAAAATTAATATATTGCAATTGTACATATTTGGGGAATAAAAAAATAATAAGAGATAGggctgggcatggtagcttccacctgcaatcccagcactttgggaggccgaggcgagtgg-----------------atcacttgaggtcaggagtgcgagaccagcctgggcagcatgacaaaaccctgtctctaccag--aaaaaaaaatacagaaatggctgggcatgctggcgggtgcctgtaatcccagctactcaaaactctgaggcaggagaatcacttgaacccaggaggtggaggtcgcagtgagcagagatcacgccactgcactccagcctgggtgacagagcaagagtctgtctcaaaaaaaaaaaa-------aa-aa
i chlSab2.chr15            C 0 C 0
e mm10.chr16                65452798 7514 -  98207768 I
e canFam3.chr33             29089768 3246 +  31377067 I
e calJac3.chr17               962116 9856 -  74750902 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=9487.000000
s hg38.chr3_KI270935v1_alt    163375 9 +    197351 aaaaGGAGA--
s panTro4.chr3             199800437 6 + 202329955 ---aggaga--
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120916248 9 + 123690457 agagagaga--
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       72390 9 +    111706 agagagaga--
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                105286 9 + 192460366 agagagaga--
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                101216 9 - 187378091 aaagagaga--
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               453849 9 -  91754291 aaagagaga--
i chlSab2.chr15            C 0 C 0
s canFam3.chr33             29093014 9 +  31377067 --AACAAGACT
i canFam3.chr33            I 3246 C 0
e mm10.chr16                65452798 7514 -  98207768 I
e calJac3.chr17               962116 9856 -  74750902 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=150254.000000
s hg38.chr3_KI270935v1_alt    163384 64 +    197351 GAGAGATGGGGGTGCAGGATTCCCACAGAGGAAGGCCCCTGATAAGCACTGCTTCA-AATCGCCT
s panTro4.chr3             199800443 64 + 202329955 gagagaTGGGAGTGCAGTATTCCCACAGAGGAAGGCCCCTGATAAGCACTGCTTCA-AATCGCCT
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120916257 63 + 123690457 GAGAGATAGGGGTGCCGAATTCCCACAGAGGAAGGCCCCTGATAGGCACTGCTTC--AATCGTCT
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       72399 64 +    111706 gagaGATGGGGGTGCAGGATCCCCACGGAGGAAGGCCCCTGAGAAGCACTGCTTCA-AATCGCCT
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                105295 64 + 192460366 gagagaTGGGGGTGCAGGATCCCCACGGAGGAAGGCCCCTGAGAAGCACTGCTTCA-AATCGCCT
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                101225 64 - 187378091 gagagatgggggtgcAGGATCCCCACGGAGGAAGGCCCCTGAGAAGCACTGCTTCA-AATCGCCT
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               453858 64 -  91754291 gagaGATGGGGGTGCAGGATCCCCACAGAGGAAGGCACCTGAAAAGCACTGCTTCA-AATCGCCT
i chlSab2.chr15            C 0 C 0
s mm10.chr16                65460312 64 -  98207768 GAGAGGTGGCAGTGCAGGCTTCCCACAGA-GAAGCCAGCTGCTCAGGGTGGCTTCAGAACCACCT
i mm10.chr16               I 7514 I 1200
s canFam3.chr33             29093023 63 +  31377067 AAAGGGTGGAGGTGCAGGATTCCTACAGAGTAAGGCACCTGATCAGGACTGCTGCA-AATTGTT-
i canFam3.chr33            C 0 C 0
e calJac3.chr17               962116 9856 -  74750902 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=54862.000000
s hg38.chr3_KI270935v1_alt    163448 28 +    197351 AGAAAAAGCACAGTTGCAGGAATATAGC
s panTro4.chr3             199800507 28 + 202329955 AGAAAAAGCACAGTTGCAGGAATATAGC
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120916320 28 + 123690457 AGAAAAAGCACAGTCGCAGGAATATAGC
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       72463 28 +    111706 AGAAAAAGCACAGTCCCAGGAGTACAGC
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                105359 28 + 192460366 AGAAAAAGCACAGTCCCAGGAGTACAGC
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                101289 28 - 187378091 AGAAAAAGCACAGTCCCAGGAGTACAGC
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               453922 28 -  91754291 AGAAAAAGCACAGTCCCAGGAGTATAGC
i chlSab2.chr15            C 0 C 0
s canFam3.chr33             29093086 28 +  31377067 ACAAAAGAAAAGATTTCAGAAATATAAC
i canFam3.chr33            C 0 I 288
e mm10.chr16                65460376 1200 -  98207768 I
e calJac3.chr17               962116 9856 -  74750902 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=44691.000000
s hg38.chr3_KI270935v1_alt    163476 25 +    197351 CAATGGTCTTCTCCAGCTCCCGCCT
s panTro4.chr3             199800535 25 + 202329955 CAATGGTCTTCTCCAGCTCCCACCT
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120916348 25 + 123690457 CAATGGTCTTCTCCAGCTCCCGCCT
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       72491 25 +    111706 CCATGGTCTTCTCCAGCTCCCGGCT
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                105387 25 + 192460366 CCATGGTCTTCTCCAGCTCCCGGCT
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                101317 25 - 187378091 CCATGGTCTTCTCCAGCTCCCGGCT
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               453950 25 -  91754291 CAATGGTCTTCTCCAGCTCCCGGCT
i chlSab2.chr15            C 0 C 0
e mm10.chr16                65460376 1200 -  98207768 I
e canFam3.chr33             29093114 288 +  31377067 I
e calJac3.chr17               962116 9856 -  74750902 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=382956.000000
s hg38.chr3_KI270935v1_alt    163501 215 +    197351 GTCTTCCTTGTGAGGAGGAAGGTGAGGTTAGACTAGAATGGTGAATTAACTGTGTTAAACTCCATGGGAAGAGGCAAACAGTACCCCTGCTATAAGCCGGGTTAACTCTCTCAACTTGAATT-ATAGCATTATCTTTCTT-AAAAATA-----AATTAAATTTCTACTTTTCTTTTTCGTTGTTAACATCTGTGCCAATCT-AGTAAAAAACCCAAGGGGTAA
s panTro4.chr3             199800560 215 + 202329955 GTCTTCCTTGTGAGGAGGAAAGTGAGGTTAGACTAGAATGGTGAATTAACTGTGTTAAACTCCATGGGAAGAGGGAAACAGTACCCCTGCTATAAGCCGGGTTAACTCTCTCAACTTGAATT-ATAGCATTATCTTTCTT-AAAAATA-----AATTAAATTTCTACTTTTCTTTTTCGTTGTTAACATCTGTCCCAATCT-AGTAAAAAACCCAGGGGGTAA
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120916373 214 + 123690457 ATCTTCCTTGTGAGGGGGAAGGTGAGGTTAGACTAGAATGGTGAATGAACTGTGTTAAACTCCATGGGAAAAGGGAATCAGTACCTCTGCTATAAGCTGGGTTAACTCTCTCAACTTGAATT-ATAGCATTATCTTTCTT-AAAAATA-----AATTAAATTTCTACTTTTCTTTTTCGTTATTAACATTTGTCCCAATCT-AGTAAAAAACCCAA-GGGTAA
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       72516 211 +    111706 GTCTTCGTTGTGGGGAGGAAGGTAAGGTTAGACTAGAATGGTGAATGAACTGTTTTAAACTCCATGGGAAGACGGAAACGGTACC-CTGCTGTAAGCCGGGTTAACTCTCTCACCTTGAATT-ACAGCGTTATCTTTCTT-AAAAATA-----AATTAAATTTCTACTGTTCTGTTTCG---TTAACATTTATCCCAATCT-AATAAAAAACCCAAGCGGTAA
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                105412 211 + 192460366 GTCTTCGTTGTGGGGAGGAAGGTAAGGTTAGACTAGAATGGTGAATGAACTGTTTTAAACTCCATGGGAAGACGGAAACGGTACC-CTGCTGTAAGCCGGGTTAACTCTCTCACCTTGAATT-ACAGCGTTATCTTTCTT-AAAAATA-----AATTAAATTTCTACTGTTCTGTTTCG---TTAACATTTATCCCAATCT-AATAAAAAACCCAAGCGGTAA
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                101342 214 - 187378091 GTCTTCGTTGTGGGGAGGAAGGTAAGGTTAGACTAGAATGGTGAATGAACTGTTTTAAACTCCATGGGAAGACGGCAACGGTACC-CTGCTGTAAGCCGGGTTAACTCTCTCACCTTGAATTAACAGcgttatcttttttaaaaaata-----aattaaatttctacTGTTCTGTTTCG---TTAACATTTATCCCAATCTAAATAAAAAACCCAAGCGGTAA
i papAnu2.chr2             C 0 M 50
s chlSab2.chr15               453975 211 -  91754291 GTCTTCCTTGTGGGGAGGAAGGTAAGGTTGGACTAGAATGGTGAATGAACTGTTTTAAACTCCATGGCAAGACGGAAACAGTACC-CTGCTGTAAGCCGGGTTAATTCTCTTACCTTGAATT-ACAGCATTATCTTTCTT-AAAAATA-----AATTAAATTTCTACTGTTCTGTTTCG---TTAACATTTATCCCAATCT-AATAAAAAACCCAAGCGGTAA
i chlSab2.chr15            C 0 C 0
s canFam3.chr33             29093402 181 +  31377067 GTTTTCCTTATGAAGAGGAGGACAAGGTTAGACTAGAATGGTTACCAGACTGTTTTAAACCCCTC----AGTGGGAGACAAT------------------GTTAGCTCTTGCA----GAACT-AGAACatt-------tt-aaaaataataataattaaatGTCTACTTCCCCCCCTCATCTTAAACATTTGT-----TCT-AGC-AGAAACCTAAGGAGTAA
i canFam3.chr33            I 288 C 0
e mm10.chr16                65460376 1200 -  98207768 I
e calJac3.chr17               962116 9856 -  74750902 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=93599.000000
s hg38.chr3_KI270935v1_alt    163716 67 +    197351 ATGCATATACTCTTGCCCTGGTCACAGACTACCAAGAAGCTAATATTATTGACCATAACCACTTTTT
s panTro4.chr3             199800775 67 + 202329955 ATGCATATACTCTTGCCCTGGTCACAGACTACCATGAAGCTAATATTATTGACCATAACCACTTTTT
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120916587 67 + 123690457 ATGCATATACTCTTGCCCTGGTCACAGACTACCATGAAGCTAATATTATTGATCATAACCACTTTAA
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       72727 67 +    111706 ATGCATATACTCTCGTCCTGGTCACAGACTACCATGAAGCTAATATCATCGGTCATAACTACTTTTT
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                105623 67 + 192460366 ATGCATATACTCTCGTCCTGGTCACAGACTACCATGAAGCTAATATCATTGGTCATAACTACTTTTT
i macFas5.chr2             C 0 C 0
s chlSab2.chr15               454186 67 -  91754291 ATGCATATACTCTTGTCCTGGTCACAGACTACCATGAGGCTAATATCATTGGTCATAACTACTTTTT
i chlSab2.chr15            C 0 C 0
s canFam3.chr33             29093583 64 +  31377067 GTGTACATATTCTATCTCTCATCATGTCATACAAT---GTTAATTTAATTGATCATGTCTATTTTTT
i canFam3.chr33            C 0 I 8
e mm10.chr16                65460376 1200 -  98207768 I
e calJac3.chr17               962116 9856 -  74750902 I
e papAnu2.chr2                101556 50 - 187378091 M
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=100392.000000
s hg38.chr3_KI270935v1_alt    163783 81 +    197351 AAAAAAAAATTATTTCCCAGGCAGAggccaggcatggtggctcatgtctgtaatcccagcattttgggaggccaaggtggg
s panTro4.chr3             199800842 80 + 202329955 TAAAAAAAATTATTTCCCAGGCAGAggccaggcatggtggctcatgtctgtaatcccagcattttgggaggcc-aggtggg
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120916654 81 + 123690457 AAAAGAAAATTATTTCCCAGGCAGAggccaggcatggtggctcatgtctgtaatcccagcattttgggaggccaaggtggg
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       72794 81 +    111706 TTTAAAACATTATTTCCCAGGCAGAggccaggcatggtagctcatgtctgtaatcccagcactttgggagtccaaggtggg
i rheMac3.chrUn_JH291127   C 0 I 599
s macFas5.chr2                105690 81 + 192460366 TTTAAAACATTATTTCCCAGGCAGAggccaggcatggtggctcatgtctgtaatcccagcactttgggagtccaaggtggg
i macFas5.chr2             C 0 C 0
s chlSab2.chr15               454253 81 -  91754291 TAAAAAACATTATTTCCCAGGCAGAggccaggaatggtggctcatgtctgtaattccagcactttgggagtccaaggtggg
i chlSab2.chr15            C 0 C 0
e mm10.chr16                65460376 1200 -  98207768 I
e canFam3.chr33             29093647  8 +  31377067 I
e calJac3.chr17               962116 9856 -  74750902 I
e papAnu2.chr2                101556 50 - 187378091 M
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=12159.000000
s hg38.chr3_KI270935v1_alt    163864 14 +    197351 aggatcactcgagg
s panTro4.chr3             199800922 14 + 202329955 aggatcacttgagg
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120916735 14 + 123690457 aggatcacttgagg
i nomLeu3.chr11            C 0 C 0
s macFas5.chr2                105771 14 + 192460366 aggaccacttgagg
i macFas5.chr2             C 0 C 0
s chlSab2.chr15               454334 14 -  91754291 aggaccacttgagg
i chlSab2.chr15            C 0 C 0
e rheMac3.chrUn_JH291127       72875 599 +    111706 I
e mm10.chr16                65460376 1200 -  98207768 I
e canFam3.chr33             29093647  8 +  31377067 I
e calJac3.chr17               962116 9856 -  74750902 I
e papAnu2.chr2                101556 50 - 187378091 M
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=101352.000000
s hg38.chr3_KI270935v1_alt    163878 115 +    197351 ccaggagtttgagaccagcctgggcaagatagcgagaccctgtgtcttaaaaaataaaaataataataataataataataataataataataGATATTAAATAAATAAAGAAAAA
s panTro4.chr3             199800936  96 + 202329955 ccaggagtttgagaccagcctgggcaacatagcgagaccctgtgtcttaaaaaataaa---------------aataataataataaaaatagatat----taaataaagaaaaa
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120916749  95 + 123690457 ccaggagtttgagaccagcctgggcaacatagcgagaccctgtgtcttaaaaaataaa---------------aata-----aAAAAAAATAAATATTAAATAAATAAAGAAAAA
i nomLeu3.chr11            C 0 C 0
s macFas5.chr2                105785  98 + 192460366 ccaggagtttgagaccagcctgggcaacatagcgagaccctgtgtctTAAAtagtaat---------------agtaataataataataat--atattaaataaagaaagaaaaa
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                101606  95 - 187378091 ccaggagtttgagaccagcctgggcaacatagcgagaccctgtgtcttaaatagtaa------------------taataataataataat--atactaaataaagaaagaaaaa
i papAnu2.chr2             M 50 C 0
s chlSab2.chr15               454348  95 -  91754291 ccaggagtttgagaccagcctgggcaacatagcgagaccctgtgtcttaaatagtaa------------------taataaTAATAATAAT--ATACTAAATAAAGAAAGAAAAA
i chlSab2.chr15            C 0 C 0
e rheMac3.chrUn_JH291127       72875 599 +    111706 I
e mm10.chr16                65460376 1200 -  98207768 I
e canFam3.chr33             29093647   8 +  31377067 I
e calJac3.chr17               962116 9856 -  74750902 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=306529.000000
s hg38.chr3_KI270935v1_alt    163993 221 +    197351 TATTTCCCAGGCAGAATGTTTAAATATTGGC-TTTTTTTGTTTAAAATATTT-CACAGCACCTG--CACTAGCCACATAC----------------------------CATCTTCGTGAATATTACCTT---AGCCTCTGAGTCTCTGAA--CCAAGAAGAAACCAAGAAAACTTGCC--------------------------------TTTTTTTTTCTCTTAGAAACTGACTCTTTTGGGTTTTCATTAGTTCCCTAGCTGTTCTCAAACTTCTTTC-TTTTTTCTTT-------
s panTro4.chr3             199801032 223 + 202329955 tatttCCCAGGCAGAATGTTTAAATATTGGCTTTTTTTTGTTTAAAATATTT-CACAGCACCTA--CACTAGCCACATAC----------------------------CATCTTCTTGAATATTACCTT---AGTCTCTGAGTCTCTGAA--CCAAGAAGAAACCAAGAAAACTTGCC--------------------------------TTCTTTTTTCTCTTAGAAACTGACTCTTTTGGGTTTTCATTAGTTCCCTAGCTGTTCTCAAACTTCTTTCTTTTTTTCTTT-------
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120916844 223 + 123690457 TATTTCCCAGGCAGAATGTTTAAATATTGGC-TTTTTTTGTTTACAATATTT-CATAGCACCTA--CACTAGCCACATAC----------------------------CATCTTCTTGAATATTACCTT---AGTCTCTGAGTCTCTGAA--CTAAGAAGAAACCAAGAAAACTTGCC------------------------------TTTTCTTTTTTCTTTTAGAAACTGACTCTTTTGGGTTTTCATTAGTTCCCTAGCTGTTCTCAAACTTCTTTC-TTTTTCCTTT-------
i nomLeu3.chr11            C 0 C 0
s macFas5.chr2                105883 211 + 192460366 taTTTCCCAGGCAGAATGTTTAAATATTGGA-TTTTTTTGTTTAAAATATTT-CATAGCACCTA--CACTAGCCACATAC----------------------------CATCTTCCTGAATATTACCTT---AGTCTCTGAGTCTCTGAA--CCAAGAAGAAACCAAGAAAACTTGCT-----------------------------------TTTTTTTTCTTAGAAACTTACTCTTTTGGGTTTTCATTAGTTCCCTAGCTGTTCTCAAAC--------TTTTTTCTTT-------
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                101701 211 - 187378091 tatttcccagGCAGAATGTTTAAatattgga-tttttttgtttaaaatattt-catagcaCCTA--CACTAGCCACATAC----------------------------CATCTTCCTGAATATTACCTT---AGTCTCTGAGtctctgaa--ccaggaagaaaccaagaaaacttgct-----------------------------------tttttttccttagaaactTACTCTTTTGGGTTTTCATTAGttcccaagctgttctcaaac--------ttttttcttt-------
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               454443 211 -  91754291 TATTTCCCAGGCAGAATGTTTAAATATTGGA-TTTTTTTGTTTAAAATATTT-CATAGCACCTA--CACTAGCCACATAC----------------------------CATCTTCTTGAATATTACCTT---AGTCTCTGAGTCTCTGAA--CCAAGAAGAAACCAAGAAAACCTGCT-----------------------------------TTTTTTTTCTTAGAAACTTACTCTTTTGGGTTTTCATTAGTTCCCTAGCTGTTCTCAAAC--------TTTTTTCTTT-------
i chlSab2.chr15            C 0 C 0
s canFam3.chr33             29093655 289 +  31377067 TATCTGGTAGGCAGGATATTTAAGTATCAAA-TTGTTCGGTTTAAAATATTTGTACTCCCACTAGTCACTAGTCACAGACAAAGCCTCAGTCAACCAGTAGACCCGATCATCCCCCTGAATTTTACCTTTAGGGACTTTGAGTCTTTTAAATCAAAGAAGAAACCCCAAAACATTGAGTCTTTTTGTGTGTGTGTTTttttgttttgttttgttttgttttTTTAGGAACTTACTCTTTTTGGTTTTCATTAGCTCCCTAGCTGTATTCAAAC--------ATTTTTTTTTTAACCTC
i canFam3.chr33            I 8 I 444
e rheMac3.chrUn_JH291127       72875 599 +    111706 I
e mm10.chr16                65460376 1200 -  98207768 I
e calJac3.chr17               962116 9856 -  74750902 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=23437.000000
s hg38.chr3_KI270935v1_alt    164214 27 +    197351 TTAAACATATATATATATaga-------gagaga
s panTro4.chr3             199801255 27 + 202329955 TTAAACATATATATATagaga-------gagaga
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120917067 27 + 123690457 TTAAACatatatatatatata-------tatata
i nomLeu3.chr11            C 0 C 0
s macFas5.chr2                106094 34 + 192460366 TTAAACatatatagatagatagatattttatata
i macFas5.chr2             C 0 I 105
s papAnu2.chr2                101912 27 - 187378091 ttaaacatatatagatagaca-------tatata
i papAnu2.chr2             C 0 I 31
s chlSab2.chr15               454654 27 -  91754291 TTAAACatatatagatagata-------tagata
i chlSab2.chr15            C 0 C 0
e rheMac3.chrUn_JH291127       72875 599 +    111706 I
e mm10.chr16                65460376 1200 -  98207768 I
e canFam3.chr33             29093944 444 +  31377067 I
e calJac3.chr17               962116 9856 -  74750902 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=1054.000000
s hg38.chr3_KI270935v1_alt    164241 2 +    197351 ga
s panTro4.chr3             199801282 2 + 202329955 ga
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120917094 2 + 123690457 ta
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr2                101970 2 - 187378091 ga
i papAnu2.chr2             I 31 C 0
s chlSab2.chr15               454681 2 -  91754291 ga
i chlSab2.chr15            C 0 I 39
e rheMac3.chrUn_JH291127       72875 599 +    111706 I
e mm10.chr16                65460376 1200 -  98207768 I
e canFam3.chr33             29093944 444 +  31377067 I
e calJac3.chr17               962116 9856 -  74750902 I
e macFas5.chr2                106128 105 + 192460366 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=-2900.000000
s hg38.chr3_KI270935v1_alt    164243  8 +    197351 -----------------------gagaagaa-
s panTro4.chr3             199801284  8 + 202329955 -----------------------gagagaga-
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120917096  8 + 123690457 -----------------------tatatata-
i nomLeu3.chr11            C 0 I 9
s papAnu2.chr2                101972 32 - 187378091 tagatattttatatatatatatatatatatat
i papAnu2.chr2             C 0 C 0
e rheMac3.chrUn_JH291127       72875 599 +    111706 I
e mm10.chr16                65460376 1200 -  98207768 I
e canFam3.chr33             29093944 444 +  31377067 I
e calJac3.chr17               962116 9856 -  74750902 I
e chlSab2.chr15               454683 39 -  91754291 I
e macFas5.chr2                106128 105 + 192460366 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=2918.000000
s hg38.chr3_KI270935v1_alt    164251 7 +    197351 agagaga
s panTro4.chr3             199801292 7 + 202329955 agaaaga
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120917113 7 + 123690457 atataga
i nomLeu3.chr11            I 9 C 0
s papAnu2.chr2                102004 7 - 187378091 agagaga
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               454722 7 -  91754291 atatata
i chlSab2.chr15            I 39 C 0
e rheMac3.chrUn_JH291127       72875 599 +    111706 I
e mm10.chr16                65460376 1200 -  98207768 I
e canFam3.chr33             29093944 444 +  31377067 I
e calJac3.chr17               962116 9856 -  74750902 I
e macFas5.chr2                106128 105 + 192460366 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=16978.000000
s hg38.chr3_KI270935v1_alt    164258 13 +    197351 gagagagaaagaa
s panTro4.chr3             199801299 13 + 202329955 gagagagagagaa
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120917120 13 + 123690457 gagagagagagag
i nomLeu3.chr11            C 0 C 0
s macFas5.chr2                106233 13 + 192460366 gagagagagagag
i macFas5.chr2             I 105 C 0
s papAnu2.chr2                102011 13 - 187378091 gagagagagagag
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               454729 13 -  91754291 gagagagagagag
i chlSab2.chr15            C 0 C 0
e rheMac3.chrUn_JH291127       72875 599 +    111706 I
e mm10.chr16                65460376 1200 -  98207768 I
e canFam3.chr33             29093944 444 +  31377067 I
e calJac3.chr17               962116 9856 -  74750902 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=462993.000000
s hg38.chr3_KI270935v1_alt    164271 262 +    197351 agagagagagagaaagagagacagggtcttctgtcacccaggctgaagttcagcggtg-taatTGgccttctgagtagctgggactacaggcacacacaaccatgcctgggtaatttttttatttctgtagaggtggaatcttgctatgttgcctaggctgctgtcgaactcccggcctcaagcgatcctcctgcttcagactctcaaagtactgggattaaaggtgtgagccaccgctcccACCC-TTTTTTTCAACCTCAGT
s panTro4.chr3             199801312 262 + 202329955 agagagagagagaaagagagacagggtcttctgtcacccaggctgaagttcagcggtg-taattggccttctgagtagctgggactacaggcacacacaaccatgcctgggtaatttttttatttttgtagaggtggaatcttgctatgttgcctaggctggtgtcgaactcccggcctcaagcgatcctcctgcttcagactctcaaagtactgggattaaaggtgtgagccaccgctcccACCC-TTTTTTTCTACCTCAGT
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120917133 262 + 123690457 agagagagagagagagagagagagGGTCTTCTGCCACCCAGGCTGAAGTCCAGCGGTG-TAATTGgccttctgagtagctgggactacaggcacacacaatcatgcctgggtaatttttttatttttgtaaaggtggaatcttgctatgttgcctaggctggtgtcgaactcctggcctcaagcgatcctcctgcttcagcctctcaaagtaccgggattaaatgtgtgagccaccgctcccACCC-TTTTTTTTAACCTCAGT
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       73474 263 +    111706 aGAGAGAGAGAGAGAGGGAAACAAGGTCTTCTGTCCCCCAGGCTGAAGTTCAGCCGTG-TAATTGgccttctgagtagctgggactacaggcacacacaaccacgcctgggtcatttttttatttttgtagaggtggaatcttgctatgttgcctaggctggtgtggaactcccggcttcaagtgatcctccggcttcagcctctcaaagcactgggattaaaggtgtgaaccaccgctcccACCCTTTTTTTTAAATCTCAGT
i rheMac3.chrUn_JH291127   I 599 C 0
s macFas5.chr2                106246 263 + 192460366 agagagagagagagagGGAAACAGGGTCTTCTGTCCCCCAGGCTGAAGTTCAGCCGTG-TAATTGgccttctgagtagctgggactacaggcacacacaaccatgcctgggtcatttttttatttttgtagaggtggaatcttgctatgttgccaaggctggtgtggaactcccggcttcaagtgatcctccggcttcagcctctcaaagcactgggattaaaggtgtgaaccaccgctcccACCCTTTTTTTTAAACCTCAGT
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                102024 261 - 187378091 agagagagagagagagagagacagagtcttctgtcccccaggctgaagttcagcgGTG-TAATTGGCCttctgagtggctgagactacaggcacacacaaccatgcctgggtcacttttttatttttgtagaggtggaatcttgctatgttgcctaggctggtgtggaactcccggcctcaagtgatcctcctgcttcagcctctcaaagcactggaa-tataggtgtgaaccaccgctccCACCC-tttttttAAACCTCAGT
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               454742 264 -  91754291 agagagagagagagagagagagagTGTCTTCTGTCCCCCAGGCTGAAGTTCAGCGGTGTTAACTGgccttctgagtagctgggactacaggcacacacaaccatgcctgggtcattttttaatttttgtagaggtggaatcttgctatgttgcctaggctggtgtggaactcccggcctcaagtgatcctcctgcttcagcctctcaaagcactgggattaaaggtgtgaaccactgctcccACCCTTTTTGTTAAACCTCAGT
i chlSab2.chr15            C 0 C 0
e mm10.chr16                65460376 1200 -  98207768 I
e canFam3.chr33             29093944 444 +  31377067 I
e calJac3.chr17               962116 9856 -  74750902 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=183737.000000
s hg38.chr3_KI270935v1_alt    164533 93 +    197351 GCTCCTAGATAGTTGGCA-------AGATGATACT--CAGAGAGACAAAGTCTCAGGGAAGAATTCAGCTTCAAGTCCACTTTCTGGAATTGActgtaattc-
s panTro4.chr3             199801574 93 + 202329955 GCTCCTAGATAGTTGGCA-------AGATGATATT--CAGAGAGACAAAGCCTCAGGGAAGAATTTAGCTTCAAGTCCACTTTCTGGAATTGActgtaattc-
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120917395 92 + 123690457 GCTCCTAGATAGTTGGCA-------AGATGATATT--CAGAGAGACAAAGTCTCAGGGAAGAATTTAGGTTCAAGTACACTTTCTGGAATTGACTA-ATTCC-
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       73737 93 +    111706 GCTCCCAGATAGTTGGCA-------Agatgatatt--cagagagataaagtctcagggaagaatttaggctcaagtacactttctggaattgactgtaattc-
i rheMac3.chrUn_JH291127   C 0 I 342
s macFas5.chr2                106509 93 + 192460366 GCTCCCAGATAGTTGGCA-------Agatgatatt--cagagagataaagtctcagggaagaatttaggctcaagtacactttctggaattgactgtaattc-
i macFas5.chr2             C 0 I 1
s papAnu2.chr2                102285 93 - 187378091 GCTCCTGGATAGTTGGCA-------AGATGATATT--CAGAGAGATAAAGCCTCAGGGAAGAATTTAGGCTCAAGTACACTTTCCGGAATTGACTGTAATTT-
i papAnu2.chr2             C 0 I 2
s chlSab2.chr15               455006 93 -  91754291 GCTCCCAGATAGTTGGCA-------Agatgatatt--cagagagataaagtctcagggaagaatttaggctcaagtacactttctggaattgactgtaattc-
i chlSab2.chr15            C 0 I 1
s canFam3.chr33             29094388 99 +  31377067 gctcccaggagggtcacaaaccaacagataaagttcacagaaagacaaactcccagagaaga----aagtttgagtgcagttcctggagttgactataattcc
i canFam3.chr33            I 444 C 0
e mm10.chr16                65460376 1200 -  98207768 I
e calJac3.chr17               962116 9856 -  74750902 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=7425.000000
s hg38.chr3_KI270935v1_alt    164626 4 +    197351 gcca
s panTro4.chr3             199801667 4 + 202329955 gcca
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120917487 4 + 123690457 GCCA
i nomLeu3.chr11            C 0 C 0
s macFas5.chr2                106603 4 + 192460366 gcca
i macFas5.chr2             I 1 C 0
s papAnu2.chr2                102380 4 - 187378091 GCCA
i papAnu2.chr2             I 2 C 0
s chlSab2.chr15               455100 4 -  91754291 gcca
i chlSab2.chr15            I 1 C 0
s canFam3.chr33             29094487 4 +  31377067 acca
i canFam3.chr33            C 0 C 0
e rheMac3.chrUn_JH291127       73830 342 +    111706 I
e mm10.chr16                65460376 1200 -  98207768 I
e calJac3.chr17               962116 9856 -  74750902 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=24863.000000
s hg38.chr3_KI270935v1_alt    164630 12 +    197351 ccttctcttctt
s panTro4.chr3             199801671 12 + 202329955 ccttctcttctt
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120917491 12 + 123690457 CTTTCTCTTCTT
i nomLeu3.chr11            C 0 C 0
s macFas5.chr2                106607 12 + 192460366 ctttctcatctt
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                102384 12 - 187378091 CTTTCTCATCTT
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               455104 12 -  91754291 ctttctcatctt
i chlSab2.chr15            C 0 C 0
s mm10.chr16                65461576 12 -  98207768 CCTTCCCTTCCT
i mm10.chr16               I 1200 C 0
s canFam3.chr33             29094491 12 +  31377067 ctttctcttctt
i canFam3.chr33            C 0 I 216
e rheMac3.chrUn_JH291127       73830 342 +    111706 I
e calJac3.chr17               962116 9856 -  74750902 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=20765.000000
s hg38.chr3_KI270935v1_alt    164642 12 +    197351 cagacagtaact
s panTro4.chr3             199801683 12 + 202329955 cagacagtaatt
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120917503 12 + 123690457 AAGACAGCAATT
i nomLeu3.chr11            C 0 C 0
s macFas5.chr2                106619 12 + 192460366 aagagagcaatt
i macFas5.chr2             C 0 I 311
s papAnu2.chr2                102396 12 - 187378091 AAGAGAGCAATT
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               455116 12 -  91754291 aagagagcaatt
i chlSab2.chr15            C 0 C 0
s mm10.chr16                65461588 12 -  98207768 GAGAGAGCCATT
i mm10.chr16               C 0 C 0
s canFam3.chr33             29094719 12 +  31377067 aagaaagcaatt
i canFam3.chr33            I 216 C 0
e rheMac3.chrUn_JH291127       73830 342 +    111706 I
e calJac3.chr17               962116 9856 -  74750902 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=385047.000000
s hg38.chr3_KI270935v1_alt    164654 160 +    197351 tagactctcaagtgagtgataatggttatggaccagctctaattgttaaaa----aagtgactcacgtgcaagcttctgcacttcattaatagtaactgcttactggtgacacacttGTAAACCGACGTGGACAAAGGCACGGGCTGAACCGCAGAGCCCTCTG-
s panTro4.chr3             199801695 160 + 202329955 tagactctcaagtgagtgataatggttatgaaccagctctaacagttaaaa----aagtgactcacgtgcaagcttctgcacttcattaatagtaactgcttactggtgacacacttGTAAACCGACGTGGACAAAGGCACGGGCTGAACCACAGAGCCCTCTG-
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120917515 160 + 123690457 TAGACTCTCAAGTGAATGATAATGGTTAtgaaccagctctaattgttaaaa----aagtgactcacttgcaagcttctgcacttcattaatagtaactgcttactagtgacacacttgtaaactgaCGTGGACAAAGGCACGGACTGAACTGCAGAGCCCTCTG-
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       74172 160 +    111706 tagactctcaagtgagtgagaatggttatgaatcagctctaattgttaaaa----aagcgactcactcgcaagcttctgcacttcattaatagtaactgcttgctggtgacacacttcTAAACCCACGTGGACAAAGCCACGGACTGAACTGCAGAGCCCGCTG-
i rheMac3.chrUn_JH291127   I 342 C 0
s macFas5.chr2                106942 160 + 192460366 tagactctcaagtgagtgagaatggttatgaatcagctctaattgttaaaa----aagcgactcactcgcaagcttctgcacttcattaatagtaactgcttgctggtgacacacttcTAAACCCACGTGGACAAAGCCACGGACTGAACTGCAGAGCCCGCTG-
i macFas5.chr2             I 311 C 0
s papAnu2.chr2                102408 160 - 187378091 TAGACTCTCAAGTGAGTGAGAATGGTTATGAATCAGCTCTAATTGTTAAAA----AAGTGACTCACTCGCAAGCTTCTGTACTTCATTAATAGTAACTGCTTGCTGGTGACACGCTTCTAAACCCACGTGGACAAAGGCACGGACTGAACCGCAGAGCCCGCTG-
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               455128 160 -  91754291 tagactctcaagtgagtgagaatggttatgaatcagctctaattgttaaaa----aagcgactcactcgcaagcttctgcacttcaataatagtaactgcttgctggtgacacacttcTAAACCCACGTGGACAAAGGCACGGGCTGAACTGCAGAGCCCGCTG-
i chlSab2.chr15            C 0 C 0
s mm10.chr16                65461600 157 -  98207768 CAGACTTTCAAGTGAGAGA----AGTTGTGAATCGGCTCTAATTTACACAAGT-CGAGTGACTCACCCGCAAACCAGTGTACTTTATTAATAG-AACTGCTTCCTGG-GAGAACTGTCTAAACTTTTGTAGACAAAGGAGTGGGCGGAGCTGCAGAGTACCTTG-
i mm10.chr16               C 0 I 2469
s canFam3.chr33             29094731 165 +  31377067 tagactttcaggttagtgagagtgattatgagtcaactctaattttttaaaatataagtgactcatttgcaagctcctgtactttgttaatagtaattaatgacaggtgacacacttctaagctggtGTGAACAAATGCACAGGTTGAGCTCCAGAGCTGAGTTT
i canFam3.chr33            C 0 C 0
e calJac3.chr17               962116 9856 -  74750902 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=292657.000000
s hg38.chr3_KI270935v1_alt    164814 165 +    197351 GGAGGTCCCTGGGCCCCTGGCTTAATCCAAAATGACTCCACTTCAACTTTAAACGGAAACTTCCTTTAGTTGGAATTAGGTTGAGATTTGTTGATAGGACTCTAAACTCGATGCCTGCTTTCTCCTAGAGAAAATTTGCAAAACTT-GGTTTCTCCAAATAAGGTT
s panTro4.chr3             199801855  94 + 202329955 GGAGGTCCCTGGGCCCCTGGCTTAATCCAAAATGACTCCACTTCAA-----------------------------------------------------------------------CTTTCTCCTGGAGAAAATTTGCAAAACTT-GGTTTCTCCAAATAAGGTT
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120917675 166 + 123690457 GGAGGTCGCTGGGCCCCTGGCTTAATCCAAAATGACTCCACTTCAACTTTAAATGGAAACTTCCTTTAGTCGGAATTATGATGACATTTGTTGATAGGACTCTAAATTCGATGCCTGCTTTCTCCTAGAGAAAATTTGCAAAACTTGGGTTTCTCCGAGTAAGGTT
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       74332 165 +    111706 GGAGGTCCCTGGGCCCCTGGCTTAATCCGAAATGACTCTGCTTCAACTTTAAACAGAAACTTCCTTTAGTTGGAATTATGATGAGATTTGTTGATAGGACTCTAAACTCGACGCCTGCTTTCTCCTAGAGAAAATTTGCAAAACTT-GGTTTCTCCAAATAAGGTT
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                107102 165 + 192460366 GGAGGTCCCTGGGCCCCTGGCTTAATCCGAAATGACTCTGCTTCAACTTTAAACAGAAACTTCCTTTAGTTGGAATTATGATGAGATTTGTTGATAGGACtctaaactcgacgcctgctttctcctagagaaaatttgcaaaactt-ggtttctccaaataaggtt
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                102568 165 - 187378091 GGAGGTCCCTGGGCCCCTGGCTTAATCCGAAATGACTCTGCTTCAACTTTAAACAGAAACTTCCTTTAGTTGGAATTATGATGAGATTTGTTGATAGGACTCTAAACTCGACGCCTGCTTTCTCCTAGAGAAAATTTGCAAAACTT-GGTTTCTCCAAATaaggtt
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               455288 165 -  91754291 GGAGGTCCCTGGGCCCCTGGCTTAATCCGAAATGGCTCTGCTTCAACTTTAAACAGAAACTTCCTTTAGCTGGAATTATGATGAGATTTGTTGATAGGACTCTACactcaatgcctgctttctcctagagaaaatttgcaaaactt-ggtttctccaaataaggtt
i chlSab2.chr15            C 0 I 330
s canFam3.chr33             29094896 161 +  31377067 GGGGGTCCTTGGGTCCCTACTTAACACCCAAATAAGTCTACTTTAACCTTAAAAGGAGACTTCCTTTATTCAAAAT---AAGTAGATTTGCTTATAGGACTTCCAATTCTATGCTTGAACCCTCTTCAATAAAGTTC-CAAAATTT-GGTTTCTCCAGATAACGTT
i canFam3.chr33            C 0 C 0
e mm10.chr16                65461757 2469 -  98207768 I
e calJac3.chr17               962116 9856 -  74750902 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=389713.000000
s hg38.chr3_KI270935v1_alt    164979 185 +    197351 TAAATTTAAAAACATTCTCTATGCAGTTATTTTTAACCTTATTTCATTTCCCTGATAACATAATTAAGAGcatttgtctatcatcaggctttgagt----agacaggagctatctaggggccaaactttctgaat---gtgtaaattcttggcaattaacatcttttcagagcctgcatcacctctgctaaa
s panTro4.chr3             199801949 189 + 202329955 TAAATTTAAAAACATTCTCTATGCAGTTATTTTTAACCTTATTTCATTTCCCTGAGAACATAATTAAGAGcatttgtctatcatcaggctttgagtaaacagacaggagctatctaggggccaaactttctgaat---gtgtaaattcttggccattaacatcttttcagagcctgcatcgcctctgctaaa
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120917841 167 + 123690457 TAAATTTAAAAACATTCTCTATGCAGTTATTTTTAACCTTATTTCATTTCCCTGAGAACATAATTAAGAGcatttgtctatcatcaggctttgagtaaacagacaggagctatctaggggccaaactttctgaat---gtgtaaattcttggcaattaaca----------------------tctgctcaa
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       74497 189 +    111706 TAAATTTAAAAACATTCTCCACGCAGTTATTGTTAACCTTACTTCATTTTCCTGAGAACATAATTAAGAGcatttgtctatcatcaggctttgagtaaacagacaggagctatctaggtgccaaactttctgaac---gtgtaaattcttggcaattaacatcttttcagagcctgcatcaGCTCTTTTACA
i rheMac3.chrUn_JH291127   C 0 I 3
s macFas5.chr2                107267 189 + 192460366 taaatttaaaaacattctccacgcagttattgttaaccttacttcattttcctgagaacataattaagagcatttgtctatcatcaggctttgagtaaacagacaggagctatctaggtgccaaactttctgaac---gtgtaaattcttggcaattaacatcttttcagagcctgcatcaGCTCTTTTACA
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                102733 189 - 187378091 taaatttaaaaacattctccACGCAGTTATTGTTAACCTTACTTCATTTTCCTGAGAACATAATTAAGAGCATTTGTCTATCATCAGGCTTTGAGTAAACAGACAGGAGCTATCTAGGTGCCAAACTTTCTGAAC---GTGTAAATTCTTGGCAATTAACAACTTTTCAGAGCCTGCATCAGCTCTTTTACA
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               455783 189 -  91754291 taaatttaaaaatattctctacgcagttattgttaaccttacttcattttcctgagaacataattaagagcatttgtctatcatcaggctttgagtaaacagacaggagctatctaggtgctcaactttctgaac---gtgtaaattcttggcaattaacatcttttcagagcctgcatcaGCTCTTTTACA
i chlSab2.chr15            I 330 I 3
s canFam3.chr33             29095057 190 +  31377067 -TAGGTTAGAAACATTCCCTACACAATTATCATTAACCTTATTTCATTTTCCTGAGAACATAAATAAAAGCATTC-TCTATTATCAGACTTTGAGATACCAGCCAGAAGCTATAGACATGCCAAACTTACTAAATTTATTATAGATTCTTGGCAATTAATATATTTTCAGAACTTGCATCACCTCTGTTAAA
i canFam3.chr33            C 0 C 0
e mm10.chr16                65461757 2469 -  98207768 I
e calJac3.chr17               962116 9856 -  74750902 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=6039.000000
s hg38.chr3_KI270935v1_alt    165164 27 +    197351 atcagtgtcagcagcagaagtttcatg
s panTro4.chr3             199802138 27 + 202329955 atcagtatcagcagcagaagtttcatg
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120918008 27 + 123690457 atcagtatcaGCAGCAGAAGTTTGATG
i nomLeu3.chr11            C 0 C 0
s macFas5.chr2                107456  3 + 192460366 --------------------TCT----
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                102922  3 - 187378091 --------------------TCT----
i papAnu2.chr2             C 0 C 0
s canFam3.chr33             29095247 27 +  31377067 ATCAGTATTAGCAGCAAAAGTTTCATG
i canFam3.chr33            C 0 C 0
e rheMac3.chrUn_JH291127       74686  3 +    111706 I
e mm10.chr16                65461757 2469 -  98207768 I
e calJac3.chr17               962116 9856 -  74750902 I
e chlSab2.chr15               455972  3 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=623418.000000
s hg38.chr3_KI270935v1_alt    165191 332 +    197351 acagCACCGTCC-----TTTT-TTTTAAAGTAAAGATTTTTGTAGTTCTTTATAAAAGTGGCACAGCtccattt-cagcaatatggaagaagagataagcctctaatagcaaaaccagccgatgccagataaatacaggttataaatgtaataaatgttttctaatgcagaggtgagatgagaagaaagaaagggaaacactcaggagtgaagaaGTTAACAACTAAGATGGTGAGTC----AATGCCCTTG-GAAATGTGCTGA----------CTGAAAGGCTGAA-------------AAAGGAAAGGAAGCAAGACCCTCGGTCACGACACTG--AACTGAGTTTC-CCTGCAAAAAGCTGGAACC
s panTro4.chr3             199802165 332 + 202329955 acagCACCGTCC-----TTTT-TTTTAAAGTAAAGATTTTTGTAGTTCTTTATAAAAGTGGCACAGCTCCGTTT-CAGCGATATGGAAGAAGAGATAAGCCTCTAATAGCAAAACCAGCCGATGCCAGATAAATACAGGTTATAAATGTAATAAGTGTTTTCTAATGCAGAGGTGAGATGAGAAGAAAGAAAGGCAAACACTCAGGAGTGAAGAAGTTAACAACTAAGATGGTGAGTC----AATGCCCTTG-GAAATGTGCTGA----------CTGAAAGGCTGAA-------------AAAGGAAAGGAAGCAAGACCCTCGGTCACGACACTG--AACTGAGTTTC-CCTGCAAAAAGCTGGAACC
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120918035 331 + 123690457 ACAGCACCATCC-----TTTT-TTTTAAAATAAAGATTTTTGTAGTTCTTTATAAAAGTGGCACAGCTCCGTTT-CAGCGATATGGAAGAAGAGATAAGCCTCTAATAGCAAAACCAGCCGATGCCAGATAAATGCATGTCATAAATGTAATAAGTATTTTC-AATGCAGAGGTGAGATGAGAAGAAAGAAAGGGAAGCACTCAGGAGAGAAGAAGTTAACAACTAAGATGGTGAGTC----AATGCCCTTG-GAAATGTGCTGA----------CTGAAAGGATGAA-------------AAAGGAAACGAAGCAAGACCTTCGGTCACGACACTG--AACTGAGTTTC-CCTGCAAAAAGCTGGAAcc
i nomLeu3.chr11            C 0 I 3742
s rheMac3.chrUn_JH291127       74689 328 +    111706 ACAGCACCATCC-----TTTT-TTT-----TAAAGATTTTTGT--TTCTTTATAAAAGTGGCACAGCTCCGTTT-TAGTGATAGGGAAGAAGACACGGGCCTTTAATAGCAAAACCAGCCGATGCC-GTTAAATACATGTTATAAATGTAACAAATGTTTTCTAATGCAGAGGCGAGATGAGAAGAAAGAAAGGGAAACACTCAAGAGTGAAGAAGTTAACAACTAAGATGGTGAGTCAATGAATGCCCTTG-GAAATTTGCTGA----------CTGAAAGGCTGAA-------------AAAGGAAAGGAAGCAAGAGCTTCGGTCAGGACACTG--CCCTGAGTTTC-CCTGCAAAAAGCTGGAACC
i rheMac3.chrUn_JH291127   I 3 C 0
s macFas5.chr2                107459 328 + 192460366 ACAGCACCATCC-----TTTT-TTT-----TAAAGATTTTTGT--TTCTTTATAAAAGTGGCACAGCTCCGTTT-TAGTGATAGGGAAGAAGACACGGGCCTTTAATAGCAAAACCAGCCGATGCC-GTTAAATACATGTTATAAATGTAACAAATGTTTTCTAATGCAGAGGCGAGATGAGAAGAAAGAAAGGGAAACACTCAAGAGTGAAGAAGTTAACAACTAAGATGGTGAGTCAATGAATGCCCTTG-GAAATTTGCTGA----------CTGAAAGGCTGAA-------------AAAGGAAAGGAAGCAAGAGCTTCGGTCAGGACACTG--CCCTGAGTTTC-CCTGCAAAAAGCTGGAACC
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                102925 330 - 187378091 ACAgcaccatccttttttttt-ttt-----taaagatttttgt--ttctttataaaagtGGCACAGCTCCGTTT-TAGCGATACGGAAGAAGATACGGGCCTTTAATAGCAAAACCAGCCGATGCCAGTTAAATACATGTTATAAATGTAACAAATGTTTTCTAATGCAGAGGCgagatgagaagaaagaaagggaaacacTCAAGAGTGAAGAAGTTAACAACTAAGATGGTGAGTC----AATGCCCTTG-GAAATTTGCTGA----------CTGAAAGcctgaa-------------aaaggaaaggaagcaagagCTTCGGTCAGGACACTG--CCCTGAGTTTC-CCTGCAAAAAGCTGGAACC
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               455975 330 -  91754291 ACAGCACCATCC-----TTTTATTT-----TAAAGATTTTTGT--TTCTTTATAAAAGTGGCACAGCTCCATTT-TAGCGATATGGAAGAAGACACGGGCCTTTAATAGCAAAACCAGCCGATGCCAGTTAAATACATGTTATAAATGTAACGAATGTTTTCTAATGCAGAGGCGAGATGAGAAGAAAGAAAGGGAAACACTCAAGAGTGAAGAAGTTAACAACTAAGATGGTGAGTCAATGAATGCCCTTG-GAAACTTGCTGA----------CTGAAAGGCTGAA-------------AAAGGAAAGGAAGCAAGAGCTTCGGTCAGGACACTG--CCCTGAGTTTC-CCTGCAAAAAGCTGGAACC
i chlSab2.chr15            I 3 C 0
s canFam3.chr33             29095274 325 +  31377067 ATAGCATAGTCC-----ACTT-TTT--AAGTAAATATTTTTGT--TTGTTTAT--AAGTGATACAACTCCATTTCTAGCAATATGGCAGAAGAGATAAGCCTTTAATCACAAAACCTGCAAATGCCAGAT--------------AATGT---------------GTGCAGAGTTGAGACCAGAAGAAAGGAAGGGAAACAATCAGGGGCGAGGGAGCTGAAACCTGAGCTGGTAAGTC----AGGACTCTTGCGGGATCTGCAGACCTTTGAGATCTAGAGTGTTGAGTGTTAAGGGCTCCATGGAAAAGGAGACACATTCTTAGATTAGGACACTGTAAATTGAATATCTTCTGCATCAATCTGTCACC
i canFam3.chr33            C 0 C 0
e mm10.chr16                65461757 2469 -  98207768 I
e calJac3.chr17               962116 9856 -  74750902 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=291534.000000
s hg38.chr3_KI270935v1_alt    165523 232 +    197351 GCCAGCAAAAAAGGTGGACTAGAAAGACCAGGAAGAAAAAAGAAaaaggaagcagaatgaaggatatagt----aacagaccagaactcactatagaaacaattaaaaatggaataaatgaagccaaagattagttctttgaaaataaa----acaaacacctggca--------------agagaaagaaagt------ggggggggggtgggaggagggagagagagagacag-aaaagacacagatatcaagattatt
s panTro4.chr3             199802497 229 + 202329955 GCCAGCAAAAAACGTGGACTagaaagaccaggaagaaaaaagaaaaaggaagcagaatgaaggatatagt----aacagaccagaactcactatagaaacaattaaaaatggaataaatgaagccaaagattagttctttgaaaataaa----gcaaacatctggca--------------agagaaagaaagt---------gggggggtgggaggagggagagagagagacag-aaaagacacagatatcaagattatt
i panTro4.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       75017 227 +    111706 GCCAGC-AAAACGGTGGACTGGAAAGACCAGGAAGAAAAAAGAAaaaggaagtaaaacgaaggatatggt----aacagatcagaactcgctatagaaacaattaaaaatggaatcaatgaagccaaaggttagttcttcgataataaaacagacaaacacctggca--------------agagaaagcgaga---------gagtg---gggaggagggag--agagacacgg-aagagacacagataccaagatcatt
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                107787 216 + 192460366 GCCAGC-AAAACGGTGGACTGGAAAGACCAGGAAGAAAAAAGAAaaaggaagtaaaacgaaggatatggt----aacagatcagaactcgctatagaaacaattaaaaatggaatcaatgaagccaaaggttagttcttcgaaaataaaacagacaaacacctggca--------------agagaaagcgaga---------gagtg---gggaggagggag--------------agagacacagataccaagatcatt
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                103255 227 - 187378091 GCCAGC-AAAACGGTGGACTGGAAAgaccaggaagaaaaaagaaaaaggaagtaaaatgaaGGATATGGT----AACAGATCAGAACTCGCTatagaaacaattaaaaatggaatcaaTGAAGCCAAAGGTTAGTTCTTcgaaaataaaacagacaaacacctggca--------------agagaaagagaga---------gagtg---gggaggagggag--agagacacag-aagagacacagaTATCAAGATCGTT
i papAnu2.chr2             C 0 I 311
s chlSab2.chr15               456305 227 -  91754291 GCCAGC-AAAATGGTGGACTAGAAAGACCAGGAAGAAAAAAGAAaaaggaagtaaaacgaaggatatggt----aacagatcggaactcgctatagaaacaattaaaaatggaatcaatgaagccaaaggttagttcttcgaaaataaaacagacaaacacctggca--------------agagaaagagaga---------gagtg---gggaggagggag--agagacacag-aagagacacagatatcaagatcatt
i chlSab2.chr15            C 0 C 0
s canFam3.chr33             29095599 245 +  31377067 CTTAGA-GAAAAGGTGAACCA-AAAAATCAGAAAGAAGAAAGGAaaagaaagcttaatgaaggatataattaagaaaaggacataattaa--gcagaaagaatttaaaatagaatca---aagccaaaagttgattttttgaagatatgctagacaaacttttggcaaggtgaattaagGCAGagaaagaaagaagaaaaagaaagaa---agaaagaaagaa--agaaagaaagaaagaaagaaagaaagaaagaa----
i canFam3.chr33            C 0 C 0
e mm10.chr16                65461757 2469 -  98207768 I
e calJac3.chr17               962116 9856 -  74750902 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120918366 3742 + 123690457 I

a score=59220.000000
s hg38.chr3_KI270935v1_alt    165755 43 +    197351 agaaacaaaaaagggtacataacttcag-aaaaaaaat-ttaaga
s panTro4.chr3             199802726 44 + 202329955 agaaacaaaaaagggtacataacttcagaaaaaaaaat-ttaaga
i panTro4.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       75244 42 +    111706 agaaacaaaaaagggtacataacttcag--aaaaaaat-tcaaga
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                108003 42 + 192460366 agaaacaaaaaagggtacataacttcag--aaaaaaat-tcaaga
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                103793 42 - 187378091 agaaacaaaaaagggtacataacttcag--aaaaaaat-ttaaga
i papAnu2.chr2             I 311 C 0
s chlSab2.chr15               456532 42 -  91754291 agaaacaaaaaagggtacataacttcag--aaaaaaat-ttaaga
i chlSab2.chr15            C 0 C 0
s canFam3.chr33             29095844 43 +  31377067 agaaagaaagaaagaaagaaaacagaaa--ggaagaaTATTAAGa
i canFam3.chr33            C 0 I 5911
e mm10.chr16                65461757 2469 -  98207768 I
e calJac3.chr17               962116 9856 -  74750902 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120918366 3742 + 123690457 I

a score=413574.000000
s hg38.chr3_KI270935v1_alt    165798 399 +    197351 gacagtgctctgatgaatttataccaaaaagtatgaaaacttagataaattggatatactgtccttaaaaatataatttatcaaaaatgaattaagaaaaaaa-----cctggctaaaaactattttattttatttatttaattttatttatttatttttttgaaacagagtcttgctttgttgcccaggctggagtgcaatggcatgatctcagctcactgca------------------------------------------------------------acctctgcctcccaggttcaagattctcctgcttcagcctcccaagtagctgggatt---------------------------------------------------------acaggcgcatgccaccacgcccggctaatttttgtatttttagtagagactgggtttcaccatgtcgtcctggctggtctcaaactcctgacctcaggtgatctacccacctcggcatcccaa
s panTro4.chr3             199802770 399 + 202329955 gacagtgctctgatgaatttataccaaaaaatatgaaaac--agataaattggatatactgtccttaaaaatataatttatcaaaaatgaattaagaaaaaaa---agCCTGGCTATAAACTATTTTATtttatttatttaattttatttatttatttttttgaaacagagtcttgctttgttgcccaggctggagtgcagtggcatgatctcagctcactgca------------------------------------------------------------acctctgcctcccaggttcaagattctcctgcttcagcctcccaagtagctgggatt---------------------------------------------------------acaggcgcccgccaccacgcccggctaatttttgtatttttagtagagactgggtttcaccatgtcgtcctggctggtctcaaactcctgacctcaggtgatctacccacctcggcatcccaa
i panTro4.chr3             C 0 M 527
s rheMac3.chrUn_JH291127       75286 403 +    111706 gacagtgctctgatgaatctataccaaaaaatatgaaaacgtagataaattggatatagtgtccttaaaaatataacttatcaaaaatgaattaagaaaaaaagaaaacctggctataaactatcttatttatttaattttgttttatttatttatttttttgagacagggtcttgctttgtcacccaggctg-------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn---------------------------------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn------------------------------tttgtatttttagtagagactgggtttcaccatgtcgtcctggctggtctcaaactcctgacctcagctaatccacccacctcggcatcccaa
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                108045 404 + 192460366 gacagtgctctgatgaatctataccaaaaaatatgaaaacgtagataaattggatatagtgtccttaaaaatataacttatcaaaaatgaattaagaaaaaaagaaaacctggctataaactatcttatttatttaattttgttttatttatttatttttttgagacagagtcttgctttgtcacccaggctggagtgcagtggcatgatctcggctcactgca------------------------------------------------------------atctctacctcccaggttcaagattctcctgcctcaacctcccaagtagctgcgatt---------------------------------------------------------acaggcgcctgccaccacgcctggctaatttttgtatttttagtagagactgggtttcaccatgtcgtcctggctggtctcaaactcctgacctcagctaatccacccacctcggcatcccaa
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                103835 403 - 187378091 gccAGTGCTCTGATGAATTTAtaccaaaaaatatgaaaacgtAGATAAATTGGATATAGTGTCCTTAAAAATATAGCTTAtcaaaaatgaattaagaaaaaaagaaaacctggctataaactatcttatttatttaattttgtgttatttatttatttttttgagacagagtcttgctttgtcacccaggctggagtgcagtggcgtgatctcggctcactgca------------------------------------------------------------atctctgcctcccaggttcaagattctcctgcctcagcctcccaagtagctgcgatt---------------------------------------------------------acaggcgcgtgccaccgcgcctggctaatttttg-atttttagtagagactgggtttcaccatgtcgtcttggctggtctcaaactcctgacctcagctaatccacccacctcggcatcccaa
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               456574 403 -  91754291 gacagtgccctgatgaatttataccaaaaaatatgaaaacgtagataaattggatatagtgtccttaaaaatataacttatcaaaaatgaattaagaaaaaaagaaaacctgGCTATAAACTA-CTTATTTATTTAAttttgttttatttatttatttttttgagacagagtcttgctttgtcacccaggctggagtgcagtggcatgatctcggctcactgca------------------------------------------------------------atctccacctcccaggttcaagattttccggcctcagcctcccaagtagctgcgatt---------------------------------------------------------acaggcgcccgccaccacgcctggctaatttttgtatttttagtagagattgggattcaccatgtcatcctgactggtctcaaactcctgacctcagctaatccacccacctcggcatcccaa
i chlSab2.chr15            C 0 C 0
e mm10.chr16                65461757 2469 -  98207768 I
e canFam3.chr33             29095887 5911 +  31377067 I
e calJac3.chr17               962116 9856 -  74750902 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120918366 3742 + 123690457 I

a score=228603.000000
s hg38.chr3_KI270935v1_alt    166197 264 +    197351 agtgctgggattacaggcatgagccacctcgccctgccactataaactattttaaattgaatcagcagtttaaaaaatataatctaggccgggtgcggtggctcacgcctgtaatcctaacacgttgggagggtgaggcaggcggatcatgaggtcaggagattgagaccatcctggctaacacggtg--aaaaaaaaattagctgggcatggtggcaggcgcctgtagtcccagctactctggaggctgaggcaggagaacggcg
s rheMac3.chrUn_JH291127       75689 265 +    111706 agtgctgggattacaggcatgagccacctcgaccggtcgctataaactattttaaattgaatcaacagtttaaaaaatataatctaggctaggcgaggtggctcacgcctgtaatcccagcactttgggaggccgaggctggcggatcacaaggtcaggagatcgagaccatcctggctaacacggtg-aaaaaaaaaattagccgggcatggtggtgggtgcctgtagtcccagctactcaggaggctgaggcaggagaatggcg
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                108449 266 + 192460366 agtgctgggattacaggcatgagccacctcgaccggtcgctataaactattttaaattgaatcaacagtttaaaaaatacaatctaggccgggcgaggtggctcatgcctgtaatcccagcactttgggaggccgaggctggcggatcacaaggtcaggagatcgagaccatcctggctaacacggtgaaaaaaaaaaattagccaggcatggtggtgggtgcctgtagtcccagctactcaggaggctgaggcaggagaatggcg
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                104238 265 - 187378091 agtgctgggattacaggcatgagccacctcgacCGGTCgctataaactattttaaattgaatcaacagtttaaaaaatataatctaggctaggcgaggtggctcacgcctgtaatcccagcactttgggaggccgaggctggcggatcacaaggttaggagatcgagaccatcctggctaacacggtg-aaaaaaaaaattagccgggcgtggtggcgggcgcctgtagtcccagctactcaggaggctgaggcaggagaatggca
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               456977 266 -  91754291 agtgctgggattacaggcatgagccaccTTCACCGGTCGCTATAAACTATTTTAAATTGAATCAACAGTTTAAAAAATATAATCTAggctgggcgaggtggctcacgcctgtaatcccagcactttgggaggccaaggctggcagatcacaaggtcaggagatcgagaccatcctggctaacacggtgaaaaaaaaaaattagccgggcatggtggtgggtgcctgtagtcccagctactcaggaggctgaggcaggagaatggcg
i chlSab2.chr15            C 0 C 0
e mm10.chr16                65461757 2469 -  98207768 I
e canFam3.chr33             29095887 5911 +  31377067 I
e calJac3.chr17               962116 9856 -  74750902 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120918366 3742 + 123690457 I
e panTro4.chr3             199803169 527 + 202329955 M

a score=1651295.000000
s hg38.chr3_KI270935v1_alt    166461 1322 +    197351 tgaacctgggaggcagaggttgcagtgagcggagatcatgccattgcactccagcctgggtgacaaggtgagactccgtctcaaaaaa-aaatatgtatatataatctatccaccccacaaaaaaatgcaggctaagatgagtttacaggcaaatcagacattcaaggaacaggtaatttcaattctatacaaacatattcagagtttggaacaggaggaaatgatctactaataattttataaggttggaaaccaaagataggataagaaagacaaactatagattaataagtcccagtaataatacatggaagcatcgtaaataaaatattagcaagcc---------------aaagtgcatcatggccgggcgcggcggctcacgcctgtaaccccaacactttggca-ggccgaggcaggcggatcacttgaggccgggagttccagaccagcctggccaacctagagaaaccccgtctctggtaaaaatac--aaaaaatttgta--tttttttggattacaggtgtgtgctgggcttggtggcacacacctgtaatcccagctactcaggaggctgaggcacgagaattgcttgaacccaggaggcagagattgcagtgagccgagattgtgccactgcactccagcct-ggtgacagagcaggactctatc--------------------ttaaataaataaataaataaataaataaataaatattttaaaagtacatcatgatcaagctgagtttaaatcagaaatgcaagataaagacaatgctttcttaatgtaaatcaccatataaacagaatggaggggagacacaatcacc---acagcagatacaggaaagttatttgataaaagtcaacacttactcctgttaaaactcctagcaaactaaaaagagacgttaactcttttaacctgataaacaatgtcaattataaccccgtgtaaacattatacttaaaacaatagaaacgtttctgtaaaatcaggaataaaaacaagatgccaacaatcactgcttctaatcaacattaggttgaaggttttagctggtgaaataagacgagaaaattaaacaaaaagtatgagagtacagaaatgtgattttgggtatggaagggatgaaacaagcctatggttatttgcagataacataattgtttacatagaaacttcccaaacatatacattattagcaaagttctatatccataatcaaaattttaaaaataattgcattccagctgggtgtggtgattcatgcctg-aatcccagtgctttgagaggctgaggcaggaggaacacttgaggccaggagttcaagaccagcctgggtaaca
s panTro4.chr3             199803696 1310 + 202329955 tgaacctgggaggcagaggttgcagtgagcggagatcatgccattgcactccagcctgggtgacaaggtgagactccgtctcaaaaaa-aaa-aTGTATATATAATCTATCCACCCCACAAAAAAATGCAGGCTAAGATGAGTTTACAGGCAAATcagacattcaaggaataggtaatttcaattctatacaaacgtattcagagtttggaacagaaggaaatgatctactaataattttataaggttggaaaccaaagataggataagaaagacaaactatagattaataagtcccagtaataatagatggaagcatcgtaaataaaatattagcaagcc---------------aaagtgcatcatggccgggcgcggcggctcacacctgtaaccccaacactttggca-ggccgaggcgggcggatcacttgaggctgggagttccagaccagcctggccaacctagagaaaccccgtctctggtaaaaatac--aaaaaatttgta--tttttttggattacaggtgtgtgctgggcttggtggcacacacctgtaatcccagctactcaggaggctgaggcacgagaattgcttgaacccaggaggcagagattgcagtgagccaagattttgccactgcactccagcct-ggagacagagcaggactctatc--------------------ttaaataaataaataaataaata------------ttttaaaagtacatcatgatcaagctgagtttaaatcagaaatgcaagataaagacaatgctttcttaatgtaaatcaccatgtaaacagaatggaggggagacacaatcacc---acagcagatacaggaaagttatttgataaaagtcaacacttactcctgttaaaactcctagcaaactaaaaagagacgttaactcttttaacctgataaacaatgtcaattataaccccgtgtaaacattatacttaaaacaatggaaacgtttctgtaaaatcaggaataaaaccaagatgccaacaatcactgcttctaatcaacattaggttgaaggttttagctggtgaaataagacgagaaaattaaacaaaaagtatgagagtacagaaatgtgattttgggtatgggagggatgaaacaagcctatggttatttgcagataacctaattgtttacatagaaaattcccaaacatatacattattagcaaagttctacatccataatcaaaatttttaaaataattgcattccagctgggcatggtgattcatgcctgcaatcccagggcttcgagaggctgaggcaggaggaacacttgaggccaggagttcaagaccagcctgcgcaaca
i panTro4.chr3             M 527 C 0
s rheMac3.chrUn_JH291127       75954 1315 +    111706 tgaacctgggaggcagaggttgcagtgtgccaagatcgcgccattgcactccagtctgggtgacgaggcaagactccgtctcaaaaaa-aaatatgtatatataatctatccaccccacaaaaaaatgtaggctaagatgagtttacaggcaaatcagacattcaaggaataggtaatttcaattctatacaaacttattcagagtttagaacaggaggaaatgatctgctactaattttataaggttggaaaccagagct-ggataagaaagacaaactacagat-------------taataatagatggaagcatcataaataaaatattaacaagtcaaagtagaattttaaaaagtgcatcatggccgaacgcagtcgctcacacctgcaaccccaacac--tggcagggccgaagcgggtggatcacttggagccaggagttccagaccagcctggccaacctagagaaaccctgtctctggtaaaaatac-aaaaaaaattgtatttttttttggattacagctgtgtgctgggcttggtggcatacacctgtaatcccagctactcgggaggctgaggcacgagaattgcttgaacccaggaggcggaggttgtagtgagctgagattgtgccactgcagtccagcctgggtgacagagcaggactctatc--------------------atatataaataaataaataagaa------------ttttaaaagtacatcacgatcaagctgagtttaaatcagaaatgcaagataaagacaatgctttcttaatgtaaatcaccatataaacagaatggaggggaaacacaatcacc---gcagcagatacaggaaaattatttgataaaagtcagcacttattcccgttaaaactccaggcaaactaaaaggagacgttaactctcttaacctgataaacaatgtcaattataaccctatgtaaacattatacttaaaacactggaaacgtttccgtaaaatcaggaatgaaaccaagatgccaacaatcaccgcttctaatcaacattcggttgaaggttttagctggtgaaataagacgagaaaaataaacaaaaggtatgagagtacacaaaagttattttgggtatggaagggatgaaataagccaatggttatttgcagataacataattgtttacatagaaacttcccaaatatataaattattagcaaagttttacatccataatcaaaattttaaaaataattgcattccAgctgggtgtggtggttcatgcctgtaatcccagtgctttgagaggctgaggcaggaggaacacttgaggccaggcattcgagaccagcctgggcaaca
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                108715 1316 + 192460366 tgaacctgggaggcagaggttgcagtgagccgagatcgtgccattgcactccagtctgggtgacaaggcgagactccgtctcaaaaaatatatatgtatatataatctatccaccccacaaaaaaatgtaggctaagatgagtttacaggcaaatcagacattcaaggaagaggtaatttcaattctatacaaacttattcagagtttagaacgggaggaaatgatctgttactaattttataaggttggaaaccagagct-ggataagaaagacaaactacagat-------------taataatagatggaagcatcataaataaaatattaacaagtcaaagtagaattttaaaaagtgcatcatggctggacgcggtcgctcatgcctgtaaccccaacac--tggca-ggtcgaagcgggtggatcacttggggccaggagttccaaaccagcctggccaacctagagaaaccctgtctctggtaaaaatacaaaaaaaaattgtatttttttttggattacagctgtgtgctgggcttggtggcatacacctgtaatcccagctactcaggaggctgaggcacgagaatggcttgaacccaggaggcggaggttgtagtgagctgagattgtgccactgcagtccagcctgggtgacagagcaggactctatc--------------------ataaataaataaataaataagaa------------ttttaaaagtacatcatgatcaagctgagtttaaatcagaaatgcaagataaagacaatgctttcttaatgtaactcaccatataaacagaatggaggggaaacacaatcacc---gcagcagatacaggaaaattatttgataaaagtcagcacttattcccgttaaaactccaggcaaactaaaaggagacgttaactctcttaacctgataaacaatgtcaattataaccctatgtaaacattatacttaaaacactggaaacgtttccgtaaaatcaggaatgaaaccaagatgccaacaatcactgcttctaatcaacattcagttgaaggttttagctggtgaaataagatgagaaaaataaacaaaaggtatgagagtacacaaaagttattttgggtatggaagggatgaaataagccaatggttatttgcagataacataattgtttacatagaaacttcccaaatatataaattattagcaaagttttacatccataatcaaaattttaaaaataattgcattccagctgggtgtggtggttcatgcctgtaatcccagtgctttgagaggctgaggcaggaggaacacttgaggccaggcattcgagaccagcctgggcaaca
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                104503 1317 - 187378091 tgaacctgggaggcagaggttgcagtgagccgagatcgtgccattgcactccagtctgggtgacaaggcgagactctgtctcaaaaaaaatatatgtatatataatctatCCACCCCACaaaaaaaTGTAGGCTAAGATGAGTTTACAGGCAAATCAGACATTCAAGGAATAGGTAATTTCAATTCTATACAAACTTATTCAGAGTTTAGAACAGGAGGAAATGATCTGCTACTAATTTTATAAGGTTGGAAACCAGAGCT-GGATAAGAAAGACAAACTACAGAT-------------TAATAATAGATGGAAgcatcataaataaaatattaacaagtcaaagtagaattttaaaaagtgcatcaTGGCCAAACGCGGTCGCTCACGCCTGCAACCCCAACAC--TGGCagggccgaagcgggtggatcacttggagccaggagttccagaccagcctggccaacctagagaaaccctgtctctggtaaaaatacaaaaaaaaattgtatttttttttggattacagctgtgtgctgggcttggtggcatacacctgtaatcccagctactcgggaggctgaggcatgagaattgcttgaacccaggaggcggaagttgtagtgagctgagattgtgccactgcagtccagcctgggtgacagagcaggactctatc--------------------ataaataaataaataaataacaa------------ttttaaaagtacatcaTGATCAAGCTGAGTTTAAATCAGAAATGCAAGATAAAGACAATGCTTTCTTAATGTAAatcaccatataaacagaatggAGGGGAAACACAATCACC---GCAGCAGATACaggaaaattatttgataaaagtCAGCACTTATTCCCGTTAAAACTCCAGGCAAACTAAAAGGAGACATTAACTCTCTTAACCTGATAAACAATGTCAATTATAACGCTATGTAAACATTATACTTAAAACACTGGAAACGTTTCcgtaaaatcaggaataaaaccAAGATGCCAACAATCACTGCTTCTAATCAACATTCGGTTGAAGGTTTTAGCTGGTGAaataagatgagaaaaataaacaaaaggcatGAAAGTACACAAAAGTTATTTTGGGTAtggaagggatgaaataagccaatggttatttgcagataacataattGTTTACATAGAAACTTCCCAAACATATAAATTATTAGCAAAGTTTTACATccataatcaaaattttaaaaataattgcattcccgctgggtgtggtggttcatgcctgtaatcccagtgctttgagaggctgaggcaggaggaacacttgaggccgggcattcgagaccagcctgggcaaca
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               457243 1338 -  91754291 tgaacctgggaggcagaggttgcagtgtgccaagatcacgccattgcactccagtctgggtgacaaggcgagactccgtctcaaaaaaaaTATATGTATATATAATCTATCCACCccacaaaaaaatgtaggctaagatgagtttacaggcaaatcagacattcaaggaataggtaatttcaattctatacaaacttattcagagtttagaacaggaggaaatgatctgctactaattttgtaaggttggaaaccagagct-ggataagaaagacaaactagagat-------------taataatagatggaagcatcataaataaaatattaacaagtcaaagcagaattttaaaaagtgcatcatggccggacacggtcgcttacgcctgtaaccccaacac--tggcagggccgaagcgggtggatcacttggggccaggagttccaaaccagcctggccaacctagagaaaccctgtctctggtaaaaatac-caaaaaaattgta-ttttttttggattacagctgtgtgctgggcttggtggcatacacctgtaatcccagctactcgggaggctgaggcacgagaattgctggaacccaggaggcggaggttgtagtgagctgagattgtgccactgcagtcccgcctgggtgacagagcaggactctgtcataaataaataaataaataaataaataaataaataaataaGAA------------ttttaaaagtacatcatgatcaagctgagtttaaatcagaaatgcaagataaagacaatgctttcttaatgtaaatcaccatataaacagaatggaggggaaacacaatcaccacagcagcagatacaggaaaagtattcgataaaagtcagcacttattcccgttaaaactccaggcaaactaaaaggagacgttaactctcttaacctgataaacaatgtcaattataaccctatgtaaacattatacttaaaacactggaaacgtttccgtaaaatcaggaataaaaccaagatgccaacaatcactgcttctaatcaacattcggttgaaggttttagctggtgaaataagacgagaaaaataaacaaaaggtatgagagtacacaaaagttattttgggtatggaagggatgaaataagccaatggttatttgcagataacataattgtttacatagaaacttcccaaacatataaattattagcaaagttttacatccataatcaaaatttttaaaataattgcattccagctgggtgtggtggttcatgcctgtaatcccagtgctttgagaggctgagacaggaggaacacttgaggccgggcattcgagaccaacctgggcaaca
i chlSab2.chr15            C 0 C 0
e mm10.chr16                65461757 2469 -  98207768 I
e canFam3.chr33             29095887 5911 +  31377067 I
e calJac3.chr17               962116 9856 -  74750902 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120918366 3742 + 123690457 I

a score=225165.000000
s hg38.chr3_KI270935v1_alt    167783 177 +    197351 tagcaagatcctgtctctacagaaataaaaaataaaaaaataa---aaaattagctgggcatagtagcacacacatatagttccagctactc-agaagttgaggggggaggatcacttgagcccaagagttcgaggctgcagtgagctatgatcaccccactgtactccagcctgcatgac
s panTro4.chr3             199805006 177 + 202329955 tagcaagatcctgtctctacagaaataaaaaataaaaaaataa---aaaattagctgggcatagtagcacacacatatagttccagctactc-agaagttgaggggggaggatcacttgagcccaagagttcgaggctgcagtgagctatgatcaccccactgtactccagcctgcatgac
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120922108 147 + 123690457 tagcaaagttctacatccat---aatcaaaattttaaaaataattgcattccAgctgggcatggtggttcatgcctgtaatcccagtgctttgagaggctgaggcaggaggaacacttgaggccaggagttcgaga-------------------------------ccagcctgggcaac
i nomLeu3.chr11            I 3742 C 0
s rheMac3.chrUn_JH291127       77269 167 +    111706 tagcaagatcctgtctctacagaaataaaaacgaaaaa-------------tagctgggcccggtagcacacacatagagttccagcgactc-agaggttgatggggaaggatcacttcagcccaagagttcaaggctgcagtgagctacgatcgccccactgcactccagcctgcatgac
i rheMac3.chrUn_JH291127   C 0 I 137
s macFas5.chr2                110031 167 + 192460366 tagcaagatcctgtctctacagaaataaaaacgaaaaa-------------tagttgggcctggtagcacacacatagagttccagcgactc-agaggttgatggggaaggatcacttcagcccaagagttcaaggctgcagtgagctacgatcgccccactgcactccagcctgcatgac
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                105820 167 - 187378091 tagcaagatcctgtctctacagaaataaaaacgaAAAA-------------TAGCTGGGCCCGGTAGCACACACATAGAGTTCCAGCGACTC-AGAGGTTGATgaggaaggatcacttcagcccaagagttcaaggcttcagtgagctacgatcgccccactgcactccagcctgcatgac
i papAnu2.chr2             C 0 I 3
s chlSab2.chr15               458581 167 -  91754291 tagcaagatcctgtctctacagaaataaaaacaaaaaa-------------tagctgggcccagtagcacacacatagagttccagcgactc-agaggttgatggggaaggagcacttcagcccaagagttcaaggctgcagtgagctacgatcgccccactgcactccagcctgcatgac
i chlSab2.chr15            C 0 C 0
e mm10.chr16                65461757 2469 -  98207768 I
e canFam3.chr33             29095887 5911 +  31377067 I
e calJac3.chr17               962116 9856 -  74750902 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=553219.000000
s hg38.chr3_KI270935v1_alt    167960 321 +    197351 agagggagactctgtctc------aaaaagagatttaaaaacaaaa-----------taaaactgcattcctatatatcagtgaaagagaaaatatttttaagactatagtgtttatgatggtgacc-aaaaaaagtacataaaaataaatctaacaaaagatgtgcttaatctttatggacaaaattgtacaactgcattgaaatatgccaaagaaaacacacataCTGGTTACGTGCATTTGGGAACATT--TATAGTTGAAAGATCAAAACCCATAATCTTGCTACCAGACAATGCttccttccaggatgtttttatgctttaaaaaatatatagttt
s panTro4.chr3             199805183 321 + 202329955 agagggagactctgtctc------aaaaaaagatttaaaaacaaaa-----------taaaactgcattcctatatatcagtgaaagagaaaatatttttaagactatagtgtttatgatggtgacc-aaaaaaagtacataaaaataaatctaacaaaagatgtgcttaatctttatggacaaaattgtacaactgcattgaaatatgccaaagaaaacacacataCTGGTTACGTGCATTTGGGAACATT--TATAGTTGAAAGATCAAAACCCATAATCTTGCTACCAGACAATGCttccttccaggatgtttttatgctttaaaaaatatatagttt
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120922255 340 + 123690457 atagcaagatcctgtctctacagaaataaaaaataaaaaaataaaAAATTAGCTGGGCATGGTAgcactcctatatatcagtgaaacagaaaatatttttaagactatagtgtttatgatagtgacc-aaaaaaagtacgtaaaaataaatctaacaaaagatgtgcttaatctttatggacaaaattgtacaactgcattgaaatatgccaaagaaaacacacataCTGGTTACGTGCATTTGGGAACATTGAGATAGTTGAAAGATCAAAACCCATAATCTTGCTACCAGACAATGCttccttccaggatgtttttatgctttaaaaaatatacagttt
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       77573 326 +    111706 agagggagactctgcctc------aaaacaagattaaaaaaccaaaaaa---------aaaaCtgcattcctatatatcagtgaaagagaaaatatttttaagactatagtgtttatgatggtgaccaaaaaaaagtacataaaaataaatctaacaaaaaacgtgcttaatctttgtggacaaaattgtacaactgcattgaaatacgccaaagaaaacacacataCTAGTTACGTGCATTTGGGAACATTTAGATAGTTGAAAGATCAAAACCCATAATCTTGCTACTAGATAACGCTTCCTTCTAGGATTTTTTTATGCTTTAAAAAATATATAGTTT
i rheMac3.chrUn_JH291127   I 137 I 8
s macFas5.chr2                110198 329 + 192460366 agagggagactctgcctc------aaaacaagattaaaaaacaaaaaaaaa------caaaactgcattcctatatatcagtgaaagagaaaatatttttaattctatagtgtttatgatggtgaccaaaaaaaagtacataaaaataaatctaacaaaaaacgtgcttaatctttgtggacaaaattgtacaactgcattgaaatatgccaaagaaaacacacataCTAGTTACGTGCATTTGGGAACATTTAGATAGTTGAAAGATCAAAACCCATAATCTTGCTACCAGATAACGCTTCCTTCTAGGATTTTTTTATGCTTTAAAAAATATATAGTTT
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                105990 323 - 187378091 agagggagactctgcctc------aaaacaagattaaaaaacaaaa------------aaaactgcattCCTATATatcagtgaaagagaaaatatttttaagactatAGTGTTTATGATGGTGaccaaaaaaaagtacataaaaataaatctaacaaaaaacGTGCTTAATCTTTGTGGACAAAATTGTACAACTGCATTGAAATATGCCAAAGAAAACACACATACTAGTTACGTGCATTTGGGAATATTTAGATAGTTGAAAGATCAAAACCCATAATCTTGCTACTAGATAAGGCttccttctaggatttttttatgctttaaaaaatatatagttt
i papAnu2.chr2             I 3 C 0
s chlSab2.chr15               458748 323 -  91754291 agagggagactctgcctc------aaaacaagattaaaaaacaaaa------------aaaactgcattcctatatatcagtgaaagagaaaatatttttaagactatagtgtttatgatggtgaccaaaaaaaagtacataaaaataagtctaacaaaaaacgtgcttaatctttgtggacaaaattgtacaactgcattgaaatatgccaaagaaaacacacataCTAGTTACGTGCATTTGGGAACATTTAGATAGTTGAAAGATCAAAACCCATAATCTTTTTGCTAGATAAGGCTTCCTTCTAGGATTTTTTTATGCTTTAaaaaatatatagttt
i chlSab2.chr15            C 0 C 0
e mm10.chr16                65461757 2469 -  98207768 I
e canFam3.chr33             29095887 5911 +  31377067 I
e calJac3.chr17               962116 9856 -  74750902 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=2919.000000
s hg38.chr3_KI270935v1_alt    168281 4 +    197351 aggc
s panTro4.chr3             199805504 4 + 202329955 aggc
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120922595 4 + 123690457 aggc
i nomLeu3.chr11            C 0 C 0
s macFas5.chr2                110527 4 + 192460366 TAGC
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                106313 4 - 187378091 tagc
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               459071 3 -  91754291 -ggc
i chlSab2.chr15            C 0 C 0
e rheMac3.chrUn_JH291127       77899 8 +    111706 I
e mm10.chr16                65461757 2469 -  98207768 I
e canFam3.chr33             29095887 5911 +  31377067 I
e calJac3.chr17               962116 9856 -  74750902 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=2331.000000
s hg38.chr3_KI270935v1_alt    168285 4 +    197351 cagg
s panTro4.chr3             199805508 4 + 202329955 cagg
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120922599 4 + 123690457 cggg
i nomLeu3.chr11            C 0 C 0
s macFas5.chr2                110531 4 + 192460366 CAGT
i macFas5.chr2             C 0 C 0
s chlSab2.chr15               459074 4 -  91754291 cggg
i chlSab2.chr15            C 0 C 0
e rheMac3.chrUn_JH291127       77899 8 +    111706 I
e mm10.chr16                65461757 2469 -  98207768 I
e canFam3.chr33             29095887 5911 +  31377067 I
e calJac3.chr17               962116 9856 -  74750902 I
e papAnu2.chr2                106317 0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=23669.000000
s hg38.chr3_KI270935v1_alt    168289 45 +    197351 cgtggtggctcacacctgtaatcccagcgctttgtgaggctgagg
s panTro4.chr3             199805512 45 + 202329955 cgcggtggctcacacctgtaatcccagcgctttgtgaggctgagg
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120922603 45 + 123690457 cgtggtggctcacacctgtaatcccagcactttgtgaggctgagg
i nomLeu3.chr11            C 0 C 0
s chlSab2.chr15               459078 45 -  91754291 cgcggtggctcacgcctgtaatcccagcactttgggaggccgagg
i chlSab2.chr15            C 0 I 166
e rheMac3.chrUn_JH291127       77899  8 +    111706 I
e mm10.chr16                65461757 2469 -  98207768 I
e canFam3.chr33             29095887 5911 +  31377067 I
e calJac3.chr17               962116 9856 -  74750902 I
e macFas5.chr2                110535  0 + 192460366 C
e papAnu2.chr2                106317  0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=26017.000000
s hg38.chr3_KI270935v1_alt    168334 98 +    197351 tgggcggatcatgaggtcaggagatcgagaccatcctggctaacagggtgaacccccgtctctactaaaaatacaaaaaaattagccgggcgtggtgg
s panTro4.chr3             199805557 98 + 202329955 tgggcggatcatgaggtcaggagatcgagaccatcctggctaacacggtgaacccccgtctctactaaaaatacaaaaaaattagccgggcgtggtgg
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120922648 98 + 123690457 tgcgcggatcatgaggtcaggagattgagaccatcctggctaacacggtgaaaccccatctctactaaaaatacaaaaaaattagccgggcatggtgg
i nomLeu3.chr11            C 0 C 0
e rheMac3.chrUn_JH291127       77899  8 +    111706 I
e mm10.chr16                65461757 2469 -  98207768 I
e canFam3.chr33             29095887 5911 +  31377067 I
e calJac3.chr17               962116 9856 -  74750902 I
e chlSab2.chr15               459123 166 -  91754291 I
e macFas5.chr2                110535  0 + 192460366 C
e papAnu2.chr2                106317  0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=1758.000000
s hg38.chr3_KI270935v1_alt    168432 4 +    197351 cggg
s panTro4.chr3             199805655 4 + 202329955 cggg
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120922746 4 + 123690457 cggg
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr2                106317 4 - 187378091 cggt
i papAnu2.chr2             C 0 C 0
e rheMac3.chrUn_JH291127       77899 8 +    111706 I
e mm10.chr16                65461757 2469 -  98207768 I
e canFam3.chr33             29095887 5911 +  31377067 I
e calJac3.chr17               962116 9856 -  74750902 I
e chlSab2.chr15               459123 166 -  91754291 I
e macFas5.chr2                110535 0 + 192460366 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=164366.000000
s hg38.chr3_KI270935v1_alt    168436 135 +    197351 cgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagattgcaccactgcactcctgcctgggtgacagagtgagactccgtctcaaaaaaa
s panTro4.chr3             199805659 135 + 202329955 tgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggtggagcttgcagtgagccgagattgcaccactgcactcccgcctgggcgacagagtgagactctgtctcaaaaaaa
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120922750 133 + 123690457 tgcctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgaacccaggaggcggagcttgcagtgagccaagatcgcaccactgcactccagcctgggtgac--agtgagactccgtctccaaaaaa
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       77907 133 +    111706 cgcctgtggtcccagcgactcgggaggctgaggcaggagaacggcgtgaactcagaaggcggagcttgcagtgagcc-agatcgcgccactacactccag-ctgggtgacagagtgagactccgtctcaaaaaaa
i rheMac3.chrUn_JH291127   I 8 I 37
s macFas5.chr2                110535 133 + 192460366 cgcctgtggtcccagcgactcgggaggctgaggcaggagaacggcgtgaactcggaaggcggagcttgcagtgagcc-agatcgcgccactgcactccag-ctgggtgacagagtgagactccgtctcaaaaaaa
i macFas5.chr2             C 0 I 2
s papAnu2.chr2                106321 133 - 187378091 cgcctgtggtcccagcgactcgggaggctgaggcaggagaacggtgtgaactcggaaggcggagcttgcagtgagcc-agatcgcgccactgcactccag-ctgggtgacagagtgagactccgtctcaaaaaaa
i papAnu2.chr2             C 0 I 2
e mm10.chr16                65461757 2469 -  98207768 I
e canFam3.chr33             29095887 5911 +  31377067 I
e calJac3.chr17               962116 9856 -  74750902 I
e chlSab2.chr15               459123 166 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=4838.000000
s hg38.chr3_KI270935v1_alt    168571 18 +    197351 aaa------ttaaaaattaaaaaa
s panTro4.chr3             199805794 24 + 202329955 aaaaaaaaattaaaaattaaaaaa
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120922883 19 + 123690457 aaa-----attaaaaattaaaaaa
i nomLeu3.chr11            C 0 C 0
s macFas5.chr2                110670 18 + 192460366 ------aaaataaaaacagaaaca
i macFas5.chr2             I 2 I 19
s papAnu2.chr2                106456 18 - 187378091 ------aaaacaaaaccagaaaca
i papAnu2.chr2             I 2 I 71
e rheMac3.chrUn_JH291127       78040 37 +    111706 I
e mm10.chr16                65461757 2469 -  98207768 I
e canFam3.chr33             29095887 5911 +  31377067 I
e calJac3.chr17               962116 9856 -  74750902 I
e chlSab2.chr15               459123 166 -  91754291 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=882617.000000
s hg38.chr3_KI270935v1_alt    168589 521 +    197351 tatatatgtatagtttaacttattcagtatacataattttgtatcctgcctttttagccatacctgatatgagcatttcttcaagatactagcttcgtaaacatAGCCTGAGAAGACGCACATCTTTTATGTCTTGGATGGCAGTTCCTTGCTTCCCCCTTTTGGAGTCCTACAAGAGCTGGCTCAGGGGGACTGGGAGAGCTCAGCTCCATAGTAAAATCTAGGGTGCTGTATAAAAACTCCCCCTGCTGAGCTCTGGTGGCCTCCTTCCTAACAAAGCCACTCCCCCAACTGGAAGCGTTGTTACCCTTCCCATTTTCTGTTAAACAGGAGCAGGTCTCTCTCCTGTACCACATCCTGCTGTGTGTCCACCATACCCACCTCTCTGTGCAATGAGAGCTCGGGGGTCATGTGGACTCCACTGCTCCCTGCTCGCAATTTCTCCTTAATACATCTTACTTTATGCCCGTTC--------TGTGTGTTGCTAGTATGTATGTGTGACACtgtg-----------tgtgtgtgtgtgtg----tg
s panTro4.chr3             199805818 525 + 202329955 tatatacgtatagtttaacttattctgtatacataattttgtatcctgcctttttagccatacctgatatgagcatttcttcaagatactagcttcataaacatAGCCTGAGAAGACGCACATCTTTTATGTCTTGGATGGCAGTTCCTTGCTTCCCCCTTTTGGAGTCCTACAAGAGCTGGCTCAGGGGGACTGGGAGAGCTCAGCTCCATAGTAAAATCTAGGGTGCTGTATAAAAACTCCCCCTGCTGAGCTCTGGTGGCCTCCTTCCTAACAAAGCCACTCCCCCAACTGGAAGGGTTGTTACCCTTCCCATTTTCTGTTAAACAGGAGCAGGTCTCTCTCCTGTACCACATCCTGCTGTGTGTCCACCGTACCCACCTCTCTGTGCAATGAGAGCTCGGGGGTCATGTGGACTCCACTGCTCCCTGCTCACAATTTCTCCTTAATACATCTTACTTTATGCCCGTTC--------TGTGTGTTGCTAGTATGTATGTGTGACACtgtg-----------tgtgtgtgtgtgtgacactg
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120922902 504 + 123690457 -atacatatatagtgtaacttattcagtatacgtaattttatatcctgcctttttagccatacctgatatgagcatttcttcaagatactagcttcataaacatAGCCTGAGAAGAGGCACATCTTTTATGTCTTGGATGGCAGTTCCTTGCTTCCCTCTTTTGGAGTCCTACAAGAGCTGGCTCAGGGGGACTGGGAGTGCTCAGCTCCACAGTAAAATCTAGGGTGCTGTATAAAAACT--CCCTGCTGAGCTCTGGTGGCCTCCTTCCTAACAAAGCCACTCCCCCAACTGGAAGCATTGTTACCCTTCCCATTTTCCGTTAAACAGGAGCAGGTCTCTCTCCTGGACCATATCCTGCTGTGTGTCCACCGTACCCACCTCTCTGTGTGATGAGAGCTTGGGGGTCATGTGGACTCCACTGCTCCCTGCTCGCAATTTCTCCTTAATATGTCTTACTTTATGCCCATTC----------TGTGTTGCTAGTATGTATGTGCGACACtgtg-----------tgtg----------------
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       78077 523 +    111706 TATATATATATAGTTTAACTTATTCAGTATACATAATTTTGTGTCCTGCCTTTTTAGCCATACCTGATATGAGCATTTCTTCAAGATACTAGCTTTGTAAACATAGCCCGAGAAGAGGCACATCTTTTATGTCTCGGATGGCAGTTCCTTGCTTCCCCGTTTTGGAGTCCTACAAGAGCTGGCTCAGGGGG-CTGGGAGAGCTCCGCTCCGCAGGAAAATCTAGGGTGCTGTATAAAACTC--CCCCGCTGAGCTCTGGTGGCTTCCTTCCTAACAAAGCCACTTCCCC-ACTGGAAGCGCTGTTACCATTCCCATTTCCCCTTCAACAGGCGCAGGTCTCTCTCCTGGACCACATCCTGCTGTGTGTCCACCGTACCCACCTCTCTGTGCGATGAGAGCTCAGAGGCCACGTGGACTCCACCGCCTCCTGCTCGCAATGTCTCCTTAACACATCTTACTTTATGCCCGTTCtgtgtgtttgtgtgttgct--tatgtatgtgtgacactgtg-----------tgtgtgtgtgtgtc----tg
i rheMac3.chrUn_JH291127   I 37 C 0
s macFas5.chr2                110707 523 + 192460366 TATATATATATAGTTTAACTTATTCAGTATACATAATTTTGTGTCCTGCCTTTTTAGCCATACCTGATATGAGCATTTCTTCAAGATACTAGCTTTGTAAACATAGCCCGAGAAGAGGCACATCTTTTATGTCTCGGATGGCAGTTCCTTGCTTCCCCGTTTTGGAGTCCTACAAGAGCTGGCTCAGGGGG-CTGGGAGAGCTCCGCTCCGCAGGAAAATCTAGGGTGCTGTGTAAAACTC--CCCCGCTGAGCTCTGGTGGCTTCCTTCCTAACAAAGCCACTTCCCC-ACTGGAAGCGCTGTTACCATTCCCATTTCCCCTTCAACAGGCGCAGGTCTCTCTCCTGGACCACATCCTGCTGTGTGTCCACCGTACCCACCTCTCTGTGCGATGAGAGCTCAGAGGCCACGTGGACTCCACCGCCTCCTGCTCGCAATGTCTCCTTAACACATCTTACTTTATGCCCGTTCTTTGTGTTTGTGTGTTGCT--TATGTATGTGTGACACtgtg-----------tgtgtgtgtgtgtc----tg
i macFas5.chr2             I 19 C 0
s papAnu2.chr2                106545 527 - 187378091 tgtgtatatatagtttaaCTTATTCAGTATACATAATTTTGTGTCCTGCCTTTTTAGCCGTACCTGATATGAGCATTTCTTCAAGATACTAGCTTTGTAAACATAGCCCGAGAAGAGGCACATCTTTTATGTCTCGGATGGCAGTTCCTTGCTTCCCCCTTTTGGAGTCCTACAAGAGCTGGCTCAGGGGG-CTGGGAGAGCTCAGCTCCGCAGTAAAATCTAGGGTGCTGTATAAAACTC--CCCCGCTGAGCTCTGGTGGCTTCCTTCCTAACAAAGCCACTTCCCC-ACTGGAAGCGCTGTTACCATTCCCATTTCCCCTTCAACAGGCGCAGGTCTCTCTCCTGGACCACATCCTGCTGTGTGTCCACCGTACCCACCTCTCTGTGCGATGAGGGCTCAGAGGCCACGTGGACTCCACCGCCTCCTGCTCGCAATGTCTCCTTAACACATCTTACTTTATGCCcgttctgtgtgtttgtgtgttgct--tatgtatgtgtgacactgtg-----------tgtgtgtgtgtgacactgtg
i papAnu2.chr2             I 71 I 246
s chlSab2.chr15               459289 527 -  91754291 tatATATATATAGTTTAACTTATTCAGTATACATAATTTTGTGTCCTGCCTTTTTAGCTATACCTGATATGAGCATTTCTTCAAGATACTAGCTTTGTAAACATAGCCCGAGAAGAGGCACATCTTTTATGTCTTGGATCGCAGTTCCTTGCTTCCCCCTTTTGGAGTCCTACAAGAGCTGGCTCAGGGGG-CTGGGAGAGCTCAGCTCCGCAGTAAAATCTAGGGTGCTGTATAAAACTC--CCCTGCTGAGCTCTGGTGGCTTCCTTCCTAACGAAGCCATTTCCCC-ACTGGAAGTGCTGTTACCATTCCCATTTCCCCTTCAACAGGCGCAGGTCTCTCTCCTGGACCACATCCTGCTGTGTGTCCACCGTACCCACCTCTCTGTGCGATGAGA---------CCACGTGGACTCCACCGCTTCCTGCTCGCAACATCTCCTTAACACATCTTCCTTTATGCCCGTTCtgtgtgtttgtgtgttgctagtatgtatgtgtgacactgtgttgtgtgacactgtgtgtgtgtgtc----tg
i chlSab2.chr15            I 166 C 0
e mm10.chr16                65461757 2469 -  98207768 I
e canFam3.chr33             29095887 5911 +  31377067 I
e calJac3.chr17               962116 9856 -  74750902 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=22477.000000
s hg38.chr3_KI270935v1_alt    169110 20 +    197351 tgtgtgtgtgACACTGTGTG
s panTro4.chr3             199806343 14 + 202329955 tgtgtgtgtg------tgtg
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120923406  4 + 123690457 ----------------tgtg
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       78600 20 +    111706 tgtgtgtgtgacactgtgtg
i rheMac3.chrUn_JH291127   C 0 I 704
s macFas5.chr2                111230 20 + 192460366 tgtgtgtgtgacactgtgtg
i macFas5.chr2             C 0 I 379
s papAnu2.chr2                107318 20 - 187378091 tgtgtgtgtgacactgtgtg
i papAnu2.chr2             I 246 I 16
s chlSab2.chr15               459816 20 -  91754291 tgtgtgtgtgacactgtgtg
i chlSab2.chr15            C 0 I 134
e mm10.chr16                65461757 2469 -  98207768 I
e canFam3.chr33             29095887 5911 +  31377067 I
e calJac3.chr17               962116 9856 -  74750902 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=995578.000000
s hg38.chr3_KI270935v1_alt    169130 559 +    197351 TGTGTGTCCCTGCCCTTATGGAACATTGGACATAGCCTTTAAACAtttttttttccagatggagtttcactcttgttgcccaggctggagtgcaacggcacgatttcggcccactgcaacctccacctccgtgattctcctgcttcagcctcccaagtagctgggattacaggcatgtgccaccatgccaggctaattttttgtatttttagtggagactgggtttcaccatgttggccaggctggtctcaaactcttgacctcaggtgatccactcacctcagcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggccTAAACACTAAATAATAAGCCATCATAGAGAAAGCTCATATTGTTAActtactgttggacaattaggatatttccaatgtattgcttattttaaataaagccctgatgactatctttgtgtctaatgttttgtttacattatttcagctcatctccttaacataaatttctatcagtggaattgctggtttatgctgttataaaatttttcatgttattaatacag----actg
s panTro4.chr3             199806357 559 + 202329955 tgtgtgtCCCTGCCCTTATGGAACATTGGACATAGCCTTTAAACAtttttttttccagatggagtttcactcttgttgcccaggctggagtgcaacggcacgatttcggcccactgcaacctccgcctccgtgattctcctgcttcagcctcccaagtagctgggattacaggcatgtgccaccatgccaggctaattttttgtatttttactggagactgggtttcaccatgttggccaggctggtctcaaactcttgacctcaggtgatccactcacctcaacctcccaaagtgctgggattacaggcgtgagccaccgcacctggccTAAACACTAAATAATAAGCCATCATAGAGAAAGCTCATATTGTTAActtattgttagacaattagggtatttccaatgtattgcttattttaaataaagccctgatgactatcttcgtgtatgatgttttgtttacattatttcagctcatctccttaacataaatttctatcagtggaattgctggtttatgctgttataaaatttttcatgttattaatacag----actg
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120923410 558 + 123690457 tgtgtgtCCCTTCCCTTATGGAACACTGGACATAGCCTTTAAACAtttttttttccagatggagtttcgctcttcttgcctaggctggagtgcaacggcatgatttcggcccactgcaacctccgccttggtgattctcctgcctcagcctcccaagtagctgggattacaggcatgtgccaccacgccaggctaattttttgtatatttagtagagactgggtttcaccatgttggccaggctggtctcaaactcttgacctcaggtgatccactcaccttggcctcccaaagtgctgggattacaggcgtgagcctccgcgcccagccTAAACActaaataataagccatcatagagaaagctcatattgttaacttactgttggacaatcaggatatttccaatgtattgcttattttaaataaagcgctgatgactatcttcgtg-ataacgttttgtttacattatttcagctcacctccttaacataaatttctatcagtggaattactgattaatgctgttataaaatttttcatgttattaatacag----actg
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       79324 562 +    111706 tgtgtgtccatgcccttatggaatAGTGGACATAGCCTTTAAACA-ttttttttccagatggagtttcgctcttgttgcccaggctggagtgcaatggcatgatttcggctcactgcaaactccacctccgtgattctcctgcctcagcctcccaagtagctgagattacaggtgtgtgccaccatgccacgctaaatttttgtatttttagtagagactgggtttcaccatgttggccaggctggtctgaaattcttgacctcaggtgatccgctcacctcagcctcccaaagtgctgggagtacaggtgtgagccaccgcacttggccTAAACATTAaataataaatcatcgtagaaaaagctcatattgttaacttactgttggacatttagaatgtttccaatgtattgcttattttaaataaagccctgatgactaacttcgtgtataatgtttcgtttacattatttcagctcatctccttaacttaaatttctatcactggaattactggttaatgctgctataaaatttttcatgttattaatacagaaatactg
i rheMac3.chrUn_JH291127   I 704 C 0
s macFas5.chr2                111629 562 + 192460366 tgtgtgtcCATGCCCTTATGGAATAGTGGACATAGCCTTTAAACA-ttttttttccagatggagtttcgctcttgttgcccaagctggagtgcaatggcatgatttcggctcactgcaaactccacctccgtgattctcctgcctcagcctcccaagtagctgagattacaggtgtgcgccaccatgccacgctaaatttttgtatttttagtagagactgggtttcaccatgttggccaggctggtctcaaactcttgacctcaggtgatctgctcacctcagcctcccaaagtgctgggagtacaggtgtgagccaccgcactcggccTAAACATTAaataataaatcatcgtagaaaaagctcatattgttaacttactgttggacatttagaatgtttccaatgtattgcttattttaaataaagccctgatgactatcttcgtgtataatgtttcgtttacattatttcagctcatctccttaacttaaatttctatcactggaattactggttaatgctgctataaaatttttcatgttattaatacagaaatactg
i macFas5.chr2             I 379 C 0
s papAnu2.chr2                107354 562 - 187378091 tgtgtgtccatgCCCTTATGGAATAGTGGACATagcctttaaaca-ttttttttccagatggagtttcgctcttgttgcccaggctggagtgcaatgacatgatttcggctcactgcaaactccacctccgtgattctcctgcctcagcctcccaagtagctgagactacaggtacgcgccaccatgccaggctaaatttttgtattttcagtagagactgggtttcaccatgttggccaggctggtctcaaactcttgacctcaggtgatccgctcacctcagcctcccagagtgctgggagtagaggtgtgagccaccgcacccggcctaaacattaaataataaatcatcGTAGAAAAAGCTCATATTGTTAACTTACTGTTGGACATTTAGAATGTTTCCAATGTATTGCTTATCTTAAATAAAGCCCTGATGACTATCTTCGTGTATAATGTTTCGTTTACATTATTTCAGCTCATCTCCTTAACTTAAATTTCTATCACTGGAATTACTGGTTAATGCTGttataaaatttttcatgttattaatacaaaaatactg
i papAnu2.chr2             I 16 C 0
s chlSab2.chr15               459970 563 -  91754291 tgtgtgtccattcccttacggaATATTGGACATAGCCTTTAAACAtttttttttccagatggagtttcgctcttgttgcccaggctggagtgcaatgacatgatttcggctcactgcaaactccacctccgtgattctcctgcctcagcctcccaagtagctgagattacaggtgtgtgccaccatgccaggctaaatttttgtatttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcttgacctcagatgatccgctcacctcagcctcccaaagtgctgggattacaggtgtgagccaccgcacccgtccTAAACATTAAATAATAAATCATCGTAGAAAAAGCTCATATTGTTAActtactgttggacatttagaatgtttccaatgtattgcttattttaaataaagccctgatgactatcttcgtgtataatgtttcgtttacattatttcagctcatctccttaacttaaatttctatcactggaattactggttaatgctgttataaaatttttcatgttattaatacagaaatactg
i chlSab2.chr15            I 134 C 0
e mm10.chr16                65461757 2469 -  98207768 I
e canFam3.chr33             29095887 5911 +  31377067 I
e calJac3.chr17               962116 9856 -  74750902 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=377667.000000
s hg38.chr3_KI270935v1_alt    169689 163 +    197351 ccaaatttctttgcagaaagcttatgccaatttacagacctgttggcagtgtgcaagagtgtgcctgtttccccatatccctagccTGTGAACAAAGGGGCATGATCCAGGACAGGCCCCATCCCTCACCTGCTGCTCTTTGCTTCACAGCATCGACTGAAAA
s panTro4.chr3             199806916 163 + 202329955 ccaaatttctttgcagaaagcttatgccaatttacagacctgttggcagtgtgcaagagcgtgcctgtttccccatatccctagccTGTGAACAAAGGGGCATGATCCAGGACAGGCCCCATCCCTCACCTGCTGCTCTTTGCTTCACAGCATCGACTGAAAA
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120923968 163 + 123690457 ccaaatttctttgcagaaagcttgtgccaatttacagacctgttggcagtgtgcaagagcgtgcctgtttccccatatccctggccTGTGAACAAAGGGGCATGATCCAGGACAGGCCTCATCCCTCACCTGCTGCTCTTTGCTTCACAGCATCGACTGAAAA
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       79886 162 +    111706 ccaaatttctttgcagaaagcttgtgccaatttacagacctgttggcagcgtgcaagagtgtgcctgtttccccatatccc-ggccTGTGAACAAAGGGGCACGATCCAGGACAGGCCCCATCCTTCACCTGCTGCTCTTTGCTTCATAGCATTGATTGAAAA
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                112191 162 + 192460366 ccaaatttctttgcagaaagcttgtgccaatttacagacctgttggcagtgtgcaagaatgtgcctgtttccccatatccc-ggccTGTGAACAAAGGGGCACGATCCAGGACAGGCCCCATCCTTCACCTGCTGCTCTTTGCTTCATAGCATTGATTGAAAA
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                107916 162 - 187378091 CCAAATTTCtttgcagaaagcttctgtcAATTTACAGACCTGTTGGCAGTGTGCAAGagtgtgcctgtttcctcatatCCC-GGCCTGTGAACAAAGGGGCACGATCCAGGACAGGCCCCATCCCTCACCTGCTGCTCTTTGCTTCATAGCATCAATTGAaaa
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               460533 162 -  91754291 ccaaatttctttgcagaaagcttgtgccaatttacagacctgttggcagtgtgcaagagtgtgcctgtttccccatttccc-agccTGTGAACAAAGGGGCACGATCCAGGACAGGCCCCATCCCTCACCTGCTGCTCTTTGCTTCGTAGCATCGATTGAAAA
i chlSab2.chr15            C 0 C 0
s calJac3.chr17             73779080 163 +  74750902 ctaaatttcattgcagaaagattgtaccaatgtacagacctgctggcagagtgcaaggccgtgcctgttgccccgtatccccTGTCTGTGCACAAAGGGGCATGATCCAGGACAGGCCCCAGCCCTGCGCTGCTGCTCTTTGCTTTGTAGCACCAACTGAAAA
i calJac3.chr17            n 9856 C 0
e mm10.chr16                65461757 2469 -  98207768 I
e canFam3.chr33             29095887 5911 +  31377067 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=520843.000000
s hg38.chr3_KI270935v1_alt    169852 299 +    197351 TCggccaggtgcggtgcctcacacctgtaatcccagcactttgggaggtcgaagcgggtggatcatttgaggtcaggagttcaagaccagcctggccaacatgatgaaaccccatctctactaaaaatacaaaaattacccaggcatggtggcgtgcacctgtaatcccagctactcaggaggctgaggcaggagaatctctcaaacctgggaggtggaggttgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagcgggactccatctcaaa---------aaaaaaaaaaaT---------------
s panTro4.chr3             199807079 299 + 202329955 TCggccaggtgaggtgcctcacacctgtaatcccagcagtttgggaggtcgaagtgggtggatcatttgaggtcaggagttcaagaccagcctggccaacatgatgaaaccccatctctactaaaaatacaaaaattaaccaggcatggtggtgtgcacctgtaatcccagctactcaggaggctgaggcaggagaatctctcaaacctgggaggtggaggttgcagtgagccgagatcgcgccactgcacttcagcctgggcgacagagcgggactccatctcaaa---------aaaaaaaaaaGT---------------
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120924131 302 + 123690457 TCggccgggtgcagtgcctcacacctgtaatcccagcactttgggaggtcgaggcgggtggatcatttgaggtcaggagttcaagaccagcctggccaacatgatgaaaccccatctctactaaaaatacaaaaattacccaggca--atgg-gtgcacctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacctgggaggtggaggttgcagtgagccgagatcatgccactgcactccagcctgggcgacagagcgggactccatctcaaa---------aaaaaaaaaaaaaa---------aaaG
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       80048 314 +    111706 TCggccaggtgcagtgtctcacacctgtaatcccagcactttgggaggtcgaggcaggtggatcatttgaggtcaggagttcacgaccagcctggccaacatgatgaaaccccatctctactaaaaatacaaaaattagcagggggtggtggcgagtgcctgtaatcccagctacccgggaggctgaggcaggagaattgcttgaacccaggaagcggaggttgcagtgagctgagatcgtgccattgcgctccagcctgggcgacagagcgggactccatctcagg---------aaaaaaaaaaaaaagaaagaaagaaaa
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                112353 314 + 192460366 TCggccaggtgcagtggctcacacctgtaatcccagcactttgggaggtcgaggcaggtggatcatttgaggtcaggagttcacgaccagcctggccaacatgatgaaaccccatctctactaaaaatacaaaaattagcagggggtggtggcaggtgcctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaacccaggaagcggaggttgcagtgagccgagatcgtgccattgcgctccagcctgggcgacagagcgggactccatctcagg---------aaaaaaaaaaaaaagaaagaaagaaaa
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                108078 323 - 187378091 tcggccaggtgcagtggctcacacctgtaatcccagcactttgggaggtcgaggcgggtggatcatttgaggtcaggagttcacgaccagcctggccaacatgatgaaaccccatctctactaaaaatacaaaaattagcagggggtggtggcaggtgcctgtaattccagctactcgggaggctgaggcaggagaattgcttgaacctgggaagcagaggttgcagtgagccgagatcgtgccattgcgctccagcctgggtgacagagcaggactccatctcaggaaaaaaaaaaaaaaaaaaaaaaagaaagaaagaaaa
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               460695 315 -  91754291 TCggccaggtgcagtggctcacacctgtaattccagcacttcgggaggtcgaggcgggtggatcatttgaggtcaggagttcacgaccagcctggccaacatgatgaaaccccatctctactaaaaatacaaaaattagcagggggtggtggcaggtgcctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaacccgggaagcggaggttgcagtgagccgagatcgtgccattgtgctccagcctgggcgacagagcaggactccatctcagg--------aaaaaaaaaaagaaagaaagaaagaaaA
i chlSab2.chr15            C 0 C 0
e mm10.chr16                65461757 2469 -  98207768 I
e canFam3.chr33             29095887 5911 +  31377067 I
e calJac3.chr17             73779243   0 +  74750902 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=893201.000000
s hg38.chr3_KI270935v1_alt    170151 398 +    197351 TCTTGCTaaacagggctgtgtcctggtagtcctccttttaaatctttatttagagaacttgctcatcttgagccaagttgattag-agtttcctgctgccgcaaataggagggcaagtgagtcactgcatgtggaggacatagttttattgtctaggggagaaggcgctgtcaaaatctctcaatctgttgggcttgtgaggaggaagagattagcattcgttacgac-aaaactacagttattgcatttgtttttcaccatcatttaaacaatacctctgaagccactcctgcaatagattgattattcagctgtttaggaaaacaatttgcagataactcaatctACTAAGCTTGAGTAGGTTATTTGTAGGTAAGAAATCCTGTGTTCAAGTATGAC
s panTro4.chr3             199807378 397 + 202329955 -CTTGCTaaacagggctgtgtcctggtagtcctccttttaaatctttatttagagaacttgctcatcttgagccaagttgattag-agtttcctgctgccgcaaataggagggcaagtgagtcactgcatgtggaggacatagttttattgtctaggggagaaggcgctgtcaaaatctctcaatctgttgggcttgtgaggaggaagagattagcgttcattacgac-aaaactacagttattgcatttgtctttcaccatcatttaaacaatacctctgaagccactcctgcaatagattgattattcagctgtttaggaaaacaatttgcagataactcaatctACTAAGCTTGAGTAGGTTATTTGTAGGTAAGAAATCCTGTGTTCAAGTATGAC
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120924433 396 + 123690457 TCTTGCTaaacagggctgtgtcctggtagtcctccttttaaatctttatttagagaacttgctcatcttgagccgagttgattag-agtttcctgctgccacaaataggagggcaagtgagtcattgtatgtggaggacatagttttattgtctaggggagaaggcgctgtcaaaatctctcaatctgttgggcttgtgaggaggaagagattagcattcattacgac-aaaact--aGTTATTGCATTTGTCTTTCACCATCATTTAAACAATACATCTGAAGCCACTCCTGCAATAGATTGATTATTCAGCTATTTAGGAAAACAGTTTTCAGATAACTCAATCTACTAAGCTTGAGTAGGTTATTCATAGGTAAGAAATCCTGTGTTCAAGTATGAC
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       80362 394 +    111706 TCTTGCTaaacaaggctgtgtcctgatagtcctcgttttacatctttatttagagaacctgctcatcttgagctgagttgattag-agtttcctgctgccgcaaacaggaggacaggtgagtcactgcatgcggaggacatagttttattgtctaggggagaaggcgctgtcaaaatctctcagtctgttgggcttgtgaggaggaagagatgagcattcgttacgacaaaaaccacagttaccgcatttgtctttcaccgtcgtttaaaca-----tctgaagccactcctgccacagattgattattcagctatttaggaaagcagtttgcaggtaactcaatctACTAAACCTGAGTAGGTTATTTGTAGGTAAGAAATTCTGTGTTCAAGTATGAC
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                112667 394 + 192460366 TCTTGCTaaacaaggctgtgtcctgatagtcctcgttttacatctttatttagagaacctgctcatcttgagctgagttgattag-agtttcctgctgccgcaaacaggaggacaggtgagtcactgcatgcggaggacatagttttattgtctaggggagaaggcgctgtcaaaatctctcagtctgttgggcttgtgaggaggaagagatgagcattcgttacgacaaaaaccacagttaccgcatttgtctttcaccgtcgtttaaaca-----tctgaagccactcctgccacagattgattattcagctatttaggaaagcagtttgcaggtaactcaatctACTAAACCTGAGTAGGTTATTTGTAGGTAAGAAATTCTGTGTTCAAGTATGAC
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                108401 391 - 187378091 tcttgctAAACAAGGCCGTGTCCTGATAGTCCTCGTTTTACATCTTTATTTAGAGAACCTGCTCATCTTGAGCTGAGTTGATTAG-AGTTTCCTGCTGCCGCAAACAGGAGGACAGGTGAGTCACTGCATGCGGAGGACATAGTTTTATTGTCTAGGGGAGAAGGCGCTGTCAAAATCTCT--GTCTGTTGGGCTTGTGAGGAGGAAGAGATGAGCATTCgttatgac-aaaaccacagttACTGCATTTGTCTTTCACCGTCGTTTAAACA-----TCTGAAGCCACTCCTGCCACAGATTGATTATTCAGCTATTTAGGAAAGCAGTTTGCAGGTAACTCAATCTACTAAACCTGAGTAGGTTATTTGTAGGCAAGAAATTCTGTGTTCAAGTATgac
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               461010 391 -  91754291 TCTTGCTaaacaaggctgtgtcctgatagtcctcgttttgcatctttatttagagaacctgctcatcttgagctgagttgatt---agtttcctgctgcggcaaacaggaggacaggtgagtcactgcctgcggaggacatagttttattgtctaggggagaaggcgctgtcaaaatctctcagtctgttgagcttgtgaggaggaagagatgagcattcgttacgac-aaaaccacagttactgtatttgtctttcaccgttgtttaaaca-----tctgaagccactcctgccacagattgattattcagctatttaggaaagcagtttgcaggtaactcaatctACTAAACCTGAGTAGGTTATTTGTAGGTAAGAAATTCTGTGTTCAAGTATGAC
i chlSab2.chr15            C 0 C 0
s calJac3.chr17             73779243 397 +  74750902 CCTTGCTaaacacggctgtgtcctggtagtcctccttttaaatctttatttagagaacttgctcatcttgagccgagttgatgaacagtttcctgctgcctggaataggagggcaagagagtcacttcatgtggaggacataggtttattgtctagggaagaaggcacagtcaaaatctctcaatgtgttgggcttgtgagaaggaagagattagtgttcatgacgac--aaactacggttactgcatttgtctttcaccat-atttaaacagtagaccttaagctgctcctccaacggattcatcattcagctatttaggaaaacagtttgcagataactcaatctACTAAACTTGAGTAGGTTATTCCTAGGTAAGAAACAATGTGTTCAAGTATGAC
i calJac3.chr17            C 0 n 0
e mm10.chr16                65461757 2469 -  98207768 I
e canFam3.chr33             29095887 5911 +  31377067 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=6696.000000
s hg38.chr3_KI270935v1_alt    170549 10 +    197351 CTATCTTT--------------AC
s panTro4.chr3             199807775 10 + 202329955 CTATCTTT--------------AC
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120924829 10 + 123690457 CTACCTTT--------------AA
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       80756 14 +    111706 CTATCTTT----------AAAAAA
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                113061 15 + 192460366 CTATCTTT---------aaaaaaa
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                108792 19 - 187378091 ctatcttt-----aaaaaaaaaaa
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               461401 24 -  91754291 CTATCTGTaaaaaaaaaaaaaaag
i chlSab2.chr15            C 0 C 0
e mm10.chr16                65461757 2469 -  98207768 I
e canFam3.chr33             29095887 5911 +  31377067 I
e calJac3.chr17             73779640  0 +  74750902 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=401569.000000
s hg38.chr3_KI270935v1_alt    170559 245 +    197351 AAAGAAG-AAAAAGAAAGAAATCCTAGTGGATGGAGAGACTATGGAGAATGATTTTTGGTAAGAAAATGGTTCTCAgctgggcatggtagctcatgcctaaaatcccagcacggacaggcagaggcgggaggattccttgaggccaggagtttgagaccagcctgggcaatagctcaagaccccttctctgaa-aaaa-----aaaaaaaaaAA--AAAAGTGGTTCTCAAAAGGCAGAGGGTGCatcagcatt
s panTro4.chr3             199807785 240 + 202329955 AAAGAAG-AAAAAGAAAGAAATCCTAGTGGATGGAGAGACTATGGAGAATGATTTTTGGTAAGAAAATGGTTCTCAgctgggcatggtagctcatgcctaaaatcccagcacggacaggcagaggcgggaggattccttgaggccaggagtttgagaccagcctgggcaatagctcaagaccccttctctgaa-aaaa-----aaaaaaaaaA-------GTGGTTCTCAAAAGGCAGAGGGTGCatcagcatt
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120924839 243 + 123690457 AAAAAAGAAAAAAGAAAGAAGTCCTAGTGGATGGAGAGACTATGGAGAATGATTTTTGGTAAGAAAATGGTGCTCAgctgggcatggtagctcatgcctaaaatcccagcacggacaggtggaggcgggaggatagcttgaggccaggagtttgagaccagcctgggcaatagagcaagaccccttctctgaa-aaaa-----aaaaaaaaaA---AAAAGTGGTTCTCAAAAGGC--AGGGTGCATCAAcatt
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       80770 236 +    111706 AAAAAAAAGAAAAGAGAGAAATCCTAGTGGACGGAGAGACTATGGAGAGTTACTTTTGGTAAGAAAACGGTTCTCAgctggacatggtagcgcacacctaaaatcccagcatggacagtctgaggtgggaggattgcttcaggccaggagtttgagaccagcctgg--------gcaagaccccttctctgaa-aaaa-----aaaaaaaaaAA--AAGAGTGGTTCTCCAAAAGC--AGGGTGCCTCAgcatt
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                113076 244 + 192460366 aaaaaaaagaaaagagagaaaTCCTAGTGGACGGAGAGACTATGGAGAGTTACTTTTGGTAAGAAAACGGTTCTCAgctggacatggtagcgcacacctaaaatcccagcatggacagtctgaggtgggaggattgcttcaggccaggagtttgagaccagcctgggcaataa-gcaagaccccttctctgaagaaaa-----aaaaaaaaAAA--AAGAGTGGTTCTCCAAAAGC--AGGGTGCCTCAgcatt
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                108811 249 - 187378091 aaagaaaagagaagagagaaatccTAGTGGACAGAGGGACTATGGGGAGTTACTTTTGGTAAGAAAACGgttctcagctgggcatggtagcgcacacctaaaatcccagcatggacagtctgaggtgggaggattgcttcaggccaggagtttgagaccagcctgggcaataa-gcaagaccctttctctgaaaaaaataaataaataaataaa--aagagtggTTCTCCAAAAGC--AGGGTGCCTCAGCATT
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               461425 149 -  91754291 aaagaaaagaaaagagagaaaTCCTAGTGGACGGAGAGACTATGGAGAGTTACTTTTGGTGAGAAAACGGTTCTCAGCTGGGCATGGTAGCGTACACCTAAAATCCCAGCATGGAC-------------------------------------------------------------------------------------------------------AGTGGTTCTCCAAAAGC--AGGGTGCCTCAgcatt
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               971972 232 -  74750902 aaagaaa-agaaagaaagaaATTCTAGTGGGTGGAGAGAACATAGCGAATGATTTTTGGTAAGAAAGTGGTTCTCAgcggggcatggtagctcacgcctataatcccagcactgacaggcggaggttggaggatggcttgaggccaggaatttgagaccagcctgggaaatag--------------cctgga-aaaa---ataaataaaTAAAATAAAAGTGGTTCTCAAAAGAT--AGGGTGCA-CAgcatt
i calJac3.chr17            I 9856 C 0
e mm10.chr16                65461757 2469 -  98207768 I
e canFam3.chr33             29095887 5911 +  31377067 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=1197931.000000
s hg38.chr3_KI270935v1_alt    170804 470 +    197351 ttaacacatgtccagagtgattctgatgcaggtggtccgtggaccccacgttcagaaacactTCCCTTAAAATAAAATGATAGTATCCACTCTTAACAA-----TGTTTGTAAGCCAAAACCATCTCGCTGAAGTTGTCAGGCAGAGAAATTTGAAGCCTTGATCAAGTTTTATTCTAAAAAATACTCATAGCCTTGTTCTTGCTGCTCAAGTGTTGGCCAGAATGAACTGACCTTGGCTCTCACCAGGATGCAAGTCAGGCCCTTCAGGTTCCGTCAGATTGTCAGACAACTGAAACTT---GTTCTCACTCTGGCCAAACGCAT---AAACTTGGGGAGCAGAGAGCTGGGAGATTTGCGCCTAAAGAGTTGATATTGGAGAGAAACAGGTCTCTC----------CTCTCTCTTCTCTCCCCGTGACCCTCCATTTTCTACTTCACTGAAAGAACCA---AAGCCGTGCC-CTTCATCTCCTTCAATGCCCA
s panTro4.chr3             199808025 473 + 202329955 ttaacacatgtccagagtgattctgatgtaggtggcccgtggaccccatgttcagaaacactgCCCTTAAAATAAAATGATAGTATCCACTCTTAACAA-----TGTTTGTAAGCCAAAACCATCTCACTGAAGTTATAAGGCAGAGAAATTTGAAGGCTTGATCAAGTTTTATTCTAAAAAATATTCATAGCCTTGTTCTTGCTGCTCAAATGTTGGCCAGAATGAACTGACCTTGACTCTCACCAGGATGCCAGTCAGGCCCTTCAGATTCCGTCAGATTGTCAGACAACCGAAACTTACTGTTCTCACTCTGGCCAAACGCAT---AAACTTGCGAAGCAGAGAGCTGGGAGATTTGCGCGTAAAGAGTTGATATTGGAGAGAAACAGGTCTCTC----------CTCTCTCTTCTCTCCCTGTGACGCTCCATTTTCTACTTCACTGAAAGGACCA---AAGCCGTGCC-CTTCATCTCCTTCAATGCCCA
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120925082 471 + 123690457 ttaacacacacccagagtgattctgatataggtggtccgtgga--ccacgttaagaaacactACCCTTAAAATAAAATGATAGTATCCACTATTAACAA-----TGTTCGTAAGCTAAAAGCATCTTGCTGAAGTTGTAAGGCAGAGAAATTTGAAGCCTTGATCAAGTTTTATTCTAAAAAATATTCATAGCCTTGTTCTTGCTGCTCAAATGTTGGCCAGAATGAACTGACCTTGACTCTCACCAGGATGCAAGGTAGGCCCTTCAGGTTCCATCAGATTGTCAGACAACTGAAACTTATTGTTCTCACTCTGGCCAAACGCAT---AAACTTGCGGAGCAGAGAGCTGGGAGATTTGAGCGTAAAGAGTTGATACTGGAGAGAAACAGGTTTCTC----------CTCTCTCTTCTCTCCCTGTGACACTCCATTTTCTACTTCACTGAAAGGACCA---AAGCCGTGCC-CTTCATCTCCTTCAATGCCCA
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       81006 461 +    111706 ttaacacatgcccagagtgatcctggtataggtggtccgtggaccacatgttaagaaatactgCCCTTAAAATAAAATGATAGCATCCACTTTT---AA-----TGTTTGTAAGCTAAAACCATCTTGCTGAAGTTGTAAGGCAGAGAAATTTGAAGACTTAATCAAGTTTTATTCTAAAAAATATTCATAGCCTTGTTCTTGCTGCTCAAGTGTTGGCCAGAATGAACTGACCTTGACTCTCACCAGGACGCAAGCCAGGCCCGTCAGGTTCCATCAGGCTGTCAGACAACTGAAACTTACTGTTCTCACTCTGGCCAAACGCAT---ACACTTGCAGAGCAGACAGCTGGGAGATTTGAGCGTCAAGAGTTGATATTGGAGAAAAACAGGTCTCTC-------------------CTCTCCCCATGACACTCCATTTTCTACTTCACTGAAAGGACCC---AAGCCATGCC-CTTCATCTCCTTCAATGCCCA
i rheMac3.chrUn_JH291127   C 0 I 354
s macFas5.chr2                113320 461 + 192460366 ttaacacatgcccagagtgatcctggtataggtggtccgtggaccacatgttaagaaatactgCCCTTAAAATAAAATGATAGCATCCACTTTT---AA-----TGTTTGTAAGCTAAAACCATCTTGCTGAAGTTGTAAGGCAGAGAAATTTGAAGACTTAATCAAGTTTTATTCTAAAAAATATTCATAGCCTTGTTCTTGCTGCTCAAGTGTTGGCCAGAATGAACTGACCTTGACTCTCACCAGGACGCAAGCCAGGCCCGTCAGGTTCCATCAGGCTGTCAGACAACTGAAACTTACTGTTCTCACTCTGGCCAAACGCAT---ACACTTGCAGAGCAGACAGCTGGGAGATTTGAGCGTCAAGAGTTGATACTGGAGAAAAACAGGTCTCTC-------------------CTCTCCCCATGACACTCCATTTTCTACTTCACTGAAAGGACCC---AAGCCATGCC-CTTCATCTCCTTCAATGCCCA
i macFas5.chr2             C 0 I 59
s papAnu2.chr2                109060 461 - 187378091 TTGACACATGCCCAGAGTGATCCTGGTATAGGTGGTCTGTGGACCACATGTTAAGAAATACTGcccttaaaataaaatgatagcatCCACTTTT---AA-----TGTTTGTAAGCTAAAACCATCTTGCTGAAGTTGTAAGGCAGAGAAATTTGAAGACTTAATCAagttttattctaaaaaatattcaTAGCCTTGTTCTTGCTGCTCAAGTGTTGGCCAGAATGAACTGACCTTGACTCTCACCAGGACGCAAGCCAGGCCCGTCAGGTTCCATCAGGCTGTCAGACCACTGAAACCTACTGTTCTCACTCTGGCCAAACGCAT---ACACTTGCAGAGCAGACAGCTGGGAGATTTGAGCGTCAAGAGTTGATATTGGAGAAAAACAGGTCTCTC-------------------CTCTCCCCATGACACTCCATTTTCTACTTCACTGAAAGGACCA---AAGCCATGCC-CTTCATCTCCTTCAATGCCCA
i papAnu2.chr2             C 0 I 177
s chlSab2.chr15               461574 461 -  91754291 ttaacacatgcccagagtgatcctggtataggtggtccgtggaccacatgttaagaaatactTCCCTTAAAATAAAATGATAGTATCCACTTTT---AA-----TGTTTGTAAGCTAAAACCATCTTGCTGAAGTTGTAAGGCAGAGAAATTTGAAGACTTACTCAAGTTTTATTCTAAAAAATATTCATAGCCTTGTTCTTGCTGCTCAAGTGTTGGCCAGAATGAACTGACCTTGACTCTCACCAGGACGCAAGCCAGGCCCGTCAGGTTCCATCAGGCTGTCAGACAACTGAAACTTACTGTTCTCACTCTGGCCAAACGCAT---ACACTTGCAGAGCAGACAACTGGGAGATTTGAGCGTCAAGAGTTGATATTGGAGAAAAACAGGTCTCTC-------------------CTCTCCCCATGACACTCCATTTTCTACTTTACTGAAAGGACCA---AAGCCATGCC-CTTCATCTCCTTCAATGCCCA
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               972204 456 -  74750902 ttaacacatgcccagagtgattctgatacaggtggtctatggaccacacgttaagaaacactgCCCTTAAAATAAAAtgatagtatctactcttaacaa-----tgtttgtaagctaaaatcatcttgctgaagttgtaaggcatagaaatgtggagcctcgagcaagttttattcTAAAAAGTATTCATAGCCTTGTTCTTGCTGCTCAAGTGTTGGGTAGAATGAACTGACCTTGACTTTCACCAGCATGCAAGCCAGGCCCGTCAGGTTCCATC----CGTCAGACAATGGAAACTTATTGTTCTCACTCTGGCCAAATGCTT---AAACCTGCAGAGCAGACAGCTGGGAAATTT-------AAGTGTTGGTATTGGAGAGAAACAGGTCTCTC-----------------TTCTCTCCCCATGACACTCCATTTTCTACGTCACTGAAAGGACCA---AAGCTATGCCACTTCCTCTCCTTCGATGTCCA
i calJac3.chr17            C 0 C 0
s canFam3.chr33             29101798 473 +  31377067 ttaacacatgtgctgggtggttttgatacccatgatctatggaccacattttaaggaacactgCCCTTAAAATAAAAtgatagtatctgctctt---aagatcttttttgtaagctaaaaccaccttatcgaggttgtaaggcactgaaatttggagtcttgatcaagcttgGTTCTCAGGATT-TTCCCAGCCTTATTCTTGGTGCTCAAG-GTTTGCTGGAATGAACAGATCTTGTCGTTTACGAGA--GCACTCCCAGCTCCTCAGCTCCTAGCAGATTGTTAGACAACCAAGGCCTGTCGTTCTTGCCCTGGCCAAATCCATGACATATTTGCAGAGCTGAGAGCTATG-GATTTGACTGCGAAGAGCTGATATTTGAGAGAAATGGGTTTTTCCTCTCCTCTCCTCTCCCTCCTTTCTCTACGACAATTCATCTTCTACATCACTGAAAAGACCATCTAA---------CTTGATCTACATC-----CCA
i canFam3.chr33            I 5911 C 0
e mm10.chr16                65461757 2469 -  98207768 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=2115323.000000
s hg38.chr3_KI270935v1_alt    171274  931 +    197351 GAGCCTTCTCCGC--------------ACCCTCCCCGGGGCCCCGGGGCTCC------------------------------------------------------------------------CTCCTGCCC----GGATGGCTCACTGCTCTGC--------------------------------------CTCTGTGTC--T--CCGACGTTCTTTCTGCCT-----------------------TTCTCCT------TCTCTCCTGCCTGTGAGCATGTTCAGGTGTCTGTTGGCCTAAAACAAGTCTGTCATCCGT-CTGTGTCCTCCTCGT------------------CCCTCCAGCAGCATGAAAGCCGGGCTTCCCCT-GCCGCCTCTTCTTTACCA-------------CGCACTGCTCGCTCTGCCCCCACCTCACTCACTTCGCTCAAGCCG---------TTTTCCT-CAGAGCTACCAGA------------------------ATCTCCTTC-CCAACAGCAAAAACGATTTTCTCCAGTCCTCACGCGTCTC--ATCAGTTCGGCCCCATCCATTCATTCATTCATGAATCTGACAGATGTGTATTGCGCCCCCCCCTCCACGTGCTCTCCCTGGCCGGCGGCCCCGTG----CCACC-ACCCAGCCTCACCCTCATTGAAGCTGACGGGTCCTGCTCCACCGTCCACGCTCCCGGGCCctccactccactccccttgccacctctctccc-ccgctccacgccCAGATGACAT----------------GTCTCCAGccctttccctctcctgctgcccctccctctcTGGCCACCCTGCGTCTACTCTCACGCCTTACAAATCTGTACTTCT-CCCTGACTTCCCACCCA-TATGCTGGCCTCACCCTCCCAGGGATTTCCTGCCTAGCTCATGCAATGCAACAGGTCCAGGTCAATCTTTCCTTGCAAGC-TTtcttc---cttccttctgttcatgctaacaacagtcccccagacatccagcccagaaa-gctgtgggtcc-tct-ggatttctttctcttccttgtcccctgtgtcctagtcagtactcgttgatcttcctcccaagtgttcac-cccatcgcgtcctcttgtttgctttgccacatcctccccgtcgctttgactactgc
s panTro4.chr3             199808498  931 + 202329955 GAGCCTTCTCCGC--------------ACCCTCCCCGGGGCCCTGTGGCTCC------------------------------------------------------------------------CTCCTGCCG----GGATGGCTCACTGCTCTGC--------------------------------------CTCTGTGTC--T--CCGACGTTCTTTCTGCCT-----------------------TTCTCCT------TCTCTCCTGCCTGTGAGCATGTTTAGGTGTCTGTTGGCCTAAAACAAGTCTGTCATCCGT-CTGTGTCCTCCTCGT------------------CCCTCCAGCAGCGTGAAAGCCGGGCTATCCCT-GCCGCCTCTTCTTTACCA-------------CGCACTGCTCGCTCTGCCCCCACCTCACTCACTTCGCTCAAGCCG---------TTTTCCT-CAGAGCTACCAGA------------------------ATCTCCTTC-CCAACAGCAAAAACGATTTTCTCCAGTCCTCACGCGTCTC--GTCAGTTCGGCCCCATCCATTCATTCATTCATGAATCTGACAGATGTGTATTGCGCGTCCCCCTCCACGTGCTCTCCCTGGCCGGCGGCCCCGTG----CCACC-ACCCAGCCTCACCCTCATTGAAGCTGACGGGTCGTGCTCCACCGTCCACGTTCCCGGGCCCTCCACTCCACTCCCCTTGCCACCTCTCTCCC-CCGCTCCGCGCCCAGATGACAT----------------GTCTCCAGCCCTTTCCCTCTCCTGCTGCCCCTCCCTCTCTGGCCACCCTGAGTCTACTCTCAGGCCTGACAAATCTGTACTTCT-CCCTGACTTCCCACCCA-TATGCTGGCCTCACCCTCCCAGGGATTTCCTGCCTAGCTCATGCAATGCAGCAGGTCCAGGTCAATCTGTCCTTCCAAGC-TTTCTTC---CTTCCTTCTGTTCATGCTAACAACAGTCCCCCAGACATCCAGCCCAGAAA-GCTGTGGGTCG-TCT-GGATTTCTTTCTCTTCCTTGTCCCCAGTGTCCTAGTCAGTACTCGTTGATCCTCCTCCCAAGTGTTCAC-CCCATCGCGTCCTCTTGTTTGCTTTGCCACATCCTTCCCGTCGCTTTGACTACTGC
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120925553  945 + 123690457 GAGCCTTCTCCGC--------------ACCCTCCCCAGGGCCCTGTGGCTCC------------------------------------------------------------------------CTCCTGCCC----GGATGGCTCACTGCTCTGC--------------------------------------CTCTCTGTC--T--CCGACGCTCTTTCTGCCT-----------------------TTCTCCT------TCCCTTTTGCCTGTGAGCACGTTTAGGTGTCTCTTGGCCTAAAACAAGTCTCTCATCCGT-CTGTGTCCTCATCCC----TGTCTTTTGTTTTGCCCTACAGCACCGTGAAAGCGGGGCTTCCCCT-GCCGCCTCTTCTTTACCA-------------AGCGCTGCTCGCTCTGCCCCCACCTCAGTCACTTTACTCAAGCCA---------TTTTCCT-CAGAGCTACCAGA------------------------ATCTCCTTC-CCAACCGCACAAACGATTTTCTCCAGTCCCTACGTGTCTC--CTCAGTTCAGCCCCATCCATTTATTCATTCATGAATCTGACAGATGTGTATTGTGCGCCCACCTCCCCGTGCTCTCCCTGGCCAGCGGCCCCGTG----CCACC-ACCCAGCTTCGCCCTCATTGAAGCTGACGGGTCCTGCTCCACTGTCCACGTTCCCGGGCCCTCCACTCCACTCCCCTTGCCACCTCTCTCCC-CCGCTCCGCGCCCAGATGACAC----------------GTCTCCAGCCGTTTCCCTCTCCTGCTGCCCCTCCCTCTCTGGCCACCCTGCATCTACTCTTACGCCTTACAAATCTGTGCTTCT-CCCTGACTTCCCACCCA-TATGCTGGCCTCACCCTCCCAGGGATTTCCTGCCTAGCTCATGCAATGCAATGGGTCCAGGTCAATCTTTCCTTCCAAGC-TTTCTTC---CTTCTTTCTGTTCATTCTAACAACGGTCCCCCAGACATCCATCCCAGAAA-GCTCTGGGTCC-TCT-GGATTTCTTTCTCTTCCTTGTCCCCAGGGTCCTAGTCAGTACAAGTTGCTCTTCCTCCCAAGTGTTTAC-CCCATCGCGTCCCCTTGTTTGCTTTGCCACAGCCTCCCTGTCACTCTGACTACTGC
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       81821  940 +    111706 GAGCCTTCCCCGC--------------ACCCTCCCCGGGGCCCTGTGGCTCC------------------------------------------------------------------------CTCCTGCCT----GGATGGCTCACTGCTCTGC--------------------------------------CTC--TGCC--T--CTGACGCTCTTTCTGCCT-----------------------TTCTCCT------TCTCTTTTGCCTGTGACCATGTTTAGGTGTCTCTTGGCCTAAAACAAGTCTCTCATCCGT-TTGTGTCGTCCTCAT-CCCTGTCTTTTGTTTTGCCCTCCAGCACCGTGAAGGAGGGGCGTCCCCTCGCTGCCTCTTCTTTACCA-------------CGCGCTGCTCGCCCTGCCCCCACCTCAGGCACTTGGCTCAAGCCG---------TTTTCCT-CAGAGCTACCAGA------------------------ATCTCCTTC-CCAACCGCAAGAACGATTTTCTACAGTCCCCGCGCGTCTC--GTAAATTCGGCCCCATCCATTTATTTGTTCATGAATTTGACAGATGTGTATTGAGCACCCACCTCAACGTGCTCTCCCTGGCCGGCGGCCCCGTG----CCACC-ACCCAGCCTCACCTTCATTGAAGCTGACAGGTCCTGCTCCACCGTCCACTTTCCCGGGCC-----CTCCATTCCCCTTGCCGCCTCTCTCCT-CCCCTCCAGGCCCAAATGACAT----------------GTCTCCAGCACTTTCCCTCTCCTGCTGCCCCTCCCTCTCTGGCCACCCTGCGTCTACTCTTACACCTTACAAATCTGTACTTCT-CCCTGACTTCCCACCCA-TATGCTGGCCTCACCCTCCCAGGGATTTCCTGCCTAGCTCATGCAATGCAGCAGGTCCAGGTCAATCTTTCCTTCCAAGC-TTTCTTC---CTTCCTTCTGTTCATTCTAACAACAGTCCCCTAGACATCCAGCCCAGAAA-GCTCTGGGTCC-TCT-TGATTTCTTCCTCTTCCTTGTCCCCAATGTCCTAGTCGGTACTAGCTGCTCTTCCT-CCAAGTGTTTG--CCCATCACGTCCTCTTGTTTGCTTTGCCACCTCCTCCCTGTCACTCTGACTATTGC
i rheMac3.chrUn_JH291127   I 354 C 0
s macFas5.chr2                113840  995 + 192460366 GAGCCTTCCCCGC--------------ACCCTCCCCGGGGCCCTGTGGCTCCCTCCTCCTTCAATGCCCACCAGAGCCTTC--CCCGCA-----------CCCTCCCCGGGGCCCTGTGG----CTCCTGCCT----GGGTGGCTCActgctctgc--------------------------------------ctc--tgcc--t--ctgacgctctttctgcct-----------------------TTCTCCT------TCTCTTTTGCCTGTGACCATGTTTAGGTGTCTCTTGGCCTAAAACAAGTCTCTCATCCGT-TTGTGTCGTCCTCAT-CCCTGTCTTTTGTTTTGCCCTCCAGCACCGTGAAGGAGGGGCGTCCCCTCGCTGCCTCTTCTTTACCA-------------CGCGCTGCTCGCCCTGCCCCCACCTCAGGCACTTGGCTCAAGCCG---------TTTTCCT-CAGAGCTACCAGA------------------------ATCTCCTTC-CCAACCGCAAGAACGATTTTCTACAGTCCCCGCGCGTCTC--GTAAATTCGGCCCCATCCATTTATTTGTTCATGAATTTGACAGATGTGTATTGAGCACCCACCTCAACGTGCTCTCCCTGGCCGGCGGCCCCGTG----CCACC-ACCCAGCCTCACCTTCATTGAAGCTGACGGGTCCTGCTCCACCGTCCACTTTCCCGGGcc-----ctccattccccttgccgcctctctcct-cccctccAGGCCCAAATGACAT----------------GTCTCCAGCACTTTCCCTCTCCTGCTGCCCCTCCCTCTCTGGCCACCCTGCGTCTACTCTTACGCCTTACAAATCTGTACTTCT-CCCTGACTTCCCACCCA-TATGCTGGCCTCACCCTCCCAGGGATTTCCTGCCTAGCTCATGCAATGCAGCAGGTCCAGGTCAATCTTTCCTTCCAAGC-TTTCTTC---CTTCCTTCTGTTCATTCTAACAACAGTCCCCCAGACATCCAGCCCAGAAA-GCTCTGGGTCC-TCT-TGATTTCTTCCTCTTCCTTGTCCCCAATGTCCTAGTCGGTACTAGCTGCTCTTCCT-CCAAGTGTTTG--CCCATCACGTCCTCTTGTTTGCTTTGCCACCTCCtccctgtcactctgactattgc
i macFas5.chr2             I 59 C 0
s papAnu2.chr2                109698  937 - 187378091 GAGCCTTCCCCAC--------------ACCCTCCCCGGGGCCCTGTGGCTCC------------------------------------------------------------------------CTCCTGCCT----GGATGGCTCActgctctgc--------------------------------------ctc--tgcc--t--ctgacgctctttctgcct-----------------------ttctc---------ctcTTTTGCCTGTGACCATGTTTAGGTGTCTCTTGGCCTAAAACAAGTCTCTCATCCGT-TTGTGTCGTCCTCAT-CGCTGTCTTTTGTTTTGCCCTCCAGCACCGTGAAGGAGGGGCGTCCCCTCGCTGCCTCTTCTTTACCA-------------CGCGCTGCTCGCTCTGCCCCCACCTCAGGCACTTGGCTCAAGCCG---------TTTTCCT-CAGAGCTACCAGA------------------------ATCTCCTTC-CCAACCGCAAGAACGATTTTCTACAGTCCCCGCGCGTCTC--GTAAATTCGGCCCcatccatttatttgttcatgaATTTGACAGATGTGTATTGAGCACCCACCTCAACCTGCTCTCCCTGGCCGGCGGCCCCGTG----CCACC-ACCCAGCCTCACCTTCATTGAAGCTGACGGGTTCTGCTCCACCGTCCACTTTCCCAGGCC-----CTCCATTCCCCTTgctgcctctctcct-cccctccaggCCCAAATGACAT----------------GTCTCCAGCACTTTCCCTCTCCTGCTGCCCCTCCCTCTCTGGCCACCCTGCGTCTACTCTTACGCCTTACAAATCTGTACTTCT-CCCTGACTTCCCACCCA-TATGCTGGCCTCACCCTCCCAGGGGTTTCCTGCCTAGCTCATGCAATGCAGCAGGTCCAGGTCAATCTTTCCTTCCaagc-tttcttc---cttccttctgttcatTCTAACAACAGTCCCCCAGACATCCAGCCCAGAAA-GCTCTGGGTCC-TCT-cgatttcttcctcttccttgtcCCCAATGTCCTAGTCGGTACTAGCTGCTCTTCCT-CCAAGTGTTTG--CCCATCACGTCCTCTTGTTTGCTTTGCCACCTCCTCCCTGTCACTCTGACTATTGC
i papAnu2.chr2             I 177 C 0
s chlSab2.chr15               462035  941 -  91754291 GAGCCTTCCCCGC--------------ACCCTCCCCGGGGCCCTGTGGCTCC------------------------------------------------------------------------CTCCTGCCT----GGATGGCTCActgctctgc--------------------------------------ctc--tgcc--t--ctgacgctctttctgcct-----------------------TTCTCCT------TCTCTTTTGCCTGTGACCATGTTTAGGTGTCTCTGGGCCTAAAACAAGTCTCTCATCCAT-TTGTGTCGTCCTCAT-CCCTGTCTTTTGTTTTGCCCTCCAGCACCGTGAAGGAGGGGCATCCCCTCGCTGCCTCTTCTTTACCA-------------CGCGCTGCTCGCTCTGCCCCCACCTCAGGCACTTGGCTCAAGTCG---------TTTTCCT-CAGAGCTACCAGA------------------------ATCTCCTTC-CCAACCGCAAGAACGATTTTCTACAGTCCCTGCGCGTCTC--GTAAATTTGGCCCCATCCATTTCTTTGTTCATGAATTTGACAGATGTGTATTGAGCACCCACCTCAACGTGCTCTCCCTGGCCGGCGGCCCCGTG----CCACC-ACCCAGCCTCACCTTCATTGAAGCTGACGGGTCCTGCTCCACCGTCCACTTTCCCGGGCC-----CTCCATTCCCCTTGCCGCCTCTCTCCTCCCCCTCCAGGCCCAAATGACAT----------------GTCTCCAGCACTTTCCCTCTCCTGCTGCCCCTCCCTCTCTGGCCACCCTGCGTCTACTCTTACGCCTTACAAATCTGTACTTCT-CCCTGACTTCCCACCCA-TATGCTGGCCTCACCCTCCCAGGGATTTCCTGCCTAGCTCATGCAATGCAGCAGGTCCAGGTCAAtctttccttccaagc-tttcttc---cttccttctgttcattcTAACAACAGTCCCCCAGACATCCAGCCCAGAAA-GCTCTGGGTCC-TCT-TGATTTCTTCCTCTTCCTTGTCCCCAATGTCCTAGTTGGTACTAGCTGCTCTTCCT-CCAAGTGTTTG--CCCATCACGTCCTCTTGTTTGCTTTGCTACCTCCTCCCTGTCACTCTGGCTATTGC
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               972660  990 -  74750902 GAACCTTCTCCAC--------------ACCCTCCCCAGGGCCCTGTGGCTCC-------CTCCTGCCCCAATGGCTCACTCGTCCAGAACCTTCTCCACGCCCTCCCCAGGGCCCTGTGGCTCCCTCCTGCCC----GGATGGCTCACTCCTCGGC--------------------------------------CTC--TGTCTGT--CTCAGGTGCTTTCTGCCT-----------------------TTCTCCT------TCTCTTTCA-CTGTGAACATGTTCAGGTGTCTCTGGGCCTAAAACAAGTCTCTTGTCGGTCTTGTGTCCTCCGTGT-CCCAGTCTTTTGTTTTGCCCTCCAGTGCGGTGACAAAGGGCCTTCCCCTCACTGCCTCTTCTTCCCTA-------------CGCACTGCTCACTCTG-CCCCACCTCAGTCACTTTGCTCAAGCTG---------TTTTCCT-CAGAGCTACCAGA------------------------ATCTCCTCC-CCAAGTGCAAAAACAATTTTCTCCAGTCCCCACTCGTCTT--GTAAATTCAGCCCCATCCATTCA-TCATTCATGTAT-GGACAGATGTGT-TTGAGTGCCCACCTCAATGTTCTCCCCCTGGCCAGCAGCCCCATGCTGTCCGTC-ACCCAGCCTCCTCCTCATTG-AGCTAAAGGGTCCTGCTCCACCGTCCACTGTCCCTGGCC-----CTCCACGCCCCATCCCGCCTCCCTCC--CTACTCCGTGCCCAGATGGCGT---------------CGCCTCCAGCCCTTTCCCTCTCCTGCCGCCCCTCCCTCTCTGGCCACACTGCACCTACTCTTCTGCCTTACAAATCTGTACTTCT-TCCTGACTTCCCACCCA-GATGCCAGACTC-CCCTCTCCAGGATCTCCTGCCTCACTTATGCAACACA-----TCCACGTCAAACTTGCCCTCCAG---------C---CTTCCTATTGTCAGTTCCATCAACAGTCCC--AGACATCCAGGCCAGAAA-GCTCTGGGTCCGCCT-CGATTTCTTTC---TCCTTGTCCCCCGTGTCATAGTTGGTAGTAGTTGCTATTCCTCCCAAGTGTTTAC-CCCATCACGTCCTCTTGTTCGCTTTGCCACATCCTCCCCATCAATCCGACCACTGC
i calJac3.chr17            C 0 C 0
s canFam3.chr33             29102271 1081 +  31377067 GAACCCTCTCCACCAGGAAACATCTCGGCCTTCACCAGGTCCCT-------C------------------------------------------------------------------------ATCCTGCCCCAGACAATGGTCCGAATCTCTACCAAAAGGCTacacacacacacagacacacacagacacacTCAGGGCC--TTGTCTGCTCCCTTTCTCCCTTCTCAGTTGGCTTAGCCCATCACTTCTCTCTGAGAGTCTCTTCTGCTGACAAACACATCTAGATTTCTCTTGACCTAAAGTAAGTCCTTCATCCATCTTATGTCCCCCTTATGCCCTATCATTTATTTCACGCATGAGCATCCTGAAAGACAGGTCTACACTCTCCATCTCTTTTTTATCATCTATCTACTCCTTACATTCTGCCCTCCACCCCAACCCCACTCACCTCACCAAAAACAGTTTTAGTTTTTTCCTAAAAAGTTACTAAAAACCAAAAACAAAAAACAAAAAACAACTCCTTCTTCATCACCAAAAGCAATTTTCTTCAGTCCCTGTTAGTCTCTGTGAAATCTGGCATGATCCAACcatctggtca--------acaagtatttattgagcgtccacATCAATGT--TCACCTCAGCCATTGTCCCCTTA----ATATCTGCATTACATTGTCTTCCTTGAAGCTGAACAATTCTGCTCATCCAGCACTCTCCCCATTCC-----TTCTGCTCCCTGGGCGATTTctctttt-cttctcagcttccagatgaagtcggtcttctgggtgtcctctccagcc--tttcctttctttcta-cactttctttctggctagactacatttactttcacaccttacaaatctataattctaccctggcttcgcacccgtttttccagactcacctttccagtgatttcctggctggcctgtcaaatgcaa------cacgccaaacttttcctcaaactgtttcttctatcttccttaagttaattgtaacatcagtccctcaggtactcaggacagaaaccccctgagtca-tctctgattccatcctcttccttgtccccagcatcG-GTTTGGCACCAACGATTATCTCT-CTGAATTATTGCTCCCATTGTGGTCTCTTGTTCACTTTGCTGTGTTAACCTTATTACTCTGACCGATGC
i canFam3.chr33            C 0 C 0
e mm10.chr16                65461757 2469 -  98207768 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=307158.000000
s hg38.chr3_KI270935v1_alt    172205 178 +    197351 ggcagcctcctcactgcccctgctGACTCGGGTTCCGCACCCCTGCTCTCAGCCTCCACCGCACCCCTGTGGGTTGATCCTCAGCTCTGAGGGCCAGGAGGGAGGGTTGCTGCTGCTGTCTCCTTAGCTCGAATTGCTTTGGAAAATGGCCTGCCCTGCCTGCCCTGGAAGGTGTCTG
s panTro4.chr3             199809429 178 + 202329955 GGCAGCCTCCTCACTGCCCCTGCTGACTCGGGTTCCGCACCCCTGCTCTCAGCCTCCACCACACCCCTGTGGGTTGATCCTCAGCTCTGAGGGCCAGGAGGGAGGGTTGCTGCTGCTGTCTCCTTAGCTCGAATTGCTTTGGAAAATGGCCTGCCCTGCCTGCCCTGGAAGGTGTCTG
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120926498 178 + 123690457 GGCAGCCTCCTCACTGCCCCTGCTGACTCCGGTTCCACACCCCTGCTCTCAGCCTCCATCACACCCCTGTGGGTTGATCCTCAGCTCTGAGGGCCAGGAGGGAGGGTTGCTGCTGCTGTCTCCTTAGCGCGAGTTGCTTTGGAAAATGGCCTGCCCTGCCTGCCCTGGAAGGTGTCTA
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       82761 177 +    111706 AGCAGCCTCCTCACTGCCCCTGCTGACTCCGGTTCCACAGCCCTGCTCTCAGCCTCCATCACACCCCTGTGGGTTGAACCTCAGCTCTCAGGGCCAGGAGGGAGGGTTTCAGCTGTTGTCTCCTTAGCTTGAACTGCTTTGGAAAATGGCCTG-CCTGCCTGCCCTGGAAGGTGTCTG
i rheMac3.chrUn_JH291127   C 0 I 1
s papAnu2.chr2                110635 177 - 187378091 AGCAGCCTCCTCACTGCCCCTGCTGACTCCAGTTCCACAGCCCTGCTCTCAGCCTCCATCACACCCCTGTGGGTTGATCCTCAGCTCTCAGGGCCAGGAGGGAGGGTTTCGGCTGTTGTCTCCTTAGCTTGAACTGCTTTGGAAAATGGACTG-TCTGCCTGCCCTGAAAGGTGTCTG
i papAnu2.chr2             C 0 I 1
s chlSab2.chr15               462976 178 -  91754291 AGCAGCCTCCTCACTGCCCCTGCTGACTCCGGTTCCACAGCCCTGCTCTCAGCCTCCATCACACACCTGTGGGTTGATCCTCAGCTCTCAGGGCCAGGAGGGAGGGTTTCAGCTGTTGTCTCCTTAGCTTGAACTGCTTTGGAAAATGGCCTGCCCTGCCTGCCCTGGAAGGTGTCTG
i chlSab2.chr15            C 0 I 67
s calJac3.chr17               973650 153 -  74750902 TGCTGCCTC--CACTGCTCCTGCTGACTCTGGCTCCACACCCCTGCTCTCAGCCTCCATGGCACCCCCGTGG------------------GGACCAGGAGGGAGAGTTTCTGCTGTTGTCTTCCTAGCTTGAATTACTTTGGAAAATGTCCTGCATTGCCCACCCTGGAAGGT-----
i calJac3.chr17            C 0 C 0
s canFam3.chr33             29103352 153 +  31377067 AGCAGCCTC-TAACTGCTCCTCTTGATT---GCTCCAC-TCCCTGCCTTCACCCGCTGC----------TGGCTTGATCTTCAGCTATGGGAACCACAAAGGAGAGTCTCT--CATCACTTCCTTAGCAGGGAT--CTTTGAGAGAATGCCTGTATTACCCTCCCTGGAAGG------
i canFam3.chr33            C 0 C 0
e mm10.chr16                65461757 2469 -  98207768 I
e macFas5.chr2                114835   0 + 192460366 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=11869.000000
s hg38.chr3_KI270935v1_alt    172383 43 +    197351 GTAGGTCCTGGGGTCACAGACTGGTGACTGGCATTGGTCCTGG
s panTro4.chr3             199809607 43 + 202329955 GTAGGTCCTGGGGTCACAGACTGGTGACTGGCATTGGTCCTGG
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120926676 43 + 123690457 GTAGGTCCTGGGATCAGAGACTGGTGACTGGCATTGGTCCTGG
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       82939 30 +    111706 GTAGGTCCTGGGGCCATGG-------------GTAGGTCCCGG
i rheMac3.chrUn_JH291127   I 1 C 0
s papAnu2.chr2                110813 29 - 187378091 GTAGGTCCTGGGGCCATGG-------------GTAGGTCCC-C
i papAnu2.chr2             I 1 C 0
s canFam3.chr33             29103505  5 +  31377067 -CAGGC-------------------------------------
i canFam3.chr33            C 0 C 0
e mm10.chr16                65461757 2469 -  98207768 I
e calJac3.chr17               973803  0 -  74750902 C
e chlSab2.chr15               463154 67 -  91754291 I
e macFas5.chr2                114835  0 + 192460366 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=57343.000000
s hg38.chr3_KI270935v1_alt    172426 28 +    197351 GTGTCTGCGTAGGTCCCGGGGGCGTGGG
s panTro4.chr3             199809650 28 + 202329955 GTGTCTGCATAGGTCCCGGGGGCGTGGG
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120926719 28 + 123690457 GTGTCTGCATAGGTCCTGGGGGCGTGGG
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       82969 28 +    111706 GTGTCTGCATAGGTCCTGGGGGCATGGG
i rheMac3.chrUn_JH291127   C 0 I 68
s papAnu2.chr2                110842 28 - 187378091 GTGTCTGCGTAGGTCCTGGGGGCATGGG
i papAnu2.chr2             C 0 I 557
s chlSab2.chr15               463221 28 -  91754291 GTGTCTGCATAGGTCCTGGGGGCATGGG
i chlSab2.chr15            I 67 C 0
s calJac3.chr17               973803 26 -  74750902 --GCCTGTGTAGGTCCTGGGGACATGGG
i calJac3.chr17            C 0 C 0
s canFam3.chr33             29103510 22 +  31377067 ------GCTTGGATCCTGAGGGCATGGG
i canFam3.chr33            C 0 C 0
e mm10.chr16                65461757 2469 -  98207768 I
e macFas5.chr2                114835  0 + 192460366 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=287460.000000
s hg38.chr3_KI270935v1_alt    172454 212 +    197351 TCTAGTGGTC-------------AGAGACTGGTGACTGGCATTG-----------------CCATTGTGACACGGATGTCAGAAACCAGA--------------ATCCTCAGAGGGAGGC-CACTGGGCAAGAATGACCTTCGTCTGGTTGTGACTGAGGA--------AAGA-TACTTCCAGCGCGTCTGTGTGCG-TGGCAGGGTGGCTTCTGTAATAAGAAATGGCCA-CGCCAAGGGATTTCT--CGTTTCTGCGGGAGACATTG--T
s panTro4.chr3             199809678 212 + 202329955 TCTAGTGGTC-------------AGAGACTGGTGACTGGCATTG-----------------CCATTGTGACACGGATGCCAGAAACCAGA--------------ATCCTCAGAGGAAGGC-CACTGGGCAAGAATGACCTTCGTCTGGTTGTGACTGAGGA--------AAGA-TACTTCCAGCGCGTCTGTGTGCA-TGGCAGGGCGGCTTCTATAATAAGAAATGGCCA-CGCCAAGGGATTTCT--CGTTTCTGCGGGAGACATTG--T
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120926747 214 + 123690457 TCTAGTGGTC-------------AGAGACTGGTGACTGGCATTG-----------------TCATTGTGACACGGATGCCAGAAACCAGA--------------ATCCTCAGAGGGAGGC-CACTGGGCAAGAACGACCTTCCTCTGGTTGGGACTGAGAA--------AAGA-TACTTCCAGCGCATCTGTGTGCA-TGGCAGGACAGCTTCTATAATAAGAAATGGCCA-CACCAAGGGATTTCT--CGTTTCTGCGGGAGACATTGTCT
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       83065 213 +    111706 TCTTGTGGTC-------------AGAGGCTGGTGACTGGCATTG-----------------CCGTTGTGACACGGATGCCAGAAACCGGA--------------ATCCTCAGAGGGAGGC-CGTTGGGCCAGAATGACCTTCCTCCGGCTGTGACTGAGGA--------AAGAGGACTTCCAACGCGTCTGTGTGCACCTGCGGGGCAGCTTCCGTAAC-AGAAATGGCCA-CGCCAA-GGATTTCT--CATTTCTGC-GGAGACATTGTCT
i rheMac3.chrUn_JH291127   I 68 C 0
s papAnu2.chr2                111427 213 - 187378091 TCTTGTGGTC-------------AGAGGCTGGTGACTGGCATTG-----------------CCGTTGTGACAC-GATGCCAGAAACCGGA--------------ATTCTCAGAGGGAGGC-CGTTGTTCCAGAATGACCTTCCTCCGGCTGTGACTGAGGA--------AAGAGGACTTCCAGCGCGTCTGTGTGCACCTGCAGGGCAGCTTCTGTAACAAGAAATGGCCA-CGCCAA-GGATTTCT--CATTTCTGC-GGAGACGTTGTCT
i papAnu2.chr2             I 557 C 0
s chlSab2.chr15               463249 206 -  91754291 TCTTGTGGTC-------------AGAGGCTGGTGACTGGCATTG-----------------CCGTTGTGACACGGATGCCAGAAACCAGA--------------ATCCTCAGAGGGAGG---------CCAGAATGACCTTCCTCTGGTTGTGACTGAGGA--------AAGAGGACTTCCAGCGCATCTGTGTGCACCTGCAGGGCAGCTTCTGTAACAAGAAATGGCCA-CGCCAA-GGATTTCT--CGTTTCTGC-GGAGACATTGTCT
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               973829 215 -  74750902 TCTCGCCGTT-------------GGAGGTGAGTGACTGGCATTG-----------------CCACTGTGACATAGATGCAGGAGGTCAGAGTCCTGAGGTGTGTGTCCTCAGAGGGAGGC-CACTGGGTGAGCATGAGCTTCCTCTGGTTGTGACTGAGCA--------GAG--TCCTTCCAGTGTGTCTGTCTGC---------------TCTGCAACAAGATACTGCCA-CACTGAGGCGTTTCTACACTTTCTGTGGGGGACATTGTCT
i calJac3.chr17            C 0 C 0
s canFam3.chr33             29103532 246 +  31377067 TCTAATTGTCTTATCAGGGTCATGAAGACGAGTGACTGGAATCGTTCCTATCATCCTCTCACAACTGTGATAAGAAAATCAGGATCCTGA-------AGCAAGTGTCCTTAGGGGGAGGCTTTTTGGTTCTGGCTGATTCTCATC----TGTGGCTGAGAAGCATGTTCAATAGTCTTGTCCTTAGGTCTATCTGTA-CTGTAGAGTGCTTCCTGGA---GGGAATGCCCATTACCAAGA---------CGTTTCTGTTGGAGACATTGT--
i canFam3.chr33            C 0 I 7
e mm10.chr16                65461757 2469 -  98207768 I
e macFas5.chr2                114835   0 + 192460366 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=300391.000000
s hg38.chr3_KI270935v1_alt    172666 245 +    197351 TCAGTTTtgtagccggcagcttaaattcaaaatgcattttaaacatgttttcccctttctcttgggtttccaaatacaaccttgaggcagctgcaaaggccgttttcctcagcctaaaaatagacttcacgc-------------------------------------------------------------ccctcccttttctcacgat----------------------------------------------------------------------------------------ctgtacacactccctccCT------------------------------CTTCTCACCGTCTGTACACACTCCCTCccttttcttgtcatctgtatacactccctcccttttcttactgtctgt
s panTro4.chr3             199809890 336 + 202329955 TCAGTTTtgtagccggcagcttaacttcaaaatgcattttaaacatgttttcccctttctcttgggtttccaaatacaaccttgaggcaactgcaaaggccgttttcctcagcctaaaaatagacttcacactccctccctcttctcaccgtctgtacacactccctccCTTTTCTTGTCGTCTGTACACACTCCCTCCCTCTTCTCACCGT----------------------------------------------------------------------------------------CTGTACACACTCCCTCCCTTTTCTTGTCGTCTGTACACACTCCCTCCCTCTTCTCACCGTCTGTACACACTCCCTCCCTTTTCTTGTCGTCTGTATACACTCCCTCCCttttcttactgtctgt
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120926961 271 + 123690457 TTGGTTTtgtagctggcagcttaacttcaaaatgcattttaaacatgttttcccctttcccttgggtttccaagtataaccttgaggcaactgcaaaggccgttttcctcagcctaaaaatagactccacgc-------------------------------------------------------------tcctcccttttctcacgat----------------------------------------------------------------------------------------ctgtatacactccctccttcttctcaccgtctgTATACACTCCCT----TTTCTCACCGTCTGTATACACTCCCTCCCTTTTCTCGCCATCTGTATACACTCCCTCccttttctcaccatctgt
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       83278 244 +    111706 TCAGTTTtgcagccggcagtttaccttcaagatgcattttaaa-gttctttccgctttctcttgggtttccaaatataactttgagggaactgcaaaggccgttttccttagcctagaaatagactccatgc-------------------------------------------------------------ccctcccttttctcgctgc----------------------------------------------------------------------------------------ctgtatacaccccctccCT------------------------------TTTCTCGCCGCCTGTATACACCCCCTCCCTTTTCTCGCCGCCTGTATACACCCCCTCCCTTTTCTCGCCGCCTGT
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                111640 332 - 187378091 TCAGTTTTGCAGCCGGCAGTTTACCTTCAAGATGCATTTTAAA-GTTCTTTCCGCTTTCTCTTGggtttccaaatataactttgagGGAACTGCAAAGGCCGTTTTCCTTAGCCTAGAAATAGACTCCACGC-------------------------------------------------------------CCCTCCCTTTTCTCATTGCCTGTATACACTCCCTCCCTTTTCTCGCCGCCTGTATACACCCCTCCCTTTTCTCGCCGCCTGTATACACCCCTCCCTTTTCTCGCCATCTGTATACACCCCCTCCCT------------------------------TTTCTCGCCGTCTCTATACACCCCCTCCCTTTTCTCGCCGTCTGTATACACCCCCTCCCTTTTCTCGCCATCTGT
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               463455 244 -  91754291 TCAGTTTTGCacccggcagtttaccttcaaaatgcattttaaa-gttctttccgctttctcttgggtttccaaatataactttgagggaactgcaaaggccgttttccttagcctaaaaatggactccacgc-------------------------------------------------------------ccctcccttttctcgccgt----------------------------------------------------------------------------------------ctgtatataccccctccct------------------------------tttctcgccatctgtatacACTCCCTCCCTTTTCTTATTGCCTGTATACACCCCCTCCCTTTTCTCATTGCCTGT
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               974044 176 -  74750902 TCAGTTTtgtagccggcagcttaacttcaacatacattttaaa--ccttttcccctttctcttgggtttctaaatacaaccttgaggcaactgcaaaggcctttttcctctgccttaaaatacgctccacgc-------------------------------------------------------------ccctcccttttctcactgt----------------------------------------------------------------------------------------gcatatacactcccttcca------------------------------------------------------------------gtcatcta-------------------------------
i calJac3.chr17            C 0 C 0
e mm10.chr16                65461757 2469 -  98207768 I
e canFam3.chr33             29103778   7 +  31377067 I
e macFas5.chr2                114835   0 + 192460366 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=2734.000000
s hg38.chr3_KI270935v1_alt    172911 20 +    197351 atatactcccttccatt--t--------------------------------ct
s panTro4.chr3             199810226 52 + 202329955 atatactcccttccatt--tatctcaccatctgtatatactcccttccatttct
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120927232 52 + 123690457 atacactcccttccatttat--ctcaccgtctgtatacactcccttccatttct
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       83522 20 +    111706 ATACACCCCCTCCCTTT--T--------------------------------CT
i rheMac3.chrUn_JH291127   C 0 I 273
s macFas5.chr2                114835 20 + 192460366 atacactcccttccatt--t--------------------------------ac
i macFas5.chr2             C 0 I 4
s papAnu2.chr2                111972 20 - 187378091 ATACACCCCCTTCCATT--T--------------------------------AC
i papAnu2.chr2             C 0 I 4
s chlSab2.chr15               463699 20 -  91754291 GTACACCCCCTCCCTTT--T--------------------------------CT
i chlSab2.chr15            C 0 I 633
s calJac3.chr17               974220  1 -  74750902 ----a-------------------------------------------------
i calJac3.chr17            C 0 C 0
e mm10.chr16                65461757 2469 -  98207768 I
e canFam3.chr33             29103778  7 +  31377067 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=596936.000000
s hg38.chr3_KI270935v1_alt    172931 253 +    197351 ctgcgtgcgaggatcgaattatat--gtcttcctaaaagttgcaggggctaaaaccttgagagagacaaaccacatctgaaaatccagctgcaaaatcccagaaattacttcaagacagctc---------------ttgttaaaataatgtcagccagaggtccggacggactgggacccagaagagccaccagaacaagacatgcggacacaggactcagcccgattcttgcgtgccttccttatcaaggcttt--------------------cccctctgaaaatt
s panTro4.chr3             199810278 273 + 202329955 ctgcgtgcgaggatcgaattatgt--gtcttcctaaaagttgcaggggctaaaaccttgaaagagacaaaccacatctgaaaatccagctgcaaaatcccagaaattacttcaagacagctc---------------ttgttaaaataatgtcagccagaggtccggacggactgggacccagaagagccaccagaacaagacatgcggacacaggactcagcccgattcttgcgtgccttccttatcaaggctttactttggaaacccaggctttcccctctgaaaatt
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120927284 253 + 123690457 ctgtgtgcgaggatcgaattatgt--gtcttcctaaaagtttcaggggctaaaaccttgaaagagacaaaccacatctggaaatccagctgcaaaatcccagaaattacttcaagacagctc---------------ttgttaaaataatgtcagcccgaggtccagacggactgggacccaaaagagccaccagaacaagacacaccgacacaggactcagcccgattctcgtgtgccttccttatcaaggcttt--------------------cccctctgaaaatc
i nomLeu3.chr11            C 0 I 305
s rheMac3.chrUn_JH291127       83815 290 +    111706 ctatgtgcgaggattgaactatgtgggtcttcctaaaagtttcaggggctaaaatcttgaaagagacaaaccacatctggaaacccagctgcaaaatcccagaaattacttcatgacaactccttaaaatctggccgttgttaaaataatgtcagctcgaggtccagacggactgggacccaaaagagccaccagaacaagacacatggacacaggactcagcccaattcttgcgcgccttccttatcaaggctttcccttggaaacccatgctttcccctctgaaaatt
i rheMac3.chrUn_JH291127   I 273 C 0
s macFas5.chr2                114859 290 + 192460366 ctatgtgcgaggattgaactatgtgggtcttcctaaaagtttcaggggctaaaatcttgaaagagacaaaccacatctggaaacccagctgcaaaatcccagaaattactttatgacaactccttaaaatccggccgttgttaaaataatgtcagctcgaggtccagacggactgggacccaaaagagccaccagaacaagacacgtggacacaggactcagcccgattcttgcgcgccttccttatcaaggctttcccttggaaacccatgctttcccctctgaaaatt
i macFas5.chr2             I 4 C 0
s papAnu2.chr2                111996 288 - 187378091 CTATGTGCGAGGATTGAACTATGT--GTCTTCCTAAAAGTTTCAGGGGCTAAAATCTTGAAAGAGACAAACCACATCTGGAAACCCAGCTGCAAAATCCCAGAAATTACTTCATGACAACTCCTTAAAATCCGGCCGTTGTTAAAATAATGTCAGCTCGAGGTCCAGACGGACTGGGACCCAAAAGAGCCACCAGAACAAGACACGTGGACACAGGACTCAGCCCGATTCTTGCGCGCCTTCGTTATCAAGGCTTTCCCTTGGAAACCCATGCATTCCTCTCTGAAAATT
i papAnu2.chr2             I 4 C 0
s chlSab2.chr15               464352 288 -  91754291 ctatgtgcgaggattgaactgtgt--gtcttcctaaaagtttcaggggctaaaatcttgaaagagacaaaccacatctggaaacccagctgcaaaatcccagaaattacttcatgacaactccttaaaatccggccgttgttaaaataatgtcagctcaaggtccagacggactgggacccaaaagagccaccagaacaagacacgtggacacaggactcagcccgattcttgcgcgccttccttatcaaggctttcccttggaaacccatgctttcccctctgaaaatt
i chlSab2.chr15            I 633 C 0
s calJac3.chr17               974221 286 -  74750902 ctggatgcaaggagctaattatgt--atcttcctgaaagtttcaggggct--aatcttgaaagagacaagccacatctggaaatccagctgcaatattccagaaattgcttcaagacagctcattcaaatccagccattatcaaaataatgtcagcctgaggtccagacggaccgggacctgaaagagccaccagaacaagacacgcgggcacaagactcagcccaatttttacatgacttccttatccagattctcctttctaaacccgtgctttcccctctgaaaatt
i calJac3.chr17            C 0 C 0
e mm10.chr16                65461757 2469 -  98207768 I
e canFam3.chr33             29103778   7 +  31377067 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=246572.000000
s hg38.chr3_KI270935v1_alt    173184 156 +    197351 aaagcagctactttaagtagaaatctggctgcttcccctttactagttttggttaataaattcacgttcttcctaccagaccttaTGAATTAAACTATCCGTTTAATATAATATAAACTCTCTGCAAGCAGCGAGAGCCTCCGCATCTGCGCTGGG--
s panTro4.chr3             199810551 156 + 202329955 aaagcagctactttaagtagaaatctggctgcttcccctttactagttttggttaataaattcacgttcttcctaccagaccttaTGAATTAAACTATCCGTTTGATATAATATAAACTCTCTGCAAGCAGCGAGAGCCTCCGCATCGGCGTTGGG--
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120927842 130 + 123690457 aaagcagctactttaagtagaaatctggctgcttccccttcactag-tttggttaataaattcactttcttcttaccagaccttatgaattaaa-------------------------ctcggtaagcagcgagagcctctgcatctgcgttGGG--
i nomLeu3.chr11            I 305 C 0
s rheMac3.chrUn_JH291127       84105 132 +    111706 aaagcagctactttaagtagaaatctggctgcttcctctttgctagttttggttaatacattcactttcttcctaccagacctcgtggattaaa-------------------------ctctgcaggcagcgtg-gcctctgcatctgtgctGGGTC
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                115149 132 + 192460366 aaagcagctactttaagtagaaatctggctgcttcccctttgctagttttggttaatacattcactttcttcctaccagacctcgtggattaaa-------------------------ctctgcaggcagcgTG-GGCTCTGCATCTGTGTTGGGTC
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                112284 132 - 187378091 AAAGCAGCTACTTTAAGTAGAAATCTGGCTGCTTCCCCTTTGCTAGTTTTGGTTAATACATTCACTTTCTTCCTACCAGACCTCGTGGATTAAA-------------------------CTCTGCAGGCAGCGTG-GCCTCTGCATCTGTGTTGGGTC
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               464640 132 -  91754291 aaagcagctactttaagtagaaatctggctgcttcccctttgctagttttggttaatacattcactttcttcctaccagacctcgtggattaaa-------------------------ctctgcaggcagcgTG-GCCTCTGCATCTGTGTTGGGTC
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               974507 113 -  74750902 aaagctgctactttcagtagaaatctggctgcttcacctttagtggttttggttaacaaattcgcctgcttcctaccggaccttgttaattaaa-------------------------ctccgGA----------GTTTAATTAACT----------
i calJac3.chr17            C 0 C 0
e mm10.chr16                65461757 2469 -  98207768 I
e canFam3.chr33             29103778   7 +  31377067 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=542556.000000
s hg38.chr3_KI270935v1_alt    173340 273 +    197351 TCGAGTGACTGAGGGTCAGCTGAC-TTGTGATGAAC--------ACA-CCAGGGAGGTGGGGCTTC-TTTTTACTTCTCTCG-TAGGCACGTTATGACTCTATGAATAATACAAATGTTCACAGCTCATgttcatgtg-gtgctttatagcttatctt-gttaatagcggccccatttcacaggcggggaaatcgagattcagcggccccatttcacaggcagggaaattgagatttgaagagaccgagtgatattatatgccttggaagtagcagggccgggggct-
s panTro4.chr3             199810707 273 + 202329955 TCGAGTGACTGAGGGTCAGCTGAC-TTGTGATGAAC--------AGA-CCAGGGAGGTGGGGCTTC-TTTTTACTTCTCTCG-TAGACACGTTATGACTCTATGAATAATACAAATGTTCACAGCTCATgtttgtgtg-gtgctttatagcttatctt-gttaatagcggccccatttcacaggcggggaaatcgagattcagcggccccatttcacaggcagggaaattgagatttgaagagactgagtgatattatatgccttggaagtagcagggccgggggct-
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120927972 274 + 123690457 TCGAGTTACTGAGGGTCAGCTGAC-TTGTGATGAAC--------AGA-CCAGGGAGGTGGGACTTCTTTTTTACTTCTCTCG-TAGGCACATTATGACTCTATGAATAATACAAATGTTCACAGCTCATGTTCATGTg-gggctttatagcttatctt-gttaatagcagccccatttcacaggtggggaaatcgagattcagCGGccccatttcacaggcggggaaatcgagattcgaagagatcgagcgatattatatgccttggaagtagcagggctgggggct-
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       84237 238 +    111706 TCGAGTTACTGGGGGTCAGCTGAC-TTGTGATGAGC--------AGA-CCAGGGAGGCAGGACTTC-TCCTTCCTTTTCTCG-TGAGCACATTATGACTCCATGAATAATACAGATGTTCACAGCTCGTGCTCGTGTTCGTGctttacagctcatctt-gttaa------------------------------------cagcggccgcatttcacaggtgaggaaatcgagatttgaagagactgagtgatattacatgccttggaagtggcagggccgggggct-
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                115281 238 + 192460366 TCGAGTTACTGGGGGTCAGCTGAC-TTGTGATGAGC--------AGA-CCAGGGAAGCAGGACTTC-TCCTTCCTTTTCTCG-TGGGCACATTATGACTCCATGAATAATACAGATGTTCATAGCTCGTGCTCGTGTTCGTGctttacagctcatctt-gttaa------------------------------------cagcggccgcatttcacaggtgaggaaatcgagatttgaagagactgagtgatattacatgccttggaagtggcagggccgggggct-
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                112416 235 - 187378091 TCGAGTTACTGGGGGTCAGCTGAC-TTGTGATGAGC--------AGA-CCAGGGAAGCaggactt----cttccttttctcg-TGGGCACATTATGACTCCATGAATAATACAGATGTTCACAGCTCGTGCTCATGTTCGTGCTTTACAGCTCATCTT-GTTAA------------------------------------CAGCGGCcgcatttcacaggtgaggaaatcGAGATTTGAAGAGACTGAGTGATATTACATGCCTTGGAAGTGGCAGGGCCGGGGGCT-
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               464772 238 -  91754291 TCGAATTACTGGGGGTCAGCTGAC-TTGTGATGAGC--------AGA-CCAGGGAAGCAGGACTTC-TTCTTCCTTTTCTTG-TGGGCACATTATGACTCCATGAATAATACAGATGTTCACAGCTCGTGCTCGTGTTCGTGctttacagctcatctt-gttaa------------------------------------cagcggccgcatttcacaggtgaggaaattgagatttgaagagactgagtgatattacatgccttggaagtggcagggccgggcgct-
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               974620 234 -  74750902 CCAAGTTGCT----GTCAACTGACTTTGAGATGAAC--------AGACCCAGAGACGCGGGATTCCTTTTCTACTTCCCTCC-TAGGCACACTGTGACTCTATGAATAATAAAAATCTTCATGGCT-ATGTTCGTATG-GTGctttacagcttatctt-gttaa------------------------------------tagt-gtctcatttcacaggtgaggaaatagagatttgaagagtccgagtgatactatacaccttggaagtagcggggctgggGGCT-
i calJac3.chr17            C 0 C 0
s canFam3.chr33             29103785 246 +  31377067 TTGAGTTCTTGAGTGTCAACTGAC-TTGTGGCTAACTTGTCCATACA-GTTGGGAATAGGGATTTCTTTTGTACTTGTCTCACTAGGTACATTTTGACTCTATAAATAATAAAAATGTTGATGCCAAATATTTGTATT-GTGCTTTATCGCTCCTTTTAGTTAA------------------------------------TAG-GAccccatttcacaagagaggaaactgagacttggagaggctgagtgac-ttgcatgccttgtaagtggcaaggc-agaggctc
i canFam3.chr33            I 7 C 0
e mm10.chr16                65461757 2469 -  98207768 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=384533.000000
s hg38.chr3_KI270935v1_alt    173613 184 +    197351 cgGGGTAAGAGCCATTGCTCGGAAGCTGCGAGC---TGCTCAGCTCTGGGACTGCCACCGAG--------------------TGGAT------------------GGAGAGCTGAGGCAA-AGATGGAGAAATGGTCACTGACCTGCCCCAAGTTCTTGGACTGCCACATGCAGAGGGCTCTGAGCCTGAGGCCGAGCCAGGCACATTCTC-GGGGTGGACGCTGTG
s panTro4.chr3             199810980 184 + 202329955 cgGGGTAAGAGCCATTGCTCAGAAGCTGCGAGC---TGCTCAGCTCTGGGACTGCCACCGAG--------------------TGGAT------------------GGAGAGCTGAGGCAA-AGATGGAGAAATGGTCACTGACCTGCCCCAAGTTCTTGGACTGCCACATGCAGAGGGCTCTGAGCCTGAGGCCGAGCCAGGCACATTCTC-GGGGTGGACGCTGTG
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120928246 184 + 123690457 cgGGGTAAGAGCCATTGCTCGGAAGCTGCAAGC---TGCTCAGCTCTGGGACTGCCACCGAG--------------------TGGAT------------------GGAGAGCTGAGGCAA-AGATGGAGAAATGGTCACTGACCTGCCCCAAATTCTTGGACTGCCACATGCAGAGGGCTCTGAGCCTGAGGCTGAGCCAGGCACATTCTC-GGGGTGGACGCTGTG
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       84475 149 +    111706 cggggcaagagctgctgctcggaagcTGCGAGC---TGCTCAGGTCTGGGACTACCACCGAG--------------------TGGGT------------------GGAGAGCTGAGG------------------------------------TTCTTGGACTGCCACGTGCAGAGGTCTCTGAGCCTGAGGCTGAGCCAGGCTCATTCTT-GGGATGGACGCGGTG
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                115519 149 + 192460366 cggggcaagagctgctgctcggaagcTGCGAGC---TGCTCAGGTCTGGGACTGCCACCGAG--------------------TGGGT------------------GGAGGGCTGAGG------------------------------------TTCTTGGACTGCCACGTGCAGAGGTCTCTGAGCCTGAGGCTGAGCCAGGCTCATTCTT-GGGATGGACGCGGTG
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                112651 184 - 187378091 CGGGGCAAGAGCTGCTGCTCGGAAGCTGCGAGC---TGCTCAGGTCTGGGACTGCCACCGAG--------------------TGGGT------------------GGAGAGCTGAGGCAA-GGATGGGGAAACGGTCACTGACCTGCCCCAGATGCTTGGACTGCCATGTGCAGAGGTCTCTGAGCCTGAGGCTGAGCCAGGCTCATTCTT-GGGATGGACACGGTG
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               465010 184 -  91754291 cgGGGCAAGAGCGGCTGCTCGGAAGCTGCGAGC---TGCTCAGCTCTGGGACTGCCATCGAG--------------------TGGGT------------------GGAGAGCTGAGGCAA-GGATGGGGAAACGGTCACTGACCTGCCCCAGATTCTTGGACTGCCACGTGCAGAGGTCTCTGAGCCTGAGGCTGAGCCAGGCTCATTCTT-GGGATGGATGCGGTG
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               974854 160 -  74750902 TGAGGTAAGAGCCTCGGCTCTGAGGCTGCGAGC---TG---------------------------------------------GGAT------------------GGAGAGCTGAGGCAA-CAGTGGTGAGATAGTGACTGACCCACCCCAAATTCTTGGACTGCCGCCTGCAGAGGGATCCCAGCCTAAGGCCAGGTCAGGCACATTCTCGGGGGTGAATGCTGTG
i calJac3.chr17            C 0 I 312
s mm10.chr16                65464226 179 -  98207768 CAAAGCAAGGCACAAGGCTCAGAGGATGCACGCTTGTGCTCGGCTCTAGGACTGCCATCTGG--------------------AGTGT------------------GGAA---TGGGG-------GTGAGCTATGACAGTTGGCCTGCCCCAGGTTCTTGAGCTGCTGTGTTGATGAGGAGCTGAGCCTGGGGACAAGCCAGGTGCGTGTTTAGGAGCAGAGAATGTG
i mm10.chr16               I 2469 C 0
s canFam3.chr33             29104031 225 +  31377067 aaaGGTAAGAGTCAAGGCTGGGAAACTGTGAGCTATTGTTGAGCAGCAGGACTGTCACCGAGGGCACGGCCTCTCCACAGTTTGGGCTCTTCTAACCCTTCTTCAGGAGAGCTGAAGTAAGGGATGGAGAAAAGATGACTGCCCTGCCCTGAGTCCTTAGTCT-CCTTAAGCAGAGTGGTCTGAGCCCTGGGGGAATTCA-GCACATTTTCAGGGGCAAGTGATGTG
i canFam3.chr33            C 0 C 0
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=833140.000000
s hg38.chr3_KI270935v1_alt    173797 329 +    197351 ACACTGGGGTGTTTTTG-CAATGTTCCTGGTGTCT-CTTTTCTGGGATGATGTTAGAGTGAG-T-GTGAAGGCTGTTGACACCTTAAGGTGACAAGATCACTGTGAGAAGACACACGTGTGTCATTGAGTAAAACGGATAGTTTTTAAGACATTCTCTC--AGAGGAAGAGTCTCCATCCAGGGACGAGGAGGGCACTGGCGTTGGCACTGAGGTAGAGACGTTCCCCACATCTGAGTCCTTGAAGGCTCTGTCAAGCCTCT--GCCATCACGTCAGCCAGAGATCTCCCATCAAGGTAGTTCTTTTCTCTCCTTGAACCACGTCAGGTGGGAGACG
s panTro4.chr3             199811164 329 + 202329955 ACACTGGGGTGTTTTTG-CAATGTTCCTGGTGTCT-CTTTTCTGGGATGATGTCAGAGTGAG-T-GTGAAGGCTGTTGACACCTTAAGGTGACAAGATCACTGTGAGAAGACACACGTGTGTCATTGAGTAAAACGGATAGTTTTCAAGACATTCTCTC--AGAGGATGAGGCTCCATCCAGGGACGAGGAGGGCACTGGCGCTGGCACTGAGGTAGAGACGTTCCCCACATCTGAGTCCTCGAAGGCTCCGTCAAGCCTCT--GCCATCACGTCAGCCAGAGATCTCCCATCAAGGTAGTTCTTTTCTCTCCTTGAACCACGTCAGGTGGGAGACG
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120928430 329 + 123690457 ACACTGGGGTGTTTTTG-CAATGTTCCTGGTGTCT-CTTTTCTGGGATGATGTTAGAGTGAG-T-GTGAAGGCTGTTGACCCCTTAAGGTGACAAGATCACTGTGAGAAGACACATGTGTGTCATTGAGTAAAATGGATAGTTTTTAAGACATTCTGTC--AGAGGAGGAGGCTCCATCCAGGGACTAGGAGGGCACTGGCGTTGGCACTGAGGTAGACACGTTCCCCACATCTGAGTCCTCGAAGCCTCTGTCAAGCCTCT--GCCATCGTGTCAGCCAGAGATCTCCCATCAAGGTAGTTCTTTTCTCTCCTTGAACCATGTCAGGTGGGAGACA
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       84624 330 +    111706 ACGCTGGGGTATTTTTGCCAATGTTCCTGGCGTCT-CTTTTCTGGGATGATGTTAGGGTGAG-T-GTGAAGGCTGTTGACCCCTTAAGGTGACAAGGTCACTGTGAGAAGACACACGTGTGTCATCGAGTGAAATGGAGAGTTTTAATGACATTCTCTC--AGAGGAGGAGGCTCCATCCAGGGACAAGGAGGGCACTGGAGCTGGCACTGAGGTAGAGACGTTCCCCACATCTGAGTCCTCGAAGCCTCCGTCAAGCCTCT--GCCATCACGTCAGCCAGAGATCTCCCATCAAGGTAGTTCTTTTCTCTCCTTGAACTGCCTCAGGTGGGAGATG
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                115668 330 + 192460366 ACGCTGGGGTATTTTTGCCAATGTTCCTGGCGTCT-CTTTTCTGGGATGATGTTAGGGTGAG-T-GTGAAGGCTGTTGACCCCTTAAGGTGACAAGGTCACTGTGAGAAGACACACGTGTGTCATCGAGTGAAATGGAGAGTTTTAATGACATTCTCTC--AGAGGAGGAGGCTCCATCCAGGGACAAGGAGGGCACTGGAGCTGGCACTGAGGTAGAGACGTTCCCCACATCTGAGTCCTCGAAGCCTCCGTCAAGCCTCT--GCCATCACGTCAGCCAGAGATCTCCCATCAAGGTAGTTCTTTTCTCTCCTTGAACTGCCTCAGGTGGGAGACG
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                112835 330 - 187378091 ACGCTGGGGTCTTTTTGCCAATGTTCCTGGTGTCT-CTTTTCCGGGAAGATGTTAGGGTGAG-T-GTGAAGGCTGTTGACCCCTTAAGGTGACAAGGTCACTGTGAGAAGACACACGTGTGTCATCGAGTGAAATGGAGAGTTTTAATGACATTCTCTC--AGAGGAGGAGGCTCCATCCAGGGACAAGGAGGGCACTGGAGCTGGCACTGAGGTACAGACGTTCCCCACATCTGAGTCCTCGAAGCCTCTGTCAAGCCTCT--GCCATCACGTCAGCCAAAGATCTCCCATCAAGGTAGTTCTTTTCTCTCCTTGAACTGCCCCAGGTGGGAGACG
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               465194 330 -  91754291 ACGCTGGGGTATTTTTGCCAAAGTTCCTGGCGCCT-CTTTTCTGGGATGATGTTAGGGTGAG-T-ATGAAGGCTGTTGACCCCTTAAGGTGACAAGGTCACTGTGAGAAGACACACGTGCGTCACCGAGTGAAATGGAGAGTTTTTAAGACATTCTCTC--AGAGGAGGAGGCTCCACCCAGGGACAAGGAGGGCACTGGAGCTGGTACTGAGGCAGAGACGTTCCCCACATCTGAGTCCTCGAAGCCTCCGTCAAGCCTCT--GCCATCACGTCAGCCAGAGATCTCCCATCAAGGTAGTTCTTTTCTCTCCTTGAACTGCCTCAGGTGGGAGACG
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               975326 326 -  74750902 ACACTGGGATATTCTTGCCAGTGTTCCTGGTTTAT-CCTTT-TGGGATGATGTCAGAGAGAGCT-GTGAAGGCTGTTGACCCCTTAAGGTGACAAGATCACTGTGAGAAGACACA-GTGTGACACAGAGTGAAATGGATAGTTTTTAAGATGTTC-CTC--AGAGGAGGAGGCTCCATCCAGGGATGAGGAGAGCGCTGGAGCTGGCACTGAGGTAGAGACAGTCCTCGAACCTGAGTCCTCGAGCTCTCCATCGAGACTCG--GCC-TCACGTCAGCCAGAGACCTCCCATCATGGTTGTTATTTTCTCTCC-CGAACCGAGTCAGGCAGGAGATG
i calJac3.chr17            I 312 I 366
s mm10.chr16                65464405 265 -  98207768 GCAACAGGACATTTCTA-----TTTCCTGGC-TCT-TCTCTCTCTGATGA--TCAGTGTGAG-TAGTGA--GTTGTTGCACTCTCGGAGTGGCAAAACCACTGTCCGATGGTCCACGTGGGACA--GTCTAAAACAGAAAAACTTCCAA--GTTCTAAG--AGAGGA-GAAGCGTCACACAGGGATA------GCAACGCCTTTGGTTCTGAGGTGGGGCTGAGCCTTGTAGCTGTGTCCTGGAGACCTCAGTACACGCTCT--GCC--TACTCTGGC---------CTCAACAAAG--------------CCATGG--------------------
i mm10.chr16               C 0 C 0
s canFam3.chr33             29104256 320 +  31377067 ACACCAGGTTATTTCTGCCAATTTTCCTAGTATCTCCTTTTCTGTGATGATGTCA--GTGAGTT-ACAATGGTTGTTGACCCCTTGGGGTGATAAAACTACTGTCAGAAGACCCAAGTGTGATATAGCCTAAGATGGATAGTTCAAAAGAAGCTCCCTCAGAGAGGAGGAGCCTGCATCAGGAGCCAGTGAGAGCACCAGGGCCGGTA-TGAGGTAGGG-CATTCCTCAC-TTGGAGTCCTGGAACCCTCCA-CGGGTTTCTTGGCTACCACTGCAGGGAGAGAGCTCTCAGCAAAGCAGCTAT----------TAAACTGCGTCTGGTGGGAGGTA
i canFam3.chr33            C 0 C 0
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=1085795.000000
s hg38.chr3_KI270935v1_alt    174126 431 +    197351 ----GCCCACAGCTGCCTCACGTCTGTTAGGGCTCCA--GGATGTGAAGGCCG--A--GTGGCAGTAGGCATCGTTTTCCCCAGAT-------GGCCCCTCTGGTGACTCCACAGGTGTGCCGAGGTGACAGGTGTGCTGTTGGCTCGGGAGAAGGAGTGGCAGCAGTATGAGTGACGCTGGCAGAAG-ACAG-ATTCCAAGAAGG-GTGAAGCCACTCCCTGAAGACACA-CAAAGCCTGCGGCTT---TCTAAGTGCTGTGGGTTGAGGCTTATTCCTAGCATCTGGTCTGTTTGTCTTGGGTTTT--TCCTGGAACTGGAGGTGAGGAACCCGTAAGCCGTATCG-CCACAGT--GTTTCACTTTCCTGGAGGGGAATTACTTCCTGACGGGTGGGGCCCCTTGCCAGGCTGCCTCGGGCAGGGCAGTGTAAGCCCAAGGGAAGTGCCCAACGGTAA
s panTro4.chr3             199811493 431 + 202329955 ----GCCCACAGCTGCCTCACGTCTGTTAGGGCTCCA--GGATGTGAAGGCCG--A--CTGGCAGTAGGCATCGTTTTCCCCAGAT-------GGCCCCTCTGGTGACTCCACAGGTGTGCCGAGGTGACAGGTGTGCTGTTGCCTCGGGAGAAGGAGTGGCAGCAGTATGAGTGACGATGGCAGAAG-ACAG-ATTCCAAGAAGG-GTGAAGCCACTCCCTGAAGACACA-CAAAGCCTGCGGCTT---TCTAAGTGCTGTGGGTTGAGGCTTATTCCTAGCATCTGGTCTGTTTGTCTTGGGTTTT--TCCTGGAACTGGAGGTGAGGAACCCATAAGCCGTATCA-CCACAGT--GTTTCACTTTCCTGGAGGGGAATTACTTCCTGACGGGTGGGGCCCCTTGCCAGGCTGCCTCGGGCAGGGCAGTGTAAGCCCAAGGGAAGTGCCCAGCGGTAA
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120928759 420 + 123690457 ----GCCCGCAG-----------CTGTTAGGGCTCCA-GGGATGTGAAGGCTG--A--GTGGCAGTAGGCATCGTTTTCCCCAGGT-------GGCCCCTCTGCTGACTCCACAGGTGTGCCGAGGTGACAGGTGTGCTGTTGGCTCTGGAGAAGGAGTGGCAGCAGCATGAGTGACGATGGCGGAAG-ACAG-GTTCCAAGAAGG-GTGAAGCCAATCCCTGAAGAAACA-CAAAGCCTGCGGCTT---TCT-AGTGCTGTGGGTTGAGGCTTATTCCTAGCATCTGGTCTGTTTGTCTTGGGTTTT--TCCTGGAACTGGAGGTGAGGAACCCGTAAGCCATATGG-CCACAGT--GTTTCTCTTTCCTGGAGCGGAATTACTTCCTGACGGGTGGGGCCCCTTGCCAGGCTGCCTCGGGCAGGGCAGTGTGAGCCCAAGGGAAGTGCCCAACGGTGA
i nomLeu3.chr11            C 0 I 258
s rheMac3.chrUn_JH291127       84954 434 +    111706 ----CCCCGAAGCGGCCTCGCGTCTTTTAGGGCTCCA-GGAACGTGAAGGCTG--A--GTGGCAGTC-GCATGGTTTTCCCCAGGTTTTCCCCAGTCCCTCTGGTGATTCCACAGGTGTGCCGAGGTGACAGGTGTGCTGTTGGCTCGGGAGAAGGACTGGCAGCAGCATGAGTGACGATGGCGGAAG-ACAG-ATTCCAAGACGG-GTGAAGCCACTCCCTGAAGAAACAGCAAAGCCTGCGGCGT---TCTAAGTGCTGTGGCTTGAGGCTTGTTCCTAGCCTCTGGTCTGTTTGCCTTGGGTTTT--TCCTGGAACCGGAGGTGAGGAACCCATAAGCCACATCGCCCACAGT--GTTTCACTTTCCT-----GGCATTACTTCCTGCCCGGTGGGGCCCC-TGCCAGGCTGCCTCAGGCAGGGCAGTGTAAGCCCAAGGGAAGTGCCCAACGGTAA
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                115998 434 + 192460366 ----CCCCGCAGCGCCCTCGCGTCTTTTAGGGCTCCA-GGAACGTGAAGGCTG--A--GTGGCAGTC-GCATGGTTTTCCCCAGGTTCTCCCCAGTCCCTCTGGTGATTCCACAGGTGTGCCGAGGTGACAGGTGTGCTGTTGGCTCGGGAGAAGGACTGGCAGCAGCATGAGTGACGATGGCGGAAG-ACAG-ATTCCAAGACGG-GTGAAGCCACTCCCTGAAGAAACAGCAAAGCCTGCGGCGT---TCTAAGTGCTGTGGCTTGAGGCTTGTTCCTAGCATCTGGTCTGTTTGCCTTGGGTTTT--TCCTGGAACCGGAGGTGAGGAACCCATAAGCCACATCGCCCACAGT--GTTTCACTTTCCT-----GGCATTACTTCCTGCCCGGTGGGGCCCC-TGCCAGGCTGCCTCAGGCAGGGCAGTGTAAGCCCAAGGGAAGTGCCCAACGGTAA
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                113165 423 - 187378091 ----CCCCGCAGCGGCCTCGCGTCTTTTAGGGCTCCA-GGAACGTGAAGGCTG--A--GTGGCAGTA-GCATGGTTT-----------TCCCCAGTCCCTCTGGTGACTCCACAGGTGTCCCGAGGTGACAGGTGTGCTGTTGGCTCGGGAGAAGGACTGGCAGCAGCATGAGTGACGATGGCGGAAG-ACAG-ATTCCAAGACGG-GTGAAGCCACTCCCTGAAGAAACAACAAAGCCTACGGCGT---TCTAAGTGCTGTGGCTTGAGGCTTGTTCCTAGCGTCTGGTCTGTTTGCCTTGGGTTTT--TCCTGGAACCGGAGGTGAGGAACCCAAAAGCCATATCGCCCACAGG--GTTTCACTTTCCT-----GGCATTACTTCCTGCCTGGTGGGGCCCC-TGCCAGGCTGCCTCAGGCAGAGCAGTGTAAGCCCAAGGGCAGTGCCCAACGGTAA
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               465524 427 -  91754291 ----CCCCCCAGCGGCCTCGCGTCTTTTAGGGTTCCA-GGAACGTGAAGGCTG--A--GTGGCAGTA-GCATGGTTTTCCCCAGGT-------GGTCCCTCTGGTGACTCCACAGGTGTGCCGAGGTGACAGGTGTGCTGTTGGCTCGGGAGAAGGGCTGGCAGCAGCATGAGTGACGATGGCGGAAG-ACAG-ATTCCAAGACCG-GTGAAGCCACTCCCTGAAGAAACAACAAAGCCTGCGGCGT---TCTAAGTGCTGTGGCCTGAGGCTTGTTCCTAGCATCTGGTCTGTTTGCCTTGGGTTTT--TCCTGGAACCGGAGGTGAGGAACCCATAAGCCATATCGCCCACAGT--GTTTCACTTTCCT-----GGCATTACTTCCTGCCTGGTGGGGCCCC-TGCCAGGCTGCCTCAGGCAGGGCAGTGTAAGCCCAAGGGAAGTGCCCAACGGTAA
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               976018 419 -  74750902 ----GTCCCCAGCTG-CTCACGTCTCTTAGGGCTCCA-GGGATGTCAAGGATG--A--CTGACAGCAGGCATGGTTTTCCCCAGGT--------GGCCCTCTGGTGACTCCGCAGGTGTGACAAGGTGACAGGTGTGCTGCTGGCTTGGGAGAAGGAGTGGTGGCAGCATGAGTGGTGATGGCGG--G-ACAC-ATTCCAAGATGG-GTGACGGCACTCCCTGAGGAAACCACGAAGCCTGCGGCTT---TGCGTGCG-TGTGGGCTGAGGTCTGTTCCTGGCATCTGGTCTGTTTATTTTGAGTTTT--TCCTGGAACGGGGGGTGAGGGACCCATCGACTGTATTGCCCACAGT--GTTCCACTTTCCT-----GGCATTACTCCCTGGCTGCTGGGGCCCCTTGCCTGGCCGCCTC-----GGGCAGTGTAAGCCCAAGGGAGGCGCCCAACCATAA
i calJac3.chr17            I 366 C 0
s mm10.chr16                65464670 423 -  98207768 ----CCCCCCAGCTGTGTGGTGCCTCTCAGGGTTCCA-GGGATGGTGAGGTTGAAA--GTGAAAATGGTCATCACTCTTCTCAG---------TGGCCCTCTGGTGACTCTACAGTCATGAGAAGGTGATGGGTGTGCTGTTGATTC---AGGGGGAGTGGTGGCAGCAGGGGTGTAGAGGACAGAAGAATAC-ATTCC-AGTGGG-GTGGAGTGTCACACCACAGAGAGA-AAATGTGCTTCACCT---GGCATGCTCTGTGGGCTGAGGCTGCGTCTTAGCACCTTCTCTGTTTGTTTTGGGTTTTTCTCCTGGATCTAGAGGTGACAACCCCATAAACCAAATTTCCCACAATCCCCCTCACTTCCTC-----AATGCTCTTTCTTGGCTGGCGATCTCTT-TGCAGGGTTGCCTGGGAGAGAGTAG----AGTCCAAGCAGAGAACCCAACGGTA-
i mm10.chr16               C 0 C 0
s canFam3.chr33             29104576 424 +  31377067 CCTAGCCCTCGTCTGAGTC----CTCTCAGGACTGCAGGGAAGGCAGAGGTTG--ATGGTGTTGATAGAAACTGTTTCTG-------------TGGCCCTCTGGTTACTCCACAGGTATGAGGAGGTGGTGGGCGTGTTGTTGACTCAGCTGAAGGAGTGGTGGCCGCAGTGGTGATGCTGATGGAAG-ATAACATTCCCACACCATGGTAAATCACTCCTTAAAGAGAAA-CAAAGCCTATGTCTTACATGTGTGCATTGTGGGCAGAAGTTTATTCTTAGTGCCTGCTCTGTTTGTCTTAAGTTAT--TCCTGGAACTGGAGGTGAGGAACCCATGAGCCATATCACCCACAAA--GTTTCACTTTTCT-----GCTGTTATTTCCTGATTGGTGGGACTC--TGCCAGGCTGTGCCTG---GGGCCGTGTAGAGCTAAG-GAAGCACTCAACTGTGA
i canFam3.chr33            C 0 C 0
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=73258.000000
s hg38.chr3_KI270935v1_alt    174557 43 +    197351 GGATGGCCTTGAGGAGAACATTCAGCCCCACACAGGCAGCAGG
s panTro4.chr3             199811924 43 + 202329955 GGATGGCCTTGAGGAGAACATTCACTCCCACACAGGCAGCAGG
i panTro4.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       85388 43 +    111706 GGATGGCCTTGAGGAGAACATTCGCCCACACACAGGCGGCAGG
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                116432 43 + 192460366 GGATGGCCTTGAGGAGAACATTCGCCCACACACAGGCAGCAGG
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                113588 43 - 187378091 GGATGGCCTTGAGGAGAACATTCGCCCGCACACAGGCGGCAGG
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               465951 43 -  91754291 GGATGACCTTGAGGAGAACATTCGCCCGCACACAGGCGGCAGG
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               976437 41 -  74750902 AGATGGCCTTGAGGAGAACACTC-CCCCTACCCGGGCCGTGG-
i calJac3.chr17            C 0 C 0
s mm10.chr16                65465093 19 -  98207768 -----------------GCATTTTTTT-------AGCAGTAAA
i mm10.chr16               C 0 C 0
s canFam3.chr33             29105000 43 +  31377067 GGATAGCCTTGAAGAGAAAATTGACTCATGAATGGGCAGCAGG
i canFam3.chr33            C 0 C 0
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120929179 258 + 123690457 I

a score=50153.000000
s hg38.chr3_KI270935v1_alt    174600 25 +    197351 CGGCCCGGAA---------------GGCGCGCAGACGCTG
s panTro4.chr3             199811967 25 + 202329955 CAGCCCGGAA---------------GACGTGCAGACACTG
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120929437 25 + 123690457 CGGCCCGGAA---------------GGCGCGCAGATGCTG
i nomLeu3.chr11            I 258 C 0
s rheMac3.chrUn_JH291127       85431 25 +    111706 CGGCCGGGAA---------------GGCGTGCAGACGCTG
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                116475 25 + 192460366 CGGCCGGGAA---------------GGTGTGCAGACGCTG
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                113631 25 - 187378091 CGGCCTGGAA---------------GGCGTGCAGACGCTG
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               465994 25 -  91754291 CAGCCTGGAA---------------GGCCTGCAGACGCTG
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               976478 24 -  74750902 CCATCCGG-A---------------GGTGTGCAGACACTG
i calJac3.chr17            C 0 I 27
s mm10.chr16                65465112 25 -  98207768 TGAGTTGGAA---------------AGTGTATAGAAGTTG
i mm10.chr16               C 0 I 7
s canFam3.chr33             29105043 40 +  31377067 TGCCCTGAAAGCTAATAAAGAGATCGGCAGAGAGAGGCAG
i canFam3.chr33            C 0 C 0
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=145383.000000
s hg38.chr3_KI270935v1_alt    174625  85 +    197351 AACCGCTGGC----CCCACCGCCTTTGGCAGGGAGCTAATGCTATTTGTG----TATCAG-CCCAGAAT-----CAACTGTGACCAGGGTTGTGTCCAC-------
s panTro4.chr3             199811992  85 + 202329955 AACCGCTGGC----CCCACCGCCTTTGGCAGGGAGCTAATGCTATTTGTG----TATCAG-CCCAGAAT-----CAACTGTGACCAGGGTTGTGTCCAC-------
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120929462  85 + 123690457 AACC-CCGGC----CCCACCGCCTTTGACGGGGAGCTAATGCTATTTGTG----TATCAGCCCCAGAAT-----CGACTGTGACCAGCGTTGTGTCCAC-------
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       85456  86 +    111706 AACTGCCGGC----CCCACCGCCCTTGGTGGGGAGCTAATGCTATCTGTG----TATGACCCCCAGAAT-----CAACTGTGACCAGCGTTGTGACCAC-------
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                116500  86 + 192460366 AACCGCCGGC----CCCACCGCCCTTGGTGGGGAGCTAATGCTATCTGTG----TATCAGCCCCAGAAT-----CAACTGTGACCAGCGTTGTGACCAC-------
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                113656  90 - 187378091 AACTGCCGGCCCCACCCACCGCCCTTGGTGGGGAGCTAATGCTATCTGTG----TATCAGCCCCAGAAT-----CAACTGTGACCAGCGTTGTGACCAC-------
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               466019  86 -  91754291 AACCGCCGGC----CCCACCGCCCTTGGTGGGGAGCTAATGCCATCTGTG----TATCAGCCCCAGAAT-----CAACTGTGACCAGCGTTGTGACCAC-------
i chlSab2.chr15            C 0 C 0
s mm10.chr16                65465144  66 -  98207768 GAGGGCCAGC----CTT-CCACCCT----------------CTGTGTGCA----TATCAG-CCTTGAAT-----AGAC--TGACGGGTATTGCATGCAC-------
i mm10.chr16               I 7 I 5
s canFam3.chr33             29105083 102 +  31377067 GACCCCCTGC----CTGGCCTCCCTGTTTGGGAGCCAAGAGCCATCTGTACCTCTGTCAGCCGCAGCATAGGCACAGCTCTTATCCTCATGGTGGTAACTGGGCTT
i canFam3.chr33            C 0 C 0
e calJac3.chr17               976502  27 -  74750902 I
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=5879.000000
s hg38.chr3_KI270935v1_alt    174710 15 +    197351 TGGGTA-CTTC----------CCTAG
s panTro4.chr3             199812077 15 + 202329955 TGGGTA-CTTC----------CCTAG
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120929547 16 + 123690457 TGGGTATTTTC----------CCTAG
i nomLeu3.chr11            C 0 C 0
s mm10.chr16                65465215 25 -  98207768 TGTGTC-TTTCTTTTATCTGTCCTAG
i mm10.chr16               I 5 C 0
s canFam3.chr33             29105185 15 +  31377067 TGGGTA-CTCC----------CTCAG
i canFam3.chr33            C 0 I 1884
e rheMac3.chrUn_JH291127       85542  0 +    111706 C
e calJac3.chr17               976502 27 -  74750902 I
e chlSab2.chr15               466105  0 -  91754291 C
e macFas5.chr2                116586  0 + 192460366 C
e papAnu2.chr2                113746  0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=49786.000000
s hg38.chr3_KI270935v1_alt    174725 181 +    197351 AATTCAAGATGAGGAAAGACACTAACTCAAGATACCCTTGGAATAACAGACCTCTtgtgatctccagcgcctgaaacgagacttg--gcatacagcagtgacttcgtacacatctgtggaata----------------------------------------------------------------------------------------catCCCAGGCCCTGTGGCCTTTGTTGCCTTCAGCCGAGGCTGGAGAGAGGGTGACGTTGC
s panTro4.chr3             199812092 269 + 202329955 AATTCAAGATGAGGAAAGACACTAACTCAAGATACCTTTGGAATAACTGACctcttgtgatctccagagcctgaaacgagacttg--gcatacagcagtgacttcatacacatctgtggaatACAGGGGCTCCTGCGatctccagcgcctgagacgagacctggcatacagcagtgacttcatacacatctgtggaatACAGGGGCTCCTGCATCCCAGGCCCTGTGGCCTTTGTTGCCTTCAGCCGAGGCTGGAGAGAGGGTGACGTTGC
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120929563 193 + 123690457 GATTCAAGATGAGGAAAGACACTAACTCAAGATGCCCTTGGAATAACTGACctcttgtgatctccagcgcctgaaacgagacctg--gcatacagcaatgccttcataaacatctgtggaata----------------------------------------------------------------------------caggaGCTCCTGCGTCCCAGGCCCTGTGGCCTTTGTTGCCTTCAGCCGAGGCTGGAGAGAGGGCGACGTTGC
i nomLeu3.chr11            C 0 C 0
s mm10.chr16                65465240 158 -  98207768 AATTCAAGACAAGGAAGGAGACTAAATCGAAATACTCGAG-------------------------AGAGTCTGGCAGATCACCTGGAGCAGACTAGAATGACATCATCGACATCTTTTGCACG----------------------------------------------------------------------------CA----------CTCCCCAGGCCCTA-GCCTTTTAGTTCTGTCAG-TGAGGTTGGAGGGAGAATGAGGTGGC
i mm10.chr16               C 0 I 2011
e rheMac3.chrUn_JH291127       85542   0 +    111706 C
e canFam3.chr33             29105200 1884 +  31377067 I
e calJac3.chr17               976502  27 -  74750902 I
e chlSab2.chr15               466105   0 -  91754291 C
e macFas5.chr2                116586   0 + 192460366 C
e papAnu2.chr2                113746   0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=30087.000000
s hg38.chr3_KI270935v1_alt    174906 116 +    197351 CTGtttctttatctttatc---ttttttttttttgagatggagtctcgctctgtcgcccaggcaggagtgcagtggtgcgatctcagctcactgtaacctccacctcccaggttcaagT
s panTro4.chr3             199812361 119 + 202329955 CTGTttctttatctttatctttttttttttttttgagatggagtctcgctctgtcgcccaggcaggagtgcagtggtgcgatctcagctcactgtaacctccacctcccaggttcaagT
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120929756 118 + 123690457 CTGtttctttatctttatc-ttttttttttttttgagatggagtcttgctctgtcgcccagacaggagtgcagtggggtgatctcagcacactgtaacctccgcctcccaggttcaagT
i nomLeu3.chr11            C 0 C 0
e rheMac3.chrUn_JH291127       85542   0 +    111706 C
e mm10.chr16                65465398 2011 -  98207768 I
e canFam3.chr33             29105200 1884 +  31377067 I
e calJac3.chr17               976502  27 -  74750902 I
e chlSab2.chr15               466105   0 -  91754291 C
e macFas5.chr2                116586   0 + 192460366 C
e papAnu2.chr2                113746   0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=29121.000000
s hg38.chr3_KI270935v1_alt    175022  74 +    197351 CCCTTCACAGTGGACTCCAAGGCGAGAACTTTACCCGTTCTTTCCAACGATCCCCGCCGAAGTCACACCCCAAC----------------------------
s panTro4.chr3             199812480  74 + 202329955 CCCTTCACAGTGGACTCCAAGGCGAGAACTTTACCTGTTCTTTCCAACGATCCCCGCCAAAGTCACACCCCAAC----------------------------
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120929874  74 + 123690457 CCCTTCACAGTGGACTCCAAGGCAAGAACTTTATCGGTTCTTTCCAACGATCCCCACCGAAGTCACACCCCAAC----------------------------
i nomLeu3.chr11            C 0 I 27
s canFam3.chr33              2270819 102 -  31377067 CCCTTCACAGTTGGCTCCAAGACAAGAACTTTATCTTTTCCTTCTGACTATACCCATCGAAGTCACATTACAAACAATACCTATCAACTAGGTGTCACTTCA
i canFam3.chr33            n 1884 C 0
e rheMac3.chrUn_JH291127       85542   0 +    111706 C
e mm10.chr16                65465398 2011 -  98207768 I
e calJac3.chr17               976502  27 -  74750902 I
e chlSab2.chr15               466105   0 -  91754291 C
e macFas5.chr2                116586   0 + 192460366 C
e papAnu2.chr2                113746   0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=170699.000000
s hg38.chr3_KI270935v1_alt    175096 302 +    197351 CCATGGATCCCACCACCGGTCATTTGACCTCATTTCTGTCAGCATCTGGTGTGGCAGCACCCAG-CCACTCTGGTGATCGCCACAGAAGCTCCAGCACCAAACCAAGAAGCACCAAAATCCGGCTGTG-----AGCACA-GCACGCCGG-CCAGCTC-AACTCTCTTTTCCCCAACGCCTCCTTCTCGGAGGTGCCATCTCCAGTCTCCACCATCTTGGTGTTGCCACCCATCTCT-CCTGGCTCCCA-CTGGGGCAGGCACATCCTCCTAGCCTAGCGCTGTCCTCAGGAGCCTGGCTGCCT--CTCCACAGTG
s panTro4.chr3             199812554 307 + 202329955 CCATGGATCCCACCACCGGTCATTTGACCTCATTTCTGTCAGCATCTGGTGTGGCAGCACCCAG-CCACTCTGGTGATCGCCGCAGAAGCTCCAGCACCAAAGCAAGAAGCACCAAAATCCGGCTGTGAGCACAGCACA-GCACGCCGG-CCAGCTC-AACTCTCTTTTCCCCAACGCCTCCTTCTCGGAGGTGCCATCTCCAGTCTCCACCATCTTGGTGTTGCCACCCATCTCT-CCTGGCTCCCA-CTGGGGCAGGCACATCCTCCTAGCCTAGCGCTGTCCTCAGGAGCCTGGCTACCT--CTCCACAGTG
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120929975 303 + 123690457 CCATGGATCCCACCACCGGTCATTTGACCTCACTTCTGTCAGCGTCTGTTGTGGCAGCACCTGG-CCACCCTGGTGATCGCCGCAGAAGCTTCAGCACCAAACCTAGAAGCACCAAAATCCGGCTGTG-----AGCACA-GCACACCGGCCCAGCTC-AACTCTCTTTTCCCCAACGCCTCCTTCTCAGAGGTGCCATCTCCCGTCTCCACCATCTTGGTGTTGCCACCCATCTCT-CCTGGCTCCCA-CCAGGGCAGGCACATCCTCTTAGCCTAGGGCTGTCCTCAGGAGCCTAGCTACCC--CTCCACAGTG
i nomLeu3.chr11            I 27 C 0
s calJac3.chr17               976529 299 -  74750902 CCATGGATATCCCCACAAGCCATTTGACCTCATTTCTGTCAG-ATCTGGGGTGGCAGCACCCAG-CCACTCTGGTGATTGCCACAGAAGCTCCAGCACCAAGCC-AGGAGCGCCAAAACCCGGCTCTG-----ACCACA-GCACACCAGCCCACCTC-AACTGTC-TTCCCCCAGTGCCTCCTTCTCAGAACTTCCATCTCCAGGCTCCG-CGTCTTGCTGTTGGCGCCCGTCTCT-CCTGGCTCCCGCCTGAGGCGGCCACCCCCTCCTAGCCTAGGGCTGTCCTCAGGAGCTGGGCTATCT---GCCACAGTG
i calJac3.chr17            I 27 I 684
s canFam3.chr33              2270921 287 -  31377067 CCTTGGACGCCATCACAGGTCATTTGACCTAACTTCTGCCAGCATCCG-TGTAGCAGCACCAAGATTACCCTGGTGAAAATCCCAGAAGCTCCAGAACCTAGCCAAGCAGTGTCAAAATCCAGCTTCA-----ACCAGATGTTCACAAGCACAGCTCTGGCTTTCTCTTCCCCACCCCTTCCT------------CTTCTCTAGG---------CTTGGGTTTAGAGCTCATCTCTCCCTGGCTCCCCTCCGAGGCAGGCAC-CCCTCCTAGTCTAGGGTTGCCCTCAGGAATTTGGCCATCTTCTGCTACAGTT
i canFam3.chr33            C 0 C 0
e rheMac3.chrUn_JH291127       85542   0 +    111706 C
e mm10.chr16                65465398 2011 -  98207768 I
e chlSab2.chr15               466105   0 -  91754291 C
e macFas5.chr2                116586   0 + 192460366 C
e papAnu2.chr2                113746   0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=1146.000000
s hg38.chr3_KI270935v1_alt    175398 2 +    197351 GT
s panTro4.chr3             199812861 2 + 202329955 GT
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120930278 2 + 123690457 GT
i nomLeu3.chr11            C 0 C 0
s canFam3.chr33              2271208 2 -  31377067 GT
i canFam3.chr33            C 0 n 0
e rheMac3.chrUn_JH291127       85542 0 +    111706 C
e mm10.chr16                65465398 2011 -  98207768 I
e calJac3.chr17               976828 684 -  74750902 I
e chlSab2.chr15               466105 0 -  91754291 C
e macFas5.chr2                116586 0 + 192460366 C
e papAnu2.chr2                113746 0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=35501.000000
s hg38.chr3_KI270935v1_alt    175400 132 +    197351 TAGCCTCGGGCTGTCCTGGTGTGGTGGTGTGTGCCTGTGATCCCAGTTGGAAtcaagtgcttctcctgcctcagcctcctgagtagctgggattacaggtgcccaccaccatctcctgctaatttttgtatt
s panTro4.chr3             199812863 132 + 202329955 TAGCCTCGGGCTGTCCTGGTGTGGTGGTGTGTGCCTGTGATCCCAGTTGGAAtcaagcgcttctcctgcctcagcctcctgagtagctgggattacaggtgcccaccaccatcccctgctaatttttgtatt
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120930280 132 + 123690457 TAGCTTTGGGCTGTCTTGGTGTGGTGGCGTGTGCCTGTGATCCCAGTTGGAAtcaagcgattctcctgcctcagcctcctaaatagctgggattacaggtgcccaccaccatcccctgctaatttttgtatt
i nomLeu3.chr11            C 0 M 1820
e rheMac3.chrUn_JH291127       85542   0 +    111706 C
e mm10.chr16                65465398 2011 -  98207768 I
e canFam3.chr33              2271210   0 -  31377067 I
e calJac3.chr17               976828 684 -  74750902 I
e chlSab2.chr15               466105   0 -  91754291 C
e macFas5.chr2                116586   0 + 192460366 C
e papAnu2.chr2                113746   0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M

a score=1028.000000
s hg38.chr3_KI270935v1_alt    175532 11 +    197351 tttagtagaga
s panTro4.chr3             199812995 11 + 202329955 tttagtagaga
i panTro4.chr3             C 0 M 606
e rheMac3.chrUn_JH291127       85542  0 +    111706 C
e mm10.chr16                65465398 2011 -  98207768 I
e canFam3.chr33              2271210  0 -  31377067 I
e calJac3.chr17               976828 684 -  74750902 I
e chlSab2.chr15               466105  0 -  91754291 C
e macFas5.chr2                116586  0 + 192460366 C
e papAnu2.chr2                113746  0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120930412 1820 + 123690457 M

a score=0.000000
s hg38.chr3_KI270935v1_alt    175543 77 +    197351 cggggttttgccatgttggccagtctggtctcaaactcctgacctcaagtgatctgcccgcttcagcttcccagagt
e rheMac3.chrUn_JH291127       85542  0 +    111706 C
e mm10.chr16                65465398 2011 -  98207768 I
e canFam3.chr33              2271210  0 -  31377067 I
e calJac3.chr17               976828 684 -  74750902 I
e chlSab2.chr15               466105  0 -  91754291 C
e macFas5.chr2                116586  0 + 192460366 C
e papAnu2.chr2                113746  0 - 187378091 C
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120930412 1820 + 123690457 M
e panTro4.chr3             199813006 606 + 202329955 M

a score=81209.000000
s hg38.chr3_KI270935v1_alt    175620 96 +    197351 gctgggatgacagccatgagtcactgtgcctggccTTGTCTGTCATTTCAATTACTCAAAATCCATAATCTGggccgggcgcagtggctcacactg
s rheMac3.chrUn_JH291127       85542 96 +    111706 GCTGGGGTGACAGGCATGAGCCACCATGACCAGCCTTGTCTGTCATTTTAGTTACTCAAAATCCATAATCTGggtcgggcacagtggcttacaccg
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                116586 96 + 192460366 GCTGGGGTGACAGGCATGAGCCACCATGACCAGCCTTGTCTGTCATTTTAGTTACTCAAAATCCATAATCTGggtcgggcacagtggcttacaccg
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                113746 96 - 187378091 GCTGgggtgacaggcatgagccaccgtgcccggccttgtctGTCATTTTAGTTACTCAAAATCCATAATCTGggtcaggcgtagtggctcacaccg
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               466105 96 -  91754291 GCTGGGGTGACAGGCATGAGCCACCATGCCCGGCCTTGTCTGTCATTTTAGTTACTCAAAATCCATAATCTGggtcgggcacagtggctcacacca
i chlSab2.chr15            C 0 C 0
e mm10.chr16                65465398 2011 -  98207768 I
e canFam3.chr33              2271210  0 -  31377067 I
e calJac3.chr17               976828 684 -  74750902 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120930412 1820 + 123690457 M
e panTro4.chr3             199813006 606 + 202329955 M

a score=41657.000000
s hg38.chr3_KI270935v1_alt    175716 35 +    197351 gtaatcccagcactttgggaggccaaggtaagcag
s rheMac3.chrUn_JH291127       85638 35 +    111706 ggaatcccagcactttgggaagccaaagtgggcag
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                116682 35 + 192460366 ggaatcccagcactttgggaagccaaagtgggcag
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                113842 35 - 187378091 ggaatcccaacactttgggaagccaaggtgggcag
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               466201 35 -  91754291 ggaatcccagcactttgggaggccaaggtgggcag
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               977512 35 -  74750902 gtaaacccagcactttgggaggctgaaatgggcag
i calJac3.chr17            I 684 C 0
e mm10.chr16                65465398 2011 -  98207768 I
e canFam3.chr33              2271210  0 -  31377067 I
e ponAbe2.chr3             199797169 30000 + 202140232 M
e nomLeu3.chr11            120930412 1820 + 123690457 M
e panTro4.chr3             199813006 606 + 202329955 M

a score=3822.000000
s hg38.chr3_KI270935v1_alt    175751 2 +    197351 at
s ponAbe2.chr3             199827205 2 + 202140232 at
i ponAbe2.chr3             M 30000 C 0
s rheMac3.chrUn_JH291127       85673 2 +    111706 at
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                116717 2 + 192460366 at
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                113877 2 - 187378091 at
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               466236 2 -  91754291 at
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               977547 2 -  74750902 at
i calJac3.chr17            C 0 C 0
e mm10.chr16                65465398 2011 -  98207768 I
e canFam3.chr33              2271210 0 -  31377067 I
e nomLeu3.chr11            120930412 1820 + 123690457 M
e panTro4.chr3             199813006 606 + 202329955 M

a score=281148.000000
s hg38.chr3_KI270935v1_alt    175753 123 +    197351 cacttgaggtcaggagttcgagactagcctgaccaacatggcaaaaccccatttctactaaaaatacaaaaatcagcagagcatggtggcatgtgcctgtgatcccagctactcggggggctg
s ponAbe2.chr3             199827207 123 + 202140232 cactggaggtcaggagttggagaatagcgtgaccaacatggcaaaaccccatttctactaaaaatacaaaaatcagcagagcatggtggcatgtgcctgtaatcccagctactcgggaggctg
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120932232 123 + 123690457 cactggaggtcaggagttggagactagcgtgaccagcagggcaaaaccccatttctactaaaaatacaaaaatcagcagagcatggtggcgtgtgtctgtaatcccagctactccagaggctg
i nomLeu3.chr11            M 1820 C 0
s rheMac3.chrUn_JH291127       85675 123 +    111706 cacttgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatttctactaaaaatacaaaaatcagcagagcatggtgccgtgtgcctgtaatcccagctactcgggaggccg
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                116719 123 + 192460366 cacttgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatttctactaaaaatacaaaaatcagcagagcatggtggcgtgtgcctgtaatcccagctactcgggaggccg
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                113879 123 - 187378091 cacttgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatttctactaaaaatacaaaaatcagcagagcatggtggcgtgtgcctgtaatcccagctactcgggaggccg
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               466238 120 -  91754291 cacttgaggtcaggagtttgagaccaccctggccaaca---tgaaaccccatttctactaaaaatacaaaaatcagcagagcatagtggcgtgtgcctgtaatcccagctactcgggaggctg
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               977549 123 -  74750902 cacttgaggtcaggagttcgagaccagcctgggcaacatggcgaaaccccatctctactaaaaatacaaaagttagcagagcatggtggtgcatgcatgtaatcccagccacttgggaggctg
i calJac3.chr17            C 0 C 0
e mm10.chr16                65465398 2011 -  98207768 I
e canFam3.chr33              2271210   0 -  31377067 I
e panTro4.chr3             199813006 606 + 202329955 M

a score=331434.000000
s hg38.chr3_KI270935v1_alt    175876 123 +    197351 aggcacgagaatcccttgaaccctggaggcagaggttgcagtgagccgagataacgccacagcacttcagcctgggtgacacagtgagactctgtctcaaaaatataaataaataaaataaca
s panTro4.chr3             199813618 123 + 202329955 aggcacaagaatcccttgaaccctggaggcaaaggttgcagtgagccgagataacgccatagcacttcagcctgggtgacacagtgagactctgtctcaaaaatataaataaataaaataaca
i panTro4.chr3             M 606 C 0
s ponAbe2.chr3             199827330 123 + 202140232 aggcatgataatctcttgaaccctggaggcagaggttgcagtgagccgagatcacgccactgcacttcagcctgggtgacacggtgagactctgtctcaaaaatataaataaataaaataaca
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120932355 121 + 123690457 aggcacgagaatctcttgaaccctggaggcggaggttgcagtgagccgagatcacgccactgcactccagcctgggtgacccagtgaga--ctgtctcaaaaatataaataaataaaataaca
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       85798 119 +    111706 aggcacaagaatctcttgaaccctggaggtggaggttgcggtgagccaagatcacgccactgccctcc--cctgggtgacacagtgaga--ctgtctcaaaaatataaataaataaaataaca
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                116842 119 + 192460366 aggcacaagaatctcttgaaccctggaggtggaggttgcggtgagccaagatcacgccactgccctcc--cctgggtgacacagtgaga--ctgtctcaaaaatataaataaataaaataaca
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                114002 119 - 187378091 aggcacaagaatctcttgaaccctggaggtggaggttgcggtgagctgagatcacgtcactgcactcc--cctgggtgacacagtgaga--ctgtctcaaaaatataaataaataaaataaca
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               466358 119 -  91754291 aggcacgagaatctcttgaaccctggaggcggaggttgcagtgagctgagatcacgccactgcactcc--cctgggtgacacagtgaga--ctgtctcaaaaatacaaataaataaaataaca
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               977672 117 -  74750902 aggcaggagaacctcttgaacctggaagccagaggttgcagtaagccaagatcacaccactgtactccagcctgggtgacacagtgact--ctgtctcaaaaatac----aaataaaatagaa
i calJac3.chr17            C 0 C 0
e mm10.chr16                65465398 2011 -  98207768 I
e canFam3.chr33              2271210   0 -  31377067 I

a score=1349116.000000
s hg38.chr3_KI270935v1_alt    175999 460 +    197351 taaaaTTCATAATCTATTCCACAGCTTGCAAAGCCCTGCGCGATCTAacacctgcct-tctctttcaagtcctccaaggggccaagctctttcctgcctctccatgagctccgcctctgcctgctcaggcctggcaccttctccacctggctgtcctcagc----------ctcaggc-------ctcagctccccgcagaacggttcctcacagggcccttcct-gactt-gtcagt-cagatgcacctcccctactctctggccattcgaaatgcagctctcagcacaccctgtacttttccacactgcatttaccacatgtgcagttgagaacatttccgtaattatttgatgtctgtctgcac-caagattttagtgccaagagactgggccacgtctgtttcactcttcactgtgtgcatccagtgctgtgtcctagaacaatgtcaggaacttaaggcaggcgtttcctaaatggt
s panTro4.chr3             199813741 460 + 202329955 taaaaTTCATAATCTATTCCACAGCTTGCAAAGCCCTGCGCGATCTAacacctgcct-tctctttcaagtcctccaaggggccaagctctttcctgcctctccatgagctccgcctctgcctgctcaggcctggcaccttctccacctggctgtcctcagc----------ctcaggc-------ctcagctccccgcacagcggttcctcacagggcccttcct-gactt-gtcagt-cagatgcacctcccctactctctggccattcgaaatgcagctctcaggacaccctgtacttttccacactgcatttaccacatgtgcagttgagaacatttctgtaattatttgatgtctgtctgcac-caagattttagtgccaagagactgggccacgtctgtttcactcttcactgtgtgcatccagtgctgtgtcctagaacaatgtcaggaacttaaggcaggcgtttcctaaatggt
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199827453 435 + 202140232 taaaaTTCATAATCTATTCCACAGCTTGCAAAGCCCTGCGCAATCTAACATCTGCCT-TCTGTTTCAAGCCCTCCAAGGGGCCAagctctttcctgcatctccgtgagctccgcctctgcctgctcaggcctggcaccttctccacctggcagtcctcagc----------ctcaggc-------ctcagctccccacacagcagttcctcgcaggggccttcct-gactt-gtcagt-cagatgcagctcccgtactctctggctattcaaaatgcagctctcagcacaccctgtacttttccacactgcatttaccacatgtgcagttgagaacatttctgtaattatttgatgtctgtctgcac-caagattttagtgccaagagactgggccacgtctgtttcact---------------------ctgtgtcctagaacaatgtcaggaacttaaggcag----ttcctaaatggt
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120932476 457 + 123690457 taaaaTTCATAATCTATTCCACAGCTTGCAAAGCCCTGTGCGATCTAacacttgtct-tctctttcaagtcctccaaggggccaagctctttcctgcctctccatgagctccgcctctgcctgctcaggcctggcactttctccacctggctgtcctcagc----------ctcaggc-------ctcagctccccgcacagcagttcctcacaggggccttcct-gact---tcagt-cagatgcagctcccgtactctctggccattcgaaatgcagctcttagcacaccctgtacttttccacactgcatttaccacatgtgcagttgagaacatttctgtaattatttgatgtctgtctgcac-caagattttagtgccaagagactgggccatgtctgtttcactcttcactgtgtgcatccagtgctgtgtcctagaacaatgtcaagaacttaaggcaggcgtttcctaaatag-
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       85917 457 +    111706 taaaaTTCATAATCTATTCCACAGCTTGCAAAGTCCTGTGCGATCTAACACCTGCCT-TCTCTTCCAAGCCTTCCCAGGGGCCAAGCTCTTTCCTGCCTCTCCATGAGCCCCGCCTCTGCCTGCTCAGGCCTGGCACTTTC-CCACCCAGCTGTCCTCAGC----------CTCAGGC-------CTCAGCTCCCCCCAGAGCCGTTCCTCACAGGGGCCTTCCT-GACTT-GTCAGT-CAGATGCAGTTCCCGTACTCTCTGGCCATTCAAAATGCAGCTCTCAG--CACCCTGAACTTTCCCACCCTGCATTTACCACATGTGCAGCTGGGAACatttctgtaattatttgatgtctgtctgcac-taagattttagtgccaagagactgggccacgtctgtttcattcttcactgtgtgcatccagtgctgtgtcctagaacaatgtcaggaacttaaggcaggcgtttcctaaacggc
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                116961 457 + 192460366 taaaaTTCATAATCTATTCCACAGCTTGCAAAGTCCTGTGCGATCTAACACCTGCCT-TCTCTTCCAAGCCTTCCCAGGGGCCAAGCTCTTTCCTGCCTCTCCATGAGCTCCGCCTCTGCCTGCTCAGGCCTGGCACTTTC-CCACCCAGCTGTCCTCAGC----------CTCAGGC-------CTCAGCTCCCCCCAGAGCCGTTCCTCACAGGGGCCTTCCT-GACTT-GTCAGT-CAGATGCAGTTCCCGTACTCTCTGGCCATTCAAAATGCAGCTCTCAG--CACCCTGAACTTTCCCACCCTGCATTTACCACATGTGCAGCTGGGAACatttctgtaattatttgatgtctgtctgcac-taagattttagtgccaagagactgggccacgtctgtttcattcttcactgtgtgcatccagtgctgtgtcctagaacaatgtcaggaacttaaggcaggcgtttcctaaacggc
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                114121 457 - 187378091 taaaattcataatCTATTCCACAGCTTGCAAAGTCCTGTGCGATCTAACACCTGCCT-TCTCTTCCAAGCCTTCCCAGGGGCTAAGCTCTTTCCTGCCTCTCCATGAGCTCCGCCTCTGCCTGCTCAGGCCTGGCACTTTC-CCACCCAGCTGTCCTCAGC----------CTCAGGC-------CTCAGCTCCCCCCACAGCAGTTCCTCACAGGGGCCTTCCT-GACTT-GTCAGT-CAGACGCAGTTCCTGTACTTTCTGGCCATTCAAAATGCAGCTGTCAG--CACCCTGAGCTTTCCCACCCTGCGTTTACCACATGTGCAGCTGGGAACATTTCTGTCATTATTTGATGTCTGTCTGCAC-CAAGATTTTAGCGCCAAGAGACTGGGCCACGTCTGTTTCATTCTTCACTGTGTGCATCCAGTGCTGTGTCCTAGAACAATGTCAGGAACTTAAGGCAGGCATTTCCTAAATggt
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               466477 457 -  91754291 taaaaTGCATAATCTATTCCAAAGCTTGCAAAGTCCTGTGCGATCTAACACCTGCCT-TCTCTTCCAAGCCTTCCCAGGGGCCAAGCTCTTTCCTGCCTCTCCATGAGCTCCACCTCTGCCTGCTCAGGCCTGGCACTTTC-CCACCCAGCTGCCCTCAGC----------CTCAGGC-------CTCAGCTCCCCCCACAGCAGTTCCTCACAGGGGCCTTCCT-GACTT-GTCAGT-CAGTTGCAGTTCCCGTACTCTCTGGCCATTCAAAATGCAGCTCTCAG--CACCCTGAACTTTCCCACCCTGCATTTACCACATGTGCAGCTGGGAACatttctgtaattatttgatgtctgtctgcac-caagattttagcgccaagagactgggccacgtctgtttcattcttcactgtgtgcatccagtgctgtgtcctagaacaatgtcaggaacttaaggcaggcgtttcctaaatggt
i chlSab2.chr15            C 0 I 237
s calJac3.chr17               977789 424 -  74750902 taaaaTCCGTAATCTATTCCACAGCTTGCAAGGCCCTGTACAATctcacacctgcct---------------------------gtctctttcctgcctctccatgtgctcctcctctgcctgctcaggcctggcgccttctccatctggctctcctcagc----------ctcaggc-------ctcactcaccgacacagcacct-ctcccagaggtcttcct-gactt-gtccatgcacatgcag-tcccctcctctgtag----tccaaatgcggcttcca---cctcctgcgcatttccacgctgcattttccacgtgtgcaggtgggaacatttctgtaattacttaatgtctgtctgccc-caggatttcagcgccgaaagactgggccacgtctgtttcattcttcactgtgcacattcagcac--tgtcccagaacaatgccagggactcaaggtaggcatttcctaaatggt
i calJac3.chr17            C 0 C 0
s canFam3.chr33             29107084 426 +  31377067 taaaacccacaatccgctccatggctcac-aggtcctgcgtgctctagcccgtgcctacctctctCAGATCCTTCCA--AGTCAAGccttctcccgcccctgtgca---tcttcccctgcct------ggctggtgcttct-tcactcccctgcccccatctggcttacaactcagccttctcctctcagctcaaagaaaagcacttggt--cagaggccctcctggacttcatgatc-taaatgaggtctccctatttt------------------actcttat--cagatt--acttgttca--atgcg-ataccacatttgtagatgggaatttgtctgtaattattttatgtctttctgcgtattagatcttagctccacgaggctgggccctgtcagttccgtccctcactgtgtacacacagtgc--tgctctagaacaatgt-------------tgggcgctccttaaatagt
i canFam3.chr33            I 1884 C 0
e mm10.chr16                65465398 2011 -  98207768 I

a score=6615.000000
s hg38.chr3_KI270935v1_alt    176459 5 +    197351 ggttt
s panTro4.chr3             199814201 5 + 202329955 ggttt
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199827888 5 + 202140232 tgttt
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120932933 2 + 123690457 ---tt
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       86374 5 +    111706 tgttT
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                117418 5 + 192460366 tgttT
i macFas5.chr2             C 0 I 128
s papAnu2.chr2                114578 5 - 187378091 tgttt
i papAnu2.chr2             C 0 C 0
s canFam3.chr33             29107510 2 +  31377067 ---tt
i canFam3.chr33            C 0 C 0
e mm10.chr16                65465398 2011 -  98207768 I
e calJac3.chr17               978213 0 -  74750902 C
e chlSab2.chr15               466934 237 -  91754291 I

a score=6209.000000
s hg38.chr3_KI270935v1_alt    176464 3 +    197351 aat
s panTro4.chr3             199814206 3 + 202329955 aat
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199827893 3 + 202140232 aat
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120932935 3 + 123690457 aat
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       86379 3 +    111706 aat
i rheMac3.chrUn_JH291127   C 0 I 105
s macFas5.chr2                117551 3 + 192460366 aat
i macFas5.chr2             I 128 I 1
s papAnu2.chr2                114583 3 - 187378091 aat
i papAnu2.chr2             C 0 I 1
s canFam3.chr33             29107512 3 +  31377067 AAG
i canFam3.chr33            C 0 C 0
e mm10.chr16                65465398 2011 -  98207768 I
e calJac3.chr17               978213 0 -  74750902 C
e chlSab2.chr15               466934 237 -  91754291 I

a score=1365.000000
s hg38.chr3_KI270935v1_alt    176467 1 +    197351 t
s panTro4.chr3             199814209 1 + 202329955 t
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199827896 1 + 202140232 t
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120932938 1 + 123690457 t
i nomLeu3.chr11            C 0 C 0
s calJac3.chr17               978213 1 -  74750902 t
i calJac3.chr17            C 0 C 0
s canFam3.chr33             29107515 1 +  31377067 T
i canFam3.chr33            C 0 C 0
e rheMac3.chrUn_JH291127       86382 105 +    111706 I
e mm10.chr16                65465398 2011 -  98207768 I
e chlSab2.chr15               466934 237 -  91754291 I
e macFas5.chr2                117554 1 + 192460366 I
e papAnu2.chr2                114586 1 - 187378091 I

a score=8657.000000
s hg38.chr3_KI270935v1_alt    176468 4 +    197351 aaca
s panTro4.chr3             199814210 4 + 202329955 aaCA
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199827897 4 + 202140232 aaCA
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120932939 4 + 123690457 aacg
i nomLeu3.chr11            C 0 C 0
s macFas5.chr2                117555 4 + 192460366 aatg
i macFas5.chr2             I 1 C 0
s papAnu2.chr2                114587 4 - 187378091 aatg
i papAnu2.chr2             I 1 I 60
s chlSab2.chr15               467171 4 -  91754291 aacg
i chlSab2.chr15            I 237 C 0
s calJac3.chr17               978214 4 -  74750902 aata
i calJac3.chr17            C 0 I 8
s canFam3.chr33             29107516 4 +  31377067 AACA
i canFam3.chr33            C 0 I 36
e rheMac3.chrUn_JH291127       86382 105 +    111706 I
e mm10.chr16                65465398 2011 -  98207768 I

a score=393228.000000
s hg38.chr3_KI270935v1_alt    176472 124 +    197351 aatGAATGAATGAATG----------------GCTGTCTCAGCAGGGTGTGTGAATGCTTCTGTTCTTCCCTCCGTCGGTGGGCTGGGCTGGTTTGGAGATTGCCGAAAGGCTGTGTGCTGCAGT------------------gagtcaggagacctg
s panTro4.chr3             199814214 136 + 202329955 aatgaatgaatgaatg----aatgaatgaatgGCTGTCTCAGCAGGGCGTGTGAATGCTTCTGTTCTTCCCTCCATCGGTGGGTTGGGCTGGTTTGGAGATTGCCGAAAGGCTGTGTGCTGCAGT------------------gagtcaggagacctg
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199827901 132 + 202140232 aatgaatgaatgaatg--------aatgaatgGCGGTCTCAGCAGGGTGTGTGAATGCTTCTGTTCTTCCCTCCATTGGTGGGCTGGGCTGGTTTGGAGACTGCCGAAAGGCTGTGTGCTGCAGT------------------gggtcaggagacctg
i ponAbe2.chr3             C 0 I 228
s nomLeu3.chr11            120932943 136 + 123690457 aatgaatgaataaatg----aatgaatgaatgGCTGTCTCAGCAGGGTGTGTGAATGCTTCTGTTCTTCCCTCCATCGGTGGGCTGGGCTGGTTTGGAGATTGCCAAAAGGTTGTGTGCTGCAGT------------------gagtcaggagacctg
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       86487 124 +    111706 aatgaatgaatgaatg----------------aCTGTCTCAGCAGCGTGTGTGAATGCTTCTGTTCTTCCCTCCATTGGTGGGCTGGGCTGGTTTGGAGATTGCTGACAGGCTCCGTGCTGCAGT------------------gaggcaggagacctg
i rheMac3.chrUn_JH291127   I 105 C 0
s macFas5.chr2                117559 124 + 192460366 aatgaatgaatgaatg----------------GCTGTCTCAGCAGCGTGTGTGAATGCTTCTGTTCTTCCCTCCATTGGTGGGCTGGGCTGGTTTGGAGATTGCTGACAGGCTCCGTGCTGCAGT------------------gaggcaggagacctg
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                114651 123 - 187378091 aatgaatgaatgaatg----------------gctgtcTCAGCAGCGTGTGTGAATGCTTCTGTTCTTCCCTCCATTGGTGGGCTGGGCTGGTTTGGAGA-TGCTGAAAGGCTCCGTGCTGCAGT------------------GAGGCAGGAGACCTG
i papAnu2.chr2             I 60 C 0
s chlSab2.chr15               467175 123 -  91754291 aatgaatgaatgaatg----------------GCTGTCTCCGCAGTGTGTGTGAATGCTTCTGTTCTTCCCTCCATTGGTGGGCTGGGCTGGTTTGGAGA-TGCTGAAAGGCTCCGTGCTGCAGT------------------gaggcaggagacctg
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               978226 140 -  74750902 aatGAATGCATGAGTGACGGAATGAATGAATGACTGTCTCAGCAGGGTGTGTGAGTGCTTCTGTTCTTCCCTCCACTGGTGGGCTGGGCTGGTTTGGAGATTGCTGGAAGGTTGTgtgctgcact------------------gagtcaggagacctg
i calJac3.chr17            I 8 C 0
s canFam3.chr33             29107556 131 +  31377067 aatggatggatgaatg----------------aatATCTCAACAGGGT-TGCAAGCGCTTCTATTCCTCC--TCATTGATGGGCTGTGCTGGTATG--------TAAACAGTTTtgtaatgtggtgcaaacccagtaaatgaggagtcaggaaatttg
i canFam3.chr33            I 36 C 0
e mm10.chr16                65465398 2011 -  98207768 I

a score=804069.000000
s hg38.chr3_KI270935v1_alt    176596 243 +    197351 ggttctagtcccagctgcctcacttatgggttctatgatcttaaacaagtcacttaacttagagagctttgaaaagcaggaac----tgtgacgcattcatcttcctgtccagagcagctggcatgagtagaaattctgcaagtgAATGAACAACTCCAAAGTCTAGGCTGTTTCTTATTCCAAATTCCCCCAAAATCCACTGGCCACTGGACTTTTGGAACCTAAAC-----TGCAACCTGGGCGGGGCGG
s panTro4.chr3             199814350 243 + 202329955 ggttctagtcccagctgcctcacttatgggttctatgatcttaaacaagtcacttaacttagagagctttgaaaagcaggaac----tgtgacgcattcatcttcctgtccagagcagctggcatgagtagaaattctgcaagtgAATGAACAACTCCAAAGTCTAGGCTGTTTCTTATTCCAAATTCCCCCAAAATCCACTGGCCACTGGACTTTTGGAACCTAAAC-----TGCAACCTGGGTGGGGCGG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199828261 243 + 202140232 ggttctagtcccagctgcctcacttatgggttctatgaccttaaacaagtcacttaacttagagagctttgaaaagcaggaac----tgtgacgtgttcatcttcctgtccagagcagctggcatgagtaggaattctgcaagtgAATGAACAACTCCAAAGTCTAGGCTGTTTCTTATTCCAAATTCCCCCAAAATCCACTGGCAACTGGACTTTTGGAACCTAAAC-----TGCAACCTGGGCGGGGCGG
i ponAbe2.chr3             I 228 C 0
s nomLeu3.chr11            120933079 243 + 123690457 ggttctagtcccagctgcctcacttatgggttctatgaccttaaacaagtcacttaacttagagagctttgaaaagcaggaac----tgtgacgtattcgtcttcgtgtccagagcagctggcatgagcagaaattctgcaagtgAATGAACAACTCCAAAGTCTAGGCTGTTTATTATTCCAAATTCCCCCAAAATCCACTGGCAACTGGACTTTTGGAACCTAAAC-----TGCAACCTGGGCGGGGCAG
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       86611 243 +    111706 ggatctagtcccagctgcctcacttacgggttctatgaccttaaacgagtcacttcacttagagagctttgaaaagcaggaac----cgtgaccgattcatcttcctgtccagagctgctggcatgagtagaaattctgcaagtgAATGAACAACTCCAAAGGCTAGGCTCCTTCTTATTCCAAATTCCCCCAAAATCCACTGGCAACTGGACTTTTGGAACCCAAAC-----TGCAACCTGGGTGGGGGCG
i rheMac3.chrUn_JH291127   C 0 I 1
s macFas5.chr2                117683 242 + 192460366 ggatctagtcccagctgcctcacttacgggttctatgaccttaaacgagtcacttcacttagagagctttgaaaagcaggaac----cgtgatggattcatcttcctgtccagagctgctggcatgagtagaaattctgcaagtgAATGAACAACTCCAAAGGCTAGGCTCCTTCTTATTCCAAATTCCCCCAAAATCCACTGGCAACTGGACTTTTGGAACCCAAAC-----TGCAACCT-GGTGGGGGCG
i macFas5.chr2             C 0 I 1
s papAnu2.chr2                114774 242 - 187378091 GGATCTAGTCCCAGCTGCCTCACTTACAGGTTCTATGACCTTAAACAAGTCACTTAACTTAGAGAGCTTTGAAAAGCAGGAAC----CGTGAC-GATTCATCTTCCTGTCCAGAGCAGCTGGCATAAGTAGAAATTCTGCAAGTGAATGAACAACTCCAAAGGCTAGGCTCCTTCTTATTCCAAATTCCCCCAAAATCCACTGGCAACTGGACTTTTGGAACCCAAAC-----TGCAACCTGGGTGGGGGCG
i papAnu2.chr2             C 0 I 1
s chlSab2.chr15               467298 243 -  91754291 ggatctagtcccagctgcctcacttacgggttctatgaccttaaatgagtcacttcacttagagagctttgaaaagcaggaac----cgtgacggattcatcttcctgtccagagcagctggcatgagtagaaattctgcaagtgAATGAACAACTCCAAAGGCTAGGCTCCTTCTTATTCCAAATTCCCCCAGAATCCACTGGCAATTGGACTTTTGGAACCCAAAC-----TGCAACCTGGGTGGGGGTG
i chlSab2.chr15            C 0 I 49
s calJac3.chr17               978366 247 -  74750902 gattctagtcccagctgcctcacttatgggtcctatgaccttaaacaagtcccttaacttagagagctttgaaaagcaggaac----catgacttagtcatgttcgtgtgcagagcagctggcatgagtagAAATTCTGCAAGCAAATGAATAACTCTAAAGTCTAGGCTCTTTCTTGTTCCAAATTCCCCC-GAACCCACTGGCAACTGGACTCTTGGAACCCAAACTGCGGTGCAACCTGGGCGGGGTAG
i calJac3.chr17            C 0 I 3
s canFam3.chr33             29107687 220 +  31377067 gattctagtcccagttgccctacttactggccgtgtgacct-----------------ttaaaaagctttg-gaggcaggaacgacacatgacttattcatctttgtgtctagaacgtttggcatgagtagaagttcaacaagtggatgaacaactgCAAAATCT-------TTCCTACCCTGAGGT-CCCCAAAGCCCATTGCCAACAGGACTTTTGGGACTCAAAC-----TGCTATTTTAGTCGGGAG-
i canFam3.chr33            C 0 C 0
e mm10.chr16                65465398 2011 -  98207768 I

a score=82239.000000
s hg38.chr3_KI270935v1_alt    176839 53 +    197351 CATCTCTACAGAGAGTCGATGTCTGTCCTCTGTGGTCCCTAAACACAT--ACACG
s panTro4.chr3             199814593 53 + 202329955 CATCTCTACAGAGAGTCGATGTCTGTCCTCTGTGGTCCCTAAACACAC--ATACG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199828504 51 + 202140232 CATCTCTACAGAGAGTCGATGTCTG----CTGCGGTCCCTAAACACACATACACG
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120933322 51 + 123690457 CATCTCTACAGAGAGTCGATGTCCG----CTGCGGTCCCTAAACACACACACACG
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       86855 46 +    111706 --TATCCACAGAGAGTCCATGT-TG----CTGCGGTTCCTAAACACGC--ATACG
i rheMac3.chrUn_JH291127   I 1 I 2
s macFas5.chr2                117926 46 + 192460366 --TATCCACAGAGAGTCCATGT-TG----CTGCGGTTCCTAAACACGC--ACACG
i macFas5.chr2             I 1 I 2
s papAnu2.chr2                115017 46 - 187378091 --TATCCACAGAGAGTCCATGT-TG----CTGCGGTTCCTAAACACGC--ACACG
i papAnu2.chr2             I 1 I 2
s calJac3.chr17               978616 48 -  74750902 TATCTACACAGAGAGGAGATGTCT-----CCTTGGTCCTTAAATGTGC--ACACG
i calJac3.chr17            I 3 I 538
s canFam3.chr33             29107907 46 +  31377067 --CATATAGAGAGAGAGGATATCT-----ATGCAGACCTTAAAAGCAC--ACACT
i canFam3.chr33            C 0 C 0
e mm10.chr16                65465398 2011 -  98207768 I
e chlSab2.chr15               467541 49 -  91754291 I

a score=468510.000000
s hg38.chr3_KI270935v1_alt    176892 152 +    197351 GGGAGTGGAGCTGCGGGCAACCCAGGCCAGTGCCCTTCCTCCA--------AGCAGGGCCGCCATTGCAA-GGCCTCACGTGCA-ACACAAATGCCCAGTTCCTGAGACTTCTTCAGAGTCTCCAGGAAAAGGGTGAAAAGGCATTTAAACCTCTATGAAGT
s panTro4.chr3             199814646 152 + 202329955 GGGAGTGGAGCTGCCGGCAACCCAGGCCAGTGCCCTTCCTCCA--------AGCAGGGCTGCCATTGCAA-GGCCTCATGTGCA-ACACAAATGCCCAGTTCCTGAGACTTCTTCAGAGTCTCCAGGAAAAGGGTGAAAAGGCATTTAAACCTCTATGAAGT
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199828555 152 + 202140232 GGGAGTGGAGCTGCTGGCAACTCAGGCCAGTGCCCTTTCTCCG--------AGCAGGGCTGCCATTGCAG-GGCCTCATGTGCA-ACACAAATGCCCAGTTCCTGAGGCCTCTTCAGAGTCTCCAGGAAAAGGGTGAAAAGGCATTTAAACCTCTATGAGGT
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120933373 152 + 123690457 GGGAGTGGAGCTGCCGGCAACACAGGCCAGTGCCCCTCCTCCG--------AGCAGGGCCACCGTTGCAG-GGCCTCATGTGCA-ACACAAATGCCCGTTTCCTGAGGCCTCTTCAGAGTCTCCAGGAAAAGGGTGAAAAGGCATTTAAACCTCTATGAAGT
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       86903 159 +    111706 GGGAGTGGAGCTGCCGGCAACACA-GCCAGTGCCCTTCCTCCTGTCCTCCCAGCAGGCGTGCCACTGCAG-GGCCTCATGTGCA-ACACCAATGCCCAGTTCCTGAGGCCTCTTCAGAGTCTCAAGGAGAAGGGCGAAAAGGCATTTCAACCTCTATGAAGT
i rheMac3.chrUn_JH291127   I 2 C 0
s macFas5.chr2                117974 159 + 192460366 GGGAGTGGAGCTGCCGGCAACACA-GCCAGTGCCCTTCCTCCTGTCCTCCCAGCAGGCGTGCCACTGCAG-GGCCTCATGTGCA-ACACCAATGCCCAGTTCCTGAGGCCTCTTCAGAGTCTCAAGGAGAAGGGCGAAAAGGCATTTCAACCTCTATGAAGT
i macFas5.chr2             I 2 C 0
s papAnu2.chr2                115065 159 - 187378091 GGGAGTGGAGCTGCCGGCAACACA-GCCAGTGCCCTTCCTCCTGTCCTCCCAGCAGGCGTGCCACTGCAG-GGCCTCGTGTGCA-ACACCAATGCCCagttcctgaggcctcttcagaGTCTCAAGGAGAAGGGCAAAAAGGCATTTCAACCTCTATGaagt
i papAnu2.chr2             I 2 C 0
s chlSab2.chr15               467590 159 -  91754291 GGGAGTGGAGCTGCCGGCAACACA-GCCAGTGCCCTTCCTCCTGTCCTCCCAGCAGGGCTGCCACTGCAG-GGCCTCATGTGCA-ACACCAATGCCCAGTTCCTGAGGCCTCTTCAGAGTCTCAAGGAGAAGGGCGAAAAGGCATTTCAACCTCTATGAAGT
i chlSab2.chr15            I 49 C 0
s calJac3.chr17               979202 151 -  74750902 GGGGACGGAGCTGCCTGCAACACAGGCCAGTGCCCTTCCTCTG--------AGCAGGGCTGCCGCGGCAG-GGCCTCACGTACA-ACACAAATGCCT-GTTCCTGAGGCCTCTTCAGAGTCTCAAGGGAAGGGGTGGAAAAGTATTTAAACCTCTATGGAGC
i calJac3.chr17            I 538 C 0
s canFam3.chr33             29107953 134 +  31377067 ----------------GGAACGTAAGCCAGGGCCCTCTGTTTG--------AGCAGGGCCACGATTGTAGAGGCCTCATGCACATGCACAGACCCCCAGTTCCCGGGGCCTCTTCAGAGTCTCAAGGAAGATGCC----AAGCATCTGGACCCCTACAAAGT
i canFam3.chr33            C 0 I 312
e mm10.chr16                65465398 2011 -  98207768 I

a score=889537.000000
s hg38.chr3_KI270935v1_alt    177044 358 +    197351 AGggccaggcacagtagctcacgcctataatcccagcactttggga-gccgaggcgagcggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaacattagcc-gctgtggtgttgggcgtctataatcccagctactcgggaggctgaggcaggagaatctcttgaacccgggaggcagaggctgcactgagctgagaccacgccactgcactgcagcctgggggacagagagaaactctgtctcaaaaaacaa----acaaacaaaccc--aaaaaaCcaacaacaacagcaacaataaaaaaa-cCGTCTATGAAGAAATCGTCGA
s panTro4.chr3             199814798 359 + 202329955 AGggccaggcacagtagctcacgtctataatcccagcactttggga-gccgaggcgagcggctcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaacattagct-gctgtggtgttgggcgtctgtaatcccagctactcgggaggctgtggcaggagaatctcttgaacccgggaggcggaggctgcagtgagctgagatcacaccactgcactgcagcctgggggacagagagaaactctgtctcaaaaaacaa----acaaacaaaccc--aaaaaaCCAGCAACAACAGCAACAACAAAAAAAACCGTCTATGAAGAAATCGTCTA
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199828707 352 + 202140232 AGggccgggcgcagtagctcacgcctataaccccaacactttcgga-gccgaggcgagcggatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaagccccatctctactaaaaatacaaacattagcc-actgtggtgttgggcatctgcaatcccagctactcgggaggctgaggcaggagaatctcttgaacccgggaggcagaggctgcagtgagctgagatcgtgccactgcactccagcctgggggacagagagaaactctgtctcagaaaacaa----acaaacaaaccc--aaaaaaCCATCAA------CAACCACAAAAAAA-CCGTCTATGAAGAAACCGTCTA
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120933525 345 + 123690457 AGggccgggcgcagtagctcacgcctataatcccagcactttggga-gccgaggcaagcgaatcacttgaggtcaggagtttgagaccagcctggccaacatggtgaagccccatctctactaaaaatacaaacattagcc-gctgtggtggcgtgcgtctgcaatcccagctactcgggaggctgaggcaggagaatctcttgaatccgggaggcagaggctgcagtgagctgatatcgcgccactgcactccagcctggata--agagagaaactctgtctcaaaaaacaa----acaaacaaaccc--aaaaaaCCAACAA------CACC-----AAAAA-CCGTCTATGAAGAAACTGTCTA
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       87062 329 +    111706 AGggccgggtgcagtggctcacacctgtaaccccagcactttggga-gctgaggcgggtagatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatctctactgaaaatacaaaaattagct-gctgtggtagtgggcgcctgcaatcccagctactcgggagtctgaggcaggagaatctcttgaacccaggaggcggaggctgcagtgagctgagatcacaccattgcactccagcctgggtgacagagtgagactctgtctcaaa----aa----acaaacaaaTCC--ATAAAACCAACAA------CAAC-----AAAAA---------------ACCGTCTA
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                118133 329 + 192460366 AGggccgggtgcagtggctcacacctgtaatcccagcactttggga-gctgaggcgggtagatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatctctactgaaaatacaaaaattagct-gctgtggtggtgggcgcctgcaatcccagctactcgggagtctgaggcaggagaatctcttgaacccgggaggcggaggctgcagtgagctgagatcacaccattgcactccagcctgggtgacagagtgagactctgtctcaaa----aa----acaaacaaaTCC--ATAAAACCAACAA------CAAC-----AAAAA---------------ACCGTCTA
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                115224 329 - 187378091 agggccgggcgcagtggctcacacctgtaatcccagcactttgggaggccaaggtgggtggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctactgaaaatacaaaaattagct-gctgtggtggtgggtgcctgcaatcccagctactcaggagtctgaggcaggagaatctcttaaacccgggaggcagaggctgcagtgagctgagatcacaccacttcactccagcctgggtgacagagcgagactctgtctc-aa----aa----acaaacaaatcc--ataaaaccaacaa------caac-----aaaaa---------------accgtCTA
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               467749 326 -  91754291 AGggccaggcgcagtggctcacacctgtaatcccagcactttggga-gccgaggcgggtggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatgcaaaaattaact-gctgtggtggtgggcgcctgcaatcccagctactcaggagtctgaggcgggagaatctcttgaacccgggaggcggaggttgcagtgagctgagatcacaccacttcactccagcctgggtgacagagcgagactctgtctcaaa----aa----acaaacaaatcc--ataaaac---caa------caac-----aaaaa---------------aCCGTCTA
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               979353 340 -  74750902 AGggccggatgccatggcccacgcctgtcattccagctctctggga-actgaggtgggcagatcacttgaggccaggagtttgagaccagcctgaccaacatggtgaaaccccatctctaccaacaatacaaaaattagccaggcatggtggtgggtgcctgtaaccccagctactcgggagaccgaggcaggagcgtcacgtgaacccgggaggcggaggctgcagtgagccgagatcacgccactgtactccagcctgggcaacagagtgagactctgtctcaataaacaaTCACACATACAAACCCCAAAACAAGCAGCAA------CAAC-----AACTA---------------AACCCCTA
i calJac3.chr17            C 0 C 0
e mm10.chr16                65465398 2011 -  98207768 I
e canFam3.chr33             29108087 312 +  31377067 I

a score=159411.000000
s hg38.chr3_KI270935v1_alt    177402 55 +    197351 TGAGGTGCCAACAGACTCAGTT-A-TTTTGACTCAATTTCTCAGAA-CATGCTGGGGC
s panTro4.chr3             199815157 55 + 202329955 TGAGGTGCCAACAGACTCAGTT-A-TTTTGACTCAATTTCTCAGAA-CATGCTGGGGC
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199829059 57 + 202140232 TGAAGTGCCAATAGACTCAGTT-ATTTTTGACTCATTTCCTCAGAACCATGCTGGGGC
i ponAbe2.chr3             C 0 M 6447
s nomLeu3.chr11            120933870 55 + 123690457 TGAAGTGCCAACAGACTCACTT-A-TTTTGACTCAATTTCTCAGAA-CATGCTGGGGC
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       87391 55 +    111706 TGAAGTGCCAACAGATTCAGTT-A-TTTTGACTCAATTTCTCAGAA-CACGCTGGGGC
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                118462 55 + 192460366 TGAAGTGCCAACAGATTCAGTT-A-TTTTGACTCAATTTCTCAGAA-CACGCTGGGGC
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                115553 55 - 187378091 TGAAGTGCCAACAGATTCAGTT-A-TTTTGACTCAATTTCTCAGAA-CACGCTGGGGC
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               468075 55 -  91754291 TCAAGTGCCAACAGATTCAGTT-A-TTTTGACTCAATTTCTCAGAA-CACGCTGGGGC
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               979693 52 -  74750902 TTAAGTGCCAACAGATTCAGTTCA-CTTTGAC----TTCCTCGGAA-CGTGCTGGGGC
i calJac3.chr17            C 0 C 0
s mm10.chr16                65467409 55 -  98207768 TGAGGTGCCGACAAATCACACT-C-GTTTGGAGCAGCAACTGAGTA-GACGCTAGAGA
i mm10.chr16               I 2011 C 0
e canFam3.chr33             29108087 312 +  31377067 I

a score=67888.000000
s hg38.chr3_KI270935v1_alt    177457 36 +    197351 ----GGGAACTCAGCCTAGCAGTAAGAAAGACGTATATTT
s panTro4.chr3             199815212 36 + 202329955 ----ATGAACTCAGCCTAGCAGAAAGAAAGACATATATTT
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120933925 36 + 123690457 ----ATGAACTTAGCCTAGTAGAAAGAAAGATGTATATTT
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       87446 32 +    111706 ----ATGAACTCAGCCTAGT----AGAAATATGTATATTT
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                118517 32 + 192460366 ----ATGAACTCAGCCTAGT----AGAAATATGTATATTT
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                115608 32 - 187378091 ----ATGAACTCAGCCTAgt----agaaatatgtatattt
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               468130 32 -  91754291 ----ATGAACTCAGCCTAGT----AGAAATATGTATATTT
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               979745 32 -  74750902 ----GTGAGCTCAGCCTAAT----AGAAGGATGTATGTTT
i calJac3.chr17            C 0 C 0
s mm10.chr16                65467464 35 -  98207768 AAGGATGAGCTGAGCCGAAC----AGAAAGACCCAT-CTT
i mm10.chr16               C 0 C 0
e canFam3.chr33             29108087 312 +  31377067 I
e ponAbe2.chr3             199829116 6447 + 202140232 M

a score=1265368.000000
s hg38.chr3_KI270935v1_alt    177493 576 +    197351 AAGGTAAAAGGCT--GAAACTAGGGGGAGAGAGAGCCTATAAGGTCTCTGTCCTGGCCTTCAGAGAAGTGGCTCTGTGAGCTACACGATGTGCATATTTTAAGCACTTAACAGCACCGTGAAATCAGAGAA--------AAGACACAGAGTAGCAAA-ACCACCCG-TT-GAGCGTACAAAAGGCCAACCA---CTTCTTGTCCTCTCATTGCCTCTTGTCCTTAGCAATGAAGACACAAATCACTTGCGTGTCAAGCACT-GCCAGGCCAGCCTCTGCCAGGCCAGCCTCTGCCTCCACGGCTGAGCCCAGAAACCAAGGGCGTGGCGGG----ACTCACAGGCAGGG--AGCGGTGAGGCAGAGCTGTCCGCTGGAGCGAGCCCCTGCTCTAGG----GCCA------TGGCCCTC-GGGGTCCGTTCATGCAGCAAGCCACATTCTGAATACACCAAGCCAGCCCTTGCAAACCCACAGGAAGCA-CGGGGTGGCTTTTTAGAGGCACGAGGATCCTTAGATGAAGGGATATGAC-CCTGGGCCGACACAAG------TGCCATTCCGGGTTCAATCACCCTCCTTCCCCCGTCTTCCCAGGCCTCTTTCTCAAA
s panTro4.chr3             199815248 560 + 202329955 AAGGTAAAAGGCT--GAAACTAGGGGGAGAGAGAGCCTATAAGGTCTCTGTCCTGGCCTTCAGAGAAGTGGCTCTGTGAGCTACACGATGTGCATATTT-AAGCATTTAACAGCACCGTGAAATCAGAGAA--------AAGACACAGTGTAGCAAA-ACCACCCG-TT-GAGCATACAAAAGGCCAACCA---CTTCTTGTCCTCTCATTGCCTCTTGTCCTTAGCAATGAAGACACAAATCACTTGCGTGTCAAGCACT-GCCAGGCCAGCCTCTGCC---------------TCCACGGCTGAGCCCAGAAACCAAGGGCGTGGCGGG----ACTCACAGGCAGGG--AGCGGTGAGGCAGAGCTGTCCGCTGGAGCGAGCCCCTGCTCTAGG----GCCA------TGGCCCTC-GGGGTCCGTTCATGCAACAAGCCACATTCTGAATACACCAAGCCAGCCCTTGCAAACCCACAGGAAGCA-CAGGGTGGCTTTTTAGAGGCACGAGGATCCTTAGATGAAGGGAGATGAC-CCTGGGCCGACACAAG------TGCCATTCCGGGTTCAATCACCCTCCTTCCCCCGTCTTCCCAGGCCTCTTTCTCAAA
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120933961 585 + 123690457 AAGGTAAAAAGTTGAGAAACTGGGGGGAGAGAGAGCCTATAGGGTCTCTGTCCTGGCCTTCAGAGAAGTGGCTGTGTGAGCTACACGATGTGCATATTTTAAGCATTTAACAGCACGGCGAAATCAGAGAA--------AAGACACA--GTAGCAAA-ACCACCCG-TT-GAGCATACAAAAGGCCAACCACTTCTTCTTGTCCTCTCATTGCCTCTTGTCCTTGGCAATGAAGACACAAATCACTTGCGTGTCAAGCATT-GCCAGGCCAGCCTCTGCCAGGCCAGCCTCTGCCTCCATGGCCAAGCCCAGAAACCAAGGGCATGGGGGG----ACTCACAGGCAGGG--AGCGGTGAGACAGAGCCGTCCGCTGGAGCGAGCCCCTGCTCTAGG----GCCA------TGGCCCTC-AGGGTCCTTTCATGCAATAAGCCACATTCTGAATATACCAAGCCAGCCCTTGCAAACCCACAGGAAGCA-CAGGGTGGCTTTTTAGAGGCACGAGGATCCTTAGATGAAGGGATATGAC-CCTGGGCCGACACAAGTGTTCATGCCATTCTGGGTTCCATCACCCTCCTTCCCCCATCTTCCCAGGCCTCTCTCTCAGA
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       87478 550 +    111706 AAGGTAAAAGGTT--GAAACTAGGGGGAGAGAGAGCCTAAAAGGTCCCTGTCCAGGCCTTCAGAGAA---GCTCTGGGAACTACATGATGTGCACATTTTGAGCATTTAACGGCACCGTGACACCAGAGGA--------CAGACTCA--GGAGCAAA-ACCACCCG-CT-GAGCACACAGAGGTCCAGCCG---CTTTGTGTCCTCT--------------CTTGGCAATGAAGACACAAACCACTTGCGTGTCAAGCGTT-GCCAGGCCAGCCTCGGTC---------------TCCACAGCTGAGCCCAGAAACCAAGGGCATGGCGGG----ACTCACAGGCAGGG--AGCGGTGAGGCAGAGCCGTCTGCTGGAGCGAG-CCCTGCTCTGGG----GCCACG--ACTGGCACTC-GGGGTCCCTTCGTGCAATAAGCCATGTTCTGAATACACCACGCCAGCCCCTGCAAACCCACAGGAAGCA-CAGGGTGGCTTTTTAGAGGCATGAGGATCCTTACATGAAAGGACGTCAC-CCTGGGCCGACACCAGTGCCCATGCCATTCCGGGTTCCGTCACCCTCCTT-CCCCTTCTTCCCAGGCCTCTCTCTCAAA
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                118549 551 + 192460366 AAGGTAAAAGGTT--GAAACTAGGGGGAGAGAGAGCCTAAAAGGTCCCTGTCCAGGCCTTCAGAGAA---GCTCTGGGAACTACATGATGTGCACATTTTGAGCATTTAACGGCACCGTGACACCAGAGGA--------CAGACTCA--GGAGCAAA-ACCACCCG-CT-GAGCACACAGAGGTCCAGCCG---CTTCGTGTCCTCT--------------CTTGGCAATGAAGACACAAACCACTTGCGTGTCGAGCGTT-GCCAGGCCAGCCTCGGTC---------------TCCACAGCTGAGCCCAGAAACCAAGGGTGTGGCGGG----ACTCACAGGCAGGG--AGCGGTGAGGCAGAGCCGTCTGCTGGAGTGAG-CCCTGCTCTCGG----GCCACG--ACTGGCACTC-GGGGTCCCTTCGTGCAATAAGCCACGTTCTGAATACACCACACCAGCCCCTGCAAACCCACAGGAAGCA-CAGGGTGGCTTTTTAGAGGCACGAGGATCCTTACATGAAAGGACGTCAC-CCTGGGCCGACACCAGTGCCCATGCCATTCCGGGTTCCGTCACCCTCCTTCCCCCTTCTTCCCAGGCCTCTCTCTCAAA
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                115640 550 - 187378091 aaggtaAAAGGTT--GAAACTAGGGGGAGAGAGAGTCTAAAAGGTCCCTGTCCAGGCCTTCAGAGAA---GCTCTGGGAACTACATCATGTGCATATTTTGAGCATTTAACGGCACCGTGACACCAGAGGA--------CAGACTCA--GGAGCAAA-ACCACGCG-CT-GAGCACACAGAGGTCCAGCCG---CTTCATGTCCTCT--------------CTTGGCAATGAAGACACAAACCACTTGCGTGTTAAGCGTT-GCCAGGCCAGCCTTGGTC---------------TCCACAGCTGAGCCCAGAAACCAAGGGCGTGGCGGG----ACTCACAGGCAGGG--AGCGGTGAGGCAGAGCCGTCTGCTGGAGCGAG-CCCTGCTCTGGG----GCCACG--ACTGGCACTC-GGGGTCCCTTCGTGCAATAAGCCACGTTCTGAATACACCACGTCAGCCCTTGCAAACCCACAGGAAGCA-CAGGGTGGCTTTTTAGAGGCACAAGGATCCTTACATGAAAGGATGTCAC-CCTGGGCCGACACCAGTGCCCATGCCATTCCGGGTTCCGtcaccctccct-ccccttcttcccaGGCCTCTCTCTCAAA
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               468162 554 -  91754291 AAGGTAAAAGGTT--GAAACTGGGGGGAGAGAGAGCCTAAAAGGTCCCTGTCCAGGCCTTCAGAGAAGTGGCTCTGGGAGCCACATGACGTGCATCTTTTGAGCATTTAACGGCACCGTGACACCAGAGGA--------CAGACTCA--GGAGCAAA-ACCACGCG-CT-GAGCACACAGAAGTCCAGCCG---CTTCGTGTCCTCT--------------CTTGGCAATGAAGACACAAACCATTTGCGTGTCAAGCGTT-GCCAGGCCAGCCTCTGTC---------------TCCACAGCTGAGCCCAGAAACCAAGGGCGTGGTGGG----ACTCACAGGCAGGG--AGCGGTGAGGCAGAGCCGTCTGCTGGAGCGAG-CCCTGCTCTCGG----GCCACG--ACTGGCACTC-GGGGTCCCTTCGTGCAATAAGCCACATTCTGAATACACCACGCCAGCCCTTGTAAACCCACGGGAAGCA-CAGGGTGGCTTTTTAGAGGCACAAGGATCCTTACATGAAAAGATGTCAC-CCTGGGCCGACACCAGTGCCCATGCCATTCCGGGTTTCATCACCCTCCTTCCCCTTTCTTCCCAGGCCTCTCTCTCAAA
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               979777 545 -  74750902 GAGGTAGAAGGTT--GAAACGAGGGGGAGAGACAGGCTGTCGGGTCTCTGTCCTGGCCTTCAGAGAAGTGGCTCTGGGAGCCACAC--TGTGTGTATTTTAAGCACTTAACAGCACCATGATGCCGGAAAA--------CAGACGCA--GCGGCGAA-ACCACTCGTTT-GAACATGTAAAAGGCCAGCCA---CTTCTTGTCCTGC--------------CTCGGCAATGAAGACAC-------TTGCACACCAAACATT-GCCAGGCCAGCCTCTGTC---------------TCCGAAGCTGAGCCCAGAAACCAAGGGCGTGGAGGG----ACTGGCAGGCGGGG--AGTGGTGAAGT-GTGCCATCAGCCGCAGCGAGCCCCTGCTCTATG----GCCAAG--ATTGGCATTCGGGGGTCAGTTCATGCAGTGAGCCACATTCTGAATACACCAAGCCAGCCCTTACAAACCCACAGCAGGCA-TGGGGTGGCTTTTTAGAGGCACAAGAATCTTTAGATGAAGGAATGT-AC-CCGGCACCCACAC-AGTGCCCACGCCAAGCAGGGTTCCACCACTCTCCTTCCCCCATCTGCCCAGGCCTCTCTCTCAAA
i calJac3.chr17            C 0 C 0
s mm10.chr16                65467499 467 -  98207768 GAGGGCAAAGGTT--GAAACTAGGAGGAGCCTGGGCCTACAGAGTGTTAGTCCCAGTCTAGAGCGAAGAGGCCCCTGAGACTACTTTGCATGTCTTTGTGAGGTATTCAACC-CACCAAGAAACCAGAAAACAAAGTAGCAAACACA--GTAGCAAAGACCACTCCTTT-GAGCATGGAAAAGGTCAACTA---CTTCTCAGCCTCT--------------CCTGGCAACAAAGACACAAGCCACTTATTTGTTAAACAGTGGCTTGACCATCCTCCCTC------------------------------AGAGGTC-AGGGCATGGAGGAGACTGCCCAAAAGAAAGG--ACCTG-----CAGAAACAGCAGTCAGAGTTTGGTCCTGC----GG----GCAGAGGTAGGGGGCCTT-TGAGTCTGTCCAGGCAATAAGGCACATTTGAAGCAAAGCAAGGCAGTACATGCAAGCGCACAGGAC------GGGTAGT------------------TCCTGAGGTGTAGGGACCTGCCACTTGAGCCAACAGAGGTGTCCA---------------------------------------------------------
i mm10.chr16               C 0 C 0
s canFam3.chr33             29108399 521 +  31377067 aaaaaaaaaaaAA--AAAAAAAGGAGGAGAGACACCTCTAACGTCTTCAGTCTTGGCCTTCAAAGAAGTGGCCCCAAGAGCCACATTCTGGGCAGACCTGAAGCATTGAGGGGTGTCACAAAACCAGGGAA--------GAGACT-------GCACA-ACCACTTG-CTGGAGCACATAAAAAGCCAACTG---CCTCTTGGCCT----------------CCTGGTAATGAAGACA---ATCACTGGCACGTCAGACGCT-GCCGGGACAGCCTCGGCC---------------CCCAGGGCCACGGCCAGGAATCGAGGCTGGGGAGGGG---ATTTCTGGGCAAGGCCCCCCGAGAAGCAGTGCCCTCAGCTCCAGCGGG----CGCTCCAGGTGATGGCAGA--GCCGGCCTTC-GGGGAC-GCTCACGCAATGAGCCCCGTCCT-ACTAAGTCACGCCAGCCTTTGCAAACCCACAGGAAAGACCGGGGTGGCCTTTCAGAGGCTCAAGAATGCTTGGATGAATGGAAATG---CCTGAGCCAACAGATGTG-------------------------CCTTCCCCTCCTGGCTTCGCCCTCCTCACCCTCGAA
i canFam3.chr33            I 312 I 45
e ponAbe2.chr3             199829116 6447 + 202140232 M

a score=534813.000000
s hg38.chr3_KI270935v1_alt    178069 295 +    197351 Cacgtcttta----------tggcttttc--------------------ttttttttttagacagagtcttgct------ctgtca-cccaagctag-----agtgctgccatttcggctccctgcaacctctgcctcccaggttcaagccattctcctacctcagcctcccgagtagctggaattacaggcgctcgccaccacgcccggcaaaattttttatttttagtggagacagg---------gttggccaagctggtcttgaactcctgacctcaggtgatccacccgcctgggcctccaaaagtgctgggattaca-gcgtgagccaccgcgcccggccc
s panTro4.chr3             199815808 295 + 202329955 Cacatcttta----------tggcttttc--------------------ttttttttttagacagagtcttgct------ctgtca-cccaagctag-----agtgctgccatttcggctcactgcaacctctgcctcccaggttcacgccattctcctgcctcagcctcccgagtagctggaattacaggcgctcgccaccacgcccggcaaaattttttatttttagtggagacgga---------gttggccaggctggtcttgaactcctgacctcaggtgatccacctacctgggcctccgaaagtgctgggattaca-gcgtgagccaccgcgcccggccc
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120934546 318 + 123690457 CACGTCTTTA----------TGGCttttcttttt--ttcttctttttttttttttttttagacagagtcttgct------ctgtca-tccaagctagagtgcagtgctgccatttcggctcagtgcaacctctgcctcccaggttcaagcgattctcctgcctcagcctcccgagtagctggaattacaggtgctcgccaccacgcccagcaaaattttttatttttagtggagacggg---------gttggctaggctggtcttgaactcgtgaccacaggtgatccacccacctgggcctccgaaagtgctgggattaca-gcgtaagccaccgcacccggccC
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       88028 303 +    111706 CGTGTCTTTA----------TGGCttttctc---------------ttttttttttttttgatggagtctcgct------ctgcca-cccaagctagagggccatggtatgatctcggctcactgcaacctgtgcctcccgggttcaagcgattctcctgcctcagcctcccgaggagctggaattacagccgcccaccaccatgcctggcaaaatgtc---tttctagtggagatggg---------gttggccaggctggtcttgaactcctgacctcaggtgatccaccaacctgggcctccgaaagtactgggattacaggtgtgagccaccgcgcccggccC
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                119100 315 + 192460366 CGTGTCTTTA----------TGGCttttctctt------tttttttttttttttttttttgatggagtctcgct------ctgtca-cccaagctagagggccgtggtgtgatctcggctcactgcaacctgtgcctcccgggttcaagcaattctcctgcctcagcctcccgaggagctggaattacaggcgcccgtcaccatgcctggcaaaatgttgtatttttagtggagacggg---------gttggccaggctagtcttgaactcctgacctcaggtgatccaccaacctgggcctccgaaagtactgggattacaggtgtgagccaccgcgcccggccC
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                116190 306 - 187378091 CGTGTCTTta----------tggcttttctc---------------ttttttttttttttgatggagtctcact------ctgtca-cccaagctagagtgccgtggtgtgatctcggctcactgcaacctgtgcctcccgggttcaagcgattctcctgcctcagcctcccgaggagctggaattacaggcgcccgccaccatgcctggcaaaatgttgtatttttagtggagacggg---------gttggccaggctggtcttgaactcctgacctcaggtgacccaccaaCCTGGGtctccgaaagtactgggattacaggtgtgagccaccgcgcccggccc
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               468716 312 -  91754291 CGTGTCTTTA----------TGGCttttctc---------ttttttttttttttttttttgttggagtctcgct------ctgtca-cccaagctagagtgccgtggtgtgatctcggctcactgcaacctctgcctcccaggttcaaatgattctcctgcctcagcctcccgaggagctggaattacaggcgcccgccaccatgcctggcaaaatgttgtatttttagtggagacggg---------gttggccaggctggtcttgaactcctgacctcaggtgatccaccaacctgggcctccgaaagtactgggattacaggtgtgagccaccgcgcccggccC
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               980322 344 -  74750902 CAGGTCTCTATGGTATGCCTTGGCTTttctctttccttttcttttcttttcctttctttccttCCTTCCTTCCTTCCTAACTCTCATcccaggctggagtgcagtggcaccatctctgctggccgaaaccgctgcctcctgggttcaagtgcttctactgcctcaacctcctgagtagctgggattacaggcacctgccactacacccagc--ttttttgtgtttttagt-aagacgggtttcaccacattggccaggctagcctcaaactcctgacctcaggtgatttgcctgcctcggcctcccaaagtgctgagattacaggcgtgagcccccgcgcctggccC
i calJac3.chr17            C 0 C 0
s mm10.chr16                65467966  89 -  98207768 -----CTTTA---------------CTTC---------------------------------------------------CTGGCT-CC--------------------------------ATTGTACTCCCTGCCTGCTAACTCCA---------------------------------------------------CCCCACCCCCATC---------------------AGAAGGA------------------------------------ACC----------------------CTTTCAAAGATGT-----TTGCA-------------------GGCCC
i mm10.chr16               C 0 C 0
e canFam3.chr33             29108920  45 +  31377067 I
e ponAbe2.chr3             199829116 6447 + 202140232 M

a score=1792467.000000
s hg38.chr3_KI270935v1_alt    178364 761 +    197351 tttatgccttttctactttacaccagatgctgtctcgtttcatcctcatgacaaccctacgtagtagccccttccccctgggctcagtttgccgatgaagagcctaagactccagagccaaa-aggcgttgcctgt--gttccctgggctgccaagggcgtcgctgatgct---ggacctctgagtttcagcccctgctcttccctgtg--caccttgctg-GTCGTTGGCCAAAATTTGGCTGATGTTCCTGGCAGGACCTCTTGTCCAGGGATCCTTTCCTTTTGAGTGTCCTGGAGCA-CAGTG-GGGTTTC------CCAGAGGGG-CAGAGGGGTCTGTGGAGAGTTTTGGTGTCCTCGGTGGCAAGTTGAGGTGG-------CCTGTCCCAGACTGACAGATAGACCGGGGGTTCTCCGAGGAGGGGCCCATAAAGACCCTTCCCCGT-----------GGAGTGCGCTGTGGCC-GGCGTCccctcccctgcctgccctgcacttgctccag-cctgtcacctccctg-------------------------------------G-GGTCAC------TGATAGTG-----------CTGGAGACCAAGGCCTATTTCGACCCAGTTGCCTTTCCCTGTGGCATGGAACCAGGACGGCCAGGCTTCCTTCTGAGTCATTCCTGCCTGGGGCGACCAGTAGACACCAAATTTCCATCTG-TCCTTGTCTAGCCCACCTCTGT-CTGCTGTGCCTTATC----CTTTAACCCTTGAGAGCCAGGGCTGTTCCTTAAGGAAACCCTCATTGCGGCAGCTCCTTTGTGGAAACC-CTGTGTTTTTCCTCTGGCCT-GG
s panTro4.chr3             199816103 762 + 202329955 tttatgccttttctactttacaccagatgctgtctcgtttcatcctcatgacaaccctacgtagtagccccttccccctgggctcagtttgccgatgaagagcctaagactctggagccaaa-aggcgttgcctgt--gttccctgggctgccaagggcgtcgctgatgct---ggacctctgagtttcagcccctgctcttccctgtg--caccttgctg-GTCGTTGGCCAAAATTTGGCTGATTTTCCTGGCAGGACCTCTTGTCCAGGGATCCTTTCCTTTTGAGTGTCCTGGAGCA-CAGTG-GGGTTTC------CCAGAGAGG-CAGAGGGGTCTGTGGAGAGTTTTGGTGTCCTCGGTGGCAAGTTGAGGTGG-------CCTGTCCCAGACTGACAGAGAGACCGGGGGTTCTACGAGGAGGGGCCCATAGAGACCCTTCCCCGC-----------GGGGTGCGCTGTGGCC-GGCGTCCCCTTCCCTGCCTGCCCTGCACTTGCTCCAG-CCTGTCACCTCCCCG-------------------------------------G-GGTCAC------TGATAGTG-----------CTGGAGACCAAGGCCTATTTCGACCCAGTTGCCTTTCCCTGTGGCATGGAACCAGGACGGCCAGGCTTCCTTCTGAGTCATTCCTGCCTGGGGCGACCAGTAGACACCAAATTTCCATCTG-TCCTTGTCTAGCCCACCTCTGT-CTGCTGTGCCTTATC----CTTTAACCCTTGAGAGCCAGGGCTGTTCCTTAAGGAAACCCTCATTGCGGCGGCTCCTTTGTGGAAACC-CTGGGTTTTTCCTCTGGCCTGGG
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120934864 726 + 123690457 TATATGCATTTTCTActttacaccagatgctgtctcgtttcatcctcatgacaaccttacgtagtaaccccttccccttgggct--gtttgccgatgaagagcctgagactccagagccaaa-gggtgttgcctgt--gttccccgggctgccaagggcgtcgctgacgct---ggacctctgagtttcagcacctgctcttccctgtg--caccttgctg-GTGGTTGGCCAAAATTTGGCTGATTTTCCTGGCAGGACCTCTTGTCCAGGGATCCTTTCCTTCTGAGTGTCCTGGAGCA-CAGTG-GGGTTTC------CCAGAGGGC-CAGAGCGGTCTGTGGAGAGTTTTCGTGTCCTTGGTGGCAAGTTGAGGTGG-------CCTGTCCCAGACTGAC----AGACCGAGGGTTCTCTGAGGAGGGGCCCATAAAGACCCTTCCCTGC-----------AGGGTGCGCTGCGGCC-GGCGTCCCCTCCCCTGCCTGCCCTGCACTTGCTCCAG-CCTGTCACCTCCCCG-------------------------------------G-GGTCAC------TGATAGTG-----------CTGGAGACCAAGGCCTATTTCAACCCAGTTGCCTTTCCCTGTGGCGTGGAACCAGGACAGCCAGGCTTCCTTCTCAGTCATTCCTGCCTGGGGCGACT-GTAGACACCAAATTTCCATTTG-TCCTTGTCTAGCCCACCTCTGT-CTGCTGTGCCTTATC----CTTTAACCCTTGAGAGCCAGGGCTGTTCCTTAA-----------------------------GGAAACC-CTGGGATTTTCCTCTGACCTGGG
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       88331 762 +    111706 TTTATGACTTTTCTACTTTACACCAGATGCTGTCTCGTTTCATCCTCATGACAACCCTACGTAGCAGCCCCTTCCCCTTGGGCTCAGTTTGCCGACGAAGACC--GAGACTCCAGAGCCAAAGGGGCGTTGCCTGT--GTTCCCCGGGCTGCCAAGGGCGTCGCTGGCGCT---GGGCCTCTGGGTTCCAGCTCCTGCTCTTTGCTGTG--CCCCTTGCTG-GTCGTTGGCCACAGTTTGGCTGATTTTCTTGGCGGGACCTCCTGTCCCGGGATCCTCTCCCTCTGCGTGTCCTGGAGCA-CAGTG-GGGTTT-------CCAGAGGG--CAGAGGGGTCTATGGAGAGTTTTGGGGTCCTTGGTGGCAAGTTCAGGTGG-------CCTCTCCCAGACCGACAGACAGACTGCGGGTTCTCCGAGGAGGGGCCCACAGAGATCCTTCCCCTC-----------GGGGTGCGCTGTGGCC-GGCGTCTCCT-CCCTGCCTGTCCTGTGCTTGGTCCAG-CCTGTCACCTCCCCG-------------------------------------G-GGTCAC------TGATAGTGAC-------CCTTGGAGACCAAGGCCTATTTCAACCCAGTGGCCTTTTCCTGGGGCATGGAACCAGGACAGCCAGGCTTCCTTCTGAGTCATTTCTGCCTGGGGCCACCAGTGGACACCAAATTTCCATTTG-TCCTCGTCTAGCCCACCTCTGT-CTGCTGTGCCTTATC----CTTTAACCCTTGAGAGCCAGGGCTGTTCCTTAAGGAAATCCTCATTGTGGCGGCTCCTTTGTGGAAACC-CTGGGTTTTTCCTCTGGCCTGGG
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                119415 762 + 192460366 TTTATGACTTTTCTActttacaccagatgctgtctcgtttcatcctcatgacaaccctacgtagcagccccttccccttgggctcagtttgccgacgaagacc--gagactccagagccaaaggggcgttgccTGT--GTTCCCCGGGCTGCCAAGGGCGTCGCTGGCGCT---GGGCCTCTGGGTTCCAGCTCCTGCTCTCTGCTGTG--CCCCTTGCTG-GTCGTTGGCCACAGTTTGGCTGATTTTCTTGGCGGGACCTCCTGTCCCGGGATCCTCTCCCTCTGCGTGTCCTGGAGCA-CAGTG-GGGTTT-------CCAGAGGG--CAGAGGGGTCTATGGAGAGTTTTGGGGTCCTTGGTGGCAAGTTCAGGTGG-------CCTCTCCCAGACCGACAGACAGACTGCGGGTTCTCCGAGGAGGGGCCCACAGAGATCCTTCCCCTC-----------CGGGTGCGCTGTGGCC-GGCGTCTCCT-CCCTGCCTGTCCTGTGCTTGGTCCAG-CCTGTCACCTCCCCG-------------------------------------G-GGTCAC------TGATAGTGAC-------CCTTGGAGACCAAGGCCTATTTCAACCCAGTGGCCTTTTCCTGGGGCATGGAACCAGGACAGCCAGGCTTCCTTCTGAGTCATTCCTGCCTGGGGCCACCAGTGGACACCAAATTTCCATTTG-TCCTCGTCTAGCCCACCTCTGT-CTGCTGTGCCTTATC----CTTTAACCCTTGAGAGCCAGGGCTGTTCCTTAAGGAAATCCTCATTGTGGCGGCTCCTTTGTGGAAACC-CTGGGTTTTTCCTCTGGCCTGGG
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                116496 770 - 187378091 tttatGACTTTTCTACTTTACACCAGATGCTGTCTCGTTTCATCCTCATGACAGCCCTACGTAGCAGCCCCTTCCCCTTGGGCTCAGTTTGCTGACGAAGACCCTGAGACTCCAGAGCCAAAGGGGCGTTgcctgt--gttccccaggctgccaAGGGCGTCGCTGGCGCT---GGGCCTCTGGGTTCCAGCTCCTGCTCTCTGCTGTG--CCCCTTGCTG-GTCGTTGGCCACAGTTTGGCTGATTTTCTTGGCAGGACCTCCTGTCCCGGGATCCTCTCCCTCTGCGTGTCCTGGAGCA-CAGTG-GGGTTT-------CCAGAGGG--CAGAGGGGTCTATGGAGAGTTTTGGGGTCCTTGGTGGCAAGTTCAGGTGG-------CCTCTCCCAGACCGACAGACAGACTGCGGGTTCTCCGAGGAGGGGCCCACAGAGATCCTTCCCCTC-----------GGGGTGCGCTGCGGCC-GGCGTCTCCT-CCCTGCCTGTCCTGTGCTTGGTCCAG-CCTGTCACTTCCCCG-------------------------------------G-GGTCGCTGATAGTGATAGTGAC-------CCCTGGAGACCAAGGCCTATTTCAACCCAGTGGCCTTTTCCTGAGGCATGGAACCAGGACAGCCAGGCTTCCTTCTGAGTCATTCCTGCCTGGGGCCACCAGTAGACACCAAATTTCCATTTG-TCCTCGTCTAGCCCACCTCTGT-CTGCTGTGCCTTATC----CTTTAACCCTTGAGAGCCAGGGCTGTTCCTTAAGGAAACCCTCATTGTGGCGGCTCCTTTGTGGAAACC-CTGGGTTTTTCCTCTGGCCTGGG
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               469028 765 -  91754291 TTTATGACTTTTCTActttacaccagatgctgtctcgtttcatcctcatgacaaccctacatagcagccccttccccttgggctcagtttgctgacgaagaccctgagactccagagccaaaggggcgttgccTGT--GTTCCCCGGGCTGCCAAGGGCGTCGCTGGCGCT---GGGCCTCTGGGTTCCAGCTCCTGCTCTTTGCTGTGCCCCCCTTGCTG-GTCGTTGGCCACAGTTTGGCTGA-TTTCTTGGCAGGACCTCCTGTCCCGGGATCCTCTCCTTCTGCGTGTCCTGGAGCA-CAGTG-GGGTTT-------CCAGAGGG--CAGAGGGGTCTATGGAGAGTTTTGGTGTCCTTGGTGGCAAGTTCAGGTGG-------CCTCTCCCAGACCGACAGACAGACTGCGGGTTCTCCGAGGAGGGGCCCACAGAGATCCTTCCCCTC-----------GGGGTGCGCTGTGGCC-GGCGTCTCCT-CCCTGCCTGTCCTGTGCTTGGTCCAG-CCTGTCACCTCCCCG-------------------------------------G-GGTCAC------TGATAGTGAC-------CCTTGGAGACCAAGGCCTATTTCAACCCAGTTGCCTTTTCCTGGGGCATGGAACCAGGACAGCCAGGCTTCCTTCTGAGTCATTCCTGCCTGGGGCCACCAGTAGACACCAAATTTCCATTTG-TCCTCGTCTAGCCCACCTCTGT-CTGCTGTGCCTTATC----CTTTAACCCTTGAGAGCCAGGGCTGTTCTTTAAGGAAACCCTCATTGTGGCGGCTCCTTTGTGGAAACC-CTGGGTTTTTCCTCTGGCCTGGG
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               980666 756 -  74750902 CCTATGGCTTTTCTACTTCACACCAGATGCTGCCTCG-TTCATTCTCATGACA---------------CCCTTCCTTTTGGGCTGAGATTGCTGACGAAGAGCCTGAGACTCCAGAGCCGAAGGGATGTCCGCTGCTGGGTTCCCCGGCTGCTGAGGGCGCCGCTGACACT---GGGCCTCTGAGTTTCAGCTCCTGCTCCTCACTTTG--CACCTTGCTG-GTCCTCGG-CGGAATTTGGCTGATTTTCTTAGCAGGACCTCTTGTC---------------TCTCAGTGTCCTGGAGCA-CAGCG-GGCTTC-------CCGGAGGGG-CAGAAGGGTCTGTGGACAGTTTTGGTGTCCTAGGTGGCAAGTTGAGGTGG-------CCTCTCCCAGACTGGCAGACAGACTGGGGGTTCTCAGAGGAGGAGCCCGTAGAGACCCTTCCCCTC-----------AAGGTGTGCTGTGACC-AGCGTCTCCT-CC---CCTGCCCTGCACCTGCTCCAG-CCTGTCACCTCCCCGTGGCTGC------AGGGGTGGTGGCACCTGGGTTACAG-GGCCAC------TGATAGTA-----------TTGGAGACCAAGGCTTATTTCGACCCAGCTGCCTTTCCCTGGGGCGTGGAATC---ACGACCCAGCTTCCTTCTGAGTCATTCCTGCCTCCAGCAACCAGTAGACACCAAG-TTCCGTCTG-TCCTTGTCCAGCCCACCTCTGTCCCGCTGCGCCTAATC----CTTTAACCCTTGCGAGCCAGGGCTGTTCCTTAAGGAAGCCCTCATTGTGGCGGCTGCTCTGTGGACACC-CTGGGCTTTCCCTGTGACCTTGG
i calJac3.chr17            C 0 C 0
s mm10.chr16                65468055 674 -  98207768 TT--------------------CTTGATGCTATCTCAATTTATCCTCGTGACGATGCTACACTACAGTCCCTTCC-TTTAGACTC-GTTTGCCATCTAGCACGCTGAGACTGTCCGGCCACA-GACCTTTGCCTCT--GCTGCCT-GGCTGCCGAGCTCTTC------------------------TACAGTCACATCTATT-GTTGAG--TCCCTCGCCT-GC-----------ATCTCTTTGCTTTCCTCGACAGACTATCCTGTACAAAGATCCTCTTCTTCTGAATGTCCTTGGGCAGGGGTG-GGGGACCTCAGGGCAGGAGGGGACAGATGTGCCTGTGG--AGTTTCAG---CCTTGGCTGCAGGCTGGGGGGGGGGGGGCACTTTCTTAACCCAACGAAAAGATTGGATGCTCTCTAAAAGAAGGCCAAGGATGCCCTTTTCCCT-------------GTGTATCCTGTGGCCAAGGGTCTCGT-C----TCCATCCTGCATTAGCAATGA-CCTCCTATCTTCCCA-------------------------------------GTGGCCAC------TCAAAGCAGCGTTGTCACCTCTGTGACTAGGTC-------------ACTGACGGTCCTAATG----GGAAGCATAGCTGCCGGGCTTCCTCGTGAGTCATTCCTGACAGAAGTCA-----------CAGAGTTACGC----TCCCTGTCTGGTCCACCTTTGT-CCTC---ACCTTTCCAGAACTTTCACTCT--GGAGCCCAGGCTCTACC---AGGAAGGAC------------CTCTTCTGTAGAAGCA-CTGAGCTTTCTATCTGACCCGG-
i mm10.chr16               C 0 I 1765
s canFam3.chr33             29108965 774 +  31377067 TTTACGGCTCTTCCACTTTACAGCAGACACTACCTCGTTGTATCCTCACCACAA--------------TGCTTCCCACTTAACTCATTTTGCCAATAAAGTCACCAA---------CCTAAAGGGACTCTTCTCAT--GTCCCCTGGGCTGCCTAAGTGGCAACATTCACTCAAAGTTTTCTGATTTGAAGTTCCTGCTCTTTGCTGTA--CATTTTGCTGAACCACTGACCTAAATTTGATCTATCTTCTTACTAGGACCTCTTGTTCAGGGGTTCTCTCCTTTTGGGTGTCTCCAAGCA-CAGCGAGAGTTTC------CTGGGGTGG-GAGTGGGG---GAGCAGATGGCCTGTGCCCTTGGTGGCA-TCTGGGTAGG-------CCTCTCCCAGACTGCCAGACAGCCTAGAGGTTCTCTGAAAGAGGGAGAGCAGGACACCCTGCCCTCTGGGGCCCTCTGGGGTCCTCCGTGACG-GCGGTCATCT-------CTGGCCTGCACTTGAGGCAGCCCCGTAAGCTCCCAGTAATGGCCCAGGGCAGGGCAGTGGCCCCTCGATTACTG-GGACAC------TGATAGTA-----------TTGGAGACTGGATTTGAGTTTGACCCAGTTTCCTCGCGCAG-GGTGTGGAATC---------AGGCTTCTTTCCAACACATTCTCAGCGGGAGCCGCTAGTCTCCACTGGGCTTCCATCAGCTCCCTGCCCAGCCCACGTCTGT-CCACCCTCCTTCTGC----CTTTGACTTTTGACAGCCAGGGATTTTCTTCCAGGAAGTCCTTACTACTGCAGCTTCTTCATGGAAACCACAGGGCTCCCCCGCCGGCCAGA-
i canFam3.chr33            I 45 C 0
e ponAbe2.chr3             199829116 6447 + 202140232 M

a score=207239.000000
s hg38.chr3_KI270935v1_alt    179125 101 +    197351 GCTTCAGTGTGACCCAGCCTGGGTGAGGGTCCTGCCGGCAAGTGTGCAAACAGACCCTAGACTCAAGTATAGGCAGGTCATCTGTAAACCCCT-TCAGGGAG
s panTro4.chr3             199816865 101 + 202329955 GCTTCAGTGTGACCCACCCTGGGTGAGGGTCCTGCCGGCAAGTGTGCAAACAGACCCTAGACTCAAGTATAGGCAGGTCATCTGTAAGCCCCC-TCACGGAG
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120935590 100 + 123690457 GCTTCAGTGCGACCCAGACTGGGTGAGGGTCCTGCCGGCAAGTGTGCAAACAGACCCTAGACTCGAATATAGGCAGGTCATCTGTAAGTCCC--TCAGGGAG
i nomLeu3.chr11            C 0 I 4997
s rheMac3.chrUn_JH291127       89093 101 +    111706 GCTTCAGTGTGACCCAGCCTGGGTGAGGGTCCTGCCAGCAAGTGTGCAAACAGACCCTAGACTCAAACATAGGCAGGTCATCTGTAAGCCCCC-TCAGGGAG
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                120177 101 + 192460366 GCTTCGGTGTGACCCAGCCTGGGTGAGGGTCCTGCCAGCAAGTGTGCAAACAGACCCTAGACTCAAACATAGGCAGGTCATCTGTAAGCCCCC-TCAGGGAG
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                117266 101 - 187378091 GCTTCAGAGtgacccagcctgggtgagggtcCTGCCAGAAAGTGTGCAAACAGACCCTAGACTCAAACATAGGCAGGTCATCTGTAAGCCCCC-TCAGGGAG
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               469793 101 -  91754291 GCTTCAGTGTGACCCAGCCTGGGTGAGGGTCCTGCCAGCAAGTGTGCAAACAGACCCTAGACTCAAACATAGGCAGGTCATCTGTAAGCCCCC-TCAGGGAG
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               981422  78 -  74750902 GCTTCGGTGTGACCCAG-------------CCTGCCAGCAAGTCTGCAAAGAGA---------CAAATACAGGGAGACCATCTGCCAGCCCC--TCAGGGAG
i calJac3.chr17            C 0 C 0
s canFam3.chr33             29109739  71 +  31377067 -----CACACGGCTGGGCCTGGACCA-CGCACTGGCAGCAGGGCCGGAAAC-------------------AGGCAGGTCG------GGCCCTCGGCTGGGGG
i canFam3.chr33            C 0 C 0
e mm10.chr16                65468729 1765 -  98207768 I
e ponAbe2.chr3             199829116 6447 + 202140232 M

a score=49125.000000
s hg38.chr3_KI270935v1_alt    179226 35 +    197351 CCAAAAGGAACGGGGCTGG-CTGGCTGCCAGTCCTC
s panTro4.chr3             199816966 35 + 202329955 CCAAAAGGAACGGGGCTGG-CTGGCTGCCAGTCCTC
i panTro4.chr3             C 0 M 387
s rheMac3.chrUn_JH291127       89194 35 +    111706 CCAAAAGCAATGGGGCTAG-CTGGCTGCCAGTGCCC
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                120278 35 + 192460366 CCAAAAGGAATGCGGCTGG-CTGGCTGCCAGTGCCC
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                117367 35 - 187378091 CCAAAAGGAATGGGGCTGG-CTGGCTGCCAGTGCCC
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               469894 35 -  91754291 CCAAAAGGAATGGGGCTGG-CTGGCTGCCAGTGCCC
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               981500 33 -  74750902 TCAAAAGTGCAGGGGCTGG--TGGCTGCCCATCCC-
i calJac3.chr17            C 0 C 0
s canFam3.chr33             29109810 31 +  31377067 ----TGGGAATGGGCCTGACCTGTCTCCTCTTGCC-
i canFam3.chr33            C 0 C 0
e mm10.chr16                65468729 1765 -  98207768 I
e ponAbe2.chr3             199829116 6447 + 202140232 M
e nomLeu3.chr11            120935690 4997 + 123690457 I

a score=233410.000000
s hg38.chr3_KI270935v1_alt    179261 178 +    197351 CAGCAGCTGCCCTGTGGGGGTGGGGGCTGCCCACCCGCCCTTGGTGACTGCTT-TTCCTGCCAAGGCCCTGGTCATGCCCGGTCAGATGTGTGGGTGCCATCTCCCAGCCACGACCATCTCCTCTCCTGGCCCAGCTCCACTTGGTCCCCTTAGCGACGCAAAGGACTCAGCGCTCCAC
s rheMac3.chrUn_JH291127       89229 177 +    111706 CAGCAGCTGCCCTGT-GGGGTGGGGGCCGCCTGCCCACCGTTGGTGACTGCTT-TTCCTGCCAAGGCCCTGGTAATGCCCGGTCAGATGTGTGGGTGCCATCTCCCGGCCACTGCCACCTCCTCTCCTGGCCCAGCTCCTCTTGGTCCCCTTAACGACGCAAAGGACCCAGCGCTCCAG
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                120313 177 + 192460366 CAGCAGCTGCCCTGT-GGGGTGGGGGCCGCCTGCCCACCGTTGGTGACTGCTT-TTCCTGCCAAGGCCCTGGTAATGCCCGGTCAGATGTGTGGGTGCCATCTCCCGGCCACTGCCACCTCCTCTCCTGGCCCAGCTCCTCTTGGTCCCCTTAACGACGCAAAGGACCCAGCGCTCCAG
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                117402 177 - 187378091 CAGCAGCTGCCCTGT-GGGGTGGGGGCCGCCTGCCCACCATTGGTGACTGCTT-TTCCTGCCAAGGCCCTGGTAATGCCCGGTCAGATGTGTGGGTGCCATCTCCCGGCCACTGCCACCTCCTCTCCTGGCCCAGCTCCTCTTGGTCCCCTTAACGACGCAAAGGACCCAGCGCCCCAG
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               469929 177 -  91754291 CAGCAGCTGCCCTGT-GGGGTGGGGGCCGCCTGCCCACTGTTGGTGACTGCTT-TTCCTGCCAAGGCCCTGGTAATGCCCGGTCAGATGTGTGGGTGCCATCTCCCGGCCACTGCCACCTCCTCTCCTGGCCCAGCTCCCCTTGGTCCCCTTAACGACGCAAAGGACCCAGCGCTCCAG
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               981533 173 -  74750902 CAGAAGCTGCCCTGA-GGCGTGGAGGCTGCCTGTTGGCCCTTGGTGACTGCTT-TTCCTGCCAATGCTCTGGTAATGCCCCGTCAGATGTGTAGATGCCACCTTCCAGCCAC-ACCACCTCTGCTCCTGGACCAGCTCCACTTGGTCCCCTTA---ACTCGAAGGGCTCCGCACTCCAG
i calJac3.chr17            C 0 C 0
s canFam3.chr33             29109841 176 +  31377067 CAGAAGCTCCCTGGG-ACCCGGGGGGCTAGGTAGTGTCCTGCGGAGACTGTTTCCTCCCTCCCATGTCCCCCAAATGCTCAGTCACGTGCTTGGGGCAGCACTTCCCCCCAC-GCCCCCGTCCTCCCAGGTCCGGCTCCGTCTTGTCCCCTCAACAGTGCACAGGCCCCAGCAC-CCAG
i canFam3.chr33            C 0 C 0
e mm10.chr16                65468729 1765 -  98207768 I
e ponAbe2.chr3             199829116 6447 + 202140232 M
e nomLeu3.chr11            120935690 4997 + 123690457 I
e panTro4.chr3             199817001 387 + 202329955 M

a score=415260.000000
s hg38.chr3_KI270935v1_alt    179439 253 +    197351 GACATGCC--TAGCTTCTTCGGGTCGTCATGGAGACGCCCTTGCACACCAACAGTCCTTCACTCCTTCTCCGGGTCACGCCCCCGTG---------------CTTTTCCACGCCCACCCCAGGTCTTGCCCCTCTGCGCTCCTCTCCACAGACCCCACTTCCTGGCTC--------------------CACATG--------------------GAGCTGAGTGTCCAGCTGGTACCCAGCACATTTGGGCTCAGCTTTAAATCAC-AGATTTGGAAAC-TCAAGAACTTGGGCGTCAGGAGGTCCAACCGT
s panTro4.chr3             199817392 253 + 202329955 GACATGCC--TAGCTTCTTCCGGTCGTCACGGAGACGCCCTTGCACACCAACAGTCCTTCACTCCTTCTCCGGGTCACGCCCCCGTG---------------CTTTTCCACACCCACTCCAGGTCTTGCCCCTCTGCGCTCCTCTCCACAGACCCCACTTCCTGGCTC--------------------CACGTG--------------------GAGCTGAGTGTCCAGCTGGTACCCAGCACATTTGGGCTCAGCTTTAAATCAC-AGATTTTGAAAC-TCAAGAACTTGGGCGTCAGGAGGTCCAGCCGT
i panTro4.chr3             M 387 C 0
s rheMac3.chrUn_JH291127       89406 251 +    111706 GGCATGCC--GAGCTTCTTCGGGTCGCCGTGGAGATGCCTTTGCACACCAGCCGTCCTCCACTCCCTCTCGGGGTCATG-CCCCGTG---------------CTTTTCCACGCCCACCCCGGGTCTTGCCCCTCTGGACTCCTCTCTACAGACCCCGCTTCCTGGCTC--------------------CACATG--------------------GAGCTGAGTGCCCAGCTGGTACCTAGC-CATTTGTGGTCAGCTTTAAATCAC-AGATTTTGAAAC-TCAAGAACTTAGGCATCAGGAGGTCAAGCCAT
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                120490 251 + 192460366 GGCATGCC--GAGCTTCTTCGGGTCGCCGTGGAGATGCCTTTGCACACCAGCCGTCCTCCACTCCCTCTCGGGGTCATG-CCCCGTG---------------CTTTTCCACGCCCACCCCGGGTCTTGCCCCTCTGGACTCTTCTCTACAGACCCCGCTTCCTGGCTC--------------------CACATG--------------------GAGCTGAGTGCCCAGCTGGTACCTAGC-CATTTGCGGTCAGCTTTAAATCAC-AGATTTTGAAAC-TCAAGAACTTAGGCATCAGGAGGTCAAGCCAT
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                117579 250 - 187378091 GGCATACC--TAGCTTCTTCGGGTCGCCATGGAGATGCCTTTGCACACCAGCCGTCCTCCACTCCCTCTCGGGGTCATG--CCCGTG---------------CTTTTCCACGCCCACCCCGGGTCTTGCCCCTCTGGACTCCTCTCTACAGACCCCGCTTCCTGGCTC--------------------CACATG--------------------GAGCTGAGTGCCCAGCTGGTACCTAGC-CATTTGTGGTCAGCTTTGAATCAC-AGATTTTGAAAC-TCAAGAACTTAGGCGTCAGGAGGTCAAGCCAT
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               470106 251 -  91754291 GGCATGCC--TAGCTTCTTCGGGTTGCCATGGAGATGCCTTTGCACACCAGCCGTCCTCCACTCCCTCTCGGGGTCATG-CCCCGTG---------------CTTTTCCACGCCCACCCCGGGTCTTGCCCCTCTGGACTCCTCTCTACAGACCCCGCTTCCTGGCTC--------------------CACATG--------------------GAGCTGAGTGCCCAGCTGGTACCTAGC-CATTTGTGGTCAGCTTTAAATCGC-AGATTTTGAAAC-TCAAGAACTTAGGCGTCAGGAGGTCAAGCCAT
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               981706 259 -  74750902 GGTGTGCCTATAGCTTCTTCGGGTTGTCACGGAGATGCCCTTCCACATTTAGAGTCCTTCACTCCTTCTCCAGGTCTTA-------------------------------CCCCTACCCCAGGACTTGTCCCTCTGGGCTTCTCGTGACAGACCCTGCTGCCTGGCCCCTGTGGAGTTTGATGACCCTCACATG--------------------GGGCTGAGTGTCCAGCTGGCACCTAACACATTTGGAGTCAGCTTAAAATCAC-AGATTCTGAAAC-TCAAGAACGTAGGGGTCAGGAGGTCAACCCAT
i calJac3.chr17            C 0 I 311
s canFam3.chr33             29110017 269 +  31377067 GCCGTCCCTGTGCCTCTTCCAGGTCCTCA-------GCTTC---------ATGGTCCTTTACTCCTTCTCTTGCGCATG-CCCTGTGGCCCCCGGGGCTGTTCCTGCCCACCCCAACCCCAGTTCCTG-CTCTCTGGGCTTTTCTCCACAAACTC-----CCTGGCTC--------------------CTCTTGTTCAAGAGACTCCTGAGGCAAGGCTAAGTGCAGAGCTGGGGCTGAACACTTTTTCTGTTGACTTCACatcccaagatagcaaaactttaagaactcgggaatccagaggttatgccac
i canFam3.chr33            C 0 C 0
e mm10.chr16                65468729 1765 -  98207768 I
e ponAbe2.chr3             199829116 6447 + 202140232 M
e nomLeu3.chr11            120935690 4997 + 123690457 I

a score=171386.000000
s hg38.chr3_KI270935v1_alt    179692 85 +    197351 TCACCA--CTGCTTTTTACACAGGGGACCGGGGCCCTGGGGAGACACGGGGC---AGGGCCTGGTCACAGGGGCCAGAACAGTTCACGGC-----
s panTro4.chr3             199817645 85 + 202329955 TCACCA--CTGCCTTTTACACAGGGGACCGGGGCCCTGGGGAGACACGGGGC---AGGGCCTGGTCACAGGGGCCAGAACAGTTCATGGC-----
i panTro4.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       89657 85 +    111706 TCACCA--CGGCTCTTTACACAGGGGACCAGGGCCCTGGGGAGACACGGGGC---GGGGCCTGGTCACGGGGACCATAACGGTTCATGGC-----
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                120741 85 + 192460366 TCACCA--CGGCTCTTTACacaggggaccggggccctggggagacacggggc---ggggcctggtcacggggaccATAACGGTTCATGGC-----
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                117829 85 - 187378091 TCACCA--CGGCTCTTTACACAGGGGACCGGGGCCCTGGGGAGACACGGGGC---GGGGCCTGGTCACGGGGACCATAACGGTTCATGGC-----
i papAnu2.chr2             C 0 M 549
s chlSab2.chr15               470357 85 -  91754291 TCACCA--CGGCTCTTTACACAGGGGACCGGGGCCCTGGGGAGACACGGGGC---GGGGCCTGGTCACGGGGACCATAACGGTTCATGGC-----
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               982276 85 -  74750902 TCACCA--CTGCTTTTTGCACAGGGGACCGGGGGCCTGGGGAGTCTCAGGGC---AGGGCCTGGTCACAGGGGCCAGAACAGTTCATGGC-----
i calJac3.chr17            I 311 C 0
s canFam3.chr33             29110286 95 +  31377067 tcatcaccctactttttatataggggaaccggagcctggagagagaggggaccagagggcccggacatagcaaccagatcagttagtggcacggc
i canFam3.chr33            C 0 C 0
e mm10.chr16                65468729 1765 -  98207768 I
e ponAbe2.chr3             199829116 6447 + 202140232 M
e nomLeu3.chr11            120935690 4997 + 123690457 I

a score=84622.000000
s hg38.chr3_KI270935v1_alt    179777 62 +    197351 AAAGACTTGGCCCTGGGGCTCCTAAATCCAAGCTGC---CTCCCCGGCGCCCCAAGCCCCAGCCT
s panTro4.chr3             199817730 62 + 202329955 AAAGACTTGGCACTGGGGCTCCTAAATCCAAGCTGC---CTCCCCGGCGCCCCAAGCCCCAGCCT
i panTro4.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       89742 62 +    111706 AAAGACTTGGCACTGGGGCTCCTAAATGCGAGCTGC---CTCCGTGCCACCCCAACCCCCAGCCT
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                120826 62 + 192460366 AAAGACTTGGCACTGGGGCTCCTAAATGCGAGCTGC---CTCCGTGCCACCCCAACCCCCAGCCT
i macFas5.chr2             C 0 C 0
s chlSab2.chr15               470442 62 -  91754291 AAAGACTTGGCACTGGGGCTTCTAAATGCGAGCTGC---CTCCCTGGCACCCCAACCCCCAGCCT
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               982361 62 -  74750902 AAAGACTTGGCACTGGGGCTCCTACATCCAAGCCGC---CTGCCTGGTGCCCCAACCCCCAGCCT
i calJac3.chr17            C 0 C 0
s canFam3.chr33             29110381 65 +  31377067 caagtctgggccccaaggcccctaaatccaagttaccatctccccattgcCTAAGGCCAATGCCT
i canFam3.chr33            C 0 I 26
e mm10.chr16                65468729 1765 -  98207768 I
e papAnu2.chr2                117914 549 - 187378091 M
e ponAbe2.chr3             199829116 6447 + 202140232 M
e nomLeu3.chr11            120935690 4997 + 123690457 I

a score=46742.000000
s hg38.chr3_KI270935v1_alt    179839 47 +    197351 CGCTCTGGGAGTCATGATTCCCGTGGAGACTCCTTCAACCACATCTG
s panTro4.chr3             199817792 47 + 202329955 CGCTCTGGGAGTCATGATTCCCGTGGAGACCCCTTCAACCACATCTG
i panTro4.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       89804 45 +    111706 CGCTCTGGGAGTCGCGATTCCCATGGAGACCCCTTCAAC--CATCTG
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                120888 45 + 192460366 CGCTCTGGGAGTCGCGATTCCCATGGAGACCCCTTCAAC--CATCTG
i macFas5.chr2             C 0 C 0
s chlSab2.chr15               470504 45 -  91754291 CGCTCTGGGAGTCGCGATTCCCATGGAGACCCCTTCAAC--CATCTG
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               982423 38 -  74750902 TGCTCTGGGAGCCGTGATTCCCATGGAGG-------AAT--CCACTG
i calJac3.chr17            C 0 C 0
e mm10.chr16                65468729 1765 -  98207768 I
e canFam3.chr33             29110446 26 +  31377067 I
e papAnu2.chr2                117914 549 - 187378091 M
e ponAbe2.chr3             199829116 6447 + 202140232 M
e nomLeu3.chr11            120935690 4997 + 123690457 I

a score=235422.000000
s hg38.chr3_KI270935v1_alt    179886 255 +    197351 CAGGGCAGGGCCGTGTGGCGGCTCCTTCCGGCCTCCACGTCCTCACGGTGGGATG---AGCACTGGAGCGGGGTTGTGTGGCCAGGGTGGGGTGGGGGTGCTGGAGGGTGGGGAGGTGTAGGGAGGTGGTGGCAGTTTCCTTTGCCCTCAGCCTAGTCCTGAAACATCCCGAGGTGG--AAGGGTCCGCTTCACCAGCATGGCTTCTCTTGCAGCCTTTAAACGGCACTCGCCTTCTGACTCACTCCCAGGAAGCTCCTC
s panTro4.chr3             199817839 255 + 202329955 CAGGGCAGGGCCGTGTGGCGGCTCCTTCCGGCCTCCACGTCCTCACGGTGGGATG---AGCACTCGAGCAGGGTTGTGTGGCCAGGGTGGGGTGGCGGTGCTGGAGGGTAGGGAGGTGTAGGGAGGTGGTGGCAGTTTCCTTTGCCCTCAGCCTAGTCCTGAAACATTCCGAGGTGG--AAGGGTCCACTTCACCAGCATGGTTTCTCTTGCAGCCTTTAAACGGCATTCACCTTCTGACTCACTCCCAGGAAGCGCCTC
i panTro4.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       89849 215 +    111706 CAGGGCGAGGCCGTGTGGCGGCTGCTTCTGGCCTCCATGTCCTCACAGTGGGATG---AGCACTCAAGCGAGGGTATGTGGCCGGGGTGGGGTGGGGGTGC----------------------------------------TTGTCCTGAGCCAAGTCCTGAAACATTTTGAGATGG--AATGTTCCACTTCACCAGCCCGGTTTCTCTTGCAGCCTTTACAGGGCATTCCCCTTCTGACCCACTCCCAAGAGGTGCCTC
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                120933 215 + 192460366 CAGGGCGAGGCCGTGTGGCGGCTGCTTCTGGCCTCCATGTCCTCACAGTGGGATG---AGCACTCAAGCGAGGGTATGTGGCCGGGGTGGGGTGGGGGTGC----------------------------------------TTGTCCTGAGCCAAGTCCTGAAACATTTTGAGATGG--AATGTTCCACTTCACCAGCCCGGTTTCTCTTGCAGCCTTTACAGGACATTCCCCTTCTGACCCACTCCCAAGAGGTGCCTC
i macFas5.chr2             C 0 C 0
s chlSab2.chr15               470549 215 -  91754291 CAGGGCGAGGCCGTGTGGCGGCTGCTTCTGGCCTCCATGTCCTCACAGTGGGGTG---AGCACTCGAGCGAGGGTATGTGGCCGGGGTGGGGTGGGGGTGC----------------------------------------TTGTCCTGAGCCAAGTCCTGAAACATTTTGAGATGG--AATGTTCCACTTCACCAGCCTGGTTTCTCTGGCAGCCTTTACAGGGCATTCCCCTTCTGACCCACTCCCAAGAGGCGCCTC
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               982461 235 -  74750902 CAGGGCAAGGGCATGTGGTGGCTCCTTCTGGCCTCCACCTCCTCAGCATGTGGTG---AGCATTCACTCGGGG-CGTGTGGCTGGGGTGGGGTGGGGGTGCTGGAGG----------GTAGGGAGGTGGTGGTAGTTCCCTTTGAGCTCAGCCGAGTCCTGGAAAACCTCAAGGTGG--AATG-TCCGTTTCAGCAGCGT--------TTGCGGCCGTTACAGGGCATTCGCCTTCTGACTCACTCCCAAGGAACTCCGC
i calJac3.chr17            C 0 C 0
s canFam3.chr33             29110472 223 +  31377067 CACCGCAGGCCC---TGGAGCCTCCTTCTGGCCT-----TACTCTGAGCAGGCTGGCTAGGGACGAAGGGGGCCTGTGCGGT---GGAGGGCTGGAGGGTC------------------GGGGAGGCCGTAGCTGTTTCACTTGCTCTCAGCCAAGCCCTTATGCATTTCGAGGAAGGCAGGACACTCCTGCACCAGCACTGCGTCTCCTACCAGCTGGA-AGAGCATATTCCTTCCGACCCTCTCCCGAGAA-------
i canFam3.chr33            I 26 C 0
e mm10.chr16                65468729 1765 -  98207768 I
e papAnu2.chr2                117914 549 - 187378091 M
e ponAbe2.chr3             199829116 6447 + 202140232 M
e nomLeu3.chr11            120935690 4997 + 123690457 I

a score=22483.000000
s hg38.chr3_KI270935v1_alt    180141 19 +    197351 AAATATGCGCCC----AAGAAAT
s panTro4.chr3             199818094 19 + 202329955 AAAAATGCGCCC----AAGAAAT
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120940687 19 + 123690457 aaaTATTCGCCC----AAGAAAT
i nomLeu3.chr11            I 4997 C 0
s rheMac3.chrUn_JH291127       90064 19 +    111706 GAAAATGCGCCC----AAGAACC
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                121148 19 + 192460366 GAAAATGCGCCC----AAGAACC
i macFas5.chr2             C 0 C 0
s chlSab2.chr15               470764 19 -  91754291 GAAAATGCGCCC----AAGAACC
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               982696 19 -  74750902 AAAGATGCTCCC----AAGAACT
i calJac3.chr17            C 0 C 0
s canFam3.chr33             29110695 17 +  31377067 ----AGGAGCCCTTGGGTGAA--
i canFam3.chr33            C 0 C 0
e mm10.chr16                65468729 1765 -  98207768 I
e papAnu2.chr2                117914 549 - 187378091 M
e ponAbe2.chr3             199829116 6447 + 202140232 M

a score=33391.000000
s hg38.chr3_KI270935v1_alt    180160 24 +    197351 ATTTTCCCTCGGCGACTG--TTCTTA
s panTro4.chr3             199818113 24 + 202329955 ATTTTCCCTCGGCGAATG--TTCCTA
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120940706 24 + 123690457 ATTTTCCCTTGGCGAATG--TTCCCA
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       90083 24 +    111706 ACTTTCCTTTGGTGGATG--TTTCCG
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                121167 24 + 192460366 ACTTTCCTTCGGTGGATG--TTTCCG
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                118463 24 - 187378091 ACTTTCCTTCGGTGGATG--TTTCCG
i papAnu2.chr2             M 549 C 0
s chlSab2.chr15               470783 24 -  91754291 ACTTTCCTTCAGTGGATG--TTTCCG
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               982715 26 -  74750902 GCTTTCCTTCAACGAAAGGCTTCCCA
i calJac3.chr17            C 0 C 0
s canFam3.chr33             29110712 18 +  31377067 GGCTTCCCCAGGCCCGTC--------
i canFam3.chr33            C 0 C 0
e mm10.chr16                65468729 1765 -  98207768 I
e ponAbe2.chr3             199829116 6447 + 202140232 M

a score=1273899.000000
s hg38.chr3_KI270935v1_alt    180184 692 +    197351 GCCTGCTGAGAGGCAGGGCAGGAGCTGAGACTCTAACCCCAGCTTGAACT-------------------CTGGACCCCAGACTCT-CCCCCA-AAGACTCAGACACCCAGAAACACAGAATAAAACTTGGTCCTGAAGCCAGAGGGACAGCCTGGAAAGTGTGGGGAAGAGGAC--GGGGGCCCCCGAG--GG-AACATCTCCCACAGGCCTGGCATCCCTCCCCTCCCAGCTCTGTA---------CACGGAGGAGCCCAAGGCCAATGCCGGGGCTACGAGCCCCAGGC--AAGGCCGTGACCCAAATGGAGGC-----TTTTAAACCCGAGCTCAGAGGTAAGAAGCCCACGGCCAGCACCTCCCGGCCCTCTGCGCCCTGGCC--GCCTCC-TCCGCACCACCCTCCC--GGCC---------------------------------------------------------------------GGCCTGCCCCTCTCCTCCTTGTCGCTTCCCTTGCTTGCTGCTGTCTCCCGATCTTCTCCTCTCTCCATTCCCAGGGT-CCTCAGTTTGTCTGCGTCTCACCTGTCTCGTCCTCTCACCCTGCAGCTTTACATGAG-TTTTCTTCC-G----TCTCCATCACCCAGCTTTCCTGGCATCCCCTCTACCCCCAGCTCTGTACACAAGGGTGTACATCTTTCTCCTTGACTCTG---TTCCTCTTGCTCTGGCTCTGCCTGTCTTTCTCTCTGCG---AGTAAGCCTGGGCTCTCA---CCATGGATCCTTCCAGACATCGCCGGGCTGctctctggccc
s panTro4.chr3             199818137 692 + 202329955 GCCTGCTGAGAGGCAGGGCAGGAGCTGAGACTCGAACCCCAGCTTGAACT-------------------CTGGACCCCAGACTCT-CCCCCA-AAGACTCAGACACCCCGAAACACAGAATAAAACTTGGTCCTGAAGCCAGAGGGACAGCCTGGAAAGTGTGGGGAAGAGGAC--AGGGGCCTCCAAG--GG-AACATCTCCCACAGGCCTGGCATCCCTCCCCTCCCAGCTCTGTA---------CACGGAGGAGGCCAAGGCCAATGCCAGGGCTACGAGCCCCAGGC--AAGGCCGTGACCCAAATGGAGGC-----TTTTAAACCCAAGCTCAGAGGTAAGAAGCCCACGGCCAGCACCTCCCGGCCCTCTGCGCCCTTGCC--GCCTCC-TCCGCACCACCCTCCC--GGCC---------------------------------------------------------------------GGCCTGCCCCTCTCCCCCTGGTTGCTTCCCTTGCTTGCTGCTGTCTCCTGATCTTCTCCTCTCTCCATTCCCAGGGT-CCTCAGTTTGTCTGCCTCTCACCTGTCTCGTCCTCTCATCCTGCGGCTTTACATGAG-TTTTCTTCC-G----TCTCCATCACCCAGCTTTCCTGGCATCCCCTCTACCCCCAGCTCTGTACACAAGGGTGTACATCTTTCTCCTTGACTCTG---TTCCTCTTGCTCTGGCTCTGCCTGTCTTTCTCTCTGCG---AGTAAGCCTGGGCTCTCA---CCATGGACCCTTCCGGACATCGCCGGGCTGCTCTCTGGCCC
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120940730 708 + 123690457 GCCTGCTGAGAGGCAGGGCAGGAGCTGAGACTCTAACCCCAGCCTGAACTCCAGACCCCTTACCCTATCCTGGACCCCAGACTCTCCCCCCA-AAGACTCAGACACCCAGAAATACAGAATGAAACTTGGTCCTGAAGCCAGACGGACAGCCTGGAAAGTGTGAGGAAGAGGAC---GGGGCCCCCGAG--GG-AACGTCTCCCACAGGCCTGGCATCCCTCCCTTCTCAGCTCTGTA---------CACGGAGGAGGCCAAGGCCAATGACAGGGCTACGAGCCCCAGGC--AAGGCCGTGACCCAAGTGGAGGC------TTTAAACCCAAGCTCAGAGGTAAGAAGCCCA----CCGCACCTCCCGGCCCTCTCCGCCCT-GCC--GCCTCC-TCCGCACCGCCCTCCC--GGCC---------------------------------------------------------------------GGCCTGCCTCTCTCCTCCTTGTCGCTTCCCTCGCTTGCTGCTGTCTCCTGATCTTCTCATCTCTCCATTCCCAGGGT-CCTCAGTTTGTCTGTCTCTCACCTGTCTCGTCCTCTCACCCTGCGGCTTTATAAGAG-TTTTCTTCC-AGAATTCTCCATCACCCAGCTTTCCTGGCATCCCCTCTACCCCTGGCTCTGTACACAAGGGTGTACATCTTTCTCCTTGACTCTG---TTCCTCTTGCTCTGGCTCTGCCTGTCTTTCTGTCCGCG---AGTAAGCCTGGGCTCTCA---CCATGGGTCCTTGCAGACATCATC-GGCTGctctctggccc
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       90107 772 +    111706 GCCTGCT--GAGGCAGGGCAGGAGCTGAGACTCGAACTCTGGCTTCAACTCTGGACCCCTCACCCTCTCCTGGACCCCAGACGCT-CCCCCA-AAGACTCAGACACCCAGAAATACAGAATGAAACTTGGTCCCGAAGCCAGAGGGGCAGCCTGGAAGGTGTGGGGAAGAGGACT-GGGGGCCCCGGAG--GG-AACGTCTCCCACAGGCCTGGCATCCCTTCCCTGCCGGCTCTGTA---------CATGAAGGAGGCCAAGGCCAGTGCCA-GGCTGCGAGCCCCAGGC--AAGGCCGTGACCCAGGTGAAAGC-----TTTTAAACCCAAGCTCAGAGGCAAGAAGCCCACGGCCAGCACCTCCTGGCCCTCTCCGCCCT-GCC--GCCTCC-TCCACACCGCCCT-CC--AGCCGGCCTGCCTCTCCTCCTTGTCGCTTCCCTCGGTTGCTGCTGTCTCCTTCCTCCACACCACCCTCCAGCTGGCCTGC--CTCTCCTCCTCGTCGCTTCCCTCGGTTGCTGCTGTCTCCCGATCGTCTCCTCTCTCCATTCCCAGGGTGTGTCAGTTTGTCTGTCTCTCACCTGTCTCGTCCTCTCACCCTGCGGCTTTATTTGAG-TTTTCTTCC-G----TCTTCATCACCCAGCTTTCCTGGCAT-CCCTCCACCCC-GGCTCTGTACACGG-GGTGTGCATCTTTCTCCTCGACTCTG---TTCCTCTTGCTCCGGCTCTGCCTGTCTTTCTCTCCGCG---AGTAAGCCCTGGCTCCCT---CCATAGATCCTTCCAGACATCGCCGGGCTGCCCTCTGGTTC
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                121191 705 + 192460366 GCCTGCT--GAGGCAGGGCAGGAGCTGAGACTCGAACTCTGGCTTCAACTCTGGACCCCTCACCCTCTCCTGGACCCCAGACGCT-CCCCCG-AAGACTCAGACACCCAGAAATACAGAATGAAACTTGGTCCCGAAGCCAGAGGGGCAGCCTGGAAGGTGTGGGGAAGAGGACT-GGGGGCCCCGGAG--GG-AACGTCTCCCACAGGCCTGGCATCCCTCCCCTGCCGGCTCTGTA---------CATGGAGGAGGCCAAGGCCAGTGCCA-GGCTGCGAGCCCCAGGC--AAGGCCGTGACCCAGGTGAAAGC-----TTTTAAACCCAAGCTCAGAGGCAAGAAGCCCACGGCCAGCACCTCCTGGCCCTCTCCGCCCT-GCT--GCCTCC-TCCACACCGCCCT-CC--AGCC---------------------------------------------------------------------GGCCTGC--CTCTCCTCCTCGTCGCTTCCCTCGGTTGCTGCTGTCTCCCGATCGTCTCCTCTCTCCATTCCCAGGGTGTGTCAGTTTGTCTGTCTCTCACCTGTCTCGTCCTCTCACCCTGCGGCTTTATTTGAG-TTTTCTTCC-G----TCTTCATCACCCAGCTTTCCTGGCATCCCCTCCACCCT-GGCTCTGTACACAGCGGTGTGCATCTTTCTCCTCGACTCTG---TTCCTCTTGCTCCGGCTCTGCCTGTCTTTCTCTCCGCG---AGTAAGCCCTGGCTCCCT---CCATAGATCCTTCCAGACATCGCCGGGCTGCCCTCTGGTTC
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                118487 703 - 187378091 GCCTGCT--GAGGCAGGGCAGGAGCTGAGACTCAAACTCTGGCTTCAACTCCGGACCCCTCACCCTCTCCTGGACCCCAGACGCT-CCCCCG-AAGACTCAGACACCCAGAAATACAGAATGAAACTTGGTCCCGAAGCCAGAGGGGCAGCCTGGAAGGTGTGGGGAAGAGGACT-GGGGGCCCCGGAG--GG-AACGTCTCCCACAGGCCTGGCATCCCTCCCCTGCCGGCTCTGTA---------CATggaggaggccaaggccagtgccA-GGCTACGAGCCCCAGGC--AAGGCCGTGATCCAAGTGAAAGC-----TTTTAAACCCAAGCTCAGAGGCAAGAAGCCCACGGCCAGCAcctcctggccctcgccgccct-gcc--gcctcc-tccacactgccct-cc--agcc---------------------------------------------------------------------ggcctgc--ctctcctcctTGTCGCTTCCCTCGGTTGCTGCTGTCTCCCGATCGTCTCCTCTCTCCATTCCCAGGGTGTGTCAGTTTGTCTGTCTCTCACCTGTCTCGTCCTCTCACCCTGTGGCTTTATTTGAG-TTTTCTTCC-G----TCTTCATCACGCAGCTTTCCTGGCGTCTCCTCCACCCC-GGCTCTGTACACAGGGCTGTGCATCTTTCTCCTCGA--CTG---TTCCTCTTGCTCTGGCTCTGCCTGTCTTTCTCTCCGCG---AGTAAGCCCTGGCTCCCT---CCACAGATCCTTCCAGACATCGCCGGGCTGCCCTCTGGTTC
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               470807 683 -  91754291 GCCTGCT--GAGGCAGGGCAGGAGCTGAGACTCGAACTCTGGCTTCGACTCCAGACCCCTCACCCTCTCCTGGACCCCAGACGCT-CCCCCG-AAGACTCAGACACCCAGAAATACAGAATGAAACTTGGTCCCGAAGCCAGAGGGGCAGCCTGGAAGGTGTGGGGAAGAGGACT-GGGGGCCCCGGAG--GG-AACGTCTCCCACAGGCCTGGCATCCCTCCCCTGCCGGCTCTGTA---------CATGGAGGaggccaaggccagtgcca-ggctacgagccccaggc--aaggccGTGACCCAGGTGAAAGC-----TTTTAAACCCAAGCTCAGAGGCAAGAAGCCCACGGCCAGCACCTCCTGGCCCTCTCC--------------------------GTCCT-CC--AGCC---------------------------------------------------------------------GGCCTGC--CTCTTCTCCTCGTCGCTTCCCTCGGTTGCTGCTGTCTCCCGATCGTCTCCTCTCTCCGTTCCTAGGGTGTGTCAGTTTGTCTGTCTCTCACCTGTCTCGTCCTCTCACCCTGCGGCTTTATTTGAG-TTTTCTTCC-G----TCTTCATCACCCAGCTTTCCTGGCATCCCCTCCACCCC-GGCTCTGTACACAGGGGTGTGCGTCTTTCTCCTCGACCCTG---TTCCTCTTGCTCTGGCTCTGCCTGTCTTTCTCTCCGCG---AGTAAGCCCTGGCTCCCT---CCATAGATCCTTCCAGACATCGCCGGGCTGCCCTCTGGTtc
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               982741 621 -  74750902 TCCGGCT--GAGAC------------------------------TTAACTCCTGACTCCTCACGCTCTCCTGGACCCCACACACT-CCCCCAGAAGCCTCTGACACCCAGAAATACAGCAGGAAGCTTGATCCTGAAGCCAGAGGGACAGCCTGAGAAGTGCTGGGAGGAGGTCTGGGGGGCGCCAGAG--GGAAACGTCCCCCGCAGGCCCTGCATCCC-CCGTCCCTGGCTCTGCATGGAA--GGCATGGAGGGGGCCGAGGCCAAGGCCAGGGCTATGAGCCCCACAC--AAGGCC-TGACCCCAGCAGAGGC------TCTAACCCCAGGCTCAGAGGTGAGAAGCCTGTGGCCAGCCTCCCCCAGGCCTCCCAGCCCT------GCCTCC-TCCTCACCGCCCT-CC--AGGCCGC------------------------------------------------------------------GGCCT----CTCTCCTCC-----GCTCCCTGCGGTT-CTGCCATCTCCTGGTCACCTCCTCT-------------GTGCTTCGGTACGTCTGTCTCTCCCTTGCCTCACCCTCTCGCGCTGCGGCTTTACCTGAGATTTTCTCCC-A----GGTCCATCAC-CAGCTTTCCTG-------------------------------------------TTTTCCTTGGCACCGTTTTTCCTCTTGCTACAGCTCTGCCTGTCTTTCTCTCCACG---AGGAAGCCTGGGCTCCCC---CCAGGGACCCTTCCAGACCTGGCCGGGCTTCTCTCTGG--C
i calJac3.chr17            C 0 C 0
s mm10.chr16                65470494 605 -  98207768 GCTTGTT--GAGATTCTAGAGGGGCTCTCACTCTGACTTTGGTCTGGGCT------------------CCCAAGCCTCAG--CCT-TCCCAG-AACACTCAGACGCCCCTATGCACAGAATGAAACCCCAACTGGCAGTCAGGCCAGCAGCTGGGAAGGTGACAGGAAGGAGTCT-CAGGGACCTGGAG-----AACATCTCCAGCAGGCCCTGTG-CCCACCACCCTGAACCCTGGG---------CAT--AGGTATGCAAAGCCAAGGCT--GGC-----------AGC--ATGGTTTTGAAATAGCAGGAGGCTGGGTTTTTGAGAC--AGCTCACTGAC----------TGCTCTGAGCATCTCAGCTGCCTCTGCCCACGCCCGGCTTTCGTTCCCACCATCCT-CCAAAACC---------------------------------------------------------------------GACCCAC--CTC------------CTTCCTTT-----CTTCTA-----CAATTTTCTCCTTT----ATGGCCACATT-CTTTAGCTCATTTATTTCTCACCCATCTTGTTTTCTGCTGTGACATCTCTGTAAGAG-TTCTCTTTT------TCTCCTGTGAGCAGATTTTCTGATTTTCCCTTTA-----GAGTCT------------------------------CTCCA---ACTCTCTCACTATGGTCCTGCCTCTTTCACTTTCTATGTAAATGAAGTTCTGGTCCCCTTCACCATAGGTTCCCCAAG------CCAGGCCACCTTTTGCCCC
i mm10.chr16               I 1765 I 7
s canFam3.chr33             29110730 410 +  31377067 ---------GAGGAGGGGAACGAGCTGCCATTATTTCTTTGATTTGGGCTTCTGGCCCCTCATCCTCTCTGGGCCGCCAGA-GCC-TCACAG-AAGACCCTGACACCCGGAAATACA--------CCCCCCTCTG--------------GCTCGG--GGTGCGGGGGCGGAG----AGGGGCTCGGCAGGTGG-AGCTTCCCCAGCCGGCCTTGCTCCCAGCCCTCACCGG------AGGGAAGCGGCCCGCGGGAGGCCAAGACCAACAGAG-GCCTGTGCGCCCTGCCCCGAGGGCCGC-AGTCGGGAGGAGGC-----TGCTCAGTCCCAGGTCAGGGGCCAGAAGCCAACCGCTG------------------------------GGCGCC---------------TC--AGCG---------------------------------------------------------------------GGCCTCT--GTCCCGGCCTGGTGGC-----------------------------------------------------------------------------------------------------------GAG-CCCGCTGCCTG----TGTCC-----------TTCTTGGCCTCTCC---------------------------------------------CTCCA---GGCCTGCGGCCTC--CTCCGCCTGTCCCCTTCCC---------------------------------------------------------------------
i canFam3.chr33            C 0 C 0
e ponAbe2.chr3             199829116 6447 + 202140232 M

a score=274117.000000
s hg38.chr3_KI270935v1_alt    180876 171 +    197351 tctgttctcttttctctctctttcgagcattctccctctgtctttcccctcagatcttgtcccgtatctgccagttcatgcct-cctcttccccacttttctcctcttcttattttttatttta--ttttatatttatttatttatttatttatttattta--------------tttatttattt-at
s panTro4.chr3             199818829 151 + 202329955 TCTGTCCTCTTTTCTCTCTCTTTCGAGCATTCTCCCTCTGCCTTTCCCCTCAGATCTTGTCCCGTATCTGCCAGTTCATGCCT-CCTCTTCCCCACTTTTCTCCTCTTCttattttttatttta--tttta--------------------tatttattta--------------tttatttattt-gt
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120941438 147 + 123690457 tctgtcctcttttctctctctctccagcattctccctctgtctttcccctcagatcttgtcctgtatctgccagttcacgcct-cctcttccccacttttctcctcttctcatttttaatttta--tttta------------------------tattta--------------tttactcattt-at
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       90879 142 +    111706 TCTGTCCTCTTTTCTCTCTCTTTCGAGCATTCTCC--CTGTCTTTCCCCTCAGATCTTGTCCCGTATCTGCCAATTCACACCT-cctcttccccacttttcccctcttcttatttc----ttat--ttatt------------------------tattta--------------tttatgtatttaat
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                121896 146 + 192460366 TCTGTCCTCTTTTCTCTCTCTTTCGAGCATTCTCC--CTGTCTTTCCCCTCAGATCTTGTCCCGTATCTGCCAATTCACACCT-CCTCTTCCCCACttttcccctcttcttatttcttatttat--ttatt------------------------tattta--------------tttatttatttaat
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                119190 146 - 187378091 TctgtcctcttttctctctctttcgaGCATTCTCC--CTGTCTTTCCCCTCAGATCTTGTCCCGTATCTGCCAATTCACACCT-CCTCTTCCCCACTTTTCCCctcttcttatttcttatttta--ttatt------------------------tattta--------------tttatttatttaat
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               471490 145 -  91754291 tctgtcctcttttctctctctttcgagcattctct--ctgtcctt-ccctcagatcttgtcccgtatctgccaattcacacct-cctcttccccactcttcccctcttcttatttcttatttta--ttatt------------------------tattta--------------tttatctatctaat
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               983362 146 -  74750902 TCTGTCCTCTCT--TCTGTCTTTCAAGCATTCTCA-----TCTTTCTGCTCACACCTTGTCCTGTACCTGCCAATTCACACCT-CCTCTTCCCCAC---------CCTCTTCTTTTTTATTTGAATTGATT------------------------TATTTGAGATGGAGTCTCACTCTGtttgttt--g
i calJac3.chr17            C 0 C 0
s canFam3.chr33             29111140 122 +  31377067 ------CTCctctctctctctctc------tctct--ctctctACCCCCTCACGTTGATTCCTCTAC-------TTCTCACCTGTCTTTTCCTCTGACTCTGCATCTTCTTTtttttt-tttaa--gattt------------------------tattta--------------tttattcat-----
i canFam3.chr33            C 0 I 209
e mm10.chr16                65471099   7 -  98207768 I
e ponAbe2.chr3             199829116 6447 + 202140232 M

a score=590944.000000
s hg38.chr3_KI270935v1_alt    181047 277 +    197351 tttgagacagagtctcgctctctctcccaggctggagtgc-agtggcgcgatcttggctcactgcaacctccacctcccaggttcaagtgattctcctgcctcagactcctgagtagctggaattacaggtggggcccaccacgaccggctaatttttgtatatttagtagagacggggtttcaccatgtcggccaggctggtctcgaactcctgacctcaggtgat-ctcctgccttggcctccgaaagtgctgggattacaggcatgagccaccgcg
s panTro4.chr3             199818980 277 + 202329955 tttgagacagagtctcgctctctctcccaggctggagtgc-agtggcgcgatcttggctcactgcaacctccacctcccaggttcaagtgattctcctgcctcagactcctgaatagctggaattgcaggtgcggcccaccacgaccggctaatttttgtatatttagtagagacggggtttcaccatgtcggccaggctggtctcgaactcctgacctcaggtgat-ctcctgcctcggcctccgaaagtgccgggattacaggcgggagccaccgcg
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120941585 278 + 123690457 tttgagacagagtctcgctgtctctcccaggctggagtgcaagtggcgtgatctcagctcactgcaacctccacctcctgagttcaagtgattctcctgcctcagcctcctgagtagctggaattacaggcacctgccaccacgcccggctaatttttgtatatttagtagagatggggtttcaccttgttggccaggctggtgtcaaactcctgacctcaggtgat-ggcctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcg
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       91021 275 +    111706 tttgagacagagtctcactctctctcccaggctggcgtgc-agtggcgcaatctcagctcactgcaaccttcacctcccgggttcaagcgattctcctacctcagcctcctgagtagctggaattacacgcatgtgccatcacgcccggctaatttttgtatattttgtagagacggggtttctccatgttggccaggctggtctcaaactcctgacctcaggtagt-cgcccgcctcagcctcccaaagtgctgggatgacaggcgtgagccac--cg
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                122042 275 + 192460366 tttgagacagagtctcactctctctcccaggctggcgtgc-aatggcgcaatctcagctcactgcaaccttcacctcccgggttcaagcgattctcctacctcagcctcctgagtagctggaattacacgcatgtgccatcacgcccggctaatttttgtatattttgtagagacggggtttctccatgttggccaggctggtctcaaactcctgacctcaggtagt-cgcccgcctcagcctcccaaagtgctgggatgacaggcgtgagccac--cg
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                119336 273 - 187378091 tttgagac--agtctcactctctctcccaggctggtgtgc-aatggcgcgatctcagctcactgcaaccttcacctcccgggttcaagcgattctcctacctcagcctcctgagtagctggaattacaggcatgtgccatcacgcccggctaatttttgtatattttgtagagacggggtttctccatgttggccaggctggtctcaaactcctgacctcaggtaat-cgcccgcctcggcctcccaaagtgctgggatgacaggcatgagccac--cg
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               471635 275 -  91754291 tttgagacagagtctcactctctctcccaggctggcgtgc-aatgacgcgatctcagctcaccgcaaccttcacctcctgggttcaagcgattctcctacctcagcctcctgagtagctggaattacaggcatgtgccatcatgcccggctaatttttgtatattttgtagagacggggtttctccatgttggccaggctggtctcaaactcctgacctcaggtaat-cgcccgcctcggcctcccaaagtgctgggatgacaggcgtgagccac--cg
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               983508 276 -  74750902 tttgagacggagtcttgctct-gccaccaggctggagtgc-agtggctccatctcggctcaccgcaacctctccctcccaggttcaagcaattct-ctgcctcagcctcctgagtagctgggactacaggtgtgcgccaccacacctggctaatgtttgtatttttagtagcgatggggtttcaccatgttggtcaggcttgtcttgaactcctggcctcaagtgatccacccgccttggcctcctgaagtgctgggattaaaggcttgtgccccggcg
i calJac3.chr17            C 0 C 0
e mm10.chr16                65471099   7 -  98207768 I
e canFam3.chr33             29111262 209 +  31377067 I
e ponAbe2.chr3             199829116 6447 + 202140232 M

a score=26300.000000
s hg38.chr3_KI270935v1_alt    181324 19 +    197351 cacggcctccactcttctt
s panTro4.chr3             199819257 19 + 202329955 ctcggccTCCACTCTTCTT
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120941863 19 + 123690457 cccggcctccactcttctt
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       91296 17 +    111706 tctggc--cctctcttctt
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                122317 17 + 192460366 TCTGGC--Cctctcttctt
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                119609 17 - 187378091 tctggc--cctgtcttctt
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               471910 17 -  91754291 tctggc--cctctcttctt
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               983784 19 -  74750902 ccaagccTCCCCTCTTCGT
i calJac3.chr17            C 0 C 0
s canFam3.chr33             29111471 19 +  31377067 AGCAGCCTCCCTCCTCCTC
i canFam3.chr33            I 209 C 0
e mm10.chr16                65471099  7 -  98207768 I
e ponAbe2.chr3             199829116 6447 + 202140232 M

a score=2223130.000000
s hg38.chr3_KI270935v1_alt    181343 891 +    197351 tctctctccctcttctcttcctcttc-tttccctctctgggtctctct---------ccaccttccccccatgttgtc---ccattcatctc-----tttctcctttccctctccctctttt--tctctcccttctcttcctcttcgctg---tctccctttcccctattctctctctctctctctctgtctcCCCGGAC--CTCTTTCTCTGA---CAGCTCCCACCTCCCCCAAGTGCTCCCCGCAGCCAGCCTCATCTGCTGTCTC-----CATCACTTACCTGGGACCACATGCGGAAGGAGGCAGAGACACAGGCAGCTCAGGGACACCCAGGGGACCCTCCTCCAGCGTGCCCCCTTCATGGCTGCGGCAAAAGTCCCCCTGGCTCCCTGGGGAAGCTCCACGGC-CCAGCAGCTGCA-GTGTGAGGAGCAGACGTGAGCCCGTCCCCTCAGGCGGCT--GGCCCGAACCAAGTGCGTTTCTCCGAAGGGGCCA----GGGAACCT--GGGAAGAGGACAAAAGAGGGCGGGGCCCCACGCTAAT----------CACC---------CTTTTCTCTCCTCAG-CCCCACCC---------CACTACCCCACCAGGAA----AGAA------AACACCGATACACCCGTTGCTCTGCTTCTCATCAGCCTGAG-CTGAGTGGCGGGAGGGATGGGAGGAGACATG-----------GGGGAATGGGAACAGGTCACACTGGAAATGGGTGGGCCACCCTCCTAGCCG-GGTTCC-TGGGTCCTCTCCTCCCTCCCCAGGGGCTGCCCCTGTCCCA-CCAGAGCTTTGGGCTGCT---------------------------------------GG---------GAAGAATGGG---------GAAGAAAGGGC--CCCAGAGGGAGCGACCTT-GGGGCTGTATGAA-TGGGGGAAAGAGAGTGAGACTTAAGCAGACCCCAAGGAA----TTGGGAAGC--GGGGAACCATGTGGG-TGAGGGGCAGGAA-CAGAAATGCACTGTATGC
s panTro4.chr3             199819276 863 + 202329955 TCT-----------------------------CTCTCTGGGTCTCTCT---------CCACCTTCCCCCCATGTTGTC---CCATTCAtctc-----tttctcctttctctctccctctttt--tctcgcccttctcttcctcttcgctg---tctccctttcccctat--tctctctctctctctctgtctcCCCGGACCTCTCTTTCTCTGA---CAGCTCCCACCTCCTCCAAGTGCTCCCCGCAGCCAGCCTCATCTGCTGTCTC-----CATCACTTACCTGGGACCACATGCGGAAGGAGGCAGAGACACAGGCAGCTCAGGGACACCCAGGGGACCCTCCTCCAGCGTGCCCCCTTCATGGCTGCGGCAAAAGTCCCCCTGGCTCCCTGGGGAAGCTCCACGGC-CCAGCAGCTGCA-GTGTGAGGAGCAGACGTGAGCCCGTCCCCTCAGGCGGCT--GGCCCGAACCAAGTGCGTTTCTCCGAAGGGGCCA----GGGAACCT--GGGAAGAGGACAAAAGAGGGCGGGGCCCCATGCTAAT----------CACC---------CTTTTCTCTCCTCAG-CCCCACCC---------CACTACTCCACCAGGAA----AGAA------AACACCGATACACCCATTGCTCTGCTTCTCATCAGCCTGAG-CTGAGTGGCGGGAGGGATGGGAGGAGACATG-----------GGGGAATGGGAACAGGTCACACTGGAAATGGGTGGGCCACCCTCCTAGCTG-GGTTCC-TGGGTCCTCTCCTCCCTCCCCAGGGGCTGCCCCTGTCCCA-CCAGAGCTTTGGGCTGCT---------------------------------------GG---------GAAGAATGGG---------GAAAAAAGGGC--CCCAGAGGGAGCAACCTT-GGGGCTGTATGAA-TGGGGGAAAGAGAGTGAGACTTAAGCAGACCCCAAGGAA----TTGGGAAGC--GGGGAACCATGTGGG-TGAGGGGCAGGAA-CAGAAATGCACTGTATGC
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120941882 887 + 123690457 tctctctccctcttctcttcctcttc-tttccctctctgggtctctct---------ccaccttccccccaggttgcc---ccattcatctc-----tttctcctttctctctccctctttttctctctctcttctcttcctcttcgctg---tctccctttcccctattctctctctctctcCCCCCCCCCCCCCGTACCTTTCTTTCTCTGA---CAGCTCCCACCTCCCCCAAGTGCTCCCTGCAGCCAGCCTCACCTGTTGTCTC-----CATCACTTACCCGTGACCACATGCGGAAGGAGGCAGAGACACAGGCAGCTCAGGGACACCCAGGGGGCCCTCCTCCAGCGTGCCCCCCTCATGCCTGCGGCAAAAGTCCCTCTGGCTCCCTGGGGAAGCTCCACGGC-CCAGGAGCTGCA---GTGAGGAGCAGACGTGAGCCCGTCCCCTCCGGCGGCT--GGCCCGAACCAAGTGCGCTTCTCCGAAGGGGCCA----GAGAACCA--GGGAAGAGGACAAAAGAGGGCGGGGCCCCACGCTAAT----------CACC---------CTTTTCTCTCCTCAG-CCCCACCC---------CACTCCCCCACCAGGAA----AGAA------AACACCGATACACCTATTGCTCCGCTCCTCACCAGCCTGAG-CTGAGTGGCAGGAGGGACGGGAGGGGAC--------------GAGGGATGGGAACAGGTCACACTGGAAATGGGTGGGCCACCCTCCTAGCTG-GGTTCC-TGGGCCCTCTCCTCCCTCCCCAGGGGCTG-CCCTGTCCCA-CCAGAGCTTTGGGCTGCT---------------------------------------GG---------GAAGAATGGG---------GAAGAAAGGGC--CCCAGACAGAGTGACCTT-GGGGGTGTATGAA-TGGGGGAA--AGAGTGAGATTTCAGCAGACCCCAGGGAA----TTGGGAAGC--GGGGAACCATGTGGG-TGAGGGGCAGGAA-CAGAAATGCACTGTATGC
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       91313 891 +    111706 tctctctccctcttcccttcctcttc-tttccctctctgggtctctct---------ccaccctcccccCATGCTGT----CCATTCAtctc-----tttctcctttctctctctctctttt--tctctctcttctcttcctcttctctg---tctccgtttcccctgttctctctctttctct--------cCCCGGACCTCTCTTTCTCTGA---CAGCTCCCAGTTCCCCCATGTGCTCCCCACAGCCAGCCTCACCTGCTCTCTC-----CATCACTTACCTGGGACCACACGTGGAAGGAGGCAGAGACACAGGCAGCTCAGGGACACCCAGGGGACCCTCCTCCAGCGTGTCCCCTTCATGGCTGCCGCAAAAGTTCCTCTGGCTCCCTGGGGAAGCTCCAC-GC-CCAGGAGTTGCA-GTATGAGAAGCAGACGTGAGCCTGTCCCCTCCGGCGGCT--GGCCCGAACCAAGTGCGTTTCTCTGAAGGGGCCA----GAGAACCT--GGGAAGAGGACAAAAGAGGGCGGGGCCCCACACCAAT----------CAGG---------CTTTTCTCTCCTCAG-CCCCACCC---------CACTCCCCCACCAGGAA----AGAA------AATACCGGTGCACCCATTGCTCTGCTCCTCACCAGCCTGAGACTGAGTGGCAGGAGGGacgggaggagacacgggaggagacacgggGGACGGGAACAGGTCACACAGGAAATGGGTGGGCCGCCCTCCTGGCTG-GGTTCC-TGGGCCCTCTCCTCCCTCCCCAGGGGCTGCCCCTGTCCCA-CCAGAACTTTGGGCTGCT---------------------------------------GG---------GAAGAATGGG---------TAAGAAAGGGC--CGCAGAGGGAGCGACCTT-GCGGGTGTATGAA-GGGGGGAAAGAGAGTGAGATTTACGCAGACCCCAGGGAA----ATAGGAAGCG-GGGGAACCATGTGGG-TGAGGGGCAGGAA-CAGAAA-----TGTACGC
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                122334 890 + 192460366 tctctctccctcttcccttcctcttc-tttccctctctgggtctctct---------ccaccctccccccatgctgt----ccattcatctc-----tttctcctttctctctctctctttt--tctctctcttctcttcctcttctctg---tctccgtttcccctgttctctctctttctct--------ccccggacctctctttctctGA---CAGCTCCCAGTTCCCCCATGTGCTCCCCACAGCCAGCCTCACCTGCTCTCTC-----CATCACTTACCTGGGACCACACGTGGAAGGAGGCAGAGACACAGGCAGCTCAGGGACACCCAGGGGACCCTCCTCCAGCGTGTCCCCTTCATGGCTGCCGCAAGAGTTCCTCTGGCTCCCTGGGGAAGCTCCAC-GC-CCAGGAGTTGCA-GTATGAGAAGCAGACGTGAGCCTGTCCCCTCCAGCGGCT--GGCCCGAACCAAGTGCGTTTCTCTGAAGGGGCCA----GAGAACCT--GGGAAGAGGACAAAAGAGGGCGGGGCCCTACACCAAT----------CAGG---------CTTTTCTCTCCTCAG-CCCCACCC---------CACT-CCCCACCAGGAA----AGAA------AATACCGGTGCACCCATTGCTCTGCTCCTCACCAGCCTGAGACTGAGTGGCAGGAGGGacgggaggagacacgggaggagacacgggGGACGGGAACAGGTCACACAGGAAATGGGTGGGCCTCCCTCCTGGCTG-GGTTCC-TGGGCCCTCTCCTCCCTCCCCAGGGGCTGCCCCTGTCCCA-CCAGAACTTTGGGCTGCT---------------------------------------GG---------GAAGAATGGG---------TAAGAAAGGGC--CGCAGAGGGAGCGACCTT-GCGGGTGTATGAA-GGGGGGAAAGAGAGTGAGATTTACGCAGACCCCAGGGAA----ATAGGAAGCG-GGGGAACCATGTGGG-TGAGGGGCAGGAA-CAGAAA-----TGTACGC
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                119626 887 - 187378091 tctttctccctcttcccttcctcttc-tttccctctctgggtctctct---------ccaccctccccccatgctgt----ccattcatctc-----tttctcctttctctctccctctttt--tctctctcttctcttcctcttctctg---tctccgtttcccctgttctctccctttctct---------cccggacctctttttctctGG---CAGCTCCCAGTTCCCCCATGTGCTCCCCACAGCCAGCCTCACCTGCTCCCTC-----CATCACTTACCTGGGACCACACGTGGAAGGAGGCAGAGACACAGGCAGCTCAGGGACACCCAGGGGACCCTCCTCCAGCGTGTCCCCTTCATGGCTGCTGCAAAAGTTCCTCTGGCTCCCTGGGGAAGCTCCAC-GC-CCAGGAGTTGCA-GTATGAGAAGCAGACGTGAGCCTGTCCCCTCCAGCGGCT--GGCCCGAACCAAGTGCGTTTCTCTGAAGGGGCCA----GAGAACCT--GGGAAGAGGACAAAAGAGGGCGGGGCCCCACACCAAT----------CAGG---------CTTTTCTCTCCTcag-ccccaccc---------cactcccccaccAGGAA----AGAA------AATACCGGTGCACCCATTGCTCTGCTCCTCACCAGCCTGAG-CTGAGTGGCaggagggacgggaggagacacgggaggagacacgggggacgggaacaggtcacacaggaAATGGGTGGGCCGCCCTCCTGGCTG-GGTTCC-TgggccctctcctccctccccaggggCGGCCCCTGTCCCA-CCAGAACTTTGGGCTGCT---------------------------------------GG---------GAAGAATGGG---------GAGGAAAGGGC--CGCAGAGAGAGCGACCTT-GCGGGTGTATGAA-GGGGGGAAAGAGAGTGAGATTTAAGCAGA--CCAGGGAA----ATAGGAAGCG-GGGGAACCATGTAGG-TGAGGGGCAGGAA-CAGAAA-----TGTATGC
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               471927 891 -  91754291 tctctctccctcttcccttcctcttc-tttccctctctgggtctctct---------ccaccctccccccatgctgt----ccattcatctc-----tttctcctttctctctccctctttt--tctctctcttctcttcctcttctctg---tctccgtttcccctgttctctctctttctct--------ccctggacctctctttttctGA---CAGCTCCCAGTTCCCCCATGTGCTCCCCACAGCCAGCCTCACCTGCTCTCTC-----CATCACTTACCTGGGACCACATGTGGAAGGACGCAGAGACACAGGCAGCTCAGGGACACCCAGGGGACCCTCCTCCAGCGTGTCCCCTTCATGGCTGCCGCAAAAGTTCCTCTGGCTCCCTGGGGAAGCTCCAC-GC-CCAGGAGTTGCA-GTATGAGAAGCCGACGTGAGCCTGTCCCCTCCAGCGGCT--GGCCCGAACCAAGTGCGTTTCTCTGAAGGGGCCA----GAGAACCT--GGGAAGAGGACAAAAGAGGGCGGGGCCCCACACCAAT----------CAGG---------CTTTTCTCTCCTCAG-CCCCACCC---------CACTCCCCCACCAGGAA----AGAA------AATACCGGTGCACCCATTGCTCTGCTCCTCACCAGCCTGAG-CTGAGTGGCAGGAGGGACGGGAGGAGATACGGGAGGAGACACGGGGGATGGGAACAGGTCACACAGGAAATGGGTGGGCCGCCTTCCTGGCTG-GGTTCC-TGGGCCCTCTCCTCCCTCCCCAGGGGCGGCCCCTGTCCCA-CCAGAACTTTGGGCTACT---------------------------------------GG---------GAAGAACGGG---------GAGGAAAGGGT--CGCAGAGAGAGCGACCTT-GGGGGTGTATGAACGGGGGGAAAGAGAGTGAGATTTAAGCAGACCCCAGGGAA----ATAGGAAGCG-GGGGAGCCATGTAGG-TGAGGGGCAGGAA-CAGAAA-----TGTATGC
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               983803 808 -  74750902 tctctctccctgctctcttcctcttc-tctccctctctgggtctctct---------cccccttctccccatcgtgtc---ccattcatctc--------------------------------tctctctcttctcttcctcttctctg---tctccctttccgctcttctctctctcCCGGC------------------CTCTGTCTCTGA---CAGCCCCCAGCTCCCCCACAGGGTCCCAGCAGCCAGCCT----------CCC-----CGTCACTTACCCAGGACCATGTGTGGAAGGAGGCAGAGACACAGGCAGCTCAGGGACACCCAGGGGACCCTCCTCCAGCAGGACCCCCTCTTGGTTCCAACAAAAGTCCCTCCGGCTCCCTGGGGAAGCCCCATGGC-CTAGGAGCTGTG-GTGTGAGGAGCAGAACTGAGTCTGTCTTCTCCGGCGGCT--GGCCAGAACCAGGTGCATTTCCCTGAAGGGGCCA----GAGGACCC--GGGAAGAGGACAAAAGAGGGCGGGGCCCCACGCCAAT----------CACC---------CTTTTCTTTCCTCAG-CCCCACCC---------CACTCCCCCACCAGGAA----AGAA------AACACCAATACACCCATTTCTCTGCTCCTCATCAG-TTGAG-CCAAGTGG-GGGAGGGACAGGAGGAAACGTG-----------GGGGAACGGGAACAGGGCACA------------------CCCTCCTAGTTG-GATTTT-TGGGCCCTCTCCTTCCT-CCCAGGGGCTGCCC--GTCCCA-CCAGACATTTGGGCTGCT---------------------------------------GG---------GGAGAATGGA---------GAAGAAAGGGC--CCTAGAGGGAGCAACCTTGGGGGGTGTATGAA-TGGGGGAA--AGAGTAAGATTTAAGGAGACTCCAGGGAA----CAGGGAAGC---CGGGACGATGCCGG-TGAGGGGCAGGAA-CGGAAA-----TGCA--C
i calJac3.chr17            C 0 C 0
s mm10.chr16                65471106 885 -  98207768 TCTCTGTGCCTCTCTTCTTCTATTCC-TT---CTTTGTAACTGTCGTT---------CTAGTGTTTGCC------------CTATTAATCTCTTATCTTCCACCTTGTCCCATACCCACctc--tctctctc-tctctctctctt-tctt---cctccctcctcccctctctctcctttcctcc------------------cttcctctctGAAGCCAGCTCCCCTGCCCCAGACTTCTTTCCCACA-------------------TT-----CTTGTCTTACCAGGTA------GCAAGAGGAGGCAAGAATACAGGCAGCTCAGACACAGCCAGGGAAC---TCTCCAGTGAGGCCCTCTCATGGCTCCAG--AGAGTCCCTCAGGCTCCCTCAGGAATCCCCACAGCACTTGAGGTGGCA-GCAGGAGGAGCAGAGGCGAGCCTGTCCCCACTGGCTGCT--GGCCCCAAACAGGTGTATTTCCCTGAAGGGGTGAGAATGAGTACCAGGGGGAGGAGGACAAAAGAAGGCGTGGCCTCATGCCAATCATCCTTGCCCAGT---------CTTTTCTTTCCTCAATCCCCACCC---------CTTTCCCCCACCAGGAA----AAAATAAATTAATACCTGTACACCCATAGCTCTGCTCCTTGTCAACTTGAG-CCAAGTGGGAGGAGGGTAGGAGAGGGATGTG-----------GAGAAAGAGAAATGAGACTGGCGGGAAGAGAGAGGG-CACCTTCCTGCCTGTGGTCCC-TGAGATCTTTCCTCCCTCTCCTGGATCTGCAATGGCTACAGCTACAGTAGAAGGCAGCT---------------------------------------GGGTCACTTCAGAAGGAAGGGCAGAGATAATAGGGAAGAGCAGCACAGAGATAAAGAACTT-AAGGCTAGACTAA-CAGGAGAA--AAAGTGAGGTTTATAGGTACTATAATGAG---CATGGGGAGTGAGGGCAACTATATGTA-ATAAGGGGTGGAA-TAGAGATACCCTATACGC
i mm10.chr16               I 7 C 0
s canFam3.chr33             29111490 905 +  31377067 --TCCCGCCCTCT-------CTCTGCAGTTGCCCCTGCGGCTCTTTCTCAGCATGAACCCTGTTTCCCCAAGACTGCCCGGCCCCTGAGCGC-----CGCCCTGCTCCTCGCTGTCCCT-----ACACCCCCTTTGCTGGCTCTTCACCGGcctcccgctctcccccatctcgtccctcgcccc----------------ccccctccccccgc---cagccc--------------agccccccGCAGGCAGCC--ACCCCCTGCCCCAGGCGCATCACTCACCCGGGACCACGGGCCAGAGGAGGCAGGAACACAAGCAGCTCAGGAACACCCAGGGGACCCTTCTGCCCCGGGCCCCCCTCATGG-TCCAGCAAGGTTCCCTCGGGCCCCCCGGGCAAGCTCCGCAGC-ACA----CAGCAGGTGTGAGGAGCAGAGGAGAA----------CTGGCGGCTCAGGCTGGGGACAGGTGTATTTCCCTG-AGGGGCCA----GAGTATCA-GGGGAGGAGGACAAAAGAAGGCGGGGCCCCCTGCCAAT----------CAGCCTTGCCCGTCTTTTCTTTCCTCAATCTCCAACCGCCGCCGTTTATTCCCCCACCAGGAAAAAGAGAA------AACCCTGATCCACCTATTGATCTGCTCCCGGGCAACCTGAG-CTGCTTAGGGGGACGGTC------AGACAC------------------------CAGGGCACACTGGCAGCCAGCGGGCCACCCTTCTGCCTG-GAACCCGTGGGCCCTCCTGTCCCTCCCCAAGGGCTG-CCCTGTCCTG-CCAGGGCTTCGGGCTGCTACCAAGGGAGGCAGTGGGGTGGTTTCAGAAGAAAGGGAAGG---------GGAGAACGGA---------GAACACGGGGG--CCGAGAGGGAGTGAGTTT-GGGGCTGTATGAT-TTGGAGA---AGGGTGAGCTTTGAGGAGACCCTAAGGAGTCTCACAGGGAGTG-AGGGGACAATGCAGGCTGAGAGGTAGGCGTTGGAGATGCCCTGGATGC
i canFam3.chr33            C 0 I 300
e ponAbe2.chr3             199829116 6447 + 202140232 M

a score=104651.000000
s hg38.chr3_KI270935v1_alt    182234 43 +    197351 CGTCTTTTGGAAAGGGGTGGTGTGCTTGGAATATCTGCTCAGT
s panTro4.chr3             199820139 43 + 202329955 CGTCTTTTGGAAAGGGGTGGTGTACTTAGAATATCTGCTCAGT
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120942769 43 + 123690457 CATCTTTTGGAAAGGGGTGGTATGCTTAGAATATCTGCTCAGT
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       92204 43 +    111706 CATCTTTTGGAAAGGGGTGTTGTGCTTAGAATATCTGCTCAGT
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                123224 43 + 192460366 CATCTTTTGGAAAGGGGTGTTGTGCTTAGAATATCTGCTCAGT
i macFas5.chr2             C 0 I 2
s papAnu2.chr2                120513 43 - 187378091 CATCTTTTGGAAAGGGGTGTTGTGCTTAGAATATCTGCTCAGT
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               472818 43 -  91754291 CATCTTTTGGAAAGGGGTGTTGTGCTTAGAATATCTGCTCAGT
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               984611 34 -  74750902 CA--------AAGGGGGTGGTGTGCCTAGAA-GTCTGCCCAGT
i calJac3.chr17            C 0 C 0
s mm10.chr16                65471991 42 -  98207768 CATCTTTTGGAA-TGGGTGATGAGGTTAGACCATCAGCTCAGT
i mm10.chr16               C 0 C 0
e canFam3.chr33             29112395 300 +  31377067 I
e ponAbe2.chr3             199829116 6447 + 202140232 M

a score=3102.000000
s hg38.chr3_KI270935v1_alt    182277 2 +    197351 GC
s panTro4.chr3             199820182 2 + 202329955 GC
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120942812 2 + 123690457 GC
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       92247 2 +    111706 GC
i rheMac3.chrUn_JH291127   C 0 C 0
s papAnu2.chr2                120556 2 - 187378091 GC
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               472861 2 -  91754291 GC
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               984645 2 -  74750902 GT
i calJac3.chr17            C 0 C 0
s mm10.chr16                65472033 2 -  98207768 AT
i mm10.chr16               C 0 C 0
e canFam3.chr33             29112395 300 +  31377067 I
e macFas5.chr2                123267 2 + 192460366 I
e ponAbe2.chr3             199829116 6447 + 202140232 M

a score=27752.000000
s hg38.chr3_KI270935v1_alt    182279 15 +    197351 AGGCGCGTGGCAGAC
s panTro4.chr3             199820184 15 + 202329955 AGACGCGTGGCAGAC
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120942814 14 + 123690457 AGACGCATGGCAGA-
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       92249 15 +    111706 AGATGCATGGCAGAC
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                123269 15 + 192460366 AGATGCATGGCAGAC
i macFas5.chr2             I 2 C 0
s papAnu2.chr2                120558 15 - 187378091 AGATGCATGGCAGAC
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               472863 15 -  91754291 AGATGCATGGCAGAC
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               984647 15 -  74750902 AGACAGATGGTCGAC
i calJac3.chr17            C 0 C 0
s mm10.chr16                65472035 13 -  98207768 --CAGCATGTGAAAC
i mm10.chr16               C 0 C 0
e canFam3.chr33             29112395 300 +  31377067 I
e ponAbe2.chr3             199829116 6447 + 202140232 M

a score=8211.000000
s hg38.chr3_KI270935v1_alt    182294 4 +    197351 CCCA
s panTro4.chr3             199820199 4 + 202329955 CCCA
i panTro4.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       92264 4 +    111706 CCCA
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                123284 4 + 192460366 CCCA
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                120573 4 - 187378091 CCCA
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               472878 4 -  91754291 CCCA
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               984662 4 -  74750902 CCCA
i calJac3.chr17            C 0 C 0
e mm10.chr16                65472048 0 -  98207768 C
e canFam3.chr33             29112395 300 +  31377067 I
e ponAbe2.chr3             199829116 6447 + 202140232 M
e nomLeu3.chr11            120942828 0 + 123690457 C

a score=13086.000000
s hg38.chr3_KI270935v1_alt    182298 14 +    197351 GACGCGTGGCAGAC
s panTro4.chr3             199820203 14 + 202329955 GACGCGTGGCAGAC
i panTro4.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       92268 11 +    111706 GACGCATGGCT---
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                123288 14 + 192460366 GACGCATGGCTGAC
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                120577 14 - 187378091 GACGCATGGCAGAC
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               472882 14 -  91754291 GACACATGGCAGAC
i chlSab2.chr15            C 0 C 0
e mm10.chr16                65472048  0 -  98207768 C
e canFam3.chr33             29112395 300 +  31377067 I
e calJac3.chr17               984666  0 -  74750902 C
e ponAbe2.chr3             199829116 6447 + 202140232 M
e nomLeu3.chr11            120942828  0 + 123690457 C

a score=51745.000000
s hg38.chr3_KI270935v1_alt    182312  96 +    197351 CC------CAGACGCGTGGCAGACCCCAGACGCGTGGCAGAACCTCAGTGCAGATGCGTGGCAGACCCCAGACGCACGGCAGATCC------------------------------------------------------------------CAGACACATGGCAGAC
s panTro4.chr3             199820217 162 + 202329955 CC------CAGACGCATGGCAGACCCCAGACGCATGGCAGACCCTCAGTGCAGACGCGTGGCAGACCCCAGACACATGGCAGACCCTCAGTGCAGATGCGTGGCAGACCCCAGATGCGTGGCAGACCCCAGACGCATGACAGACCCTCAGTGCAGACGCGTGGCAGAC
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120942828  96 + 123690457 CC------CAGACACATGGCAGACCCTAGACGCATGGCAGACCCTCAGTGCAGACGCGTGGCAGACCCCAGACGTGTGGCAGACCC------------------------------------------------------------------CAGACGCATGACAGAC
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       92279  39 +    111706 ---------------------------------------GACCCTCAGGGCAGGCACGTGGCAGACC-----CTCAGGGCAGG-------------------------------------------------------------------------------------
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                123302 100 + 192460366 CCTCAGGGCAGGCGCGTGGCAGACCCCAGATGCGTGGCAGACCCTCAGGGCAGGCGCGTGGCAGACCC--GACGCATGGCAGACCC------------------------------------------------------------------CAGATGCGTGGCAGAC
i macFas5.chr2             C 0 T 32
s papAnu2.chr2                120591  97 - 187378091 CCTCAGGGCAGGCACGTGGCAGACCCCAGATGCATGGCTGACCCTCAGGGCAGGCGCGTGGCAGACCCCAGACGCGTGGCAGACCC------------------------------------------------------------------TCAGGGCAGGC-----
i papAnu2.chr2             C 0 C 0
e mm10.chr16                65472048   0 -  98207768 C
e canFam3.chr33             29112395 300 +  31377067 I
e calJac3.chr17               984666   0 -  74750902 C
e chlSab2.chr15               472896   0 -  91754291 C
e ponAbe2.chr3             199829116 6447 + 202140232 M

a score=-87.000000
s hg38.chr3_KI270935v1_alt    182408 4 +    197351 -CCCA
s panTro4.chr3             199820379 4 + 202329955 -CCCA
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120942924 4 + 123690457 -CCCA
i nomLeu3.chr11            C 0 C 0
s papAnu2.chr2                120688 2 - 187378091 GC---
i papAnu2.chr2             C 0 C 0
e rheMac3.chrUn_JH291127       92318 0 +    111706 C
e mm10.chr16                65472048 0 -  98207768 C
e canFam3.chr33             29112395 300 +  31377067 I
e calJac3.chr17               984666 0 -  74750902 C
e chlSab2.chr15               472896 0 -  91754291 C
e macFas5.chr2                123402 32 + 192460366 T
e ponAbe2.chr3             199829116 6447 + 202140232 M

a score=3003.000000
s hg38.chr3_KI270935v1_alt    182412 7 +    197351 GACCCAT
s panTro4.chr3             199820383 7 + 202329955 GACGCAT
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120942928 7 + 123690457 GACGCAT
i nomLeu3.chr11            C 0 M 176
s macFas5.chr2                123370 7 + 192460366 GACGCAT
i macFas5.chr2             T 32 C 0
s papAnu2.chr2                120690 2 - 187378091 -----GT
i papAnu2.chr2             C 0 C 0
e rheMac3.chrUn_JH291127       92318 0 +    111706 C
e mm10.chr16                65472048 0 -  98207768 C
e canFam3.chr33             29112395 300 +  31377067 I
e calJac3.chr17               984666 0 -  74750902 C
e chlSab2.chr15               472896 0 -  91754291 C
e ponAbe2.chr3             199829116 6447 + 202140232 M

a score=7897.000000
s hg38.chr3_KI270935v1_alt    182419 19 +    197351 GGCAGACTC------CAGACGCGTG
s panTro4.chr3             199820390 25 + 202329955 GGCAGACCCTCAGTGCAGACGCGTG
i panTro4.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       92318  6 +    111706 -------------------CGCGTG
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                123377 19 + 192460366 GGCAGACCC------CAGATGCGTG
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                120692 19 - 187378091 GGCAGACCC------CAGACGCGTG
i papAnu2.chr2             C 0 C 0
e mm10.chr16                65472048  0 -  98207768 C
e canFam3.chr33             29112395 300 +  31377067 I
e calJac3.chr17               984666  0 -  74750902 C
e chlSab2.chr15               472896  0 -  91754291 C
e ponAbe2.chr3             199829116 6447 + 202140232 M
e nomLeu3.chr11            120942935 176 + 123690457 M

a score=11730.000000
s hg38.chr3_KI270935v1_alt    182438 8 +    197351 GCAGACCC
s panTro4.chr3             199820415 8 + 202329955 GCAGACCC
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120943111 8 + 123690457 GCAGACCC
i nomLeu3.chr11            M 176 C 0
s rheMac3.chrUn_JH291127       92324 8 +    111706 GCAGACCC
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                123396 8 + 192460366 GCAGACCC
i macFas5.chr2             C 0 T 94
s papAnu2.chr2                120711 8 - 187378091 GCAGACCC
i papAnu2.chr2             C 0 I 6
e mm10.chr16                65472048 0 -  98207768 C
e canFam3.chr33             29112395 300 +  31377067 I
e calJac3.chr17               984666 0 -  74750902 C
e chlSab2.chr15               472896 0 -  91754291 C
e ponAbe2.chr3             199829116 6447 + 202140232 M

a score=42927.000000
s hg38.chr3_KI270935v1_alt    182446 50 +    197351 CAGACGCGTGGCAGACTC-----CAGACGCATGGCAGAACCTCAGTGCAGACTCG
s panTro4.chr3             199820423 50 + 202329955 CAGATGCGTGGCAGACCC-----CAGACGCATGGCAGACCCTCAGTGCAGACGCG
i panTro4.chr3             C 0 I 558
s nomLeu3.chr11            120943119 55 + 123690457 CAGATGCGTGGCAGACCTCAGTGCAGGCGCATGGCAGACCCTCAGTGCAGGCGCG
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       92332 45 +    111706 --GATGCATGGCAGACCC-----CAGACGCATGGCAGACCCTCAGGGCAGGC---
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                123310 50 + 192460366 CAGGCGCGTGGCAGACCC-----CAGATGCGTGGCAGACCCTCAGGGCAGGCGCG
i macFas5.chr2             T 94 C 0
s papAnu2.chr2                120725 34 - 187378091 CAGGCGTGTGGCAGACCC-----CAGACGCGTGGCAGAC----------------
i papAnu2.chr2             I 6 C 0
e mm10.chr16                65472048  0 -  98207768 C
e canFam3.chr33             29112395 300 +  31377067 I
e calJac3.chr17               984666  0 -  74750902 C
e chlSab2.chr15               472896  0 -  91754291 C
e ponAbe2.chr3             199829116 6447 + 202140232 M

a score=3996.000000
s hg38.chr3_KI270935v1_alt    182496 8 +    197351 TGGCAGAA
s panTro4.chr3             199821031 8 + 202329955 TGGCAGAC
i panTro4.chr3             I 558 C 0
s nomLeu3.chr11            120943174 8 + 123690457 TGGCAGAC
i nomLeu3.chr11            C 0 C 0
s macFas5.chr2                123360 8 + 192460366 TGGCAGAC
i macFas5.chr2             C 0 I 34
e rheMac3.chrUn_JH291127       92377 0 +    111706 C
e mm10.chr16                65472048 0 -  98207768 C
e canFam3.chr33             29112395 300 +  31377067 I
e calJac3.chr17               984666 0 -  74750902 C
e chlSab2.chr15               472896 0 -  91754291 C
e papAnu2.chr2                120759 0 - 187378091 C
e ponAbe2.chr3             199829116 6447 + 202140232 M

a score=1500.000000
s hg38.chr3_KI270935v1_alt    182504 1 +    197351 C
s panTro4.chr3             199821039 1 + 202329955 C
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120943182 1 + 123690457 C
i nomLeu3.chr11            C 0 C 0
s macFas5.chr2                123402 1 + 192460366 C
i macFas5.chr2             I 34 C 0
s papAnu2.chr2                120759 1 - 187378091 C
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               472896 1 -  91754291 C
i chlSab2.chr15            C 0 C 0
e rheMac3.chrUn_JH291127       92377 0 +    111706 C
e mm10.chr16                65472048 0 -  98207768 C
e canFam3.chr33             29112395 300 +  31377067 I
e calJac3.chr17               984666 0 -  74750902 C
e ponAbe2.chr3             199829116 6447 + 202140232 M

a score=34718.000000
s hg38.chr3_KI270935v1_alt    182505 25 +    197351 CTCAGTGCAGACGCATGGCAGACCC
s panTro4.chr3             199821040 25 + 202329955 CTCAGTGCAGACTCGTGGCAGACCC
i panTro4.chr3             C 0 I 896
s nomLeu3.chr11            120943183 25 + 123690457 CTCAGTGCAGGCACGTGGCAGACCC
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       92377 13 +    111706 ------------GCGTGGCAGACCC
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                123403 25 + 192460366 CTCAGGGCAGGCGCATGGCAGACCC
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                120760 25 - 187378091 CTCAGGGCAGGCGCGTGGCAGACCC
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               472897 25 -  91754291 CTCAGGGCAGGCGCGTGGCAGACCC
i chlSab2.chr15            C 0 C 0
s canFam3.chr33             29112695 21 +  31377067 CTCAGAATATCTGCTTAGCAC----
i canFam3.chr33            I 300 C 0
e mm10.chr16                65472048  0 -  98207768 C
e calJac3.chr17               984666  0 -  74750902 C
e ponAbe2.chr3             199829116 6447 + 202140232 M

a score=29501.000000
s hg38.chr3_KI270935v1_alt    182530 20 +    197351 CAGATGCGTGGCAGACCCTC
s nomLeu3.chr11            120943208 20 + 123690457 CAGATGTGTGGCAGACCCTC
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       92390 20 +    111706 CAGATGCGTGGCAGACCCTC
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                123428 20 + 192460366 CAGATGCGTGGCAGACCCTC
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                120785 20 - 187378091 CAGATGCGTGGCAGACCCTC
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               472922 20 -  91754291 CAGACGCATGGCAGACCCTC
i chlSab2.chr15            C 0 C 0
s canFam3.chr33             29112716 20 +  31377067 CAGACACACCATAGTGTCTC
i canFam3.chr33            C 0 C 0
e mm10.chr16                65472048  0 -  98207768 C
e calJac3.chr17               984666  0 -  74750902 C
e ponAbe2.chr3             199829116 6447 + 202140232 M
e panTro4.chr3             199821065 896 + 202329955 I

a score=12390.000000
s hg38.chr3_KI270935v1_alt    182550 5 +    197351 ACCAG
s nomLeu3.chr11            120943228 5 + 123690457 ACCAA
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       92410 5 +    111706 ACCAA
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                123448 5 + 192460366 ACCAA
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                120805 5 - 187378091 ACCAA
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               472942 5 -  91754291 ACCAA
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               984666 5 -  74750902 ACCAA
i calJac3.chr17            C 0 C 0
s canFam3.chr33             29112736 5 +  31377067 ACCAA
i canFam3.chr33            C 0 C 0
e mm10.chr16                65472048 0 -  98207768 C
e ponAbe2.chr3             199829116 6447 + 202140232 M
e panTro4.chr3             199821065 896 + 202329955 I

a score=1445885.000000
s hg38.chr3_KI270935v1_alt    182555 825 +    197351 ATGGTGGACTTCTTCTTTCCAGGgcagggagc-tggagccagggtgcagggagccagggacagTCTGGGAGACTGGCCTGAGGGAGCTGGCATGGGCAGTGGG-TTGAAGGCAGAACCTCGGTAGGAGGAA----GCGACTGTAACCT-GTGAGGAGGT---G-GAGCTGCTCCTGGAGACCTGGGGGCTCTGCTCACCCCAGTT-------------------CCACCTCTTGGAACTCACAGGCACAAGCGAGGAGGGAAAGGGACC----------------------CCAAGTAGGGT-TGTAAAG----ACGAAGAGGGCAG----TTGGTGTAGCTCTCTGCAAAGGAAAACGG-GGATACCTCCGCTCCCCTCTTTGCCACAGTGTGAATCTCTGCTTCTGATTCCTCAAGACTTGATTCCCGAATGTGGGGTG--TCTGTGGGGTGACTCGTCCCAGAGCAGGGACCTTCGATGCTCAGACACT-GTGGGGCCCAGGACAAGGACTCAGGGTTTCTGCATTCCCAAGCAGAGCCAGCCTTGTCCAGCAAGGAGTAGGCAACCGACGCTGTGGCGCTGTCTCCGAGG--GTCACGGAGGCCCTG---------TG-------ACCACTTGCTTCTAGAAGCTGAAAGTC------TGTTCATGG--CCCCAGGCCAAAGCCTGGGCCACGCCATAATAATGCGGATACCGTGGGGAAGTG------------GCGTGGT-CCCCCA---ACAGTCCCTCCAGCTCTGGGTGGACGAGCTGACCCTGTTCTTTCCTGGAGGTAAGAAAATCATAAAGGTAAAGAGTCATGTGGAGCATCCTGTGGGCGC--------------------------CTGGACGGGGCAGCAGGAGGGACCTACTGCAGGGAATTCGCAGACACCAAGGCCCAGCTTGGCCTTCGTGATCATTT
s nomLeu3.chr11            120943233 802 + 123690457 ATGGTGGACTTCTTT-----------------------CCAGGGTGCAGGGAGCCCGGGACAGTCTGGGAGACTGGCCTGAGGGAGCTGGCATGGGCAGTGGG-TTGAAGGTGGAACCTGGGTAGGAGGGA----GTGACTGTAACCT-ATGAGGAGGT---G-GAGCTGCTCCTGGAGACCTGGGGGCTCTGCTCACCTCAGTT-------------------CCACCTCTTGGAACTCACAGGCACAAGCGAGGAGGGACAGGGACC----------------------CCAAGCAGG-T-TGTGAAG----GTGAAGAGGGCAG----TTGGTGTAGCTCTCTGCAAAGGAAAACGG-GGATACCTCTGCTCCCCTCTTTGCCACAGTGTGAATCTCCGCTTCTGATTCCTCAAGACTTGATTCCCAAATGTGGGGTG--TCTGTGGGGTGACTGGTCCCAGAGCAGGGATCTTCAGTGCTCAGGCACC-GTGGGGCTCAGGACAAGGACTCCGGGTTTCTGCATTCCCAAGCAAAGCCAGCCTTGTCCAGCGAGGAGTAGGCAGCTGACGCTGTGGTGCCATCTCCGAGG--GTCATGGAGGCCCTG---------TG-------ACCACTTGCTTCTAGAATCTGAAAGTC------CGTTCATGG--CCCCAGGCCAAAGCCTGGGCCACGCCATAGTAATGCGGATACCGTGGGGAAGTG------------GCATGGT-CCCCCA---ACAGTCCCTCCAGCTCTGGATGGGCGAGCCGATCCTGTTCTTTTCTGGAGGTAAGAAAATCATGAAGGTAAAGAGGGATGTGGAGCATCCTGTGGGCGC--------------------------CTGGACAGGGCAGCAGGAGGGACATACTGAAGGGAATTTGCAGACACCAAGGCCCAGCTTGGCCTTCCTGATCAttt
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       92415 840 +    111706 ATAGTGGACTTCTTCTTTCCAGGGCAGGGAGC-CAGAGCTACGGTGCAGGGAGCCTGGGACAGTGTGGGAGGCTGGCCCGAGTGAGCTGGCGTGGGCAGTGGG-TTGAAGGTGGAACCTGGGTAGGAGGAGCAGTGCAGCTGTAACCC-ATGAGGAGGT---G-GAGCTGCTCCTGGAGACCTGGGGGCTCCGCTCACCCCAGTT-------------------CCACCTCTTGGAACTCACAGGCACAAGTGAAGAGGGACAAGGACC----------------------CCAAACAGGGT-TGTAAAG----GTGAAGAGGGCAG----TTGGTGTAGCTCTCCGCAAAGGCAAACGG-GGATACCTCCGCTCCGCTCTTTGCCACAGTGTGCATCTCTGCTTCTGGTTCCTCAGGACTTGAATCCTGAACGTGGGGTG--TCTGTGGAGTGACTGGTCCCAGAGCAGGGACTTCCGACACTCAGACACC-GTGGGGCCCAGGACGAGGAATCGGGGTTTCCGCATTCCCGAGCAGAGCCAGCCTCGTCCAGCGAGGATTAGGCAGCGGACGCCGTGGTGCCGTCTCTGAGA--GTCATGGAAGCCCTG---------TG-------ATCACTTGCTTCTAGAAGCTGAAAGTC------GGTTCATGG--CCCAAGGCCAAAGCCTG---CACGCCC--------AGGATACTGTGGGCAAGTG------------GTGTGGT-CCCCTA---ACAGTCCCTCCAGCTCTGGAT----GAGCTGATCCTGTTCTTTCCTGGAGGTAAGAAAGTCATAAAGGTAAGGAGGGATGTGGAGCATCCTGTGGGCGCCTGGGCAGGGCAGCAGGAGGGCACTACTGGGCAGGGCAGCAGGAGGGCACTACTGGAGGGAATTCGCAGACACCAAGGCCCAGCCTGGCCTTTGTGATCAttt
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                123453 840 + 192460366 ATAGTGGACTTCTTCTTTCCAGGGCAGGGAGC-CAGAGCTACGGTGCAGGGAGCCTGGGACAGTGTGGGAGGCTGGCCCGAGTGAGCTGGCGTGGGCAGTGGG-TTGAAGGTGGAACCTGGGTAGGAGGAGCAGTGCAGCTGTAACCC-ATGAGGAGGT---G-GAGCTGCTCCTGGAGACCTGGGGGCTCCGCTCACCCCAGTT-------------------CCACCTCTTGGAACTCACAGGCACAAGTGAAGAGGGACAAGGACC----------------------CCAAACAGGGT-TGTAAAG----GTGAAGAGGGCAG----TTGGTGTAGCTCTCCGCAAAGGCAAACGG-GGATACCTCCGCTCCGCTCTTTGCCACAGTGTGCATCTCTGCTTCTGGTTCCTCAGGACTTGAATCCTGAACGTGGGGTG--TCTGTGGAGTGACTGGTCCCAGAGCAGGGACTTCCGACACTCAGACACC-GTGGGGCCCAGGACGAGGAATCGGGGTTTCCGCATTCCCGAGCAGAGCCAGCCTCGTCCAGCGAGGATTAGGCAGCGGACGCCGTGGTGCCGTCTCTGAGG--GTCATGGAAGCCCTG---------TG-------ATCACTTGCTTCTAGAAGCTGAAAGTC------GGTTCATGG--CCCAAGGCCAAAGCCTG---CACGCCC--------AGGATACTGTGGGCAAGTG------------GTGTGGT-CCCCTA---ACAGTCCCTCCAGCTCTGGAT----GAGCTGATCCTGTTCTTTCCTGGAGGTAAGAAAGTCATAAAGGTAAGGAGGGATGTGGAGCATCCTGTGGGCGCCTGGGCAGGGCAGCAGGAGGGCACTACTGGGCAGGGCAGCAGGAGGGCACTACTGGAGGGAATTCGCAGACACCAAGGCCCAGCCTGGCCTTTGTGATCAttt
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                120810 810 - 187378091 ATGGTGGA---CTTCTTTCCAGGGCAGGGAGC-CAGAGCTACGGTGCAGGGAGCCTGGGACAGCGTGGGAGGCTGGCCCGAGGGAGCTGGCATGGGCAGTGGG-TTGAAGGTGGAACCTGGGTAGGAGGAGCAATGCAGCTGTAACCC-ATGAGGAGGT---G-GAGCTGCTCCTGGAGACCCGGGGGCTCCGCTCACCCCAGTT-------------------CCACCTCTTGGAACTCACAGGCACAAGTGAAGAGGGACAGGGACC----------------------CCAAACAGGGT-TGTAAAG----GTGAAGAGGGCAG----TTGGTGTAGCTCTCTGCAAAGGCAAACGG-GGATACCTCCGCTCCCCTCTTTGCCACAGTGTGCATATCTGCTTCTGGTTCCTCAAGACTTGAATCCTGAATGTGGGGTG--TCTGTGGAGTGACTGGTCCCAGAGCAGGGACTTCCGACACTCAGACACC-GTGGGGCCCAGAACGAGGAATC-GGGTTTCTGCATTCCCGAGCAGAGCCAGCCTTGTCCAGCAAGGATTAGGCAGCGGACGCCGTGGTGCCGTCTCTGAGG--GTCATGGAGGCCCTG---------TG-------ATCACTTGCTTCTAGAAGCTGAAAGTC------GGTTCATGG--CCCAAGGCCAAAGCCTG---CACGCCC--------AGGATACTGTGGGCAAGTG------------GTGTGGT-CCCCTA---ACAGTCCCTCCAGCTCTGGAT----GAGCTGATCCTGTTCTTTCCTGGAGGTAAGAAAGTCATAAAGGTAAGGAGGGATGTGGAGCATCCTGTGGGCGC--------------------------CTGGGCAGGGCAGCAGGAGGGCACTACTGGAGGGAATTCGCAGACACCAAGGCCCAGCTTGGCCTTTGtgatcattt
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               472947 814 -  91754291 ATGGTGGACTTCTTCTTTCCAGGGCAGGGAGC-CAGAGCTATGGTGCAGGGAGCCTGGGACAGTGTGGGAGACTGGCCCGAGGGAGCTGGCATGGGCAGTGGG-TTGAAGGTGGAACCTGGGTAGGAGGAGCAATCCAGCTGTAACCT-ATGAGGAGGT---G-GAGCTGCTCCTGGAGACCTGGGGGCTCCGCTCACCCCAGTT-------------------CCACCTCTTGGAACTCACAGGCACAAGTGAAGAGGGACAGGGATC----------------------CCAAACAGGGT-TGTAAAG----GTGAAGAGGGCAG----TTGGTGTAGCTCTCTGCAAAGGCAAACGG-GGATACCTCCGCTCCCCTCTTTGCCACAGTGTGCATCTCTGCTTCTGGTTCCTCAAGACGTGAATCCTGAACGTGGGGTG--TCTATGGAGCGACTGGTCCCAGAGCAGGGACTCCCGACACTCAGACACC-GTGGGGCCCAGGATGAGGAATCGGGGTTTCTGCATTCCCGAGCAGAGCCAGCCTTGTCCAGCGAGGATTAGGCAGCGGACGCCGTGCTGCCGTCTCTGAGG--GTCATGGAGGCCCTG---------TG-------ATCACTTGCTTCTAGAAGCTAAAAGTC------GGTTCATGG--CCCAAGGCCAAAGCCTG---CACGCCC--------AGGATACCGTGGGCAAGTG------------GTGTGGT-CCCCTA---ACAGTCCCTCCAGCTCTGGAT----GAGCTGATCCTGTTCTTTCCTGGAGGTAAGAAAGTCATAAAGGTAAGGAGGGATGTGGAGCATCCTGTGGGCGC--------------------------CTGGGCAGGGCAGCAGGAGGGCACTACTGGAGGGAATTCGCAGACACCAAGGCCCAGCTTGGCCTTTGTGATCAttt
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               984671 749 -  74750902 ATGGCAGA---GTTCTTTCCAAGACAGGGAGC-CAAAGCCGGGGTGCAGGGAGCCTGGGACCCTCTGGGAGAGTAGCCAGAGGGATCTGGCCTGGGCAGTGGG-C-------------------GGAGGGA----GCAGCTGTCACCT-ATGAGGAAGT---G-GAGTTGCTCCTGGAGACCCAGTGGCTCCGCTCACCCGGATT-------------------TGACCT-------GTCACAGG-ACAGGCAAGGAGGGGCAGGGACC----------------------CCAAGCAGGGT-CGTAAAG----GCAAAGAGGGCCG----TTGGTGTAGCTCTCTG-AAAGGGAAAC-A-GGACACCCCTGTACCCCTCTTTGC--CAGTGTG-ATTTCTGCTTCTGGTTCCTCAAGACTTGATTCCTGAATGTGGGGTG--TCTGTGGAGTGACTCGTCGCAGAGCAGGGACCTTAGGCTCCCAGACACC-ATGGAGCCCAGGATGAGCACTCGGGGTTTCTGCATTCCCAGGAGGAGCCAGCTTCGTCCAGCGA-GAGTCCACAGCGGACACTGTAGTGACATCTCCAAGG--GTCGTGGAGGTCCTG---------TG-------ACCACTT-------------------------------------CCCAAGGTCAAAGCCTG-----GGCCGTAACAATGCCAACACTGTGGAGAGG-A------------GCATGGT-CCCC-A---TCAGTCCCTCCAGCTCTTGATGGATGAGCTGACCCTGTTCTTTCCTGGGAGCAAGAAAGTTGTAAAGGTAAAGAGGGCTGTGGCGCATCCTGTGGGCAC--------------------------CTGAACAGGGCAGCAGGAGGGCACTGCCGAAGGGAGTCTGCAGAC-CCAGG--CCAGCGTGGCTCCTG-Gtttgttt
i calJac3.chr17            C 0 C 0
s mm10.chr16                65472048 806 -  98207768 ATGGTGGATGTCTTCTGTCTGGGACAGGGAGT-------------------ATCTGAGGATACTAGGGGAAAA-AGCTTAAAAGATTTGCCAAGGCTAGTAGG-GTTCACATAGAAACTAGGTAGAATGT-----TTTTTCATCACCC-----GGATGT---GAGGGGTGCCCCTAGAGAACTGGAGGTTTGAATCATCCTGTTTTGGAACTCACCAGCTTAGACAACCTCTCAGAACT--CAGACTGAAGCAAGGAAGGCTATGGACTTTGCTTTGCCAAGCAAAGTATGCCAGGCAGAAT-TCTGAAG----TTGATGGTGGTGGGATTTTGGTAAAGCTGTGTG---AAGAAAGAGG-GGA-GCTTTCTCCTTACCCTTAGCCACTGCACGAATCTCTGCTTCTAACACCTCAAGGCACCATTCGCTAGGAGTGGGTA--TCTGTGGAGTGACTGGTCCCAAAGCAAAGAC---------------------AGAGAGCAAGATAAGCA-TCGGCATTTTGGCCTTCTCAGGCAGAGCCAGCCTTGCTAAGGCAACAT--AGTGGCAG-----GTTGTTTCATTTCATAGACCGCCACCGAAGACCTC---------GGTAGGTCTAACACCTGCTGACCATGTCAGTAAGAC------ATTCCACGGGACCCAAA--CTACGCTTT---GACTCTA---TCATGTAAATGCTATGTGTATGTACTACAGAGACACATGTGAC-ATTCCAGGCACCTTCCACCTGATTATGAAC----AAAGTTACCTCATTGTTTT-TAGGAGCGGGAAAACCAT-ATGGTAGAGAAGGA------------TGTAAGTAC--------------------------CTTGACAGGGCAACAGGAAGTTGTCACTGAAAACAGCTTGCATA------GGTACA-CTTGACCTTAGGGGTCATTC
i mm10.chr16               C 0 C 0
s canFam3.chr33             29112741 837 +  31377067 ATGGTGGGTTTCTTCTTTCTAAAGGAGGGAACACAGAGCTGGGGTCCAGAGAGCCCAAGACAACCTGGGAAAGTGGCTTTAGGTATCTGGTATGGGTAGAGGGATTGAAGGTAGAGGCTGGGGAGAT--------GTCCTAGTGACCCTACAAGAAACTATGG-GATTCTCTTCTGGAAATCATAAGGCTCAGGTCACTCCATTT-------------------TTACGTTTTGGGACTTTCC--CACAGCCAAGAGGGAACAGGAACC----------------------CCAGACAGGGTGTGCCAGGTATAGTTATGAGGGCGGGAAGTGGGTGTAGC--TCCACAAAGGAAAACAGTGGAGATCTTCTC-CCACCCCTTGCCACAGCATGAATCTCTCCCTCTGGTTCCTCAAGACTTGGTTCCCT-GTGGGGGGTGGATCTATGGAGTGATTGATCCCAAAGCAGGGAGTTCAGGATCTCAAACACAGGCCCAGCCCAGGAC-AGGAATTAGCATTTCCACATTCCCAGGTGGAACGAGCCGTATCCAAAGAGGAGTAAACGGCCAATGCCATGATGC--TCTCAGAGG--ACCACGAAGGCCCCACCACCCTGTTG-------GCTTCTTACTTGCTGAAGCTTAAAATCCAATTACATCCAAGG--CATGAAGGCCAGACCTT---CCAGTTA---TAATGCGGATACTGCAGGAAAGTA------------GCACGGTGTCTCTA---TCAATCCTTTTACCTCCGCATGGATGAGCCGATCCCATTCTCTCCCGGGAGCAGGAAATTCATAAAGGCAAAGGGGGATTTCAGGCA----GAGAGTAT--------------------------CTAGACAGAACAGGAGGAGGATATCACTGAAGAGAATTTACAGATACCAAGGCCCAACTTGGTCTTCCTAATCATTT
i canFam3.chr33            C 0 I 48
e ponAbe2.chr3             199829116 6447 + 202140232 M
e panTro4.chr3             199821065 896 + 202329955 I

a score=-487.000000
s hg38.chr3_KI270935v1_alt    183380 19 +    197351 TGCAC----------ttt----ttttttttttt
s nomLeu3.chr11            120944035 24 + 123690457 tgtgct-----ttttttt----ttttttttttt
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       93255 20 +    111706 tgc---------tttttt----ttttttttttt
i rheMac3.chrUn_JH291127   C 0 I 1
s macFas5.chr2                124293 21 + 192460366 tgc--------ttttttt----ttttttttttt
i macFas5.chr2             C 0 I 1
s papAnu2.chr2                121620 24 - 187378091 tgcttt-----ttttttt----ttttttttttt
i papAnu2.chr2             C 0 I 1
s chlSab2.chr15               473761 15 -  91754291 tgc--------------t----ttttttttttt
i chlSab2.chr15            C 0 I 1
s calJac3.chr17               985420  2 -  74750902 tg-------------------------------
i calJac3.chr17            C 0 C 0
s mm10.chr16                65472854 33 -  98207768 TTTTATGACAGCTCTTTTCAGATTTAttatttt
i mm10.chr16               C 0 C 0
e canFam3.chr33             29113578 48 +  31377067 I
e ponAbe2.chr3             199829116 6447 + 202140232 M
e panTro4.chr3             199821065 896 + 202329955 I

a score=12618.000000
s hg38.chr3_KI270935v1_alt    183399 5 +    197351 gagat
s panTro4.chr3             199821961 5 + 202329955 gagac
i panTro4.chr3             I 896 C 0
s nomLeu3.chr11            120944059 5 + 123690457 gagac
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       93276 5 +    111706 gagac
i rheMac3.chrUn_JH291127   I 1 C 0
s macFas5.chr2                124315 5 + 192460366 gagac
i macFas5.chr2             I 1 C 0
s papAnu2.chr2                121645 5 - 187378091 gagac
i papAnu2.chr2             I 1 C 0
s chlSab2.chr15               473777 5 -  91754291 gaaac
i chlSab2.chr15            I 1 C 0
s calJac3.chr17               985422 5 -  74750902 gagac
i calJac3.chr17            C 0 C 0
s mm10.chr16                65472887 5 -  98207768 aaaat
i mm10.chr16               C 0 I 251
e canFam3.chr33             29113578 48 +  31377067 I
e ponAbe2.chr3             199829116 6447 + 202140232 M

a score=281141.000000
s hg38.chr3_KI270935v1_alt    183404 135 +    197351 ggagtcttgctctgtcgcccaggctggagtgcagtggcaccatctcagctcactgcaagctccgcctcccgggttcacgccattcccctgcctcagcctccctagtagctggga-ctacaggcacctgccaccacg
s panTro4.chr3             199821966 133 + 202329955 --agtcttgctctgtcgcccaggctggagtgcagtggcaccatctcagctcactgcaagctccgcctcccgggttcacgccattcccctgcctcagcctccctagtagctggga-ctacaggcacctgccaccacg
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120944064 135 + 123690457 ggagtcttgctctgtcgcccaggctggagtgcagtggcaccatctcagctcactgcaagctccgcctcccaggttcaagcaattctcctgcctcggcctcccgaatagctggga-ctacaggtgcccgccaccatg
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       93281 136 +    111706 ggagtctcactctgtcacgcaggttggagtgcggtggcaccttctgtattcactgcaagctccgcctcccaggttcaagcaattcccccgcctcagcctcccgagcagctgggatttacaggtgcccaccaccacg
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                124320 136 + 192460366 ggagtctcactctgtcatgcaggttggagtacggtggcaccatctctattcactgcaagctccgcctcccaggttcaagcaattcccccgcctcagcctcccgagtagctgggatttacaggtgcccaccaccacg
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                121650 136 - 187378091 ggagtctcactctgtcacccaggttggagtgcagtggcgcgatctctattcactgcaagctccacctcccaggttcaagcaattccaccgcctcagcctcccgagtagctgggatttacaggtgcccaccaccacg
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               473782 136 -  91754291 agagtctcgctctgtcacccaggttggagtgcggtggcaccatctctattcactgcaagctccacctcccaggttcaagcaattcccccgcctcagcctcccgagtagctgggatttacaggtgcccaccaccaca
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               985427 136 -  74750902 atagtcttgctctgtcgctgaggctggagtgcaatggcacaaccttggctcaccgcaacctctgcctctggagtccaagccattcccctgcctcagcttcccgagtagctgggatttacaggcacctgccactgcg
i calJac3.chr17            C 0 C 0
e mm10.chr16                65472892 251 -  98207768 I
e canFam3.chr33             29113578  48 +  31377067 I
e ponAbe2.chr3             199829116 6447 + 202140232 M

a score=308295.000000
s hg38.chr3_KI270935v1_alt    183539 146 +    197351 cccggctaa-ttttttttgtatttttagtagggacgaggtttcaccatgttggccaggttggtctcgaacccctgaactcagatgatccgcccgccttggcctcccaaagtgctgggattacaggcgtgagccactgcacccggc---cC
s panTro4.chr3             199822099 146 + 202329955 cccggctaa-ttttttttgtatttttagtagggacgaggtttcaccacgttggccaggttggtctcgaacccctgacctcagatgatccgcccgccttggcctcccaaagtgctgggattacaggcgtgagccactgcacccggc---cC
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120944199 143 + 123690457 cctggctaa--tttttttgtatttttagtagagacgggagttcaccatgttagccaggatggtctcgatctcctgacctc--atgatccacccacctcagcctcccaaagtgctgggattacaggcgtgagccacggcacccggc---cC
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       93417 150 +    111706 cccggctaatttttttttgtatttttagtagggacgaggtttcaccatgttggccaggctggtctcgaactcctgacctcagatgatccgcccgcctcggcctcccaaagtgctaggagtacaggcgtgagccaccacgcccggccTGCT
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                124456 150 + 192460366 cccggctaatttttttttgtatttttagtagggacgaggtttcaccatgttggccaggctggtctcgaactcctgacctcagatgatccgcccgcctcggcctcccaaagtgctaggagtacaggcgtgagccaccacgcccggccTGCT
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                121786 145 - 187378091 cccggctaa-ttttttttgtatttttagtagggacgagatttcaccatgttggccaggctggtctcgaactcctgacctcagatgatctgcccgcctcggccttccaaagtgctgggagtacagtcgtgagccaccgcgc----cctgcc
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               473918 146 -  91754291 cctggctaatttttttttgtatttttagtagggacgaggtttcaccatgttggccaggctggtctcgaactcctgacctcagatgatccgcccgcctcggccttccaaagtgctgggagtacaggcgtgagccaccgcgc----cctgcc
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               985563 125 -  74750902 cctggctaa-ttttttttgtatt-----------------ttcaccatgttgaccagactggtctcgaactcctgacctc--gcaatctgcccacctc--cctcccaaagtgctgggattacaggtgtaagccaccacacccagc---TC
i calJac3.chr17            C 0 C 0
s mm10.chr16                65473143 131 -  98207768 tctgtttat-ttccttttgagtt----gatgaaacggtgggtagctgtctagcccaggctggcctggaaatcttg----------attctcctgcctcagcct-ctacagtgttgggatttcaggaatgtgctaccatgactggc---tc
i mm10.chr16               I 251 I 246
e canFam3.chr33             29113578  48 +  31377067 I
e ponAbe2.chr3             199829116 6447 + 202140232 M

a score=101743.000000
s hg38.chr3_KI270935v1_alt    183685 45 +    197351 GTGGTCATTTTTC--TGTCAGCTCTTGCTCGTGGGTCCCCCCATTAC
s panTro4.chr3             199822245 45 + 202329955 GTGGTCATTTTTC--TGTCAGCTCTTGCTCGTGGGTCCCCCCATTAC
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120944342 47 + 123690457 GTGGTCATTTTTCTATGTCAGCTCTCGCTCGTGGGTCCCCCCATTAC
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       93567 47 +    111706 GTGGTCATTTTTCTATGTCAGCTCTTGCTTGTGGGTTCCCCCATTAC
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                124606 47 + 192460366 GTGGTCATTTTTCTATGTCAGCTCTTGCTTGTGGGTTCCCCCATTAC
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                121931 47 - 187378091 gtGGTCATTTTTCTATGTCAGCTCTTGCTTGTGGGTTCCCCCATTAC
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               474064 47 -  91754291 GTGGTCATTTTTCTATGTCAGCTCTTGTTTGTGGGTTCCCCTATTAC
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               985688 43 -  74750902 GTGATCATTTTTC--TGTCAGCTCTCGCTCATGG--TCCCCCATTAC
i calJac3.chr17            C 0 C 0
e mm10.chr16                65473274 246 -  98207768 I
e canFam3.chr33             29113578 48 +  31377067 I
e ponAbe2.chr3             199829116 6447 + 202140232 M

a score=15225.000000
s hg38.chr3_KI270935v1_alt    183730 10 +    197351 CTTTCCACAG
s panTro4.chr3             199822290 10 + 202329955 CTTTCCACAG
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120944389 10 + 123690457 CTTTCCACAG
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       93614  9 +    111706 CTTTCCA-AG
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                124653  9 + 192460366 CTTTCCA-AG
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                121978  9 - 187378091 CTTTCCA-AG
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               474111  9 -  91754291 CTTTCCA-AG
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               985731 10 -  74750902 CTTTCCATAG
i calJac3.chr17            C 0 C 0
s mm10.chr16                65473520 10 -  98207768 TTGTTCATTT
i mm10.chr16               I 246 C 0
e canFam3.chr33             29113578 48 +  31377067 I
e ponAbe2.chr3             199829116 6447 + 202140232 M

a score=333488.000000
s hg38.chr3_KI270935v1_alt    183740 164 +    197351 GTTTTGT-TTGGTGAC----GCTTTCAGGACAACAGTTTTCCATCTCTAGAGGAGAAA-GGAGCA-TCCAGGTGAGACCAAACTAAGCGCTGGACATCTTGTTGACCGAA---CACAG-GTAGCTGACCTCTTTCCCATGCCAGGAAGGCCAGAGGCACACAGCGCTCTCCGGAA
s panTro4.chr3             199822300 105 + 202329955 GTTTTGT-TTGGTGACAACAGTTTTCAGGACAACAGTTTTCCATCTCTAGAGGAGAAA-GGAGCA-TCCAGGTGAGACCA-------------------------------------------------------------------GGCCAGAGGCACACAGCGCTCTCTGGAA
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120944399 163 + 123690457 GTTTTGT-TTGGTGAC----GCTTTCAGGACCACAGTTTTCCATCTCTAGAGGAGAAA-GAAGCA-TCCAGGTGAGATCAAACTAAGAGCTGGACATCTTGTTGACCGAA---CACAG-GTAGCTGACA-CTTTCCAATGCCAGGAAGGCCAGAGGCGCAGAGTGCTCTCCGGAG
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       93623 159 +    111706 GTTGTGT-TTGGTGAC----CCTTTCAGGACCACAGTTTTCCATCTCTAGAGGAGAAA-GAAGCA-TCCAGGTGAAACCAAACTAAGAGTTGGGCATCTTGCTGACCGAA---CACAG-GTAGCTGACCACTTTCCAATGCCAGGAAGGCCAGAGGCC-----TTCTCTCTGGAG
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                124662 159 + 192460366 GTTGTGT-TTGGTGAC----CCTTTCAGGACCACAGTTTTCCATCTCTAGAGGAGAAA-GAAGCA-TCCAGGTGAGACCAAACTAAGAGTTGGGCATCTTGCTGACCGAA---CACAG-GTAGCTAACCACTTTCCAATGCCAGGAAGGCCAGAGGCC-----TTCTCTCTGGAG
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                121987 159 - 187378091 GTTGTGT-TTGGTGAT----GCTTTCAGGACCACAGTTTTCCATCTCTAGAGGAGAAA-GAAGCA-TCCAGGTGAGACCAAACTAAGAGTTGGGCATCTTGCTGACCGAA---CACAG-GTAGCTGACCACTTTCCAATGCCAGGAAGGCCAGAGGCC-----TTCTCTCTGGAG
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               474120 159 -  91754291 GTTGTGT-TTGGTGAC----CCTTTCAGGACCACAGTTTTCCATCTCTAGAGGAGAAA-GAAGCA-TCCAGGTGAGATCAAACTAAGAGTTGGGCATCTTGCTGACCGAA---CACAG-GTAGCTGACCACTTTCCAATGCCAGGAAGGCCAGAGGCC-----TTCTCTCTGGAG
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               985741 163 -  74750902 GTTTTGT-TTGGTGAC----GCTTTCA-AACGACACTTTTCCATCTATAGGGGAGAAA-GGAGCATTCCAGGTGAGACCAAACTGGGAGCTGGGCATTGTATTGACCAAA---CACAG-GCAGCTGAGCACTTTCCAGTGCCAGGAAGGCCAGAGGCGCAGAGCGACCTCCGGA-
i calJac3.chr17            C 0 C 0
s mm10.chr16                65473530 122 -  98207768 GTGTTGTCTTAATGAC----ACTCTCTAGAGCACACCTTCTCATCCACAAAAGCCAAA---ACCC-TTCAGGTTACACTGAAGTAACAGCTGG------TGTTAACCTCA---TACAGAGTTTCAGAGCATTC----------------CCAGAG--------------------
i mm10.chr16               C 0 C 0
s canFam3.chr33             29113626 168 +  31377067 GTTTTGT-TTGGTGAC----ACTCTCTGGACTGCAG-TGTCCATCTACAGAGTAGAAAAAAAGCATTACAGGTCAGACCAAAGTAAGAGTTGGACATATTGTTGACCTGACCCCGCAG-ATAACCTCCCACTATCCAATGCAAGGAAGACCAGAGGCACAAAATGTTCTTCGGAG
i canFam3.chr33            I 48 C 0
e ponAbe2.chr3             199829116 6447 + 202140232 M

a score=82265.000000
s hg38.chr3_KI270935v1_alt    183904 34 +    197351 GCTGCTGTGACGGCCGAGACTCCAGGAGGGCGTT
s panTro4.chr3             199822405 34 + 202329955 GCTGCTGTGACGGCCGAGACTCCAGGAGGGCGTT
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199835654 34 + 202140232 GCTGCTGTGACGGTCAGAACTGCAGGAgggcgtt
i ponAbe2.chr3             M 6447 I 1
s nomLeu3.chr11            120944562 34 + 123690457 GCTGCTGTGATGGCCCAGACTCCAGGAAGGCGTT
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       93782 34 +    111706 GCTGCTGTGATGGCCAGGACTCCAGGAGGGTGTT
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                124821 34 + 192460366 GCTGCTGTGATGGCCAGGACTCCAGGAGGGTGTT
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                122146 34 - 187378091 GCTGTTGTGATGGCCAGGACTCCAGGAGGGTGTT
i papAnu2.chr2             C 0 I 324
s chlSab2.chr15               474279 34 -  91754291 GCTGCTGTGATGGCTAGAACTCCAGGAAGGTGTT
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               985904 17 -  74750902 -----------------GACTCCAAGAGGGCGTT
i calJac3.chr17            C 0 C 0
s mm10.chr16                65473652 12 -  98207768 --------GCTGACcaggac--------------
i mm10.chr16               C 0 C 0
s canFam3.chr33             29113794 33 +  31377067 GCCACTGCAGAGGCTGAGATTCC-GCTGggcatt
i canFam3.chr33            C 0 C 0

a score=310482.000000
s hg38.chr3_KI270935v1_alt    183938  99 +    197351 Ac---aaacct--gggcttg-atcc-cagctctgccaccgcgtc--ac----cacaaagtcacagcctcttcgagct--gttttcctcgttcacctgtaaaatggggata---acac
s panTro4.chr3             199822439  99 + 202329955 Ac---aaaccc--gggcttg-atcc-cagctctgccaccgcgtc--gc----cacaaagtcacagcctcttcgagct--gctttcctcgttcacctgtaaaatggggata---acac
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199835689 101 + 202140232 ac---aaacccaagggcttg-attc-cagctctgccaccgcatc--gc----cacaaagtcacagcctcttcgagct--gttttcctcgttcatctgtaaaatggggata---acac
i ponAbe2.chr3             I 1 C 0
s nomLeu3.chr11            120944596 103 + 123690457 Ac---aaaccc--gggctta-atcc-cagctctgccactgtgtc--gcccgacacaaagtcacggcctcttcgagct--gttttccttgttcatctgtaaaatggggata---acac
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       93816 102 +    111706 Ac---aaaccc--gggctcg-atcc-cagctctgccactgagtc--gt----cacaaattcacagccccttcgagct--gttttcctcgttcatctgtaaaatggggataatgacac
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                124855 102 + 192460366 Ac---aaaccc--gggctcg-atcc-cagctctgccactgagtc--gt----cacaaagtcacagccccttcgagct--gttttcctcgttcatctgtaaaatggggataatgacac
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                122504 102 - 187378091 ac---aaaccc--aggctcg-atcc-cagctctgccaccaagTC--GT----CACAAAGTCACAGCCCCTTCGAGCT--GTTTTCCtcgttcatctgtaaaatggggataatgacac
i papAnu2.chr2             I 324 C 0
s chlSab2.chr15               474313 102 -  91754291 Ac---aaaccc--gggctcg-atcc-cagctctgccaccgagtt--gt----cacaaagtcacagccccttcgagct--gtcttcctcgttcatctgtaaaatggggataatgacac
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               985921 107 -  74750902 ACa--aaacct--gggctcg-atcc-cagctctgccactgagtcaagt----cacaaagtcacagcctcttcgagctgagttttccttgttcatctgtgaaatggggataatagtgc
i calJac3.chr17            C 0 C 0
s mm10.chr16                65473664  92 -  98207768 -------acct--ggacttt-agctgtagctttgttacccaag---gt--------aagtcccagtatctttaagcc--ttgtttttc--tcatctgaaaaatgggagtaataccac
i mm10.chr16               C 0 C 0
s canFam3.chr33             29113827  94 +  31377067 --aggacacct--gggcttgaatcc-cagttctgctccc-------ca----aactaagtcacagcctttttgaacc--ttattttcc--tcatctatgaaacagggata---atac
i canFam3.chr33            C 0 I 473

a score=202516.000000
s hg38.chr3_KI270935v1_alt    184037 59 +    197351 ctatctgaaaggttgtagggtgggagtgagcctgtagatgctgaggggctGCGGGAGTA
s panTro4.chr3             199822538 59 + 202329955 ctatctgaaaggttgtagggtgggagtgagcctgtagatgctgaggggctGCGGGAGTG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199835790 59 + 202140232 ctatctgaaaggttgtAGAGTGGGAGTGAGCCTGTAGATGCTGAGGGGCTGCGGGAGTG
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120944699 59 + 123690457 ctatctgaaaggttgtAGGGTGGGGGTGAGCCTGTAGATGCTGAGGGGCTGCGGGAGTG
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       93918 59 +    111706 ctatctgaaaggttgtAGGGTGGGAGTGAGCCTGTAGATGCTGAGGGGCTGTGGGAGTG
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                124957 59 + 192460366 ctatctgaaaggttgtAGGGTGGGAGTGAGCCTGTAGATGCTGAGGGGCTGTGGGAGTG
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                122606 59 - 187378091 CTATCTGAAAGGTTGTAGGGTGGGAGTGAGCCTGTAGATGCTGAGGGGCTGTGGGAGTG
i papAnu2.chr2             C 0 I 306
s chlSab2.chr15               474415 59 -  91754291 ctatctgaaaggttgtagggtgggagtgagcctgtagatgctgaggggctgtggaaGTG
i chlSab2.chr15            C 0 I 200
s calJac3.chr17               986028 59 -  74750902 ctacctgaaaggttgtagggagggaatgagtctacaggtgctgaggtgctttgGGAGTG
i calJac3.chr17            C 0 C 0
s mm10.chr16                65473756 59 -  98207768 ttaccagaaaagctataagactgaaatgagcttatagatgagagggtgccttacaaaTG
i mm10.chr16               C 0 C 0
e canFam3.chr33             29113921 473 +  31377067 I

a score=2997.000000
s hg38.chr3_KI270935v1_alt    184096 1 +    197351 T
s panTro4.chr3             199822597 1 + 202329955 T
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199835849 1 + 202140232 T
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120944758 1 + 123690457 T
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       93977 1 +    111706 T
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                125016 1 + 192460366 T
i macFas5.chr2             C 0 I 154
s papAnu2.chr2                122971 1 - 187378091 T
i papAnu2.chr2             I 306 C 0
s chlSab2.chr15               474674 1 -  91754291 T
i chlSab2.chr15            I 200 C 0
s calJac3.chr17               986087 1 -  74750902 C
i calJac3.chr17            C 0 C 0
s mm10.chr16                65473815 1 -  98207768 T
i mm10.chr16               C 0 C 0
e canFam3.chr33             29113921 473 +  31377067 I

a score=61696.000000
s hg38.chr3_KI270935v1_alt    184097 31 +    197351 TAGGACACCTGTTGTGAGGACACCTGTTGTT
s panTro4.chr3             199822598 30 + 202329955 TAGGACACCTGTTGTGAGGACACTTGTTGT-
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199835850 30 + 202140232 TAGGACACCTGTTGTGAGGACACCTGTTGT-
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120944759 30 + 123690457 GAGG-CACCTGTTGTGAGGACACCTGTTGTG
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       93978 31 +    111706 TAGGATGCCTGTTGTTAGGACGCCTGTTATT
i rheMac3.chrUn_JH291127   C 0 I 171
s macFas5.chr2                125171 31 + 192460366 TAGGACGCCTGTTGTTAGGACACCTGTTGTT
i macFas5.chr2             I 154 I 78
s papAnu2.chr2                122972 31 - 187378091 TAGGACGCCTGTTGTTAGGACGCCTGTTGTT
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               474675 31 -  91754291 TAGGACACCTGTTGTTAGGACGCCTGTTGTT
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               986088 12 -  74750902 TAGGACACCTGT-------------------
i calJac3.chr17            C 0 C 0
s mm10.chr16                65473816 24 -  98207768 TAGGATACCAGCAG--AGGGCATCTG-----
i mm10.chr16               C 0 C 0
e canFam3.chr33             29113921 473 +  31377067 I

a score=40848.000000
s hg38.chr3_KI270935v1_alt    184128 31 +    197351 ACGACACCTGTTGTGAGGACACCTGTTGTGG
s panTro4.chr3             199822628 16 + 202329955 --------------GAGGACACCTGTTGTG-
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199835880 16 + 202140232 --------------GAGGACACCTGTTGTG-
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120944789 30 + 123690457 AGGACAGCTGCTGTGAGGACACCTGTTGTG-
i nomLeu3.chr11            C 0 I 450
s rheMac3.chrUn_JH291127       94180 29 +    111706 -GGATGCCTGTTGTTAGGACACCTGTTGTT-
i rheMac3.chrUn_JH291127   I 171 C 0
s macFas5.chr2                125280 30 + 192460366 AGGACGCCTGTTGTTAGGACGCCTGTTGTT-
i macFas5.chr2             I 78 C 0
s papAnu2.chr2                123003 30 - 187378091 AGGACGCCTGTTGTTAGGACACCTGTTGTT-
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               474706 30 -  91754291 AGGACGCCTGTTGTTAGGACGCCTGTTGTT-
i chlSab2.chr15            C 0 C 0
e mm10.chr16                65473840  0 -  98207768 C
e canFam3.chr33             29113921 473 +  31377067 I
e calJac3.chr17               986100  0 -  74750902 C

a score=107410.000000
s hg38.chr3_KI270935v1_alt    184159 41 +    197351 AGGACACCTGTGGAGGAACGTGGCTCCTCCTTCCA-------------TCCGGG
s panTro4.chr3             199822644 41 + 202329955 AGGACACCTGTGGAGGAACGTGGCTCCTCCTTCCA-------------TCCGGG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199835896 41 + 202140232 AGGACACCTGTGGAGGAACGTGGCTCCTCCTTCCA-------------TCCGGG
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120945269 41 + 123690457 AGGACACCTGTGAAGAAATGTGGCTCCTCCTTCCA-------------TCCAGC
i nomLeu3.chr11            I 450 C 0
s rheMac3.chrUn_JH291127       94209 41 +    111706 AGGACACCTGTGGAGGAACGTGGCTCCTCCTTCCA-------------TCCAGG
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                125310 41 + 192460366 AGGACACCTGTGGAGGAACGTGGCTCCTCCTTCCA-------------TCCAGG
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                123033 41 - 187378091 AGGACACCTGTGGAGGAACATGGCTCCTCCTTCCA-------------TCCAGG
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               474736 41 -  91754291 AGGACACCTGTGGAGGAACGTGGCTCCTCCTTCCA-------------TCTAGC
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               986100 43 -  74750902 -----------GGAGGAATGTGGTTCCTCCTTCCGCCCCCGTCCCGCCCCCCGG
i calJac3.chr17            C 0 C 0
s mm10.chr16                65473840 19 -  98207768 -----GCTTGTGG-----------------CTTCA-------------TCCTGG
i mm10.chr16               C 0 C 0
e canFam3.chr33             29113921 473 +  31377067 I

a score=339903.000000
s hg38.chr3_KI270935v1_alt    184200 103 +    197351 CATCATCCCT-----------------------------------GGAGGGAGACACAAACGAGGGCCAGCCAGGATAC-AGGAGGAGTCCGGAAGTGAATTTCCAGGCCC------------AGGTCTTTCCTGCGTCCCCTTTGAGTCT
s panTro4.chr3             199822685 102 + 202329955 CATCATCCCT-----------------------------------GGAGGGAGACACAAACGAGG-CCAGCCAGGATAC-AGGAGGAGTCCGGAAGTGAATTTCCAGGCCC------------AGGTCTTTCCTGCGTCCCCTTTGAGTCT
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199835937 137 + 202140232 CATCATCCCTGGAGGGAGACACACAAGGCCAGGAGCCAGGATGCAGGAGGGAGACACACACGGGG-CAAGCCAGGATAC-AGGAGGAGTCCGGAAGTGAATTTCCAGGCCC------------AGGTCTTTCGTGCATCCCCTTTGACTCT
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120945310 102 + 123690457 CATCATTCCT-----------------------------------GGAGGGACACAAAAACGAGG-CAAGCCAGGATGC-AGGAGGAGTCTGGAAGTGAATTTCCAGGCCC------------AGGTCTTTCCTGTGTCCCCTTTGACTCT
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       94250 102 +    111706 CATCATCCCT-----------------------------------GGAGGGAGACACAAATGAGG-AAAGCCAGCATAC-AGGAGGAGTCTGGAAGTGAATTTCCAGGCCC------------AGGTCTTTCCTGCATCCCCTTTGAGTTT
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                125351 102 + 192460366 CATCATCCCT-----------------------------------GGAGGGAGACACAAATGAGG-AAAGCCAGCATAC-AGGAGGAGTCTGGAAGTGAATTTCCAGGCCC------------AGGTCTTTCCTGCATCCCCTTTGAGTTT
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                123074 102 - 187378091 CGTCATCCCT-----------------------------------GGAGGGAGACACAAATGAGG-AAAGCCAGGATAC-AGGAGGAGTCTGGAAGTGAATTTCCAGGCCC------------AGGTCTTTCCTGCATCCCCTTTGAGTTT
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               474777 102 -  91754291 CATCATCCCT-----------------------------------GGAGAGAGACACAAATGAGG-AAAGCCAGGATAC-AGGAAGAGTCTGGAAGTGAATTTCCAGGCCC------------AAGTCTTTCCTGCATCCCCTTTGAGTTT
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               986143 102 -  74750902 CATCGTCCCT-----------------------------------GAAGGGAGACACCAACGAAG-CAAGCCAGGGAAG-AGGAGGCGTCGGGAAGTGAATTTCCAGGCCC------------AGGTCTTTCCTGCATCCCCTCTGAGTTT
i calJac3.chr17            C 0 C 0
s mm10.chr16                65473859 107 -  98207768 CATCATCACT-----------------------------------GAAGAGAGA----AATGAAG-TCAGCAAGCAGA--AGAAAGAGTCT-GAAGCAGAGACCCAAGCTTGTCTGCCCATAAAGGTCTCTCCTG-ACTCCATTTAGGCTT
i mm10.chr16               C 0 C 0
s canFam3.chr33             29114394 115 +  31377067 CATCATCCCT-----------------------------------AAAGTTAGAAACACATGACA-GCAGCCAAGGGACAAGGAGCAGTCTGGAAAAGAATTTCCAGGCCCTTCTGTGTGCTGGGGTCTTTGCTGCATCCCCATAGGGTTT
i canFam3.chr33            I 473 I 290

a score=90945.000000
s hg38.chr3_KI270935v1_alt    184303 33 +    197351 TATAGGATCCTGATTAGGAGCGTG---AGATCCTG------G
s panTro4.chr3             199822787 33 + 202329955 TACAGGATCCTGATTAGGAGCGTG---AGATCCTG------G
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199836074 33 + 202140232 TACAGGATCCTGATTAGAAGCACG---AGATCCTG------G
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120945412 33 + 123690457 TACAGGATCCTGATCAGGAGCGTG---AGCTCCTG------G
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       94352 33 +    111706 TACAGGATTCTGATTAGGAACGTG---AGATCCTG------G
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                125453 33 + 192460366 TACAGGATTCTGATTAGGAACGTG---AGATCCTG------G
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                123176 33 - 187378091 TATAGGATTCTGATTAGGAACGTG---AGATCCTG------G
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               474879 33 -  91754291 TACAGGATTCTGATTAGGAACGTG---AGATCCTG------G
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               986245 35 -  74750902 T-CAGGATCCCGATTAGGAGCATGTCATGGTCCTG------G
i calJac3.chr17            C 0 C 0
s mm10.chr16                65473966 39 -  98207768 TTCAGTACTGGGACTAGGAACCAG---AAACCTTGTGAGAAG
i mm10.chr16               C 0 C 0
e canFam3.chr33             29114509 290 +  31377067 I

a score=756802.000000
s hg38.chr3_KI270935v1_alt    184336 224 +    197351 AGAACTGGGCGTGCGCACTCCT-GTTCACCTCTTCCCTGCCCACGCCCGTTTCCCTTCT-------GCTTT----CCAGCTCCC-CTCAATATGCCCATTTTCCAGAGTTAGGAT-GTGTCTGGGTCTCTGTGATAAATGGCTCTGTCTTCATCTGGGTTGGGTCACGGGACACCCATTT--GTCCTTCCTTCTCTCCTCCCAAGGCATCCGATGGGGACAGAATGGGGTGAATGAGAGG
s panTro4.chr3             199822820 224 + 202329955 AGAACTGGGCGTGCGCACTCCT-GTTCACCTCTTCCCTGCCCCCGCCCGTTTCCCTTCT-------GCTTT----CCAGCTCCC-CTCAATATGCCCATTTTCCAGAGTTAGGAT-GCATCTGGGTCTCTGTGATAAATGGCTCTGTCTTCATCTGGGTTGGGTCACGGGACACCCATTT--GTCCTTCCTTCTCTCCTCCCAAGGCATCCGATGGGGACAGAATGGGGTGAATGAGAGG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199836107 222 + 202140232 AGAACTGGGCGTGCGCGCTCCT-GTTCACCTCTTCCCTGCCCACGCCCGTTTCCCTTCT-------GCTTT----CCAGCTCCC-CTCAACATGCCTATCTTC--GAGTTAGGAT-GCGTCTGGGTCTCTGTGATAAATGGCTCTGTCTTCATCTGGGTTGGGTCACGGGACACCCATTT--GTCCTTCCTTCTCCCCTCCCAAGGCATCTGATGGGGATAGAATGGGGTGAATGAGAGG
i ponAbe2.chr3             C 0 I 442
s nomLeu3.chr11            120945445 224 + 123690457 AGAACTGGGCGTGCGCGCTCCT-GTTCGCCTCTTCCCTGCCTATGCCCGTTTCCCTTCT-------GCTTT----CCAGCTCCC-CTCAACATGCCCATTTTCCAGAGTTAGGAT-GCGTCTGGGTCTCTGTGATAAATGGCTCTGTCTTCATCTGGGTTGGGTCACGGGACACCCATTT--GTCCTTCCTTCTCCCCTCCCAAGGCCTCTGATGGGGACAGAATGGGGTGAATGAGAGG
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       94385 224 +    111706 AGAACTGGGCATGCGCACTCCT-GTTTACCTCTTCCCTACCCACGCCCGTTTCCCTTCT-------GCTTT----CCAGCTCCC-CTCAACGTGCCCATTTTCCAGAGTTAGGAT-GCGTCTAGGTCTCTGTGATAAATGACTGTCTCTTCATCTGGGTTGGATCATGGGACACCCATTT--GTCCTTCCTTCCCCCCTCCCAAGGCATCTGATGGGGACAGAATGGGGTGAATGAGAGG
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                125486 224 + 192460366 AGAACTGGGCATGCGCACTCCT-GTTCACCTCTTCCCTACCCACGCCCGTTTCCCTTCT-------GCTTT----CCAGCTCCC-CTCAACGTGCCCATTTTCCAGAGTTAGGAT-GCGTCTAGGTCTCTGTGATAAATGACTGTCTCTTCATCTGGGTTGGATCATGGGACACCCATTT--GTCCTTCCTTCCCCCCTCCCAAGGCATCTGATGGGGACAGAATGGGGTGAATGAGAGG
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                123209 224 - 187378091 AGAGCTGGGCATGCGCACTCCT-GTTCACCTCTTCCCTACCCACGCCTGTTTCCCTTCT-------GCTTT----CCAGCTCCC-CTCAACGTGCCCATTTTCCAGAGTTAGGAT-GCGTCTAGGTCTCTGTGATAAATGACTGTCTCTTCATCTGGGTTGGATCATGGGACACCCATtt--gtccttccttctcccctcccaagGCATCTGATGGGGACAGAATGGGGTGAATGAGAGG
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               474912 217 -  91754291 AGAACTGGGCATGCGCACTCCT-GTTCACCTCTTCCCTACCCATGCCCGTTTCCCTTCT-------GCTTT----CCAGCTCCC-CTCAACGTGCCCATTTTCCA-------GAT-ACGTCTAGGTCTCTGTGATAAATGACTGTCTCTTCATCTGGGTTGGATCATGGGACACCCATTT--GTCCTTCCTTCTCCCCTCCCAAGGCATCTGATGGGGACAGAATGGGGTGAATGGAAGG
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               986280 222 -  74750902 AGATCTGGGCGTGTGCACTCCT-GTTCACCTCTTCCCTGCCCACACCCGTTTCCCTTCT-------GCTTT----CCAGCTCCC-CTCACCTTGCCCATTTTCCAGAGTGAGGAT-GCGTCTCGGTCTCTTTGATAAATGATTCCTCCTTCCTCTGGGTTGGCTCACAGGACACCCATTT--GTCCTTCCTTCTCCCTTCCCAAGGCATCTGATGGGGACAGAGTGGGGTGAATGGGG--
i calJac3.chr17            C 0 C 0
s mm10.chr16                65474005 192 -  98207768 AGCTCTGTG-ATATTCCCCCAT-CTTCTCCCTGTCTCT-CTCAGGTCTCTTTGACTTTC-------CCTTTGAGGCCAGCTCCA---TGGCTTGTTCATTTTCCAGTGTT--------------GTGTCTGTAGT-AATGCCTCTCTCTCTGCCCAGG-TGAATCTTGAGG-----ATTTTGTTCTTTCCTTCTGCCCTCCCAATGCATCCTACAGG--TCGGTTAGG------------
i mm10.chr16               C 0 C 0
s canFam3.chr33             29114799 217 +  31377067 AGACATCGGTGTGTGCACACCTCATTCATCTTTTCTCTGCCTGCCTCCACTTCCCCTCTCGGTTGCCCTTTCTGCCTGGCTCCTTCTCAACTGGCTCCTTTTCCAGAGCTGGGATGGCTCCTGTGTCTCTGCAACAAATGCCTCTGTCTTTGTCTG---------------------TTT--GTCCTTCCTTCTCCCCTCCCAAGGCATCCGATGGGGACACAGAGGGGAGAGTAAGAGA
i canFam3.chr33            I 290 C 0

a score=302740.000000
s hg38.chr3_KI270935v1_alt    184560 92 +    197351 GGACAAAATGAGTGGCTTCTCT----AGTTCCTTGTGGCCGAAAAACCTCCTAGGCCCGCATACTGCTGGGTCTGCATAGGG---GCAGGAGTCTGAAG
s panTro4.chr3             199823044 92 + 202329955 GGACAAAATGAGTGGCTTCTCT----AGTTCCTTGTGGCCGAAAAACCTCCTAGGCCCGCATACTGCTGGGTTTGCATAGGG---GCAGGAGTCTGAAG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199836771 92 + 202140232 GGACAAAATGAGTGGCTTCTCT----AGTTCCTTGGGGCCGAAAAACCTCCTAGGCCCGCATACTGCTGGGTTTGCATAGGG---GCAGGAGTCTGGAG
i ponAbe2.chr3             I 442 C 0
s nomLeu3.chr11            120945669 91 + 123690457 GGACAAAATGAGTGGCTTCTCT----AGTTCCTTGTGGCCGAAAAACCTCCTAGG-CCACGTACTGCTGGGTGTGCATAGGG---GCAGGAGTGTGAAG
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       94609 92 +    111706 GGACAAAATGAGTGGCTTCTCT----AGTTCCTTGTGGCCGAAAAATCTCCTAGGCCTGCATGCTGCTGGGTTTGCACAGGG---GCAGGAGTCTGAAG
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                125710 92 + 192460366 GGACAAAATGAGTGGCTTCTCT----AGTTCCTTGTGGCCGAAAAATCTCCTAGGCCTGCATGCTGCTGGGTTTGCACAGGG---GCAGGAGTCTGAAG
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                123433 92 - 187378091 GGACAAAATGAGtggcttctct----agttccttgtgGTCGAAAAACCTCCTAGGCCTGCATGCTGCTGGGTGTGCACAGGG---GCAGGAGTCTGAAG
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               475129 91 -  91754291 GGACAAAATGAGTGGCTTCTCT----AGTTTCTTGTGGCCGAAAAGTCTCCTAGGCCTGCATGCTGCTGGGTGTGCACA-GG---GCAGGAGTCTGAAG
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               986502 91 -  74750902 GGACAAAATGAATGGCTTCTCT----AGTTCCATGTGGCTGAAAAACCTCCCAGGCCCACATACTGCTGGCTTTGC-CGGGG---GCATAAATCTGAAG
i calJac3.chr17            C 0 C 0
s mm10.chr16                65474197 94 -  98207768 GGAAGAAACCACTGGCTTCTCCTAGATGTGCCCTGT-----CAAGACCTCCCATGGCTCTAGGCTGCTGAGTTTGCTTCAGGCATGAAGAACTCTGTAG
i mm10.chr16               C 0 I 1552
s canFam3.chr33             29115016 90 +  31377067 GGAGGCCATGAGTGGATTCTCTC---CGTCCTGTTTGGT--GGAGACCTCCTAGGCCTGCAGACCATGGTGCTTACTCA-CA---GCAGGAACCTGAAA
i canFam3.chr33            C 0 C 0

a score=957978.000000
s hg38.chr3_KI270935v1_alt    184652 303 +    197351 TCAGGTGTAAGTTAATATTCCACGGGAG-GCAGGAAGAGCTTAGTGTGGATGTGGGGTGTAAGTAAATTGGAGCAAGGAT--AAGATCATGAGATTCTCCCAGACTTGGCTTGAAGAGAC---AGCTGGGTTTGAGGCAGCAAAGCCAGGATCTCCAAGAGAGATTCCCCTTCTAAGCTACCCA-AGTAGGAGTCCCTA----GTTTTTT--------GGGTCCCCTAAAATTGCTTACCTTTATATCATTTATGCC-----------TCGTGCTGTGAATAAAGTTCAATCTTGTCAGACTTAGGACAACTAGGCTGATCTCGAGCAGGAAG
s panTro4.chr3             199823136 303 + 202329955 TCAGGTGTAAGTTAATATTCCACGGCAG-GCAGGAAGAGCTTAGTGTGGATGTGGGGTGTAAGTAAATTGGAGCAAGGAT--AAGATCATGAGATTCTCCCAGACTTGGCTTGAAGAGAC---AGCTGGGTTTGAGGCAGCAAAGCCAGGATCTTCAAGAGAGATTCCCCTTCTAAGCTACCCA-AGTAGGAGTCCCTA----GTTTTTT--------GGGTCCCCTAAAATTGCTTACCTTTATACCATTTATGCC-----------TCGTGCTGTGAATAAAGTTCAATCTTGTCAGACTTAGGACAACTAGGCTGAGCTCGAGCAGGAAG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199836863 300 + 202140232 TCAGTTGTAAGTTAATATTCCGTGGGAG-GCAGGAAGAGCTTAGTGTGGGTGTGGGGTGTAAGTAAACTGGAGCAACGGTAAAAGATCATGAGATTCTCCCAGACTTGGCTTGAATAGAC---AGCTGGATTTGAGGCAGCAAAGCCAGGATCTCCAAGACAGATTCCCCTTCTAAGCTACCCA-AGTAGGAGTCCCTC----GTTTTTT--------GGGTCCCCTAAAATTGCTTACCTTTATATCATTTATGCC-----------TCGTGCTGTGAATAAAGTTCA-----GTCAGACTTAGGACAATTAGGCTGACCTCGGGCAGGAAG
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120945760 303 + 123690457 TCAGGTGTAAGTTAATGTTCCATGGGAG-GCAGGAAGAGCTTAGTGTGGATGTGGGGTGTGAGTAAATTGGAGCAAGGAT--AAGATCGTGAGATTTTCCCAGACGTGGCTTGAATAGAC---AGCTGGGTTTGAGGCAGCAAAGCCAGGATCTCCAAGGGAGATTCCCCTTCTAAGCTACCCA-AGTAGGAGTCCATA----GTTTTTT--------GCATCCCCTAAAATTGCTTACCTTTATATCATTTATGCC-----------TCGTGCTGTGAATAAAGTTCAATCTTGTCAGACTTAGGACAACTAGGCTGAGCTCGAGCAGGAAG
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       94701 303 +    111706 TCAGGTGTAAGTTAATATTCCCTGGGGG-GCAGGAAGAGCTTAGTGTGGATGTGAGGTGTGAGTAAATTGGAGCGAGGAT--AAGATCATGAGATTCTCCCAGACTGGCCTTGAATAGAC---AGCTGGGTTTGAGGCAGCAAAGTCAAGATCTCCAAGAGAGATTCCCCTTCTAAGCTCCCTA-AGTAGGAGTCCCTA----GTTTTTT--------GGGTCCCCTAAAATTGCTTGCCTTTATATCATGTATGCC-----------TCGTGCTGTGAATAAAGTTCAATCTTGCCAAACTTAGGACAACCAGGCTGAGCTGGAGCAGGAAG
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                125802 303 + 192460366 TCAGGTGTAAGTTAATATTCCCTGGGGG-GCAGGAAGAGCTTAGTGTGGATGTGAGGTGTGAGTAAATTGGAGCGAGGAT--AAGATCATGAGATTCTCCCAGACTGGCCTTGAATAGAC---AGCTGGGTTTGAGGCAGCAAAGTCAAGATCTCCAAGAGAGATTCCCCTTCTAAGCTCCCTA-AGTAGGAGTCCCTA----GTTTTTT--------GGGTCCCCTAAAATTGCTTGCCTTTATATCATGTATGCC-----------TCGTGCTGTGAATAAAGTTCAATCTTGCCAAACTTAGGACAACCAGGCTGAGCTGGAGCAGGAAG
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                123525 302 - 187378091 TCAGGGGTAAGTTAATATTTCCTGGGGG-GCAGGAAGAGCTTAGTGTGGATGTGAGGTGTGAGCAAATTGGAGCAAGGAT--AAGATCATGAGATTctcccagactggccttgaataGAC---AGGTGGGTTTGAGGCAGCAAAGTCAAGATCTCCAAGACAGATTCCCCTTCTAAGCTCCCTA-AGTAGGAGTCCC-A----GTTTTTT--------GGGTCCCCTAAAATTGCTTGCCTTTATATCATTTATGCC-----------TCGTGCTGTGAATAAAGTTCAATATTGCCAAACTTAGGACAACCAGGCTGAGCTGGAGCAGGAAG
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               475220 303 -  91754291 TCAGGTGTAAGTTAATGTTCCCTGGGGG-GCAGGAAGAGCTTAGTGTGGATGTGAGGTGTGAGTAAATTGGAGCGAGGAT--AAGATCATGAGATTCTCCCAGACTGGCCTTGAATAGAC---AGCTGGGTTTGAGGCAGCAAAGTCAAGATCTCCAAGAGAGATTCCCCTTCTAAGCTCTCTA-AGTAGGAGTCCCTA----GTTTTTT--------GGGTCCCCTAAAATTGCTTGCCTTTATATCATTTATGCC-----------TTGTGCTGTGAATAAAGTTCAATCTTGCCAAACTTAGGACAACCAGGCTGAGCTGGAGCAGGAAG
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               986593 302 -  74750902 TGAGGTGTAAGTT-ATATTCCATGGGAG-GCAGAAAGAGCTTGGTGTGGATGTGGGGTGTGAGTGAACTGGAGCAAGGAT--AAGATCATGAGCTCTTCGAGGACTGGGCTTGAATAGAC---CACTGGATTTGGGGCAGCAAAGTCAGGATCTCCAAGAGAGGTTCCCTTTCTAAGCTACCCA-AGTAGGAGTCCCTA----GCTTTTT--------GGGTCCCCTAAAATTGGTTACCTCCATATCATTTATGCC-----------TCGTGCTGTGAATAAAGCTAACTCTGGTCAGACTTAGAACAACTAGGCTGAGAGAGGGCAGGAAG
i calJac3.chr17            C 0 C 0
s canFam3.chr33             29115106 327 +  31377067 CCAACTTTACACTGATGCTTCATGGGGACATCTAGAAAGCTCCGTCTGGATTTGCGGTATAAGTAAATTGGACCAAGGAT--AAGATTATGACCTTCTC--AGAGTTGGC-TGAACAGACTCAGCCTGGGTTCAGGGCACTGGAGTCAAGATCCCAAAAGGAGATTTCTCTTCTAAGCTAACCAGAGTGGGAGGGCCTAGGAGGGTTTTTGGGGGGAGGGGGTTGCCAAAATTGCTGACATCCTTATAATATATGCCCTGATAGACAGTCAGGCTGCTAATTACGTTCCTTCTCACCAGACCTACAGTACCTAGA-TGAGATGGGGCAGGAgg
i canFam3.chr33            C 0 I 192
e mm10.chr16                65474291 1552 -  98207768 I

a score=211880.000000
s hg38.chr3_KI270935v1_alt    184955 78 +    197351 CTGGATGTTTATTAAGTCTGATTTACCTACTCAGTCTGGACTAAAAAGGTGTGTGGATTCCCTAGTCAGTGACCCAGC
s panTro4.chr3             199823439 78 + 202329955 CTGGATGTTTATTAAGTCTGATTTACCTACTCAGTCTGGACTAAAAAGGTGTGTGGATTTCCTAGTCAGTGACCCAGC
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199837163 78 + 202140232 CTGGATGTTTATTAAGTTTGATTTGCCTACTCAGTCTGGACTAAAAAGGTGTGTGGATTCTCTAGTCAGTGACCCAGC
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120946063 78 + 123690457 CTGGATGTTTATTAAGTCTGATTTACCTACTCAGTCTGGACTAAAAGGGTGTGCGGATTCTCTAGTCAGCGACCCAGC
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       95004 75 +    111706 CTGGATAT---TTAAGTCTGATGTGCCTACTCAGTCTGGACTAAAAAGGCGTGTGGATTCTCTAGTCCGTGACCCAGC
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                126105 75 + 192460366 CTGGATAT---TTAAGTCTGATGTGCCTCCTCAGTCTGGACTAAAAAGGCGTGTGGATTCTCTAGTCCGTGACCCAGC
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                123827 75 - 187378091 CTGGATGT---TTAAGTCTGATGTGCCTACTCAGTCTGGACTAAAAAGGCGTGTGGATTCTCTAGGCAGTGACCCAGC
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               475523 75 -  91754291 CTGGATGT---TTAAGTCTGATGTGCCTACTCAGTCTGGACTAAAAAGGCGTGTGGATTCTCTAGTCCGTGACCCAGT
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               986895 77 -  74750902 CTGGATGCTTATGAAGTCTGATTTACCTACTAAGTCTGGGCTGAAAAGGC-TGTGGGTTCTCTAGTCGGTGACCCAGC
i calJac3.chr17            C 0 C 0
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29115433 192 +  31377067 I

a score=313216.000000
s hg38.chr3_KI270935v1_alt    185033 105 +    197351 ATGAAGCCGGTCA-CTAGAGTGCCAGGCCCTGAGCCTGTCCCCATGGCCCTGTGAAGTACAAAGCGCTGCCCTAC------CTCTCAAGTGAGCACGCTGAGGCTCCAGGAG
s panTro4.chr3             199823517 105 + 202329955 ATGAAGCCGGTCA-CTAGAGTGCCAGGCCCTGAGCCTGTCCCCATGGCCCCGTGAAGTACAAAGCGCTGCCCTAC------CTCTCACGTGAGCATGCTGAGGCTGCAGGAG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199837241 105 + 202140232 ATGAAGCCGGTCA-CTAGAGTGCCAGGCCCTGAGCCTGTCCCCATGGCCCCGTGAAGTACAAAGCGCTGCCCCAC------CTCTCATGTGAGCACACTGAGGCTCCAGGAG
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120946141 104 + 123690457 ATGAAACCGGTCA-CTAGAGTGCCAGG-CCTGAGCCTGTCCCCACGGCCCCGTGAAGTACAAAGCGCTGCCGCAC------CTCTCACGTGAGCACGCTGAGGTTCCAGGAG
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       95079 105 +    111706 GTGAAGCCGGTCA-CTAGAGTGCCAGGCCCTGAGCCTGTCCCCATGGTCCCATGAAGTGCAACGCGCTGCCCCAC------CTCTCGTGTGAGCACGCTGAGGCTCCAGGAG
i rheMac3.chrUn_JH291127   C 0 I 15
s macFas5.chr2                126180 105 + 192460366 GTGAAGCCGGTCA-CTAGAGTGCCAGGCCCTGAGCCTGTCCCCATGGTCCCATGAAGTGCAACGCGCTGCCCCAC------CTCTCGTGTGAGCATGCTGAGGCTCCAGGAG
i macFas5.chr2             C 0 I 7
s papAnu2.chr2                123902  98 - 187378091 GTGAAGCCGGTCA-CTAGAGTGCCAGGCCCTGAGCCTGTCCCCATGGTCCCATGAAGTGCAACGCGCTGCCCCAC------CTCTCAGA-------GCTGAGGCTCCAGGAG
i papAnu2.chr2             C 0 I 7
s chlSab2.chr15               475598 105 -  91754291 GTGAAGCCGGTCA-GTAGAGTGCCAGGCCCTGAGCCTGTCCCCATGGTCCCATGAAGTGCAACGCGCTGCCCCAC------CTCTCGTGTGAGCACGCTGAGGCTCCAGGAG
i chlSab2.chr15            C 0 I 15
s calJac3.chr17               986972 102 -  74750902 AAGAAGTTGGTCA-CTGGAGTGCCAGGCCCTGTGCATGTGCCA--GACCCCGTGAAGTCCAAAGCACTGCCC-AC------CTCACCTGTGAGCACGCTGAGGTTCCAGGAG
i calJac3.chr17            C 0 C 0
s canFam3.chr33             29115625 112 +  31377067 GTTAAGTCAGACATCGGGAGTGCCAGGTCCTGCGTGTGTCCCCATAACCCTGTGAGGTGCATGTGTCTCCCCCACCCCCGGCTCACGCGGGAGAGCATCCGGGTTCAGGGAG
i canFam3.chr33            I 192 I 12
e mm10.chr16                65474291 1552 -  98207768 I

a score=-12886.000000
s hg38.chr3_KI270935v1_alt    185138  3 +    197351 C------------TT-
s panTro4.chr3             199823622  3 + 202329955 C------------CT-
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199837346 15 + 202140232 ATGAGCACGTGCGCC-
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120946245 15 + 123690457 ACGGGCACGTGCGCC-
i nomLeu3.chr11            C 0 C 0
s macFas5.chr2                126292  3 + 192460366 -------CGT------
i macFas5.chr2             I 7 I 5
s papAnu2.chr2                124007  3 - 187378091 -------CGT------
i papAnu2.chr2             I 7 I 5
s calJac3.chr17               987074 15 -  74750902 ATGAACACGTGTGCC-
i calJac3.chr17            C 0 C 0
s canFam3.chr33             29115749  3 +  31377067 -------------CCC
i canFam3.chr33            I 12 C 0
e rheMac3.chrUn_JH291127       95184 15 +    111706 I
e mm10.chr16                65474291 1552 -  98207768 I
e chlSab2.chr15               475703 15 -  91754291 I

a score=256746.000000
s hg38.chr3_KI270935v1_alt    185141 89 +    197351 CATCATCCCCGAGTCACCGGCCAGGTCGGGCCATCTAGGGAAACTGGAGAGTGTTAACTCCGC-AGTTACAGCCTTCTGGGCCACACACT
s panTro4.chr3             199823625 89 + 202329955 CATCATCCCCGAGTCACCGGCCAGGTCGGGCCATCTAGGGAAACTGGAGAGTGCTAACTCCGC-AGTTACAGCCTTCTGGGCCACACACT
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199837361 88 + 202140232 CATCATCCCCGAGTCACGGGCCAGGTCGGGCCATCTAGGGAAACTGGAGAGTG-TAACTCTGC-AGTTACAGCCTTCTGGGCCACATACT
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120946260 89 + 123690457 CATCTTCCCCGAGTCACGGGCCAGGTCAGGCCATCTAGGGAAACTGGAGCGTGCTAACTCCGC-AGTTACAGCCTTCCGGGCCACACACT
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       95199 89 +    111706 CATTATCCCCGAGTCACGGGCCAGGTCAGGCCATCTGGTGAAACTGGAGAGTGCTAACTCCAC-AATCACAGCTTTCCGGACCACACACT
i rheMac3.chrUn_JH291127   I 15 I 2
s macFas5.chr2                126300 89 + 192460366 CATTATCCCCGAGTCACGGGCCAGGTCAGGCCATCTGGTGAAACTGGAGAGTGCTAACTCCAC-AATCACAGCTTTCCGGACCACACACT
i macFas5.chr2             I 5 I 2
s papAnu2.chr2                124015 89 - 187378091 CATCATCCCCGAGTCACAGGGCAGGTCGGGCCATCTGGTGAAACTGGAGAGTGCTAACTCCAC-AATCACAGCTTTCCGGACCACACACT
i papAnu2.chr2             I 5 M 1311
s chlSab2.chr15               475718 89 -  91754291 CATCATCCCCGAGTCACGGGCCAGGTCAGGCCATCTGGTAAAACTGGAGAGTGCTAACTCCAC-AATCACAGCTTTCCGGACCACACACt
i chlSab2.chr15            I 15 I 2
s calJac3.chr17               987089 88 -  74750902 CGTGGTCACTGAGTCACGGG-CAGGTCGGGTGATCTAGGGAAACTGGAGAATGCTAACTCCCT-GGTCACAGTTTTCTGggccacacaat
i calJac3.chr17            C 0 I 2
s canFam3.chr33             29115752 90 +  31377067 TGGCCTCGCGGAGTCACTGTCCAGGCTGGGCGATGAGGCGAATCGGGAGACCGTGAGCTCCCCTGATCACTCGGGCACAGGCCACGCAGG
i canFam3.chr33            C 0 I 1
e mm10.chr16                65474291 1552 -  98207768 I

a score=152017.000000
s hg38.chr3_KI270935v1_alt    185230  87 +    197351 GTCCcaaagctggaatttgagctctgttctgcctggctccaaagcAAAAGAAGGGCAATCACCTGGGCTGACCG--------------------------------------------------C-CCACGACATCCT
s panTro4.chr3             199823714  87 + 202329955 GTCCcaaagctggaatttgagctctgttctgcctggctccaaagcAAAAGAAGGGCAATCACCTGGGCTGAGCG--------------------------------------------------C-CCATGACATCCT
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199837449  87 + 202140232 GTCCcaaagctggaatttgagctctgttctgtctggctccaaagcAAAAGAAGGGCAATCACCTGGGCTGAGTG--------------------------------------------------C-CCACGACATCCT
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120946349  87 + 123690457 GTCCcgaagctggaatttgagctctgttctgcctggctccaaagcAAAAGAAGGGCAGTCACCTGGGCTGAGCG--------------------------------------------------C-CCACGACATCGT
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       95290 121 +    111706 GTCACAGAGCTGGAATTTGA---------------GCTCCAAAGCAAAAGAAGGACA-TCACCTGGGCTGAGCGCCCACGACATCCTCCGCTCCAGGCCATCTCCCGATCACCTGGGCTGAGCAC-CCACGACATCCT
i rheMac3.chrUn_JH291127   I 2 C 0
s macFas5.chr2                126391  71 + 192460366 GTCACAGAGCTGGAATTTGA---------------GCTCCAAAGCAAAAGAAGGACA-TCACCTGGGCTGAGCG--------------------------------------------------C-CCACGACATCCT
i macFas5.chr2             I 2 C 0
s chlSab2.chr15               475809  86 -  91754291 gtcacagagctggaatttgagttccattctgcctggttccaaagcAAAAGAAGGACA-TCACCTGGGCTGAGTG--------------------------------------------------C-CCACGACATCCT
i chlSab2.chr15            I 2 C 0
s calJac3.chr17               987179  87 -  74750902 gccacaaagctggcatttcagctctgttctgcctggccccaaagcAAAAGAAGGGCAATCACCTGGGCTGAGCA--------------------------------------------------C-GCACGACATCCT
i calJac3.chr17            I 2 I 20
s canFam3.chr33             29115843  76 +  31377067 GTCCCGGAGCTG------TAGGGCAGCCCAGGCGGCCTCCGGGCTCAGGAGGGGACG--GAACCGAGCCCAGTG--------------------------------------------------CTCCACGGAA----
i canFam3.chr33            I 1 C 0
e mm10.chr16                65474291 1552 -  98207768 I
e papAnu2.chr2                124104 1311 - 187378091 M

a score=274300.000000
s hg38.chr3_KI270935v1_alt    185317 149 +    197351 TCGCTCCGGGTCCTTTCCCGGTGGCAGGTGGAGACGGccttttggaggggcctcgctgtccagctgcaaggatagtggttagtggacagctcccagctgctggcccctgcagggtgggcctt-gcttttatgctgagctcatgctcttct
s panTro4.chr3             199823801 149 + 202329955 TCGCTCCGGGTCCTTTCCCACTGGCAGGTGGAGACAGccttttggaggggcctcgctgtccagctgcaaggatagtggttagtggacagcccccagctgctggcccctgcagggtgggcctt-gcttttatgctgagctcatgctcttct
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199837536 148 + 202140232 TTGCTCCGGGTCCTTTCATGGTGGCAGGTGGAGACGGCCTTTCAGAGGGGCCTCGCTGTccagctgcaaggatagtggttagtggacagcccccagctgc-ggccccttcagggtgggcctt-gcctttatgatgagctcatgctcttct
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120946436 148 + 123690457 T-ATTCCAGGTCCTTTCCCGGTGGCAGGCGGAGACGGcctttcggaggggcctcgctgtccagctgcaaggatagtggttagtggacagcccccagctgctggcccctgcagggtgggcctt-gcttttatgctgagctcatgctcttct
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       95411 150 +    111706 CCGCTCCGGGCCATTTCCCGGTGGCAGGTGGAGACGGcctttcagaggggcctcgctgtccagctgcaaggacagtggttagtggacattcctcagctgctggcccctgcagggtgggccttggcttttatgctgagctcatgctcttct
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                126462 150 + 192460366 CCGCTCTGGGCCATTTCCCGGTGGCAGGTGGAGACGGcctttcagaggggcctcgctgtccagctgcaaggacagtggttagtggacattcctcagctgctggcccctgcagggtgggccttggcttttatgctgagctcatgctcttct
i macFas5.chr2             C 0 C 0
s chlSab2.chr15               475895 150 -  91754291 CCACTCCAGGCCATTTCCCGGTGGCAGGTGGAGACGGcctttcagaggggcctcgctgtccagctgcaaggacagtggttagtggacatcccccagctgctggcccctgcagggtgggccttggcttttatgctgagctcatgctcttct
i chlSab2.chr15            C 0 C 0
s canFam3.chr33             29115919 111 +  31377067 -------------------GGGCGCCGGCAGGGAGGGC---------------tgctgcccagctgcacaggt-gtgatgagttgaca-ccttccgcttctagctccttcgcggtgcacctcagctctca---aaacctcgcgctcttcT
i canFam3.chr33            C 0 I 98
e mm10.chr16                65474291 1552 -  98207768 I
e calJac3.chr17               987266  20 -  74750902 I
e papAnu2.chr2                124104 1311 - 187378091 M

a score=310014.000000
s hg38.chr3_KI270935v1_alt    185466 179 +    197351 ccaggtgaccctgtggccgatgactaagcaaagtggcatcacagtgacctcaccatttccaccccacaagactccgccaacaggcagtctgcccctcagagcgccccatgggcaggagctttgtggctgtgtcagctgtgccacatcctcctgcccagcccggcctccttcttcttaCA
s panTro4.chr3             199823950 179 + 202329955 ccaggtgaccctgtggccgatgactaagcaaagtggcatcacagtgacctcaccatttccaccccacaagactccgccaacaggcggtctgcccctcagagcgtcccgtgggcaggagctttgtggctgtgtcagctgtgccacatcctcctgcccggcccggcctccttctccttACG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199837684 178 + 202140232 ctaggtgaccctgtggccgatgactaagcaaagtggcatcacagtgacctcaccatttccaccccacaagactcctccaacaggcggtctgccccccagagcgccccatgagtaggagctctgtggctgtgtcggctgtgccacatcctcctgcccggcccggcctccttctcctcac-
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120946584 176 + 123690457 ccaggtgaccctgtggctgatgactcagcaaagtggcatcgcagtgacctcaccatttccacc---caagacttctccagcaagcggtctgcccctcagagcaccccatgagcaggagctatgtggctgtgtcagctgtgccacatcctcctgcccggcccggcctccttctccttaca
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       95561 179 +    111706 ccagaagaccctatggccgatgactaagcaaagtggcatcgcagtgacctcaacatttccaccccacaagactcctccaacaggcgatctGCCCCTCAGAGCATCCCACAAGCAGGAGCTTTGTGGTTGTGTCAGCTGTGCTACGTCCTCCCGCCCGGCCCGGCCTCCTTCTCCCTACA
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                126612 179 + 192460366 ccagaagaccctatggccgatgactaagcaaagtggcatcgcagtgacctcaacatttccaccccacaagactcctccaacaggcgatctGCCCCTCAGAGCATCCCACAAGCAGGAGCTTTGTGGCTGTGTCAGCTGTGCTACGTCCTCCCGCCCGGCCCGGCCTCCTTCTCCTTACC
i macFas5.chr2             C 0 C 0
s chlSab2.chr15               476045 179 -  91754291 ccagatgaccctatggccgatgactaagcaaagtggcctcgcagtgacctcaacattttcaccccacaagactcctccaacaggcgatctgcccctcagagcatcccacgagcaggagctttgtggctgtgtcagctgtgccgcgtcctcccgcccggcccgccctccttctccttACG
i chlSab2.chr15            C 0 T 42
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030  98 +  31377067 I
e calJac3.chr17               987266  20 -  74750902 I
e papAnu2.chr2                124104 1311 - 187378091 M

a score=66167.000000
s hg38.chr3_KI270935v1_alt    185645 79 +    197351 CAGGTGCCACATCCTCCTGCCCAGCCCGGCCTCCTTCTCCTTACGCAGGTGCCACATCCTCCTGCCCAGCCCGGCCTCC
s panTro4.chr3             199824129 79 + 202329955 CAGGTGCCACATCCTCCTGCCCAGCCCGGCCTCCTTCTCCTTACACAGGTGCCACATCCTCCTGCCCAGCCCGGCCTCC
i panTro4.chr3             C 0 I 10
s ponAbe2.chr3             199837862 78 + 202140232 cAGATGCCACATCCTCCTGCCCGGCCCAGCCTCCTTCTCCTCAC-CAGATGCCACATCCTCCTGTCCGGCCCGGCCTCC
i ponAbe2.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       95740 79 +    111706 CAGGTGCCACGTCCTCCCGCCCGGCCCGGCCTCCTTCTCCCTACACAGGTGCCACGTCCTCCCGCCCGGCCCGGCCTCC
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                126791 79 + 192460366 CAGGTGCCACGTCCTCCCGCCCGGCCCGGCCTCCTTCTCCCTACACAGGTGCCACGTCCTCCCGCCTGGCCCGGCCTCC
i macFas5.chr2             C 0 C 0
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476224 42 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=4944.000000
s hg38.chr3_KI270935v1_alt    185724 10 +    197351 TTCTCCTTAC
s ponAbe2.chr3             199837940 10 + 202140232 TTCTCCTCAC
i ponAbe2.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       95819 10 +    111706 TTCTCCCTAC
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                126870 10 + 192460366 TTCTCCTTAC
i macFas5.chr2             C 0 C 0
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476224 42 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C
e panTro4.chr3             199824208 10 + 202329955 I

a score=38.000000
s hg38.chr3_KI270935v1_alt    185734 1 +    197351 G
s rheMac3.chrUn_JH291127       95829 1 +    111706 A
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                126880 1 + 192460366 G
i macFas5.chr2             C 0 C 0
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476224 42 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e ponAbe2.chr3             199837950 0 + 202140232 C
e nomLeu3.chr11            120946760 0 + 123690457 C
e panTro4.chr3             199824208 10 + 202329955 I

a score=14876.000000
s hg38.chr3_KI270935v1_alt    185735 18 +    197351 CAGGTGCCACATCCTCCT
s panTro4.chr3             199824218 18 + 202329955 CAGGTGCCACATCCTCCT
i panTro4.chr3             I 10 I 31
s ponAbe2.chr3             199837950 18 + 202140232 CAGATGTCACATCCTCCT
i ponAbe2.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       95830 18 +    111706 CAGGTGCCACGTCCTCCC
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                126881 18 + 192460366 CAGGTGCCACGTCCTCCC
i macFas5.chr2             C 0 C 0
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476224 42 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=12546.000000
s hg38.chr3_KI270935v1_alt    185753 28 +    197351 GCCCAGCCCGGCCTCCTTCTCCTTACGC
s ponAbe2.chr3             199837968 27 + 202140232 GCCCGGCCCGGCCTCCTTCTCCTCAC-C
i ponAbe2.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       95848 28 +    111706 ACCCGGCCCAGCCTCCTTCTCCCTACAC
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                126899 28 + 192460366 GCCCGGCCCGGCCTCCTTCTCCCTACGC
i macFas5.chr2             C 0 C 0
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476224 42 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C
e panTro4.chr3             199824236 31 + 202329955 I

a score=1422.000000
s hg38.chr3_KI270935v1_alt    185781 2 +    197351 AG
s panTro4.chr3             199824267 2 + 202329955 AG
i panTro4.chr3             I 31 C 0
s ponAbe2.chr3             199837995 2 + 202140232 GG
i ponAbe2.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       95876 2 +    111706 AG
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                126927 2 + 192460366 AG
i macFas5.chr2             C 0 C 0
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476224 42 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760 0 + 123690457 C

a score=45561.000000
s hg38.chr3_KI270935v1_alt    185783 40 +    197351 GTGCCACATCCTCCTGCCCAGCCCGGCCT----CCTTCTCCTTA
s panTro4.chr3             199824269 44 + 202329955 GTGCCACATCCTCCTGCCCAGCCTGGCCTCCGCCCTTCTCCTTA
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199837997 40 + 202140232 ATACCACATCCTCCTGTCCGGCCCGGCCT----CCTTCTCCTCA
i ponAbe2.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       95878 40 +    111706 GTGCCACGTCCTCCCACCCGGCCCAGCCT----CCTTCTCCCTA
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                126929 40 + 192460366 GTGCCACGTCCTCCCGCCCGGCCCGGCCT----CCTTCTCCTTA
i macFas5.chr2             C 0 C 0
s chlSab2.chr15               476182 40 -  91754291 gtgccgcgtcctcccgcccggcccgccct----ccttctccttA
i chlSab2.chr15            T 42 C 0
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=1000.000000
s hg38.chr3_KI270935v1_alt    185823 1 +    197351 C
s panTro4.chr3             199824313 1 + 202329955 C
i panTro4.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       95918 1 +    111706 C
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                126969 1 + 192460366 C
i macFas5.chr2             C 0 C 0
s chlSab2.chr15               476222 1 -  91754291 C
i chlSab2.chr15            C 0 C 0
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e papAnu2.chr2                124104 1311 - 187378091 M
e ponAbe2.chr3             199838037 0 + 202140232 C
e nomLeu3.chr11            120946760 0 + 123690457 C

a score=14266.000000
s hg38.chr3_KI270935v1_alt    185824 11 +    197351 GCAGGTGCCAC
s panTro4.chr3             199824314 10 + 202329955 -CAGGTGCCAC
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199838037 11 + 202140232 GCAGATGCCAC
i ponAbe2.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       95919 11 +    111706 ACAGGTGCCAC
i rheMac3.chrUn_JH291127   C 0 T 225
s macFas5.chr2                126970 11 + 192460366 GCAGGTGCCAC
i macFas5.chr2             C 0 C 0
s chlSab2.chr15               476223 11 -  91754291 GCAGGTGCCAC
i chlSab2.chr15            C 0 C 0
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=35252.000000
s hg38.chr3_KI270935v1_alt    185835 34 +    197351 ATCCTCCTGCCCAGCCCGGCCT----CCTTCTCCCTAC
s panTro4.chr3             199824324 38 + 202329955 ATCCTCCTGCCCAGCCTGGCCTCCGCCCTTCTCCTTAC
i panTro4.chr3             C 0 T 144
s ponAbe2.chr3             199838048 29 + 202140232 ATCCTCCTGCCCGGCCT---------CCTTCTCCTCAC
i ponAbe2.chr3             C 0 T 40
s rheMac3.chrUn_JH291127       95705 34 +    111706 GTCCTCCCGCCCGGCCCGGCCT----CCTTCTCCCTAC
i rheMac3.chrUn_JH291127   T 225 C 0
s macFas5.chr2                126981 34 + 192460366 GTCCTCCCGCCCGGCCCGGCCT----CCTTCTCCTTAC
i macFas5.chr2             C 0 C 0
s chlSab2.chr15               476234 34 -  91754291 ATCCGCCCGCCCGGCCCGGCCT----CCTTCTCCCTAC
i chlSab2.chr15            C 0 C 0
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=205.000000
s hg38.chr3_KI270935v1_alt    185869 1 +    197351 G
s ponAbe2.chr3             199838037 1 + 202140232 G
i ponAbe2.chr3             T 40 C 0
s rheMac3.chrUn_JH291127       95739 1 +    111706 A
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                127015 1 + 192460366 A
i macFas5.chr2             C 0 C 0
s chlSab2.chr15               476268 1 -  91754291 G
i chlSab2.chr15            C 0 C 0
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760 0 + 123690457 C
e panTro4.chr3             199824362 144 + 202329955 T

a score=58358.000000
s hg38.chr3_KI270935v1_alt    185870 55 +    197351 CAGGTGCCACATCCTCCTGCCCAGCCCGGCCT----CCTTCTCCTTACGCAGGTGCCAC
s panTro4.chr3             199824218 58 + 202329955 CAGGTGCCACATCCTCCTGCCCAGCCTGGCCTCCGCCCTTCTCCTTACG-AGGTGCCAC
i panTro4.chr3             T 144 C 0
s ponAbe2.chr3             199838038 49 + 202140232 CAGATGCCACATCCTCCTGCCCGGCCT---------CCTTCTCCTCACC-AGATGCCAC
i ponAbe2.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       95740 55 +    111706 CAGGTGCCACGTCCTCCCGCCCGGCCCGGCCT----CCTTCTCCCTACACAGGTGCCAC
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                127016 55 + 192460366 TAGGTGCCACATCCTCCTGCCTGGCCCAGCCT----CCTTCTCCTTACGCAGGTGCCAC
i macFas5.chr2             C 0 C 0
s chlSab2.chr15               476269 55 -  91754291 CAGGTGCCACATCCTCCCGCCCGGCCTGGCct----ccttctccttacacaggtgccac
i chlSab2.chr15            C 0 T 113
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=26080.000000
s hg38.chr3_KI270935v1_alt    185925 34 +    197351 ATCCTCCTGCCCAGCCCGGCCT----CCTTCTCCTTAC
s panTro4.chr3             199824276 38 + 202329955 ATCCTCCTGCCCAGCCTGGCCTCCGCCCTTCTCCTTAC
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199838087 34 + 202140232 ATCCTCCTGCCCGGCCCGGCCT----CCTTCTCCTCAC
i ponAbe2.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       95795 34 +    111706 GTCCTCCCGCCCGGCCCGGCCT----CCTTCTCCCTAC
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                127071 34 + 192460366 ATCCTCCCACCCGGCCCGGCCT----CCTTCGCCTTAC
i macFas5.chr2             C 0 T 90
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476324 113 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=68036.000000
s hg38.chr3_KI270935v1_alt    185959 101 +    197351 GCAGGTGCCACATCCTCCTGCCCAGCCCGGCCT----CCTTCTCCTTACGCAGGTGCCACATCCTCCTGCCCAGCCCGGCCT----CCTTCTCCTTACGCAGGTGCCAC
s panTro4.chr3             199824314 106 + 202329955 -CAGGTGCCACATCCTCCTGCCCAGCCTGGCCTCCGCCCTTCTCCTTAC-CAGGTGCCACATCCTCCTGCCCAGCCTGGCCTCCGCCCTTCTCCTTACG-AGGTGCCAC
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199838121  93 + 202140232 -CAGATGCCACATCCTCCTGCCCGGCCCGGCCT----CCTTCTTCTCAC-CAGGTGCCACATCCTCCTGCCCGGCCT---------CCTTCTCCTCACC-AGATGCCAC
i ponAbe2.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       95829 101 +    111706 ACAGGTGCCACGTCCTCCCACCCGGCCCAGCCT----CCTTCTCCCTACACAGGTGCCACGTCCTCCCACCCGGCCCAGCCT----CCTTCTCCCTACACAGGTGCCAC
i rheMac3.chrUn_JH291127   C 0 T 90
s macFas5.chr2                127015 101 + 192460366 ATAGGTGCCACATCCTCCTGCCTGGCCCAGCCT----CCTTCTCCTTACGCAGGTGCCACATCCTCCCACCCGGCCCGGCCT----CCTTCGCCTTACGCAGGTGCCAC
i macFas5.chr2             T 90 T 90
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030  98 +  31377067 I
e calJac3.chr17               987266  20 -  74750902 I
e chlSab2.chr15               476324 113 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760   0 + 123690457 C

a score=9616.000000
s hg38.chr3_KI270935v1_alt    186060 12 +    197351 ATCCTCCTGCCC
s panTro4.chr3             199824420 12 + 202329955 ATCCTCCTGCCC
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199838214 12 + 202140232 ATCCTCCTGCCC
i ponAbe2.chr3             C 0 I 43
s rheMac3.chrUn_JH291127       95840 12 +    111706 GTCCTCCCACCC
i rheMac3.chrUn_JH291127   T 90 C 0
s macFas5.chr2                127026 12 + 192460366 ATCCTCCTGCCT
i macFas5.chr2             T 90 C 0
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476324 113 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=61068.000000
s hg38.chr3_KI270935v1_alt    186072 78 +    197351 AGCCCGGCCT----CCTTCTCCTTACGCAGGTGCCACATCCTCCTGCCCAGCCCGGCCTCCTTCTCCTTACACAGGTGCCAC
s panTro4.chr3             199824432 81 + 202329955 AGCCTGGCCTCCGCCCTTCTCCTTAC-CAGGTGCCACAtcctcctgcccagcccggcctccttctccttaagcaggtgccac
i panTro4.chr3             C 0 T 45
s ponAbe2.chr3             199838269 78 + 202140232 GGCCCGGCCT----CCTTCTCCTTAAGCAGGTGCCACATCCTCCTGCCCGGCCCGGCCTCCTTCTCCTTAAGCAGGTGCCAC
i ponAbe2.chr3             I 43 C 0
s rheMac3.chrUn_JH291127       95852 78 +    111706 GGCCCAGCCT----CCTTCTCCCTACACAGGTGCCACGTCCTCCCACCCGGCCCAGCCTCCTTCTCCCTACACAGGTGCCAC
i rheMac3.chrUn_JH291127   C 0 T 45
s macFas5.chr2                127038 78 + 192460366 GGCCCAGCCT----CCTTCTCCTTACGCAGGTGCCACATCCTCCCACCCGGCCCGGCCTCCTTCGCCTTACGCAGGTGCCAC
i macFas5.chr2             C 0 T 45
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476324 113 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=22422.000000
s hg38.chr3_KI270935v1_alt    186150 34 +    197351 ATCCTCCTGCCCAGCCCGGCCTCCTTTTCCTTAC
s panTro4.chr3             199824468 34 + 202329955 Atcctcctgcccagcccggcctccttctccttaa
i panTro4.chr3             T 45 C 0
s ponAbe2.chr3             199838347 29 + 202140232 ATCCTCCTGCCCA-----GCCTCCTTCTCCTCAC
i ponAbe2.chr3             C 0 I 44
s rheMac3.chrUn_JH291127       95885 34 +    111706 GTCCTCCCACCCGGCCCAGCCTCCTTCTCCCTAC
i rheMac3.chrUn_JH291127   T 45 C 0
s macFas5.chr2                127071 34 + 192460366 ATCCTCCCACCCGGCCCGGCCTCCTTCGCCTTAC
i macFas5.chr2             T 45 C 0
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476324 113 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=67.000000
s hg38.chr3_KI270935v1_alt    186184 1 +    197351 A
s panTro4.chr3             199824502 1 + 202329955 g
i panTro4.chr3             C 0 T 285
s rheMac3.chrUn_JH291127       95919 1 +    111706 A
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                127105 1 + 192460366 G
i macFas5.chr2             C 0 C 0
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476324 113 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e ponAbe2.chr3             199838376 44 + 202140232 I
e nomLeu3.chr11            120946760 0 + 123690457 C

a score=9206.000000
s hg38.chr3_KI270935v1_alt    186185 10 +    197351 CAGGTGCCAC
s panTro4.chr3             199824218 10 + 202329955 CAGGTGCCAC
i panTro4.chr3             T 285 C 0
s ponAbe2.chr3             199838420 10 + 202140232 CAGATGCCAC
i ponAbe2.chr3             I 44 C 0
s rheMac3.chrUn_JH291127       95920 10 +    111706 CAGGTGCCAC
i rheMac3.chrUn_JH291127   C 0 T 51
s macFas5.chr2                127106 10 + 192460366 CAGGTGCCAC
i macFas5.chr2             C 0 T 45
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476324 113 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=15391.000000
s hg38.chr3_KI270935v1_alt    186195 39 +    197351 ATCCTCCTGCTCAGCCCGGCCTCCGCCCTTCTCCTTACG
s panTro4.chr3             199824228 39 + 202329955 ATCCTCCTGCCCAGCCTGGCCTCCGCCCTTCTCCTTACG
i panTro4.chr3             C 0 T 179
s ponAbe2.chr3             199838430 35 + 202140232 ATCCTCCTGCCCGGCCCGGCCT----CCTTCTCCTTAAG
i ponAbe2.chr3             C 0 T 515
s macFas5.chr2                127071 35 + 192460366 ATCCTCCCACCCGGCCCGGCCT----CCTTCGCCTTACG
i macFas5.chr2             T 45 C 0
e rheMac3.chrUn_JH291127       95930 51 +    111706 T
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476324 113 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=902.000000
s hg38.chr3_KI270935v1_alt    186234 4 +    197351 CAGA
s ponAbe2.chr3             199837950 4 + 202140232 CAGA
i ponAbe2.chr3             T 515 C 0
s macFas5.chr2                127106 4 + 192460366 CAGG
i macFas5.chr2             C 0 C 0
e rheMac3.chrUn_JH291127       95930 51 +    111706 T
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476324 113 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760 0 + 123690457 C
e panTro4.chr3             199824267 179 + 202329955 T

a score=5296.000000
s hg38.chr3_KI270935v1_alt    186238 6 +    197351 TGCCAC
s panTro4.chr3             199824088 6 + 202329955 tgccac
i panTro4.chr3             T 179 C 0
s ponAbe2.chr3             199837954 6 + 202140232 TGTCAC
i ponAbe2.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       95879 6 +    111706 TGCCAC
i rheMac3.chrUn_JH291127   T 51 C 0
s macFas5.chr2                127110 6 + 192460366 TGCCAC
i macFas5.chr2             C 0 T 90
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476324 113 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760 0 + 123690457 C

a score=18731.000000
s hg38.chr3_KI270935v1_alt    186244 22 +    197351 ATCCTCCTGCCCGGCCCGGCCT
s panTro4.chr3             199824094 22 + 202329955 atcctcctgcccggcccggcct
i panTro4.chr3             C 0 I 151
s ponAbe2.chr3             199837960 22 + 202140232 ATCCTCCTGCCCGGCCCGGCCT
i ponAbe2.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       95885 22 +    111706 GTCCTCCCACCCGGCCCAGCCT
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                127026 22 + 192460366 ATCCTCCTGCCTGGCCCAGCCT
i macFas5.chr2             T 90 C 0
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476324 113 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=1200.000000
s hg38.chr3_KI270935v1_alt    186266 2 +    197351 CC
s ponAbe2.chr3             199837982 2 + 202140232 CC
i ponAbe2.chr3             C 0 I 171
s rheMac3.chrUn_JH291127       95907 2 +    111706 CC
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                127048 2 + 192460366 CC
i macFas5.chr2             C 0 C 0
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476324 113 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760 0 + 123690457 C
e panTro4.chr3             199824116 151 + 202329955 I

a score=2522.000000
s hg38.chr3_KI270935v1_alt    186268 11 +    197351 TTCTCCTTACC-
s ponAbe2.chr3             199838155 11 + 202140232 TTCTTCTCACC-
i ponAbe2.chr3             I 171 C 0
s rheMac3.chrUn_JH291127       95909 12 +    111706 TTCTCCCTACAC
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                127050 12 + 192460366 TTCTCCTTACGC
i macFas5.chr2             C 0 C 0
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476324 113 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C
e panTro4.chr3             199824116 151 + 202329955 I

a score=8730.000000
s hg38.chr3_KI270935v1_alt    186279 9 +    197351 AGGTGCCAC
s panTro4.chr3             199824267 9 + 202329955 AGGTGCCAC
i panTro4.chr3             I 151 C 0
s ponAbe2.chr3             199838166 9 + 202140232 AGGTGCCAC
i ponAbe2.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       95921 9 +    111706 AGGTGCCAC
i rheMac3.chrUn_JH291127   C 0 T 232
s macFas5.chr2                127062 9 + 192460366 AGGTGCCAC
i macFas5.chr2             C 0 C 0
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476324 113 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760 0 + 123690457 C

a score=2748.000000
s hg38.chr3_KI270935v1_alt    186288 7 +    197351 ATCCTCC-
s panTro4.chr3             199824276 7 + 202329955 ATCCTCC-
i panTro4.chr3             C 0 T 47
s ponAbe2.chr3             199838175 7 + 202140232 ATCCTCC-
i ponAbe2.chr3             C 0 I 1
s macFas5.chr2                127071 8 + 192460366 ATCCTCCC
i macFas5.chr2             C 0 C 0
e rheMac3.chrUn_JH291127       95930 232 +    111706 T
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476324 113 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760 0 + 123690457 C

a score=5330.000000
s hg38.chr3_KI270935v1_alt    186295 14 +    197351 GCCCAGCCTGGCCT
s panTro4.chr3             199824236 14 + 202329955 GCCCAGCCTGGCCT
i panTro4.chr3             T 47 C 0
s ponAbe2.chr3             199838183  9 + 202140232 -----GCCCGGCCT
i ponAbe2.chr3             I 1 C 0
s macFas5.chr2                127079 14 + 192460366 ACCCGGCCCGGCCT
i macFas5.chr2             C 0 T 135
e rheMac3.chrUn_JH291127       95930 232 +    111706 T
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476324 113 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=-120.000000
s hg38.chr3_KI270935v1_alt    186309 4 +    197351 CCGC
s panTro4.chr3             199824250 4 + 202329955 CCGC
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199838192 2 + 202140232 CC--
i ponAbe2.chr3             C 0 C 0
e rheMac3.chrUn_JH291127       95930 232 +    111706 T
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476324 113 -  91754291 T
e macFas5.chr2                127093 135 + 192460366 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760 0 + 123690457 C

a score=600.000000
s hg38.chr3_KI270935v1_alt    186313 2 +    197351 CC
s panTro4.chr3             199824254 2 + 202329955 CC
i panTro4.chr3             C 0 T 48
s macFas5.chr2                126958 2 + 192460366 CC
i macFas5.chr2             T 135 C 0
e rheMac3.chrUn_JH291127       95930 232 +    111706 T
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476324 113 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e ponAbe2.chr3             199838194 0 + 202140232 C
e nomLeu3.chr11            120946760 0 + 123690457 C

a score=17578.000000
s hg38.chr3_KI270935v1_alt    186315 42 +    197351 TTCTCCTTAC-CAGGTGCCACATCCTCCTGCTCAGCCTGGCCT
s panTro4.chr3             199824208 42 + 202329955 TTCTCCTTAC-CAGGTGCCACATCCTCCTGCCCAGCCTGGCCT
i panTro4.chr3             T 48 C 0
s ponAbe2.chr3             199838194 37 + 202140232 TTCTCCTCAC-CAGATGCCACATCCTCCTGCCC-----GGCCT
i ponAbe2.chr3             C 0 C 0
s macFas5.chr2                126960 43 + 192460366 TTCTCCTTACGCAGGTGCCACGTCCTCCCGCCCGGCCCGGCCT
i macFas5.chr2             C 0 T 254
e rheMac3.chrUn_JH291127       95930 232 +    111706 T
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476324 113 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=4941.000000
s hg38.chr3_KI270935v1_alt    186357 19 +    197351 CCGCCCTTCTCCTTACAAG
s panTro4.chr3             199824250 19 + 202329955 CCGCCCTTCTCCTTACGAG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199838231 19 + 202140232 CCGCCCTTCTCCTTACCAG
i ponAbe2.chr3             C 0 C 0
e rheMac3.chrUn_JH291127       95930 232 +    111706 T
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476324 113 -  91754291 T
e macFas5.chr2                127003 254 + 192460366 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=32719.000000
s hg38.chr3_KI270935v1_alt    186376 79 +    197351 GTGCCACATCCTCCTGCTCAGCCTGGCCTCCGCCGTTCTCCTTAC-CAGGTGCCACATCCTCCTGCCCAGCCTGGCCTCC
s panTro4.chr3             199824269 79 + 202329955 GTGCCACATCCTCCTGCCCAGCCTGGCCTCCGCCCTTCTCCTTAC-CAGGTGCCACATCCTCCTGCCCAGCCTGGCCTCC
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199838250 74 + 202140232 ATGCCACATCCTCCTGCCCGGCCCGGCCTCC----TTCTCCTTAAGCAGGTGCCACATCCTCCTGCCCGGCCCGGCCT--
i ponAbe2.chr3             C 0 C 0
s macFas5.chr2                126749 76 + 192460366 GTGCTACGTCCTCCCGCCCGGCCCGGCCTCC----TTCTCCTTACCCAGGTGCCACGTCCTCCCGCCCGGCCCGGCCTCC
i macFas5.chr2             T 254 I 223
e rheMac3.chrUn_JH291127       95930 232 +    111706 T
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476324 113 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=200.000000
s hg38.chr3_KI270935v1_alt    186455 2 +    197351 GC
s panTro4.chr3             199824348 2 + 202329955 GC
i panTro4.chr3             C 0 C 0
e rheMac3.chrUn_JH291127       95930 232 +    111706 T
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476324 113 -  91754291 T
e macFas5.chr2                126825 223 + 192460366 I
e papAnu2.chr2                124104 1311 - 187378091 M
e ponAbe2.chr3             199838324 0 + 202140232 C
e nomLeu3.chr11            120946760 0 + 123690457 C

a score=6159.000000
s hg38.chr3_KI270935v1_alt    186457 13 +    197351 CCTTCTCCTTACG
s panTro4.chr3             199824350 13 + 202329955 CCTTCTCCTTACC
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199838324 13 + 202140232 CCTTCTCCTTAAG
i ponAbe2.chr3             C 0 T 44
s macFas5.chr2                127048 13 + 192460366 CCTTCTCCTTACG
i macFas5.chr2             I 223 I 1
e rheMac3.chrUn_JH291127       95930 232 +    111706 T
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476324 113 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=16343.000000
s hg38.chr3_KI270935v1_alt    186470 31 +    197351 AGGTGCCACATCCTCCTGCCCAGCCTGGCCT
s panTro4.chr3             199824363 31 + 202329955 AGGTGCCACATCCTCCTGCCCAGCCTGGCCT
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199838293 31 + 202140232 AGGTGCCACATCCTCCTGCCCGGCCCGGCCT
i ponAbe2.chr3             T 44 C 0
s macFas5.chr2                127062 31 + 192460366 AGGTGCCACATCCTCCCACCCGGCCCGGCCT
i macFas5.chr2             I 1 T 344
e rheMac3.chrUn_JH291127       95930 232 +    111706 T
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476324 113 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=3470.000000
s hg38.chr3_KI270935v1_alt    186501 17 +    197351 CCGCCCTTCTCCTTACG
s panTro4.chr3             199824394 17 + 202329955 CCGCCCTTCTCCTTACG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199838324 13 + 202140232 ----CCTTCTCCTTAAG
i ponAbe2.chr3             C 0 T 111
e rheMac3.chrUn_JH291127       95930 232 +    111706 T
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476324 113 -  91754291 T
e macFas5.chr2                127093 344 + 192460366 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=191.000000
s hg38.chr3_KI270935v1_alt    186518 2 +    197351 AG
s panTro4.chr3             199824411 2 + 202329955 AG
i panTro4.chr3             C 0 C 0
e rheMac3.chrUn_JH291127       95930 232 +    111706 T
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476324 113 -  91754291 T
e macFas5.chr2                127093 344 + 192460366 T
e papAnu2.chr2                124104 1311 - 187378091 M
e ponAbe2.chr3             199838337 111 + 202140232 T
e nomLeu3.chr11            120946760 0 + 123690457 C

a score=5746.000000
s hg38.chr3_KI270935v1_alt    186520 24 +    197351 GTGCCACATCCTCCTGCCCAGCCT
s panTro4.chr3             199824413 24 + 202329955 GTGCCACATCCTCCTGCCCAGCCT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                126749 24 + 192460366 GTGCTACGTCCTCCCGCCCGGCCC
i macFas5.chr2             T 344 C 0
e rheMac3.chrUn_JH291127       95930 232 +    111706 T
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476324 113 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e ponAbe2.chr3             199838337 111 + 202140232 T
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=3786.000000
s hg38.chr3_KI270935v1_alt    186544 11 +    197351 GGCCTCCGCCC
s panTro4.chr3             199824437 11 + 202329955 GGCCTCCGCCC
i panTro4.chr3             C 0 T 48
s ponAbe2.chr3             199838226 11 + 202140232 GGCCTCCGCCC
i ponAbe2.chr3             T 111 C 0
s macFas5.chr2                126773  7 + 192460366 GGCCTCC----
i macFas5.chr2             C 0 C 0
e rheMac3.chrUn_JH291127       95930 232 +    111706 T
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476324 113 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=4449.000000
s hg38.chr3_KI270935v1_alt    186555 13 +    197351 TTCTCCTTACCAG-
s panTro4.chr3             199824400 13 + 202329955 TTCTCCTTACGAG-
i panTro4.chr3             T 48 C 0
s ponAbe2.chr3             199838237 13 + 202140232 TTCTCCTTACCAG-
i ponAbe2.chr3             C 0 C 0
s macFas5.chr2                126780 14 + 192460366 TTCTCCTTACCCAG
i macFas5.chr2             C 0 T 45
e rheMac3.chrUn_JH291127       95930 232 +    111706 T
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476324 113 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=11099.000000
s hg38.chr3_KI270935v1_alt    186568 24 +    197351 GTGCCACATCCTCCTGCTCAGCCT
s panTro4.chr3             199824413 24 + 202329955 GTGCCACATCCTCCTGCCCAGCCT
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199838250 24 + 202140232 ATGCCACATCCTCCTGCCCGGCCC
i ponAbe2.chr3             C 0 T 290
s macFas5.chr2                126749 24 + 192460366 GTGCTACGTCCTCCCGCCCGGCCC
i macFas5.chr2             T 45 C 0
e rheMac3.chrUn_JH291127       95930 232 +    111706 T
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476324 113 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=1353.000000
s hg38.chr3_KI270935v1_alt    186592 9 +    197351 GGCCTCCGC
s panTro4.chr3             199824437 9 + 202329955 GGCCTCCGC
i panTro4.chr3             C 0 C 0
s macFas5.chr2                126773 7 + 192460366 GGCCTCC--
i macFas5.chr2             C 0 C 0
e rheMac3.chrUn_JH291127       95930 232 +    111706 T
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476324 113 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e ponAbe2.chr3             199838274 290 + 202140232 T
e nomLeu3.chr11            120946760 0 + 123690457 C

a score=600.000000
s hg38.chr3_KI270935v1_alt    186601 2 +    197351 CC
s panTro4.chr3             199824446 2 + 202329955 CC
i panTro4.chr3             C 0 C 0
s chlSab2.chr15               476211 2 -  91754291 cc
i chlSab2.chr15            T 113 C 0
e rheMac3.chrUn_JH291127       95930 232 +    111706 T
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e macFas5.chr2                126780 0 + 192460366 C
e papAnu2.chr2                124104 1311 - 187378091 M
e ponAbe2.chr3             199838274 290 + 202140232 T
e nomLeu3.chr11            120946760 0 + 123690457 C

a score=50101.000000
s hg38.chr3_KI270935v1_alt    186603 65 +    197351 TTCTCCTTAC-CAGGTGCCACATCCTCCTGCCCGGCCCGGCCTCCTTCTCCTTACGCAGGTGCCAC
s panTro4.chr3             199824448 65 + 202329955 TTCTCCTTAC-CAGGTGCCACAtcctcctgcccagcccggcctccttctccttaagcaggtgccac
i panTro4.chr3             C 0 T 163
s ponAbe2.chr3             199837984 64 + 202140232 TTCTCCTCAC-CGGATACCACATCCTCCTGTCCGGCCCGGCCTCCTTCTCCTCA-GCAGATGCCAC
i ponAbe2.chr3             T 290 C 0
s macFas5.chr2                126780 66 + 192460366 TTCTCCTTACCCAGGTGCCACGTCCTCCCGCCCGGCCCGGCCTCCTTCTCCCTACACAGGTGCCAC
i macFas5.chr2             C 0 C 0
s chlSab2.chr15               476213 66 -  91754291 ttctccttACGCAGGTGCCACATCCGCCCGCCCGGCCCGGCCTCCTTCTCCCTACGCAGGTGCCAC
i chlSab2.chr15            C 0 C 0
e rheMac3.chrUn_JH291127       95930 232 +    111706 T
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=5539.000000
s hg38.chr3_KI270935v1_alt    186668 11 +    197351 ATCCTCCTGCC
s ponAbe2.chr3             199838048 11 + 202140232 ATCCTCCTGCC
i ponAbe2.chr3             C 0 C 0
s macFas5.chr2                126846 11 + 192460366 GTCCTCCCGCC
i macFas5.chr2             C 0 T 108
s chlSab2.chr15               476279 11 -  91754291 ATCCTCCCGCC
i chlSab2.chr15            C 0 C 0
e rheMac3.chrUn_JH291127       95930 232 +    111706 T
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C
e panTro4.chr3             199824513 163 + 202329955 T

a score=673.000000
s hg38.chr3_KI270935v1_alt    186679  6 +    197351 CGGCCT-----
s ponAbe2.chr3             199838059  6 + 202140232 CGGCCT-----
i ponAbe2.chr3             C 0 C 0
s chlSab2.chr15               476290 11 -  91754291 CGGCCTGGCct
i chlSab2.chr15            C 0 C 0
e rheMac3.chrUn_JH291127       95930 232 +    111706 T
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e macFas5.chr2                126857 108 + 192460366 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C
e panTro4.chr3             199824513 163 + 202329955 T

a score=6966.000000
s hg38.chr3_KI270935v1_alt    186685 15 +    197351 CCTTCTCCTTAC-CAG
s panTro4.chr3             199824350 15 + 202329955 CCTTCTCCTTAC-CAG
i panTro4.chr3             T 163 C 0
s ponAbe2.chr3             199838065 15 + 202140232 CCTTCTCCTCAC-CAG
i ponAbe2.chr3             C 0 C 0
s chlSab2.chr15               476301 16 -  91754291 ccttctccttacacag
i chlSab2.chr15            C 0 C 0
e rheMac3.chrUn_JH291127       95930 232 +    111706 T
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e macFas5.chr2                126857 108 + 192460366 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=8518.000000
s hg38.chr3_KI270935v1_alt    186700 7 +    197351 GTGCCAC
s panTro4.chr3             199824365 7 + 202329955 GTGCCAC
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199838080 7 + 202140232 ATGCCAC
i ponAbe2.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       95698 7 +    111706 GTGCTAC
i rheMac3.chrUn_JH291127   T 232 C 0
s macFas5.chr2                126749 7 + 192460366 GTGCTAC
i macFas5.chr2             T 108 C 0
s chlSab2.chr15               476317 7 -  91754291 gtgccac
i chlSab2.chr15            C 0 T 122
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760 0 + 123690457 C

a score=18785.000000
s hg38.chr3_KI270935v1_alt    186707 22 +    197351 ATCCTCCTGCCCAGCCCGGCCT
s panTro4.chr3             199824372 22 + 202329955 ATCCTCCTGCCCAGCCTGGCCT
i panTro4.chr3             C 0 T 307
s ponAbe2.chr3             199838087 22 + 202140232 ATCCTCCTGCCCGGCCCGGCCT
i ponAbe2.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       95705 22 +    111706 GTCCTCCCGCCCGGCCCGGCCT
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                126756 22 + 192460366 GTCCTCCCGCCCGGCCCGGCCT
i macFas5.chr2             C 0 C 0
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476324 122 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=6056.000000
s hg38.chr3_KI270935v1_alt    186729 15 +    197351 CCTTCTCCTTAC-CAG
s ponAbe2.chr3             199838109 15 + 202140232 CCTTCTCCTCAC-CAG
i ponAbe2.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       95727 16 +    111706 CCTTCTCCCTACACAG
i rheMac3.chrUn_JH291127   C 0 T 45
s macFas5.chr2                126778 16 + 192460366 CCTTCTCCTTACCCAG
i macFas5.chr2             C 0 C 0
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476324 122 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C
e panTro4.chr3             199824394 307 + 202329955 T

a score=67216.000000
s hg38.chr3_KI270935v1_alt    186744 87 +    197351 GTGCCACATCCTCCTGCCCAGCCCGGCCTCCTTCTCCTTACGCAGGTGCCACATCCTCCTGCCCGGCCCGGCCTCCTTCTCCTTACA
s panTro4.chr3             199824087 87 + 202329955 gtgccacatcctcctgcccggcccggcctccttctccttACGCAGGTGCCACATCCTCCTGCCCAGCCCGGCCTCCTTCTCCTTACA
i panTro4.chr3             T 307 C 0
s ponAbe2.chr3             199838124 80 + 202140232 ATGCCACATCCTCCTGCCCGGCCCGGCCTCCTTCTTCTCAC-CAGGTGCCACATCCTCCT-----GCCCGGCCTCCTTCTCCTCAC-
i ponAbe2.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       95698 87 +    111706 GTGCTACGTCCTCCCGCCCGGCCCGGCCTCCTTCTCCCTACACAGGTGCCACGTCCTCCCGCCCGGCCCGGCCTCCTTCTCCCTACA
i rheMac3.chrUn_JH291127   T 45 I 45
s macFas5.chr2                126794 87 + 192460366 GTGCCACGTCCTCCCGCCCGGCCCGGCCTCCTTCTCCCTACACAGGTGCCACGTCCTCCCGCCTGGCCCGGCCTCCTTCTCCTTACG
i macFas5.chr2             C 0 C 0
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476324 122 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=55398.000000
s hg38.chr3_KI270935v1_alt    186831 76 +    197351 CAGATGCCACATCCTCCTGCCCGGCCCGGCCTCCTTCTCCTTAC-CAGGTGCCACATCCTTCTGCCCGGCCCGGCCT
s panTro4.chr3             199824174 76 + 202329955 CAGGTGCCACATCCTCCTGCCCAGCCCGGCCTCCTTCTCCTTAC-CAGGTGCCACATCCTCCTGCCCAGCCTGGCCT
i panTro4.chr3             C 0 T 44
s ponAbe2.chr3             199838204 74 + 202140232 CAGATGCCACATCCTCCTGCCCGGCCT-CCGCCCTTCTCCTTAC-CAGATGCCACATCCTCCTGCCCGGCCCGGCC-
i ponAbe2.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       95830 77 +    111706 CAGGTGCCACGTCCTCCCACCCGGCCCAGCCTCCTTCTCCCTACACAGGTGCCACGTCCTCCCACCCGGCCCAGCCT
i rheMac3.chrUn_JH291127   I 45 C 0
s macFas5.chr2                126881 77 + 192460366 CAGGTGCCACGTCCTCCCGCCCGGCCCGGCCTCCTTCTCCCTACGCAGGTGCCACGTCCTCCCGCCCGGCCCGGCCT
i macFas5.chr2             C 0 C 0
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476324 122 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=6510.000000
s hg38.chr3_KI270935v1_alt    186907 12 +    197351 CCTTCTCCTTAC
s panTro4.chr3             199824206 12 + 202329955 CCTTCTCCTTAC
i panTro4.chr3             T 44 C 0
s rheMac3.chrUn_JH291127       95907 12 +    111706 CCTTCTCCCTAC
i rheMac3.chrUn_JH291127   C 0 T 134
s macFas5.chr2                126958 12 + 192460366 CCTTCTCCTTAC
i macFas5.chr2             C 0 I 1
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476324 122 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e ponAbe2.chr3             199838278  0 + 202140232 C
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=4479.000000
s hg38.chr3_KI270935v1_alt    186919 18 +    197351 CGGGTGCCACATCCTCCT
s panTro4.chr3             199824218 18 + 202329955 CAGGTGCCACATCCTCCT
i panTro4.chr3             C 0 C 0
s macFas5.chr2                126971 18 + 192460366 CAGGTGCCACGTCCTCCC
i macFas5.chr2             I 1 T 240
e rheMac3.chrUn_JH291127       95919 134 +    111706 T
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476324 122 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e ponAbe2.chr3             199838278  0 + 202140232 C
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=1514.000000
s hg38.chr3_KI270935v1_alt    186937 9 +    197351 GCCCGGCCT
s panTro4.chr3             199824236 9 + 202329955 GCCCAGCCT
i panTro4.chr3             C 0 T 116
s ponAbe2.chr3             199838278 1 + 202140232 --------T
i ponAbe2.chr3             C 0 C 0
s chlSab2.chr15               476202 9 -  91754291 gcccgccct
i chlSab2.chr15            T 122 C 0
e rheMac3.chrUn_JH291127       95919 134 +    111706 T
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e macFas5.chr2                126989 240 + 192460366 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760 0 + 123690457 C

a score=2128.000000
s hg38.chr3_KI270935v1_alt    186946 12 +    197351 CCTTCTCCTTA-C
s ponAbe2.chr3             199838279 13 + 202140232 CCTTCTCCTTAAG
i ponAbe2.chr3             C 0 C 0
s chlSab2.chr15               476211 12 -  91754291 ccttctccttA-C
i chlSab2.chr15            C 0 I 1
e rheMac3.chrUn_JH291127       95919 134 +    111706 T
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e macFas5.chr2                126989 240 + 192460366 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C
e panTro4.chr3             199824245 116 + 202329955 T

a score=1746.000000
s hg38.chr3_KI270935v1_alt    186958 3 +    197351 CAG
s panTro4.chr3             199824129 3 + 202329955 CAG
i panTro4.chr3             T 116 C 0
s ponAbe2.chr3             199838292 3 + 202140232 CAG
i ponAbe2.chr3             C 0 C 0
s chlSab2.chr15               476224 3 -  91754291 CAG
i chlSab2.chr15            I 1 C 0
e rheMac3.chrUn_JH291127       95919 134 +    111706 T
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e macFas5.chr2                126989 240 + 192460366 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760 0 + 123690457 C

a score=50882.000000
s hg38.chr3_KI270935v1_alt    186961 60 +    197351 GTGCCACATCCTCCTGCCCGGCCCGGCCTCCTTCTCCTTATGCAGGTGCCACATCCTCCT
s panTro4.chr3             199824132 60 + 202329955 GTGCCACATCCTCCTGCCCAGCCCGGCCTCCTTCTCCTTACACAGGTGCCACATCCTCCT
i panTro4.chr3             C 0 T 18
s ponAbe2.chr3             199838295 60 + 202140232 GTGCCACATCCTCCTGCCCGGCCCGGCCTCCTTCTCCTTAAGCAGGTGCCACATCCTCCT
i ponAbe2.chr3             C 0 C 0
s macFas5.chr2                126749 60 + 192460366 GTGCTACGTCCTCCCGCCCGGCCCGGCCTCCTTCTCCTTACCCAGGTGCCACGTCCTCCC
i macFas5.chr2             T 240 C 0
s chlSab2.chr15               476227 60 -  91754291 GTGCCACATCCGCCCGCCCGGCCCGGCCTCCTTCTCCCTACGCAGGTGCCACATCCTCCC
i chlSab2.chr15            C 0 C 0
e rheMac3.chrUn_JH291127       95919 134 +    111706 T
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=2607.000000
s hg38.chr3_KI270935v1_alt    187021 5 +    197351 GCCCG
s ponAbe2.chr3             199838355 5 + 202140232 GCCCA
i ponAbe2.chr3             C 0 C 0
s macFas5.chr2                126809 5 + 192460366 GCCCG
i macFas5.chr2             C 0 T 65
s chlSab2.chr15               476287 5 -  91754291 GCCCG
i chlSab2.chr15            C 0 C 0
e rheMac3.chrUn_JH291127       95919 134 +    111706 T
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760 0 + 123690457 C
e panTro4.chr3             199824192 18 + 202329955 T

a score=1173.000000
s hg38.chr3_KI270935v1_alt    187026 4 +    197351 GCCT
s ponAbe2.chr3             199838360 4 + 202140232 GCCT
i ponAbe2.chr3             C 0 C 0
s chlSab2.chr15               476292 4 -  91754291 GCCT
i chlSab2.chr15            C 0 T 72
e rheMac3.chrUn_JH291127       95919 134 +    111706 T
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e macFas5.chr2                126814 65 + 192460366 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760 0 + 123690457 C
e panTro4.chr3             199824192 18 + 202329955 T

a score=1024.000000
s hg38.chr3_KI270935v1_alt    187030 12 +    197351 CCTTCTCCTTAC
s ponAbe2.chr3             199838364 12 + 202140232 CCTTCTCCTCAC
i ponAbe2.chr3             C 0 C 0
e rheMac3.chrUn_JH291127       95919 134 +    111706 T
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476296 72 -  91754291 T
e macFas5.chr2                126814 65 + 192460366 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C
e panTro4.chr3             199824192 18 + 202329955 T

a score=873.000000
s hg38.chr3_KI270935v1_alt    187042 3 +    197351 CAG
s panTro4.chr3             199824174 3 + 202329955 CAG
i panTro4.chr3             T 18 C 0
s ponAbe2.chr3             199838376 3 + 202140232 CAG
i ponAbe2.chr3             C 0 C 0
e rheMac3.chrUn_JH291127       95919 134 +    111706 T
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476296 72 -  91754291 T
e macFas5.chr2                126814 65 + 192460366 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760 0 + 123690457 C

a score=820.000000
s hg38.chr3_KI270935v1_alt    187045 3 +    197351 GTA
s panTro4.chr3             199824177 3 + 202329955 GTG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199838379 3 + 202140232 ATA
i ponAbe2.chr3             C 0 C 0
s macFas5.chr2                126749 3 + 192460366 GTG
i macFas5.chr2             T 65 C 0
e rheMac3.chrUn_JH291127       95919 134 +    111706 T
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476296 72 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760 0 + 123690457 C

a score=6617.000000
s hg38.chr3_KI270935v1_alt    187048 26 +    197351 CCACATCCTCCTGCCCAGCCCGGCCT
s panTro4.chr3             199824180 26 + 202329955 CCACATCCTCCTGCCCAGCCCGGCCT
i panTro4.chr3             C 0 T 119
s macFas5.chr2                126752 26 + 192460366 CTACGTCCTCCCGCCCGGCCCGGCCT
i macFas5.chr2             C 0 C 0
e rheMac3.chrUn_JH291127       95919 134 +    111706 T
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476296 72 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e ponAbe2.chr3             199838382  0 + 202140232 C
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=1146.000000
s hg38.chr3_KI270935v1_alt    187074 12 +    197351 CCTTCTCCTTAC
s macFas5.chr2                126778 12 + 192460366 CCTTCTCCTTAC
i macFas5.chr2             C 0 I 1
e rheMac3.chrUn_JH291127       95919 134 +    111706 T
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476296 72 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e ponAbe2.chr3             199838382  0 + 202140232 C
e nomLeu3.chr11            120946760  0 + 123690457 C
e panTro4.chr3             199824206 119 + 202329955 T

a score=1746.000000
s hg38.chr3_KI270935v1_alt    187086 3 +    197351 CAG
s rheMac3.chrUn_JH291127       95785 3 +    111706 CAG
i rheMac3.chrUn_JH291127   T 134 T 90
s macFas5.chr2                126791 3 + 192460366 CAG
i macFas5.chr2             I 1 T 45
s chlSab2.chr15               476224 3 -  91754291 CAG
i chlSab2.chr15            T 72 C 0
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e papAnu2.chr2                124104 1311 - 187378091 M
e ponAbe2.chr3             199838382 0 + 202140232 C
e nomLeu3.chr11            120946760 0 + 123690457 C
e panTro4.chr3             199824206 119 + 202329955 T

a score=75438.000000
s hg38.chr3_KI270935v1_alt    187089 87 +    197351 GTGCCACATCCTCCTGCCCAGCCCGGCCTCCTTCTCCTTACGCAGGTGCCACATCCTCCTGCCCGGCCTGGCCTCCTTCTCCTTACA
s panTro4.chr3             199824087 87 + 202329955 gtgccacatcctcctgcccggcccggcctccttctccttACGCAGGTGCCACATCCTCCTGCCCAGCCCGGCCTCCTTCTCCTTACA
i panTro4.chr3             T 119 C 0
s rheMac3.chrUn_JH291127       95698 87 +    111706 GTGCTACGTCCTCCCGCCCGGCCCGGCCTCCTTCTCCCTACACAGGTGCCACGTCCTCCCGCCCGGCCCGGCCTCCTTCTCCCTACA
i rheMac3.chrUn_JH291127   T 90 C 0
s macFas5.chr2                126749 87 + 192460366 GTGCTACGTCCTCCCGCCCGGCCCGGCCTCCTTCTCCTTACCCAGGTGCCACGTCCTCCCGCCCGGCCCGGCCTCCTTCTCCCTACA
i macFas5.chr2             T 45 C 0
s chlSab2.chr15               476227 87 -  91754291 GTGCCACATCCGCCCGCCCGGCCCGGCCTCCTTCTCCCTACGCAGGTGCCACATCCTCCCGCCCGGCCTGGCctccttctccttaca
i chlSab2.chr15            C 0 T 132
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e papAnu2.chr2                124104 1311 - 187378091 M
e ponAbe2.chr3             199838382  0 + 202140232 C
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=36466.000000
s hg38.chr3_KI270935v1_alt    187176 76 +    197351 CAGATGCCACTTCCTCCTGCCCGGCCCGGCCTCCTTCTCCTTAC-AAGGTGCCACATCCTCCTGCCCAGCCCGGCCT
s panTro4.chr3             199824174 76 + 202329955 CAGGTGCCACATCCTCCTGCCCAGCCCGGCCTCCTTCTCCTTAC-CAGGTGCCACATCCTCCTGCCCAGCCTGGCCT
i panTro4.chr3             C 0 T 44
s rheMac3.chrUn_JH291127       95785 77 +    111706 CAGGTGCCACGTCCTCCCGCCCGGCCCGGCCTCCTTCTCCCTACACAGGTGCCACGTCCTCCCACCCGGCCCAGCCT
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                126836 77 + 192460366 CAGGTGCCACGTCCTCCCGCCTGGCCCGGCCTCCTTCTCCTTACGCAGGTGCCACGTCCTCCCGCCCGGCCCGGCCT
i macFas5.chr2             C 0 C 0
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476314 132 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e ponAbe2.chr3             199838382  0 + 202140232 C
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=20744.000000
s hg38.chr3_KI270935v1_alt    187252 44 +    197351 CCTTCTCCTTAC-CAGGTGCCACATCCTCCTGCCCGGCCCAGCCT
s panTro4.chr3             199824206 44 + 202329955 CCTTCTCCTTAC-CAGGTGCCACATCCTCCTGCCCAGCCTGGCCT
i panTro4.chr3             T 44 T 121
s rheMac3.chrUn_JH291127       95862 45 +    111706 CCTTCTCCCTACACAGGTGCCACGTCCTCCCACCCGGCCCAGCCT
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                126913 45 + 192460366 CCTTCTCCCTACGCAGGTGCCACGTCCTCCCGCCCGGCCCGGCCT
i macFas5.chr2             C 0 C 0
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476314 132 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e ponAbe2.chr3             199838382  0 + 202140232 C
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=2932.000000
s hg38.chr3_KI270935v1_alt    187296 12 +    197351 CCTTCTTCTTAC
s rheMac3.chrUn_JH291127       95907 12 +    111706 CCTTCTCCCTAC
i rheMac3.chrUn_JH291127   C 0 I 1
s macFas5.chr2                126958 12 + 192460366 CCTTCTCCTTAC
i macFas5.chr2             C 0 T 179
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476314 132 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e ponAbe2.chr3             199838382  0 + 202140232 C
e nomLeu3.chr11            120946760  0 + 123690457 C
e panTro4.chr3             199824250 121 + 202329955 T

a score=1746.000000
s hg38.chr3_KI270935v1_alt    187308 3 +    197351 CAG
s panTro4.chr3             199824129 3 + 202329955 CAG
i panTro4.chr3             T 121 C 0
s rheMac3.chrUn_JH291127       95920 3 +    111706 CAG
i rheMac3.chrUn_JH291127   I 1 C 0
s macFas5.chr2                126791 3 + 192460366 CAG
i macFas5.chr2             T 179 C 0
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476314 132 -  91754291 T
e papAnu2.chr2                124104 1311 - 187378091 M
e ponAbe2.chr3             199838382 0 + 202140232 C
e nomLeu3.chr11            120946760 0 + 123690457 C

a score=6332.000000
s hg38.chr3_KI270935v1_alt    187311 7 +    197351 GTGCCAC
s panTro4.chr3             199824132 7 + 202329955 GTGCCAC
i panTro4.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       95923 7 +    111706 GTGCCAC
i rheMac3.chrUn_JH291127   C 0 T 225
s macFas5.chr2                126794 7 + 192460366 GTGCCAC
i macFas5.chr2             C 0 C 0
s chlSab2.chr15               476182 7 -  91754291 gtgccgc
i chlSab2.chr15            T 132 C 0
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e papAnu2.chr2                124104 1311 - 187378091 M
e ponAbe2.chr3             199838382 0 + 202140232 C
e nomLeu3.chr11            120946760 0 + 123690457 C

a score=19816.000000
s hg38.chr3_KI270935v1_alt    187318 24 +    197351 ATCCTCCTGCCCGGCCCGGCCTCG
s panTro4.chr3             199824139 24 + 202329955 ATCCTCCTGCCCAGCCCGGCCTCC
i panTro4.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       95705 24 +    111706 GTCCTCCCGCCCGGCCCGGCCTCC
i rheMac3.chrUn_JH291127   T 225 C 0
s macFas5.chr2                126801 24 + 192460366 GTCCTCCCGCCCGGCCCGGCCTCC
i macFas5.chr2             C 0 I 45
s chlSab2.chr15               476189 24 -  91754291 gtcctcccgcccggcccgccctcc
i chlSab2.chr15            C 0 C 0
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e papAnu2.chr2                124104 1311 - 187378091 M
e ponAbe2.chr3             199838382  0 + 202140232 C
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=14979.000000
s hg38.chr3_KI270935v1_alt    187342 17 +    197351 TTCTCCTTACACAGGTG
s panTro4.chr3             199824163 17 + 202329955 TTCTCCTTACACAGGTG
i panTro4.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       95729 17 +    111706 TTCTCCCTACACAGGTG
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                126870 17 + 192460366 TTCTCCTTACGCAGGTG
i macFas5.chr2             I 45 C 0
s chlSab2.chr15               476213 17 -  91754291 ttctccttACGCAGGTG
i chlSab2.chr15            C 0 C 0
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e papAnu2.chr2                124104 1311 - 187378091 M
e ponAbe2.chr3             199838382  0 + 202140232 C
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=15762.000000
s hg38.chr3_KI270935v1_alt    187359 13 +    197351 CCACATCCTCCTG
s panTro4.chr3             199824180 13 + 202329955 CCACATCCTCCTG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199838382 13 + 202140232 CCACATCCTCCTG
i ponAbe2.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       95746 13 +    111706 CCACGTCCTCCCG
i rheMac3.chrUn_JH291127   C 0 I 338
s macFas5.chr2                126887 13 + 192460366 CCACGTCCTCCCG
i macFas5.chr2             C 0 C 0
s chlSab2.chr15               476230 13 -  91754291 CCACATCCGCCCG
i chlSab2.chr15            C 0 C 0
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=21055.000000
s hg38.chr3_KI270935v1_alt    187372 15 +    197351 CCCGGCCCGGCCTCC
s panTro4.chr3             199824193 15 + 202329955 CCCAGCCCGGCCTCC
i panTro4.chr3             C 0 I 240
s ponAbe2.chr3             199838395 15 + 202140232 TCCGGCCCGGCCTCC
i ponAbe2.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       96097 15 +    111706 CCCGGCCCGGCCTCC
i rheMac3.chrUn_JH291127   I 338 C 0
s macFas5.chr2                126900 15 + 192460366 CCCGGCCCGGCCTCC
i macFas5.chr2             C 0 C 0
s chlSab2.chr15               476243 15 -  91754291 CCCGGCCCGGCCTCC
i chlSab2.chr15            C 0 C 0
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=13223.000000
s hg38.chr3_KI270935v1_alt    187387 10 +    197351 TTCTCCTTAC
s panTro4.chr3             199824448 10 + 202329955 TTCTCCTTAC
i panTro4.chr3             I 240 C 0
s ponAbe2.chr3             199838410 10 + 202140232 TTCTCCTTAC
i ponAbe2.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       96112 10 +    111706 TTCTCCTTAC
i rheMac3.chrUn_JH291127   C 0 I 1
s macFas5.chr2                126915 10 + 192460366 TTCTCCCTAC
i macFas5.chr2             C 0 I 1
s chlSab2.chr15               476258 10 -  91754291 TTCTCCCTAC
i chlSab2.chr15            C 0 I 46
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=37320.000000
s hg38.chr3_KI270935v1_alt    187397 44 +    197351 CAGGTGCCACAtcctcctgcccagcccggcctccttctccttaa
s panTro4.chr3             199824458 44 + 202329955 CAGGTGCCACAtcctcctgcccagcccggcctccttctccttaa
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199838420 44 + 202140232 CAGATGCCACATCCTCCTGCCCGGCCCGGCCTCCTTCTCCTTAA
i ponAbe2.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       96123 44 +    111706 CAGGTGCCACGTCCTCCCACCCGGCCCGGCCTCCTTCGCCTTAC
i rheMac3.chrUn_JH291127   I 1 C 0
s macFas5.chr2                126926 44 + 192460366 CAGGTGCCACGTCCTCCCGCCCGGCCCGGCCTCCTTCTCCTTAC
i macFas5.chr2             I 1 I 135
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476268 46 -  91754291 I
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760  0 + 123690457 C

a score=1000.000000
s hg38.chr3_KI270935v1_alt    187441 1 +    197351 g
s panTro4.chr3             199824502 1 + 202329955 g
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199838464 1 + 202140232 G
i ponAbe2.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       96167 1 +    111706 G
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                127105 1 + 192460366 G
i macFas5.chr2             I 135 C 0
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476268 46 -  91754291 I
e papAnu2.chr2                124104 1311 - 187378091 M
e nomLeu3.chr11            120946760 0 + 123690457 C

a score=358882.000000
s hg38.chr3_KI270935v1_alt    187442 208 +    197351 caggtgccactcccctatag----ccttcacattccttccaccaactcagcatttgcttctgggaggacccgacCCGAGACACTCACGTAAAAGAGGATGCCCACGTACAGATGTGGCAGCAGGCCCTCCgagctgggattcagacccaggtcagcacgactccaaaatctttcctcctCTGCAGCTCCTTATTCCATGGTTCAGCAGGGAG
s panTro4.chr3             199824503 208 + 202329955 caggtgccactcccctatag----ccttcacattccttccaccaactcagcatttgcttctgggaggacccgacctgagacaCTCACGTAAAAGAGGATGCCCACGTACAGATGTGGAAGCAGGCCCTCCgagctgggattcagacccaggtcagcacgactccaaaatctttcctcctCTGCAGCTCCTTATTCCATGGTTCAGCAGGGAG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199838465 208 + 202140232 CAGGTGCCACTCCCCTATAG----CCTTCGCATTCCTTCCACCAGCTCAGCATTTGCTTCTGGGAGGACTCAACCCTAGACACTCACGTAAAAGAGGATGCCCATGTACAGATGTGGAAGCCGGCCCTCCAagctgggattcagacccaggtcagcatgactccaaaacctgtcctcctCTGCGGCTCCTTATTCCACAGTTCAGGAAGGAG
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120946760 208 + 123690457 caggtgccactcccctatag----ccttcacattccttccaccagctcagcatttgcttctgggaggacccgacCCGAGACACTCACATAAAAGAGGATGCCCATTTACAGACGTGGAAGCTGGCCCTCCTagctgggattcagacccaggtcagctcgactccaaaacctgtcctcctCTGCAGCTCCTTATTCCATGGTTCAGCAGGGAG
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       96168 211 +    111706 CAGGTGCCACTCCCCTATAGCCTCCCTCCACATTCCTTCCACCAGCTCAGCATTTGCTTCCAGGAGGACCTGACCCGAGACACTCACTTAAAACAGGATGCCCGTGTACAGATGTGGAAGCTGGGCCTCCgagctgggattcagacccaggtcagcacgactccaaaacctgtcctcctct-cagctctgtattccacAGTTCAGCAGGGAG
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                127106 212 + 192460366 CAGGTGCCACTCCCCTATAGCCTCCCTCCACATTCCTTCCACCAGCTCAGCATTTGCTTCCAGGAGGACCTGACCCGAGACACTCACTTAAAACAGGATGCCCGTGTACAGATGTGGAAGCTGGTCCTCCgagctgggattcagacccaggtcagcacgactccaaaacctgtcctcctccGCAGCTCTGTATTCCACGGTTCAGCAGGGAG
i macFas5.chr2             C 0 I 3
s chlSab2.chr15               476314 211 -  91754291 caggtgccactcccctatagcctccctccacattccttccaccagctcagcgtttgcttccaggaggaccAGACCCGAGACACTCACTTAAAACAGGA-GCCCGGGTACAGATGTGGAAGCTGGCCCTCCgagctgggattcagacccaggtcagcacgactccaaaacctatcctcctccGCAGCTCTGTATTCCACGGTTCAGCAGGGAG
i chlSab2.chr15            I 46 C 0
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030  98 +  31377067 I
e calJac3.chr17               987266  20 -  74750902 I
e papAnu2.chr2                124104 1311 - 187378091 M

a score=4500.000000
s hg38.chr3_KI270935v1_alt    187650 3 +    197351 GCG
s panTro4.chr3             199824711 3 + 202329955 GCG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199838673 3 + 202140232 GCG
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120946968 3 + 123690457 GCG
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       96379 3 +    111706 GCG
i rheMac3.chrUn_JH291127   C 0 C 0
s chlSab2.chr15               476525 3 -  91754291 GCG
i chlSab2.chr15            C 0 C 0
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e macFas5.chr2                127318 3 + 192460366 I
e papAnu2.chr2                124104 1311 - 187378091 M

a score=28864.000000
s hg38.chr3_KI270935v1_alt    187653 19 +    197351 GGCGGGCTG-GAGGCCCCGG
s panTro4.chr3             199824714 19 + 202329955 GGCGGGCTG-GAGGCCCCGG
i panTro4.chr3             C 0 I 211
s ponAbe2.chr3             199838676 19 + 202140232 GGTTGGCTG-GAGGCCCCGG
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120946971 20 + 123690457 CGTGGGCTGTGGGGCCCCTG
i nomLeu3.chr11            C 0 I 1
s rheMac3.chrUn_JH291127       96382 19 +    111706 GGTGGGCTG-GGGGCCCCGG
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                127321 19 + 192460366 GGTGGGCTG-GGGGCCCCGG
i macFas5.chr2             I 3 C 0
s chlSab2.chr15               476528 19 -  91754291 GGTGGGCTG-GGGCCCCCGG
i chlSab2.chr15            C 0 C 0
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e papAnu2.chr2                124104 1311 - 187378091 M

a score=72592.000000
s hg38.chr3_KI270935v1_alt    187672 46 +    197351 CACCTGCTGTATGTGGTCTCTATCCGAGGCCATGGTGAAAGCAGGG
s panTro4.chr3             199824944 46 + 202329955 CACCTGCTGTATGTGGTCTCTATCCGAGGCCATGGTGAAAGCAGGG
i panTro4.chr3             I 211 C 0
s ponAbe2.chr3             199838695 34 + 202140232 CACCTGCTGTATGTGGTCCCTGTCCGAGGCCACG------------
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120946992 46 + 123690457 CACCTGCTGTATGTGGTCCCTATCCGAGGCCATGGCGAAAGCAGGT
i nomLeu3.chr11            I 1 C 0
s rheMac3.chrUn_JH291127       96401 46 +    111706 CACCTGCTGTGTATGGTCCCTATCCGAGGCCACGATGAAAGCAGGG
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                127340 46 + 192460366 CACCTGCTGTGTGTGGTCCCTATCCGAGGCCACGACGAAAGCAGGG
i macFas5.chr2             C 0 T 68
s chlSab2.chr15               476547 46 -  91754291 CACCTGCTGTGTGTGGTCCCTATCCGAGGCCACGATGAAAGCAGGG
i chlSab2.chr15            C 0 C 0
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e papAnu2.chr2                124104 1311 - 187378091 M

a score=573.000000
s hg38.chr3_KI270935v1_alt    187718 2 +    197351 AG
s panTro4.chr3             199824990 2 + 202329955 AG
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120947038 2 + 123690457 AG
i nomLeu3.chr11            C 0 C 0
e rheMac3.chrUn_JH291127       96447 0 +    111706 C
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030 98 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476593 0 -  91754291 C
e macFas5.chr2                127386 68 + 192460366 T
e papAnu2.chr2                124104 1311 - 187378091 M
e ponAbe2.chr3             199838729 0 + 202140232 C

a score=9646.000000
s hg38.chr3_KI270935v1_alt    187720  35 +    197351 GTGGGTGGGCTG-------------------------------------------------------------------------GGGGCCC-AGCACCTGCTGTATGT
s panTro4.chr3             199824992  36 + 202329955 GTGGGTGGGCTG-------------------------------------------------------------------------GGGGCCCGGGCACCTGCTGTATGT
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120947040 109 + 123690457 GCGGGCGGGCTGTGGGGCCCCTGGTACCTGCTGTATGTGGTCCCTATCCGAGGCCATGGCGAAAGCAGGTAGGCGGGCGGGCTGTGGGGCCCCGGCACCTGCTGTATGT
i nomLeu3.chr11            C 0 C 0
s macFas5.chr2                127318  36 + 192460366 GCGGGTGGGCTG-------------------------------------------------------------------------GGGGCCCCGGCACCTGCTGTGTGT
i macFas5.chr2             T 68 C 0
e rheMac3.chrUn_JH291127       96447   0 +    111706 C
e mm10.chr16                65474291 1552 -  98207768 I
e canFam3.chr33             29116030  98 +  31377067 I
e calJac3.chr17               987266  20 -  74750902 I
e chlSab2.chr15               476593   0 -  91754291 C
e papAnu2.chr2                124104 1311 - 187378091 M
e ponAbe2.chr3             199838729   0 + 202140232 C

a score=2187.000000
s hg38.chr3_KI270935v1_alt    187755 3 +    197351 GGC
s panTro4.chr3             199825028 3 + 202329955 GGT
i panTro4.chr3             C 0 C 0
s nomLeu3.chr11            120947149 3 + 123690457 GGT
i nomLeu3.chr11            C 0 C 0
s macFas5.chr2                127354 3 + 192460366 GGT
i macFas5.chr2             C 0 C 0
s canFam3.chr33             29116128 3 +  31377067 GGC
i canFam3.chr33            I 98 C 0
e rheMac3.chrUn_JH291127       96447 0 +    111706 C
e mm10.chr16                65474291 1552 -  98207768 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               476593 0 -  91754291 C
e papAnu2.chr2                124104 1311 - 187378091 M
e ponAbe2.chr3             199838729 0 + 202140232 C

a score=138308.000000
s hg38.chr3_KI270935v1_alt    187758 103 +    197351 CTCTAT-CTGAGGCCATG----------------------------------------------------------------------GCGAAAGCAGGGGCCCTGGTACTAGGGTCACACAAA---GGCCACTGTCATTCTCTTGGGATTCGGTTTCT-----CCTTTCCCTAAAAGTGCC
s panTro4.chr3             199825031 173 + 202329955 CTCTAT-CTGAGGCCATGGCGAAAGCAGGGAGGCGGGAGGGCTGGGGGGCCGGGCACCTGCTGTGTGTGGTCTCTATCCGAGGCCACAGCGAAAGCAGGGGCCCTAGTACTAGGGTCACACAAA---GGCCACTGTCATTCTCTTGGGATTCGGTTTCT-----CCTTTCCCTAAAAGTGCC
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199838729  86 + 202140232 ----------------------------------------------------------------------------------------GTGAAAGCAGGCGCCCTGGTACTAGGGTCACACAAA---GGCCACTGTCATTCTCTTGGGACTCGGTTTCT-----CCTTTCTCTAAAAATGCC
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120947152 103 + 123690457 CTCTAT-CCGAGGCCACG----------------------------------------------------------------------GAGAAAGCAGGGGCCCTGGTGCTAGGGCCACACAAA---GGCCACTGTCGTTCTCTTGGGATTCAGTTGCT-----CCTTTCTCTAAAAGTGCC
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       96447  77 +    111706 ----------------------------------------------------------------------------------------------------GCCCTGGTACTAGGGCCACACAAAAAGAGCCAGTGTCATTCTCTTGGGTTTGAGTTTCT-----CCATTCTCTAAAAGTGCC
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                127357 106 + 192460366 CCCTAT-CCGAGGCCACG----------------------------------------------------------------------ACGAAAGCAGGGGCCCTGGTACTAGGGCCACACAAAAAGAGCCAGTGTCATTCTCTTGGGTTTGAGTTTCT-----CCATTCTCTAAAAGTGCC
i macFas5.chr2             C 0 C 0
s chlSab2.chr15               476593  77 -  91754291 ----------------------------------------------------------------------------------------------------GCCCTGGTACTAGGGCCACACAACAAAAGCCAGAGTCATTCTCTTGGGTTTGGGTTTCT-----CCTTTCTCTAAAAGTGCC
i chlSab2.chr15            C 0 C 0
s mm10.chr16                65475843 100 -  98207768 CTCTGTCCCAAGTCCACG----------------------------------------------------------------------GAGAAGGCG-----TTTGGCATTTGGGCCGCACAAA------GACAGTCCTCCTCCCAGGATTGAGTTTCTCAGCCCCTTTCTCT-GAAGTGCC
i mm10.chr16               I 1552 C 0
s canFam3.chr33             29116131 109 +  31377067 CTCGGCTCCCAGACCCCG----------------------------------------------------------------------GGGAAAGTGGGGGCCCTGGCGTTTGGGCCACATAAA---GGCCCCCATCATTCTTCCAAGATGGGGTTTCTCAGCCCACGTCTTTAAAAGTGCC
i canFam3.chr33            C 0 I 103
e calJac3.chr17               987266  20 -  74750902 I
e papAnu2.chr2                124104 1311 - 187378091 M

a score=329683.000000
s hg38.chr3_KI270935v1_alt    187861 176 +    197351 AAGCATTCTCACGCCAATTAGCTCATTTCCTGTCTCATCTCACCTCTGTGGTGGAGCAGGGCATGATTTTTACGCATGCAACGTCTTCTTACG-GGCATCCCTGTGAAGCAG-GGCCACCCC-----------GGG-GCACAGGAGG--------GCCTGGAGG------------TCCAGGGATCTAAACTCATTCCATTCACCCAGCC
s panTro4.chr3             199825204 176 + 202329955 AAGCATTCTCACGCCAATTAGCTCATTTCCTGTCTCATCTCACCTCTGTGGTGGAGCAGGGCATGATTTCTACGCACGCAACGTCTTCTTACG-GGCATCCCCGTGAAGCAG-GGCCACCCC-----------GGG-GCACAGGAGG--------GCCTGGAGG------------TCCAGGGATCTCAACTCATTCCATTCACCCAGGC
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199838815 175 + 202140232 AAGCATTCTCACA-CAATTAGCTCATTTCCCGTCTCATCTCACCTCTGTGGTGGAGCAGGGCATGAGGCCTACGCACGCAACATCTTCTTACC-GGCATCCCCGTGGAGCAG-GGCCACCCC-----------GGG-GCACAGGAGG--------GCCTGGAGG------------TCTAGGGATCTAAACTCATTCCATTCACCCAGCC
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120947255 175 + 123690457 AAGCGTTCTCACACCGATGAGCTCATTTCCCATCTCATCTCACCTCTGT-GTGGAGCGGGACATGATGCCTACGCATGCAACGTCTTCTTACG-GGCATCCCCGTGAAGCAG-GGCCACCCC-----------AGG-GCACAGGAGG--------GCCTAGAGG------------TCCAGGGATCTAAACTCATTCCATTCACCCAGGC
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       96524 175 +    111706 AAGCATTCTCACGCCAATTAGCTCATGTCCCGTCTCATCTTACCTCTGTGGTGGAGTGGGACACGATGCCTACACACACAACGTCTTCTTGAG-GGCGTCCCCGTGAAGCAG-GGCC-TCCC-----------GGG-GCACAGGAGG--------GCCTGGAGG------------CCCAGGGATCTAAACCCATTCCATCCACCCAGCC
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                127463 175 + 192460366 AAGCATTCTCACGCCAATTAGCTCATGTCCCATCTCATCTTACCTCTGTGGTGGAGTGGGACACGATGCCTACACACACAACGTCTTCTTGAG-GGCGTCCCCGTGAAGCAG-GGCC-TCCC-----------GGG-GCACAGGAGG--------GCCTGGAGG------------CCCAGGGATCTAAACCCATTCCATCCACCCAGCC
i macFas5.chr2             C 0 C 0
s chlSab2.chr15               476670 176 -  91754291 AAGCATTCTCACGCCAATTAGCTCATGTCCCGTCTCATTTTACCTCTGTGGTGGAGTGGGACATGATGCCTACACACGCCACGTCTTCTTGAG-GGCGTCCCCGTGAAGCAG-GGCCACCCC-----------GGG-GCAGAGGAAG--------GCCTGGAGG------------CCCAGGGATCTAAACCCATTCCATCCACCTAGCC
i chlSab2.chr15            C 0 C 0
s mm10.chr16                65475943 151 -  98207768 AAGCATTTTCTTAGCGATTAGCTCACTTCTCTTTAC------------------------------------------CAACATCT--GGGCA-AGCGTCCCCATGAACCAG-GGGCTGCTTTGGGTGCGCAGGAG-GCATAGGAGGCCAGGGTTGGCTTAAAG------------CCCAGGAATCTCAAATTGTTCAGTTAGGCCAGCT
i mm10.chr16               C 0 C 0
s canFam3.chr33             29116343 188 +  31377067 GAGCATCTTCATGCCAATTAGCTCAGTTCCT-TCTCATTTGACTTCTGAGGCATTGGGGGGCATAATGCTTACCCCAGCAGCATCTTCCTGCCTGGGGTCTCTGTGAAGGGGAAGCCGCCCT-----------GAGTGTGCAGGCAG--------AGATCGAGGGGAGATACTGACTCAGGGGCCCCCAAGTC--TGCATTTACCCATCC
i canFam3.chr33            I 103 I 203
e calJac3.chr17               987266  20 -  74750902 I
e papAnu2.chr2                124104 1311 - 187378091 M

a score=204132.000000
s hg38.chr3_KI270935v1_alt    188037 102 +    197351 TTAAGGAGAA-GAAAACCGAGGCCAGGAAGTCAGCAAGAACATGAAGTCGGTGACCCAGCATCCAGGTCCCCGGATTTGCCACCTGTGTCCTTTTGTGGGGCT
s panTro4.chr3             199825380 102 + 202329955 TTAAGGAGAA-GAAAACCGAGGCCAGGAAGTCAGCAAGAACATGAAGTCGGTGACCCAGCATCCAGGTCCCCGGATTTGCCACCTGTGTCCTTTTGTGGGGCT
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199838990  78 + 202140232 TT-------------------------AAGTCAGCGAGAACATGAAGTCGGTGACCCAGCATCCAGGTCCCCGGATTTGCCACCTGTGTCCTTTGGTGGGGCT
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120947430 102 + 123690457 TTAAGGAGAA-GAAAACTGAGGCAGGGAAGTCAGCGAGAGCACGAAGTCGGTGACCCAGCCTCCGGGTCCCTGGGTTGGCCGCCTGTGTCCTTCGGTGGGGCT
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       96699 102 +    111706 TTAAGGAGAA-GAAAGCCCAGGCCAGGAAGTCAGCGAGAACGTGAAGTCGGTGAGCCAGCATCCAGGTCCCCGGATTTGCCACCTGTGTCCTTTGGTGGGGCT
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                127638 102 + 192460366 TTAAGGAGAA-GAAAGCCCAGGCCAGGAAGTCAGCGAGAACGTGAAGTCGGTGAGCCAGCATCCAGGTCCCCGGATTTGCCACCTGTGTCCTTTGGTGGGGCT
i macFas5.chr2             C 0 C 0
s chlSab2.chr15               476846 102 -  91754291 TTAAGGAGAA-GAAAACCAAGGCCAGGAAGTCAGCGAGAACAGGAAGTTGGTGAGCCAGCATCCAGGTCCCTGGATTTGCCACCTGTGTCCTTTGGTGGGGCT
i chlSab2.chr15            C 0 C 0
s mm10.chr16                65476094 102 -  98207768 TTAGTCAGAAGGAAGACCTAGGCCAGGAAGTTCACCGCAACAGCAAGTGGGAAAGAC-GTATCCAAGCCCTCCAACTTACCACCCCCATCCTACTGCTGGGCT
i mm10.chr16               C 0 I 1750
s canFam3.chr33             29116734 102 +  31377067 TTAAAGGGAA-GAAAACCAAGGCCAGGAAGGTAACCACAGGGCTAAGTCAAAAACCCAGCTCCTTGGGCCCCAGATTTGCTCTCCGTGTCCTACACTTAGGTT
i canFam3.chr33            I 203 C 0
e calJac3.chr17               987266  20 -  74750902 I
e papAnu2.chr2                124104 1311 - 187378091 M

a score=1119786.000000
s hg38.chr3_KI270935v1_alt    188139 606 +    197351 TCCCTTTGTAAAGCTTGAAAgaataagaggatcttaacataattttaaaactggaagagaccctggtgaccatgtcatccgaagccctcattctaccgtggaggaggtgtgggcccagagagaagggag-gtccttgttggcgcagccggtgagcggcagggtgtgtcccggagcccgggtttccagcgccctctctgtcttgct-gccgagcGTCCACGTCTGTTCGGTTGTCTTTGCACACTCCTGGCTCCCAG---TTAGACCGCTGCTCCCAGGCGGAACGTCTGCCACAGGGGACACGTACATGCGGCCACCATGGGGACTGAATG----------------------AGGGTGGGCCCACAAAGCTCTCCAACGCGGGGTTCTGACAGAAAGCCCAACCCGGGCCGAAAGCCATCTTTTAAAATGAAGTTTAC-------TGGGtttcttttttcattat-aaagtaatgcacactgtccacag-agatatgaaaa-tatttaaaagtagagagaagaaaaa--catcatcaatgtttcaccacccaggaacaaccctattaacgcgttgagagatttctggcttgtttctcatacataGCTCATATCCATAGTTTAAATCTATC--ATATCCTAGATATA
s panTro4.chr3             199825482 605 + 202329955 TCCCTTTGTAAAGCTTGAAAgaataagaggatcttaacataattttaaaactggaagagaccctggtgaccatgtcgtccgaagccctcattctaccgtggaggaggtgtgggcccagagagaagggag-gtcctcgctggcgcagccggtgagtggcagg-tgtgtcccggagcccgggtttccagcgccctctctgtcttgct-gccgagcGTCCACGTCTGTTCGGTTGTCTTTGCACGCTCCTGGCTCCCAG---TTACACCGCTGCTCCCAGGCGGAATGTCTGCCACAGGGGACACATACATGCGGCCACCATGGGGACTGAATG----------------------AGGGTGGGCCCACAAAGCTCTCCAATGCGGGGTTCTGACAGAAAGCCCAACCCAGGCCGAAAGCCATCTTTTAAAATAAAGTTTAC-------TGGGTTTCTTTTTTCATTAT-AAAGTAATGCACACTGTCCACAG-AGATATGAAAA-TATTTAAAAGTAGAGAGAAGAAAAA--CATCATCAATGTTTCAGCACCCAGGAACAACCCTATTAATGCGTTGAGAGATTTCCGGCTTGTTTCTCATACACAGCTCATACCCATAGTTTAAATCTATC--ATATCCTAGATATA
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199839068 626 + 202140232 TCCCTTTGTAAAGCTTGAAAgaataagaggatcttaacataattttaaaactggaagagaccctggtgactgtgtcgtccgaagtcctcattctaccgtggaggaagtgtgggcccggagagaagggag-gtcctcgttggcacagccggtgagcggcagg-tgcgtcccggagcccgggtttccggcgccctctctgtC-TGCT-GCCAAGCGTCCACGTCTGTTCGGTTGTTTTTGCACACTCCTGGCTCCCAG---TTAGACCGCTGCTCCCAGGCGGAACCTCTGCCACAGGGGACACATACATGCGGTCACCATGGGGACCAAATGAGGGTGGGCCATCTTCTCAGACAGGGTGGGCCCACAAAGCTCTCCAACGCGGGGTTCTGACAGAAAGCCCAACCCAGGCCGAAAGCCGTCTTTTAAAATAAAGTTTAC-------TGGGtttcttttttcattat-aaagtaatgcacactgtccatgg-agatatgaaaa-tacttaaaagtagagagaagaaaaa--catcatcaatgtttcaccacccaggaacaaccctattaatgcgttgagagatttctggcttgttcctcatacataGCTCATATCCATAGTTTAAATCTATC--ATATCCTAGATATA
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120947532 598 + 123690457 TCCCTTTGTAAAGCTTGAAAgaataagaggatcttaacgtaattttaaaactggaagagaccctggtgaccgtgtcgtccgaagtcctcattctaccgcgggggaggtgtgggcccagagagaagggag-gtcctcgttggcgcagccggtgagcggcagg-tgcgtcccggagcccgggtttccggcgccctctctgtcttgct-gcCGAGTGTCCACGTCCGTTCGGTTGTCTTTGCACACTCCTGGCTCCCAG---TTAGACCGCTGCTCCCAGGCGGAACCTCTGCCACAGGGGACACGTACATGTAGCCACCATGGGGAC----------------------------AAGGTGGGCCCACAAAGCTCTCCAAC-CGGGGTTCTGACAGAAAGCCCAACCCAGGCCGAAAGCCATCTTTTAAAATAAAGTTTAC-------TGCGTTTCTTTTTCCATTAT-AAAGTAATGCACACTCTGCACAG-AGATATGAAAA-TACTTAAACGTAGAGAGAAGAAAAA--CATCATCAACGTTTCACCACCCAGGAACAACCCTACCAACGCGTTGAGAGAGTTCTGGCTTGTTCCTCATACATAGCTCATATCCATGGTTTAAATCTATC--ATATCCTAGATATA
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       96801 622 +    111706 TCCCTTTGTAAAGCTTGAAAgaataagaggatcttaacatgattttaaaactggaagagaccctggtgaccgtgtcgtccaaagtcctcattctactgtgggggaggtgtgggcccagggggaagggag-gccctcgttggcacagccggcgagcggcagg-tgcgtcccggagcccgggtttccggcgccttctctgtcttgct-gctgagcGTCCACGTCCGTTTGGTTGCCTTTGCACACTCCTGGCTCCCGG---TGAGACCACTGATCCCAGGCTGAACCTCTGCCGCAGCGG-CACGTACATGTGGCCACCATGGGGACTGAATGGGGGTGGGCCATCTTCCCGGACAGGGTGGGCCCACAAAGCTCTTCGACGTGGGATTCTGACAGAAAGCCCAACCCAGGCCAAAAGCCATCTTTTAAAATAAAGTTTAC-------TGGGT---TTTTACCATGGT-AAAGTAATGCACACTCTCCACAG-AGACATGAAAA-CACTTGAAAGTAGAGAGAAGAAAAA--CATCATTGATGTCTCGCCACCCTAGAACAAGCC-ACTAACGCGCTGAGAGAGCTCTGGCTTTTTCCTCAAACACAGCTCAGAGCCATAGTTTAAATCGGTC--GTATCCTAGATACA
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                127740 622 + 192460366 TCCCTTTGTAAAGCTTGAAAgaataagaggatcttaacatgattttaaaactggaagagaccctggtgaccgtgtcgtccaaagtcctcattctactgtgggggaggtgtgggcccagggggaagggag-gccctcgttggcacagccggcgagcggcagg-tgcgtcccggagcccgggtttccggcgccttctctgtcttgct-gccgagcGTCCACGTCCGTTTGGTTGCCTTTGCACACTCCTGGCTCCCGG---TGAGACCACTGATCCCAGGCTGAACCTCTGCCGCAGCGG-CACGTACATGTGGCCACCATGGGGACTGAATGGGGGTGGGCCATCTTCCCGGACAGGGTGGGCCCACAAAGCTCTTCGACGTGGGATTCTGACAGAAAGCCCAACCCAGGCCAAAAGCCATCTTTTAAAATAAAGTTTAC-------TGGGT---TTTTACCATGGT-AAAGTAATGCACACTCTCCACAG-AGACATGAAAA-CACTTGAAAGTAGAGAGAAGAAAAA--TGTCATTGATGTCTCGCCACCCTAGAACAAGCC-ACTAACGCGCTGAGAGAGCTCTGGCTTTTTCCTCAAACACAGCTCAGAGCCATAGTTTAAATCGGTC--GTATCCTAGATACA
i macFas5.chr2             C 0 C 0
s chlSab2.chr15               476948 618 -  91754291 TCCCTTTGTAAAGCTTGAAAgaataagaggattttaa-atgattttaaaactggaagagaccctggtgaccatgtcgtccaaagtcctcattctactgtgggggaggtgtgggcccagggggaagggag-gccctcgttggcacagccggcgagcagcagg-tgcgtcccggagcccaggtttccggcgccttctctgtcttgct-gccgagcGTCCACGTCCGTTTGGTTGCCTTTGCACACTCCTGGCTGCCGG---TGAGAGCGCTGATCCCAGGCTGAACCTCTGCCGCAGCGA-CACGTACATGTGGTCACCGTGGGGACAGAATGGGGGCGGGCCATCTTCCCAGACGGG--GGGCCCACAAAGCTCCTCAACGCGGGATTCTGACAGAAAGCCCAA-CCAGGCCAAAAGCCATCTTTTAAAATAAAGTTTAC-------TGGGT---TTTTTCCATTAT-AAAGTAATGCACACTCTCCATAG-AGACATGAAAA-CACTTGAAAGTAGAGAGAAGAAAAA--CATCATCGATGTGTCGCCACCCTAGAACAAGCC-ACTAACGCACTGAGAGGTCTCTGGCTTTTTCCTCAAACACAGCTCAGAGCCATGGTTTAAATCGGTC--GTATCCTAGATACA
i chlSab2.chr15            C 0 C 0
s canFam3.chr33             29116836 622 +  31377067 TCTCTCTCTAAATTCTGAAAGACAAAGAGAA-CTCAGCGTCACTttaggactggaagagacctgggcgatcgtgtggt-cacactccccattgtacccgggaggacgtgcaggcccagagggaagggagcatccgagttcacagagtccatgagtggcaCG-TGT------GGGTCCACGTTTCCCGTGCTCATTTGGCTTTGCTCTCCGGCCTCCCACGTTTATCCGGTTGTTCTGGCACATTCCTGGCACCCCGACCAGAGACC-TTGCCCCTAGTGCCAACCCCGTGCTCACAGGCCACACTCA---GGCCA----------TGAATAATGGCGACTGTCCCGCTCACGCTGGACGGCCAGCTGACGCCTCCGACCTCAGCCTTCTGACGGAGAGTCCTGGCCAGCCTAAAGAC--TCTTTTAAAATAAAGCTTACCAGTTGTTGGGtttttttccccattataaaagtaatataggcccattatagcaaatatggaaactatttcaaagtaaagagaaaaaaaaaccatcaccaatgattcaccaccgagaaaaacctgcctaaatacattgataggtttctagcctcttccccatgaatggctcgtacacacagttttaatctatcatatatcaTGGATACA
i canFam3.chr33            C 0 I 1
e mm10.chr16                65476196 1750 -  98207768 I
e calJac3.chr17               987266  20 -  74750902 I
e papAnu2.chr2                124104 1311 - 187378091 M

a score=71175.000000
s hg38.chr3_KI270935v1_alt    188745 48 +    197351 GTTTGATCTCCTCTTTACCACCTAACtttatttattta----tttatttatt
s panTro4.chr3             199826087 52 + 202329955 GTTTGATCTCCTCTTTACCACCTAACtttatttatttacttatttatttatt
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199839694 44 + 202140232 GTTCGATCTCCTCTTTACCACCTAACtttattta--------tttatttatt
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120948130 43 + 123690457 GTTCGATCTCCTCTTTACCACCTAAC-TTACtta--------tttatttatt
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       97423 48 +    111706 GTTTGGCCTCCTCGTTACCACCTAACtttatttattta----tttatttatt
i rheMac3.chrUn_JH291127   C 0 I 134
s macFas5.chr2                128362 48 + 192460366 GTTTGGCCTCCTCGTTACCACCTAACtttatttattta----tttatttatt
i macFas5.chr2             C 0 C 0
s chlSab2.chr15               477566 48 -  91754291 GTTTGGCCTCCTCGTTACCACCTAACTCtatttattta----tttatttatt
i chlSab2.chr15            C 0 C 0
e mm10.chr16                65476196 1750 -  98207768 I
e canFam3.chr33             29117458  1 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e papAnu2.chr2                124104 1311 - 187378091 M

a score=726.000000
s hg38.chr3_KI270935v1_alt    188793 2 +    197351 ca
s panTro4.chr3             199826139 2 + 202329955 ta
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199839738 2 + 202140232 ta
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120948173 2 + 123690457 ta
i nomLeu3.chr11            C 0 C 0
e rheMac3.chrUn_JH291127       97471 134 +    111706 I
e mm10.chr16                65476196 1750 -  98207768 I
e canFam3.chr33             29117458 1 +  31377067 I
e calJac3.chr17               987266 20 -  74750902 I
e chlSab2.chr15               477614 0 -  91754291 C
e macFas5.chr2                128410 0 + 192460366 C
e papAnu2.chr2                124104 1311 - 187378091 M

a score=87203.000000
s hg38.chr3_KI270935v1_alt    188795 68 +    197351 ttt--ttattatt----------------tatttatttattttgagacagagtctcgctctgtcacccaggctggagtgcagtggt
s panTro4.chr3             199826141 68 + 202329955 ttt--ttattatt----------------tatttatttattttgagacagagtctcgttctgtcacccaggctggagtgcagtggt
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199839740 68 + 202140232 tct--ttattatc----------------tatttatttattttgagacagagtctcgctctgtcacccaggctggagtgcagtggt
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120948175 70 + 123690457 ttttatttatatt----------------tatttatttattttgagacacagtctcgctctgttgcccaggctagagtgcagtggt
i nomLeu3.chr11            C 0 C 0
s macFas5.chr2                128410 57 + 192460366 -----------------------------ttattatttattttgagacggagtctggctctgtggcccaggctggagtgcggtggc
i macFas5.chr2             C 0 C 0
s chlSab2.chr15               477614 81 -  91754291 -----tatttatttatttatttattttattaattatttattttgagacggagtctcgctctgtcgcccaggctggagtgcagtgac
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               987286 67 -  74750902 ttc--tttttctt----------------ttttttttttttttgagacggagtct-gttctgtcacccaggctggagtgcagtggc
i calJac3.chr17            I 20 C 0
e rheMac3.chrUn_JH291127       97471 134 +    111706 I
e mm10.chr16                65476196 1750 -  98207768 I
e canFam3.chr33             29117458  1 +  31377067 I
e papAnu2.chr2                124104 1311 - 187378091 M

a score=338308.000000
s hg38.chr3_KI270935v1_alt    188863 160 +    197351 gcgatcttggctcactgcaacctccgcctcctgggttcacgccattctcctgcctcagcctcccgagtagctgggattataggctcgtgcccccatgcctggctaa--tttttgtattttcagtagagacggggtttcaccatgttggtcaggctggtccca
s panTro4.chr3             199826209 160 + 202329955 gcgatctcggctcactgcaacctccgcctcctgggttcatgccattctcctgcctcagcctcccgagtagctgggattataggctcgtgcccccatgcctggctaa--tttttgtattttcagtagagacggggtttcaccatgttggtcaggctagtccca
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199839808 160 + 202140232 gcgatctcggctcactgaaacctccacctcctgggttcacaccattctcctgcctcagcctcccgagtagctgggattataggctcgtgcccctgtgcctggctaa--tttttgtatttttagtggagacggggtttcaccacattgttcaggctggtccca
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120948245 160 + 123690457 gtgatcttggctcactgcaacctccgcctcctgggttcacgccattctcctgcctcagcctcctgagtagctgggactacaggctcatgcccccatgcctggctaa--tttttgtatttttggtagagacggggtttcaccatgttggttgggctggtctca
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       97605 158 +    111706 gcgatctcggctcactgcaagctccacctcccgggttcacaccattctcctgcctcagcctcccgagtagctgggactacaggcgc-cgccaccacaccgggctaa--tttttgtgttttc-gtagagatggggtttcaccatgttggtcaggctggtctca
i rheMac3.chrUn_JH291127   I 134 C 0
s macFas5.chr2                128467 158 + 192460366 gcgatctcggctcactgcaagctccacctcccgggttcacaccattctcctgcctcagcctcccgagtagctgggactacaggcgc-cgccaccacaccgggctaa--tttttgtgttttc-gtagagacggggtttcaccatgttggtcaggctggtctca
i macFas5.chr2             C 0 C 0
s chlSab2.chr15               477695 158 -  91754291 gcgatctcaactcaccacaagctccgcctcccaggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgc-cgccaccacacccggctaa--tttttgtgttttc-gtagagacaaggtttcaccatgttgatcaggctggtctca
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               987353 162 -  74750902 acgatctcagctcactgcaacctccacctcctgggttcaagtgattctcctgcctcagcctcccgagtaggtgggattacaggcacccactaccacacctggctaaattttttgtatttttagtagagatggggtttgagcatgttggtcaggctggtctcg
i calJac3.chr17            C 0 C 0
e mm10.chr16                65476196 1750 -  98207768 I
e canFam3.chr33             29117458   1 +  31377067 I
e papAnu2.chr2                124104 1311 - 187378091 M

a score=225726.000000
s hg38.chr3_KI270935v1_alt    189023 76 +    197351 aactcctgaccttgtgatccgcccgcctcagcctcccaaagtgctgggattacaggcgtgagccactgcgccgggc
s panTro4.chr3             199826369 76 + 202329955 aactcctgaccttgtgatccacccgcctcagcctcccaaagtgctgggattacaggcgtgagccactgcgccaggc
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199839968 76 + 202140232 aactcctgaccttgtgatccgcccgcctcagcctcccaaagtgctgggattacaggcgtgagccacggcgcccggc
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120948405 76 + 123690457 aactcctgaccttgtgatccacccgccttggcctcgcaaagtgctgggattacaggcgtgagccaccgcgcccggc
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       97763 76 +    111706 aaatcctgaccttgtgatccacctgccttggcctcccaaaatgctgggattacaggcgtgagccaccatgcccggc
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                128625 76 + 192460366 aactcctgaccttgtgatccacctgccttggcctcccaaaatgctgggattacaggcgtgagccaccatgcccggc
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                125420 76 - 187378091 AACTCCTGaacctgtgatccgcccgccttggcctcccaaaatgctgggattacaggcgtgagccaccatgcccggc
i papAnu2.chr2             M 1311 C 0
s chlSab2.chr15               477853 76 -  91754291 aactcctgaccttgtgatccgcccgccttggcctcccaaaatgctgggattacaggcatgagccaccatgcccggc
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               987515 75 -  74750902 aactcctgaccttgtgatctgcccgccttggcccctcaaagtgctgggattacaggtgtgagcc-ctgcgcccggc
i calJac3.chr17            C 0 C 0
e mm10.chr16                65476196 1750 -  98207768 I
e canFam3.chr33             29117458  1 +  31377067 I

a score=87733.000000
s hg38.chr3_KI270935v1_alt    189099 51 +    197351 cATGACCTAGCTTTAAACCTAAAAGTCTC-CCCAATTATTATAAA-ACTCCAT
s panTro4.chr3             199826445 51 + 202329955 cATGACCTAGCTTTAAACCTAAAAGTCTC-CCCAATTATTATAAA-ACTCCAT
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199840044 51 + 202140232 cATGACCTAGCTTTAAACCTAAATGTCTC-CCCAATTATTACAAA-ACTCCAT
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120948481 50 + 123690457 cACGACCTAGCTTT-AGCCTAAATGTCTC-CCCAGTTATTACAAA-ACTCTAT
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       97839 51 +    111706 cCCCATCTAACTTTAAACCTAAACACCTC-CCCCATTATTACAAA-ACTTCAT
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                128701 51 + 192460366 cCCCATCTAACTTTAAACCTAAACACCTC-CCCCATTATTACAAA-ACTTCAT
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                125496 51 - 187378091 ccccaccTAACTTTAAACCTAAACGTCTC-CCCCATTATTACAAA-ACTTCAT
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               477929 51 -  91754291 cCCCACCTAATTTTAAACCTAAACGTCTC-CCCCATTATTACAAA-ACTTCAT
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               987590  5 -  74750902 c------------------------------------------------TCAT
i calJac3.chr17            C 0 C 0
s canFam3.chr33             29117459 53 +  31377067 CACCACGTAAGGTTAAACCCGAGCATTTCTTCCTGTCAGTATGAACACGTCAG
i canFam3.chr33            I 1 C 0
e mm10.chr16                65476196 1750 -  98207768 I

a score=241462.000000
s hg38.chr3_KI270935v1_alt    189150 83 +    197351 TCACACATTTCTGAAGGCCACGTGATACTGCATTGGCTG----CCACCATAACTGAAC----------TAACTTGGACAC-TGGGTTATTCACGG-CGT
s panTro4.chr3             199826496 83 + 202329955 TCACACATTTCTGAAGGCCACGTGATACTGCATTGGCTA----CCACCATAACTGAAC----------TAACTTGGACAC-TGGGTTATTCACGG-CGT
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199840095 83 + 202140232 TCACACATTTCTGAAGGCCACGTGATACTGCATTGGCTG----CCACCATAACTGAAC----------TAACTTGGACAC-TGGGTTACTCTCGG-CGT
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120948531 83 + 123690457 TCACACATTTCTGAAGGCCACGTGATACGGCATTGGCTG----CCACCATAACTGAAC----------TAACTTGGACAT-TGTGTTATTCACGG-CGT
i nomLeu3.chr11            C 0 M 319
s rheMac3.chrUn_JH291127       97890 84 +    111706 TCACACATTTCCAAAGGCCACATGATACTGCATTGGCTG----CCACCATAACTGAAC----------TAACTTGGACAC-TGGGTTATTCACGGTCGT
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                128752 84 + 192460366 TCACACATTTCCAAAGGCCACGTGATACTGCATTGGCTG----CCACCATAACTGAAC----------TAACTTGGACAC-TGGGTTATTCACAGTCGT
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                125547 84 - 187378091 TCACACATTTCCGAAGGCCATGTGATACTGCATTGGCTG----CCACCATAACTGAAC----------TAACTTGGACAC-TGGGTTATTCACAGTCGT
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               477980 84 -  91754291 TCACACATTTCTGAAGGCCACGTGATACTGCATTGGCTG----CCACCATAACTGAAC----------TCACTTGGACAC-TGGGTTATTCACGGTCGT
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               987595 82 -  74750902 TCGCACTTTTCTAAAGGCCACGTGATATTGCATTGACTG----CCATCGTATCTGAAC----------TAACTCGGACAT---GGTTATTCTCGGTCAC
i calJac3.chr17            C 0 C 0
s mm10.chr16                65477946 88 -  98207768 TCACATACTTTTAAAGACAACATAATACGCCACCGAATG----CCACCATG--TGCACCCTGTGTATATAACTTGTTTAAATGAGTCAGACAGT-----
i mm10.chr16               I 1750 I 2
s canFam3.chr33             29117512 73 +  31377067 TCACGTA----CAAATTTCTCATGACATTCCATCGAGTGGACTCTACCATA--TG-------------TTGTTTAGTTAT-------GTTCACAGTTGT
i canFam3.chr33            C 0 C 0

a score=634374.000000
s hg38.chr3_KI270935v1_alt    189233 247 +    197351 CCCTGTTACAGGTAATGCCCGGATCAGAGGCTTTGTACCCAAAGTGCCTTCTGTGTTCAGGATCATTTCCTGAACCTG-GAAGCAGAGCTGGTGTGTTCTGATCGGCGGCTCTGACCCTCCTT---CTACAGTCAGAAGTCCATAAACATGAGCTTGCTC-TGTCCAGGATGTC-GGCACTTTTTTGGACACTT--GTGATCAATTAACCCTTTTAATGTTGATGGTCTAATGGCGGAAGCAGAGCTGACAATGG
s panTro4.chr3             199826579 247 + 202329955 CCCTGTTACAGGTAATGCCCGGATCAGAGGCTTTGTACCCAAAGTGACTTCTGTGTCCAGGATCATTTCCTGAACCTG-GAAGCAGAGCTGGTGTGTTCTGATCAGCGGCTCTGACCTTCCTT---CTACAGTCAGAAGTCCATGAACATGAGCTTGCTC-TGTCCAGGATGTC-GGCACTTTTTTGGACACTT--GTGGTCAATTAACCCTTTTAATGTTGATGGTCTAATGGCGGAAGCAGAGCCAACAATGG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199840178 247 + 202140232 CCCTGTTACAGGTAATGCCCAGATCAGAGGCTTTGTACCCAAAGTGCCTTCTGTGTTTAGGATCATTTCCTGAACCTG-GAAGCAGAGCTGGTGTGTTCTGATCAGCGGCTCTGACCCTCCTT---CTACAGTCAGAAGTCCGTGAACATGAGCTTGCTC-TGTCCAGGACATC-GTCACTTTTTTGGACACTT--GTGGTCAATTAACTCTTTTAATGTTGATGGTCTAATGGTAGAGGCAAAGCCGACAATGG
i ponAbe2.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       97974 251 +    111706 CCCTGTTACGGGTAATGCCCGGAGAAGAGGCTTTGTGCCCAGCGTGCCTTCTGCGTTTAGGGTCATTTCCTGAACCTG-AAAGCAGAGCTGGTGTGTTCTGATCGGCGGCTCTGACCCTCCTTCTCCTACAGTCAGAAGCCCAAGAACATGAGCTCGCTC-TGTCCAGGACGTCGGGCACTTTTTTGGATACCT--GTGGCCAATTATCTCTTTTAATGTTGATGGTCTCATGGTGGAGGCAAAGCCAACAATGG
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                128836 251 + 192460366 CCCTGTTACGGGTAATGCCCGGAGAAGAGGCTTTGTGCCCAGCGTGCCTTCTGCGTTTAGGGTCATTTCCTGAACCTG-AAAGCAGAGCTGGTGTGTTCTGATCGGCGGCTCTGACCCTCCTTCTCCTACAGTCAGAAGCCCAAGAACATGAGCTCGCTC-TGTCCAGGACGTCGGGCACTTTTTTGGATACCT--GTGGCCAATTATCTCTTTTAATGTTGATGGTCTCATGGTGGAGGCAAAGCCAACAATGG
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                125631 252 - 187378091 CCCTGTTACGGGTAATGCCCGGAGAAGAGGCTCTGTGCCCAGCATGCCTTCTGTGTTTAGGGTCATTTCCTGAACATGAAAAGCAGAGCTGGTGTGTTCTGATCGGCGGCTCTGACCCTCCTTCTCCTACAGTCAGAAGCCCAAGAACATGAGCTCGCTC-TGTCCAGGATGTCGGGCACTTTTTTGGATACCT--GTGGCCAATTGTCTCTTTTAATGTTGATGGTCTCATGGTGGAGGCAAAGCCAACAAtgg
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               478064 248 -  91754291 CCCTGTTACAGGTAATGCCGGGAGAAGAGGCTTTGTGCCCAAAGCACCTTCTGTGTTTAGGGTCATTTCCTGAACCTG-AAAGCAGAGCTGGTGTGTTCTGATCGGCGGCTCTGACCCTCCTT---CTACAGTCGGAAGCCCAAGAACATGAGCGCGCTC-TGTCCAGGATGTTGGGCACTTTTTTTGATACCT--GTGGCCAATTGTCTCTTTTAATGTTGATGGTCTCAAGGTGGAGGCAAAGCCAACAATGG
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               987677 251 -  74750902 TCCTGCTACAGGTAACGCCCAGATGAGAGGCTTTGTACCCAAAGTGCCCTCTGTGTTTACGCTCATTTCCTGGACGTG-GAAGCAGGGCAGCTGTGTTCTGATCGGCGGCTCTGACCCTCCTTATCCTACAGTCGGAAGTCCATGAACGTGAGCTCGCTC-TGTCCAGGATGTTGGGCACTTTTTTGGACACTT--GTGGTCAATTAACTCTTTTAATGTTGATGGTCTAATGGTGGAGGCAAAGCCCACAACAG
i calJac3.chr17            C 0 C 0
s mm10.chr16                65478036 223 -  98207768 GGTTGTTACAAGGCATGTAGAGATAACAGTTTCGGTACCCACAGCCCCTCCTGT----------ATTTTCTCAAGCTA-GACCCAGTCCTGGATCGCTTTGCTCCACAGG----------------TTATAGCAGGAAGTT----GACAGGGACTAGCTT-ATTACAGGATATAAAATGTTTTCTTGGACATTTAGGGGGTCCATTAGATCTGTTAATGTTGACAACCTAATGGGAGAGGCACAGCCGAGAGCAG
i mm10.chr16               I 2 C 0
s canFam3.chr33             29117585 241 +  31377067 CCTTATTACGAGTAATGTAGAATTGAGAGTCT-TGTGCCTAAAGCTCCTTGCATATCTAAGCTCTTT-----GGATTA-GGGTCAGGCTTTGTGTGTTTTTGTACACTGCTCTGACCTTCCTT---CTAGAGCAGGAAGTCAATGAACACGAATTAGCTTGTCTACAGGATGTGGGGTGCATTCTTGAACACTT--GGGGCCCATTGAGTCT-CTAATGCTGACAGACTGATGGTAGAGGTGAAACCAACAGAA-
i canFam3.chr33            C 0 C 0
e nomLeu3.chr11            120948614 319 + 123690457 M

a score=890.000000
s hg38.chr3_KI270935v1_alt    189480 1 +    197351 g
s panTro4.chr3             199826826 1 + 202329955 g
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199840425 1 + 202140232 a
i ponAbe2.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       98225 1 +    111706 A
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                129087 1 + 192460366 A
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                125883 1 - 187378091 a
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               478312 1 -  91754291 A
i chlSab2.chr15            C 0 C 0
s mm10.chr16                65478259 1 -  98207768 G
i mm10.chr16               C 0 I 14
s canFam3.chr33             29117826 1 +  31377067 G
i canFam3.chr33            C 0 C 0
e calJac3.chr17               987928 0 -  74750902 C
e nomLeu3.chr11            120948614 319 + 123690457 M

a score=163596.000000
s hg38.chr3_KI270935v1_alt    189481 93 +    197351 gccgggcgc---tgtggctca---------cgcctgtaatcccagcactttgggaggccgaggcgggcagatcacctgaggtcgggagttcaagaccagc--ctgac---
s panTro4.chr3             199826827 93 + 202329955 gccaggcgc---tgtggctca---------cgcctgtaatcccagcactttgggaggccgaggcgggcagatcacctgaggtcgggagttcaagaccagc--ctgac---
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199840426 93 + 202140232 gccgggtgc---ggtggctca---------cgcctgtaatcccagcactttgggaggccgaggcgggcagatcacctgaggtcaggagttcaagaccagc--ctgac---
i ponAbe2.chr3             C 0 C 0
s rheMac3.chrUn_JH291127       98226 93 +    111706 gccgggcac---ggtggctca---------cgcctgtaatcccagcactttgggaggccgaagcaggaggatcacctgaggtcgggggttcaagaccagc--ctgac---
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                129088 93 + 192460366 gccgggcat---ggtggctca---------cgcctgtaatcccagcactttgggaggccgaagcaggaggatcacctgagatcgggagttcaagaccagc--ctgac---
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                125884 93 - 187378091 gctgggcgc---agtggctca---------tgcctgtaatcccagcactttgggaggccgaggtgggaggatcacctgaggtcgggagttcaagaccagc--ctggc---
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               478313 93 -  91754291 gccgggtgc---ggtggctca---------cgcctgtaatcccagcactttgggaggccgaggtgggaggatcacctgaggtcgggagttcaagaccagc--ctgac---
i chlSab2.chr15            C 0 C 0
s canFam3.chr33             29117827 92 +  31377067 GAgggacacttgggtggctcagtggatgagcgtctgc----------ctttg---gcccagggcgtgat-----cctggagacccaggatcgagtcccacatctggctcc
i canFam3.chr33            C 0 C 0
e mm10.chr16                65478260 14 -  98207768 I
e calJac3.chr17               987928  0 -  74750902 C
e nomLeu3.chr11            120948614 319 + 123690457 M

a score=450131.000000
s hg38.chr3_KI270935v1_alt    189574 209 +    197351 aaacatggagaaaccccatctctactaaaaat--acaaacttagtagaaatgttggtggtgtgcacctgtagtcccagctacctgggaggctgagggaggagaatcacttgaacctgggaggcggaggttgcagtgagctgagatcacaccactgcactccagcctgggcaacaagagcgaaactccgtcttgaaataataaaataaaata
s panTro4.chr3             199826920 209 + 202329955 aaacatggagaaaccccatctctactaaaaat--acaaacttagtagaaatgttggtggtgggcacctgtagtcccagctacttgggaggctgagggaggagaatcacttgaacctgggaggcggaggttgcagtgagctgagatcataccactgcactccagtctgggcaacaagagcgaaactccgtcttgaaaaaataaaataaaata
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199840519 209 + 202140232 aaacatggagaaaccccatctctactaaaaat--acaaacttagtagaaatgttggtggtgtgcacctgtagtcccagctacttgggaggctgagggaggagaatcgcttgaacctgggaggcagaagttgcagtgagctgagatcacaccactgcactccagcctgggcaacaagagtgaaactccgtctcaaaaaaataaaacaaaata
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120948935 211 + 123690457 Aaacatggagaaaccccatctctactaaaaataaaaaaatttagtagaaatggtggtggtgtgcacctgtagtcccagctacttgggaggctgagggaggagaatcgcttgaacctgggaggcggaggttgcggtgagccgagatcgcaccactgcactccagcctgggcaacaagagcgaaactccgtctcaaaaaaataaaataaaata
i nomLeu3.chr11            M 319 C 0
s rheMac3.chrUn_JH291127       98319 206 +    111706 caacatggagaaaccccgtctctactaaaaat--acaaacttagtagaaa---tcgtggcaggcgcttgtaatcccagctactcaggaggctgaggcaggagaatcacttgaactcgggaggcagaggttgtagtgagctgagatcacgctactgcactccagcctgcgcaacaagagagaaactccatcttaaaaaaataaaataaaata
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                129181 206 + 192460366 caacatggagaaaccccgtctctactaaaaat--acaaacttagtagaaa---ttgtggcaggcgcctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaactcgggaggcagaggttgtagtgagctgagatcacgctactgcactccagcctgcgcaacaagagagaaactccatcttaaaaaaataaaataaaata
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                125977 206 - 187378091 caacatggagaaaccccgtctctactaaaaat--acaaacttagtagaaa---tggtggtgggcgcctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaacccgggaggcagaggttgcagtgagctgagatcacgctactgcactccagcctgagcaacaagagagaaactccatcttaaaaaaataaaataaaata
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               478406 206 -  91754291 caacatggagaaaccccgtctctactaaaaat--acaaacttagtagaaa---tggtggtgggcgcctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacttgggaggcagaggtagtagtgagctgagatcacgctactgcactccagcctgcgcaacaagagagaaactccatcttaaaaaaataaaataaaata
i chlSab2.chr15            C 0 C 0
s canFam3.chr33             29117919  90 +  31377067 ctgcatggag----cctgcttctccc-----t------------------------------ctgcctgt-gtctctgcctct------------------------------------------------------------------------cactc----atgaataaataaataaaatct-----ttaaaaaaaaAAAAAAAAAGA
i canFam3.chr33            C 0 C 0
e mm10.chr16                65478260  14 -  98207768 I
e calJac3.chr17               987928   0 -  74750902 C

a score=162723.000000
s hg38.chr3_KI270935v1_alt    189783 47 +    197351 ----aataga-----ataaTTACTCCGGAAGCCTAAAAATGATGGGTGGATTAAAG
s panTro4.chr3             199827129 47 + 202329955 ----aaTAGG-----ATAATTACTCCGGAAGCCTAAAAATGATGGGTGGATTAAAG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199840728 47 + 202140232 ----aataga-----ataaTTACTCAGGAAGCCTAAAAATGATGGGTGGATTAAAG
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120949146 47 + 123690457 ----aataga-----ataaTTACTCAGGAAGCCTAAAAATGATGGGTGGATTAAAG
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       98525 47 +    111706 ----aataga-----ataaCTACTCAGGAGGCCTAAAAATGACAGGTGGATTAAGG
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                129387 47 + 192460366 ----aataga-----ataaCTACTCAGGAGGCCTAAAAATGACAGGTGGATTAAGG
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                126183 47 - 187378091 ----aataga-----ataattacTCAGGAGGCCTAAAAATGACAGGTGGATTAAGG
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               478612 47 -  91754291 ----aataga-----ataaTTACTCAGGAGGCCTAAAAATGACAGGTGGATTAAGG
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               987928 47 -  74750902 ----AACAGA-----ATAATTACTCAGGTGGCCTAAAAATGAGGGGTGGATTAAGG
i calJac3.chr17            C 0 C 0
s canFam3.chr33             29118009 56 +  31377067 AACCAACAGAAGGAGATAATGACTCAGGTGAGCTAAAAATGATGGGTGGATTAAGG
i canFam3.chr33            C 0 C 0
e mm10.chr16                65478260 14 -  98207768 I

a score=79125.000000
s hg38.chr3_KI270935v1_alt    189830 22 +    197351 ACTCTGCAGGTGGGTGGGGAAA-
s panTro4.chr3             199827176 22 + 202329955 ACTCTGCAGGTGGGTGGGGAAA-
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199840775 21 + 202140232 ACTCTGCAGGT-GGTTGGGAAA-
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120949193 22 + 123690457 ACTCTGCAGGTGGGTGGGGAAA-
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       98572 22 +    111706 ACTCTGCAGGTGGGTGGGGAAA-
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                129434 22 + 192460366 ACTCTGCAGGTGGGTGGGGAAA-
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                126230 22 - 187378091 ACTCTGCAGGTGGGTGGGGAAA-
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               478659 22 -  91754291 ACTCTGCAGGTGGGTGGGGAAA-
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               987975 22 -  74750902 ATCCTGCAGGTGGGTGGGAAAA-
i calJac3.chr17            C 0 I 493
s mm10.chr16                65478274 22 -  98207768 ACTTTGCACGGGGTTAGCAAGA-
i mm10.chr16               I 14 I 1
s canFam3.chr33             29118065 21 +  31377067 --ACTGCAGGTGGGTTGAGGAAC
i canFam3.chr33            C 0 C 0

a score=1670961.000000
s hg38.chr3_KI270935v1_alt    189852 689 +    197351 AGGTGGAGAACCCCTTCCCATCCCAGCTCTTTCCTGGGTGAGCTCCCAGCTATGATCCAGGACCAACTGCCAGGCTTCTCATTTTGATACTGGACACT--ATGCTTAGCCCA-GCGACTGTCCTGAAGAAAGTGATCCAGACAAAATTTGAA-----CAGAGAA----------------AGAAGGCAGTGAGATTAGCCC---------ATCAGGCTGGAAAGTGAGACTTGTTCC-TTGTTCCCCTTGCTCCCTGGGGAGAGGAGGCACCAGCTGAAGC--TGGCCAGGG----GACAGAAGAGGGG--------------TCTGGTGAGCTCTGCTCCCCGGTGTGCA--GGGGAGGCAGAATGCAGGCAGAGGAGCAGCCTGACAATGCGACGGACACATTACCACGTGGCCCTATGTGCC------------------------------------------------------CTCACGGGGTCACGAGCTAGTGGAATCTAAACATGGAGAGAGGATCA-TTTA-------GCAACA--------GGGTCTGTGGCCCTGG-GC-ATGACTGTGTGCCAGGCAACAGACAAGCCTCAGTGAGGGCCATCCAGGAAGGCCTCTGCCTTAGTGCTc-----------------------acaaactcggtggcttcaaacaaacaggaatttattctttcacagtt-tggaacccagaa-gtccaaaatcaaggcgtgggcagaaccacactccctccggaggttctggggtggagccctcctggcctctctcctggtttccaggggtggctggccattctccgcattcccgggctg
s panTro4.chr3             199827198 700 + 202329955 AGGTGGAGACCCCCTTCCCATCCCAGCTCTCTCCTGGGTGAGCTCCCAGCCATGATCCAGGACCAACTGCCAGGCTTCTCATTTTGATACTGGACACT--ATGCTTAGCCTA-GTGACTATCCTAAAGAAAGTGATCCAGACAAAATTTGAA-----CAGAGAA----------------AGAAGGCAGTGAGATTAGTCC---------ATCAGGCTGGAAAGTGAGACTTGTTCC-TTGTTCCCCTTGCTCCCTGGGGAGAGGAGCCACCAGCTGAAGC--TGGCCAGGG----GACAGAAGAGGGG--------------TCTGGTGAGCTCTGCTCCCCGGTGTGCA--GGGGAGACAGAATGCAGGCAGAGGAGCAGCCTGGCAATGCGACTGACACATTACCACGTGGCCCTGTGTGCCGGGC-------------------------------------------CCACACGCTCACAGGGTCACGAGCTAGTGGAATCTAAACATGGAGAGAGGATCA-TTTA-------GCAACA--------GGGTCTGTGGCCCTGG-GC-ATGACTGTGTGCCGGGCAACAGACAAGCCTCAGTGAGGGCCATCCAGGAAGGCCTCTGCCTTAGTGCTc-----------------------acaaacttggtggcttcaaacaaacaggaatttattcttttacagtt-tggaacccagga-gtccaaaatcaaggcgtgggcaaaaccacactctctccagaggttcttaggtggagccctcctggcctctctcctggtttccaggggtggctggccattctccgcattcccaggctg
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199840796 701 + 202140232 AGGTGGAGACCCCCTCCCCATCCCAGCTCTTTCCTGGGTGAGCTCCCAGCCACGATCCAGGACCAACTGCCAGGCCTCTCATTTTGATACTGGACACT--ATGCTTAGCCCAGGTGACTATCCTGAAGAAAGTGATCCAGACAAAATTTGAA-----AAGAGAA----------------AAAAGGGAGTGAGATTAGCCC---------ATCAGGCTGGAAAGTGAGACTTGTTCC-TTAGTCCCCTTGCTCCCTGGGGAGAGGAGCCACCAGCTGAAGC--TGGCCAGGG----GACAGAAGAGGGG--------------TCTGATGAGCTCTGCTCCCCAGTGTGCA--CGGGCGGCAGAATGCAGGCAGAGGAGCAGCCCGGCAATG-GACAGCCACATTCTCACGTGGTCCTGTGTGCCGGGC-------------------------------------------CCACACCCTCACGGGGTCACGAGCTAGTGGAATCTACACATGGAAGGAGGAGCATTTTA-------GCAACA--------GGGTCTGTGGCCCTGG-GC-ATGACTGTGTGCCGGGCAACAGACAAGAATCAGTGAGGGCCATCCAGGAAGGCCTCTGCCTTAGTGTTc-----------------------acaaacttggtggcttcaaacaaacaggaatttattcttttacagtt-tggaacccagaa-gtccaaaatcaaggcatgggcagaaccacactccctccggaggttctggggtggagccgtcctggcctcgctcctggttttcaggggtggctggccattctccacattcccgggctg
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120949215 695 + 123690457 AGGTGGAGA-CCCCTCCCCATCCCAGCTCTTTCTTCGGTGAGCTCCCAGCCATGATCCAGGACCAACTGCCAGGCCTCTCATTTTGATACTGGAAACT--ATGCTTAGCCCAGGTGACTATCCTAAAGAAAGTGATCCAGACAAAATTTGAA-----AAGAGAA----------------AAAAGGGAGGGAGATTAGCCC---------ATCAGGCTGGAAAGTGAGACTTGCTCCTTTGTTCCCCTTGCTCCCTGGTGAGAGGAGCCACCAGCTGAAGC--TGGCCAGGG----GACAGAAGAGGGG--------------TCTGGTGAGCTCTGCTCCCCCGTGTGCA--GGAGAGACAGAATGCAGGGAGAGGGGCAGCCTGGCAATGCGACGGCCGCATTACCACGTGGCCCTGTGTGCTGGGC-------------------------------------------CCACGCCCTCATGGGGTCACGAGCTAGTGGAATCTAGACATGGAGGGAGGAGCA-TTTA-------GCAACA--------GGGTCTGTGGCCCTGG-GC-ATGACTGCATGCTGGGCA----ACAAGCCTCAGTGAGGGCCATCCAGGAAGGCCTCAGCCTTAGTGTTc-----------------------acaaacttggtgacttcaaacaaacaggaatttattctttcacagtt-tggaacccagaa-gtccaaaatcaaggcgtgggcagaaccacactccctccgggggttct--ggtggagcccccctggcctctctcctggtttccaggggcggctggccgctctccacattcccgggctg
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       98594 672 +    111706 AGGTGGAGGCCCCCTCCCCATCCCAGCTTGTTCCCGGGTGAGCTCCCAGCCATGAAATAGGACCAATTGTCAGCCCTCTCATTTTTATCCTAGAAACT---------------GTGACTATCCTACAGAAAGTGATCCAGACAAAATTTGAA-----AAGAGAA----------------AAAAGGGAGTGAGATTAGCCC---------ATCAGGCTGGAAAGTGAGACTTGCTCC-TTGTTCCCCTTGCTCCCTGGTGAGGGGAGTCACCAGCTGAAGC--CGGCCAGGG----GACAGAAGAGGAG--------------GCTGGTGAGCCC------------------GGGGAGGCAGCATGCAGGCAGAGGGGCAGTCTGGCAACGTGACGGCCACATTACCACGGGGCCCTGTGTGCCGGGC-------------------------------------------CCATGCCCTCACAGGGTCACGAGCTAGTGGAATCTAGACATGGAGGGAGGAGCA-TTTA-------GCAACA--------GGGTCTGTGGTCCCGG-GC-ATGGGTGTGTGCTGGGCAACAGGCGAGCCTCAGTGAGGGCCACCCAGGAAGGCCTCCGTCTTAGTGTcc-----------------------acaaacttggcagcttcaaacaaaccggaatttattctttcacagtt-tggaaccgagaa-gtccaaaatcaaggcatgggcagaaccacactctgtccggaggttctggggtggagccgtcctggcctgtctcctggtttccaggggtggctggccatgctccgcgttcccgggctg
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                129456 672 + 192460366 AGGTGGAGGCCCCCTCCCCATCCCAGCTTGTTCCTGGGTGAGCTCCCAGCCATGAAACAGGACCAATTGTCAGCCCTCTCATTTTTATACTAGAAACT---------------GTGACTATCCTACAGAAAGTGATCCAGACAAAATTTGAA-----AAGAGAA----------------AAAAGGGAGTGAGATTAGCCC---------ATCAGGCTGGAAAGTGAGACTTGCTCC-TTGTTCCCCTTGCTCCCTGGTGAGGGGAGTCACCAGCTGAAGC--CGGCCAGGG----GACAGAAGAGGAG--------------GCTGGTGAGCCC------------------GGGGAGGCAGCATGCAGGCAGAGGGGCAGTCTGGCAACGTGACGGCCACATTACCACGGGGCCCTGTGTGCCGGGC-------------------------------------------CCATGCCCTCACAGGGTCACGAGCTAGTGGAATCTAGACATGGAGGGAGGAGCA-TTTA-------GCAACA--------GGGTCTGTGGTCCCGG-GC-ATGGGTGTGTGCTGGGCAACAGGCGAGCCTCAGTGAGGGCCACCCGGGAAGGCCTCCGTCTTAGTGTcc-----------------------acaaacttggcagcttcaaacaaaccggaatttattctttcacagtt-tggaaccgagaa-gtccaaaatcaaggcatgggcagaaccacactccgtccggaggttctggggtggagccgtcctggcctgtctcctggtttccaggggtggctggccatgctccgcattcccgggctg
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                126252 672 - 187378091 AGGTGGAGGCCCCCTCCCCATCCCAGCTCGTTCCTGGGTGAGCTCCCAGCCATGAAACAGGACCAGTTGTCAGGCCTCTCATTTTGATACTAGAAACC---------------GTGACTATCCTACAGAAAGTGATCCAGAcaatatttgaa-----aagagaa----------------aaaagggagtGAGATTAGCCC---------ATCAGGTTGGAAAGTGAGACTTGCTCC-TTGTTCCCCTTGCTCCCTGGCGAGAGGAGTCACCAGCTGAAGC--TGGCCAGGG----GACAGAAGAGGAG--------------GCTGGTGAGCCC------------------GGGGAGGCAGCATGCAGGCAGAGGGTCAGTCTGGCGATGTGACGGCCACATTACCATGGGGCCCTGTGTGCCGGGC-------------------------------------------CCATGCCCTCACAGGGTCACGAGCTAGTGGAATCTAGACATGGAGGGAGGAGCA-TTTA-------GCAACA--------GGGTCTGTGGTCCCGG-GC-ATGGGTGTGTGCTGGGCAACAGGCAAGCCTCAGTGAGGGCCATCCAGGAAGGCCTCTGTCTTAGTgtcc-----------------------acaaacttggtggcttcaaACAAACCggaatttattctttcacagtt-tgGAACcgagaa-gtccaaaatcaaggcatggGCAGAACCACACTCCACGCGGAGGTTCCGGGGTGGAGTCGTCCTGGCCTGTCTCCTGGTTTCCAGGGGTGCCTGGCCATGCTCCGCATTCCCGGGCTG
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               478681 671 -  91754291 AGGCGGAGGCCCCCTCCCCATCCCAGCTCGTTCCTGGGTGAGTTCCCAGCCATGAAACAGGACCAATTGTCAGGCCTCTCATTTTGATACTAGAAGCT---------------GTGACTATCCTACAGAAAGTGATCCAGACAAAATTTGAA-----AAGAGAA----------------AAAAGGGAGTGAGATTAGCCC---------ATCGGGCTGGAAAGCGAGACTTGCTCC-TTGTTCCCCTTGCTCCCTGGTGAGGGGAGTCACCAGCTGAAGC--CGGCCAGGG----GACAGAGGAGGAG--------------GCTGGTGAGCCC------------------GGGAAGGCAGCATGCAGGCAGAGGGGCAGTGTGGCGATGTGACGGCCACATTACCACGGGGCCCTGTGTGCCAGGC-------------------------------------------CCATGCCCTCACAGGGTCACGAGCTAGCGGAATCTAGACATGGAGGGAGGAGCA-TTTA-------GCAACA--------GGGTCTGTGGTCCCGG-GC-ATGGGTGTGTGCTGGGCAACTGGCAAGCCTCAGTGAGGGCCACCCAGAAAGGCCTCTGCCTTAGTGTcc-----------------------acacacttggtggcttcaaacaaagcggaatttattctttcacagtt-tggaacccagaa-gtccaagatcaaggcacgggcagaaccacactccgtccgg-ggttctggggtggagccgtcctggcctgtctcctggtttccaggggtggctggccatgctccacattccggggctg
i chlSab2.chr15            C 0 C 0
s mm10.chr16                65478297 659 -  98207768 AGGTGGAG--------TCCACCAAGAGTCCTTCCTGGGTGAACTTTCAGCCATAATGCATGACCAAATACCAGGCATCTCGACTGAATACCTTAGCCTCGATCCTTAGTCAG-GTGAAGATTCTAGAGAAAATGATGCAAAAGTAATCTGAA-----GAGGGAACAAGGAGACATAGAGCAGAAGGCAATGGAAGTGGTCT---------GACA-GCTAGGGAGTGAGGCTTGCTCT-TC----------CTCCACACAGAGA-GACAGACTGGCTGACCCAGAGGCCAAAGCGACAGCAGAAGCAGAG--------------TCAGGGGGTCTT------AGCAAGTACA--TTAGAAGCAGAACTTAGACAGAGG-TCAGCCTGGCAACCCAACAGCCG-GTAACTGCCCAGCCCCAGGTCCCAGGCACCATGTCTAGTGCAGAGACTGATGAAAGGGACAAGAAGAAGACCTTGCATTGCCAGGGTCACTGTCTAGGGGAAGCTAGGAAAGAAGGGAGGGACA-TGTATGGAGAGGCCTCT--------GGGTCTGTGACTTTAATGA-GTGCTTGTTTGCTGAGCA-TGGAGGAAGATCAATAAAGGTGGGTCA--AAGGCCTCTGTATGAGCTTCCC----------------CGTGTAacagatttggcagcttcaagc-cacagaaagctgttctctcacagtt-aggggaacataaggtcaaaaatcagggtg-------------------------------------------------------------------------------------------tcccaggcc-
i mm10.chr16               I 1 C 0
s canFam3.chr33             29118086 786 +  31377067 AGGTGGAG-------TCCCTTAAGGAGGCCTTCCTGGGTGGGCTCCCAGCCCTGATCCATGACCAACTGCCACACTTCTCATTTGAATATCTGAGGTTTGATACATAGCCCAGGAGGCGATTCTAGGGAAAGTGATTCAGAAGGAATTGGAATTAGCCAGGGGG---------TCAAAGCAAAAGAAAATGGAAATGGTCCAGAGACACAATCTAGCTG---AGCGAGGTCCGTGCT-CT-------------CCTAGGGCAATGAACTACGTAACACGGA--AGGCCACGC----GGAGCAAGAGGAGCAGAACCAGGGAGCCCCAGCAAGCCCTGCTCCCCAGCATACAATGGAGCAACAGAACCCGGACGGAGCACTAGCCTGGCCCtccaacagccgatttaccctgtgagcttgtgtgccgggcactgtgcctggcccaggggatgctgagatgagcaaggccctgcccctgtcctcacacagtcacattctagACGGATCTAGACCTGGGTGGAGGGGCA-TTTG-------GGGGCAGGCCCTCTGGGTCTGTGGCCCTGA-GCTCTGGGGGGGAGTTGGGCAATGGAGGAAGCTCACTGAGGGCCATCGAAGAGGATCTCAgtatcagtgtcctacggctgctgtaacaaagcaccacaaactaggtggcttaaagc-aacacagttgtattctctcacaattctggaggccagaa-gtcctaaatcaaagcgctgatgggaacatcctccctccaaatctctaggggagaatccttctttgcct--cttctagct---ggtggttgctgg-catcctcggtgttccttagcct
i canFam3.chr33            C 0 C 0
e calJac3.chr17               987997 493 -  74750902 I

a score=1671783.000000
s hg38.chr3_KI270935v1_alt    190541 549 +    197351 gcagccgtgtccctccagcctctg-cctccatcgtgttgtgtggc--catcttct---cccctgtgcgtgtgtctctgtttcctcttctcataaggacac------cagtcactggattaggctctgcctcaattcggcatgacctcagtttaacttaactaataacctc----tgcaaagaccctatttccaaataaggtcaca------ttctgagtgacatgaattttg-ggggacacgtactcaccccagtacaACCTCCTTGAAGAAAATTTGGGGCAGGGTAGGTGTATGGGTCATGACA-------------ATAGATGAT----------------TCTTGCCGAATGATGACCTATTTGG---GAAGACCAGCAGGTGTGCCCACATCACCCTGGGCTGGCTCTGGAAATCCCCCAAATCTCGGCTCTTGTCACCACTGAGTCA-GGAGCCAGGCGGCATGACCAAGGG-ACCAGCTTGACT--ATTCCTCGATCTAACTTCTT-GGATCATGAGGCCAGGCAGATGGCAGCCCCAGGAGCCCTCAGCTGTA----GCTCATCAGGCCCGTGCTGAGACCACCCCCT----------CCCCTGCCCAGGAGGGC
s panTro4.chr3             199827898 549 + 202329955 gcagctgtgtccctccagcctctg-cctccatcgtgttgtgtggc--catcttct---cccctgtgcatgtgtctctgtttcctcttctcataaggacac------cagtcactggattaggctctgcctcaattcggcatgacctcagtttaacttaactaataacctc----tgcaaagaccctatttccaaataaggtcaca------ttctgagtgacatgaattttg-ggggacacgtactcaccccagtacaACCTCCTTGAAGAAAATTTGGGGCAGGGTAGGTGTATGGGTCATGACA-------------ATAGAAGAT----------------TCTTGCCGAATGATGACCTATTTGG---GAAGACCAGCAGGTGTGCCCACATCACCCTGGGCTGGCTCTGGAAATCCCCCAAATCTCGGCTCTTGTCACCACTGAGTCA-GGAGCCAGGCGGCATGACCAAGGG-ACCAGCTTGACT--GTTCCTCGATCTAACTTCTT-GGGTCATGAGGCCAGGCAGATGGCAGCCCCAGGAGCCCCCAGCTGTA----GCTCATCAGGCCCATGCTGAGACCACCCCCT----------CCCCTGCCCAGGAGGGC
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199841497 549 + 202140232 gcagccgtgtccctccagcctctg-cctccatcgtgttgcgtggc--catcttct---cccctgtgtgtgtgtctctgtttcctcttctcataaggacac------cagtcactggattaggctttgcctcaattcggcatgacctcagtttaacttaactaataacctc----tgcaaagaccctatttccaaataaggtcatg------ttctgagtgacatgaattttg-ggggacatgcattcaccccaGTACAACCTCCTTGAAGACAATTTGGGGCAGGGTAGGTGTATGGGACATGACA-------------ATAGATGAT----------------TCTTGCCGAATGATGACCTATTTGG---GAAGACCAGCAGGTGTGCCCACGTCACCCTGGGCTGGCTCTGGAAATCCCCCAAATCTCGGCTCTTGTCACCACTGCGTCA-GGAGCCAGGCTGCGTGACCAAGGG-ACCAGCTTGACT--ATCCCTCGATCTAACTTCTT-GGGTCACGAGGCCGGGCAGATGGCAGCCCCAGGAGCCCCCAGCTGTA----GCTCATCAGGCCCATGCTGAGACCACCCCCT----------CCCCTGCCCAGGAGGGC
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120949910 548 + 123690457 gcagccgtgtccctccagcctctg-cctccatcgtgctgcgtggc--cgtcgtct---cccccgtgtgtgtgtctctgtttcctcttctcataaggacac------cagtcactggatcaggctctgcctcaattcggcatgacctcagtttaacttaactaataacctc----tgcaaagaccctatttccaaataaggtcacg------ttctgagtgacatgaatttag-ggggacacgtattcaccccaGTACGACCTCCTTGAAGACAATTTGGGACAGGGTAGGTGTATGGGTCATGATA-------------ATGGATGAT----------------TCTTGCCGAATGATGACCTATTTGG---GAAGACCAGCAGGTGTGCCCACGTCACCCTGGGCTGGCTCTGGAAATCCCCCAAATCGT-GCTCTTGTCAGCACTGAGTCC-AGGGCCAGGCTGCGTGACCAAGCG-ACCAGCTTCACT--ATCCCTTGATCTAACTTCTT-GGGTCATGAGGCCGGGCAGATGGCAGCCCCGGGAGCCCCCAGCTGTA----GCTCATCAGGCCCATGCTGAGACCACCCCCT----------CCCCTGCCCAGGAGGGC
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       99266 541 +    111706 gcagccgtgtctctgcagcctctg-cctccatcgtgtcgcgaggccgcgtcttct---cccctgtgcgtgtg--tctgttttctcttctcataaggacac------cagtcactggattaggctctgcctcaactgggcatgacctcagtttaacttaactaataatctc----tgcaaagaccctacttccaaataaggtcaca------ttctgagtgacatgaattttg-ggggacacgtattcaccccaGTACAACCTCCCTGAAGAAAATTTGGGGCAGGGCAGGTGTGTGGGTCATTACA-------------ATAGATTAT----------------TCTTGCCGAATAATGACCTATTTGG---GAAGACCAGCAGGTGTGCCCATGTCACCCTGGGCTGGCTCTGGAAATCCCCCAAATCTCGGCTCTTGTCACCACTGAGTCA-GGAGCCAGGCTGCGTGACTGAGCG-ATCAGCTTCGCT--ATCCCTCGCTCTAACTTCCT-GGGTCACGAGG-----------------TCAGGAGCCCCCAGCTGTA----GCTCGTCAAGCCCATGTTGAGATCACCCCACCCCCCCACCCCCCCCGCCCAGGAGGG-
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                130128 537 + 192460366 gcagccgtgtctctgcagcctctg-cctccatcgtgtcgcgaggc--cgtcttct---cccctgtgcgtgtg--tctgttttctcttctcataaggacac------cagtcactggattaggctctgcctcaactgggcatgacctcagtttaacttaactaataatctc----tgcaaagaccctacttccaaataaggtcaca------ttctgagtgacatgaattttg-ggggacacgtattcaccccaGTACAACCTCCCTGAAGAAAATTTGGGGCAGGGCCGGTGTGTGGGTCATTACA-------------ATAGATTAT----------------TCTTGCCGAATAATGACCTATTTGG---GAAGACCAGCAGGTGTGCCCATGTCACCCCGGGCTGGCTCTGGAAATCCCCCAAATCTCGGCTCTTGTCACCACTGAGTCA-GGAGCCAGGCTGCGTGACTGAGCG-ATCAGCTTCGCT--ATCCCTCGCTCTAACTTCCT-GGGTCACGAGG-----------------TCAGGAGCCCCCAGCTGTA----GCTCGTCAAGCCCATGTTGAGATCACCCCACCCCCCCA---CCCCCGCCCAGGAGGGC
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                126924 529 - 187378091 GCAGCCGtgtctctgcagcctctg-cctccatcgTGTCGCGAGGC--CATCTTCT---CCCCTGTGCGtgtg--tctgttttctcttctcataaggacac------cagtcactggATTAGGCTCTGCCTCAACGGGGCATGACCTCAGTTTAACTTAACTAGTAATCTC----TGCAAAGACcctacttccaaataaggtcacg------ttctgagtgacatgaattttg-ggggacacgtATTCACCCCAGTACAACCTCCCTGAAGAAAATTTGGGGCAGGGCAGGTGTACGGGTCATTACA-------------ATAGATTAT----------------TCTTGCCGAATAATGACCTATTTGG---GAAGACCAGCAGGTGTGCCCATGTCACCCTGGGCTGGCTCTGGAAATCCCCCAGATCTCGGCTCTTGTCACCACTGAGTCA-GGAGCCAGGCTGCGTGACTGAGCG-ATCAGCTTCGCT--ATCCCTCGCTCTAACTTcct-gggtcacgagg-----------------tcaggagcccCCAGCTGTA----GCTCGTCAAGCCCATGTTAAGACCACCGcc-----------cccccGCCCAGGAGGGC
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               479352 530 -  91754291 gcagccgtgtctgtgcagcctctg-cctccatcgtgttgcgaggc--catcttct---cccctgtgcgtgtc--tctgttttctcttctcataaggacac------cagtcactggattaggctctgcctcaactggggatgacctcagtttaacttaactaataatctc----tgcaaagaccctacttcaaaataaggtcatg------ttctgagtgacatgaattttg-ggggacacatattcaccccagtacaACCTCCCTGAAGAAAATTTGGGGCAGGGTAGGTGTACGGGTCATTACA-------------GTAGATTAT----------------TCTTGCCTAAAAATGACCTATTTGG---GAAGACCAGCAGGTGTGCCCATGTCACCCTGGGCTGGCTCTGGAAATCCCCCAAATCTCGGCTCTTGTCACCACTGAGTCC-GGAGCCAGGCTGCGTGACCGAGCC-ATCAGCTTGGCT--ATCCCTCGCTCTAACTTCCT-GGGTCACGAGG-----------------TCAGGAGCCCCCAGCTGTA----GCGCATCAGGCCCATGTTGAGACCACCCCCT----------CCCCTGCCCAGGAGGGC
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               988490 492 -  74750902 GTGGCCGTCTCC------Cctctg-cctccatcatgttttgtggc--ca---tct---cccctgtgcgagtgtctccgtcttctctt---ataaggatgc------cagtcaccggattaggctctg----------------cctcagtttaactgaactaataacctc-----------------------------ATCATG-------TCTGAGGGACATGAATCTTG-GGGGACAATTATTCACCCCAGCACAACCTCCTTGAAGAAAATTTGGGGAAGGGTAGGTGTATGGGTCATTACA-------------ATAGATGCT----------------TCTTGCCGAATGATGACCCATTTGA---GAAAACCAGCAGGTGTACCCATGTCACCCTGGGCTGGC-CTGGAAATGCCCCAAATCTCTGCTCTCGTCACCACTGAGTCA-GGAGCCAGGCTGTGTGACCAAGGG-ACCAGCTTGACT--ATCCCTCAATCTAACTCCCT-AGGTCATGAAGCCGGGCAGATGGCAGCCTCAGGAGCCCCCAGCTGTG----CCTCATCAGGCCCATGTTAAGACCACTGCT-----------CCCCTGCCTA-GAGGGC
i calJac3.chr17            I 493 C 0
s mm10.chr16                65478956 536 -  98207768 -catctttgcccctatagcttttg----------ggacatgcagc--agtccttgatactcctacacttacccctctgatctcttttttcactgtcacatgtcacatggtcactgggccagggtccaccctcatc--------tatcagtctgacataaccaataacatc----ttctaagac---atttccaaataaatccaca------ttctgag--------actcta-ggTGACATTCTGGGAGTCTAGTACAAACCCCTTAAATA-AACTTGGGGAAGAATAAATGTTTGGGTCATTACATGGAAGTTGTGGGAGGGATCATTTGCCTACTACAGTGCTCTAGCTGATTAGTGATCTTACAGGAGTGCATGCCAGCAAGTG-ACTCATTTCATCCTGGGCTGGTCCTGGAAAT------------------------CAAGGAGTCA-CAAGCCAGGCTGGGTACCCAAGAGAAACAGCCAGTTA--ATTCCTAACCAGATTTCCTT-AGGGCTTGAAATCTGGCAGGCAGCTGTTCTGGAA--TTCTAGCCTTACAGGCCTCATCA-GCCCATGCTGAGAGC-CCCCAT----------CCTGTGTCCAAGAGGGC
i mm10.chr16               C 0 I 494
s canFam3.chr33             29118872 500 +  31377067 --------------gcagctttcgtcctcc---------catggc--catcttct---cctccaggcatctgtgtctgttcactcttcttataaggacac------gagtcattggagtagagcccatgccaagccagcgtgatctccatttaacacaactgatcatatcttcattcaaagaatctgtctctaggtaaggtcacaacgaggttcttggtgacatggattttgcggggacacttatccaacccaGTATAACCGC--TGAAGAAAGTTTGGGA-AGGGTAAATGTACGAGTCGTTCCA-------------ATAGATGAC----------------CTCCAC----------------AGG---GAGGCCCAGCAGGTGAGC-CACTTCACCCT-GGCTGGC-CTGGAAGT--CCCAAACCCCTGCCTCGGTCACTACTGAGCTATGAAGCCAGTCGGGGTGACCAAAGGAAACGTCTGTACTCGATCCCTTGGTCAAACTTCCCAGGGGTGGGAGGCTGGGCAGGCAGCAGACCCAGGAGCTCCCCACCCTG----TCTCCTTATGTC-----------------------------CCGCTGCCCAGGAGGGC
i canFam3.chr33            C 0 C 0

a score=531217.000000
s hg38.chr3_KI270935v1_alt    191090 168 +    197351 -----AGAAA-------AGCAGGG------CCCAGGCAGCAGTGGCCACACCTGCCTCAGT-----GGTTTCAGCCC---------TGCTCTCTCAAAGGTTGAC-----CTGCTATTG----ACTGGAAGGTATCACATTCCCTTGTTTCCTTCTGTAACCAGAGAAGAAGGTAAGGGGTAAGGGTGGGAGAGGGGAGAGAGACAGGA
s panTro4.chr3             199828447 168 + 202329955 -----AGAAA-------AGCAGGG------CCCAGGCAGCAGTGGCCACACCTGCCTCAGT-----GGTTTCAGCCC---------TACTCTCTCAAAGGTTGAC-----CTGCTATTG----ACTGGAAGGTATCACATTCCCTCGTTTCCTTCTGTAACCAGAGAAGAAGGTAAGGAGTAAGGGTGGGAGAGGGGAGAGAGACAGGA
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199842046 161 + 202140232 -----AGAAG-------AGCAGGG------CCCAGGCGGCACTGGCCACACCAGCCTCCAT-----GGTTTCAGCCC---------TGCTCTTTCAAAGGTGGAC-----CTGCTATTG----ACTGGAAGGTATCACATTCCCTCGTTTCCTTCCATAACCAGAGAAGA-------GGGTAAGGGTGGGAGAGGGGAGAGAGACAGGA
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120950458 161 + 123690457 -----AGAAG-------AGCAGGG------CCCAGGCAGCACTGGCCACACCAGCCTCCGT-----GGTTTCAGCCC---------TCCTCTCTCAAAGGTGGAC-----CTGCTATGG----ACTGGAAGGTAGCACATTCCCTCGTTTCCTTCTGTAACCAGAGAAGA-------GGGTAAGGGTGGGAGAGGGGAGAGAGACAGGA
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       99807 158 +    111706 --------AG-------AGCAGGG------CCCAGGTGGTGCTGGCCACACCTGCCTCCGT-----GATTTCAGCCC---------TGCTCTCTCAAAGGTGGAC-----CCGCTGTTG----ACTGGAAGGTATCACCTTCCCGCATTTCCTTCTGTACCCAGAGAAGA-------GGGTAAGGGTGGGAGAGGGGAGAGAGACAGGA
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                130665 161 + 192460366 -----AGAAG-------AGCAGGG------CCCAGGTGGTGCTGGCCACACCTGCCTCCGT-----GATTTCAGCCC---------TGCTCTCTCAAAGGTGGAC-----CTGCTATTG----ACTGGAAGGTATCACCTTCCCGCATTTCCTTCTGTACCCAGAGAAGA-------GGGTAAGGGTGGGAGAGGGGAGAGAGACAGGA
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                127453 161 - 187378091 -----AGAAG-------AGCAGGG------CCCAGGCGGTGCTGGCCACACCTGCCTCCGT-----GATTTCAGCCC---------TGCTCTCTCAAAGGTGGAC-----CCGCTATTG----ACTGGAAGGTATCACCTTCCCGCATTTCCTTCAGTACCCAGGGAAGA-------GGGtaagggtgggagaggggagagagacagga
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               479882 161 -  91754291 -----AGAAG-------AGCAGGG------CCCAGGTGGTGCTGGCCACACCTGCCTCCAC-----GATCTCAGCCC---------TGCTCTCTCAAAGGTGGAC-----CCGCTATTG----ACTGGAAGGTATCACCTTCCCTCATTTCCTTCTGTAACCAGAGAAGA-------GGGTAAGGGTGGGAGAGGGGAGACAGACCGGA
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               988982 161 -  74750902 -----AGAAG-------ATCAGGT------CCCAGGCGGTGCTGGCCACACCTGCCTCCGT-----GATCTCAGCCC---------TGCACTCTTGAAGGTGAAC-----TTGCTACTG----ACTGGAAGGCGTCACACTCCCTAGTTTCCTTCTGTAAACAGAGAAGA-------GGGTAAGGGTGGGAGAGGGGAGGGAGAGAGGA
i calJac3.chr17            C 0 C 0
s mm10.chr16                65479986 169 -  98207768 -----agaaA-------GGCAAGA------CCCTGGAGATACCAGCCATACCAGCCATCCC-----TGCCCCACCCCAAGCCCCAATCTTCTCTCAAAGGTGAAC-----TGGCTACAGTTAAATTCGAATTTAACAAATT--ATAGTTTCCTGCATAACTCC---AAGA-------GAGTAAAGGTGAGAGAGGGTATAGGGACAGGA
i mm10.chr16               I 494 I 1891
s canFam3.chr33             29119372 187 +  31377067 TGGAGAGAAGTGGTGGAAACAGGGGGGCGACCCAGCTGGAGCTCACCACACCTGCCCCTGCCCTGAGATTTCAACCC---------CATTCTTTCAAAGGCGGACTTACACTACAGCTG----AGT-GAAGGCCTCGTACTTCCTGGTTTCCTCTTGAATCCCACTAAGA-------GAAC-AGGGTAGGCAGGGGGAGAGGGACAGGA
i canFam3.chr33            C 0 C 0

a score=2583626.000000
s hg38.chr3_KI270935v1_alt    191258 904 +    197351 CAGTATATCTAAAAATAAACGTACCCCACCTCA-ACCTCAAGCATTGCACAGAAAGGTGTGTCCGCCTGCTCTTCACCCGCC---TGTGACCCCCGCATTCCCTCCAGG--TGAGCAGGAGCCCGACCTAGACAC--TCTCTTTAGCCTACA-CA-TGCCAGACTCTCCCTTTAGAGGAAAAAGGGACTTCTCACCAAGCCACA--CCCCTTGAAACTGCTTCCTCGG-GTGCACCTGGAGTGTTCTCACTCCTCGG-CCCCAGTTCCCACTCACACTTCCTGGAGCT----------------------GGAGGAGGGGGCAAGAGGGTGATGCGTCATAAGCC-----TGCAT----------------------------------GGACATTGTCACTGAAATGAAAGCTCAGCTTCCAGGGTCCGGAGACGGCTTTGGCCCCAAGGTGCCAGGGACAGCATAAGCTGCCGGGACCTGGCGAGGCCCAGGGGGCGAGCCTTCGGGCAACATCTAGCCTGGCACTCCTGGTTTCGTGCTGGAGGAGCAGGGTGAGAGAGGG-GCTACTGTTGAGCTGTAGGAGGCAGAGTGGGTGCT---GGGGGAAAGAGCAGGAGCTTTGGAgtcactgtgggc-aagccacttcctagctgagcctcagtctccatgtctgcacagtggggagagtagacgtaattcctaTTAGCTTAGTACGTCGTAGATTCTCAGC-----AAATGTTAG--CGTCCCCACGCCACCGCCCCCC---AGATGTGGGCATGGAAAGAGAAACA---AACTATTTGGAAGGAGAGTCTGGGGTTGTTCTGGGTGGAGGGCCAGGTCATAGACATGATGTGGTGGCAATGCCTGATTCTGGCTGAGGGAATCATTCTGGAATGGTGAGGGGG-T----GGATCTGGCCACAGGGCTCAGGAGACTATTGTCGTCTCAGGGGTCCTCACAAAGTG----------------GCTGGGCCAGGTGAGCTGGTGTT
s panTro4.chr3             199828615 904 + 202329955 CAGTATATCTAAAAATAAACGTACCCCACCTCA-ACCTCAAGCATTCCACAGAGAGGTGTGTCCGCCTGCTCTTCACCTGCC---TGTGACCCCCGCATGCCCTCCAGG--TGAGCAGGAACCCGACCTAGATAC--TCTCTTTAGCCTACA-CA-TGCCAGACTCTCCCTTTAGAGGAAAAAGGGACTTCTCACCAAGCCACA--CCCCTTGAAACTGCTTCCTCGG-GTGCACCTGGAGTGTTCTCACTCCTTGG-CCCCAGTTCCCACTCACACTTCCTGGAGCT----------------------GGAGGAGGGGGCAAGAGGGTGATGCGTAATAAGCC-----TGCAT----------------------------------GGACATTGTCACTGAAATGAAATCTCAGCTTCCAGGGTCCGGAGATGGCTTTGGCCCCAAGGTGCCAGGGACAGCATAAGCTGCCGGGACCTGGCGAGGCCCAGGGGGCAAACCTTCGGGCAACATCTAGCCTGGCCCTCCTGGTTTCGTGCTGGAGGAGCAGGGTGAGAGAGGG-GCTACTGTTGAGCTGTAGGAGGCAGAGTGGGTGCT---GGGGGAAAGAGCAGGAGCTTTGGAgtcactgtgggc-aagccacttcctagctgagcctcagtctccatgtctgcacagtggggagattagacgtaattcctaTTAGCTTAGTACATCGTAGATTCTCAGC-----AAATGTTAG--CGTCCTCACGCCACCGCCCCCC---AGATGTGGGCATGGAAAGAGAAACA---AACTATTTGGAAGGAGAGTCTGGGGTTGTTCTGGGTGGAGGGCCAGGTCATAGACATGATGGGGTGGCAATGCCTGATTCTGGCTGAGGGAATCATTCTGGAATGGTGAGGGGG-T----GGTTCTGGCCACAGGGCTCAGGAGACTATTGTCGTCTCAGGGGTCCTCAGAAACTG----------------GCTGGGCCAGGTGAGCTGGTGTT
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199842207 896 + 202140232 CAGTATATCTAAAAATAAACGTACCCCACCTCA-ACCTCAAGCATTCCACAGAAAGGTGTGTCCACCTG--CTTCACCCACC---TGTGACCCTCGTGTTCCCTCCAGG--TGAGGAGGAGCCAGACCTGGACAC--TCTCTTCAGCCCACA-CA-TGCCAGACTCTCCCTTTAGAGGAAAAAGGGACATCTTACCAAGCCACA--CCCCTTGAAACTGCTTCCTCAG-GTGCACCTGGAGTGTTCTCACTCCTCGG-CCTCAGTTCCCACTCACACTTCCTGGAGCT----------------------GGAGGAGGGGGCAAGAGGGTGATGACTAATAAGCC-----TGCAG----------------------------------GGACATTGTCACTGAAGTGAAAGCTCAGCTTCCAGGGTCCGGAGACGGCTTTGGCCCCAAGGTGCCAGGGACAGCATAAGCTGCCGGGACCTGGCGAGGCCC-GGGGGTGAGCTTTCAGGCAACATCTAGCCTGGCCCTCCTGGTTTCCCGCTGGAGGAGCAGGGTGAGAGAGGG-GCTACTGTTGAGCTGTAGGAGGCAGAGTGGGTGCT---GGGGGAAA-AGCAGGAGCTTTGGAgtcactgtgggc-aagccacgtcctagctgagcctcagtctccatgtctgcacagtggggagagtagatgtaattcctattagcttagcacatcgtagattctCAGC-----AAATGTTAG--CGTCCCCGCCCCACCGCCCCCC---AAATGTGGGCATGGAAAGAGAAACA-------ATTTGGAAGGAGAATCTGGGGTGGTTCTGGGTGGAGGGCCAGATCACTGACATGATGGCATGGCAAAGCCTGATTCTGGCTGAGGGAATCATTCTGGAAGGGTGAGGGGG-T----GGGTCTGGCCACAGGGCTCAGGAGACTGTTGTCCCTTCAAGGATCCTCGCAGACTG----------------GCTGGGCCAGGTGAGCTGGTGTT
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120950619 883 + 123690457 CAGTATATCTAAAAATAAACGTATCCCACCTCA-ACCTCAAGCATTCCACAGAAAGGTGTGTCCACCTGCTCTTCACCCGCC---TGTGACCCCCGCGTGCCCTCCAGG--TGAGGAGGAGCCAGACCTAGACAC--TCTCTTTAGCCCACA-CA-TGCCAGACTCTCCCATTAGAGGAAAAAGGGACTTCTCACCAAGCCACA--GCCCTTGAGACTGCTTCCTCAG-GTGTGCCTGGAGTGTTCTCACTCCTCAG-CCCCAGTTCCCACTCACACTTCCTGGAGCT----------------------GGAGGAGGGGGCAAGAGGGTGATGACTAATAAGCC-----TGCAT----------------------------------GGACATTGTCACTGAAATGAAAGCTCAGCTTCCAGGGTCCAGAGACGGCTTTGGCCCCAAGGTGCCAGGGACAGCATAAACTGCCGGGACCTGCCGAGGCCCAGGGGGCGAGCCTTCGGGCAGCATCTAGCCTGGCCCTCCTGGTTTCCCGCTGGAGGAGCAGGG-------------------TGAGCTGTAGGGGGCAGAGCGGGTGCT---GGGGAAAC-AGCAGGagctgtggagtcactgtgggc-gagccacgtcctagctgagcctcagcctccatgtctgcacagtggggagagcagacGGAATTCCTATTAGCTTAGCACAGCGTAGATTCTCAGC-----AAATGTTAG--CGTCCC--CCCCACCGCCCCCC---AAATGTGGGCATGGAAAGAGAAACA---AACTATTTGGAAGGAGAGTCTGGGGTTGTTCTGGGTGGAGGGCCAGATCACAGACATGATGGGGTGGCAATGCCCGATTCTAGCTGAGGGAATCATTCTGGAAGGGTGAGGGGG-T----GGGTCTGGCCACAGGGTTCAGGAGACTGTTGGCCCCTCAAGGGTCCTCGAAAACTG----------------GCTGGGCCAGGTGAGCTGGTGTT
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127       99965 901 +    111706 C-GTGTATCTAAAAATAAACGCGCCCCACCTCA-ACCTCAAGCATTCCACAGACAGGGGCGTCCGCCTGCTTTTCACCCACC---TGCGACCCCCGCATGCCCTCCAGG--TGAGGAGGAGCCAGACCTAGACACCTTCTCTTTGGCCCACA-CA-TGCCAGACTCTCCCTTTAGAGGAAAAAGGAACTTCTCACCAAGCCCCA---CCCCTGACACTT-TGCCTCAG-GTGCACCTGGAGTGTTCTCAGTCCTCGG-CCCCAGTTCCCGCTCACACTTCCTGGAGCT----------------------GGAGGAGGGGGTGAGAGGGTGATGACTGATAAGCC-----TGCAT----------------------------------GGACATT-TCACTGAAATGAAAGCTCAGCTTCCAGGGCCCGCAGCCGGCTTTGGCCCCAAGGTGCCAGGGACAGCATAAGCTGCCGGGACCTGGCGAGGCCCAGGGTTCGAGCCTTCGGGCAGCACCTAGCCCGGCCCTCCTGGTTTCCCGCTGGAGGAGCGGGGTGAGAGAGGG-GCCGCTGCTGAGCTGTAGGAGGCAGAGCGGGTGCC---AGGGAAAG-AGCAGGAGCTTTGCAgtcactgcgggcgaagccacttcctagctgagccccaggctccacgtctgcacagtcaggagagtagacgtgatTCCTGTGAGCTTAGCACATCGCAGGTTCTCAGC-----AAATGTGAG--CGTCCCC-TGCCCCTGCCCCCC---GAATGTGGACGTGGGAAGAGAAACA---AACTCTTTAGAAGGAGAGTCTAGGGTTGTTCTGGGTGGAGGGCCCGATCATAGACATGACGGAGTGACAATGCCTGATTCTGGCTGAGGGAATAATTCTGGAAGAGGGAGGGGG-T----GGGCATGGCCACAAGGCTCGGGAGGCTATTGTCCCCTCAAGGGTCCTCGCAAACTG----------------GCTGGGTCAGGTGAGCTGGTGTT
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                130826 901 + 192460366 C-GTGTATCTAAAAATAAACGCGCCCCACCTCA-ACCTCAAGCATTCCACAGACAGGGGCGTCCGCCTGCTTTTCACCCACC---TGCGACCCCTGCATGCCCTCCAGG--TGAGGAGGAGCCAGACCTAGACACCTTCTCTTTAGCCCACA-CA-CGCCAGACTCTCCCTTTAGAGGAAAAAGGAACTTCTCACCAAGCCCCA---CCCCTGACACTT-TGCCTCAG-GTGCACCTGGAGTGTTCTCAGTCGTCGG-CCCCAGTTCCCGCTCACACTTCCTGGAGCT----------------------GGAGGAGGGGGTGAGAGGGTGATGACTGATAAGCC-----TGCAT----------------------------------GGACATT-TCACTGAAATGAAAGCTCAGCTTCCAGGGCCCGCAGCCGGCTTTGGCCCCAAGGTGCCAGGGACAGCATAAGCTGCCGGGACCTGGCGAGGCCCAGGGTTCGAGCCTTCGGGCAGCACCTAGCCCGGCCCTCCTGGTTTCCCGCTGGAGGAGCGGGGTGAGAGAGGG-GCCGCTGCTGAGCTGTAGGAGGCAGAGCGGGTGCC---AGGGAAAG-AGCAGGAGCTTTGCAGTCACTGCGGGCGAAGCCACTTCCTAGCTGAGCCCCAGGCTCCACGTCTGCACAGTCAGGAGAGTAGACGTGATTCCTGTGAGCTTAGCACATCGCAGGTTCTCAGC-----AAATGTGAG--CGTCCCC-TGCCCCTGCCCCCC---GAATGTGGACGTGGGAAGAGAAACA---AACTCTTTAGAAGGAGAGTCTAGGGTTGTTCTGGGTGGAGGGCCCGATCATAGACATGACGGAGTGACAATGCCTGATTCTGGCTGAGGGAATAATTCTGGAAGAGGGAGGGGG-T----GGGCATGGCCACAAGGCTCGGGAGGCTATTGTCCCCTCAAGGGTCCTCGCAAACTG----------------GCTGGGTCAGGTGAGCTGGTGTT
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                127614 901 - 187378091 cagtgtatctaaaaataaatgcGCCCCACCTCA-ACCCCAAGCATTCTACAGACAGGGGCGTCCGCCTGCTTTTCACCCACC---TGTGACCCCCGCATGCCCTCCAGG--TGAGGAGGAGCCAGACCCAGACACCTTCTCTTTAGCCCACA-CA-TACCAGACTCTCCCTTTAGAGGAAAAAGGAACTTCTCACCAAGCCCCA----CCCTGACACTG-TGCCTCAG-GTGCACCTGGAGTGTTCTCAGTCCCCGG-CCCCAGTCCCCGCTAACACTTcctggagct----------------------ggaggaggggGTGAGAGGGTGATGACTGAGAAGCC-----TGCAT----------------------------------GGACATT-TCACTGAAATGAAAGCTCAGCTTCCAGGGCCCACAGCCGGCTTTGGCCCCAAGGTGCCAGGGACAGCATAAGCTGCCGGGACCTGGCGAGGCCCAGGATTCGAGCCTTCGGGCAGCATCTAGCCCGGCCCTCCTGGTTTCCCGCTGGAGGAGCGGGGTGAGAGAGGG-GCCGCTGCTGAGCTGTAGGAGGCAGAGCAGGTGCC---AGGGAAAG-AGCAGGAGCTTTGCAGTCACTGCGGGCGAAGCCACTTCCTAGCTGAGCCCCAGGCTCCACGTCTGCACAGCCGGGAGAGTAGACGTGATTCCTGCGAGCTTAGCACATCGCAGGTTCTCAGC-----AAATGTGAG--cgtcccc-tgcccctgcccccc---gAATGTGGACGTGGGAAGAGAAACA---AACCCTTTAGAAGGAGAGTCTAGGGTTGCTCTGGGTGGGGGGCCCGATCATAGACATGACGGAGTGACAATGCCTGATTCTGGCTGAGGGAGTAATTCTGGAAGAGGGAGGGGG-T----GGGCATGGCCACAAGGCTCAGGAGGCCATTGTCCCCTGAAAGGTCCTCGCAAACTG----------------GCTGGGTCAGGTGAGCTGGTGTT
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               480043 902 -  91754291 CAGTGTATCTAAAAATAAATGCACCCCACCTCA-ACCTCAAGCATTCCACAGACAGGTGCGTCCGCCTGCTTTTCACCCACC---TGTGACCCCCGCATGCCCTCCAGG--TGAGGAGGAGCCAGACCTAGACACCTTCTCTTTAGCCCACA-CA-TGCCAGACTCTCCCTTTAGAGGAAAAAGGAACTTCTTACCAAGCCCCA---CCTCTGACACTGCTTCCTCAG-GTGCACCTGGAGTGTTCTCAGTCCTCGG--CCCGGTTCCCGCTCACACTTCCTGGAGCT----------------------GGAGGAGGGGGTGAGAGGGTGATGACTGATAAGCC-----TGCAT----------------------------------GGACATT-TCACTGAAATGAAAGCTCAGCTTCCAGGGCCCGGAGCTGGCTTTGGCCCCAAGGTGCCAGGGACAGCATAAGCTGCTGGGACCTGGCGAGGCCCAGGGTTCGAGGCTTCGGGCAGCACCTAGCCCGGCCCCCCTGGTTTCCCGCTGGAGGAGCGGGGTGAGAGAGGG-GCCGCTGCTGAGCTGTAGGAGGCAGAGCGGGTGCC---AGGGAAAG-AGCAGGAGCTTTGCAGTCACTGCGGGCAAAGCCGCTTCCTAGCTGAGCCCCAGGCTCCACGTCTGCACAGTCGGGAGAGTAGACGTGATTCCTGTGAGCTTAGCACATCGCAGGTTCTCAGC-----AAATGTGAG--CGTCCCC-TGCCCCTGCCCCCC---GAATGTGGACGTGGGAAGAGAAACA---AACTCTTTAGAAGGAGAGTCTAGGGTTGTTCTGGGCGGGGGGCCCGATCATAGACCTGACGGAGTGACAATGCCTGATTCTGGCTGAGGGAGTAATTCTGGAAGAGGGAGGAGG-T----GGGTATGGCCACAAGGCTCAGGAGGATATTGTCCCCTCAAGGGTCCTCGCAAACTG----------------GCTGGGTCAGGTGAGCTGGTGTT
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               989143 880 -  74750902 CAGTATATCTAAAAATAACTGTACCCCACCTCG-ACCTCAAGCATTCCACAGACAGGTGTGTCCACCCGCTCCTCACCCGCC---CGTGACCCCCGTGTGCCCTCCAGG--TGGGGAGGAACTAGACCTGGACACTTCTTCTTCAGCCCACACCA-TGCCAGACTCTCCCTTTAG-TGAAAAAGGGACCTCTTCCCAGGCCCCA-CCCCATTGAACCTGCTTCCGCAG-GTGCACCTGGAATGTTCTCAGTCCTCCGCCCCCACTTCTCACTCACACTTCCTGGAGCT----------------------GGAGGAGGGGGCAGGAGGAGGATGATGAATAAGGCTCCATTTCAT----------------------------------GGACATTGTCACTGAAATGAAAGCTCAGCCTCCGAGGTCCGGAGACGGCTTTGCATCCAAGAAGCCAGGGACAGCATAAGCTGCCAGAATCTGGTGAGGCCTAGGAGGCGAGCCTTTGGGCAGCCTCTCGCCTTGTTCCCCTGGTTTCCTGCTGGAGGAGCACGGTGTGAGAGGG-GCTGCAGCTGCGCTGTAGGAGCCAGGGTGGGTGCT---GGGGAAAG-AGCAGGAGCTTTGGAgtcactgtgggg-aagcc-cttcctagctgagcctcagtctccacatctgcacagccgggaGAGGGGATGTCATTCCTATCAGCTTAGTGCATCGTGGGCTCTCAGC-----AAATGTTAGTTCTTCCCT-CCCCACCCTCCGCCCGGGAACGCGGGCATGGGAAGAGAAAGA---AACTATTTGGAAGGAGAGTCTGGGGT---TCTGGATGGAAGGGCAGATCA-----------------------CTGATTCTGG--AAGGGAGACGT--------GGTGAGGGGGTT----GGGCCTGGCCACAGGGCTTAGGAGGCTGCTGTCCCCTCAAGGATCCTCGCAAACTG----------------GCTGGGTCAGGTGAGTTGGTGTT
i calJac3.chr17            C 0 C 0
s canFam3.chr33             29119559 937 +  31377067 CAGTA----AAAACATAAAGGAACCCTACCCTGTGACCCAGGCATTCCACAGCCAGGCTTGG-AGCCAACTCTCCACCCCCCACACCAGACCCCTCCCTGCTCTCCGGGGTTGGGAAAGA-----ACCTACACGTCTTCCCCTCTGCTCACA-CAGTCCCAGACTCTTCCTTTATAGGAAAAAGTGACTTCTCACTTTGCTCTGTCCCCCTTGAAATGCCTTCTTCCGAATGTGCCTGGAACGTTGTCTCCCCCTAGCCCTCAATTGCCACCCACACTTCCTGGAGCCCCGGAGAGCTGGGGGTCAGATGGGAGAAGGAGGCAAGAGGATTATCATCGCTAAGCC-----TGCGTCCCATGTCCCATGTGGGGGTGCGGTACTGCAAGATGAGGTTGGCTCTGAGGTGAGCATGAAGCTT-CGGGGCCAGGAGGCTGTGTTAGCCGTGAGGTGCCAG--------------GTCAGGG---GAGGGGGCCTGAGGGAGGGGCCACCAG------------CTGGTTCTCC-----TTCCAATGAAGG---GGAATGTGAGGGGGAGCTGCGGCCAAGCCCCAGAAGGCAGAGTGGGTGCTCCAGGGGAAAG-AACAGG-GCTTTGGGgtcaccatgggc-aacctgctttccagttgaacctcagtctccccatctgcacaatgggaatagta---atgatttctaTTAGGTTAACACATAGAAGTTTCTTGACTTTCTCTGTATCAG--TGTTCCC-TCCCCCTGCCCCAC--------CCCCCACAGAAAAAGAGCCAAGGAGTTGTTTAGAGCAAGAGCCTAGG--TCTTTGGGGGGCGGGGTCAGCTCTT-----TGAGGGGATTACAGTA--TAACTGGAGTGGAGTGACTAGCTGGGGAAGGGAAATAGGG-CAGAGAGGCCTGGCTATAGGGCTCAGGAGCCTACTATCCCCACCAGGCTCCTGGTAAACTGGGAGGTGATCTGCTCTGCTAGATCACGTGAACTGATGTT
i canFam3.chr33            C 0 I 5
e mm10.chr16                65480155 1891 -  98207768 I

a score=36780.000000
s hg38.chr3_KI270935v1_alt    192162 16 +    197351 TCTTATATGCGGGTAA
s panTro4.chr3             199829519 16 + 202329955 TCTCATATGCGGGTAA
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199843103 16 + 202140232 TCTCATACACAGGTAA
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120951502 16 + 123690457 TCTCATACGCAGGTAA
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127      100866 16 +    111706 TCTCCTGTGCAGGTAA
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                131727 16 + 192460366 TCTCCTGTGCAGGTAA
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                128515 16 - 187378091 TCTCCTGTGCaggtaa
i papAnu2.chr2             C 0 C 0
s chlSab2.chr15               480945 16 -  91754291 TCTCGTGTGCAGGTAA
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               990023 16 -  74750902 TCCCACAGGCAGATGA
i calJac3.chr17            C 0 C 0
e mm10.chr16                65480155 1891 -  98207768 I
e canFam3.chr33             29120496  5 +  31377067 I

a score=2548.000000
s hg38.chr3_KI270935v1_alt    192178 1 +    197351 A
s panTro4.chr3             199829535 1 + 202329955 A
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199843119 1 + 202140232 A
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120951518 1 + 123690457 A
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127      100882 1 +    111706 A
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                131743 1 + 192460366 A
i macFas5.chr2             C 0 C 0
s papAnu2.chr2                128531 1 - 187378091 a
i papAnu2.chr2             C 0 N 0
s chlSab2.chr15               480961 1 -  91754291 A
i chlSab2.chr15            C 0 C 0
e mm10.chr16                65480155 1891 -  98207768 I
e canFam3.chr33             29120496 5 +  31377067 I
e calJac3.chr17               990039 0 -  74750902 C

a score=25752.000000
s hg38.chr3_KI270935v1_alt    192179 21 +    197351 GGTGTTGCTCGTATGCAGGTA
s panTro4.chr3             199829536 21 + 202329955 GGTATTTCTCCTATGCGGGTA
i panTro4.chr3             C 0 T 44
s ponAbe2.chr3             199843120 21 + 202140232 GGTGTTTCTCATACGCGGGTA
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120951519 19 + 123690457 GGTGTTTCTCATA--CGGGTA
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127      100883 19 +    111706 GGTGTTTCTCA--TGCAGGta
i rheMac3.chrUn_JH291127   C 0 C 0
s macFas5.chr2                131744 21 + 192460366 GGTGTTTCTCATGTGCAGGTA
i macFas5.chr2             C 0 C 0
s chlSab2.chr15               480962 21 -  91754291 GGTGTTTTTCATACACAGGTA
i chlSab2.chr15            C 0 C 0
e mm10.chr16                65480155 1891 -  98207768 I
e canFam3.chr33             29120496  5 +  31377067 I
e calJac3.chr17               990039  0 -  74750902 C

a score=2730.000000
s hg38.chr3_KI270935v1_alt    192200 2 +    197351 AA
s ponAbe2.chr3             199843141 2 + 202140232 AA
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120951538 2 + 123690457 AA
i nomLeu3.chr11            C 0 C 0
s rheMac3.chrUn_JH291127      100902 2 +    111706 aa
i rheMac3.chrUn_JH291127   C 0 N 0
s macFas5.chr2                131765 2 + 192460366 AA
i macFas5.chr2             C 0 C 0
s chlSab2.chr15               480983 2 -  91754291 AA
i chlSab2.chr15            C 0 C 0
e mm10.chr16                65480155 1891 -  98207768 I
e canFam3.chr33             29120496 5 +  31377067 I
e calJac3.chr17               990039 0 -  74750902 C
e panTro4.chr3             199829557 44 + 202329955 T

a score=20648.000000
s hg38.chr3_KI270935v1_alt    192202 23 +    197351 GGTGTTTCTCGTATGCGGGTAAA
s panTro4.chr3             199829513 23 + 202329955 GGTGTTTCTCATATGCGGGTAAA
i panTro4.chr3             T 44 C 0
s ponAbe2.chr3             199843143 23 + 202140232 GGTGTCTCTCATACATGGGTAAA
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120951540 21 + 123690457 GGTGTTTCTC--ATGCGGGTAAA
i nomLeu3.chr11            C 0 C 0
s macFas5.chr2                131767 21 + 192460366 GGTGTTTCTCA--TGCAGGtaaa
i macFas5.chr2             C 0 N 0
s chlSab2.chr15               480985 23 -  91754291 GGTATTCCTCATGTGCAGGTAAA
i chlSab2.chr15            C 0 C 0
e mm10.chr16                65480155 1891 -  98207768 I
e canFam3.chr33             29120496  5 +  31377067 I
e calJac3.chr17               990039  0 -  74750902 C

a score=1200.000000
s hg38.chr3_KI270935v1_alt    192225 2 +    197351 GG
s panTro4.chr3             199829536 2 + 202329955 GG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199843166 2 + 202140232 GG
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120951561 2 + 123690457 GG
i nomLeu3.chr11            C 0 I 8
e mm10.chr16                65480155 1891 -  98207768 I
e canFam3.chr33             29120496 5 +  31377067 I
e calJac3.chr17               990039 0 -  74750902 C
e chlSab2.chr15               481008 0 -  91754291 C

a score=2006.000000
s hg38.chr3_KI270935v1_alt    192227 10 +    197351 TGTTTCTCGT
s panTro4.chr3             199829538 10 + 202329955 TATTTCTCCT
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199843168 10 + 202140232 TGTTTCTCAT
i ponAbe2.chr3             C 0 C 0
e mm10.chr16                65480155 1891 -  98207768 I
e canFam3.chr33             29120496  5 +  31377067 I
e calJac3.chr17               990039  0 -  74750902 C
e chlSab2.chr15               481008  0 -  91754291 C
e nomLeu3.chr11            120951563  8 + 123690457 I

a score=21895.000000
s hg38.chr3_KI270935v1_alt    192237 49 +    197351 ATGCGGGTAAAGGTGTTTCTCGTATGCGGGTAAAGGTGTTTCTCGTATG
s panTro4.chr3             199829548 49 + 202329955 ATGCGGGTAAAGGTGATTCTCATATGCGGGTAAAGGTGATTCTCATATG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199843178 49 + 202140232 ACGTGGGTAAAGGTGTTTCTCATACGCGGGTAAAGGTGTTTCTCATACG
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120951571 47 + 123690457 ATGCAGGTAAAGGTGTTTCTCATAT--GGGTAAAGGTGTTTCTCATACG
i nomLeu3.chr11            I 8 T 55
e mm10.chr16                65480155 1891 -  98207768 I
e canFam3.chr33             29120496  5 +  31377067 I
e calJac3.chr17               990039  0 -  74750902 C
e chlSab2.chr15               481008  0 -  91754291 C

a score=4.000000
s hg38.chr3_KI270935v1_alt    192286 8 +    197351 CGGGTAAA
s panTro4.chr3             199829597 8 + 202329955 CGGGTAAA
i panTro4.chr3             C 0 T 48
s ponAbe2.chr3             199843227 2 + 202140232 CG------
i ponAbe2.chr3             C 0 C 0
e mm10.chr16                65480155 1891 -  98207768 I
e canFam3.chr33             29120496 5 +  31377067 I
e calJac3.chr17               990039 0 -  74750902 C
e chlSab2.chr15               481008 0 -  91754291 C
e nomLeu3.chr11            120951618 55 + 123690457 T

a score=0.000000
s hg38.chr3_KI270935v1_alt    192294 1 +    197351 G
e mm10.chr16                65480155 1891 -  98207768 I
e canFam3.chr33             29120496 5 +  31377067 I
e calJac3.chr17               990039 0 -  74750902 C
e chlSab2.chr15               481008 0 -  91754291 C
e ponAbe2.chr3             199843229 0 + 202140232 C
e nomLeu3.chr11            120951618 55 + 123690457 T
e panTro4.chr3             199829605 48 + 202329955 T

a score=8925.000000
s hg38.chr3_KI270935v1_alt    192295 63 +    197351 TGTTTCTCATGCAGGTAAAGGTGTTTCTCATATGTGGGTAAAGGTGTTTCTGATATGCAGGTG-
s ponAbe2.chr3             199843229 48 + 202140232 -------------GGTGAAGGTGTTTCTCATACGTGGGTAAAGGTGTTTCT--CATGCAGGTA-
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120951563 60 + 123690457 TGTTTCTCATGCAGGTAAAGGTGTTTCTCATA--TGGGTAAAGGTGTTTCT--CATACGGGGTA
i nomLeu3.chr11            T 55 C 0
e mm10.chr16                65480155 1891 -  98207768 I
e canFam3.chr33             29120496  5 +  31377067 I
e calJac3.chr17               990039  0 -  74750902 C
e chlSab2.chr15               481008  0 -  91754291 C
e panTro4.chr3             199829605 48 + 202329955 T

a score=8872.000000
s hg38.chr3_KI270935v1_alt    192358 19 +    197351 AAGGTGTTTCTCATATGCG
s panTro4.chr3             199829557 19 + 202329955 AAGGTGATTCTCATATGCG
i panTro4.chr3             T 48 C 0
s ponAbe2.chr3             199843277 19 + 202140232 AAGGTGTTTCTCACATGCA
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120951623 19 + 123690457 AAGGTGTTTCTTATATGCA
i nomLeu3.chr11            C 0 C 0
e mm10.chr16                65480155 1891 -  98207768 I
e canFam3.chr33             29120496  5 +  31377067 I
e calJac3.chr17               990039  0 -  74750902 C
e chlSab2.chr15               481008  0 -  91754291 C

a score=6982.000000
s hg38.chr3_KI270935v1_alt    192377 30 +    197351 GGTAAAGGTG-ATTCTCACATGCGGGTAAAA
s panTro4.chr3             199829576 30 + 202329955 GGTAAAGGTG-ATTCTCATATGCGGGTAAAA
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199843296 31 + 202140232 GGTAAAGGTGTTTTCTCATATGCGGGTAAAA
i ponAbe2.chr3             C 0 C 0
e mm10.chr16                65480155 1891 -  98207768 I
e canFam3.chr33             29120496  5 +  31377067 I
e calJac3.chr17               990039  0 -  74750902 C
e chlSab2.chr15               481008  0 -  91754291 C
e nomLeu3.chr11            120951642  0 + 123690457 C

a score=53377.000000
s hg38.chr3_KI270935v1_alt    192407 79 +    197351 GGTGTTTCATGCAGCAGTT-GGCAAGTTGGTAACTTCTTCAAGCCCTGTGATTTCGAGATGGGGAGAGAAGTC----TGTGAGA
s panTro4.chr3             199829606 79 + 202329955 GGTGTTTCATGCAGCAGTT-GGCAAGTTGGTAACTTCTTCAAGCCCTGTGATTTCGAGATGGGGAGAGAAGTC----TGTGAGA
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199843327 79 + 202140232 GGTTTTTCATGCAGCAGTT-GGCAAGTTGGTAACTTCTTCAAGCACCGTGATTTCGAGATGGGGAGAGAAATC----TGTGAGA
i ponAbe2.chr3             C 0 C 0
s chlSab2.chr15               481008 82 -  91754291 GGTGTTTCATGCAGCAGTT-GGCAAGGTGGTAACTTCTTCAAGTACTGTGGTTTCGAGGTGTGGAGAGAAGTC-GTTTGAGAGA
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               990039 84 -  74750902 GTTGTTTGATGCAGCAGTTCTGCAAGGGGGTAAGTTCTTCAAGCCCTGTGGTTACCAGATGAGGAGACAAGCCTGTTTGAGACA
i calJac3.chr17            C 0 C 0
e mm10.chr16                65480155 1891 -  98207768 I
e canFam3.chr33             29120496  5 +  31377067 I
e nomLeu3.chr11            120951642  0 + 123690457 C

a score=258832.000000
s hg38.chr3_KI270935v1_alt    192486 325 +    197351 ATGCAGTTTTGAGAAGCAGAAGCAATGAGGTCGCATCAGCCTACTGCCGAGCATAACACACAAGGGCAAAGAAGACGGGGGTCTGGGA--------TTGGA-------GGGCTTCTTA-AAATTCTGACACTAGACCAACTTTCCAAGTTGTTAAAGCCTGCAGACCCCAGATGTAATCTGTCAGTGTGAGAGGAGTTAA-ATGTCAGCTCCAATATCTACATTATAATAATTGATACATATTACCTAATAATCAATATATTGTGATGTTATATCA-TAGCATTTATTACATACAACACAGTTACTATTATATTAGCTTCATCTACATGTGAGATCTGCTTTT
s panTro4.chr3             199829685 325 + 202329955 ATGCAGTTTTGAGAAGCAGAAGCAATGAGGTCGAATCAGCCTACTGCCGAGCATAACACACAAGGGCAAAGAAGACGGGGGTCTGGGA--------TTGGA-------GGGCTTCTTA-AAATTCTGACACTAGAGCAACTCTCCAAGTTGTTGAAGCCTGCAGACCCCAGATGTAATCTGTCAGTGTGAGAGGAGTTAA-ATGTCAGCTCCAATATCTACGTTATAATAATTGATACATATTACCTAATAGTCAATATATTGTGATGTTATATCA-TAGCATTTATTACATACAACACAGTTACTATTATATTAGCTTCATCTACATGTGAGATCCGCTTTT
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199843406 324 + 202140232 ATGCAGTTTTGAGAAGCAGAAGCATTGAGTTCGAATCAGCCTACTGCCGAGCATAACGCACAAGGGCAAAGAAGACGGGGGTCT-GGA--------TTGGA-------GGGCTTCCTA-AAATTCTGACACTATACCAACTCTCCAAGTTGTTAAAGCCTGCAGAGCCCAGATGTAATCTGACTGTGTGAGAGGAGTTAA-ATGTCAGCTCCAATATCTACATTATAATAATTGATACATATTACCTAAGAATCAATATATTGTGATGTTATATCA-TAGCATTTATTACATATAACACAGTTACTATTATATTAGCTTCATCTAAATATGAGATCTGCTTTT
i ponAbe2.chr3             C 0 C 0
s chlSab2.chr15               481090 321 -  91754291 ATGCAATTTTGAGAAGCAGAAGCAATGAGGTTGGGTCGGCCTACTGCCGAACATAACACACAAGGGCAAAGAA---GGGGGCCCCGGA--------TCAGA-------GGGCTTCCT--AAGTTCTGACACTAGACCAACCCTCCAAGCTGATAGAGCCTGCAGACCCCAGATGTAATGTGACTGTGTGAGAGGAGTTAA-ATGTCGGCTCCAATATCCACATTATAATAATTGATACATATTACCTAATACTCAATACATTGTGACGTTATATCA-TAGCATTTATTACATACAACATAGTTATTATTATATTAGCTTCATCTAAATGTGAGATCCGCTTTT
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               990123 313 -  74750902 ATGCGGTTTTCAGAAG----AATAATGAGGTTGAATCAGCCCACTGCCGGGCGTAACACACCAGGGCAAAGAA-GCAGGGGTCCTGGG--------TTGGA-------GGGCTTTCCACGTATTCCCA-GCTAGACCAGCTCTCCAGGTTGTCAACGCCTGCAGA-CCCGCATGCAAGCTGACTGTGTGAGAAGAGTTCA-ATGTAGGCTCCAATATCCACGTGATAATAA-TGATACACATTACCTAGTGATCAATATATTGTGATGTTATATC---AGCATTTATTACATACAGCACAGTTAC---TATATTAGCCTTATCTAAATGTAAGATTCACTTTT
i calJac3.chr17            C 0 C 0
s canFam3.chr33             29120501 315 +  31377067 ATGAGGCTTGGAGACTCAGAACCAGCGGTACCGAATCAATCTGCTAAAAAGCATAACATGCAAAGGCAAGGAAGAGGCATGTCCTGGGCAGATATTTTCGATTCAATCGAGTTTTTTT---ATCCTGACACTAGACCATCTCACAG-------GAAGCCCGCAGACCCTTGATGC--CCTGACTGTGTTGG--GAGTTCAGATGTAGACTCCAATATCT-TATTAGAATAATTAATATGTAGTA-----TAATAAATATTGCAACATGTGATAGAATTAGCATATTTTATATAGA--------ATTATTGCATTAGCCTAATTTGAATGTGAGATTGGTTCTT
i canFam3.chr33            I 5 C 0
e mm10.chr16                65480155 1891 -  98207768 I
e nomLeu3.chr11            120951642   0 + 123690457 C

a score=260143.000000
s hg38.chr3_KI270935v1_alt    192811 364 +    197351 T------AAAAAA-CTTACTTtattttttatagagatagggtcttactttgttgcccaggctggtcttttttttttttttttttt----tttttgagacagagtctcactctgttgcccaggctggagt------gcatgatctctctgcctcccggattcaagcgattctcctgcctcaccctcctgagtagctgggattacaggcgtgcgccaccacgcccaggtaatttttgtatttttagtagaaacggggtttcaccatgctggccaggctggtctcaagcccctgacctcaagtgatccacccgcctcggcctcccaaaatgctgggattacaggcatgagccaccacgcct-------------------------------------------------ggccAAGATTCACTTAAAAAAAA
s panTro4.chr3             199830010 362 + 202329955 T------AAAAAAACTTACTttattttttatagagatagggtcttactttgttgcccaggctggtcttttttttttttttttttt----tt---gagacagagtctcactctgttgcccaggctggagt------gcatgatctctttgcctcccgggttcaagcgattctcctgcctcaccctcctgagtagctgggattacaggcgtgcgccaccacgcccaggtaatttttgtatttttagtagagacggggtttcaccatgctggccaggctggtctcaagcccctgacctcaagtgatccacccgcctcggcctcccaaaatgctgggattacaggcatgaaccaccacgcct-------------------------------------------------ggccAAGATTCACTTAAAAAAAA
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199843730 354 + 202140232 T------AAAAAA---CAttttattttttatagagatagggtcttactttgttgcccaggctggtctttttttttttttttt------------gagacagagtctcgctctgttgcccgggctggagt------gcatgatcgctctgcctcctgggttcaagcaattctcctgcctcagcctcccgagtagctgggattacaggcgtgtgccacgacgcccaggtaatttttgtatttttagtagagacggggttttaccgtgctggccaggctggtctcaatcccctgacctcaagtgatccacctgccttggcctccgaaaatgctgggattacaggcgtgagccaccacgcct-------------------------------------------------ggccGAGATTAACTTAAAAAAAA
i ponAbe2.chr3             C 0 C 0
s chlSab2.chr15               481411 359 -  91754291 T------AAAAAT-CTTAttttagtttttaaagagatagggtctcactttgttgcccaggctGGtcttttttttttttttttttc---------gagacagagtctcgctccgttgcccaggctcgagt------gcatgatctgtccgcctcccgggtccaagcgattctcctgcctcggcctcccgagtagctgggattacaggcatgagtcaccacgcccaggtaatttttgcatttttagtagagatggggtttcaccatgttggccaggctggtctcaagcccctgaccacaagtgatccacccaccttggcctcccaaagtgctgggattacaggcatgagccactgcaccc-------------------------------------------------ggccGAGATTCACTTACAAAAAA
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               990436 429 -  74750902 TTTTAAAAAAAAA-AGTAttttatttcttatagagataggatctcactttgttgcccaggctggtttatttatttatttatttttaatttttttggcacagagtcttgctctgttgcccaggctggagtgcagcggcacaatctctctgcctcctgagttcaagcaattctcctgcctcagcctcccgagtacctgaagttacaggcaagtgcctccacacacagctcatttttgcgtttttagtagagatgaggtttcaccatgttggccaggctggtctcaaactcctgacctcaagtgatccacccaccttggcctctcaaagtgctgggattacaggtgtgagccactgcgattacagtgtgattacagctgggattacaGGTGTGAATCACAGCTTTTTGAAAGCTGAGATTCGCTTTCAAAAAG
i calJac3.chr17            C 0 C 0
e mm10.chr16                65480155 1891 -  98207768 I
e canFam3.chr33             29120816   0 +  31377067 C
e nomLeu3.chr11            120951642   0 + 123690457 C

a score=-1911.000000
s hg38.chr3_KI270935v1_alt    193175  7 +    197351 AAA---ACTG
s panTro4.chr3             199830372  6 + 202329955 AAA----CTG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199844084  8 + 202140232 AAA--AACTG
i ponAbe2.chr3             C 0 C 0
s chlSab2.chr15               481770 10 -  91754291 AAAAAAACTG
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               990865  4 -  74750902 AAT------G
i calJac3.chr17            C 0 C 0
s canFam3.chr33             29120816  7 +  31377067 ---AAAAATG
i canFam3.chr33            C 0 C 0
e mm10.chr16                65480155 1891 -  98207768 I
e nomLeu3.chr11            120951642  0 + 123690457 C

a score=593330.000000
s hg38.chr3_KI270935v1_alt    193182 678 +    197351 CTTTAAAAACATTCATAAGCCGTTATTGCCTGGAGAGTCTTTGAATGTGTCACACCCTTTAACACGCAGGAGCAGCCAATCCCCAAAGCCCTGGTCACGTGATGACAATTAGGCCACCTACCCTCCGTTATTCTGGCCCCTCTGCCAAGAGGCAGGCCCTCACCCAACTGACCCTACCAGCGCAGGGGCCTGAGTGCGGCTCTCCAAAGAAACTTGATGTT---------GGCATTCAGCC---ACAAGCCCGGCTCTCAGAGGAACCTGG-TGTGGGAAAGAC-G-CCCCACCTCCAGCCCCTGTGCCGTCAGAGTCAAGATCACTGTACTTTGCATAAAGTATTAGGAA---AAAACCCAAATTCTTGCTCTTTGATTAGAGCCTCTCCTTCTTTCCCCACCAGCCCTCTGCAGAAGCAAGAGGCAAAAC-TAAAA----CTCAG-GTGTTTTTATCC------GTGAGTCTGTGTTTCTGTGTAAGTGATCTATGCATTTAAAAACCAATAACTTACTTTATCCTTCTCAGGACCTGAAGTATGGTCTTTCATCAGATGCCTACAGAGGGT-AGGAAGGCCAGGAAGAGGTGGGGAGGGCAGGAGGGGAGCGCTGAACAAATGTAGAGGTTGGATCCAGGCGTGCGGATCAGACCTTGAACTAAGGAGCCATGGAGAGCACAGAGCCCCCAGGGACACGGGAAGAC
s panTro4.chr3             199830378 679 + 202329955 CTTTAAAAACATTCATAAGCTGTTATTGCCTGGAGAGTCTTTGAATGTGTCACACCCTTTAACACGCAGGAGCAGCCAATCCCCAAAGCCCTGGTCACATGATGACAATTAGGCCACCTACCCTCAGTTATTCTGGCCCCTCTGCCAAGAGGCAGGCCCTCACCCAACTGACCCTACCAGCGCAGGGGCCTGAGTGCGGCTCTCCAAAGAAACTTGACGTT---------GGCATTCAGCC---ACAGGCCCGGCTCTCAGAGGAACCTGG-TGTGGGAAAGAC-G-CCCCACCCCCAGCCCCTGTGCCGTCAGAGTCAAGATCACTGTACTTTGCATAAAGTATTAGGAA---AAAACCCAAATTCTTGCTCTTTGATTACAGCCTCTCCTTCTTTCCCCACCAGCCCTCTGCAGAAGCAAGAGGCAAAAC-TAAAA----CTCAG-GTGTTTTTATCC------GTGAGTCTGTGTTTCTGTATAAGTGATCTATGCATTTAAAAACCAATAACTTACTTTATCCTTCTCAGGACCTGAAGTATGGTCTTTCATCAGATGCCTACAGAGGGTTAGGAAGGCCAGGAAGAGATGGGGAGGGCAGGAGGGGAGCGCTGAACAAATGTACAGGTTGGATCCAGGCGTGCGGATCAGACCTTGAACTAAGGAGCCATGGAGAGTGCAGAGCCCCCAGGGACACGGGAAGAC
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199844092 677 + 202140232 CTTTAAAAACATTCATAAGCCGTTATTGCCTGGAGAGTCTTTGAATGTGTCACACCCTTTAACACGCACGGGCAGCCAATCCCCACAGCCCTGGTCACATGATGACAATTAGGCCACCTACCTTCAGTTATTCTGGCCCCTCTGCCAAGAGGCAGGCCCTCACCCAACTGACCCTACCAGCACAGGGGCCTGAGTGCGGCTCTCCAAAGAAACTGGATGTT---------GACATTCAGCC---ACAAGCCTGGCTTTCAGAGGAACCTGG-TGTGGGAAAGAC-GCCCCCACCTCCAGCCCCTGTGCCTTCAGAGTCAAGATCACTGTATTTTGCATAAAGTATTAGG-A---AAAACCCAAACTCTTGCTCTTTGATTAGAGCCTCTCCTTCTTTCCCCACCAGCCCTCTGCAGAAGTGAGAGGCAAAAC-TAAAA----CTCAG-GTGTTTTTATCCATATCTGTGAGTCTGTGTTTCTGTATAAGTGATCAATTCATTTAAAAACCAATAACCTACTTTATCCTTCTGAGGACCTGAAGTATGGTCTTTCATCAGATGCCTACAGAGGGTTAGGAAGGCTAGGAGGAGGTGGGGAAGGCAGGAGGGGAGCGCTGAGCAAATGTACAGGTTGGATCCAGGTGTGCGGACCAGACCTTGAACTAA--------GGAGAGCGCAGAGCCCCCAGGGACACGGGAAGAC
i ponAbe2.chr3             C 0 C 0
s chlSab2.chr15               481780 675 -  91754291 CTTTAAAAACGTTCCTAAGTCGTTACTGCCTGG-GAGTCCCTGAATGTGTCACACCCTTTAACACACGTGGGCAGTCAACCCCCAAAGCCCTGGTCACGTGACGACAATTAGGCCACCCACCCTCCGTTATTCTGGCCCCTGTGCCAAGAGGCAGGCCCTCACCCAACTCCCCCTACCCGCCCGGGCGCCTGAGCGCGGCTCTCCAAAGAAACTGGATGCT---------GACGTTCAGTC---ACAAGCCCAGCTTTCAGAGGAACCTGG-GGTGGG-AAGAC-A-CCGCACCTCCAGCCCCTGTGCCGTCGAAGTCGAGATCACGGTACTTCGCCTAAAGTACTAGGAA---ACAACT--AATTCTTGCTCTTTGATTAGAGTCTC-----CTTTCCCCACCAGCCCTCTGCAGAAGCCAGAGGCAAAAC-TAAAG----CTCAC-GTGTTTCTATGCGTATCTGTGAGTCTGTGTTTCTGTATAAGTGATCAATGCATTTAAAAACCAGTAACTTACTTTATCCTTCTCAGGACCTGAAGTATGGCCTTTCATCAGATGCCTACAGAGGGTGAGGAAGGC-AGGAGGAGGTGCAGAGGGCAGGAGGGGAGCACTGAGCAAATGTACAGGTTGGATCCAGGCGTGCGGACCAGATGTTGAGCCAAGGAGCCACAGAGAGCGCAGAGCCCCCAGGGACTCGAGAAGGC
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               990869 662 -  74750902 CTTTGAAAACATTCATAAGCCATCATTGCCTGGGGAGTC--TGAATGTCTGATGCCCTTTAACACGTATGGGCCACTAACCTCCAAA-CCCCGGTCACGTGACGACAATTAGGCCACCTACCCTCAGTTATTCTGGCCCCTCTGCCAGGAGGCGGG---------------CCCTACCAGCAGAGGCGCCTGAGTGCGGCTCTCCAAAGAAACAGGGTGTT---------GACACTCAGCCT--ATAAACCCAGCTTTCAGAGGAACCTGG-TGTGGGAAAGAC-A-CCGCAC------CCCCTCTGCTGTCACAGTAAAGATCACCGCACTTTGCCTAAAGTATTAGAAACAGGAAACCCAAATTCTCGCTCTTTGATTCAAGCCTCTCCTTCTTTCCCCACCAGCCCTCTGCAGAAGCAGGAGGCAAAACTTAAAA----CTCAC-GTGTTTTTATCTGTAT--GTGAGTCTGTGTTTCTACATAAATGATCAGCGCATTTAAAACACAATGACTGACTTTATCCTTCTCAGGACCTGAGGTACGGTCTTTCAACAGACGCCTACAGAGGGAGAGGAAGGCAAGGAGGAGGTGGGGAGGGCAGGAGGGGAGTGCTGAGCAAATGGACA-GTGGGGTCCAGGCGTGCGGACCAGACCCTGAACTCAGGAACCACGGAGAGCGCAGAGCCCCCAGGGA-ACGGGAAGAT
i calJac3.chr17            C 0 C 0
s mm10.chr16                65482046 572 -  98207768 CTTTTAAAAGAT------GCTGTTATTGCTTGAGGTGGCCCTGAATGTCTGATGCTTCTTAACATGTCTGGGCAGTGACACCTCAAGCCCCAGGTTCCCTTGAGGCAATTAAGCCAACTGCCCTAGGTTAACTGGGCCCTCCCGCC---------------TCCCAGGTGACACCTTCA------GGGTCTG---------------TGAAGCCGAATGTCAAATGTCGGGGCTTCTGGCCTGCAAAGGCCTGGCTTTCTGAGAACTCTGGCTGTAGAGAAGAC-A-GTTCACCTCAGGCC---------TCAGAGTAAAGGCCACT-CACTCTGCCTCCAATATT--------AATCCTCAACTTCT-----GTTGAGTA------------------------------TTCAGAA-TGAGAGGTCAGAT-GAAAAGCCCCTCAT-G---TTCTATAC----------------ATTTCTACACATCTG---TATGCA-TTAAAGAACAGCAGC--AATGTGTCTTCCTCAGGGCCTTAAGTCTGTGTTTCTGTCCCACACATA---AAGGTAAGGAAAGCCAGCAGGAAGTGGGGCAGCCAGCTGGGAAGTGCTAAGCACGCTCGCAAGTTCTATTCGGGCTTGGGGCTCAGATCTTGAAC--------CACTGAGGGGACTAGGTTCATAGGCTC-TGGAAAGGC
i mm10.chr16               I 1891 I 2
s canFam3.chr33             29120823 557 +  31377067 CTTTCAAAGTTTTCACGA-CTGTTCTTGCCTGGAGAGCCCCTGAACGTACGATTCTCTTTAGCAGGTCTGCA-AGCCAAAGCCCAAGCCCCTGGTCCCTCCGAGGCTATCAAGCCACCCACCCTTGTTAATTT--GTCCCTCTGCCAAGA--------------------------------CAGGTACCCG---------------------------CT---------G---------C---AAGGCCCTGGCTTTCTGAGGACACTGACTATGGGAAAACCTA-CCCCACTGCA--CCCCGGGGCCATCAGAGTAAAGATCCCTGCA-TTTACTTAAAGTATTAAGAACA-TGAACCCAA--CCCTGTTGTTTGGTTTGAACCTC---TTCCTTCTCCGCCAGCCCCACGTAGGAGAAAGAGACAAGAT-TAACA----TTTGCTATGATTTCATTCATCTC-TTGAGTCTGTGTTTCTGTATAAATGGCCGATGCATTAAAGA---AAAGACTCCTTGTACCCTTCTCAGGGCC--GAACATGGCCTTTCATCAGAGGAATACAGGGGGTGAGGAAGGCAAGAAGGAAATGGGGAGAGCAGGCGGGGAGCGCTGGACAAACTTACAGGCCCGCT-CAGGCGTCTG-----------------------------------------CTCAAGGCCACAGG-----
i canFam3.chr33            C 0 C 0
e nomLeu3.chr11            120951642   0 + 123690457 C

a score=24662.000000
s hg38.chr3_KI270935v1_alt    193860 17 +    197351 GGTTGTCCTGGGTAGAT
s panTro4.chr3             199831057 17 + 202329955 GGTTGTCCTGGGTAGAT
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199844769 17 + 202140232 GGTTGTCCTGGGTAGAT
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120951642 17 + 123690457 GGTTGTCCTGGGTAGAT
i nomLeu3.chr11            C 0 C 0
s chlSab2.chr15               482455 17 -  91754291 GGTTGTCCTGGGTAGAT
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               991531 17 -  74750902 AGTTGTCCTGGGCAGAG
i calJac3.chr17            C 0 C 0
s mm10.chr16                65482620 17 -  98207768 TCCCGTCTAGGGTGGAT
i mm10.chr16               I 2 I 464
e canFam3.chr33             29121380  0 +  31377067 C

a score=287041.000000
s hg38.chr3_KI270935v1_alt    193877 254 +    197351 GGCAGCTCCAGAAGCCCCCAGCTGTGCCTCATCAGGCCCATGCTGAGACTACGGTCTCCTCTGCCCAGGAGGGCCACAGACAAGTGGAGAAAGCAGAAAAGCAGGGCCTGGGTGGCGCTGGCCTCACCTGCCTCCATGAGGCGGACA-GGAGCCTCGCAGCCGTGGACGCAGCCCAGGCCAAGCCATGCAGGGAGTAGTAACAAGAATAAATGAAGCCGTGAAGCCAGGGCCCCTTT-----GGCGCT---TGTGCAACCGCC
s panTro4.chr3             199831074 254 + 202329955 GGCAGCTCCAGGAGCCCCCAGCTGTGCCTCATCAGGCCCATGCTGAGACTACGGTCTCCTCTGCCCAGGAGGGCCAAAGACAAGTGGAGAAGGCAGAAAAGCAGGGCCTGGGTGGCGCTGGCCTCACCTGCCTCCATGAGGCGGACA-GGAGCCTCGCAGCCGTGGACGCAGCCCAGGCCAAGGCATGCAGGGAGTAGTAACAAGAATAAATGAAGCCGTGAAGCCAGGGCCCCTTT-----GGCGCT---TGTGCAACCGCC
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199844786 259 + 202140232 GGCAGCTCCAGGAGCCCCCAGCTGTGCCTCATCAGGCCCATGCTGAGACTACCATCTCCTCTGTCCAGGAGGGCCAAAGACAAGCGGAGAAAGCAGAAAAGCAGGGCCCGGGTGGCGCTGGCCTCACCTGCCTCCGTGAGGCGGACA-GGAGCCTCGCAGCTGTGGACTCAGCCCAGGCTAGGGCATGCCGGGAGCAGTAACAAGAATAAATGAAGCCGTGAAGCCAGGGCCCCTTTGGCAGGGCGCT---TGTGCAACTGCC
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120951659 259 + 123690457 GGCAGCTCCAGGAGCCCCCAGCTGTGCCTCATCAGGCCCATGCTGAGACTACCGTCTCCTGTGCCCAGGAGGGCCAAAGACAAGTGGAGAAAACAGAAAAGCAGGGCCTGGGTGGCACCGGCCTCACCTGCCTCCATGAGGCAGACA-GGAGCCTTGCAGCTATGGACTCAGCCCAGGCCAGGGCATGCAGGGAGTAGTGACAAGAATAAATGAAGCTGTGAAGCCAGGGCTCCTTTGGCAGGGCACT---TGTGCAACCGCC
i nomLeu3.chr11            C 0 M 1779
s chlSab2.chr15               482472 259 -  91754291 GGCAGCTCCAGGAGCCCCCAGCTGTGCCTCATCAGGCCCATGCCGAGACCACCCTCTCCCCTGCCCAGGAGGGCCAAAGACATGTGGAGAAAACAGAAAAGCAGGGCCCAGGTGGTGCTCGCCACACCTGCCTCCACGAGGCGGGCA-GGAGCCTCGCAGCCATGGACTCAGCCCCGGCCAGGGCATGGAGGGAGCAGTAACAAGAATGAATGAAGCCGTGAAGCCAGGGCCCCTCTGGCAGGGTGCT---TGTGCAACTGCC
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               991548 258 -  74750902 GGCAGTCCCAGGAGCCCCCAGCTGTGCTTCATCAGGCCCATGCTGAAACCATCCTCTCCCCAGCCCAGGAGGGCCATAGAAAAGTAGAGAAAGCAGAAACGCAGGGCCCAGATGGCACGGGCCACACCTGCCTCCATGAGGCAGACA-AGAGCCT-ACAGCCATGAACTCAGCCCAGGCCAGGGCATGGAGGGCACAGTAACAAGAATAAATGAAGCTTCGAAACCAGGGCCCCTTTGGCAGGGCGCG---TGTTCCATGAGC
i calJac3.chr17            C 0 C 0
s canFam3.chr33             29121380 157 +  31377067 ----------GAAGGCC---GCTGTG-------------------------------------------------------------------------GGCAGGGTCCCTGGGGCACAGGACAGGCCT-CCTGATGGGGGCAGACAGGGAGTCGGGGCGCTGGGGAGGCAACTCTGGGGTGCGGGTGAAGGGAGTGCCTGTGGG---------------GAAGCCAGAGCCCTTGT--CAGCGCACTAGGAGTTTAATGT--
i canFam3.chr33            C 0 C 0
e mm10.chr16                65482637 464 -  98207768 I

a score=50544.000000
s hg38.chr3_KI270935v1_alt    194131 58 +    197351 AACCTGCGTAGTTCTGTGAGCACTGGGACACGTGTT-GGTGCTGACTCATCAAAATCCC
s panTro4.chr3             199831328 58 + 202329955 AACCTGCGTAGTTCTGTGAGCACTGGGACACGTGTT-GGTGCTGACTCATCAAAATCCC
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199845045 58 + 202140232 AACCTGCATAGTGCTGTGAGCACTGGGACACGTGTT-GGTGTTGACTCATCAAAGTCCC
i ponAbe2.chr3             C 0 C 0
s chlSab2.chr15               482731 57 -  91754291 AACCTGCGAAGTGCTGTGAGAACT-GGACACGTGTT-GGTGCGGACTCATCAAAATCGC
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               991806 58 -  74750902 CACCTGCATAGCGCTGTGAGCACGGTGACACGTGTT-GGTGCTGACTCACCAGAATTCC
i calJac3.chr17            C 0 C 0
s canFam3.chr33             29121537 59 +  31377067 GGCCTGAGTGGCACCATGAGAAATGTGAGGAGTACTGGGGGCTGACTCACCCAAATTCC
i canFam3.chr33            C 0 I 21
e mm10.chr16                65482637 464 -  98207768 I
e nomLeu3.chr11            120951918 1779 + 123690457 M

a score=3115.000000
s hg38.chr3_KI270935v1_alt    194189 4 +    197351 GGGA
s panTro4.chr3             199831386 4 + 202329955 GGGA
i panTro4.chr3             C 0 I 36
s ponAbe2.chr3             199845103 4 + 202140232 GGGA
i ponAbe2.chr3             C 0 C 0
s chlSab2.chr15               482788 4 -  91754291 AGGA
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               991864 4 -  74750902 AGGA
i calJac3.chr17            C 0 C 0
e mm10.chr16                65482637 464 -  98207768 I
e canFam3.chr33             29121596 21 +  31377067 I
e nomLeu3.chr11            120951918 1779 + 123690457 M

a score=2432.000000
s hg38.chr3_KI270935v1_alt    194193 5 +    197351 CTGTG
s panTro4.chr3             199831426 5 + 202329955 CTGTG
i panTro4.chr3             I 36 C 0
s ponAbe2.chr3             199845107 5 + 202140232 CTGTG
i ponAbe2.chr3             C 0 C 0
s chlSab2.chr15               482792 5 -  91754291 CTGTG
i chlSab2.chr15            C 0 I 15
s calJac3.chr17               991868 4 -  74750902 -AACG
i calJac3.chr17            C 0 C 0
e mm10.chr16                65482637 464 -  98207768 I
e canFam3.chr33             29121596 21 +  31377067 I
e nomLeu3.chr11            120951918 1779 + 123690457 M

a score=7634.000000
s hg38.chr3_KI270935v1_alt    194198 31 +    197351 TGG--------TTTTGGACAC--TGCTGGAGTCC-------AGGTGCC
s panTro4.chr3             199831431 31 + 202329955 TGG--------TTTTGGGCAC--TGCTGGAGCCC-------AGGTGCC
i panTro4.chr3             C 0 T 72
s ponAbe2.chr3             199845112 32 + 202140232 CGG-------CTTTTGGGCAC--TGCTGGAGTCC-------AGGAGCT
i ponAbe2.chr3             C 0 C 0
s calJac3.chr17               991872 48 -  74750902 TGGCTGCAGTCCTTTGGGAACGTGGCTGGAGTCCTTTGGGAAGGTGGC
i calJac3.chr17            C 0 C 0
e mm10.chr16                65482637 464 -  98207768 I
e canFam3.chr33             29121596 21 +  31377067 I
e chlSab2.chr15               482797 15 -  91754291 I
e nomLeu3.chr11            120951918 1779 + 123690457 M

a score=8982.000000
s hg38.chr3_KI270935v1_alt    194229 29 +    197351 CTGTGTGG------TTTTGGGCACTGCTGGAGTCC
s panTro4.chr3             199831390 29 + 202329955 CTGTGTGG------TTTTGGGCACTGCTGGAGTCC
i panTro4.chr3             T 72 C 0
s ponAbe2.chr3             199845144 30 + 202140232 CTGTGTGG-----CTTTTGGGCACTGCTGGCGTCC
i ponAbe2.chr3             C 0 C 0
s calJac3.chr17               991920 30 -  74750902 -----TGGAGTTCTTTGTGTACATGGCTGGAGTCC
i calJac3.chr17            C 0 I 869
e mm10.chr16                65482637 464 -  98207768 I
e canFam3.chr33             29121596 21 +  31377067 I
e chlSab2.chr15               482797 15 -  91754291 I
e nomLeu3.chr11            120951918 1779 + 123690457 M

a score=873.000000
s hg38.chr3_KI270935v1_alt    194258 3 +    197351 AGG
s panTro4.chr3             199831419 3 + 202329955 AGG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199845174 3 + 202140232 AGG
i ponAbe2.chr3             C 0 C 0
e mm10.chr16                65482637 464 -  98207768 I
e canFam3.chr33             29121596 21 +  31377067 I
e calJac3.chr17               991950 869 -  74750902 I
e chlSab2.chr15               482797 15 -  91754291 I
e nomLeu3.chr11            120951918 1779 + 123690457 M

a score=391.000000
s hg38.chr3_KI270935v1_alt    194261 4 +    197351 TGCC
s panTro4.chr3             199831422 4 + 202329955 TGCC
i panTro4.chr3             C 0 T 36
e mm10.chr16                65482637 464 -  98207768 I
e canFam3.chr33             29121596 21 +  31377067 I
e calJac3.chr17               991950 869 -  74750902 I
e chlSab2.chr15               482797 15 -  91754291 I
e ponAbe2.chr3             199845177 0 + 202140232 C
e nomLeu3.chr11            120951918 1779 + 123690457 M

a score=3474.000000
s hg38.chr3_KI270935v1_alt    194265 36 +    197351 CTGTGTGGTTTTGGGCACTGCTGGAGTCCAGGTGCC
s panTro4.chr3             199831390 36 + 202329955 CTGTGTGGTTTTGGGCACTGCTGGAGTCCAGGTGCC
i panTro4.chr3             T 36 T 36
e mm10.chr16                65482637 464 -  98207768 I
e canFam3.chr33             29121596 21 +  31377067 I
e calJac3.chr17               991950 869 -  74750902 I
e chlSab2.chr15               482797 15 -  91754291 I
e ponAbe2.chr3             199845177  0 + 202140232 C
e nomLeu3.chr11            120951918 1779 + 123690457 M

a score=3474.000000
s hg38.chr3_KI270935v1_alt    194301 36 +    197351 CTGTGTGGTTTTGGGCACTGCTGGAGTCCAGGTGCC
s panTro4.chr3             199831390 36 + 202329955 CTGTGTGGTTTTGGGCACTGCTGGAGTCCAGGTGCC
i panTro4.chr3             T 36 T 36
e mm10.chr16                65482637 464 -  98207768 I
e canFam3.chr33             29121596 21 +  31377067 I
e calJac3.chr17               991950 869 -  74750902 I
e chlSab2.chr15               482797 15 -  91754291 I
e ponAbe2.chr3             199845177  0 + 202140232 C
e nomLeu3.chr11            120951918 1779 + 123690457 M

a score=10178.000000
s hg38.chr3_KI270935v1_alt    194337 108 +    197351 CTGTGTGGTTTTGGGCACTGCTGGAGTCCAGGTGCCCTGTGTGGTTTTGGGCACTGCTGGAGTCCAGGTGCCCTGTGTGGTTTTGGGCACTGCTGGAGTCCAGGTGCC
s panTro4.chr3             199831390 108 + 202329955 CTGTGTGGTTTTGGGCACTGCTGGAGTCCAGGTGCCCTGTGTGGTTTTGGGCACTGCTGGAGCCCAGGTGCCCTGTGTGGTTTTGGGCACTGCTGGAGCCCAGGTGCC
i panTro4.chr3             T 36 T 108
e mm10.chr16                65482637 464 -  98207768 I
e canFam3.chr33             29121596  21 +  31377067 I
e calJac3.chr17               991950 869 -  74750902 I
e chlSab2.chr15               482797  15 -  91754291 I
e ponAbe2.chr3             199845177   0 + 202140232 C
e nomLeu3.chr11            120951918 1779 + 123690457 M

a score=28657.000000
s hg38.chr3_KI270935v1_alt    194445 306 +    197351 CTGTGTGGTTTTGGGCACTGCTGGAGTCCAGGTGCCCTGTGTGGTTTTGGGCACTGCTGGAGTCCAGGTGCCCTGTGTGGTTTTGGGCACTGCTGGAGTCCAGGTGCCCTGTGTGGTTTTGGGCACTGCTGGAGTCCAGGTGCCCTGTGTGGTTTTGGGCACTGCTGGAGTCCAGGTGCCCTGTGTGGTTTTGGGCACTGCTGGAGTCCAGGTGCCCTGTGTGGTTTTGGGCACTGCTGGAGTCCAGGTGCCCTGTGTGGTTTTGGACACTGCTGGAGTCCAGGTGCCCTGTGTGGTTTTGGGCAC
s panTro4.chr3             199831390 306 + 202329955 CTGTGTGGTTTTGGGCACTGCTGGAGTCCAGGTGCCCTGTGTGGTTTTGGGCACTGCTGGAGCCCAGGTGCCCTGTGTGGTTTTGGGCACTGCTGGAGCCCAGGTGCCCTGTGTGGTTTTGGGCACTGCTGGAGCCCAGGTGCCCTGTGTGGTTTTGGGCACTGCTGGAGCCCAGGTGCCCTGTGTGGTTTTGGGCACTGCTGGAGCCCAGGTGCCCTGTGTGGTTTTGGGCACTGCTGGAGCCCAGGTGCCCTGTGTGGTTTTGGGCACTGCTGGAGTCCAGGTGCCCTGTGTGGTTTTGGGCAC
i panTro4.chr3             T 108 C 0
e mm10.chr16                65482637 464 -  98207768 I
e canFam3.chr33             29121596  21 +  31377067 I
e calJac3.chr17               991950 869 -  74750902 I
e chlSab2.chr15               482797  15 -  91754291 I
e ponAbe2.chr3             199845177   0 + 202140232 C
e nomLeu3.chr11            120951918 1779 + 123690457 M

a score=6914.000000
s hg38.chr3_KI270935v1_alt    194751 27 +    197351 TGCTGGAGTCCAGGTGCCCTGTGTGGT
s panTro4.chr3             199831696 27 + 202329955 TGCTGGAGTCCAGGTGCCCGGTGTGGT
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199845177 27 + 202140232 TGCTGGAGCCCAGGTGCTCTGTGTGGT
i ponAbe2.chr3             C 0 C 0
e mm10.chr16                65482637 464 -  98207768 I
e canFam3.chr33             29121596 21 +  31377067 I
e calJac3.chr17               991950 869 -  74750902 I
e chlSab2.chr15               482797 15 -  91754291 I
e nomLeu3.chr11            120951918 1779 + 123690457 M

a score=3990.000000
s hg38.chr3_KI270935v1_alt    194778 10 +    197351 TTTGGGCACT
s panTro4.chr3             199831723 10 + 202329955 TTTGGGCACT
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199845204 10 + 202140232 TTTGGACACT
i ponAbe2.chr3             C 0 C 0
s canFam3.chr33             29121617 10 +  31377067 TCCGGGCCCT
i canFam3.chr33            I 21 C 0
e mm10.chr16                65482637 464 -  98207768 I
e calJac3.chr17               991950 869 -  74750902 I
e chlSab2.chr15               482797 15 -  91754291 I
e nomLeu3.chr11            120951918 1779 + 123690457 M

a score=7906.000000
s hg38.chr3_KI270935v1_alt    194788 17 +    197351 -GCTGGAGTCCAAG-----TGCC
s panTro4.chr3             199831733 17 + 202329955 -GCTGGAGTCCAAG-----TGCC
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199845214 17 + 202140232 -GCTGGAGTCCAAG-----CTCT
i ponAbe2.chr3             C 0 C 0
s calJac3.chr17               992819 17 -  74750902 -GCTGCAGTTCAGG-----TGCT
i calJac3.chr17            I 869 C 0
s canFam3.chr33             29121627 23 +  31377067 GCTTGGAATCCAGGACACCTGCC
i canFam3.chr33            C 0 I 1
e mm10.chr16                65482637 464 -  98207768 I
e chlSab2.chr15               482797 15 -  91754291 I
e nomLeu3.chr11            120951918 1779 + 123690457 M

a score=149011.000000
s hg38.chr3_KI270935v1_alt    194805 201 +    197351 GCTGGGGCTGCCTCGGGGAGGAGGAAAGTTTCC-AGAAGAGCTTACGG---------------AAGAGCCTGCGGCTTGGG-AGCAGCATCCCCCAGCTCGC-GTGCTGGGTGGGAAGTGCCGA-GGGGC--TGTGCAGAGGGCTCTCGTGTTTGGGGATTTT------CTCGGGACGGCTGTTTTCTACTTGAAATGGGGGTCCTGGAGTTCAT---GGGGAATGAGAGA
s panTro4.chr3             199831750 202 + 202329955 GCTGGGGCTGCCTCGGGGAGGAGGAAAGTTTCC-AGAAGAGCTTACGG---------------AAGAGCCTGCGGCTTGGG-AGCAGCATCCCCCAGCTCGC-GTGCTGGGTGGGAAGTGCCGAGGGGGC--TGTGCAGAGGGCTCTCGTGTTTGGGGATTTT------CTCGGGACGGCTGTTTTCTACTTGAAATGGGGGTCCTTGAGTTCAT---GGGGAATGAGAGA
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199845231 201 + 202140232 GCTGGGGCTGCCTCAGGGAGGAGGGAAGTTTCC-AGAAGAGCATGAGG---------------AAGAGCCTGCCACTTGGG-AGCAGCATCCTCCAGCTCTC-GTGCTGGGTGGGAAGTGCCGA-GGGGC--TGTGCAGAGGGCTCTCATGTTTGGGGATTTT------CTCCGGACGGCTGTTTTCTACTTGAAATGGGGGTCCTCGAGCTCAT---GGGGAATGAGAGA
i ponAbe2.chr3             C 0 C 0
s chlSab2.chr15               482812 184 -  91754291 GCTGGGGCTGCCTCAGGGAGGAGG--AGTTTCC-AGAAGAGCCTGAGG---------------AAGAGGCTGCAGTTTGGG-AGCAGCATCCCCCAACTCGC-GTGCCGGGTGGGACGTGCCGA-GGGGC--TGTGCAGAGGGCTCTCGTGTTTGGGGATTTT------CTCGGGATGGCTGTTTTC---------------TCCTTGAGTTCAT---GGGGAATGAGAGA
i chlSab2.chr15            I 15 C 0
s calJac3.chr17               992836 175 -  74750902 GCTGAGGCGGCCTCGGGAAGGAGGAACGTTTCTGAGAAGAGCTCAGGG------------------------------------------CCCCCATCTTGT-GTGCTGGGTGGGGGCTGTGGA-GGAGC--TGTGCAGA-GGCTCTCGTGTTTGGCGGTTTT------CTGGGGACAGCTGTTTTCTACTTGAAATGGGGGACCTTGAGCTCAT---GGGGAATGAAGGA
i calJac3.chr17            C 0 C 0
s canFam3.chr33             29121651 228 +  31377067 GAGGGGGGGAGCCCCAGAAGGTGGAAATTGCAG-AGAAGAATCTGAGGAGCCAACGGGGCTCCAGGGGCCTGCTTTGTAGACAGCAACAGCACCCACCTCACTGTGCTGGG-AGCAGGTGGGGG-GGTGCTTTGTGCAGAGGGCGCTGGGGTCTGCGGGGTTTGTAAGGCTGGGTGTCGCTGTTTCCCACCTGGGATGGAGGACTTGGAATTTGTGGAggggagtgagaga
i canFam3.chr33            I 1 I 230
e mm10.chr16                65482637 464 -  98207768 I
e nomLeu3.chr11            120951918 1779 + 123690457 M

a score=107602.000000
s hg38.chr3_KI270935v1_alt    195006 149 +    197351 GGTGAGCGGGAGCCAGAA--CGGGAAAGTCCTTGTCC-------GGGGGCTTCCGCAGGAGCCCCCTTGGCCCCTGGCCAGACACTTCCAGCTTCCCTCTGGC-CCCAGAGATTCCCCTCGGGGTCAGGCCCT--GCCTACCTGCCT----CGGCCTCGCGGTCG
s panTro4.chr3             199831952 150 + 202329955 GGTGAGCGGGAGCCAGAA--CGGGAAAGTCCTCGTCC-------GGGGGCTTCTGCAGGAGCCCCCTTGGCCCCTGGCCAGACACTTCCAGCTTCCCTCTGGCGCCCAGAGATTCCCCTCGGGGTCAGGCCCT--GCCTGCCGGCCT----CGGCCTCGCGGTCG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199845432 150 + 202140232 GGTGAGCAGGACCCAGAA--CGGGAAAGTCCTTGTCT-------GGGGGCTTCTGCAGGAGCCCCCTTGGCCCCTGGCCAGACACTTCCAGCTTCCCTCTGGCGCCCAGAGATTCCCCTCGGGGTCAGGCCCT--GCCTGCCGGCCT----CGGCCTCGCTGTCA
i ponAbe2.chr3             C 0 C 0
s chlSab2.chr15               482996 151 -  91754291 GGTGAGCAGGACCCAGAA--CAGGACCATCCTCACCCCAGAGAGAGAGGCTTCTGCAGGAGCCCCCAGGGCCCTTGACCAGACACTTCCAGCTCCCCCCTGGTGCCCAGAGATTCCCTTCGGGGTCAGGCcct--gcctgc----------cagcctcgctgtcg
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               993011 123 -  74750902 GGTGAGTGGGAACCAGAA---GGGCAAGTCCTCGTCTCAGGAGAGGGGGCTTCTGCAGCAGCAGCCTTGGCCCTTGGCCAGACACTTCCAGCTTCCC----------------------------CTGGCCCT--GCCTTGC---------CAGCCTCGCTGTCG
i calJac3.chr17            C 0 C 0
s canFam3.chr33             29122109 157 +  31377067 ggtgggggagagCCGGAGCGCGTGAAAGTCCTCATCT-GGGGAGGAGGCTTTCTGCAGGAA-------GAGCTTAGGCCAGAGACTTCCAGCTTCGCCCTGGTGCCCGAAGATGCTTCTGGCTTTCAGGCCCTTCGTCTGTGGCTCTGTGCCCACCTCCCACTCA
i canFam3.chr33            I 230 C 0
e mm10.chr16                65482637 464 -  98207768 I
e nomLeu3.chr11            120951918 1779 + 123690457 M

a score=669064.000000
s hg38.chr3_KI270935v1_alt    195155  969 +    197351 CCTTCCTGCC--CCTCAGGAAGCCCTGCCAAGGTCCCCT--------------GAAGGCC------CGCATGCTTGCCCGGAGGAGGCCGCTCCTCATGTTGCCCCAGGGACTGC-CCCCAAG---GCTTCCTTCTT----CAGGGAAG-----------------------------AGGCGGCT--------------------------------C------------TTGGCCAG------------------------------------------GGAGTTGT---------TGGGGCTGTTTCCAAC-----------CCAGGCAAACCTTCGCTTCCTCTCCTGCCC---TCCTGCCCCGGGTTTTTCCCCAGACAGACCTACGGGTGCCAGTGCCAGTACGGGTGCCAGTGCCCCAGCCTCGCCTCCCCTGCAGCTCCCTCCTGGGCCAGGCCGAACACCATCGTTTCACAGTCCACTTACTGAGCTGAGA----AGACCTCCTCGtatgaagatctgggaa-ggcctgagctttcaccggcctgcaagctcacgggc-gagcctgccatggttgaa-ggacgctggcagaagaccagagaccctggcccagggcagaggactctgtcactcacggcacggcacgttgctcagtgtgaa-----------------cgagcttcctcttca----ctcccgtttcctttgctccccaaaccccacgggggctacgcagaggc----ccagg--tggattctgtgg--cacagctgggtttgcctcaccgccggggatccccgtgcttaggaaacgccggactgtcatgaggggctgcgaagcaaacctgcccaacctt------tccc--gggggtggacgtcgtctttgttacactggacagcgagcaaatctcgcttctgccccagagggagacgctgtccctgcgcgccgagact-ttcactatatacacgtccttgac--gagagtccagagcaaaaggcc-----gtcggcgcatctgctcctgagacttgcagaaacgtggggaaccagt--gaaaaattgtctcc-GACATCCGAGACCCAGAG-----GAAGCCCAGGC-CAACGGGCGCAGGGTGCTGGC-----------TTTTCCGCTGCCTTAGGTTTCAC----------CGCGGGTG------------------CCGTCTAGCCCCGTCCCCCACGTCTCCGT
s panTro4.chr3             199832102  955 + 202329955 CCTTCCTGCC--CCTCAGGAAGCCCTGCCCAGGTCCCCT--------------GAAGGCC------CGCACGCTTGCCCGGAGGAGGCCGCTCCTCCCGTTGCCCCAGGGACTGC-CCCCAAG---GCTTCCTTCTT----CAGGGAAG-----------------------------AGGCGGCT--------------------------------C------------TTGGCCAG------------------------------------------GGAGTTGT---------TGGGGCTGTTTCCAAC-----------CCAGGCAAACCTTCGCTTCCTTTCCTGCCC---TCCTGCCCCGGGTTCTTCCCCAGACA---------GTGCCAGTGCCAGTACGGGTGCCAGTGCCCCAGCCTCGCCTCCCCTGCAGCTCCCTCCTGGGCCAGGCTGCACACCATCGTCTCACTGTCCACTTCCTGAGCTGAGA----ACACCTCCTCGtatgaaggtctgggaa-ggcctgagctgtcaccggcctgcaagctcacgggc-gagcctgccatggttgaa-ggacgctggcagaagaccagagaccctggcccagggca-aggactctgtcactcacggcacggcacgttgctcagtgtgaa-----------------cgagcttcctcttca----ctcccgtttcctttgctccccaaaccccacgggggctacgcagaggc----ccagg--tggattctgtgg--cacag-tgggtttgcctcaccgccgaggatccccgtgcttaggaagcgccggtctctcatga---gctgcgaagccaacctgcccagcctt------tccc---ggggtggacgttatcttggttacactggacagcgagcaaatctcgcttctgccccagagggagacactgtccccgagcgccgagact-ttcactatatacacgtccttgat--gagagtccagaacaaaaggcc-----gtcggcacatctgctcctgagacttgcagaaacgtgggaaaccagt--gaaaaattgttccc-gacaTCCGAGACCCAGAG-----GAAACCCAGGC-CAACGGGCGCAGGGTGCTGGCT----------TTTTCCGCTGCCTTAGGTTTCAC----------CGCGGGTG------------------CCGTCTACCCCCGTTCCCCACGTCTCCGT
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199845582  941 + 202140232 CCTTCCTGCC--TCTCGAGAAGCCCTGCCCAGGTCCCCT--------------GAAGGCC------TGCAAGCTTGCCCGGGGGAGGCCCCTCCTCACATTGCCCCAGGGACTGCTCCCCAAG---GCTTCCTTCTT----CAGGGAAG-----------------------------AGGCGGCT--------------------------------C------------TCGGCCAG------------------------------------------GGAGTTGT---------TGGGGCTGTTTCCAAC-----------CCAGGCAAACCTTCGCTTCCTTTCCTGCCC---TCCTGCC---------TCCCCAGACAGACC------------------TACGGGTGCCAGTGCCCCAGCCTCGCCTCCCCTGCAGCTCCCTCCTGGGCCAGGCGGAACACCATCGCTCCACAGTCCACTTACTGAGCTGAAA----AGACCTCCTCGtatgaagatctgggaa-ggcctgagctttcactggcctgcaagctcacaggc-gagcctgccgtggttgaa-ggacactggcagaagaccagagaccctggcccagggcaaaggactctgtcactcacggctcggcacattgct--gtgtgaa-----------------cgagcttcctcttca----ctcccgtttcctttgctccccaaaccccacaggggctacgcagaggc----ccaag--tggattgtgtgg--cacag-ggggtttgcttcaccaccgaggatccccgcgcttaggaaacgctggtctctcatgagtggctgcgaagcaaacctgcccaacctt------tccc---ggggtagacgttatctttgttacacgggacagcgagcaaatctcccttctgccccagagggaggcactgtccctgtgcgccaagact-ttcactgtatacacatccttgac--aagagtccagaacaaaaggcc-----atcggcgcgtctgctcctgagacttgcagaaatgtgggaaaccagt--gaaaaactgtctcctgacaTCCGAGACCCAGAG-----GAAACCCAGGC-CAACGGGCACAGGGTGCTGGCT----------TTTTCCGCTGCCGTAGGTTTCAC----------CTCGGGTG------------------CCATCTACCCCCGTTCCCCAGGTCTCCAT
i ponAbe2.chr3             C 0 C 0
s chlSab2.chr15               483147  931 -  91754291 ccttcctgcc--CCTCAGGAAGCCCTGCCCAGGTCCCCT--------------GGAGGCC------TGCACACTC-CCCAGAGCAGGCCCCTCCTCACACTGCCCCAGGGACTCCTCCCCAAG---GCTTCCTTCTT----CAGGGAAG-----------------------------AGGTGGCT--------------------------------C------------TTGGTCAG------------------------------------------GGAGCTGT---------TGGGGCTGTTTCCGAC-----------CCAGGCGAACCTTCGCTTCCTTTCCTGCCC---TCCTGCCCCGGGTTTTTCCGGAGACAGACC------------------TGCAGGTGCCAATGCCCCAGCCTCACCTCCCCCGCAGCTCCCTCCTGGGCCAGGCTGAACGCCGTCGCTCCACAGTCCACTCACTGAGCTGAAA----AGACCTCCTCGTGTGAAGATCT----------------------GGcctgcaagctcacaggc-gagcctgccgtggttgaa-ggccgctggcagcagaccggagaccctcgtccagagcaaaggactctgtcactcacggcacggcacgttgctcagtgggaa-----------------caaacttcctcttca----ctcccgtttcctttgctccccgaactccacaggggctatgcagaggc----ccaag--tggattctgcgg--c-cgg-tgggtttgcctcacctccgagggtccctgtgcttaggaag-gccagtctctcgtgaggggttgtgaagcaaacctgcccaacctt------tccc--gggggcagacgttttctttactatactgaacagcaagcaaatctcccttctgtcccagagggagacatggtccccgtccgccaagact-ttcactatataaacgtccttgacaagagagtccagaacaaaaggcc-----gtcagcgcatgtgctcctgagacttgcagaaatgtgggaaaccggt--gaaaaattgcctcccgacaTCCGGGACCCAGAG-----GAAACCCAGGC-CGATGGGCACAGGTTGCTGGAT----------TTTTCCGCTGCCGTCGGTTTCAC----------CTCAGGTA------------------CCATCTACCTCCGTCCCGCAGGTCTCCGT
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               993134  869 -  74750902 CCTACCTGCC--CCTCAGGAAG-------------CCCT--------------GGAGGC--------ACCTGCTTGCCCGGAGGAGGCCCTTCCTCACATTGCTCCAGGGATTCCTCCCCGAG---GTTTCCTTCTT----CGGGGAAG-----------------------------AGGAGACT--------------------------------C------------TTGCTGGG------------------------------------------GGAGTTGT---------CAGGGCTGTTTCTAAG-----------CCAGGCAAACCTTGACTTCCTTACCCGCCT---TCCTGCCCTGGGTTTCTCT-CGCACAGACC------------------CATGGGTGCCTGGGGCCCAGCCTCTTCTCCCCCGCAGCTCCCTCCTGGGTCAGCCTGAACACCATCGCTTCAC-GTCC----------------------ACCTCCTGTtatcaagatctgggaa-ggcctgagctttcccccacctgcaggctgtcaagc-gagcctgccacggttgagtggacactggcagaagacaagagaccccgggtcagagccgagggctccaggactcacagcacg---cgctgttcggtgcgaa-----------------tgaacttcctcttca----catcagtgcccttcgctcctcaaaccccac-ggggccacgcagaggcag--ctacg--tggactgaatga--cgtgg-tgggtttgcctcgccga---------------------------ggtctctca---------gcgggg----cctgcccagcctttctttctccc--ggtggtacatgctgtcttcattccatagaacagcaagcagatctc-cttctgccccagagggggacactgacgccgtccgccaagcct-ttcactagataaacatccttgaccagagagtccagatcaaaaggcc-----ggcagcgcatctgctcctgagacttgcagaaatgagggaaaccaat--gaaaacttgtctcccaacaTCCGAG--CCACAG-----CACACCCAGCC-CAGCGGGCGCAGGCTGCTGGC-----------TTTTCCTC----------TTTAC----------CCCAGGTG------------------TAGCC--ACCCCGTGGCCCAGGCCTCCAT
i calJac3.chr17            C 0 C 0
s mm10.chr16                65483101 1050 -  98207768 CCTTCTCACCCACCTCAGGAAGCTTGGGCCAGGTCCCCTTTACCACTacacacaaacaca------cacacacacacaca---cacacacacacTCATGATGCCCCAGGGATTCC-CTCTGGG---TCTTCCTTCTCCTTACAGGGAAG-----------------------------AGAAAGTTTGCAATGATGGCCTTTTGTGGTCATCACTCTCC------------TTGGCTGGTCTCCAAAGAGCCTCTGGGTTTGACTGAAGTTTAAGCAATACAGAGTAGT---------TGTGGCACTATGAGACCAGCCTGGTCTCCAGTCAGCCCTTAACTTCCTTACCTA------TTCCACCCTAG---TCTTTACAGAGAACCC------------------CAGAGGTGCCGGGTGTCCAGGCTTGCC-CACTTGCAG-------CTGGAT--------------TTACTTCACTGTCTGACAACTGGCCTGAAAACACAGACCGATGGAtgccaacaaccatgaagggtctgatattatatccactagtgaactaacaagc-tggcctgccacagttttacagatgttagcaaa----caaaaaaccataacaagaacaaag-------ccactcacagca-gaccctgggttagaggcaaagcgatttgttacagccgctaacatcagcttcagggttcattggttcctctgctacttg-----ccctgagacaatacagaggcaggcccaga--tgtgttctatgagccaaag-tgagcttacatcccagc------tacccaggct--aggaacaccaatatcttatctacagctataaaacaaacctgtccaacctt------ttccccagagctaaacgatatctctgtgctgttggacagtaaacagatcagcctcctg-cacaaagggagacactg-ccttgtcttccaatgct-ctcgctgtatgaacattctgg----aagatcccaaaacaaaaggacaaaatgtcaatgcatttgttcttaaaatttgcagaaatgtgattgagttgtagaaaaaaatgtctcccaacaTCCAGGAGCCAGGG-----AAGACCAAGGCTCCATTAGCATGAGCTGTTGGCT----------CTTTCCCTGTCTCTGGCTTTCGTGAGTGGCTCACACAGGTA------------------TCACAGAACCCCTTTCCTCAAGCCACCAT
i mm10.chr16               I 464 I 2568
s canFam3.chr33             29122266  913 +  31377067 CCACCCAGCT--CCC---AAAGCTCTGACAAGGCCCCCA--------------GAAAACCTCCAGGTACCTGCTGCTGGGGAGGAGGACAGCCCTCCCGCCGTCCCAGGGGATCCTGCCTCAGCCTGCTTCCCCCCA----CAGCCAGGGCTCCATCTCCGCTCCCCCAGGTGCTCACAGGTGCCT--------------------------------CCGGTGCGCTGCACTGTGCAG------------------------------------------AGGCTTGTTCATCAGGCTGCAGCTTTTTCTATC---------TTCCAGGCA--CCTTAGCTTCCTTACCTGCTCAGGTACTGCC---------------TGCAGCCC------------------CCCAGGTGCCCAGAGCTCCCCTTCGCCTTCCTCTT--CCCCCTCCCAGACTGTCCTGAGCACCG-CGCTTCCCGGGCCATTTACTGAGCTGAAAACACATACCTGCCCGTG------------------------------------------TCACAGACAGGGCCTGCCACAGTGTCACGGGTGCTGGCGGGAGACCTGAGG---------AGAGCTGA--------------ACCTCAGGTCGGGTAGTCGGGTGTCGG------------------------CCGCCTTG---------------------------AGcccccagaggccacacggaggc----gccggcctgggctctgca---cacac-cgtgcttg--tcccaactgagaaaccctaagcttaggaca-gtcggatctttttaagaggctgccagg-aaacctgcccagcgtt------tcct-tggaggtaaacatcctctttatgatacgggacagccagcaaatctg-cttctg------------------tctctgtccctcaaagctgtcccccacccaaacacccttgaaaagatagtctagagcaaaaggcc-----aacggtatttctgctcctgagacttgtaaaaacatgag--actggt--ggaggactgtctcccaacaTCTGAGATccggcggggccgaggcccgggt-ccgcgggcgggggTCGTCACCTGCACCCCGTCAGCTCCGCCCCC------CACGC----------CGTAGGTGGGCCCGGTGACTCCCTCAGCACCACACCCCCCTTCCCGGGtctccgc
i canFam3.chr33            C 0 C 0
e nomLeu3.chr11            120951918 1779 + 123690457 M

a score=18934.000000
s hg38.chr3_KI270935v1_alt    196124 17 +    197351 GGCCAGCACAGGGCCCG
s panTro4.chr3             199833057 17 + 202329955 GGCCAGCACAGGGCCCG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199846523 17 + 202140232 GGCCAGCACAATGCCCG
i ponAbe2.chr3             C 0 C 0
s chlSab2.chr15               484078 17 -  91754291 GGCCAGCACACGGCCCG
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               994003 17 -  74750902 GGCCAGCACAGTGCCTG
i calJac3.chr17            C 0 I 128
s canFam3.chr33             29123179 16 +  31377067 -accagcgcagtgcccg
i canFam3.chr33            C 0 N 0
e mm10.chr16                65484151 2568 -  98207768 I
e nomLeu3.chr11            120951918 1779 + 123690457 M

a score=49667.000000
s hg38.chr3_KI270935v1_alt    196141 63 +    197351 AAatgagaccgctcataaataactgaaaaaatcacacttacctcagattgtaccctactatgt
s panTro4.chr3             199833074 63 + 202329955 AAatgaaaccactcataaataattgaaaatttcacacttacctcaaattgtaccctactatgt
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199846540 63 + 202140232 AAatgaaactgcccataaataattgaaaaattcacacttacctcaaattgtaccctactatgt
i ponAbe2.chr3             C 0 C 0
s chlSab2.chr15               484095 63 -  91754291 AAatgaaactgctcataaataattgaaaaattcacacttacctcaaattgtaccctgctatgt
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               994148 63 -  74750902 aaatgaaactgctcataaataattgcaaaattcacactttgctcaaattgtaccccactctgt
i calJac3.chr17            I 128 C 0
e mm10.chr16                65484151 2568 -  98207768 I
e nomLeu3.chr11            120951918 1779 + 123690457 M

a score=60968.000000
s hg38.chr3_KI270935v1_alt    196204 115 +    197351 caatcatgttggaacaaattagcgtttctgaaacaagagttatggcagaagtgactgCGATGTTCCGATGTTTCTAGGTGTTGGCACGGATACTGTTC----GGTCCCAACCCCAGGAG
s panTro4.chr3             199833137 115 + 202329955 caatcatgttggaacaaattagcgtttctgaaacaagagttacagcagaagtgactgCGATGTTCCGATGTTTCTAGGTGTTGGCACGGATACTGTTC----GGTCGCAACCCCAGGAG
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199846603 115 + 202140232 caatcatgttggaacaaattagcttttctgaaacaagagttatagcagaagtaactgCAATGCTCTGACGTTTATAGGTGTTGGCACAGATACTGTTC----GGTCGTAACCCCAGGAG
i ponAbe2.chr3             C 0 C 0
s chlSab2.chr15               484158  71 -  91754291 cagtcatgttgcaacaaattagcgtttctgaaacaagagctagagcagaagtgac-----------------tCTAGCT-------------------------------CACCGGGAG
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               994211 118 -  74750902 caatcacactggaacaaatgagtgtttctgaaacaagagtcatagcagaagtgcctTCAGTGTTCTGGGGTGTAGCAGTGTTGCCACGTGTACTGTTCACA-GTAATCATCCCCGGGGG
i calJac3.chr17            C 0 C 0
s mm10.chr16                65486719 106 -  98207768 cgatcttgctggaacaa------gtttgtgaactgagagctatagctgcactgac-----tgGTCTAATGTTCAAAAGGATTGACTCAG--ACTGCTGCCATCACACTAACCCTGTGAG
i mm10.chr16               I 2568 C 0
e nomLeu3.chr11            120951918 1779 + 123690457 M

a score=381242.000000
s hg38.chr3_KI270935v1_alt    196319 345 +    197351 GTAGTTACTGGGAGCCATTCTGAGGAGGGAGTGCTGAGGACTCCCCTCAACAAGGGGCTGTGGCCAAGGAAAGGGGCCCTGAGAGACCTCACACAGAGCCCCCCAGTCG----CATA----CGGCACGGCTGAACTCTCCTGGCTTCCCAGAGAATCCAGAAGGAA--------AGGGCGGCCTCC------------------------------CGCAGCCCCCGCCAGCCAGCTCAGGGGCAGACGGCCTAGTGGGGCCCTTGCCCAGCCACCCGCCTATCTATTGGCTAAAAAAATGTAAAAACAAAAATCACTCTTCCCATACTACTCTTTTTCTCCTTCCCTCTTTTTAAAATCCTGTTTTTGCTTTTGTTCATTGAC---AGCAGCC
s panTro4.chr3             199833252 344 + 202329955 GTAGTTACTGGGAGCCATTCTGAGGAGGGAGTGCTGAGGAC-CCCCTCAATAAGGGGCTGTGGCCAAGGAAAGGGGCCCTGAGAGACCTCACACAGAGCCCACCGGTCG----CATA----CGGCGCGGCTGAACTCTCCTGACTTCCCAGAGAATCCAGAAGGAA--------AGGGCGGCCTCC------------------------------CGCAGCCCCGGCCAGCCAGCTCAGGGGCAGACGGCCTAGTGAGGCCCTTGCCCAGCCACCCGCCTATCTATTGGCTAAAAAAATGTAAAAACAAAAATCACTCTTCCCATACTACTCTTTTTCTCCTTCCCTCTTTTTAAAATCCTGTTTTTGCTTTTGTTCATTGAC---AGCAGCC
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199846718 344 + 202140232 GTAGTTACTGGGAGCCATTCTGAGGAGGGAGTGCTGAGGACCCCCCTCAATAAAGGGCTGTGGCCAAGGAAAGGGATCCTGAGAGACCTCACACAGAGTCCACCGTTCA----CATA----CGGTGCGGCTGAACTGTCCTGGCTTCCCAGAGAATCCAGAAGGCA--------AGGGCGGCCTCC------------------------------CACAGCCCCCGCCAGCCAGCTCAGGGGCAGACAGCCTAGTGGGG-CCTTGCCCAGCCACCCACCTATCTATTGGCTAAAAAAGTGTAAAAACAAAAATCACTCTTCCCGTACTACTCTTTTTCTCCTTCCCTCTTTTTAAAATCCTGTTTTTGCTTTTGTTCATTGAC---AGCAGCC
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120953697 344 + 123690457 GTAGTTACTGGCAGCCATTCTGAGAAGGGAGTGCTGAGGACCCCCGTCAATAAGGGGCTGTGACCAAGGAAAGGGGCCCTGTGAGACCTCATACAGAGTCCACCGTTCG----CATA----CGGCGCGGCTGAACTCTCCTGGCTTCCCAGAGATTCCAGAAGGAA--------AGGAT-GCCTCC------------------------------CACAGCCCCCACCAGCCAGCTCAGGGGCAGACGGCCTAGTGGGGCCCTTGCCCAGCCACCCACCTGTCTATTAGCTAAAAAAGTGTAAACACAGAAATCACCCTTCCTGTACTACTCTTTTTCTCCTTCCCTCTTTTTAAAATCCTGTTTTTGCTTTTGTTCATTGAC---AGCAGCC
i nomLeu3.chr11            M 1779 C 0
s chlSab2.chr15               484229 344 -  91754291 GTAGTTCCTGGGAGCCCTTCTGAGGAGGGAGTGCTGAGGACCCCCCTCCATAAGGGGCTGTGGCCAAGGAAA-GAACCCCGAGAGGCCTCACACAGAGTCCACCGTTCG----CACT----CGGCGCAGCTGAACTCTCCAGGCTTCCCAGAGAATCCAGAAGGAA--------AGGGCCACCTCC------------------------------CACAGCCCCAGCCAGCCAGCTCAGGGGCAGACGGCCTAGTGGGGCCCCTGCCCAGCCACCCACCTAACCACTGGCTTTAAAAATGTAAAAACAAAAATCACTCTTTTCGCACTACTCTTTTTCTCCTTCCCTCTTTTTAAAATCTTGTTTTTGCTTTGGTTCACTGAC---AGCAGCC
i chlSab2.chr15            C 0 C 0
s calJac3.chr17               994329 310 -  74750902 --AGTTACTGGCAGCCATTCCCAGGAGGGA-TGCTGAGGACCCGCCCCAGTGAGGGGCTGTGGCCGAGGAAAGGGACTCTGAGAGA-----------------------------------CGGCGTGGCTGAGCTCTCCAGGCTTCCCAGAGGATCCAGAAGGAA--------AGCGCTGCCTCC------------------------------CATGGCCCCCGCCAGCCTGCTCA-GGGCACGCTGCCTCATGGGCCCCTTGCCCAGCCGCCCACCTGCCGGCTG---AAGAAAACGTAAAAAGCGAAATTACCCTTCCTGGACTACTCTTTCTCT-CTCCCCTCTTTAAAAAACCCTGTTTTTGCTTTTGTTCACTGAC---AGCTGCC
i calJac3.chr17            C 0 C 0
s mm10.chr16                65486825 326 -  98207768 GAAGTTTCTGTGAG--ATTCTAAAGAGCAAGGGGTGGGGACCCACCTATGTGAGG-----------AGGAA-------CTGTGAGA--------AGAACCAACCGTGCAAGTTCATAAACTCTGCATGGCCTAACTTTCAAGGCCTCCCAGAGAATCCGTAAGTAACTAATACTAAGGTGTCCGCCAACCCAAcccaccccgcaccccatccccatccccacccccaccc-ccaccccATAGCCAGCCTGCCTATCAATATACTTGTCCA--------TCAATCAGCTAGTTAG----------------------------CCAAACTGC-CTCTGCGTCTTTCCCTCTTTTTATACTAC--TTCTTGCTTTGGTTCAGTGACCAAAGCAGCC
i mm10.chr16               C 0 N 0

a score=249768.000000
s hg38.chr3_KI270935v1_alt    196664 252 +    197351 TAAAAAGTGTTCTTCCTCATATATGGGAGTTAAttctttttg-tttt--tttgagacggagtctcactcttgtcactgaggctggagtgcagtggtgtgatctcagctcactgcaacctccacctcccaggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggcgtgtgccaccacccccagctaattttttgtattttttg-------------tagagacggggtttcaccacgttggccaggatggtct
s panTro4.chr3             199833596 251 + 202329955 TAAAAAGTGTTCTTCCTCATATATGGGAGTTAAttctttttg-tttt--tttgagacggagtctcactc-tgtcactgaggctggagtgcagtggtgtgatctcagctcactgcaacctctgcctcccaggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggcgtgtgccaccacccccggctaattttttgtattttttg-------------tagagacggggtttcaccacgttggccaggatggtct
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199847062 251 + 202140232 TAAAAAGTGTTCTTCCTCATATATGGGAGTTAAttctttttg-tttt--tttgagatggagtgtcactc-tgaatcccaggctggagtgcagtggtgtgatctcagctcactgcaacctccgcctcccgggttcaagtgattctcctgcctcagcctcctgagtagctgggattacaggcgtgtgccaccacgcccggctaattttttgtatttttag-------------tagagatggggtttcaccatgttgaccagtctggtct
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120954041 249 + 123690457 TAAAAAGTGTTCTTCCTCATATATGGGAGTTAAttctttttg-tttt--tttgaaacggagtctcactc-tgtcacccaggctggagtgca-tggtgcgatctcaactcactgcaacctccgcctcctgggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggcatgtgccaccatgcccagccaa-tttttgtattttctg-------------tagagacggggtttcgccatgttggccaggatggtct
i nomLeu3.chr11            C 0 C 0
s chlSab2.chr15               484573 251 -  91754291 TAGCAAGAGTTCTTCCTCGTATACAAGGGTTAAttctttttgttttt--tttgagacggagtcttgctc-tgttgcccaggctggagtgcagtggcacaatctcagctcactgcaagctccgtctccctggttcacgccattctcctgcctcagcctcctgagtagctggggctacaggtgcccaccaccatgcctggctaa-tttttgtatttttag-------------tagagacggggtttcaccatgttggccagaatgatct
i chlSab2.chr15            C 0 N 0
s calJac3.chr17               994639 258 -  74750902 TAAC-AGTGTTCTGTTTCATATATGGAAGCCAAttctttttt-tttttctttgaggtggaatcctgctc-tgttgcccaggcttgagggcagtggcgtgatctccgttcacggaaacctccacctcccaggttcaagtgattctcctgcctcagcctcccaagtagctgacattataggcacccaccactacccccagctaa-tttctgtatttttaaatttctattttttttgaaacagagtctagctctgttccctaggc------
i calJac3.chr17            C 0 C 0

a score=140599.000000
s hg38.chr3_KI270935v1_alt    196916 246 +    197351 tgaact------cctgatctcaaggctcactgcaacttctgcctcccgggttcaagggattctcctgcctcagccttctgagtagctgggagtacaggcctgtgccaccacgccaggcc-aatttttgta-ttttcagtagagacggggtttcaccatgttggccaggatggtctcaatctcttgacctca---tgatcctcccacctcggcctcccaaaatgctgggattaca-gcgtgagtcactgtgcccagcct
s panTro4.chr3             199833847 246 + 202329955 tgaact------cctgatctcaaggctccctgcaacttccgcctcccgggttcaagggattctcctgcctcagccttctgagtagctgggagtacaggcctgtgccaccatgcccggcc-AAtttttgta-ttttcagtagacacggggtttcaccatgttggccaggatggtctcaatctcttgacctca---tgatcctcccacctcggcctcccaaagtgctgggattaca-gcgtgagtcactgtgcccagcct
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199847313 247 + 202140232 tgaact------cctgatctcaaggctcactgcaacctccacctcccaggttcaaggaattctcctgcctcagcctcctgagtagctgggattacaggtgcccgccaccacgcccggcc-aattttttta-ttttcagtagagacggggtttcaccatgttggccaggctggtctcaatctcttgacctca---gcatcctcccacctcggcctcccaaagtgctgggattacaggcgtgagtcactgtgcccagcct
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120954290 216 + 123690457 caatct------cttgacctcatg----------------------------------atcctcccacctcggcctcccaaaatgctgggattacaggcgtgagccaccgcacccagcctattttttgta-tttctggtagagacggagtttcaccgtctggtctggtctggtctgaaacttttgacctcaag-tgatccaccagcgttggcctcccaaaatgctgggattataggcgtgagccaccgcacccggccT
i nomLeu3.chr11            C 0 C 0
s calJac3.chr17               994897 254 -  74750902 tgaagtgcatggcacaatctca--gctcattgcaacctctgcctccctggttcaagcgattct-cggcctcagcctcctgagtagctgggactacaggcatctgccactacaccccact-aatttttgtattttttagtagagatggggtttcaccattttagtcaggctggtctccaactcctggcctcaggttgatctgtctgcctcggcctccccaagtgctggggttacaggcgtgagccactgcacccggccT
i calJac3.chr17            C 0 N 0

a score=726.000000
s hg38.chr3_KI270935v1_alt    197162 2 +    197351 aa
s panTro4.chr3             199834093 2 + 202329955 aa
i panTro4.chr3             C 0 C 0
s ponAbe2.chr3             199847560 2 + 202140232 aa
i ponAbe2.chr3             C 0 C 0
s nomLeu3.chr11            120954506 2 + 123690457 GA
i nomLeu3.chr11            C 0 N 0

a score=48424.000000
s hg38.chr3_KI270935v1_alt    197164 187 +    197351 tttttgtatttctggtagagatggggtttcaccgtctggtctggtctgaaactcctgacctcaagtgatccaccggcattggcctcccacaatgctgggattacaggcgtgagccaccgtgcccggccTGACGCGGTGAAAGTCTGAAGATTCTACATCTACTCCTTCAAATTTACTTCTAGGAATT
s panTro4.chr3             199834095 187 + 202329955 tttttgtatttctggtagagatggggtttcaccgtctggtctggtctgaaactcctgacctcaagtgatccaccggcattggcctcccacaatgctgggattacaggcgtgagccaccgtgcccggccTGACGCGGTGAAAGTCTGAAGATTCTACATCTACTCCTTCaaatttacttctaggaatt
i panTro4.chr3             C 0 N 0
s ponAbe2.chr3             199847562 187 + 202140232 tttttgtatttctggtagagactgggtttcaccgtctggtctggtctgaaactccagacctcaagtgatccgccagggttggcctcccaaaatgctgggattataggcgtgagccactgcacccggccTGACATGGTGaaagtcttaagattctacatctactccttaaaatttacttctaggaatt
i ponAbe2.chr3             C 0 N 0

