##maf version=1 scoring=roast.v3.3
a score=733289.000000
s hg38.chr4_KI270925v1_alt         0 278 +    555799 GAATTCACTACCAAAAAAAACAATTTAAAAATCCACCACCACTACCATTACCTTCCT----ACATGCGCGcacacacacacacacacacacacacacacacacGTCAACTTAAAGTACATAAAATCCTGAGTACTCCTAGGCTTCTGGTAACAATACTGGCTGCTGGATAGGAAAGT-AAAGGGGGTGAGGCGCTCTGGgagggttagcctggagacagttgaaggcttgaatggcaag-tcggacggc-ttggctgcaaccccggctctgtgacttccctgatg
s panTro4.chr4             192697503 273 + 193495092 GAATTCACTACCAAAAAAACCAATTTAAAAATCCACCACCACTACCATTACCCTCCT----ACATGTGCGcacgcacacacacacacacacacacac------GTCAATTTAAAGTACATAAAATCCTGAGTACTCCTAGGCTTCTGGTAACAATACTGGCTGCTGGATAGGAAAGT-AAAGGGGGTGAGGCGCTCTGGgagcgttagcctggagacagttgaaggcttgaatggcaaggtcggacggc-ttggctgcaaccccggctctgtgacctccctgatg
i panTro4.chr4             N 0 C 0
s ponAbe2.chr4             197808080 266 + 198332218 GAATTCACTACCAAAAAAA-CAATTTAAAAATCCACCACCACTACCATTACCTTCCT----acatg------cacacacacacacacacacacacac------GTCAATTTAAAGTACATAAAATCCTGAGTACTCCTAGGCTTCTGGTAACAATACTGGCTGCTGGATAGGAAAGT-AAACGGGgtgaggcgctctgggagcattagcctggagacaggtgaaggcttgaatggcaaggtcggatggc-ttggctgcaactccggctctgtgacctccctgatg
i ponAbe2.chr4             N 0 C 0
s nomLeu3.chr7b            113579741 252 + 115148730 GAATTTGCTACCAAAAAAA---ATTTAAAAATCCACTACCACTACCATTATCTTCTT--------------------ACACACACACACACACGGAC------ATCAATTTAAAGTACATAAAATCCTGAGGACTCCTAGGCTTCTGGTAACAATAC--GCTGCTGGATAGGAAAGT-AAAGGGGGTGAGGCGCTCTGGGAGCATTAGCCTGGAGACAGTTGAAGGCTTGAATGGCAAGGTTGgacggc-ttggctgaaaccctggctctgtgacctccctgatg
i nomLeu3.chr7b            N 0 C 0
s rheMac3.chr5             183407279 260 + 184069350 GAATTCACTACCAAAAAA--CAATTTAAAAATCCACCACCACTACCATTGCCTTCCT--------------acacacacacacacacacacacacac------GTCAATTTAAAGTACATGAAATCCTGAGTGCTCCTAGGCTTCTAGTAACA--ACTGGCCGCTGGATAGGAAAGT-AAAGTGGGTGAGGCTGTCTGGGAACGTCAGCCTGGAGACAGCTGAAGGCTTGAATGGCAAGgtcagacagctttggctggaaccccagctctgtgccctccctgatg
i rheMac3.chr5             N 0 C 0
s macFas5.chr5             188787230 270 + 189454096 GAATTCACTACCAAAAAA--CAATTTAAAAATCCACCACCACTACCATTGCCTTCCT----acacacacacacacacacacacacacacacacacac------GTCAATTTAAAGTACATGAAATCCTGAGTGCTCCTAGGCTTCTAGTAACA--ACTGGCCGCTGGATAGGAAAGT-AAAGTGGGTGAGGCTATCTgggagcgtcagcctggagacagctgaaggcttgaatggcaaagtcagacagctttggctggaaccccagctctgtgccctccctgatg
i macFas5.chr5             N 0 C 0
s papAnu2.chr5             178214550 248 + 178775436 GAATTCACTaccaaaaaa--caatttaaaaatccaccaccactaccattgccttcct--------------------------acacacacacacac------gtcaattTAAAGTACATGAAATCCTGAGTGCTCCTAGGCTTCTAGTAACA--ACCGGCTGCTGGATAGGAAAGT-AAAGTGGGTGAGGCTATCTGAGAGCGTCAGCCTGGAGACAGCTGAAGGCTTGAATGGCAAGGTCAGACAGCTTTGGCTGGAACCCCAGCTCTGTGCCCTCCCTGATG
i papAnu2.chr5             N 0 C 0
s chlSab2.chr7             135155497 274 + 135778131 GAATTCACTACCAAAAAA--CAATTTAAAAATCCACCACCACTACCATTGCCTTCTTacacacacacacacacacacacacacacacacacacacac------GGCAATTTAAAGTACATGAAATCCTGAGTGCTCCTAGGCTTCTAGTAACA--ACCGGCTGCTGGATAGGAAAGT-AAAGTGGGTGAGGCTATCCGGGAGCATCAGCCTGGAGACAGCTGAAGGCTTGAATGGCAAGgtcagacagctttggctggaaccccggctctgtgccctccctgatg
i chlSab2.chr7             N 0 C 0
s calJac3.chr3             190321742 229 - 190850796 GAATTCACTACAAAAATAAAAACCTTAAAAATCCATCACCACTGCCAT-------------------------------------------------------GTCAATTTAAAGTACATAAAATCCTGAGTACTCCTGGGCTTCTGGTAACAATATTGGCTGCTGGTTGGGAGAGT-AAAGGGGGTGAGGCTACCCGAGAGCATCGGCCTGGAGACAGCTGAGGGCTGCAATGGCGAGGTCAGATAGCACTGGTTGACACCTCAGCTTTATGACCTCCCTGACA
i calJac3.chr3             N 0 C 0
s canFam3.chr16             17731939 266 -  59632846 GAATTCACT---AGAAATTTCAGTTTAAAAAAAT----CCACCTTTATTACCTTCCT--CAacacacacacacacacacacacacacacacacacac------aTAATTTTAAATT--TTGAAATCCTGAGTACTCCTAAGTTTCTATT-ACAATATAAACTGCTAGGTAGGGAGATCAAGGAGGATGAGTATATTTGGATACATTAGCC-GGAGATAGTTGAAGTTTTgaattttgaaattagatagacttcattcaaattcaggctctgtgacatccctgaca
i canFam3.chr16            N 0 I 1692

a score=137993.000000
s hg38.chr4_KI270925v1_alt       278 45 +    555799 tttgactttgagcaagtttccatgcccctctaatatgggagtaac
s panTro4.chr4             192697776 45 + 193495092 tttgactttgagcaagtttccatgcccctctaatatgggagtaac
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197808346 45 + 198332218 tttgactttgagcaagtttccatgcccctctaatatgggagtaac
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113579993 45 + 115148730 tttgactttgagcaagtttccatgcccctctaacatgggagtaat
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183407539 44 + 184069350 tttgactttgagcaagtttccgtgcccc-ctagtatgggagtaac
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188787500 44 + 189454096 tttgactttgagcaagtttccgtgcccc-ctagtatgggagtaac
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178214798 45 + 178775436 tttgactttgagcaagtttCCGTGCCCCTCTGGTATGGGAGTAAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135155771 44 + 135778131 tttgactttgagcaagtttccgtgcccc-ctagcatgggagtaac
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190321971 45 - 190850796 TTTGActgtgtgcaagtttccacgaccatctgatacgggagtaat
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17733897 45 -  59632846 tttaaattaaaaaaatttTCCAAGTCTTTtaaatatgggagtagt
i canFam3.chr16            I 1692 C 0

a score=621405.000000
s hg38.chr4_KI270925v1_alt       323 206 +    555799 ggtaatgtctgtcct----gtagt------gtaaggattgaatggattaaatcaaaag-taaaagtttataaaagtgtctagcatataaacagcacttggttaagctattgctaatattattTCCACTGTTT----------------------TAAGTGTTTAACTTTATGCCAAATGACTGA---TTTTTTAA-GCAA-TTCAAACATTTTTA--TCATTTTG----------------------------------------------------AAAGACTGACATTTTCCAGAT
s panTro4.chr4             192697821 206 + 193495092 gggaatgtctgtcct----gtagt------gtaaggattgaatgggttaaatcaaaag-aaaaagtttataaaagtgcctagcatataaacagcacttggttaagctattgctaatattattTCCACTGTTT----------------------TAAGTGTTTAACTTTATGCCAAATGACTGA---TTTTTTAA-GCAA-TTCAAACATTTTTA--TCATTTTG----------------------------------------------------AAAGACTGACATTTTCCAGAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197808391 207 + 198332218 ggtaatgtctgtcct----gtagt------gtaaagattgaatgggttaaataaaaag-aaaaagtttagaaaagtgcctagcatataaccagcactcggttaatCTATTCCTAATATTATTTCCACTGTTT----------------------TAAGTGTTTAACTGTATGCCAAATGACTGA--TTTTTTTAA-ACAA-TTCAAACATTTTTA--TCATTTGG----------------------------------------------------AAAGACTGACATTTTCCAGAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113580038 204 + 115148730 ggtaatgtctgttct----gtagc------gtaaggattgaatgggttaaatcaaaag-aaaaagtttagaaaagtgcctagcatataatcagcactcagttaagctattgctaatattatCTCCACTGTTT----------------------TAAGTGTTTAACTTTATGCCAAATGACTGA--TTTTTTTAA-GCAA-TTCAAACATTTTTA--TCATTTTG----------------------------------------------------AAAGACT---ATTTTCCAGAT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183407583 258 + 184069350 ggtaatgtctgtcta----gtagt------gtaaggattgaatgggttaaatcaaaag-aaaaactttagaaaagtgcctagcatgtaatcagcactcagttaagctattgctaatgttattTCCACTGTTT----------------------TAAGTGTTTAACTTTATGTCAAATTGCTGA--TTTTTTTAATGCAA-TCCAAACATTTTTA--TCATTTTGAAAGAC--ACATTTTCCAGATTACATAAATTATGTTCTCATTTATCATTTTAAAAGACTGACATTTTCCAGAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188787544 258 + 189454096 ggtaatgtctgtcta----gtagt------gtaaggattgaatgggttaaatcaaaag-aaaaactttagaaaagtgcctagcatgtaatcagcactcagttaagctattgctaatgttattTCCACTGTTT----------------------TAAGTGTTTAACTTTATGTCAAATTGCTGA--TTTTTTTAATGCAA-TCCAAACATTTTTA--TCATTTTGAAAGAC--ACATTTTCCAGATTACATAAATTATGTTCTCATTTATCATTTTAAAAGACTGACATTTTCCAGAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178214843 281 + 178775436 GGTAACGTCTGTCTA----GTAGT------GTAAGGACTGAATGggttaaatcaaaag-aaaaactttagaaaagTGCCTAGCATGTAATCAGCACTCAGTTAAGCTATTGCTAATGTTATTTCCACTGtttttaactttaacttttttaaacataagtgtttaactttatgtcaaattgctga-ttttttttaatgcaa-tccaaacattttta--tcattttgaaagaC--ACATTTTCCAGATTGCATAAATTATGttctcatttatcattttaaaagactgacaTTTTCCAGAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135155815 258 + 135778131 ggtaacatctgtcta----gtagt------gtaaggattgaatgggttaaatcaaaagaaaaaactttagaaaagtgcctagcatgtaatcagcgctcagttaagctattgctaatattattTCCACTGTTT----------------------TAAGTGTTTAACTTTATGTCAAATTGCTGA---TTTTTTAATGCAA-TTCAAACATTTTTA--TCATTTTGAAAGAC--ACATTTTCCAGATTGCATAAATTATGCTCTCATTTGTCATTTTAAAAGACCGACATTTTCCAGAT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190322016 257 - 190850796 gaaaatgtctatcct----gtagt------gtaaggatggaatgcattaaattaaaa--aaaaagtttggaaaagtgccgggcatataataagcactcaatcaagctattgttaatatAATTTCCACTGTTT--------------------------TGTTTAACTTTATGTCAAATTGCTGAGTATTTTTTAATGCGA-TTTAAACATTTTTA--TCATTCTGAAAGACTGACATTTTCCAGATTGCATAAATTGTACTCTCCTTTATCATTCTGAAAGATTGACATTTTCCAGAT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87401937 218 - 129401213 GGGAATGCCTGTTCT----GTGGTGTGCTAGTGAAGACTAGGTGACCTAATCCCTAAG-AAGAAATGTCTGAGAGATGAAAGCACTGCATCA-CAGTCAACTGAGTCACTATTACTGTTGTTACCACTGTAT----------------------TCATTATTTAGCTTTCGGTCAAATTGTTGA-GCTTCTAAAATATAAGTTAAAAGATTATTATGTCACTTTGAATGGT--ACATT-------------------------------------------------Atttttgagac
i mm10.chr8                N 0 I 147
s canFam3.chr16             17733942 197 -  59632846 agcaatatttatccttacagtgtt------ataaggattatgtgggttaa----tgaa-aatgagtttaaaaaaggttttggcacatagtaagcacttaTTTAGATCACTGTTACTATTA---CTACTCTTT--------------------------TATTTAACTTAATGTCAAATTAGTGT---TGTTTTAATGCAA-CTCAAAA---CTTA--TCATTTTG----------------------------------------------------AAAGATAGGCATTTTTCAGAT
i canFam3.chr16            C 0 C 0

a score=47181.000000
s hg38.chr4_KI270925v1_alt       529 14 +    555799 TGCATAAATTGTGT
s panTro4.chr4             192698027 14 + 193495092 TGCATAAATTGTGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197808598 14 + 198332218 TGCATAAAATGTGT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113580242 14 + 115148730 TGCATAAATTGTGT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183407841 14 + 184069350 CACATAAATTGTGT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188787802 14 + 189454096 CACATAAATTGTGT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178215124 14 + 178775436 CACATAAATTGTGT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135156073 14 + 135778131 CACATAAATTTTGT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190322273 14 - 190850796 TGCATAAATTGTGT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17734139 14 -  59632846 TGCCTAAATTGTGT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87402155 147 - 129401213 I

a score=88453.000000
s hg38.chr4_KI270925v1_alt       543 29 +    555799 TGTCAAGCACACATTGGcacaccacacat
s panTro4.chr4             192698041 29 + 193495092 TGTCAAGcacacactggcacaccacacat
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197808612 29 + 198332218 TGTCAAacacacactggcacaccatacat
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113580256 29 + 115148730 TGTCAAGcacacactggcacaccacacat
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183407855 29 + 184069350 TGTCAAGCACACACTAGCACACCacacat
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188787816 29 + 189454096 TGTCAAGcacacactggcacaccacacat
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178215138 29 + 178775436 TGTCAAGcacacactggcacaccacacat
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135156087 29 + 135778131 TGTCAAGcacacactggcacaccacacgt
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190322287 29 - 190850796 TTTCATATGCACACTGGCACACCACACAT
i calJac3.chr3             C 0 I 8
e mm10.chr8                 87402155 147 - 129401213 I
e canFam3.chr16             17734153  0 -  59632846 C

a score=45022.000000
s hg38.chr4_KI270925v1_alt       572 22 +    555799 acacacgcacactcacacacat
s panTro4.chr4             192698070 22 + 193495092 acacacgcacactcacacacat
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197808641 18 + 198332218 acacatgcacacacacac----
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113580285 22 + 115148730 acacatgcacacacacacacac
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183407884 22 + 184069350 acacatgcacattcacacacac
i rheMac3.chr5             C 0 I 1
s macFas5.chr5             188787845 22 + 189454096 acacatgcacattcacacacac
i macFas5.chr5             C 0 I 1
s papAnu2.chr5             178215167 22 + 178775436 acacatgcacattcacacacac
i papAnu2.chr5             C 0 I 1
s chlSab2.chr7             135156116 22 + 135778131 acacatgcacattcacacacac
i chlSab2.chr7             C 0 I 64
e mm10.chr8                 87402155 147 - 129401213 I
e canFam3.chr16             17734153  0 -  59632846 C
e calJac3.chr3             190322316  8 - 190850796 I

a score=1430.000000
s hg38.chr4_KI270925v1_alt       594 13 +    555799 cacaca-actcagt
s panTro4.chr4             192698092 14 + 193495092 cacacacactcagt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197808659 12 + 198332218 --cacacactcagt
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113580307 14 + 115148730 accacacacacact
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183407907  6 + 184069350 --cataca------
i rheMac3.chr5             I 1 C 0
s macFas5.chr5             188787868  6 + 189454096 --cataca------
i macFas5.chr5             I 1 C 0
s papAnu2.chr5             178215190  6 + 178775436 --cataca------
i papAnu2.chr5             I 1 C 0
e mm10.chr8                 87402155 147 - 129401213 I
e canFam3.chr16             17734153  0 -  59632846 C
e calJac3.chr3             190322316  8 - 190850796 I
e chlSab2.chr7             135156138 64 + 135778131 I

a score=39150.000000
s hg38.chr4_KI270925v1_alt       607 34 +    555799 cacacactca--------cacacataca-------------------------------------c---cacacat----acgcac
s panTro4.chr4             192698106 30 + 193495092 cacacac------------acacataca-------------------------------------c---cacacat----acgcac
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197808671 34 + 198332218 cacacac------------tcacacaca-------------------------------------c---cacacatacacacgcac
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113580321 46 + 115148730 cacatatgcacacacactcacacacaca-------------------------------------c---cacacatacacatgcac
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183407913 34 + 184069350 catacacttg--------cacacacaca-------------------------------------c---cacacat----acacac
i rheMac3.chr5             C 0 I 93
s macFas5.chr5             188787874 34 + 189454096 catacacttg--------cacacacaca-------------------------------------c---cacacat----acacac
i macFas5.chr5             C 0 I 33
s papAnu2.chr5             178215196 71 + 178775436 catacacttg--------cacacacacacacaccacacatacacacacacgcatacacacacactc---cacacat----acacac
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135156202 37 + 135778131 cacacactca--------cacacacaca-------------------------------------cgtgcacacat----acacac
i chlSab2.chr7             I 64 C 0
e mm10.chr8                 87402155 147 - 129401213 I
e canFam3.chr16             17734153  0 -  59632846 C
e calJac3.chr3             190322316  8 - 190850796 I

a score=17822.000000
s hg38.chr4_KI270925v1_alt       641 10 +    555799 actcacacac
s panTro4.chr4             192698136 10 + 193495092 actcacacac
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197808705 10 + 198332218 actcacacac
i ponAbe2.chr4             C 0 I 8
s nomLeu3.chr7b            113580367 10 + 115148730 actcacacac
i nomLeu3.chr7b            C 0 I 46
s macFas5.chr5             188787941 10 + 189454096 actcgcacac
i macFas5.chr5             I 33 I 5
s papAnu2.chr5             178215267 10 + 178775436 actcgcacac
i papAnu2.chr5             C 0 I 5
s chlSab2.chr7             135156239 10 + 135778131 actctcacac
i chlSab2.chr7             C 0 I 25
e mm10.chr8                 87402155 147 - 129401213 I
e canFam3.chr16             17734153  0 -  59632846 C
e calJac3.chr3             190322316  8 - 190850796 I
e rheMac3.chr5             183407947 93 + 184069350 I

a score=7721.000000
s hg38.chr4_KI270925v1_alt       651 17 +    555799 ca----gtcacac------tcatacac
s panTro4.chr4             192698146 23 + 193495092 cacacagtcacac----actcacacac
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197808723 23 + 198332218 cacacagtcacac----actcacacac
i ponAbe2.chr4             I 8 C 0
s nomLeu3.chr7b            113580423 27 + 115148730 cacacactcacacgcacactcacacac
i nomLeu3.chr7b            I 46 C 0
s macFas5.chr5             188787956 17 + 189454096 ----cacccacac----atacacac--
i macFas5.chr5             I 5 I 1
s papAnu2.chr5             178215282 17 + 178775436 ----cacccacac----atacacac--
i papAnu2.chr5             I 5 I 1
e mm10.chr8                 87402155 147 - 129401213 I
e canFam3.chr16             17734153  0 -  59632846 C
e calJac3.chr3             190322316  8 - 190850796 I
e chlSab2.chr7             135156249 25 + 135778131 I
e rheMac3.chr5             183407947 93 + 184069350 I

a score=10122.000000
s hg38.chr4_KI270925v1_alt       668 5 +    555799 cacac
s panTro4.chr4             192698169 5 + 193495092 cacac
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197808746 5 + 198332218 cacac
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113580450 5 + 115148730 cacac
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188787974 5 + 189454096 cacac
i macFas5.chr5             I 1 C 0
s papAnu2.chr5             178215300 5 + 178775436 cacac
i papAnu2.chr5             I 1 C 0
s chlSab2.chr7             135156274 5 + 135778131 cacac
i chlSab2.chr7             I 25 C 0
e mm10.chr8                 87402155 147 - 129401213 I
e canFam3.chr16             17734153 0 -  59632846 C
e calJac3.chr3             190322316 8 - 190850796 I
e rheMac3.chr5             183407947 93 + 184069350 I

a score=5986.000000
s hg38.chr4_KI270925v1_alt       673 6 +    555799 at--acac
s panTro4.chr4             192698174 6 + 193495092 at--acac
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197808751 6 + 198332218 at--acgg
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113580455 6 + 115148730 at--acac
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188787979 4 + 189454096 at----ac
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178215305 8 + 178775436 atacacac
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135156279 6 + 135778131 at--acac
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17734153 6 -  59632846 AT--acac
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87402155 147 - 129401213 I
e calJac3.chr3             190322316 8 - 190850796 I
e rheMac3.chr5             183407947 93 + 184069350 I

a score=23502.000000
s hg38.chr4_KI270925v1_alt       679 49 +    555799 acgcac-------tcacacaca-cataca------cacccaca--tacaca---cacacgcacacaca
s panTro4.chr4             192698180 57 + 193495092 acgcacac-----tcacacaca-cataca--tacacacccacacatacaca---cacacgcacacaca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197808757 49 + 198332218 acac---------tcacacata-cccaca------catacacacactcaca---cacgcgcacacaca
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113580461 64 + 115148730 acgcacactcacaccacacaca-ctcacacccatatacacacacctacaca---cacctacacacaca
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188787983 55 + 189454096 actc---------tcacacact-catacacccactcacacacacgcacaca---tacacatgcacaca
i macFas5.chr5             C 0 I 2
s papAnu2.chr5             178215313 55 + 178775436 actc---------tcacacact-cacacacccactcacacacacccacaca---tacacatgcacaca
i papAnu2.chr5             C 0 I 2
s chlSab2.chr7             135156285 59 + 135778131 atgc---------acacacaccgcacaaacacatgcacatacacacacacactccacacatacacaca
i chlSab2.chr7             C 0 I 1
s mm10.chr8                 87402302 49 - 129401213 GTGC---------TTTCAAACA-CAGaga------gagagagagagagaga---cagacagacagaca
i mm10.chr8                I 147 C 0
s canFam3.chr16             17734159 10 -  59632846 ---------------acacact-cac------------------------------------------
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190322316  8 - 190850796 I
e rheMac3.chr5             183407947 93 + 184069350 I

a score=10714.000000
s hg38.chr4_KI270925v1_alt       728  54 +    555799 ccacacatacacacgcaga-------------------------catacgcaca--------------ca----------------------ct--------cacacacacagtctcacaca----c
s panTro4.chr4             192698237  50 + 193495092 ccacacatac----gcaga-------------------------catacgcaca--------------ca----------------------ct--------cacacacacatagtcacaca----c
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197808806  54 + 198332218 gcacacatacacaggcaaa-------------------------catacgcaca--------------ca----------------------ca--------ctcacacacatagtcacaca----c
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113580525  87 + 115148730 ccacacatacacacgcacactgacacacacacaccacacatacgcatatgcaca--------------ca----------------------ctcgcgtgcacacacacacagacacacaca----t
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183408040  62 + 184069350 ccacgcacacacacgcaca----catac-----ccatg------cacacacaca--------------------------------------ca--------ctctcacacactctcacaca----c
i rheMac3.chr5             I 93 C 0
s macFas5.chr5             188788040 109 + 189454096 ccacacacacacgcacaca----tacacacactccaca------catacacatactctcacacacactcatgcacacacacacacactcacaca--------ctctcacacactctcacacacactc
i macFas5.chr5             I 2 C 0
s papAnu2.chr5             178215370  85 + 178775436 --ccacacacacgcacaca----tacacacactccaca------catacacacactcacacacacactca----------------------ca--------ctcacacacactctcacacacactc
i papAnu2.chr5             I 2 C 0
s chlSab2.chr7             135156345  62 + 135778131 tcacacacactcatgcaca----cacac-----tcaca------cacactcata--------------ca----------------------ca--------atcacacacactctcaca------c
i chlSab2.chr7             I 1 C 0
s mm10.chr8                 87402351  49 - 129401213 -gacagacaggcaggcaga-------------------------cagacagaca--------------ca----------------------ca--------cacacacacacacacac--------
i mm10.chr8                C 0 C 0
s canFam3.chr16             17734169  12 -  59632846 -------------------------------------------------------------------------------------------------------tcacacacacag------------
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190322316   8 - 190850796 I

a score=1088183.000000
s hg38.chr4_KI270925v1_alt       782 321 +    555799 acacatacacacgcacactcacaTTTTGGGTCACTGCATTAATTCCATATGATATCTAAGAAGCATTTG-C-CTCCAGTGAGTTACCATAACTCTTCCTCCCAGT-GAGCATTTTTCTAAAGAATTTATTACCATTTGCGAGG-AAAGAGTCCCCACATGATACATCATTTCAACTTCTGATTGAAAAACAATTGCTACATTTAAGCATGAATATGTAACTTGTGGTAGTGATTATGAGGGGTGA-------CCTAGTTTCATGAAAAAGCACCCCATTATTTTGTTTCTGCTTACAA---AAAGTATCAGAAAAGTC-AGGGACCATTAAGTAAA
s panTro4.chr4             192698287 313 + 193495092 acacatacacacgcaca------TTTTGGGTCACTGCATTAATTCCATATGATACCTAGGAAGCATTTG-A-CTCCAGTGAGTTACCATAACTCTTCCTCCCGGT-GAGCATTTTTCTAAAGAATTTATTACCATTTGCGAGG-AAAGAGTCCCCACATGATACATCATTTCAACTTCTGATTGAAAAACAATTGCTACATTTAAGCATGAATATGTAACTTGTGGTAGTGATT--GAGGGGTGA-------CCTAGTTTCATGAAAAAGTACCCCATTATTTTGTTTCTGCTTACAA---AAAGTATCAGAAAAGTC-AGGGACCATTAAGTAAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197808860 315 + 198332218 acacacgcacactcaca------TTTTGGGTCACTGCATTAATTCCATATGATATCTAAGAAGCATTTG-A-CTCCAGTGAGTTACTATAACTCTTCCTCCCGGT-GAGCATTTTTCTAAAGAATTTATTACCATTTGCGAGG-AAAGAGTCCCCACATGATACATCATTCCAACTTCTAATTGAAAAACAATTGCTACGTTTAAGCATGAATATGTAACTTGTGGTAGTGATTATGAGGGGTGA-------CCTAGTTTCATGAAAAAGTACCCCATTATTTTGTTTCTGCTTACAA---AAAGTATCAGAAAAATC-AGGGACCATTAAGTAAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113580612 314 + 115148730 acacaagcacactcaca------TTTTGGGTCATTGCATTAATTCCATATGATATCTAAGAAGCATTTG-A-TTCCAGTGAGTTGCCAGAACTCTTCCTCCAGGT-GAGCATTTTTCTAAATAATTTATTACCATTTGCAAGG-AAAGAGTCCCCACATGATACATCATTCCAACTTCTGATTGAAAAACAATTGCTACATTTAAGCATGAATATGTAACTTGTGGTAGTGATTATG-GGGGTGA-------CCTAGTTTCATGAAAAAGTACCCCATTATTTTGTTTCTGCTTCCAA---GAAGTATCAGAAAAGTC-AGGGACCATTAAGTAAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183408102 314 + 184069350 acgcacgcacactcaca------cTTCAGGTCATTGCATTAATTCCATATGATGTCTAAGCAGCATGTG-A-CTCCACTGAGTCACCATAACTCTTCCTCCCCGG-GAGCATTTTTCCAAATAATGTATTCCCATTTGTGAGG-AAAGAGTCCCCACATGATGCATTATTCCAACTTCTGATTGAAAAACAATTGCTACATTTAAGCATGAATATGCAACTTGTGGTAGTGATTACGAGGGGTGA-------CCTCATTTCATGATAAAGCACCCCATTATTTTGCTTCTGCTTACAA----AAGTATCAGAAAGGTC-AGGGACCATTAGGTTAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188788149 314 + 189454096 actcacgcacactcaca------cTTCAGGTCATTGCATTAATTCCATATGATGTCTAAGCAGCATGTG-A-CTCCACTGAGTCACCATAACTCTTCCTCCCCGG-GAGCATTTTTCCAAATAATGTATTCCCATTTGTGAGG-AAAGAGTCCCCACATGATGCATTATTCCAACTTCTGATTGAAAAACAATTGCTACATTTAAGCATGAATATGCAACTTGTGGTAGTGATTACGAGGGGTGA-------CCTCATTTCATGATAAAGCACCCCATTATTTTGCTTCTGCTTACAA----AAGTATCAGAAAGGTC-AGGGACCATTAGGTTAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178215455 313 + 178775436 acgcacgcacactcaca------ctTCAGGTCATTGCATTAATTCCATATGATGTCTAAGCAGCATGTG-A-CTCCACTGAGTCACCATAACTCTTCCTCCCCGG-GAGCA-TTTTCCAAATAATGTATTCCCATTTGTGAGG-AAAGAGTCCCCACATGATGCATTATTCCAACTTTTGATTGAAAAACAATTGCTACATTTAAGCATGAATATGCAACTTGTGGTAGTGATCACGAGGGGTGA-------CCTCATTTCATGATAAAGCACCTCATTATTTTGCTTCTGCTTACAA----AAGTATCAGAAAGGTC-AGGGACCACTaggttaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135156407 315 + 135778131 acacatgcacactcaca------cTTCAGGTCACTGCATTAATTCCATATGATGTCTAAGCAGCATGTG-A-CTCCACTGAGTCACCATAACTCTTCCTCCCCAGTGAGCATTTTTCCAAATAATTTACTCCCATTTGTGAGG-AAAGAGTCCCCACATGATGCATCATTCCAACTTCTGATTGAAAAACAACTGCTACATTTAAGCATGAATATGTAACTTGTGGTAGTGATCACGAGGGGTGA-------CCTCATTTCATGATAAAGCACCCCATTATTTTGCTTCTGCTTACAA----AAGTATCAGAAAAGTC-AGGGACCATTAGGTTAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190322324 312 - 190850796 ACACAGCCACGCTCACA------TTTGGGGTCACCACATTAATTCCATATGATATCTAAGAAGCAAGGGAA-CTCCAGTGAGTTACCATAACTCTTCCTCCCCGT-GAGCATTTTTCTAAATAATTTATCACCATTT---AGG-AAAGAGTCCCCACATGATATATCATTACAACTTCTGATTGGAAAATGACTGTTACATTTAAGTGTGAATATGTAACTCGTGGCAATGACTGTGAGGGGTGA-------CCTAGTTCTATGAATAA-TACCCCATTATTTAGTTTCTGTTTACAA---AAAGTATCAGGAAAGTC-AGGGGCCATTAAGTAAA
i calJac3.chr3             I 8 C 0
s mm10.chr8                 87402400 309 - 129401213 ggacacacacacacaca------att-gtgtcattggattaatttcatatggtgtgtctaAAGTATTTA-ATTTCCTGGAAATCACCATAACCCATAATGCCTGT-AAGCATATTTCTATGAGATTTACTCCCATTAGTGATT---AGAGTCCTCAAGTGATAGAAAACTCCAGCTTCTTATTGAAAAAC-ATGGTTATTTTTCAGCATGCATATGCAATGAATGGTAATCATTATGAATGGAGA-------GGTGTTTTCTTG-------GCTTCATAAAATTGTTTCCATTTGTAAAAAAAAATACTTGAGAAGTCAAAAAACCATCAAGTGAA
i mm10.chr8                C 0 I 323
s canFam3.chr16             17734181 321 -  59632846 --acacgtacacacaca------ATTTGGGTCATCACATTAATTCTTTATTATATGTAAGAAGCATATGAA-TTCCAGTGAGTTACCATAAACTTTACTCCCTCT-GAGCATTTTTCTAGGGGAATTATTACCTTTTATGAGAAAAAGAGTCCCCATGTGGCATATTATTCCAGATTCTGATTGAAAAACAATTGCTAAATTTGAGCATGTATATGTAGCTTGAGGTAGTGATTATGAGTGGAGAGGCAACTTCTGGTTTCATAAAAAAGTGCCCCATTATTTTGTTTCCATTTTTAA---ATTGTACCAGGAAAGTC-AGGGGCCATTAAGGAA-
i canFam3.chr16            C 0 C 0

a score=1805570.000000
s hg38.chr4_KI270925v1_alt      1103 567 +    555799  
s panTro4.chr4             192698600 564 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197809175 562 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113580926 566 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183408416 569 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188788463 569 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178215768 577 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135156722 569 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190322636 560 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17734502 555 -  59632846  
i canFam3.chr16            C 0 I 190
e mm10.chr8                 87402709 323 - 129401213 I

a score=404381.000000
s hg38.chr4_KI270925v1_alt      1670 124 +    555799 AATATGTTGTGAATTTAACAAAATATTTCTTATTCAAATTATGTAATAAT---ACATTTTCAACTAAGATTCACTATCTGGAACTTCTGGGGCCTTCCAGAATAGCACTAGCATGTAATTAATAATA
s panTro4.chr4             192699164 124 + 193495092 AATATGTTGTGAATTTAACAAAATATTTCTTATTCAAATTATGTAATAAT---ACATTTTCAACTAAGATTCACTATCTGGAACTTTTGGGGCCTTCCAGAATAGCACTAGCATGTAATTAATAATA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197809737 124 + 198332218 AATATGTTGTGAATTTAACAAAATATTTCCTATTCAAATTATGTAATAAT---AAATTTTCAACTAAGATTCACTATCTGGAACTTTTGGGGCCTTCCAGAATAGCACTAGCATGtaattaataata
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113581492 124 + 115148730 AAAATGCTGTGAATTTAACAAAACATTTCTTATTCAAATTATGTAATAAT---ACATTTTCAACTAAGATTCACTATCTGGAACTTCTGAGGCCTTCCAGAATAGCACTAGCATGTAATTAATAAAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183408985 124 + 184069350 AATATGTTGTGAATTTAACAAAATATTTCTTATTTGAATTAGGTAATAAT---ACATTTTCAACTAATATTCACTATCTGGAACTTTTGGGGCCTTCCAGAATAGCACTAGCATGCAATTAATAATG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188789032 124 + 189454096 AATATGTTGTGAATTTAACAAAATATTTCTTATTTGAATTAGGTAATAAT---ACATTTTCAACTAATATTCACTATCTGGAACTTTTGGGGCCTTCCAGAATAGCACTAGCATGCAATTAATAATG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178216345 124 + 178775436 AATATGTTGTgaatttaacaatatatttcttatttgaaTTAGGTAATAAT---ACATTTTCAACTAATATTCACTATCTGGAACTTTTGGGGCCTTCCAGAATAGCACTAGCATGCAATTAATAATG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135157291 124 + 135778131 AATATGCTTTGAATTTAACAAAATGTTTCTTATTTGAATTAGGTAATAAT---ACATTTTCAACTAATATTCACTATCTGGAACTTTTGGGGCCTTCCAGAATAGCACTAGCATGAAATTAATAATG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190323196 122 - 190850796 AATACATTGGGAGTTTAACAAAACATTTCTTATTCAAATCGTGTAATAAC---AAATTTTCAACTAATATTCACTCTCTGG-ACTTTTGTCGCCTTCCAGAATAGCACCAG-ATGtaattaataatg
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17735247 123 -  59632846 aaTGTGTCATGAGTTAAACCAAATGTTTTTTATCCAGATTTTGGAATAATTAACAATTTTCAACTAATATTGACTAC----AATTTTCATGGTTTTTCAGAACAGCACCAGAATGTAGTTAATAGTG
i canFam3.chr16            I 190 C 0
e mm10.chr8                 87402709 323 - 129401213 I

a score=466457.000000
s hg38.chr4_KI270925v1_alt      1794 188 +    555799 AATAGGATGTTAAGATAT-----AATAATGATACATTTGTCCTCTTTGATTGAACACCAGTAACTCAAGACCTCTTTGATATGACAAAAGAACAAAAGAACCTGGGGAGAACACGTAAACCTAAGTTTGAAAATGAGCACGGATGTTCCTTACCTTCAACACAAACCCAGACAACAGCGGC--AGTGTGCGCGGC
s panTro4.chr4             192699288 180 + 193495092 AATAGGATGTTAAGATAT-----AATAATGATACATTTGTCCTCTTTGATTGCGCAACAGTAACCCAAGACCTCTTTGATATGACAAAAGAAC--------CTGGGGAGAACACGTAAACCTAAGTCTGAAAATGAGCACGGATGTTCATTACCTTCAACACAAACCCAGACAACAGCGGC--AGTGTGCGCGGC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197809861 180 + 198332218 aataaaatgttaagatat-----aataatGATACATTTGTCCCCTTTGACTGAGCAACAGTAACTCAAGACCTTTTTGATATGACAAAAGAAC--------CTGGGGAGAACACGTAAACCTAAGTTTGAAAATGAGCACGGATGTTCCTTACCTTCAACACAAACCCACACAACAGCGGC--AGTGTGCGTGGC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113581616 177 + 115148730 AATACGATGTTAAGAT--------ATAATGATACATTTGTCCCCTTTGACTGAGCAACAGTAACTCAAGACCTCTTTGATATGACAAAAGAAC--------CTGGGGAGAACACGTAAACCTAATTTTGAAAATGAGCAGGGATGTTCCTTACCTTTAACACAAACCCAGACAACAGCGGC--AGTGTGCGTAGC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183409109 180 + 184069350 AATAGGATGTTAAGATAT-----AATAATGATACATTTGTCCCCTTTGATTGAGCAACAGTAACTCAAGACCTCTTTGATATGACAAAAGAAC--------CTGTGGAGAACACGTAAACCTAAGTTTGAAAATGAGCAAGGATGTTCCTTACCTTTAACACAAACCCAGACAACAGCAGC--AGTGTGTGTGAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188789156 180 + 189454096 AATAGGATGTTAAGATAT-----AATAATGATACATTTGTCCCCTTTGATTGAGCAACAGTAACTCAAGACCTCTTCGATATGACAAAAGAAC--------CTGTGGAGAACACGTAAACCTAAGTTTGAAAATGAGCAAGGATGTTCCTTACCTTTAACACAAACCCAGACAACAGCAGC--AGTGTGTGTGAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178216469 182 + 178775436 AATAGGATGTTAAGATAT-----AATAATGATACATTTGTCCCCTTTGATTGAGCAACAGTAACTCAAGACCTCTTCGATATGATAAAAGAAC--------CTGTGGAGAACATGTAAACCTAAGTTTGAAAATGAGCAAGGATGTTCCTTACCTTTAACACAAACCCAGACAACAACAGCAGAGTGTGTGTGAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135157415 180 + 135778131 AATAGGATGTTAAGATAT-----AATAATGATACATTTGTCCCCTTTGATTGAGCAACAGTAACTCAAGACCTCTTCGATATGACAAAAGAAC--------CTGTGGAGAACACGTAAACCTAAGTTTGTAAATGAGCAAGGATGTTCCTTACCTTTAACACAAGCCCAGACAACAGCAGC--AGTGTGTGTGAC
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17735370 181 -  59632846 AatgatatgatatgatatgataAAATAATTATATATCTTCCCCCTTTCATTGAGCAAACACAACTCAAGACCTTTAAGATGTGGCTAAAGGAT--------CTGTTGACAAC---TGAGTCTAAGTTTGGAAATAAG-AATCACATGCATTACCTTTAGCACAGATACACAGAACAGCAGT--CTTATGCTTTAA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87402709 323 - 129401213 I
e calJac3.chr3             190323318   0 - 190850796 C

a score=9373.000000
s hg38.chr4_KI270925v1_alt      1982 4 +    555799 CTCC
s panTro4.chr4             192699468 4 + 193495092 CTCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197810041 4 + 198332218 GTCC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113581793 4 + 115148730 CTCC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183409289 4 + 184069350 CTCC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188789336 4 + 189454096 CTCC
i macFas5.chr5             C 0 I 23
s papAnu2.chr5             178216651 4 + 178775436 CTCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135157595 4 + 135778131 CTCC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17735551 0 -  59632846 C
e calJac3.chr3             190323318 0 - 190850796 C

a score=2800.000000
s hg38.chr4_KI270925v1_alt      1986 1 +    555799 C
s panTro4.chr4             192699472 1 + 193495092 C
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197810045 1 + 198332218 C
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113581797 1 + 115148730 C
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183409293 1 + 184069350 C
i rheMac3.chr5             C 0 I 4
s macFas5.chr5             188789363 1 + 189454096 C
i macFas5.chr5             I 23 C 0
s papAnu2.chr5             178216655 1 + 178775436 C
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135157599 1 + 135778131 C
i chlSab2.chr7             C 0 I 4
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17735551 0 -  59632846 C
e calJac3.chr3             190323318 0 - 190850796 C

a score=443.000000
s hg38.chr4_KI270925v1_alt      1987 1 +    555799 G
s panTro4.chr4             192699473 1 + 193495092 G
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197810046 1 + 198332218 G
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113581798 1 + 115148730 G
i nomLeu3.chr7b            C 0 T 55
s macFas5.chr5             188789364 1 + 189454096 A
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178216656 1 + 178775436 A
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17735551 0 -  59632846 C
e calJac3.chr3             190323318 0 - 190850796 C
e chlSab2.chr7             135157600 4 + 135778131 I
e rheMac3.chr5             183409294 4 + 184069350 I

a score=36551.000000
s hg38.chr4_KI270925v1_alt      1988 30 +    555799 GCCCTTTACCTTCAACACAAACCCGGACAA
s panTro4.chr4             192699474 30 + 193495092 GCCCCTTACCTTCAACACAAACCCACACAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197810047 30 + 198332218 GCCCCTTACCTTCAACACAAACCCAGACAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113581744 30 + 115148730 GTTCCTTACCTTTAACACAAACCCAGACAA
i nomLeu3.chr7b            T 55 C 0
s macFas5.chr5             188789365 30 + 189454096 GCCCTTCACCTTTAACACAAACCCAGACAA
i macFas5.chr5             C 0 T 55
s papAnu2.chr5             178216657 30 + 178775436 GCCCTTCACCTTTAACACAAACCCAGACAA
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17735551  0 -  59632846 C
e calJac3.chr3             190323318  0 - 190850796 C
e chlSab2.chr7             135157600  4 + 135778131 I
e rheMac3.chr5             183409294  4 + 184069350 I

a score=2865.000000
s hg38.chr4_KI270925v1_alt      2018 2 +    555799 CA
s panTro4.chr4             192699504 2 + 193495092 CA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197810077 2 + 198332218 CA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113581774 2 + 115148730 CA
i nomLeu3.chr7b            C 0 I 23
s macFas5.chr5             188789340 2 + 189454096 CA
i macFas5.chr5             T 55 C 0
s papAnu2.chr5             178216687 2 + 178775436 CA
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17735551 0 -  59632846 C
e calJac3.chr3             190323318 0 - 190850796 C
e chlSab2.chr7             135157600 4 + 135778131 I
e rheMac3.chr5             183409294 4 + 184069350 I

a score=2788.000000
s hg38.chr4_KI270925v1_alt      2020 3 +    555799 GCG
s panTro4.chr4             192699506 3 + 193495092 GCG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197810079 3 + 198332218 GCG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113581799 3 + 115148730 GCG
i nomLeu3.chr7b            I 23 C 0
s macFas5.chr5             188789342 3 + 189454096 GTA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178216689 3 + 178775436 GCA
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17735551 0 -  59632846 C
e calJac3.chr3             190323318 0 - 190850796 C
e chlSab2.chr7             135157600 4 + 135778131 I
e rheMac3.chr5             183409294 4 + 184069350 I

a score=17990.000000
s hg38.chr4_KI270925v1_alt      2023 7 +    555799 GCAGTGT
s panTro4.chr4             192699509 7 + 193495092 GCAGTGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197810082 7 + 198332218 GCAGTGT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113581802 7 + 115148730 GCAGTGT
i nomLeu3.chr7b            C 0 T 65
s rheMac3.chr5             183409298 7 + 184069350 GCAGTGT
i rheMac3.chr5             I 4 C 0
s macFas5.chr5             188789345 7 + 189454096 GCAGTGT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178216692 7 + 178775436 GCAGTGC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135157604 7 + 135778131 GCAGTGT
i chlSab2.chr7             I 4 C 0
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17735551 0 -  59632846 C
e calJac3.chr3             190323318 0 - 190850796 C

a score=3414.000000
s hg38.chr4_KI270925v1_alt      2030 2 +    555799 GC
s panTro4.chr4             192699516 2 + 193495092 GC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197810089 2 + 198332218 GC
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183409305 2 + 184069350 GC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188789352 2 + 189454096 GC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178216699 2 + 178775436 AC
i papAnu2.chr5             C 0 T 101
s chlSab2.chr7             135157611 2 + 135778131 GC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17735551 0 -  59632846 C
e calJac3.chr3             190323318 0 - 190850796 C
e nomLeu3.chr7b            113581809 65 + 115148730 T

a score=9352.000000
s hg38.chr4_KI270925v1_alt      2032 11 +    555799 GCGGCCTCCCG
s panTro4.chr4             192699518 11 + 193495092 GCGGCCTCCCG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197810091 11 + 198332218 ATGGTGTCCCG
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183409307 11 + 184069350 ATGACCTCCCA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188789354 11 + 189454096 ATGACCTCCCA
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135157613 11 + 135778131 GTGACTTCCCA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17735551  0 -  59632846 C
e calJac3.chr3             190323318  0 - 190850796 C
e papAnu2.chr5             178216701 101 + 178775436 T
e nomLeu3.chr7b            113581809 65 + 115148730 T

a score=73192.000000
s hg38.chr4_KI270925v1_alt      2043 32 +    555799 GCCCTTTACCTTCAACACAAACCCGGACAACA
s panTro4.chr4             192699529 32 + 193495092 GCCCCTTACCTTCAACACAAACCCACACAACA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197810102 32 + 198332218 GCCCCTTACCTTCAACACAAACCCACACAACA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113581744 32 + 115148730 GTTCCTTACCTTTAACACAAACCCAGACAACA
i nomLeu3.chr7b            T 65 I 23
s rheMac3.chr5             183409318 32 + 184069350 GCCCTTCACCTTTAACACAAACCCAGACAACA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188789365 32 + 189454096 GCCCTTCACCTTTAACACAAACCCAGACAACA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178216600 32 + 178775436 GTTCCTTACCTTTAACACAAACCCAGACAACA
i papAnu2.chr5             T 101 C 0
s chlSab2.chr7             135157624 32 + 135778131 GCCCTTTACCTTTAACACAAACCCAGACAACA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17735551  0 -  59632846 C
e calJac3.chr3             190323318  0 - 190850796 C

a score=19467.000000
s hg38.chr4_KI270925v1_alt      2075 9 +    555799 GCGGCAGTG
s panTro4.chr4             192699561 9 + 193495092 GCGGCAGTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197810134 9 + 198332218 GCGGCAGTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113581799 9 + 115148730 GCGGCAGTG
i nomLeu3.chr7b            I 23 C 0
s rheMac3.chr5             183409350 9 + 184069350 ACAGCAGTG
i rheMac3.chr5             C 0 I 8
s macFas5.chr5             188789397 9 + 189454096 GCAGCAGTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178216632 9 + 178775436 ACAGCAGAG
i papAnu2.chr5             C 0 I 2
s chlSab2.chr7             135157656 9 + 135778131 GCAGCAGTG
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17735551 0 -  59632846 C
e calJac3.chr3             190323318 0 - 190850796 C

a score=18323.000000
s hg38.chr4_KI270925v1_alt      2084 11 +    555799 TGCGCGGCCTC
s panTro4.chr4             192699570 11 + 193495092 TGCGCGGCCTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197810143 11 + 198332218 TGCGTGACCTC
i ponAbe2.chr4             C 0 T 157
s nomLeu3.chr7b            113581808 11 + 115148730 TGCGTGACCTC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188789406 11 + 189454096 TGTGTGACCTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178216643 11 + 178775436 TGTGTGACCTC
i papAnu2.chr5             I 2 C 0
s chlSab2.chr7             135157665 11 + 135778131 TGTGTGACCTC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17735551  0 -  59632846 C
e calJac3.chr3             190323318  0 - 190850796 C
e rheMac3.chr5             183409359  8 + 184069350 I

a score=3000.000000
s hg38.chr4_KI270925v1_alt      2095 2 +    555799 CC
s panTro4.chr4             192699581 2 + 193495092 CC
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113581819 2 + 115148730 CC
i nomLeu3.chr7b            C 0 T 77
s macFas5.chr5             188789417 2 + 189454096 CC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178216654 2 + 178775436 CC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135157676 2 + 135778131 CC
i chlSab2.chr7             C 0 I 4
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17735551 0 -  59632846 C
e calJac3.chr3             190323318 0 - 190850796 C
e rheMac3.chr5             183409359 8 + 184069350 I
e ponAbe2.chr4             197810154 157 + 198332218 T

a score=67.000000
s hg38.chr4_KI270925v1_alt      2097 1 +    555799 G
s panTro4.chr4             192699583 1 + 193495092 G
i panTro4.chr4             C 0 C 0
s macFas5.chr5             188789419 1 + 189454096 A
i macFas5.chr5             C 0 I 23
s papAnu2.chr5             178216656 1 + 178775436 A
i papAnu2.chr5             C 0 T 57
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17735551 0 -  59632846 C
e calJac3.chr3             190323318 0 - 190850796 C
e chlSab2.chr7             135157678 4 + 135778131 I
e rheMac3.chr5             183409359 8 + 184069350 I
e nomLeu3.chr7b            113581821 77 + 115148730 T
e ponAbe2.chr4             197810154 157 + 198332218 T

a score=2615.000000
s hg38.chr4_KI270925v1_alt      2098 5 +    555799 GCCCT
s panTro4.chr4             192699584 5 + 193495092 GCCCC
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113581744 5 + 115148730 GTTCC
i nomLeu3.chr7b            T 77 C 0
s macFas5.chr5             188789443 5 + 189454096 GCCCT
i macFas5.chr5             I 23 C 0
s papAnu2.chr5             178216600 5 + 178775436 GTTCC
i papAnu2.chr5             T 57 C 0
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17735551 0 -  59632846 C
e calJac3.chr3             190323318 0 - 190850796 C
e chlSab2.chr7             135157678 4 + 135778131 I
e rheMac3.chr5             183409359 8 + 184069350 I
e ponAbe2.chr4             197810154 157 + 198332218 T

a score=34114.000000
s hg38.chr4_KI270925v1_alt      2103 27 +    555799 TTACCTTCAACACAAACCCGGACAACA
s panTro4.chr4             192699589 27 + 193495092 TTACCTTCAACACAAACCCACACAACA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197809997 27 + 198332218 TTACCTTCAACACAAACCCACACAACA
i ponAbe2.chr4             T 157 C 0
s nomLeu3.chr7b            113581749 27 + 115148730 TTACCTTTAACACAAACCCAGACAACA
i nomLeu3.chr7b            C 0 I 45
s macFas5.chr5             188789448 27 + 189454096 TCACCTTTAACACAAACCCAGACAACA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178216605 27 + 178775436 TTACCTTTAACACAAACCCAGACAACA
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17735551  0 -  59632846 C
e calJac3.chr3             190323318  0 - 190850796 C
e chlSab2.chr7             135157678  4 + 135778131 I
e rheMac3.chr5             183409359  8 + 184069350 I

a score=1947.000000
s hg38.chr4_KI270925v1_alt      2130 3 +    555799 GCG
s panTro4.chr4             192699616 3 + 193495092 GCG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197810024 3 + 198332218 GCG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113581821 3 + 115148730 GCC
i nomLeu3.chr7b            I 45 C 0
s macFas5.chr5             188789475 3 + 189454096 GCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178216632 3 + 178775436 ACA
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17735551 0 -  59632846 C
e calJac3.chr3             190323318 0 - 190850796 C
e chlSab2.chr7             135157678 4 + 135778131 I
e rheMac3.chr5             183409359 8 + 184069350 I

a score=29787.000000
s hg38.chr4_KI270925v1_alt      2133 20 +    555799 GC--AGTGTGCGCGGCCTCCCG
s panTro4.chr4             192699619 20 + 193495092 GC--AGTGTGCGCGGCCTCCCG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197810027 20 + 198332218 GC--AGTGTGCGTGGCGTCCCG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113581824 20 + 115148730 GC--AGTGTGCGTAGCCTCCCG
i nomLeu3.chr7b            C 0 T 100
s macFas5.chr5             188789478 20 + 189454096 GC--AGTGTGTGTGACCTCCCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178216635 22 + 178775436 GCAGAGTGTGTGTGACCTCCCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135157682 20 + 135778131 GC--AGTGTGCGTGACTTCCCA
i chlSab2.chr7             I 4 C 0
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17735551  0 -  59632846 C
e calJac3.chr3             190323318  0 - 190850796 C
e rheMac3.chr5             183409359  8 + 184069350 I

a score=56903.000000
s hg38.chr4_KI270925v1_alt      2153 32 +    555799 GCCCTTTACCTTCAACACAAACCCGGACAACA
s panTro4.chr4             192699639 32 + 193495092 GCCCTTTACCTTCAACGCAAACCCAGACAACA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197810047 32 + 198332218 GCCCCTTACCTTCAACACAAACCCAGACAACA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113581744 32 + 115148730 GTTCCTTACCTTTAACACAAACCCAGACAACA
i nomLeu3.chr7b            T 100 I 68
s macFas5.chr5             188789498 32 + 189454096 GCCCTTCACCTTTAACACAAACCCAGACAACA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178216657 32 + 178775436 GCCCTTCACCTTTAACACAAACCCAGACAACA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135157702 32 + 135778131 GCCCTTTACCTTTAACACAAACCCAGACAACA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17735551  0 -  59632846 C
e calJac3.chr3             190323318  0 - 190850796 C
e rheMac3.chr5             183409359  8 + 184069350 I

a score=16137.000000
s hg38.chr4_KI270925v1_alt      2185 9 +    555799 GCGGCAGTG
s panTro4.chr4             192699671 9 + 193495092 GCGGCAGTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197810079 9 + 198332218 GCGGCAGTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113581844 9 + 115148730 GCGGCAGTG
i nomLeu3.chr7b            I 68 C 0
s macFas5.chr5             188789530 9 + 189454096 ACAGCAGTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178216689 9 + 178775436 GCAGCAGTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135157734 9 + 135778131 GCAGCAGTG
i chlSab2.chr7             C 0 I 8
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17735551 0 -  59632846 C
e calJac3.chr3             190323318 0 - 190850796 C
e rheMac3.chr5             183409359 8 + 184069350 I

a score=2341.000000
s hg38.chr4_KI270925v1_alt      2194 3 +    555799 TGC
s panTro4.chr4             192699680 3 + 193495092 TGC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197810088 3 + 198332218 TGC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113581853 3 + 115148730 TGC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188789539 3 + 189454096 CAC
i macFas5.chr5             C 0 T 55
s papAnu2.chr5             178216698 3 + 178775436 CAC
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17735551 0 -  59632846 C
e calJac3.chr3             190323318 0 - 190850796 C
e chlSab2.chr7             135157743 8 + 135778131 I
e rheMac3.chr5             183409359 8 + 184069350 I

a score=8117.000000
s hg38.chr4_KI270925v1_alt      2197 10 +    555799 GCGGCCTCCC
s panTro4.chr4             192699683 10 + 193495092 GCGGCCTCCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197810091 10 + 198332218 ATGGTGTCCC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113581856 10 + 115148730 GTGACCTCCC
i nomLeu3.chr7b            C 0 T 120
s macFas5.chr5             188789487 10 + 189454096 GTGACCTCCC
i macFas5.chr5             T 55 C 0
s papAnu2.chr5             178216701 10 + 178775436 ATGAACTCCT
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17735551  0 -  59632846 C
e calJac3.chr3             190323318  0 - 190850796 C
e chlSab2.chr7             135157743  8 + 135778131 I
e rheMac3.chr5             183409359  8 + 184069350 I

a score=2476.000000
s hg38.chr4_KI270925v1_alt      2207 3 +    555799 GGC
s panTro4.chr4             192699693 3 + 193495092 GGC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197810101 3 + 198332218 GGC
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             188789497 3 + 189454096 AGC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178216711 3 + 178775436 GGC
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17735551 0 -  59632846 C
e calJac3.chr3             190323318 0 - 190850796 C
e chlSab2.chr7             135157743 8 + 135778131 I
e rheMac3.chr5             183409359 8 + 184069350 I
e nomLeu3.chr7b            113581866 120 + 115148730 T

a score=10901.000000
s hg38.chr4_KI270925v1_alt      2210 10 +    555799 CCTTTACCTT
s panTro4.chr4             192699696 10 + 193495092 CCTTTACCTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197810104 10 + 198332218 CCCTTACCTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113581746 10 + 115148730 TCCTTACCTT
i nomLeu3.chr7b            T 120 C 0
s macFas5.chr5             188789500 10 + 189454096 CCTTCACCTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178216714 10 + 178775436 TCTTTATCTT
i papAnu2.chr5             C 0 T 55
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17735551  0 -  59632846 C
e calJac3.chr3             190323318  0 - 190850796 C
e chlSab2.chr7             135157743  8 + 135778131 I
e rheMac3.chr5             183409359  8 + 184069350 I

a score=21809.000000
s hg38.chr4_KI270925v1_alt      2220 18 +    555799 CAACACAAACCCACACAA
s panTro4.chr4             192699706 18 + 193495092 CAACGCAAACCCACACAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197810114 18 + 198332218 CAACACAAACCCACACAA
i ponAbe2.chr4             C 0 I 22
s nomLeu3.chr7b            113581756 18 + 115148730 TAACACAAACCCAGACAA
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188789510 18 + 189454096 TAACACAAACCCAGACAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178216669 18 + 178775436 TAACACAAACCCAGACAA
i papAnu2.chr5             T 55 C 0
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17735551  0 -  59632846 C
e calJac3.chr3             190323318  0 - 190850796 C
e chlSab2.chr7             135157743  8 + 135778131 I
e rheMac3.chr5             183409359  8 + 184069350 I

a score=2255.000000
s hg38.chr4_KI270925v1_alt      2238 2 +    555799 CA
s panTro4.chr4             192699724 2 + 193495092 CA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197810154 2 + 198332218 CG
i ponAbe2.chr4             I 22 C 0
s nomLeu3.chr7b            113581774 2 + 115148730 CA
i nomLeu3.chr7b            C 0 I 90
s macFas5.chr5             188789528 2 + 189454096 CA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178216687 2 + 178775436 CA
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17735551 0 -  59632846 C
e calJac3.chr3             190323318 0 - 190850796 C
e chlSab2.chr7             135157743 8 + 135778131 I
e rheMac3.chr5             183409359 8 + 184069350 I

a score=23711.000000
s hg38.chr4_KI270925v1_alt      2240 25 +    555799 GCGGCAGTGTGCGCGGCCTCCCGGC
s panTro4.chr4             192699726 25 + 193495092 GCGGCAGTGTGCGCGGCCTCCCGGC
i panTro4.chr4             C 0 I 193
s ponAbe2.chr4             197810156 25 + 198332218 GCGGCAGTGTGTGTGGCTTCCTGGC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113581866 25 + 115148730 GCCGCAGTGTGCGTGACCTCCCGTC
i nomLeu3.chr7b            I 90 C 0
s macFas5.chr5             188789530 25 + 189454096 ACAGCAGTGCACATGAACTCCTGGC
i macFas5.chr5             C 0 T 133
s papAnu2.chr5             178216689 25 + 178775436 GCAGCAGTGCACATGAACTCCTGGC
i papAnu2.chr5             C 0 T 13
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17735551  0 -  59632846 C
e calJac3.chr3             190323318  0 - 190850796 C
e chlSab2.chr7             135157743  8 + 135778131 I
e rheMac3.chr5             183409359  8 + 184069350 I

a score=8151.000000
s hg38.chr4_KI270925v1_alt      2265 19 +    555799 GGCAGTGGGCGCGACCTCC
s ponAbe2.chr4             197810181 19 + 198332218 GGCAGTGTGCGTGACCTCC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113581891 18 + 115148730 -GTAGTGTGCGCGACCTCC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188789422 19 + 189454096 AGCAGTGTGCATGACCTCT
i macFas5.chr5             T 133 I 32
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17735551  0 -  59632846 C
e calJac3.chr3             190323318  0 - 190850796 C
e chlSab2.chr7             135157743  8 + 135778131 I
e papAnu2.chr5             178216714 13 + 178775436 T
e rheMac3.chr5             183409359  8 + 184069350 I
e panTro4.chr4             192699751 193 + 193495092 I

a score=15340.000000
s hg38.chr4_KI270925v1_alt      2284 27 +    555799 CGGCAGCAGTGGGCGCGACCTCCCGGC
s panTro4.chr4             192699944 26 + 193495092 CAGCGGCAGTGTGCGTGACCTCCCA-C
i panTro4.chr4             I 193 C 0
s ponAbe2.chr4             197810200 25 + 198332218 CGACGGCAGAGTGCGCGGCCTCCCG--
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113581909 26 + 115148730 CGGCGGCAGTGTGCGTGACCTCCCG-C
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188789473 27 + 189454096 CAGCAGCAGTGTGTGTGACCTCCCAGC
i macFas5.chr5             I 32 T 78
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17735551  0 -  59632846 C
e calJac3.chr3             190323318  0 - 190850796 C
e chlSab2.chr7             135157743  8 + 135778131 I
e papAnu2.chr5             178216714 13 + 178775436 T
e rheMac3.chr5             183409359  8 + 184069350 I

a score=2062.000000
s hg38.chr4_KI270925v1_alt      2311 8 +    555799 GGCAGTGG
s panTro4.chr4             192699970 8 + 193495092 GTCAGTGT
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113581935 8 + 115148730 CGTAGTGT
i nomLeu3.chr7b            C 0 T 134
s macFas5.chr5             188789422 8 + 189454096 AGCAGTGT
i macFas5.chr5             T 78 C 0
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17735551 0 -  59632846 C
e calJac3.chr3             190323318 0 - 190850796 C
e chlSab2.chr7             135157743 8 + 135778131 I
e papAnu2.chr5             178216714 13 + 178775436 T
e rheMac3.chr5             183409359 8 + 184069350 I
e ponAbe2.chr4             197810225 0 + 198332218 C

a score=15753.000000
s hg38.chr4_KI270925v1_alt      2319 35 +    555799 GCGCGACCTCCC---------------------------------GCGGCAGTGTGCGTGACCTCCC-A
s panTro4.chr4             192699978 35 + 193495092 GCGTGAACTCCC---------------------------------GCGGCAGTGTGCGTGACCTCCC-A
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197810225 23 + 198332218 ---------------------------------------------GCGGCAGTGTGCGTGACCTCCC-G
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113581809 36 + 115148730 GCGTGACCTCCC---------------------------------GCCGCAGTGTGCGTAGCCTCCCGG
i nomLeu3.chr7b            T 134 C 0
s macFas5.chr5             188789430 68 + 189454096 GCATGACCTCTCAGCCCTTCACCTTTAACACAAACCCAGACAACAGCAGCAGTGTGTGTGACCTCCC-A
i macFas5.chr5             C 0 T 174
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17735551  0 -  59632846 C
e calJac3.chr3             190323318  0 - 190850796 C
e chlSab2.chr7             135157743  8 + 135778131 I
e papAnu2.chr5             178216714 13 + 178775436 T
e rheMac3.chr5             183409359  8 + 184069350 I

a score=18857.000000
s hg38.chr4_KI270925v1_alt      2354 48 +    555799 CGTCAGTGTGCGTGAACTCCCG-CGGCAGTGTGCGTGACCTCCCACGTT
s panTro4.chr4             192700013 49 + 193495092 CGTCAGTGTGCGTGAACTCCCGGCGGCGGTGTGCGTGACCTCCCACGTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197810248 49 + 198332218 CGGCAGGGTGCGTGACCTCCCGGCGCCAGGGTGCGTGACCTCCCGCGGC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113581845 48 + 115148730 CGGCAGTGTGCGTGACCTCCCG-CCGCAGTGTGCGTGACCTCCCGTCGT
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17735551  0 -  59632846 C
e calJac3.chr3             190323318  0 - 190850796 C
e chlSab2.chr7             135157743  8 + 135778131 I
e papAnu2.chr5             178216714 13 + 178775436 T
e macFas5.chr5             188789498 174 + 189454096 T
e rheMac3.chr5             183409359  8 + 184069350 I

a score=32115.000000
s hg38.chr4_KI270925v1_alt      2402 41 +    555799 AGTGTGCGTGACCTCCCGGCGGCAGTGTGCGTGACCTCCCA
s panTro4.chr4             192700062 41 + 193495092 AGTGTGCGTGAACTCCCGGCGGCGGTGTGCGTGACCTCCCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197810297 41 + 198332218 AGGGTGCGTGACCTCCCGGCGCCAGGGTGCGTGACCTCCCG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113581893 41 + 115148730 AGTGTGCGCGACCTCCCGGCGGCAGTGTGCGTGACCTCCCG
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188789324 41 + 189454096 AGTGTGTGTGACCTCCCAGTAGCAGTGTGCATGACCTCCCA
i macFas5.chr5             T 174 I 177
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17735551  0 -  59632846 C
e calJac3.chr3             190323318  0 - 190850796 C
e chlSab2.chr7             135157743  8 + 135778131 I
e papAnu2.chr5             178216714 13 + 178775436 T
e rheMac3.chr5             183409359  8 + 184069350 I

a score=2079.000000
s hg38.chr4_KI270925v1_alt      2443 39 +    555799 CGTCAGTGTGCGTGAACTCCC-----------------------GCGGCAGTGTGCGTGACC
s panTro4.chr4             192700103 62 + 193495092 CGTCAGTGTGCGTGAACTCCCGCGGCAGTGTGCGTGACCTCCCGGCGGCAGTGTGCGTGACC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197810338 40 + 198332218 TGGTAGGGGGCGTGACCTCCC----------------------GGAGGCAATGTGCGTGACC
i ponAbe2.chr4             C 0 I 22
s nomLeu3.chr7b            113581934 11 + 115148730 CCGTAGTGTGC---------------------------------------------------
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17735551  0 -  59632846 C
e calJac3.chr3             190323318  0 - 190850796 C
e chlSab2.chr7             135157743  8 + 135778131 I
e papAnu2.chr5             178216714 13 + 178775436 T
e macFas5.chr5             188789365 177 + 189454096 I
e rheMac3.chr5             183409359  8 + 184069350 I

a score=3322.000000
s hg38.chr4_KI270925v1_alt      2482 40 +    555799 GCGTGGCGGCAGTGTACGTGGCCTACTGGCGGGAATGTGC
s panTro4.chr4             192700165 40 + 193495092 TCGTGGCGGCAGTGTGCGTGGCCTACTGGCGGCAATGTGC
i panTro4.chr4             C 0 C 0
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17735551  0 -  59632846 C
e calJac3.chr3             190323318  0 - 190850796 C
e chlSab2.chr7             135157743  8 + 135778131 I
e papAnu2.chr5             178216714 13 + 178775436 T
e macFas5.chr5             188789365 177 + 189454096 I
e rheMac3.chr5             183409359  8 + 184069350 I
e nomLeu3.chr7b            113581945  0 + 115148730 C
e ponAbe2.chr4             197810378 22 + 198332218 I

a score=2273.000000
s hg38.chr4_KI270925v1_alt      2522 28 +    555799 GTGACCTCCAGGCcctttacctttgcct
s ponAbe2.chr4             197810400 28 + 198332218 GTGACCTCCCGGACCTTTACCTTTGCCT
i ponAbe2.chr4             I 22 C 0
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17735551  0 -  59632846 C
e calJac3.chr3             190323318  0 - 190850796 C
e chlSab2.chr7             135157743  8 + 135778131 I
e papAnu2.chr5             178216714 13 + 178775436 T
e macFas5.chr5             188789365 177 + 189454096 I
e rheMac3.chr5             183409359  8 + 184069350 I
e nomLeu3.chr7b            113581945  0 + 115148730 C
e panTro4.chr4             192700205  0 + 193495092 C

a score=3842.000000
s hg38.chr4_KI270925v1_alt      2550 5 +    555799 gtgac
s panTro4.chr4             192700205 5 + 193495092 GTGAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197810428 5 + 198332218 GTGAC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113581945 5 + 115148730 GCGAC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188789542 5 + 189454096 ATGAA
i macFas5.chr5             I 177 C 0
s papAnu2.chr5             178216701 5 + 178775436 ATGAA
i papAnu2.chr5             T 13 C 0
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17735551 0 -  59632846 C
e calJac3.chr3             190323318 0 - 190850796 C
e chlSab2.chr7             135157743 8 + 135778131 I
e rheMac3.chr5             183409359 8 + 184069350 I

a score=612952.000000
s hg38.chr4_KI270925v1_alt      2555 253 +    555799 ctcccggccctttacc-tttgcctgtaactttcc-cAGATTGCTTGTAAGTACGTGCAACGCTTTAAGACGTGACTTAGATTCTTTCAAAAATGTAGACTCCCCCAGGAAATAACTACTTCATCT-----------TTTAGAATTGCACATAAATGATTTTTAAGATTCTTGAGTCTTCCAGAGTGG--GAGAACGCACAGAACTGGAAACCTCGGGGAGATGCGACAACCTTTGTGTCCACCCCACTTTGCTGTGAGCCAGTTCCCT-
s panTro4.chr4             192700210 250 + 193495092 CTCCTGGCCCTTTACC-TTTGCCTGTAACTTTCC-CAGATTGCTTGTAAGTACGTGCAACGCTTTAAGACGTGACTTAGATTCTTTCAAAAATGTAGACTCCCCCAGGAAATAACTACTTC---T-----------TTTAGAATTGCATATAAATGATTTTTAAGATTCTTGAGTCTTCCAGAGTGG--GAGAACGCACAGAACTGGGAACCTCGGGGAGATGCGACAACCTTTGTGTCCACCCCACTTTGCTGTGAGCCAGTTCCCT-
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197810433 253 + 198332218 CTTCTGGCCCTTTACC-TTTGCCTGTAACTTTCC-CAGATTGCTTGTAAGTACGTGCAACGCTTTAAGACATGACTTAGATTCTTTCAAAAATGTAGACTCCCCCAGGAAATAACTACTTCTTCT-----------TTTAGAATTGCGCATAAATGATTTTTAAGATTCTTGAGTCTTCCAGAGTGG--GAGAAGGCACAGAACTGGGAACCTCGGGGAGATGTGACAACCTTTGTGTCCACCCCACTTTGCTGTGAGCCAGTTCACT-
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113581950 253 + 115148730 CTCCCGGCCCTTTACCTTTTGCCTGTAACTTTCC-CAGCTTGCTTGTAAGTACGTGCAATGCTTTAAGACATGACTTAGATTCTTTCAAAAACGTACACT-CCCCAGGAAATAAGTACTTCATCT-----------TTTAGAATTGCGCATAAATGATTTTTAAGATTCTTGAGGCTTCCAGAGTGG--GAGAACGCACAGAACTGGGAACCTCGAGGAGATGCGACAACCTTTGTGTCCACCGCACTTTGCTATGAGCCAGTTCGCT-
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183409367 254 + 184069350 CTCCTGGCCCTTTATC-TTTGCCTGTAATTTTTC-TGGATTGCTTGTAAGTACGTGCAATGCTTTAATACATGACTTAGATTCTTTTAAAACTGTAGACTCCCCCAGGAAAGAACTACTTCACCT-----------TCTAGAATTGGGCAAAAATGATTTTCAGGATTCTTGAATCTTCCAGAGTGGGAGAGAACGCACAGACCTGGGAA-CTCGAGAAGATGCGACAACCTTTGTCTCCACCCCCCTTTGCTGTGAGCCAGTTTACT-
i rheMac3.chr5             I 8 I 12
s macFas5.chr5             188789547 254 + 189454096 CTCCTGGCCCTTTATC-TTTGCCTGTAATTTTTC-TGGATTGCTTGTAAGTACGTGCAATGCTTTAATACATGACTTAGATTCTTTTAAAACTGTAGACTCCCCCAGGAAAGAACTACTTCACCT-----------TCTAGAATTGGGCATAAATGATTTTCAGGATTCTTGAATCTTCCAGAGTGGGAGAGAACGCACAGACCTGGGAA-CTCGAGAAGATGCGACAACCTTTGTCTCCACCCCCCTTTGCTGTGAGCCAGTTTACT-
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178216706 254 + 178775436 CTCCTGGCTCTTTATC-TTTGCCTGTAATTTTTC-TGGATTGCTTGTAAGTACGTGCAATGCTTTGACACATGacttagattattttaaaactgtagaCTCCCCCAGGAAAGAACTACTTCACCT-----------TCTAGAACTGGGCATAAATGATTTTCAGGATTCTTGAATCTTCCAGAGTGGGAGAGAACGCACAGACCTGGGAA-CTCGAGAAGATGCGACAACCTTTGTCTCCACCCCACTTTGCTGTGAGCCAGTTTACT-
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135157751 255 + 135778131 CTCCTGGCCCTTTATC-TTTGCCTGTAATTTTTC-TGGATTGCTTGTAAGTACGTGCAATGCTCTAAGACATGACTTAGATTCTTTTAAAACTGTAGACTCCCCCAGGAAAGAACTACTTCATCT-----------TCTAGAATTGGGCATACATGATTTTCAGGATTCTTGAATCTTCCAGAGTGGGAGAGAACGCACAGACCTGGGAACCTCGAGAAGATGCGACAACGTTTGTCTCCACCCCACTTTGCTGTGAGACAGTTTACT-
i chlSab2.chr7             I 8 C 0
s canFam3.chr16             17735551 243 -  59632846 CTCTCAGCCCTTTATC-TTTGCCTATAACTTTTCTCATAAGTCTTGTAAACACATGTAA-GCTTTAGGACATTATTTGGATCACTTTAAAAATGTAGGCT-CTTCTGGAAACAAATACTTAATCTTTAAGTAGTTATTTAGAATTGAGTACGAATGATTTTTGAATTTTTTGATTTTTCCAGAGTGG----GGGTAAACAAAACT--AAACCTTGTCTAG-----------------TTTTCTCCATTTTACCATGAGCCAGTTCTGAT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87402709 323 - 129401213 I
e calJac3.chr3             190323318   0 - 190850796 C

a score=14720.000000
s hg38.chr4_KI270925v1_alt      2808 11 +    555799 CAGGAACAATG
s panTro4.chr4             192700460 11 + 193495092 CAGGAACAATG
i panTro4.chr4             C 0 I 2
s ponAbe2.chr4             197810686 11 + 198332218 CAGGAACAATG
i ponAbe2.chr4             C 0 I 2
s nomLeu3.chr7b            113582203 11 + 115148730 CAGGAGCAATG
i nomLeu3.chr7b            C 0 I 2
s macFas5.chr5             188789801 10 + 189454096 -AAGATCAGTA
i macFas5.chr5             C 0 I 2
s papAnu2.chr5             178216960 10 + 178775436 -AAGATCAGTA
i papAnu2.chr5             C 0 I 2
s chlSab2.chr7             135158006 10 + 135778131 -AAGATCAGTG
i chlSab2.chr7             C 0 I 2
s canFam3.chr16             17735794 11 -  59632846 AAGAAAAAATG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87402709 323 - 129401213 I
e calJac3.chr3             190323318  0 - 190850796 C
e rheMac3.chr5             183409621 12 + 184069350 I

a score=137415.000000
s hg38.chr4_KI270925v1_alt      2819 52 +    555799 --TAGCCCAGTGGTGTGCCCTGTGT---TTACTGCTGAAAATTCAGGAGAGAAACAA
s panTro4.chr4             192700473 52 + 193495092 --TAGCCCAGTGGTGTGCCCTGTGT---TTACTGCTGAAAATTCAGGAGAGAAACAA
i panTro4.chr4             I 2 C 0
s ponAbe2.chr4             197810699 52 + 198332218 --TAGCCCAGTGGTGTGCCCTGTGT---TTACTGCTGAAAATTCAGGAGAGAAACAA
i ponAbe2.chr4             I 2 C 0
s nomLeu3.chr7b            113582216 52 + 115148730 --TAGCCCAGTGGTGAGGCCCGTGT---TTACTGCTGAAAATTCAGGAGAGAAACAA
i nomLeu3.chr7b            I 2 C 0
s rheMac3.chr5             183409633 52 + 184069350 --TAGCCCTGTGCTGTGCCTTGTGT---TTACTGCTGAAAATTCAGGAGAGAAACAA
i rheMac3.chr5             I 12 C 0
s macFas5.chr5             188789813 52 + 189454096 --TAGCCCTGTGCTGTGCCTTGTGT---TTACTGCTGAAAATTCAGGAGAGAAACAA
i macFas5.chr5             I 2 C 0
s papAnu2.chr5             178216972 52 + 178775436 --TAGCCCTGTGCTGTGCCCTGTGT---TTACTGCTGAAAATTCAAGAGAGAAACAA
i papAnu2.chr5             I 2 C 0
s chlSab2.chr7             135158018 52 + 135778131 --TAGCCCTGCAGTGTGCCCTGTGT---TTACTGCTGAAAATTCAGGAGAGAAACAA
i chlSab2.chr7             I 2 C 0
s canFam3.chr16             17735805 57 -  59632846 TAAAACTCAAAGGCATTCTATGCATTAATTGTTGCTGAAAATTCAAGAAAGAAACAA
i canFam3.chr16            C 0 I 103
e mm10.chr8                 87402709 323 - 129401213 I
e calJac3.chr3             190323318  0 - 190850796 C

a score=700371.000000
s hg38.chr4_KI270925v1_alt      2871 310 +    555799 ACCAGCCAAC-AATCAGAGTGAGCAAATCACTTCTATCCTACCTCTCATGAAATAATAGAA-TTTTTTAAAAAAGGAAAAAAAAATTC----AAGAAAGAGTATAAGAAGGTCtctaaatcagtttgggatgctataacgaaaaataccacagactgggtggcttaaacaacacacatttatttctcaaagttctgtaggctgagaggaccaaatcgctggcagatgcagtgcctggtgaaggctgcatccgcg-tgagacgtgctgtctcctcattgtgtcccacgtggcagggggagcagagaggaagcctgctc
s panTro4.chr4             192700525 310 + 193495092 ACCAGCCAAC-AATCAGAGTGAGCAAATCACTTCTATCCTACCTCTCATGAAATAATAGAA-TTTTTTAAAAAAGGAAAAAAAA-TTC----AAGAAAGAGTATAAGAAGGTCtctaaatcagtttgggttgctataacgaaaaataccatagactgggtggcttaaacaacacacatttatttctcagagttctgtaggctgagaggaccaaatcgctggcagatgcagtgcctggtgaaggctgcatccggggtgagacgtgctgtctcctcattgtgtcccatgtggcagggggagcagagaggaagcctgctc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197810751 310 + 198332218 ACCAGTCAAC-AATCAGAGTGAGCAAATCACTTCTATCTTACCTCTCATGAAATAATAGAA-TTTTTAAAAAAAGGAAAAAAAA-TTC----AAGAAAGAGTATAAGAAGGTCtctaaatcagtttgggatgctataacgaaaaataccatagactgggtagcttaaacaacacacatttatttctcaatgttctgtaggctgagaggaccaaatcgctggcagatgcggttcctggtgaaggctgcatccagggtgagacgtgctgtctcctcattgtgtcccacgtggcagggggagcagagagaaagcctgctc
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113582268 308 + 115148730 ACCAGCCAAC-AATcagagtgagcaaagcacttctatcctacctctcatgaaataatagaa-tttttttaaaaaggaaaaaaaa-ttc----aagaa--agtataagaaggtctctaaatcagtttgggctgctataacgaaaaataccatagactgggtggcttaaacaacacacatttatttctcaaagttctgtaggctgagaggaccaaatcactggcagatgcggtgcctggtgaaggctgcatccggggtgagacctgctgtctcctcattgtgtcccacgtggcagggggagcagagaggaagcctgctc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183409685 310 + 184069350 ACCAGCCAACAAATCAGAGTGAGCAACTCACTTCTATCCTACCTCTCATGAAATAATAGAATTTTTTTTAAAAAAGggaaaaaa--cc----aagaaagaatgtaagaaggtctttaaatcagttcgggctgctataacaaaaaataccatagactgggtggcttaaacaacacgcatttatttctcaaagctctgtaggctgagaggaccaaattgctggcagatgcggtgcctggtgaaggctgcatcctgggtgagacgtgctgtctcctcattgtgtgccacgtggc-ggggcagcggagaggaagccagctc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188789865 309 + 189454096 ACCAGCCAACAAATCAGAGTGAGCAACTCACTTCTATCCTACCTCTCATGAAATAATAGAA-TTTTTTTAAAAAAGGGAAAAAA--CC----AAGAAAGAATGTAAGAAGgtctttaaatcagttcgggctgctataacaaaaaataccatagactgggtggcttaaacaacacgcatttatttctcaaagctctgtaggctgagaggaccaaattgctggcagatgcggtgcctggtgaaggctgcatcctgggtgagacgtgctgtctcctcattgtgtgccacgtggc-agggcagcggagaggaagccagctc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178217024 313 + 178775436 ACCAGCCAACAAATCAGAGTGAGCAACTCACTTCTATCCTACCTCTCAtgaaataatagaa-tttttttttaaaagggaaaaaa--ccaagaaagaaagaatgtaagAAGGTCTTTAaatcagtttgggctgctataacaaaaaataccatagactgggtggcttaaacaacacgcATCTATTTCTCAAAGCTCTGTAGGCTGAGAGGACCAAATTGCTGGCAGATGCGGTGCCTGGTGAAGGCTGCATCCTGGGTGAGACGTGCTGTCTCCTCATTGTGTGCCACGTGGC-GGGGCAGCGGAGAGGAAGCCAGCTC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135158070 308 + 135778131 ACCAGCCAACAAATCAGAGTGAGCAACTCACTTCTATCCTACCTCTCACGAAATAATAGAA-TTTTTTTAT-AAAGGGAAAAAA--CC----AAGAAAGAGTGTAAGAAGgtctttaaatcagttcaggctgctataacaaaaaataccatagactgggtggcttaaacaacacgcatctaattctcaaagctctgtaggctgagaggaccaaattgctggcagatgcggtgcctggtgaaggctgcatcctgggtgaggcctgctgtctcctcgttgtgtgccacgtggc-ggggcagcagagaggaagccagctc
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17735862 103 -  59632846 I
e calJac3.chr3             190323318   0 - 190850796 C

a score=1424514.000000
s hg38.chr4_KI270925v1_alt      3181 593 +    555799  
s panTro4.chr4             192700835 593 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197811061 591 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113582576 593 + 115148730  
i nomLeu3.chr7b            C 0 I 7
s rheMac3.chr5             183409995 578 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188790174 578 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178217337 580 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135158378 580 + 135778131  
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17735965 509 -  59632846  
i canFam3.chr16            I 103 C 0
e mm10.chr8                 87402709 323 - 129401213 I
e calJac3.chr3             190323318   0 - 190850796 C

a score=2886.000000
s hg38.chr4_KI270925v1_alt      3774 7 +    555799 CCCAACA
s panTro4.chr4             192701428 7 + 193495092 CCCAACA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197811652 7 + 198332218 CCCAACA
i ponAbe2.chr4             C 0 C 0
s canFam3.chr16             17736474 7 -  59632846 CCTAATG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87402709 323 - 129401213 I
e calJac3.chr3             190323318 0 - 190850796 C
e chlSab2.chr7             135158958 0 + 135778131 C
e papAnu2.chr5             178217917 0 + 178775436 C
e macFas5.chr5             188790752 0 + 189454096 C
e rheMac3.chr5             183410573 0 + 184069350 C
e nomLeu3.chr7b            113583169 7 + 115148730 I

a score=14044.000000
s hg38.chr4_KI270925v1_alt      3781 30 +    555799 GACCATGACTGACTCCTAGAAACACAAGAG
s panTro4.chr4             192701435 30 + 193495092 GACCATGACTGACTCCTAGAAACACAAGAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197811659 30 + 198332218 GACCATGACTGACTCCTAGAAACACAAGAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113583176 30 + 115148730 GACCATGACTGACTCCTAGAAACACAAGAG
i nomLeu3.chr7b            I 7 T 37
s canFam3.chr16             17736481  7 -  59632846 --------------GCTAGGA---------
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87402709 323 - 129401213 I
e calJac3.chr3             190323318  0 - 190850796 C
e chlSab2.chr7             135158958  0 + 135778131 C
e papAnu2.chr5             178217917  0 + 178775436 C
e macFas5.chr5             188790752  0 + 189454096 C
e rheMac3.chr5             183410573  0 + 184069350 C

a score=712034.000000
s hg38.chr4_KI270925v1_alt      3811 311 +    555799 CC-------------------------------------CAATGGACCATGACTGACTCCTAGAAACACAAGAGCCCAGTGGACAAGGATTTCAAAGGAAAAGACAAATCCACAAGCATTTGGGCAAACCCTGTGCCAGGAGTCAAATACACCAAACTCGATGGAAAGAAGCACTAA---CAGCAACCTA----------ATTAATAAATATAACAAGTGTAACTAATTATGACAAGGATATTAGAGAAGATTATTTATACCTTACAAAGAAATACCTGGTGATCTCAGAATCTTTTAAATATAA----TTGTCAAAAAATTCATGGGTGATCTAAAAGGTAAAATGCACTCAATTGAAAAGCAA--
s panTro4.chr4             192701465 311 + 193495092 CC-------------------------------------CAATGGACCATGACTGACTCCTAGAAACACAAGAGCCCAATGGACAAGGATTTCAAAGGAAAAGACAAATCCACAAGCATTTGGGCAAACCCTGTGCCAGGAGTCAAATACACCAAACTCGATGGAAAGAAGCACTAA---CAGCAACCTA----------ATTAATGAATATAACAAGTGTAACTAATTATGACAAGGATATTAGAGAAGATTATGTATACCTTACAAAGAAATACCTGGTGATCTCAGAATCTTTTAAATATAA----TTGTCAAAAAATTCATGGGTGATCTAAAAAGTAAAATGCACTCAATTGAAAAGCAA--
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197811689 348 + 198332218 CCCAATGGACCATGACTGACTCCTAGAAACAGAAGACCCCAATGGACCATGACTGACTCCTAGAAACACAAGAGCCCAATGGACAAGGATTTCAAAGGAAAAGACAAATCCACAAGCGTTTGGGCAAACCCTGTGCCAGGAGTCAAATACACCAAACTCGACGGAAAGAAGCACTAA---CGGCAACCTA----------ATTAATAAATATAAAAAGTGTAACTAATTATGACAAGGATATTAGAGAAGATTATGTATACCTTACAAAGAAATACCTGGTGATCTCAGAATCTTTTAAATATAA----TTGTCAAAAAATTCATGGGTGATCTAAAAAGTAAAATGCACTCAAGTGAAAAGCAA--
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113583169 311 + 115148730 CC-------------------------------------CGAAGGACCATGACTGACTCCTAGAAACACAAGAGCCCAATGGACAAGGATTTCAAAGGAAAAGACAAATCCAAAAGCGTTTGGGCAAACCCTGTGCCAGGAGTCAAATACACCAAACTCGACAGAAAGAAGCACTAA---CAGCAACCTA----------ATTAATACATATAACAAGTGTAACTAATTATGACAAGGATATTAGAGAAGATTATGTATACCTTACAAAGAAATACCTGGTGATCTCAGAATCTTTTAAATATAA----TTGTCAAAAAATTCATGGGTGATCTAAAAAGTAAAATGCACTCAATTGAAAAGCAA--
i nomLeu3.chr7b            T 37 C 0
s rheMac3.chr5             183410573 283 + 184069350 ---------------------------------------------------------------AAACAGAAGGGCCAAATGGACAAGGATTTCAAAGGAAAAGACAAATCCACAAGCATTTTGGCAAACCC--TGCCAGGAATAAAATACATCAAACTCAATGGAAAGAAGCACTAA---CAGCAACCTA----------ATTAATAAATATAATGGGTATAACTAATTATGACAAGGATATTAGAGAAGATGATATATACCTTACAAAGAAATACCTGGTGATCTCAGAATTTTTAAAATATAA----TTGTCAAAAAATTCATGGGTGATCTAAAAAGTAAAATGCACTCAATTGAAAAACGA--
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188790752 283 + 189454096 ---------------------------------------------------------------AAACAGAAGGGCCAAATGGACAAGGATTTCAAAGGAAAAGACAAATCCACAAGCATTTTGGCAAACCC--TGCCAGGAATAAAATACACCAAACTCAACGGAAAGAAGCACTAA---CAGCAACCTA----------ATTAATAAATATAATGGGTATAACTAATTATGACAAGGATATTAGAGAAGATGATATATACCTTACAAAGAAATACCTGGTGATCTCAGAATTTTTAAAATATAA----TTGTCAAAAAATTCATGGGTGATCTAAAAAGTAAAATGCACTCAATTGAAAAACGA--
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178217917 283 + 178775436 ---------------------------------------------------------------AAACAGAAGGGCCAAATGGACAAGGATTTCAAAGGAAAAGACAAATCCACAAGCATTTTGGCAAACCC--TGCCAGGAATAAAATACACCAAACTCAACGGAAAGAAGCACTAA---CAGCAAccta----------attaataaatataatgagTATAACTAATTATGACAAGGATATTAGAGAAGATGATATATACCTTACAAAGAAATACCTGGTGatctcagaatttttaaaatataa----ttgtcaaAAAATTCATGGGTGatctaaaaagtaaaatgcacTCAATTGAAAAACGA--
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135158958 285 + 135778131 ---------------------------------------------------------------AAACAGAAGGGCCAAATGGACAAGGATTTCAAAGGAGAAGACAAATCCACAAACATTTTGGCAAACCCTGTGCCAGGAATAAAATACACCAAACTCAACGGAAAGAAGCACTAA---CAGCAACCTA----------ATTAATAAATATAACAAGTATAACTAATTATGACAAGGATATTAGAGAAGATGATACACACCTTACAAAGAGATACCTGGTGATCTCAGAATTTTAAAAATATAA----TTGTCAAAAACTTCATGGGTGATCTAAAAAGTAAAATGCACTCAATTGAAAAGCAA--
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17736488 294 -  59632846 -----------------------------------------------------------TTAAAAAGATAA-----TAATAAAAAAAGATGGCTAATGATCAA--AATTCCATAAGCATTTGACCAAAAACTGTGCCAGAAACAAGACTCACTGAATTCA----AAAAACATATCAAACTCAATGATCCATATGACCCATCTCAATAAAATTAGTCAGCATAACTAATAATGATAAGGATATTAGAGGATATTGCATATACATGGAAAGGAAGAATCTGAGGATACCAGAAATTTAAAAAAAAAAATGTTTGTCAAAACA---ATAGGTGGCCTAAAAAGTAAAATGTACTCAATTGAAATGATTAT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87402709 323 - 129401213 I
e calJac3.chr3             190323318   0 - 190850796 C

a score=694244.000000
s hg38.chr4_KI270925v1_alt      4122 226 +    555799 ATTAGTTGAAATA--TTTTT-AAAAAGATTCTCCCAGGAAACTAGCCAAAAGATCCAAATGTGGAAAGTGTTTGAGAGTTAGAAGCACAAAGAATATTCC-AAAATCTTAGAAATGCCCATGGGAGAAGTGCcaatggaaagtggaaataattacagaaatgatagaaatcgatttctaaaagctgaaaaacaactcaagtctccaaatttataaggg-ccactgagtgtc
s panTro4.chr4             192701776 226 + 193495092 ATTAGTTGAAATA--TTTTT-AAAAAGATtctcccaggaaactagccaaaagatccaaatgtggaaagtatttgagagttagaagcacaaagaatattcc-aaaatcttagaaatgcccatgggagaagtgccaatggaaagtggaaataattacagaaaagatagaaatcgatttctaaaagctgaaaaacaactcaagtctccatatttataaggg-ccactgagtgtc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197812037 226 + 198332218 ATTAGTTGAAATA--TTTTT-AAAAAGGTTCTCCCAGGAAACTAGCCAAAAGATCCAAATGTGGAAAGTGTTTGAGAGTTAGAAGCACAAAGAATATTCC-AAAATCTTAGAAATGCCCATGGGAGAAGTGCCAATGGAAAGTGGAAATAATTACAGAAATGATAGAAATTGATTTCTAAAAGCTGAAAAACAACTCAGGTCTCCATATTTATAAGGG-CCACTGAGTGTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113583480 227 + 115148730 ATTAGTTGAAATA--TTTTT-TAAAAGATTCTCCCAGTAAACTAGCCAAAAGATCCAAATATGGAAAGCGTTTGAAAGTTAGAAGCACAAAGAATATTCC-AAACTCTTAGAAATGCCCATGGGAGAAGTGCcaatggaaagtggaaatcattacagaaatgatagaaatcgatttctaaaagctgaaaaacagctcaagtttccatatttataagggcccactgagtgtc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183410856 227 + 184069350 ATTA-TTGAAATATGTTTTT-AAAAAGATTCTCCCAGTAAACTGGCCAAAAGATTCAAATATGGAAAGAGTTTGCGAGTTAGAAGCACAAAGAACATTCC-AAAATCTTAGAAATGCCCATGGGAGAAGTGCcaatggaaagtggaaataattacagtaatgatagaaatcgatttctaaaatctgaaaaacaactcaagtctccatatttataaggg-tcactaagtgtc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188791035 227 + 189454096 ATTA-TTGAAATGTGTTTTT-TAAAAGATTCCCCCAGTAAACTGGCCAAAAGATTCAAATATGGAAAGTGTTTGCGAGTTAGAAGCACAAAGAACATTCC-AAAATCTTAGAAATGCCCATgggagaagtgccaatggaaagtggaaataattacagtaatgatagaaatcgatttctaaaagctgaaaaacaactcaagtctccatatttataaggg-tcactaagtgtc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178218200 228 + 178775436 ATTAgttgaaatatgttttt-taaaagattctccCAGTAAACTGGCCAAAAGATTCAAATATGGAAAGTGTTTGCGAGTtagaagcacaaagaacattCC-AAAATCTTAGAAATGCCCATGGGAGAAGTGCCAATGGAAAGTGGAAATAATTACAGTAATGATAGAAATCAATTTCTAAAAGCTGAAAAACAACTCAAGTCTCCATATTTATAAGGG-TCACTAAGTgtc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135159243 229 + 135778131 ATTAGTTAAAATATGTTTTTGTAAAAGATTCTCCCAGTAAACTGGCCAAAAGATTCAAATATGGAAAGGGTTTGCGAGTTAGAAGCACAAAGAACATTCC-AAAACCTTAGAAATGCCCATgggagaagtgccaatggaaagtggaaataattacagtaatgatagaaatcgatttctaaaagctgaaaaacaactcaagtctccatatttataaggg-tcactaaatgtc
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190323318 212 - 190850796 attaattaataa---ttttt-taaaaGATTCTCCCAGTAAACTAGTCAAAATATCCAAATATGGAAAGGGTTTGAGAGTTAGAGGCACAAAGGATACTCC-AAAATCTTAGAAATGGCCATG---GAAGTGCCAATGAAAAGTCAAAATAATT---------ATAGAAATCGATTTTTAAAACCTG-AGAACAACTCAAGTCTCCGTATTTATAAGGG-CTACTAGGTGCA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17736782 224 -  59632846 GTTAGTTGA-ATA--TTAAC-AAAAACATTCTTCTATTAAACTATTTAAAAGACCTGAGTATAGAATGTGTCAGAGTATTAGAGACATGAAGTAAATTCCGAAAAAATTAGAAATTGTCAAGGG-GTAGTGTGAGTAGAAAGTATAAATAATTGGAGAAATGATAGAAGACAGTTTTTAAGAAAT-ACAGGCAATTTGAGTTTCCAGGTTAATAGGTA-CAAATAAATACC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87402709 323 - 129401213 I

a score=105094.000000
s hg38.chr4_KI270925v1_alt      4348 42 +    555799 aagaaggataaataaaaaaTAATGAGAGAggccaggtgcagt
s panTro4.chr4             192702002 42 + 193495092 aagaaggataaataaaaaaTAATGAGAGAggccaggtgcagt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197812263 42 + 198332218 AAGAAGGATAAATAAAAAATAATGAGAGAggccaggtgcagt
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113583707 41 + 115148730 aagaaggataaat-aaaaaTAATGAGAGAggccaggtgcagt
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183411083 42 + 184069350 aagaaagataaataaaaaGTAGTGAGAGAggccaggtgcagt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188791262 42 + 189454096 aagaaagataaataaaaaGTAGTGAGAGAggccaggtgcagt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178218428 42 + 178775436 aagaaagataaataaaaaatagtgagagaggccaggtgcagt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135159472 38 + 135778131 aagaaag----ataaaAAATAGTGAGAGAggccaggtgcagt
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190323530 37 - 190850796 AAGAATGAT-----AAAAATAGCCAGAGAATCCTGAGGTAGT
i calJac3.chr3             C 0 I 488
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17737006  0 -  59632846 C

a score=718670.000000
s hg38.chr4_KI270925v1_alt      4390 302 +    555799 ggctcacgcctgtaatcccagcactttgggaggctgaggcaggcagatcacgaggtcaagagatcaagaccatcctggccaacatgctgaaaccctgtctctactaaaaataaaaaaaaattaggtgggtgtggtggcacgtgtctgtagtcccagctactggggaggctgaggcaggagcatcacttgaacccaggaggcagaggttgcagtgagccaagatggcgccactgcactccagcctggtgacagagtgagattccatctcaa--------------aaaacaaaac-aaaaaaT----AGACAATCCTAATTT
s panTro4.chr4             192702044 308 + 193495092 ggctaacgcctgtaatcccagcactttgggaggctgaggcaggcagatcatgaggtcaagagatcaagaccatcctggccaacatgctgaaaccctgtctctactaaaaat---aaaaaattaggtgggtgtggtggcacgtgtctgtagtcccagctactggggaggctgaggcaggaggatcccttgaacccaggaggcagaggttgcagtgagccaagaaggcgccactgcactccagcctggtgacagagtgagactccatctcaaaaaac-----aaacaaaacaaaac-aaaaaaT----AGAGAATCCTAATTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197812305 315 + 198332218 ggttcacgcctgtaattccagcactttgggaggctgaggcaggcagatcatgaggtcaagagatcgagaccatcctggccaacatgctgaaaccctgtctctactaaaaataaaaaaaaattagctgggtgtggtggcacgtgcctgtagtcccagctactggggaggctgaggcaggaggatcgcttgaacccaggaggcggaggttgcagtgagccaagatggcgccactgcactccagcccagcgacagagcgagactccgtctcaaaaaac-----aaacaaaacaaaac-aaaaaaTAGTCAGAGAATCCTAATTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113583748 319 + 115148730 ggctcatgcctgtaatcccagcactttgggaggctgaggcaggcagatcacgaggtcaagagatcgagaccatcctggccaacatgctgaaaccctgtctctactaaaaat-acaaaaaattagctgggtgtggtggcacgtgcctgtagtcccagctactggggaggctgaggcaggaggatcacttgaacccaggaggcggaggttgcagtgagccaagatggcaccactgcactccagcccagcgacagagtgagactccatctcgaaaaacaaacaaaacaaaacaaaat-aaaaAATAGTCAGAGAATCCTAATTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183411125 315 + 184069350 ggctcacgcctgtaatcccagcactttgggagactgaggcaggtggatcacgaggtcaagagatcgagaccatcctggccaacatgctgaaaccctgtctctactaaaaat-agaaaaaattagctgggcatggtggtgggtgcctgtagtcccagctactggggaggctgaggcagaaggattgcttgaacccgggaggcggaggttgcagtgagccaagattgctccactgcactccagcctggtgacagagcgagactccatctcaaaaaac-----aaacaaaacaaaacaaaaaaaTAGCAAGAGAATCCTGATTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188791304 315 + 189454096 ggctcacgcctgtaatcccagcactttgggagactgaggcaggtggatcacgaggtcaagagatcgagaccatcctggccaacatgctgaaaccctgtctctactaaaaat-agaaaaaattagctgggcatggtggtgggtgcctgtagtcccagctactggggaggctgaggcagaaggattgcttgaacctgggaggcggaggttgcagtgagccaagattgcgccactgcactccagcctggtgacagagcgagactccatctcaaaaaac-----aaacaaaacaaaacaaaaaaaTAGCAAGAGAATCCTGATTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178218470 315 + 178775436 ggctcacgcctgtaatcccagcactttgggagactgaggcaggtggatcacgaggtcaagagatcgagaccatcctggccaacatgctgaaaccctgtctctactaaaaat-agaaaaaattagctgggcatggtggtgggtgcctgtagtcccagctactggggaggctgaggcagaaggattgcttgaacccttgaggcggaggttgcagtgagccaagattgcaccactgcactccagcctggtgacagagcgagactccatctcaaaaaac-----aaacaaaacaaaacaaaaaaatagcgaGAGAATCCTGATTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135159510 315 + 135778131 ggctcacgcctgtaatcccagcactttgggagactgaggcgggcggatcacgaggtcaagagattgagaccatcctggccaacatgctgaaaccctgtctctactaaaaat-tgaaaaaattagctgggcatggtggtgggtgcctgtaatcccagctactggggaggctgaggcaggagaatcacttgaacccaggaggcggaggttgcagtgagccaagatcacgccactacactccagcctggtgacagagcgagactccgtctcaaaaaac-----aaacaaaacaaaacaaaaaaaTAGTGAGAGAATCCTGATTT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17737006   0 -  59632846 C
e calJac3.chr3             190323567 488 - 190850796 I

a score=133225.000000
s hg38.chr4_KI270925v1_alt      4692 54 +    555799 AGTCCATGTTTTACACC-AAAAGTACAAGT----------------------------TGAGGGGTACTTAAAAATTGGTGTA
s panTro4.chr4             192702352 54 + 193495092 AGTCCATGTTTTACACC-AAAACTACAAGT----------------------------TGAGGGGTCCTTAAAAATTGGTGTA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197812620 82 + 198332218 AGTCCATGTTTTACACC-AAAAGTACAAGTTTTGGTGTCCTTGTACTTTAAGGACAAGTGAGGTGTCCTTAAAAATTGGTGTA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113584067 55 + 115148730 AGTCCATGTTTTACACCAAAAAATACAAGT----------------------------TGAGGGGTCCTTAAAAGTTGGTGTA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183411440 54 + 184069350 AGTCCATATTTTACACC-AAAAAGATAAGT----------------------------TGAGGGGTCCTTAGAAATTGGCGTG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188791619 54 + 189454096 AGTCCATATTTTACACC-AAAAAGATAAGT----------------------------TGAGGGGTCCTTAGAAATTGGCGTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178218785 54 + 178775436 AGTCCATATTTTACACC-AAAAAGATAAGT----------------------------TGAGGGGTCCTTAGAAATTGGCGTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135159825 54 + 135778131 AGTCCATGTTTTACACC-AAAAAGATAAGT----------------------------TGAGGAGTCCTTAGAAATTGGCGTG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190324055 53 - 190850796 AGTCCATGTTTTACACT-AAAAATAAAAGG----------------------------TGAGG-GTTCTTAGAAATCAGTATA
i calJac3.chr3             I 488 C 0
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17737006  0 -  59632846 C

a score=1721439.000000
s hg38.chr4_KI270925v1_alt      4746 574 +    555799  
s panTro4.chr4             192702406 577 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197812702 573 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113584122 574 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183411494 576 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188791673 573 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178218839 565 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135159879 568 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190324108 550 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17737006 588 -  59632846  
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87402709 323 - 129401213 I

a score=1241895.000000
s hg38.chr4_KI270925v1_alt      5320 470 +    555799 GACATGGTGCCTGCACATATTAAAGGAAATGGCATAAATTAAAGGGCCCCACAAGTTAAAAATAAATAAAAAGACTTGTATCAATTTCTCCAACAAAAATAGCCTTATAACAAGTAGATCTGGTTTGCTTAGGAAGAAGTA--ACAGAGAATTTAAATATCTTTCAGAAAGAGAGACATGAAAGATCATCCAGGCTTTTCTTTGAAATGAAAGTATTTATTAGCTAGCACTAGATTAACTTTCAATAAAATACAGGAGCCCAACCTCGCTTCTTAAAATTAAGTTAATTTTAAAAAGGACCCTTggctgggtgtagtggctcactcctgtaatcccagcactttggtaagccaaggtgggagtatcgcttgagcccaggagttagagaccatcctgggcaacatggtgagatcccatcgttac---------aaaaaaaatacagaaattagccaggcatggtggtg--catgactgtggtcc
s panTro4.chr4             192702983 470 + 193495092 GACATGGTGCCTGCATATATTAAAGGAAATGACATAAATTAAAGGGCCCCACAAGTTAAAAATAAATAAAAAGACTTGTATCAATTTCTCCAACAAAAATAGCCTTATAACAAGTAGATCTGGTTTGCTTAGGAAGAAGTA--ACAGAGAATTTAAATATCTTTCAGAAAGACAGACATGAAAGATCATCCAGGCTTTTCTTTGAAATGAAAGTATTTATTAGCTAGCACTAGATTAACTTTCAATAAAATACAGGAGCCCAACCTCGCTTCTTAAAATTAAGTTAATTTTAAAAAGGACCCTTggctgggcatagtggctcactcctgtaatcccagcactttggtaagccaaggtgggagtatcgcttgagcccaggagttagagaccatcctgggcaacatggtgagatcccatcgttac---------aaaaaaaatacagaaattagccaggcatggtggtg--catgactgtggtcc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197813275 470 + 198332218 GACATGGTGCCTGCACATATTAAAGGAAATGACATAAATTAAAGGGCCCCACAAGTTAAAAATAAATAAAAAGACTTGTATCAATTTCTCCAACAAAAATAGCCTTATAACAAGTAGATCTGGTTTGCTTAGGAAGAAGTA--ACAGAGAATTTAAATATCTTTCAGAAAGAGAGACATGAAAGATCATCCAGGCTTTTCTTTGAAATGAAAGTATTTATTAGCTAGCACTGGATTAACTTTCAGTGAAAGACAGGAGCCCAACCTGGCTTCTTCTAATTAAGTTAATTTTATAAAGGACCCTTggctgggcgtggtggctcactcctgtaatcccagcactttggtaagccaaggtgggaggatcgcttgagcccaggagtgagagaccatcctgggcaacatggtgagatcccatcgttac---------caaaaaaatgcagaaattagccaggcatggtggtg--cacgactgtggtcc
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113584696 463 + 115148730 GACATGGTGCCTGCACATATTAAAGGAAATGACATAAATTAAAGGGCCCCACAAGTTAAAAAT------AAAGACTTGTATCAATTTCTCCAACAAAAATAGCTTTATAACAAGTAGATCTGGTTTGCTTAGGAAGAAGTA--ACAGAGAATTTAAATATCTTTCGGAAAGAAAGACATAAAAGATCATCCAGGCTTTTCTTTGAAATGAAAGTATTTATTAGCTATCACTAGATTAACTTTCAATAAAATACAGGAG-CCAACCTCGTTTCTTAAAATTAAGTTAATTTTAAAAAGGACCCTTggctgggcgtggtggctcactcctgtaatcccagtactttggtaagccaaggtgggagtatcgcttgagcccaggagttagagaccaccctgggcaacacggcgagatcccatcgttac---------aaaaaaaatacagaaattagccaggcatggtggtg--catgactgtggtcc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183412070 453 + 184069350 GACATGGTACCTGCACATATTAAAGGAAATGACATAAATTAAAGGGCCTCACACATTAAAAAGAAGTAAAAAGACTTGTATCAATTTATCCAACAAAAATAGCCTTGTAACAAGTAGATCTGGTTTGCTTAGGAAGAAGTA--ACGGAGAATTTAAATATCTTTCAGAAGGAAAGACATAAAGGATCATCCCGGCTTTGCTTCGAAATGGAAGTATTTATTAGCTGGCACTAGAATAACTTTCGGTAAAACTCCAGAGCCTAACCTCGCTTCTTAAAATTAAGTTGATTTTA---------------------Tggtggctaactcctgtaatcccagctcttggtgaggccaaggtggaaggatagcctgagcccaggagttagagaccatcctgggcaacatggcgagatcccacctttac-----aaaaaaaaaaaatgcagaaattagccaggcatggtgatg--cgtgcctgtggtcc
i rheMac3.chr5             C 0 I 31
s macFas5.chr5             188792246 455 + 189454096 GACATGGTACCTGCACATATTAAAGGAAATGACATAAATTAAAGGGCCTCACACATTAAAAAGAAGTAAAAAGACTTGTATCAATTTATCCAACAAAAATAGCCTTGTAACAAGTAGATCTGGTTTGCTTAGGAAGAAGTA--ACGGAGAATTTAAATATCTTTCAGAAGGAAAGACATAAAGGATCATCCCGGCTTTGCTTCGAAATGGAAGTATTTATTAGCTGGCACTAGAATAACTTTCGGTAAAACTCCGGAGCCTAACCTCGCTTCTTAAAATTAAGTTGATTTTA---------------------Tggtggctcactcctgtaatcccagctcttggtgaggccaaggtggaaggatagcctgagcccaggagttagagaccatcctgggcaacatggcgagatcccacctttac---aaaaaaaaaaaaaatgcagaaattagccaggcatggtgatg--cgtgcctgtggtcc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178219404 456 + 178775436 GACATGGTGCCTGCACATATTAAAGGAAATGACATAAATTAAAGGGCCTCACAcgttaaaaagaagtaaaatgactTGTATCAATTTATCCAACAGAAATAGCCTTATAACAAGTAGATCTGGTTTGCTTAGGAAGAAGTA--ACGGAGAATTTAAATACCTTTCAGAAGGAAAGACATAAAGGATCATCCCGGCTTTGCTtcgaaatgaaattatttattagcTGGCACTAGAATAACTTTCGGTAAAACTCCGGAGCCTAACCTTGCTTCTTAAAATTAAGTTGATTtta---------------------tggtggctcactcctgtaatcccagcacttggtgaggccaaggtggaaggattgcctgagcccaggagttagagaccatcctgggcaacatggcgagatcccatctttac--aaaaaaaaaaaaaaatacagaaattagccaggcatggtgatg--cgtgcctgtggtcc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135160447 458 + 135778131 GACATGGTGCCTGCACATATTAAAGGAAATGACATAAATTAAAGGGCCTCACACATTAAAAAGAAGTAGAAAGACTTGTATCAATTTATCCAACAAAAATAGCTTTATAACAAGTAGATCTGGTTTGCTTAGGAAGAAGTA--ACGGAGAATTTAAATGTCTTTCAGAAAGAAAGACATAAAGGATCATCCCGGCTTTTCTTTGAAATGGAAGTATTTATTAGCTGGCACTAGAATAACTTTCGGTAAAACTCAGGAGCCTAACCTCACTTCTTAAAATTAAGTTGATTTTA---------------------Tggtggctcaatcctgtaatcctagcacttggtgaggccaaggcggaaggattgcctgagcccaggagttagagaccatcctgggcaatatggcgagatcccatctttaccaaaaaaaaaaaaaaaatgcagaaatcagccaggcatggtggtg--cgtgcctgtggtcc
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190324658 467 - 190850796 GACATGGAACCTGCACGTATTAAAGAAGATGACATGAATTAAAGGTCTCCACAAGTTAAAAATAAATAAAAAGACTGGAATTAATTTCTCCAACAAAAATAGCCTCATAACAAGTAGATCTGGTTCACTTAGGAAGAAGTAGTGCAGAGGGTTTAAATATCGTTCGGA--GAAAGACATAAA-GACCATCCAGGCTTTGCTTAGAAATGAAAGTATTTATTAGCTAGCACCAGATTAACTTTCAATAAAATACAGGAGCACAACATAGCTTCTTAAAGTTAATT---TTTGAAAAAGGACCCTTggctgggcagtgtggctcattactgtaatcccaacactttggaaaaccaagatggaaggatcccttgagcccagaagctacagacaatcctgggcaacatggcaagatccgctctttac----------acaaaaatacagaaactagacaagcatggtggagcacgcgcctgtggtcg
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17737594   0 -  59632846 C

a score=56208.000000
s hg38.chr4_KI270925v1_alt      5790 31 +    555799 cagctatttgagaggGAAAAATTGGAGGATT
s panTro4.chr4             192703453 31 + 193495092 cagctatttgagagggaaaaatgggaggatT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197813745 31 + 198332218 cagctgtttgagagggaaaaatgggaggatT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113585159 28 + 115148730 cagctatttgagagggtaaagtgggagg---
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188792701 31 + 189454096 cagctatttgagagggtaaagtggaaggatT
i macFas5.chr5             C 0 I 4
s papAnu2.chr5             178219860 31 + 178775436 cagctctttgagagggtAAAGtggaaggatt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135160905 31 + 135778131 cagctatttgagagggtaaagtgggaggatt
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190325125 30 - 190850796 cagctctttaggagcctgaagtgggaggGT-
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17737594  0 -  59632846 C
e rheMac3.chr5             183412523 31 + 184069350 I

a score=459414.000000
s hg38.chr4_KI270925v1_alt      5821 187 +    555799 TaaaaaaaaaaaaaaaaaGCACCCAGACCATCAGCATGTGTTAGTTATAGCACCTGGACATGGATACTCAGCAACACTTTCTGAGTGAACGAGGAACGGGCTCTGATAATCCCCTGGCGTGCCCACATTGGATTGGTGATGCTGATGGACACTGCATGAGCAAAATG---CCCTCTAAATTGAGCAGTAC
s panTro4.chr4             192703484 187 + 193495092 TAAAAAAAAAAAAAAAAAGCACCCAGACCATCAGCATGTGTTAGTTATAGCACCTGGACACGGATACTCAGCAACACTTTCTGAGTGAACGAGGAACGGGCTCTGATAATCCCCTCACGTGCCCACATTGGATTGGTGATGCTGATGGACACTACATGAGCAAAATG---CCCTCTAAATTGAGCAGTAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197813776 181 + 198332218 T------AAAAAAAAAAAGCATCCAGACCATCAGCATGTGTTAGTTATAGCACCTGGACACGGGTACTCAGCAACACTTGCTGAGTGAACGAGGAACGGGCTCTAATAATCCCCTCGCATGCCCACATTGGATTGGTGATGCTGATGGACACTGCATGAGCAAAATG---CCCTCTAAATTGATCAGTAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113585187 178 + 115148730 ---------aAAAAAAAAGCACCCAGACAGTCAGCATGTGTTAGTTATAGCACCTGGACAGGGGTACTCAGCAACACTTTCTGAGTGAACGAGGAATGGGCTCTAATAATCCCCTAGCATGCCCACATTGGATTGGTGATGCTGATGGACACTGCATGAGCAAAATG---CCCTCTAAATTGAGCAGTAC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183412554 185 + 184069350 aaaaaaaaaaaaaaaaaaGCACCCAGACCGTCAGCATGTGTTAGCTATAGCACCTGGACACGGGT-CTCAGCAGCACTTTCTGAGTGAACGAGGAACGGGCTCTAACAAG-CCCTCGCACGCCCACGTTGGATTGGTGATGCTGATGGCCCCCGCATAAGTAGAATG---CCGTCTAAACTGAGGAGCAC
i rheMac3.chr5             I 31 C 0
s macFas5.chr5             188792736 185 + 189454096 aaaaaaaaaaaaaaaaaaGCACCCAGACCGTCAGCATGTGTTAGCTATAGCACCTGGACACGGGT-CTCAGCAGCACTTTCTGAGTGAACGAGGAACGGGCTCTAACAAG-CCCTCGCACGCCCACGTTGGATTGGTGATGCTGATGGCCCCCGCATAAGTAGAATG---CCGTCTAAACTGAGGAGCAC
i macFas5.chr5             I 4 C 0
s papAnu2.chr5             178219891 184 + 178775436 -aaaaaaaaaaaaaaaaagcacccagACCGTCAGCATGTGTTAGCTATAGCACCTGGCCACGGGT-CTCAGCAGCACTTTCTGAGTGAACGAGGAACGGGCTCTAACAAG-CCCTCGAACGCCAACGTTGGATTGGTGATGCTGATGGCCCCCGCATAAGTAGAATG---CCGTCTAAACTGAGGAGCAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135160936 188 + 135778131 gGAAAAAAAAAAAAAAAAGCACCCAGACCGTCAGCATGTGTTAGCTATAGCACCTGGACACGGGT-CTCAGCAGCACTTTCTGAGTGAACGAGGGACGGGCTCTAACAAG-CCCTCGCACGCCCACGTTGGATTGGTGATGCTGATGGTCCCCGCATGAGCAGAATGCCACCGTCTAAACTGAGGAGCAC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190325155 148 - 190850796 ----------AAAGAAAAGCACCCAGATCAT----------------TAGCACCTGGACACAGGCACTCAGCAACACGTCCTGAGTGAATGAGGAATGGGCTC-------------GCGTGCCCACATTAGATTGGTCATGCTGACAGGCACTGCATGGGCAAAATG---CCCTCTAAATTGAGTAGCAC
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87402709 323 - 129401213 I
e canFam3.chr16             17737594   0 -  59632846 C

a score=346651.000000
s hg38.chr4_KI270925v1_alt      6008 109 +    555799 TTTGCTTTCACGGCCATGTCCACCACAAACCAGCTGTAAAGATCCTAAGCAAATAAT---TTCCTGATTTTATAACATTAATATTTGTCTTGATTATCTTCCCACTTCAAAA
s panTro4.chr4             192703671 109 + 193495092 TTTGCTTTCAAGGCCATGTCCACCACAAACCAGCTGTAAAGATCCTAAGCAAATAAT---TTCCTGATTTTATAACATTAATATTTGTCTTGATTATCTTCCCAGTTCAAAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197813957 109 + 198332218 TTTGCTTTCAAGGCCATGTCCACCACAAACCAGCTGTAAAGATCCTAAGCAAATAAT---TTCCTGATTTTATAACATTAATATTTGTCTTGAATATCTTCCCAGTTCAAAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113585365 109 + 115148730 TTTGCTTTCAAGGCCATGTCCACCACAAACCAGCTATAAAGATCCTAAGCAAATAAT---TTCCTGATTTTATAACATTAATATTTGTCTTGCTTATCTTCCCAGTTCAAAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183412739 109 + 184069350 TTTGCTTTCAAGGCCGTGTCCACCACAAACCAGCTATAAAGATCCTAAGCAAATAAT---TTCCTGATTTTATAACATTAATATCTGTCTTGCTTCCCTTCCCAGTTCAAAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188792921 109 + 189454096 TTTGCTTTCAAGGCCGTGTCCACCACAAACCAGCTATAAAGATCCTAAGCAAATAAT---TTCCTGATTTTATAACATTAATATCTGTCTTGCTTCCCTTCACAGTTCAAAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178220075 109 + 178775436 TTTGCTTTCAAGGCCGTGTCCACCACAAACCAGCTACAAAGATCCCAAGCAAataat---ttcctgattttataACATTAATATCTGTCTTGCTTCCCTTCCCAGTTCAAAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135161124 109 + 135778131 TTTGCTTTCAAGGCCGTGTCCACCACAAACCAGCTATAAAGATCCTAAGCAAATAAT---TTCCTGATTTTACAACATTAATATCTGTCTTGCTTCCCTTCCCAGTTCAAAC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190325303 104 - 190850796 GTTGCTTTCAAGACCATGTCCACCACAGAACGGCTATGAAGATCCTAAGCAAATAAT---TTCCTGAT-----AACATTAATATTTGTCTTGCTTCCCTTTCTAGTTCAAAT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87403032 110 - 129401213 TTTGCTTTTAAAACCCCACCCACCGTTAATCAGGCATG-GGTTATTAAGCAAATAATAAATTTCTGACTTCACAACATTAATAATT-TCTTTTCTTCCATTTCATTTTGCAG
i mm10.chr8                I 323 C 0
e canFam3.chr16             17737594   0 -  59632846 C

a score=496905.000000
s hg38.chr4_KI270925v1_alt      6117 151 +    555799 GAGATGGTCATATGAAGTATATGCTAGTGTTCTAGGTAAAAGGAATATTACGTAATGATATAAATCATTCCAGTACAATGTCATAATTGCTACACAGTACTCTCCTTTTCAATATTTCAGCAACAAA-ACAGA--TTTTTACATGACTTTTGCT
s panTro4.chr4             192703780 151 + 193495092 GAGATGGTCATATGAAGTATATGCTAGTGTTCTAGGTAAAAGGAATATTACGTAATGATATAAATCATTCCAGTACAATGTCATAATTGCTACACAGTACTCTCCTTTTCAATATTTCAACAACAAA-ACAGA--TTTTTACATGACTTTTGCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197814066 151 + 198332218 GAGATGGTCATATGAAGTATATGCTAGTGTTCTAGGTAAAAAGAATATTGCATAATGATATAAATCATTCCAGTACAATGTCATAATTGCTACACAGTACTCTCATTTTCAATATTTCAACAACAAA-ACAGA--TTTTTACATGACTTTTGCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113585474 150 + 115148730 GAGATGGTCAAATGAAGTATATGCTAGTGTTCTAGGTAAAAGGAATATTGTGTAATGATATAAATCATTCCAGTACAATGACATCATTGCTACACAATACTCTCCTTTTCAATATTTCAACAACAAA-ACAGA--TTTTAATATGAC-TTTGCT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183412848 150 + 184069350 GAGATGGTCAAATGAAGCATATGCTAGTGTTCTAAGTAAAAGGAATATTGCATAGTAATAGAAATCATTCCAGTACAATGTCATCATTGCTACACACTACTCTCCTTTTCAATATTTCAACAACAAA-GCAGA--TTTTTACATGAC-TTTGCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188793030 150 + 189454096 GAGATGGTCAAATGAAGCATATGCTAGTGTTCTAAGTAAAAGGAATATTGCATAGTAATAGAAATCATTCCAGTACAATGTCATCATTGCTACACACTACTCTCCTTTTCAATATTTCAACAACAAA-GCAGA--TTTTTACATGAC-TTTGCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178220184 150 + 178775436 GAGATGGTCAAATGAAGCATATGCTAGTGTTCTAAGTAAAAGGAATATTGCATAGTAATAGAAATCATTCCAGTACAATGTCATCATTGCTACACACTACTCTCCTTTTCAATATTTcaacaacaaa-acaga--ttttTACATGAC-TTTGCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135161233 150 + 135778131 GAGATGGTCAAATGAAGCATATGCTAGTGTTCTAAGGAAAAGGAATATTGCATAATAATAGAAATCATTCCAGTACAATGTCATCATTGCTACACACTACTCTCCTTTTCAATATTTCAACAACAAA-ACAGA--TTTTTACATGAC-TTTGCT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190325407 150 - 190850796 GAGATGGTCAAATGAAGTACATGCTCATGCTTTAGGTAGAAGGATTATTGCATGATGATATAAATCATTCCGATACGATGTCATCATCGCTACACAATACCCTCCTTTTCAATATTTCAACAGCAAA-ACAGA--TTTGTACACGAG-TTTGCT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87403142 129 - 129401213 TAGATATTCC----AAGT-----CCAGCAACTCAAGTAAAGAGGATACTGCACA---AAATATGTCATTCTGG-----------AATTGGTATATAGTGTTCTCCCTTGCCTTACTTCAAAAACTAA-ATGGAATGTTTAAGATGAG-TTTAGT
i mm10.chr8                C 0 I 862
s canFam3.chr16             17737594 147 -  59632846 GAAATATTCAAATGAGGTGAATGTTAGCATTTTAGTTAAAAGGGGTACTACCGGATGATATTAATTTTTCCAGGATAATAACCTAATTGCTACAAAATACTTTTCTTTT--ATATAATAACAAAAAATAGAAA--TTCTTAGATGAC---TGCT
i canFam3.chr16            C 0 C 0

a score=224787.000000
s hg38.chr4_KI270925v1_alt      6268 71 +    555799 CTGCAGACAGTGAGTAGTCAAGGCAGAAAGCACTGGAATTTCCAAACATTTTATCTGCGTCTTGTAAAATC
s panTro4.chr4             192703931 71 + 193495092 CTGCAGACAGTGAGTAGTCAAGGCAGAAAGCACTGGAATTTCCAAACATTATATCTGTGTCTTGTAAAATC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197814217 71 + 198332218 CTGCAGACAGTGAGTAGTCAAGGCAGAAAGCACTGGAATTTCCAAACATTGTATCTGTGTCTTGTAAAGTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113585624 71 + 115148730 CTGCAGACAGTGAGTAGTCAAGGCAGAAAGCACTCGAATCTCCAAACATTCTATCTGTGCCTTGTAAAGTC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183412998 71 + 184069350 CTGCAGACAGTGAGTGGTCAATGCTGAAAGCACTGGAATTTCCAGACATTATATCTGTGCCTTGTAAAGTC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188793180 71 + 189454096 CTGCAGACAGTGAGTGGTCAATGCTGAAAGCACTGGAATTTCCAGACATTATATCTGTGCCTTGTAAAGTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178220334 71 + 178775436 CTGCAGACAGTGAGTGGTCAATGCTGAAAGCACTGGAATTTCCAGACATTATATCTGTGCCTTGTAAAGTC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135161383 71 + 135778131 CTGCAGACTGTGAGTGGTCAACGCGGAAAGCGCTGGAATTTCCAGACATTATATCTGTGCCTTGTAAAGTC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190325557 67 - 190850796 CTGCAGACGGTGAGT----AAGGCAGAAAGCGCTGGACTCTCCAAATATTATATCTGCACCTTGAAAAGTC
i calJac3.chr3             C 0 I 325
s canFam3.chr16             17737741 71 -  59632846 TTACTAGTGGTGAGCAGTCAAGGTAAACACTATTGAACTCTCCAACTATTATACCTGTGTCCTGTAAAGCC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87403271 862 - 129401213 I

a score=343635.000000
s hg38.chr4_KI270925v1_alt      6339 115 +    555799 ACATGAATGATGAGACCTCATGAACAATAATTTGGGTCAGGTGACATGGTGTGTCTGCACATACAACATGCAGGCTCAATCTTTAACCACTTGG---GTTAGCCTGTAA---CATTGG-----aaa
s panTro4.chr4             192704002 115 + 193495092 ACATGAATGATGAGACCTCAGGAACAATAATTTGGGTCAGGTGACATGGTGTGTTTGCACATACAACATGCAGGCTCAATCTTTAACCACTCGG---GTTAGCCTGTAA---CATTGG-----AAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197814288 120 + 198332218 ACATGAATGATGAGACCTCATGAGCAATAATTTGGGTCAGGTGACATGGTGTGTCTGCACATACAACATGCAGGCTCTATCTTTAACCACTCAA---GTTAGCCTGTAA---CATTGGGaaaaaaa
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113585695 114 + 115148730 ACATGAATGATGAGACCTCATGAGCAATAATTTGGGTCAGGTGACATGGTG-GTCTGCAGATACAACATGCAGGCTCTATCTTTAGCCACTCAG---GTTAGCTTGTAA---CATTGG-----AAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183413069 115 + 184069350 ACATGAATGACGAGACCTGCTGACCAATAATTTGGATCAGGTGACATGGTGTGTCTGCCCATACAACATGCGGGCTCGATCTTTAACCCCTCAG---GTTAGCCTGTAA---CATTGG-----GGA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188793251 115 + 189454096 ACATGAATGACGAGACCTGCTGACCAATAATTTGGATCAGGTGACATGGTGTGTCTGCCCATACAACATGCGGGCTCGATCTTTAACCCCTCAG---GTTAGCCTGTAA---CGTTGG-----GGA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178220405 115 + 178775436 ACATGAATGACGAGACCTGCTGACCAATAATTTGGATCAGGTGACATGGTGTGTCTGCCCATACAACATGCGGGCTCGATCTTTAACCCCTCAG---GTTAGCCTGTAa---cgttgg-----gga
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135161454 115 + 135778131 ACATGAATGACGAGACCTGCTGACCGATAATTTGGGTCAGGTGACATGATGTGTCTGCCCATACAACATGCGGGCTCAATCTTTAACCCCTCAG---GTTAGCCTGTAA---CGTTGG-----GGA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190325949 115 - 190850796 ACATGAGTGATGAGACCTCCTGACCAATAATTTGGCTCAGGTGACATGGTGTGTGTGCACATACAACATGCAGGCTCAATCTTTAATCACTCAG---GTTAGCCTGTAA---CACTGG-----GGA
i calJac3.chr3             I 325 C 0
s canFam3.chr16             17737812 113 -  59632846 AGATGAATGATGAAACC-------AAAGTATTTGGGTCTGAC-ACCTAGTGGAGCAACACATCTAGAATATAGACTCAATCTTTTACCATTCAGGGTGGTGGCCTACAAGAGAAGTGG-----AAG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87403271 862 - 129401213 I

a score=2076107.000000
s hg38.chr4_KI270925v1_alt      6454 683 +    555799  
s panTro4.chr4             192704117 684 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197814408 739 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113585809 648 + 115148730  
i nomLeu3.chr7b            C 0 I 192
s rheMac3.chr5             183413184 671 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188793366 671 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178220520 675 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135161569 676 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190326064 674 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87404133 667 - 129401213  
i mm10.chr8                I 862 C 0
s canFam3.chr16             17737925 698 -  59632846  
i canFam3.chr16            C 0 C 0

a score=220191.000000
s hg38.chr4_KI270925v1_alt      7137  64 +    555799 ttaact---------------------------tattcactcctc--------acaacaacccaatga----------------------agtag-----------------------ctgctatgattatacccatttcaaaa
s panTro4.chr4             192704801  64 + 193495092 ttaact---------------------------tattcactcctc--------acaacaacccaatga----------------------agtag-----------------------ctgctatgattatacccatttcaaaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197815147  64 + 198332218 ttaact---------------------------tattcattcctc--------acaacaacccaatga----------------------agtag-----------------------ctgctatgattatacccatttcaaaa
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113586649  64 + 115148730 ttaact---------------------------tattcactcctc--------acaacaacccagtga----------------------agtag-----------------------ctgctatgcttatatgcatttcaaaa
i nomLeu3.chr7b            I 192 C 0
s rheMac3.chr5             183413855  64 + 184069350 ttaact---------------------------tactcagtcctc--------acaacaacccaatga----------------------agcag-----------------------ctgctatgattatacccatttcaaaa
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188794037  64 + 189454096 ttaact---------------------------tactcagtcctc--------acaacaacccagtga----------------------agcag-----------------------ctgctatgattatacccatttcaaaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178221195  64 + 178775436 ttaact---------------------------tactcagtcctc--------acaacaacccaatgA----------------------AGTAG-----------------------CTGCTATGATTATAcccatttcaaaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135162245  64 + 135778131 ttaact---------------------------tattcattcctc--------acaacaacccaatga----------------------aatag-----------------------ctgctatgattatgcccatttcaaaa
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190326738  64 - 190850796 ttaacg---------------------------tattcattcctc--------acaacaacccgatga----------------------agtag-----------------------ctgctatgattatgcccatttcaaaa
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87404800 144 - 129401213 TTAACTACTGCTGTAATAATAACAGCATACTGGCATTAATCCCTCCTGTTATAATAACAGCACAGTGGTATTAATCCCTCCTGTTATAATAATAGTATAGCTATATTATTAACTCCTCCTGTTATAAGTATAGCTATATTAGTA
i mm10.chr8                C 0 I 165
s canFam3.chr16             17738623  64 -  59632846 ttaact---------------------------tatttattcccc--------acaacaacctcgtga----------------------agcag-----------------------tcactatgattatcctcatttccaag
i canFam3.chr16            C 0 C 0

a score=118295.000000
s hg38.chr4_KI270925v1_alt      7201 43 +    555799 t-------gtaaaaaatgaggcacaaaaa----agttaaaa------actaaaa-----------ctgtcc
s panTro4.chr4             192704865 43 + 193495092 t-------gtaaaaaatgaggcacaaaaa----agttaaaa------actaaaa-----------ctgtcc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197815211 43 + 198332218 t-------gtaaaaaattaggcacaaaaa----agttaaaa------actaaaa-----------ctgtcc
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113586713 43 + 115148730 t-------gtaaaaaattagacacaaaaa----agttaaaa------actaaaa-----------ctgtcc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183413919 43 + 184069350 t-------gtaaaaaatgaggcacctaaa----agttaaaa------actaaaa-----------ctgtcc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188794101 43 + 189454096 t-------gtaaaaaatgaggcacctaaa----agttaaaa------actaaaa-----------ctgtcc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178221259 43 + 178775436 t-------gtaaaaaatgaggcacataaa----agttaaaa------actaaaa-----------ctgTCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135162309 43 + 135778131 t-------gtaaaaaatgaggcacataaa----agttaaaa------actaaaa-----------ctgtcc
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190326802 50 - 190850796 ttaaaaaaaaaaaaaatgagacgcattaa----agttaaaa------actggaa-----------gtgtcc
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17738687 65 -  59632846 ------taaaaataattgaggcacatagaacctagttaaAATTGGTGTCTAAAAAAAAAAAAATGGTGTCT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87404944 165 - 129401213 I

a score=1727567.000000
s hg38.chr4_KI270925v1_alt      7244 557 +    555799  
s panTro4.chr4             192704908 557 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197815254 557 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113586756 630 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183413962 557 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188794144 557 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178221302 554 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135162352 555 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190326852 538 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87405109 581 - 129401213  
i mm10.chr8                I 165 I 161
s canFam3.chr16             17738752 590 -  59632846  
i canFam3.chr16            C 0 C 0

a score=558778.000000
s hg38.chr4_KI270925v1_alt      7801 196 +    555799 cacagaat-tt-tttttatgtaacatacttgtgcttaaaagtcttttattgataacccaatcata-ttctgcaagcaatattctagatataaatttaaatttgttatacttagtatttcatgtgaccataagtcacgtaa------------------------atatttaagaagttcttcagaattgtattatcattacggttattattagaactcaattt-
s panTro4.chr4             192705465 192 + 193495092 cacagaat-tt-tttttatgtaacacacttgtgcttaaaagtcttttattgataacccaatcata-ttcttcaagcaatattctagatataaattgaaatttgttatac----tatttcatgtgaccataagtcacgtaa------------------------atatttaagaagttcttcagaattgtattatcattatggttattattagaactcaattt-
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197815811 196 + 198332218 cacagaat-tt-ttttaatgtaatatacttgtgcttaaaagtcttttattgataacccaatcata-ttcttcaagcaatattgtagatataaattgaaatttgttatacttagtatttcatgtgaccataagtcacgtaa------------------------gtatttaaaaagttcttcagaattgtattatcattatggttattattagaactcaattt-
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113587386 197 + 115148730 tagagaatatt-tttttatgtaatatacttgtgcttaaaagtcttttattggtaacccaatcata-ttcttcaagcaatattctagatataaattgaaatttgttatacttagtatttcatgtgaccacaagtcaggtaa------------------------gtatttaaaaagttcttcagaattgtattatcattatggttattattagaactcaattt-
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183414519 191 + 184069350 cacagaatatt-aatttatgtaatatacttgtgcttaaaagtcttttatcaataacccaatcata-ttcttcaagcaacattctagatatacattgaaatttgttatatt---tatttcatgtggccataagtcacataa------------------------gtatttaacaatttcttcagaactgtattattgttatag---ttcttagaactcaattt-
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188794701 191 + 189454096 cacagaatatt-aatttatgtaatatacttgtgcttaaaagtcttttatcaataacccaatcata-ttcttcaagcaacattctagatatacattgaaatttgttatatt---tatttcatgtggctataagtcacataa------------------------gtatttaacaatttcttcagaactgtattattgttatag---ttcttagaactcaattt-
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178221856 191 + 178775436 CACAGaatatt-aatttatgtaataTACTTGTGCTTAAAAGTCTTTTATCAATAACCCAATCATA-TTCTTCAAGCAACATTCTAGATATACATTgaaatttgttatatt---tatttcatgtgaCCATAAGTCACATAA------------------------GTATTTAACAATTTCTTCAGAACTGTATTATTGTTATGG---TTCTTAgaactcaattt-
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135162907 191 + 135778131 cacagaacatt-aatttatgtaatatacttatgcttaaaagtcttttatcaataacccaatcgta-ttcttcaagcaacattctagatatacattgaaatttgttatatt---tatttcatgtgaccataagtcacataa------------------------gtatttaacaatttcttcagaactgtattattgttatgg---ttcttagaactcaattt-
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190327390 213 - 190850796 cacagaatattatttttatgtaatatacttgtgcttaaaagtcttttactgataatccaatcata-tttttcaaggaatattctaaatacaaattgcaatttgttattct---tatttcatgtaaccctaagttacataagtatttcatgtgaccataagtcatgtatttaaaaat---ttcagaattatattattgt---ggttattattagaacccaattt-
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17739342 190 -  59632846 cacagattatt---tttatgtaatgtacttatgcttaaaaactttttattgatcacttaatcatattttttcagatgatgctctaaatataaatcaaaatgtattattct---tattttatgctaccttaattctc-caa------------------------gagtttaa-aattttgtcag--ttgaattttcataacaattattattagaactcaagttt
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87405690 161 - 129401213 I

a score=1010142.000000
s hg38.chr4_KI270925v1_alt      7997 308 +    555799 taaaaacacat-aaatattttttaga----------ttttaagtgatt--gataaacctgaagtcagttattattggaaatgcatctcttcatgagatgaatgg--------------agctt--------att-----------ttttccagtgggtcacatttccacagatgttactgctacaatgaggtcggattcaacatccgttttattcctacttttcacttttatagatgtaatttct-aaaaccttgttcccataaacaagtagatggaaattgaaggagtttgtttatagcaacgtcactc--aatggttttaaatccttttgaa---gtatatgctgaaaattccataat
s panTro4.chr4             192705657 308 + 193495092 taaaaacacat-aaatattttttaga----------ttttaagtgatt--gataaacctgaagtcagttattattggaaatgcatctcttcatgagatgaatgg--------------agctt--------att-----------ttttccagtgggtcacatttccacggatgttactgctacaatgaggtcggattcaacatccgttttattcctacttttcacttttatagatgtaatttct-aaaaccttgttcccataaacaagtagatggaaattgaaggagtttgtttatagcaacgtcactc--aatggttttaaacccttttgaa---gtatatgctgaaaattccataat
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197816007 308 + 198332218 taaaagcacat-aaatattttttaaa----------ttttaagtgatt--gataaacctgaagtcagttattattggaaatgcatctcttcatgagatgaatgg--------------agctt--------att-----------ttttccagtgggtcacatttccacagatgttactgctacagtgaggttggattcaacatccgttttattcctacttttcacttttatagatgtaatttct-aaaactttgttcccataaacaagtacatggaaattgaaggagttcgtttatagcaacgtcactc--aatggttttcaatccttttgaa---gtatatgctgaaaattccataat
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113587583 306 + 115148730 taaaa--acat-aaatattttttaaa----------ttttaagtgatt--gataaacctgaagtcagttattactggaagtgcgtctcttcatgagatgaatgg--------------agctt--------att-----------ttttccagtgggtcacatttccacggatgttactgctacaatgaggtcggattcaacatccgttttattcctacttttcacttttatagatgtaatttat-aaaaccttattcccgtaaacaagtagatggaaattgaaggagtttgtttatagcaacatcactc--agtggttttaaatccttttgaa---gtatatgctgaaaattccataat
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183414710 307 + 184069350 taaaaacacat-gaatatttttaaaa----------ttttaagtgatt--gataaacctgaagtcagttgttcttagaaatgcatctcttcatgagatgaatgg--------------agctg--------att-----------ttttccagtgcttcatatttccacggatgttactgctaccatgaggttggattcaacatccgtttaattcctg-ttttcacttttatagatgtaatttct-aaaaccttgttcccataaacaagtagatggaaattgaagcagtttggttatagcaacgtcactc--aactgttttatatccttttgaa---gtatatgctgaaaattccataat
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188794892 307 + 189454096 taaaaacacat-gaatatttttaaaa----------ttttaagtgatt--gataaacctgaagtcagttgttcttagaaatgcatctcttcatgagatgaatgg--------------agctg--------att-----------ttttccagtgcttcatatttccacggatgttactgctaccatgaggttggattcaacatccgtttaattcctg-ttttcacttttatagatgtaatttct-aaaaccttgttcccataaacaagtagatggaaattgaagcagtttggttatagcaacgtcactc--aactgttttatatccttttgaa---gtatatgctgaaaattccataat
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178222047 307 + 178775436 taaaaacacat-gaatattttttaaa----------ttttaagtgatt--GATAAACCTGAAGTCAGTTGTTATTAGAAATGCATCTCTTCGTGAGATGAATGG--------------AGCTG--------ATT-----------TTTTCCAGTGCGTCATATTTCCACGGATGTTACTGCTACCATGAGGTTGGATTCAACATCCGTTTAATTCCTG-TTTTCGCTTTTATAGATGTAATTTCT-AAAGCCTTGTTCCCATAAACAAGTAGATGGAAATTGAAGCAGTTTGGTTATAGCAACGTCACTC--AACTGTTTTATATCCTTTCGAA---GTATATGCTGAAAATTCCGTAAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135163098 307 + 135778131 taaaaacacat-gaatattttttaaa----------ttttaagtgatt--gataaacctgaagtcagttgttattagaaatgcatctcttcatgagatgaatgg--------------agctg--------att-----------ttttccagtgcgtcatatttccacggatgttactgctaccatgaggttggattcaacatctgtttaattcctg-ttttcacttttatagatgtaatttct-aaaaccttgttcccataaacaagtagatggaaattgaagcagtttggttatagcaacgtcactc--aattgttttatatccttctgaa---gtatatgctgaaaattccgtaat
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190327603 312 - 190850796 taaaaacacataaaatgtttttttaa----------gtttaagtaatt--aataaacctaaagttagttattattggaagtgaatttcttaatgagatgaatgg--------------ggctggcttatttatc-----------ttttccagtgggtcatattttgatggacattactgctacaatgatatcagattcaacatctattttattcccacttttcaccgttatagatgtagtttctgaaaaccttcttcccataaacaagtagatg------gaaggagtttggttatagcaacatcactc--aattattttaaatctttttgca---tcatgtgtggaaaattccataat
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87405851 302 - 129401213 taaaataaaat-aaaTGTTTTTCTGAATAATATTCTTTTTCAAAACCTAAAATAAACTTTAA-TCAATTTTCCCTGGAATGGTACTTCAC--TAAAATGGCAGGTATTCTTATTTACTTGCTT--------GTT-----------TTTAGTTGTGTGATATATCCCCACA------------ACAATGA---------caata------ttatggctacttttcatttttgtagaagtaattattgaaaacctaatt--tatcaataagtaaatag-aactgaaagagtttggttat-gcaatatcagtt--aaccatttaaaggttttgcaaacttgtgcatgt--aaaatccaacagt
i mm10.chr8                I 161 C 0
s canFam3.chr16             17739532 320 -  59632846 taaaaacataa-atatatttttaaat----------gtgtaagtaatt--aataattctaaagtcaattttcattggaaatacatctcttaataaaatggatgg--------------agctg--------atttacctatttagtttttgactgggacatatcaccatggttattactgctagaatgagatgaaattaaacatcaatttcattcccacattttattttaatagatgcaatctctaaaaaccttactcgcataaataagtatatgaaaatggaa--agtttggtcatagccatgtcaatttaaaaaaaaaaaagtccttctgaa---ttatctattacaaatttcatagt
i canFam3.chr16            C 0 I 323

a score=61624.000000
s hg38.chr4_KI270925v1_alt      8305 18 +    555799 cattta-cattaacaacaa
s panTro4.chr4             192705965 18 + 193495092 cattta-cattaacaacaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197816315 18 + 198332218 cattta-cattaacaacaa
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113587889 18 + 115148730 cattta-cattaacaacaa
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183415017 18 + 184069350 cattta-cattaacaacag
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188795199 18 + 189454096 cattta-cattaacaacag
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178222354 18 + 178775436 CATTTA-CATTAACGACAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135163405 18 + 135778131 cattta-cattaacaacag
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190327915 18 - 190850796 cattta-cattaacaaCAG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87406153 19 - 129401213 aatttatcattaaaaaAAA
i mm10.chr8                C 0 I 4167
e canFam3.chr16             17739852 323 -  59632846 I

a score=228738.000000
s hg38.chr4_KI270925v1_alt      8323 82 +    555799 tcataggtaattatctagcagcttctcctccagagcaaagaagtggaccctacctggcccacgaaagcattttcacgcagtc
s panTro4.chr4             192705983 82 + 193495092 tcataggtaattatctagcagcttctcctccagagcaaagaagtggaccctacctggcccacgaaagcattttcacgcagtc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197816333 82 + 198332218 tcataggtaattatctagcagcttctcctccacagcaaagaagtggacactacctggcccacgaaagcattttcacgcagtc
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113587907 82 + 115148730 tcataggtaattatctagcagcttctcctccagggcaaagaagtggacactacctggcccacgaaaacattttcatgcagtc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183415035 82 + 184069350 tcataggtaatcatccagcagcttctcctccagagcaaagcagcggacactacctggtccacgaaagcattttcacgcagtc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188795217 82 + 189454096 tcataggtaatcatccagcagcttctcctccagagcaaagcagcggacactacctggtccacgaaagcattttcacgcagtc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178222372 82 + 178775436 TCATAGGTAATCATCCAGCAGCTTCTCCTCCAGAGCAAAGCAGCGGACACTACCTGGTCCACGAAAGCATTTTCACGCAGTC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135163423 82 + 135778131 tcataggtaatcatccagcagcttctcctccagagcaaagaagcggacactacctggtccacgaaagcattttcacgcagtc
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190327933 60 - 190850796 TCAGAGGTAATCATCCAGCAGCTTCTCCTCCGGAGC----------------------CCACAAAAGCACTGTTATGCAGTC
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87406172 4167 - 129401213 I
e canFam3.chr16             17739852 323 -  59632846 I

a score=4242.000000
s hg38.chr4_KI270925v1_alt      8405 2 +    555799 at
s panTro4.chr4             192706065 2 + 193495092 at
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197816415 2 + 198332218 at
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113587989 2 + 115148730 at
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183415117 2 + 184069350 at
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188795299 2 + 189454096 at
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135163505 2 + 135778131 at
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190327993 2 - 190850796 GT
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87406172 4167 - 129401213 I
e canFam3.chr16             17739852 323 -  59632846 I
e papAnu2.chr5             178222454 0 + 178775436 C

a score=3000.000000
s hg38.chr4_KI270925v1_alt      8407 2 +    555799 cg
s nomLeu3.chr7b            113587991 2 + 115148730 cg
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183415119 2 + 184069350 cg
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188795301 2 + 189454096 cg
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135163507 2 + 135778131 cg
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190327995 2 - 190850796 CG
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87406172 4167 - 129401213 I
e canFam3.chr16             17739852 323 -  59632846 I
e papAnu2.chr5             178222454 0 + 178775436 C
e ponAbe2.chr4             197816417 0 + 198332218 C
e panTro4.chr4             192706067 0 + 193495092 C

a score=24440.000000
s hg38.chr4_KI270925v1_alt      8409 317 +    555799 gagtcattttc-----------------------------------------------------tttttt--------------tttttttttttttttttttgagacggagtctcgctctgtcgcccaggctggagtgctgtggcgcgatctcggctcactgcaagctccgcctcccgggttcatgccattctcctgcctcagcctcccaagtagctgggactacaggcgcgcgccaccacacccggctaattttttgtatttttagtagagacggggtttcaccgtgttagccgggatggtctcgatctcctgacctcgtgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggcc
s nomLeu3.chr7b            113587993 384 + 115148730 gagtcattTTCACGCAGTCATCATCAGAGCCATGAACTCTCTCAACAGTGATATCGCTAGTCCTTCCTTTAGGGCTACTCCAGGttttttgttttttttttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggcgccatctcggctcactgcaagctccgcctcccgggttcacaccattctcctgcctcagcctcccgagtagttgggactacaggcgcccgccaacacgcccggctaattttttgtatttttagtagagatggggtttcaccgtgttagccaagatggtcttgatctcctgacctcgtgatccgcctgccttggcctcccaaagtgctgagattacaggcttgagccactgcgcccggcc
i nomLeu3.chr7b            C 0 T 386
e mm10.chr8                 87406172 4167 - 129401213 I
e canFam3.chr16             17739852 323 -  59632846 I
e calJac3.chr3             190327997   0 - 190850796 C
e chlSab2.chr7             135163509   0 + 135778131 C
e papAnu2.chr5             178222454   0 + 178775436 C
e macFas5.chr5             188795303   0 + 189454096 C
e rheMac3.chr5             183415121   0 + 184069350 C
e ponAbe2.chr4             197816417   0 + 198332218 C
e panTro4.chr4             192706067   0 + 193495092 C

a score=10885.000000
s hg38.chr4_KI270925v1_alt      8726 21 +    555799 CGGAGTCATTTTCATGCAGTC
s panTro4.chr4             192706067 21 + 193495092 cggagtcattTTCATGCAGTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197816417 21 + 198332218 cggagtcattTTCACGCAGTA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113587991 21 + 115148730 cggagtcattTTCACGCAGTC
i nomLeu3.chr7b            T 386 C 0
e mm10.chr8                 87406172 4167 - 129401213 I
e canFam3.chr16             17739852 323 -  59632846 I
e calJac3.chr3             190327997  0 - 190850796 C
e chlSab2.chr7             135163509  0 + 135778131 C
e papAnu2.chr5             178222454  0 + 178775436 C
e macFas5.chr5             188795303  0 + 189454096 C
e rheMac3.chr5             183415121  0 + 184069350 C

a score=1862.000000
s hg38.chr4_KI270925v1_alt      8747 3 +    555799 GTC
s panTro4.chr4             192706088 3 + 193495092 GTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197816438 3 + 198332218 GTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113588012 3 + 115148730 ATC
i nomLeu3.chr7b            C 0 C 0
s canFam3.chr16             17740175 3 -  59632846 gtt
i canFam3.chr16            I 323 C 0
e mm10.chr8                 87406172 4167 - 129401213 I
e calJac3.chr3             190327997 0 - 190850796 C
e chlSab2.chr7             135163509 0 + 135778131 C
e papAnu2.chr5             178222454 0 + 178775436 C
e macFas5.chr5             188795303 0 + 189454096 C
e rheMac3.chr5             183415121 0 + 184069350 C

a score=3500.000000
s hg38.chr4_KI270925v1_alt      8750 4 +    555799 ATCA
s panTro4.chr4             192706091 4 + 193495092 ATCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197816441 4 + 198332218 ATCA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113588015 4 + 115148730 ATCA
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178222454 4 + 178775436 ATCA
i papAnu2.chr5             C 0 C 0
s canFam3.chr16             17740178 4 -  59632846 agct
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87406172 4167 - 129401213 I
e calJac3.chr3             190327997 0 - 190850796 C
e chlSab2.chr7             135163509 0 + 135778131 C
e macFas5.chr5             188795303 0 + 189454096 C
e rheMac3.chr5             183415121 0 + 184069350 C

a score=149654.000000
s hg38.chr4_KI270925v1_alt      8754 49 +    555799 GAGCCATGAACTCTCTCAAC---AGTGATATCCCTCGTCCTTCCTTTAGGGC
s panTro4.chr4             192706095 49 + 193495092 GCGCCATGAACTCTCTCAAC---AGTGATATCCCTCGTCCTTCCTTTAGGGC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197816445 49 + 198332218 GAGCCATGAACTCTCTCAAC---AGTGATATCTCTAGTCCTTCCTTTAGGGC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113588019 49 + 115148730 GAGCCATGAACTCTCTCAAC---AGTGATATCGCTAGTCCTTCCTTTAGGGC
i nomLeu3.chr7b            C 0 I 309
s rheMac3.chr5             183415121 49 + 184069350 gagccaggagctctctcaaC---AGCGCTACCCCTAGTCCTTCCTTTAGGGC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188795303 49 + 189454096 gagccaggagctctctcaGC---AGCGCTACCCCTAGTCCTTCCTTTAGGGC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178222458 48 + 178775436 GAGCCAGGAACTCTCTCAAC---AGCGCTACCCC-AGTCCTTCCTTTAGGGC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135163509 49 + 135778131 gagccatgaactctctcCAC---AGCGCTATCCCTAGTCCTTCCTTTAGGGC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190327997 49 - 190850796 GAACCATGAActctctcaac---agcaatattccaagtccttcctttatggc
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17740182 52 -  59632846 gagccacacactctctcaaccctgatgacatttcagacccttccttaatggc
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87406172 4167 - 129401213 I

a score=2921356.000000
s hg38.chr4_KI270925v1_alt      8803  977 +    555799  
s panTro4.chr4             192706144  969 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197816494  956 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113588377  967 + 115148730  
i nomLeu3.chr7b            I 309 C 0
s rheMac3.chr5             183415170  967 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188795352  968 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178222506  969 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135163558  969 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190328046  951 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17740234 1051 -  59632846  
i canFam3.chr16            C 0 I 398
e mm10.chr8                 87406172 4167 - 129401213 I

a score=106089.000000
s hg38.chr4_KI270925v1_alt      9780 36 +    555799 ctgtgttcatgtgccttcctctcctctgcttctagg
s panTro4.chr4             192707113 36 + 193495092 ctgtgttcatgtgccttcctctcctctgcttctagg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197817450 36 + 198332218 ctgtgttcatgggccttcctctcctctgcttctagg
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113589344 36 + 115148730 atgtgttcatgtgccttcctctgctctgcttctagg
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183416137 36 + 184069350 ctgtgtccgtgtgccttcctctcctctgcttctagg
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188796320 36 + 189454096 ctgtgtccgtgtgccttcctctcctctgcttctagg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178223475 36 + 178775436 CTGTGTCTGTGTGCCTTCCTCTCCTCTGCTTCTAGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135164527 36 + 135778131 ctgtgtccatgtgccttcctctcctctgcttctagg
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190328997 36 - 190850796 ctgtgttcatgtgccctcatctcctgttcttctaGA
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87406172 4167 - 129401213 I
e canFam3.chr16             17741285 398 -  59632846 I

a score=3102880.000000
s hg38.chr4_KI270925v1_alt      9816  994 +    555799  
s panTro4.chr4             192707149 1068 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197817486 1018 + 198332218  
i ponAbe2.chr4             C 0 M 428
s nomLeu3.chr7b            113589380  986 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183416173  994 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188796356  994 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178223511  993 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135164563  993 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190329033  911 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87410339 1047 - 129401213  
i mm10.chr8                I 4167 I 1
s canFam3.chr16             17741683  997 -  59632846  
i canFam3.chr16            I 398 C 0

a score=98493.000000
s hg38.chr4_KI270925v1_alt     10810 36 +    555799 CTCTCCAATTGGAAAAGTAAGAATTTTGGGGAAAAA
s panTro4.chr4             192708217 36 + 193495092 CTCTCCAATTGGAAAAGTAAGAATTTTGGGGAAAAA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113590366 36 + 115148730 GTCTCCAATTGGAAAAGTAAGAATTTTGGGGAAAAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183417167 36 + 184069350 CTCTCCAATGGAAAAAGTAAGAATTTTGGGGAAAAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188797350 36 + 189454096 CTCTCCAATGGAAAAAGTAAGAATTTTGGGGAAAAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178224504 36 + 178775436 CTCTCCAATGGAAAAAGTAAGAATTTTGGGGAAAAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135165556 36 + 135778131 CTCTCCAATGGAAAAAGTAAGAATTTTGGGGAAAAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190329944 36 - 190850796 CCCTCCAATTGGAAAAGTAAGAATTTTTGGGGGGGG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87411387 36 - 129401213 GTGCTAAAGTTaaaaagaaagaaagaaagagagaga
i mm10.chr8                I 1 I 230
s canFam3.chr16             17742680 36 -  59632846 CACCCCAATAGGACAAGGAAGAATTTGAGGGGAAAA
i canFam3.chr16            C 0 C 0
e ponAbe2.chr4             197818504 428 + 198332218 M

a score=270571.000000
s hg38.chr4_KI270925v1_alt     10846 87 +    555799 ACACTTTTGCCTAGAAAAGCATATTCCATAGAGGACAGATGGAAAGGATATTTGTGTTTAATTTAAATGTTCTGCAAAAGTTCACTC
s panTro4.chr4             192708253 87 + 193495092 ACACTTTTGCCTAGAAAAGCATATTCCATAGAGGACAGATGGAAAGGATATTTGTGTTTAATTTAAATGTTCTGCAAAAGTTCACTC
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113590402 87 + 115148730 ACACTTTTGCCTAGAAAAGCATATTCCACAGTGGACAGACGGAAAGGATATTTGTGCTTAACTTAAATGTTCTGCAAAAGTTCACAC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183417203 87 + 184069350 GCACTTTTGCCTAGAAGAGCGTAGTCCACAGAGGACAGATGGAAAGGATATTTGTGTTTAATTTAAATGTTCTGCAAAAGTTCACAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188797386 87 + 189454096 GCACTTTTGCCTAGAAGAGCATAGTCCACAGAGGACAGATGGAAAGGATATTTGTGTTTAATTTAAATGTTCTGCAAAAGTTCACAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178224540 87 + 178775436 GCACTTTTGCCTAGAAGAGCGTAGTCCACAGAGGACAGATGGAAAGGAtatttgtgtttaatttaaaTGTTCTGCAGAAGTTCACAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135165592 87 + 135778131 GCACTTTTGCCTAGAAGAATGTAGTCCACAGAGGACAGATGGAAAGGATATTTGTGTTTAATTTAAATGTTCTGCAAAAGTTCACAC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190329980 80 - 190850796 AAAGTTTTGCCT-------CTTATTCCATAGAGGACAGATGGAAAGGATATTTGTGTTTAATGTAAATGTTCTGCAAAAGTTCACAC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87411653 87 - 129401213 AGAATTTTGTCCAGAATAACTTTTTCCATAGAGGACAGATGGGGAGGATATTTGTGCTTAATTTCAATGTTCTGCAGAAGTTAACAC
i mm10.chr8                I 230 C 0
s canFam3.chr16             17742716 72 -  59632846 ---------------AGGTTTTATCCTATAGAGGACACATGAAGAGGATAGTTGCATTTAATTCAAATGTTCTACAAAAGTTAACAC
i canFam3.chr16            C 0 C 0
e ponAbe2.chr4             197818504 428 + 198332218 M

a score=7949653.000000
s hg38.chr4_KI270925v1_alt     10933 2123 +    555799  
s panTro4.chr4             192708340 2125 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197818934 2135 + 198332218  
i ponAbe2.chr4             M 428 C 0
s nomLeu3.chr7b            113590489 2122 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183417290 2119 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188797473 2117 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178224627 2119 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135165679 2120 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190330060 2085 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87411740 2146 - 129401213  
i mm10.chr8                C 0 I 48
s canFam3.chr16             17742788 2220 -  59632846  
i canFam3.chr16            C 0 C 0

a score=237200.000000
s hg38.chr4_KI270925v1_alt     13056 77 +    555799 ATTTTTACATGATCTCC---CTCTACTGAACCCCTCTGAATCTAGTAGGCCATTTGTGTACAAATGTGACAATTTGTTTT
s panTro4.chr4             192710465 77 + 193495092 ATTTTTACATGATCTCC---CTCTACTGAACCCCTCTGAATCTAGTAGGCCATTTGTGTACAAATGTGACAATTTGTTTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197821069 77 + 198332218 ATTTTTACATGATCTCC---CCCTACTGAACACCTCTGAATCTAGTAGGCTATTTGTGTACACATGTGACAATTTGTTTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113592611 75 + 115148730 ATTTTTACATGATCTCC---CCCTACTGAACCCCTCTGAATCTAGTAGGCCATTTGTGTACAAATGTGACAATT--TTTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183419409 77 + 184069350 ATTTTTAGAACATCTCC---CTCTATTGAACCCCTCTGAATCGAGTAGACCATTTGTGTACAAATGTGACAATTTGTTTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188799590 77 + 189454096 ATTTTTAGAACATCTCC---CTCTATTGAACCCCTCTGAATCGAGTAGACCATTTGTGTACAAATGTGACAATTTGtttt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178226746 77 + 178775436 ATTTTTAGAACATCTCC---CTCTACTGAACCCCTCTGAATCGAGTAGACCATTTGTGTACAAATGtgacaatttgtttt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135167799 77 + 135778131 ATTTTTAGACCATCTCC---CTCTGTTGAACCCCTCTGAATCGAGTAGACCATTTGTGTACAAATGTGACCATTTGtttt
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190332145 77 - 190850796 ATTTTTAGAGGAGCTCC---CTCTACTGAACCCCTCTGAATACAGTAGTCAATTTGCGTACAAACGTGATGATCTGTTTT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17745008 80 -  59632846 ACTTTTGGAAGACCTCCCCACTCTCCTGAGCCCCTCTGGATGTTGTAGTGAGTTTCAGTACAAAGGTGAAGATTCATTAT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87413886 48 - 129401213 I

a score=132104.000000
s hg38.chr4_KI270925v1_alt     13133 51 +    555799 TTAAttttta---attttttaactttaggttc-gggggtatatgtgcatatttgt
s panTro4.chr4             192710542 54 + 193495092 TTAATTTTTAATTAttttttaactttaggttc-gggggtacatgtgcatatttgt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197821146 55 + 198332218 TTAAtttttaattattttttaactttaggttcagggggtacatgtgcatatttgt
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113592686 55 + 115148730 TTAATTTTTAATTAttttttaaatttaggttcagggggtacatgtgcatatttgt
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183419486 53 + 184069350 TTAATTTTCAGTTA-TTtttaacttcaggttc-cagggtacatgtgcatatttgt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188799667 53 + 189454096 ttaattttcagtta-tttttaacttcaggttc-cagggtacatgtgcatatttgt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178226823 53 + 178775436 ttaattttcagtta-tttttaacttcaggttc-cagggtacatgtgcatatcTGT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135167876 53 + 135778131 ttaattttcagtta-tttttaacttcaggttc-cagggtacatgtgcatatttgt
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190332222 54 - 190850796 TCAATTTTTAGTTATTTTTTGACTTTAGGTCA-AGGGGTATATGTGTATGTTCGT
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87413886 48 - 129401213 I
e canFam3.chr16             17745088  0 -  59632846 C

a score=1703041.000000
s hg38.chr4_KI270925v1_alt     13184 785 +    555799  
s panTro4.chr4             192710596 821 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197821201 774 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113592741 780 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183419539 777 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188799720 777 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178226876 775 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135167929 754 + 135778131  
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87413886  48 - 129401213 I
e canFam3.chr16             17745088   0 -  59632846 C
e calJac3.chr3             190332276   0 - 190850796 C

a score=42524.000000
s hg38.chr4_KI270925v1_alt     13969 16 +    555799 tgtTACGATTTGTTAG
s panTro4.chr4             192711417 16 + 193495092 tgtTACGATTTGTTAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197821975 16 + 198332218 tgtTATGATTTGTTAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113593521 16 + 115148730 ttttatgatttgttag
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183420316 16 + 184069350 tgttatgatttgttag
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188800497 16 + 189454096 tgttatgatttgttag
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178227651 16 + 178775436 tgttgTGATTTGTTAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135168683 16 + 135778131 tgttgtgatttgttac
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87413934 16 - 129401213 TATGATGATTTGTTTG
i mm10.chr8                I 48 C 0
e canFam3.chr16             17745088  0 -  59632846 C
e calJac3.chr3             190332276  0 - 190850796 C

a score=950596.000000
s hg38.chr4_KI270925v1_alt     13985 349 +    555799 TGTGCTTAAGCAACCATGTCCAAAAT----------GGTTAAGAATAGACAAATCACTCCCAAGAAAGACAAAGAACCGCACCATTAGTGGTTACCTGGTAACAT----ACAAGACCCTCAGACCTAGAGGGACTTCCT---CCAGAGACCGACGGCTGACATAGCAGGA-ACCCTACAGGCTGTCTCTCCTGATGC-CCCAG-TGCGCTGCTTTCAGGGAATGGTCCCACAGA-TGAATGTTCAGTCCTAGCAAATGAAAACT--CAACAACAAAATGTGTTGCTGTAATAGAAAAAGTAATGTTG-TCTGTCCAGACTTTCCATGGAAATATTGGTTTATACACTCACTATTGACAAATTAATCTCATTTG
s panTro4.chr4             192711433 349 + 193495092 TGTGCTTAAGCAACCATGTCCAAAAT----------GGTTAAGAATAGACAAATCACTCCCAAGAAAGACAAAGAACCACACCATTAGTGGTTACCTGGTAACAT----ACAAGACCCTCAGACCTAGAGGGACTTCCT---CCAGAGACCGACGGCTGACATAGCAGGA-ACCCTACAGGCTGTCTCTCCTGATGC-CCCAG-TGCGCTGCTTTCAGGGAATGGTCCCACAGA-TGAATGTTCAGTCCTAGCAAATGAAAACT--CAACAACAAAATGTGTTGCTCTAATAGAAAAAGTAATGTTG-TCTGTCCAGACTTTCCATGGAAATACTGGTTTATACACTCACTATTGACAAATTAATCTCATTTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197821991 349 + 198332218 TGTGCTTAAGCAACCATGTCCAAAAT----------GGTTAAGAATAGACAAATCACTCCCAAGAAAGACAAAGAACCTCACCATTAGTGGTTACCTGGTAACAT----ACAAGACCCTCAGATCTAGAGGGATTTCCT---CCAGAGACGGATGGCTGATATAGCAGGA-ACCCTACAGGCTGTCTCTCCTGATGC-CCCAG-TGCGCTGCTTTCAGAGAATGGTCCCACAGA-TGAATGTTCAGTCCTAGCAAATGAAAACT--CAACAACAAAATGTATTTCTCTAATAGAAAAAGTAATGTTG-TCTGTCCAGACTTTCCATGGAAATACTGGTTTGTACACTCACTATTGACAAATTAATCTCATTCA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113593537 349 + 115148730 tgtggttaAGCAACCATGTCCAAAAT----------GGTTAAGAATAGACAAATCACTCCCAAGAAAGACAAAGAACCACACCATTAGTGGTTACCTGATAACAT----ACAAGACCCTCAGACCTAGAGGGACTTCCT---CCAGAGACCGACGGCTGACATAGCAGGA-ACCCTACAGGCTGTCTCTCCCAATGC-CCCAG-TGCTCTGCTTTCAGGGAATAGTCCCGCAGA-TGAATGTTCGGTCCTAGCAAATGAAAACT--CAACAACAAAATGTGTTTCTCTAATAGAAAAAGTAATGTTG-TCTGTCCAGACTTTCCATGGAAATACCGGTTTATACACTCACTATTGACAAATTAATCTCATTCG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183420332 349 + 184069350 tgtggttaAGCAACCATGTCCAAAAT----------GGTTAAGAATGGATAACTCACTCCCAAGAAAGACAAAGAACCACACCATTAGTGGTTACCTGGTAGCAT----ACAAGACCCTCAGACCTAGAGTGACTTCCT---CCAGAGGTGGAATGCTGACATAGCAGGA-ACCCTACAGGCTGTCTCTCCCGATGC-CCCAG-TGCACTGCTTTCGTGGAATGGTCCCACAGA-TGAATGCTCAGTCCTAGCAAATGAAAACT--CAACAACAAAACATGTTTCTCTAATAGTAAAAGTAATGTTG-TCTGTCCAGAATTTCCATGGAAATACTGGTTTATACACTCACTATTGACAAATTAATCTCATTTG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188800513 349 + 189454096 tgtggttAAGCAACCATGTCCAAAAT----------GGTTAAGAATGGATAACTCACTCCCAAGAAAGACAAAGAACCACACCATTAGTGGTTACCTGGTAGCAT----ACAAGACCCTCAGACCTAGAGTGACTTCCT---CCAGAGGTGGAATGCTGACATAGCAGGA-ACCCTACAGGCTGTCTCTCCCGATGC-CCCAG-TGCACAGCTTTCGTGGAATGGTCCCACAGA-TGAATGCTCAGTCCTAGCAAATGAAAACT--CAACAACAAAACGTGTTTCTCTAATAGTAAAAGTAATGTTG-TCTGTCCAGAATTTCCATGGAAATACTGGTTTATACACTCACTATTGACAAATTAATCTCATTTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178227667 349 + 178775436 TGTGGTTAAGCAACTACGTCCAAAAT----------GGTTAAGAATAGATAAATCACTcccaagaaagacaaagaacCACACCATTAGTGGTTACCTGGTAGCAT----ACAAGACCCTCAGACCTAGAGGGACTTCCT---CCAGAGACGGACTGCTGACATAGCAGGA-ACCCTACAGGCTGTCTCTCCCGATGC-CCCAG-TGCACTGCTTTCGTGGAATGGTCCCACAGA-TGAATGCTCAGTCCTAGCAAAtgaaaact--caacaacaaaacgTGTTTCTCTAATAGTAAAAGTAATGTTG-TCTGTCCAGAATTTCCACAGAAATACTGGTTTATACACTCACTATTGACAAATTAATCTCAtttg
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135168699 349 + 135778131 tgtggttaAGCAACTATGTCCCAAAT----------GGTTAAGAATAGATAAATCGCTCCCAAGAAAGACAAAGAACTACACCATTAGTGGTTACCTGGTAGCAT----ACAAGACCCTCAGACCTAGAGGGACTTCCT---CCAGGGACGAAATGCTGACATAGCAGGA-ACCCTACAGGCTGTCTCTCCCGACGC-CCCAG-TGCGCTGCTTTCATGGAATGGTCCCACAGA-TGAATGCTCAGTCCTAGCAAAAGAAAACT--CAACAACAAAACGTGTTTCTCTAATAGAAAAAGTAATGTTG-TCTGTCCAGAATTTCCACAGAAATACTGGTTTATACACTCACTATTGACAAATTAATCTCATTTG
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87413950 316 - 129401213 TGTGTGGAGACATACATGCCCAAAATGGCAACCCAGGGTTAAGAATAAACAGGTAACCTCCAAGGAAGACAAGGCATT----CATTCCCGACTCCC-------------ACCTGAGCCCCACATT----GAGACCTGCTTGACTTGAGACC-----CTGACAGAGCAGCA-AACCCTAAGGGTGGCTCATCC------------TGCAATGTC-----GATCTATTCTTACAGAGTGGGTAGTCAGCTCTGACACATGGATA-----------ACAGCGTGTTTCTCTGATAAAAAAACTCCTGGCC-TCTGCCCTGATGGTCTTCAGAAATATTTGTTCATATACTAATTAATAGCACA-TAATTTATTTGG
i mm10.chr8                C 0 C 0
s canFam3.chr16             17745088 342 -  59632846 TATGATTAAACAGCTATATACAAAATAGCTATCTAGAGTTGAGAATTGACAAATCACTCCCAGGGAAGACAAGAAAGTAT-TCATGATTTCCCATCTAGTAACATAACAACAGAATTCCCAAACTTAAAGGGATTTCCC-----------------ATGGCACAACAGGGTACTCCAATGATTGCTTGTCCTAATACACACAGTTGGGCCATTTTCGGTGAATGGTTTAGCAAA-TGAATATTGAGTTCCAGCAAATGAAAAACAACAGCAACAAAATGTACTACTCTAAAAATA--------GTTGCTTTACCCAGACCTTCCCTGGAAATACCAGTTTACACGCTCACTACTAGGATATT----TTATTAG
i canFam3.chr16            C 0 I 273
e calJac3.chr3             190332276   0 - 190850796 C

a score=548317.000000
s hg38.chr4_KI270925v1_alt     14334 192 +    555799 AAAACAAGTAAAATATAG-CTACATGGTATAGCAAAAACATATGCCTTTTTGGCAATTGCTATATC-AAAAATAATTTACTCAACTACTTTTTACTGGCTGAATTGATcagttgttaaagccaaaata-atc--tggagtcatccttgaagttggtcacatctaatcaacctaaaagccagc--aatacagccttcaaa
s panTro4.chr4             192711782 192 + 193495092 AAAACAAGTAAAATATAG-CTACGTGGTATAGCAAAAACATATGCCTTTTTGGCAATTGCTATATC-AAAAATAATTTACTCAACTACTTTTTACTGGCTGAATTGATcagttgttaaagccaaaata-atc--tggagtcatccttgaagttggtcacatctaatcaacctaaaagccagc--aatacagccttcaaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197822340 192 + 198332218 AAAACAAGTAAAATATAG-CTACGTGGTATATCAAAAACATATGCCTTTTTGGCAATTGCTATATC-AAAAATAATTTACTTAACTACTTTTTACTGGCTGAATTGATcagttgttaaagccaaaata-atc--tggagtcatccttgagcttggtcacatctaatcaacctaaaacccatc--aatatagccttcaaa
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113593886 192 + 115148730 AAAACAAGTAAAATATAG-CTACGTGGTATATCAAAAACATATCCCTTTTTGGCAATTGCTATATC-AAAAATAATTTACTCAACTACTTTTTACTGGCTGAATTTATcggttgttaaagccaaaata-atc--tggagtcatccttgaacttgatcacatttaatccacctaaaacccacc--aatacagccttcaaa
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183420681 192 + 184069350 AAAACAAGTAAAATATAG-CTGCGTGGTATACCAAAAACATATCCCTTTTTGACAATTGCTATATC-AAAAATAATTTACTCAACTACTTTTTACTGGCTGAACTGATcggttgttaaagccaaaata-acc--tggggtcattcttgaacttggtcacatctaatcaacctaaaacccagc--aatacagccttcaaa
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188800862 192 + 189454096 AAAACAAGTAAAATATAG-CTGCGTGGTATACCAAAAACATATCCCTTTTTGACAATTGCTATATC-AAAAATAATTTACTCAACTACTTTTTACTGGCTGAACTGATcagttgttaaagccaaaata-acc--tggggtcattcttgaacttggtcacatctaatcaacctaaaacccagc--agtacagccttcaaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178228016 192 + 178775436 aaaacaagtaaaatatag-CTGTGTGGTATACCAAAAACATATCCCTTTTTGACAATTGctatatc-aaaaataatttactCAACTACTTTTTACTGGCTGAACTGATTGGTTGTTAAAGCCAAAATA-ACC--TGGAGTCATTCTTGAACTTGGTCACATCTAATCAACCTAAAACCCAGC--AATACAGCCTTCAAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135169048 192 + 135778131 AAAACAAGTAAAATATAG-CTGCGTGGTATACTAAAAACATATCCCTTTTTGACAATTGCTATATC-AAAAATAATTTACTCAACTACTTTTTACTGGCTGAACTGAtccgtcgttaaagccaaaata-acc--tggagtcattcttgaacttggtcacatctaatcaacctaaaacccagc--aatacagccttcaaa
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87414266 196 - 129401213 AAGAGACGTTCAACATAACCTGTAAATTACAGCAAACAAAGAAACCTTTTTGACAATTCTGTCATCAAAAAATAATTTATTGACCATGAGTTTATTAGGTAattttttcagttattaaaaaaaaaaac-acccttagatttat-cttgaacttttctacatgtaatcaatcaaaaactcagttaactata-cctctaaa
i mm10.chr8                C 0 C 0
s canFam3.chr16             17745703 192 -  59632846 aaaataTGTAAAATAGAG-CTATATATTATACTCAAACCGT--TCATTTTTCCCAATCACTACAAC-CAAAATAACTTAATCAACAAATATTTATTGACAGATTATGtccattgctgaaggcaaaagatagt--taaaatcatgcttgaattttctcacatctaattaatttaaaaccctgcc-aattctaccttcaaa
i canFam3.chr16            I 273 I 358
e calJac3.chr3             190332276   0 - 190850796 C

a score=59860.000000
s hg38.chr4_KI270925v1_alt     14526 26 +    555799 ctatatcttgcatcgaccaattttca
s panTro4.chr4             192711974 26 + 193495092 ctatatcttgcattgaccaattttca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197822532 26 + 198332218 ctatatcttgcatcaaccaattttca
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113594078 26 + 115148730 ttatatcttgcattgaccgattttca
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183420873 26 + 184069350 ctatgtcctgcattgaccaattttca
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188801054 26 + 189454096 ctatgtcctgcattgaccaattttca
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178228208 26 + 178775436 CTATGTCCTGAATTGACCAATTTTCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135169240 26 + 135778131 ctatgtcctgcattgaccaattttca
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87414462 26 - 129401213 atatatccatcatttcagtaattgca
i mm10.chr8                C 0 C 0
e canFam3.chr16             17745895 358 -  59632846 I
e calJac3.chr3             190332276  0 - 190850796 C

a score=2957227.000000
s hg38.chr4_KI270925v1_alt     14552  983 +    555799  
s panTro4.chr4             192712000 1029 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197822558 1020 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113594104 1014 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183420899  963 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188801080  963 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178228234  967 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135169266  967 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190332276  983 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87414488  856 - 129401213  
i mm10.chr8                C 0 I 2489
e canFam3.chr16             17745895  358 -  59632846 I

a score=367219.000000
s hg38.chr4_KI270925v1_alt     15535 132 +    555799 gttcaggggaggattctgagaacacctttcaaggggaggattaggacacaatttgcagccctcttcaatccactacaTGTTcttcc----ctatctgttttatttaggttcaaatgtgaccttttcagacaggcca
s panTro4.chr4             192713029 132 + 193495092 gttcaggggaggattctgaaaacacctttcaaggggaggattaggacacaatttgcagccctcttcaatccactaAATATTcttcc----ctatctgttttatttaggttcaaatgtgaccttttcagacaggcca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197823578 132 + 198332218 gttcaggggaggattctgaaaacacctttcaaggggaggattaggacacaatttgcagccctcttcaatccactaAATGTTCTTCC----CTATCTGTTttctttaggtccaaatgtgaccttttcacacagaacg
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113595118 131 + 115148730 gttcagggga-gcttctgaaaacacctttcaaggggaggattcggccacaatttgcaaccctcttcaatccactaAATGTTcttcc----ctatctgttttccttaggttcaaatgtgaccttttcagacaggcca
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183421862 136 + 184069350 gttcaggggaggactctgaaaacacctttcaaggggaggatgaggacacaatttgcatccctcttcaatccactaAATGTTCTTCCTTGACTGTCTGTTTtctttaggttcaaatgtgacctcttcagacaggcca
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188802043 136 + 189454096 gttcaggggaggactctgaaaacacctttcaaggggaggatgaggacacaatttgcatccctcttcaatccactaAATGTTCTTCCTTGACTGTCTGTTTtctttaggttcaaatgtgacctcttcagacaggcca
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178229201 132 + 178775436 GTTCAGGGGAGGAATCTGAAAACACCTTTCAAGGGGAGGATGAGGACACAATTTGCATCCCTCTTAAATCCACTAAATGTTCTTCC----CTGTCTGTTTTCTTTAGGTTCAAATGTGACCTCTTCAGACAGGCCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135170233 136 + 135778131 gttcaggggaggaatctgaaaacacctttcaaggggaggaTGAGGACACAATTTGCATCCCTCTTCAATCCACTAAATGTTCTTCCCTGACTGTCTGTTTtctttaggttcaaatgtgacctcttcagacaggcca
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190333259 130 - 190850796 gttca-gggagggttctgaaaacatctttcaagcggaggcttaggaaacaatttgcag-cctcttcaatccactacaGGCTCTGCT----CTGGCTTTTTTTTAAAGgttcaaatgtgacctcttcaaagaggcca
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87415344 2489 - 129401213 I
e canFam3.chr16             17745895 358 -  59632846 I

a score=1043155.000000
s hg38.chr4_KI270925v1_alt     15667 337 +    555799 gttgtggccacccttgccgtgtactcaagaaac-----tttttatctgcttgacctaatttttcttactgcaattgtgcattgtgtatatttatttgttca-tttttttgttttctcttttcctactgctagaagaatgtgtgttccctctttgtctgtctgttcatgattctctcaccagttcctaggataattcctgacaca-----aagaaggcattcactaactgtttcc---------tgaatgaaGAAGTGTTGGCTGTATAATACGGACtgtgccagccatggaggataaaaagattaatcagatcgtatttctgctctaaaacatctcatgacctaAAACTGAGAGGCT
s panTro4.chr4             192713161 337 + 193495092 gttgtggccacccttgccgtgtactcaagaaac-----tttttatctgcttgacctaatttttcttactgcaattgtgcattgtgtatatttatttgttca-tttttttgttttctcttttcctactgctagaggaatgtgtgttccctctttgtctgtctgttcacgattctctcaccagttcctaggataattcctgacaca-----aagaaggcattcactaactgtttcc---------tgaatgaaGAAGTGTCGGCTGTATAATACGGACTGTGCCAGCCATGGAGGATAAAAACATTAATCAGATCGTATTTCTGCTCTAAAACATCTCATGACCTAAAACTGAGAGGCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197823710 338 + 198332218 gttgtggccacccttgtcctatactcaagacac-----tttttatctgcttgacctaatttttcttactgcagttgtacattgtgtatatttatttgttcattttttttgttttctcttttcctactgctagaagaatgtgtgttccctctttgtctatctgttcacgattctctcaccagttcctaggataattcctgacaca-----aagagggcattcactaactgtttcc---------tgaatgaaGAAGTGTCGGCTGTATAATATGGACtgtgccagccatggaggataaaaagattaatcagatcatatttctgctctaaaacatctcatgacctaAAACTGAGAGgct
i ponAbe2.chr4             C 0 I 3694
s nomLeu3.chr7b            113595249 335 + 115148730 gttgtggccacccttgccctatactcaagacac-----tttttatctgcttgacctaatttttctta-tgcagttgtgcattgtgtatatttatttgttc--tttttttgttttctcttttccaactgctagaagaatgtgtgttccctgtttgtctgtctgttcacgattctctcaccagttcctaggatacttcctgacaca-----aagagggcattcactaattgtttcc---------tgaatgaaGAAGTGTCGGCTGTATAATATGGACtgtgccagccacagaggataaaaagattaatcagattgtatttctgctctaaaaaatctcatgacctaAAACTGAGAGGCT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183421998 337 + 184069350 gttgtggtcacccttgccctgtactcaaaacac-----tttttatctgcttgacctaatttttcttattgctattgtgcattgtgtatatttgtttgttca-ttttcttgtttcctctttttccactgctagaagaatgtgtgttccctctttgtctgtctgttcatgattctcccaccagttcctaggataattcctgacaca-----aagagggcattcactaactgtttcc---------tgagtgaaGACGTGTCAGCTCTATAACATGGACtgtgccagccatagaggatacaaagattaatcagatcatgtttctgctctaaaaaatctcatgacctaAAACTGAGAGCTG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188802179 337 + 189454096 gttgtggtcacccttgccctgtactcaaaacac-----tttttatctgcttgacctaatttttcttattgctattgtgcattgtgtatatttgtttgttca-ttttcttgtttcctctttttccactgctagaagaatgtgtgttccctctttgtctgtctgttcatgattctcccaccagttcctaggataattcctgacaca-----aagagggcattcactaactgtttcc---------tgagtgaaGACGTGTCGGCTCTATAACATGGACtgtgccagccatagaggatacaaagattaatcagatcatgtttctgctctaaaaaatctcatgacctaAAACTGAGAGCTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178229333 333 + 178775436 GTTGTGGTCACCCTTGCCCTGTACTCCAAACAC-----TTTTTATCTGCTTGACCTAatttttcttattgctattgtgcattgtgtatatttgtttgttca-ttttcttgtttcctctttttctactgcTAGAACAATGTGTGTtccctctttgtctgtctgtTCATGATTCTCCCATCAGTTCCTAGGATACTTCCTGACACA-----AAGAGGGCATTC----ACTGTTTCC---------TGAGTGAAGAAGTGTCAGCTCTATAATATGGACTGTGCCAGCCATAGAGGATAAAAAGATTAATCAGATCATGTTTCTGCTCTAAAAAATCTCATGACCTAAAACTGAGAGCTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135170369 335 + 135778131 gttgtggtcacccttgccctgtactccaaacac-----tttttatctgcttgacctaatttttcttattgctattgtgcattgtgtatatctgtttgttca-ttttcttgtttc--ctttttctactgctagaacaatgtgtgttccctctttgtctgtctgttcatgattctcccatcagttcctacgataattcctgacaca-----aagagggcattcactaactgtttcc---------tgagtgaaGAAGTGTCAGCTCTATAATATGGACtgtgccagccatagaggataaaaagattaatcagatcgtgtttctgctctaaaaaatctcatgacctaAAACTGAGAGCCT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190333389 331 - 190850796 gttatggccacccttgtcctgtaccccaaacac-----tttttatctgcttaacctaatttttcttattgcaattgtgcattgtttatattcaattgttca-ttttct--ttttcttttttcccactgctagaagaatgtgtgttccctccttgtctgtctgttcactgttctctcaccagttcctaggatgattcctgataca-----aagagggcattc----gctatttcc---------tgaatgaaGAAGTGTCATCTGTATAATACAGACTGTGCCAGCCATGGAGGATGAAAAGATTAATTCAATAGTATTTCTGCTCTAAAAAATTTCATGACCTAAAACTGAGAGCCT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87417833 346 - 129401213 GTTATGGTCATGCATTCACTATATATAAAATGCTTTCTTTTTTATTAGTTCTACCTTACTTTTCTTGCCACAGTTCTACATTTTATATATGTGTTAGTTCA-CATGCTTACTTTCTCATTCCCCATCACAAGAATTCTGCTCATCCAC------ACTACTTGTTCCCTATTTTCTCACCATTCTTTGGAGTAAATCTTGACACACACACAAACAGGCATTAATCAGTTATTTCCCTGACTGAATAAATGAATATATAATGGCTATATCAAAAGTAGGATGCTAGCCACTTAAGAAAAATACACTCAACATATATTGTTTCTGCCCTGCAAAA----ACAGCCTGAAATTGAAAGTGT
i mm10.chr8                I 2489 C 0
e canFam3.chr16             17745895 358 -  59632846 I

a score=268768.000000
s hg38.chr4_KI270925v1_alt     16004 114 +    555799 GCTGATCTGGAATTGATGCTATGGCTTCTCAACTTCAACAGTTTGGAAGAGAATCACAAAATTGTGTCATTTATAAGCAAAGTTCAAAGTACTAAAAA--AAAATAGGAACACTAC
s panTro4.chr4             192713498 114 + 193495092 GCTGATCTGGAATTGAAGCTATGGCTTCTCAACTTCAACAGTTTGGAAGAGAATCACAAAATTGTGTCATTTATAAGCAAAGTTCAAAGTGCTAAAAA--AAAATAGGAACACTAC
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113595584 114 + 115148730 GCTGATCTGGAATTGATGCTGTGGCTTCTCAACTCCAATAGTTTGGAAGAGAATCACAAAATTGTGTCATTTATAAGCAAAGTTCAAAGTGCTAAAAT--AACACAGGAACACTAC
i nomLeu3.chr7b            C 0 M 100
s rheMac3.chr5             183422335 113 + 184069350 GCTGATCTGGAATTGATGCTGTGGCTTCTCAACTCCAAAACTTTGGAAGAGAATCACAAAATTGTGTCATTTATAGGCAAAGTTCAAAGTGCT-AAAA--CAAATAGGAACACTAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188802516 113 + 189454096 GCTGATCTGGAATTGATGCTGTGGCTTCTCAACTCCAAAACTTTGGAAGAGAATCACAAAATTGTGTCATTTATAGGCAAAGTTCAAAGTGCT-AAAA--CAAATAGGAACACTAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178229666 114 + 178775436 GCTGATCTGGAATTGATGCTGTGGCTTCTCAACTCCAAAAGTTTGGAAAAGAATCACAAAATTGTGTCATTTATAGGAAAAGGTCAAAGTGCTAAAAA--CAAATAGGAATACTAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135170704 114 + 135778131 GCTGATCTGGAATTGATGCTGTGGCTTCTCAACTCCAAAAGTTTGGAAGAGAATCACAAAGTTGTGTCATTTATAGGCAAAGGTCAAAGTGCTAAAAA--CAAATAGGAATACTAC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190333720 113 - 190850796 GATAATCTGGAATTGATGCTGTGACTTCTCAACTCTGATAGTTTGGAAGAGTATCACAAAATTGTGTAATTTACAAGCAAAGTTCACAGCGCTAAAAA--AAAATAGACA-ACTAA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87418179 107 - 129401213 GTTATTCTAGAATTAATGATATTG-------ATTACAATAATAAGAAAGAGAATTTTAAAACTGTA--ATTTATAAGCAAGGTTTAAAGTTCTCAAAGGTGAATCTTGAACACTAA
i mm10.chr8                C 0 C 0
e canFam3.chr16             17745895 358 -  59632846 I
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=70535.000000
s hg38.chr4_KI270925v1_alt     16118 34 +    555799 ATATTTCAATGCATGAGTACACATAGGGCTCCCC
s panTro4.chr4             192713612 34 + 193495092 ATATTTCAATGCATGAGTACACATAGGGCTCCCC
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183422448 34 + 184069350 ATATTTAAATGCATGAGAACACATAGGGCTCCCC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188802629 34 + 189454096 ATATTTAAATGCATGAGAACACATAGGGCTCCCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178229780 34 + 178775436 ACATTTAAATGCATGAGAACACATAGGGCTCCCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135170818 34 + 135778131 ACATTTAAATGCATGAGAATACATAGGGCTTCCC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190333833 34 - 190850796 ATATTTAAATGCATGAGAACACATAGGTCTCCCC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87418286 34 - 129401213 ACATTTAAATGAGTGAGAAcacttggtgtcccac
i mm10.chr8                C 0 C 0
e canFam3.chr16             17745895 358 -  59632846 I
e nomLeu3.chr7b            113595698 100 + 115148730 M
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=464059.000000
s hg38.chr4_KI270925v1_alt     16152 200 +    555799 TCCTCTGCCAATGGCAG-GGACTACC------AGAGCTT----------------CTAAAGGCATTTTAAAGTTACACTGTGAGGAGTGTCAGACTGATTAACATTTTCAGCCAACGCTGTTGAAGGTGGGATTTATCAGATTTTTTTTCATTTATATTTAAATTCTTAAATTAAGGAATAAGAAACATATTAATAAAAGCCTTAGTGATATCTTCATAGTAT
s panTro4.chr4             192713646 199 + 193495092 TCCTCTGCCAATGGCAG-GGACTACC------AGAGCTT----------------CTAAAGGCATTTTAAAGTTACACTGTGAAGAGTGTCAGACTGATTAACATTTTCAGCCAACGCTGTTGAAGGTGGGATTTATCAGA-TTTTTTTCATTTATATTTAAATTCTTAAATTAAGGAATAAGAAACATATTAATAAAAGCCTTAGTGATATCTTCATAGTAT
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113595798 198 + 115148730 TCCTCTGCC-ATGGCAG-GGACTACC------AGAGCTT----------------CTAAAGGCATTTTAAAGTTCCACTGTGAGGAGTGTCAGACTGATTACCATTTTCAGCCAATGCCGTTGAAGGTGGCATTTACCAGG-TTTTTTTCATTTATATTTAAATTCTTAAATTAAGGAATAAGAATCATATTAATAAAGGCCTTAGTGATATCTTCATAGTAT
i nomLeu3.chr7b            M 100 C 0
s rheMac3.chr5             183422482 198 + 184069350 ACTTCTGCCAATAGCAG-GGACTACC------AGAGCTT----------------CTAAAGGCATTTTGAAGTT-CACTGTGAGGAGTGTCAGACTGATTACCATTTTCACGCAACACTGTTGAAGGTGGCATTTACCAGG-tttttttcatttatatttaaattcttaaattaagaaataagaaatatattaataaatGCCTTAGTGATATCTTCATGGTAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188802663 198 + 189454096 ACTTCTGCCAATAGCAG-GGACTACC------AGAGCTT----------------CTAAAGGCATTTTGAAGTT-CACTGTGAGGAGTGTCAGACTGATTACCATTTTCACGCAACACTGTTGAAGGTGGCATTTACCAGG-TTTTTTTCATTTATATTTAAATTCTTAAATTAAGAAATAAGAAATATATTAATAAACGCCTTAGTGATATCTTCATGGTAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178229814 197 + 178775436 ACTTCCGCCAATAGCAG-GGACTACC------AGAGCTT----------------CTAAAGGCATTTTGAAGTT-CACTGTGAGGAGTGTCAGACTGATTACCATTTTCAGCCAATGCTGTTGAAAGTGGCATTTACCagg--ttttttcatttatattttaattcttaaattaagaaataagaaatatattaataaacacCTTAGTGATATCTTCATGGTAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135170852 198 + 135778131 ACTTCTGCCAATAGCAG-GGACTACC------AGAGCTT----------------CTAAAGGCATTTTGAAGTT-CACTGTGAGGAGTGTCAGACTGATTACCATTTTCAGCCAACACTGTTGAAAGTGGCATTTACCAGG-TTTTTTTCATTTATATTTTAATTCTTAAATTAAGGAATAAGAAATATATTAATAAACACCTTAGTGATATCTTCATGGTAT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190333867 205 - 190850796 TCGTCTGCCAATGGTAG-GGACTACCAGGAAGAGAACTC----------------CTAAAGGCATTTTAAAGTTCCACTGTGAGGAGCGTCAGACTGATTACCATTTTCACACAAGGCTGTTGAAGGTGGCATTTACCAGG-TATTTTTCATTAATATTTAAATTCTTAGATTAAGGAATAAGAAACATATTAATGAAAGTCTCAGTGATATTTTCAAAGAAT
i calJac3.chr3             C 0 I 314
s mm10.chr8                 87418320 203 - 129401213 --tcccagcaatggtagttgattcca------ggagcccaatgctggaaacccagctcaagctattttcaagatcagctctaaacaatgcca-actgattagtgttttctgccaggagtgttaaaca-gaggTCTACGAGG-TACTTTACATTTGTATTGGAATTCTTGAATTAAAGAATGGCAACCTTATTGATGAAA---------ATATCTTATTTGTGT
i mm10.chr8                C 0 C 0
e canFam3.chr16             17745895 358 -  59632846 I
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=5576.000000
s hg38.chr4_KI270925v1_alt     16352 2 +    555799 AA
s panTro4.chr4             192713845 2 + 193495092 AA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113595996 2 + 115148730 AA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183422680 2 + 184069350 AA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188802861 2 + 189454096 AA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178230011 2 + 178775436 AA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135171050 2 + 135778131 AA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190334386 2 - 190850796 aa
i calJac3.chr3             I 314 C 0
s mm10.chr8                 87418523 2 - 129401213 GA
i mm10.chr8                C 0 I 657
e canFam3.chr16             17745895 358 -  59632846 I
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=371576.000000
s hg38.chr4_KI270925v1_alt     16354 167 +    555799 AGTATGACTTACTTTATTAATCTATTAGCATATCTTATCATATTCTGTGATATTTATAACCTG-AAAAATGTCAAGGAGAGAGATGATACCAGGACTGAGAAAACATGTTAAACCATACTTGATATTTTCATTAATATTTGAGACAATATTATTTACTAAATATTGAA
s panTro4.chr4             192713847 167 + 193495092 AGTATGACTTACTTTATTAATCTATTAGCATATCTTATCATATTCTGTGATATTTATAACCTG-AAAAATGTCAAGGAGAGAGATGATACCAGGACTGAGAAAACATGTTAAACCATACTTGATATTTTCATTAATATTTGAGACAATATTATTTACTAAATATTGAA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113595998 167 + 115148730 AGTATGACTTACTTTATTAATCTATTAGCATATCTTATCATATTCTGTGATATTTATATCCTG-AAAAATGTCAAGGAGAGAGATGATGCCAGGACTGAGAAAACATGTTAAATCATACTTGATATTTTCATTAATATTTGAGACAATTTTATTTACTAAATAGTGAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183422682 166 + 184069350 AGTATGA-TTACTTTATTAATCTACTAGCATATCTTATCATTTTCTGTGATATTTATATCCTG-ATAAATGTCAGGGAGAGGGATGATATCAGGACTGAGAAAACAAGTTAAACCATACTTGATATTTTCATTAATATTTAAGACAATTTTATTTACTAAATAGTGAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188802863 166 + 189454096 AGTATGA-TTACTTTATTAATCTACTAGCATATCTTATCATTTTCTGTGATATTTATATCCTG-ATAAATGTCAGGGAGAGGGATGATATCAGGACTGAGAAAACAAGTTAAACCATACTTGATATTTTCATTAATATTTAAGACAATTTTATTTACTAAATAGTGAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178230013 167 + 178775436 AGTATGACTTACTTTATTAATCTACTAGCATGTCTTACCATTTTCTGTGATATTTATATCCTG-CTAAATGTCAGGGAGAGAGATGATATCAGGACTGAGAAAACATGTTAAACCATACTtgatattttcattaatatttaagacaattttatttactaaatagtGAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135171052 164 + 135778131 AGTATGACTTACTTTATTAATCTACTAGCATGTCTT---ATTTTCTGTGATATTTATATCCTG-CTAAATGTCAGGGAGAGAGATGATATCAGGACTGAGAAAACATGTTACACCATACGTGATATTTTCATTAATATTTAAGACAATTTTATTTACTAAATAGTGAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190334388 168 - 190850796 aGCATGACTTACTTTATTAATCTACTTTCATATCTTGTCATTTTCTGTGATATTTACATCCTGAAAAAATGTCCAGGAGAGAGATGGTATCAGGACTGAGAAAGCATGTTAAACCATACTTGATATTTTCATTGATGTTTGAGATGATTTTATTTACTGAATAGTTAA
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87418525 657 - 129401213 I
e canFam3.chr16             17745895 358 -  59632846 I
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=258841.000000
s hg38.chr4_KI270925v1_alt     16521 100 +    555799 GCTCACAGAGAAATACAAAATAATAGCAATTAACAGTAAAATTTACTAAAATCTAGATATCCTATTATTCATTTCTAGTTTTAGCAATGCTTTGATTTTA
s panTro4.chr4             192714014 100 + 193495092 GCTCACAGAGAAATACAAAATAATAGCAATTAACAGTAAAATTTACTAAAATCTAGATATCCTATTATTCATTTCTAGTTTTAGCAATGCTTTGATTTTA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113596165 100 + 115148730 GCTCACAGAGAAATACAAAATAATAGCAATAAACAGTAAAATTTACTAAAATCTAGATATCCTATTATTCATTTCTAGTTTTAGCAATGCCTTGATTTTA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183422848 100 + 184069350 GCTCACAGAGAAATACAAAATAATAGCAATAAACAGTAAAATTTCCTAAAATCTAGATATCCTATTATTAATTTCCAGTTTTGGCAATTCCTTGATTTTA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188803029 100 + 189454096 GCTCACAGAGAAATACAAAATAATAGCAATAAACAGTAAAATTTCCTAAAATCTAGATATCCTATTATTAATTTCCAGTTTTGGCAATTCCTTGATTTTA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178230180 100 + 178775436 GCtcacagagaaatacaaaataatagcaataaacaGTAAAATTTCCTAAAATCTAGATATCCTATTATTCATTTCCAGTTTTAGcaatttcttgatttta
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135171216 100 + 135778131 GCTCACAGAGAAATACAAAATAATAGCAATAAACAGTAAAATTTCCTAAAATCTAGATATCCTATTTTTCATTTCCAGTTTTAGCAATTTCTTGATTTTA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190334556  99 - 190850796 GCTCAAAGAGCAATACAAAATAATAGCAATAAATAGT-AAATTTACTAAAATCTAGATATCCTCTTATTCATTGCTAGTCTTAGCAATTCCTTGACTTGA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17746253  93 -  59632846 GCTCACAGAGCAATCCACAACAACAGCAGTAATTATCAAAATTCACTAAAATCTAGGTATCCTCTCAATAAACTC-------AGGAATTTCTTGACATTC
i canFam3.chr16            I 358 C 0
e mm10.chr8                 87418525 657 - 129401213 I
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=619644.000000
s hg38.chr4_KI270925v1_alt     16621 278 +    555799 AAGAATAAGAggctgggtgtggtgacttacgtctgtaatcttagcacttcggggggc---------tggatcacctgaggtcaggagtttgagaccagcctggccaacacggtgaaaccctgtctctactaaaaatgc-aagaattagccaggcatggtggtacatgcctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgagcctgtgaggcagaggttgtagtgaaccaagatcatgccactgcactccagcctggccaacagagcaagactcc
s panTro4.chr4             192714114 277 + 193495092 AAGAATAAGAggctgggtgtggtggctcacgtctgtaatcttagcactttgggaggc---------tggatcacctgaggtcaggagtttgagaccagcctggccaacacggtgaaaccctgtctctactaaaaatac-aagaattagccaggcatggtggta-atgcctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgagcctgtgaggcagaggttgtagtgaaccaagatcgtgccactgcactccagcctggccgacagagcaagactcc
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113596265 287 + 115148730 AAGAATAAGAggctgggcgtggtggctcacgtctgtaatcttagcactttgggaggctgaggtgggtggatcacctgaggtcaggagtttgagaccagcctggccaacacagtgaaaccctgtttctactaaaaatac-aaaaattagccaggtgtggtggtacacgcctgtaatcccagctacctgggaggctgaagcaggagaatcacttgagcctgggaagtggaggttgtagtgagccaaggtcatgccactgcactccagcctggccaacagagcaagactcc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183422948 287 + 184069350 AAGAATAAGAggctggttgtggtggctcatgcttataatcttagcactttgggaggccgaggcaggtggatcacctgaggtcaggagttcaagatcagcctggccaacatggtgaaaccctgtatctactaaaaatac-aaaaattagccaggtgtggtggtacacacctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgagcccgggaggtggaggttgcagtgaaccaagatcgtgccgctgcactccagcctggccaacagagcaagaatcc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188803129 287 + 189454096 AAGAATAAGAggctggttgtggtggctcatgcttataatcttagcactttgggaggccgaggcaggtggatcacctgaggtcaggagttcaagaccagcctggccaacattgtgaaaccctgtatctactaaaaatac-aaaaattagccaggtgtggtggtacacacctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgagcccgggaggtggaggttgcagtgaaccaagatcgtgccgctgcactccagcctggccaacagagcaagactcc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178230280 287 + 178775436 aagaataagaggctgggtgtggtggctcatgcttataatcttagcactttgggaggccgaggcaggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgtatctactaaaaatac-aaaaattagccaggtgtggtggtgcacacctgtaatcccagctacttgggaggctgaggcaggagaattgcttgagcctaggaggcggaggttgcagtgaaccgagatcgtgccactgcactccagcctggccaacagagcaagactcc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135171316 287 + 135778131 AAGAATAAGAggctgggtatggtgactcatgcttataatcttagcactttgggaggccgaggcaggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgtatctactaaaaatac-aacaattagctgggtgcggtggtgcacacctgtaatcccagctacttgggaggctgaggcaggagaattgcttgagcctgggaggcggaggttgcagtgaaccgagatcgtgccactgcactccagcctggccaacacagcaagactcc
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190334655 287 - 190850796 AAGAGTAAGAGGCCAGGTGCTAAGA-ttacgcctgtagtcttagcaatttgggaggccaaggcgggtggattacctgtggtcagaagttcaagactagctagtccaacacggtgaaacactgtctctagtaataacacaaaaaattagccaagcttggtggtacatgcctgtaatcccagctacatgggaggctgaggcaggagaattgctcaaacctggggggtgaaggctgcagtaaggtgagatcatgccattgcaacccagccttgctgacagagtgagactct
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87418525 657 - 129401213 I
e canFam3.chr16             17746346   0 -  59632846 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=24504.000000
s hg38.chr4_KI270925v1_alt     16899 22 +    555799 atctcac------aa-----aaaa-------aaaaaGAGT
s panTro4.chr4             192714391 23 + 193495092 atctcac-----aaa-----aaaa-------aaaaaGAGT
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113596552 28 + 115148730 atctcaaaaaaaaaa-----aaaa-------aagaaGAGT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183423235 23 + 184069350 atctcaa-----aaa-----aaaa-------aagaagaat
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188803416 23 + 189454096 atctcaa-----aaa-----aaaa-------aagaagaat
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178230567 30 + 178775436 atctcaa-----aaa-----aaaaaaaaaagaagaagaat
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135171603 27 + 135778131 atctcaa-----aaa-----aaaaaaaa---aagaagaat
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190334942 19 - 190850796 gtctcaa-----aaa-----gata-------aaaga----
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87419182 24 - 129401213 ATTTCAC-----TAACTCCTAGAC-------AACAA----
i mm10.chr8                I 657 C 0
e canFam3.chr16             17746346  0 -  59632846 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=139563.000000
s hg38.chr4_KI270925v1_alt     16921 48 +    555799 AA--GAATAAGAGACACATGTTCACACTGTATATGTATTTTGGGACAGCT
s panTro4.chr4             192714414 48 + 193495092 AA--GAATAAGAGACACATGTTCACACTGTATATGTATTTTGGGACAGCT
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113596580 48 + 115148730 AA--GAATAAGAGACACATGTTCACACTGTACATGTATTTTGGGAAAGCT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183423258 50 + 184069350 aaaCGAATAAGAGACACATGTTCACACTGTATATATATTTTTGGAAAGCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188803439 50 + 189454096 aaaCGAATAAGAGACACATGTTCACACTGTATATATATTTTGGGAAAGCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178230597 50 + 178775436 aaaagaataagagACACATGTTCACACTGTATATGTATTTTGGGAAAGCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135171630 50 + 135778131 aaaagaaTAAGAGACACATGTTCACACTGTATATGTATTTTGGGAAAGCT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190334961 46 - 190850796 ----gaaTAAGAGACACATGTTCACACTGTATATGTATTTTGGGAAAGCT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87419206 40 - 129401213 ----GAGTAAGAGACATATGCTCATTCTGAGTGTGTAT------AAAGTT
i mm10.chr8                C 0 C 0
s canFam3.chr16             17746346 43 -  59632846 --AGAAGTAAGATATACATGTTCA-----TGTATATGTTTTGGAAGAGTT
i canFam3.chr16            C 0 C 0
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=731819.000000
s hg38.chr4_KI270925v1_alt     16969 454 +    555799  
s panTro4.chr4             192714462 454 + 193495092  
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113596628 443 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183423308 430 + 184069350  
i rheMac3.chr5             C 0 I 19
s macFas5.chr5             188803489 430 + 189454096  
i macFas5.chr5             C 0 I 1
s papAnu2.chr5             178230647 428 + 178775436  
i papAnu2.chr5             C 0 I 1
s chlSab2.chr7             135171680 429 + 135778131  
i chlSab2.chr7             C 0 I 1
s mm10.chr8                 87419246 342 - 129401213  
i mm10.chr8                C 0 C 0
s canFam3.chr16             17746389 531 -  59632846  
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190335007   0 - 190850796 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=-1482.000000
s hg38.chr4_KI270925v1_alt     17423 26 +    555799 --CCCAATCTAGGTGACTTCTATATATA
s panTro4.chr4             192714916 26 + 193495092 --CCCAATCTAGGTGACTGCTATATATA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113597071 18 + 115148730 --CCCAATCTAGGTGACT--------TA
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188803920 18 + 189454096 --CTGGATCGATGTGATTTC--------
i macFas5.chr5             I 1 C 0
s papAnu2.chr5             178231076 18 + 178775436 --CTGGATCGAGGTGATTTC--------
i papAnu2.chr5             I 1 C 0
s chlSab2.chr7             135172110 18 + 135778131 --CTGGATCGAGGTGGCTTC--------
i chlSab2.chr7             I 1 C 0
s mm10.chr8                 87419588 17 - 129401213 -----------agtgacttgggaaccta
i mm10.chr8                C 0 C 0
s canFam3.chr16             17746920 27 -  59632846 caggcaccccAAGTTGCTTCTTTCTTA-
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190335007  0 - 190850796 C
e rheMac3.chr5             183423738 19 + 184069350 I
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=508967.000000
s hg38.chr4_KI270925v1_alt     17449 253 +    555799 TATAGC---------GTTGG----------------------------TTCATGCGCTGTTATTGAG----------TGTG----TTG------------------CACCTGCACACTGGAACTCAGATCACCACCACACTCCCACATTCTTGACCCTGGACAGGGAGAAAGGCTGTGTGCAGGGCAAACCGCTTA-TTTTCATATATGT-ATCTGGAATTTACACACATTATTTTCACTTGTGTGTCTGTCACCAATGTTTACATGCACAGCTCCAGatgtggtctctattagggtggccaagagccctacaacagttcagag
s panTro4.chr4             192714942 253 + 193495092 TATAGC---------GTTGG----------------------------TTCATGCGCTGTTATTGAG----------TGTG----TTG------------------CACCTGCACACTGGAACTCAGATCACCACCACACTCCCACATTCTTGACCCTGGACAGGGAGAAAGGCTGTGTGCAGGGCAAACCGCTTA-TTTTCATATATGT-ATCTGGAATTTACACACATTATTTTCACTTGTGTGTTTGTCACCAATGTTTACATGCACAGCTCCAGatgtggtctctattagggtggccaagagccctacaacagttcagag
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113597089 258 + 115148730 TATAGC---------GTTGG----------------------------TTCATGCGCTGTTATTGAG----------TGTGTTGTTTG------------------CACCTACACACTGGAGGTCAGATCACCACCACACTCCCACATTCTTGACCCTGGACAGGGAGAAAGGCTGTGCGCAAGGCAAACCACGTA-TTTTCATATATGTAATCTGGAATTGACACACATTACTTTCACTTGTGTGTCTGTCACCAATATTTACACGCACACCTCCAGatgtggtctctattagggtggccaagagccctacaacagttcagag
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183423757 258 + 184069350 TGCAGT---------ATTGG----------------------------TTCCTGCGCTGTTATTGAG----------TACCTTGTTTG------------------CACCTGCACACTGGAAGTCAGATCACCACCACATTCCCACATTCTTTATCCTGGACAGGGAGAATGTCTGTGTGCAGGGCAAACCGCTTA-TTTTCATATATGTAATCTGGAATTTACACACATCGCTTTCGGTTGCGTGTCTGTCAGCAATGTTTACACGCACAGCTCCAGATGCGGTCTCTAGCTGGGTGGCCAAGAGCCCCACAACAATTCAGGG
i rheMac3.chr5             I 19 C 0
s macFas5.chr5             188803938 258 + 189454096 TGCAGT---------ATTGG----------------------------TTCCTGCGCTGTTATTGAG----------TACCTTGTTTG------------------CACCTGCACACTGGAAGTCAGATCACCACCACATTCCCACATTCTTTATCCTGGACAGGGAGAATGTCTGTGTGCAGGGCAAACCGCTTA-TTTTCATATATGTAATCTGGAATTTACACACATCGCTTTCGGTTGCGTGTCTGTCAGCGATGTTTACACGCACAGCTCCAGATGCGGTCTCTAGCTGGGTGGCCAAGAGCCCCACAACAATTCAGGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178231094 258 + 178775436 TGCAGT---------ATTGG----------------------------TTCCTGCGCTGTTATTGAG----------TACCTTGTTTG------------------CATCTGCACACTGGAAGTCAGACCACCACCACACTCCCACATTCTTTATCCTGGACAGGGAGAATGTCTGTGTGCAGGGCAAACCGctta-ttttcatatatgtaaTCTGGAATTTACACACATTGCTTTCGGTTGCGTGTCTGTCAGCAATGTTTACACGCACAGCTCCAGATGCGGTCTCTAGCTGGGTGGCCAAGAGCCCCACAACAATTCAGGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135172128 258 + 135778131 TGTAGC---------ATTGG----------------------------TTCCTGCGCTGTTATTGAG----------TACCTTGTTTG------------------CACCTGCACACTGGAAGTCAGATCACCACCACATTCCCACATTCTTTATCCTCGACAGCGAGAAAGTCTGTGTGCAGGGCAAACTGCTTA-TTTTCATATATGTAATCTGGAATTTACACACATCGCTTTCGGTTGCGTGTCTGTCAGCAATGTTTACACGCACAGCTCCagatgcggtctctagctgggtggccaagagccccacaacaattcaggg
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87419605 225 - 129401213 -----t---------gttgt----------------------------tttgctcactgttcttgtg----------cacattgccct------------------cgtgtgcacac------ctaaataaccatcacagctccacatcctagcccatggaagagcagaaagTACTTACAAAAGACAAGCAGTTTACTTTCCATGTATTTGACCTAGAATTA---------GCTTCCACTAGAAAGTCTGCCACC--------------CAAATTAAAATGTAATCTTCATTTGAGTGGTCATGAGACTCATTAACACTCAAAG
i mm10.chr8                C 0 I 899
s canFam3.chr16             17746947 314 -  59632846 TGTAACAGTCTGAAAGTTGGCAGATAGTCCAACCCCATCAGATGTACTTTTCTATGATGTCATTGAGGCTATATCACTGCTTTGCTAGTCTTGAGTGGATGCCCCTCACCTGCACATTCAAACTTGGGTCACCATCATACTTCTTCATTCTTGTCCCTGCAAGGGGAGAAAGGATGTGTGGAGGGTAAGC-----A-TTTTCACATACCT-CTTTGGAATTTGCGCCTGTCACTTGCACTAACACAACTGCCACCAATGTTTACACATACAGCTCAAAATGTACTCTCTGGCTGAGTAACCATGAGCCCCACAGGA---TAGAG
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190335007   0 - 190850796 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=466985.000000
s hg38.chr4_KI270925v1_alt     17702 268 +    555799 ggttataatcctaaagggaagaaggggagaatgaaGACACAGAATAATTAGATGTCTGCAGCTTGGTATAGTTGACTAATTCTCCCATCCCCCAAACTAACTGATTATCTTTACTTAATCTG-----GACAGTAGTATTCTTAGTACTT---GAACTTAATAATAGTTCCTTTGTTCTTTCAGAACAGAAAAATAAATTGAAAGGAGATTACACTAGAAAAA-AATAA-TTTTCCCCCTCTCAAAATGTGGACAACAACACGCCAGTCACACACACCT
s panTro4.chr4             192715195 271 + 193495092 ggttataatcctaaagggaagaaggggagaatgaaGACACAGAATAATTAGATGTCTGCAGCTTGGTATAGTTGACTAATTCTCCCATCCCCCAAACTAACTGATTATCTTTACTTAATCTG-----GACAGTAGTATTCTTAGTAGTTGAAGAACTTAATAATAGTTCCTTTGTTCTTTCAGAACAGAAAAATAAATTGAAAGGAGATTACACTAGAAAAA-AATAA-TTTTCCCCCTCTCAAAATGTGGACAACAACATGCCAGTcacacacacct
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113597347 272 + 115148730 ggttataatcctgaaaggaagaaggggagaatgaaGACACAGAATAATTAACTGCCT-CAGCTTGGTATAGTTGACTAATTCTCCCATCCCCCAAACTAACTGATTATCTTTACTTAATCTGGATAAGACAGTAGTATTCTTACTACTTAAAGAACTTAATAATAGTTCCTTTGTTCTTTCAGAACAGAAAAATAAATTGAAAGGTGATTACACTAGAAAAA-AATAA-TTTTCCCCCTCTCAAAATGTGG---ACAacacgcaagtcacacacagct
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183424015 268 + 184069350 GGCTATAATCCTAAAAGGAAGGAGGGGAGAAGGAAGACGCAGAGCACTTAGCGGTCCGCAGCTTGGTGTAG----CTAATTCTCCCATCCCCCAAACTAACTGATTGTCTTTACTTAATCTGGACGAGATAGTAGTATTTTTAGTACTTGAAGAATTTAATAATAGTACCTTTGTTCTCTCAGAACAGAAAAATAAATTGAAAGGAGATCCCAGTAGAAA---AATACCTTTTCCCCCTCTCCAAATGTAG---ACAACACGCAAAAGTCACAGACCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188804196 268 + 189454096 AGCTATAATCCTAAAAGGAAGGAGGGGAGAAGGAAGACGCAGAACACTTAGCGGTCCGCAGCTTGGTGTAG----CTAATTCTCCCATCCCCCAAACTAACTGATTGTCTTTACTTAATCTGGACGAGAGAGTAGTATTTTTAGTAAATGAAGAATTTAATAATAGTACCTTTGTTCTCTCAGAACAGAAAAATAAATTGAAAGGAGATCACAGTAGAAA---AATACCTTTTCCCCCTCTCCAAATGTAG---ACAACACGCAAAAGTCACAGACCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178231352 268 + 178775436 GGCTATAATCCtaaaaggaaggaggggagaatgAAGACGCAGAACACTTAGCGGTCCGCAGCTTGGTGTAG----CTAATTCTCCCATCCCCCAAACTAACTGATTATCTTTACTTAATCTGGACGAGAGAGTAGTATTTTTAGTACTTGAAGAATTTAATAATAGTGCCTTTGTTCTctcagaacagaaaaataaattgaaaggaGATCacagtagaaa---aataacttttcccCCTCTCCAAATGTAG---ACAACACGCAAAAGTcacagacct
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135172386 271 + 135778131 ggttataatcctaaacggaaggaggggagaatgaagacacagaacacttagcagtcCGCAGCTTGGTGTAG----CTAATTCTCCCATCCCCCAAACTAACTGATTATCTTTACTTAATCTAGACGAGAGAGTAGTATTTTTAGTACTTGAAGAATTTAATAATAGTGCCTTTGTTCTCTCAGAACAGAAAAATAAATTGAAAGGAGATCACACTAGAAAAAGAATACCTTTTCCCCCTCTCCAAATGTAG---ACAACACGCAAAAGTCACAGACCT
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17747261 256 -  59632846 ----ATGATATAAAATGGA-------GGGAATGAAGA--CAGAATAAATGGCAGTCC-----TTGGCATGGTTGTCTAGTTCTCCCTACTTCCAAATCAACAATTTAGCTCTTCTTAATCTAGATAAGA---TGGGGTTCTTCAGATGTGAAGAATTTAATAATGGTCAAATTGTCGTTTTGGAACAGAAAAATCAATAGGAGTGAAATTACATTGGAAAAC-AGTACTATTTTTCCCTTTCATAATTTGCAAGGTAACACGCAAGTCACATATACTC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87419830 899 - 129401213 I
e calJac3.chr3             190335007   0 - 190850796 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=10812.000000
s hg38.chr4_KI270925v1_alt     17970 6 +    555799 GCAAGC
s panTro4.chr4             192715466 6 + 193495092 gcaagc
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113597619 6 + 115148730 gcaagc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183424283 6 + 184069350 GCAGGC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188804464 6 + 189454096 GCAGGC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178231620 6 + 178775436 gcaggc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135172657 6 + 135778131 GCAGGC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87419830 899 - 129401213 I
e canFam3.chr16             17747517 0 -  59632846 C
e calJac3.chr3             190335007 0 - 190850796 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=273.000000
s hg38.chr4_KI270925v1_alt     17976 1 +    555799 A
s panTro4.chr4             192715472 1 + 193495092 a
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113597625 1 + 115148730 a
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87419830 899 - 129401213 I
e canFam3.chr16             17747517 0 -  59632846 C
e calJac3.chr3             190335007 0 - 190850796 C
e chlSab2.chr7             135172663 0 + 135778131 C
e papAnu2.chr5             178231626 0 + 178775436 C
e macFas5.chr5             188804470 0 + 189454096 C
e rheMac3.chr5             183424289 0 + 184069350 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=4675.000000
s hg38.chr4_KI270925v1_alt     17977 7 +    555799 CACGCAC
s panTro4.chr4             192715473 7 + 193495092 cacgcac
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113597626 7 + 115148730 cacgcac
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183424289 7 + 184069350 CACACAG
i rheMac3.chr5             C 0 C 0
s chlSab2.chr7             135172663 7 + 135778131 CACACAG
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87419830 899 - 129401213 I
e canFam3.chr16             17747517 0 -  59632846 C
e calJac3.chr3             190335007 0 - 190850796 C
e papAnu2.chr5             178231626 0 + 178775436 C
e macFas5.chr5             188804470 0 + 189454096 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=63508.000000
s hg38.chr4_KI270925v1_alt     17984 179 +    555799 CTGCAAACACACGCACCAGCTAGCACATGCACCTGCAAACACACGCACC------AGCAAACACACACACCTGCAAGCACACACACACCTGCAAGCACACACACCCGTAAGCACACGCACCAGCAAGCACACACACCTGCAAGCACACGCACCTGCAAGCACACGCA--CCAGCAAGCACACGCACC
s panTro4.chr4             192715480 161 + 193495092 ctgcaaacacacgcaccagctagcacacgcacctgcaaacacacgcacc------agcaaacacacacacctgcaag--cacacgcacctgcaagcacacacacctgtaagcacacg----------------cacctgcaagcacacgcacgtgcaagcacacaca--ccagcaagcacacacacc
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183424296 182 + 184069350 TTGTAAGcacacacacttgcaagcacacgcacctgcaaacacatgcacacacagttgcaggcacacacagctgcagg--cacacacacctgcagtcacacacacctgcaagcacacacacctgcaggcacacacactggcaggcacacacacctgcaggcacacaca---gcgcaagcacacacaGC
i rheMac3.chr5             C 0 I 48
s chlSab2.chr7             135172670 177 + 135778131 TTGTAAGCACACACACTTGCAAGCACACCCACCTGCAAACACATGCACA------TGCAAGCACACACACCTGCAAG----CACACACCTGCAGGCACACACAGCTGCAAGCACACACACCTGCAGGCACATGCAGCTGCAGGCACACACAGCTATACAAACACACACGCCCGCAAGCACACACAGC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87419830 899 - 129401213 I
e canFam3.chr16             17747517   0 -  59632846 C
e calJac3.chr3             190335007   0 - 190850796 C
e papAnu2.chr5             178231626   0 + 178775436 C
e macFas5.chr5             188804470   0 + 189454096 C
e nomLeu3.chr7b            113597633   0 + 115148730 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=6164.000000
s hg38.chr4_KI270925v1_alt     18163 39 +    555799 --AGCAAGCACACACACCTGCTAGCACACACACCTGCAAGC--
s panTro4.chr4             192715641 39 + 193495092 --tgcaagcacacacacctgctagcacgcacacctgcaagc--
i panTro4.chr4             C 0 C 0
s chlSab2.chr7             135172847 43 + 135778131 TGCACAAACACACACGCCCACAAGCACACACAGCTGCACAAAT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87419830 899 - 129401213 I
e canFam3.chr16             17747517  0 -  59632846 C
e calJac3.chr3             190335007  0 - 190850796 C
e papAnu2.chr5             178231626  0 + 178775436 C
e macFas5.chr5             188804470  0 + 189454096 C
e rheMac3.chr5             183424478 48 + 184069350 I
e nomLeu3.chr7b            113597633  0 + 115148730 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=13872.000000
s hg38.chr4_KI270925v1_alt     18202 33 +    555799 ACACGCACCAGCAAGCACACACAGCTGCAAGCA
s panTro4.chr4             192715680 33 + 193495092 acacacacctgcaagcacgcacagctgcaagca
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183424526 33 + 184069350 AGAGACAGAGACAAGCACACACAGCTGCAAGCA
i rheMac3.chr5             I 48 C 0
s chlSab2.chr7             135172890 33 + 135778131 ACACACGCCTGCAAGCACACACAGCTGCAAGCA
i chlSab2.chr7             C 0 T 260
e mm10.chr8                 87419830 899 - 129401213 I
e canFam3.chr16             17747517  0 -  59632846 C
e calJac3.chr3             190335007  0 - 190850796 C
e papAnu2.chr5             178231626  0 + 178775436 C
e macFas5.chr5             188804470  0 + 189454096 C
e nomLeu3.chr7b            113597633  0 + 115148730 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=6192.000000
s hg38.chr4_KI270925v1_alt     18235 32 +    555799 CACACAGCTGCAAGCACGCACAGCTGCAAGCA
s panTro4.chr4             192715713 32 + 193495092 cgcacagctgcaagcacgcacagctgcaagca
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183424559  9 + 184069350 --------------CACACACG---------A
i rheMac3.chr5             C 0 I 26
s chlSab2.chr7             135172663 32 + 135778131 CACACAGTTGTAAGCACACACACTTGCAAGCA
i chlSab2.chr7             T 260 C 0
e mm10.chr8                 87419830 899 - 129401213 I
e canFam3.chr16             17747517  0 -  59632846 C
e calJac3.chr3             190335007  0 - 190850796 C
e papAnu2.chr5             178231626  0 + 178775436 C
e macFas5.chr5             188804470  0 + 189454096 C
e nomLeu3.chr7b            113597633  0 + 115148730 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=28839.000000
s hg38.chr4_KI270925v1_alt     18267 48 +    555799 CGCACAGCTGCAAGCACACGCACCTGCAA-GCACACACACCTGCAA-GCA
s panTro4.chr4             192715745 48 + 193495092 cacgcacctgcaagcacacacagctgcaa-gcacacacacctgcaa-gca
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183424594 47 + 184069350 CACACAG-CACAAGCACACACGCCTGCAA-GAGCACACAGCTgcaa-gca
i rheMac3.chr5             I 26 C 0
s papAnu2.chr5             178231626 50 + 178775436 cacacagttgcaagcacacacacctgcaacgcacacgcacctgcaacaca
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135172695 48 + 135778131 CACCCACCTGCAAACACATGCACATGCAA-GCACACACACCTGCAA-GCA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87419830 899 - 129401213 I
e canFam3.chr16             17747517  0 -  59632846 C
e calJac3.chr3             190335007  0 - 190850796 C
e macFas5.chr5             188804470  0 + 189454096 C
e nomLeu3.chr7b            113597633  0 + 115148730 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=25739.000000
s hg38.chr4_KI270925v1_alt     18315 28 +    555799 CACACAGC-TGCAAGCACGCACAGCTGCA
s panTro4.chr4             192715793 28 + 193495092 cacgcacc-agcaagcacacacagctgca
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183424641 26 + 184069350 --cacacc-tgcaaacgcacacagctgca
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188804470 28 + 189454096 CACACAGT-TGTAAGCACACACACTTGCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178231676 29 + 178775436 catgcagcatgcaagcacacacagctgca
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135172743 26 + 135778131 --CACACC-TGCAGGCACACACAGCTGCA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87419830 899 - 129401213 I
e canFam3.chr16             17747517  0 -  59632846 C
e calJac3.chr3             190335007  0 - 190850796 C
e nomLeu3.chr7b            113597633  0 + 115148730 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=60457.000000
s hg38.chr4_KI270925v1_alt     18343 80 +    555799 AGCACGCACAGCTGCAAGCACACGCACCTGCAAGCACACACAGC--TGCAAGCACACACACCTGCAAGCACACACAGCTGCA
s panTro4.chr4             192715821 80 + 193495092 agcacacacagctgcaagcacacgcacctgcaagcacacacagc--tgcaagcacacacagctgcaagcacacacacctgca
i panTro4.chr4             C 0 C 0
s macFas5.chr5             188804498 80 + 189454096 AGCACACGCACCTGCAAACACATGCACATGCAAGCACACACAGC--TGCAAGCACACACAGCTGCAGGCACACACACCTGCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178231705 80 + 178775436 ggcacatacacctgcaagcacacacacctgcaggcacacacagc--tacaggcacatacacctgcaagcacacacagctgca
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135172769 82 + 135778131 AGCACACACACCTGCAGGCACATGCAGCTGCAGGCACACACAGCTATACAAACACACACGCCCGCAAGCACACACAGCTGCA
i chlSab2.chr7             C 0 I 2
e mm10.chr8                 87419830 899 - 129401213 I
e canFam3.chr16             17747517  0 -  59632846 C
e calJac3.chr3             190335007  0 - 190850796 C
e rheMac3.chr5             183424667  0 + 184069350 C
e nomLeu3.chr7b            113597633  0 + 115148730 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=43304.000000
s hg38.chr4_KI270925v1_alt     18423 61 +    555799 AGCACACGCACCAGCAAGCACACACA------------------GCTGCAAGCACACACAGCTGCAAGCACACACAGCT
s panTro4.chr4             192715901 61 + 193495092 agcacacgcaccagcaagcacacaca------------------gctgcaagcacgcacagctgcaagcacacacacct
i panTro4.chr4             C 0 I 665
s macFas5.chr5             188804578 61 + 189454096 GGCACACACACCTGCAAGCACACACA------------------CCTGCAGGCACACACACCTGCAAGCGCACACAGTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178231785 61 + 178775436 ggcacacacacctgcaggcacacaca------------------cctgcaagcacacacacctgcaggcacacacagct
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135172853 79 + 135778131 AACACACACGCCCACAAGCACACACAGCTGCACAAATACACACGCCTGCAAGCACACACAGCTGCAAGCACACACACCT
i chlSab2.chr7             I 2 C 0
e mm10.chr8                 87419830 899 - 129401213 I
e canFam3.chr16             17747517  0 -  59632846 C
e calJac3.chr3             190335007  0 - 190850796 C
e rheMac3.chr5             183424667  0 + 184069350 C
e nomLeu3.chr7b            113597633  0 + 115148730 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=14961.000000
s hg38.chr4_KI270925v1_alt     18484 21 +    555799 GCAAGCACACGCACCTGCAAG
s panTro4.chr4             192716627 21 + 193495092 gcaagcacacacatctgcaag
i panTro4.chr4             I 665 C 0
s macFas5.chr5             188804639 21 + 189454096 GCAAGCACACACAGCTGCAAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178231846 19 + 178775436 gcaggcacacac--ctgcaag
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135172932 21 + 135778131 GCAGGCGCACACACCTGCAAG
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87419830 899 - 129401213 I
e canFam3.chr16             17747517  0 -  59632846 C
e calJac3.chr3             190335007  0 - 190850796 C
e rheMac3.chr5             183424667  0 + 184069350 C
e nomLeu3.chr7b            113597633  0 + 115148730 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=15599.000000
s hg38.chr4_KI270925v1_alt     18505 18 +    555799 CACACACACCTGCAAGCA
s panTro4.chr4             192716648 18 + 193495092 cacgcacacctgcaagca
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183424667 18 + 184069350 cacacacacctgcaggca
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178231865 18 + 178775436 cacacacacctgcaggca
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135172953 18 + 135778131 CGCACACACCTGCAGGCA
i chlSab2.chr7             C 0 T 308
e mm10.chr8                 87419830 899 - 129401213 I
e canFam3.chr16             17747517  0 -  59632846 C
e calJac3.chr3             190335007  0 - 190850796 C
e macFas5.chr5             188804660  0 + 189454096 C
e nomLeu3.chr7b            113597633  0 + 115148730 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=57467.000000
s hg38.chr4_KI270925v1_alt     18523 75 +    555799 CACACAGCTGCAAGCACACGCACCTGCAAGCACACACAGCTGCAAGCACGCACACCTGCAAGCACACACAGCTGC
s panTro4.chr4             192716666 73 + 193495092 cacacagctgcaagcacgcacacctgcaagcacgcacagctgcaagcac--acagcagcaagcacacacacctgc
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183424685 74 + 184069350 cacacagc-acaagcacacacgcctgcaagcacacacgcctgcaagcacacacagctgcaagagcacacagctgc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188804660 35 + 189454096 --------------CACACACACCTGCAGGCACACACACCTGCAAGCGC--------------------------
i macFas5.chr5             C 0 I 5
s papAnu2.chr5             178231883 75 + 178775436 cacacagctgcaggcacacacacctgcaagcacacacacctgcagacacacacacctgcaagcacacacacctgc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135172663 75 + 135778131 CACACAGTTGTAAGCACACACACTTGCAAGCACACCCACCTGCAAACACATGCACATGCAAGCACACACACCTGC
i chlSab2.chr7             T 308 C 0
e mm10.chr8                 87419830 899 - 129401213 I
e canFam3.chr16             17747517  0 -  59632846 C
e calJac3.chr3             190335007  0 - 190850796 C
e nomLeu3.chr7b            113597633  0 + 115148730 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=47700.000000
s hg38.chr4_KI270925v1_alt     18598 73 +    555799 AAGCACACAC--CAGCAAGCACACACACCTGCAAGCACACACAGCTGCAAGCACA--CAGCAG--CAAGCACACACACC
s panTro4.chr4             192716739 75 + 193495092 aagcacacacagctgcaagcacgcacacctgcaagcacacgcacctgcaagcaca--cacctg--caagcacacacacc
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183424759 79 + 184069350 aagcacacacacctgcaagtgcacacacctgcaggcacacacagctgcaggcacacacAGCTGcacaaacacacacgtc
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178231958 75 + 178775436 aggcacacacagctgcag--gcacacacctgcaggcacacacacctgcaggcacacacagctg--caggcacacacacc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135172738 75 + 135778131 AAGCACACAC--CTGCAGGCACACACAGCTGCAAGCACACACACCTGCAGGCACATGCAGCTG--CAGGCACACACAGC
i chlSab2.chr7             C 0 I 38
e mm10.chr8                 87419830 899 - 129401213 I
e canFam3.chr16             17747517  0 -  59632846 C
e calJac3.chr3             190335007  0 - 190850796 C
e macFas5.chr5             188804695  5 + 189454096 I
e nomLeu3.chr7b            113597633  0 + 115148730 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=15087.000000
s hg38.chr4_KI270925v1_alt     18671 34 +    555799 TGCAAGCACACACAGCTGCAAGCATGCACACCTG
s panTro4.chr4             192716814 34 + 193495092 tgcaagcacacacacctgcaagcacgcacacctg
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183424838 32 + 184069350 tgcaagcacacacagctgca--cacacacacctg
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178232033 34 + 178775436 tgcaggcacacacagctacaggcacacacacctg
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87419830 899 - 129401213 I
e canFam3.chr16             17747517  0 -  59632846 C
e calJac3.chr3             190335007  0 - 190850796 C
e chlSab2.chr7             135172813 38 + 135778131 I
e macFas5.chr5             188804695  5 + 189454096 I
e nomLeu3.chr7b            113597633  0 + 115148730 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=10164.000000
s hg38.chr4_KI270925v1_alt     18705 42 +    555799 CAAGCACACGCACCTGCAAGCACACACAGCTGCAAGCGCACA
s panTro4.chr4             192716848 35 + 193495092 caagcacacacACCTGCAAGCACACAC--CTGcaagc-----
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183424870 41 + 184069350 caagcacacaca-gcacaagcacacacgcctgcaagagcaca
i rheMac3.chr5             C 0 I 2
s papAnu2.chr5             178232067 26 + 178775436 cagtcacacaca----------------cctgcactaacaca
i papAnu2.chr5             C 0 I 2
s chlSab2.chr7             135172851 34 + 135778131 CAAACACACACGCCCACAAGCACACACAGCTGCA--------
i chlSab2.chr7             I 38 C 0
e mm10.chr8                 87419830 899 - 129401213 I
e canFam3.chr16             17747517  0 -  59632846 C
e calJac3.chr3             190335007  0 - 190850796 C
e macFas5.chr5             188804695  5 + 189454096 I
e nomLeu3.chr7b            113597633  0 + 115148730 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=60447.000000
s hg38.chr4_KI270925v1_alt     18747 63 +    555799 GCAGCAAGCACACACACCTGCAAGCACACACAGCTGCAAGCACGCACACCTGCAAGCACACGC
s panTro4.chr4             192716883 52 + 193495092 -----------acacacctgcaagcacacacagctgcaagcacgcacacctgcaagcacacgc
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183424913 59 + 184069350 gctgcaag--cacacacctgcaaacgcacacagctgca--cacacacacctgcaggcacacac
i rheMac3.chr5             I 2 C 0
s macFas5.chr5             188804700 63 + 189454096 GTTGCAAGCACACACACCTGCAGGCACACACACCTGCAGGCACACACACCTGCAGGCACACAC
i macFas5.chr5             I 5 C 0
s papAnu2.chr5             178232095 62 + 178775436 cctgcaggcacacacagctgcaggcacacacagc-gcaagcacacacacctgcaagcacacac
i papAnu2.chr5             I 2 C 0
s chlSab2.chr7             135172885 59 + 135778131 ----CAAATACACACGCCTGCAAGCACACACAGCTGCAAGCACACACACCTGCAGGCGCACAC
i chlSab2.chr7             C 0 T 212
e mm10.chr8                 87419830 899 - 129401213 I
e canFam3.chr16             17747517  0 -  59632846 C
e calJac3.chr3             190335007  0 - 190850796 C
e nomLeu3.chr7b            113597633  0 + 115148730 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=52945.000000
s hg38.chr4_KI270925v1_alt     18810 64 +    555799 ACCTGCAAGCACACACCTGCAAGCACACACACCTGCAAGCACACACAGCTGCAAGCACACACAG
s panTro4.chr4             192716935 62 + 193495092 acctgcaagcacacacctgcaagcacacacacctgcaagcacacac--ctgcaagcacacacag
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183424972 49 + 184069350 --------------agc-acaagcacacacgcctgcaagcacacacaGCTGCAAGAGCACACAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188804763 49 + 189454096 --------------AGC-ACAAGCACACACGCCTGCAAGCACACACAGCTGCAAGAGCACACAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178232157 50 + 178775436 --------------acctgcaggcacacacacctgcaagcacacacacctgcaagcacacacag
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135172732 64 + 135778131 ACCTGCAAGCACACACCTGCAGGCACACACAGCTGCAAGCACACACACCTGCAGGCACATGCAG
i chlSab2.chr7             T 212 C 0
e mm10.chr8                 87419830 899 - 129401213 I
e canFam3.chr16             17747517  0 -  59632846 C
e calJac3.chr3             190335007  0 - 190850796 C
e nomLeu3.chr7b            113597633  0 + 115148730 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=27927.000000
s hg38.chr4_KI270925v1_alt     18874 15 +    555799 CTGCAAGCACACACA
s panTro4.chr4             192716997 15 + 193495092 ctgcaagcacgcaca
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113597633 15 + 115148730 ctgcaagcacacaca
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183425021 15 + 184069350 CTgcaagcacacaca
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188804812 15 + 189454096 CTGCAAGCACACACA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178232207 15 + 178775436 ttgcaagcacacaca
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135172796 15 + 135778131 CTGCAGGCACACACA
i chlSab2.chr7             C 0 I 133
e mm10.chr8                 87419830 899 - 129401213 I
e canFam3.chr16             17747517  0 -  59632846 C
e calJac3.chr3             190335007  0 - 190850796 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=15743.000000
s hg38.chr4_KI270925v1_alt     18889 29 +    555799 CCTGCAAGCACACAC--CTGCAAGCACACAT
s panTro4.chr4             192717012 15 + 193495092 cctgcaagcacacac----------------
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113597648 15 + 115148730 gctgcaagcacacag----------------
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183425036 31 + 184069350 cctgcaagtgcacacacctgcaggcacacac
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188804827 31 + 189454096 CCTGCAAGTGCACACACCTGCAGGCACACAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178232222 31 + 178775436 gctgcaagcacacacaccggcaggcacacac
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87419830 899 - 129401213 I
e canFam3.chr16             17747517  0 -  59632846 C
e calJac3.chr3             190335007  0 - 190850796 C
e chlSab2.chr7             135172811 133 + 135778131 I
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=28847.000000
s hg38.chr4_KI270925v1_alt     18918 24 +    555799 ACCTGCAAGCACACACACCTGCAA
s panTro4.chr4             192717027 24 + 193495092 acctgcaagcacacacacctgcaa
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113597663  6 + 115148730 ------------------ctgcaa
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183425067 24 + 184069350 agctgcaagcacacacacctgcgg
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188804858 24 + 189454096 AGCTGCAAGCACACACACCTGCGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178232253 24 + 178775436 agctgcaggcacacacacctgcag
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135172944 24 + 135778131 ACCTGCAAGCGCACACACCTGCAG
i chlSab2.chr7             I 133 C 0
e mm10.chr8                 87419830 899 - 129401213 I
e canFam3.chr16             17747517  0 -  59632846 C
e calJac3.chr3             190335007  0 - 190850796 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=382690.000000
s hg38.chr4_KI270925v1_alt     18942 204 +    555799 GCACACACA--AAATGAGTGCAAGAGAGAATGTGCTCAGTACTTGGTCTGGTGTTCCTTGATAGCAAAATAAATAATAAGAATAAAGGCAATGATGTGTTTTTAGATCTGCAACGTGAAAACAGGGGTGGGTAGGGGGTGGGGGACATTGGTTGAAAACCGAACCAAACAAAAAAGTGCA---GAGAAC---ACACGACCAA-TTCTCTCATC
s panTro4.chr4             192717051 206 + 193495092 gcacacacacaAAATGAGTGCAAGAGAGAATGTGCTCAGTACTTGGTCTGGTGTTCCTTGATAGCAAAATAAATAATAAGAATAAAGGCAATGATGTGTTTTTAGATCTGCAACGTGAAAACAGGGGTGGGTAGGGGGTGGGGGACATTGGTTGAAAACCAAACCAAACAAAAAAGTGCA---GAGAAC---ACACGACCAA-TTCTCTCATC
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113597669 208 + 115148730 gcacacacacaAAATGAGTGCAAAAGAGAATGTGCTCAGTACTTGGTCTGGTGTTCCTTGATAGCAAAAGAAATAATAAGAATAAGGGCAATGATGTGTTTTTAGATGTGCAACATGAAAGCAGGGGTGGGCAGGGGATGGGGG-TGTCGGTTGAAACCTGAACCAAACAAAAAAGTGCAGCGGAGAAC---ACACAACCAA-TTCTCTCATC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183425091 209 + 184069350 gcacacacacaAAATAAGCGTAAGAGAGAATGTGCTCAGTACTTGGTCTGGTATTCCTTGATAGCAACAGAAATAATGAGAATAAAGGCAATTATGTGTTTTTAGATCTGCAACATGAAAGCAGGGGTGGACGGGGGGCGGGGGACGTTGGCTGAAAACCGAACCAAACAAAAAAGTGCAGAAGAGAAC---ACAGGACCAA-TTCTCTCATC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188804882 209 + 189454096 GCACACACACAAAATAAGCGTAAGAGAGAATGTGCTCAGTACTTGGTCTGGTATTCCTTGATAGCAACAGAAATAATGAGAATAAAGGCAATTGTGTGTTTTTAGATCTGCAACATGAAAGCAGGGGTGGACGGGGGGCGGGGGACGTTGGCTGAAAACCGAACCAAACAAAAAAGTGCAGAAGAGAAC---ACAGGACCAA-TTCTCTCATC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178232277 208 + 178775436 gcacacacacaaaataagcgTAAGAGAGAATGTGCTCAGTACTTGGTCTGGTATTCCTTGATAGCAACAGAAATAATGAGAATAAAGGCAATTAGGTGTTTTTAGATCTGCAACATGAAAGCAGGGGTGGACGGGGGGC-GGGGACGTTGGCTGAAAACCGAACCAAACAAAAAAGTGCAGAAGAGAAC---ACAGGACCAT-TTCTCTCATC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135172968 209 + 135778131 GCACACACACAAAATAAGCGTAAGAGAGAATGTGCTCAGTACTTGGTCTGGTATTCCTTGATAGAAACAGAAATAAAGAGAATAAAGGCAATTATGTGTTTTTAGAGCTGCAACATGAAAGCAGGGGTGGACGGGGGGCGGGGGACGTTGGCTGAAAACCGAACCAAACAAAAAAGCGCAGGGGAGAAC---ACAGGACCAA-TTCTCTCATC
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17747517 168 -  59632846 --ACACACACACAATGAGTATAAAAGGCAACGTGATCATTATGTGCTCAGGAGTCTTGTGATAACAAAAGAGCTAATCAGGACAAAAGCAATCACACATTTTTAGACCTGCAATAGGAAAAAA------------------------------------------AAAAAAAAAAGC-CATCAGGAAACTAGAGATGACCAGTTTCTCTCATC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87419830 899 - 129401213 I
e calJac3.chr3             190335007   0 - 190850796 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=428436.000000
s hg38.chr4_KI270925v1_alt     19146 251 +    555799 AAAGGATCATCTTACTGTGGCCAGGTGTGGTAAC-------------CCGAGCACTTGGGG-Aggccaag-----------------------------------------------atgatgaaaccctgtctctactaaaaaacacaaaaattagtagggtgtggtagtgggcacctgtaatcccagctacctgtgaggctgaggcaggagaatcacattaactccggaggtggaggttgcagtgagccgagatcctgccaccgcactccagtctgggcgacagagcgagactccgcctcaaaaaaaaaa
s panTro4.chr4             192717257 252 + 193495092 AAAGGATCATCTTACTGTGGCCAGGTGTGGTAAC-------------CCGAGCACTTGGGGGAggccaag-----------------------------------------------atgatgaaaccctgtctctactaaaaaacacaaaaattagtagggtgtggtagtgggcacctgtaatcccagctacctgtgaggctgaggcaggagaatcacattaactccggaggtggaggttgcagtgagccgagatcgtgccaccgcactccagtctgggcgacagagcaagactctgtctcaaaaaaaaaa
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113597877 251 + 115148730 AAAGGATCATCTTACTGTGGCCAGGTGTGGTAAC-------------CTGAGCACTTGGGG-Aggccaag-----------------------------------------------atgatgaaaccctgtctctactaaaaaacacaaaaactagtagggcgtggtggcgggcgcctgtaatcccagctacctgtgaggctgaggcaggagaatcgctttaactccagaggcggaggttgcagggagccgagatcgcgccactgcactccagtctgggcgacagagcaagactccatctcaaaaaaaaaa
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183425300 310 + 184069350 AAAGGATCATCTTACTGTgaccgagtgtggtagctcatgcctgtaatccgagcactttggg-agaccgaggtgagtggatcacttgaggtcagcagtttgagaccagcctggccaacatgatgaaactctgtctctactaaaaaacacaaaaattagtagggtgtggtggc-ggcgcctgtaatccccgctacctgtgaggctgaggcaggagaatcgctttaactccagaggcggagcttgcagtgagcagagatcgcaccactgaacttcagtctgggcaacagagcaagactccgtctcaaaaaaaaaa
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188805091 306 + 189454096 AAAGGATCATCTTACTGTgaccgagtgtggtagctcatgcctgtaatccgagcactttggg-agaccgaggtgagtggatcacttgaggccagcagtttgagaccagcctggccaacatgatgaaactctgtctctactaaaaaccacaaaaattagtagggtgtggtggc-ggcgcctgtaatccccgctacctgtgaggctgaggcaggagaatcgctttaactccagaggcggagcttgcagtgagcagagatcgcgccactgaacttcagtctgggcaacagagcaagactccatctc----aaaaaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178232485 307 + 178775436 AAAGGATCATCTTACTGTGACcgagtgtggtagctcatgcctgtaatccgagcactttggg-agaccgaggtgagtggatcacctgaggtcagcagtttgagaccagcctagccaacatgatgaaactctgtctctactaaaaaacacaaaaattagtagggcgtggtggc-ggcgcctgtaatccccgctacctgtgaggctgaggcaggagaatcgctttaactccagaggcggagtttgcagtgagcggagatcgcgccactgaacttcagtctgggcaacagagcgagactccgtctc---aaaaaaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135173177 308 + 135778131 AAAGGATCTTCTTACTGTggccgagtgtggtagctcatgcctgtaatccaagcactttggg-aggccaaggtgagtggatcacttgaggtcagcagtttgagaccagcctggccaatatgatgaaactctgtctctactaaaaaacccaaaaattagtagggcgtggtggc-agcgcctgtaatccccgctacctgtgaggctgaggcaggagaatcgctttaactccagaggcggagcttgcagtgagctgagatcgcgccactgcacttcagtctgggcaacagagcaagactccgtttc--aaaaaaaa
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87419830 899 - 129401213 I
e canFam3.chr16             17747685   0 -  59632846 C
e calJac3.chr3             190335007   0 - 190850796 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=54070.000000
s hg38.chr4_KI270925v1_alt     19397 45 +    555799 aaa----aaaCCATCTTATTTTGAACTC-------CCACTCG----------AGAAATACACAGCC----
s panTro4.chr4             192717509 42 + 193495092 aaa-------CCATCTTATTTTGAACTC-------CCACTCG----------AGAAATACACAGCC----
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113598128 49 + 115148730 aaaaaaaaaaaaGTCTTATTGTGAACTC-------CCACTCG----------AGAAATACACAACC----
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183425610 47 + 184069350 aaa---------aTCTTATTTTGAACTCGAGAAATACACTCG----------AGAAATACACAGCC----
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188805397 47 + 189454096 aaa---------aTCTTATTTTGAACTCGAGAAATACACTCG----------AGAAATACACAGCC----
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178232792 57 + 178775436 aaa---------atcttattttgaacTCGAGAAATACACTCGagaaatacacagaaatacacaGCC----
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135173485 40 + 135778131 aaa---------aTCTCATTTTGAACTC-------CCACTCG----------AGAAATACACAGCC----
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17747685 49 -  59632846 ----AGAAAATGATCTTGTTTTGCACTT-------CCAATGA----------GGAACTTCATAGTATGAT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87419830 899 - 129401213 I
e calJac3.chr3             190335007  0 - 190850796 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=231783.000000
s hg38.chr4_KI270925v1_alt     19442 102 +    555799 TAAGTTGGGTGATTATACACAATGGCCACGTTCTGATGTTCTTGAATTAAACACCAAAAAGTAA-AAGC--AAACACTTTTCATTT-AGAAGATATTCACAGACCT--------
s panTro4.chr4             192717551 102 + 193495092 TAAGTTGGGTGATTATACACAATGGCCGTGTTCTGATGTTCTTGAATTAAACACCAAAAAGTAA-AAGC--AAACACTTTTCATTT-AGAAGATATTCACAGACCT--------
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113598177 103 + 115148730 TAAGTTAGGTGATTATACACAATGGCCATGTTCTAATGTTCTTGAATTAAACACCAAAAAGTAA-AAGC-AAAACACTTTTCATTT-AGAAGATATTCACAGGCCT--------
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183425657 103 + 184069350 TAAGTTGGGTGATTATACATAATGGCCATGTTCTAATGTTCTTGGATTAAACACCAAAAAGTAA-AAGT-AAACCATTTTTCATTT-AGAAGATATTCACAGACCT--------
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188805444 103 + 189454096 TAAGTTGGGTGATTATACATAATGGCCATGTTCTAATGTTCTTGGATTAAACACCAAAAAGTAA-AAGT-AAACCATTTTTCATTT-AGAAGATATTCACAGACCT--------
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178232849 103 + 178775436 TAAGTTGGGTGATTATACACAATGGTCATGTTCTAATGTTCTTGGATTAAACaccaaaaagtaa-aagt-aaaccaTTTTTCATTT-AGAAGATATTCACAGACCT--------
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135173525 103 + 135778131 TAAGTCGGGTGATTATACACAATAGCCATGTTCTAATGTTCTTGGATTAAACACCAAAAAGTAA-AAGT-AAACCATTTTTCATTT-AGAAGATATTCACAGACCT--------
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87420729 103 - 129401213 TAAATCCACTAAGTAGATATGATGGTCCCTTTCTAAAACTCTTGAATTCAGCAC--AGAAGTAACAACT-AAAACATTGTCCTTTTAAGAAGAGATTCACATgctt--------
i mm10.chr8                I 899 I 1400
s canFam3.chr16             17747734 113 -  59632846 TACATTGAGTGATTATATATAATGACCACATTTTAATGTTCTTGAATTGGGCACCAAGAATAAA-AAACTAAAACATTTTCCATTTAAGAAGACATGGATGATTGTGGAGTAAC
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190335007   0 - 190850796 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=24464.000000
s hg38.chr4_KI270925v1_alt     19544 13 +    555799 ACTACCGATATCT
s panTro4.chr4             192717653 13 + 193495092 ACTACCGATATCT
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113598280 13 + 115148730 AGTACTGATATCT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183425760 13 + 184069350 ACTACTGATACCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188805547 13 + 189454096 ACTACTGATACCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178232952 13 + 178775436 ACTACTGATACct
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135173628 13 + 135778131 ACTACTGATACCT
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17747847 13 -  59632846 ATTACTATCACCC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87420832 1400 - 129401213 I
e calJac3.chr3             190335007  0 - 190850796 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=1475941.000000
s hg38.chr4_KI270925v1_alt     19557 694 +    555799  
s panTro4.chr4             192717666 694 + 193495092  
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113598293 691 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183425773 695 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188805560 695 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178232965 696 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135173641 691 + 135778131  
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87422232 670 - 129401213  
i mm10.chr8                I 1400 I 5188
s canFam3.chr16             17747860 684 -  59632846  
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190335007   0 - 190850796 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=214888.000000
s hg38.chr4_KI270925v1_alt     20251 106 +    555799 AGAAGCTCTTCTACCAACCACACAGAGTAATTGACTCAGAG-GAGATTAGGTTAGACTCTGGAGCCTGAACGAAGCT-------------TCAGAACAGGGATTAGCATGCtttatttta
s panTro4.chr4             192718360 107 + 193495092 AGAAGCTCTTCTACCAACCACACAGAGTAATTGACTCAGAGTGAGATTAGGTTAGACTCTGGAGCCTGAACAAAGCT-------------TCAGAACAGGGATTAGCATGCtttatttta
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113598984 107 + 115148730 AGAAGCTCTTCTACCAACCACACAGAGTAATTGACTTAGAGTGAGATTAGGTTAGACTCTGGAGCCTGAACAAATCT-------------TCAGAACAGGGATTAGCATGttttatttta
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183426468 107 + 184069350 AGAAGCTCTTCTACCAACCACACAGAGTAATTGACTTAGAGTGAGATTAGGTTAGACTCTGTAGCCTGAACAAAGCT-------------TCAGAACAGGGATTAGCATGCtttattttt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188806255 107 + 189454096 AGAAGCTCTTCTACCAACCACACAGAGTAACTGACTTAGAGTGAGATTAGGTTAGACTCTGGAGCCTCAACAAAGCT-------------TCAGAACAGGGATTAGCATGCtttattttt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178233661 107 + 178775436 AGAAGCTCTTCTACCAACCACACAGAGTAATTGACTTAGAGTGAGATTAGGTTAGACTCTGGAGCCTGAACAAAGCT-------------TCAGAACAGGGATTagcatgctttattttt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135174332 107 + 135778131 AGAAGCTCTTCTATCAACTGCACAAAGTAATTGACTTAGAGTGAGATTAGGTTAGACTCTGGAGCCTGAACAAAGCT-------------TCAGAACAGGGATTAGCATGCTTTATTTTT
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17748544 104 -  59632846 ----------------ACCACATGTAAAAATTGACCCAAAGTGAAATTAGGTAAGATTCAAAAGATTAGACAAAGTTAAATTATCTAAACTTGGAATAGGGATCAGTACATTTTTCTGTA
i canFam3.chr16            C 0 I 3
e mm10.chr8                 87422902 5188 - 129401213 I
e calJac3.chr3             190335007   0 - 190850796 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=1860985.000000
s hg38.chr4_KI270925v1_alt     20357 1085 +    555799  
s panTro4.chr4             192718467 1075 + 193495092  
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113599091 1104 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183426575 1091 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188806362 1096 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178233768 1101 + 178775436  
i papAnu2.chr5             C 0 M 580
s chlSab2.chr7             135174439 1097 + 135778131  
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87422902 5188 - 129401213 I
e canFam3.chr16             17748648    3 -  59632846 I
e calJac3.chr3             190335007    0 - 190850796 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=214151.000000
s hg38.chr4_KI270925v1_alt     21442 173 +    555799 ctgtctctactaaagatac-aaaaatcagctgggtgtggtggcgcatgcttgcaatcccagctagtagggaggctggggcaggacaatcacttgaacccaggagttggaggtagcagtgagccgagattgtgccactgcactccagcctgggagacagagccagactccgtctc
s panTro4.chr4             192719542 173 + 193495092 ctgtctctactaaagatac-aaaaatcagctgggtgtggtggcgcatgcttgcaatcccagctaatagggaggctggggcaggacaatcacttgaacccaggaggtggaggtagcagtgagccgagattgtgccactgcactccagcctgggagacagagccagactccgtctc
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113600195 173 + 115148730 ctgtctctactaaagatac-aaaaagtagctgggtgtggtggcacatgcttgtaatcccagctagtagagaggctggggcaggagaatcacttgaacccaggaggtggaggttgcagtgagccgaaattgtgccactgcactgcagcctgggagacagaggcagactccgtctc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183427666 174 + 184069350 ctgtctctactaaagatacaaaaaattagccaggcgtggtggtgcacgcctgtaatctcagctactagggaggttggggcaggagaatcgcttgaatccaggaggtggaggttgcagtgagccgagattgtgccactgcactccagcctgggagacagagacagactctgtcac
i rheMac3.chr5             C 0 I 14
s macFas5.chr5             188807458 174 + 189454096 ctgtctctactaaagatacaaaaaatgagccaggcgtggtggtgcacgcctgtaatctcagctgctagggaggttggggcaggagaatcgcttgaatccaggaggtggaggttgcagtgagccgagattgtgccactgcactccagcctgggagacagagacagactctgtcac
i macFas5.chr5             C 0 I 14
s chlSab2.chr7             135175536 174 + 135778131 ctgtctctactaaagatacaaaaaattagctgggcgtggtggtgcacgcctgtaatcccagctactagggaggttggggcaggagaatcgcttgaatccaggaggtggaggttgcagtgagccgagattgtgccactgcactccagcctggaagacagagacagactctgtcac
i chlSab2.chr7             C 0 I 11
e mm10.chr8                 87422902 5188 - 129401213 I
e canFam3.chr16             17748648   3 -  59632846 I
e calJac3.chr3             190335007   0 - 190850796 C
e papAnu2.chr5             178234869 580 + 178775436 M
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=170912.000000
s hg38.chr4_KI270925v1_alt     21615 103 +    555799 aaaaaaaaaaaaaaaaa------gagagagaaaaaTCCCAGTCCTATCTACATACTCAGGAAACTTACAATTAACATGACCAGAGAATAggccaaatttggtccttgcc
s panTro4.chr4             192719715 108 + 193495092 aaaaaaaaaaaaaaaaa-aGAGAGAGAGAGAAAAATCCCAGTCCTATCTACATACTCAGGAAACTTACAATTAACATGACCAGAGAATAggccaaatttggtccttgcc
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113600368 109 + 115148730 aaaaaaaaaaaaaaaaaaaaaaagaaaaagaaaaaTCCCAGTCCCATCTACATACTTAGGAACCTCACAATTTACATGACCAGAGAATAggccaaatttggtccttgcc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183427854 103 + 184069350 agaaagaaagaaaaaga------aagaaagaaaaaTCCCAGTACCATCTACATACTTAGGAATTTCACAATTTACATGACCAGAGCATAggccaaatttggtccttgcc
i rheMac3.chr5             I 14 C 0
s macFas5.chr5             188807646 103 + 189454096 agaaagaaagaaaaaga------aagaaagaaaaaTCCCAGTACCATCTACATACTTAGGAATTTCACAATTTACATGACCAGAGCATAggccaaatttggtccttgcc
i macFas5.chr5             I 14 C 0
s papAnu2.chr5             178235453 103 + 178775436 aaaaaaaaaaaaaaaga------aagaaagaaaaatcccagTACCATCTACATACTTAGGAATTTCACAATTTACATGACCAGAGCATAGGCCAAATTTGGTCCTTGCC
i papAnu2.chr5             M 580 C 0
s chlSab2.chr7             135175721 103 + 135778131 aaaaaaagaaagaaaga------aaGAAAGAAAAATCCCAGTACCATCTACATACTTAGGAATTTCACAATTTACATGACCAGAGCATAggccaaatttgttccttgcc
i chlSab2.chr7             I 11 C 0
e mm10.chr8                 87422902 5188 - 129401213 I
e canFam3.chr16             17748648   3 -  59632846 I
e calJac3.chr3             190335007   0 - 190850796 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=1604365.000000
s hg38.chr4_KI270925v1_alt     21718 795 +    555799  
s panTro4.chr4             192719823 799 + 193495092  
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113600477 793 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183427957 795 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188807749 794 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178235556 795 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135175824 794 + 135778131  
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17748651 745 -  59632846  
i canFam3.chr16            I 3 I 1058
e mm10.chr8                 87422902 5188 - 129401213 I
e calJac3.chr3             190335007   0 - 190850796 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=160203.000000
s hg38.chr4_KI270925v1_alt     22513 93 +    555799 accagaatttaagtagcatcatccctcagggccctggagaccctcttctcttctTCCAATCTCTGCAACCCATAGACAATATTGCAAGGCCCA
s panTro4.chr4             192720622 93 + 193495092 accagaatttaagtagcgtcattcctcagggccctggagaccctcttctcttctTCCAATCTCTGCAACCCATAGACAATATTGCAAGGCCCC
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113601270 93 + 115148730 accagaatttaagtagcatcattcctcagggccccgtatatcctcttctcttttTCCAATCTCTGCAACCCATAGACAATATTGCAAGGCCCA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183428752 93 + 184069350 accggaatttaagtagcatcattcctcaggaacctggagatcctcctcccttcttccaaactcTGCAACCCATAGACAATATTGCAAGGCCCA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188808543 93 + 189454096 accggaatttaagtagcatcattcctcaggaacctggagatcctcctcccttcttccaaactcTGCAACCCATAGACAATATTGCAAGGCCCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178236351 93 + 178775436 AACTGAATTTAAGTAGCATCATTCCTCAGGAAACTGGAGATCCTCCTCTCTTCTTCCAATCTCTGCAACCCAGAGACAATATTGCAAGGCCCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135176618 93 + 135778131 acccgaatttaagtatcatcattcctcaggaacctggagatcctcctctcttctTCCAATCTCTGCAACCCATAGACAATATTGCAAGGCCCG
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87422902 5188 - 129401213 I
e canFam3.chr16             17749396 1058 -  59632846 I
e calJac3.chr3             190335007  0 - 190850796 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=1808541.000000
s hg38.chr4_KI270925v1_alt     22606 910 +    555799  
s panTro4.chr4             192720715 912 + 193495092  
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113601363 907 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183428845 985 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188808636 946 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178236444 948 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135176711 919 + 135778131  
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17750454 933 -  59632846  
i canFam3.chr16            I 1058 C 0
e mm10.chr8                 87422902 5188 - 129401213 I
e calJac3.chr3             190335007   0 - 190850796 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=443198.000000
s hg38.chr4_KI270925v1_alt     23516 196 +    555799 tttttggacttgttacttGCATAATAGGAGAAAAACAGTAATTCAAACAAGTAAATTGGAGCTTGATTCTATTTAAATATTAAAATTTAAAAGGAACAAAACTAAAAGTACTG-GAAGTAAAAATTAGAAAGCCACAAGAAAATAGATAAACTAAAAATAATTTGTTGAGATATTTATATTCTCAGGCATAAAACAT
s panTro4.chr4             192721627 195 + 193495092 TTTTTGGGCTTATTACTTGCATAATAGGAGAAAAA-AGTAATTCAAACAAGTAAATTGGAGTTTGATTCtatttaaatattaaaatttaaaCGGAACAAAACTAGAAGTACTG-GAAGTAAAACTTAGAAAGCCACAAGAAAATAGATAAACTAAAAATAATTTGTTGAGATATTTATATTCTCAGGCATAAAACAT
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113602270 196 + 115148730 TTTGTGGACTTACTACTTGCATAATAAGAGAAAAACAGTAATTCAAACAAGTAAATTAGAGTTTGATTCTATTTAAATATTAAAATTTAAAAGGAACAAAACTAAAAGTACTG-GAAGTAGAAATTAGAAAGCCACAAGAAAATAGATAAACTAAAAATAATTTGTTGAGATATTTATATTCTCAGGCATAAAACAt
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183429830 193 + 184069350 ATTGTGGACTTGTTACTTGCATAATAAGATAAAATCAGTAATTCAAACAAGTAAATTGGAGTTTGATTCtatttaaatattaaaatttaaaaGAAACGAAACTAAAAGTCCTG-GAAGTAAAAATTAGAACGCCACAAGAAAATAGATAAACT---AACAATTTGTTGAGATATTTATATTCTCAGGCATAAAACAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188809582 193 + 189454096 ATTGTGGACTTGTTACTTGCATAATAAGATAAAATCAGTAATTCAAACAAGTAAATTGGAGTTTGATTCTATTTAAATATTAAAATTTAAAAGAAACGAAACTAAAAGTCCTG-GAAGTAAAAATTAGAACGCCACAAGAAAATAGATAAACT---AACAATTTGTTGAGATATTTATATTCTCAGGCATAAAACAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178237392 196 + 178775436 ATTGTGGATTTAATACTTGCATAATAAGATAAAAACAGTAATTCAAACAAGTAAATTGGAGTTTgattctatttaaatattaaaatttaaaaggaacaaaactaaAAGTCCTG-GAAGTAAAAATTAGAATGCCACAAGAAAATAGATAAACTAAAAACCATTTGCTGAGATATTTATATTCTCAGGCATAAAACAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135177630 196 + 135778131 ATTGTGGACTTATTACTTGCATAATAAGATAAAAACAGTAATTCAAACAAGTAAATTGGAGTTTGATTCTATttaaatattaaaatttaaaaggaacaaaactaaaagtcctg-gaagtaaaaattagaaCGCCACAAGAAAATAGATAAACTAAAAACAATTTGTTGAGATATTTATATTCTCAGGCATAAAACAT
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87428090 158 - 129401213 TTCCTAGAATTACTTACTGTGAGGTAAAAGAAAGACAAAAACTTAAAAGATTACATTGGAGTTTAATGCCGTTCAAATATTAAAATTTAGAAGGAGTGAAACTAAATGTCCAG------AGAAATAAGAGAGTCACAAGAATACAGAGAAACTGATTGCAA----------------------CAG-----------
i mm10.chr8                I 5188 C 0
s canFam3.chr16             17751387 189 -  59632846 ----taagtgtgttgtgtgcataataaatgaaaaACAATAATTCAAAAAAGTAAATTGGAATTTGACTCCATTCAAATATTAAAATTTAGAAGAAACAAAACTAACAGTCCTGAGAAGTAGTAAC--AGAAGCCCCAAGAAAATAAGTAAACTAAAAGCAATTTA--AAGATATTTATATTCTTGGATGTAAAACAT
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190335007   0 - 190850796 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=247911.000000
s hg38.chr4_KI270925v1_alt     23712 168 +    555799 CTTGATTTCACTGCCAAAA-AACATGATATAT--------TCT----------------TAATATAAAAAGTGTAT----------------------------GAGTTAGAA------------------------------ATAT-----------ATAGAATCACAAAGATATTTGTCATTTCACTTCAAACAACAACAAAA-----AAATGGTAAAACTGTCTTCAA---------TTCTAG--------------AATAATGTGAGATGAGAAACCTTAAGTGTT
s panTro4.chr4             192721822 168 + 193495092 CTTGATTTCACTGCCAAAA-AACATGATATAT--------TCT----------------TAATATAAAAAGTGTAT----------------------------GAGTTAGAA------------------------------ATAT-----------ATAGAATCACAAAGATATTTGTCATTTCACTTCAAACAACAACAAAA-----AAATGGTAAAACTGTCTTCAA---------TTCTAG--------------AATAATGTGAGATGAGAAACCTTAAGTGTT
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183430023 169 + 184069350 CTTGATTTCACTGCCAAAATAACATGATATAT--------TCTTA----AA-------ATAATATAAAAAGTGTAT------------------------------GTTAGAA------------------------------ATAT-----------ATAGAATCACAAAGATATTTGTCATTTCACTTCAAACAACAACA--------AAACGGTAAAACCATCTTCAG---------TTCTAG--------------AATAATGTGAGATGAGAAACCTTAAGTGTT
i rheMac3.chr5             C 0 I 46
s macFas5.chr5             188809775 169 + 189454096 CTTGATTTCACTGCCAAAATAACATGATATAT--------TCTTA----AA-------ATAATATAAAAAGTGTAT------------------------------GTTAGAA------------------------------ATAT-----------ATAGAATCACAAAGATATTTGTCATTTCACTTCAAACAACAACA--------AAACGGTAAAACCATCTTCAG---------TTCTAG--------------AATAATGTGAGATGAGAAACCTTAAGTGTT
i macFas5.chr5             C 0 I 46
s papAnu2.chr5             178237588 168 + 178775436 CTTAATTTCACTGCCAAAATAACAtgatatat--------tctta----aa-------ataatataaaaagtgtAT------------------------------GTTAGAA------------------------------ATAT-----------ATAGAATCACAAAGATATTTGTCATTTCacttcaaacaacaaca--------aaacggtAAAACCATC-TCAG---------TTCTAG--------------AATAATGTGAGATGAGAAACCTTAAGTGTT
i papAnu2.chr5             C 0 I 184
s chlSab2.chr7             135177826 172 + 135778131 CTTAATCTCACTGCCAAAATAACATGATATAT--------TCTTA----AA-------ATAATATAAAAAGTGTAT------------------------------GTTAGAA------------------------------ATAT-----------ATAGAATCACAAAGCTATTTGTCATTTCACTTCAAACAACAACAACG-----AAACGGTAAAACCGTCTTCAG---------TTCTAG--------------AACAATGTGAGATGAGAAACCTTAAGTGTT
i chlSab2.chr7             C 0 I 230
s mm10.chr8                 87428248 237 - 129401213 CTTGGTCTCACTGCAAGAAAAAAAAAATGTGA--------TCTTG----GATATATCTCTCATAAAGAAAATGATT------------------------------TTTATAAAGGCCTATTAGATTCAAAACTTTCTTATGCATATCAGAGTCTGAAATAGACTCACAAAGACAATTGTTA-TCCACATCAAGCAACAACAAAAATGATAAATAGTCAAAGTGTCATTTG---------TTTTAGACTGTTCTGAAAGAAATAATGAGAGGTGAGAACCATGGGGTAT-
i mm10.chr8                C 0 C 0
s canFam3.chr16             17751576 227 -  59632846 TTTGGTCTTACTGCCAAAAGAATATGATGTTTAATATATCTCTCATAACAA-------ATAATAAGAAAAAGCTATTAAGCTCAAAAGTCTCTCACACACACTGGAGTTAGAA------------------------------ACAC-----------ACAGAATCACAAAGATGTTTGTTATTTCATATCAATCAACAATGACAGAAA-TAACAGTAAAACTGTCCTTAGCATACTTCTCACTGA--------------AATAATGTGAGGTAAGAAACCTGAACTATT
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190335007   0 - 190850796 C
e nomLeu3.chr7b            113602466   0 + 115148730 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=434692.000000
s hg38.chr4_KI270925v1_alt     23880 286 +    555799 ATCTATCCTTTGCTTACGTAATCCCTATGTGCCCTCCAGTGTCCGATATGCAAGTCTTTCCTCTG-CTGTAAAACACAGCTTGGCA----GCAAAATGTGCCATATATAACTGTAATCTTTAGTAATGATGAGGCACTCTGTAGATTCCAGCAGGTACTTTCATTACTCCCACAAGCTTTTAAGCACCCATTA-------TTTTTAGTCTTATATTCTCATGAATATCTTTTACATTTTACATCTAAGGAGAAATAAAAGAATAATAATTATATTTAATTATTTGAATAGCTTTTTAA
s panTro4.chr4             192721990 286 + 193495092 ATCTATCCTTTGCTTACGTAATCCCTATGTGCCCTGCAGTGTCCGATATGCAAGTCTTTCCTCTG-CTGTAAAACACAGCTTGGCA----GCAAAATGTGCCATATATAACTGTAATCTTTAGTAATGATGAGGCACTCTGTAGATTCCAGCAGGTACTTTCATTACTCCCACAAGCTTTTAAGCACCCATTA-------TTTTTAGTCTTATATTCTCATGAATATCTTTTACATTTTACATCTAAGGAGaaataaaataataataattatatttaattatttGAATAGCTTTTTAA
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183430238 281 + 184069350 ATCTATCCTTTGCTTACGTAATCCCTGCGTGCCCCACAGCGTCCAGCATGCAAATCTTTCCTCCG-CCGTGAAACACAGCTGGGCA----GCAAAGTGTGCCGTACATAGCTGTAATCTTCAGTAATGGTGAAGTGCTCTGTAGATTCCAGCAGGTAGTTTCATTACTCACAGAAGCTTTTAAGCACACGTTAT------TTTTTAGTCTTAAATTCTCATGAATATCTTTTACATTTTATATCTAAGGAGAAATAAAAGCATAATA-----ATTTAATTA-TTGAATAGCTTTTTAA
i rheMac3.chr5             I 46 C 0
s macFas5.chr5             188809990 281 + 189454096 ATCTATCCTTTGCTTACGTGATCCCTGCGTGCCCCACAGCGTCCAGCATGCAAATCTTTCCTCCG-CCGTGAAACACAGCTGGGCA----GCAAAGTGTGCCGTACATAGCTGTAATCTTCAGTAATGGTGAAGTGCTCTGTAGATTCCAGCAGGTAGTTTCATTACTCCCAGAAGCTTTTAAGCACACGTTAT------TTTTTAGTCTTAAATTCTCATGAATATCTTTTACATTTTATATCTAAGGAGAAATAAAAGCATAATA-----GTTTAATTA-TTGAATAGCTTTTTAA
i macFas5.chr5             I 46 C 0
s papAnu2.chr5             178237940 281 + 178775436 ATCTATCCTTTGCTTACGTGATCCCTGTGTGCCCCACAGCGTCCAGCATGCAAATCTTTCCTCCG-CTGTGAAACACAGCTGGGCA----GCAAAGTGTGCCGGTCATAGCTGTAATCTTCAGTAATGGTGAAGTGCTCTGTAGATTCCAGCAGGTAGTTTCATTACTCCCAGAAGCTTTTAAGCACACGTTAT------TTTTTAGTCTTAAATTCTCATGAatgtcttttacattttatatctaaggagaaataaaagcataata-----atttaatta-ttgaaTAGCTTTTTAA
i papAnu2.chr5             I 184 C 0
s chlSab2.chr7             135178228 286 + 135778131 ATCTATCCTTTGCTTACGTGATCCCTGTGTGCCCCACAGCGTCCAGTATGCAAATCTTTCCTCCG-CTGTGAAACACCGCTGGGCA----GCACAGTGTGCCGTACATAGCTGTAATCTTCAGTAATGGGGAAGTGCTCTGTAGATTCCCGCAGGTAGTTTCATTACTCCCAGAAGCTTTTAAGCACCTGTTGT------TTTTTAGTCTTAAATTCTCATGAATATCTTTTACATTTTATATCTAAGGAGAAATAAAAGCATAATAATTATATTTAATTA-TTGAATAGCTTTTTAA
i chlSab2.chr7             I 230 C 0
s mm10.chr8                 87428485 270 - 129401213 -------ATGTACTTGTGTGATCTCTTGGTACCCCACAGGGTTCAATGTAAAATTCCTCCCTCAG-CTGTAAC------CCTGGCATTTGGCAAAATGTCCCATATGTCTGTTATATATTTAGTAATGCTGAGACACTCGATGTGTTCC--------------TTCCTCCTACAGGCGCTTGGCCCTCCTTCCTGTGTTCCTTTTAGTCTTATATTATCAAGAATATCTTATGCATTTTACAGCTGAGATCAAATGAAAATGTACTAATTATACTTTATTATTTAAATAGCTTCAGGA
i mm10.chr8                C 0 C 0
s canFam3.chr16             17751803 260 -  59632846 ATATATTCTTTACTT--------CTCATGT-----ACAGAGTTCAACATGAAAGTCCTCTCCCTGTCTGTAAAACGCAGTTTGGCT----GTACATTGTAT--------ATTGTAATATTTAGTGACAGTG-GGCACTCAGAACATTCCAGCAGGTAGTTTCATTTTTCCTATAAGCTTCT-AGCACCCATTT-------TTTTCAACATTGTGCTCTAGGGAATATTTTATACCTTTTAGAGCTGAGGGGAGATAAAAGCATAACAATTATATTT-ATTA---GAATAGCTCCttta
i canFam3.chr16            C 0 I 441
e calJac3.chr3             190335007   0 - 190850796 C
e nomLeu3.chr7b            113602466   0 + 115148730 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=283767.000000
s hg38.chr4_KI270925v1_alt     24166 169 +    555799 TCACAAGTCTCTATGCTGGAATCTGAGGGATATTTAATGCAAAAGTCATACTTGCCCTCCATAGTCAGTTTCTTTCTGCAGTTACCTTATTGCAACATGCCCAGTAGTGATAAGTCCATTTTCCGTATATACACaagcatagaatctaattttcaaaaggccacctagg
s panTro4.chr4             192722276 169 + 193495092 TCACAAGTCTCTATGCTGGAATCTGAGGGATATTTAATGCAAAAGTCATACTTGCCCTCCATAGTCAGTTTCTTTCTGCAGTGACCTTATTGCAACATGCCCAGAAGTGATAAGTCCATTTTCCGTATATACACAAGCATAGAATCTAATTTTCAAAAGGCCACCTAGG
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183430519 169 + 184069350 TCACACGTATCTATGCTGGAATCTGAGGGATATTTAATGCAAAAGTCATACTTGCCCTCCATAGTCAATTTCTTTCTGCGGTGAGCTTATTGCAACATGCCCAGTAGTGATAAGTCCATTTTCCGTGTATACACaagcatagaatctaatttgcaaaaggccacctagg
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188810271 169 + 189454096 TCACACGTATCTATGCTGGAATCTGAGGGATATTTAATGCAAAAGTCATACTTGCCCTCCATAGTCAATTTCTTTCTGCGGTGAGCTTATTGCAACATGCCCAGTAGTGATAAGTCCATTTTCCGTGTATACACaagcatagaatctaatttgcaaaaggccacctagg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178238221 169 + 178775436 TCACACGTATCTATGCTGGAATCTGAGGGATATTTAATGCAAAAGTCATACTTGCCCTCCATAGTCAATTTCCTTCTGCGGTGAGCTTATTGCAACATGCCCAGTAGTGATAAGTCCATTTTCCGTGTAGACACAAGCATAGAATCTAATTTGCAAAAGGCCACCTAGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135178514 169 + 135778131 TCACAAGTATCTATGCTGGAATCTGAGGGATATTTAATGCAAAAGTCATACTTGCCCTCCATAGTCAATTTCTTTCTGCAGTGAGCTTATTGCAACATGCCCAGTAGCGATAAGTCCATTTTCCGTATATACACAAGCATAGAATCTAATTTTCCAAAGGCCACCTAGG
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87428755 130 - 129401213 TTTCAAGTATCT--------ATTGGAGAGTTACTTAAT--CAAAGCCACAGAAGCACTCTTCTGTCCATTTCTTTTTGAAGT----------------------------TAAGTTCATTTTCAGTTTATAGACAAGCCCGGAATCTTCTATTACAAAAGCCATCT-GG
i mm10.chr8                C 0 C 0
s canFam3.chr16             17752504 166 -  59632846 TCACAATTACCTACTATGGAGTTTGAGGGATACTTAATG-GAGACCTGAACATGCCTCCCATAGTCA-TTTACTTTTAGAGTTAATTTATTTCAATGTGCCTAATAGTGATAAACCCATTTTCAGTAGGTACAC-AGCATATAATCTAATATTTAAAAAATCACTTAAG
i canFam3.chr16            I 441 I 849
e calJac3.chr3             190335007   0 - 190850796 C
e nomLeu3.chr7b            113602466   0 + 115148730 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=273405.000000
s hg38.chr4_KI270925v1_alt     24335 207 +    555799 aacccagtctaaatcacaccagatacctacattgcttctc-tatt-ttgctgagagattgttatccaacatctgtttgcacactt-cagtgatagggagaacacttaaacacaatagtg----gtgatttattgttgagaaacactagttattagaatattctatcttatattgcattgaaatttgctttccctttaaccc-tatgggtcctggt
s panTro4.chr4             192722445 207 + 193495092 AACACAGTCTAAATCACACCAGATACCTACATTGCTTGTC-TGTT-TTGctgagagattgttatccaacatctgtttgcacactt-cagtgagagggagaacacttaaacacaatagtg----gtgatttattgttgagaaacactagttattagaatattctatcttatattgcattgaaatttgctttccctttaaccc-tatgggtcctggt
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183430688 207 + 184069350 aacacagtctgaatcacaccagatacatacattgcttctc-tttt-ttgttaagagattgttgtccagcatctgtttgcacaattccagtgatgaggagaacacgtaaaca-aatagtg----gtgatttgatattgagaaacacttgttattagaatattctattttatattgcactgaaatttgctttccctttaaccc-tattagtcctggt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188810440 207 + 189454096 aacacagtctgaatcacaccagatacatacattgcttctc-tttt-ttgctaagagattgttgtccagcatctgtttgcacaattccagtgatgaggagaacacgtaaaca-aatagtg----gtgatttgatattgagaaacacttgttattagaatattctattttatattgcactgaaatttgctttccctttaaccc-tattagtcctggt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178238390 208 + 178775436 AACACAGTCTGAATCACACCAGATACATacattgcttctcttttt-ttgctgAGAGATTGTTGTCCAGCATCTGTTTGCACAATTCCAGTGATGAGGAGAACACGTAAACA-AATAGTG----GTGATTTGATACTGAGAAACACTTGTTATTAGAATATTCTATCTTATATTGCACTGAAATTTGCTTTCCCTTTAACCC-TATTAGTCTTGGT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135178683 207 + 135778131 AACACAGTCTGAATCACACCAGATACATACATTGCTTCTC-TTTT-TTGctgagagattgttgttcagcatctgtttgcacaattccagtgatggggagaacacgtaaaca-gatagtg----gtgatttgttattgagaaacactagttattagaatattctatcttatattgcattgaaatttgctttccctttaatcc-tattagtcctggt
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87428885 208 - 129401213 ATAACACTTTTGATCACAACTGTTATATAAATTGCTTCTC-TCCCATCCCTAAGAGAAGTTTAGTTAA---CCACTTGTACATATGACATGCTGAGGGGATGCTTTAAAAA-AATAACACAGCCAGATTTGTTGCTGAGAAACTCCTGTTCCTAGGAGAGTCTACCTTGTGCTGAGATAAAAGGTACTT--CCTTTATCCTGTGCTGGTCCTAGT
i mm10.chr8                C 0 I 841
e canFam3.chr16             17752670 849 -  59632846 I
e calJac3.chr3             190335007   0 - 190850796 C
e nomLeu3.chr7b            113602466   0 + 115148730 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=750701.000000
s hg38.chr4_KI270925v1_alt     24542 609 +    555799  
s panTro4.chr4             192722652 608 + 193495092  
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183430895 607 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188810647 607 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178238598 607 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135178890 610 + 135778131  
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87429093 841 - 129401213 I
e canFam3.chr16             17752670 849 -  59632846 I
e calJac3.chr3             190335007   0 - 190850796 C
e nomLeu3.chr7b            113602466   0 + 115148730 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=584919.000000
s hg38.chr4_KI270925v1_alt     25151 401 +    555799 tttcacaggatgttatgaagatcaaatgctataat--ctgtaggacactctaa--------aat-------ttgtcagttctaaagcattgtacaatagtagtcgttattTCCAGTTATCTTTCATCTCTCAATTATAATGGTCAACCTAAATGAAGACAAAACTACGAGTATT--TCATTCACAAGCTAAGTGTAACATCCCAAACCACTAGATACGCTGCACTTTCTATTT---------TTGGAAATGTATACT-ACGACTTACAATCAAGCATTAGTTCTGAAGTGACCTTTACAAGAATTTTTATCCTTAACATATGTTAATTCTCT---------ATGTAAACTATTATGAAAATGAAC----CAGAATTGAACATTTAAAATAAACTTTTTGTGGAGCAACCAACAATTCCTAAATATTCAATATGACAATTGTAG
s panTro4.chr4             192723260 401 + 193495092 tttcacaggatgttatgaagatcaaatgctgtaat--ctgcaggacactctaa--------aat-------ttgtcagttctaaagcattgtacagtagtagttgttattTCCAATTATCTTTCATCTCTCAATTATAATGGTCAACCTAAATGAAGACAAAACTACGAGTATT--TCATTCACAAGCTAAGTGTAACATCCCAAACCACTAGATACGCTGCACTTTCTATTT---------TTGGAAATGTATACT-ACGACTTACAATCAAGCATTACTTCTGAAGTGACCTTTACAAGAATTTTTATCCTTAACATATGTTAATTCTCT---------ACATAAACTATTATGAAAATGAAC----CAGAATTGAACATTTAAAATAAACTTTTTGTGGAGCAACCAACAATTCCTAAATATTCAATATGACAATTGTAG
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183431502 402 + 184069350 tttcacaggacgttatgaagatcaaacactataat--ctgcaggacactttaa--------aat-------ttgtcagtgctaaagcattgtacaatagtagttgttattTCTAATTATCTTTCATCTCTCAATTACAATGGTCAACCTAACTGAAGACAAAACTGAGAGTATT--ACACTCACAAGCTAAGTATAACAACCCAAACCACTAGATATGCTACACTTTCTATTT---------TTAGAAATGTCTGCTAATGACTTACAATCAAGCATTAATTCTGAAATAACCTTTACAAGAATTTTTATCCTTAACATATATTGATTCTCT---------ATGTAAACTATTATGAAAATGAGC----CAGAATTGAACATTTAAAATAAAGTTTTTGTGGAGCCACCAACAATTCCTAAATATTCAATATGACAATTGTAG
i rheMac3.chr5             C 0 I 172
s macFas5.chr5             188811254 402 + 189454096 TTTCACAGGACGTTATGAAGATCAAACACTATAAT--CTGCAGGACACTTTAA--------AAT-------TTGTCAGTGCTAAAGCATTGTACAATAGTAGTTGTTATTTCTAATTATCTTTCATCTCTCAATTACAATGGTCAACCTAACTGAAGACAAAACTGAGAGTATT--ACACTCACAAGCTAAGTATAACAACCCAAACTACTAGATATGCTACACTTTCTATTT---------TTAGAAATGTCTGCTAATGACTTACAATCAAGCATTAATTCTGAAATAACCTTTACAAGAATTTTTATCCTTAACATATATTGATTCTCT---------ATGTAAACTATTATGAAAATGAGC----CAGAATTGAACATTTAAAATAAAGTTTTTGTGGAGCCACCAACAATTCCTAAATATTCAATATGACAATTGTAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178239205 402 + 178775436 TTTCACAGGATGTTATGAAGATCAAACACTATAAT--CTGCAGGACACTCTAA--------AAT-------TTGTCAGTGCTAAAGCATTGTACAATAGTAGTTGTTATTTCTAATTATCTTTCATCTCTCAATTACAATGGTCAACCTAACTGAAGACAAAACTGAGAGTATT--ACACTCACAAGCTAAGTATAACAACCCAAACTACTAGATATGCTAcactttctattt---------ttagaaatgtctGCTAATGACTTACAATCAAGCATTAATTCTGAAATAACCTTTACAAGAATTTTTATCCTTAACATATATTGATTCTCT---------ATGTAAACTATTATGAAAATGAGC----CagaattgaacatttaaaataaactttttgtgGAGCCACCAACAATTCCTAAATATTCAATATGACAATTGTAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135179500 402 + 135778131 TTTCACAGGATGTTATGAAGATCAAACACTATAAT--CTGCAGGACATTCTAA--------AAT-------TTGTCAATGCTAAAGCATTGTGTAATAGTAGTTGTTATTTCTAATTATCTTTCATCGCTCAATTATAATGGTCAACCTAACTGAAGACAAAACTAAGAGTATT--ACACTCACAAGCTAAGTATAACAACCCAAACTACTAGATATGCTACACTTTCTATTT---------TTAGAAATGTCTGCTAATGACTTACAATCAAGCATTAGTTCTGAAATAACCTTTACAAGAATTTTTATCCTTAACATATATTGGTTCTCT---------ATGTAAACTATTATGAAAATGAGC----CAGAATTGAATATTTAAAATAAACTTTTTGTGGAGCCACCAACAGTTCCTAAATATTCAATATGACAATTGTAG
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17753519 431 -  59632846 ttttacaggatg--aaagagattaaaagtagtgattgttacaagacattctgactgtacctaataccactaaTGCCAATTCTAAGGCACTATACAATAGTA---GTTAATTCTAATTATGCTTGGTCTTTTAATAATAATGGTCAGCTTACAGTATGACaatataaaaaatttttaaaaataaaaaataaaGTATGACAA-------TATTAAACTTATTTCACTTATGAACTAAGCACAGCATAACAATGAGTGCTAGTGACTTATAAACAGGAATTAGTTCTAAAATAACCACTGGAAAATATTTTATCCATAACATCTATTAATTTTATACATAAAACACATAAAATACATTGTAAATGAGCCAGGCAGAAGTGAATATTCTAAATAAAATTGTCATGGAGCAACAAACAATTCCTGACTATTCGATATGAAAACTGTAG
i canFam3.chr16            I 849 C 0
e mm10.chr8                 87429093 841 - 129401213 I
e calJac3.chr3             190335007   0 - 190850796 C
e nomLeu3.chr7b            113602466   0 + 115148730 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=31625.000000
s hg38.chr4_KI270925v1_alt     25552 34 +    555799 TGCAAAAACAAATGCTATTATATTGAGGAATGCA
s panTro4.chr4             192723661 34 + 193495092 TGCAAAAACAAATGCTATTATATTGAGGAATGCA
i panTro4.chr4             C 0 C 0
s macFas5.chr5             188811656 34 + 189454096 AGCGAAAATGAATGCTATTATATCAAGGAATGCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178239607 34 + 178775436 AGCGAAAATGAATGCTATTATATCAAGGAAcgca
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135179902 34 + 135778131 AGTAAAAATGAATGCTATTATATCAAGGAGCGCA
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17753950 34 -  59632846 AACAAAATCAAATGTTATTCTTTTGAGGAATCAA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87429093 841 - 129401213 I
e calJac3.chr3             190335007  0 - 190850796 C
e rheMac3.chr5             183431904 172 + 184069350 I
e nomLeu3.chr7b            113602466  0 + 115148730 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=298429.000000
s hg38.chr4_KI270925v1_alt     25586 214 +    555799 TATTATTATTTTGAATATCTACTCAAGAACTTTATGATTTTCAATAGTAAGCATGGCACTTTGTGTCTCTTTCCTTGGAGCTTATGAGTCTCGCCAAAGCCCATTGACATGGGGCTAACCCAGGGGCCACTAAATCATGTCATTATGTAACTGTTAGCCTACAACTAGCGGTCATCTTTA-------------AAAAAAAAAT------------------------------------------GGCAAGTAGAATTTTATCACGGTA
s panTro4.chr4             192723695 215 + 193495092 TATTATTATTTTGAATATCTACTCAAGAACTTTATGATTTTCAACAGTAAGCATGACACTTTGTGTCTCTTTCCTTGGAGCTTATGAGTCTCGCCAAAGCCCATTGACATGGAGCTAATCCAGGGGCCGCTAAATCATGTCATTATGTAACTGTTAGCCTACAACTAGCGGTCATCTTTT------------TAAAAAAAAAT------------------------------------------GGCAAGTAGAATTTTATCACGGTA
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183432076 230 + 184069350 TATCATTATTTTGAGT-TCTACACAAGAACTTTATGATTTTCAACAGTAAGCATGGTACTTTGTGTCTCTTTCCTTGGAGTTTATGAGTCTCGCCAAAGCCCATTGACATGAAACTAATCCAGGGGCCACTAAGTCATGTCATTATGTAACTGTTAGCCCACAACTAGTGGTCATCTTaaaaaaaaaaaaaaaaaaaaaaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------------------------------------
i rheMac3.chr5             I 172 C 0
s macFas5.chr5             188811690 241 + 189454096 TATCATTATTTTGAGTGTCTACTCAAGAACTTTATGATTTTCAACAGTAAGCATGGTACTTTGTGTCTCTTTCCTTGGAGTTTATGAGTCTCGCCAAAGCCCATTGACATGAAACTAATCCAGGGGCCACTAAGTCATGTCATTATGTAACTGTTAGCCCACAACTAGCGGTCATCTTaaaaaaaaaaaaaaaaaaaaaaaaa----------------------------aaaaaaaaaaaaaaaGCACATAGAATCTTATCACAGTA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178239641 226 + 178775436 tattattattttgagtgtCTACTCAAGAACTTTATGATTTTCAACAGTAAGCAGGATACTTTGTGTCTCTTTCCTTGGAGTTTATGAGTCTCGCCAAAGCCCATTGACATGAAACTAATCCAGGGGCCACTAAATCATGTTATTATGTAACTGTTAGCCCAC-ACTAGCggtcatcttaaaaaaaaaaaaaaaaaaaaaaaaa------------------------------------------agcacatagaaTCTTATCACagta
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135179936 227 + 135778131 TATTATTATTTTGAGTGTCTACTCAAGAACTTTATGATTTTCAACAGTAAGCATGGTACTTTGTGTCTCTTTCCTTGGAGTTTATGAGTCTCGCCAAAGCCCACTGACATGAAACTAATCCAGGGGCCACTAAATCATGTCATTATGTAACTGTTAGCCCACAACTAGCAGTCATCTTaaaaaaaaaaaaaaaaaaaaaaaaa------------------------------------------GACACATAGAATTTTATCACAGTA
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17753984 209 -  59632846 TGTTGTTACCATGAGTGTCTATTCAAGAACTTTATGATTTTCAACATTAAGCATGTCATTGTGCATCTCTTGCCTTGAAGCTGAATAAGC-AACCACAGCCCACTGGCACTGGAATAACCCAGAGACCACTAAATCGTGTCATTATGTGACTTTTATCCCACAACTGAGGGTCATCTCAA-----------------AGAGCA------------------------------------------AGCAAGTAAAATTTTACCATAACA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87429093 841 - 129401213 I
e calJac3.chr3             190335007   0 - 190850796 C
e nomLeu3.chr7b            113602466   0 + 115148730 C
e ponAbe2.chr4             197824048 3694 + 198332218 I

a score=1798068.000000
s hg38.chr4_KI270925v1_alt     25800 965 +    555799  
s panTro4.chr4             192723910 969 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197827742 970 + 198332218  
i ponAbe2.chr4             I 3694 C 0
s rheMac3.chr5             183432306 977 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188811931 973 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178239867 972 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135180163 999 + 135778131  
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17754193 979 -  59632846  
i canFam3.chr16            C 0 I 3340
e mm10.chr8                 87429093 841 - 129401213 I
e calJac3.chr3             190335007   0 - 190850796 C
e nomLeu3.chr7b            113602466   0 + 115148730 C

a score=1016693.000000
s hg38.chr4_KI270925v1_alt     26765 663 +    555799  
s panTro4.chr4             192724879 743 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197828712 741 + 198332218  
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183433283 583 + 184069350  
i rheMac3.chr5             C 0 I 305
s macFas5.chr5             188812904 662 + 189454096  
i macFas5.chr5             C 0 I 308
s papAnu2.chr5             178240839 583 + 178775436  
i papAnu2.chr5             C 0 I 305
s chlSab2.chr7             135181162 586 + 135778131  
i chlSab2.chr7             C 0 I 308
e mm10.chr8                 87429093 841 - 129401213 I
e canFam3.chr16             17755172 3340 -  59632846 I
e calJac3.chr3             190335007   0 - 190850796 C
e nomLeu3.chr7b            113602466   0 + 115148730 C

a score=224932.000000
s hg38.chr4_KI270925v1_alt     27428 135 +    555799 aaaaaAtgtcttagtccattttgtgttgctactacagaatacctgagactagataacttataaagaaccgtgatttttttttctcacagtcctggaagcttggaagtctcagatcaaggcgccagcaggtttaga
s panTro4.chr4             192725622 131 + 193495092 aaa---tgtcttagtccattttgtgttgctactacagaatacctgagactagataacttataaagaaccgcgatttttttt-ctcacagtcctggaagcttggaagtctcagatcaaggcgccagcaggtttaga
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197829453 134 + 198332218 aaaaaAtgtcttagtccattttgtgttgctacaacagaatacctgagactagataacttataaagaaccgcaatttttttt-ctcacagtcctggaagcttggaagtctcagatcaaggcgccagcaggtttaga
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183434171 133 + 184069350 aaaaaaagtcttagtccattttgtgttgctataagagaatacctgagactagataacttataaagaactgcaattttttt--ctcacagtcatggaatcttggaagtctgagatcaaggcaccagcaggttcagt
i rheMac3.chr5             I 305 C 0
s macFas5.chr5             188813874 133 + 189454096 aaaaaaagtcttagtccattttgtgttgctataagagaatacctgagactagataacttataaagaactgcaattttttt--ctcacagtcatggaatcttggaagtctgagatcaaggcaccagcaggttcagt
i macFas5.chr5             I 308 C 0
s papAnu2.chr5             178241727 133 + 178775436 aaaaaaagtcttagtccattttgtgttgctataagagaatacctgagactagataacttataaagaactgcaattttttt--ctcacagtcaTGGAATcttggaagtctgagatcaaggcaccagcaggttcaGT
i papAnu2.chr5             I 305 C 0
s chlSab2.chr7             135182056 133 + 135778131 aaaaaaGgtcttagtccattttgtgttgctataagagaatacctgagactagataacttataaagaactgcaattttttt--ctcacagtcatggaatcttggaagtctgagaacaagacaccagcaggttcagt
i chlSab2.chr7             I 308 C 0
e mm10.chr8                 87429093 841 - 129401213 I
e canFam3.chr16             17755172 3340 -  59632846 I
e calJac3.chr3             190335007   0 - 190850796 C
e nomLeu3.chr7b            113602466   0 + 115148730 C

a score=1976204.000000
s hg38.chr4_KI270925v1_alt     27563 862 +    555799  
s panTro4.chr4             192725753 864 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197829587 867 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113602466 855 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183434304 874 + 184069350  
i rheMac3.chr5             C 0 I 6
s macFas5.chr5             188814007 873 + 189454096  
i macFas5.chr5             C 0 I 6
s papAnu2.chr5             178241860 862 + 178775436  
i papAnu2.chr5             C 0 I 261
s chlSab2.chr7             135182189 872 + 135778131  
i chlSab2.chr7             C 0 I 6
e mm10.chr8                 87429093 841 - 129401213 I
e canFam3.chr16             17755172 3340 -  59632846 I
e calJac3.chr3             190335007   0 - 190850796 C

a score=37422.000000
s hg38.chr4_KI270925v1_alt     28425 23 +    555799 GACAGATA------GTCAgatgagtgggt
s panTro4.chr4             192726617 29 + 193495092 GACAGATatagatagacagatgagtgggt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197830454 29 + 198332218 GACAGATatagatagacagatgagtgggt
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113603321 25 + 115148730 GACACATA----TAGATAGATGAGCGGGT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183435184 23 + 184069350 tatagata------gacagatgagtggat
i rheMac3.chr5             I 6 I 82
s macFas5.chr5             188814886 23 + 189454096 Tatagata------gacagatgagtggat
i macFas5.chr5             I 6 C 0
s papAnu2.chr5             178242983 23 + 178775436 gatagata------gatagatagatggat
i papAnu2.chr5             I 261 C 0
s chlSab2.chr7             135183067 23 + 135778131 Tatagata------gacagatgagtggat
i chlSab2.chr7             I 6 C 0
e mm10.chr8                 87429093 841 - 129401213 I
e canFam3.chr16             17755172 3340 -  59632846 I
e calJac3.chr3             190335007  0 - 190850796 C

a score=34666.000000
s hg38.chr4_KI270925v1_alt     28448 26 +    555799 gagtgggtggatggatggatgggaga
s panTro4.chr4             192726646 26 + 193495092 gagtgggtggatggatggatgggagg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197830483 26 + 198332218 gagtgggtggatggatcgatgggaga
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113603346 21 + 115148730 GAGTGGGTGGAT-----GATGGGAGA
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188814909 26 + 189454096 gagtgggtggatggctggatgggaga
i macFas5.chr5             C 0 I 51
s papAnu2.chr5             178243006 26 + 178775436 agatagatggatagatagatggatag
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135183090 26 + 135778131 gagtgggtggatagatggatgggaga
i chlSab2.chr7             C 0 I 53
e mm10.chr8                 87429093 841 - 129401213 I
e canFam3.chr16             17755172 3340 -  59632846 I
e calJac3.chr3             190335007  0 - 190850796 C
e rheMac3.chr5             183435207 82 + 184069350 I

a score=1160775.000000
s hg38.chr4_KI270925v1_alt     28474 503 +    555799  
s panTro4.chr4             192726672 548 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197830509 527 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113603367 517 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183435289 503 + 184069350  
i rheMac3.chr5             I 82 C 0
s macFas5.chr5             188814986 503 + 189454096  
i macFas5.chr5             I 51 C 0
s papAnu2.chr5             178243032 498 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135183169 503 + 135778131  
i chlSab2.chr7             I 53 C 0
e mm10.chr8                 87429093 841 - 129401213 I
e canFam3.chr16             17755172 3340 -  59632846 I
e calJac3.chr3             190335007   0 - 190850796 C

a score=130782.000000
s hg38.chr4_KI270925v1_alt     28977 47 +    555799 ACTTACCACCCTGTTTGAGTCACTACTTGATAGTCTCTCCTTCTCTC
s panTro4.chr4             192727220 47 + 193495092 ACTTACCACCCTGTTTGAGTCACTACTTGATGGTCTCTCCTTCTCTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197831036 45 + 198332218 acttactaccctgtttgagtcactacttgatagtctctccttctc--
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113603884 47 + 115148730 ACTTACCACCCTGTTTGAGtcagtatttgatagtctctccttcactc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183435792 47 + 184069350 ACTTACCACCCTGCTTGAGTCACTGCTTGATAGTCTCTCCTTCTCTA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188815489 47 + 189454096 ACTGACCACCCTGCTTGAGTCACTGCTTGATAGTCTCTCCTTCTCTA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178243530 47 + 178775436 ACTTACCACCCTGCTTGAGTCACTGCTTGATAGTCTCTCCTTctcta
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135183672 47 + 135778131 ACTTACCACCCTGCTTGAGTCACTGCTTGATAGtctgtccttctcta
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190335007 47 - 190850796 ACTTGCCACCCTGTTTGAATCTCCACTTGATAGTCTCTGCTTCTCTC
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87429093 841 - 129401213 I
e canFam3.chr16             17755172 3340 -  59632846 I

a score=620574.000000
s hg38.chr4_KI270925v1_alt     29024 219 +    555799 TCTT----tttatt--tttttt-cagtctttccccccttctatcaagagcaaatattaggtctatgaaagcaggatttagtatctcttgctcatcagcttgaaatatgccgga---aac--acaggagacaatcaa--aa-------------------------------------------------------tatttgttaaTTACTTATAGACAAGGTCAA---ATCAGTGGAATTTACTTTGATGCCCATCCAATCTTCCTTTACATCTTCTAGCCCTTGCTCGGG
s panTro4.chr4             192727267 222 + 193495092 TCTT----tttatt--tttttttcagtctttccccacttctatcaagagcaaatattaggtctatgaaagcaggatttaatatctcttgttcatcagcttgaaatatgccgga---aac--acaggagacaatcaataaa-------------------------------------------------------tatttgttaaTTACTTATAGACAAGGTCAA---ATCAGTGGAATTTACTTTGATGCCCATCCAATCTTCCTTTACATCTTCTAGCCCTTGCTCGGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197831081 215 + 198332218 ----------tatt--tttttt-cagtctttccccacttctatcaagaacaaatatgaggtctatgaaagcaggatttaatatctcttgttcatcaacttgaaatatgcctga---aac--acaggggacaatcaataaa-------------------------------------------------------tatttgttaaTTACTTATAGACAAAGTCTA---ATCAGTGGAATTTACTTTGAGGCCCATCCAATCTTCCTTTACATCTTCTAGCCCTTGCTTGGG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113603931 221 + 115148730 tctc----tttatt--tttttt-cactctttccccacttctatcaagaacaaatattaggtctatgaaagcaggatttaatatctcttgttcatcagcttgaaatatgcctga---aac--acaggagacaatcaataaa-------------------------------------------------------tatttgttaaTTACTTATAGACAAGGTCAA---ATCAGTGGGATTTACTTTGATGCCCATTCAATCTTCCTTTACATCTTCTAGCCCTTGCTCGGG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183435839 280 + 184069350 TCtt--tatttatttatttttt-tactttttccccacttttaccaagaacaaatattagatctatgaaagcaggacttaatttctgtcgtttatcagcttgagatatgcctga---aac--acaggagacaatcaataaatatttgtcgTTTATCAGCTTGAGATATGCCTGAAACGCAGGAGACAATCAATAAGTATTTGTCAATTACTTATGGACAAGGTCAA---ATCAGTGGAATTTACTCTGATGCCCATCCAATCTTCCTTTACATCTTCTAGCCCTTGTTCGGG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188815536 225 + 189454096 TCtt--tatttatttatttttt-tactttttccccacttttaccaagaacaaatattagatctatgaaagcaggacttaatttctgtcgtttatcagcttgagatatgcctga---aac--acaggagacaatcaataaa-------------------------------------------------------tatttgtCAATTACTTATAGACAAGGTCAA---ATCAGTGGAATTTACTTTGATGCCCATCCAATCTTCCTTTACATCTTCTAGCCCTTGTTCGGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178243577 225 + 178775436 tctt--tatttatttatttttt-tactttttccccaCTTTTACCAAGAACAAATATTAGATCTATGAAAGCAGGACTTAATTTCTGTCGTTTATCAGCTTGAGATATGCCTGA---AAC--ACAGGagacaatcaataaa-------------------------------------------------------tatttgtcaattacTTATAGACAAGGTCAA---ATCAGTGGAATTTACTTTGATGCCCATCCAATCTTCCTTTACATCTTCTAGCCCTTGTTCGGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135183719 217 + 135778131 tctt--tatttatttatctttt-tactttttctccactttcaccaagagcaaatattagatctatgatagtaggacttaatttctgtcgttcatcagcttgaaatatgcctga---aac--acaggagacaatcaataaa-------------------------------------------------------tatttgttaaTTACTTATAGACAAGGTCAA---ATCAGTGGAATTTACTTTGATGCCCATCCAATCTTCCTTAACAGGG--------ATGTTCGGG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190335054 204 - 190850796 TCTA----TTTAAT-----CTT-CACTCTTTCTCCCCTTCTACCAAGAACAAACATTAGGTCTATGAAAGCAGGGTTTAATCTCTTTTATTCATCAGCTTGAAATGTGCCCAAAACAAC--ACAGGGGACAATCAAT----------------------------------------------------------AATTTGTTAATTACTT----ACAAAGTCAA---GTCAGTGGAATTTTTTTTGATGCTCATCCA----------ACATCTTCTAGCCCTTGCTGGGG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17758512 220 -  59632846 ttttcatatatattttaatttt-tactgtctccctact---accaagaacaaatattag-tccataaaagcagagc------tctcttgttcactagctagaaccgttcctga---aacatacaataaactatcaataaa-------------------------------------------------------tatttgctgaatACAAACAGATAAAATCAAGACATCAGTGGAATTTACTTTAGTGACCGCCCAATCTTCCTTTAGATCTAGT--TCCTTGCTCTGG
i canFam3.chr16            I 3340 C 0
e mm10.chr8                 87429093 841 - 129401213 I

a score=121584.000000
s hg38.chr4_KI270925v1_alt     29243 33 +    555799 ATCATTAGAACCGTCACCAAGAGATAACCAATA
s panTro4.chr4             192727489 33 + 193495092 ATCATTAGAACTGTCACCAAGAGATAACCAATA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197831296 33 + 198332218 ATCATTAGAACCGTCACCAAGAGATAACCAATA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113604152 33 + 115148730 ATCATTAGAACCGTCAACAAGAGATAACCAATA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183436119 33 + 184069350 ATCATTAGAACCCTCACCAAGAGATAACCAATA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188815761 33 + 189454096 ATCATTAGAACCCTCACCAAGAGATAACCAGTA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178243802 33 + 178775436 ATCATTAGAACCCTCACCAAGAGATAACCAATA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135183936 33 + 135778131 ATCATTAGAACCCTCACCAAGAGATAACCAATA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190335258 33 - 190850796 ATCATTAGAATCCGCACTAAGAGGTAACCAATA
i calJac3.chr3             C 0 I 523
s mm10.chr8                 87429934 30 - 129401213 ATCATTGAAACTGTATCTGAGAGAGAAATA---
i mm10.chr8                I 841 I 1
s canFam3.chr16             17758732 33 -  59632846 ATCATCATAATCTTCACTAGGATATAACCAATA
i canFam3.chr16            C 0 C 0

a score=33186.000000
s hg38.chr4_KI270925v1_alt     29276 12 +    555799 TTATTGTGAGGT
s panTro4.chr4             192727522 12 + 193495092 TTATTGTGAGGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197831329 12 + 198332218 TTATTGTGAGGT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113604185 12 + 115148730 TTATTGTGAGGT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183436152 12 + 184069350 TTATTGTGAGGT
i rheMac3.chr5             C 0 I 740
s macFas5.chr5             188815794 12 + 189454096 TTATTGTGAGGT
i macFas5.chr5             C 0 I 740
s papAnu2.chr5             178243835 12 + 178775436 TTATTGTGAGGT
i papAnu2.chr5             C 0 I 740
s chlSab2.chr7             135183969 12 + 135778131 TTATTGTGAGGT
i chlSab2.chr7             C 0 I 738
s mm10.chr8                 87429965  2 - 129401213 TT----------
i mm10.chr8                I 1 C 0
s canFam3.chr16             17758765 12 -  59632846 TTATTTTAAGGT
i canFam3.chr16            C 0 I 570
e calJac3.chr3             190335291 523 - 190850796 I

a score=5104.000000
s hg38.chr4_KI270925v1_alt     29288 2 +    555799 GC
s panTro4.chr4             192727534 2 + 193495092 GC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197831341 2 + 198332218 GC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113604197 2 + 115148730 GC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183436904 2 + 184069350 GC
i rheMac3.chr5             I 740 C 0
s macFas5.chr5             188816546 2 + 189454096 GC
i macFas5.chr5             I 740 C 0
s papAnu2.chr5             178244587 2 + 178775436 GC
i papAnu2.chr5             I 740 C 0
s chlSab2.chr7             135184719 2 + 135778131 GC
i chlSab2.chr7             I 738 C 0
s canFam3.chr16             17759347 2 -  59632846 AT
i canFam3.chr16            I 570 C 0
e mm10.chr8                 87429967 0 - 129401213 C
e calJac3.chr3             190335291 523 - 190850796 I

a score=142171.000000
s hg38.chr4_KI270925v1_alt     29290 44 +    555799 ATTCAATTTCTTCACTTAGAAACAGCCTTGCTCCCCTCCTCTTA
s panTro4.chr4             192727536 44 + 193495092 ATTCAATTTCTTCACTTAGAAACAGCCTTGCTCCCCTCCTCTTA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197831343 44 + 198332218 ATTCAATTTATTCACTTAGAAACAGCCTTGCTCCCCTCCTCTTA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113604199 44 + 115148730 ATTCAATTTCTTCACTTAGAAACAGCCTTGCTCCCCTCCTCTTA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183436906 43 + 184069350 ATTCAGTTTCTTCAC-TGGAAACAGCCTTGCTCCCCTTTTCTAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188816548 43 + 189454096 ATTCAGTTTCTTCAC-TGGAAACAGCCTTGCTCCCCTTTTCTAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178244589 43 + 178775436 ATTCAGTTTCTTCAC-TGGAAACACCCTTGCTCCCCTTCTCTAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135184721 43 + 135778131 ATTCAATTTCTTCAC-TGGAAACAGCCTTGCTCCCCTCCTCTAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190335814 44 - 190850796 ATTCAATTTCTTCACGTAGAAACAGCCTCGCTCCACTCCTCTTT
i calJac3.chr3             I 523 I 923
s mm10.chr8                 87429967 34 - 129401213 -----GTTTCTTGAAATTGAAGCAGCTTTCCTCTCCTTA-----
i mm10.chr8                C 0 C 0
s canFam3.chr16             17759349 43 -  59632846 ATTCAATTTTTTCACTTAGAAGCAGTCTTATTCC-CTCTTCTTA
i canFam3.chr16            C 0 C 0

a score=2232260.000000
s hg38.chr4_KI270925v1_alt     29334 713 +    555799  
s panTro4.chr4             192727580 713 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197831387 713 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113604243 705 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183436949 720 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188816591 720 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178244632 719 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135184764 719 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190336781 674 - 190850796  
i calJac3.chr3             I 923 C 0
s mm10.chr8                 87430001 722 - 129401213  
i mm10.chr8                C 0 I 212
s canFam3.chr16             17759392 938 -  59632846  
i canFam3.chr16            C 0 C 0

a score=192355.000000
s hg38.chr4_KI270925v1_alt     30047 62 +    555799 ACCATATACAACATGAAATACATTGAGAACACAGTAACTGTGGCCCTT--TATATAGATACCAT
s panTro4.chr4             192728293 62 + 193495092 ACCATATACAACATGAAATACATTGAGAACACAGTAACTGTGGCCCTT--TATATAGATACCAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197832100 62 + 198332218 ACCACATACAACATGAAATACATTGAGAACACAGTAACTGTGGCCCTT--TATATAGATACCAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113604948 62 + 115148730 ACCATATACAACGTGAAATACATTGAGAACACAATAACTGTGGCCCTT--TATATAGATACCAT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183437669 61 + 184069350 ACTACATACAATATAAAATACATTGAGAACACAATAA-TGTGGCCCTT--TAGATAGATACCAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188817311 61 + 189454096 ACCACATACAATATAAAATACATTGAGAACACAATAA-TGTGGCCCTT--TAGATAGATACCAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178245351 61 + 178775436 ACCACacacaatataaaatacattgaGAACACAATAA-TGTGGCCCTT--TAGATAGATACCAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135185483 61 + 135778131 ACCACATACAATATAAAATACATTGAGAACACAATAA-TGTGGCCCTT--TAGATAGACACCAT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190337455 62 - 190850796 ACCACATACAACATAAAATACATTCAGTACACAGTAACGGTGGCCCTT--TAGGTAGATACCAT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17760330 63 -  59632846 ACCACATACACTACAAAATAAAATGAGAACACAG-AACAACAGCTCTTACTCTATGGATAAtat
i canFam3.chr16            C 0 I 495
e mm10.chr8                 87430723 212 - 129401213 I

a score=11788.000000
s hg38.chr4_KI270925v1_alt     30109 4 +    555799 Atgt
s panTro4.chr4             192728355 4 + 193495092 Atgt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197832162 4 + 198332218 ATGt
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113605010 4 + 115148730 Atgt
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183437730 4 + 184069350 Atgt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188817372 4 + 189454096 Atgt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178245412 4 + 178775436 ATGT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135185544 4 + 135778131 Atgt
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190337517 4 - 190850796 AGGT
i calJac3.chr3             C 0 I 7
e mm10.chr8                 87430723 212 - 129401213 I
e canFam3.chr16             17760393 495 -  59632846 I

a score=1157313.000000
s hg38.chr4_KI270925v1_alt     30113 482 +    555799 caagcgcgtccgtgtgaagagaccaccaaaacaggctttgtgtgagtaacaaggatgtttattcacttgggtgcaaatgggctgagtccaaacagagagtcagcgacgggagatggggaaggggttgctttataggagttgggtaggtaatggaaaattacagtaaaaggtggttatctattgttagcagaggagggggttacaaggtacatagtggggagatcataagactcattgtccagaagaggaatgtcacaaagtcgattgatcagctaaggtagggcagggacaagtcaaaatggtaaaatgttgtaattttggttaatcaggtaaggcaggaactggctgttttacttctttg-gggtt---ttttcgctgctccagacttcttggctcctgcaggccacctggatgtgtatgtgcaggtcaca-ggggt--tataatggctgagctttggctcagaggcctgacaCCATAGGTATACGAC
s panTro4.chr4             192728359 482 + 193495092 caagcgcgtccgtgtgaagagaccaccaaaacaggctttgtgtgagtaacaaggatgtttattcacttgggtgcaagtgggctgagtccaaacagagagtcagcgacgggagatggggaaggggttgctttataggaattgggtaggtaatggaaaattacagtaaaaggtggttatctattgttagcagaggagggggttacaaggtacatagtggggagatcataagactcattgtccagaagaagaatgtcacaaagtcgattgatcaggtaaggtagggcagggacaagtcacaatggtaaaatgttgtaattttggttaatcaggtaaggcaggaactggctgttttacttctttg-gggtt---ttttcgctgctccagacttcttggctcctgcaggccacctggatgtgtatgtgcaggtcaca-ggggt--tataatggctgagctttggctcagaggcctgacaCCATAGGTATACGAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197832166 483 + 198332218 caagcgcgtctgtgtgaagagaccaccaaaacaggctttgtgtgagtaacaaggatgtttattcacttgggtgcaagtgggctgagtccgaacagagagtcagcgaagggagatgcagaaggggttgctttataggagttgggtaggtaatggaaaattacagtaaaagatggttatctattgttagcagaggagggggttacaaggtacatagtggggagatcataagactcattgtccagaagaagaatgtcacaaagtcgattgatcagctaaggtagggcagggacaagtcacaatggtaaaacattgtaattttggttaatcaggtaaggcaggaactggctgttttacttctttgtggttt---ttttcgctgctccagacttcttggctcctgcaggtcacctggatgtgtatgtgcaggtcaca-ggggt--tataatggctgagctttggctcagaggcctgacaCCATAGGTATACGGC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113605014 484 + 115148730 caagcgcgtccgtgtgaagagatcaccaaaacaggctttgtgtgagcaacaaggatgtttattcacttggctgcaagtgggctgagtccgaacagagagtcagagaagggagatggggaaggggttgctttataggagttggggaggtaatggaaaattacagtaaaaggtgattatctattctcagcagaggagggggttacagggtacatggtggggagatcataagactcattgtccagaggaagaatgtcacaaagtcgactgatcagctaaggtagggcagggacaagtcacaatggtaaaatgttgtaattttggttaatcaggtaaggcaggaactggctgttttacttcttta-tggtt---ttttcgctgctccagacttcttggctcctgcaggccacctggatgtgtatgtgcaggtcaca-gggttacccctgtggctgagcttcagctcagaggactgacaCCACAGGTATATGGC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183437734 487 + 184069350 caagcgcgtccgtgtgaagggaccactgaaacaggctttgtgtgagcaacaagaatgtttcttcacttgggtgcaagtgggctgagtccgaacagagagtcagcgaggggagatggggaaggggttgcttcataggagttgggtaggtaacggaaaattacagccaaaggtggttacctattgttagcagaggagggggttacagggtacatggtggggagatcgtaagtctcagtgtacagaagaagaatgtcacaaagtcgattgatcagctaaggtagggcaggtacaagtcacaatagtaaaatgttgtaattttggttaatcaggtaaggcagggactggctgtttcacttctttgtgggttttcttttggctgctccagacttcttggctcctgcaggccacctggatgcgtatgtgcaggtcacagggggt--tataatggctgagcttcggctcagaggcctgacaCCATAGGTATACGGC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188817376 487 + 189454096 caagcgcgtccgtgtgaagggaccactgaaacaggctttgtgtgagcaacaagaatgtttcttcacttgggtgcaagtgggctgagtccgaacagagagtcagcgaggggagatggggaaggggttgcttcataggagttgggtaggtaacggaaaattacagccaaaggtggttacctattgttagcagaggagggggttacagggtacatggtggggagatcgtaagtctcagtgtccagaagaagaatgtcacaaagtcgattgatcagctaaggtagggcaggtacaagtcacaatagtaaaatgttgtaattttggttaatcaggtaaggcagggactgtctgtttcacttctttgtgggttttcttttggctgctccagacttcttggctcctgcaggccacctggatgcgtatgtgcaggtcacagggggt--tataatggctgagctttggctcagaggcctgacaCCATAGGTATACGGC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178245416 486 + 178775436 CAAGTGCGTCCGTGTGAAGGGACCACtgaaacaggctttgtgtgagcaacaagaaTGTTTCTTCActtgggtgcaagtgggctgagtccgaacagagagtcagcgaagggagatggggaaggggttGCTTCATAGGAGTTGGGTAGGTAACGGAAAATTACAGCCAAAGGTGGTTATCTATTGTTAGCAGAGGAGGGGGTTACAGGGTACATGGTGGGAAGATCGTAAGTCTCAGTGTCCAGAAGAAGAATGTCACAAAGTCGATTGATCAGCTAAGGTAGGGCAGGTACAAGTCACAATAGTAAAATGTTGTAATTTTGGTTAATCAGGTAAGGCAGGGACTGGCTGTTTCACTTCTTTGTGGGTTCTCTTTTGGCTGCTCCAGACTTCTTGGCTCCTGCAGGCCACCTGGATGcgtatgtgcaggtcaca-ggggt--taTAATGGCTGAGCTtcggctcagaggcctgacaccatAGGTATACGGC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135185548 486 + 135778131 caagcgcgtccgtgtgaagagaccactgaaacaggctttgtgtgagcaacaaggatgtttcttcacttgggtgcaagtgggctgagtctgaacagagagtcagcgaggggagatggggaaggggttgctttataggagttgggtaggtaacggaaaattacagccaaaggtggttatctattgttagcagaggagggggttacagggtacatggtggggagatcataagactcattgtccagaagaagaatggcacaaagtcaattgatcagctaaggtagggcagggacaagtcacaatagtaaaatgttgtaattttggttaatcaggtaaggcagggactggctgtttcacttctttgtgggttttcttttggctgctccagacttcttggctcctgcaggccacctggatgcgtacgtgcaggtcacg-ggggt--tataatggctgagcttcggctcagaggcttgacaCCATAGGTATATGGC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87430723 212 - 129401213 I
e canFam3.chr16             17760393 495 -  59632846 I
e calJac3.chr3             190337521   7 - 190850796 I

a score=402729.000000
s hg38.chr4_KI270925v1_alt     30595 1549 +    555799  
s panTro4.chr4             192728841 1541 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197832649 1547 + 198332218  
i ponAbe2.chr4             C 0 C 0
e mm10.chr8                 87430723  212 - 129401213 I
e canFam3.chr16             17760393  495 -  59632846 I
e calJac3.chr3             190337521    7 - 190850796 I
e chlSab2.chr7             135186034    0 + 135778131 C
e papAnu2.chr5             178245902    0 + 178775436 C
e macFas5.chr5             188817863    0 + 189454096 C
e rheMac3.chr5             183438221    0 + 184069350 C
e nomLeu3.chr7b            113605498    0 + 115148730 C

a score=3648.000000
s hg38.chr4_KI270925v1_alt     32144 16 +    555799 atacaaaaattaattc
s panTro4.chr4             192730382 16 + 193495092 atacaaaaattaattc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197834196 16 + 198332218 atacaaaaattaattc
i ponAbe2.chr4             C 0 C 0
s canFam3.chr16             17760888 13 -  59632846 atacaAATAGGGT---
i canFam3.chr16            I 495 C 0
e mm10.chr8                 87430723 212 - 129401213 I
e calJac3.chr3             190337521  7 - 190850796 I
e chlSab2.chr7             135186034  0 + 135778131 C
e papAnu2.chr5             178245902  0 + 178775436 C
e macFas5.chr5             188817863  0 + 189454096 C
e rheMac3.chr5             183438221  0 + 184069350 C
e nomLeu3.chr7b            113605498  0 + 115148730 C

a score=7827.000000
s hg38.chr4_KI270925v1_alt     32160 14 +    555799 aagatggattaaag
s panTro4.chr4             192730398 14 + 193495092 aagatggattaaag
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197834212 14 + 198332218 aagatggattaaag
i ponAbe2.chr4             C 0 C 0
s mm10.chr8                 87430935 14 - 129401213 AAGATACATTATAA
i mm10.chr8                I 212 C 0
s canFam3.chr16             17760901 14 -  59632846 AAGTTATATTACAA
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190337521  7 - 190850796 I
e chlSab2.chr7             135186034  0 + 135778131 C
e papAnu2.chr5             178245902  0 + 178775436 C
e macFas5.chr5             188817863  0 + 189454096 C
e rheMac3.chr5             183438221  0 + 184069350 C
e nomLeu3.chr7b            113605498  0 + 115148730 C

a score=3085642.000000
s hg38.chr4_KI270925v1_alt     32174 885 +    555799  
s panTro4.chr4             192730412 884 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197834226 884 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113605498 885 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183438221 876 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188817863 875 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178245902 876 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135186034 874 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190337528 871 - 190850796  
i calJac3.chr3             I 7 C 0
s mm10.chr8                 87430949 882 - 129401213  
i mm10.chr8                C 0 C 0
s canFam3.chr16             17760915 860 -  59632846  
i canFam3.chr16            C 0 C 0

a score=582097.000000
s hg38.chr4_KI270925v1_alt     33059 192 +    555799 TGAAAATGCTTGCTTTGGATTA--TTTTCTTACTAATATAAAGTGCTGTTCTTCAGATATACCCTATAAACGAATACCAAATAGCCACCAGTGCTTAAATAATAAAACAAAGAAATCATCAGGTGTCCATGCCTAG-CTCTTCTCATCTCACACATACCCCAGTAGAAAATTCTATTTTTAACTCCCTTTTTTCT
s panTro4.chr4             192731296 192 + 193495092 TGAAAATGCTTGCTTTGGATTA--TTTTCTTACTAATATAAAGTGCTGTTCTTCAGATATAACCTATAAATGAATACCAAATAGCCACCAGTGCTTAAATAATAAAACAAAGAAATCATCAGGTGTCCATGCCTAG-CTCTTCTCATCTCGCACATACCTCAGTAAAAAATTCTATCTTTAACTCCCTTTTTTCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197835110 192 + 198332218 TGAAAATGCTTGCTTTGGATTA--TTTTCTTACTAATATAAAGTGCTGTTCTTCAGATATACCCTATAAACGAATACCAAATAGCCACCAGTGCTTAAATAATAAAACAAAGAAATCATCAGATGTCCATGCCTAG-CTCATCTCATCTCGCACATACCCCAGTAGAAAATTCAATCTTTAACTCCCTTTTTTCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113606383 195 + 115148730 TGAAAATGCTTGCTTTGGATTATTTTTTCTTACCAATATAAAGTGCTGTTGTTTAGATATACCCCATAAACGAATACCAAATAGCCACCAGTGCTTAAATAATAAAACAAAGAAATCATCAGGTGTCCAAGGCTAGCCTCATCTCATCTCACACATACCCCAGTAGAAAATTCAATCTTTAACTCCCTTTTTTCT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183439097 195 + 184069350 TGAAAATGCTTGCTTTTGATTATTTTTTCTTACTAATATAAAGTGCTGTTCTTCAGATATACCCTATAAACGAATATCAAATAGCCACCAGTGCTTAAATAATAAAACAAAGAAATCATCAGGTGACCAAGCCTGACCTCATCTCATCTCGCATATACCCCAGTAGAAAATTCAATCTTTAACTCCCTTTTTTCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188818738 195 + 189454096 TGAAAATGCTTGCTTTTGATTATTTTTTCTTACTAATATAAAGTGCTGTTCTTCAGATATACCCTATAAACGAATATCAAATAGCCACCAGTGCTTAAATAATAAAACAAAGAAATCATCAGGTGACCAAGCCTGACCTCATCTCATCTCGCATATACCCCAGTAGAAAATTCAATCTTTAACTCCCTTTTTTCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178246778 195 + 178775436 TGAAAATGCttgcttttgattattttttcttactaataTAAAGTGCTGTTCTTCAGATATACCCTATAAACGAATATCAAATAGCCACCAGtgcttaaataataaaacaaagaaatcatCAGGTGACCAAGCCTAGCCTCATCTCATCTCGCATATACCCCAGTAGAAAATTCAATCTTTAACTCCCTTTTTTCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135186908 195 + 135778131 TGAAAATGCTTGCTTTGGGTTATTTTTTCTTACTAATATAAAGTACTGTTCTTCAGATATACCCTATAAACAAATATCAAATAGCCACCAGTGCTTAAATAATAAAACAAAGAAATCATCAGGTGACCAAGCCTAGCCTCATCTCATCTCGCACATACCCCAATAGAAAATTCAATCTTTAACTCCCCTTTTTCT
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87431831 180 - 129401213 CAATAATGCTTGCTTTGAATTA----------CTAATGCAAAACGCTGTTCTTCAGCTATA-CCTATAAAGAAATGCCAAATTACCACCAGCAGTGAAATAATGGAACAAAAA----TTTAAGTGTCCAGTCCTTATCACATCTAATTCCAAACATACTCCAGCAGTAAGTTTAATATCTAGTTTCCTTCTATTC
i mm10.chr8                C 0 C 0
s canFam3.chr16             17761775 192 -  59632846 TGCAAATGCTTGCTTTACATTATGTTTTCTTGTTAATATAAGTTTCTGTGCATCAGATACA-CCTATGAAGAAATATCGAATTACCACTAGGACTAAAATGATGAGACAAA-AATTCCTCAGGTGTCCAACTCTAGCTCCCTCCCATCCCACATATACATCC-CAGAAAATTTAATCTTGAGCTACATTTTATTC
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190338399   0 - 190850796 C

a score=273278.000000
s hg38.chr4_KI270925v1_alt     33251 79 +    555799 TGCAGAAAGATGAAATAAAAAATCAGGGGATCTCTGCCTCTCAGTTTGTAAAGTGATGCCCAAGTTTCAAA--AGAGAGAA-
s panTro4.chr4             192731488 79 + 193495092 TGCAGAAAGATGAAATAAAAAATCAGGGGATCTCTGCCTCTCAGTTTGTAAAGTGATGCCCAAGTTTCTAA--AGAGAGAA-
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197835302 79 + 198332218 TGCAGAAAGATGAAATAAAAAATAAGGGGATCTCTGCCTCTCAGTTTGTAAAGTGATGCCCAAGTTTCTAA--AGAGAGAA-
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113606578 79 + 115148730 TGCAAAAAGATGGAATAAAAAATAAGGGGATCTCTGCCTCTCAGTTTCTAAAGTGATGCCCAAGTTTCTAA--AGACAGAA-
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183439292 79 + 184069350 TGCAGAAAGATGAAATTAAAAATAAGAGGATCTCTGTCTTTTAGTTTCTGAAGTGCTGCCCAAGTTTCTAA--AGAGGGAA-
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188818933 79 + 189454096 TGCAGAAAGATGAAATTAAAAATAAGAGGATCTCTGTCTTTTAGTTTCTGAAGTGCTGCCCAAGTTTCTAA--AGAGGGAA-
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178246973 79 + 178775436 TGCagaaagatgaaattaaaaataagaggatCTCTGTCTCTTAGTTTCTAAAGTGCTGCCCAAGTTTCTAA--AGAGGGAA-
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135187103 79 + 135778131 TGCAGAAAGATGAAATTAAAAATAAGAGGATCTCTGTCTCTTAGTTTCTAAAGTGATGCCCAAGTTTCTAA--AGAGAGAA-
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190338399 80 - 190850796 TGCAGAAAGACGAAAT-AAAAATAAAGGGATCTCTGCCTCTAAGTTTCTAAAGTGATGCCCACGTTTTAAAAGAGAGAGAA-
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87432011 79 - 129401213 AACAAAAAGATGAAATATTCAGTGATGGGCTCTCTGCCTCTTTTTTTATAAAATCATTCTCAAGTTTGAAG--AAGAAGAA-
i mm10.chr8                C 0 C 0
s canFam3.chr16             17761967 79 -  59632846 TGCAGAAGGAAGAAATGGGAAATAATGGG-TCTCTGCCTCCAATTTTCTAAGGCAATGCCCAAGTTATTAA--AAGCAACAA
i canFam3.chr16            C 0 I 212

a score=66073.000000
s hg38.chr4_KI270925v1_alt     33330 26 +    555799 AGAA-A------------------TTTAAATCAAACCTTCCACAG
s panTro4.chr4             192731567 26 + 193495092 AGAA-A------------------TTTAAATCAAACCTTCCACAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197835381 26 + 198332218 AGAT-A------------------ATTAAATCAAACCTTCCACAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113606657 26 + 115148730 AGAT-A------------------TTTAAATCAAACCTTCCACAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183439371 26 + 184069350 AGAT-A------------------TCTAAACCAAACCTTCCACCG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188819012 26 + 189454096 AGAT-A------------------TCTAAACCAAACTTTCCACCG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178247052 26 + 178775436 AGAT-A------------------TCTAAACCAAACCTTCCACCG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135187182 27 + 135778131 AGATAA------------------TCTAAACCAAACCTTCCACCG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190338479 26 - 190850796 AAAC-A------------------TGTAAATCAAACCTTCCACAG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87432090 44 - 129401213 AAAA-AGGAGAAGGGAAAGTAAATTGTAAATTCAAGTTTACACAG
i mm10.chr8                C 0 C 0
e canFam3.chr16             17762046 212 -  59632846 I

a score=1809102.000000
s hg38.chr4_KI270925v1_alt     33356 560 +    555799  
s panTro4.chr4             192731593 557 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197835407 560 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113606683 559 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183439397 573 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188819038 573 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178247078 573 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135187209 571 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190338505 531 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87432134 469 - 129401213  
i mm10.chr8                C 0 C 0
s canFam3.chr16             17762258 554 -  59632846  
i canFam3.chr16            I 212 I 127

a score=212973.000000
s hg38.chr4_KI270925v1_alt     33916  68 +    555799 CTATATGCATT-------------------------GTAAAA---------TTTAC----------------------------------------------------TTTTCAAACTTTAAGTGAGTTAAAGTTAAGTTACTTTTAGGAAACT
s panTro4.chr4             192732150  68 + 193495092 CTATATGCATT-------------------------GTAAAA---------TTTAC----------------------------------------------------TTTTCAAACTTTAAGTGAGTTAAAGTTAAGTTACTTTTAGGAAACT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197835967  68 + 198332218 GTATATGCATT-------------------------GTAAAA---------TTTAC----------------------------------------------------TTTCCAAACTTTAAGTGAGTTAAAGTTAAGTTACTTTTAGGAAACT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113607242  68 + 115148730 CTATACGCATT-------------------------GTAAAA---------TTTAC----------------------------------------------------TTTTCAAACTTTAAGTGAGTTAAAGTTAAGTTACTTTTAGGAAACT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183439970  68 + 184069350 CTCTATGCATT-------------------------TTAAAA---------TTTAC----------------------------------------------------TTTTCAAACATTAAGCGAGTTGAAGTTAAGTTACTTTTAGGAAACC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188819611  68 + 189454096 CTCTATGCATT-------------------------TTAAAA---------TTTAC----------------------------------------------------TTTTCAAGCATTAAGCGAGTTGAAGTTAAGTTACTTTTAGGAAACC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178247651  68 + 178775436 ctatatgcatt-------------------------ttaaaa---------tttac----------------------------------------------------ttctcaaactttaagCAAGTTGAAGTTAAGTTACTTTTAGGAAACC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135187780  68 + 135778131 CCATATGCATT-------------------------TTAAAA---------TTTAC----------------------------------------------------TTTTCAAACATTAAGCGAGTTGAAGTTAAGTTACTTTTAGGAAACC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190339036  68 - 190850796 CTGCACGCATT-------------------------TTAAAA---------TTTAT----------------------------------------------------TTTTCAAACTTTAAGTGACTTGAAGGTAAGTTACCTTTAGGAAGCC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87432603 154 - 129401213 ATTTACACATTGATTATTATCAAAAGTATAATCCAGTTAAAAGTTTGTCTTTTTATGCTAGAATAATATATTAAAAATGTGGCCCTGGTTTTAAAAGACTTGTATGTATTTTCAAACCCAAAGTGATATGAAAATAATTTATCTTGAGGAAACT
i mm10.chr8                C 0 C 0
s canFam3.chr16             17762939  68 -  59632846 TTACGTGTTTT-------------------------TAAAAA---------TTTGT----------------------------------------------------TTTCCAAGCTTTAAGTGACTTGAAGATCTATCACCTCAAGAAAACC
i canFam3.chr16            I 127 I 218

a score=15317.000000
s hg38.chr4_KI270925v1_alt     33984 5 +    555799 -AACCT
s panTro4.chr4             192732218 5 + 193495092 -AACCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197836035 5 + 198332218 -AACCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113607310 5 + 115148730 -AACCT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183440038 5 + 184069350 -AACCC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188819679 5 + 189454096 -AACCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178247719 5 + 178775436 -AACCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135187848 5 + 135778131 -AACCC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190339104 6 - 190850796 TAACCT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87432757 6 - 129401213 GAGCCA
i mm10.chr8                C 0 C 0
e canFam3.chr16             17763007 218 -  59632846 I

a score=19068.000000
s hg38.chr4_KI270925v1_alt     33989 5 +    555799 ATCAG
s panTro4.chr4             192732223 5 + 193495092 ATCAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197836040 5 + 198332218 ATCAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113607315 5 + 115148730 ATCAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183440043 5 + 184069350 ATCAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188819684 5 + 189454096 ATCAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178247724 5 + 178775436 ATCAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135187853 5 + 135778131 CTCAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190339110 5 - 190850796 ACcag
i calJac3.chr3             C 0 I 488
s mm10.chr8                 87432763 5 - 129401213 ATTAA
i mm10.chr8                C 0 C 0
s canFam3.chr16             17763225 5 -  59632846 ATCAA
i canFam3.chr16            I 218 C 0

a score=494085.000000
s hg38.chr4_KI270925v1_alt     33994 182 +    555799 GAAGAGAAAACACTGGCTTGCCAGATCTAAACATCAGATTGAGCACACGTTTGCTGCAATTTGAGTATGTTCTTTAAGCATCTCGTGCCTCCATTTCTTCATTG-ACAAGGCATCAAC--------------------TCTCTAC--GAGAATTAGAGAGAATGAATATGACACATGAGAAAGGTGTTAGACACTGAAGGGAAAG
s panTro4.chr4             192732228 182 + 193495092 GAAGAGAAAACACTGGCTTGCCAGATCTAAACATCAGATTGAGCACACGTTTGCTGCAATTTGAGTATGTTCTTTAAGCATCTCGTGCCTCCATTTCTTCATTG-ACAAGGCATCAAC--------------------TCTCTAC--GAGAATTAGAGAGAATGAATATGACACATGAGAAAGGTGTTAGACACTGAAGGGAAAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197836045 182 + 198332218 GAAGAGAAAACACTGGCTTGCCACATCTAAACATCAGATTGAGCACGCGTTTGCTGCAATTTGAGTATGTTCTTTAAGCATCTCGTGCCTCCATTTCTTCATTG-ACAAGGCGTCAAC--------------------TCTCTAT--GAGAATTAGAGAGAATGAATATGACACATGAGAAAGGTGTGAGACACTGAAGGGAAAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113607320 182 + 115148730 GAAGAGAAAACACTGGCTTGCCACATCTAAACATCAGATTGAGCACACGTTTGCTGCAATTTGAGTATGTTCTTTAAGCATCTCGTGTCTCCATTTCTTCATTG-ACAAGGTATCAAC--------------------TCTCTAT--GAGAATTAGAGAGAATGAATATGACACATGAGAAAGGTGTTAGACACTGAAGGAAAAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183440048 180 + 184069350 GAAGAGAAAACACTGGCTGGCCAGATCTAAACGTCAGATTGAGCACACGTTTGCTGTAATTTGAGTATGTTCTTTAAGCATCTTGTGCCTCCATTTCTTCACTG-ACAAGGCATCAA----------------------CCCTAT--GAGAATTAGAGAGAATGAGTATGACATCTGAGAAGGGTGTTGGACACTGAAGGGAAAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188819689 180 + 189454096 GAAGAGAAAACACTGGCTGGCCAGATCTAAACGTCAGATTGAGCACACGTTTGCTGTAATTTGAGTATGTTCTTTAAGCATCTTGTGCCTCCATTTCTTCATTG-ACAAGGCATCAA----------------------CCCTat--gagaattagagagaatgagtatgacatctgagaaGGGTGTTGGACACTGAAGGGAAAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178247729 180 + 178775436 GAAGAGAAAACACTGGCTGGCCAGATCTAAACGTCAGATTGAGCACACGTTTGCTGTAATTTGAATATGTTCTTTAAGCATCTcgtgcctccatttcttcattg-aCAAGGCATCAA----------------------CTCTAT--GAGAATTAGAGAGAATGAGTATGACATCTGAGAAAGATATTAGACACTGAAGGGAAAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135187858 180 + 135778131 GAAGAGAAAACACTGGCTGGCCAGATCTAAACGTCAGATTGAGCACACGTTTGCTGTAATTTGAGTATGTTCTTTAAGCATCTTGTGCTTCCATTTCTTCATTG-ACAAGGCATCAA----------------------CCCTAT--GAGAATTAGACAGAATGAGTATGACATCTGAGAAGGGTGTTGGACACTGAAGGGAAAG
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87432768 196 - 129401213 TAAGAAGAAAAGCT---TTGTCAGACCTAAAT-TCAAATTAAGCAAATATGTTCTTTCATTTTGGTTTTCTATTTAAGCATAT-GTGTCTTAAGTTTTTGCTCACAAAAGATGACAAT--AATACATATTTTTAAG--TTTTTATTAAAAAATGAGAGCAAATGGATATGGTGTCGTGGAAAGCTATTATCCACTAAAAGAAAAG
i mm10.chr8                C 0 I 826
s canFam3.chr16             17763230 199 -  59632846 GAAGAGGAAATGCTGATTTGACTGACCTAAAAATCCGATTTGGCATATAATTGCTATCATttggatatgttgtttcagcttcttggatctcaatcaccccactg-acaaaatatggaaataatacctaccctgcagactttctat--cggaattaga--gaattaatataatgtcttaccaaagtactagacacTAAATGGAAA-
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190339115 488 - 190850796 I

a score=54803.000000
s hg38.chr4_KI270925v1_alt     34176 24 +    555799 CTGGTGTTC-TTTCCAAGAACATGT
s panTro4.chr4             192732410 24 + 193495092 CTGGTGTTC-TTTCCAAGAACATGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197836227 24 + 198332218 CTGGTGTTC-TCTCCGAGGACATGC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113607502 24 + 115148730 CTGGCGTTC-TTTCCGAGAACATGT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183440228 24 + 184069350 GTGGTGTTC-TTTCTGAGAACATAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188819869 24 + 189454096 GTGGTGTTC-TTTCTGAGAACATAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178247909 24 + 178775436 GTGGTGTTC-TTTCTGTGAACATGT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135188038 24 + 135778131 GTGGTGTTC-TTTCTGAGAACATAT
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17763429 24 -  59632846 -CACTGTTCATTTTTAAGAATATAT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87432964 826 - 129401213 I
e calJac3.chr3             190339115 488 - 190850796 I

a score=1586670.000000
s hg38.chr4_KI270925v1_alt     34200 636 +    555799  
s panTro4.chr4             192732434 636 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197836251 629 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113607526 622 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183440252 637 + 184069350  
i rheMac3.chr5             C 0 I 20
s macFas5.chr5             188819893 637 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178247933 637 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135188062 637 + 135778131  
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87433790 642 - 129401213  
i mm10.chr8                I 826 I 3
s canFam3.chr16             17763453 619 -  59632846  
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190339115 488 - 190850796 I

a score=29582.000000
s hg38.chr4_KI270925v1_alt     34836 28 +    555799 TTTCT------CTGTGACACGGACAAGACAGCAC
s panTro4.chr4             192733070 28 + 193495092 TTTGT------CTGTGACACGGACAAGACAGCAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197836880 28 + 198332218 TTTCT------CTGTGACATGGACAACACAGCAC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113608148 28 + 115148730 TTTCT------CTGTGACAAGGACAACACAGCAC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188820530 21 + 189454096 TTTCTGTGTGACTGTGACGTG-------------
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178248570 34 + 178775436 TTTCTGTGTGACTGTGACGTGGACAACACAGCAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135188699 34 + 135778131 TTTCTGTGTGACTGTGACGTGGACAACACCACAC
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87434435 25 - 129401213 TCTCC---------TGACCTAGACAAATGGAAAT
i mm10.chr8                I 3 C 0
s canFam3.chr16             17764072 28 -  59632846 CCTCT------CCATTGTGTACACAATATAGAAC
i canFam3.chr16            C 0 I 22
e calJac3.chr3             190339115 488 - 190850796 I
e rheMac3.chr5             183440889 20 + 184069350 I

a score=204806.000000
s hg38.chr4_KI270925v1_alt     34864 79 +    555799 TGGCGCAGCCACACATTGTGCCTGCCTTAgagaatccacctttggattcattagcat-gggggttttt--------------gaagactttcgt
s panTro4.chr4             192733098 80 + 193495092 TGGCGCAGCCACACATTGTGCCTGCCTTAGAGAATCCACCTTTGGATTCATTAGCATGGGGGGTTTTT--------------GAAGACTTTTGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197836908 79 + 198332218 TGGCACAGCCACACATTGTGCCCGCCTTAgagaatccacctttggattcattagcat-gggggttttt--------------gaagactttcat
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113608176 79 + 115148730 TGGCGCAGCCACACATTGTGCCTGCCTTAgagaatccacctttggattcattagcat-gggggttttt--------------gaagactttcat
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183440909 78 + 184069350 TGGCCCAGCCACACATTGTGTCTGCCTTAGAG-ATCCACCTTTGGATTGGTTAGCAT-GGGGGTTTTT--------------GGAGACTTTCAT
i rheMac3.chr5             I 20 C 0
s macFas5.chr5             188820551 78 + 189454096 TGGCCCAGCCACACATTGTGTCTGCCTTAGAG-ATCCACCTTTGGATTGGTTAGCAT-GGGGGTTTTT--------------GGAGACTTTCAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178248604 78 + 178775436 TGGCCCAGCCACACATTGTGTCTGCCTTAGAG-ATCCACCTTTGGATTGGTTAGCAT-GGGGGTTTTT--------------GGAGACTTTCAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135188733 78 + 135778131 TGGCACAGCCACACATTGTGTCTGCCTTAGAG-ATCCACCTTTGGATTCGTCAGCAT-AAGAGTTTTT--------------GGAGACTTTCAT
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87434460 71 - 129401213 GTGCCCAGCCGCTGCCTGTTCCCAGTTTATGTATCTTGTTTTTGAATT--------T-TGATGGTTTT--------------GAAGAACTTTGT
i mm10.chr8                C 0 C 0
s canFam3.chr16             17764122 91 -  59632846 GGGCATAGCCACAAATTGTACCTGGCTTAgagaatttatctctggacttatca--at-gagagttttttgtgattttgaccagaacaatttcAT
i canFam3.chr16            I 22 I 172
e calJac3.chr3             190339115 488 - 190850796 I

a score=254443.000000
s hg38.chr4_KI270925v1_alt     34943 86 +    555799 aagaatgctttTATTAAAAATAACACCAA--TATTCTTTTAAATGTAACAAAATAATTTTGAGATAATCTGGAAAAATTGAATCATAG
s panTro4.chr4             192733178 86 + 193495092 AAGAATGCTTTTATTAAAAATAACACCAA--TATTCTTTTAAATGTAACAAAATAATTTTGAGATAATCTGGAAAAATTGAATCATAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197836987 86 + 198332218 aagaatgctttTATTAAAAATAACACCAG--TATTCTTTTAAATGTAACAAAATAATTTTGAGATAATCTGGAAAAATTGAATCATAG
i ponAbe2.chr4             C 0 I 335
s nomLeu3.chr7b            113608255 86 + 115148730 aagaatgctttTATTAAAAATAACACCAG--TATTCTTTTAAATGTAACAAAATAATTTTGAGATAATCTGGAAAAATTGAATCATAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183440987 86 + 184069350 AAGAATGCTTTTATTGAAAATAACACCAG--TATTCTTTTAAATGTAACAAAATAATCTTGAGATAATCTGGAAAAATTGAATCACAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188820629 86 + 189454096 AAGAATGCTTTTATTGAAAATAACACCAG--TATTCTTTTAAATGTAACAAAATAATCTTGAGGTAATCTGGAAAAATTGAATCACAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178248682 86 + 178775436 AAGAATGCTTTTATTGAAAATAACACcag--tattcttttaaatataacaaaataatctTGAGATAATCTGGAAAAATTGAATCACAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135188811 86 + 135778131 AAGAATGCTTTTATTAAAAATAACACCAG--TATTCTTTTAAATGTAACAAAATAATCTTGAGATAATCTGGAAAAATTGAATCACAG
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87434531 88 - 129401213 CAGCACAATTTTATTTAAAGTAGCAAAAAATTATCTTTTAACAATTAGCCAAACAATTTTCAGACCACCTGGAATAATTGAACAATAG
i mm10.chr8                C 0 C 0
s canFam3.chr16             17764385 82 -  59632846 aaGAACAATTTCATTAAAAATAATATCAG--TAT-CTTTTGAGCTTAA-AAAACAAGTTTACGACTA-ATGGAAGAAATTAGTAATA-
i canFam3.chr16            I 172 C 0
e calJac3.chr3             190339115 488 - 190850796 I

a score=190996.000000
s hg38.chr4_KI270925v1_alt     35029 91 +    555799 CTTGTGTTGGTCAGGGCATGGAACGTTGGAACTCTTGCTCATCCATA-GG---AGAAGAACTTTCGTGGAAATTCATTTGACCTAAATACCATCC
s panTro4.chr4             192733264 91 + 193495092 CTTGTGTTGGTCAGGGCATGGAACGTTGGAACTCTTGCTCATCCATA-GG---AGAAGAACTTTTGTGGAAATTAATTTGACCTAAATACCATCC
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113608341 94 + 115148730 CCTGTGTTGGTCAGGGCATGGGACGTTGGAACTCTTGTTCATCCATA-GGAGAAGAAGAACTTTTGTGGAAATTAATTTGATCTAAATACCATCC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183441073 94 + 184069350 CCTGTGTTGGTCAGGGCATGGGACGTTGGAACTCTTTCTCATCCGTA-GGAGAAGAAGAACTTCTGTGGAAATTAATTTGACCTAAATACCATCC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188820715 94 + 189454096 CCTGTGTTGGTCAGGGCATGGGACGTTGGAACTCTTTCTCATCCGTA-GGAGAAGAAGAACTTGTGTGGAAATTAATTTGACCTAAATACCATCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178248768 94 + 178775436 CCTGTGTTGGTCAGGGCATGGGACGTTGGAACTCTTTCTCATCCGTA-GGAGAAGAAGAACTTCTGTGGAAATTAATTTGACCTAAATACCATCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135188897 94 + 135778131 CCTGTGTTGGTCAGGGCATGGGATGTTGGAACTCTTGCTCATCCATA-GGAGAAGAAGAACTTCTCTGGAAATTAATTTGACCTAAATACCATCC
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87434619 66 - 129401213 TGTACATTTGTAAAGCCAAAACAAATTGGTACTTTTGCT-------------------------TTGAGAAGGCAATTTAACCTAAA----GTCC
i mm10.chr8                C 0 C 0
s canFam3.chr16             17764467 95 -  59632846 TTCGTGTTAGTGTGGGTATGGGACATTGGCATTCTTGGTCATCAATACGGGAAAGGAAAATTATTATGGAAGAAAATTTGGCCTACAAACCATCC
i canFam3.chr16            C 0 I 178
e calJac3.chr3             190339115 488 - 190850796 I
e ponAbe2.chr4             197837073 335 + 198332218 I

a score=115014.000000
s hg38.chr4_KI270925v1_alt     35120 46 +    555799 ATAGTCTCTGAACTGGTAAATTGAAATTTAGAAATTTCTCAAAGGA
s panTro4.chr4             192733355 46 + 193495092 ATAGTCTCTGACCTGGTAAATTGAAATTTAGAAATTCCTCAAAGGA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113608435 46 + 115148730 ATAGTCTTTGAACTGGTAAATTGAAATTTAGAAATTTATCAAAGGA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183441167 46 + 184069350 ATAGCCTCTGAACTGGTAAATTGAAATTTAGAAATTTCTCAAAGGA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188820809 46 + 189454096 ATAGCCTCTGAACTGGTAAATTGAAATTTAGAAATTTCTCAAAGGA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178248862 46 + 178775436 ATAGCCTCTGAACTGGTAaattgaaatttagaaatttctcaaagga
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135188991 46 + 135778131 ATAGCCTCTGAACTGGTAAATTGAAATTTAGAAATTTCTCAAAGGA
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87434685 45 - 129401213 ATTGTCTTTAAATCAATGAATTGAGATTT-GTGATGTTTCAAAaga
i mm10.chr8                C 0 I 715
s canFam3.chr16             17764740 46 -  59632846 ATAGTTTTTGAACTAATAAATTAACACTTCGAAATTTCTTAGAAAA
i canFam3.chr16            I 178 C 0
e calJac3.chr3             190339115 488 - 190850796 I
e ponAbe2.chr4             197837073 335 + 198332218 I

a score=4512.000000
s hg38.chr4_KI270925v1_alt     35166 4 +    555799 AAGA
s panTro4.chr4             192733401 4 + 193495092 AAGA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113608481 4 + 115148730 AATA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183441213 4 + 184069350 CAGA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188820855 4 + 189454096 CAGA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178248908 4 + 178775436 aaga
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135189037 4 + 135778131 AAGA
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17764786 4 -  59632846 TATA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87434730 715 - 129401213 I
e calJac3.chr3             190339115 488 - 190850796 I
e ponAbe2.chr4             197837073 335 + 198332218 I

a score=15108.000000
s hg38.chr4_KI270925v1_alt     35170 7 +    555799 AAAATAT
s panTro4.chr4             192733405 7 + 193495092 AAAATAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197837408 7 + 198332218 AAAATAT
i ponAbe2.chr4             I 335 C 0
s nomLeu3.chr7b            113608485 7 + 115148730 AAAATAT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183441217 7 + 184069350 AAAATAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188820859 7 + 189454096 AAAATAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178248912 7 + 178775436 aaaatat
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135189041 7 + 135778131 AAAATAT
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17764790 5 -  59632846 TAGAT--
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87434730 715 - 129401213 I
e calJac3.chr3             190339115 488 - 190850796 I

a score=761256.000000
s hg38.chr4_KI270925v1_alt     35177 293 +    555799 CAGTTCATAAGTATTTACATTCA--AGAGACATGTTCACTTTAGTCTGACTTAAATGAGTAAAAAA--TCAATGAAATATTATCTGTtttcctctccacctgtttgtactacgtgtactattttacccttctgaaatgcctctgtatcttctcttccttatctcacttgggttt---cttt---tagactcagcttgtgacttacctcttcaaggaagccttttctgatatcccaggctagataagatgttcctcctctgtactcccacaga--tccccacgtac----tttttttttttttatcatgg
s panTro4.chr4             192733412 293 + 193495092 CAGTTCATAAGTATTTACATTCA--AGAGACATGTTCAGTTTAGTCTGACTTAAATGAGTAAAAAA--TCAATGAAATATTATCTGTtttcctctccacctgtttgtactacgtgtactattttacccttctgaaatgcctctgtatcttctcttccttatctcacttgggttt---cttt---tagactcagcttgtgacttacctcttcaaggaagccttttctgatatcccaggctagataagatgttcctcctctgtactcccacaga--tccccatgtac----tttttttttttttatcatgg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197837415 288 + 198332218 CTGCTCATAAGTATTTACA-TCA--AGAGACATGTTCACTTTAGTCCGACTTAAATAAGT-AAAAA--TCAATGAAATATTATCCG-tttcctctccacctgtttgtactacatgtactatttta-ccttatgaaatgcctctgtatcttctcttccttatctcacttgggttt---cttt---tagactcagctggtgacttacctcttcaaggaagtcttttctgatatcccaggctagataagatgttgctcctctgtacttccacaga--tccccacatac-----ttttttttttttatcatgg
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113608492 296 + 115148730 CTGCTCGTAAGTATTTACATTCA--AGAGGCATGTTCACTTTAGTCTGACTTAAATGAGTAAAAAA--TCAATGAAATATTATCTGTtttcctctccacctgtttgcactatatgcactattttacccttctgaaatgcctctgtatcttctcttccttatctcacttgggttt---cttt---tagactcagcttgtgacttacctcttcaaggaagccttttctgatatcccaggctagataagatgttcctcctctgtact-ccacaga--tctccacatgctttttttttttttttttatcatgg
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183441224 290 + 184069350 CTGCTCATAAGTATTTACATTCA--AGAGACACGTTCACTTTAGTCTGACTTAAAAGAGCAAAAAAATTCAATGAAGTATTATCTGTtttcctctccacctgtttatactacgtgtactattttacccttcggaaatgcctctgtatcttctcttccttatctcacctgggttt---cttt---tagactcagctcgtgacttacctcttcaaggaag-cttttctgacatcccatcctagatacgatgtccgtcctctgtaattccacaga--tccccacaca--------ttttttttttatcattg
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188820866 291 + 189454096 CTGCTCATAAGTATTTACATTCA--AGAGACACGTTCACTTTAGTCTGACTTAAAAGAGTAAAAAAATTCAATGAAATATTATCTGTTTTCCTCTCCACCTGTTTATACtacgtgtactattttacccttcggaaatgcctctgtatcttctcttccttatctcacttgggttt---cttt---tagactcagctcgtgacttacctcttcaaggaagccttttctgacatcccatcctagatacgatgtccctcctctgtaattccacaga--tccccacaca--------ttttttttttatcattg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178248919 292 + 178775436 ctgctcATAAGTATTTGCATTCA--AGAGACACGTTCACTTTAGTCTGacttaaaagagtaaaaaaattcaatgaaatattatctgTTTTCCTCTCCACCTGTTTATACTACGTGTACTATTTTACCCTTCTGAAATGCCTCTGTATCTTCTCTTCCTTATCTCACTTGGGTTT---CTTT---TAGACTCAGCTTGTGACTTACCTCTTCAAGGAAGCCTTTTCTGACATCCCATCCTAGATACGATGTCCCTCCTCTGTAATCCCACAGA--Tacccacacat-------ttttttttttatcattg
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135189048 289 + 135778131 CTGCTCATAAGTATTTACATTCA--AGAAACACGTTCACTTTAGTCTGACTTAAAAGAGTAAAAAAATTCAATGAAATATTATCTGTTTTCCTCTCCACCTGTTTATACTATGTGTACTATTTTACCCTTCTGAAATGCCTCTGTATCTTCTCTTCCTTATCTCAGTTGGGTtt---cttt---tagactcagctcatgacttacctcttcaaggaagccttttctgacatcccatcctagatacgatgtccctcctctgtactcccacaga--tccccacaca----------ttttttttatcattg
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87435445 261 - 129401213 caacaCATAAGTATTGGCATATATCACATGCATGTTTACCTTAATGTGTTTTATA-------------TTGGGAAAATACTGAGTATATTTCTTTC--TTTTTTTCTACTATATGTACAGTTTAATGCTCCTAAAATATCTCTATTTC----CTTCAGTATTGTCTTTGGGCTT---CTTTCTCCATGCTCAGTCCA-----TCCCTCCCACAGGAAGTC-ACTCTAAAAT------CTACATAAGATGTTCCACATGTGAA----CATAGG--AGTTTCTGTA--------ATTTTTTTTTATCATTG
i mm10.chr8                I 715 C 0
s canFam3.chr16             17764795 286 -  59632846 --GCACACAAGTATTTACATACA----GGACATGTACACCTTTGCTTGACTTCACTGAATAAAAAG--CAAATTGGATATTTTCTGTTATCCTCTCCA-CTATTATTAttacatatactactttatgtgcctaaaatatcttggtatctcctcttcctcacctaacttgggcttctccttt---ctgacatagctcatttctcacattgtccaggaagctttttttgatatcccagaagagataggacgctccttctctgaattcccatagaggtttctgcata-----------tttttttaacattg
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190339115 488 - 190850796 I

a score=291020.000000
s hg38.chr4_KI270925v1_alt     35470 78 +    555799 agcttatcacattgcattaaatctgtttgggtgactctcttctatatcaaaccagctaacctcaaggTCCCAACGCAC
s panTro4.chr4             192733705 78 + 193495092 agcttatcacattgcattaaatctgtttgggtgactctcttctatatcaaaccagctaacctcaaggTCCCAACGCAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197837703 78 + 198332218 agcttatcacattgcattaaatctgtttgggtgactatcttctatatcaaacCAACTAACCGCAAGGTCCCAACGCAC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113608788 78 + 115148730 agcttatcatattgcattaaatctgtttgggtgactctcttctatatcaaaccagctaacctcaaggTCCCAACGCAC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183441514 78 + 184069350 agcttatcacattgcattaaatctgtttgggtgactctcttctatatcaaaccagctaacctcaaggTCCCAATGCAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188821157 78 + 189454096 agcttatcacattgcattaaatctgtttgggtgactgtcttctatatcaaaccagctaacctcaaggTCCCAATGCAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178249211 78 + 178775436 agCTTATCACATTGCATTAAATCTGTTTGGGTGACTCTCTTCTATATCAAACCAGCTAACCTCAAGGTCCCAATGCac
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135189337 78 + 135778131 agcttatcacattgcattaaatctgtttgggtgactctcttctgtatcaaaccagctaacctcaaggTCCGAATGCCC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190339603 77 - 190850796 AGCTCATCACACTGCATT-AATCTGTTTGGGTGACTCTATTCTGTATCAAACCAGCTAACCCCAAGGTCCCAGTGCAC
i calJac3.chr3             I 488 C 0
s mm10.chr8                 87435706 71 - 129401213 TACTTACTACATGATATTAAACCTGTTTGAATGGTTTTCTTTTATACCAAACCA-------CAAAAATCATAAGGCAT
i mm10.chr8                C 0 C 0
s canFam3.chr16             17765081 73 -  59632846 tgcctattacattacattaaatcgatttaaatgattttcttctgtaacaaaccataaaatcttgaggT----ATGCA-
i canFam3.chr16            C 0 C 0

a score=45949.000000
s hg38.chr4_KI270925v1_alt     35548 22 +    555799 TCAAAAATTGTTTTTAATTGAG
s panTro4.chr4             192733783 22 + 193495092 TCAAAAATTGTTTTTAATTGAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197837781 22 + 198332218 TCAAAAATTGTTTTTAATTGAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113608866 22 + 115148730 TCAAAAATCGTTTTTAATTGAG
i nomLeu3.chr7b            C 0 T 19
s rheMac3.chr5             183441592 22 + 184069350 TGGAAAATTGTTTTTAATTGAG
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178249289 22 + 178775436 tgaaaaattgtttttaactgAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135189415 22 + 135778131 GGAAAAATTGTTTTTAATTGAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190339680 21 - 190850796 TCAAAAGTTG-TTTTAATTGAG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87435777 22 - 129401213 TCAAAAACGCATTTTGAATGAA
i mm10.chr8                C 0 C 0
s canFam3.chr16             17765154  7 -  59632846 -AAAAAAT--------------
i canFam3.chr16            C 0 C 0
e macFas5.chr5             188821235  0 + 189454096 C

a score=3893.000000
s hg38.chr4_KI270925v1_alt     35570 2 +    555799 CT
s panTro4.chr4             192733805 2 + 193495092 CT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197837803 2 + 198332218 CT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183441614 2 + 184069350 CT
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178249311 2 + 178775436 CT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135189437 2 + 135778131 CT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190339701 2 - 190850796 CC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87435799 2 - 129401213 CC
i mm10.chr8                C 0 C 0
e canFam3.chr16             17765161 0 -  59632846 C
e macFas5.chr5             188821235 0 + 189454096 C
e nomLeu3.chr7b            113608888 19 + 115148730 T

a score=34775.000000
s hg38.chr4_KI270925v1_alt     35572 17 +    555799 GAGCTGTTTAACTGAAC
s panTro4.chr4             192733807 17 + 193495092 GAGCTGTTTAACTGAAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197837805 17 + 198332218 GAACTGTTTAACTGAAC
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183441616 17 + 184069350 GAACTGTTTAACTAAAC
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178249313 17 + 178775436 GAACTGTTTAACTAAAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135189439 17 + 135778131 GAACTGTTTAACTAAAC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190339703 17 - 190850796 GAACTGTTTATCTGAAC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17765161 16 -  59632846 -AGCTTTTGAATTGAAC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87435801  0 - 129401213 C
e macFas5.chr5             188821235  0 + 189454096 C
e nomLeu3.chr7b            113608888 19 + 115148730 T

a score=43785.000000
s hg38.chr4_KI270925v1_alt     35589 26 +    555799 AGGGATTATAGAAGAGACAGTGCGGC
s panTro4.chr4             192733824 26 + 193495092 AGGGATTATAGAAGAGACAGTGCAGC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197837822 26 + 198332218 AGGGATTATAGAAGAGACAGTGTGGC
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183441633 26 + 184069350 AGGCATTATAGAAGAGACAGTGTGGC
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178249330 26 + 178775436 AGGCATTATAGAAGAGACAGTGTGGC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135189456 26 + 135778131 AGGCATTATAGAAGTGACAGTGCGGC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190339720 26 - 190850796 AGGGATTACAGAAGAGACCGTGTGGC
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87435801  0 - 129401213 C
e canFam3.chr16             17765177  0 -  59632846 C
e macFas5.chr5             188821235  0 + 189454096 C
e nomLeu3.chr7b            113608888 19 + 115148730 T

a score=6620.000000
s hg38.chr4_KI270925v1_alt     35615 5 +    555799 AGAGG
s panTro4.chr4             192733850 5 + 193495092 AGAGG
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183441659 5 + 184069350 AGAGG
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178249356 5 + 178775436 AGAGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135189482 5 + 135778131 AGAGG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190339746 5 - 190850796 GGAGG
i calJac3.chr3             C 0 T 57
e mm10.chr8                 87435801 0 - 129401213 C
e canFam3.chr16             17765177 0 -  59632846 C
e macFas5.chr5             188821235 0 + 189454096 C
e nomLeu3.chr7b            113608888 19 + 115148730 T
e ponAbe2.chr4             197837848 0 + 198332218 C

a score=23632.000000
s hg38.chr4_KI270925v1_alt     35620 30 +    555799 CCAACTGAGTTTGTGGTGGTAGAACATCCA
s panTro4.chr4             192733855 30 + 193495092 CCAACTGAGTTTGTGGTGGTAGAATATCCA
i panTro4.chr4             C 0 I 127
s rheMac3.chr5             183441664 30 + 184069350 CCAGCTGAGTTTGTGGTAGTAGAATACGCA
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178249361 30 + 178775436 CCAGCTGAGTTTGTGGTGGTAGAATACGCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135189487 30 + 135778131 TCAACTGAGTTTGTAGTGGTAGAATACGCA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87435801  0 - 129401213 C
e canFam3.chr16             17765177  0 -  59632846 C
e calJac3.chr3             190339751 57 - 190850796 T
e macFas5.chr5             188821235  0 + 189454096 C
e nomLeu3.chr7b            113608888 19 + 115148730 T
e ponAbe2.chr4             197837848  0 + 198332218 C

a score=14076.000000
s hg38.chr4_KI270925v1_alt     35650 17 +    555799 GGTAGAGTCTTTCAAAA
s panTro4.chr4             192734012 17 + 193495092 GGTGGAGTCTTCCAGAA
i panTro4.chr4             I 127 C 0
s rheMac3.chr5             183441694 17 + 184069350 GGTAGAGTCTTTCAGAA
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178249391 17 + 178775436 GGTAGAGTCTTTCAGAA
i papAnu2.chr5             C 0 T 119
s chlSab2.chr7             135189517 17 + 135778131 GGTAGAATCTTTCAGAA
i chlSab2.chr7             C 0 T 109
e mm10.chr8                 87435801  0 - 129401213 C
e canFam3.chr16             17765177  0 -  59632846 C
e calJac3.chr3             190339751 57 - 190850796 T
e macFas5.chr5             188821235  0 + 189454096 C
e nomLeu3.chr7b            113608888 19 + 115148730 T
e ponAbe2.chr4             197837848  0 + 198332218 C

a score=633.000000
s hg38.chr4_KI270925v1_alt     35667 8 +    555799 GAACTGTT
s panTro4.chr4             192734029 8 + 193495092 GAACCGTT
i panTro4.chr4             C 0 C 0
e mm10.chr8                 87435801 0 - 129401213 C
e canFam3.chr16             17765177 0 -  59632846 C
e calJac3.chr3             190339751 57 - 190850796 T
e chlSab2.chr7             135189534 109 + 135778131 T
e papAnu2.chr5             178249408 119 + 178775436 T
e macFas5.chr5             188821235 0 + 189454096 C
e rheMac3.chr5             183441711 0 + 184069350 C
e nomLeu3.chr7b            113608888 19 + 115148730 T
e ponAbe2.chr4             197837848 0 + 198332218 C

a score=1353.000000
s hg38.chr4_KI270925v1_alt     35675 3 +    555799 TGG
s panTro4.chr4             192734037 3 + 193495092 TGG
i panTro4.chr4             C 0 C 0
s macFas5.chr5             188821235 3 + 189454096 TGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178249289 3 + 178775436 tga
i papAnu2.chr5             T 119 C 0
e mm10.chr8                 87435801 0 - 129401213 C
e canFam3.chr16             17765177 0 -  59632846 C
e calJac3.chr3             190339751 57 - 190850796 T
e chlSab2.chr7             135189534 109 + 135778131 T
e rheMac3.chr5             183441711 0 + 184069350 C
e nomLeu3.chr7b            113608888 19 + 115148730 T
e ponAbe2.chr4             197837848 0 + 198332218 C

a score=5972.000000
s hg38.chr4_KI270925v1_alt     35678 7 +    555799 AAAATTG
s panTro4.chr4             192734040 7 + 193495092 AAAATTG
i panTro4.chr4             C 0 T 162
s nomLeu3.chr7b            113608869 7 + 115148730 AAAATCG
i nomLeu3.chr7b            T 19 C 0
s macFas5.chr5             188821238 7 + 189454096 AAAATTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178249292 7 + 178775436 aaaattg
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87435801 0 - 129401213 C
e canFam3.chr16             17765177 0 -  59632846 C
e calJac3.chr3             190339751 57 - 190850796 T
e chlSab2.chr7             135189534 109 + 135778131 T
e rheMac3.chr5             183441711 0 + 184069350 C
e ponAbe2.chr4             197837848 0 + 198332218 C

a score=4550.000000
s hg38.chr4_KI270925v1_alt     35685 5 +    555799 TTTTT
s nomLeu3.chr7b            113608876 5 + 115148730 TTTTT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188821245 5 + 189454096 TTTTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178249299 5 + 178775436 ttttt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135189425 5 + 135778131 TTTTT
i chlSab2.chr7             T 109 C 0
e mm10.chr8                 87435801 0 - 129401213 C
e canFam3.chr16             17765177 0 -  59632846 C
e calJac3.chr3             190339751 57 - 190850796 T
e rheMac3.chr5             183441711 0 + 184069350 C
e ponAbe2.chr4             197837848 0 + 198332218 C
e panTro4.chr4             192734047 162 + 193495092 T

a score=3485.000000
s hg38.chr4_KI270925v1_alt     35690 3 +    555799 AAT
s nomLeu3.chr7b            113608881 3 + 115148730 AAT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188821250 3 + 189454096 AAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178249304 3 + 178775436 aac
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135189430 3 + 135778131 AAT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190339694 3 - 190850796 AAT
i calJac3.chr3             T 57 C 0
e mm10.chr8                 87435801 0 - 129401213 C
e canFam3.chr16             17765177 0 -  59632846 C
e rheMac3.chr5             183441711 0 + 184069350 C
e ponAbe2.chr4             197837848 0 + 198332218 C
e panTro4.chr4             192734047 162 + 193495092 T

a score=36133.000000
s hg38.chr4_KI270925v1_alt     35693 19 +    555799 TGAACTGAACTGTTTAACT
s nomLeu3.chr7b            113608884 19 + 115148730 TGAGCTGAACTGTTTAACT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188821253 19 + 189454096 TGAGCTGAACTGTTTAACT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178249307 19 + 178775436 tgAGCTGAACTGTTTAACT
i papAnu2.chr5             C 0 I 82
s chlSab2.chr7             135189433 19 + 135778131 TGAGCTGAACTGTTTAACT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190339697 19 - 190850796 TGAGCCGAACTGTTTATCT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87435801 19 - 129401213 TGAAAAGAACTCCTTAGCT
i mm10.chr8                C 0 C 0
s canFam3.chr16             17765177 19 -  59632846 TAAAGTGAACTGTAtaact
i canFam3.chr16            C 0 C 0
e rheMac3.chr5             183441711  0 + 184069350 C
e ponAbe2.chr4             197837848  0 + 198332218 C
e panTro4.chr4             192734047 162 + 193495092 T

a score=9107.000000
s hg38.chr4_KI270925v1_alt     35712 4 +    555799 GAAC
s nomLeu3.chr7b            113608903 4 + 115148730 GAAC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183441711 4 + 184069350 GAAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188821272 4 + 189454096 AAAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178249408 4 + 178775436 GAAC
i papAnu2.chr5             I 82 T 82
s chlSab2.chr7             135189452 4 + 135778131 AAAC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190339716 4 - 190850796 GAAC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87435820 3 - 129401213 -GAC
i mm10.chr8                C 0 C 0
s canFam3.chr16             17765196 4 -  59632846 gaat
i canFam3.chr16            C 0 C 0
e ponAbe2.chr4             197837848 0 + 198332218 C
e panTro4.chr4             192734047 162 + 193495092 T

a score=67667.000000
s hg38.chr4_KI270925v1_alt     35716 31 +    555799 AGGGATTATAAAAGAGACAGTGTGGCAGAGG
s nomLeu3.chr7b            113608907 31 + 115148730 AGGGATTATAGAAGAGACAGTGTGGCAGAGG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183441715 31 + 184069350 AGGGATTATAGAAGAGACAGTGTGGCAGAGG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188821276 31 + 189454096 AGGCATTATAGAAGAGACAGTGTGGCAGAGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178249330 31 + 178775436 AGGCATTATAGAAGAGACAGTGTGGCAGAGG
i papAnu2.chr5             T 82 C 0
s chlSab2.chr7             135189456 31 + 135778131 AGGCATTATAGAAGTGACAGTGCGGCAGAGG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190339720 31 - 190850796 AGGGATTACAGAAGAGACCGTGTGGCGGAGG
i calJac3.chr3             C 0 T 57
s mm10.chr8                 87435823 31 - 129401213 AGGAAATACAGAAAGAACAATTTAGAGGAAG
i mm10.chr8                C 0 C 0
s canFam3.chr16             17765200 21 -  59632846 agggaatacagaagagacagt----------
i canFam3.chr16            C 0 C 0
e ponAbe2.chr4             197837848  0 + 198332218 C
e panTro4.chr4             192734047 162 + 193495092 T

a score=27561.000000
s hg38.chr4_KI270925v1_alt     35747 30 +    555799 TCAACTGAATTTGTGGTGGTAGAATATCCT
s nomLeu3.chr7b            113608938 30 + 115148730 TCAGCTGAGTTTGTGGTGGTAGAAGATCCA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183441746 30 + 184069350 CCAGCTGAGTTTGTGGTAGTAGAATACGCA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188821307 30 + 189454096 CCAGCTGAGTTTGTGGTGGTAGAATATCCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178249361 30 + 178775436 CCAGCTGAGTTTGTGGTGGTAGAATACGCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135189487 30 + 135778131 TCAACTGAGTTTGTAGTGGTAGAATACGCA
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87435854 11 - 129401213 TCA--TATATTTG-----------------
i mm10.chr8                C 0 C 0
s canFam3.chr16             17765221 21 -  59632846 ---------tttggggaaaccacatattca
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190339751 57 - 190850796 T
e ponAbe2.chr4             197837848  0 + 198332218 C
e panTro4.chr4             192734047 162 + 193495092 T

a score=27922.000000
s hg38.chr4_KI270925v1_alt     35777 21 +    555799 GGTAGAGTCTTTCAAAAGAAC
s panTro4.chr4             192733885 21 + 193495092 GGTAGAGTCTTTCAAAAGAAC
i panTro4.chr4             T 162 C 0
s nomLeu3.chr7b            113608968 21 + 115148730 GGTACAGTCTTCCAGAAGAAC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183441776 17 + 184069350 GGTAGAGTCTTTCAGAA----
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188821337 21 + 189454096 GGTAGAGTCTTTCAGAAGAAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178249391 21 + 178775436 GGTAGAGTCTTTCAGAAGAAC
i papAnu2.chr5             C 0 T 123
s chlSab2.chr7             135189517 21 + 135778131 GGTAGAATCTTTCAGAAGAAC
i chlSab2.chr7             C 0 T 4
s canFam3.chr16             17765242 15 -  59632846 gcttagatatgttaa------
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87435865  0 - 129401213 C
e calJac3.chr3             190339751 57 - 190850796 T
e ponAbe2.chr4             197837848  0 + 198332218 C

a score=2238.000000
s hg38.chr4_KI270925v1_alt     35798 4 +    555799 TGTT
s panTro4.chr4             192733906 4 + 193495092 TGTT
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113608989 4 + 115148730 TGTT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188821358 4 + 189454096 TGTT
i macFas5.chr5             C 0 T 127
e mm10.chr8                 87435865 0 - 129401213 C
e canFam3.chr16             17765257 0 -  59632846 C
e calJac3.chr3             190339751 57 - 190850796 T
e chlSab2.chr7             135189538 4 + 135778131 T
e papAnu2.chr5             178249412 123 + 178775436 T
e rheMac3.chr5             183441793 0 + 184069350 C
e ponAbe2.chr4             197837848 0 + 198332218 C

a score=7246.000000
s hg38.chr4_KI270925v1_alt     35802 10 +    555799 TGGAAAATTG
s panTro4.chr4             192733910 10 + 193495092 TGGAAAATTG
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113608993 10 + 115148730 TGGAAAATTG
i nomLeu3.chr7b            C 0 T 115
s macFas5.chr5             188821235 10 + 189454096 TGGAAAATTG
i macFas5.chr5             T 127 C 0
s papAnu2.chr5             178249289 10 + 178775436 tgaaaaattg
i papAnu2.chr5             T 123 C 0
s mm10.chr8                 87435865  1 - 129401213 ---------G
i mm10.chr8                C 0 C 0
s canFam3.chr16             17765257  1 -  59632846 ---------g
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190339751 57 - 190850796 T
e chlSab2.chr7             135189538  4 + 135778131 T
e rheMac3.chr5             183441793  0 + 184069350 C
e ponAbe2.chr4             197837848  0 + 198332218 C

a score=1973.000000
s hg38.chr4_KI270925v1_alt     35812 5 +    555799 TTTTT--
s panTro4.chr4             192733920 5 + 193495092 TTTTT--
i panTro4.chr4             C 0 C 0
s macFas5.chr5             188821245 5 + 189454096 TTTTT--
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178249299 5 + 178775436 ttttt--
i papAnu2.chr5             C 0 C 0
s mm10.chr8                 87435866 4 - 129401213 -CTTT--
i mm10.chr8                C 0 C 0
s canFam3.chr16             17765258 5 -  59632846 --tttgc
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190339751 57 - 190850796 T
e chlSab2.chr7             135189538 4 + 135778131 T
e rheMac3.chr5             183441793 0 + 184069350 C
e nomLeu3.chr7b            113609003 115 + 115148730 T
e ponAbe2.chr4             197837848 0 + 198332218 C

a score=4700.000000
s hg38.chr4_KI270925v1_alt     35817 7 +    555799 AATTGAA
s panTro4.chr4             192733925 7 + 193495092 AATTGAA
i panTro4.chr4             C 0 C 0
s macFas5.chr5             188821250 7 + 189454096 AATTGAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178249304 7 + 178775436 aactgAG
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190339694 7 - 190850796 AATTGAG
i calJac3.chr3             T 57 C 0
s canFam3.chr16             17765263 6 -  59632846 aataga-
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87435870 0 - 129401213 C
e chlSab2.chr7             135189538 4 + 135778131 T
e rheMac3.chr5             183441793 0 + 184069350 C
e nomLeu3.chr7b            113609003 115 + 115148730 T
e ponAbe2.chr4             197837848 0 + 198332218 C

a score=19470.000000
s hg38.chr4_KI270925v1_alt     35824 15 +    555799 CTGAACTGTTTAACT
s panTro4.chr4             192733932 15 + 193495092 CTGAACTGTTTAACT
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113608888 15 + 115148730 CTGAACTGTTTAACT
i nomLeu3.chr7b            T 115 C 0
s macFas5.chr5             188821257 15 + 189454096 CTGAACTGTTTAACT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178249311 15 + 178775436 CTGAACTGTTTAACT
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190339701 15 - 190850796 CCGAACTGTTTATCT
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87435870  0 - 129401213 C
e canFam3.chr16             17765269  0 -  59632846 C
e chlSab2.chr7             135189538  4 + 135778131 T
e rheMac3.chr5             183441793  0 + 184069350 C
e ponAbe2.chr4             197837848  0 + 198332218 C

a score=9115.000000
s hg38.chr4_KI270925v1_alt     35839 4 +    555799 GAAC
s panTro4.chr4             192733947 4 + 193495092 GAAC
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113608903 4 + 115148730 GAAC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183441793 4 + 184069350 GAAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188821272 4 + 189454096 AAAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178249326 4 + 178775436 AAAC
i papAnu2.chr5             C 0 I 82
s chlSab2.chr7             135189534 4 + 135778131 GAAC
i chlSab2.chr7             T 4 C 0
s calJac3.chr3             190339716 4 - 190850796 GAAC
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87435870 0 - 129401213 C
e canFam3.chr16             17765269 0 -  59632846 C
e ponAbe2.chr4             197837848 0 + 198332218 C

a score=63023.000000
s hg38.chr4_KI270925v1_alt     35843 27 +    555799 AGGGATTATAAAAGAGACAGTGTGGCA
s panTro4.chr4             192733951 27 + 193495092 AGGGATTATAAAAGAGACAGTGTGGCA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113608907 27 + 115148730 AGGGATTATAGAAGAGACAGTGTGGCA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183441797 27 + 184069350 AGGGATTATAGAAGAGACAGTGTGGCA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188821276 27 + 189454096 AGGCATTATAGAAGAGACAGTGTGGCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178249412 27 + 178775436 AAGGATTATAGAAGAGACAGTGTGGCA
i papAnu2.chr5             I 82 C 0
s chlSab2.chr7             135189538 27 + 135778131 AAGGATTATAGAAAAGACAGTGTGGCA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190339720 27 - 190850796 AGGGATTACAGAAGAGACCGTGTGGCG
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87435870  0 - 129401213 C
e canFam3.chr16             17765269  0 -  59632846 C
e ponAbe2.chr4             197837848  0 + 198332218 C

a score=15669.000000
s hg38.chr4_KI270925v1_alt     35870 4 +    555799 GAGG
s panTro4.chr4             192733978 4 + 193495092 GAGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197837848 4 + 198332218 GAGG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113608934 4 + 115148730 GAGG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183441824 4 + 184069350 GAGG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188821303 4 + 189454096 GAGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178249439 4 + 178775436 GAGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135189565 4 + 135778131 GAGG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190339747 4 - 190850796 GAGG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87435870 4 - 129401213 GAGT
i mm10.chr8                C 0 I 1
e canFam3.chr16             17765269 0 -  59632846 C

a score=937.000000
s hg38.chr4_KI270925v1_alt     35874 2 +    555799 TC
s panTro4.chr4             192733982 2 + 193495092 TC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197837852 2 + 198332218 TC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113608938 2 + 115148730 TC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183441828 2 + 184069350 CC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188821307 2 + 189454096 CC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178249443 2 + 178775436 TC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135189569 2 + 135778131 TC
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87435875 1 - 129401213 T-
i mm10.chr8                I 1 C 0
e canFam3.chr16             17765269 0 -  59632846 C
e calJac3.chr3             190339751 0 - 190850796 C

a score=1388416.000000
s hg38.chr4_KI270925v1_alt     35876 466 +    555799  
s panTro4.chr4             192733984 466 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197837854 455 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113608940 462 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183441830 465 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188821309 465 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178249445 465 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135189571 466 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190339751 426 - 190850796  
i calJac3.chr3             C 0 I 518
s mm10.chr8                 87435876 449 - 129401213  
i mm10.chr8                C 0 C 0
s canFam3.chr16             17765269 485 -  59632846  
i canFam3.chr16            C 0 C 0

a score=484196.000000
s hg38.chr4_KI270925v1_alt     36342 165 +    555799 ctgcCtgtatttgtcttctgggctacagtaacaccataccacagacaggggg--cttatacaaaagaaatttatcttctcacagttctggaggctgtaagtccaaaggccatgcaaagatg-------gggtatgctttctcctgaggcctcttttgttagcttacagatggca
s panTro4.chr4             192734450 165 + 193495092 ctgcCtgtatttgtcttctgggctgcagtaacaccataccacagacaggggg--cttatacaaaagaaatttatcttctcatagttctggaggctgtaagtccaaaggccacgcaaagatg-------gggtatgctttctcctgaggcctctcttggtagcttacagatggca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197838309 165 + 198332218 ctgcCtgtatttgtcttgtgggctacagtaacaccataccacatacaggggg--cttatataacagaaatttatcttctcacagttctggaggctgtaagtccaaaggccacgcgaagatg-------gggtatgctttctcctgaggcctctcttggtggcttacagatggct
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113609402 165 + 115148730 CTCCCtgtatttgtcttctgggctgcagtaacaccacaccacagacaggggc--cttatacaacagaaatttatcttctcacggttttggaggctggaagtccaaaggccatgcgaagatg-------gggtgtgctttctcctgaggcctctcttggtagcttacagatggct
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183442295 164 + 184069350 CTGCCTGCATTTGCCTTCTgggctgcggtaacaccgcaccacagacagggg---cttatacaacagaaatttatcttctcacagttctggaggctgcaagtcctaaagccacgcgaagatg-------gggtatgctttctcctgaggcctctgctggtggcttacagacggct
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188821774 164 + 189454096 CTGCCTGCATTTGCCTTCTgggctgcggtaacaccgcaccacagacagggg---cttatacaacagaaatttatcttctcacagttctggaggctgcaagtcctaaagccacgcgaagatg-------gggtatgctttctcctgaggcctctgctggtggcttacagacggct
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178249910 163 + 178775436 CTGCCCGTATTTGCCTTCTGGGCTGCGGTAACACCACACCACAGACAGGGG---CttatacaacagaaatttatcttctcacagttctggaagctgcaAGTCCTAAAGCCACGCGAAGAT--------GGGTATgctttctcctgaggcctctgttgGTGGCTTACAGACGGCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135190037 164 + 135778131 ctgcCtgtatttgccttctgggctgcggtaacaccacaccacagacagggg---cttatacaacagaaatttatcttctcacagttctggaggctgcaagtcctaaagccatgcaaagatg-------gggtatgctttctcctgaggtctctgctggtggcttacagacggct
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190340695 162 - 190850796 CTGCCTGTA-CTGTCCTGTgggccgccgtcacaccacaccacaggcaagggg--cttatgcaacagaaatttatcttctcacag-tctggaggcggcgagtccaagggccacgtgaagatg-------ggctgtggtttctcctgaggcctctcttggtggcttacaga-ggct
i calJac3.chr3             I 518 C 0
s mm10.chr8                 87436325 133 - 129401213 CTG--TGTAGTGATTTTCAAGATT----------CATA----------------CCCAAATCCCAGAGATTGATGGGTTAAGAGTTCTTAAAGCC-TGATGCCTAAGACAATG-ACAGAT---------AATTTGATTTCCTAGGAGGTCACTACT--CAGCTTACATATGGCA
i mm10.chr8                C 0 I 3956
s canFam3.chr16             17765754 155 -  59632846 ctATCtgtattggtttgctagg-------------actccccaaataaagagcacctaaagagcacaaacttaatttatcacagctctggaggctggatgtccaagatcc------agatgcctcccaaggtttgggtcctcctgaggccttttcccttggtgtacagatggtg
i canFam3.chr16            C 0 C 0

a score=1028459.000000
s hg38.chr4_KI270925v1_alt     36507 329 +    555799 gccttccctctatgtcttcacatggccttttctctgtgcatgcatgccccggtgtctttcttgtgtatcccaatctcctctttttacatggacaccagtcagaatggattagagcccac--------cctcattttatctgaattacttctttaaaggctccatcctaaaaggctttgtctgcaaaatctctatctgaagtactg-gggattaggttttaaaatatgaattt-gaagggaaccggttcagtcTTTA--------ctctctggacctccaaaatcaatctgtgtccctctcactagcaaaatatattcagcaccccatctcaacagcctcaaagtctt
s panTro4.chr4             192734615 328 + 193495092 gccttccctctatgtcttcacatggccttttctctgtgcatgcatgccccagtgtctttct-gtgtatcccaatctcctctttttacatggacaccagtcagaatggattagagcccac--------cctcattttatctgaattacttctttaaaggccccatcctaaaaggctttgtctgcaaaatctctatctgaagtactg-gggattaggttttaaaatacgaattt-gaagggaaccggttcagtcTTTA--------ctctctggacctccaaaatcaatctgtgtccctctcactagcaaaatatattcagcaccccatctcaacagccccaaagtctt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197838474 328 + 198332218 gccttccctctacgtcttcacgtggccttttccctgtgcacgcaggccccggtgtctttct-gtgtatcccaatctcctctttttacatggacaccagtcagaatggattagagcccac--------cctcattttatctgaattacttctttaaaggctccatcctaaaaggctttgtctgcaaaatctctatctgaagtactt-tagattaggttttaaaatatgaattt-gaagggaaccagttcagtcTTTA--------ctctccggacccccaaaatcaatctgtgtccctctcactagcaaaatatattcagcaccccatctcaacagccctaaagtctt
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113609567 328 + 115148730 gccttccctctgtgtcttcacatggccttttctctgtgcatgcaggccctggtgtctttct-gtgtatcccaatctcctctttttacatggacaccagtcagaatggattagagcccac--------cctcattttatctgaattacttctttaaaggttccatcctaaaaggctttgtctgcaaaatctctatctgaagtactg-ggaattaggttttaaaatatgaatct-gaagggaaccagttcagtcTTTA--------ctctctggacctccaaaatcaatctgtgtccctctcattagcaaaatatattcagcaccccacctcaacagccccaaagtctt
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183442459 335 + 184069350 gcctttcctctgtgtcttcacatggccttttctctgtgcatgcgtgccccagtgtccttct-gtgtatcccagtctcctctttttacatggacaccagtcagaatggattacagcccaccctgatggcctcattttatctgaattacctctttaaaggctccatcctaaaagg-tttgtctgcaaaatctctgtctgaagtactg-gggattaggttttaaaatatgaattt-gaaaggaaccagttcagtcTTTA--------ctctctggacctccaaaatcaatccgtgtccttctcactagcaaaacatattcagcaccccatctcaacagtcccaaagtctt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188821938 335 + 189454096 gcctttcctctgtgtcttcacatggccttttctctgtgcatgcgtgccccagtgtccttct-gtgtatcccagtctcctctttttacatggacaccagtcagaatggattacagcccaccctgatggcctcattttatctgaattacctctttaaaggctccatcctaaaagg-tttgtctgcaaaatctctgtctgaagtactg-gggattaggttttaaaatatgaattt-gaaaggaaccagttcagtcttta--------ctctctggacctccaaaatcaatccgtgtccttctcactagcaaaacatattcagcaccccatctcaacagtcccaaagtctt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178250073 335 + 178775436 GCCTtccctctgtgtcttcacatggccttttctctgtgcatgCATGCCCCAGGGTCTTTCT-GTGTATCCCAGTCTCCTCTTTTTACATGGACACCAGTCGGAATGGATTACAGCCCACCCTGATGGCCTCATTTTATCtgaattacctctttaaaggctccATCCTAAAAGG-TTTGTCTGCAAAATCTCTGTGTGAAGTACTG-GGaattaggttttaaaatatgaattt-gaagGGAACCAGTTCAGTTTTTA--------CTCTCTGGACCTCCAAAATCAATCCGTGTCCTTCTCACTAGCAAAACATATTCAGCACCCCATCTCAACagtcccaaagtctt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135190201 335 + 135778131 gccttccctctgtgtcttcacatggccttttctctgtgcatgcatgccccggtgtccttct-gtgtatcccagtctcctctttttacatggacaccagtcagaatggattacagcccaccctgatggcctcattttatctgaattacctctttaaaggctccatcctaaaagg-tttgtctgcaaaatctctgtctgaagtactg-gggattaggttttaaaatatgaattt-gaagggaaccagttcagtcttta--------ctctctggacctccaaaatcaatccgtgtccttctcactagcaaaacatactcagcatcccatctcaacagtcccaaagtctt
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190340857 326 - 190850796 gctttctctatgtgtcttcacgtggccttttctctgtgcatg-gtgccccggtgactttct-gtatatcccattctcctctttttacctggagagcacctagaatggattagggcccatcctgatggcctcattttatcttaattacctctttagaggctccctcctaaaaggctttgtctgcaaaagctctat--------ctg-gggatcaggttttaaaatacgaatgt-gaagggaaacagctcagGATTTA--------ctctctgga-ctccaaaatcaatccacgctcctctcacaagcaaaatacattcagtgccccatctgaacagcctcaaaagctg
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17765909 309 -  59632846 -gcctcttgctgtgtattcacttggccttttctctgtgt----gatccccaatgtctttct-gggtgtccttattctgacctaggatatgga------tcagaat-gattaaggcccacccaaatgaacttattgtaacttagttaactatttaaaggctctatcaccaga-----------tacagtcac-------aatactgaggggctgggcttcaacatatgggtttagagggaaaacaattcagttcataacaCTCAGcccctaggtaccctagaattg----gtatcctactcacaagcaaaatatattca---ctccactccaacagcccccaaTTATT
i canFam3.chr16            C 0 I 3684
e mm10.chr8                 87436458 3956 - 129401213 I

a score=2404472.000000
s hg38.chr4_KI270925v1_alt     36836 877 +    555799  
s panTro4.chr4             192734943 877 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197838802 878 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113609895 878 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183442794 869 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188822273 869 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178250408 871 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135190536 873 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190341183 856 - 190850796  
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87436458 3956 - 129401213 I
e canFam3.chr16             17766218 3684 -  59632846 I

a score=1419478.000000
s hg38.chr4_KI270925v1_alt     37713 494 +    555799  
s panTro4.chr4             192735820 494 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197839680 471 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113610773 466 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183443663 469 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188823142 469 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178251279 471 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135191409 469 + 135778131  
i chlSab2.chr7             C 0 T 25
s calJac3.chr3             190342039 457 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17769902 450 -  59632846  
i canFam3.chr16            I 3684 C 0
e mm10.chr8                 87436458 3956 - 129401213 I

a score=4019.000000
s hg38.chr4_KI270925v1_alt     38207 2 +    555799 GG
s panTro4.chr4             192736314 2 + 193495092 GG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197840151 2 + 198332218 GG
i ponAbe2.chr4             C 0 T 27
s nomLeu3.chr7b            113611239 2 + 115148730 GG
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188823611 2 + 189454096 GG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178251750 2 + 178775436 GG
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190342496 2 - 190850796 AG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17770352 2 -  59632846 AG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87436458 3956 - 129401213 I
e chlSab2.chr7             135191878 25 + 135778131 T
e rheMac3.chr5             183444132 0 + 184069350 C

a score=44557.000000
s hg38.chr4_KI270925v1_alt     38209 39 +    555799 CATTATATAAACAAGAGAGCCTAGGGTGGAACAAAGTAG
s panTro4.chr4             192736316 39 + 193495092 CATTATATAAACAAGAGAGCCTAGGGTGGAACAAAGTAG
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113611241 38 + 115148730 -CTTATATAAACAAGAAAGCCTAGGGTGGAACAAAATAG
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188823613 39 + 189454096 CATGATATAAACAAGAGAACCTAGAGTGGAATAAAATAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178251752 39 + 178775436 CATGATATAAACAAGAGAACCTAGAGTGGAATAAAATAG
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190342498 39 - 190850796 CATTATATAAACAAGGGAGCCTAGAGTGGGAAAAAATAG
i calJac3.chr3             C 0 T 51
s canFam3.chr16             17770354 30 -  59632846 CATTACATATATAATGATACCTCTAGCAAA---------
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87436458 3956 - 129401213 I
e chlSab2.chr7             135191878 25 + 135778131 T
e rheMac3.chr5             183444132  0 + 184069350 C
e ponAbe2.chr4             197840153 27 + 198332218 T

a score=12900.000000
s hg38.chr4_KI270925v1_alt     38248 14 +    555799 AATCTAGATGTTTT
s panTro4.chr4             192736355 14 + 193495092 AATCTAGATGTTTT
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113611279 14 + 115148730 AATCTAGATGTTTT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188823652 14 + 189454096 AATCTAGATGTTTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178251791 14 + 178775436 AATCGAGATGTTTT
i papAnu2.chr5             C 0 C 0
s canFam3.chr16             17770384 14 -  59632846 AATATAAATAATAA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87436458 3956 - 129401213 I
e calJac3.chr3             190342537 51 - 190850796 T
e chlSab2.chr7             135191878 25 + 135778131 T
e rheMac3.chr5             183444132  0 + 184069350 C
e ponAbe2.chr4             197840153 27 + 198332218 T

a score=14490.000000
s hg38.chr4_KI270925v1_alt     38262 9 +    555799 GAAGGCTAA
s panTro4.chr4             192736369 9 + 193495092 GAAGGCTAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197840126 9 + 198332218 GAAGGATAA
i ponAbe2.chr4             T 27 C 0
s nomLeu3.chr7b            113611293 9 + 115148730 GAAGGATAA
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188823666 9 + 189454096 GAAGGCAAA
i macFas5.chr5             C 0 T 80
s papAnu2.chr5             178251805 9 + 178775436 GAAGGCAAA
i papAnu2.chr5             C 0 T 80
s chlSab2.chr7             135191853 9 + 135778131 GAAGGATAA
i chlSab2.chr7             T 25 C 0
s canFam3.chr16             17770398 9 -  59632846 GTagggaag
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87436458 3956 - 129401213 I
e calJac3.chr3             190342537 51 - 190850796 T
e rheMac3.chr5             183444132 0 + 184069350 C

a score=12426.000000
s hg38.chr4_KI270925v1_alt     38271 6 +    555799 AGAGGG
s panTro4.chr4             192736378 6 + 193495092 AGAGGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197840135 6 + 198332218 AGAGGG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113611302 6 + 115148730 AGCAGG
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188823595 6 + 189454096 AGAGGG
i macFas5.chr5             T 80 C 0
s papAnu2.chr5             178251734 6 + 178775436 AGAGGG
i papAnu2.chr5             T 80 C 0
s chlSab2.chr7             135191862 6 + 135778131 AGAGGG
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17770407 6 -  59632846 ggaagg
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87436458 3956 - 129401213 I
e calJac3.chr3             190342537 51 - 190850796 T
e rheMac3.chr5             183444132 0 + 184069350 C

a score=111027.000000
s hg38.chr4_KI270925v1_alt     38277 51 +    555799 TATGAGAATGGGCATTATATAAACAAGAGAGCCTAGGGTGGAACAAAGTAG
s panTro4.chr4             192736384 51 + 193495092 TATCAGAATGGGCATTATATAAACAAGAGAGCCTAGGGTGGAACAAAGTAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197840141 51 + 198332218 TATCAGAATGGGCATTATAGAAACAAGAGAGCCTAGGGTGGAACAAAATAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113611308 51 + 115148730 TATCAGAATGGGCACTATATAAACAAGACAGCCTAGGGTGGAACAAAGTAG
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188823601 51 + 189454096 TATCAGAAAGGGCATGATATAAACAAGAGAACCTAGAGTGGAATAAAATAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178251740 51 + 178775436 TATCAGAAAGGGCATGATATAAACAAGAGAACCTAGAGTGGAATAAAATAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135191868 51 + 135778131 TATCAGAAAGGGCATTATATAAACAAGAGAGCCTAGAGTGGAACAAAATAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190342486 51 - 190850796 TATCAGAATGAGCATTATATAAACAAGGGAGCCTAGAGTGGGAAAAAATAG
i calJac3.chr3             T 51 T 51
s canFam3.chr16             17770413 41 -  59632846 ----agagagga------ggggacaggaggggatgggaagggagggaaggT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87436458 3956 - 129401213 I
e rheMac3.chr5             183444132  0 + 184069350 C

a score=40904.000000
s hg38.chr4_KI270925v1_alt     38328 20 +    555799 AATCTAGATGTTTTGAAGGC
s panTro4.chr4             192736435 20 + 193495092 AATCTAGATGTTTTGAAGGC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197840192 20 + 198332218 AATCTAGACGTTTTGAAGGC
i ponAbe2.chr4             C 0 T 86
s nomLeu3.chr7b            113611359 20 + 115148730 AATCCAGATGTTTTGAAGGA
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188823652 20 + 189454096 AATCTAGATGTTTTGAAGGC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178251791 20 + 178775436 AATCGAGATGTTTTGAAGGC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135191919 20 + 135778131 AATCTAGATGTTTTGAAGGC
i chlSab2.chr7             C 0 T 80
s canFam3.chr16             17770454 20 -  59632846 AATTTAGACACCTTGACAGT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87436458 3956 - 129401213 I
e calJac3.chr3             190342537 51 - 190850796 T
e rheMac3.chr5             183444132  0 + 184069350 C

a score=6343.000000
s hg38.chr4_KI270925v1_alt     38348 4 +    555799 TAAA
s panTro4.chr4             192736455 4 + 193495092 TAAA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113611379 4 + 115148730 TAAA
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188823672 3 + 189454096 -AAA
i macFas5.chr5             C 0 T 79
s papAnu2.chr5             178251811 3 + 178775436 -AAA
i papAnu2.chr5             C 0 T 79
s chlSab2.chr7             135191859 4 + 135778131 TAAA
i chlSab2.chr7             T 80 C 0
s canFam3.chr16             17770474 4 -  59632846 TAAA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87436458 3956 - 129401213 I
e calJac3.chr3             190342537 51 - 190850796 T
e rheMac3.chr5             183444132 0 + 184069350 C
e ponAbe2.chr4             197840212 86 + 198332218 T

a score=4707.000000
s hg38.chr4_KI270925v1_alt     38352 5 +    555799 --GAGGG
s panTro4.chr4             192736459 5 + 193495092 --GAGGG
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113611383 5 + 115148730 --GAGGG
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188823596 5 + 189454096 --GAGGG
i macFas5.chr5             T 79 C 0
s papAnu2.chr5             178251735 5 + 178775436 --GAGGG
i papAnu2.chr5             T 79 C 0
s chlSab2.chr7             135191863 5 + 135778131 --GAGGG
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17770478 5 -  59632846 CTGTG--
i canFam3.chr16            C 0 I 197
e mm10.chr8                 87436458 3956 - 129401213 I
e calJac3.chr3             190342537 51 - 190850796 T
e rheMac3.chr5             183444132 0 + 184069350 C
e ponAbe2.chr4             197840212 86 + 198332218 T

a score=76702.000000
s hg38.chr4_KI270925v1_alt     38357 64 +    555799 TATCAGAAT-GGCATTATATAAACAAGAGAGCCTAGGGTGGAACAAAGTAGAATCTAGATGTTTT
s panTro4.chr4             192736464 64 + 193495092 TATCAGAAT-GGCATTATATAAACAAGAGAGCCTAGGGTGGAACAAAGTAGAATCTAGATGTTTT
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113611388 65 + 115148730 TATCAGAATGGGCACTATAAAAACAAGAGAGCCTAGGGTGGAACAAAGTAGAATCTAGATGTTTT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188823601 65 + 189454096 TATCAGAAAGGGCATGATATAAACAAGAGAACCTAGAGTGGAATAAAATAGAATCTAGATGTTTT
i macFas5.chr5             C 0 T 80
s papAnu2.chr5             178251740 65 + 178775436 TATCAGAAAGGGCATGATATAAACAAGAGAACCTAGAGTGGAATAAAATAGAATCGAGATGTTTT
i papAnu2.chr5             C 0 T 80
s chlSab2.chr7             135191868 65 + 135778131 TATCAGAAAGGGCATTATATAAACAAGAGAGCCTAGAGTGGAACAAAATAGAATCTAGATGTTTT
i chlSab2.chr7             C 0 T 80
e mm10.chr8                 87436458 3956 - 129401213 I
e canFam3.chr16             17770483 197 -  59632846 I
e calJac3.chr3             190342537 51 - 190850796 T
e rheMac3.chr5             183444132  0 + 184069350 C
e ponAbe2.chr4             197840212 86 + 198332218 T

a score=8437.000000
s hg38.chr4_KI270925v1_alt     38421 8 +    555799 GAAGGCTA
s panTro4.chr4             192736528 8 + 193495092 GAAGGCTA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113611453 8 + 115148730 GAAGGCAA
i nomLeu3.chr7b            C 0 T 160
s macFas5.chr5             188823586 8 + 189454096 GAAGGATA
i macFas5.chr5             T 80 C 0
s papAnu2.chr5             178251725 8 + 178775436 GAAGGATA
i papAnu2.chr5             T 80 C 0
s chlSab2.chr7             135191853 8 + 135778131 GAAGGATA
i chlSab2.chr7             T 80 C 0
e mm10.chr8                 87436458 3956 - 129401213 I
e canFam3.chr16             17770483 197 -  59632846 I
e calJac3.chr3             190342537 51 - 190850796 T
e rheMac3.chr5             183444132 0 + 184069350 C
e ponAbe2.chr4             197840212 86 + 198332218 T

a score=32113.000000
s hg38.chr4_KI270925v1_alt     38429 29 +    555799 AAGAGGGTATCAGAAT-GGCATTATATAAA
s panTro4.chr4             192736536 29 + 193495092 AAGAGGGTATCAGAAT-GGCATTATATAAA
i panTro4.chr4             C 0 I 237
s nomLeu3.chr7b            113611301 30 + 115148730 AAGCAGGTATCAGAATGGGCACTATATAAA
i nomLeu3.chr7b            T 160 C 0
s macFas5.chr5             188823594 30 + 189454096 AAGAGGGTATCAGAAAGGGCATGATATAAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178251733 30 + 178775436 AAGAGGGTATCAGAAAGGGCATGATATAAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135191861 30 + 135778131 AAGAGGGTATCAGAAAGGGCATTATATAAA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87436458 3956 - 129401213 I
e canFam3.chr16             17770483 197 -  59632846 I
e calJac3.chr3             190342537 51 - 190850796 T
e rheMac3.chr5             183444132  0 + 184069350 C
e ponAbe2.chr4             197840212 86 + 198332218 T

a score=52450.000000
s hg38.chr4_KI270925v1_alt     38458 42 +    555799 CAAGAGAGCCTAGGGTGGAACAAAGTAGAATCTAGATGTTTT
s panTro4.chr4             192736802 42 + 193495092 CAAGAGAGCCTAGGGTGGAACAAAGTAGAATCTAGATGTTTT
i panTro4.chr4             I 237 C 0
s nomLeu3.chr7b            113611331 42 + 115148730 CAAGACAGCCTAGGGTGGAACAAAGTAGAATCCAGATGTTTT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188823624 42 + 189454096 CAAGAGAACCTAGAGTGGAATAAAATAGAATCTAGATGTTTT
i macFas5.chr5             C 0 T 80
s papAnu2.chr5             178251763 42 + 178775436 CAAGAGAACCTAGAGTGGAATAAAATAGAATCGAGATGTTTT
i papAnu2.chr5             C 0 T 80
s chlSab2.chr7             135191891 42 + 135778131 CAAGAGAGCCTAGAGTGGAACAAAATAGAATCTAGATGTTTT
i chlSab2.chr7             C 0 T 80
e mm10.chr8                 87436458 3956 - 129401213 I
e canFam3.chr16             17770483 197 -  59632846 I
e calJac3.chr3             190342537 51 - 190850796 T
e rheMac3.chr5             183444132  0 + 184069350 C
e ponAbe2.chr4             197840212 86 + 198332218 T

a score=148174.000000
s hg38.chr4_KI270925v1_alt     38500 85 +    555799 GAAGGCTAAAGAGGGTATCAGAAT-GGCATTATATAAACAAGAGAGCCTAGGGTGGAACAAAATAGAATCTAGATGTTTTGAAGGC
s panTro4.chr4             192736844 85 + 193495092 GAAGGCTAAAGAGGGTATCAGAAT-GGCATTATATAAACAAGAGAGCCTAGGGTGGAACAAAGTAGAATCTAGATGTTTTGAAGGC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197840126 86 + 198332218 GAAGGATAAAGAGGGTATCAGAATGGGCATTATAGAAACAAGAGAGCCTAGGGTGGAACAAAATAGAATCTAGACGTTTTGAAGGC
i ponAbe2.chr4             T 86 T 59
s nomLeu3.chr7b            113611373 86 + 115148730 GAAGGATAAAGAGGGTATCAGAATGGGCACTATAAAAACAAGAGAGCCTAGGGTGGAACAAAGTAGAATCTAGATGTTTTGAAGGC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188823586 86 + 189454096 GAAGGATAAAGAGGGTATCAGAAAGGGCATGATATAAACAAGAGAACCTAGAGTGGAATAAAATAGAATCTAGATGTTTTGAAGGC
i macFas5.chr5             T 80 C 0
s papAnu2.chr5             178251725 86 + 178775436 GAAGGATAAAGAGGGTATCAGAAAGGGCATGATATAAACAAGAGAACCTAGAGTGGAATAAAATAGAATCGAGATGTTTTGAAGGC
i papAnu2.chr5             T 80 C 0
s chlSab2.chr7             135191853 86 + 135778131 GAAGGATAAAGAGGGTATCAGAAAGGGCATTATATAAACAAGAGAGCCTAGAGTGGAACAAAATAGAATCTAGATGTTTTGAAGGC
i chlSab2.chr7             T 80 T 61
e mm10.chr8                 87436458 3956 - 129401213 I
e canFam3.chr16             17770483 197 -  59632846 I
e calJac3.chr3             190342537 51 - 190850796 T
e rheMac3.chr5             183444132  0 + 184069350 C

a score=-336.000000
s hg38.chr4_KI270925v1_alt     38585 4 +    555799 TAAA-
s panTro4.chr4             192736929 4 + 193495092 TAAA-
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113611459 3 + 115148730 -AAG-
i nomLeu3.chr7b            C 0 T 79
s macFas5.chr5             188823672 4 + 189454096 -AAAA
i macFas5.chr5             C 0 T 80
s papAnu2.chr5             178251811 4 + 178775436 -AAAA
i papAnu2.chr5             C 0 T 80
e mm10.chr8                 87436458 3956 - 129401213 I
e canFam3.chr16             17770483 197 -  59632846 I
e calJac3.chr3             190342537 51 - 190850796 T
e chlSab2.chr7             135191939 61 + 135778131 T
e rheMac3.chr5             183444132 0 + 184069350 C
e ponAbe2.chr4             197840212 59 + 198332218 T

a score=61789.000000
s hg38.chr4_KI270925v1_alt     38589 79 +    555799 GAGGGTATCAGAAT-GGCATTATATAAACAAGAGAGGCTAGGGTGGAACAAAGTAGAATCTAGATGTTTTGAAGGCTAAA
s panTro4.chr4             192736933 79 + 193495092 GAGGGTATCAGAAT-GGCATTATATAAACAAGAGAGCCTAGGGTGGAACAAAGTAGAATCTAGATGTTTTGAAGGCTAAA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113611383 80 + 115148730 GAGGGTATCAGAATGGGCACTATAAAAACAAGAGAGCCTAGGGTGGAACAAAGTAGAATCTAGATGTTTTGAAGGCAAGA
i nomLeu3.chr7b            T 79 T 223
s macFas5.chr5             188823596 80 + 189454096 GAGGGTATCAGAAAGGGCATGATATAAACAAGAGAACCTAGAGTGGAATAAAATAGAATCTAGATGTTTTGAAGGCAAAA
i macFas5.chr5             T 80 T 1
s papAnu2.chr5             178251735 80 + 178775436 GAGGGTATCAGAAAGGGCATGATATAAACAAGAGAACCTAGAGTGGAATAAAATAGAATCGAGATGTTTTGAAGGCAAAA
i papAnu2.chr5             T 80 T 1
e mm10.chr8                 87436458 3956 - 129401213 I
e canFam3.chr16             17770483 197 -  59632846 I
e calJac3.chr3             190342537 51 - 190850796 T
e chlSab2.chr7             135191939 61 + 135778131 T
e rheMac3.chr5             183444132  0 + 184069350 C
e ponAbe2.chr4             197840212 59 + 198332218 T

a score=491.000000
s hg38.chr4_KI270925v1_alt     38668 5 +    555799 GAGGG
s panTro4.chr4             192737012 5 + 193495092 GAGGG
i panTro4.chr4             C 0 C 0
e mm10.chr8                 87436458 3956 - 129401213 I
e canFam3.chr16             17770483 197 -  59632846 I
e calJac3.chr3             190342537 51 - 190850796 T
e chlSab2.chr7             135191939 61 + 135778131 T
e papAnu2.chr5             178251815 1 + 178775436 T
e macFas5.chr5             188823676 1 + 189454096 T
e rheMac3.chr5             183444132 0 + 184069350 C
e nomLeu3.chr7b            113611463 223 + 115148730 T
e ponAbe2.chr4             197840212 59 + 198332218 T

a score=2511.000000
s hg38.chr4_KI270925v1_alt     38673 9 +    555799 TATCAGAAT
s panTro4.chr4             192737017 9 + 193495092 TATCAGAAT
i panTro4.chr4             C 0 C 0
s calJac3.chr3             190342486 9 - 190850796 TATCAGAAT
i calJac3.chr3             T 51 C 0
e mm10.chr8                 87436458 3956 - 129401213 I
e canFam3.chr16             17770483 197 -  59632846 I
e chlSab2.chr7             135191939 61 + 135778131 T
e papAnu2.chr5             178251815 1 + 178775436 T
e macFas5.chr5             188823676 1 + 189454096 T
e rheMac3.chr5             183444132 0 + 184069350 C
e nomLeu3.chr7b            113611463 223 + 115148730 T
e ponAbe2.chr4             197840212 59 + 198332218 T

a score=1356.000000
s hg38.chr4_KI270925v1_alt     38682 2 +    555799 -GG
s panTro4.chr4             192737026 2 + 193495092 -GG
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183444132 2 + 184069350 -GG
i rheMac3.chr5             C 0 C 0
s chlSab2.chr7             135191878 2 + 135778131 -GG
i chlSab2.chr7             T 61 C 0
s calJac3.chr3             190342495 3 - 190850796 GAG
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87436458 3956 - 129401213 I
e canFam3.chr16             17770483 197 -  59632846 I
e papAnu2.chr5             178251815 1 + 178775436 T
e macFas5.chr5             188823676 1 + 189454096 T
e nomLeu3.chr7b            113611463 223 + 115148730 T
e ponAbe2.chr4             197840212 59 + 198332218 T

a score=65552.000000
s hg38.chr4_KI270925v1_alt     38684 39 +    555799 CATTATATAAACAAGAGAGCCTAGGGTGGAACAAAATAG
s panTro4.chr4             192737028 39 + 193495092 CATTATATAAACAAGAGAGCCTAGGGTGGAACAAAATAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197840153 39 + 198332218 CATTATAGAAACAAGAGAGCCTAGGGTGGAACAAAATAG
i ponAbe2.chr4             T 59 C 0
s nomLeu3.chr7b            113611240 39 + 115148730 GCTTATATAAACAAGAAAGCCTAGGGTGGAACAAAATAG
i nomLeu3.chr7b            T 223 C 0
s rheMac3.chr5             183444134 39 + 184069350 CATGATATAAACAAGAGAACCTAGAGTGGAATAAAATAG
i rheMac3.chr5             C 0 C 0
s chlSab2.chr7             135191880 39 + 135778131 CATTATATAAACAAGAGAGCCTAGAGTGGAACAAAATAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190342498 39 - 190850796 CATTATATAAACAAGGGAGCCTAGAGTGGGAAAAAATAG
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87436458 3956 - 129401213 I
e canFam3.chr16             17770483 197 -  59632846 I
e papAnu2.chr5             178251815  1 + 178775436 T
e macFas5.chr5             188823676  1 + 189454096 T

a score=2730.000000
s hg38.chr4_KI270925v1_alt     38723 2 +    555799 AA
s panTro4.chr4             192737067 2 + 193495092 AA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197840192 2 + 198332218 AA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113611279 2 + 115148730 AA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183444173 2 + 184069350 AA
i rheMac3.chr5             C 0 C 0
s chlSab2.chr7             135191919 2 + 135778131 AA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87436458 3956 - 129401213 I
e canFam3.chr16             17770483 197 -  59632846 I
e calJac3.chr3             190342537 0 - 190850796 C
e papAnu2.chr5             178251815 1 + 178775436 T
e macFas5.chr5             188823676 1 + 189454096 T

a score=29164.000000
s hg38.chr4_KI270925v1_alt     38725 17 +    555799 TCTAGATGTTTTGAAGG
s panTro4.chr4             192737069 17 + 193495092 TCTAGATGTTTTGAAGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197840194 17 + 198332218 TCTAGACGTTTTGAAGG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113611281 17 + 115148730 TCTAGATGTTTTGAAGG
i nomLeu3.chr7b            C 0 I 163
s rheMac3.chr5             183444175 17 + 184069350 TCTAGATGTTTTGAAGG
i rheMac3.chr5             C 0 C 0
s chlSab2.chr7             135191921 17 + 135778131 TCTAGATGTTTTGAAGG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190342537 17 - 190850796 TCTAGACTTTGCGAAGG
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87436458 3956 - 129401213 I
e canFam3.chr16             17770483 197 -  59632846 I
e papAnu2.chr5             178251815  1 + 178775436 T
e macFas5.chr5             188823676  1 + 189454096 T

a score=2599.000000
s hg38.chr4_KI270925v1_alt     38742 3 +    555799 CAC
s panTro4.chr4             192737086 3 + 193495092 CAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197840211 3 + 198332218 CAA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183444192 3 + 184069350 CAA
i rheMac3.chr5             C 0 C 0
s chlSab2.chr7             135191938 3 + 135778131 CAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190342554 3 - 190850796 CAA
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87436458 3956 - 129401213 I
e canFam3.chr16             17770483 197 -  59632846 I
e papAnu2.chr5             178251815 1 + 178775436 T
e macFas5.chr5             188823676 1 + 189454096 T
e nomLeu3.chr7b            113611298 163 + 115148730 I

a score=-2466.000000
s hg38.chr4_KI270925v1_alt     38745 1 +    555799 -G
s panTro4.chr4             192737089 1 + 193495092 -A
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197840214 1 + 198332218 -G
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113611461 1 + 115148730 -G
i nomLeu3.chr7b            I 163 C 0
s rheMac3.chr5             183444195 1 + 184069350 -A
i rheMac3.chr5             C 0 C 0
s chlSab2.chr7             135191941 1 + 135778131 -A
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190342557 1 - 190850796 C-
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87436458 3956 - 129401213 I
e canFam3.chr16             17770483 197 -  59632846 I
e papAnu2.chr5             178251815 1 + 178775436 T
e macFas5.chr5             188823676 1 + 189454096 T

a score=24471.000000
s hg38.chr4_KI270925v1_alt     38746 8 +    555799 ATTATTGG
s panTro4.chr4             192737090 8 + 193495092 ATTATTGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197840215 8 + 198332218 ATTATTGG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113611462 8 + 115148730 ATTATTGG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183444196 8 + 184069350 ATTATTGA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188823675 8 + 189454096 ATTATTGA
i macFas5.chr5             T 1 C 0
s papAnu2.chr5             178251814 8 + 178775436 ATTATTGA
i papAnu2.chr5             T 1 C 0
s chlSab2.chr7             135191942 8 + 135778131 ATTATTGG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190342558 8 - 190850796 ATTATTGG
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87436458 3956 - 129401213 I
e canFam3.chr16             17770483 197 -  59632846 I

a score=453078.000000
s hg38.chr4_KI270925v1_alt     38754 145 +    555799 TATAATCATTTTTCAGGTCACTTGCACATAAATCTCAATAGAAATGGTCACAAAGCAGTGGG--------------TGCTGACTGACAATACATGGGCTCTAGGAGTGAAGCAATGAGAGGAGAAACATCACTAGTAAGAGTTTTATTTGCTTTTACAA
s panTro4.chr4             192737098 145 + 193495092 TATAATCATTTTTCAGGTCACTTGCACATAAATCTCAATAGAAATGGTCACAAAGCAGTGGG--------------TGCTGACTGACAATACATGGGCTCTATGAGTGAAGCAATGAGAGGAAAAACATCACTAGTAAGAGTTTTATTTGCTTTTACAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197840223 145 + 198332218 TATAATCATTTTTCAGGCCACTTGCCCATAAATCTCAATAGAAATGGTCACAAAGCAGTAGG--------------TGCCAACTGACAATACATGGGCTCTAGGAGTGAAGCAATGAGAGGAGAAACATCCCTAGTAAGAGTTTTATTTGCTTTTACAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113611470 145 + 115148730 TATAATCATTTTTCAGGTCACTTGCACATAAATCTCAATAGAAATGGTCACAAAGCAGTGGG--------------TGCCGACTGACAATACATGGGCTCTAGGAGTGAAGCAATGAGAGGAGAAACATCACTAGTAAGAGTTTTATTTTCTTTTACAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183444204 145 + 184069350 TGTACTCATTTTTCAGATCACTTGCACATAAATCTCAATAGAAATGCTCACAAAACTGTGGG--------------TGCTGACTGACAATACATGGGCTCTACGAGTGAAGCAATGAGAGGAGAAACATCACTAGTAAGAGTTTTATTTGATTTTACAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188823683 145 + 189454096 TGTACTCATTTTTCAGGTCACTTGCACATAAATCTCAATAGAAATGCTCACAAAACAGTGGG--------------TGCTGACTGACAATACATGGGCTCTACGAGTGAAGCAATGAGAGGAGAAACATCACTAGTAAGAGTTTTATTTGCTTTTACAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178251822 145 + 178775436 TGTACTCATTTTTCAGGTCACTTGCACATAAATCTCAATAGAAATGCTCACAGAACAGTGGG--------------TGCTGACTGACAATATGTGGGCTCTATGAGTGAAGCAATGAGAGGAGAAACATCACTAGTAagagttttatttgcttttacaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135191950 145 + 135778131 TGTACTCATTTTTCAGGTCACTTGCACATAAATCTCAATAGAAATGCTCATGAAACAGTGTG--------------TGCTGACTGACAATATGTGGGCTCTATGAGTGAAGCAATGAGAGGAGAAACATCACTAGTAAGAGTTTTATTTGCTTTTACAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190342566 144 - 190850796 CATACTTATTTTTCAGGTCACTGGCAC-TTAATCTCAACAGAAATGCTCATAAAACAGGGGG-------------TTGCTGATTGACAATA-ATGAACTTGAGGAGTGAAGGAATGAGAGGAGAAACATCGCCAGTGCAACTTTTATTTGCTTTTATAA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17770680 157 -  59632846 TATACTCTCTCTTTAGGCTACTCTCAGGTAGGTCTCAGTAGAAGAACTCACAGAGTAGTGAGAACTCAATAAATGTCACTGATCAGCAGTAAGTAGGCCCTATGTGTGTGAACATTAGAAGAGACATATCACCAATACG--TTTTATTTAGTTTCATAA
i canFam3.chr16            I 197 C 0
e mm10.chr8                 87436458 3956 - 129401213 I

a score=216973.000000
s hg38.chr4_KI270925v1_alt     38899 247 +    555799 TATTCTGTGAGAGAATTTTTTCCCCTTTGGCCATGGGT----TTAGCATGTACATTTCAAAGG-TGTCTGTTAAAATGACAGAGTTGGCTTATTTTTT--CTCTATTAGCCAAAGACACATTATAGTGGTTGTTTTT------------TGAAATTTATCAACCTGAGCTTGTATTTTTACTTTAAAGATAAATGAGGAACTTTTAATTTGGTAATA----AGGGTACT--GCTCAAATATACCTAGGC-AAAAAACAGTTGTTCTATGGATT
s panTro4.chr4             192737243 247 + 193495092 TATTCTGTGAGAGAATTTTTTCCCCTTTGGCCATGGGT----TTAGCATGTACATTTCAAAGG-TGTCTGTTAAAATGACAGAGTTGGCTTATTTTTT--CTCTATTAGCCAAAGACACATTATAGTGGTTGTTTTT------------TGAAATTTATCAACCTGAGCTTGTATTTTTACTTTAAAGATAATTGAGGAACTTTTAATTTGGTAATA----AGGGTACT--GCTCAAATATACCTAGGC-AAAAAGCAGTTGTTCTATGGATT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197840368 248 + 198332218 TATTCTGTGAGAGAACTTTTTCCCCTTTGGCCATGGGT----TTAGCATGTACATTTCAAAGGTTGTCTGTTAAAATGACAGAGTTGGCTTATTTTTT--CCCTATGAGCCGAAGACACATTAGAGTGGTCGTTTTT------------TGAAATTTATCAACTTGAGCGTGCATTTTTACTTTAAAGATAAATTAAGAACTTTTAATTTGGTAATA----GGGGTACT--GCTCAAATATACCTATGC-AAAAAGCAGTTGTTCTATGGATT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113611615 247 + 115148730 TATTCTGTGAGAAAACTTTTTCCCCTTTGGCCATGGGT----TTAGCATGTACATTTCAAAGGTTGTCTGTTAAAATGACAGAATTGGCTTATTTTTT--CCCTATTAGCCTAAGACACATTATAGTGGTCG-TTTT------------TGAAATTTATCAACCTGAGCGTCTATTTTTGCTTTAGAGATGAATTAGGAGCTTTTAATTTGGTAATA----AGGGTATT--GCTCACATATACCTATGC-GAAAAGCAGTTGTTCTATAGATT
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190342710 261 - 190850796 TAGTCTGTGAGAGAAC-CTTCCCCTCTGGGCCGTGGGTTTAGTTAGCATATACATTTCAAAAG-TGTCCGTTAAAATGACAGACGTGGCTTATTTTTT--CCTTGTTAGCCCAAGACCCATTATAGTGGTCTTTTTTTTT------TTCTTAAATTTATCAACCTGAGAGTCTATTTCTGCTTTAAAGACAAATTAGGAGCTTTTAACTTGATAATAGAGGAAGGTACT--GTACAAATATACCTATACAAAAAAGCAGGTGTTCTACAGATT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17770837 258 -  59632846 TATTTCATGGAAGAACTTTTTTC---TTGGCCAAGGGT----ATACTATATACATTTCAAAGGTTGGCTACTAAAATAATAGACGTGGCTTATTCTTTTGTTCTATCAGACTAGATCACTTTATAATGGTTTTTTGTTTTGCTTTGTTTTTGTTTTTATCAA--TGAGAGGCTTCAGCTGCCTTAAAGCATAATTAAGGGCTTCT-ATTTGGAAATA----AGAGTATTTAGGCCAAATATACCTACAT-AAAAACCAGACAGTCTATAGATT
i canFam3.chr16            C 0 I 2367
e mm10.chr8                 87436458 3956 - 129401213 I
e chlSab2.chr7             135192095   0 + 135778131 C
e papAnu2.chr5             178251967   0 + 178775436 C
e macFas5.chr5             188823828   0 + 189454096 C
e rheMac3.chr5             183444349   0 + 184069350 C

a score=67299.000000
s hg38.chr4_KI270925v1_alt     39146 101 +    555799 TAAGAATGAATACTATCACAAATAATAAATCAAGGAGACTAACTCTTAAATAAGATACAGTTTGCATTTTCTCGCCTAAGAAAGCA-TTTTTT--------AAAATTAGT
s panTro4.chr4             192737490 101 + 193495092 TAAGAATGAATACTATCACAAATAATAAATCAAGGAGACTAACTCTTAAATAAGATACAGTTTGCATTTTCTCGCCTAAGAAAGCA-TTTTTT--------AAAATTAGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197840616 102 + 198332218 TAAGAATCAATACCATCACAAATAATAAATCAAGGAGACTAACTCTTAAATAAGATACAGTTTGTATTTTCTCGCCTAAGAAACTGTTTTTTT--------TAAATTAGT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113611862 100 + 115148730 TAAGAACAAATACTATCA-AAATAATAAATCAAGGAGACTAACTCTTAAATAAGATACAGTTTGCGTTTTCTCACCTAAGAAAGTG-TTTTTT--------TAAATTAGT
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190342971  82 - 190850796 TAAGA------ACTATTACAAATAACAAATCAAG------------TAACTATGACATGATTAGCATTTTTTCTACTACAAAAACG--TCTCT--------GAAATCAGT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17773462 104 -  59632846 taaaaATCAGTAGTCTGACAAATAATAAATCAGGAAGATTCATCCTTGAA-AGGGCTCGGTTTAGGTTTTCCAAAGTAAGAAAACT-----TTAAAAAAAAAAAACTAAT
i canFam3.chr16            I 2367 C 0
e mm10.chr8                 87436458 3956 - 129401213 I
e chlSab2.chr7             135192095   0 + 135778131 C
e papAnu2.chr5             178251967   0 + 178775436 C
e macFas5.chr5             188823828   0 + 189454096 C
e rheMac3.chr5             183444349   0 + 184069350 C

a score=335041.000000
s hg38.chr4_KI270925v1_alt     39247 337 +    555799 ACAAGCCTAAGTCTTGGTG-TTATTTGTTTGCTCTCGTTCATAATAGGATTGCTTTATAATTATTT--AGTTTTTTAAAGTGT--GTCTATTATTCTAAAAACTTATAGTCCTGAGTGTCTTAATTTTTTCTAGAAAAA---------------TTTGCAATAGCTATTTCTGGCCATTGTTAGTAGGTTCAAACTGATTATGTAACTAAAGTGCTTCCACCATGAAAAAAGTGGTACATT----ACATTTTCTATAGAGTCTTTCATAATTCATCCCGATCAAAGCAGTGAGCTGAACTGAGACCATAAACAGCTCACAAATGTTTCAC------AACATAATCAATGAAGTACCAATGATATCTC
s panTro4.chr4             192737591 336 + 193495092 ACAAGCCTAAGTCTTGGTG-TTATTTGTTTGCTCTCGTTCATAATAGGATTGCTTTATAATTATTT--AGTTTTTTAAAGTGT--GTCTATTATTCTAAAAACTTATAGTCCTGAATGTCTTAATTTTTTCTAGAAAAA---------------TTTGCAATAGCTATTTCTGGCCATTGTTAGTAGGTTCAAACTGATTATGTAACTAAAGTGCTTCCACCATG-AAAAAGTGGTACATT----ACATTTTCTGTAGAGTCTTTCATAATTCATCCTGATCAAAGCAGTGAGCTGAACTGAGACCATAAACAGCTCACAAATGTTTCAC------AACATAATCAATGAAGTACCAATGATATCTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197840718 337 + 198332218 ACAAGCCTAAGTCTTGGTG-TTATTTGTTTGCTGTCGTTCATAATAGGATTGCTTTATAATTACTT--AATTTTTAAAAGTGT--GTCTATTATTCTAAAAACGTATAGTCCTGAATGTCTTAATTTTTTCTAGAAAAA---------------TTTGCAATAGCTATTTCTGGCCATTGTTAGTAAGTTCAAATTGATTATGTAAGTAAAGTGCTTCCACTATGAAAAAACTGGTACATT----ACATTTTCTATAGGGTCTTTCATAATTCATCCCGATCAAAGCAGTGAGCTGAACTGAGACCATAAACAGCCCACAAAGGTTTCAC------GACATAATCAGTGAAGTACTAATGATATCTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113611962 337 + 115148730 ACAAGCCTAAGTCTTGGTG-TTATTTGTTTGCTGTTGTTCATAATAGGATTGCTTTATAATTACTT--AGTTTTTTAAAGTGT--GTCTATTATTCTAAAAACTTATAGTCCTGAATGTCTTAATTTTTTCTAGAAAAA---------------TTTGCAATAGCTCTTTCTGGCCATTGTTAGTAGGTTCAAATTGATTATGTAACTAAAGTGCTTCCACTATGAAAAAGGTGGTACATT----ACATTTTCTATAGAGTCTTTCATAATTCATCCCGATCAAAGCAGTGAGCTGAACGGAGACCATAAACAGCCCACAAAAGTTTCAC------AACATAATCAATGAGGTACCAATGATATCTC
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190343053 339 - 190850796 GCCAGTGTAAGACTTGGTGTTTATTTGTTTTCTGTCTTTCATAATAGCATTGCTTTATCATTACATAAAAATTTTTAAAGTGT--GTCTGTTATTCCGCAAGCTTGTAGTTCTGAACATCTTAATTTTTTCTAG-AAAA---------------TTTGCAGTAGCTATTTCTGGCCATTATTAGTAGGTTCAAACTGATTGTGTAACTAATGTGCTTCCACTACTAAAAAAGTGGCATGTT----ATATTTTCTATGCAGTCTTTCATAATTCATCCTGATCAAAGCAGTGAGCTGAACTGAGACCATGAGGAGCTCAGAGAGGTTTCAC------AATTGAATCAATGAAGAACCAATGACATCTC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87440414 315 - 129401213 ACAAGCATACATTTTCATG-TTACCT-----CTCTTATGCAAAATA-TATTAC-TTACAATTGCTT--ATATTGAAAAGGCATCAGTTAATTATTTTGAAATGTTACAGTCCTAATTTTTTTTTATTGTTCCTATATAA---------------TTTGCAAT-----TTTTTGGCTACTTGTCAGAGTCACAATTTGATTGTAT---TTGAGAATTTCTACTC---AGAAAATAAAATGTT----ATCTTCCCATCAGGGCC----------CATCCTGACCAAAACAGTGAACCAAACTGGAGGGAGGAAGGGCTGTTTA--GGTTCACCTAGTAGATATCTTCCCTCTGGTACCATTTGTGTCTC
i mm10.chr8                I 3956 C 0
s canFam3.chr16             17773566 343 -  59632846 TCATGCATGAGTCATGGTG-TTATTAG---GCTTTCCCCCATAAAAGCACTGCTTTATAACTACTA--AA---TTAAAAA-----GCTAGTTATTCTAAAAACTTATAGTTTTGAATGTTTTAATTTTGTTAAGCAAAACTTTTTAACACAAATTTTGTTATAACTCTATCTGGCCATTTTTAATGGATATGAATTAA----GTAACCCAAATCCTTTTCATTAAAAACAAAAAAAATGTTGTGGGCATTCTCTATACAGAATTTCACAATTCACTGTGATTGAAGCCGTAAGTGGAGCTGAGAGCATGATGAGCCCACAGAAGTTTCAC------AAAGTAATCAATGAAGTACCAATGATAACTC
i canFam3.chr16            C 0 C 0
e chlSab2.chr7             135192095   0 + 135778131 C
e papAnu2.chr5             178251967   0 + 178775436 C
e macFas5.chr5             188823828   0 + 189454096 C
e rheMac3.chr5             183444349   0 + 184069350 C

a score=952311.000000
s hg38.chr4_KI270925v1_alt     39584 285 +    555799 AAAAATAGCTGCAAGGTTATCTGTAGTGCTTTATAGTTACAAATATGCTGTC-AAAATTAGATTTTCTTTCCTTTTCCTGAGTTTAGTAAGCACTTTTGTTTCTAGTCATTTAACCAACTCCTTTAGTTCTGGAGT--TCTATAAAGTTCACTCACAGAGGAA----TTGAACCATTGAT------GGGGGACTGACTGCTGGCTATACCTTCCTAAATATCATCTCTTTGCTAATC---ACCTCCTTACTAAATACTATAACAATCCTCAG---------------ATGCATATGCTTAAGGACAAATCTTAATT-
s panTro4.chr4             192737927 285 + 193495092 AAAAATAGCTGCAAGGTTATCTGTAGTGCTTTATAGTTACAAATATGCTGTC-AAAATTAGATTTTCTTTCCTTTTCCTGAGTTTAGTAAGCACTTTTGTTTCTAGTCATTTAACCAACTCCTTTAGTTCTGGAGT--TCTATAAAGTTCACTCACAGAGGAA----TTGAACCATTGAT------GGGGGACTGACTGCTGGCTATACCTTCCTAAATATCATCTCTTTGCTAATC---ACCTCCTTACTAAATACTATAACAATCCTCAG---------------ATGCATATGCTTAAGGACAAATCTTAATT-
i panTro4.chr4             C 0 I 482
s ponAbe2.chr4             197841055 285 + 198332218 AAAAATAGCTGCAAGGTTATCTGTCGTGCTTTATAGTTACAAATACACTGTC-ACAATTAGATTTTCTTTCCTTTTCTTGAGTTTAGTAAGCACTTTTGTTTCTAGTCATTTAACCAACTCCTTTAGTTCTGGAGT--TCTATAAAGTTCACTCACAGAGGAA----TTGAACCATTGAT------GGGGGACTGACTGCTGGCTATACCTTCCTAAATATCATCTCTTTACTAATC---ACCTCCTTACTAAATACTATAACAATCCTCAG---------------ATGCATATGCTTAAGGACAAATCTTAATT-
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113612299 285 + 115148730 AAAAATAGCTGCAAGGTTATCTGCAGTGCTTTATAGTTACAAATATGCTATC-AAAATTAGATTTTCTTTCCTTTTCTTGAGTTTAGTAAGCACTTTTGTTTCTAGTCATTTAACCAACTCCTTTAGGTCTGGAGT--TCTATAAAGTTCACTCACAGAGGAA----TTGAACCATTGAC------GGGGGACTGACTGCTGGCTATACCTTCCTAAATATCATCTCTTTGCTAATC---ACCTCCTTACTAAATACTATAACAATCCTCAG---------------ATGCATATGCTTAAGGACAAATCTTAATT-
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183444349 279 + 184069350 AAAAATACCTGCAAGGTTATCTGTAGTGCTTTATAATTACAAACACACTTTC-AAAATTAGATTTTCTTTCCTTTTCCTGAGTTTAGTAAGCACTTTCGTT-----TCAGTTAACCAACTCCTTTAGTTCTCGAGT--TCTATAAAGTTGACTCACAGAGGAA----TTAAACCCTTGAC------TGGGGACTGACTGCTGGCAATAGCTTCCTAAATATCATCTCCTTACTAATC---ACCTCCTTACTAAATACTATACCAAT-CTCAG---------------ATGCATATGTTTAAGGACAAATCTTAATT-
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188823828 284 + 189454096 AAAAATACCTGCAAGGTTATCTGTAGTGCTTTATAATTACAAACACACTTTC-AAAATTAGATTTTCTTTCCTTTTCCTGAGTTTAGTAAGCACTTTCGTTTCTGATCAGTTAACCAACTCCTTTAGTTCTCGAGT--TCTATAAAGTTGACTCACAGAGGAA----TTAAACCCTTGAC------TGGGGACTGACTGCTGGCAATAGCTTCCTAAATATCATCTCCTTACTAATC---ACCTCCTTACTAAATACTATACCAAT-CTCAG---------------ATGCATATGTTTAAGGACAAATCTTAATT-
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178251967 284 + 178775436 aaaaaTGCCTGCAAGGTTATCTGTAGTGCTTTATAATTACAAACACACTTTC-AAAattagattttctttccttttcctgagtTTAGTAAGCACTTTCGTTTCTGGTCATTTAACCAACTCCTTTAGTTCTCGAGT--TCTATAAAGTTGACTCACAGAGGAA----TTGAACCCTTGAC------TGGGGACTGACTGCTGGCAATAGCTTCCTAAATATCATCTCCTTACTAATC---ACCTCCTTACTAAATACTATACCAAT-CTCAG---------------ATGCATATGTTTAAGGACAAATCTTAATT-
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135192095 285 + 135778131 AAAAGTAGCTGCAAGGTTATCTGTAGTGCTTTATAATTACAAACACACTTTC-AAAATTAGATTTTCTTTCCTTTTCCTGAGTTTAGTAAGCACTTTCGTTTCTGGTCATTTAACCAACTCCTTTAGTTCTCGAGT--TCTATAAAGTTGACTCACAGAGGAA----TTGAACCCTTGAC------TGGGGACTGACTGCTGGCCATACCTTCCTAAATATCATCTCCTTACTAATC---ACCTCCTTACTAAATACTATACCAATCCTCAG---------------ATGCATATGTTTAAGGACAAATCTTAATT-
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190343392 283 - 190850796 -AAAAAACCTGCAAGGTTATCTGTAGTGCTTTATAGTTACAAACACGCTGTC-AAAATTAGATTTTCTTTCCTTTTCCTGAGGTGAGTAAGCACTTGTGTTTCTAGGCATTTAACCAACTCCTTTAGTTCTGGCGT--TCTATAAA-TTCACTCGTGGAGGAA----TTGAACCACTGAC------TGGACGCTGACTGCTGGCTATACCTTCTTACATATTACCTGCTTACTAATC---ACTCCCTTACTACATACTGTAACGATCCTCAG---------------ATGCATTTGCTTAAGGACAAATCTCAGTT-
i calJac3.chr3             C 0 I 1
s mm10.chr8                 87440729 269 - 129401213 AGAGGCACC-----------------AGCTTTGTACTCACAAACATGTCATC-AAAATATATTTCTCTTT--TTACCCTGAA--TATTAAG--TTGCTGTTTGTAGCTGCTTAATGGACCCTATTAGATCTGGAAT--TCTATAAAAGAAACATTTAGTGAAAAGTGTTTGAGCTTTGTT------TCAGTGTTGCCTGCTGGCCATGCCTGATGTCACACCACCTCTCCAACCATCACTACTTCCTTAGGAAATACCACAATAATCCCCAA---------------ATTTATATCCTTAAAAACAAGTCGCATGT-
i mm10.chr8                C 0 I 1
s canFam3.chr16             17773909 283 -  59632846 CAAAATAGCCACAAGTTTATCTGTGGGGCTTTATAGTTACAAATGTGCTGTCAAAAAATGGATTCTCTTT--TTTTCCTGAG--TATTAAGTA--TTGGTTTCTAGGTATTTAACTGACCCTTTTAGCTCTGCAGTTCTCTGTGTGTTTCATTCACAGAGAAA----CGGAATGGTTGACTTTCTTTAGG----GACTGTTACCCATACCTTA-----------------AGTTATC---ACTTCCTTATGAAATACTATAGTAATCCTCAAATTCTGCCCTGAGTCATTCATATACTTACAGACAAATGTTAATTT
i canFam3.chr16            C 0 C 0

a score=125239.000000
s hg38.chr4_KI270925v1_alt     39869 44 +    555799 TGCAGGACATTCTTCCCGCTGGTTGGTAATGCCCAAGTGGTCCT
s ponAbe2.chr4             197841340 44 + 198332218 TGCAGGACATTCTTCAAGCTGGTTGGTAATGCCCAAGTGGTCCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113612584 44 + 115148730 TGCAGGACATTCTTCAAGCTGGTTGGTAATGCCTAAGTGGTCCT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183444628 44 + 184069350 TGCAGAACATTTCTCAAGCTGGTTGGTAATGCCCAAGTGGTCCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188824112 44 + 189454096 TGCAGAACATTTCTCAAGCTGGTTGGTAATGCCCAAGTGGTCCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178252251 44 + 178775436 TGCAGAACATTTCTCAAGCTGGTTGGTAATGCCCAAGTGGTCCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135192380 44 + 135778131 TGCAGAATATTTCTCAAGCTGGTTGGTAATGCCCAAGTGGTCCT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190343676 44 - 190850796 TGTAGGACATTCCTCAAGCTGGTTGGTAATGCCCAAGGGGTCCT
i calJac3.chr3             I 1 C 0
s mm10.chr8                 87440999 39 - 129401213 TGCATGATATCCCTCAGGCTGAGTGG-AATGCCTTA----TGCT
i mm10.chr8                I 1 I 2
s canFam3.chr16             17774192 41 -  59632846 TATGCGACATTCCTCAGGCTGTTTGGTGATAACCAAATGGT---
i canFam3.chr16            C 0 C 0
e panTro4.chr4             192738212 482 + 193495092 I

a score=445263.000000
s hg38.chr4_KI270925v1_alt     39913 150 +    555799 TCTTTAGGCTGAGCAGTGTTAGATGTTCATGATTACCATTTCCACTCTTTTGTTGCTGTGGTTAAAATAAAAATAAAAATAAACGTATATAAGGTGTTTTGC-TTT---------CTT-------TGAGTCAAATAATTTTGGTTCAAATAAAGAAGACATAAGAAA
s panTro4.chr4             192738694 148 + 193495092 TCTTTAGGCTGAGCAGTGTTAGATGTTCATGATTACCATTTCCACTCTTT-GTTGCTGTGGTTaaaataaaaataaaaataaaCGTATATAAGGTGTTTTGC-TTT---------CTT-------TGAGTCAAATAATTTTGGTTCAAA-AAAGAAGACATAAGAAA
i panTro4.chr4             I 482 C 0
s ponAbe2.chr4             197841384 144 + 198332218 TCTTTAGGCTGAGCAGTGTTAGATGTTCATGATTACCATTTCCACCCTTTTGTTGCTGTGGTTAAAATAAAAATAAAA------GTATATAAGGTGTTTTGC-TTT---------CTT-------TGAGTCAAATAATTTTAGTTCAAATAAAGAAGACATAAGAAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113612628 149 + 115148730 TCTTTAGGCTGAGCAGTGTTAGATGTTCATGATTACTGTTTCCACCCTTTTG-TGCTTTGGTTAAAATAAAAATAAAAATAAACGTATATAAGGTGTTTTGC-TTT---------CTT-------GGAGTCAAATAATTTTAGTTCAAATAAAGAAGACATAAGAAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183444672 144 + 184069350 CCTTTCGGCTGAGCAGTGTTAGATGTTCATGATTACCATTTCTACTCTTTTGTTGCTGTGGTTAAAATAAAAATAAAC------GTATACAAGGTGTTTTGC-TTT---------CTT-------TGAGTCAAATAATTTTAGTTCAAATAAAGAAGACGTAAGGAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188824156 144 + 189454096 CCTTTCGGCTGAGCAGTGTTAGATGTTCATGATTACCATTTCTACTCTTTTGTTGCTGTGGTTAAAATAAAAATAAAC------GTATACAAGGTGTTTTGC-TTT---------CTT-------TGAGTCAAATAATTTTAGTTCAAATAAAGAAGACGTAAGGAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178252295 144 + 178775436 CCTTTCGGCTGAGCAGTGTTAGATGTTCATGATTACCATTTCTACTCTTTTGTTGCtgtggttaaaataaaaataaac------gtgTACAAggtgttttgc-ttt---------ctt-------tgagtCAAATAATTTTAGTTCAAATAAAGAAGACGTAAGGAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135192424 144 + 135778131 CCTTTAGGCTGAGCAGTGTTAGCTGTTCATGATTACCATTTCTACTCCTTTGTTGCTGTGGTTAAAATAAAAATAAAT------GTATACAAGGTGTTTTGC-TTT---------CTT-------TGAGTCAAATAATTTTAGTTCAAATAAAGAAGATATAAGGAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190343720 156 - 190850796 CCTTTAGGAAGAGCAGTGTTCGATGTTCATGATTACCATTTCCACTCTTTTGTTGCTGTAATTAAAATACAAATACAAATAAACACATGTTAGGTGTTTTGC-TTTCTTTGCAAACTT-------TGAGCCGAATAATTTTAGTTCAAAT---GAAGACATAAGAAA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87441040 119 - 129401213 GTTTTGGACTGACTAGAGCCAAATA---------ACTGTTTCTACTATTTTCTTA--------AAAATGGAGAAA---------TTGTATGTGTTGTTTCAC-TGG-----TAAACAT-------CCAGTTAAATGCTTTTATTCAAAATCAAGATGA---------
i mm10.chr8                I 2 C 0
s canFam3.chr16             17774233 140 -  59632846 TCTTTGGTTTTAGCAGTGTTAGGTCATCATGATGACAATTTCCACATTTTT----------TTAAATTAAAGAAAC--------TTGTACAATGTGTTTTGCATTT---------CTTGCAAATGTGAGTCACGCACTTTAAGTTAAAATAAGGAAGACACAAggga
i canFam3.chr16            C 0 I 520

a score=336416.000000
s hg38.chr4_KI270925v1_alt     40063 121 +    555799 AGCTAAC-GATTTACATCAGTGATTAAACCCTTAGATGAACTTGTAAT----TAAGCTTAGAAATGAGGTAAATTTAGAATTAGGGAAGCAATAATAGTGTAACTTTATATTGGACTAAA-GTTAAG
s panTro4.chr4             192738842 121 + 193495092 AGCTAAC-GATTTGCATCAGTGATTAAACCCTTAGATGAACTTGTAAT----TAAGCTTAGAAATGAGGTAAATTTAGAATTAGGGAAGCAATAATAGTGTAACTTTATATTGGACTAAA-GTTAAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197841528 118 + 198332218 AGCTAAC-AATTTGCATCAGTGATTAAACCCTTAGATGAACTTGTAATTAACTAAGCTTAGAAATGAGGTAAAT------TTAGGGAAGCAA-GATAGTGTAACTTTATATTGGACTAAA-GTCAAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113612777 124 + 115148730 AGCTAAC-GATTTGCATCAGTGATTAAACCCTTAGATGAACTTGTAATTAACTAAGCTTAGAAATGAGGTAAATTTAGAATCAGGGAAGCAA-GACAGTGTAACTTTATATTGGACTAAA-GTCAAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183444816 125 + 184069350 AGCTAACTGATTTGCATCAATGATTAAACCCTCAGATGAACTTGTGATTAACTCAGCTTAGAAGTGAGGTAAATTTAGAATTAGGGAAGCAA-GATAGTGTAAATTTATATTGGACTAAA-GTCAAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188824300 125 + 189454096 AGCTAACTGATTTGCATCAATGATTAAACCCTCAGATGAACTTGTGATTAACTCAGCTTAGAAGTGAGGTAAATTTAGAATTAGGGAAGCAA-GATAGTGTAAATTTATATTGGACTAAA-GTCAAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178252439 125 + 178775436 AGCTAACTGATTTGCATCAATGATTAAACCCTCAGATGAACTTGTGATTAACTCAGCTTAGAAGTGAGGTAAATTTAGAATTAGCGAAGCAA-GATAGTGTAAATTTATATTGGACTAAA-GTCAAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135192568 125 + 135778131 AGCTAACTGATTTGCATCGGTGATTAAACCCTCAGATGAACTTGTGATTAACTCAGCTTAGAAGTGAGGTAAATTTAGACTTAGGGAAGCAA-GATAGTGTAAATTTATATTGGACTAAA-GTCAAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190343876 126 - 190850796 AGCTAACTGATCCATGTCAGTGATTAAACCCTCAGATGAACTTGTGATTAAGTAAGGTTAGAATTGAGGTAAACTTAGAATTAGGAAAGCAA-GATAGTGTAAACTTATATTTGACTAAAGGCCAAG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87441159  90 - 129401213 -----------TTGTATCAGCAGGCAAACCCT----------------------AACTCTCATGGGGGTGAATTTTAGAATTAGAGATACAT-GATGCTGTCA-CTTACATT-GACTGGG-ACAGGG
i mm10.chr8                C 0 C 0
e canFam3.chr16             17774373 520 -  59632846 I

a score=600826.000000
s hg38.chr4_KI270925v1_alt     40184 170 +    555799 TGATATTTTATAT---AAATGTAACTGATAGAACTGGTTAAGACTACTCACCTTAATCAACTATAAATCAGAGAAAGCATACCCTAGCTATGGAACATAATGCAAT-CAAATGTATAGATTCATTGTTTCAAACTTGG-ATTTGCCATGCAGATGTTTTTCATTAGAAAG--GTTTC
s panTro4.chr4             192738963 170 + 193495092 TGATATTTTATAT---AAATGTAACTGATAGAACTGGTTAAGACTACTCACCTTAATCAACTATAAATCAGAGAAAGCATACCCTAGCTATGGAACATAATGCAAT-CAAATGTATAGATTCATTGTTTCAAACTTGG-ATTTGCCATGCAGATGTTTTTCATTAGAAAG--GTTTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197841646 170 + 198332218 TGATATTTTATAT---AAATGTAACTGATAGAACTGGTTAAGACTACTCATCTTAATCAACTATAAATCAGAGAAAGCATACCCTAGCTATGGAACATAATGCAAT-CAAATGTGCAGATTCATTGTTTCAAACTTGG-ATTTGCAGTGCAGATGTTTCTCATTAGAAAG--GTTTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113612901 170 + 115148730 TGATATTTTATAT---AAATGTAGCTGATAGAACTGGTTAAGACTAGTCACCTTTATCAACTATAAATCAGAGACAGCATACCCTAGCTATGGAACATGATGTAAT-CAAATGTATAGATTCATTGTTTCAAACTTGG-ATTTGCCATGCTGATGTTTCTCATTAGAAAG--GTTTC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183444941 170 + 184069350 TGATGTTTTATAT---AAATGTGACTGATAGAACTGGTTAAGACTATTTACCTTAATCAACTGTAAGTCAGAGAAAGCATACCCTAGTTATGGAACATAATGCAAT-CAAATGTATAGATTCATTGTTTCACTTTTGG-ATTTGCCATGCAGATGTTTCTCATTAGAAAG--GTTTC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188824425 170 + 189454096 TGATGTTTTATAT---AAATGTGACTGATAGAACTGGTTAAGACTATTTACCTTAATCAACTGTAAGTCAGAGAAAGCATACCCTAGTTATGGAACATAATGCAAT-CAAATGTATAGATTCATTGTTTCACTTTTGG-ATTTGCCATGCAGATGTTTCTCATTAGAAAG--GTTTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178252564 170 + 178775436 tgatgttttatat---aaatgtgaCTGATAGAACTGGTTAAGACTCTTTACCTTAATCAACTGTAAGTCAGAGAAAGCATACCCTAGTTATGGAACATAATGCAAT-CAAATGTATAGATTCATTGTTTCACATTTGG-ATTTGCCATGCAGATGTTTCTCATTAGAAAG--GTTTC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135192693 170 + 135778131 TGATGTTTTATAT---AAATGTGACTGATAGAACTGGTTAAGACTATTCACCTTAATCAACTGTAAGTCAGAGAAAGCATACCCTAGTTATGGAACATAATGCAAT-CAAATGTATAGATTCATTGTTTCACATTTGG-ATTTGTCATGCAGATGTTTCTCATTAGAAAG--GTTTC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190344002 170 - 190850796 TGATATTTTATAT---AAATGTGACTGATAGAACTGGTTAAGACCACTCACCTCAATCACCTGTAAATCAGAGAAAGCATACCCTAGCTATGAAATATAATGCAAT-CAAATGTATAGATTAATTGTTTCAAACTTGT-ATTTGCCATGCAGATGTTTCCTGTTAGAACG--GTTTC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87441249 153 - 129401213 TAGTGCTTTGT-------GTTTCACTGAGAACACTGGCTAAGAGCATTCATTTTAATCA----CAAGCCAGAAGACATGTACCCAATCTCTGAAACA----------CAAACCTACACATTTACTACATCAAACGTGGCATTTG--ATACA-ATAATTCCCTTGAAAAAGGAGTTTC
i mm10.chr8                C 0 C 0
s canFam3.chr16             17774893 175 -  59632846 TGATGCTTTGTTTTTAAAGCATCATTTGTAACACCAGTTAAGACCACTCACCATAATCAACTACAAATTAGAGAAAAATTACCCTAGGTCTGAAACACAATGAAATCCAAATAGGCAAATGTATTATTCCAAACCTGGCATTTGCCAGACCAACACTTCCCATTTGAAAG--ATTTC
i canFam3.chr16            I 520 C 0

a score=1194300.000000
s hg38.chr4_KI270925v1_alt     40354 411 +    555799 tgagatgatttggctttgtgtccccacccaaatctcatctcaaattgtaatccctgtaatgcccacatattgagggagggaccagggg-----------gagcataggggcag-ttcccgcatgctgttctcatgatagtgagtgagtactcatgagatttgatggtgttataagtgtttgacagtttctccttcacacacactctttctctctctctgtctcctgttgccttgtgaaggaggtgcctgcttccacttctgccataactatgtttcctgaggccttcccagccatgcagaactgtgagtcaattaaacctcctttgtttataaattacccagtctggggtagtatctgtatagcagtgttaaaatcaactaatacaAtaaattggtaccaaggtagtagggcactgctataaa
s panTro4.chr4             192739133 411 + 193495092 tgagatgatttggctttgtgtccccacccaaatctcatctcaaattgtaatccctgtaatgcccacatgttgagggagggaccagggg-----------gagcataggggcag-ttcccgcatgctgttctcatgatagtgagtgagtactcatgagatttgatggtgttataagtgtttgacagtttctccttcacacacactctttctctctctctgtctcctgttgccttgtgaagaaggtgcctgcttccgcttctgccataactatgtttcctgaggccttcccagccatgcagaactgtgagtcaattaaacctcctttgtttataaattacccattctggggtagtatctgtatagcagtgttaaaatgaactaatacaAtaaattggtaccaaggtagtagggcactgctataaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197841816 411 + 198332218 tgagatgatttggctctgtgtccccacccaaatctcatctcaaattgtaatccctgtaatgcccacatgttgagggagggaccagggg-----------gagcataggggcaa-ttcccccatgctgttctcatgatagtgagtgagtactcatgagatttgatggtgttataagtgtttgacagtttctccttcacacatactctttctctctctctgtctcctgttgccttgtgaagaaagtgcctacttccccttctgccataattatgtttcctgaggccttcccagccatgcagaactgtgagtcaattaaagctcctttgtttataaattacccattctggggtagtatctgtatagcagtgttaaaatgaactaatacaAtaaattggtaccaaggtagtagggcactgctataaa
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113613071 407 + 115148730 tgagatgatttggctttgtgtccccacccaaatctcatctcaaattgtaatccctgtaatgcccacatgttgagggagggaccagggg-----------gagcataggggcag-ttcccccatgctgttctcatgatagtgagtgagtactcatgagatttgatggtgttataagtgtttgacagtttctcctacacacacactctt----tctctctgtctcctgttgccttgtgaagaaggtgcctgcttccccttctgccataattatgtttcctgaggccttcccagccatgtggaactgtgagtcaattaaacctcctttgtttataaattacccagtctggggtagtatctgtatagcagtgttaaaatgaactaatacaAtaaattggtaccaaggtagtagggcactgctataaa
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183445111 411 + 184069350 tgagatggtttggctctgtgtccccacccaaatcttatcttgaattgtaatccctgtaatgaccacatgttgagagagggaccagtag-----------gatcataggggcagtttcccccgtgctattctcatgatagtgagtgagtactcgtaagatttgatggtgttataagtgtttgacagtttctccttcacacactctttctctctctctcggtctcctgttgccttgtgaagaaggtgtctgtttccccttccatcataattatgttttctgaggtctccgcagccatgcggaactgtgagtcaattaaacctcctttgtttataaattacccagtctcaggtagtatctgtatagcagtgtgaaaatgaactaata-AATAAATTGGTACCAAGGTAGTGGGGCACTGCTATAAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188824595 411 + 189454096 tgagatggtttggctctgtgtccccacccaaatcttatcttgaattgtaatccctgtaatgaccacatgttgagagagggaccagtgg-----------gatcataggggcagtttcccccgtgctattctcatgatagtgagtgagtactcgtaagatttgatggtgttataagtgtttgacagtttctccttcacacactctttctctctctctcggtctcctgttgccttgtgaagaaggtgtctgtttccccttccatcataattatgtttcctgaggtctccgcagccatgcggaactgtgagtcaattaaacctcctttgtttataaattacccagtctcaggtagtatctgtatagcagtgtgaaaatgaactaata-AATaaattggtaccaaggtagtggggcactgctataaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178252734 411 + 178775436 TgagatggtttggctctgtgtccccacccaaatcttatcttgaattgtaatccctgtaaTGACCACATGTTGAGAGAGGGACCAGTgg-----------gatcataggggcagtttcccccgtgctattctcatgatagtgagtgagtacTCGTAAGATTTGATGGtgttataagtgtttgacagtttctccttcacacactctttctctctctctcagtctcctgttgccttgtgaagaaggtgtctgtTTCCCCTTCCGTCATAATtatgtttcctgaggtctccgcagccatgcggaactgtgagtcaattaaacctcctttgtttataaattacccagtctcaggtagtatctgtatagcagtgtgaaaatgaactaata-aataaattggtaccaaggtagtggggcactgctataaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135192863 411 + 135778131 tgagatggtttggctctgtgcccccacccaaatcttaacttgaattgtaatccctgtaatgcccacatgttcagagagggaccagtgg-----------gatcacaggggcagtttcccccatgctatcctcatgatagtgagtgagtactcataagatttgatggtgttataagtgtttgacagtttctccttcacacactctttgtctctctctcggtctcctgttgccttgtgaagaaggtgcctgtttccccttctgtcataattatgtgtcctgaggtccccacagccatgcggaactgtgagtcaattaaacctcctttgtttataaattactgagtctcaggtagtatctgtatagcagtgtgaaaatgaactaata-AAtaaattggtaccaaggtagtggggcactgctataaa
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190344172 420 - 190850796 tgagacggtttggctatgtgtccccacccaaatctcatctcaagttgtagtctctgtaatacccacatgttgaggggtgggccgggtgggagggggttagatcatgagggtggcttcccccatgctgttctcatgatagtgagtgagtactcataaaatttgctgcttttataagtgtttgacagtttctccttcacaagtgctctcttgcttcct--gtctcctgttaccttgtgatgaaggtgcctgcttccccttctgtcataattatgtttcctgaggtctcca-agccatgtggaagtgtgagtcaattaaacctcctttgcttgtaaattacccagtctctggtagtatctgcatagcagtgtgaaaatgaactaatacaAtaaattggtaccaaggtagtggggcactgctctaaa
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87441402   0 - 129401213 C
e canFam3.chr16             17775068   0 -  59632846 C

a score=255018.000000
s hg38.chr4_KI270925v1_alt     40765 206 +    555799 gatacttgaaaatgtgggtgcagctttggaactggataacacccagagattggaacagtttggagggctcagaagaagacatgaaaatgtggaaaagtttggaacttcctagagacttgttgaatggttttgaccaaaattctaataatgatgtgaacaatgaagtccaggctgaagtggtctcagatggagatgaggaacttctt
s panTro4.chr4             192739544 206 + 193495092 gatacttgaaaatgtgggtgcagctttggaactggataacacacagagattggaacagtttagagggctcagaagaagacatgaaaatgtggaaaagtttggaacttcctagagacttgttgaatggttttgaccaaaattctaataatgatgtgaacagtgaagtccaggctgaagtggtctcagatggagatgaggaacttctt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197842227 206 + 198332218 gatacttgaaaatgtgggtgcaactttggaactggataacacacagagattggaacagtttggagggctcagaagaagacatgaagatatggaaaagtttggaacttcctagagacttgttgaatggttttgaccaaaattctaataatgatgtggacaatgaagtccaggctgaagtggtctcagatggagatgaggaacttctt
i ponAbe2.chr4             C 0 M 644
s nomLeu3.chr7b            113613478 206 + 115148730 gatacttgaaaatgtgggtgcaactttggaactggataatacacagagattggaacagtttggagggctcagaagaagacatgaagatatggaaaagtttggaacttcctagagacttgttgaatcgttttgaccaaaattctaataatgatgtggacaatgaagtccaggctgaagtagtctccgatggagatgaggaacttctt
i nomLeu3.chr7b            C 0 C 0
s chlSab2.chr7             135193274 206 + 135778131 gatacttgaaaatgtaggtacaactttggaactgtataacccacagaggttggaacagtttggagggctcagaagaagacatgaagagatgggaaagtttggaacttcctagagacttgttgaatgtttttgaccaaaatgctgatagtgatgtggacagcgaagtccagactgtggtggtctcagacagagatgaggaacttctt
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190344592 206 - 190850796 gatactcgaaagtgttgatgcaactttggaactggataacatgcagaggttggaatagtgcagagggctcagaagaaaacacagagatgtggaaaagtctggaacttcctagagacttgctgaatggttttgactgaaatgctaatattgatgtggacaatgaagtccaggctgaggtggtctcagatggagatgaggaacttctt
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87441402   0 - 129401213 C
e canFam3.chr16             17775068   0 -  59632846 C
e papAnu2.chr5             178253145   0 + 178775436 C
e macFas5.chr5             188825006   0 + 189454096 C
e rheMac3.chr5             183445522   0 + 184069350 C

a score=150987.000000
s hg38.chr4_KI270925v1_alt     40971 185 +    555799 gggaatcagagaaaaggtcactcttgctatgctttagcaaagagactggtggcattttgcccctgtgctagagatctgtggaactttgaacttagagagacaatctgaaattggaacttatgtttaagagggaaggagagcatcaaagttcgaaaaatttgcagcatgacgatgtggtagaaaat
s panTro4.chr4             192739750 185 + 193495092 gggaatcagagaaaaggtcactcttgctatgctttagcaaagagactggtggcattttgcccctgtgctagagatctgtggaactttgaacttagagagacaatctgaaattggaacttatgtttaagagggaaggagagcatcaaagttcgaaaaatttgcagcatgacgatgtggtagaaaat
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113613684 185 + 115148730 gggaatcagagaaaaggtcactcttgctatgctttaacaaagggactggtggcattttgcccctgtgctagagatctgtggaactttgaacttagagagacaatgtgaaattggaacttatgtttaaaagggaagcagagcaccaaagttcggaaaatttgcagcatgatgatgtggtagaaaat
i nomLeu3.chr7b            C 0 C 0
s chlSab2.chr7             135193480 183 + 135778131 gggaatcagagaaaaggtcactcgtgcta--ctttagcaaagagactggtggcattttgcccctgtgctagagatctatggaactttgaacttagagagatgatctgaaattggaacttgtgtttaaaagggaagcagagcatcaaagtttggaaaatttgcagcctgatgatgaggtaggaaaa
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190344798 185 - 190850796 ggaaactggagaaaaggtcactcttgctatgctttagcaaagacactggtggcattttgcccctgtgctagtcttctgtggaactttgaacttagagagagaatctgaaattggaacttgtgtttaaaagggaagcagagcatcaaaatttggaaaatttgcagcctgatgatgcaatagaaaat
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87441402   0 - 129401213 C
e canFam3.chr16             17775068   0 -  59632846 C
e papAnu2.chr5             178253145   0 + 178775436 C
e macFas5.chr5             188825006   0 + 189454096 C
e rheMac3.chr5             183445522   0 + 184069350 C
e ponAbe2.chr4             197842433 644 + 198332218 M

a score=2730.000000
s hg38.chr4_KI270925v1_alt     41156 5 +    555799 aaaaa
s panTro4.chr4             192739935 5 + 193495092 aaaaa
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113613869 5 + 115148730 aaaaa
i nomLeu3.chr7b            C 0 C 0
s chlSab2.chr7             135193663 5 + 135778131 aaaaa
i chlSab2.chr7             C 0 I 4
e mm10.chr8                 87441402 0 - 129401213 C
e canFam3.chr16             17775068 0 -  59632846 C
e calJac3.chr3             190344983 0 - 190850796 C
e papAnu2.chr5             178253145 0 + 178775436 C
e macFas5.chr5             188825006 0 + 189454096 C
e rheMac3.chr5             183445522 0 + 184069350 C
e ponAbe2.chr4             197842433 644 + 198332218 M

a score=1436.000000
s hg38.chr4_KI270925v1_alt     41161 8 +    555799 ccctttgt
s panTro4.chr4             192739940 8 + 193495092 ccctttgt
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113613874 8 + 115148730 cccatttt
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87441402 0 - 129401213 C
e canFam3.chr16             17775068 0 -  59632846 C
e calJac3.chr3             190344983 0 - 190850796 C
e chlSab2.chr7             135193668 4 + 135778131 I
e papAnu2.chr5             178253145 0 + 178775436 C
e macFas5.chr5             188825006 0 + 189454096 C
e rheMac3.chr5             183445522 0 + 184069350 C
e ponAbe2.chr4             197842433 644 + 198332218 M

a score=86442.000000
s hg38.chr4_KI270925v1_alt     41169 960 +    555799  
s panTro4.chr4             192739948 958 + 193495092  
i panTro4.chr4             C 0 M 752
e mm10.chr8                 87441402   0 - 129401213 C
e canFam3.chr16             17775068   0 -  59632846 C
e calJac3.chr3             190344983   0 - 190850796 C
e chlSab2.chr7             135193668   4 + 135778131 I
e papAnu2.chr5             178253145   0 + 178775436 C
e macFas5.chr5             188825006   0 + 189454096 C
e rheMac3.chr5             183445522   0 + 184069350 C
e nomLeu3.chr7b            113613882   0 + 115148730 C
e ponAbe2.chr4             197842433 644 + 198332218 M

a score=0.000000
s hg38.chr4_KI270925v1_alt     42129 253 +    555799 tagtaaactatcgcaaggacaaaaaaccaaacaccgcatattctcactcataggtgggaattgaacaatgagatcacatggacacaggaaggggaatatcacactctggggactgtggtggggtggggggaggggggagggatagcattgggagatatgcctaatgctagatgacgatttagtgggtgcagcacaccagcatggcatatgtatacatatgtaactaacctgcacaatgtgcacatgtacccta
e mm10.chr8                 87441402   0 - 129401213 C
e canFam3.chr16             17775068   0 -  59632846 C
e calJac3.chr3             190344983   0 - 190850796 C
e chlSab2.chr7             135193668   4 + 135778131 I
e papAnu2.chr5             178253145   0 + 178775436 C
e macFas5.chr5             188825006   0 + 189454096 C
e rheMac3.chr5             183445522   0 + 184069350 C
e nomLeu3.chr7b            113613882   0 + 115148730 C
e ponAbe2.chr4             197842433 644 + 198332218 M
e panTro4.chr4             192740906 752 + 193495092 M

a score=1383.000000
s hg38.chr4_KI270925v1_alt     42382 15 +    555799 aaacttaaagtataa
s panTro4.chr4             192741663 15 + 193495092 AAACTTAAAGTATAA
i panTro4.chr4             M 752 C 0
e mm10.chr8                 87441402  0 - 129401213 C
e canFam3.chr16             17775068  0 -  59632846 C
e calJac3.chr3             190344983  0 - 190850796 C
e chlSab2.chr7             135193668  4 + 135778131 I
e papAnu2.chr5             178253145  0 + 178775436 C
e macFas5.chr5             188825006  0 + 189454096 C
e rheMac3.chr5             183445522  0 + 184069350 C
e nomLeu3.chr7b            113613882  0 + 115148730 C
e ponAbe2.chr4             197842433 644 + 198332218 M

a score=2489.000000
s hg38.chr4_KI270925v1_alt     42397 27 +    555799 t---aaaaaaaaaaagaaaagaaaaaccca
s panTro4.chr4             192741678 30 + 193495092 TTaaaaaaaagaaaagaaaagaaaaAccca
i panTro4.chr4             C 0 C 0
s calJac3.chr3             190344983 21 - 190850796 ---taaaaaaaaaaacaaaaaaca------
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87441402  0 - 129401213 C
e canFam3.chr16             17775068  0 -  59632846 C
e chlSab2.chr7             135193668  4 + 135778131 I
e papAnu2.chr5             178253145  0 + 178775436 C
e macFas5.chr5             188825006  0 + 189454096 C
e rheMac3.chr5             183445522  0 + 184069350 C
e nomLeu3.chr7b            113613882  0 + 115148730 C
e ponAbe2.chr4             197842433 644 + 198332218 M

a score=2367.000000
s hg38.chr4_KI270925v1_alt     42424 5 +    555799 ttttt
s panTro4.chr4             192741708 5 + 193495092 ttttt
i panTro4.chr4             C 0 C 0
s chlSab2.chr7             135193672 5 + 135778131 ttttt
i chlSab2.chr7             I 4 C 0
s calJac3.chr3             190345004 4 - 190850796 -tttt
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87441402 0 - 129401213 C
e canFam3.chr16             17775068 0 -  59632846 C
e papAnu2.chr5             178253145 0 + 178775436 C
e macFas5.chr5             188825006 0 + 189454096 C
e rheMac3.chr5             183445522 0 + 184069350 C
e nomLeu3.chr7b            113613882 0 + 115148730 C
e ponAbe2.chr4             197842433 644 + 198332218 M

a score=273967.000000
s hg38.chr4_KI270925v1_alt     42429 344 +    555799 ctggggagaaattcaagctggctgcagaaatttgcataagtaaaaaggagcccaatgttaatcaccaaaacaatggggaaaatgtctccagggtatgtcagagataccagtggcagctgctcccatcacagacctggaggagcaggaggaaaaaatggttttgtgggccaggcccagggccccgcaactgggtgcagcctcaggacttggtcccctgtgtctcagcctctccagctgcagctgtggctaaaaggggccaaggtatagctcaggtcattgcttcagagggtgcaaaccccaagccttggtggcttccatgaggtgttcagcctgcaggtgcacag
s panTro4.chr4             192741713 344 + 193495092 ctggggagaaattcaagctggctgtagaaatttgcataagtaaaaaggagcccaacgttaatcaccaaaacaatggggaaaatgtctccagggtatgtcagagataccagtggcagctgctcctatcacagacctggaggagcaggaggaaaaaatggttttgtgggccaggcccagggccccgcaactgggtgcagcctcaggacttggtcccctgtgtctcagcctctccagctgcagctgtggctaaaaggggccaaggtatagctcaggtcattgcttcagagggtgcaaaccccaagccttggtggcttccatgaggtgttcagcctgcaggtgcacag
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113613882 342 + 115148730 ctggggagaaattcaagctggctgcagaaatttgcgtaagtaaaaacaagcccaacgttaatcaccaaaacaatggggaaaatgtctccagggtatgtcagagataccggtggcatctgctcccatcacagacctggaggagtaggaggaaaaaatggtttcatggaccatgcccagggccctacaactgggtgcagcctcaggacttggtcccctgtgtctcagcctctccagctgcagc--tggctgaaaggggccaaggtatagctcaggtcattgcttcagagggtgcaaaccccaagccttggtggcttccatgaggtgttcagcctgcaggtgcacag
i nomLeu3.chr7b            C 0 C 0
s chlSab2.chr7             135193677 343 + 135778131 ctggggagaaattcaagttggctgcagaaatttgcataagtaacaagcagcccaatgttaatcaccaaaacaatggggaaaatgtcccgagggtatatcagagatactggaggcagcccctcccatcagaggactggaggactaggaggaaaaaatggtttcgtgggccaggcccagggccctgcaactgggtgcagcctcaggacttggtcccctgtgtctcagcctctccagct-cagctgtggctaaaaggggccaaggtatagctcaggtcgttgcttcagagggtgcaaaccccaaaccttggtggcttccatgaggtgttcaacctgcaggtgcacag
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190345008 336 - 190850796 cttgggagaaattcaagccggctacagaaatttgcataagcagcaaggagcaaaatattaattgctgaagcaataggg-aaatgcctccagggcatgtcagagatcctggtggcagcccctcccattacaggcctggaagactaggaggaaaaaatggttttgtaggccaggcccagggctctgctgctgggtgcagcctcaggacttggtgccctgtgtctcagcctctccagctccagctgtggctgaaaggggctaaggtgtagttcaggtcattgcttcagagggtgcaaacaccaatccttgatggcttccatgaggcgttcagt-------tgcacag
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87441402   0 - 129401213 C
e canFam3.chr16             17775068   0 -  59632846 C
e papAnu2.chr5             178253145   0 + 178775436 C
e macFas5.chr5             188825006   0 + 189454096 C
e rheMac3.chr5             183445522   0 + 184069350 C
e ponAbe2.chr4             197842433 644 + 198332218 M

a score=1187515.000000
s hg38.chr4_KI270925v1_alt     42773  992 +    555799  
s panTro4.chr4             192742057 1064 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197843080 1069 + 198332218  
i ponAbe2.chr4             M 644 C 0
s nomLeu3.chr7b            113614224 1060 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s chlSab2.chr7             135194020 1055 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190345344 1038 - 190850796  
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87441402    0 - 129401213 C
e canFam3.chr16             17775068    0 -  59632846 C
e papAnu2.chr5             178253145    0 + 178775436 C
e macFas5.chr5             188825006    0 + 189454096 C
e rheMac3.chr5             183445522    0 + 184069350 C

a score=5733.000000
s hg38.chr4_KI270925v1_alt     43765 3 +    555799 TTT
s panTro4.chr4             192743121 3 + 193495092 TTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197844149 3 + 198332218 TTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113615284 3 + 115148730 TTT
i nomLeu3.chr7b            C 0 C 0
s chlSab2.chr7             135195075 3 + 135778131 TTT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190346382 3 - 190850796 TTT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17775068 3 -  59632846 TTT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87441402 0 - 129401213 C
e papAnu2.chr5             178253145 0 + 178775436 C
e macFas5.chr5             188825006 0 + 189454096 C
e rheMac3.chr5             183445522 0 + 184069350 C

a score=317468.000000
s hg38.chr4_KI270925v1_alt     43768 211 +    555799 T----CTAGGAAAATTTATTTTCATTTGTAAAATATTTAATGAAATAGTAGTCAACTTATTCAAAGAAATATT--GTTTCACTCATTACAAAGTAGTGGT-AAAATATGTACA--TTTCTTTGAACTAAATTGT-----ACttctt-aaaaactttgttattttggaataattttatatttatagaaaagttgcaaagatagta-cagagaatccctgtcc-----acccCt
s panTro4.chr4             192743124 212 + 193495092 TT---CTAGGAAAATTTATTTTCATTTGTAAAATATTTAATGAAATAGTAGTCAACTTATCCAAAGAAATATT--GTTTCACTCATTACAAAGTAGTGGT-AAAATATGTACA--TTTCTTTGAACTAAATTGT-----ACttctt-aaaaactttgttattttggaataattttatattcatagaaaagttgcaaagatagta-cagagaatcgctgtcc-----acccCt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197844152 213 + 198332218 TT---CTAGGAAAATTTATTTTCATTTGTAAAATATTTAATGAAATAGTAGTCAACTTATCCAAAGAAATATT--GTTTCACTCATTACAAAGTCGTGGT-AAAATAAGTACA--TTTCTTTGAACTAAATTGT-----ACtttttaaaaaactttgttattttggaataattttatatttatagaaaagttgcaaagatagta-cagagaatccctgtcc-----acccCt
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113615287 210 + 115148730 TT---CTAGGAAAATTTATTTTCATTTGTAAAATATTTAATGAAATAGTAGTCAACTTATCCAAAGAAATATT--GTTTCACTCATTACAAAGTAGTGGT-AAAATATGTACA--TTTCTTTGAACTAAATTGT-----ACttttt-aaaaactttgttattttggaataattttatatttatagaaaagttgcaaagataata-cagagaatccctgtcc-----accc--
i nomLeu3.chr7b            C 0 C 0
s chlSab2.chr7             135195078 210 + 135778131 T----CTAGAAAAACTTATTTTCATTTGTAATACATTTAATTACATAGTAGTCGACTTATCCAAAGACACATT--GTTTCACTCATTACAAAGTAGTGGT-AAAATATGTACC--TTTCTTTGAACTAAACTGT-----ACttttt-aaaaactttattattttggaataattttatatttatagaaaagttgcaaagatagtc-cagagaatctctatcc-----acccC-
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190346385 200 - 190850796 TTTTCCTAGAAAAAC---TTCTCATTTGTGAAATATTTAATGAAATAGTAGTCAACTTATCCAAAGAAATATT--GTTTCACTCATAACAAACTAGTGGT-AAAATATGT--------------ACTAAACTGT-----GTtcttt-aaaaattttattattttgaaataattttacatttacagaaaagttgtgaagatagaa-tagagaatccctgtct-----acccCt
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87441402 212 - 129401213 -T---CTTTGAAATCTAATTCTTATTTCTAAACTATTGAGTGGCAGGTGAGTTGCTTTATCCAAATAAATATT--TTTTGACTCATATTAACATAGAAGTAAAAATCTGTATT--TTCCTTTCAGC-----TGT-----TTCTACA-GTAaacgtt-ttattctggaataagattatgcttgaagaaaagttgcaaaaatattaccaaataatttctgATCATGGTATTCCT
i mm10.chr8                C 0 C 0
s canFam3.chr16             17775071 219 -  59632846 -T---CTAGAAATGTTTGTTTTTATTTGTAAGATATTTAATGGCACAGTGGTCACATTATTCAAAGAAATATCAAGTCTGACTCATAACAAGGTAAAAGT-AAAATTTATACCTTTTTTTTTCAGTCGAATTGTGGGGGGtttcta-agtacactttttattctggagtaattttagaattacagaaaagtggcaaagat-gta-cagaaagttcctatat-----accccc
i canFam3.chr16            C 0 C 0
e papAnu2.chr5             178253145   0 + 178775436 C
e macFas5.chr5             188825006   0 + 189454096 C
e rheMac3.chr5             183445522   0 + 184069350 C

a score=299756.000000
s hg38.chr4_KI270925v1_alt     43979 244 +    555799 gttaaaataattaagtggtacaccatt-------------------------------------aggttagagtggctctagtgccctgtgttcccacataaacaaagtggaacttGAGCTGGCAATCATAGGCCACCAGCTGTGCATTTtccaacttcaaccaataagcagttcctttgctctgtttccacattcaccctataa-----atccccacagcccctttggggaagcccttcagagcttgtagtttggtgctgcctggttaatgaatccctgtttgct
s panTro4.chr4             192743336 244 + 193495092 gttaaaataattaagtggtacaccatt-------------------------------------aggttagagtggctctagtgccctgtgttcccacataagcaaagtggaacttGAGCTGGCAATCATAGGCCACCAGCTGTGCATTTtccaacttcaaccaataagcagttcctttgctctgtttccacattcaccctataa-----atccccacagcccctttggggaagcccttcagagcttgtagtttggtgctgcctggttaatgaatccctgtttgct
i panTro4.chr4             C 0 I 939
s ponAbe2.chr4             197844365 281 + 198332218 gttaaaataattaaatggaacaccattatgttagagtggctctagtgccctgtgttcccacataaggttagagtggctctagtgccctgtgttcccacataagcaaagtggaacttGAGCTGGCAATCATAGGCCACCAGCTGTGCATTTtccaacttcaaccaataagcaattcctttgctctgtttccacattcaccctataa-----atccccacagcacctttggggaagcccttcagagcttgtagtttggtgctgcctggttaatgaatccctgtttgtt
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113615497 244 + 115148730 gttaaaataattaaatggaacaccatt-------------------------------------aggttagagtggctctagtgccctgtgttcccatataagcaaagtggaacttGAGCTGGCAATCATAGGCCACCAGCTGTGCATTTtccaacttcaaccaataaacagttcctttgctctgtttccacattcaccctataa-----atccccacagcccctttggggaagcccttcagagcttgtagtttggtgctgcctggttaatgaatccctgtttgtt
i nomLeu3.chr7b            C 0 C 0
s chlSab2.chr7             135195288 252 + 135778131 gttaagataattagat-gaacaccattaggttagag----------------------------tggctagagtggctctagtgccctgtgatcccacataagcaaagtggaacttgaGCTGGCAATCATAGGTCACCAGCTGTGCGTTTTCCGacttcaaccaatatgcagttcctttgctctgtttccacattcaccctataa-----atccccacagcccctttggtgaagcccttcagagcttgtagtttggtgctgcctggttaatgaatccctgtttgtt
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190346585 240 - 190850796 gttaaaataattaaagggaa-ggcatt-------------------------------------aggttggagtggctctagtgccctgtgttcccgcataagcaaagtggaacttgagctcgcaatcatAGGCCGCCACCTGCGCATTCTCAAACCt-aaccagtaagcggttcctctgctctg-ttccactttcaccctgtaa-----atcccctccgcccctttggtgaaacccgtcagagcttgcagtgtggtgctgcctggctaatgaatccctgtttct-
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87441614 215 - 129401213 GTAAACACAATTATAGGGGAGACCATC-------------------------------------AGATCAGGGTGCCTATAATGAGCCCGGTTTCTCCATAAACAGAG----------------------------CAAGCTCTaactcctcaaacttaaaccaat-cgtatcaattttgtcc---ttctgtattcaacttattaagtttattctcctgccccctttggttgagccttaaaccacctgggatttgCTATTTGCTG--CAGTAAATTCTTTTAAAAT
i mm10.chr8                C 0 C 0
e canFam3.chr16             17775290   0 -  59632846 C
e papAnu2.chr5             178253145   0 + 178775436 C
e macFas5.chr5             188825006   0 + 189454096 C
e rheMac3.chr5             183445522   0 + 184069350 C

a score=17049.000000
s hg38.chr4_KI270925v1_alt     44223 24 +    555799 caaataaat-----tctATCTTTTAACAG
s ponAbe2.chr4             197844646 24 + 198332218 caaataaat-----tctATCTTTTAACAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113615741 24 + 115148730 caaataaat-----tctATCTGTTAACAG
i nomLeu3.chr7b            C 0 C 0
s chlSab2.chr7             135195540 24 + 135778131 caaataaat-----tctATCTTTTAAGAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190346825 24 - 190850796 tcagtaaat-----tctATCTTTTAACAG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87441829 29 - 129401213 GTAATATGCTTCTATTTATCTTTCATGTT
i mm10.chr8                C 0 C 0
e canFam3.chr16             17775290  0 -  59632846 C
e papAnu2.chr5             178253145  0 + 178775436 C
e macFas5.chr5             188825006  0 + 189454096 C
e rheMac3.chr5             183445522  0 + 184069350 C
e panTro4.chr4             192743580 939 + 193495092 I

a score=80692.000000
s hg38.chr4_KI270925v1_alt     44247 69 +    555799 ccctt-cctagtttcccttattactaacatttcacatcactatggcaca------ttgatcaagacagaaaa-tgat
s ponAbe2.chr4             197844670 70 + 198332218 cccttacctagtttcccttattagtaacatttcacatcactatggaaca------ttgatcaagacagaaaa-tgat
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113615765 70 + 115148730 cccttacctagtttcccttattactaacatttcacatcactatggcaca------ttgatcaagacagaaca-tgat
i nomLeu3.chr7b            C 0 C 0
s chlSab2.chr7             135195564 70 + 135778131 TCCTTACCTAGTTTTCCTTATTACTAACATTTCACATCACTATGGCACA------TTGATCAAGACAGAAAA-TGAT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190346849 77 - 190850796 cctttacctagtttcccttattactaacgtttcatatcactatggcacaccgatcttgatcaagacagaaaattaat
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87441858 74 - 129401213 TTCTAACCTAGTTTTCCTTGTTAGCAATATTATCCATGACCTCAGCAAA--AACGCTTATCAGCATAGCAAA-TGGT
i mm10.chr8                C 0 I 115
s canFam3.chr16             17775290 70 -  59632846 -ccccatctagtttcccttatcattcacattttacattaccacagtaca------ttattcaaaacaagaaactgac
i canFam3.chr16            C 0 C 0
e papAnu2.chr5             178253145  0 + 178775436 C
e macFas5.chr5             188825006  0 + 189454096 C
e rheMac3.chr5             183445522  0 + 184069350 C
e panTro4.chr4             192743580 939 + 193495092 I

a score=375282.000000
s hg38.chr4_KI270925v1_alt     44316 453 +    555799  
s ponAbe2.chr4             197844740 453 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113615835 453 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s chlSab2.chr7             135195634 453 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190346926 417 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17775360 610 -  59632846  
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87441932 115 - 129401213 I
e papAnu2.chr5             178253145   0 + 178775436 C
e macFas5.chr5             188825006   0 + 189454096 C
e rheMac3.chr5             183445522   0 + 184069350 C
e panTro4.chr4             192743580 939 + 193495092 I

a score=379470.000000
s hg38.chr4_KI270925v1_alt     44769 177 +    555799 gaggtgtacaggcaagttatcccacaggaagaccccca-cctgggtttctttgatgtctttctcatgggatttggggaaggaatttcacagagataaagtgctttccttgtcacatcaaattagggg-----------cacacgacaccactgaggttgttcaccttcatcactcatttcatgtggttt
s ponAbe2.chr4             197845193 177 + 198332218 gaggtgtacaggggaattatcccacaggaagaccccca-cctgggtttctttgatgtctttctcatgggatttggggaaggaatttcacagagataaagtgctttccttgtcacatcaaattagggg-----------cacatgacaccactgaggttgttcaccttcatcactcatttcatgtggttt
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113616288 177 + 115148730 gaggtgtacaggcgagttatcccacaggaagaccccca-cctgggtttctttgatatctttctcatgggatttggggaaggaatttcacagagataaagtgctttccttgtcacatcaaattagggg-----------cacatgacaccactgaggctgttcaccttcatcactcatttcatgtggttt
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183445522 178 + 184069350 GAGGTGTACAGGCGAGTTATCCCACAGGAAGACCCCCA-TC----------TGGTTTCTTTCTCatgggatttggggaaggaatttcacagaggtaaagtgttttccttgtcacatcaaattagagacacatgatatccacatgacaccactgaggatgttcaccttcatcactcattccgtgtgcctt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188825006 178 + 189454096 gaGGTGTACAGGCGAGTTATCCCACAGGAAGACCCCCA-TC----------TGGTTTCTTTCtcatgggatttggggaaggaatttcacagaggtaaagtgttttccttgtcacatcaaattagagacacatgatatccacatgacaccactgaggatgttcaccttcatcactcattccgtgtgcctt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178253145 178 + 178775436 gaggtGTACAGGCGAGTTATCCCACGGGAAGACCCCCA-TC----------TGGTTTCTTTCTCATGGGATTTGGGGAAGgaatttcacagagataaagtgTTTTCCTTGTCACATCAAATTAGGGACACATGATATCCACATGACACCACTGAGGATGTTCACCTTCATCACTCATTCCGTGTGCTTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135196087 188 + 135778131 gaggtgtacaggcgagttatcccacaggaagaccccca-tctgggtttctttggtgtctttctcatgggatttggggaaggaatttcacagagataaagtgttttccttgtcacatcagattagggacacatggtatccacatgacaccactgaggatgttcaccttcatcactcattccatgtggctt
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190347343 188 - 190850796 gaggtgcacaggtgagttctctcacgggaagaccccca-tctgggtttgtttgatgtctttctcacgagatttggggaaggaatttcacagagataaagtgcttttcttaccacatcaaatgaggggcacatgatatccacatgacgccactgaggtggtccacctttatcacttgtttaatgcacttt
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17775970  87 -  59632846 gaggtatactgactagctaactcacagaaacccccccagtttgggtttgccccatgtctttcttatg-----------------------------------------------atcagactag-----------------------------------------tttatagatt--------------
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87441932 115 - 129401213 I
e panTro4.chr4             192743580 939 + 193495092 I

a score=273293.000000
s hg38.chr4_KI270925v1_alt     44946 131 +    555799 tgccaagtttttcctctcta----actctactatttt---------gc-ttttct-ttctctattctgtcccatggaaa---------caagtcactaagtttagcgtatggttggagaggaggattaagctccaacttctgtagagtaaaatgt
s ponAbe2.chr4             197845370 131 + 198332218 tgccaagcttttcctctcta----actctactatttt---------gc-ttttct-ttctctactctgtcccatggaaa---------caagtcactaagtttagtgtatggttggagaggaggattaagctccaacttctgtagagtaaaatgt
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113616465 131 + 115148730 tgccaagcttttcctctcta----actctactatttt---------gc-ttttct-ttctctactctgtcccatggaaa---------caagtcactaagtttagtgtatggttagagaggaggattaagctccaacttctgtagagaaaaatgt
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183445700 129 + 184069350 tgccaagcttttc--ctcta----actctactattgt---------gc-ttttct-ttctctactctgtcctgtggaaa---------caagtcactaagtttagtatatggttggagaggaggattaagttccaacttctatagagtaaaatat
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188825184 129 + 189454096 tgccaagcttttc--ctcta----actctactattgt---------gc-ttttct-ttctctactctgtcctgtggaaa---------caagtcactaagtttagtatatggttggagaggaggattaagttccaacttctatagagtaaaatat
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178253323 128 + 178775436 TGCCAAGCTTTTC--CTCTA----ACTCTACTATTGT---------GC-TCTTCT-TTCTCTACTCTGTCCTGTGGAAA---------CAAGTCACTAAGTTTAGTATATGGTT-GAGAGGAGGATTAAGTTCCAACTTCTATAGAGTAAAATAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135196275 131 + 135778131 tgccaagcttttcctctcta----actgtgctacttt---------gc-ttttct-ttctctactctgtcctgtggaaa---------caagtcactaagtttagtatatggttggagaggaggattgagctccaacttctatagagtaaaatat
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190347531 131 - 190850796 tgccaagcttttcctctcta----actctactatttt---------gctttttct-ttctctgctttgttgtatggaaa----------aagtcactaagttcagtgtatgattgaggaggagggttaagctccaacttctgtagagtaaattat
i calJac3.chr3             C 0 I 975
s mm10.chr8                 87442047 140 - 129401213 TGTCAAGATTTTTCTCCTTAACTTACTTTATAATTTTTTTTAAAAAGC-TATTCTATTATTTCCCCCATTATGTGAATC---------CAAGATATTAAGTACAGTCTG-GTTTTGGCATAAGGTTAAAGTCATAGTTTCT---GAGAAAAATT-
i mm10.chr8                I 115 C 0
s canFam3.chr16             17776057  86 -  59632846 -------------------------------------------------------------tgggaggaTTCATGGAATATGGGAGATTAAAGCTGTAGCTTTGGAATATGA--------GAGATTAAAGCTGTAGCTTCTGTAAACTgaaatag
i canFam3.chr16            C 0 C 0
e panTro4.chr4             192743580 939 + 193495092 I

a score=879495.000000
s hg38.chr4_KI270925v1_alt     45077 334 +    555799 ctacagaaatagtttggaatgtttctgtaaaataatgtaacttc------ttccccattcatt--------------ttttaatcatttacta--tatatcaacaggaacttgtgtatatttattctatactttcggttatatcccaatactctg-ttgtttattttactgctcagatgattccagcatta--agtggggagctccttcaggtgggcctctgtttccctttgtca---cactcccattctct---cgg----ggagtttttcatgcactttttaacttcctggttctacaaaatgccccaggcttatctcgtatGCGTGGTTTATGTTTTAAAGCCAAATGAAATATTAAATGCTCAAC--
s ponAbe2.chr4             197845501 335 + 198332218 ctacacaaataatttggaatgtttctgtaaaataatgcaacttc------ttccccattcatt--------------ttttaatcatttactacttatatcaacatggacttctgtatatttattctatactttcggttatatcccaatactctg-ttgtttattttactgctcagatgattccagcatta--aatggggagccccttcaggtgggcctctgtttccctttgtca---cactcccattctct----gg----ggggtttttcatgcactttttaacttcctggttctacaaaatgccccaggcttatctcatatGCGTGGTTTATGTTTTAAAGCCAAATGAAATATTAAATGCTCAAC--
i ponAbe2.chr4             C 0 I 2
s nomLeu3.chr7b            113616596 335 + 115148730 ctacaaaagtaatttggaatgtttctgtaaaataatgtaacttc------ttccccatgcatt--------------ttttaatcatttacta-ttatatcaacatagacttgtgtatatttattctatactttcggttatatcccaatactctg-ttgtttattttactgctcaaatgattccagcagta--aatggggagc-ccttcaggtgggcctctgtttccctttgtca---cactcccattctct--gggg----ggggggtttcatgcactttttaacttcctggttctacaaaatgccccaggcttatctcgtatGCGTGGTTTATGTTTTAAAGCCAAATGAAATATTAAATGCTCAAC--
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183445829 338 + 184069350 ctacacaaataatttggaatgtttctgtaaaataatgtaacttc------ttccccattcatt--------------ttttcatcatttactacttatgtcaacatggacttgtgtatatttattctatacttttggttatttcccaatactctg-ttgtttattttactactcaaatgattacagcatta--aatgtggagccccttcaggtgggcctctctttccctctgtca---cactcccattctct-ggggg----cgggggtttcacgcactttttaactttctggttctacaaaatgccccaggcttttctcgtatGCGTGGTTTATGTTTTAAAGCCAAATGAAACATTAAATGCTCAAC--
i rheMac3.chr5             C 0 I 2
s macFas5.chr5             188825313 338 + 189454096 ctacacaaataatttggaatgtttctgtaaaataatgtaacttc------ttccccattcatt--------------ttttcatcatttactacttatgtcaacatggacttgtgtatatttattctatacttttggttatttcccaatactctg-ttgtttattttactactcaaatgattacagcatta--aatgtggagccccttcaggtgggcctctctttccctctgtca---cactcccattctct-ggggg----caggggtttcacgcactttttaactttctggttctacaaaatgccccaggcttttctcgtatGCGTGGTTTATGTTTTAAAGCCAAATGAAACATTAAATGCTCAAC--
i macFas5.chr5             C 0 I 2
s papAnu2.chr5             178253451 338 + 178775436 CTACACAAATAATTTGGAATGTTTCTGTAAAATAATGTAACTTC------TTCCCCATTCATT--------------TTTTCATCATTTACTACTTATGTCAACATGGACTTGTGTATATTTATTCTATACTTTTGGTTATTTCCCAATACTCTG-TTGTTTATTTTACTACTCAAATGATTACAGCATTA--AATGTGGAGCCCCTTCAGGTGGgcctctctttccctctgtca---CACTCCCATTCTCT-GGGGG----CGGGGGTTTCATGCACTTTTAAACTTTCTGGTTCTACAAAATGCCCCAGGCTTTTCTCGTATGCGTGGTTTATGTTTTAAAGCCAAATGAAACATTAAATGCTCAAC--
i papAnu2.chr5             C 0 I 2
s chlSab2.chr7             135196406 339 + 135778131 ctacacaaataatttggaatgtttctgtaaaataatgtaacttc------ttccccattcatt--------------ttttcatcatttactacttatgtcaacatggacttgtgtatatttgttctatacttttggttatttcccaatactctg-ttgtttattttactactcaaatgattacagcatta--aatgcggagccccttcaggtgggcttctctttccctctgtca---cactcccattctctgggggg----ggggggtttcatgcactttttaactttctggttctacaaaatgccccaggcttttctcgtatGCGTGGTTTATGTTTTAAAGCCAAATGAAACATTAAATGCTCAAC--
i chlSab2.chr7             C 0 I 2
s calJac3.chr3             190348637 324 - 190850796 ctgcacaaataattttgaatttttctgttaaaaaaagtaacttc------ttccccatttatt--------------ttttaatcttttactccttacatcaacatggacttgtgtacatttattctaaactttccgttatatcccagtactccg-ccattaattttattgctcaaattattccagcgtta--agtagggagc-ccttcag-----------cttctccctgtca---cactcccgttcttt---agg----gggtttctttgtgcaccttttaacttcctgattctacaagatgtcccaggcttatctcgtatGCGTGGTTTACTTTGTAAAGCCAAATGAAACGTCAAGAGCTCAAC--
i calJac3.chr3             I 975 I 2
s mm10.chr8                 87442187 342 - 129401213 CTAACCAtatcacttggaatgcatctgtaaaaaaataaaaattaccagtgttcccaatttatttatatttaattagattttgagcatttatt---tataccaacatgaagttgtttacatttcct-tgttctctgggttgtaatcccataccatgattttctgttttatttctttaattgctcccatattg--gccattgagctccttcaggcaggctctttaagacctttgaca---tgcctgtattcttt-----------gggtgttctgagcacatttttactctctg---ctac----TTCCCTAGCCTTACTGTGTATATGTACTTTACTTTTTAAAGCCAAATAAAATATTAAAAGCTCAGG--
i mm10.chr8                C 0 I 2
s canFam3.chr16             17776143 325 -  59632846 ctacatacattatttggaatttttctgtaa-------------c------ttcctcatttatttat-----------tcttaatcattt-----taatatcagtataggc--acatatatttattttgtactttgggttatgattc-atactaca-----ttattttgtcatttaaattgttctagctttgccagttcggagctctttcaggttgactcctgtgactctatgacatgtcctcctcatccttt---tggttttgttttgttttgagtacttctttactttctggtattacaagatgtcccagacttatcttgtatTGGTAGTTTACTTTTCAAAGCCAAATAAAATATTAAATATTCAAGAC
i canFam3.chr16            C 0 C 0
e panTro4.chr4             192743580 939 + 193495092 I

a score=2634479.000000
s hg38.chr4_KI270925v1_alt     45411 716 +    555799  
s panTro4.chr4             192744519 716 + 193495092  
i panTro4.chr4             I 939 C 0
s ponAbe2.chr4             197845838 716 + 198332218  
i ponAbe2.chr4             I 2 C 0
s nomLeu3.chr7b            113616931 717 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183446169 714 + 184069350  
i rheMac3.chr5             I 2 C 0
s macFas5.chr5             188825653 714 + 189454096  
i macFas5.chr5             I 2 C 0
s papAnu2.chr5             178253791 714 + 178775436  
i papAnu2.chr5             I 2 C 0
s chlSab2.chr7             135196747 716 + 135778131  
i chlSab2.chr7             I 2 C 0
s calJac3.chr3             190348963 721 - 190850796  
i calJac3.chr3             I 2 C 0
s mm10.chr8                 87442531 689 - 129401213  
i mm10.chr8                I 2 C 0
s canFam3.chr16             17776468 717 -  59632846  
i canFam3.chr16            C 0 I 5

a score=63293.000000
s hg38.chr4_KI270925v1_alt     46127 20 +    555799 TTCACTATTTTCAACATACA
s panTro4.chr4             192745235 20 + 193495092 ttcactattttcaacacaca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197846554 20 + 198332218 TTTACTATTTTCAacacaca
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113617648 20 + 115148730 TTCACTATTTTCAacacaca
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183446883 20 + 184069350 TTCACTGTTTTCAGCATACA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188826367 20 + 189454096 TTCACTGTTTTCAGCATACA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178254505 20 + 178775436 TTCACTGTTTTCAGcataca
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135197463 20 + 135778131 TTCACTGTTTTCAGCATACA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190349684 20 - 190850796 TTTCCTATCATCAacacaca
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87443220 20 - 129401213 TTCATGGTTTTCAAAATACA
i mm10.chr8                C 0 I 388
e canFam3.chr16             17777185  5 -  59632846 I

a score=185292.000000
s hg38.chr4_KI270925v1_alt     46147  92 +    555799 TGCACGTG------------cacacacacacacacac----------------------------acatacaca--------------------------------------------caGGAAAAGAGTCCTTCCCAATGGGCAAGGAAAGTATTATCAATATATTTTCATTCTG
s panTro4.chr4             192745255  88 + 193495092 tgcacgtg------------cacacacacacacacac--------------------------------acaca--------------------------------------------caggaaaagagtccttcccaatgggcaaggaaagtattatcaatatattttcattctg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197846574  88 + 198332218 cgcatgtg------------cacatgcacacacacac--------------------------------aaaca--------------------------------------------caGGAAAAGAGTCCTTCCCAATGGGCAAGGAAAGTTTTCTCAATATATTTTCACTCTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113617668 114 + 115148730 cgcacatg------------cacacacacacacacaca------tgcacacacacacacacatgcacacacaca--------------------------------------------caGGAAAAGAGTCCTTCCCAACGGGCAAGGAAAGTATTCTCAATATATTTTCATTCTG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183446903 108 + 184069350 CACGTGTG----CGcacacacacacacacacacacaA--------------------------------ATGCA--------------------------------TGCTTATTACTTCAGGTAAAGGGTCCTTCCAGATGGGCAAGGAAAGTATTCTCAATATATTCTCACTCTG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188826387 112 + 189454096 CACGTGTGTGcacacacacacacacacacacacacaA--------------------------------ATGCA--------------------------------TGCTTATTACTTCAGGTAAAGGGTCCTTCCAGATGGGCAAGGAAAGTATTCTCAATATATTCTCACTCTG
i macFas5.chr5             C 0 T 2
s papAnu2.chr5             178254525 102 + 178775436 cacgtgtg----------tgcacacacacacacacaa--------------------------------atgca--------------------------------tgctTATTACTTCAGGTAAAGGGTCCTTCCAGATGGGCAAGGAAAGTATTCTCAATATATTCTCACTCTG
i papAnu2.chr5             C 0 I 13
s chlSab2.chr7             135197483 100 + 135778131 CACGTGTG------------TGCACACACACACACAA--------------------------------ATGCA--------------------------------TGCTTATTACTTCAGGTAAAGGGTCCTTCCAGATGGGCAAGGAAAGTATTCTCAATATATTCTCACTCTG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190349704 163 - 190850796 cacacaca------------cacgcacacacacacacacagacgcacacacgcacacacagacgcacacacacacacagacgcacacacacacacacagacgcacaTGCTTATTACATCAGG-Aaataatcctactatacgggcaaggaaagtattttcagtatgttttcactcta
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87443240 388 - 129401213 I
e canFam3.chr16             17777185   5 -  59632846 I

a score=7640.000000
s hg38.chr4_KI270925v1_alt     46239 8 +    555799 TGGATGAG
s panTro4.chr4             192745343 8 + 193495092 tggatgag
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197846662 8 + 198332218 TGGATGAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113617782 8 + 115148730 TGGATGAG
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190349867 8 - 190850796 tggatgag
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87443240 388 - 129401213 I
e canFam3.chr16             17777185 5 -  59632846 I
e chlSab2.chr7             135197583 0 + 135778131 C
e papAnu2.chr5             178254627 13 + 178775436 I
e macFas5.chr5             188826499 2 + 189454096 T
e rheMac3.chr5             183447011 0 + 184069350 C

a score=3492.000000
s hg38.chr4_KI270925v1_alt     46247 6 +    555799 GAAGCC
s panTro4.chr4             192745351 6 + 193495092 gaagcc
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113617790 6 + 115148730 GAAGCC
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190349875 6 - 190850796 gaagcc
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87443240 388 - 129401213 I
e canFam3.chr16             17777185 5 -  59632846 I
e chlSab2.chr7             135197583 0 + 135778131 C
e papAnu2.chr5             178254627 13 + 178775436 I
e macFas5.chr5             188826499 2 + 189454096 T
e rheMac3.chr5             183447011 0 + 184069350 C
e ponAbe2.chr4             197846670 0 + 198332218 C

a score=2540.000000
s hg38.chr4_KI270925v1_alt     46253 10 +    555799 ATGATATAGA
s panTro4.chr4             192745357 10 + 193495092 atgatataga
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113617796 10 + 115148730 ATgatatgga
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87443240 388 - 129401213 I
e canFam3.chr16             17777185  5 -  59632846 I
e calJac3.chr3             190349881  0 - 190850796 C
e chlSab2.chr7             135197583  0 + 135778131 C
e papAnu2.chr5             178254627 13 + 178775436 I
e macFas5.chr5             188826499  2 + 189454096 T
e rheMac3.chr5             183447011  0 + 184069350 C
e ponAbe2.chr4             197846670  0 + 198332218 C

a score=339.000000
s hg38.chr4_KI270925v1_alt     46263 5 +    555799 --TAGGA
s panTro4.chr4             192745367 5 + 193495092 --taggA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113617806 5 + 115148730 --tagga
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188826497 5 + 189454096 TGTGG--
i macFas5.chr5             T 2 C 0
e mm10.chr8                 87443240 388 - 129401213 I
e canFam3.chr16             17777185 5 -  59632846 I
e calJac3.chr3             190349881 0 - 190850796 C
e chlSab2.chr7             135197583 0 + 135778131 C
e papAnu2.chr5             178254627 13 + 178775436 I
e rheMac3.chr5             183447011 0 + 184069350 C
e ponAbe2.chr4             197846670 0 + 198332218 C

a score=99893.000000
s hg38.chr4_KI270925v1_alt     46268 135 +    555799 ATGAGGAAGCCATGCTATGGACATGGATGAGGAAGCCATGCtatggacatggatgaggaagccatgatatggatatggatgaggaagtcatgatatggatatggatgaggaagccatgatatggatatggatgaa
s panTro4.chr4             192745372 135 + 193495092 ATGAGGAAGCCATGCTATGGACATGGATGAGGAAGCCATGCTATGGACATGGATGAGGAAGCCATGCTATGGACATGGATGAGGAAGCCATGATATGGATATGGATGAGGAAGTCATGATATGGATATGGATGAG
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113617811 135 + 115148730 ataaggaagccatgctatggatgtggatgaggaaaccatgatatggatatagatgaggaagccatgatatggacatggatGAGGAAGCCGTGCTATGGACGTGGATGAGGAAGCCGTGCTATGGACGTGGATGAG
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188826502 135 + 189454096 ATGAGGAAGCCATGCTACGGACGTGGACGAGGAAGCCACGCTACGGATGTGGACGAGGAGGCCACGCTACGGACGTGGACGAGGAGGCCACGCTACGGACGTGGATGAGGAGGCCACGCTACGGACGTGGATGAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178254640 134 + 178775436 ACGAGG-AGCCATGCTATGGACGTGGATGAGGAGGCCACGCTATGGATGTGGATGAGGAAGCCACGCTATGGACGTGCATGAGGAAGCCACGCTATGGACGTGGATGAGGAAGCCACGCTATGGACGTGCATGAG
i papAnu2.chr5             I 13 C 0
e mm10.chr8                 87443240 388 - 129401213 I
e canFam3.chr16             17777185   5 -  59632846 I
e calJac3.chr3             190349881   0 - 190850796 C
e chlSab2.chr7             135197583   0 + 135778131 C
e rheMac3.chr5             183447011   0 + 184069350 C
e ponAbe2.chr4             197846670   0 + 198332218 C

a score=25298.000000
s hg38.chr4_KI270925v1_alt     46403 21 +    555799 gaagccatgctatggatatgg
s panTro4.chr4             192745507 21 + 193495092 GATGCCATGCTATGGACATGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197846670 21 + 198332218 GAAGCCATGCTATGGACATGG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113617946 21 + 115148730 GAAGCCGTGCTATGGACGTGG
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188826637 21 + 189454096 GAGGCCACGCTATGGACGTGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178254774 21 + 178775436 GAAGCCACGCTATGGACGTGG
i papAnu2.chr5             C 0 I 26
e mm10.chr8                 87443240 388 - 129401213 I
e canFam3.chr16             17777185  5 -  59632846 I
e calJac3.chr3             190349881  0 - 190850796 C
e chlSab2.chr7             135197583  0 + 135778131 C
e rheMac3.chr5             183447011  0 + 184069350 C

a score=16323.000000
s hg38.chr4_KI270925v1_alt     46424 13 +    555799 atgaggaagccat
s panTro4.chr4             192745528 13 + 193495092 ATGAGGAAGCTGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197846691 13 + 198332218 ATGAGGAAGCCAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113617967 13 + 115148730 ATGAGGAAGCCGT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188826658 13 + 189454096 ATGAGGAAGCCAT
i macFas5.chr5             C 0 T 172
s papAnu2.chr5             178254821 13 + 178775436 ATGAGGAAGCCAC
i papAnu2.chr5             I 26 C 0
e mm10.chr8                 87443240 388 - 129401213 I
e canFam3.chr16             17777185  5 -  59632846 I
e calJac3.chr3             190349881  0 - 190850796 C
e chlSab2.chr7             135197583  0 + 135778131 C
e rheMac3.chr5             183447011  0 + 184069350 C

a score=98145.000000
s hg38.chr4_KI270925v1_alt     46437 143 +    555799 gc------tatggatatggatgaggaagccatga--tatggatatggatgaagaagccatgc--tatggatatggatgaggaagccatg--atatgcacatggatgaggaagccatgatatgcacatggatgaggaagccatgatatgcacatgc
s panTro4.chr4             192745541 143 + 193495092 GC------TATGCACATGGATGAGGAAGCCGTGC--TATGGATATGGATGAGGAAGTCATGA--TATGGATATGGATGAGGAAGTCATG--ATATGGATATTGATGAGGAAGCCGTGTTATGGATATGGATGAGGAAGCCATGATATGGATATGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197846704 155 + 198332218 GCTATGGATATGGACATGGATGAGGAAGCCATGCTATATGGACATGGATGAGGAAGCCATGCTATATGGACATGGATGAGGAAGCCATGCTATATGGACATGGATGAGGAAGCCATGCTATGGACATGGATGAGGAAGTCATGCTATGGACATGG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113617980 143 + 115148730 GC------TATGGACGTGGATGAGGAAGCCGTGC--TATGGACGTGGATGAGGAAGCCGTGC--TATGGACGTGGATGAGGAAGCCGTG--CTATGGACGTGGATGAGGAAGCCGTGCTATGGACGTGGATGAGGAAGCCGTGCTATGGACGTGG
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178254834 143 + 178775436 GC------TATGGATGTGGATGAGGAAGCCACGC--TACAGACGTGAACGAGGAGGCCACGC--TATGGACGTGGATGAGGAGGCCACG--CTATGGATGTGGATGAGGAAGCCACGCTATGGATGTGCATGAGGAAGCCATGCTATGGACGTGG
i papAnu2.chr5             C 0 T 182
e mm10.chr8                 87443240 388 - 129401213 I
e canFam3.chr16             17777185   5 -  59632846 I
e calJac3.chr3             190349881   0 - 190850796 C
e chlSab2.chr7             135197583   0 + 135778131 C
e macFas5.chr5             188826671 172 + 189454096 T
e rheMac3.chr5             183447011   0 + 184069350 C

a score=35384.000000
s hg38.chr4_KI270925v1_alt     46580 49 +    555799 atgaggaagccatgc------tatggacatggatgaggaagccacga--tatggata
s panTro4.chr4             192745684 49 + 193495092 ATGAAGAAGCCATGA------TATGGATATGGATGAGGAAGCCATGC--TATGGATA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197846859 57 + 198332218 ATGAGGAAGCCATGCTATGGATATGGACATGGATGAGGAAGCCATGCTATATGGACA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113618123 49 + 115148730 ATGAGGAAGCCGTGC------TATGGACGTGGATGAGGAAGCCGTGC--TATGGACG
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178254795 49 + 178775436 ATGAGGAAGCCACGC------TATGGACGTGGATGAGGAAGCCACGC--TATGGATG
i papAnu2.chr5             T 182 C 0
e mm10.chr8                 87443240 388 - 129401213 I
e canFam3.chr16             17777185  5 -  59632846 I
e calJac3.chr3             190349881  0 - 190850796 C
e chlSab2.chr7             135197583  0 + 135778131 C
e macFas5.chr5             188826671 172 + 189454096 T
e rheMac3.chr5             183447011  0 + 184069350 C

a score=21966.000000
s hg38.chr4_KI270925v1_alt     46629 11 +    555799 tggatgaggaa
s panTro4.chr4             192745733 11 + 193495092 TGGATGAGGAA
i panTro4.chr4             C 0 I 363
s ponAbe2.chr4             197846916 11 + 198332218 TGGATGAGGAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113618172 11 + 115148730 TGGATGAGGAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183447011 11 + 184069350 TGGATGAGGAA
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178254844 11 + 178775436 TGGATGAGGAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135197583 11 + 135778131 TGGATGAGGAA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87443240 388 - 129401213 I
e canFam3.chr16             17777185  5 -  59632846 I
e calJac3.chr3             190349881  0 - 190850796 C
e macFas5.chr5             188826671 172 + 189454096 T

a score=22290.000000
s hg38.chr4_KI270925v1_alt     46640 15 +    555799 gccatgatatggata
s panTro4.chr4             192746107 15 + 193495092 GCCATGATATGGATA
i panTro4.chr4             I 363 C 0
s ponAbe2.chr4             197846927 15 + 198332218 GCCATGCTATGGACA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113618183 15 + 115148730 GCCGTGCTATGGACG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183447022 15 + 184069350 GCCATGCTATGGACG
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178254855 15 + 178775436 GCCACGCTACAGACG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135197594 15 + 135778131 GCCATGCTATGGACA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87443240 388 - 129401213 I
e canFam3.chr16             17777185  5 -  59632846 I
e calJac3.chr3             190349881  0 - 190850796 C
e macFas5.chr5             188826671 172 + 189454096 T

a score=198570.000000
s hg38.chr4_KI270925v1_alt     46655  96 +    555799 tggatgaggaagccatgctacggacatggatgaggaagccatga------tatggatatggatgaggaggccatg--atatggatatggatgaggaggccatga
s panTro4.chr4             192746122  96 + 193495092 TGGATGAGGAAGCCATGATATGGACATGGATGAGGAAGCCATGC------TATGGACATGGATGAGGAAGCCATG--ATATGGATATGGATGAGGAGGCCATGC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197846942 104 + 198332218 TGGATGAGGAAGCCATGCTATGGACATGGATGAGGAAGCCATGCTATGGATATGGACATGGATGAGGAAGCCATGCTATATGGACATGGATGAGGAAGCCATGC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113618198  96 + 115148730 TGGATGAGGAAGCCGTGCTATGGACGTGGATGAGGAAGCCGTGC------TATGGACGTGGATGAGGAAGCCGTG--CTATGGACGTGGATGAGGAAGCCGTGA
i nomLeu3.chr7b            C 0 I 182
s rheMac3.chr5             183447037  96 + 184069350 TGGACGAGGAAGCCACGCTACGGATGTGGACGAGGAGGCCACGC------TACGGACGTGGACGAGGAGGCCATG--TTATGGACGTGGATGAGGAGGCCACGC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188826499  96 + 189454096 TGGATGAGGAAGCCATGCTACGGACGTGGACGAGGAAGCCACGC------TACGGATGTGGACGAGGAGGCCACG--CTACGGACGTGGACGAGGAGGCCACGC
i macFas5.chr5             T 172 C 0
s papAnu2.chr5             178254870  96 + 178775436 TGAACGAGGAGGCCACGCTATGGACGTGGATGAGGAGGCCACGC------TATGGATGTGGATGAGGAAGCCACG--CTATGGATGTGCATGAGGAAGCCATGC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135197609  96 + 135778131 TGGATGAGGAAGCCACACTATGGACGTGGGTGAGGAAGCCACGC------TATGGATGTGGATGAGGAGGCCACG--CTACGGACGTGGACGAGGAGGCCACGC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87443240 388 - 129401213 I
e canFam3.chr16             17777185   5 -  59632846 I
e calJac3.chr3             190349881   0 - 190850796 C

a score=197230.000000
s hg38.chr4_KI270925v1_alt     46751 87 +    555799 tatggatatggatgaggaagccatgctatagacatggatgaggaagccatgatatggatatggatGAGGAGGCCATCTCTTACTCTA
s panTro4.chr4             192746218 87 + 193495092 TATGGATATGGATGAGGAAGCCATGCTATGGACATGGATGAGGAAACCATGATATGGATATGGATGAGGAGGCCATCTCTTACTCTA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197847046 87 + 198332218 TATGGACATGGATGAGGAAGCCATGATATGGACATGGATGAGGAAGCCATGCTATGGACGTGGATGAGGAAGCCATCTCTTACTCTA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113618476 87 + 115148730 TATGGACGTGGATGAGGAAGCCGTGCTATGGACGTGGATGAGGAAGCCGTGCTATGGACGTGGATGAGGAAGCCATCTATTACTCTA
i nomLeu3.chr7b            I 182 C 0
s rheMac3.chr5             183447133 87 + 184069350 TATGGATGTGGATGAGGAAGCCACGCTATGGACATAGATGAGGAGGCCACGCTATGGACGTGGATGAGGAAGCCATCTCTTACTCTG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188826595 87 + 189454096 TACGGACGTGGATGAGGAGGCCACGCTACGGACGTGGATGAGGAGGCCACGCTATGGACGTGGATGAGGAAGCCATCTCTTACTCTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178254966 87 + 178775436 TATGGACGTGGATGAGGAAGCCACGCTATGGACGTGGATGAGGAAGCCACGCTATGGATGTGGATGAGGAAGCCATCTCTTACTCTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135197705 87 + 135778131 TACGGACGTGGATGAGGAGGCCATACTATGGATGTGGATGAGGAGGCCATGCTATGGACGTGGAGGAGGAAGCCATCTCTTACTCTG
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87443240 388 - 129401213 I
e canFam3.chr16             17777185  5 -  59632846 I
e calJac3.chr3             190349881  0 - 190850796 C

a score=14668.000000
s hg38.chr4_KI270925v1_alt     46838 8 +    555799 TGACTGGG
s panTro4.chr4             192746305 8 + 193495092 TGACTGGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197847133 8 + 198332218 TGACTGGG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113618563 8 + 115148730 TGACTGGG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183447220 8 + 184069350 TGGCTTGG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188826682 8 + 189454096 TGGCTTGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178255053 8 + 178775436 TGGCTTGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135197792 8 + 135778131 TGGCTTGG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190349881 5 - 190850796 tga---ag
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87443240 388 - 129401213 I
e canFam3.chr16             17777185 5 -  59632846 I

a score=426470.000000
s hg38.chr4_KI270925v1_alt     46846 135 +    555799 TAAGACAGATGAAATTTCCTGGCACAGTAATCACTGTTACTTAATTACAGAGCACACAAATTCAggaggattcaggaatgttttctaaaatccctttgtactgacaaactatgtgcagAATA----TCAAAATATGCAG
s panTro4.chr4             192746313 135 + 193495092 TAAGACAGACGAAATTTCCTGGCACAGTAATCACTGTTACTTAATTACAGAGCACACAAATTCAGGAGGATTCAGGAATGTTTTCTAAAATCCCTTTGTACTGACAAACTATGTGCAGAATA----TCAAAATATGCAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197847141 135 + 198332218 TAAGAGAGACAAAATTTCCTGGCACAGTAATCACAGTTACTTAATTACAGAGCACACAAATTCAGGAGGATTCAGGAATGTTTTCTAAAATCCGTTTGTATTGACAAACTATGTGCAGAATA----TCAAAATATGCAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113618571 135 + 115148730 CAAGAATGACGAAATTTCCTGGCACAGTAATCACAGTTACTTAATTATAGAGCATACAAATTCAGGAGGATTCAGGAATGTTTTCTAAAATCCCTTTGTATTGACAAACTGTGTGCAGAATA----TCAAAATATGCAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183447228 134 + 184069350 TAAAAGAGATGAAATTTCCTGGCACAGTAATCACAGTTACTTAATTGCAGAGC-CACAAATTCAGGAGGATTCAGGAATGTTTTCTAAAATCCCTTTGTATTGACAAAGTATGTGCAGAATA----TCAAAATATGCAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188826690 134 + 189454096 TAAAAGAGATGAAATTTCCTGGCACAGTAATCACAGTTACTTAATTGCAGAGC-CACAAATTCAGGAGGATTCAGGAATGTTTTCTAAAATCCCTTTGTATTGACAAAGTATGTGCAGAATA----TCAAAATATGCAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178255061 134 + 178775436 TAAGAGAGATGAAATTTCCTGGCACAGTAATCACAGTTACTTAATTGCAGAGC-CACAAATTCAGGAGGATTCAGGAATGTTTTCTAAAATCACTTTGTATTGACAAAGTATGCGCAGAATA----TCAAAATATGCAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135197800 134 + 135778131 TAAGAGAGATGAAATTTCCTGGCACAGCAATCACAGTTACTTAATTGCAGAGC-CACAAATTCAGGAGGATTCAGGAATGTTCTCTAAAATCCCTTTGTATTGACAAAGTATGTGCAGAATA----TCAAAATATGCAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190349886 134 - 190850796 caggagagatgaaatttcctggcacagtaatcgcagttacctaattacagagaacataaattcaggAGGATGCAGAAATATTTTCT-AAATCCCTTCGTATTGACAATCTATGTGCAGAAAA----TCAACATGGGTAG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17777190 125 -  59632846 TATGACAGGCTGAATTTCTTGGT---GCAATCATAGTTATTTACTTACAGAGCACA----------AGGATTCAGGAGTGTCTTCT-GGATCTTTTTGTATTAACAATACATGCACAGAAAAAATCATAAAGTATGTCA
i canFam3.chr16            I 5 C 0
e mm10.chr8                 87443240 388 - 129401213 I

a score=2960647.000000
s hg38.chr4_KI270925v1_alt     46981 827 +    555799  
s panTro4.chr4             192746448 827 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197847276 826 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113618706 822 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183447362 827 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188826824 827 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178255195 827 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135197934 826 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190350020 822 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87443628 794 - 129401213  
i mm10.chr8                I 388 I 1643
s canFam3.chr16             17777315 815 -  59632846  
i canFam3.chr16            C 0 C 0

a score=601286.000000
s hg38.chr4_KI270925v1_alt     47808 177 +    555799 AAGAATTAATCTAATGTATTTGGATGTTTGGTTTTTAAAATGCAGTTAAGAAATTACATCCCCTAAACTGTTAATTAATGCTAAAGCTGGCAATTATTCTGTTTATTTGCAGCATCAG--------------------------------TCTTGGTGAATGCTCACTTTTCTTTAGGTTTTCAGGTTGTGAAAGCAATAGCATATAAA
s panTro4.chr4             192747275 177 + 193495092 AAGAATTAATCTAATGTATTTGGATGTTTGGTTTTTAAAATGCAGTTAAGAAATTACATCCCCTAAACTGTTAATTAATGCTAAAGCTGGCAATTATTCTGTTTATTTGCAGCATCAG--------------------------------TCTTGGTGAATGCTCACTTTTCTTCAGGTTTTCAGGTTGTGAAAGCAATAGCATATAAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197848102 176 + 198332218 AAGAATTAAT-TAATGTATTTGGATGTTTGGTTTTAAAAATGCAGTTAAGAAATTACATCCCCTAAACTGTTAATTAATGCTAAAGCTGGCAATTATTCTGTTTATTTGCAGCGTCAG--------------------------------TCTTGGTGAATGCTCAATTTTCTTCAGGTTTTCAGGTTGTGAAAGCAATGGCATATAAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113619528 177 + 115148730 AAGAATTAATCTAATGTAATTGGATGTTTGGATTTTAAAATGCAGTTAAGAAATTACATCCCCTAAACTGTTAATTAATGCTAAAGCTGGCAATTATTCTGTTTATTTGCAGCGTCAG--------------------------------TCTTGGTGAATGCTCAATTTTCTTCAGGTTTTCAGGTGGTGAAAGCAATGGCATATAAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183448189 176 + 184069350 AAGAATTAATCTAATGTACTTGGATGTTTGGTTTTT-AAATGCAGTTAAGAAATTACATCCCCTAAACTGTTAATTAATGCTAAAGCTGGCAATTATTCTGTTTATTTTCAGCATCAG--------------------------------TCTTGGAGAATGCTCAATTTTCTTCAGGTTTTCAGGTTGTGAAAGCAATGGCATATAAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188827651 176 + 189454096 AAGAATTAATCTAATGTACTTGGATGTTTGGTTTTT-AAATGCAGTTAAGAAATTACATCCCCTAAACTGTTAATTAATGCTAAAGCTGGCAATTATTCTGTTTATTTTCAGCATCAG--------------------------------TCTTGGAGAATGCTCAATTTTCTTCAGGTTTTCAGGTTGTGAAAGCAATGGCATATAAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178256022 176 + 178775436 AAGAATTAATCTAATGTATTTGGATGTTTGGCTTTT-AAATGCAGTTAAGAAATTACATACCCTAAACTGTTAATTAATGCTAAAGCTGGcaattattctgtttattttcagcATCAG--------------------------------TCTTGGAGAATGCTCAATTTTCTTCAGGTTTTCAGGTTGTGAAAGCAATGGCATATAaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135198760 176 + 135778131 AAGAATCAATCTAATGTATTTGGATGTTTGGTTTTT-AAATGCAGTTAAGAAATTACATCCCCTAAACTGTTAATTAATGCTAAAGCTGGCAATTATTCTGTTTATTTTCAGCATCAG--------------------------------TTTTGGAGAATGCTCAATTTTCTTCAGGTTTTCAGGTTGTGAAAGCAATGGCATATAAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190350842 175 - 190850796 AGGAATCAATCTAATGTACTT-GATGTTTGGTTTTT-AAACGCACTTAACAAATTACATCCCCCAAGCTGTTAATTGATGCTAAAGGTGGCCATTATTGTGTTTATTTTCAGCATCAG--------------------------------TCTTGGGGAATGCTCAGTTTTCTTCAGGTTTTCAGATTGTAAAGGCAATGGCATATAAA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17778130 206 -  59632846 AAACATTAATCTAATGTATTTTGATGCTTGTTTTTTTATGTGCAGTAATGAAATTACCATCCCTAAAAT-TTAATTAATGCTAAAACTGGCAATTATTCTATTTCCTCTCAACATCAGAATTTTGGTGAATGAAAAAAAAAAAAAAGAAATTTTGGTGAATGCTGGATTCTCT--GGATTTTCTAATTATAAAAGCAATGGCATGTAAA
i canFam3.chr16            C 0 I 172
e mm10.chr8                 87444422 1643 - 129401213 I

a score=380466.000000
s hg38.chr4_KI270925v1_alt     47985 149 +    555799 ----------------------------------------------------------GTGACCTTCTTTCTTTCACTTCTGCCACTGACATGG-ACTAaatgttagtatggcacatccttccgcctcctgctctttcccacctacttacgtctttatattaaagtggaaggcaagtagaggacatagaatccggtctt-----------------------------------------------------------------------------------gtttcgtac
s panTro4.chr4             192747452 149 + 193495092 ----------------------------------------------------------GTGACCTTCTTTCTTTCACTTCTGCCACTGACATGG-ACTAaatgttagtatggcacatccttccgcctcctgctctttcccacctacttacgtctttatattaaagtggagggcaagtagaggacatagaatccggtctt-----------------------------------------------------------------------------------gttttgtac
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197848278 149 + 198332218 ----------------------------------------------------------CCGACTTTCTTTCTTTCACTTCTGCCACTGACATGG-ACTAaatgttagtaaggcacatccttccgcctcctgctctttcacacctacctatgtctttatactgaagtggagggtaagtagaggacatagaatctggtctc-----------------------------------------------------------------------------------gttttgtag
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113619705 141 + 115148730 ----------------------------------------------------------CTGACTTTCTTTCTTTCACTTCTGCCACT------G-ACTAagtgttagcatggcacatcctttcgcctcctg--ctttcccacctacttatgtctttgtattaaagtggagggcaaataggggacatagaatccggtctt-----------------------------------------------------------------------------------gttttgtac
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183448365 149 + 184069350 ----------------------------------------------------------CTGACTTTCTTTCTTTCACTTCTGCCGCTGGCATGG-ACTAAGGGTTAGTGTGGCACGTCCTTCCTCCTGCCGCTCTTCCCCACTTACCTACAtctttatattaaagtggaaggcaaatagaggacatagagtccggtctt-----------------------------------------------------------------------------------gttttgtac
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188827827 149 + 189454096 ----------------------------------------------------------CTGACTTTCTTTCTTTCACTTCTGCCGCTGGCATGG-ACTAAGGGTTAGTGTGGCACGTCCTTCCTCCTGCCGCTCTTCCCCACTTACCTACatctttatattaaagtggaaggcaaatagaggacatagagtccggtctt-----------------------------------------------------------------------------------gttttgtac
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178256198 149 + 178775436 ----------------------------------------------------------ctgactttctttctttcacttctgCCGCTGGCATGG-ACTAAGGGTTAGTGTGGCACGTCCTTCCTCCTGCCGCTCTTCCCCACTTACCCACGTCTTTATATTAAAGTGGAAGGCAAATAGAGGACATAGAGTCCGGTCTT-----------------------------------------------------------------------------------GTTTTGTAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135198936 149 + 135778131 ----------------------------------------------------------CTGACTTTCTTTCTTTCACTTCTGCCGCTGGCATGG-ACTAagggttagtgtggcacatccttccacctgccgctctttcccacctacctacgtctttatattaaagtggagggcaagtagaggacatagagtccggtctt-----------------------------------------------------------------------------------gttttgtag
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190351017 148 - 190850796 ----------------------------------------------------------TGGACTTTATCTCTTTCCCTTCTGCCACTGACGTGG-gatgagggttagcacggtacatccttctaccacctgctctttccctcctccctgggacttgatatgaaagtggagtgccagcagaggacatagagtc-ggtctt-----------------------------------------------------------------------------------gttttgtac
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17778508 283 -  59632846 atgacctgagttgaaatcaggagtccaacgcttatccaactgagccacccaggtgtctcTGACTCT-TTTCTTATACTTCTGCCATACACATAGCattagatgttggcaccgtacaacttt-------ctgctttcttttacttttcatgagtttcatatttaagtgggattcaagcagacaatatatagttgggtctttaaaaaaaaaaaaaaagatttttatttatttattcatgagagacacgagagagaggcagagacacaggcagagggagaagcaggcttcatgc
i canFam3.chr16            I 172 I 101
e mm10.chr8                 87444422 1643 - 129401213 I

a score=651723.000000
s hg38.chr4_KI270925v1_alt     48134 215 +    555799 ------------------------tcact-ctgatatcctttctttt---aattggcatatttagaccattcatgtttaatgagattattgataaaattggattaatatttaccatgtttgaagctg-tttttcattttttgaatttattccttgtttctttgagtttcccctctttttctttcttctcttg--------------tttatatgattttattttatctgctatttgaccatatt-attata---ttttttaa
s panTro4.chr4             192747601 218 + 193495092 ------------------------tcact-ctgatatcctttctttt---aattggcatatttagaccattcatatttaatgagattattgataaaattggattaatatttaccatgtttgaagctg-tttttcattttttgaatttattccttgtttctttgagtttcccctctttttctttcctctcttgt-----tta-----tttatatgattttattttatctgctatttgaccatatt-attata----tttttaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197848427 223 + 198332218 ------------------------tcact-ctgatatcctatctttt---aattagcatatttagaccattcatgtttaatgagattattgataaaattggattaatatttaccatgtttgaagctg-tttttca-tttttgaatttattccttgtttctttgagtttcccttctttttctttcttctcttgtttaaatta-----tttatatgattttattttatctgctatttgaccatatt-attata---ttttttaa
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113619846 222 + 115148730 ------------------------tcact-ctgatatcctgtatttt---aattagcatatttagaccattcatgtttaatgagattattgataaaattggattaatattttccatgtttgaagctg-tttttcattttttgaatttattccttgtttctttgagtttccc--ctttttctttcttctcttatttaaatta-----tttatatgattttattttacctgctatttgaccatatt-attata---ttttttaa
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183448514 225 + 184069350 ------------------------tcattcctgatatcctgcctttt---aattagcatatttagaccattcatgtttaatgagatgattgataaaattggattaatatttaccatgtttgaagatg-tttttcattttttgaatttattccttgtttctttgagtttcccctttttttctttcttctcttgtttaaatta-----tttatatgattttattttatcttctctttcaccatatc-attata---ttttttaa
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188827976 225 + 189454096 ------------------------tcattcctgatatcctgcctttt---aattagcatatttagaccattcatgtttaatgagatgattgataaaattggattaatatttaccatgtttgaagatg-tttttcattttttgaatttattccttgtttctttgagtttcccctttttttctttcttctgttgtttaaatta-----tttatatgattttattttatcttctctttcaccatatc-attata---ttttttaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178256347 225 + 178775436 ------------------------TCATTCCTGATATCCTGCCTTTT---AATTAGCATATTTAGACCATTCATGTTTAATGAGATGATTGATAAAATTGGATTAATATTTACCATgtttgaagatg-tttttcattttttgaatttattccttgtttctttgagtttcccctttttttctttcttctcttgtttaaatta-----tttatatgattttattttatcttctctttcaccatatc-attata---ttttttaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135199085 225 + 135778131 ------------------------tcactcctgatatcctgcctttt---aattagcatatttagaccattcatgtttcatgagatgattgataaaattggattaatatttaccatgtttgaagatg-tttttcattttttgaatttattccttgtttctttgagtttcccctttttttctttcttctcttgtttaaataa-----tttatatgattttactttatcttctctttcaccatatc-attatt---ttttttaa
i chlSab2.chr7             C 0 I 1597
s calJac3.chr3             190351165 188 - 190850796 ------------------------tcact-ctgatatcctgtctttt---gattagtgtatttagaccattcacgtttaatgagattcttcgtaaaattggattaatatttagcatgtttgaaactgctttttcatttttt---------------------------------cctttctttcttctcttgtttaaatta-----tttatatgattctattttatctgctctttgACCATATT-ATA-------TTTTTAA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17778892 255 -  59632846 tctctcttttttttttttttttaattatt-ctgataatctctcttttttatattagtgtagttagaccactcatatttaaagtgattactgatataattggattaatatctaaaatgtttgtgatta-ttct--atcccttgcatttgtgttttgttcctttttgtttac---tcttttttgtcttgtcttattttaattaagcattttatgtgctactattttaccacctctgctagcatatcaattatgcctctttttaa
i canFam3.chr16            I 101 C 0
e mm10.chr8                 87444422 1643 - 129401213 I

a score=20113.000000
s hg38.chr4_KI270925v1_alt     48349 10 +    555799 gacaaatctt-
s panTro4.chr4             192747819 10 + 193495092 gacaaatctt-
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197848650 10 + 198332218 gacaaatctt-
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113620068 10 + 115148730 gacaagtctt-
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183448739 10 + 184069350 aacaaatctt-
i rheMac3.chr5             C 0 I 1585
s macFas5.chr5             188828201 10 + 189454096 aacaaatctt-
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178256572 10 + 178775436 aacaaatctt-
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190351353 10 - 190850796 GACAAACTTT-
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17779147 10 -  59632846 -aaaaattgtc
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87444422 1643 - 129401213 I
e chlSab2.chr7             135199310 1597 + 135778131 I

a score=2395.000000
s hg38.chr4_KI270925v1_alt     48359 2 +    555799 ag
s panTro4.chr4             192747829 2 + 193495092 ag
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197848660 2 + 198332218 ag
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113620078 2 + 115148730 ag
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188828211 2 + 189454096 gg
i macFas5.chr5             C 0 I 1584
s papAnu2.chr5             178256582 2 + 178775436 gg
i papAnu2.chr5             C 0 I 1587
s calJac3.chr3             190351363 2 - 190850796 AG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17779157 2 -  59632846 at
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87444422 1643 - 129401213 I
e chlSab2.chr7             135199310 1597 + 135778131 I
e rheMac3.chr5             183448749 1585 + 184069350 I

a score=60419.000000
s hg38.chr4_KI270925v1_alt     48361 73 +    555799 tggcttcttgaaagtatgtaacacacagttttaaataatttaagtctatctgcaatagcactatcctacttca
s panTro4.chr4             192747831 73 + 193495092 tggcttcttgaaagtatgtaacacacagttttaaataatttaagtctatctgcaatagcactatcctacttca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197848662 73 + 198332218 cggcttcttgaaagtatgtaacacacagttttaaataattgaagtctatctgcaatagcactatcctacttca
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113620080 73 + 115148730 tggcttcttgaaagtatgtaacacacagttttaaataatctaagtctatctgcaatagcactatcctacttca
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190351365 66 - 190850796 TGACTTCTTGAAACTATGAAACACACAGTTTTAAAT------AGTCTATCC-CAACAGCACTATACTATTCCA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17779159 64 -  59632846 ggatttctta-----atgtaatgtacatattaagccagtttcaccttc----aaatggcactatactacttca
i canFam3.chr16            C 0 I 112
e mm10.chr8                 87444422 1643 - 129401213 I
e chlSab2.chr7             135199310 1597 + 135778131 I
e papAnu2.chr5             178256584 1587 + 178775436 I
e macFas5.chr5             188828213 1584 + 189454096 I
e rheMac3.chr5             183448749 1585 + 184069350 I

a score=158097.000000
s hg38.chr4_KI270925v1_alt     48434 198 +    555799 catgtactgtgaatttgtggagcaggttcaccgtgcactggttagcaacttgtctgagtgcagtgagacagagcacgctcaggggcaacaagtcaagactgagaattatcacatacaacagaaatgtaggattcatcatgagctagtccctcaaagctcaggaaagctgcatagagcagatggagccttgtctgtgtg
s panTro4.chr4             192747904 193 + 193495092 catgtactgtgaatttgtggagcaggttcaccgtgcactggttagcaacttgtctgagtgcagtgagacagagcacgctcaggggcaa-----caagactgagaattatcacatacaacagaaatgtaggattcatcatgagctagtccctcaaagctcaggaaagctgcatagagcagatggagccttgtctgtgtg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197848735 198 + 198332218 catgtactgtgaatttgtggagcaggttcaccatgcagtgattagcaacttgtctgaaagcagtgagacagagcacactcaggggcaacaagtcaagactgagaactatcacatacaacagaaatgtaggattcatcatgagctagtccctcaaagctcaggaaagctgcatagatcagatggagccttgtctgtgtg
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113620153 198 + 115148730 catgtactgcgaatttgtggagtaggttcaccgtgcactggttagcaacttgtctgagtgcagtgagacagagcacactcaggggcaacaagtcaagactgagaattatcacatataacagaaatgtaggattcatcatgagctagtccctcaaagctcaggaaagctgcatagagcagatggagtcttgtctgtgtg
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190351431 191 - 190850796 CATGTGCTGTGAATTtgtgcagcaggttcactgtgcactggtcagcaacttgtctcagtccagtgtgaca-------ctcatgggcaatgagtcagaacagagaattatcacagacaacagaaacctggggttcatcatgagctagtccctcaaaactcaagaaagctgcacagggcagatggagtcttgtctgtgtg
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87444422 1643 - 129401213 I
e canFam3.chr16             17779223 112 -  59632846 I
e chlSab2.chr7             135199310 1597 + 135778131 I
e papAnu2.chr5             178256584 1587 + 178775436 I
e macFas5.chr5             188828213 1584 + 189454096 I
e rheMac3.chr5             183448749 1585 + 184069350 I

a score=63103.000000
s hg38.chr4_KI270925v1_alt     48632 81 +    555799 tgacccacttaccatgcagctgaggaatcctggaaataaggctgccctggg----atttacaccccaag--agtcacatgaagtgct
s panTro4.chr4             192748097 81 + 193495092 tgacccacttaccatgcagctgaggaatcctggaaataaggctgccctggg----atttacaccccaag--agtcacatgaagtgct
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197848933 81 + 198332218 tgacccacttatcatgcagctgaggaatcctgtaaataaggctgccctggg----atttacaccccaag--agtcacatgaagtgct
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113620351 81 + 115148730 tgaccgactttccatgcagctgaggaatcctggaaataaggctgccctggg----atttacaccccaag--agtcacatgaagtgct
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190351622 81 - 190850796 tgacccacttaccctgcagctgaggaacatgggaaataaacacaccctggg----attcatatcccaag--agtcacatgaAGTTCT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17779335 82 -  59632846 tgaatccctcacctccaatgtgatgggatttagagatagggc--ctttgggtggtaattaaacttaaaagtagtcacgag-ggtg--
i canFam3.chr16            I 112 C 0
e mm10.chr8                 87444422 1643 - 129401213 I
e chlSab2.chr7             135199310 1597 + 135778131 I
e papAnu2.chr5             178256584 1587 + 178775436 I
e macFas5.chr5             188828213 1584 + 189454096 I
e rheMac3.chr5             183448749 1585 + 184069350 I

a score=305827.000000
s hg38.chr4_KI270925v1_alt     48713 498 +    555799  
s panTro4.chr4             192748178 498 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197849014 498 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113620432 494 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s canFam3.chr16             17779417 528 -  59632846  
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87444422 1643 - 129401213 I
e calJac3.chr3             190351703   0 - 190850796 C
e chlSab2.chr7             135199310 1597 + 135778131 I
e papAnu2.chr5             178256584 1587 + 178775436 I
e macFas5.chr5             188828213 1584 + 189454096 I
e rheMac3.chr5             183448749 1585 + 184069350 I

a score=21942.000000
s hg38.chr4_KI270925v1_alt     49211 39 +    555799 tttctctgagaaagtctttatttcttcttcactctgtaa
s panTro4.chr4             192748676 39 + 193495092 tttctctgagaaagtctttatttcttcttcactctgtaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197849512 39 + 198332218 tttctctgagaaagtctttatttcttcttcactctgtaa
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113620926 39 + 115148730 tttctctgagaaagtctttatttcttcttcactctgtaa
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87444422 1643 - 129401213 I
e canFam3.chr16             17779945  0 -  59632846 C
e calJac3.chr3             190351703  0 - 190850796 C
e chlSab2.chr7             135199310 1597 + 135778131 I
e papAnu2.chr5             178256584 1587 + 178775436 I
e macFas5.chr5             188828213 1584 + 189454096 I
e rheMac3.chr5             183448749 1585 + 184069350 I

a score=124205.000000
s hg38.chr4_KI270925v1_alt     49250 164 +    555799 gaatcatttctcttgttatagaattttatgttggtgtttcttcttctttcattatcctctcccctccacaatcctcttgcttgcatgattcctgatgagaagtcatctgtaattcttatccttgcctttctatagataaaatggcccttgcccccggttctttc
s panTro4.chr4             192748715 164 + 193495092 gaatcgtttcccttgttatagaattttatgttggtgtttcttcttctttcattatcctctcccctccacagtcctcttgcttgcatgattcctgatgagaagtcatctgtaattcttatccttgcctttctatagataaaatggcccttgcccctggttctttc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197849551 164 + 198332218 gaatcctttctcttgttatagaattttacgttggtgcttcttcttctttcattatcctctcccctccacaatcctcttgcttgcatgatttctgatgagaagtcatctgtaattcttatccttgcctttctgtagataaaatggcccctgccccgggttctttc
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113620965 162 + 115148730 gaatcctttctcttgttatagaattttacgttggtgttccttct--tttcactatcctctcccctccacagtcctcttgcttgcatgattcctgatgagaagtcatctgtaactcttatccttgcctttctatagataaaatggcccctgacccaggttctttc
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190351703 158 - 190850796 gaacaatttctctcattacagaatgttaagttggtgtttcttct----tcgttctcctctcccctccacactcctcttgctcacatgatttctgatgagatgtcatctattattcttatccttgcctttccataaacaaaatagcctctg--ccaggctctttt
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87444422 1643 - 129401213 I
e canFam3.chr16             17779945   0 -  59632846 C
e chlSab2.chr7             135199310 1597 + 135778131 I
e papAnu2.chr5             178256584 1587 + 178775436 I
e macFas5.chr5             188828213 1584 + 189454096 I
e rheMac3.chr5             183448749 1585 + 184069350 I

a score=1705.000000
s hg38.chr4_KI270925v1_alt     49414 2 +    555799 aa
s panTro4.chr4             192748879 2 + 193495092 aa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197849715 2 + 198332218 aa
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113621127 2 + 115148730 aa
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178258171 2 + 178775436 aa
i papAnu2.chr5             I 1587 C 0
s calJac3.chr3             190351861 2 - 190850796 ca
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87444422 1643 - 129401213 I
e canFam3.chr16             17779945 0 -  59632846 C
e chlSab2.chr7             135199310 1597 + 135778131 I
e macFas5.chr5             188828213 1584 + 189454096 I
e rheMac3.chr5             183448749 1585 + 184069350 I

a score=2457.000000
s hg38.chr4_KI270925v1_alt     49416 4 +    555799 gatt
s panTro4.chr4             192748881 4 + 193495092 gatt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197849717 4 + 198332218 gatt
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113621129 4 + 115148730 gatt
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178258173 3 + 178775436 aat-
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190351863 4 - 190850796 gatt
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17779945 4 -  59632846 ggct
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87444422 1643 - 129401213 I
e chlSab2.chr7             135199310 1597 + 135778131 I
e macFas5.chr5             188828213 1584 + 189454096 I
e rheMac3.chr5             183448749 1585 + 184069350 I

a score=1477195.000000
s hg38.chr4_KI270925v1_alt     49420 467 +    555799 tctttttgaaattgcttttctactgtttaaatatgatacccctagaagtagggctttgttttccagtatttat-cttcttgatgttctctgagctaacctgataggtggtttcatgtcttccgtacattttggaaagtgctttgccatcattacttcaaatatttcttctgctctattctctcttttttgtct-tttggtaatcaagttaaacgtatgttttgccttttgaaattgtcccacagctgttggatgttctggggttatttttctcgcttattttctacttgcatttcagtttggaatgtttctattgacatatcttcaagctcattagtttttttcctcagct-atttcaatctactgtggagatcatc-aaggcactcttaatttctgttactgtggctttgatttccaacattttcttttga-tttttaaagtctccttcactcagctaacatgta---tctgtt----
s panTro4.chr4             192748885 467 + 193495092 tctttttgaaattgcttttctactgtttaaatatgatacccctagaagtagggctttgttttccagtatttat-cttcttgatgttctctgagctaacctgataggtggtttcatgtcttccgtacattttggaaagtgctttgccatcattacttcaaatatttcttctgctctattctctcttttttgtct-tttcgtaatcaagttaaatgtatgttttgccttttgaaattgtcccacagctgttggatgttctggggttatttttctcgcttattttctacttgcatttcagtttggaatgtttctattgacatatcttcaagctcattagtttttttcctcagct-atttcaatctactgtggagatcatc-aaggcactcttaatttctgttactgtggctttgatttccaacattttcttttga-tttttaaagtctccttcactcagctaacatgta---tctgtt----
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197849721 467 + 198332218 tctttttgaaattgcttttctactgtttaagtatgatacccctagatgtagggctttgttttccagtatttat-cttcttaatattctctgagctaacctgataggtggtttcatgtcttctgtacattttggaaagtgctttgccatcattacttcaaatatttcttctgctctattcgctcttttttgtct-tttggtaatcaagttaaatgtatgttttgccttttgaaattgtcccacagctgttggatgttctggggttctttttctcacttgttttctacttgcatttcagtctggaatctttctattgacatatctccaagctcattagattttttcctcagct-atttcaatctactgcagagatcatc-aaggcactcttaatttctgttactgtggctttgatttctaacattttcttttga-tttttaaagtctccttcactcagctaacatgta---tctgtt----
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113621133 467 + 115148730 tctttttgaaattgcttttctactgtttaaatatgatacccctagatgtagggctttgttttccagtatttat-cttcttaatgttctctgagctaacctgataggtggtttcatgtcttccatacattttggaaagtgctttgccatcattgcttcaaatatttcttctgctctattctctcttttttgtca-tttggtaatcaagttaaatgtatgttttgccttttgaaattgtcccacagctcttggatgttctggggttctttttctcgcttgttttctacttgcatttcagtttggaatctttctattgacatatcttcaagctcattagtttttttcctcagcc-atttcaaactactgcagagatcatc-aaggcactcttaatttccattaccgtggttttgatttctaacattttcttttga-tttttaaagtctcctttactcagctaacatgta---tctgtt----
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183450334 462 + 184069350 tctttttgaaattgcttttctactgtttaaatatgacacccgtagatgtagggttttgttttccagtatttgt-cttcgtgatcttctctgagctaacctggtaggtggtttcatgtcttccatacattttggaaagtgctttgccatcattacttcaaatatttcttctgctctattctctcttttttgtcc-tttggt----aagttaaatgtatgttctgccttttgcaattgtcccacagttgttggatgttctggggttctttttctcatttgttttctacttgcatttccatttggaatctttctattggcatatcttcaagctcatta-attttttcctcagct-atttcaatctactgtggagatcctc-aaggcgctcttaatttctgttgctgtggttttgatttctaacattttcttttga-tttttaaagtctccttcactcagttaacatgta---tctctt----
i rheMac3.chr5             I 1585 C 0
s macFas5.chr5             188829797 462 + 189454096 tctttttgaaattgcttttctactgtttaaatatgacacccctagatgtagggttttgttttccagtatttgt-cttcgtgatcttctctgagctaacctggtaggtggtttcatgtcttccatacattttggaaagtgctttgccatcattacttcaaatatttcttctgctctattctctcttttttgtcc-tttggt----aagttaaatgtatgttctgccttttgcaattgtcccacagttgttggatgttctggggttctttttctcatttgttttctacttgcatttccatttggaatctttctattggcatatcttcaagctcatta-tttttttcctcagct-atttcaatctactgtggagatcctc-aaggcgctcttaatttctgttgctgtggttttgatttctaacattttcttttga-tttttaaagtctccttcactcagttaacatgta---tctctt----
i macFas5.chr5             I 1584 C 0
s papAnu2.chr5             178258176 462 + 178775436 tctttttgaaattgCTTTTCTACTGTTTAAATATGACACCCCTAGATGTAGGGTTTtgttttccagtatttgt-ctttgtGATCTTCTCTGAGCTAACCTGGTAGGTGGTTTCATGTCTTCCATACATTTTGGAAAGTGCTTTGCCatcattacttcaaatatttcttctgctctattctctcttttttgtcc-TTTGGT----AAGTTAAATGTATGTTTTGCCTTTTGCAATTGTCCCACAGTTGTTGGATGTTCTTGGGTTCTTTTTCTCGCTTGTTTTCTACTTGCATTTCCATTTGGAATCTTTCTATTGACATATCTTCAAGCTCATTA-ATTTTTTCCTCAGCT-ATTTCAGTCTACTGTGGAGATCCTC-AAGGTGCTCTTAATTTCtgttactgtggttttgatttctaacattttcttttga-tttttaaagtctcCTTCACTCAGTTAACATGTA---TCTCTT----
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135200907 462 + 135778131 tctttttgaaattgcttttctactatttaaatatgacacccctagatgtagggttttgttttccagtatttgt-cttcatgatcttctctgagctaacctgataggtggtttcatgtcttccatacattttggaaagtgttttgccatcattacttcaaatatttcttctgctctattctctcttttttgtcc-tttggt----aagttaaatgtatgttttgccttttgcaattgtcccacagttgttggatgttctggggttcttcttctcacttgttttctacttgcatttccatttggaatctttctattgacgtatcttcaagctcatta-tttttttcctcagct-atttcaatctactgtggagatcctc-aaggcactcttaatttctgttgctgtggttttgatttctaacattttcttttga-tttttaaagtctccttcactcagttaacatgta---tctctt----
i chlSab2.chr7             I 1597 C 0
s calJac3.chr3             190351867 459 - 190850796 actttttgaaagtggtattctactgtttaaatatgatatccctggatgtagagcttcgttttccagcatttat-ctttttgatgttctcttagctaacctgatacgtggtttcacgtcttctgaacgctttggaaagtgctctgccatcattacttcaaatatttcttctgctctattctccctttgttgtccttttggtaatcaagttaaatttacgttatgtcttttgcaattgtctcacagttattggatgttctgggggtttttttctcacttgttttctatttgcatttcaatttggaatctttctattgatatgtcctcaagctcattt-attttttccacagct-atttcagtctactgta-------------gcattgttaatttctgttactgtggttttgatttctaagatattcttcttattttttaaagtatctgtcactcagctaacatatatcttctctt----
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17779949 440 -  59632846 --tctttg-------tttcctgcattttgaatatgataactctg--tgtatagatttgttttt--atatttatccttctgggtattctctgagctaaccagatttgtgatttgatatctct----aattctgggaaattctc-accatcatt-----aaatatttcttctgatctcttct-tcttttctctc--tctgataatctaattagatgtatgttatatcttttgcagttgtcccacaattcttgggtattctggggtttttattatta------ttcttttcacatttcagtttagaatgtttctactaacgtgtattc-agctcacta-attttttccgcaggtgagttttatttgctgataaacccattaaaggcattcttcatttctgttactatatttttcatttcttggactttcttttag-ttatttgagtttccacttctctgctaatgt-ta---tccctctgtt
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87444422 1643 - 129401213 I

a score=1264656.000000
s hg38.chr4_KI270925v1_alt     49887 464 +    555799 ttgacacgttatttgattttttattagattccttaagatattaattatagttgctttacatttcctgtttgctaattccaaaattcgtctttctgatactgattctaatgcttgccttgtatcttcaatctataatttttCTTGGCATTGTCTGTAATATTTGATG-AAAGCCAGT-AAATAGGTAGAAAGat--agagatacatagaaaatagagatagaggtatatataaacatacagatatacatcaataggtgtacatctatatctatacatatataaataccaacacatacattacatataagtat--------ac--------acatacacacacacaacatGggaactttggtaaattggtcttcagtgcgaggatttatgtcaatttggcaggtcttggactttgtttagtgtttgttgtagctatggatgccagaggtttcaaatacctctggtggccttgtttttgtgtctttg
s panTro4.chr4             192749352 474 + 193495092 ttgacacgttatttgattttttattagattccttaagatattaattatagttgctttacatttcctgtctgctaattccaaaattcgtctttctgatactgattctaatgcttgccttgtatcttcaatctataatttttCCTGGCATTGTCTGTAATATTTGATG-AAAGCCAGt-aaataggtagaaagatagagagatacatagaaaatagagatagaGGtatatataaacatacagatatacatcaataggtgtacatctatatctatacatatataaataccaacacatacattacatataagtatacacatacac--------acatacacacacacaACATGggaactttggtaaattggtcttcagtgcgaggatttatgtcaatttggcaggtcttggactttgtttagtgtttgttgtagctatggatgccagaggtttcaaatacctctggtggccttgtttttgtgtctttg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197850188 460 + 198332218 ttggcatgttatttgattttttattagattccttaagatattaatcatagttgctttacatttcctgtctgctaattccaaaattcgtctttctgatactgattctaatgcttgccatgtatcttcaatctatactttttCTTGGCGTTATCTGTAGTATTTGATGAAAAGCCAGTAAAACAGGTAGAAAGATAGAGAGATACATAGATAATAGAGATAGAGGtatatatagacacatagatatacatcaataagtatacatctacatctatac----ataaataccaacacatacattacatataagtat--------------------acacacacaCACAACATGggaactttggtaaattggtcttcagtgcaaggatttatgtcaatttggcaggtcttggactttgtttagtgtttgttgtagctatgggtgccagaggtttcaaatacctctggtggccttgtttttgtgtctttg
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113621600 482 + 115148730 ttggcatgttatttgattttttattagattccttaagatattaatcatagttgccttacatttcctgtctgctaattccaaaattcatccttctgatactgattctaatgcttgccttgtatcttcaatctataatttttCTTGGCATTATCTGTAATATTTGATG-AAAGCCAGt-aaataggtagaaagatacagagatacatagataatagtgatagaggtatatatagacatatagatatacatcaatgggtatacatctatatctatacatatataaatgccaccacattcattacatataagtatacacacacacacacacaaacacacacacacacaACATaggaactttggtaaattggtcttcagtgtgaggatttatgtcaattcagcaggtcttggactttgtttagtgtttgttgtagctatgggtgtcagaggtttcaaatacctctggtggccttgtttttgtgtcttTG
i nomLeu3.chr7b            C 0 I 22
s rheMac3.chr5             183450796 474 + 184069350 ttggcatgttatttgatgttttattagattccttaagatattattcatagttgctttacatttcctgtcggctaattccaaaattcgtccttctgatactggttctaatgcttgccttgtatcttcaatctataatttttcttggcattatctgtaatatttattg-aaagctagt-aaataggtagat----agagagattcatagataatagagacagaggtacatataaacatatagatatacatcaatggatatacatctatatctatacatatataaataccaacacatacattacatgtaAGT----acacacacacacacacacacacacacacacaAAATGggaacttaggtaaattggtcttcagtgctaggatttatgtcaattttgcaggtcttggagtttgtttagtgtttgttgtagctatgggtgccagaggttttaatcgcctctgatggccttgttcttgtatctttg
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188830259 468 + 189454096 ttggcatgttatttgatgttttattagattccttaagatattattcatagttgctttacatttcctgtcggctaattccaaaattcgtccttctgatactggttctaatgcttgccttgtatcttcaatctataatttttcttggcattatctgtaatatttattg-aaagctagt-aaataggtagat----agagagattcatagataatagagacagaggtacatataaacatatagatatacatcaatggatatacatctatatctatacatatataaataccaacacatacattacatGTAAGT----------acacacacacacacacacacacacaaaatgggaacttaggtaaattggtcttcagtgctaggatttatgtcaatttcgcaggtcttggagtttgtttagtgtttgttgtagctatgggtgccagaggttttaatcgcctctgatggccttgttcttgtatctttg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178258638 462 + 178775436 TTGCCATGTTATTTGATGTTTTATTAGATTCCTTAAGATATTAATCATAGTTGCTTTACATTTCCTGTCAGCTAATTCCAAAATTTGTCCTTCTGATACTGGTTCTAATGCTTGCCTTGTATCTTCAATCTATAATTTTTCTTGGCATTATctgtaatatttattg-aaagctaGT-AAataggtagat----agagagattcatagataatagagacagaggtacatataaacatatagatatacatcaatggatatacatctatatctatacatatataaataccaacacatacattacatgtaagt----------------atacacacacacacacacaaaatgggaaCTTAGGTAAATTGGTCTTCAGTGCTAGGATTTATGTCAATTTCGCAGGTCTTGGAGTTTGTTTAGTGTTTGTTGTAGCTATGGGTGCCAGAGGTTTTAAACGCCTCTGATGGCCTTGTTCTTGTATCTTTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135201369 482 + 135778131 ttggcatgttatttgatattttattagattccttaagatattaatcatagttgctttacatttcctgtcggctaattccaaaattcgtccttctgatactggttctaatgcttgccttgtatcttcaatctataatttttcttggcattatctgtaatatttattg-aaagctagt-aaataggtaggtagagagagagattcatagataatagagacagaggtacataTAAACACatagatatacatcaatgggtatatatctatatctatacatatataaataccaacacatacattacatgtaagtatacacatacacacacacacacatacacacacacaAAATGggaacttaggtaaattggtcttcagtgctaggatttatgtcaattttgcaggtcttggagtttgtttagtgtttgttggagctatgggtgccaggggtttcaaatgcctctgatggccttgtttttgtatctttg
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190352326 456 - 190850796 ttggcatgttgttcaattttttattagatttcttaagatattaatcacagttgtttcacatttcctgtctgctaattctaaaattggtcctg-tgatgctgtttctaatgcttgctgtgtatcttccatctgtaatttttattggaatgatctgtaatatttgttg-aaagccagT-AAATATGTAGAT----AGAGAGATACATAGATAAGA---ATAGAGCTATATACAGACATATAGCTGTACATCAATGGGTATACAACTA----TGTAAGTGTACAAACACCAACATACACATTACAGGTAAGT----------ACACACACACAGACACACACAta-aaaatgggaccttaggtaagctggtctttagtgtgagggtttatgtcagtttggcaggccttggactctgcttggtgtctgctgtagcgatgggtgccagaggtgacaaacatctccggtggcctcatttttgtctcg---
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87444422 1643 - 129401213 I
e canFam3.chr16             17780389   0 -  59632846 C

a score=883344.000000
s hg38.chr4_KI270925v1_alt     50351 422 +    555799 gttgttttagtgtttctgtaagataaagcctgtctttcagctctttcacctggaatcaattgttaatacactggagtctgttggtgttgcagttaaatgttggggagagaagcacactgtagtctcgtgtgtaagtatgagtgttttagtggcactttgtcccagggctgtgacctttataagtgtttcttag-atttccttcctccctcaatggtgataaaagaaagcaagaagtggctggc-ttatagatatattcttgccccaggaggaatggggccctggcagtctttttttcccggagagtaggcttttgttatagagaagaccctgggcatgttttataaagattacctttcccttccttctgccacagcaccaggggatctctcttgctttccaccttgagaccctggtggcattcc
s panTro4.chr4             192749826 422 + 193495092 gatgttttagtgtttctgtaagataaagtctgtctttcagctctttcacctggaatcaattgttaatacactggagtctgttggtgttgcagttaaatgttggggagagacgcacactgtagtctcgtgtgtaagtatgagtgttttagtggcactttgtcccagggctgtgacctttataagtgtttcttag-ctttccttcctccctcaatggtgataaaagaaagcaagaggtggctggc-ttatagatatattcttgccccaggaggaatggggccctggcagtctttttttcccggagagtaggcttttgttatagagaataccctgggcatgttttataaagattacctttcccttccttctgccacagcaccaggggatctctcttgctttccaccttgagaccctggtggcattcc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197850648 415 + 198332218 gttgttttagtgtttctgtaagataaagtctgtctttcagctctttcacctggaatcaactgttactatactggagcctgtttgttttgcagtaaaatgttggggagagaagcacactgtagtctcatgtgtaagtatgagtgttttagtggcactttgtcccaggactgtg-cctttataagtgtttcttag-ctttccttcctgcctcaatggtgataaaagaaggcaagaggtggctggc-tcatagatatattcttgccccagaaggaatggggccctggcagtcttttttt-ccagagagcaggcttt-----aacagaagagcctgggcatattttgtaaagattacctttctcttccttctgccacagcaccaggggatctctcttgctttctaccttgagaccctggtggcattcc
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183451270 417 + 184069350 gtggttttagtgttcctgtaagataaagtctgtctttcagctctttcacctggaatcgattgttactatcctggagcctgttggtgttgcagtaaaatgttggggagagaagcacactctagtctcctgtgtaagtatgagtgttttagtggcactttgtcccagg-ctgtgacctttataagtgtttcttaa-ctttccttccccgctcagtggtgataaaagaaggc-agaggtggctggc-tcatagatacattcctgccgcaggaggactggggccctggcagtcttttttc-ccggagagcaggctttgggtatagagaagaccctgggcatattttatgaagattacctttcccttccttctgccgcagcacc-ggggatctctcttgccttccaccttgagg-cctggtggcattcc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188830727 417 + 189454096 gtggttttagtgttcctgtaagataaagtctgtctttcagctctttcacctggaatcgattgttactatcctggagcctgttggtgttgcagtaaaatgttggggagagaagcacactctagtctcctgtgtaagtatgagtgttttagtggcactttgtcccagg-ctgtgacctttataagtgtttcttaa-ctttccttccccgctcagtggtgataaaagaaggc-agaggtggctggc-tcatagatacattcctgccgcaggaggactggggccctggcagtcttttttc-ccggagagcaggctttgggtatagagaagaccctgggcatattttatgaagattacctttcccttccttctgccgcagcacc-ggggatctctcttgccttccaccttgagg-cctggtggcattcc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178259100 415 + 178775436 GTGGTTTTAGTGTTCCTGTAAGATAAAGTCTGTCTTTCAGCTCTTTCACCTGGAATCGCTTGTTACTATCCTGGAGCCTGTTGGTGTTGCAGTAAAATGTTGGGGAGAGACGCACACTCTAGTCTCCTGTGTAGGTATGAGTGTTTTAGTGGCACTTTGTCCCAGG-CTGTGACCTTTATAA--GTTTCTTAA-CTTTCCTTCCCCGTTCAATGGTGATAAAAGAAGGC-AGAGGTGGCTGGC-TCATAGATACATTCCTGCCGCAGGAGGACTGGGGCCCTGGCAGTCTTTTTTC-CCGGAGAGCAGGCTTTGGTTATAGAGAAGACCCTGGGCATATTTTATGAAGATtacctttcccttccttctgccaCAGCACT-GGGgatctctcttgcctgccaccttGAGG-CCTGGTGGCATTCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135201851 417 + 135778131 gtggttttagtgttcctgtaagataaagtctgtctttcagctctttcacctggaatcgattgttactatcctggagcctgttggtgttgcagtgaaatgttggggagagaagcacactcaagtctcctgtgtaagtatgagtgttttagtggcactttgtcccagg-ctgtgacctttataagtgtttcttaa-ctttccttctccgctcaatggtgataaaagaaggc-agaggtggctggc-tcatagatactttcctgccgcaggaggaatggggccctggcagtcttttttc-ccggagagcaggctttggttatagagaagaccctgggcatattttgtaaagattacctttcccttccttctgccacagcacc-ggggatctctcttgccttccaccttgagg-cctggtggcattcc
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190352782 414 - 190850796 gttgtttt-gcgtttctgtaacataaagtctgtctttcagctccttcgcctggaataagctgtta-----ctggag-ctcttggcgttgcagtagaaagttggggagagaggcacact--agtctcctgtgtaagtactaatgtttcagtgccactttgtcccacgcctgtgacctttataagtgattcttagtttttctttcctccctcaatggtgatacaagaaggcaagaggtagctggtatcatagatccactctcaccccaggaggaacggggccctggcagtctttttgtcctggagagcaggcttttgttacagagaaggccctgggcacagtttataaagtttccctttcccttcattgtgccatagcaccagggggtccctc-ggctttccactgtgagactgcagtggcatccc
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87444422 1643 - 129401213 I
e canFam3.chr16             17780389   0 -  59632846 C
e nomLeu3.chr7b            113622082  22 + 115148730 I

a score=647359.000000
s hg38.chr4_KI270925v1_alt     50773 308 +    555799 gagttccaactgggttgg-ggcagtgaaaagggggccctaacactagggtctcca-gaaagttttcactctcagaacagtctgcattcagcctccagcaattcatcaaaattaccacctacatgtccatgcaggtttatgactccaactgctcctgctctagggaggctgatcttggtcatgatgatctgcattcagctgcatcttcagctttgggcacca-ggcagccctgtgacctcaggtcttcaaggagtctaagaaaagtaatt----gatttatagtttgttcagtt--tttttcttattgtaagaacaaa
s panTro4.chr4             192750248 308 + 193495092 gagttccaactgggttgg-ggcagtgaaaagggggccctaacactagggtctcca-gaaagttttcactctcaaaacagtctgcattcagcctccagcaattcatcaaaattaccacctacatgtccatgcaggtttatgactccaactgctcctgctctagggaggctgatcttggtcatgatgatctgcattcagctgcatcttcagctttgggcacca-agcagccctgtgacctcagatcttcaaggagtctaagaaaagtaatt----gatttatagtttgttcagtt--tttttcttattgtaagaacaaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197851063 305 + 198332218 gagttccaactgggttgg-ggcagtgagcagggggccctaacactagggtctcca-gaaggttttcactcgcaaaacagtctgcattcagcctccagcaattcatcaaaattaccacctacatgtccacacaggtttatgact--agccgctcctgctctagggaggctgatcttggtcatgatgctccgcattcagctgcatcttcagctttgggcacca-ggcagctctgtgacctcaggtcttcaaggagtctaagaaaagtaatt----gatttatagtttgttcag-t--tttttcttattgtaagaacaaa
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183451687 306 + 184069350 gagttccaactgcgttgg-ggccgcgagcagggg-ccctaacactagggtctcca-gaaggatttcactctcaaaacagtctgcattcagcctccagcaatccgtcagaattaccacttacatgttcatgcaggtttatcactccagctgctcctgctctagggaggctgatctccatcatgacgctctgcattcagctgcatcctcagcttccggcgcca--gcggccctgtgacctcaggtcttcgaggagtctaagaaaagtcatt----gatctatggtttgttcagtt--tttttcttattgtaagaacaaa
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188831144 306 + 189454096 gagttccaactgcgttgg-ggccgcgagcagggg-ccctaacactagggtctcca-gaaggatttcactctcaaaacagtctgcattcagcctccagcaatccgtcagaattaccacttacatgttcatgcaggtttatcactccagctgctcctgctctagggaggctgatctccatcatgacgctctgcattcagctgcatcctcagcttccggcgcca--gcggccctgggacctcaggtcttcgaggagtctaagaaaagtcatt----gatctatggtttgttcagtt--tttttcttattgtaagaacaaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178259515 306 + 178775436 GAGTTCCAACTGCGTTGG-GGCCGCGAGCAGGGG-CCCTAACACTAGGGTCTCCA-GAAGGTTTTCGCTCTCAAAACAGTCTGCATTCAGCCTCCAGCAATCCGTCAGAATTACCACTTACATGTTCATGCAGGTTTATCACTCCAGCTGCTCCTGCTCTAGGGAGGCTGATCTCCATCATGACGCTCTGCATTCAGCTGCATCCTCAGCTTCCGGCGCCA--GCGGCCCTGCGACCTCAGGTCTTCGAGGAGTCTAAGAAAAGTCATT----GATCTAtagtttgttcagtt--tttttcttattgtaagaACAAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135202268 307 + 135778131 aagttccaactgggttgg-ggcagcgagcaggggtccctaacactagggtctcca-gaaggttttcactctcaaaacagtctgcattcagcctccagcaatccgtcagaattaccacttacatgttcatgcaggtttatcactccagctgctcctgctctagggaggctgatctcgatcatgacgctctgcattcagctgcatcctcagcttcgggcgcca--gcggccctgcgaccacaggtcttcaaggagtctaagaaaagtcatt----gatctatagtttgttcagtt--tttttcttattgtaagaacaaa
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190353196 292 - 190850796 aagttccaactgggctgg-ggcagcgaacggggagccctaacactatggtctcca-ggaatttttcactctcaattc-gtctgtgttcagcctccagcaattcatcagaatcactgcttacatgttcacgcaggtttacggctccaactgctcctgctctagggagaccaatcctgattatgacgctctgcattgggc-----------------aagcga-gtcagccctgtgacctcaggtcttcgaggagcctaagaaaagcagctggcagataaatactttgttcagtt--ttat--ttcttgtaagaacaaa
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87446065 291 - 129401213 gagttc---ctgggcaggtagctgggagcacaaggcagtgtagctaaaatcaccactacaGTGGTCACTCTCACATTAGGCCACATGCTATATCTAA-AACTCATCAA----GCCACCCAGCTGTCTG-ATAAGTACATGTCCCCAGCTCCTTCAGAT-TAGAACTCATGGACTAGA----GTCCCTCCAAAct----tgtctctccaaacttcagcataatgtttgccctatg---tcaattatctgatgtgtttagggaaaataata----tattttCAGTATTTAAAACTTGTTTTTCTAATTGTAC-ATTGCA
i mm10.chr8                I 1643 C 0
e canFam3.chr16             17780389   0 -  59632846 C
e nomLeu3.chr7b            113622082  22 + 115148730 I

a score=579670.000000
s hg38.chr4_KI270925v1_alt     51081 204 +    555799 gtgtttgcctctaagctctttatatgtcaGACGGAGATT----CTAACAGGAAGTCTGTAAACGTGGCATTAGAATATTTTTACTTGGTAA---TCTCATTCAGGACAGTTCTGGAAAGGTATCATTTTCTAACTCAGGACAAAAGGCATACAGGGCCAATAGTATATTTGAAGAG----CCAGGTGTTCTAGCTTTAGGCAGCTCTACCCTGAA
s panTro4.chr4             192750556 204 + 193495092 atgtttgcctctaagctctttatatgtcaGACGGAGATT----CTAACAGGAAGTCTGTAAATGTGGCATTAGAACATTTTTACTTGGTAA---TCTCATTCAGGACAGTTCTGGAAAGGTATCATTTTCTAACTCAGGACAAAAGGCATACAGGGCCAATAGTATATTTGAAGAG----CCAGGTGTTCTAGCTTTAGGCAGCTCTACCCTGAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197851368 204 + 198332218 atgtttgcctccaagctctttatatgtcaGAGGGAGATT----CTAACGGGAAGTCTGTAAACGTGGCATTAGAACATTTTTACTTGGTAA---TCTCACTCAGGACAGTTCTGGAAAGGTATCACTCCCTAACTCAGGACAAAAGGCATACAGGGCCAATAGTATATTTGAAGAG----CCAGGTGTTCCAGCTTTAGGCAGCTCTACCCTGAA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183451993 204 + 184069350 atgtttgcctccaagctctttatatgtcaGAGGGAGACT----GTAACAGGAAGTCTGTAAACGTGGCATTAGAACATTTTCACTTGGTAA---TCTCACTCAAGACGGTTCTGGAAAGGTATCACTCTCCAACTCAGGACTAAAGGCATACAGGGCCAATAGTGTATTTCAAGAG----CCAGGTGTTCTAGCTTTAGGCAGCGCTACCCTGAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188831450 204 + 189454096 atgtttgcctccaagctctttatatgtcaGAGGGAGACT----GTAACAGGAAGTCTGTAAACGTGGCATTAGAACATTTTCACTTGGTAA---TCTCACTCAAGACGGTTCTGGAAAGGTATCACTCTCCAACTCAGGACTAAAGGCATACAGGGCCAATAGTGTATTTCAAGAG----CCAGGTGTTCtagctttaggcagcgctaccctgaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178259821 204 + 178775436 ATGTTTGCCTCCAAGCTATTTATATGTCAGAGGGAGACT----GTAACAAGAAGTCTGTAAACGTGGCATTAGAACATTTTCACTTGGTAA---TCTCACTCAAGACGGTTCTGGAAAGGTATCACTCTCCAACTCAGGACTAAAGGCATACAGGGCCAATAGTGCATTTCAAGAG----CCAGGTGTTCTAGCTTTAGGCAGCGCTACCCTGAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135202575 204 + 135778131 atgtttgcctccatgctcttgatatgtcaGAGGGAGATT----GTAACAGGAAGTCTGCAAACGTGGCCTTCGAACATTTTCACTTGGTAA---TCTCACTCAGGACAGTTCTGGAAAGGTATCACTCTCTAACTCAGGACTAAAGGCATACAGGGCCAATAGTGTATTTCAAGAG----CCAGGTGTTCTAGCTTTAGGCAGCGCTACCCTGAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190353488 191 - 190850796 atgtttgcttccaagctctttatatgtcaGAGGGAGATT----ATAACAGGAAGTCTGTAAACTTGGCATCAGAACATTTTTGCT---TAA---TGTCGCTCA----------GGAAAGGTATCACTGTCTTACTCAGGACAAAAGGCAGACAGAGCCCATAGTGTATTCCAACAG----CCAGGTGTTCTAGCTTCAGGCAGCTCTAGCCTGAG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87446356 204 - 129401213 ATGTCTTCCTCT---CTCT---TATATTAGAGGGAGACTAAAAAAAAAAGGAAATCTCAAAATTTAGCAGT-GAACACTTTCAGTAGGTCATTTTCTCATTTGAGACAGTTCCTGGAATGTACATTTCCCTTACTCAGGGCCCAAAGCATAAAGGGTTAGTAATGTATTCAAAGAA----CCAAATGGTTTACCTTCAGGCAGTCCTAGCCGTAA
i mm10.chr8                C 0 C 0
s canFam3.chr16             17780389 207 -  59632846 GTGATGACTTCCAAGCTTTTTATGTACCAGGGGAAGG-T----ATAACAGGAAGTCTCCTGATTTAGCATTAGAACAGTTTCACTTGGTAATTTCCTCACTCAGGATAGTTTCCAGAACGTGTCATTCTCTTATCCAGGACCAAAGGAATACAGAACTAATA---TATTCAAAGAGCCAACCAAGTATTTTACCTTTAGGCAGTCTTAGCTTTAT
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113622082  22 + 115148730 I

a score=826934.000000
s hg38.chr4_KI270925v1_alt     51285 322 +    555799 ATGATTGAAGACACATATTTGACCATTCTCTTAAATCTAA--G--GAATTAGATTAATTAATCAATCTTAATAACTAATTTCAG----------------TGAGTAGGAAACTGGACTACTGGCTTATTACATTTTAAATTGAATTATACTTCATATTATACTACAATATATAACACAATTTAAGAAACTCGAGGGCATAGATATCACCTCTACCATATATTTATCTA-----------------------TGtctatctatctatctatc-a-------------------------------------------tctatc---------atctatcta-----------ATCATTCTTTTGAGGGAGAGACAGAGAGACAGAAAGAAtg--tgtgtgtgtgtgtat--------gtgtatgt-------ttgca--tgtgtgtgtg
s panTro4.chr4             192750760 334 + 193495092 ATGATTGAAGACACATATTTGACCATTCTCTTAAATCTAA--G--GAATTAGATTAATTAATCAATCTTAATAACTAATTTCAG----------------TGAGTAGGAAACTGGACTACTGGCTTATTACATTTTAAATTGAATTATACTTCATATGATACTACAATATATAACACAATTTAAG--ACTCGAGGGCATAGATATCACCTCTACCATATATTTATCTGTGtctatct-------atctatctgtctatctatctatctatc-a-------------------------------------------tctatc---------atctatcta-----------ATCATTCTTTTGAGGGAGAGACAGAGAGACAGAAAGAA----tgtgtgtgtgtgtat--------gtgtatgt-------ttgca--tgtgtgtgtg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197851572 307 + 198332218 ATGATTGAAGA------------CATTCTCTTAAATCTAA--G--GAATTAGATTAATTAATTAATCTTAATAACTAATTTCAG----------------TGAGTAGGAAACTGGACTACTGGCATATTACATTTTAAATTGAATTATACTTCATATTATACTATAATATATAACACAATTTAAGAAACTCGAGGGCATAGATATCACCtctactatatatttatcta-------------------catctatctatctacctatctatcga-------------------------------------------tctatc--------tatctatct------------atcATTCTTTTGAGG--------GAGAGACAGAAACAACg--tgtgtgtgtgtatgt--------gtgtgttt-------tcgtg--tgtgtgtgtg
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113622104 356 + 115148730 ATGATTGAAGACACATATTTGACCATTCTCTTAaatctaa--g--gaattagattaattaatgaatcttaataactaattTCAG----------------TGAGTAGGAAACTGGACTACTGGCATATTACCTTTTAAATTGAATTATACTTCATATTATACTACAATATATAACACAATTTAAGAAACTCGAGGGCGTAGATATCACCtctactatatatttatctacatctatctatctatcatctatctatctatctatctatctatcta-------------------------------------------tctatc---------atctatctatcta---atctatcATTCTTTTGAGGGAGAGAAAGAGAGACAGAAAGAAtg--tgtgtgtgcgtttat--------gtgtgtgt-------ttgcatgtgtgtgtgtg
i nomLeu3.chr7b            I 22 C 0
s rheMac3.chr5             183452197 378 + 184069350 GTGATTGAAG--AGGTATGTGGCCATTCTCTTAAATCTAA--G--GAATTAGATTAATTAATCAATCTTAATAACTGCTTTCAG----------------TAAGTAGGAAACTGGACTACTGGGATATTACATTTTAAACTGAATTATACTTCATATTATACTACAATATGTAACACAATTTAAGAAACTTGAGGGCATAGATATCACCtctactatctatctatcta-----------------tctatctatctatctatctatctatctatctatctatctatc---tatctatctatctatctatctatctatctatc--------tgtctatctatcta---atctatcATTCTTTTGAGGGAGAGACAGAGAGACAGAAAGAAtg--tgtgtgtgtatgtgt--------gtgtgtgc-------atgcgtgtgtgtgtgtg
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188831654 316 + 189454096 gtgattgaagacaggtatgtggccattctcttaaatctaa--g--gaattagattaattaatcaatcttaataactgctttcag----------------tAAGTAGGAAACTGGACTACTGGGATATTACATTTTAAACTGAATTATACTTCATATTATACTACAATATGTAACACAATTTAAGAAACTTGAGGGCATAGATATCACCtctactatctatctatcta-----------------tctatctatcta---------------------------------------------------------------------------tctatctatcta---atctatcATTCTTTTGAGGGAGAGACAGAGAGACAGAAAGAAtg--tgtgtgtgtatgtgt--------gtgtgtgc-------atacgtgtgtgtgtgtg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178260025 355 + 178775436 GTGATTGAAGACAGGTATTTGGCCATTCTTTTAAATCTAA--G--GAATTAGATTAATTAATCAATCTTAATAACTGCTTTCAG----------------TAAGTAGGAAACTGGACTACTGGGATATTACATTTTAAACTGAATTATACTTCATATTATACTACAATATATAACACAATTTAAGAAACTTGAGGGCATAGATATTACctctactatctatctatcta-----------------tctatctatctgtctatctatctatctatctatct------------------------------------tctatc--------tatctgtctatcta---atctatcattcttttgagggagagacagagagacagaaagaatg--tgtgtgtatgtgtgtgtgcatacgtgtgtgt-------gtgtgtgtgtgtgtgtg
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135202779 323 + 135778131 GTGATTGAAGACAGGTATTTGGCTATTCTCTTAAATCTAA--G--GAATTAGACTAATTAATCAATCTTAATAACTAATTTCAG----------------TGAGTAGGAAATTGGACTACTGGGATATTATGTTTTAAACTAAATTATACTTCATATTATACTGCAATATATAACACAATCTAAGAAACTT-AGGGCGTAGATGTCACCtctactatctatctatcta-----------------tctatctatcta-----------------------------------------------------------tctatc--------tatctatctatcta---atctatcATTCTTTTGAGGGAGAGACAGAGAGACAGAAAGAAtg--tgtgtgtgtgtatgt--------gtgtgtgc-------atacgtgtgtgtgtgtg
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190353679 395 - 190850796 ATGATTGAAAACAGATATTTGACCATTCTCTTAAATCTAA--AATGAATTAGATTAATTAAGCAATCCTAATAACTAATTTCAG----------------TGAGTAGGAAACTGAACTACTGGCATATTACACATGAAATTGCATCATACTTCATATTGTATTACAATATACTACACATTTTAGGAAACGTGAGGGCATAGATATCACCTCTACTATATATTTACCtc----tatctatctattatctatctatctatctatctatctatctatctatctatcaatcaatcatctatctatgtatctatctatgtatctttctaggtatgtatctatgtatctatgtatctgtcATTCTTCT----------------GACAGAATGTATGCACGTTtgtgtgtgtgt--------gcatgtgt-------atgcgtgtgtgtatatg
i calJac3.chr3             C 0 I 640
s mm10.chr8                 87446560 336 - 129401213 ATTATTAAGGCCAGATATTTAACCATTCTCTTAAATCTAAAGG--GAATTAGAC-AATTAATCAGTCTTAATAACCAACTCCAGCTTTTAGTAACAGCTACTAGTAGAAGTCTAGGCAAATGACATACTACATTTTAAACTGAGTTTTACTACACATTATACAACA-----TGATAAATTTTAAGAAATGTGACAGCATAGATTTtgtatata-tatgtatatatata-----------------tatatatatacatatatacatatatatg-------------------------------------------tatgta--------tatgtatatatata----------------------cacacacatatatGTTAGATGAATA--TGTGTTATTATACTT--------ATACATGTTATAAAAATGtat-tgcccatg--
i mm10.chr8                C 0 C 0
s canFam3.chr16             17780596 229 -  59632846 ACTATTGAAGACATATATTTAACCATTCTCTTAAATCTAAAGG--GAATTA----AATTAACCAATCTTAATAATCAATTTCAGCAATTAGTAATAGCCATTAAGAGAAATCTGGACTACTGGCCTAACAAAGTCTAAGCTCAATTATACTGCACATTATAC-----CATGCAATGTATTTTAAGAAACTTGATGGTTTAGATA----------------------TA-----------------T----------------------------------------------------------------------TATGGC---------ATCTATATA------------------------------------------------ATA--TGTGTGTGCATGTTG----------------------------------------
i canFam3.chr16            C 0 C 0

a score=370005.000000
s hg38.chr4_KI270925v1_alt     51607 130 +    555799 t----------TCCCTGCTTTAGCAAT-tccatatccattctccaccc----------tcctccatccctcaggaaactgatcaatagagagtaaattgaaatgctcccttgccttctggcttttggttagattcaccaaaggacaagaac
s panTro4.chr4             192751094 130 + 193495092 t----------TCCCTGCTTTAGCAAT-tccatatccattctccaccc----------tcctccatccatcaggaaactgatcaatagagagtaaattgaaatgctcccttgccttctggcttttggttggattcaccaaaggacaaggac
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197851879 130 + 198332218 t----------TCCCTGCTTTAGCAAT-tccatatccattctccaccc----------tcctccatccctcaggaaactgatcaatagagagtaaattgaaatgctcccttgccttctggcttttggttggattcaccaaaggacaagaac
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113622460 129 + 115148730 t----------TCCCTGCTTTGGCAAT-tccatatccgttctccaccc----------tcctccatccctcaggaaactgatc-atagagaataaattgaaatgctcccttgccttctggcttttggttagattcaccaaaggacaagaac
i nomLeu3.chr7b            C 0 I 2
s rheMac3.chr5             183452575 136 + 184069350 t----gtATTTTCTCTGCTTTAGCAAT-tccatatccgttctccaccc----------tcctccatctctcaggaaactgatcaatagagactaaattgaaatgatctcttgccttctggcttttggttggattcaccaaaggacaagaac
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188831970 136 + 189454096 t----gtattttctctgctttagcaat-tccatatccgttctccaccc----------tcctccatctctcaggaaactgatcaatagagactaaattgaaatgatctcttgccttctggcttttggttggattcaccaaaggacaagaac
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178260380 136 + 178775436 t----gtattttccctGCTTTAGCAAT-TCCATATCCGTTCTCCACCC----------TCCTCCATCCCTCAGGAAACTGATCAATAGAGACTAAATTGAAATGCTCTCTTGCCTTCTGGCTTTTGGTTGGATTCACCAAAGGACAGGAAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135203102 140 + 135778131 tgtgcgtattttccctgctttagcaat-tccatatccgttctccaccc----------tcctccatccctcaggaaactgatcaatagagactaaattgaaatgatctcttgccttctggcttttggttggattcaccaaaggacaagaac
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87446896 129 - 129401213 -----------ttgcagttttaggtgtcttcctaaactttgtctcgtc----------tcctctgtgccctagaaaacagatcaataaaaagtaaattaaaattctcctctgttttctagcttctggttggattca-aatagaacaaaaat
i mm10.chr8                C 0 C 0
s canFam3.chr16             17780825 128 -  59632846 -----------TCCC--CATTAGTGAT-ttcagatccattctctactagtctctattgtcctctatgtct-gggaaacagatccatgcagact-agtcaaattttttctttgccttctaga-------tagatttataaagggacaggagc
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190354074 640 - 190850796 I

a score=4319.000000
s hg38.chr4_KI270925v1_alt     51737 2 +    555799 ac
s panTro4.chr4             192751224 2 + 193495092 ac
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197852009 2 + 198332218 ac
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183452711 2 + 184069350 ac
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188832106 2 + 189454096 ac
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178260516 2 + 178775436 AC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135203242 2 + 135778131 ac
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87447025 2 - 129401213 gc
i mm10.chr8                C 0 C 0
s canFam3.chr16             17780953 2 -  59632846 tc
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190354074 640 - 190850796 I
e nomLeu3.chr7b            113622589 2 + 115148730 I

a score=136947.000000
s hg38.chr4_KI270925v1_alt     51739 52 +    555799 agatagagagaaaagtctgaggttgtagccttaattccctgagcttatttcc--
s panTro4.chr4             192751226 52 + 193495092 agatagagagaaaagtctgaggttgtagccttaattccctgagcttatttcc--
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197852011 52 + 198332218 agatggagagaaaagtctgaggttgtagccttaattccctgagcttatttcc--
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113622591 52 + 115148730 agatggagagaaaagtctgaggttgtaggcttaattccctgagcttatttcc--
i nomLeu3.chr7b            I 2 C 0
s rheMac3.chr5             183452713 52 + 184069350 aaatggagagaaaagtctgaggttgttgccttaattctctgagcttatttcc--
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188832108 52 + 189454096 aaatggagagaaaagtctgaggttgttgccttaattctctgagcttatttcc--
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178260518 52 + 178775436 AAATGGAGAGAAAAGTCTGAGGTTGTTGCCTTAATTCTCTGAGCTTATTTCC--
i papAnu2.chr5             C 0 T 57
s chlSab2.chr7             135203244 52 + 135778131 aaatggagagaaaagtctgaagttgttgccttaattccctgagcttatttcc--
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87447027 52 - 129401213 aaatggaagagaatgaataaagcagagactttaaatccctcagctcttcccc--
i mm10.chr8                C 0 C 0
s canFam3.chr16             17780955 47 -  59632846 agatggagtgaaggaagttagtttcaggcatcatttcccca-------tcccGC
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190354074 640 - 190850796 I

a score=22382.000000
s hg38.chr4_KI270925v1_alt     51791 14 +    555799 tgTGTGCTCCCCTG
s panTro4.chr4             192751278 14 + 193495092 tgTGTGCTCCCCTG
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113622643 14 + 115148730 tgTGTGCTCCCCTG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183452765 14 + 184069350 tgTGTGTTCCCCTG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188832160 14 + 189454096 tgTGTGTTCCCCTG
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135203296 14 + 135778131 tgTGTGTTCCCCTG
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87447079 14 - 129401213 CATGTGTTCATTGT
i mm10.chr8                C 0 C 0
s canFam3.chr16             17781002 14 -  59632846 TGTATTCACTTCTG
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190354074 640 - 190850796 I
e papAnu2.chr5             178260570 57 + 178775436 T
e ponAbe2.chr4             197852063  0 + 198332218 C

a score=23302.000000
s hg38.chr4_KI270925v1_alt     51805 16 +    555799 GGATTAGGTACACCCT
s panTro4.chr4             192751292 16 + 193495092 GGATTAGGTACACCCT
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113622657 16 + 115148730 GGATTAGGTGCATGCT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183452779 16 + 184069350 GGATTAGGTACACCCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188832174 16 + 189454096 GGATTAGGTACACCCT
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135203310 16 + 135778131 GGATTAGGTACACTCT
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87447093 16 - 129401213 AGATTGTATTCATCCT
i mm10.chr8                C 0 I 7
e canFam3.chr16             17781016  0 -  59632846 C
e calJac3.chr3             190354074 640 - 190850796 I
e papAnu2.chr5             178260570 57 + 178775436 T
e ponAbe2.chr4             197852063  0 + 198332218 C

a score=3000.000000
s hg38.chr4_KI270925v1_alt     51821 2 +    555799 CC
s panTro4.chr4             192751308 2 + 193495092 CC
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113622673 2 + 115148730 CC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183452795 2 + 184069350 CC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188832190 2 + 189454096 CC
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135203326 2 + 135778131 CC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87447109 7 - 129401213 I
e canFam3.chr16             17781016 0 -  59632846 C
e calJac3.chr3             190354074 640 - 190850796 I
e papAnu2.chr5             178260570 57 + 178775436 T
e ponAbe2.chr4             197852063 0 + 198332218 C

a score=5922.000000
s hg38.chr4_KI270925v1_alt     51823 3 +    555799 AAC
s panTro4.chr4             192751310 3 + 193495092 AAC
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113622675 3 + 115148730 AAC
i nomLeu3.chr7b            C 0 T 89
s rheMac3.chr5             183452797 3 + 184069350 AAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188832192 3 + 189454096 AAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178260513 3 + 178775436 AAC
i papAnu2.chr5             T 57 C 0
s chlSab2.chr7             135203328 3 + 135778131 AAC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87447109 7 - 129401213 I
e canFam3.chr16             17781016 0 -  59632846 C
e calJac3.chr3             190354074 640 - 190850796 I
e ponAbe2.chr4             197852063 0 + 198332218 C

a score=98982.000000
s hg38.chr4_KI270925v1_alt     51826 54 +    555799 ACAAATGGAGAGAAAAGTCTGAGGTTGTAGCCTTAATTCCCTGAGCTTATTTCC
s panTro4.chr4             192751313 54 + 193495092 ACAAATGGAGAGAAAAGTCTGAGGTTGTAGGCTTAATTCCCTGAGCTTATTTCT
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113622589 54 + 115148730 acagatggagagaaaagtctgaggttgtaggcttaattccctgagcttatttcc
i nomLeu3.chr7b            T 89 C 0
s rheMac3.chr5             183452800 54 + 184069350 ACAAATGGAGAGAAAAGTCTGAAGTTGTAGCCTTAATTCCCTGAGCTTATTTCC
i rheMac3.chr5             C 0 T 89
s macFas5.chr5             188832195 54 + 189454096 ACAAATGGAGAGAAAAGTCTGAAGTTGTCGCCTTAATTCCCTGAGCTTATTTCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178260516 54 + 178775436 ACAAATGGAGAGAAAAGTCTGAGGTTGTTGCCTTAATTCTCTGAGCTTATTTCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135203331 54 + 135778131 ACAAATGGAGAGAAAAGTCTGAAGTTGTAGCCTTAATTCCCTGAGCTTATTTCC
i chlSab2.chr7             C 0 T 89
e mm10.chr8                 87447109  7 - 129401213 I
e canFam3.chr16             17781016  0 -  59632846 C
e calJac3.chr3             190354074 640 - 190850796 I
e ponAbe2.chr4             197852063  0 + 198332218 C

a score=67664.000000
s hg38.chr4_KI270925v1_alt     51880 36 +    555799 TGTGTGCTCCCCTGGGATTAGGTACACCCTCCAACA
s panTro4.chr4             192751367 36 + 193495092 TGTGTGTTCCCCTGGGATTAGGTACACCCTCCAACA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113622643 36 + 115148730 tgTGTGCTCCCCTGGGATTAGGTGCATGCTCCAACA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183452765 36 + 184069350 tgTGTGTTCCCCTGGGATTAGGTACACCCTCCAACA
i rheMac3.chr5             T 89 C 0
s macFas5.chr5             188832249 36 + 189454096 TGTGTGTTCCCCTGGGATTAGGTACACCCTCCAACA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178260570 36 + 178775436 TGTGTGTTCCCCTGGGATTAGGTACACCCTCCAACA
i papAnu2.chr5             C 0 T 89
s chlSab2.chr7             135203296 36 + 135778131 tgTGTGTTCCCCTGGGATTAGGTACACTCTCCAACA
i chlSab2.chr7             T 89 C 0
e mm10.chr8                 87447109  7 - 129401213 I
e canFam3.chr16             17781016  0 -  59632846 C
e calJac3.chr3             190354074 640 - 190850796 I
e ponAbe2.chr4             197852063  0 + 198332218 C

a score=35721.000000
s hg38.chr4_KI270925v1_alt     51916 18 +    555799 CAAATGGAGAGAAAAGTC
s panTro4.chr4             192751403 18 + 193495092 CAAATGGAGAGAAAAGTC
i panTro4.chr4             C 0 T 89
s nomLeu3.chr7b            113622679 18 + 115148730 CAAATGGAGAGAAAAGTC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183452801 18 + 184069350 CAAATGGAGAGAAAAGTC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188832285 18 + 189454096 CAAATGGAGAGAAAAGTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178260517 18 + 178775436 CAAATGGAGAGAAAAGTC
i papAnu2.chr5             T 89 C 0
s chlSab2.chr7             135203332 18 + 135778131 CAAATGGAGAGAAAAGTC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87447109  7 - 129401213 I
e canFam3.chr16             17781016  0 -  59632846 C
e calJac3.chr3             190354074 640 - 190850796 I
e ponAbe2.chr4             197852063  0 + 198332218 C

a score=19101.000000
s hg38.chr4_KI270925v1_alt     51934 12 +    555799 TGAGGTTGTAGC
s panTro4.chr4             192751332 12 + 193495092 TGAGGTTGTAGG
i panTro4.chr4             T 89 C 0
s nomLeu3.chr7b            113622697 12 + 115148730 TGAGGTTGCAGC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183452819 12 + 184069350 TGAAGTTGTAGC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188832303 12 + 189454096 TGAAGTTGTAGC
i macFas5.chr5             C 0 T 89
s papAnu2.chr5             178260535 12 + 178775436 TGAGGTTGTTGC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135203350 12 + 135778131 TGAAGTTGTAGC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87447109  7 - 129401213 I
e canFam3.chr16             17781016  0 -  59632846 C
e calJac3.chr3             190354074 640 - 190850796 I
e ponAbe2.chr4             197852063  0 + 198332218 C

a score=112881.000000
s hg38.chr4_KI270925v1_alt     51946 59 +    555799 CTTAATTCCCTGAGTTTATTTCCTGTGTGTTCCCCAGGGATTAGGTACACCCTCCAACA
s panTro4.chr4             192751344 59 + 193495092 CTTAATTCCCTGAGCTTATTTCTTGTGTGTTCCCCTGGGATTAGGTACACCCTCCAACA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113622709 59 + 115148730 CTTAATTCCCTGAGCTTATTTCCTGTGTGCTCCCCTGGGATTAGGTACACCTTCCAACA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183452831 59 + 184069350 CTTAATTCCCTGAGCTTATTTCCTGTGTGTTCCCCTGGGATTAGGTACACCCTCCAACA
i rheMac3.chr5             C 0 T 89
s macFas5.chr5             188832226 59 + 189454096 CTTAATTCCCTGAGCTTATTTCCTGTGTGTTCCCCTGGGATTAGGTACACCCTCCAACA
i macFas5.chr5             T 89 C 0
s papAnu2.chr5             178260547 59 + 178775436 CTTAATTCTCTGAGCTTATTTCCTGTGTGTTCCCCTGGGATTAGGTACACCCTCCAACA
i papAnu2.chr5             C 0 T 89
s chlSab2.chr7             135203362 59 + 135778131 CTTAATTCCCTGAGCTTATTTCCTGTGTGTTCCCCTGGGATTAGGTACACCCTCCAACA
i chlSab2.chr7             C 0 T 89
e mm10.chr8                 87447109  7 - 129401213 I
e canFam3.chr16             17781016  0 -  59632846 C
e calJac3.chr3             190354074 640 - 190850796 I
e ponAbe2.chr4             197852063  0 + 198332218 C

a score=161547.000000
s hg38.chr4_KI270925v1_alt     52005 86 +    555799 CAAATGGAGAGAAAAGTCTGAGATTGCAGCCTTAATTCCCCGAGTTTATTTCCTGTGTGTTCCCCTGGGATTAGGTACACCCTCCA
s panTro4.chr4             192751403 86 + 193495092 CAAATGGAGAGAAAAGTCTGAGGTTGTAGGCTTAATTCCCTGAGCTTATTTCTTGTGTGTTCCCCTGGGATTAGGTACACCCTCCA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113622768 86 + 115148730 CAAATGGAGAGAAAAGTCTGAGGTTGTAGCCTTAATTCCCTGAGCTTATTTCCTGTGTGCTCCCCTGGGATTAGGTACACCTTCCA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183452801 86 + 184069350 CAAATGGAGAGAAAAGTCTGAAGTTGTAGCCTTAATTCCCTGAGCTTATTTCCTGTGTGTTCCCCTGGGATTAGGTACACCCTCCA
i rheMac3.chr5             T 89 C 0
s macFas5.chr5             188832285 86 + 189454096 CAAATGGAGAGAAAAGTCTGAAGTTGTAGCCTTAATTCCCTGAGCTTATTTCCTGTGTGTTCCCCTGGGATTAGGTACACCCTCCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178260517 86 + 178775436 CAAATGGAGAGAAAAGTCTGAGGTTGTTGCCTTAATTCTCTGAGCTTATTTCCTGTGTGTTCCCCTGGGATTAGGTACACCCTCCA
i papAnu2.chr5             T 89 C 0
s chlSab2.chr7             135203332 86 + 135778131 CAAATGGAGAGAAAAGTCTGAAGTTGTAGCCTTAATTCCCTGAGCTTATTTCCTGTGTGTTCCCCTGGGATTAGGTACACCCTCCA
i chlSab2.chr7             T 89 C 0
e mm10.chr8                 87447109  7 - 129401213 I
e canFam3.chr16             17781016  0 -  59632846 C
e calJac3.chr3             190354074 640 - 190850796 I
e ponAbe2.chr4             197852063  0 + 198332218 C

a score=7896.000000
s hg38.chr4_KI270925v1_alt     52091 3 +    555799 ACA
s panTro4.chr4             192751489 3 + 193495092 ACA
i panTro4.chr4             C 0 T 71
s nomLeu3.chr7b            113622854 3 + 115148730 ACA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183452887 3 + 184069350 ACA
i rheMac3.chr5             C 0 T 36
s macFas5.chr5             188832371 3 + 189454096 ACA
i macFas5.chr5             C 0 T 178
s papAnu2.chr5             178260603 3 + 178775436 ACA
i papAnu2.chr5             C 0 T 36
s chlSab2.chr7             135203418 3 + 135778131 ACA
i chlSab2.chr7             C 0 T 36
s calJac3.chr3             190354714 3 - 190850796 aca
i calJac3.chr3             I 640 C 0
e mm10.chr8                 87447109 7 - 129401213 I
e canFam3.chr16             17781016 0 -  59632846 C
e ponAbe2.chr4             197852063 0 + 198332218 C

a score=8889.000000
s hg38.chr4_KI270925v1_alt     52094 18 +    555799 CAAATGGAGAGAAAAGTG
s nomLeu3.chr7b            113622857 18 + 115148730 CAAATGGAGAGAAAAGTC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188832196 18 + 189454096 CAAATGGAGAGAAAAGTC
i macFas5.chr5             T 178 C 0
s calJac3.chr3             190354717 18 - 190850796 caaatggagagaaaagac
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87447109  7 - 129401213 I
e canFam3.chr16             17781016  0 -  59632846 C
e chlSab2.chr7             135203421 36 + 135778131 T
e papAnu2.chr5             178260606 36 + 178775436 T
e rheMac3.chr5             183452890 36 + 184069350 T
e ponAbe2.chr4             197852063  0 + 198332218 C
e panTro4.chr4             192751492 71 + 193495092 T

a score=6890.000000
s hg38.chr4_KI270925v1_alt     52112 12 +    555799 TGAGGTTGTAGG
s panTro4.chr4             192751421 12 + 193495092 TGAGGTTGTAGG
i panTro4.chr4             T 71 C 0
s nomLeu3.chr7b            113622875 12 + 115148730 TGAGGTTGTAGC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188832214 12 + 189454096 TGAAGTTGTCGC
i macFas5.chr5             C 0 I 89
s calJac3.chr3             190354735 12 - 190850796 tgaggctgcacc
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87447109  7 - 129401213 I
e canFam3.chr16             17781016  0 -  59632846 C
e chlSab2.chr7             135203421 36 + 135778131 T
e papAnu2.chr5             178260606 36 + 178775436 T
e rheMac3.chr5             183452890 36 + 184069350 T
e ponAbe2.chr4             197852063  0 + 198332218 C

a score=19081.000000
s hg38.chr4_KI270925v1_alt     52124 23 +    555799 CTTAATTCCCTGAGCTTATTTCT
s panTro4.chr4             192751433 23 + 193495092 CTTAATTCCCTGAGCTTATTTCT
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113622887 23 + 115148730 CTTAATTCCCTGAGCTTATTTCC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188832315 23 + 189454096 CTTAATTCCCTGAGCTTATTTCC
i macFas5.chr5             I 89 C 0
s calJac3.chr3             190354747 22 - 190850796 -cttattccctgagcttatttcc
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87447109  7 - 129401213 I
e canFam3.chr16             17781016  0 -  59632846 C
e chlSab2.chr7             135203421 36 + 135778131 T
e papAnu2.chr5             178260606 36 + 178775436 T
e rheMac3.chr5             183452890 36 + 184069350 T
e ponAbe2.chr4             197852063  0 + 198332218 C

a score=119568.000000
s hg38.chr4_KI270925v1_alt     52147 37 +    555799 TGTGTGTTCCCCTGGGATTGGGTACACCCTCCAACAA
s panTro4.chr4             192751456 37 + 193495092 TGTGTGTTCCCCTGGGATTAGGTACACCCTCCAACAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197852063 37 + 198332218 tgtgtgttcccctgggattaggtacaccctccaacaa
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113622910 37 + 115148730 TGTGTGCTCCCCTGGGATTAGGTATACCTTCCAACAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183452854 37 + 184069350 TGTGTGTTCCCCTGGGATTAGGTACACCCTCCAACAA
i rheMac3.chr5             T 36 C 0
s macFas5.chr5             188832338 37 + 189454096 TGTGTGTTCCCCTGGGATTAGGTACACCCTCCAACAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178260570 37 + 178775436 TGTGTGTTCCCCTGGGATTAGGTACACCCTCCAACAA
i papAnu2.chr5             T 36 C 0
s chlSab2.chr7             135203385 37 + 135778131 TGTGTGTTCCCCTGGGATTAGGTACACCCTCCAACAA
i chlSab2.chr7             T 36 C 0
s calJac3.chr3             190354769 37 - 190850796 tgtgtgttcccccgggattaggtacagcctccagcaa
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87447109  7 - 129401213 I
e canFam3.chr16             17781016  0 -  59632846 C

a score=24620.000000
s hg38.chr4_KI270925v1_alt     52184 7 +    555799 AGTGCAT
s panTro4.chr4             192751493 7 + 193495092 AGTGCAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197852100 7 + 198332218 agtgcat
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113622947 7 + 115148730 AGTGCAT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183452891 7 + 184069350 AGTGCAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188832375 7 + 189454096 AGTGCAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178260607 7 + 178775436 AGTGCAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135203422 7 + 135778131 AGTGCAT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190354806 7 - 190850796 agtacac
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17781016 7 -  59632846 AGTTTAT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87447109 7 - 129401213 I

a score=1798574.000000
s hg38.chr4_KI270925v1_alt     52191 543 +    555799  
s panTro4.chr4             192751500 542 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197852107 543 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113622954 528 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183452898 542 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188832382 542 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178260614 542 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135203429 541 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190354813 535 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87447116 515 - 129401213  
i mm10.chr8                I 7 C 0
s canFam3.chr16             17781023 538 -  59632846  
i canFam3.chr16            C 0 I 128

a score=217380.000000
s hg38.chr4_KI270925v1_alt     52734 71 +    555799 AAGACAGACTATTGAATTAACAATGACTATTAAATAAACCACATACATTTTCCCTCCTAGGAGATGTTGAA
s panTro4.chr4             192752042 71 + 193495092 AAGACAGACTATTGAATTAACAATGACTATTAAATAAACCACATACATTTTCCCTCCTAGGAGATGTTGAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197852650 71 + 198332218 AAGACAGACCATTGAATTAACGATGACTATTAAATAAACCACATACATTTTCCCTTCTAGGAGATGTTGAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113623482 71 + 115148730 AAGACAGACTATTGAATTAACAATTACTATTAAATAAACCACATACATTTTCCCTTCTAGGAGATGTTGAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183453440 71 + 184069350 AAGACAGACTATTGAATTAACAATGACTATTAAATAAACCACATACATTTTCCCTCCTAGGAGATGTCAAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188832924 71 + 189454096 AAGACAGACTATTGAATTAACAATGACTATTAAATAAACCACATACATTTTCCCTCCTAGGAGATGTCGAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178261156 70 + 178775436 AAGACAGACTATTGAATTAACAATGACTATTAAATAAACCAC-TACATTTTCCCTCCTAGGAGATGTCGAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135203970 71 + 135778131 AAGACAGACTATTGAATTAACAATGACTATTAAATAAACCACATACATTTTCCCTCCTAGGAGATGTCGAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190355348 71 - 190850796 AAGACAAAGCACTGAATTAACAGTGACTGTTAAATAAACCACATACGTTTTCCCTCCTGTGCGATGTTAGA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87447631 57 - 129401213 CAAACTAACTACTGAGCTACC-CTAATTGTAACACAAACCACAATTATTTCTCCACCT-------------
i mm10.chr8                C 0 C 0
e canFam3.chr16             17781561 128 -  59632846 I

a score=97501.000000
s hg38.chr4_KI270925v1_alt     52805 31 +    555799 CACAATATGGAACTTA------CCTCTTTCTGTACTT
s panTro4.chr4             192752113 31 + 193495092 CACAATATGGAACTTA------CCTCTTTCTGTACTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197852721 31 + 198332218 TACAATATGGAACTTA------CCCCTTTCTGTACTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113623553 31 + 115148730 CACAGTATGGAACTTA------CCTCTTTCTGTACTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183453511 31 + 184069350 CACAGTATGGAACTTA------TCTCTTTCTGTACTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188832995 31 + 189454096 CACAGTATGGAACTTA------TCTCTTTCTGTACTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178261226 37 + 178775436 CACAATATGGaacttatctctttctctttctgtactT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135204041 31 + 135778131 CACAATATGGAACTTA------TCTCTTTCTGTACTT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190355419 31 - 190850796 CATAGTAGGGCACTGA------CCTCTTTCTGGGCTT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87447688 25 - 129401213 ---AATATACAACAAT------TTTCTTTCT---TTT
i mm10.chr8                C 0 C 0
s canFam3.chr16             17781689 31 -  59632846 cccagcatggagcctg------cttctccctctacct
i canFam3.chr16            I 128 I 181

a score=18069.000000
s hg38.chr4_KI270925v1_alt     52836 10 +    555799 TATACT--------------------------------------------------TGAG
s panTro4.chr4             192752144 10 + 193495092 TATACT--------------------------------------------------TGAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197852752 10 + 198332218 TATACT--------------------------------------------------CGAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113623584 10 + 115148730 TATACT--------------------------------------------------CGAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183453542 10 + 184069350 TATACT--------------------------------------------------CGAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188833026 10 + 189454096 TATACT--------------------------------------------------CGAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178261263 10 + 178775436 TATACT--------------------------------------------------CGAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135204072 60 + 135778131 TATACTTGAGCTAGGCAGTGTATATATCCCCCGAGCTAGGCTGTGTATATATCCTCCAAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190355450 10 - 190850796 TATACT--------------------------------------------------TGAG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87447713 10 - 129401213 TATGAT--------------------------------------------------TGAG
i mm10.chr8                C 0 I 16
e canFam3.chr16             17781720 181 -  59632846 I

a score=76167.000000
s hg38.chr4_KI270925v1_alt     52846 37 +    555799 CTAGGCTGTGTATATATCCCTTGAGCTAGGCTGTGTA
s panTro4.chr4             192752154 37 + 193495092 CTAGGCTGTGTATATATCCCTTGAGCTAGGCTGTGTA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197852762 14 + 198332218 CTAGGCTGTGTA-----------------------TA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113623594 37 + 115148730 CTAGGCTGTGTATATATCCCTTGACCTAGGCTGTGTA
i nomLeu3.chr7b            C 0 T 43
s rheMac3.chr5             183453552 37 + 184069350 CTAAGCTGTGTATATATCCCCTGAGCTAGGCTGTGTA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188833036 37 + 189454096 CTAAGCTGTGTATATATCCCCTGAGCTAGGCTGTGTA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178261273 37 + 178775436 CTAAGCTGTGTATATATCCCCTGAGCTAGGCTGTGTA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135204132 37 + 135778131 CTAGGCTGTGTATATATCCCCCGAGCTAGGCTGTGTA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190355460 21 - 190850796 CTAGGCTGTGTATATGTCCCT----------------
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87447723 16 - 129401213 I
e canFam3.chr16             17781720 181 -  59632846 I

a score=12318.000000
s hg38.chr4_KI270925v1_alt     52883 7 +    555799 TATATCC
s panTro4.chr4             192752191 7 + 193495092 TATATCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197852776 7 + 198332218 TATATCC
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183453589 7 + 184069350 TGTATCC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188833073 7 + 189454096 TGTATCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178261310 7 + 178775436 TATATCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135204169 7 + 135778131 TGTATCC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87447723 16 - 129401213 I
e canFam3.chr16             17781720 181 -  59632846 I
e calJac3.chr3             190355481 0 - 190850796 C
e nomLeu3.chr7b            113623631 43 + 115148730 T

a score=45823.000000
s hg38.chr4_KI270925v1_alt     52890 18 +    555799 CTTGAGCTAGGCTGTGTA
s panTro4.chr4             192752198 18 + 193495092 CTTGAGCTAGGCTGTGTA
i panTro4.chr4             C 0 T 50
s ponAbe2.chr4             197852783 18 + 198332218 CTTGAGCTAGGCTGTGTA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113623588 18 + 115148730 CTCGAGCTAGGCTGTGTA
i nomLeu3.chr7b            T 43 C 0
s rheMac3.chr5             183453596 18 + 184069350 CTTGAGCTAGGCTGTGTA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188833080 18 + 189454096 CTTGAGCTAGGCTGTGTA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178261317 18 + 178775436 CTTGAGCTAGGCTGTGTA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135204176 18 + 135778131 CCCGAGCTAGGCTGTGTA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87447723 16 - 129401213 I
e canFam3.chr16             17781720 181 -  59632846 I
e calJac3.chr3             190355481  0 - 190850796 C

a score=56251.000000
s hg38.chr4_KI270925v1_alt     52908 25 +    555799 TATATCCCTTGAGCTAGGCTGTGTA
s panTro4.chr4             192752166 25 + 193495092 TATATCCCTTGAGCTAGGCTGTGTA
i panTro4.chr4             T 50 C 0
s ponAbe2.chr4             197852801 25 + 198332218 TATATCCCTTGAGCTAGGCTGTGTA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113623606 25 + 115148730 TATATCCCTTGACCTAGGCTGTGTA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183453614 25 + 184069350 TATATCCCCCAAGCTAGGCTGCGTA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188833098 25 + 189454096 TATATCCCCCAAGCTAGGCTGCGTA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178261335 25 + 178775436 TATATCCCCCAAGCTAGGCTGTGTA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135204194 25 + 135778131 TATATACCCTGAGCTAGGCTGTGTA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87447723 16 - 129401213 I
e canFam3.chr16             17781720 181 -  59632846 I
e calJac3.chr3             190355481  0 - 190850796 C

a score=13755.000000
s hg38.chr4_KI270925v1_alt     52933 7 +    555799 TATATCC
s panTro4.chr4             192752191 7 + 193495092 TATATCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197852826 7 + 198332218 TATATCC
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183453639 7 + 184069350 TATATCC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188833123 7 + 189454096 TATATCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178261360 7 + 178775436 TATATCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135204219 7 + 135778131 TATATCC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87447723 16 - 129401213 I
e canFam3.chr16             17781720 181 -  59632846 I
e calJac3.chr3             190355481 0 - 190850796 C
e nomLeu3.chr7b            113623631 0 + 115148730 C

a score=32922.000000
s hg38.chr4_KI270925v1_alt     52940 16 +    555799 CTTGAGCTAGGCTGTG
s panTro4.chr4             192752198 16 + 193495092 CTTGAGCTAGGCTGTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197852833 16 + 198332218 CTTGAGCTAGGCTGTG
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183453646 16 + 184069350 CCCAAGCTAGGCTGTG
i rheMac3.chr5             C 0 I 195
s macFas5.chr5             188833130 16 + 189454096 CCTGAGCTAGGCTGTG
i macFas5.chr5             C 0 I 170
s papAnu2.chr5             178261367 16 + 178775436 CCTGAGCTAGGCTGTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135204226 16 + 135778131 CCCAAGCTAGGCTGTG
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17781901 16 -  59632846 CTTGAGCTAAACTACC
i canFam3.chr16            I 181 C 0
e mm10.chr8                 87447723 16 - 129401213 I
e calJac3.chr3             190355481  0 - 190850796 C
e nomLeu3.chr7b            113623631  0 + 115148730 C

a score=4242.000000
s hg38.chr4_KI270925v1_alt     52956 2 +    555799 TA
s panTro4.chr4             192752214 2 + 193495092 TA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197852849 2 + 198332218 TA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183453857 2 + 184069350 TA
i rheMac3.chr5             I 195 C 0
s macFas5.chr5             188833316 2 + 189454096 TA
i macFas5.chr5             I 170 C 0
s papAnu2.chr5             178261383 2 + 178775436 TA
i papAnu2.chr5             C 0 I 145
s chlSab2.chr7             135204242 2 + 135778131 TA
i chlSab2.chr7             C 0 I 20
s canFam3.chr16             17781917 2 -  59632846 TG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87447723 16 - 129401213 I
e calJac3.chr3             190355481 0 - 190850796 C
e nomLeu3.chr7b            113623631 0 + 115148730 C

a score=-3030.000000
s hg38.chr4_KI270925v1_alt     52958 1 +    555799 -C
s panTro4.chr4             192752216 1 + 193495092 -C
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197852851 1 + 198332218 -C
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113623631 1 + 115148730 -C
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183453859 1 + 184069350 -T
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188833318 1 + 189454096 -T
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178261530 1 + 178775436 -T
i papAnu2.chr5             I 145 C 0
s chlSab2.chr7             135204264 1 + 135778131 -T
i chlSab2.chr7             I 20 C 0
s canFam3.chr16             17781919 1 -  59632846 G-
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87447723 16 - 129401213 I
e calJac3.chr3             190355481 0 - 190850796 C

a score=1020727.000000
s hg38.chr4_KI270925v1_alt     52959 318 +    555799 ATATCCCTGAACTTGCCCAAATTCATGACTTTGTTTTCTCACTTTCCA----TTAGGATTTTCTTAGCTTCAGTTATATCTGTTGAAATTCTGTACTTTATTCAAGGGTTATCATGGATAGCAACTTCCCTATGAAACATATTCTGATGTTTTCAATCAGATATTTATAGTCTTTCCCTGTTTTGCACAACCATTGTATATTATTTATTTCTGCTTTATTGTCTTCACATTATGTATAC--------ACACATATGTAATATGC---ACACACACATATATAGagtaaattttcattatttgc------tgtag----gttcattc--tctgaagctgctgctaa
s panTro4.chr4             192752217 318 + 193495092 ATATCCCTGAACTTGCCCAAATTCATGACTTTGTTTTCTCACTTTCCA----TTAGGATTTTCTTAGCTTCAGTTATATCTGTTGAAATTCTGTACTTTATTCAAGGATTATCATGGATAGCAACTTCCCTATGAAACATATTCTGATGTTTTCAATCAGATATTTATAGTCTTTCCCTCTTTTGCACAACCATTGTATATTATTTATTTCTGCTTTATTGTCTTCACATTATGTATAC--------ACACATATGTAATATGC---ACGCACACATATATAGagtaaattttcattatttgc------tgtag----gttcattc--tctgaagctgctgctaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197852852 318 + 198332218 ATATCCCTGAACTTACCCAAATTCATGGCTTTGTTTTCTCACTTTCCG----TTAGGATTTTCTTAACTTCAGTTATATCTGTTGAAATTCTATACTTTATTCAAGGATTATCATGGATAGCAACTTCTCTATGAAACATATTCTGATGTTTTCAATCAGATATTTATAGTCTTTCCCTCTTTTGCACAATCATTGTATATTATTTATTTCTGCCTTATTGTCTTCACATTATGTATAC--------TTACATATGTAATAGGC---ACACACACATATATAGagtcaattttcattatttgc------tgtag----gttcgttc--tctgaagctgctgctaa
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113623632 317 + 115148730 ATATCCCTGAACTTACCCAAATTCATGACTTTGTTTACTCACTTTCCG----TTAGGATTTCCTTAGCTTCAGTTGTATCTGTTGAAATTCTATACTTTTTTCAAAGATTATCATGGAT-GCAACTTCTCTATGAAACATATTCTGATGTTTTCAGTCAGATATTTATAGTCTTTCCCTCTTTTGCACAATCATTGTATATTATTTATTTCTGCTTTATTGTCTTCACATTATGTatac--------atacatacgtaatatgc---acacacacatatataGagtcaattttcattatttgc------tgtag----gttcattc--tctgaagctgctgctaa
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183453860 324 + 184069350 ATATCCCTGAACTTGCCCAAATTGATGACTTTGTTTTCTCACTTTCTG----TTAGGATTCTCTAAGCTTCAGTTATACCTGTTGAAATTCTATACTTTATTCAAGGACTATAATGGAGAGCAACTTCTCTATGAAACATATTCTGATGTTTTCAATCAGATATTTATAGTCTTTCCCTCTTTTGCACAATCATCATATATTATTTATTTCTGCTTTATTGTCTTtacattatatatat--acacacatatatatataatacgc---acgcacacatatataGagtcaattttcattatttgc------tgtag----gttcattc--tctgaagctgctgctaa
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188833319 324 + 189454096 ATATCCCTGAACTTGCCCAAATTGATGACTTTGTTTTCTCACTTTCTG----TTAGGATTCTCTAAGCTTCAGTTATACCTGTTGAAATTCTATACTTTATTCAAGGACTATAATGGAGAGCAACTTCTCTATGAAACATATTCTGATGTTTTCAATCAGATATTTATAGTCTTTCCCTCTTTTGCACAATCATCatatattatttatttctgctttattgtctttacattatatatat--acacacatatatatataataCGC---ACGCACACATATATAGagtcaattttcattatttgc------tgtag----gttcattc--tctgaagctgctgctaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178261531 326 + 178775436 ATATCCCTGAACTTGCCCAAATTGATGACTTTGTTTTCTCACTTTCTG----TTAGgattctctaagcttcagttatACCTGTTGAAATTCTATACTTTATTCAAGGATTATAATGGAGAGCAACTTCTCTATGAAACATATTCTGATGTTTTCAATCAGATATTTATAGTCTTTCCCTCTTTTGCACAATCAtcgtatattatttatttctgctttattgtctttacattatatatatacacacacatatatatataatatgc---acgcacacatatatagagTCAATTTTCATTATTTGC------TGTAG----GTTCATTC--TCTGAAGCTGCTGCTAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135204265 322 + 135778131 ATATCCCTGAACTTGCCCAAATTCATGACTTAGTTTTCTCACTTTCTG----TTAGGATCTTCTAAGCTTCAGTTATACCTGTTGAAATTCTATACTTTATTCAAGGATTATAATGGAGAGCAACTTCCCTATGAAACATATTCTGATGTTTTCAGTCAGATATTTATAGTCTTTCCCTCTTTTGCACAATCattgtatattatttatttctgctttattgtctttacattatatatac----------atatatataatatgc---acacacacatatatagagtcaatattcattatattcctatttcataG----GTTCGTTC--TCTGAAGCTGCTATTAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190355481 284 - 190850796 --------GAACGTTCCCAAATGCACCA-TTTGTTTCCTCACTTTCTG----TTAGGGATGTCTTGGCTTCTGTTGTACCTTTTGAAATTCTACGCTTTATTCAAAGATTATCATGGATAGCAACTTCTCTATGAGACATATTCTGATGTTTTCACTCAGCTCTTCAT--TCTTTCCCTCTTTTGCACAATCATTGTATGTTAT-----------TTATTGTCTTTACATTATATATGT--------------ATATAATA---------CACACACATGTATagtcaattttcatgactggc------tgcag----gttccttc--tctgaagttgctgctaa
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87447739 314 - 129401213 GTATCCCCAAGCTTCTCCACAAATATGACTATGTTATCTAATCTTCTGAATAACAGGATCCCTCTATGCCCA-TTCTTCTGGCTGAGGTTCAACATGTTATTTAAGGATTATCATGGACAGAAACTTCTCTATGAAGCACATGTT--TTTCTTTAATCTGGTAT------TATCTCTGTCTTTTGAAAGATTATTGTATATCTTTTA-TACTACCTTGATGTCTTTTCATAATATACAC--------ACACACACATAAAGAGAGAGACAAATAGACACAAAGAGTAAA--TTCATTACCTGA------T-CGA----GTTTGTTCATTATAAAGTTGATGATAA
i mm10.chr8                I 16 I 57
s canFam3.chr16             17781920 280 -  59632846 AAGTTCCTGGACACTCTCAAACC--TGACTTTGTTTTCTTACCTTCTA----TTAGAATTCTCTTAGATCCAGCTCTACCTGTACAAATTCTATACTTT----AAGGATTATCATGAATAGCAACTCCCCTATGAAATATATTCTGATATCTTATAAAAGATACTA----TCTCTCCCTCCTTTGAACAATT-TTTCATATTATTTATTTCT--CTCATTGCCTTTTTGTAAGATACCT----------------------------ACAc------------agttgattctcattatttgc------tttagctatatttgttc--tactaagtcactgcgaa
i canFam3.chr16            C 0 C 0

a score=2811121.000000
s hg38.chr4_KI270925v1_alt     53277  987 +    555799  
s panTro4.chr4             192752535  999 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197853170  999 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113623949  982 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183454184  989 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188833643  977 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178261857 1003 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135204587  997 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190355765  879 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17782200  898 -  59632846  
i canFam3.chr16            C 0 I 210
e mm10.chr8                 87448053   57 - 129401213 I

a score=2066684.000000
s hg38.chr4_KI270925v1_alt     54264 655 +    555799  
s panTro4.chr4             192753534 655 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197854169 655 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113624931 656 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183455173 663 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188834620 663 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178262860 662 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135205584 667 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190356644 652 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17783308 632 -  59632846  
i canFam3.chr16            I 210 C 0
e mm10.chr8                 87448053  57 - 129401213 I

a score=1564013.000000
s hg38.chr4_KI270925v1_alt     54919 506 +    555799  
s panTro4.chr4             192754189 486 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197854824 487 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113625587 486 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183455836 504 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188835283 504 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178263522 504 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135206251 504 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190357296 493 - 190850796  
i calJac3.chr3             C 0 I 381
s mm10.chr8                 87448110 492 - 129401213  
i mm10.chr8                I 57 C 0
s canFam3.chr16             17783940 501 -  59632846  
i canFam3.chr16            C 0 C 0

a score=1325451.000000
s hg38.chr4_KI270925v1_alt     55425 424 +    555799  
s panTro4.chr4             192754675 423 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197855311 424 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113626073 420 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183456340 478 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188835787 427 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178264026 425 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135206755 409 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190358170 435 - 190850796  
i calJac3.chr3             I 381 C 0
s mm10.chr8                 87448602 442 - 129401213  
i mm10.chr8                C 0 I 197
s canFam3.chr16             17784441 434 -  59632846  
i canFam3.chr16            C 0 C 0

a score=7857145.000000
s hg38.chr4_KI270925v1_alt     55849 2681 +    555799  
s panTro4.chr4             192755098 2683 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197855735 2695 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113626493 2670 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183456818 2692 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188836214 2694 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178264451 2660 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135207164 2686 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190358605 2676 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17784875 2789 -  59632846  
i canFam3.chr16            C 0 I 1212
e mm10.chr8                 87449044  197 - 129401213 I

a score=33585.000000
s hg38.chr4_KI270925v1_alt     58530 10 +    555799 AACTGGAGGG
s panTro4.chr4             192757781 10 + 193495092 AACTGGAGGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197858430 10 + 198332218 AACTGGAGGA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113629163 10 + 115148730 AACTGGAGGA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183459510 10 + 184069350 AACTGGAGGA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188838908 10 + 189454096 AACTGGAGGA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178267111 10 + 178775436 aactggagga
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135209850 10 + 135778131 AACTGGAGGA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190361281 10 - 190850796 AGCCGGAGGG
i calJac3.chr3             C 0 I 28
s canFam3.chr16             17788876 10 -  59632846 ATCTAGGGAA
i canFam3.chr16            I 1212 C 0
e mm10.chr8                 87449044 197 - 129401213 I

a score=609010.000000
s hg38.chr4_KI270925v1_alt     58540 270 +    555799 AGAAGAAAGAATGAGGAAAATGATAAATTGTGTT-----------------------------GGAAATCATCTAATGATGAGCCTGTTCTGGGAAATCCTTAACCACAGGAATGAGCTTCACCTGGTGTTGAGCATTCAACTCCTTCTGGTTGAATG-CCAGAGAAGGTGTGAGCTGCAATGACTCTA---ACAAGACTGGGGAATCGGGGCAG-CCTCTGCGCTTGGACCCGAGGCCAGCCCAAGACAGTGACACCCGCTACTCG-CCCCGCTTT--CTTCCTAGCACCCTCATTACAAGAACAG
s panTro4.chr4             192757791 270 + 193495092 ACAAGAAAGAATGAGGAAAATGATAAATTGTGTT-----------------------------GGAAATCATCTAATGATGAGCCTGTTCTGGGAAATCCTTAACCACAGGAATGAGCTTCACCTGGTGTTGAGCATTCAAATCCTTCTGGTTGAACG-CCAGAGAAGGTGTGAGCTGCAATGACTCTA---ACAAGACGGGGGAATCTGGGCAG-CCTCTGCGCTTGGACCCGAGGCCAGCCCAAGACGGTGACACCTGCTACTCG-CCCCGCTTT--CTTCCTAGCACCCTCATTACAAGAACAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197858440 299 + 198332218 ACAAGAAAGAATGAGGAAAATGATAAATTGTGTTGGAAATCATCTAATGATGAGCCTGCTCCGGGAAATCATCTAATGATGAGCCTGTTCTGGGAAATCCTTAACCACAGGAATGATCTTCACATGGTGTTGAGCATTTAAATCCTTCTGGTTGAACG-CCAGAGAAGGTGTGAGCTGCAATGACTCTA---ACAAGACTGGGGAATCTGGGCAG-CCTCTGCGCTTGAACCCAAGGCCAGCCCAAGAGAGTGACACCCTCTACTCG-CCCCGCTTT--CTTACTAGCACCCTCATCACAACGACAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113629173 266 + 115148730 ACAAGAAAGAATGAGGAAAATGATAAATTGTGTT-----------------------------GGAAATCATCTAATGATGAGCCTGCTCCGGGAAATCCTTAACCACAGGAATGATCTTCACATGGTGTTGAGTATTTAAATCCTGC---TTGAACG-CCAGAGAAGGTGTGAGCTGCAATGACTCTA---ACAAGAGT-GGGAATCTGGGCAG-CCTCTGCGCTTGGACCCAAGGCCAGCCCAAGACGGTGACACCCTCTACTCG-CCCCACTTT--CTTACTAGCACCCTCGTCACAAGAACAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183459520 265 + 184069350 GCAAG-AAGAATGAGGAAAACGATAAATTGTGTT-----------------------------GGAAATCATCTAACGATGAGCCCGTTTCAGGAAATCCTTCACCACAGGGAGGATCTTGACAGGGTGTGGCGTATGGAAATCCTTCTGGGTGAACG-CCAGAGAAGGTGGAAGCCGCCGTGACTCTC---ACAAGAGAGGGGAATCCAGGCAGCCCTCTGCGCTTGGACCCAAGGCCAGCCCGAGACAGTGACACCCTCCA------TCTGCTTT--CTTACTAGCACTCTCGTCACAAGAGCAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188838918 264 + 189454096 GCAAG-AAGAATGAGGAAAACGATAAACTGTGTT-----------------------------GGAAATCATCTAACGATGAGCCCGTTTCAGGAAATCCTTCACCACAGGGAGGATCTTGACAGGGTGTGGCGTATGGAAATCCTTCTGGGTGAACG-CCAGAGAAGGTGGAAGCCGCCGTGATTCTC---ACAAGAGAGGGGAATCCAGGCAG-CCTCTGCGCTTGGACCCAAGGCCAGCCCGAGACAGTGACACCCTCCA------TCTGCTTT--CTTACTAGCACTCTCGTCACAAGAGCAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178267121 265 + 178775436 gcaagaaagaatgaggaaaacgATAAATTGTGTT-----------------------------GGAAATCATCTAACGATGAGCCCATTTCAGGAAATCCTTCACCACAGGGAGGATCTTTACAGGGTGTGGCATATGGAAATCCTTCTGGGTGAACG-CCAGAGAAGGTGGAAGCCACCGTGACTCTC---ACAAGAGAGGGGAATCCAGGCAG-CCTCTGCGCTTGGACCCAAGGCCAGCCCGAGACAGTGACACCCTCCA------TCTGCTTT--CTCACTAGCACTCTCGTCACAAGAGCAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135209860 265 + 135778131 GCAAGAAAGAATGAGGAAAATGATAAATTGTGTT-----------------------------GGAAATCATCTAACAATGAGCCCGTTTCAGGAAATCCTTCACCACAGGGAGGATCTTTACAGGGTGTGGCGTATGGAAGTCCTTCTGGGTGAATG-CCAGAGAAGGTGGAAGCCACCATGACTCTC---ACAAGAGAGGGGAATCCAGGCAG-CCTCTGCGCTTGGACCCAAGGCCAGGCCGAGACAGTGACACCCTCCG------TCTGCTTT--CTTACTAGCACTCTCGTCACAAGAGCAG
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17788886 276 -  59632846 AAGAGAAAGAATGAGATAGATTATGAATTATGTC-----------------------------TGAAATCTTCTAATGATTACCCTATTCCTGGAACTTTTTAACAACAGGAATAATCTTTAAAGTGTGTTGTGTGTTCAAATCCCTCCAATTGAATTCCCAGAGAAGGTGTAAGCTGAACTGAGTCTAGTGACAGTAGGAGGCAGTCT-GGTAA-CCTCTCAACCTGCATCCAGAGCCAGCACAAGGAAGTGTCACCATCCAATTGACCCTTCTTTCCCCCACTGCATTCCTCATCACAATAGGAG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87449044 197 - 129401213 I
e calJac3.chr3             190361291  28 - 190850796 I

a score=1332518.000000
s hg38.chr4_KI270925v1_alt     58810 490 +    555799 CAGCCTTTACAGTTAAGCA-AAGTGCAAACTCCTCTGACCTTT-GGTTCTTCTGCAATAAAGTCAGCTGGCTGCTTT--TAATGTTTCCTTTCATGGCTTTCAGAAAACCCTCCTCCCATGTGAAATGTGAAA-TTTTGAAAGGGTCCAAGCCGT-ATCTCACATGGAAAGGGACGCTAGACAGGAATAATTTACATCTTAAAGTTATGAACACA-AAATTAATTAGAAAATTGAACCA-GGGTGAGCGGTAGTGAAAAAACAGCTGTTCCTGTTTTAGCCTCGGTTTCATTTCTCCCACAGATTCTAAATCTCAGGGAGCTTGTGAACTCAATTCCCTTTAATTGTCTCTATGCAAGCACAGTCATGCTAGTTCAAAGCTCATAAACA-TC-GAGGTCTAACGTTACTTGTTTGAATGATGCATTCATTCTGGGACTAAGTG-TGAGAATGCCA---ATA-AGCCCT-CTGCATAACTCAAAAGAGTGTA---GGCATTGTGAGAAAA
s panTro4.chr4             192758061 490 + 193495092 CAGCCTTTACAGTTAAGCA-AAGTGCAAACTCCTCTGACCTTT-GGTTCTTCTGCAATAAAGTCAGCTGGCTGCTTT--TAATGTTTCCTTTTATGGCTTTCAGAAAACCCTCCTCCCATGTGAAATGTGAAA-TTTTGAAAGGGTCCAAGCCGT-ATCTCACATGGAAAGGGACACTAGATAGGAATAATTTACATCTTAAAGTTATGAACACA-AAATTAATTAGAAAATTGAACCA-GGGTGAGCGGTAGTGAAAAAACAGCTGTTCCTGTTTCAGCCTCGGTTTCATTTCTCCCACAGATTCTAAATCTCAGGGAGCTTGTGAACTCAATTCCCTTTAATTGTCTCTATGCAAGCACAGTCATGCTAGTTCAAAGCTCATAAACG-TC-GAGGTCTAACGTTACTTGTTTGAATGATGCATTCATTCTGGGACTAAGTG-TGAGAATGCCA---ATA-AGCCCT-TTGCATAACTCAAAAGAGTGTA---GGCATTGTGAGAAAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197858739 490 + 198332218 CAGCCTTTACAGTTATGCA-AAGTGCAAACTCCTCTGACCTTT-GGTTCTTCTGCAATAAGGTCAGCTGGCTGTTTT--TAATGTTTCCTTTTATGGCTTTCAGAAAACCTTCCTCCCATGTGAAATGTGAAA-TTTTGAAAGGGTCCAAGCCAT-ATCTCACATGGAAAGGGACACTAGATAGGAATAATTTACATCTTAAAGTTATGAACACA-AAATTAATTAGAAAATTGAACCA-GGGTGATAGGTAGTAAAAAAACAGCTGTTCCTGTTTTAGCCTCGGTTTCATTTCTCCCACAGATTCTAAATCTCAGGGAGCTTGTGAACTCAATTCCCTTTAATTGTCTCTATGCGAGCACAGTCATGCTAGTTCAAAGCTCATAAACA-TC-GAGGTCTAACGTTACTTGTTTGAATGATGCATTCATTCTGGGACTAAGTG-TGAGAATGCCA---ATA-AGCCCT-TTGCATAACTCAAAAGAGTGTA---GGCATTGTGAGAAAA
i ponAbe2.chr4             C 0 I 3896
s nomLeu3.chr7b            113629439 488 + 115148730 CAGCCTTTACAGTTAAGCA-AAGTGCAAACTCCTCTGACCTTT-GGTTCTTCTGCAATAAAGTCAGCTGGCTGTTTT--TAATGTTTCCTTT-ATGGCTTTCAGAAAACTCTCCTCCCATGTGGAATGTGAAA-TTTTGAAAGGGTCTAAGTCGT-ATGTCACATGGAAAGGGACACTAAATAGGAATAATTTACATCTTAAAGTTATGAATACA-AAATTAATTAGAAAATTGAACCA-GGGTGATAGGTAGTGAGAAAACAGCTGTTCCTGTTTTAGCCTCAGTTTCATTTCTCCCACAGATTCTAAATCTCAGGGAGCTTGTGAACTCAATTCCCTTTAATCGTCTCTATGCGAGCACAGTCATGCTAGTTCAAAGCTCATAAACA-TC-GAGGTCTAACGTTACTTGTTCAAATGATGCATTCGTTCTGGGACTCAGTG-TGAGAATGCCA---ATA-AGCCCT-TTGCATAACT-AAAAGAGTGTA---GGCATTGTGACAAAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183459785 489 + 184069350 CAGCCTTTACAGTCAAGCA-AAGTGCAAACTCCTCTGACCTTC-GGGTCTTCTGCAATAAGGTCAGTTGGCTGTTTT--TAATGTTTCATTTTACGGCTTTCAGAAAACCC-CCTCCCATGTGAAATGTGAAA-TTTTGAAAGGGTCCAAGCCGT-ATCTCACATGGCAAGGGACACCAGATAGGCATAATTTACATCTTAAAGTTATGAATACA-AAATTAATTAGAAGATTGTACCA-GGGTGACAGGTAGTGAGAAAACAGCTGTTCCTGATTTAGCCTCAGTTTCG-TTCTCCCACAGAGCCTAAATCTCAGGGAGCTAGTGAACTCAATTCCCCTAAATCGTCTCTATGCGAGTGCAGTCATGCTAGTTCAACGCTCATAAACA-TC-GAGGTCTAGCACCACTTGTTCGAACGATGCATTCGTTCTGGGTCTCAACG-TGAGAATGTCA---ATA---CCCT-TTGCATAACTCGAAAGAGTGTATGTAGCACTGTGAGAAAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188839182 490 + 189454096 CAGCCTTTACAGTCAAGCA-AAGTGCAAACTCCTCTGACCTTC-GGGTCTTCTGCAATAACGTCAGTTGGCTGTTTT--TAATGTTTCATTTTACGGCTTTCAGGAAACGC-CCTCCCATGTGAAATGTGAAA-TTTTGAAAGGGTCCAAGCCAT-ATCTCACATGGCAAGGGACACCAGATAGGCATAATTTACATCTTAAAGTTATGAATACA-AAATTAATTAGAAGATTGTACCA-GGGTGACAGGTAGTGAGAAAACAGCTGTTCCTGATTTAGCCTCGGTTTCG-TTCTCCCACAGAGCCTAAATCTCAGGGAGCTAGTGAACTCAATTCCCCTAAATCGTCTCTATGCGAGTGCAGTCATGCTAGTTCAACGCTCACAAACA-TC-GAGGTCTAGCACCACTTGTTCGAACGATGCATTCGTTCTGGGTCTCAACG-TGAGAATGTCA---ATA--GCCCT-TTGCATAACTCGAAAGAGTGTATGTAGCACTGTGAGAAAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178267386 491 + 178775436 CAGCCTTTACAGTCAAGCA-AAGTGCAAACTCCTCTGACCTTC-GGGTCTTCTTCAATAAGGTCAGCTGGctgtttt--taatgtttcattttacgGCTTTCAGAAAACCC-CCTCCCATGTGAAATGTGAAA-TTTTGAAAGGGTCCAAGCCGT-ATCTCACATGGAAAGGGACACCAGATAGGCATAGTTTACATCTTAAAGttatgaataca-aaattaattagaAGATTGTACCA-GGGTGACAGGTAGTGAGAAAACAGCTGTTTCTGATTTAGCCTCGGTTTCGTTTCTCCCACAGAGCCTAAATCTCAGGGAGCTAGTGAACTCAATTCCCCTAAATCGTCTCTATGCGAGTACAGTCATGCTAGTTCAAAGCTCATAAACA-TC-GAGGTCTAGCACCACTTGTTCGAACGATGCATTCGTTCTGGGTCTCAACG-TGAGAATGTCG---ATA--GCCCT-TTGCATAACTCGAAAGAGTGTATGTAGCACTCTGAGAAAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135210125 492 + 135778131 CAGCCTTTACAGTTAAGCA-AAGTGCAAACTCCTCTGACCTTC-GGGTCTTCTGCAATAAGGTCAGTTGGCTGTTTT--TAATATTTCATTTTACGGCTTTCAGAAAACCC-CCTCCCATGTGAAATGTGAAA-TTTTGAAAGGGTCCAAGCCGT-ATCTCACATGGAAAGGGACACCAGATAGCCATAATTTACATCTTAAAGTTATGAATACA-AAATTAATTAGAAGATTGTACCA-GGGTGACAGGTAGTGAGAAAACAGCTGTTCCTGATTTAACCTCGGTTTCATTTCTCCCACAGAGCCTAAATCTCAGGGAGCTAGTGAACTCAATTCCCCTAAATCGTCTCTATGCGAGTGCAGTCATGCTAGTTCAACGCTCATAAACA-TC-GAGGTCTAGCATCACTTGTTCGAACAATACATTCGTTCTGGGTCTCAATG-GGAGAATGTCA---ATA-AGCCCT-TTGCATAACTCTAAAGAGTGTATGTAGCACTGTGAGAAAA
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87449241 474 - 129401213 cagcaatttcagttagatataacTATAAATGCTCTGAACTTTT-GAGACTTCTTCAATTATATCAGTAGGCTAGTTTTGTATTGTGCCATTTTATAGCTTTCAGAAAGATCAACTCACCTGTGAAGTGTGGAGTTTTTGAAAGGGTCAAAACAGTAATGTCACATGGGAAGGGAAATTCGATGTGAATAATTTACATTTGA---TTATATATACACAAAATAATTAGAA-ATTTCATTG-TGGTAATAGCTAGTGAGTATACTTTCATTGCTA----------GCTTTCATTTCTTCCACTG-------TTCTTAGGATGCTTATATATATAGTCACTTTCAATCACCTGTGCATGAATACTGCCCTGCTAGCTCAGAGATAACCAGTATTC-ATAGTCTA-TGTCACTTGTTCAAGGTCTTCATTTTTTCCCTGAATTCATGCTAAAAATTTAA---ATGCATTCCA-CGTCATAATCCTAAA---TCTA---GGCACTTGCAGTAAA
i mm10.chr8                I 197 C 0
s canFam3.chr16             17789162 465 -  59632846 CTGCCTTGGTATTTAGCCA-AAGGGCACACACCTCTGACATTTGGGGTCTTCTGCAATTAAATCAACTGGCTACTTT--TA----TTCATTGTACAGCTTTTAGAAAAGCAAGCATACCTATGACA--TAGAA-TTTT--AAGAGTCAAAACAGT-AAATCATATGGAAAGGGACACTAGGCATAAATAATTTACATCTTGATGTCATATATACA-AGAACAATTAGAAAATCTTACTAGGGGCAATAGCAAGTGAGAATGGGGTTGTTCTTATTTTAGT-----TTTCACTTCAC-------------ATCTTGAGGTGCTGGTGAACACAATTCTTTTTAATCATTTCT-----AGCACAGGCATGCTAGTTCAAAGCTAATCAACC-CCTGTAGTCTAGTATCACTTGTTCAAGTGATGCATTT-TTCTTGAGCCCATTA-TGGGAATGAGAATTATA-AGCTTTCTTGCATAATTCAACAGAGTCTA---GACACTATGAGAAAA
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190361291  28 - 190850796 I

a score=201775.000000
s hg38.chr4_KI270925v1_alt     59300 74 +    555799 TGAATC-GAATAAATGGAAACACTGGATCTCCAAATTCATTTCCAAAATTAAAAACCAGCTACCTACCATTGGTA
s panTro4.chr4             192758551 74 + 193495092 TGAATC-GAATAAATGGAAACACTGGATCTCCAAATTCATTTCCAAAATTAAAAACCAGCTACCTACCATTGGTA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197863125 74 + 198332218 TGAATT-GAATAAATGGAAACACTGAATCTCCAAATTCATTTCCAAAATTAAAAACCAGCTACCTACCACTGATA
i ponAbe2.chr4             I 3896 C 0
s nomLeu3.chr7b            113629927 74 + 115148730 TGAATC-AAATAAATGGAAACACTGAATCTCCTAATTCATTTCCAGAATTAAAAACCAGCTACCTACCATTGATA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183460274 75 + 184069350 TGAATCGGAATAAATGGAAACACCGAATCTCCAAATTCATTTCCAAAATTAAAAACCAGCTCCCCACAATTGATA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188839672 75 + 189454096 TGAATCGGAATAAATGGAAACACCGAATCTCCAAATTCATTTCCAAAATTAAAAACCAGCTCCCCACAATTGATA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178267877 75 + 178775436 TGAATCAGAATAAATGGAAATACCGAATCTCCAAAttcatttccaaaattaaaaaccaGCTACCCACAATTGATA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135210617 75 + 135778131 TGAATCAGAATAAATGGAAACACCGAATCTCCAAATTCATTTCCAAAATTAAAAACCAGCTACCCACAATTGATA
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87449715 55 - 129401213 -----------CAACAAAAATGATCAACCCTCTGATTGATCTTCACATTTAAAAACCCACAATATA---------
i mm10.chr8                C 0 C 0
s canFam3.chr16             17789627 75 -  59632846 TGAATCAAAACACATAGGAATGCTGAATCTTAAAATTCATCTCCAAAATTAAAAACAATCTACTCACGATTCATA
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190361291 28 - 190850796 I

a score=3066309.000000
s hg38.chr4_KI270925v1_alt     59374 869 +    555799  
s panTro4.chr4             192758625 869 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197863199 869 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113630001 869 + 115148730  
i nomLeu3.chr7b            C 0 M 100
s rheMac3.chr5             183460349 859 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188839747 858 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178267952 859 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135210692 860 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190361319 897 - 190850796  
i calJac3.chr3             I 28 C 0
s mm10.chr8                 87449770 883 - 129401213  
i mm10.chr8                C 0 C 0
s canFam3.chr16             17789702 897 -  59632846  
i canFam3.chr16            C 0 C 0

a score=688644.000000
s hg38.chr4_KI270925v1_alt     60243 239 +    555799 ATAGTTGAATTATCATTAATAGTGTGAGTCTGCTAATTTGCTTGTGATGGTTAAGAATTCCCTGTT-GAAGAAGA-TAGCCAAAGATTC------------------------TTCGCGGGGGCTGTATC--------ACCTGGAGCTTTTCCCTCTGGTGTGTTTCTGATCCATCTTTGACCCAGGGTATCTGAGGCCCGTCTG--GTGCGCTGAAGGCTTTTTGGTGAGCTCTAGATGGATTTTAAGA-TTTTTACATAAAT-CTCAG----------------------------------------GATGGCT
s panTro4.chr4             192759494 239 + 193495092 ATAGTTGAATTATCATTAATAGTGTGAGTCTGCTAATTTGCTTGTGATGGTTAAGAATTCCCTGTT-GAAGAAGA-TAGTCAAAGATTC------------------------TTTACGGGGGCTGTATC--------ACCTGGAGCTTTTCCCTCTGGGGTGTTTCTGATCCATCTTTGACCCAGGGTATCTGAGGCCCATCTG--GTGCGCTGAAGGCTTTTTGGTGAGCTCTAGATGGATTTTAAGA-TTTTTACATAAAT-CTCAG----------------------------------------GATGGCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197864068 239 + 198332218 ATAGTTGAATTATCATTAATAGTGTGAGTCTGCTAATTTGCTTGTGATGGTTAAGAATTCCCTATT-GAAGAAGA-TAGTCAAAGATTC------------------------TTCACAGGGGCTGTATC--------ACCTGGAGATTTTCACTCTGGGGTGTTTCTGATCCATCTTTGACCCAGGGTATCTGAGGCCTGTCTG--GTGCCCTGAAGGCTTTTTGGTGAGCTCCAGATGGATTTTAAGA-TTTTTACATAAAT-CTCAG----------------------------------------GATGGCT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183461208 278 + 184069350 ATAGTTGAATTATCATTAATAGTGTGAGTCTGCTGATTTGTTTGTGACGGTGAAGAATTCCCTATT-GAAGAAGATTAGTCAAAGATTC------------------------TTCATGGGGGCTGTATC--------CGCTGGAGCTTTTCCCTCTGGGGTGTTTCTGGTCCATCTTTGACCCAGGGTATCTGAGGCCTGTCTG--GTGCCCTGAAGGCTTTTTGGTGAGCTCTAGATGGATTTTAAGA-TTTTTACATATAT-CTCAGGG--TTCTTTATTTCCTCTGCATGAATATCCCGAAGAACAGATGGCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188840605 277 + 189454096 ATAGTTGAATTATCATTAATAGTGTGAGTCTGCTGATTTGTTTGTGACGGTGAAGAATTCCCTATT-GAAGAAGA-TAGTCAAAGATTC------------------------TTCATGGGGGCTGTATC--------CGCTGGAGCTTTTCCCTCTGGGGTGTTTCTGGTCCATCTTTGACCCAGGGTATCTGAGGCCTGTCCG--GTGCCCTGAAGGCTTTTTGGTGAGCTCTAGATGGATTTTAAGA-TTTTTACATATAT-CTCAGGG--TTCTTTATTTCCTCTGCATGAATATCCCGAAGAACAGATGGCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178268811 277 + 178775436 ATAGTTGAATTATCATTAATAGTGTGAGTCTGCTAATTTGTTTGCGACGGTGAAGAATTCCCTATT-GAAGAAGA-TAGTCAAAGATTC------------------------TTCATGGGGGCTGTATC--------CGCTGGAGCTTTTCCCTCTGGGGTGTTTCTGGTCCATCTTTGACCCAGGGTATCTGAGGCCTGTCTG--GTGCCCTGAAGGCTTTTTGGTGAGCTCTAGAtggattttaaga-tttttacatAAAT-CTCAGGG--TTCTTTATTTCCTCTGCATGAATATCCCGAAGAACAGATGGCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135211552 277 + 135778131 ATAGCTGAATTATCATTAATAGTGTGAGTCTGCTAATTTATTTGTGACGGTGAAGAATTCCCTATT-GAAGAAGA-TAGTCAAAGATTC------------------------TTCATGGGGGCTGTATC--------CGCTGGAGCTTTTCCCTCTGGGGTGTTTCTGGTCCATCTTTGACCCAGCGTATCTGAGGCCTGTCTA--GTGCCCTGAAGGCTTTTTGGTGAGCTCTAGATGGATTTTAAGA-TTTTTACATAAAT-CTCAGGG--TTCTTTATTTCCTCTACATGAATATCCCAAAGAACAGATGGCT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190362216 280 - 190850796 ATAGTTGAATTATCATTAATACCGTGAGTCTGCTAATTTGCTTATGAGGGCTGGGAATTCCCTATT-GAAGGAAC-TACCCAAAGATCC------------------------TTTATGGGAGCTGTATG--------AGCTGGAGCTTTTCCCTCTGGGGTGTTTCTGGTCTGTCTTTGACCCAGGGTACCTGAGGCCTGTCTGATGTGCCCTGAAGGCTTTTTGGTGAGCTCTAGATGGATATTAAGGTTTTTTATGCAAAT-CTCAGGG--TTCTTCATTTTCTCTGCCTAAATAGTCCAAAGAACAGATGGCT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87450653 304 - 129401213 CTAGTTATATTATCATTAACAATGTGATTCTGCCAGTTAACTTATGGTGGTCAAGAGTTACCTGTTAGACAAAGA-AAGTACAGGCTTTAACACTTAGGATCAGAGCTGGTGATTCAGGAAAGAAGTACCTAAATAAACACTGGAGGACTTCCTTTTGGC-CATCCCTCCCCTATCATT--TCATGAGAGCCTGGTGTCTGTTCCATGTACATTCAGGAACTTTGGCTGAGATC----TGAATTTTA----TATTAAAAAAAATGCTTAGGAGTTTTTT-ATTACTGCCACATAAATATTCCAAAGAACAGATGGCT
i mm10.chr8                C 0 C 0
s canFam3.chr16             17790599 302 -  59632846 CTGGCTGGATTATCATTAATAGTGTGATTATACCAGTTAATTTATGATGATTAAGAATTCCCTATT-GAACAAAA-TTGTCAAAGATTAGATACATAAGAACACAGTCAGGTATTAAGGGGAGATGTACT--------GTCTGGAACACTTCCTTTTGGGGTGTTTCTGGTCTGCCTTCCTCCTGGGGTACCTGATATCTGTCTGATATACTCTGA-GGCTTATGGATGTGCTCTGGATGGATTCTAAAC-TTTCTACATAAAT-CTCAGAG--TTCTTCATTTCCTCCACATAAATATTCCCAAGAATAGATGGCT
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113630870 100 + 115148730 M

a score=131745.000000
s hg38.chr4_KI270925v1_alt     60482 33 +    555799 GGGAAGTTATCACAACACAAAGTAAGACGGAAA
s panTro4.chr4             192759733 33 + 193495092 GGGAAGTTATCACAACACAAAGTAAGACGGAAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197864307 33 + 198332218 GGGAAGTTATCACAACACAAAGTAAGACGGAAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113630970 33 + 115148730 GGGAAGTTACCACAACACAAAGTAAGATGGAAA
i nomLeu3.chr7b            M 100 C 0
s rheMac3.chr5             183461486 33 + 184069350 GGGAAGTTATTGCAACACAAAGTAAGATAGAAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188840882 33 + 189454096 GGGAAGTTATTGCAACACAAAGTAAGATAGAAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178269088 33 + 178775436 GGGAAGTTATTGCAACACAAAGTAAGATAGAAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135211829 33 + 135778131 GGGAAGTTGTTGCAACACAAAGTAAGATAGAAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190362496 33 - 190850796 GGGAAGTTATTGCAACACGAGGTGAGATAGAAA
i calJac3.chr3             C 0 I 329
s mm10.chr8                 87450957 33 - 129401213 GGGAAATTATCACATCACAAAGAAAGCTGGAAA
i mm10.chr8                C 0 C 0
s canFam3.chr16             17790901 33 -  59632846 TGAAAATTATTTCATCACAAAATAAGATGGACA
i canFam3.chr16            C 0 C 0

a score=2247156.000000
s hg38.chr4_KI270925v1_alt     60515 637 +    555799  
s panTro4.chr4             192759766 637 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197864340 641 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113631003 638 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183461519 643 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188840915 643 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178269121 643 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135211862 643 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190362858 634 - 190850796  
i calJac3.chr3             I 329 C 0
s mm10.chr8                 87450990 558 - 129401213  
i mm10.chr8                C 0 C 0
s canFam3.chr16             17790934 630 -  59632846  
i canFam3.chr16            C 0 I 197

a score=4183486.000000
s hg38.chr4_KI270925v1_alt     61152 1193 +    555799  
s panTro4.chr4             192760403 1195 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197864981 1192 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113631641 1198 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183462162 1203 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188841558 1169 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178269764 1199 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135212505 1194 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190363492 1199 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87451548 1113 - 129401213  
i mm10.chr8                C 0 C 0
s canFam3.chr16             17791761 1186 -  59632846  
i canFam3.chr16            I 197 C 0

a score=38570.000000
s hg38.chr4_KI270925v1_alt     62345 57 +    555799 TACACACACTGCATGGAACCCCTGTacgcatac--------acacacac-acaca--------cacactgcacg
s panTro4.chr4             192761598 44 + 193495092 TACACACACTGCACGGAACCCCTGTATGcatat--------acacacag-gca---------------------
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197866173 65 + 198332218 tacacacactgcacggaacccctgtacgcatat--------acacacat-gcacacacgcactcacactgcacg
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113632839 63 + 115148730 TACACACACTGCACAGAACCACTGTACGCATAT--------GCACACAC-ACACA--CTCACTCACACTGCACA
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188842727 53 + 189454096 cacacacaTTGCACGGATCCCCTGTAGATGCAT--------ACACACAC-ACACA------------CTGCACA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178270963 61 + 178775436 cacacacactgcacagaACTCCTGTTTGCACATGTGAACCCACATACAC-GCACG------------CTGCATG
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190364691 33 - 190850796 TACACACACTGCACGGAACCCCTGTATG-------------GCACA----------------------------
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87452661 37 - 129401213 cacacacac-acac---acacacgcacgcaggc--------acacacac-------------------------
i mm10.chr8                C 0 C 0
s canFam3.chr16             17792947 35 -  59632846 --cacgcac--------acacacgtacacacaa--------acacacacaGCA---------------------
i canFam3.chr16            C 0 C 0
e chlSab2.chr7             135213699  0 + 135778131 C
e rheMac3.chr5             183463365  0 + 184069350 C

a score=10284.000000
s hg38.chr4_KI270925v1_alt     62402 9 +    555799 gaactcctg
s ponAbe2.chr4             197866238 9 + 198332218 aaacccctg
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113632902 9 + 115148730 GAACTCTTG
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188842780 9 + 189454096 GAACTCCTG
i macFas5.chr5             C 0 C 0
s calJac3.chr3             190364724 9 - 190850796 GAACCCCTG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87452698 7 - 129401213 --acacCAG
i mm10.chr8                C 0 C 0
s canFam3.chr16             17792982 9 -  59632846 GGATTCCTG
i canFam3.chr16            C 0 I 290
e chlSab2.chr7             135213699 0 + 135778131 C
e papAnu2.chr5             178271024 0 + 178775436 C
e rheMac3.chr5             183463365 0 + 184069350 C
e panTro4.chr4             192761642 0 + 193495092 C

a score=-2984.000000
s hg38.chr4_KI270925v1_alt     62411 10 +    555799 tatgcat--acg
s ponAbe2.chr4             197866247 12 + 198332218 tatgcatacaca
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113632911 12 + 115148730 TACACATACACA
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188842789 10 + 189454096 TTTGCAT--GTA
i macFas5.chr5             C 0 C 0
s calJac3.chr3             190364733 10 - 190850796 TATGTTCATG--
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87452705 10 - 129401213 CATTTACACA--
i mm10.chr8                C 0 C 0
e canFam3.chr16             17792991 290 -  59632846 I
e chlSab2.chr7             135213699  0 + 135778131 C
e papAnu2.chr5             178271024  0 + 178775436 C
e rheMac3.chr5             183463365  0 + 184069350 C
e panTro4.chr4             192761642  0 + 193495092 C

a score=11560.000000
s hg38.chr4_KI270925v1_alt     62421 12 +    555799 cacacgcactca
s panTro4.chr4             192761642 12 + 193495092 cacacgcactca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197866259 12 + 198332218 cacacacacaca
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113632923 12 + 115148730 CACACACACACA
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188842799 12 + 189454096 CACATGCACACA
i macFas5.chr5             C 0 C 0
s mm10.chr8                 87452715 12 - 129401213 CAAATGCACTTA
i mm10.chr8                C 0 I 317
e canFam3.chr16             17792991 290 -  59632846 I
e calJac3.chr3             190364743  0 - 190850796 C
e chlSab2.chr7             135213699  0 + 135778131 C
e papAnu2.chr5             178271024  0 + 178775436 C
e rheMac3.chr5             183463365  0 + 184069350 C

a score=22408.000000
s hg38.chr4_KI270925v1_alt     62433 31 +    555799 cactgcacggaacccctgtacgcatatacac
s panTro4.chr4             192761654 31 + 193495092 cactgcacggaacccccgtatgcatatacac
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197866271 31 + 198332218 cactgcatgtaacccctgtacgcatacacac
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113632935 31 + 115148730 CACTGCACGGAACTTCTGTATGCATATACAC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188842811 31 + 189454096 CACTGCACGGAACTCCTGTATGCACATGTGA
i macFas5.chr5             C 0 C 0
e mm10.chr8                 87452727 317 - 129401213 I
e canFam3.chr16             17792991 290 -  59632846 I
e calJac3.chr3             190364743  0 - 190850796 C
e chlSab2.chr7             135213699  0 + 135778131 C
e papAnu2.chr5             178271024  0 + 178775436 C
e rheMac3.chr5             183463365  0 + 184069350 C

a score=9636.000000
s hg38.chr4_KI270925v1_alt     62464 48 +    555799 acaggcacacacgcactcacactgcacggaactc-----ccgtatgcatatac--
s panTro4.chr4             192761685 48 + 193495092 acaggcacacacgcacacacactgcacggaaccc-----ctgtacgcatatac--
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197866302 31 + 198332218 a----------------cacactgcacggaaccc-----ctgtatgcataca---
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113632966 53 + 115148730 ACA--CACACACACACTCACACTGCATGGACCCCGGTATCTGCATGTATGGacac
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87452727 317 - 129401213 I
e canFam3.chr16             17792991 290 -  59632846 I
e calJac3.chr3             190364743  0 - 190850796 C
e chlSab2.chr7             135213699  0 + 135778131 C
e papAnu2.chr5             178271024  0 + 178775436 C
e macFas5.chr5             188842842  0 + 189454096 C
e rheMac3.chr5             183463365  0 + 184069350 C

a score=22651.000000
s hg38.chr4_KI270925v1_alt     62512 211 +    555799 acacaggcacacacgcactcacactgcatggaacccctgtacgcatatatacacacaggcacacacacacacacacacactgcacggaacc-----cctgtacgcatacgcgcacacacacacactgcacggaactcctgtatgcatatacacacaggcacacacgcactcacactgcacggaactcctgtacgcatatacacacacacacgcact
s panTro4.chr4             192761733 155 + 193495092 a------cacacacgcactcacactgcacagaacccctgtatgc--atatacacacaggcaca-------------------------------------------------cacgcactcacacTGCACGGAACTCCTGTATGcatacacacaca--cacgcactcacacacacTGCACGGAACCCCTGTATGCATAT--ACACACACATGCACT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197866333 177 + 198332218 -------catacgtgcactcacattgcatgg-acccctgtatgc--atatacacacacacaca----catgcactcacactgcatggaccccggtacctgcgtgtacacacacacacacacgcactgcacggaacccctgtatgcatatacacacatacaaatatgcactcacacTGCATGG-ACCCCTGTA------------------------
i ponAbe2.chr4             C 0 C 0
e mm10.chr8                 87452727 317 - 129401213 I
e canFam3.chr16             17792991 290 -  59632846 I
e calJac3.chr3             190364743   0 - 190850796 C
e chlSab2.chr7             135213699   0 + 135778131 C
e papAnu2.chr5             178271024   0 + 178775436 C
e macFas5.chr5             188842842   0 + 189454096 C
e rheMac3.chr5             183463365   0 + 184069350 C
e nomLeu3.chr7b            113633019   0 + 115148730 C

a score=6637.000000
s hg38.chr4_KI270925v1_alt     62723 15 +    555799 cacacacactgcaca
s panTro4.chr4             192761888 11 + 193495092 ----CACACTGCACG
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183463365 15 + 184069350 cacacacactgcaca
i rheMac3.chr5             C 0 C 0
s chlSab2.chr7             135213699 15 + 135778131 CACACACACTGCACG
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87452727 317 - 129401213 I
e canFam3.chr16             17792991 290 -  59632846 I
e calJac3.chr3             190364743  0 - 190850796 C
e papAnu2.chr5             178271024  0 + 178775436 C
e macFas5.chr5             188842842  0 + 189454096 C
e nomLeu3.chr7b            113633019  0 + 115148730 C
e ponAbe2.chr4             197866510  0 + 198332218 C

a score=12216.000000
s hg38.chr4_KI270925v1_alt     62738 18 +    555799 gaacccctgtatgcatat
s panTro4.chr4             192761899 18 + 193495092 GAACCCCTGTATGcatac
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197866510 13 + 198332218 -----CCTGCGTGTacac
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183463380 18 + 184069350 gaactcctgtttgcatgt
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178271024 18 + 178775436 GACCCCGTACctgcgtgt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135213714 18 + 135778131 GAACCCCTGTATGCATGc
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87452727 317 - 129401213 I
e canFam3.chr16             17792991 290 -  59632846 I
e calJac3.chr3             190364743  0 - 190850796 C
e macFas5.chr5             188842842  0 + 189454096 C
e nomLeu3.chr7b            113633019  0 + 115148730 C

a score=46285.000000
s hg38.chr4_KI270925v1_alt     62756 48 +    555799 acacacacacacacgcactcacactgcacggaacccctgtatgcatac
s panTro4.chr4             192761917 26 + 193495092 acacacacacacacgcactcacacTG----------------------
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197866523 48 + 198332218 acacacacacacacacacacacactgcacagaactcctatatgcatat
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113633019 48 + 115148730 acacacacacacacacacacacacTGCACAGAACCCCTGTATGCATGT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183463398 38 + 184069350 --------acacatgcacacacactgcacggaactcctgtatgcac--
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178271042 38 + 178775436 --------acaca--cacacacactacacagaacccctgtatgcacat
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135213732 40 + 135778131 --------acacacacacacacactgcacggaacccctgtatgcacat
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87452727 317 - 129401213 I
e canFam3.chr16             17792991 290 -  59632846 I
e calJac3.chr3             190364743  0 - 190850796 C
e macFas5.chr5             188842842  0 + 189454096 C

a score=26712.000000
s hg38.chr4_KI270925v1_alt     62804 19 +    555799 ------acacacacacacgcgcact
s ponAbe2.chr4             197866571 19 + 198332218 ------acacacacacacgcatgca
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113633067 19 + 115148730 ------ACACACACTCATGCACGCT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183463436 25 + 184069350 atgtgaacccacatacacgcacgct
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188842842 19 + 189454096 ------ACCCACATACACGCACGCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178271080 25 + 178775436 gcacacacacacacacatgcacgct
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135213772 25 + 135778131 gtacacacacacacacacgcacgct
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87452727 317 - 129401213 I
e canFam3.chr16             17792991 290 -  59632846 I
e calJac3.chr3             190364743  0 - 190850796 C
e panTro4.chr4             192761943  0 + 193495092 C

a score=919858.000000
s hg38.chr4_KI270925v1_alt     62823 337 +    555799 ------cacTCTGCATGGACCCCGTACCTGCATGT--A-------CACACACACACACTGCACAGAACCCCTGTATG--CA--TGTACACACACATACTGCACAGATGCACACACCTCCCCCGCATGGAaaccttctcaaggtcactcagttagcaaatgacacagctaaaccttgaaatcactcagactggctctggagtG-AGGCCATAGAATAGTGTCTTCAAGGAACAAACTAAAACTGGTGATAACAAAACGGCTAGCAGCACTTTAGGGAAAAAGAACACATTTAATAAGTGGCTGGAAGAGATCATGTAGTAGGTTcattttcaaaccgtgtcccttagatctccagttt
s panTro4.chr4             192761943 330 + 193495092 -------------CATGGACCCCATACCTGCATGT--A-------CACACACACACACTGCACAGAACCCCTGTATG--CA--TGTACACACACATACTGCACAGATGCACACACCTCCCCTGCATGGAaaccttctcaaggtcactcggttagcaaatgacacagctaaaccttgaaatcactcagactggctctggagtG-AGGCCATAGAATAGTGTCTTCGAGGAACAAACTAAAACTGGTGATAACAAAACGGCTAGCAGCACTTTAGGAAAAAGGAACACATTTAATAAGTGGCTGGAAGAGATCATGTAGTAGGTTcattttcaaaccgtgtcccttagatctccagttt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197866590 339 + 198332218 ------cacTG--CATGGACCCCGTACCTGcatgtaca-------cacacacacacactgcacagaacccctgtatgcaca--tgtacacacacatactgcacagacacacacacCTCCCCCACATGGAaaccttctcaaggtcactcagttagcaaatgacacagctaaaccttgaaatcacgcagactggctctggagtG-AGGCCATAGAATAGTGTCTTCAAGGAACAAACTAAAACTGGTGATAACAAAACGACTAGCAGCACTTTAGGAAAAAAGAACACATTTAATAAGTGGCTGGAAGAGATCATCTAGTAGGTTcattttcaaactgtgtcccttagatctccagttt
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113633086 329 + 115148730 ------G------CATGGACCCCATACCTGCGTGT-----------acacacacacactgcacagaacccccgtatg--ca--tgtacacacacatactgcacagacacacacacCTCCCCTGCATGGAaaccttctcaaggtcactcagttagcaagtgacacagctaaacattgaaatcatgcagactggctctggagtG-AGGCCATAGAATAGTGTCTTCAAGGAACAAACTAAAACTGGTGATAACAAAACGACTAGCAGCACTTTAGGAAAAAAGAACACACTTAATAAGTGGCTGGAAGAGATCATCTAGTAGGTTcattttcaaaccgtgtcccttagatctccagttt
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183463461 326 + 184069350 ------g------catggaccccgtacctgcgtgt--a-------cacacacacacactacacaGAACCCCTCTATG--CA--TGTACACACACATACTGCACAGACACACACACCTCCCGTGCATGGAAAC---ctcaagatcactcggttagcaaatgacacagctaaaccttgaaatcacgcagactggctctggtgtG-AGGCCATAGAATAGTGTCTTCAAGGAACAAACTAAAACTAGTGATAACAAAATGACTAGCAGCACTTTAGGAAAAAAG--AACATTTACTAAGTGGCTGGAAGAGATCATTTAGCAGGTTCATTTTCAAACCGCATCCCTTAGATCTCCagttt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188842861 329 + 189454096 ------G------CATGGACCCCATACCTGCGTGT--a-------cacacacacacactacacagaacccctctatg--ca--tgtacacacacatactgcacagacacacacacCTCCCGTGCATGGAaaccttctcaagatcactcggttagcaaatgacacagctaaaccttgaaatcacgcagactggctctggtgtG-AGGCCATAGAATAGTGTCTTCAAGGAACAAACTAAAACTAGTGATAACAAAACGACTAGCAGCACTTTAGGAAAAAAG--AACATTTACTAAGTGGCTGGAAGAGATCATTTAGCAGGTTCATTTTCAAACCGCATCCCTTAGATCTCCagttt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178271105 331 + 178775436 ------g------catggaccctgtacctgcatgt--a-----cccacacacacacactacacagaacccctctatg--ca--tgtagacacacatactgcacagacacacacacctcccGTGCATGGAAACCTTCTCAAGATAACTCAGTTAGCAAATGACACAGCTAAACCTTGAAATCATGCAGACTGGCTCTGGTGTG-AGGCCATAGAATAGTGTCTTCAAGGAACAAACTAAAACTAGTGATAACAAAACGACTAGCAGCACCTtaggaaaaaag--aacatttactAAGTGGCTGGAAGAGATCATTTAGCAGGTTCATTTTCAAACCGCATCCCTTAGATCTCCAGTTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135213797 329 + 135778131 ------g------catggaccctgtacctgcatgt--a-----cccacacatacacactacacagaacccctctatg--ca--tgtacacacacatactgcacagacacacacacCTCCCGCACATGGAaaccttctcaaggtcactc----agcaaatgatacagctaaaccttgaaatcatgcagaccggctctggagtG-AGGCCATAGTATAGTATCTTCAAGGAACAAACTAAAACTAGTGATGACAAAATGACGAGCAGCACTTTAGGAAAAAAGAAAACATTTACTAACTGGCTGGAAGAGATCATTTAGCAGGTTCATTTTCAAACCGCATCCCTTAGATCTCCagttt
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190364743 343 - 190850796 CACACTG------CATAGACCCAGTACCTGTGTGT--acacaccacacacacacacactgcacagaccccttatata--cacctgttcacacacgcactgaacacacacacacacacacCCCACATGGAaaccttctcaaggtcactc----agtaaatgacacagctaagcgttgaaatcaggcagactggctctggcgtGAAGGCCATAGAATAGTGTCTTCAAGAAACAAATTGAAACTGGTGATAACAAAATGACTAGCAGCACTTTAGCAAAAAATAAAATATTGAGTCAGTGGCTGGAGGAGATCATTTCGTAGGTCCATTTTCAAACGGCATCCCTGAGATATCCagttt
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87452727 317 - 129401213 I
e canFam3.chr16             17792991 290 -  59632846 I

a score=4500.000000
s hg38.chr4_KI270925v1_alt     63160 1 +    555799 c
s panTro4.chr4             192762273 1 + 193495092 c
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197866929 1 + 198332218 c
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113633415 1 + 115148730 c
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183463787 1 + 184069350 c
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188843190 1 + 189454096 c
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178271436 1 + 178775436 C
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135214126 1 + 135778131 c
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190365086 1 - 190850796 c
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87453044 1 - 129401213 c
i mm10.chr8                I 317 C 0
e canFam3.chr16             17792991 290 -  59632846 I

a score=2052476.000000
s hg38.chr4_KI270925v1_alt     63161 631 +    555799  
s panTro4.chr4             192762274 631 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197866930 630 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113633416 637 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183463788 628 + 184069350  
i rheMac3.chr5             C 0 I 38
s macFas5.chr5             188843191 630 + 189454096  
i macFas5.chr5             C 0 I 2
s papAnu2.chr5             178271437 630 + 178775436  
i papAnu2.chr5             C 0 I 1
s chlSab2.chr7             135214127 630 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190365087 620 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87453045 611 - 129401213  
i mm10.chr8                C 0 C 0
s canFam3.chr16             17793281 578 -  59632846  
i canFam3.chr16            I 290 C 0

a score=6456.000000
s hg38.chr4_KI270925v1_alt     63792 3 +    555799 AAA
s panTro4.chr4             192762905 3 + 193495092 AAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197867560 3 + 198332218 AAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113634053 3 + 115148730 AAA
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188843823 3 + 189454096 AAA
i macFas5.chr5             I 2 C 0
s papAnu2.chr5             178272068 3 + 178775436 ggg
i papAnu2.chr5             I 1 C 0
s chlSab2.chr7             135214757 2 + 135778131 -aa
i chlSab2.chr7             C 0 I 1
s calJac3.chr3             190365707 3 - 190850796 AAA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87453656 3 - 129401213 GGA
i mm10.chr8                C 0 C 0
s canFam3.chr16             17793859 3 -  59632846 AAA
i canFam3.chr16            C 0 C 0
e rheMac3.chr5             183464416 38 + 184069350 I

a score=81879.000000
s hg38.chr4_KI270925v1_alt     63795 22 +    555799 AAGAACAAATATATCCTGCCTG
s panTro4.chr4             192762908 22 + 193495092 AAGAACAAATAGGTCCTGCCTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197867563 22 + 198332218 AAGAACAAATAGGCCCTGCCTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113634056 22 + 115148730 AAGAACAAGTATGTCCTGCCTG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183464454 22 + 184069350 AAGAACAAATAGGTCCTGCTTG
i rheMac3.chr5             I 38 C 0
s macFas5.chr5             188843826 22 + 189454096 AAGAACAAATAGGTCCTGCTTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178272071 22 + 178775436 aagaacAAATAGGTCCTGCCTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135214760 22 + 135778131 aacaacaaATAGGTCCTGCCTG
i chlSab2.chr7             I 1 C 0
s calJac3.chr3             190365710 22 - 190850796 ATGGACAAACAGGTCCTGCCTG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87453659 22 - 129401213 AAGAATGGGTAAGAACTGTCTG
i mm10.chr8                C 0 C 0
s canFam3.chr16             17793862 22 -  59632846 AAAGACAAAGAGATCCTGCCTG
i canFam3.chr16            C 0 I 1027

a score=1269752.000000
s hg38.chr4_KI270925v1_alt     63817 395 +    555799 AAAACTGAGTTTCGGCACCTCA-CCCT-GCTCACTGGAGCACCATAGCTAATGAATGCCAGGTTCTCACCAAACTCACCAGATTAATCGATCCGTCTCCTGGAAGGAGGAGCAAGTAAGGGGACTCAGTTGTCCTCAAGAGAGTCAGATGACACCACTGTGGGAAAGAAGAGGTTAAAATTGAAAG----------AGGTTCACACGGTGAcagggataccaaattgtcctgaaatgagcagcacagtcttgtaaa-------------atgaagaactgtcctgcTCAATGCGTCACGGATGCCCCCGATAAGAAATGGTAGAAAGAACAACAGGAACACCCTCTCCAAATTTTTCCC-GCAGAATTAGGGTAATGGCGGGAAGTCCCTTCTCTATGACCCTAGGTGCAAAAGTAGGGGG
s panTro4.chr4             192762930 395 + 193495092 AAAACTGAGTTTCGGCACCTCA-CCCT-GCTCACTGGAGCACCATAGCTAATGAATGCCAGGTTCTCACCAAACTCACCAGATTAATCGATCCGTCTCCTGGAAGGAGGAGCAAGTAAGGGGACTCAGTTGTCCTCAAGAGAGTCAGATGACACCACTGTGGGGAAGAAGAGGTTAAAATTGAAAG----------AGGTTCACACggtgacagggataccaaattgtcctgaaatgagaagcacagtcttgtaaa-------------atgaagaactgtcctgcTCAATGCGTCACGGATGCCCCCGATAAGAAATGGTAGAAAGAACAACAGGAACACCCTCTCCAAATTTTTCCC-GCAGAATTAGGGTAATGGCGGGAAGTCCCTTCTCTATGACCCTAGGTGCAAATGTAGGGGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197867585 394 + 198332218 AAAACTGAGTTTCGGCACCTCA-CCCT-GCTCACTAGAGCACCATAGCTAATGAATGCCAGGTTCTCACCAAACTCACCAGATTAATCAATCCATCTCCTGAAAGGAGGAGCAAGTAAGGGGACTCAGTTGTCCTCAAGAGAGTCAGATGACACCACTGTGGGGAAGAAGAGGTTAAAATTG--AG----------AGGTTCACACAGTGACAGGGATACCAAATTGTCCTGAAATGAGAAGCACAGTCTTATAAA-------------ATGAAGAACTGTTGTGCTCAATGCGTCACTGATGCCCCTGATAAGAAATGGTAGAAAGAACAACAGAAACACCCTCTCCAAATTTTTCCCTGCAGAATTAGGGTAATGGCGGGAAGTCCCTTCTCTATGACCCTAGGTGCAAAAGTAGGGAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113634078 396 + 115148730 AAAAGTGAGTTTCGGCACCTCA-CCCT-GCTCACTAGAGCACCTCAGCTAATGAATGCCAGGTTCTCACCAAATTCACCAGATTAATCAGTCCGTCTCCTGAAAGGAGGAGCAAGTAAGGGGACTCAGTTGTCTTCAAGAGAGTCAGATGACACCACTGTGGGGAAGAAGAGGTTAAAATTGAAAG----------AGGTTCACACAGTGACAAAGATAGCAAATTGTCCTGAAATGAGAAGCACAGTCTTGTAAA-------------ATGAAGAACTGTCGCACTCAATGTGTCACTGATGCCCCCGATAAGAAATGGTAGAAAGAACAACAGAAACACCCTCTCCAAATTCTTCCCTACAGAATTAGGGTAATGGGGGGAATTCCCTTCTCTATGACCCTAGGTGCAAAAGTAGGGAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183464476 399 + 184069350 AAAGGTGAGTTTTGGCACCTCG-CCCT-GCTCACTAGAGCACCATCGCTAATGCA--CCAGGTTCTCACCAAACTCACCAGATT-TTCAGTCCACCCCCTGAAAGGAGAAGCAAGTAAGGGGACTCAGTTGTCCTCAAGAGAGTCAGAGGGCACCACTGTGGGGAATGAGAGGTTCAAACTGAAAGAGG---TTTTAGGTTCACACAGTGACCGGGATACC-AATTGTCCTGAAATGAGAAGTACAGTCTTGTAAA-------------ATGAAGAACGGTCGTGCTCACTGTGTTGCTGACGCCCCCAATAAGAAACGGTAGAAAGAACAACAGAAACACACTCTCCAAATGCCTCCCTGGAGAATTAGGGTAATGGCAGGAAGTCCCTTCTCTAAGACCCTAAGTGCAAAGGTAGGGAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188843848 401 + 189454096 AAAGGTGAGTTTTGGCACCTCG-CCCT-GCTCACTAGAGCACCATCGCTAATGAATGCCAGGTTCTCACCAAACTCACCAGATT-TTCAGTCCACCCCCTGAAAGGAGGAGCAAGTAAGGGGACTCAGTTGTCCTCAAGAGAGTCAGAGGGCACCACTGTGGGGAATGAGAGGTTCAAACTGAAAGAGG---TTTTAGGTTCACACAGTGACCGGGATACC-AATTGTCCTGAAATGAGAAGTACAGTCTTGTAAA-------------ATGAAGAACGGTCGTGCTCACTGTGTTGCTGACGCCCCCAATAAGAAACGGTAGAAAGAACAACAGAAACACACTCTCCAAATGCCTCCCTGGAGAATTAGGGTAATGGCAGGAAGTCCCTTCTCTAAGACCCTAGGTGCAAAGGTAGGGAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178272093 401 + 178775436 AAAGGTGAGTTTTGGCACCTCA-CCCT-GCTCACTAGAGCACCATCGATAACGAATGCCAGGTTCTCACCAAACTCACCAGATT-TTCAGTCCACCCCTTGAAAGGAGGAGCAAGTAAGGGGACTCAGTTGTCCTCAAGAGAGTCAGAGGGCACCACTGTGGGGAATAAGAGGTTCAAACTGAAAGAGG---TTTTAGGTTCACACAGTGACAGGGATACC-AATTGTCCTGAAATGAGAAGTACAGTCTTGTAAA-------------ATGAAGAACAGTCATGCTCACTGTGTTACTGATGCCCCCAATAAGAAACGGTAGAAAGAACAACAGAAACACACGCTCCAAATGCCTCCCTGGAGAATTAGGGTAATGGCAGGAAGTCCCTTCTCTAAGACCCTAGGTGCAAAggtagggag
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135214782 401 + 135778131 AAAGGTGAGCTTTGGCACCTCA-CCTT-GCTCACTAGAGCACCATCGCTAATGAATGCCAGGTTCTCACCAAACTCACCAGATT-ATCAGTCTGCCTCCTGAAAGGAGGAGCAAGTAAGGGGACTCAGTTGTCCTCCAGAGAGTCAGATGGCACCACTGTGGGGAAGAAGAGGTTCAAACTGAAAGAGG---TTTTAGGTTCACACAGTGACAGGGATACC-AATTGTCCTGAAATGAGAAGTACAGTCTTGTAAA-------------ATGAAGAACGGTCGTGCTCACTGTGTCACTGATGCCCCCAATAAGAAACGGTAGAAAGAACAACAGAAACACACTCTCCAAATGCCTCCCTGGAGAATTAGGCTAATGGCAGGAAGTCCCTTCTCTACGACGCTAGGTGCAAAAGTAGGGAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190365732 402 - 190850796 ACAAGTGAGTTTTGGCACCTCA-CCCT-GCTCTCTAGAGCACCATAGCTGATGAATGCCAGGTTCTCTCCAAACTCACCAGATTAATCAGGCCATCTCCTGAAAGGAGGAGCAAGTAAGGGGACTCAGTTGTCCTCAAGAGAGTCAGATGGCACCACTGTGGGAAAGAAGAGGTTAAAATTGAAAGAGG---TTTTGTG-TCACACAGTGACAGGGATACCAAAGTGTCCTGAAATGAGAAGCACAGTCTTGTAAA-------------ATGAAGAAATGAAGTGCTCAGTGTGTCGCTGATGCCCTGGATAAGACATGGCAGAAAGAGCCACAGAAACGCCCTCTCAAAGTGTTTCCCTGCAGAACAAGGGTAACGGCGGGAAGTCCCTTCTCTATGACCCTAGGTGGAAAAGCAAGGAG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87453681 373 - 129401213 G----------TTGGATCTTCA-TCATAGCCTTCTAGAAATTCATATTCAGAGTGTAGCAAGCTCTTAGTAAGTT--TTGAGCTAACTAGACCATCTACCAAGAACAAGGATAAGTATTACACATCCAGGACTATCAGGGAAGGCAGATAACATAATTGTGTGTAA--AGAGATGAAAAATCAAGGGAG-TATTTTGAGTTTATACAATAAC----------AGTCTCCCAGAAA-----GGCATAACCCTGTATA-------------ATGAAAAA-TGCTATA-TTAATGTACCATTAATGCCACCAATAAGAAATGATAAAAATATTAACAGGAATGCCCTATC--AACATCCTACTGGACACTGTAGGTAATAGCAGAAAATCCTTTCTGTGTGACTCTAGATTAAAAAGTAAGGAG
i mm10.chr8                C 0 C 0
s canFam3.chr16             17794911 401 -  59632846 AAAAATGAATTTTACCAATTCAGCTCT-GCCCATTAGAGAGCCATGGTGAATGAATGCCAGGCTGTCACTCATCTCGCTGGGTTAATCAGTCCATCTCCCAAGTAGAGGAGCAAATAATGGGACTCAGTGGTTCTCAAGGGTGCCAGATGAAACCTCTGGGAGAAAGAAA------------TAAGAGGGTATTTTTGGTTCAGACAATTATAGGGGTGCTAACCTGTCCTGACATGAG--GTGCCATTCTGTACAATGAGTCTATGCGATGAAGAATTGTCAAGCCA---GTACCAGTAACACATCCAGAAGGAAATGATAGAAAG-GTGATAGAAACACTTTTTCAACATTTCTACT-ACAGATTGAAGGAAATGGCAGAAAGTCATTTCTCTATGACTCCAGGTGTAAAAGTAGGAAG
i canFam3.chr16            I 1027 C 0

a score=110020.000000
s hg38.chr4_KI270925v1_alt     64212 49 +    555799 AAAAAGAAAAGCATTCTCCACTCCAACC----------cacacacacacaca--cacacac
s panTro4.chr4             192763325 53 + 193495092 AAAAAGAAAAGCATTCTCCACTCCAACCcac------acacacacacacaca--cacacac
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197867979 55 + 198332218 AAAAAGAAAAGCATTCTCCACTCCAACCcac------acacacacatacacatgcacacac
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113634474 45 + 115148730 AAAAAGAAAAGCATTCTCCACTCCAACCCCC-------CCCACTC---------cacacac
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183464875 45 + 184069350 AAAAAGAAAAGTATTCTCCACCCCAACCCTA--------------acacaca--cacacac
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188844249 51 + 189454096 AAAAAGAAAAGTATTCTCCACCCCAACCCTA--------acacacacacaca--cacacac
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178272494 41 + 178775436 aaaaagaaaagcattctcCACCCCagcccta------------------aca--cacacac
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135215183 59 + 135778131 AAAAAGAAAAGCATTCTCCACCCCAGCCCTAacacacacacacacacacaca--cacacac
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190366134 48 - 190850796 -AAAAGAAAAGCGTTCTCCACCCCAATCcac----------acacacacaca--cacacac
i calJac3.chr3             C 0 I 261
s mm10.chr8                 87454054 43 - 129401213 -AAGAGATAAAGACTCTTC-CCCTAACCTGA--------------ATGTTCA--CACAAAC
i mm10.chr8                C 0 C 0
e canFam3.chr16             17795312  0 -  59632846 C

a score=608232.000000
s hg38.chr4_KI270925v1_alt     64261 204 +    555799 acacacacatacacaAAAGATCACTTCTAACTGCAATCATGAA-GTCTCCCAAGGAAAAAAA-----TCAAGGTCCTAGCAGCAAGAAT-TTTTTTATAGATGTCGAGATATGCAAGAAGCAGAGAGGGGGTAGTATGGAAAAGGAATAGGGACAGAAAAACAGAGGG-TACAGGCAAGAAAGGGCAAATGG-GCGTAATGTACAAGTAGGTG
s panTro4.chr4             192763378 204 + 193495092 acacacacacacacaAAAGATCACTTCTAACTGCAATCATGAA-GTCTCCCAAGGAAAAAAA-----TCAAGGTCCTAGCAGCAAGATT-TTTTTTATAGATGTCGAGATATGCAAGAAGCAGAGAGGGGGTAGTATGGAAAAGGAATAGGGACAGAAAAATAGAGGG-TACAGGCAAGAAAGGGCAAATGG-GCATAATGTACAAGTAGGTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197868034 204 + 198332218 acacacacacacacaAAAGATCACTTCTGACTGCAATCATGAA-GTCTCCCAAGGAAAAAAA-----TCAAGGTCCTAGCAGCAAGAAT-TTTTTTATAGAAGTCGAGATATGCAAGAAGCAGAGAGGGTGTAGTATGGAAAAGGAATAGGGACAGAAAAATAGAGGG-TACAGGCAAGAAAGGGCAAATGG-GAGTAATGTACAAGTAGGTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113634519 196 + 115148730 acacacacac--------GATCACTTCTAGCTGCAATCATGAA-GTCTCCCAAGGAAAAAAA-----TCAAGATCCTAGCAGCAAGAAT-GTTTTTATAGATGTCGAGATATGCAAGAAGCAGAGAGGGTATAGTATGGAAAAGGAATAGGGACAGAAAAATAGAGGG-TGCAGGCAAGAAAAGGCAAATGG-GAGTAATATACAAGTAGGTG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183464920 205 + 184069350 acacacacacacacacacGATCACTTCTAATGGCAATCATGAA-GTCTCCCAAGGAAAAAAC-----TCAAGTTCCTAGCAGCAATAACTTTTTTTATAGATGTCGAGATATGCAAGAGGCAGAAAGGGCATAGTATGGGAAAGGTATAGGGACAGAAAAATAGAGGG-TACAGGCAAGAAAGGGCAGATGG-GAGTAATGTACAAGTAGGTG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188844300 205 + 189454096 acacacacacacacacacGATCACTTCTAATGGCAATCATGAA-GTCTCCCAAGGAAAAAAC-----TCAAGTTCCTAGCAGCAATAACTTTTTTTATAGATGTCGAGATATGCAAGAGGCAGAAAGGGTATAGTATGGGAAAGGTATAGGGACAGAAAAATAGAGGG-TACAGGCAAGAAAGGGCAAATGG-GAGTAATGTACAAGTAGGTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178272535 204 + 178775436 acacacacacacacacacgatcacTTCTAATGGCAATCATGAA-GTCTCCCAAGGAAAAAAC-----TCAAGTTCCTAGCAGCAATAAC-TTTTTTATAGATGTCGAGATATGCAAGAGGCAGAAAGGGTATAGTATGGGAAAGGTATAGGGACAGAAAAATAGAGGG-TACAGGCAAGAAAGGGCAAATGG-GAGTAATGTACAAGTAGGTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135215242 205 + 135778131 acacacacacacacacacGATCACTTCTAATGGCAATCATGAA-GTCTCCCAAGGAAAAAAT-----TCAAGTTCCTAGCAACAATAACTTTTTTTATAGATGTCGAGATATGCAAGAGGCAGAGAGGGTATAGTATGAGAAAAGAATAGGGACAGAAAAATAAAGGG-TACAGGCAAGACAGGGCAAATGA-GAGTAATGTACAAGTAGGTG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190366443 202 - 190850796 acacacacacacaca---GATCACCTTTAACGGCAGTCATGAAGGTCTCCCGAGGAGAAAAA-----ACAAGTTCCTAGCAGCAAGAATGTTTTTTATAGATGTAGAGATATGCAAGAGGCAGACAGGGAATAGCAGGGAAAAGGAATAGGG-CAGAAAAATAGAGGG-TCTAGTCCAGAAAGCGTGAGTGG-GAGTAACGTACAAGCAGGTG
i calJac3.chr3             I 261 C 0
s mm10.chr8                 87454097 178 - 129401213 ------------------CATAGCTTTTAACTCAAACCACAAA-GTCCTCCAAGGGAAAAAAGCATTCCAAGTTCCTAGAAATATAAAC-TGTTTTACAG----------ATGCAACAGGCAGAAGGGAGAC--TATGAGACAGAAATAGGGCCAGAAAAAGAGAGTGCTACATT---GAAAAGGCAAATGGAGAATAAAGGGTGAGTTGGTG
i mm10.chr8                C 0 I 6030
e canFam3.chr16             17795312   0 -  59632846 C

a score=1270164.000000
s hg38.chr4_KI270925v1_alt     64465 510 +    555799  
s panTro4.chr4             192763582 460 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197868238 460 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113634715 455 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183465125 461 + 184069350  
i rheMac3.chr5             C 0 I 105
s macFas5.chr5             188844505 461 + 189454096  
i macFas5.chr5             C 0 I 62
s papAnu2.chr5             178272739 461 + 178775436  
i papAnu2.chr5             C 0 I 63
s chlSab2.chr7             135215447 461 + 135778131  
i chlSab2.chr7             C 0 I 2
s calJac3.chr3             190366645 446 - 190850796  
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87454275 6030 - 129401213 I
e canFam3.chr16             17795312   0 -  59632846 C

a score=5746.000000
s hg38.chr4_KI270925v1_alt     64975 3 +    555799 atc
s panTro4.chr4             192764042 3 + 193495092 atc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197868698 3 + 198332218 atc
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113635170 3 + 115148730 atc
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188845028 3 + 189454096 ATT
i macFas5.chr5             I 62 C 0
s papAnu2.chr5             178273263 3 + 178775436 ATT
i papAnu2.chr5             I 63 C 0
s chlSab2.chr7             135215910 3 + 135778131 att
i chlSab2.chr7             I 2 C 0
s calJac3.chr3             190367091 3 - 190850796 ATT
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87454275 6030 - 129401213 I
e canFam3.chr16             17795312 0 -  59632846 C
e rheMac3.chr5             183465586 105 + 184069350 I

a score=842776.000000
s hg38.chr4_KI270925v1_alt     64978 291 +    555799 cttac-------------------caaggtcacagagacagctaatgacTTTATAAGTTTTGGAAAACAAGTACTATGTCTTACATTTCTAATAGAATGTTATTTAATTTTGAAAACATCTTTTAATCCAGCACTTTGAAAGTGATCAGCTTTTAATGGAATGCCTTTTGCCCATGAAAATTGAACTTTTGAAAATAACGTCTGGTT----------AAACAAAACAAAACAGAA---AATCCTCTCACAACAGATGTAGTGTAACCAGATTACAACTTAATCTCACAACTGACCTTCAAAGAAAATACTAAATTTCTGTGTT
s panTro4.chr4             192764045 291 + 193495092 cttac-------------------caaggtcacagagacagctaatgacTTTATAAGTTTTGGAAAACAAGTACTATGTCTTACATTTCTAATAGAATGTTATTTAATTTTGAAAACATCTTTTAATCCAGCACTTTGAAAGTGATCAGCTTTTAATGGAATGCCTTTTGCCCATGAAAATTGAACTTTTGAAAATAACATCTGGTT----------AAACAAAACAAAACAGAA---AATCCTCTCACAACAGATGTAGTGTAACCAGATTACAACTTAATCTCACAACTGACCTTCAAAGAAAATGCTAAATTTCTGTGTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197868701 301 + 198332218 cttac-------------------caaggtcacagacacagctaatgacTTTATAAGTTTTGGAAAACAAATACTATGTCTTACATTTCTAATAGAGTGTTATTTAATTTTGAAAACATCTTTTAATCCAGCACTTTGAAAGTGATCAGCTTTTAATGGAATGCCTTTTGCCCATGAAAATTGAACTTTTGAAAATAACATCTGGTTaaacaaaacaaaacaaaacaaaacagaa---AATCCTCTCACAACAAATGTAGTGTAACCAGATTACAACTTAATCTCACAACTGACCTTCAAAGAAAATGCTAAATTTCTGTGTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113635173 294 + 115148730 cttac-------------------caaggtcacagagacaggtaacgacTTTATAAGTTTTAGAAAACAAGTACTATGCCTTACATTTCTAATAGAGTGTTATTTAATTTTGAAAACATCTTTTAATCCAGCACTTTGAAAGTGATCATCTTTTAATGGAATGCCTTTTGCCCATGAAAATTGAACTTTTGAAAATAACATCTGGTT----------AAACAAAACAACACAAAACAGAATCCTCTGACAACAGATGTAGTGTAACCAGATTACAACTTAATTTCATAACTGACCTTCAAAGAAAATGCTAAATTTCTGTGTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183465691 296 + 184069350 CTTAC-------------------CAAGGCCACAGAGACAGCTAACGACTTTATACGTTTTGGAAAACAAGTACTCTGCCTTGCATTTCTAATAGACCGTTATTTAATTTGGAAAACATCTTTTAATCCAGCACTTCAAAAGTGATCAGCTTTTAATGGAATACCTTTTGCCCATGAAAACTGAACTTTTGATAATAACATCTGGTT-----aaacaaaacaaaacaaaacagaa---AATCCTCTCACAACAGATGTAGTGTAACCAGATTACAACTTAATCTCACAACTGACCTTGAAAGAAAATGCTAAATCTCTGTGTT
i rheMac3.chr5             I 105 C 0
s macFas5.chr5             188845031 296 + 189454096 CTTAC-------------------CAAGGCCACAGAGACAGCTAACGACTTTATACATTTTAGAAAACAAGTACTCTGCCTTGCATTTCTAATAGACCGTTATTTAATTTTGAAAACATCTTTTAATCCAGCACTTCAAAAGTGATCAGCTTTTAATGGAATACCTTTTGCCCATGAAAACTGAACTTTTGATAATAACATCTGGTT-----AAACAAAACAAAACAAAACAGAA---AATCCTCTCACAACAGATGTAGTGTAACCAGATTACAACTTAATCTCACAACTGACCTTGAAAGAAAATGCTAAATCTCTGTGTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178273266 296 + 178775436 CTTAC-------------------CAAGGTCACAGAGACAGCTAACgactttatacattttagaaaacaagTACTCTGCCTTGAATTTCTAATAGaccattatttaattttgaaaacatctTTTAATCCAGCACTTCAAAAGTGATCAGCTTTTAATGGAATACCTTTTGCCCATGAAAACTGAACTTTTGATAATAACATCtggtt-----aaacaaaacaaaacaaaacagaa---aatcctcTCACAACAGATGTAGTGTAACCAGATTACAACTTAATCTCACAACTGACCttgaaagaaaatgctaaatCTCTGTGTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135215913 315 + 135778131 cttacaaggtcacagagATTCTTACAAGGTCACAGAGACAGCTAACGACTTTATACGTTTTAGAAAACAAGTACTCTGCCTTGCATTTCTAATAGACCGTTATTTAATTTTGAAAACATCTTTTAATCCAGCACTTCGAAAGTGATCAGCTTTTAATGGAATACCTTTTGCCCATGAAAACTGAACTTTTGAAAATAACATCTGGTT-----AAACAAAACAAAACAAAACAGAA---AATCCTCTCACAACAGATGTAGTGTAACTAGATTACAACTTAATATCACAACTGACCTTAAAAGAAAATGCTAAATCTCTGTGTT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190367094 288 - 190850796 CTTA--------------------TGAGGTCACATAGACGGCTGACGACTTGATAAGTTTTTGGAAACAAGTACTATGTCTTACATTTCTAATATAATGTTATTTAATTTTTAGAACATCTTCTAATCCAGCACTTTGAAAGTGATCCGTTTTTAATGGAATAACTTTTGCCCACGAAAACTGAACTTTTGCAAATAACGTCTGGTA----------AAACAAAACAAAACAGAA---AATCCTCTAACAACAGATGTAGTGTGGCCAGATTACAACCCAATCTCAC-ACTGTCCCTCAAAGAAGATGCT-AATTTTTGTGTT
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87454275 6030 - 129401213 I
e canFam3.chr16             17795312   0 -  59632846 C

a score=550043.000000
s hg38.chr4_KI270925v1_alt     65269 190 +    555799 CAGATACTTCCTGAATGGGGTAACTAGGTTATCA-TT-TTAAACATCCTCATTATGTAATAAC-AAAAATGTCACCCTGAATTCATCCAATCAC-AAGATTTTTGACATAAAAATATTTCCCATAAATATAAAAATGATTGTCTATAAATAATAAAGCCATGAACAATAGCCATAGAGCTAAGATATTAAATCT
s panTro4.chr4             192764336 190 + 193495092 CAGATACTTCCTGAATGGGGTAACTAGGTTATCA-TT-TTAAACATCCTCATTATGTAATAAC-AAAAATGTCACCCTGAATTCATCCAATCAC-AAGATTTTTGACATAAAAATATTTCCCATAAATATAAAAATGATTGTCTATAAATAATAAAGCCATGAACAATAGCCATAGAGCTAAGATATTAAATCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197869002 190 + 198332218 CAGATACTTCCTGAATGGGGTAACTAGGTTATCA-TT-TTAAACATCCTCGTTACATAATAAC-AAAAATGTCACCCTGACTTCATCCAATCAC-AAGATTTTTGACATAAAAATATTTCCCATAAATATAAAAATGATTGTCTATAAATAATAAAGCCATGAACAATAGCCATAGAGCTAAGATATTAAATCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113635467 190 + 115148730 CAGATGCTTCCTGAATGGGGTAACTAGGTTATCA-TT-TTGAACATCCTCGTTATGTAATAAC-AAAAATGTCACCCTGACTTCATCCAATCAC-AAGATTCTTGACATAAAAATATTTCCCATAAATATAAAAATGATTGTCTATAAATAATAAAGCCATGAACAATAGCCATAGAGCTAAGAGATTAAATCT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183465987 185 + 184069350 CAGACACTTCCTGAAC-GGGTAACTACGCTGTCA-TT-TCAAACACCCTCGTTAC---ATAAC-ACGAATGTCTCCC-GACTTCATCCAATCAC-AAGATTTGTGACATAAAAATATTTCCCATAAATATAAAAATTATTGTCTATAAATAATAAAGCCATGAACAATAGCCATAGAGCTGAGATATTAAATCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188845327 185 + 189454096 CAGACACTTCCTGAAC-GGGTAACTACGCTGTCA-TT-TCAAACACCCTCGTTAC---ATAAC-ACGAATGTCTCCC-GACTTCATCCAATCAC-AAGATTTGTGACATAAAAATATTTCCCATAAATATAAAAATTATTGTCTATAAATAATAAAGCCATGAACAATAGCCATAGAGCTGAGATATTAAATCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178273562 185 + 178775436 CAGACACTTCCTGAAC-GGGTAACTATGCTGTCA-TT-TCAAACACCCTCGTTAC---ATAAC-ACGAATGTCCCCC-GACTTCATCCAATCAC-AAGATttttgacataaaaatatttcccataaatataaaaattattgtctataaataataaaGCCAAGAACAATAGCCATAGAGCTGAGATATCAAATCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135216228 186 + 135778131 CAGACACTTCCTGAAT-GGGTAACTACGCTATCA-TT-TCAAACACCCTCATTAC---ATAAC-AAGAATGTCGCCCTGACTTCATCCAATCAC-AAGATTTTTGACATAAAAATATTTCCCATAAATATAAAAATTATTGTCTATAAATAATAAAGCCATGAACAATAGCCATAGAGCTGAGATATTAAATCT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190367382 178 - 190850796 TAGATGCTTCCAGAATGGGGTAACTACGTCATCATTT-TTAAGCATCCTACTTACATAATAAC-AAAAATGTCATCCTGACTTCATCCAATTAC-AAGACTTTTAATATAAAAATATTTCTCATGGGtataaaaattattgaatataaataataa-------------aGCCATTGAGCTAAGATATTAAATCT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87460305 184 - 129401213 CAGACATCTCCTGAATTAGTTAATAA--TTTTCA-TTATCAAATGTGATTGGCA----ATAACTAAAAAGACCAACCTGACATTTTCCAACTACAAAGAGATATGACATCAAAATATTTTTCATAAATATAGATATTCTTGAATAAAAATAGT---GTTGTGATTAACAGCCATGGAGCTGGGATATTATATTT
i mm10.chr8                I 6030 I 237
e canFam3.chr16             17795312   0 -  59632846 C

a score=3276.000000
s hg38.chr4_KI270925v1_alt     65459 1 +    555799 T
s panTro4.chr4             192764526 1 + 193495092 T
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197869192 1 + 198332218 T
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113635657 1 + 115148730 T
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183466172 1 + 184069350 T
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188845512 1 + 189454096 T
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178273747 1 + 178775436 T
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135216414 1 + 135778131 T
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190367560 1 - 190850796 T
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87460489 237 - 129401213 I
e canFam3.chr16             17795312 0 -  59632846 C

a score=797155.000000
s hg38.chr4_KI270925v1_alt     65460 439 +    555799 AAGAACAATagccataaaaaaggatgacttcatttcctttgtagaaacatggatgaagctggaaaccatcattctgagcaaactattgccaaggacagaaaaccaaacaccacatgttctcactcataggtggcaattgaacaatgagaacacatggacacagggt-ggggaacatcacacaccagggtttgttgtggggtggggggaggggggagggagagcattaggaaaaatacctaatg-taaatgatgagttaatgggtgcagcacaccaacatggcacatgtatacatttgtaacaagcctgcacgttgtgcacatgtaccctagaacttaaagtataataataataaaaaaaAA-----GAAaaagaaagaaagaagaaagaaagaagacagaaagaaagaaaggaagaaagaaagaaggaaagaaagagaaagaaaga
s panTro4.chr4             192764527 392 + 193495092 AAGAACAATagccataaaaaaggatgagttcatgtcctttgtagaaacatggatgaagctggaaaccatcattctgagcaaactattgccaaggacagaagaccaaacaccacatgttctcactcataggtgggaattgaacaatgagaacacatggacacagggt-ggggaacatcacacaccaggggctgttgtggggtggggggaacggggagggagagcattaggaaaaatacctaatg-taaatgatgagttaatgggtgcagcacaccaacatggcacatgtatacatttgtaacaagcctgcacgttgtgcacatgtaccctagaacttaaagtataataataat-aaaaaaaA-----GAAaaagaaagaaagaag--------------gaaagaaag--------------------------------agaaaga
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197869193 426 + 198332218 AAGAACAATagccataaaaaaggatgagttcatgtcctttgtagaaacatggatgaagctggaaaccatcattctgagcaaactattgccaaggacagaaaaccaaacaccacatgttctcactcataggtgggaattgaacaatgagaacacatggacacaggaa-ggggaacatcacacacccggggctgttgtggggtggggggaggggggagggagagcattaggaaaaatacctaatg-taaatgatgagttaatgggtgcagcacaccaacatgacacatgtatacatatgtaacaaacctgcatgttgtgcacatgtaccctagaacttaaagtataataataat-aaaaaaaA-----GAAaaagaaagaaagaga---gaaagaagaaagaaagaaag---------aagaaagaaagaaagaaagagaaagaaaga
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113635658 383 + 115148730 AAGAACAATagccataataaaggatgaattcatgtcctttgtaggaacatggacgaagctggaaaccatcattctgagcaaactatca-caaggatagaaaaccaaacaccgcatgttgtcactcataggtgggaattgaacaatgagaacacttggacacaggaa-ggggaacatcacacaccggggcctgtggtggggttgggggaggggggagggatagcattaggagatatacctaatgctaaatgacgagttaatgggtgcagcacagcaacatggcacattcatacatatgtaacaaacctgcactttgtgcacatgtaccctagaactgaaagtataataataat-aataaaaT-----Taaaaagaa-----------------------aaaagaaag--------------------------------gaaaaaa
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183466173 382 + 184069350 AAGAACAAGagccataaaaaaggatgagttcgtgtccttcgtagggacatggatgaagctggacaccatcattctcagcaaactatcg-caaggacagaaaaccaaacaccgcatgttctcactcataggtgggaactgaacaatgagatcactcggacacagggcgggggaacgtcacacaccggggcctgtcctggggtgggggaagggggcagggatagcattgggagatatacctaatg-taaatgacgagttaatcggtgtagcacaccaacatggcacatgtatacatatgtaacaaacctgcacgttgtgcacatgtacccttgaacttaaagtataataacaaT-AATAATAAATTTTAAAAAAGAAAGA-------------------------------------------------------------AAACAAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188845513 382 + 189454096 AAGAACAAGagccataaaaaaggatgagttcgtgtccttcgtagggacatggatgaagctggaaaccatcattctcagcaaactatcg-caaggacagaaaaccaaacaccgcatgttctcactcataggtgggaactgaacaatgagatcacttggacacagggtgggggaacgtcacacaccggggcctgtcctggggtgggggaagggggcagggatagcattgggagatatacctaatg-taaatgacgagtcaatgggtgtagcacaccaacatggcacatgtatacatatgtaacaaacctgcacgttgtgcacatgtacccttgaacttaaagtataataacaaT-AATAATAAATTTTAAAAAAGAAAGA-------------------------------------------------------------AAACAAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178273748 379 + 178775436 AAGAACaagagccataaaaaaggatgagttcgtgtccttcgtagggacatggaagaagctggaaaccatcattctcagcaaactatcg-caaggacagaaaaccaaacaccgcatgttctcactcataggtgggcattgaacaatgagaacacctggacacagggt-ggggaacgtcacacaccggggcctgtcgtggggtgggggaaggggggagggatagcattaggagaaatacctaatg-taaatgacgagttaatgggtgtagcacaccaacatggcacatgtatacata--taacaaacctgcacgttgtacacatgtacccttgaacttaaagtataataacaat-aataataaattttaaaaaagaaaga-------------------------------------------------------------aaacaaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135216415 381 + 135778131 AAGAACAAGagccataaaaaaggatgagtttgtgtcctttgtggggacatggatgaagctggcaaccatcattctcagcgaactatcg-caaggacagaaaaccaaacaccgcatgttctcactcataggtgggcattgaacaatgagatcacttggacgcagggt-tgggaacgtcacacaccggggcctgtcgtggggtgggggaaggggggagggatagcattaggagatatacctaatg-taaatgatgagttaatgggtgtagcacaccaacgtggcacatgtatacatatgtaacaaacctgcatgttgtacacatgtcccctagaacttaaagtgtaataataat-aataaaaATTTTTTAAAAAGAAAGA-------------------------------------------------------------AAACAAA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87460489 237 - 129401213 I
e canFam3.chr16             17795312   0 -  59632846 C
e calJac3.chr3             190367561   0 - 190850796 C

a score=160036.000000
s hg38.chr4_KI270925v1_alt     65899 61 +    555799 aagaaCAGTAGCCATGAAGCTAGGATATTAAATATGTGTCACATTTTATTAGTGAGGAAGG
s panTro4.chr4             192764919 61 + 193495092 aagaaCAGTAGCCATGAAGCTAGGATATTAAATATGTGTCACATTTTATTAGTAAGGAAGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197869619 61 + 198332218 aagaaCACTAGCCATGAAGCTAGGATATTAAATACATGTCACATTTTATTAGTGAGGAAGG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113636041 61 + 115148730 aagaacaaTAGTCGTGAAGCTAGGATATTAAATATGTGTCACATTTTATTAGTGAGGAAGG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183466555 59 + 184069350 AAGAACAATAGCCGTGAAGCTAGGATATTTAATA--TGTCACATTTTACTAGTGAGGAAGG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188845895 59 + 189454096 AAGAACAATAGCCGTGAAGCTAGGATATTTAATA--TGTCACATTTTACTAGTGAGGAAGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178274127 59 + 178775436 aagaacaatagCCATGAAGCTAGGATATTTAATA--TGTCACATTTTACTAGTGAGGAAGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135216796 59 + 135778131 AAGAACAATAGCCAAGAAGCTAGGATATTTAATA--TGCCACATTTTAATTGTGAGAAAGG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190367561 61 - 190850796 AAGTTCAGTAGCCATGAAGCCAGGATAGTGAATAAGCGTCACATTTCATCAGTGAGGAAGG
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87460489 237 - 129401213 I
e canFam3.chr16             17795312  0 -  59632846 C

a score=1585307.000000
s hg38.chr4_KI270925v1_alt     65960 537 +    555799  
s panTro4.chr4             192764980 537 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197869680 537 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113636102 535 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183466614 573 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188845954 567 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178274186 573 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135216855 572 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190367622 534 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87460726 523 - 129401213  
i mm10.chr8                I 237 C 0
e canFam3.chr16             17795312   0 -  59632846 C

a score=1013512.000000
s hg38.chr4_KI270925v1_alt     66497 321 +    555799 AGGCTTACAAGTGTTTTAGAATAAAAATATCATGATA-TTTTTCTTTTTTAAAAAATTCCAATTTAGCTACTTCACAGACAATGTTTTGTATATTCTACCA-TTTTCCTTAATTCCGATGATAGAAAAAGACAATGATTTCCCATCCCTCAAAGTTTCCAAAGAAAGGTGGAAACTTCCATTCTACTCCCAGTTGGGAAAAGTATAAAAGCAACGTCGTTAGTCCCCCTTTAAACCCTTCCACTGGCCCCAGGGAGACAGGAGTGACTATTAATTAGGGCCTTAGAAAAGAAACCCTCTGGGTTTAC---TTTTTTTTTTTTTT-----------AA
s panTro4.chr4             192765517 318 + 193495092 AGGCTTACAAGTGTTTTAGAATAAAAATATCATGATA-TTTTTCTTTTTT-AAAAATTCCAATTTAGCTACTTCACAGACAATATTTTGTATATTCTACCA-TTTTCCTTAATTCCGATGATAGAAAAAGACAATGATTTCCCATCCCTCAAAGTTTCCAAAGAAAGGTGAAAACTTCCATTCTACTCCCAGTTGGGAAAAGTATAAAAGCAACGTCGTTAGTCCCCCTTTAAACCCTTCCACTGGCCCCAAGGAGACAGGAACGACTATTAATCAGGGCCTTAGAAAAGAAACCCTCTGGGTTTAC-----TTTATTTTTTTT-----------AA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197870217 321 + 198332218 AGGCTTACAGGTGTTTTAGAATAACAATATCATGATT-TTTTTCTTTTTTAAAAAATTCCAATTTAGCTACTTCACAGACAATATTTTTTATATTCTGCCA-TTTTCCTCAATTCTGATGATAGAAAAAGACAATGATTTCCCATCCCTTAAAGTTTCCAAAGAAAGGTGAAAACTTCCATTCTACTCCCAGTTGGGAAAAGTATAAAAGCAACATCGTTAGTCCCCCTTTAAACCCCCCCACTGGCCCCAAGGAGACAAGAATGACTATTAATTAGGGCCTTAGAAAAGAAACCCTCTGGGTTTAC---TTTTTTTTTTTTTT-----------AA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113636637 321 + 115148730 AGGCTTAAAGATGTTTTAGAATAACAATATCATGATT-TTTTTCTTTTTTTAAAAATTCCAATTTAGCTACTTCACAGACAATATTTTGTATATTCATCCA-TTTTCCTCAATTCTGATGATAGAAAAAGACAGTGATTTCCCATCCCTTAAAGTTTCCAAAGAAAGGTGAAAACTTCCACTCCATTCCCAGTTGGGAAAAGTATAAAAGCAACATCGTTAGTCCCCCTTTAAACCCTTCCACTGTCCCCAAAGAGGCAGGAATGACTGTTAATTAGGGCCTTAGAAAAGAAACCCTCTGGGTTTAC--------------TTTAAAAAAAAAAAAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183467187 324 + 184069350 AGGTTTAAAGATGTTTTAGAATAACAATATCATGATT-TTTTTCTTTTTAAAAAAATTTCAATTTAGCTACTTTGCAGACAATATTCTGTGTATTCTACCA-TTTTCCTCAATTCCAATGATAGAAAAAGACAATGATTTCCCATCCCTTAAAGTTTCCAAAGAAAGGTAAAAACTTCCACTCCGCTCCCAGTTGGGAAAATTATAAAAGCAACGTCGTTAGTCCCCCTTTAAACCCTTCTGCTGTCCCCAAGGAGGCAGGAACGACTGTTAATTCGGGCCTTAGGAAAGAAACACTCTGGGTTTACTTTTTTTTTTTTTTTTT-----------AA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188846521 323 + 189454096 AGGTTTAAAGATGTTTTAGAATAACAATGTCATGATT-TTTTTCTTTTTAAAAAAATTTCAATTTAGCTACTTTGCAGACAATATTCTGTGTATTCTACCA-TTTTCCTCAATTCCAATGATAGAAAAAGACAATGATTTCCCATCCCTTAAAGTTTCCAAAGAAAGGTAAAAACTTCCACTCCGCTCCCAGTTGGGAAAATTATAAAAGCAACGTCGTTAGTCCCCTTTTAAACCCTTCTGCTGTCCCCAAGGAGGCAGGAACGACTGTTAATTCGGGCCTTAGGAAAGAAACCCTCTGGGTTTAC-TTTTTTTTTTTTTTTT-----------AA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178274759 319 + 178775436 AGGTTTAAAGATGTTTTAGAATAACAgtatcatgatt-tttttctttttaaaaaaatttcaatttagcTACTTTGCAGACAATATTCTGTGTATTCTACCA-TTTTCCTCAATTCCAATGATAGAAAAAGACAATGATTTCCCATCCCTTAAAGTTTCCAAAGAAAGGTGAAAACTTCCACTCCGCTCCCAGTTGGGAAAATTATAAAAGCGACGTCGTCAGTCCCCCTTTAAACCCTTCTGCTGTCCCCAAGGAGGCAGGAACGACTGTTAATTAGGGCCTTAGAAGAGAAACCCTctgggtttac-----tttttttttttt-----------aa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135217427 320 + 135778131 A-GTTTAAAGATGTTTTAGAATAACAAT-TCATGACT-TTTTTCTTTTTTAAAAAATTTCAATTTAGCTACTTTGCAGACAATATTTTGTGTATTCTACCA-TTTTCCTCAATTCCAATGATAGAAAAAGACAATGATTTCCCATCCCTCAAAGTTTCCAAAGAAAGACGAAAACTTCCACTCCGCTCCCAGTTGGGAAAATTATAAAAGCAACATCGTTAGTCCCCCTTTAAACCCTTCTGCTGTCCCCAAGGAGGCAGGAACGACTGTTAATTAGGGCCTTAGAAAAGAAACGCTCTGGGTTTAC--TTTTCTTTTTATTTT-----------AA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190368156 319 - 190850796 AGACTTGAAGATGTTTTAGAACAACAATATCATGACTGTTTGTCTTTTCTTAAAAATCCCAATTTAGCTACTTCACAGACAATAGTTGGCATAATCTACCA-TTTTCCTCAATTCCAATGATAGGAAAAGACAATGATTTCCCATCCCTTAAAGTTTCCAAAGAAACGTGAAAACTTCCACTCCTCTCCCAGTTGGGAAAACTATGAAAGCAATGTAGTT-GTCTCTCTTTAAACCCTTCTGCTGTCCCCAAGGAGGCAGGAAGGACTGTTAATTAGAGGTTTAGAAAAGAAACCCTCTGGGTTTAC-----TTTTTTTATTGA-----------AA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87461249 286 - 129401213 AGGTTTGAAGACATTTTAAAATAACCATATCAGTATT-TTTCTTCGGGTT----GATACTTACCTAGCTAATTC-------ATGGCTTCTGTATTGTTTCA-CTTTATTCACCCCAAGTACAAGAGGATGGCAATGATTTTTAAACCTTCAAAGTTCCCAAAG-----TGGAGATTTCCA-TCTACTTTGGGTGGAGAAAAGTCTGTGAACAATGCTGCCCGTTGCTCTGTGGAGCCTTGT-TTTCCTCCAAGAAAGGAGGAA--------------GTCTGTATGGATGGATTCCTCTAA---TGC---TCTGTTTTTGTTTT-----------AA
i mm10.chr8                C 0 I 418
s canFam3.chr16             17795312 282 -  59632846 AGGTTTGAAGACattttataataaatgtaataaaatt-attttCCTTTCT-CTTTATCCCAATTTGGCTTATTCATGAACAATATTGTGTATATTCTACTACTTTTCCTCAATTCTAATGATAGGA----ACAATGATTTCCACCTTCTCAGTGTTTCCCAAGAAGAGTGAAAACTTC------ACTCCCAGTTAAGAAAAGTGTGA----AACATTGCTGATCTCTTT-------------------CCAAGGAAGCAGAAATGCCTACTAAGTAGGCAACTAGAAAAGAAA----CTAAGTTCTG-----TCTTTGTTTTCT-----------CA
i canFam3.chr16            C 0 C 0

a score=299551.000000
s hg38.chr4_KI270925v1_alt     66818 109 +    555799 GATCATCTTGTTGAAAACACAGC-------------------------TGAGAA------------------------------CTTCT---------GCACCACTGCTAATTGATCAGTATG-TAGAGATTTTTTTTTT-TGTTCATCTGTGTGATTTATCTTTCTTCCTTCTC
s panTro4.chr4             192765835 106 + 193495092 GATCATCTTGTTGAAAACACAGC-------------------------TGAGAA------------------------------CTTCT---------GCACCACTGCTAATTGATCAGTATG-TAGAGA---TATTTTT-TGTTCATCTGTATGATTTATCCTTCTTCCTTCTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197870538 106 + 198332218 GATCATCTTGTTCAAAAGACAGC-------------------------TGAGAA------------------------------CTTCT---------GCACCACTGCTAATTGATCAGCAGG-TAGAGA---TTTTTTT-TGTTCATCTGTATGATTTATCCTTCTTCCTTCTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113636958 106 + 115148730 GATCATCTTGTTCAAAAGACAGC-------------------------TGAGAA------------------------------CTTCT---------GTGCCACTGCTAATTGATCAGCATT-TAGAGA---TTTTTTT-TGTTCATCTGTATGATTTATCCTTCTTCCTTCTC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183467511 107 + 184069350 GATCTTCTTGTTCAACAGAGAGC-------------------------TGAGAA------------------------------CTTCT---------GCACCACCGCTAACTGACCAGCATG-TAGAGA---TATTTTTATGTTCATCTGTATGATTTATCCCTCTTCCTTCTC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188846844 107 + 189454096 GATCTTCTTGTTCAACAGAGAGC-------------------------TGAGAA------------------------------CTTCC---------GCACCACCGCTAACTGACCAGCATG-TAGAGA---TATTTTTATGTTCATCTGTGTGATTTATCCCTCTTCCTTCTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178275078 107 + 178775436 gatcttcTTGTTCACCAGAGAGC-------------------------TGAGAA------------------------------CTTCC---------GCACCACCGCTAACTGACCAGCATG-TAGAGA---TATTTTTATGTTCATCTGTATGATTtatccctcttccttctc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135217747 107 + 135778131 GATCTTCTTGTTCAACAGAGAGC-------------------------TGAGAA------------------------------CTTCC---------GCACCACTGCTAACTGACCAGCATG-TAGAGA---TATTTTTATGTTCATCTGTATGATTTATCCCTCTTTCTTCTC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190368475 107 - 190850796 GTTCATCTTGTTCAAAAGAGAGC-------------------------TGAGAA------------------------------GGTCT---------ATGCCACCGCTAATCAATCAGCATG-TGGAGA---CATTTTTATCTTCATCTGTATGATTTTTCCTTGTTTCTTCTC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17795594 172 -  59632846 AATCATCTTGTTCTTGGGAGAGTCTAGACTTGTGTTCTTGCTGCCATATGAGAAAAGCATGCATGGCCCCTGGGCCAAGTATATCTTCTTAAATGTAGTCACCAGTGCAGATCAATCAGTATGTTAGAGA---TATTTTGATTTCCATCTACATAATTCATCCTTCCTCTTCCTC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87461535 418 - 129401213 I

a score=327916.000000
s hg38.chr4_KI270925v1_alt     66927 82 +    555799 --CTTTTATCTCAAATTTCA-AATGGTTTAGAATTGGGAGATACACAGATTAGAAGACAGCAAATTCAATCACAAATTTACAAGG
s panTro4.chr4             192765941 82 + 193495092 --CTTTTATCTCAAATTTCA-AATGGTTTAGAATTGGGAGATACACAGATTAGAAGACAGCAAATTCAATCACAAATTTACAAGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197870644 82 + 198332218 --CTTTTATCTCAAATTTCA-AATGGTTTAGAATTGGGAGATACACAGATTAGAAGACAGCAAATTCAATCACAAATTTACAAGG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113637064 82 + 115148730 --CTTTTCTCTCAAATTTCA-AATGGTTTAGAATTCGGAGATACACAGATTAGAAGATAGCAAATTCAATCACAAATTTACAAGT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183467618 82 + 184069350 --CTTTTCTCTCAAATTTCA-AATGGTTTAGAACTGGGAGATACACAGATCAGAAGACAGCAAATTCAATCACAAATTTACAAGG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188846951 82 + 189454096 --CTTTTCTCTCAAATTTCA-AATGGTTTAGAACTGGGAGATACACAGATCAGAAGACAGCAAATTCAATCACAAATTTACAAGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178275185 82 + 178775436 --cttttctctcaaaTTTCA-AATGGTTTAGAATTGGGAGATACACAGATCAGAAGACAGCAAATTCAATCACAAATTTACAAGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135217854 82 + 135778131 --CTTTTCTCTCAAATTTCA-AATGGCTTAGAATTGGGAGATACACAGATCAGAAGACAGCAAATTCAATCACAAATTTACAAGG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190368582 82 - 190850796 --CTTTTCTCTCAGATTTCA-AATGGTTTAGAATTTGGAGATATACAGATTAGAAGACAGCAAGTTCAATCACAAGTTTACAAGG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87461953 83 - 129401213 --CTTTTTTCTCAATTTTCATTATTGTTTAGAATTTGGAATCATAGGAATTAGAACACTTCAATTTGGATCATAAATTTATAATG
i mm10.chr8                I 418 I 200
s canFam3.chr16             17795766 84 -  59632846 TTGTTTTCTTTCAAATTTCA-AATAATTTAGTATTTGGAGATATACAAATTATGACATAGTACATTTAATAACACCTTTCCAAGG
i canFam3.chr16            C 0 C 0

a score=1434837.000000
s hg38.chr4_KI270925v1_alt     67009 493 +    555799  
s panTro4.chr4             192766023 493 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197870726 498 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113637146 498 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183467700 502 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188847033 502 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178275267 503 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135217936 501 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190368664 490 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87462236 490 - 129401213  
i mm10.chr8                I 200 I 161
s canFam3.chr16             17795850 426 -  59632846  
i canFam3.chr16            C 0 C 0

a score=2385822.000000
s hg38.chr4_KI270925v1_alt     67502 699 +    555799  
s panTro4.chr4             192766516 708 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197871224 705 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113637644 709 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183468202 710 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188847535 710 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178275770 705 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135218437 712 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190369154 712 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87462887 736 - 129401213  
i mm10.chr8                I 161 I 2961
s canFam3.chr16             17796276 732 -  59632846  
i canFam3.chr16            C 0 C 0

a score=843242.000000
s hg38.chr4_KI270925v1_alt     68201 385 +    555799 ATCCAAAATAGTTATTTTAGGCCGACA-----------------------ATAAAGCAAAATGCAACCAGGAGTTCACAGCTGTATAATCTGCTCATTGAGCATTTTggttccaaaatcagattgatgagattggagtccatgctctggcacatgctcagctctgagtctttgggcaaatcacttaatcactctgcctccattttctcatctttaacgttaaagatga--gaaataatagtttctatt------atta-------------tttctattaatagttgtctattaatag----------------AAAT------------------------------------AATAGTCAAaataatagtttttacttcacaggttacagtgaagatcagctgatgcagatactgatctgagaacagtacctggtgcatattatgtcctcaataaatgAAACATTCGTAATATTTTTGG
s panTro4.chr4             192767224 385 + 193495092 ATCCAAAATAGTTATTTTAGGCTGACA-----------------------ATGAAGCAAAATGCAACCAGGAGTTCACAGCTgtataatctgctcattgagcgttttgattccaaaatcagattgatgagattggagtccaagctctggcacatgctcagctctgagtctttgggcaaattacttaatcactctgcctccgttttctcatctttaaagttaaagatga--gaaataatagtttctaTT------ATTA-------------TTTCTATTAATAGTTGACTATTAATAG----------------AAAT------------------------------------aatagtcaaaataatagtttttacttcacaggttacggtgaagatcagctgatgcagatactgatctgagaacagtacctggtgcatattatgtcctcaataaatgAAACATTCGTAATATTTTTGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197871929 320 + 198332218 ATCCAAAATAGTTATTTTAGGCTGAAA-----------------------ATAAAGCAAAATGCAACCTGGAGTTCACAGCTGTATAATCTTACCATTGAGCGTTTTggttccaaaatcagattgatgagattggagtccatgctctggcacatgctcagctctgagtctttgggaaaattacttaatcactctgcctccattttctcatctttaac------------------------------------------------------------------------------------------------------------------------------------------atggtcaaaataatagtttttacttcacaggttatggtgaagatcagctgatgcagatattgatctgagaacagtacctggtgcatattatgtcctcagtaaatgAAACATTTGTAATATTTTTGG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113638353 314 + 115148730 ATCCAAAATAGTTATTTTAGGCTGAAA-----------------------ATAAAGCAAAAAGCAACCAGGAGTTCATAGCTGTATAATCTGCTCATTGAGGGTTTTAGTtccaaaatcagatcgatgagattggagtccatgctctggcacatgctcagctctgagtctttgggcaaattacttaatcgctgtgcctcagttttctcatctttaac------------------------------------------------------------------------------------------------------------------------------------------atggtcaaaataatagtttttacttcacaggttaccgtgaagataagataatgca------gatctgaaaatagtacctggtgcatattatgtcctcagtaaatgAAACATGCGTAACATTGTTGG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183468912 300 + 184069350 ATCCAAAATAGTTATTTTAGGCTGAAA-----------------------ATAAAGCAAAAAGCAACAAGGAGCTCACAGCTGTATAATTTGCCCCttaagggttttggttccaaaatcagatcaatgaggctggagtc------------cgtgctcagctctgagtctttgggcaaatt--------actctgcctccgtcttctcatctttaac------------------------------------------------------------------------------------------------------------------------------------------ctggtcagaataatggtttttacttcacaggttacggtgaagatcagctgatgcagctggtgatctgagaacagtacctggtgcgtatgatgtcctcagtacatgAAACATTCGTAATATTGTTGG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188848245 300 + 189454096 ATCCAAAATAGTTATTTTAGGCTGAAA-----------------------ATAAAGCAAAAAGCAACAAGGAGCTCACAGCTGTATAATTTGCCCCTTAAGGGTTTTGGTTCCAAAATCAGATCAATGAGGCTGGAGTC------------CGTGCTCagctctgagtctttgggcaaatt--------actctgcctccgtcttctcatctttaac------------------------------------------------------------------------------------------------------------------------------------------ctggtcagaataatggtttttacttcacaggttacggtgaagatcagctgatgcagctggtgatctgagaacagtacctggtgcgtatgatgtcctcagtacatgAAACATTCGTAATATTGTTGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178276475 308 + 178775436 ATCCAAAATAGTTATTTTAGgctgaaa-----------------------ataaagcaaaaagcaaCAAGGAGCTCACAGCTGTATAATCTGCCCCTTAAGGGTTTTGGTTCCAAAATCAGATCAATGAGGCTGGAGTC------------CGTGCTCAGCTCTGAgtctttgggcaaattacttcatCACTCTGCCTCCGTCTTCTCATCTTTAAC------------------------------------------------------------------------------------------------------------------------------------------ATGGTCAGAATAATGGTTTTTACTTCACAGGTTACGGTGAAGATCAGCTGATGCAGCCGGTGATCTGAGAACAGTACCTGGTGCGTATGATGTCCTCAGTACATGAAACATTCGTAATATTGTTGg
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135219149 308 + 135778131 ATCCAAAATAGTTATTTTAGGCTGAAA-----------------------ATAAAGCAAAAAGCAACAAGGAGCTCACAGCTGTATAATCTGCCCCttaagggttttggttccaaaatcagatcgatgaggctggagtc------------cgtgctcagctctgagtctttgggcaaattacttcatcactctgcctctgtcttctcatctttaac------------------------------------------------------------------------------------------------------------------------------------------atggtcagaataatggtttttacttcacaggttacggtgaagatcaactgatgcagctggtgatctgagaatagtacctggtgcgtatgatgtcctcagcacatgAAACATTCGTAATATTGTTGG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190369866 450 - 190850796 ACCCAAAATTGTTATTTTAGGCCGAAA-----------------------ATAAAGCAAAAAGCCACAAGGACTTCACAACTGTATGATCTGTTCATTGAGGG-TTTggttccaaaatccggtagattagatcggagtccgtgctctggcacatactcagctctgagtctttgggcaaattacttaatcactctgcctcggttttctcatctttcac-------atggttgggataatagttttcatttcccaggttacgaggaaggtcagtggatgtggatactaatctgaaaatagtacctggTctttgggcaaattacttaatcactctgcctcggttttctcatctttcacatggttgggataatagttttcatttcccaggctatgaggaaggtcagtggatgtggacactgatctgaaaatactacctggtgcatattatatcctcagtaaatgAAACATTCGTAATATTGTTGG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17797008 333 -  59632846 ACTCACAATAATTGTTTTAAGCTAACATCCCcacacacacacacacacacacacaAGAAGAGGTAA-AAGGATGCCAAAGATGAATAACTTGCTTTTTGAGGGTTTCAGCTCTACCATCAA---GATCggattggaatccctactctga--cttgcatagctgtaaatctttagacaagttattg----gctctgcctcagtttgcttatctgtgaa------------------------------------------------------------------------------------------------------------------------------------------gtggttaaaataagagtacttacctcaccagttactctgaagatcagtccctgagggtaatgacctgagaatagtccctggcacatattaagccttcagtaaatatagtattatAAATATTTTTGG
i canFam3.chr16            C 0 I 16
e mm10.chr8                 87463623 2961 - 129401213 I

a score=1984100.000000
s hg38.chr4_KI270925v1_alt     68586 717 +    555799  
s panTro4.chr4             192767609 718 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197872249 718 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113638667 718 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183469212 750 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188848545 750 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178276783 749 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135219457 750 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190370316 694 - 190850796  
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87463623 2961 - 129401213 I
e canFam3.chr16             17797341  16 -  59632846 I

a score=13716.000000
s hg38.chr4_KI270925v1_alt     69303 16 +    555799 caGTGTT-----------------------------------------------------------AACAGTAAA
s panTro4.chr4             192768327 16 + 193495092 caGTGTT-----------------------------------------------------------AACAGTAAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197872967 16 + 198332218 caGTATT-----------------------------------------------------------AACAGTAAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113639385 16 + 115148730 caGTGTT-----------------------------------------------------------AACAGTAAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183469962 60 + 184069350 caGTGTTAACAGTGAAT-------TCACTACGAAGAACCCGCAGGTGGTTAC--------GGTGTTAACAGTGAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188849295 60 + 189454096 caGTGTT-------AACAGTGAATTCACTACGAAGAACCCGCAGGTGGTTAC--------GGTGTTAACAGTGAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178277532 16 + 178775436 CAGTGTT-----------------------------------------------------------AACAGTGAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135220207 68 + 135778131 cGGTGTT-------AACAGTGAATTCACTACGAAGAACCCGCAGGTGGTCACGGTGTTAAGGTGTTAACAGTGAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190371010 16 - 190850796 caGTGTT-----------------------------------------------------------AACAGCAAA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87466584 16 - 129401213 CAGTATT-----------------------------------------------------------ACTGATAGG
i mm10.chr8                I 2961 C 0
e canFam3.chr16             17797341 16 -  59632846 I

a score=963637.000000
s hg38.chr4_KI270925v1_alt     69319 272 +    555799 TTCACTGTACCTCTTGCTTAACTACAGAAGCAACAGAAGAGAAAAATACAGTTTTGTCTACATTCAACTTTGCTTAAGATGCAATGGAACCCATCATTTAGAATTGCAGCTCATTATAAATATTAAATAAACAAATTTATTAACTCTTAAGGGTTTAAGACCCTGCAGTCAAACAGGTCAAGCAGGAT--CTTGAAAGTATTTAAATGTTCTTGTTTTTAGCCATTATTTTCTCTAATAATGCAGTCAACTAGGCATCATTTTTAAACTACAAA
s panTro4.chr4             192768343 272 + 193495092 TTCACTGTACCTCTTGCTTAACTACAGAAGCAACAGAAGAGAAAAACACAGTTTTGTCTACATTCAACTTTGGTTAAGATGCAACGGAACCCATCATTTAGAATTGCAGCTCATTATAAATATTAAATAAACGAATTTATTAACTCTTAAGGGTTTAAGACCCTGCAGTCAAACAGGTCAAGCAGGAT--CTTGAAAGTATTTAAATGTTCTTGTTTTTAGCCATTATTTTCTCTAATAATGCAGTCAAGTAGGCATCATTTTTAAACTACAAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197872983 271 + 198332218 TTCACTGTACCTCTTGCTTAACTACAGAAGCAACAGAAGAGAAAAATAC-GTTTTGTCTACATGCAACTTTGGTTAAGATGCAATGGAATCCATCATTTAGAATTGCAGCTCattataaatattaaataaacaaatttattaaCTCTTAATTGTTTAAGACCCTGCGGTCAAACAGGTCAAGCAGGAT--CTTGAAAGTACTTAAACGTTCTTGTTTTTAGCCATTATTTTCTCTAATAATGCAGTCAAGGAGACATCATTTTTAAACCACAAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113639401 272 + 115148730 TTCACTGTACCTCTTGCTTAACTACAGAAGCAACAGAAGAGAAAAATATAGTTTTGTCTACATTCAACTTTGGTTAAGATGCAATGGAACCCATCATTTAGAATTGCAGCTCATTATAAATATTAAATGAACGAATTTATTAACTCTTAAGTGTTTAAGACCCTGCAGTCAAACAGATCAAGCAGGAT--CTTGAAAGTATTTAAATGTTCTTGTTTTTAGCCATTATTTTCTCTAATAATGCAGTCAAGGAGGCATCATTTTTAAACCACAAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183470022 272 + 184069350 TTCACTGAAACTCTTGCTTAACTACAGAAGCAACAAAAGAGAAAAATACAGTTTTGTCTACATTCAACTTTGGTTAAGGTGCAATGGAACCCATCATTTAGAATTGCAGCTCACtataaatattaaataaactaatttattaaCTCTTAAGTGTTTAAGACCCTGCAGTCAAACAGGTCAAGCAGGAT--CTTGCAAGTATTTAAAAGTTCTTGTTTTTAGCCATTATTTTCTCTGATAATGCAGTCAAGGAGGCATCATTTTTAAACCACAAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188849355 272 + 189454096 TTCACTGAAACTCTTGCTTAACTACAGAAGCAACAAAAGAGAAAAATACAGTTTTGTCTACATTCAACTTTGGTTAAGGTGCAATGGAACCCATCATTTAGAATTGCAGCTCACTATAAATATTAAATAAACTAATTTATTAACTCTTAAGTGTTTAAGACCCTGCAGTCAAACAGGTCAAGCAGGAT--CTTGCAAGTATTTAAAAGTTCTTGTTTTTAGCCATTATTTTCTCTGATAATGCAGTCAAGGAGGCATCATTTTTAAACCACAAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178277548 272 + 178775436 TTCACTGAAACTCTTGCTTAACTACAGaagcaacaaaagagaaaaatgcagtTTTGTCTACATTCAACTTTGGTTAAGGTGCAATGGAACCCATCATTTAGAATTGCAGCTcactataaatattaaataaactaaTTTATTAACTCTTAAGTGTTTAAGACCCTGCAGTCAAACAGGTCAAGCAGGAT--CTTGCAAGTATTTAAAAGTTCttgtttttagccattattttctCTGATAATGCAGTCAAGGAGGCATCATTTTTAAACCACAAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135220275 272 + 135778131 TTAACTGAACCTCTTGCTTAACTACAGAAGCAACAAAAGAGAAAAATACAGTTTTGTCTACATTCAACTTTGGTTAAGGTGCAATGGAACTGATCATTTAGAATTGCAGCTCACTATAAATATTAAATAAACTAATTTATTAACTCTTAAGTGTTTAAGACCCTGCAGTCAAACAGGTCAAGCAGGAT--CTTGCAAGTATTTAAAAGTTCTTGTCTTTAGCCATTATTTTCTCTGATAATGCAGTCAAGGAGGCATCATTTTTAAACCACAAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190371026 274 - 190850796 TTCACTGTAACGCTTGCTTAGCTACAGAAGCAACTAAAGAGTAAAGTACAGTTTTGTCTGCATTCAACTTTGGTTGAGAGGCAATGGAACCCGGCATTTGGAATTGCAGCCCCTTATGACTATTAAATAAACTAATTTATTAATTCTTAAGCATTTAAGAACCTGCAGACAAACAGGTCAAGCAGAATCACTTGAAAATATTTAAATGCTCTGGTTTTTAGCCATTATTTTCTCTAACAATGCAGTCAAGGGGACATCATTTTTAAACGACAAG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87466600 263 - 129401213 CTTACTAGAATGCTTACTTAGCTAGAGATGCAACAA---GGAAGAATATGTTTTTGTCTGTGCTCAACTCTGGGTAATTGGAAACGGGGCTTTTCATTTAATATTACAGGTAGTAGAGAATATTACACAGAGTAACTT----AAGCTTATCTGCATAAT-TCCTTCAGTCAAACACATAAAATGAAAT--CTTGATTCTATTTAAATGAGC-AGAGTACAGCCATTATAGCCTTTGATAAGATGATCAAAATGTCTTTGTGTTAAAACTACAAA
i mm10.chr8                C 0 C 0
s canFam3.chr16             17797357 251 -  59632846 TTCCCTGTACTGCTTGCTTAGCTAAAGAAGAAACAAAAGATTA-AATGTCATTTTCTCTATATTCAACTCTGGTTAATATGGAACAGAACCCATCATTTACAGTTGTATGTAGTAGGCAGTATTAAATAAA-TAACTTGCTAATTCT---GTGTGT---------CAATCAGACATGTCAAGTGTGAT--CTTGATCATATTGAAACACTCTTATTTTTAACTATTATTTCCTTTAATACTGTGATCAAGGAGGCATCGTTTACAAA-------
i canFam3.chr16            I 16 C 0

a score=46848.000000
s hg38.chr4_KI270925v1_alt     69591 14 +    555799 AAGTTTGAATCAAA
s panTro4.chr4             192768615 14 + 193495092 AAGTTTGAATCAAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197873254 14 + 198332218 AAGTTTGAATCAAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113639673 14 + 115148730 AAGTTTGAATCAAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183470294 14 + 184069350 ATGTTTGAATCAAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188849627 14 + 189454096 ATGTTTGAATCAAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178277820 14 + 178775436 ATGTTTGAATCAAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135220547 14 + 135778131 ATGTTTGAATCAAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190371300 14 - 190850796 AAGTTTGAATCAAA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87466863 14 - 129401213 GAATTTAAAATAAA
i mm10.chr8                C 0 I 9
e canFam3.chr16             17797608  0 -  59632846 C

a score=295232.000000
s hg38.chr4_KI270925v1_alt     69605 129 +    555799 AGAGCCTGTTTATGt--tttgttttgt----ttttttttttttgagacagggtctcgctctctggctcaggatggagtaaagtggagtgatcttggctcattgcaaattccaccttccgagttcaagggattctc
s panTro4.chr4             192768629 133 + 193495092 AGAGCCtgtttatgt--tttgttttgttttgttttgtttttttgagacagggtctcgctctctggctcaggttggagtaaagtggagtgatcttggctcattgcaaactccaccttccgagttcaagggattctc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197873268 128 + 198332218 AGAGCCTGTttttgt--tttgttttg-----ttttgtttttttgagacagggtcttgctctctggctcaggttggagttaagtggaatgatcttggctcattgcaaactccgccttctgggttcaaaggattctc
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113639687 125 + 115148730 AGATCCTGtttttgt--tttgttttg-----ttttg-tttttggagacagactcttgctctctggctcaggttggagtaaagtggagtgatctcggctcattgcaaact--gccttcccagttcaagggattctc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183470308 118 + 184069350 AGAGTCTGt-----t--tttgttttg-----ttttg-----ttgagacagggtctcgctctctggctcaggttggagtacaatggagtaatctcagctcattgcaaactctgccttctgggttcaagggattctc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188849641 118 + 189454096 AGAGTCTGt-----t--tttgttttg-----ttttg-----ttgagacagggtctcgctctctggctcaggttggagtacaatggagtaatctcagctcattgcaaactctgccttctgggttcaagggattctc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178277834 116 + 178775436 agagtctgt-----t--tttgttttg-----ttttg-----ttgagacagggtctcgctctctgGCTCAGGTTGGAG--CAATGgagtaatctcagctcattgcaaactctgccttctgggttcaagggattctc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135220561 122 + 135778131 AGAGTCTGtttttgt--tttgttttg-----ttttg-----ttgacacagtgtctcgctctctggcttaggtc-gagtacagtggagtaatctcggctcattgcaaactctgccttctgggttcgagggattctc
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190371314 127 - 190850796 AGAGCCTGtttttattgtttgtttca-----ttatg---ttttgagtcagggccttgctctgtggctcaggttggagtgcagtgaaatgaactcagctcattgcaaactccgcctccgaggttaaagggattttc
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87466877   9 - 129401213 I
e canFam3.chr16             17797608   0 -  59632846 C

a score=86021.000000
s hg38.chr4_KI270925v1_alt     69734 30 +    555799 ctacatcaccctcctgagaagctgggatta
s panTro4.chr4             192768762 30 + 193495092 ctacatcaccctcctgagaagctgggatta
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197873396 30 + 198332218 ctacatgaccctcctgagaagctgggatta
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113639812 30 + 115148730 ctacctcagcctcctgagaagctgggatta
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183470426 30 + 184069350 ctacttcagcctcctgagtagctgggatta
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188849759 30 + 189454096 ctacttcagcctcctgagtagctgggatta
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178277950 30 + 178775436 ctacttcagcctcctgagtagctgggatta
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135220683 30 + 135778131 ctacctcagcctcctgagtggctgagatta
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190371441 30 - 190850796 ccaccttagcctcctgagtagctgggacta
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17797608 22 -  59632846 CCACACCA--------AGAAGCTTAAATCA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87466877  9 - 129401213 I

a score=442498.000000
s hg38.chr4_KI270925v1_alt     69764 155 +    555799 caggcctgcac--------------------------------caccatgacagactaattttggtattttagtacagatgggctttccccatgttggcccaggctagtctcgaactcctgaccttaagtgatctgcccactttcgcctcccaaagtgcttggattaccggtgtgagccattgcCTA
s panTro4.chr4             192768792 155 + 193495092 caggcctgcac--------------------------------caccatgacagactaattttggtattttagtagagatgggctttccccatgttggcccaggctagtctcgaactcctgaccttaagtgatctgcccacttttgcctcccaaagtgcttggattacaggtgtgagccattgcCTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197873426 154 + 198332218 caggcctgcac--------------------------------caccatggcaggctaatttttgtattttagtagagatgggcattccccatgttgg-ccaggctagtctcgaactcctgaccttaagtgatctgcccacttttgcctcccaaagtgcttggattacaggtgtgagccattgcCTA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113639842 186 + 115148730 caggcctgcaccaccatgagaagctgggattacaggcctgcatcaccatgacaggctaatttttgtattttagtagagatgggctttccccatgttgg-ccaggccagtctagaactcctgaccttaagtgatctgcccacttttgcctcccaaagtgcttggattataggtgtgagccattgcCTA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183470456 153 + 184069350 cagacctgcac--------------------------------caccacgacaggctaatttttgtattttaata-agataggctttccccatgttgg-ccaggctggtctcgaacccctgaccttaagtgatctgcccactttcgcctcccagagtgcttggattacaggcgtgagccattgcTTA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188849789 153 + 189454096 cagacttgcac--------------------------------caccacgacaggctaatttttgtattttaata-agataggctttccccatgttgg-ccaggctggtctcgaacccctgaccttaagtgatctgcccactttcgcctcccagagtgcttggattacaggcgtgagccattgcTTA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178277980 154 + 178775436 cagacctgcac--------------------------------caccacgacaggctaatttttgtattttaatagagatgggctttccccatgttgg-ccaggctggtctcaaacccctgaccttaagtgatctgcccactttcgcctcccagagtgcttggattacaggcgtgagccattgcttA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135220713 154 + 135778131 cagacctgcac--------------------------------caccacgacaggctaatttttgtattttaatagagatgggttttccccatgttgg-ccaggctagtctcgaacccctgaccttaagtgatctgcccactgtcgcctcccagagtgcttggattacaggcgtgagccattgcTTA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190371471 154 - 190850796 caggcctgcac--------------------------------caccctgccagggtcatttttgtattttagtagagataaggtttccccatgttgg-ccaggctagtcttgaactcctgaccacaagtgatctgcccacctcagcctcccaaagtgcttggactacaggtgtaagccattgcCTA
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87466877   9 - 129401213 I
e canFam3.chr16             17797630   0 -  59632846 C

a score=33091.000000
s hg38.chr4_KI270925v1_alt     69919 10 +    555799 AAACAGCCTG
s panTro4.chr4             192768947 10 + 193495092 AAACAGCCTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197873580 10 + 198332218 AAACAGCCTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113640028 10 + 115148730 AAACAGCCTG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183470609 10 + 184069350 AAACAGCCTG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188849942 10 + 189454096 AAACAGCCTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178278134 10 + 178775436 AAACAGCCTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135220867 10 + 135778131 CAACAGCCTG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190371625  9 - 190850796 -AACAGCCTG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17797630 10 -  59632846 AAAGACCTTG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87466877  9 - 129401213 I

a score=1411210.000000
s hg38.chr4_KI270925v1_alt     69929 389 +    555799 TTTTTCGAAGTACATTTATTCTCCTTGT--GCCTGTCCCAGAGCACAGGTTTCGCTGCTTGGCCTTAATGTAATTTCTCTTTTGAGCATTTCCGTGTACACTTTGACTGTGGCCTTCATCCCTCGTCAGGTTTGCAACTGCAATTTTCACTAATCCCCGTGAGCACTTTCCC-TCACAAGGAAC-----AGAGAGCCCAGGCTGTTAACCTAGTCGAGGAGACTGGACCACATGT------TAGA------------TATCACAGGCCTTTGATTCCAAGCAATACTTTTCAGTTGACAGTTCACTGAGAATTTAATACATATTTAACAAAGATCATAGAGAGATGTTTATCCTGGTTGCCCCCCAGAAA--GAGTCCCTACATCAGAAATTCCGGCTGATTTCAGAGACGTCTGTA
s panTro4.chr4             192768957 388 + 193495092 TTTTTCAAAGTACATTTATTCTCTTTGT--GCCTGTCCCAGAGCACAGGTTTCGCTGCTTGGCCTTAATGTAATTTCTCTTTTGAGCATTTCCATGTACACTTTGACTGTGGCCTTCATCCCTCGTCAGGTTTGCAAC-GCAATTTTCACTAATCCGCGTGGGCACTTTCCC-TCACAAGGAAC-----AGAGAGCCCAGGCTGTTAACCTAGTCGAGGGGACTGGACCACATGT------TAGA------------TATCACAGGCCTTTGATTCCAAGCAATACTTTTCAGTTGACAGCTCACTGAGAATTTAATACATATTTAACAAAGATCATAGAGAGATGTTTACCCTGGTTGCCCCCCAGAAA--GAGTCCCTACATCAGAAATTCCGGCTGATTTCAGAGACGTCTGTA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197873590 389 + 198332218 TTTTTCAAAGTACATTTATTCTCTTTGT--GCCTGTCCCAGAGCACAAGTTTTGCTGCTTGGCCATAATGTAATTTTTCTTTTGAGCATTTCCGTGTACGCTTTGACTGTGGCCTTCATCCCTTGTCAGGTTTGCGACTGCAATTTTCACTAATCCCCATGAGCACTTTGCC-TGACGAGGAAT-----AGAGAGCCCAGGCTGTTAACCTAGTCAAGGGGACTGCACCACATGT------TAGA------------TATCATAGGCCTTTGAGTCCAAGCAATACTTTTCAGTTGACAGTTCACTGAGAATTTAATACATATTTAAGAATGATCACAGAGAAATGTTTACCCCGGTTGCCCCCCAGAAA--GATTCCCTACATCAGAAATTCTGACTGATTTCAGAGAAGCCTGTA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113640038 392 + 115148730 TTTTTCAAAGTACATTTATTCTCTTTGT--GCCTGTTCCAGAGCACAAGTTTCGCTGCTTGGCCATAATGTAATTTTTCTTTTGAGCATTTCCGTGTACACTTTGACTGTGGCCTTCATCCCTTGTCAGGTTTGCGACTGCAATTTTCACTAATCCCCATGAGCACTTTCCC-TGACAAGGAAT-----CGAGAGCCCAGACTGTTAACCTAGTCAAGGGGACTGGACCACATGTT--AGATAGA------------TATCATAGGCCTTTGATTCCAAGCAATACTTTTCAGTTGACAATTCACTGAGAATTTAATACATATTTAACAAAGATCATAGAGAGATGTTTACCCCGGCTG-CCCCCAGAAA--GAGTCCCTACATCAGAAATTCCGGTTGATTTCAGAGATGTCTGTA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183470619 388 + 184069350 TTTTTCTAAGTACGTTTATTCTCTTTGT--GCCTGTCGCAGAGCACAAGTTTTGCTGCTTGGCCATGATGTAATTTTTCTTCTGAGCATCTCTGCGTACACTTTGACTGTGGCCTTCATCCCTTGTGAGGTTTGCGACTGCAACTTTCACTAATCCCCGTGAGCACTTTCCC-TGACAAGGAAC-----AGAGAGCCAAGGCTGTTAACCT-GTCAAGGGGACTGGGCCACATTT------TAGA------------TATCATAGGCCTTTGATTTCAAGCAATACTTTTCAGTTGACCGTTCACTGAGAATTTAATACATATTTAACAAAGATAATAGAGAGATGTTTACCCCGGTTGCCCCCCAGAAA--GAGTCCCTACACCAGAAATTCTGGTTGATTTCAGAGAAGCCTGCA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188849952 388 + 189454096 TTTTTCTAAGTACGTTTATTCTCTTTGT--GCCTGTCGCAGAGCACAAGTTTTGCTGTTCGGCCATGATGTAATTTTTCCTTTGAGCATCTCTGCGTACACTTTGACTGTGGCCTTCATCCCTTGTGAGGTTTGCGACTGCAACTTTCACTAATCCCCGTGAGCACTTTCCC-TGACAAGGAAC-----AGAGAGCCAAGGCTGTTAACCT-GTCAAGGGGACTGGGCCACATTT------TAGA------------TATCATAGGCCTTTGATTTCAAGCAATACTTTTCAGTTGACCGTTCACTGAGAATTTAATACATATTTAACAAAGATAATAGAGAGATGTTTACCCCGGTTGCCCCCCAGAAA--GAGTCCCTACACCAGAAATTCTGGTTGATTTCAGAGAAGCCTGCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178278144 388 + 178775436 TTTTTCTAAGtacatttattctctttgt--gCCTGTCGCAGAGCACAAGTTTTGCTGCTCGGCCatgatgtaatttttcttttgagcaTCTCTGTGTACACTTTGACTGTGGCCTTCATCCCTTGTAAGGTTTGCGACTGCAATTTTCACTAATCCCCGTGAGCACTTTCCC-TGACAAGGAAC-----AGAGAGCCAAAGCTGTTAACCT-GTCAAGGGGACTGGGCCACATTT------TAGA------------TACCATAGGCCTTTGATTCCAAGCAATACTTTTCAGTTGACCGTTCACTGagaatttaatacatatttaacgAGGATCATAGAGAGATGTTTACCCCGGTTGCCCCCCAGAAA--GAGTCCCTACACCAGAAATTCTGGTTGATTTCAGAGAAGCCTGTA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135220877 388 + 135778131 TTTTTCTAAGTACATTTATTCTCTTTGT--GCCTGTCGCAGAGCACAAGTTTTGCTGCTTGGCTATGATGTAATTTTTCTTTTGAGCATCTCTGCATACACTTTGACTGTGGCCTTCATCCCGTGTCAGGTTTGCAACTGCAATTTTCACTAATCCCCATGAGCACTTTCCC-TGACAAGGAAC-----AGAGAGCCAAGGCTGTTAACCT-GTCAAGGGGGCTGGGCCACATTT------TAGA------------TATCACAGGCCTTTGATTCCAAGCAATACTTTTCAGTTGACCGTTCACTGAGAATTTAATACATATTTAACAAAGATCATAGAGAGATGTTTACCCCAGTTGCCCCCCAGAAA--GAGTCCCTACACTAGAAATTCTGGTTGATTTCAGAGAAGCCTGTA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190371634 387 - 190850796 TTTATTGAAGTACATTTATTCTTTTTGG--TCCTTTCCCAGAGCACAGGTTTCACTGCTTTGCCATAATGTAATTTTTCCTTTGAGCATTTTCGTGTTCACTTTGACTGCAGCCTCCATCCCCTGTCAGGTTTGCTGTTGCAGTTTTCAGGAACCCCTGTGAGCACTTTCCC-GGACAAGGAAT-----AGGGAGCCAAGGCTGTTGACCTAGTCAAGGGCACTGGACCGCATTT------CAGA------------C-TCACAAG-TTTTGATTCCAAGCAATAGTTCTCAGTTGACAGTTCACTGAGAATTTAATACATATTTAACAAAGATCGTAGAGAGATGTTTACCTTGCTTGTTCCCCAAAAA--GATTCCCTACATCAGAAATTCCAGTTGATTTCAGAAAAGCCTGTA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87466886 389 - 129401213 TTTTTGCAAGTGGGTCTGTTCT--------GGCCTTCACAGGG-ATACCTTCCCCTGCTCAATGGTAACATACTTTTTCTGTGGAGTTGTGCCATGCACTCTTTGGTTGTGGCCTTCATTCACTGTCAGGTTTTCTGCTGTAGTTTTCTTTCATGCCTGGGAGCATGTTCCCTTGACAAGGACTAAAGGAGAGGATCCAAGCCATTAACCTAGTCAAGGACACTGGGACATATTTTTAAAACAAT------------TAGCAAACACCTATGATCCAAAGCCATACTTCTCTGCTGACAGTTCACTCCGAATTTAATACATATTAAATAAAGTGGAT-GAGAACTGTTCTCCTTAATT----CTCCAAAA--GGTTCCTTAGCCCTGAGGTTCTGGTTGATTTCAGTAAAGCCTGTA
i mm10.chr8                I 9 I 427
s canFam3.chr16             17797640 400 -  59632846 GTTTTCAAAGTACTTTTTTTTTTTTTCTTGGCTTTTCCCAGAGCACAGGTTTCTCAACTCAACAGTAACATAGTTTCTCTTTTGAGTATTTCCCTGTACACTTTGACTGTGGCCTTCATTCCTTGTCAGATTTGCTACTGCAGTTTTCACTAATCCCTGTGAATGCCTTCTC-TGACAAAGAAT-------AGAGTCTGGACCATTAACCCAGTCAAGGGCACTGGGCTACATTT------TAGAGAATTTTTTTTTTATCACACACCTTTGATCCCAAGCAATACTTCTTAGCTGACAGTTCACTGAGAATTTAATACATATGAAGCAAAATTGACAGAGAAGGGTTCGCCCTAGCCG---CCCAGAAAATGATTCCCTACCCCAGAGATTCTGGTCAACCCCAGGAAAGCCTGTA
i canFam3.chr16            C 0 C 0

a score=44411.000000
s hg38.chr4_KI270925v1_alt     70318 16 +    555799 ACCTGC----ATTAAAATTC
s panTro4.chr4             192769345 16 + 193495092 ACCTGC----ATTAAAATTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197873979 16 + 198332218 ATCTGC----ATTAAAATTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113640430 16 + 115148730 ACCTGC----ATTAAAATTC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183471007 16 + 184069350 ACCTGC----ATTAAAATTC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188850340 16 + 189454096 ACCTGC----ATTAAAATTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178278532 16 + 178775436 ACCTgc----actaaaattc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135221265 16 + 135778131 ACCTGC----ATTAAAATTC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190372021 16 - 190850796 ACCTTC----AGTAATCCTA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17798040 20 -  59632846 ACCTGCCAAGAGTACAACTG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87467275 427 - 129401213 I

a score=1057772.000000
s hg38.chr4_KI270925v1_alt     70334 355 +    555799  
s panTro4.chr4             192769361 355 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197873995 355 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113640446 356 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183471023 356 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188850356 356 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178278548 356 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135221281 404 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190372037 356 - 190850796  
i calJac3.chr3             C 0 I 327
s mm10.chr8                 87467702 375 - 129401213  
i mm10.chr8                I 427 C 0
s canFam3.chr16             17798060 500 -  59632846  
i canFam3.chr16            C 0 C 0

a score=21602.000000
s hg38.chr4_KI270925v1_alt     70689 7 +    555799 AGAAACA
s panTro4.chr4             192769716 7 + 193495092 AGAAACA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197874350 7 + 198332218 AGAAACG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113640802 7 + 115148730 AGAAACA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183471379 7 + 184069350 AGAAACA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188850712 7 + 189454096 AGAAACA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178278904 7 + 178775436 agaaaca
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135221685 7 + 135778131 AGAAACA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190372720 7 - 190850796 aaaaaCA
i calJac3.chr3             I 327 C 0
s mm10.chr8                 87468077 7 - 129401213 AGATGCA
i mm10.chr8                C 0 I 225
s canFam3.chr16             17798560 4 -  59632846 AAAA---
i canFam3.chr16            C 0 C 0

a score=156546.000000
s hg38.chr4_KI270925v1_alt     70696 53 +    555799 AGTTAGCTTGGAAACAAGAAGG---TATAATTTTTTCTCTCATGAACTTTTCTTT--A
s panTro4.chr4             192769723 54 + 193495092 AGTTAGCTTGGAAACAAGAAGG---TATAATTTTTTCTCTCATGATCTTTTCTTT-AA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197874357 55 + 198332218 AGTTAGGTTGGAAACAAGAAGG---TATAATTTTTTCTCTCATGAAGTTTCCTTTAAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113640809 53 + 115148730 AGTTAGGTTGGAAACAAGAAGA---TATAATTTTTTCTCTCGTGAACTTTCCTTT--A
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183471386 55 + 184069350 AGTTAGCTTAGAAACAAGAAAG---TATAATTTTTTCTCTCATGAACTTTCTTCTAAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188850719 55 + 189454096 AGTTAGCTTAGAAACAAGAAAG---TATAATTTTTTCTCTCATGAACTTTCTTCTAAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178278911 55 + 178775436 agttagcttagaaacaagaaag---tataattttttctctcatgaactttcctttaaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135221692 55 + 135778131 AGTTAGCTTAGAAACAAGAAAG---TATAATTTTTTCTCTCATGAACTTTCTTTTAAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190372727 53 - 190850796 CATTAGCTTGGAAACAAGAAGG---TATAATTCTTTCTCTCATGAATTTTCCTTT--A
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17798564 54 -  59632846 --TTAGCTTGGAAAGGAGAAGTAACCAGGATTTCTTCTTTCATGCCCTTTCCTAAA--
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87468084 225 - 129401213 I

a score=2689681.000000
s hg38.chr4_KI270925v1_alt     70749 799 +    555799  
s panTro4.chr4             192769777 800 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197874412 798 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113640862 800 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183471441 816 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188850774 818 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178278966 800 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135221747 803 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190372780 791 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87468309 751 - 129401213  
i mm10.chr8                I 225 I 9565
s canFam3.chr16             17798618 853 -  59632846  
i canFam3.chr16            C 0 C 0

a score=55115.000000
s hg38.chr4_KI270925v1_alt     71548 19 +    555799 TCGCTGCGTGCTGACACAG
s panTro4.chr4             192770577 19 + 193495092 TCGCTGCGTGCAGACACAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197875210 19 + 198332218 TCGCTGTGTGCTGACACAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113641662 19 + 115148730 TCGCTGCTTGCTGACACAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183472257 19 + 184069350 TGGCCGCGTGCTGACACAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188851592 19 + 189454096 TGGCCGCGTGCTGACACAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178279766 19 + 178775436 TGGCCGCGTGCTGACACAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135222550 19 + 135778131 TCACCGCGAGCTGACACAG
i chlSab2.chr7             C 0 I 12
s calJac3.chr3             190373571 19 - 190850796 TCAGCGCATGCTGATACAG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17799471 19 -  59632846 TCGTTGCAAGTTGATACGG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87469060 9565 - 129401213 I

a score=5329.000000
s hg38.chr4_KI270925v1_alt     71567 7 +    555799 CCTCCCT
s panTro4.chr4             192770596 7 + 193495092 CCTCCCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197875229 7 + 198332218 ACTCCCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113641681 7 + 115148730 GCTCTCT
i nomLeu3.chr7b            C 0 I 1
s rheMac3.chr5             183472276 7 + 184069350 GCTCCCC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188851611 7 + 189454096 GCTCCGC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178279785 7 + 178775436 GCTGCCC
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190373590 7 - 190850796 ACGCCCT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17799490 3 -  59632846 GCT----
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87469060 9565 - 129401213 I
e chlSab2.chr7             135222569 12 + 135778131 I

a score=4792.000000
s hg38.chr4_KI270925v1_alt     71574 3 +    555799 CGT
s panTro4.chr4             192770603 3 + 193495092 CGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197875236 3 + 198332218 CAT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183472283 3 + 184069350 CGT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188851618 3 + 189454096 CGT
i macFas5.chr5             C 0 T 36
s papAnu2.chr5             178279792 3 + 178775436 CGT
i papAnu2.chr5             C 0 T 36
s calJac3.chr3             190373597 3 - 190850796 CAT
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87469060 9565 - 129401213 I
e canFam3.chr16             17799493 0 -  59632846 C
e chlSab2.chr7             135222569 12 + 135778131 I
e nomLeu3.chr7b            113641688 1 + 115148730 I

a score=6747.000000
s hg38.chr4_KI270925v1_alt     71577  44 +    555799 AGAGAAACTCCTATATAACTTTG---------------------------------------CTAA-------------------------------------------TCTTGGATAGCACAGAG
s panTro4.chr4             192770606  45 + 193495092 AGAGAAACTCCTGTATACCTTTGC--------------------------------------CTAA-------------------------------------------GCTTGGATAGCAGAGAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197875239 126 + 198332218 AGAGAAACTCCTATATAACTTTGCTTCTGCTTGGATAGCACAGAGACACAACTTGCTGCGTGCTGACACAGGCTCCCTCATAGAGAAACTCCTATACAACTTTGCTTCTGCTTGTATAGCACAGAG
i ponAbe2.chr4             C 0 C 0
s calJac3.chr3             190373600  44 - 190850796 ACAGAAACTCCT-TCTGACTTTGC--------------------------------------ctct-------------------------------------------gcttggatggcacagag
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87469060 9565 - 129401213 I
e canFam3.chr16             17799493   0 -  59632846 C
e chlSab2.chr7             135222569  12 + 135778131 I
e papAnu2.chr5             178279795  36 + 178775436 T
e macFas5.chr5             188851621  36 + 189454096 T
e rheMac3.chr5             183472286   0 + 184069350 C
e nomLeu3.chr7b            113641688   1 + 115148730 I

a score=5730.000000
s hg38.chr4_KI270925v1_alt     71621 4 +    555799 ACAC
s panTro4.chr4             192770651 4 + 193495092 ACAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197875365 4 + 198332218 ACAC
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             188851585 4 + 189454096 ACAC
i macFas5.chr5             T 36 C 0
s papAnu2.chr5             178279759 4 + 178775436 ACAC
i papAnu2.chr5             T 36 C 0
s calJac3.chr3             190373644 4 - 190850796 acac
i calJac3.chr3             C 0 I 3035
e mm10.chr8                 87469060 9565 - 129401213 I
e canFam3.chr16             17799493 0 -  59632846 C
e chlSab2.chr7             135222569 12 + 135778131 I
e rheMac3.chr5             183472286 0 + 184069350 C
e nomLeu3.chr7b            113641688 1 + 115148730 I

a score=11140.000000
s hg38.chr4_KI270925v1_alt     71625 15 +    555799 AACTCGCTGCGTGCT
s panTro4.chr4             192770655 15 + 193495092 AACTCGCTGCGTGCT
i panTro4.chr4             C 0 I 648
s ponAbe2.chr4             197875369 15 + 198332218 AACTCGCTGCATGCT
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             188851589 15 + 189454096 GACTGGCCGCGTGCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178279763 15 + 178775436 GACTGGCCGCGTGCT
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87469060 9565 - 129401213 I
e canFam3.chr16             17799493  0 -  59632846 C
e calJac3.chr3             190373648 3035 - 190850796 I
e chlSab2.chr7             135222569 12 + 135778131 I
e rheMac3.chr5             183472286  0 + 184069350 C
e nomLeu3.chr7b            113641688  1 + 115148730 I

a score=42388.000000
s hg38.chr4_KI270925v1_alt     71640 66 +    555799 GACACAGGCTCCCCCATAGAGAAACTCCTGTATACCTTTGCCTAAGCTTGGATAGCAGAGAGACAC
s panTro4.chr4             192771318 66 + 193495092 GACACAGGCTCCCTCATAGAGAAACTCCTGTATACCTTTGCCTAAGCTTGGATAGCACAGAGACAC
i panTro4.chr4             I 648 C 0
s ponAbe2.chr4             197875384 66 + 198332218 GACACAGGCTCCCCCATAGAGAAACTCCTATATAACTTTGCTTCTGCTTGGATAGCACAGAGACAC
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             188851604 66 + 189454096 GACACAGGCTCCGCCGTGCAGAAACTCCTGCATGCCTTTGCctctgcttggatagcacggagacac
i macFas5.chr5             C 0 T 49
s papAnu2.chr5             178279778 66 + 178775436 GACACAGGCTGCCCCGTGCAGAAACTCCTGTATGCCTTTGCCTCTGCTGGGATAGCACAGAGACAC
i papAnu2.chr5             C 0 T 49
s canFam3.chr16             17799493  9 -  59632846 --------------CATATAGAA-------------------------------------------
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87469060 9565 - 129401213 I
e calJac3.chr3             190373648 3035 - 190850796 I
e chlSab2.chr7             135222569 12 + 135778131 I
e rheMac3.chr5             183472286  0 + 184069350 C
e nomLeu3.chr7b            113641688  1 + 115148730 I

a score=2213.000000
s hg38.chr4_KI270925v1_alt     71706 32 +    555799 AACAACTTGCTGTGTGCTGACACAGCCTCCCT
s panTro4.chr4             192771384 29 + 193495092 AAC---TCGCTGCATGCAGACACAGGCTCCCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197875450 29 + 198332218 AAC---TCACTGTGTGCTGACACAGGCTCCCC
i ponAbe2.chr4             C 0 C 0
s canFam3.chr16             17799502  9 -  59632846 AACAACTAG-----------------------
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87469060 9565 - 129401213 I
e calJac3.chr3             190373648 3035 - 190850796 I
e chlSab2.chr7             135222569 12 + 135778131 I
e papAnu2.chr5             178279844 49 + 178775436 T
e macFas5.chr5             188851670 49 + 189454096 T
e rheMac3.chr5             183472286  0 + 184069350 C
e nomLeu3.chr7b            113641688  1 + 115148730 I

a score=881.000000
s hg38.chr4_KI270925v1_alt     71738 3 +    555799 CAG
s panTro4.chr4             192771413 3 + 193495092 CAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197875479 3 + 198332218 CAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113641689 3 + 115148730 CAT
i nomLeu3.chr7b            I 1 C 0
e mm10.chr8                 87469060 9565 - 129401213 I
e canFam3.chr16             17799511 0 -  59632846 C
e calJac3.chr3             190373648 3035 - 190850796 I
e chlSab2.chr7             135222569 12 + 135778131 I
e papAnu2.chr5             178279844 49 + 178775436 T
e macFas5.chr5             188851670 49 + 189454096 T
e rheMac3.chr5             183472286 0 + 184069350 C

a score=2286.000000
s hg38.chr4_KI270925v1_alt     71741 2 +    555799 AG
s panTro4.chr4             192771416 2 + 193495092 AG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197875482 2 + 198332218 AG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113641692 2 + 115148730 AG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183472286 1 + 184069350 -G
i rheMac3.chr5             C 0 I 1
s macFas5.chr5             188851621 1 + 189454096 -G
i macFas5.chr5             T 49 I 1
s papAnu2.chr5             178279795 1 + 178775436 -G
i papAnu2.chr5             T 49 I 1
e mm10.chr8                 87469060 9565 - 129401213 I
e canFam3.chr16             17799511 0 -  59632846 C
e calJac3.chr3             190373648 3035 - 190850796 I
e chlSab2.chr7             135222569 12 + 135778131 I

a score=74631.000000
s hg38.chr4_KI270925v1_alt     71743 32 +    555799 AGAAACTCCTGTATACCTTTGCctctgcttgt
s panTro4.chr4             192771418 32 + 193495092 AGAAACTCCTGTATAACTTTGtctctgcttgt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197875484 32 + 198332218 AGAAACTCCTGTATACCTTTGCTTCTGCTTGT
i ponAbe2.chr4             C 0 I 810
s nomLeu3.chr7b            113641694 32 + 115148730 AGAAACTCATGTATACCTTTGCTtctgcttgg
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183472288 32 + 184069350 AGAAACTCCTGCATGCCTTTGCctctgcttgg
i rheMac3.chr5             I 1 C 0
s macFas5.chr5             188851623 32 + 189454096 AGAAACTCCTGCATGCCTTTGCctctgcttgg
i macFas5.chr5             I 1 C 0
s papAnu2.chr5             178279797 32 + 178775436 AGAAACTCCTGTATGCCTTTGCCTCTGCTGGG
i papAnu2.chr5             I 1 C 0
s chlSab2.chr7             135222581 32 + 135778131 AGAAACTCCTGTATTTCTTTGCCTCTGCTTGG
i chlSab2.chr7             I 12 C 0
s canFam3.chr16             17799511 16 -  59632846 ----------------CATTGCctctgctcgg
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87469060 9565 - 129401213 I
e calJac3.chr3             190373648 3035 - 190850796 I

a score=874439.000000
s hg38.chr4_KI270925v1_alt     71775 360 +    555799 atagcacagagacactttaaatttacaagcacaaacaggaacccttgtttatattatctctcaaa-aaattctttccgcagtgacctcctgctcagcaaatagcaccacaaactcctgagctgttcgag----------------caactttcatccttcacatgatctttcttctagatgccc----------cacctatcatctagtcctgttgattttttgtccaaaaagcctcttgggtcaatgtgtttttcttcacttgtactgctgttcccttcctggGGtttatctagcagaggaaagagcaatcgtctctggaggaaggtggcaccctggtgagccgttccagttactc-atgcacaatgagccgcattcagttagaaaa
s panTro4.chr4             192771450 360 + 193495092 atagcacagagacactttaaatttacaagtacaaacgggaacccttgtttatattatctctcaaa-aaattctttccgcagcgacctcctgctcagcaaatagcaccacaaactcctgagctgttcgag----------------caactttcatccctcacatggtcttgcttctagatgcct----------cacctatcttctagtcctgttgattttttgtccaaaaAGCCTCTTGGGTCAATGTGTTTTTCTTCACTTGTACAGCTGTTCCCTTCCTGGGGtttatctagcagaggaaagagcaatcgtctctggaggaaggtggcaccctggtgagccgttccagttactc-atgcacaatgagccacattcagttagaaaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197876326 377 + 198332218 atagcacagagacactttaaatttacaatcacaaataggaacccttgtttatattacctctcaaa-aagttctttccacagtgacctcttgctcagcaaatagcaccagaaactcctgagctgttcaagccagaattctggtgatcaactttcatcctttacatgatcttgcttctagatgccc----------cacctatcatctagtcctgttgattttttgtccaaaaatcctcttgggtcaatgtatttttcttcacttctactgctattcccttcctggGGtttatctagcagaggaaggagcaattgtctctggaggaaggtggcaccctagtgagccgttccagttactcgatgcacaatgagctgcattcagttaaaaaa
i ponAbe2.chr4             I 810 C 0
s nomLeu3.chr7b            113641726 377 + 115148730 atagcacagagacactttaaatttacaggcacaaataggaacccttgtttatattacctctcaaa-aagttctttccacagtgacctcttgctcggcaaatagcaccacaaattcctgagctgttcgagccagaattctggtgattgactttcatccttcatatgatcttgcttctagatgccc----------cacctatcatctagtcctgttgattttttgtccaaaaagcctcttgggtcagtgtatttttcttcacttgtgctgctgttcccttcctggGGtttatctagcagaggaaagagcaatcttctctggaggaaggtggcgccctagtgagcagttccagttactcgatgcacaatgagctgcattcacttaaaaaa
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183472320 371 + 184069350 atagcacggagacactttaaatttacaggcacaagtaggaacccttgtttacatcacctctcaag-aagtcctttccgcagtgacctcctgctcagcaaatagc------aactcctgagctgttggagccaggattccggtgatcacccttcatccttcacataatcttgtctctagatgccc----------caactaccatctagtcctgttgactttttgtccacaaagcaccttgggtcagtgtatttttctttgcttgtaccgctattcccttCCCGGGGTTCATCTCACAGAGGAAAGGGCGATCGTCTCTGGAGGAAGGTAGCACCCTAGTGAGCCGTTCCAGTTACTCCGTGCACAAGGAGCTGCCTTCAGTTAGAAAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188851655 371 + 189454096 atagcacggagacactttaaatttacaggcacaagtaggaacccttgtttacatcacctctcaag-aagtcctttccgcagtgacctcctgctcagcaaatagc------aactcctgagctgttggagccaggattccggtgatcacccttcatccttcacataatcttgtccctagatgccc----------caactaccatctagtcctgttgactttttgtccacaaagcaccttgggtcagtgtatttttctttgcttgtaccgctattcccttCCCGGGGTTCATctcgcagaggaaagggcgatcgtctctggaggaaggtagcaccctagtgagccgttccagttactccgtgcacaaggagctgccttcagttagaaag
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178279829 371 + 178775436 ATAGCACAGAGACACTGTAAATTTACAGGCACAAGTAGGAACCCTTGTTTACATCACCTCTCAAG-AAGTTCTTTCCTCAGTGACCTCCTGCTCAGCAAATAGC------AACTCCTGAGCTGTTGGAGCCAGGATTCCGGTGATCACCCTTCATCCTTCACATAATCTTGTCTCTAGATGCCC----------CAACTACCATCTAGTCCTGTTGACTTTTTGTCCACAAAGCATCTTGGGTCAATGTATTTTTCTTCACTTGTTCCGCTATTCCCTTCCCGGGGTTCATCTCGCAGAGGAAAGGGCGATCGTCTCTGGAGGAAGGCAGCACCCTAGTGAGCCGTTCCAGTCACTCTGTGCACAAGGAGCTGCCTTCAGTTAGAAAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135222613 370 + 135778131 GTAGCACAGAGACACTTCAAATTTACAGGCACAAGCAGGAACCCTTGTTGACATCACCTCTCAAG-AAGTCCTTT-CGCGGTGACCTCCTGCTCAGCAAATAGC------AGCTCCTGAGCTGTTGGAGCCAGGATTCCGGTGATCCCCCTTCATCCTTCACACAGTCTTGTCTCTAGATGCCC----------CAACTACCATCTAGTCCTGTTGACTTTTTGTCCACAAAGCATCCTGGGTCAATGTATTTTTCTTCGCTTGTACCGCTATTCCCTTCCCGGGGTTCATCTCGCAGAGGAAAGGGCCATCGTCTCTGGAGGAAGGCAGCACCCTAGTGAGCCGCTCCAGTCACTCCGTGCACAAGGAGCTGCCTTCAGTTAGAAAG
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17799527 377 -  59632846 atggcacagagacaccttaaattcacacatatagaagtgaactcttgctcacatcacctttcaaacgagttcattcctctgtgctacccagcccaggcggcagcatcacagaataccatgtggcctcagcccaaattctggcgatcaaatttggttcctcacattcttttgctcctggacccccagtcatcacacaaccaccctcaactcttgcggaccctatgactagagactatcttgaaccaacgt-tttttctt----------gccactatcttagctcacttcacttagcagaggaaagagtaattagctctggaggaatatagcattatatggagccatgacagttattttatgggtactaaggggcatttaacttaaaaa
i canFam3.chr16            C 0 I 4399
e mm10.chr8                 87469060 9565 - 129401213 I
e calJac3.chr3             190373648 3035 - 190850796 I

a score=3073719.000000
s hg38.chr4_KI270925v1_alt     72135 1357 +    555799  
s panTro4.chr4             192771810 1365 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197876703 1367 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113642103 1369 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183472691 1433 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188852026 1376 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178280200 1370 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135222983 1368 + 135778131  
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87469060 9565 - 129401213 I
e canFam3.chr16             17799904 4399 -  59632846 I
e calJac3.chr3             190373648 3035 - 190850796 I

a score=8852.000000
s hg38.chr4_KI270925v1_alt     73492 3 +    555799 taT
s panTro4.chr4             192773175 3 + 193495092 taT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197878070 3 + 198332218 taT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113643472 3 + 115148730 taT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183474124 3 + 184069350 taT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188853402 3 + 189454096 tat
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178281570 3 + 178775436 TAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135224351 3 + 135778131 tat
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87478625 3 - 129401213 tgt
i mm10.chr8                I 9565 C 0
e canFam3.chr16             17799904 4399 -  59632846 I
e calJac3.chr3             190373648 3035 - 190850796 I

a score=2897410.000000
s hg38.chr4_KI270925v1_alt     73495 1073 +    555799  
s panTro4.chr4             192773178 1077 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197878073 1065 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113643475 1076 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183474127 1076 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188853405 1076 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178281573 1077 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135224354 1077 + 135778131  
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87478628 1068 - 129401213  
i mm10.chr8                C 0 I 2
s canFam3.chr16             17804303 1044 -  59632846  
i canFam3.chr16            I 4399 C 0
e calJac3.chr3             190373648 3035 - 190850796 I

a score=2558202.000000
s hg38.chr4_KI270925v1_alt     74568 762 +    555799  
s panTro4.chr4             192774255 762 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197879138 761 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113644551 752 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183475203 761 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188854481 761 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178282650 758 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135225431 762 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190376683 737 - 190850796  
i calJac3.chr3             I 3035 C 0
s mm10.chr8                 87479698 770 - 129401213  
i mm10.chr8                I 2 C 0
s canFam3.chr16             17805347 781 -  59632846  
i canFam3.chr16            C 0 C 0

a score=857237.000000
s hg38.chr4_KI270925v1_alt     75330 296 +    555799 AAATGTCTATTTATGTTTGCTTTTTTAAAATGTGGATCTCGGTGGGGTCA---GAAACAGGAGCAAAGTTTCTGCTACTCTGTCCATCCCAGAAAAGC---CCCAGTTAT------GTGCCATCATCCTCTATGATATACACTCAATTTCACCAAAGCAAATTGTGATTTACC--------------TG--------------ATCGCAAAACCTCTTCTGATTAAAATTAAATATTGTAATTTCAGATGATATTTTTTGTTATCAGAGTAACTTTGCTGTATTCTTTGTTACTAGCAAAACTAGGGATATTTGGTAGTTAATGG-TCCTCACATCA
s panTro4.chr4             192775017 296 + 193495092 AAATGTCTATTTATGTTTGCTTTTTTAAAATGTGGATCTCAGTGGGGTCA---GAAACAGGAGCAAAGTTTCTGCTACTCTGTCCATCCCAGAAAAGC---CCCAGTTAT------GTGCCATCATCCTCTATGATATACACTCAATTTCACCAAAGCAAATTGTGATTTACC--------------TG--------------ATTGCAAAACCTCTTCTGATTAAAATTAAATATTGTAATTTCTGATGATATTTTTTGTTATCAGAGTACCTTTGTTGTATTCTTTGTTACTAGCAAAACTAGGGATATTTGGTAGTTAATGG-TCCCCACGTCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197879899 293 + 198332218 AAATGTC----TATGTTTGCTTTTTTAAAATGTGGATCTCAATGGGATCA---GAAACAGGAGCAAAGTTTCTTCATCTCTGTCCATCCCAGAAAAGC---CCCAGTTAT------GTGCCATCATCCTCTATGATATACACTCAATTTCACCAAAGCAAATTGTGATTTACC--------------TG--------------ATTGCAAAACCTCTTCAGATTAAAATTAAATATTGTAATTTCAGATGATATTTTTTGTTATCAGAGTACCTTTGTTGTATTCTTTGTTACTAGCAAAACTAGGGATGTTTGGTAGTTAATGGTTCCTCACATCA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113645303 296 + 115148730 AAATGTCTATTTATGTTTGATTTTTAAAAATGTGGATCTCAATGGGATCA---GAAACAGGAGCAAAGTTTCTGCATCTCTGTCCATTCCAGAAAAGC---CCCAGTTAT------GTGCCATCCTCCTCTGTGATATACACTCAATTTCACCAAAGCAAATTGTGATTTACC--------------TG--------------ATTGCAAAACCTCTTCTGATTAAAATTAAATATTGTAATTTCAGATGATATTTTTTGTTATCAGCATACCTTTGTTGTATTCTTTGTTCCTAGCAAAACTAGGGATATTTGGTAGTTAATGG-TCCTCACATCA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183475964 307 + 184069350 AAATGTCCATTTAAGTTTGCTTTTTTAAAATGTGGATCTCAATGGAATCA---GAAACAGGAGCAAACTTTCTGCATCTCTGTCCATCCCAGAAAAGT---CCCAATTAT------GTGCCATCATCCTCTATGATATACACTCAATTTCACCAAAGCAAATTGTGACTTACCTTTTTAATTTTTCTTG--------------ATTGCAAAACCTCTTCTGATTAAAATTAAATACTGTAATTTTGGATG---TTTTTTGTTATCAGAGTGCCTTTGTTGTATTCTTTGTTACTAGCAAAACTAGGGATATTTGGTAGTTAATGG-TCCTCACATCA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188855242 308 + 189454096 AAATGTCCATTTAAGTTTGCTTTTTTAAAATGTGGATCTCAATGGAATCA---GAAACAGGAGCAAACTTTCTGCATCTCTGTCCATCCCAGAAAAGT---CCCAATTAT------GTGCCATCATCCTCTATGATATACACTCAATTTCACCAAAGCAAATTGTGACTTACCTTTTTAATTTTTCTTG--------------ATTGCAAAACCTCTTCTGATTAAAATTAAATACTGTAATTTTGGATG--TTTTTTTGTTATCAGAGTGCCTTTGTTGTATTCTTTGTTACTAGCAAAACTAGGGATATTTGGTAGTTAATGG-TCCTCACATCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178283408 308 + 178775436 AAATGTCCATTtaagtttgcttttttaaaatgtggatctCAATGGGATCA---GAAACAGGGGCAAACTTTCTGCATCTCTGTCCATCCCAGAAAAGT---CCCAGTTCT------GTGCCATCATCCTCTATGATATACACTCAATTTCACCAAAGCAAATTGTGACatacctttttaatttttcttg--------------attGCAAAACCTCTtctgattaaaattaaatactgtaATTTTGGATG--tttttttGTTATCAGAGTGCCTTTGTTGTATTCTTTGTTACTAGCAAAACTAGGGATATTTGGTAGTTAATGG-TCCTCACATCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135226193 308 + 135778131 AAATGTCCATTTAAATTTGCTTTTTTAAAATGTAGATCTCAATGGGATCA---GAAATAGGGGCAAACTTACTGCATCTCTGTCCATCCCAGAAAAGT---CCCAGTTAT------GTGCCATCATCCTCTATGATATACACTTAATTTCACGAAAGCAAATTGTGACTTACCTTTTTAATTTTTCTTG--------------ATTGCAAAACCTCTTCTGATTAAAATTAAATACTGTAATTTTGGATG--TTTTTTTGTTATCAGAGTGCCTTTGTTGTATTCTTTGTTACTAGCAAAACTAGGGATATTTGGTAGTTAATGG-TCCTCACATCA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190377420 308 - 190850796 AAATGTCCACATAAGGTTGCGTTTGTGAAGTGTGGATCTCAATGCAATCA---GAAAGAGGAGCAAACTTTCTGCATCCCTGTACATTCCAGAAAAGC---CTCACTT-T------GTGCCATCACCCTCTATGATACACACTCAATTTTGCCGAAGCAAATTGTGATTTACCTTTTTAATCTTTCTTG--------------ATTGCAAAACTTCATCTGATTAAAATTAAATATTGGAATTTAGAATGATATTTTTTGTTATCACAGTGCC-TTGCTGTATTCTCTGTTACTAGCAAAACTAAGTATATTTGGTAGTGAATGG-TCCTCACATGA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87480468 305 - 129401213 AGTCACCCATGCAAGCTTG-----------GATGAATCACACTGACGCCATATAAAACAGGG-----CTTGC--CCACATTCTCTACCCCAGAAGAGCTCTCCTGGCTATGACTCAGTTCCCTTTTGTTATATATTGTATACCAAATTTTCTGAAATCATTTTTTGTTCTACTTTTTACTCTTTTTTTGTTGTAGTTTGTTCTGTTTTAAAGACCCATTTGATCAGAAACACATGGTGGGAGGCAGGGTG------------CCAAGAGCATCTTCTCCTTACTCCTTCTTAGCAGGAAAGTCAGTG-TACTTGAGAGATAATGA-TCCTCTCACCa
i mm10.chr8                C 0 C 0
e canFam3.chr16             17806128   0 -  59632846 C

a score=2678997.000000
s hg38.chr4_KI270925v1_alt     75626 760 +    555799  
s panTro4.chr4             192775313 760 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197880192 760 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113645599 760 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183476271 766 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188855550 766 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178283716 766 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135226501 749 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190377728 745 - 190850796  
i calJac3.chr3             C 0 I 7
s mm10.chr8                 87480773 823 - 129401213  
i mm10.chr8                C 0 I 142
s canFam3.chr16             17806128 757 -  59632846  
i canFam3.chr16            C 0 C 0

a score=87566.000000
s hg38.chr4_KI270925v1_alt     76386 30 +    555799 ----------TAcagtcatgcattgcttaacgactgggat
s panTro4.chr4             192776073 30 + 193495092 ----------TAcagtcatgcattgcttaacgacttggat
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197880952 30 + 198332218 ----------TACTgtcatgcattgcttaacgactggaat
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113646359 30 + 115148730 ----------CAGagtcatgcattccttaacgactgggat
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183477037 30 + 184069350 ----------TACCAtcacgcattgcttaacgactgggat
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188856316 30 + 189454096 ----------TACCAtcacgcattgcttaacgactgggat
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178284482 30 + 178775436 ----------TACTGTCACGCATTGCTTAACGACtgggat
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135227250 30 + 135778131 ----------TACCAtcacgcattgcttaacgactgggat
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190378480 30 - 190850796 ----------TAcagtcacgcattgcttaacgacagggat
i calJac3.chr3             I 7 C 0
s canFam3.chr16             17806885 40 -  59632846 TACTAGATTTAATTATTATCCATTCCATAGATACTGGAAT
i canFam3.chr16            C 0 I 34
e mm10.chr8                 87481596 142 - 129401213 I

a score=1000940.000000
s hg38.chr4_KI270925v1_alt     76416 383 +    555799 accttctgagaaatgtgtcattaggcgattttatcattgtgtgaacacagatggtacttacacaaaccaaggtggtacagcctgctgcacacctgggctatatagtatagcacacccgggttgtatagtatagcttactgttgtgaggctacaaacttgcatagaatgagactgttctgaatactgtaggcaattataacacattgctaagtatttgtttatctaaacatagaacagatacaatcaaatacagtacaaaagattataaatggtacacttaccatgaatggaacttgcaggactggaagtttctctgggtgtcagt---gagtgactggtgagggtatgtgaaggcttaggacgttactgtccactactgtagatgt
s panTro4.chr4             192776103 383 + 193495092 accttctgagaaatgtgtcattaggcgattttatcattgtgtgaacacagatggtacttacacaaaccaaggtggtacagcctgctgcacacctgggctatatagtatagcacacccaggttgtatagtatagcttactgttgtgaggctacaaacttgcatagaatgagactgttctgaatactgtaggcaattataacacattgctaagtatttgtttatctaaacatagaacagatacaatcaaatacagtacaaaagattataaatgatacacttaccatgaatggaacttgcaggactggaagtttctctgggtgtcagt---gagtgactggtgagggtatgtgaaggcttaggacgttactgtccactactgtagatgt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197880982 381 + 198332218 atcttctgacaaatgtgtcattaggcgattttatcgttgtgtgaacacggatggtacttacacaaaccaagatggtacagcctattgcacacctgggctgtatagtatagcacacctgggttatataatatagcttactgctgtgaggctacaaacttgcatagtatgtgactgttctgaatactgtaggcaattgtaacacattgctaagtatttgttta--taaacatagaacagatacaatcaaatacagtacaaaagattataaatggtacacttaccataaatggaacttgcaggactggaagtttctctgggtgtcagt---gagtgagtggtgaaggtatgtgaaggcttaggacattactgtccactactgtagatgt
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113646389 360 + 115148730 atcttctgagaaatgtgtcattaggcgattttatcattgtgtgaacacagatggtactttcacaaaccaagatggtacagcctactgtacacctgggctatatag-----------------------tatagcttactgctgtgaggctacaaacttgcagagtatgtgactgttctgaatactgtaggcaattgtaacacattgctaagtatttgtttatctaaacatagaacagatacaaccaaatacggtacaaaagattataaatgggacatttaccatgaatggaacttgcaggactggaagtttctctgggtgtcagt---gagtgagtggtgagggtatgtgaaggcttaggacattactctccactactgtagatgt
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183477067 358 + 184069350 acgttctgagaaatgtgtcgttaggcaattttatcgttgtgtgaacacacgtggtacttacacaaaccaagatggtacaaccaactgcacacctgggccacatag-----------------------tatagcttactgctgtgagactacaaacgtgcatagtatgtgactgtcctgaatactgtaggcaactgtaacacattgctatgtatttgtttatctaaacatagaaaagatgcaatc-aatacagtacaaaagctt-ttaatggtacacttaccatggatggaacttgcaggactggaagttgctctgggtgtcagt---gagtgagtggtgagggaatgtgaaggcctaggacttcactgtccactactgtagatgt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188856346 359 + 189454096 acgttctgagaaatgtgtcgttaggcaattttatcgttgtgtgaacacacgtggtacttacacaaaccaagatggtacaaccaactgcacacctgggccacatag-----------------------tatagcttactgctgtgagactacaaacgtgcatagtatgtgactgttctgaatactgtaggcaactgtaacacattgctaagtatttgtttatctaaacatagaaaagatacaatcaaatacagtacaaaagctt-ttaatggtacacttaccatgaatggaacttgcaggactggaagttgctctgggtgtcagt---gagtgagtggtgagggaatgtgaaggcctaggacttcactgtccactactgtagatgt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178284512 359 + 178775436 acgttctgagaaatgtgtcgttAGGCAATTTTATCGTTGTGTGAACACACGTGGTACTTACACAAACCAAGATGGTACAACCAACTGCACACCTGGGCCACATAG-----------------------TATAGCTTACTGCTGTGAGACTACAAACGTGCATAGTATGTGACTGttctgaatactgtaggcaattgtaacacattgctaagtatttgtttatctaaacatagaaaagatacaatcAAATACAGTACAAAAGATT-TTAATGgtacacttaccatgaatggaacttgcaggactggaagttgctctgggtgtcAGT---GAGTGAGTAATGAgggaatgtgaaggcctaggacttCACTGTCCACTACTGTAGATGT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135227280 359 + 135778131 aggttctgagaaacgtgtcgttaggcaattttatcattgtgtgaacacacgtggtacttacacaaaccaagatggcacagcctactgcacacctgggccacacag-----------------------tatagcttactgctgtgaggccacaaacttgcatagtatgtgactgttctgaatactgtaggcaagtgtaacacattgctaagtatttgtttatctaaacatagaaaagatacaatcaaatacagtacaaaagatt-ttaatggtacacttaccatgaatggaacttgcaggactggaagttgctctgggtgtcact---gagtgaatggtgagggaatgtgaaggcctaggacatcactgtccactactgtagatgt
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190378510 355 - 190850796 acattctgagcaatgcgtcgttaggcaattttatcattgtgtggacatagatggtacttacacaaaccaagatggcacagactgctacacacctgggtgatacag-----------------------tcgggctcactgctgttaggctacacacttgtggagtatgtgactgtcctgaatactgcaggcaaaggtaacacaatg----gtatttgtttatctaaacatagaaaagacacaataaaatacagtacaaaagattataaatgctatacttaccatgaatggagcttgcaggactgggagattctctgggtgtgagcccggtgtgagtggtgag----tgtgaaggcctgggacacggctgtgtgctactgtggaTGT
i calJac3.chr3             C 0 I 1667
e mm10.chr8                 87481596 142 - 129401213 I
e canFam3.chr16             17806925  34 -  59632846 I

a score=335013.000000
s hg38.chr4_KI270925v1_alt     76799 143 +    555799 tataaatgctgcacacttaacctcagcttactgtaacatttttactttattaactttttgactgttttgtaacaacatctagctaaaaatgcaaatacattgtacagttgtacaagaatagaaagaaaaata-tttttaataga
s panTro4.chr4             192776486 143 + 193495092 tataaatgctgcacacttaacctcagcttactgtaacatttttactttattaactttttgactgttttgtaacaacacctagctaaaaatgcaaatacattgtacagttgtacaagaatagaaagaaaaata-tttttaataga
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197881363 141 + 198332218 tataaacaccgcacacttaacctcagcttactgtaacatttttacttt-ttaac-ttttgactgttttgtaagaacatctagctaaaaatgcaaacacattgtacagttgtacaagaataGAAAGAAAAACA-TTTTTAATAGA
i ponAbe2.chr4             C 0 I 6080
s nomLeu3.chr7b            113646749 143 + 115148730 tataaacagtgcacacttgacctcagcttactgtaacatttttactttattaactttttgactgttttgtaagaacatctagctaaaaatgcaaacacattgtacagttgtacaagaatagaaagaaaaaca-tttttaataga
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183477425 143 + 184069350 tagaaactctgcacacttaacctcagcttactgtaacatttttactttattaactttttgactgttttgtaagaacatctagctaaaaatgcaaacacattgcaccattgtacaagaatggaaagaaaaaca-tttttaataga
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188856705 143 + 189454096 tagaaactctgcacacttaacctcagcttactgtaacatttttactttattaactttttgactgttttgtaagaacatctagctaaaaatgcaaacacattgtaccattgtacaagaatggaaagaaaaaca-tttttaataga
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178284871 143 + 178775436 TAGAAACTCTGCACACTTAAcctcagcttactgtaacatttttactttattaacttTTTGACTGTTTTGTAACAACATCTAgctaaaaatgcaaacacattGTACCATTGTacaagaatggaaagaaaaaca-tttttaagaga
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135227639 144 + 135778131 tagaaactctgcacacttaacctcagcttactgtaacatttttactttattaactttttgactgttttgtaagaacatctagctaaaaatgcaaacacattgtaccattgtacaagaatggaaagaaaaacattttttaataga
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87481596 142 - 129401213 I
e canFam3.chr16             17806925  34 -  59632846 I
e calJac3.chr3             190378865 1667 - 190850796 I

a score=75317.000000
s hg38.chr4_KI270925v1_alt     76942 45 +    555799 aagaaaaaca-ttttctctttctgttcttattttttcagacttt-------------------------tt
s panTro4.chr4             192776629 45 + 193495092 aagaaaaaca-ttttctctttctgttcttattttttcagacttt-------------------------tt
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113646892 45 + 115148730 aagaaaaaca-ttttctctttctgttcttattttttcagccttt-------------------------tt
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183477568 71 + 184069350 aagaaaaacatttttttctttctgttcttatcttttcaaccttttttgttttaactttttcttttttactt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188856848 71 + 189454096 aagaaaaacatttttttctttctgttcttatcttttcaaccttttttgttttaactttttcttttttactt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178285014 71 + 178775436 aagaaaaacatttttttctttctgttcttgtcttttcaaccttttttgttttaactttttcttttctactt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135227783 70 + 135778131 aagaaaaaca-ttttttctttctgttcttattttttcaaccttttttgttttaactttttcttttttactt
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87481596 142 - 129401213 I
e canFam3.chr16             17806925 34 -  59632846 I
e calJac3.chr3             190378865 1667 - 190850796 I
e ponAbe2.chr4             197881504 6080 + 198332218 I

a score=723419.000000
s hg38.chr4_KI270925v1_alt     76987 353 +    555799 taacttttt---ttttactttctacactgttttattaaaacttaagacacaaatacacacattagcctaggcctgcacagggccaggatcatcaacgtcactgtcttccacctccacatcttgtcccactggagggtcttcaggagccacaacacgcatggagctgccatctcctgtgatagcaacgcttcttttgcatacctcctgaaggatgtgacattttacagttaactgtttacacttaacttttttctaagagtaaaaggaaaacactctaaaataattata-aaagtatagtatagcaaatacacacagcagtaacacagctgtttatcatgat---caatttttatgtattg
s panTro4.chr4             192776674 356 + 193495092 aaactttttcttttttactttctacactgttttattaaaacttaagacacaaatacacacattagcctaggcctgcacagggccaggatcatcaacgtcactgtcttccacctccacatcttgtcccactggagggtcttcaggggccaaaacacgcatggagctgccatctcctgtgatagcaacacttcttttgcatacttcctgaaggacctgacattttacagttaactgtttacacttaacttttttctaaaagtaaaaggaaaacactctaaaataattata-aaagtatagtatagcaaatacacacagcagtaacacagctgtttatcatgat---caatttttatgtattg
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113646937 355 + 115148730 taacttttccttttttactttttacactgttttattaaaactgaagacacaaacacacacattagcctaggcctgcacagggccaggatcatcagtgtcactgtcttccacgtccacatcttgtcccactgaagggtcttcaggggccacaacacacatggagctgccatctcctgtgataggaatgcttc-tttgcatacctcctgaaggacctgacgttttacagttaactgtttacacttaacttttttctaaaagtaaaaggaaaatactctaaaataattata-aaggtatagtatagcaaatacacacagcagtaacacagctgtttatcatgat---caatttttatgtatta
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183477639 351 + 184069350 taaccttttcttttttactttttacactgttttgttaaaacttaagacacaaatacacatgttagcctcggcctgcacagggccaggatcatcaacatcactgtcttgcacctccacatgttgtcccactggagggtcgtcaggggccaccccacgcacggagctgtcgtctcctgtgagagcaatgcttccttcgcatacctcctgaagaacctgacattttacaattaactgtttacgcttaacgtttttctaaaagtaaaagcaaaatactctaaaataattata------atagtatagcaaatacacacagcagtaacacagctgtttatcatgat---cagtttttatctattg
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188856919 351 + 189454096 taactttttcttttttactttttacactgttttgttaaaacttaagacacaaatacacatgttagcctcggcctgcacagggccaggatcatcaacatcactgtcttgcacctccacatgttgtcccactggagggtcgtcaggggccaccccacgcacggagctgtcgtctcctgtgagagcaatgcttccttcgcatacctcctgaagaacctgacattttacaattaactgtttacgcttaacgtttttctaaaagtaaaagcaaaatactctaaaataattata------atagtatagcaaatacacacagcagtaacacagctgtttatcatgat---cagtttttatctattg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178285085 349 + 178775436 taactttttcttttttactttttacactgttttGTTAAAACTTAAGACACAAATACAC--GTTAGCCTCGGCCTGCACAGGGCCAGGATCATCAACACCACTGTCTTGCACCTCCACATGTTGTCCCACTGGAGGGTCGTCAGGGGCCAACACACGCACGGAGCTGTCGTCTCCTATGAGAGCAATGCTTCCTTCGCATACCTCCTGAAGAACCTGACATTTTACAATTAACTGTTTACGCTTAACgtttttctaaaagtaaaagcaaaatactctgaaataattata------atagtatAGCAAATACACACAGCAGTAACACAGCTGTTTATCATGAT---CAGTTTTTATCTATTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135227853 356 + 135778131 taactttttcttttttactttttacactgttttggtaaaacttaagacacaaatacacatgttagcctcggcctgcgcagggccaggatcatccacgtcactgtcttgtacctccacatgttgtcccactggagggtcgtcaggggccaccacacgcacggagctgtcgtctcctgtgagagcaatgcctccttcacatacctcctgaaggacctgacattttacaattaactgtttacgcttcacgtttttctaaaagtaagaggaaaatactctaaaataagtata-aaagtatagtatagcaaatacacacagcggtaacacagttgtttatcatgat---caGTttttatctattg
i chlSab2.chr7             C 0 I 392
s calJac3.chr3             190380532 330 - 190850796 tggcctctt---ttttactttttaaacttttttgttgaaagttaagacacaaatacgcatgctagcctgggcct--acagtgttggggccgtcagagtcactgtcttccacctccacgtcttgtcccgctgaacggccttcaggggcca--------------------tttcctgggatagcaacccttccttcgcct-----ccgaaggacctgacattttgcagttaacggtttccccttaacttttctttaaaagtaaagggaggatactctaaaataattagaaaaagtacagcatagcaaatacatacaacagtaacacagctgtttgttatcattggcaacttttacgtattg
i calJac3.chr3             I 1667 C 0
e mm10.chr8                 87481596 142 - 129401213 I
e canFam3.chr16             17806925  34 -  59632846 I
e ponAbe2.chr4             197881504 6080 + 198332218 I

a score=71198.000000
s hg38.chr4_KI270925v1_alt     77340 59 +    555799 tgtgtcattatagctgctacactgttatgtgaatggcaa-cgcagtaggtttgttcacac
s panTro4.chr4             192777030 59 + 193495092 tgtgtcattatagctgctacactgttatgtgaatggcaa-cgcagtaggtttgttcacac
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113647292 58 + 115148730 cgtgtcattatagctgctacacttcta-gtgaatggcaa-tgcagtaggtttgttcacac
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183477990 60 + 184069350 tgtgtcattataggtgctacacgtttctatgaatggcagctgcaggaggtttgttcacac
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188857270 60 + 189454096 tgtgtcattataggtgctacacgtttctatgaatggcagctgcaggaggtttgttcacac
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178285434 60 + 178775436 TGTGTCATTATAGGTGCTACACGTTTCTATGAATGGCAGGTGCAGGAGGTTTGTtcacac
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190380862 43 - 190850796 tatgttattcaatgtgctccact-----------------tgcggtaggtttgttcacag
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87481596 142 - 129401213 I
e canFam3.chr16             17806925 34 -  59632846 I
e chlSab2.chr7             135228209 392 + 135778131 I
e ponAbe2.chr4             197881504 6080 + 198332218 I

a score=432064.000000
s hg38.chr4_KI270925v1_alt     77399 198 +    555799 cagcatcaccacaaacgcgtgagtaatgtgttgtgctaagaccttcaggtgattacagtgtcataggccacaaacatt-ttcagctccattataatcacatggaaccacagtcatatacgcaggctgttgttgactgaagtgtccttatgcagtgcatgactgTACTAAGCTTAATAACCACCCATAGTCATTC--AGGGA
s panTro4.chr4             192777089 198 + 193495092 cagcatcaccacaaacgcgtgagtaatgtgttgtgctaagaccttcaggtgattacagtgtcataggccacaaacatt-ttcagctccattataatcacatggaaccacagtcatatacgcaggctgttgttgactgaagtgtccttatgcagtgcatgactgTACTAAGCTTAATAACCACCCATAGTCATTC--AGGGA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113647350 198 + 115148730 cagcatcaccacaaatgcgtgactaatgtgttgtgctaagaccttcaggaaattacagtgtcataggccacaaacatt-ttcagctccattataatcgcatggaaccacagtcatatacacaggccgttgttgactgaagtgttcttatgcagtgcatgaccgTACTAAGCTTAATAACTACCCACAGTCATTC--AGGGA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183478050 199 + 184069350 cagcatcaccacaagcacgtgagtaatgtgttgtgctgagaccttgagatgatcacaacgtcataggccacacgcattgctcagctcccttataatcgcatgggaccacagtcacatacccaggccgtggttgactgaagtgtcctcatccagtgcatgactgCACTAAGCTTCGTAACTACCCACAGTCATTC--AGGGA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188857330 199 + 189454096 cagcatcaccacaagcacgtgagtaatgtgttgtgctgagaccttgagatgatcacaacgtcataggccacacgcattgctcagctcccttataattgcatgggaccacagtcacatacccaggccgtggttgactgaagtgtcctcatccagtgcatgactgCACTAAGCTTCGTAACTACCCACAGTCATTC--AGGGA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178285494 199 + 178775436 cagcatcaccacaagcACGTGAGTAATGTGTTGTGCTGAGACCTTGAGATGATTACAATGTCATAGGCCACACACATTGCTCAGCTCCCTTATAATCGCATGGGACCACAGTCACATACCCAGGCCGTGGTTGACTGAAGTGTCCTCATCCAGTGCATGACTGCACTAAGCTTCGTAACTACCCACAGTCATTC--AGGGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7                549587 199 - 135778131 cagcatcaccacaagcacgtgagtagtgtgttgtgctgagaccttgagatgattacaacgccataggccacacacattgctcagctcccttataatcgcatgggaccacagtcacatacacaggccgtggttgactgaagtgtcctcatccagtgcatgactgCACTAAGCTTCATAACTACCCACAGTCATTC--AGGGA
i chlSab2.chr7             n 392 C 0
s calJac3.chr3             190380905 200 - 190850796 cagcatcaccaccaacacgggggtaatctgttgtgctaagaccttaagatggtt-cagtgtcgtaggccacaagcgttgctcagctccattataatcgcatggaaccacagtcatatatgcaggctgttcttgactgaagtgtccttacacggtgcacgactgAACTAAGCTTAGTAACTACCCATAGTCATTCAGAGAGA
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87481596 142 - 129401213 I
e canFam3.chr16             17806925  34 -  59632846 I
e ponAbe2.chr4             197881504 6080 + 198332218 I

a score=125514.000000
s hg38.chr4_KI270925v1_alt     77597 47 +    555799 GGGATGTCTTTCTTTTGGTCGCCCTGCCAACATGGTCAGCATTAGTT
s panTro4.chr4             192777287 47 + 193495092 GGGATGTCTTTCTTTTGGTCGCCCTGCCAACATGGTCAGCATTAGTT
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113647548 47 + 115148730 GGGATGTCTTTCTTTTGGTCGAGCTGGCAACATGGTCAGCATTAGTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183478249 47 + 184069350 GGGCTGTCTTTCTTTTGATCGCCCTGCCAACAGGGTCAGCATTAGTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188857529 47 + 189454096 GGGCTGTCTTTCTTTTGATCGCCCTGCCAACATGGTCAGCATTAGTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178285693 47 + 178775436 GGGCTATCTTTCTTTTGGTCACCCTGCCAACATGGTCAGCATTAGTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7                549786 47 - 135778131 GGGCTGTCTTTCTTTTGATCGCCCTGCCAACACGGTCAGCATTAGTT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190381105 47 - 190850796 GAGCTGCCTTTCTTTTGGCCGCCCTGCCAACATGGTCAGCATTACCT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17806959 47 -  59632846 GGGCTGCCTTTCTCTGGACAAACCTCCCAACTTGGACAGCATTAATT
i canFam3.chr16            I 34 I 1
e mm10.chr8                 87481596 142 - 129401213 I
e ponAbe2.chr4             197881504 6080 + 198332218 I

a score=35129.000000
s hg38.chr4_KI270925v1_alt     77644 19 +    555799 TGAGAATGCATTGAGGCTG--------
s panTro4.chr4             192777334 19 + 193495092 TGAGAATGCATTGAGGCTG--------
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113647595 19 + 115148730 TAAGAATGTATTGAGGCTG--------
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183478296 19 + 184069350 TAAGAATGCATTGAGGCTG--------
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188857576 19 + 189454096 TAAGAATGCATTGAGGCTG--------
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178285740 19 + 178775436 TAAGAATGCGTTGAGGCtg--------
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7                549833 18 - 135778131 TAAGAATGCATTGAGGCt---------
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190381152 27 - 190850796 TAATAATGCATGGAggctcggcgaggt
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87481596 142 - 129401213 I
e canFam3.chr16             17807006  1 -  59632846 I
e ponAbe2.chr4             197881504 6080 + 198332218 I

a score=234945.000000
s hg38.chr4_KI270925v1_alt     77663 84 +    555799 ggctcatgccagtaatcccaacactttgggaggccaaggtgggcagatcacttgaggtcaggagttcaagaccaacctggccaa
s panTro4.chr4             192777353 84 + 193495092 ggctcatgccagtaatcccaacactttgggaggccgaggtgggcagatcacttgaggtcaggagttcaagaccaacctggccaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197887584 84 + 198332218 ggctcacgccagtaatcccaacagtttaggaggctgaggtgggcagatcacttgaggtcaggagttcaagaccaacctggccaa
i ponAbe2.chr4             I 6080 C 0
s nomLeu3.chr7b            113647614 84 + 115148730 ggctcatgccagtaatcccaacactttgggaagccgaggtgggcagatcacttgaggtcaggagttcaagaccaacctggccaa
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183478315 84 + 184069350 ggctcacgccagcaatcccaacactttgggaggccgaggtgggcaggcatcttgaggtcaggggttcgagaccaacctggccaa
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188857595 84 + 189454096 ggctcacgccagcaatcccaacactttgggaggccgaggtgggcagacatcttgaggtcaggagttcgagaccaacctggccaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178285759 84 + 178775436 ggctcatgccagtaatcccaacactttgggaggccgaggtgggcagacatcttgagatcaggagttcgagaccaacctggccaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7                549851 74 - 135778131 ggctcacgccaggaatcccaacactttgggaggccga----------ccacttgaggtcaggagtttgagaccaacctggccaa
i chlSab2.chr7             C 0 n 0
s calJac3.chr3             190381179 84 - 190850796 ggctcaggcctgtaatcccaatcatttgggaggctgaggtgggaggatcatttagggtcaggagttcgagaccagcctggccaa
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87481596 142 - 129401213 I
e canFam3.chr16             17807006  1 -  59632846 I

a score=411962.000000
s hg38.chr4_KI270925v1_alt     77747 217 +    555799 catggtgaaaccccatctctactaaaaatacaaaaattatctgggtgtgatggcagactcctgtaatcacagc-tactcaggaggctgaggccagagaatcacttgaacccaggaggtggaggtggcagtgagccaagattgtgccactgtattccagcctgggcaacagagtgagactccaactcaaaaagcaaacaaacaaacaaacaaacaaaaa
s panTro4.chr4             192777437 217 + 193495092 catggtgaaaccccatctctactaaaaatacaaaaattatctgggtgtgatggcagactcctgtaatcacagc-tactcgggaggctgaggccagagaatcacttgaacccaggaggtggaggtggcagtgagccaagattgtgccactgtattccagcctgggcaacagagtgagactccaactcaaaaaacaaacaaacaaacaaacaaacaaaaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197887668 203 + 198332218 catggtgaaaccccatctctactaaaaatacaaaaattatctgggtgtggtggcagactcctgtaatcacagc-tactcgggagactgaggccagagaatcacttgaacccaggaggtggaggtggcagtgagccaagattgtgccagtgtactccagcctgggcaacagagtgagactccatctcaaaaa--------------aaaaaaaaaaaaa
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113647698 205 + 115148730 catggtgaaaccccatctctactaaaaatacaaaaattatctgggtatggtggcagactcctgtaatcacagcttactctggaggctgaggccagagaatcacttgaacccaggaggtggaggtggcagtgagccaagattgtgccactgtactccagcctgggcaacagagtgagactccatctcaaaaaa-------------aaaaaaaaaaaaa
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183478399 198 + 184069350 tatggtgaaatcctgtctctactaaaaatataaaaattatctgtgtgtggtgctgggcacctgtaatcccagc-tactcaggaggctgaggccagaggatcacttgaacccaggaggtggaggttgcagtgagccgagatcgcaccactgcactccagcctgggcagcagagtgagagtccatctcaaa----------------caagaaacaa---
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188857679 198 + 189454096 tatggtgaaatcccgtctctactaaaaatataaaaattatctgtgtgtggtggtgggcacctgtaatcccagc-tactcaggaggctgaggccagaggatcacttgaacccaggaggtagaggttgcagtgagccgagatcgcaccactgcactccagcctgggcagcagagtgagagtccatctcaaa----------------caagaaacaa---
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178285843 198 + 178775436 tatggtgaaatcccgtctctactaaaaatataaaaattatctgtgtgtggtggtgggcacctgtaatcccagc-tactcaggaggctgaggccagaggatcacttgaacccaagaggtggaggttgcagtgagccgagatcgcaccactgcactccagcctgggcagcagagtgagagcccatctcaaa----------------caagaaacaa---
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190381263 197 - 190850796 catggtgaacccctgtctctattaaaagtacaaaaatgatctgggcatgttggtgggcacttgtagtcctagc-tacttgggaggctgaggctggggaatc-cttgaactcaggaggtggaggttgcagtgagctgagaccgcgccactgcattccagcctgggtaacagagtgagactccgcctcaaa----------------aaaaaaaaaG---
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87481596 142 - 129401213 I
e canFam3.chr16             17807006   1 -  59632846 I
e chlSab2.chr7                549925   0 - 135778131 I

a score=313166.000000
s hg38.chr4_KI270925v1_alt     77964 159 +    555799 AAGAATGCATCGAATAACAGGATTAGTGCAGGCTGGAGGGGCTGACCAGCCTCATGCAAGTCTTGGCTCTGTCCCAGC----TTTGTGGTCCTGGGGATCTT------TCTCCTAAATCTC--TTAAATCAGTCCCAAAATAAGAGTTAATGCCATATATGACATAAAGTT
s panTro4.chr4             192777654 159 + 193495092 aaGAATGCATCGAATAACAGGATTAGTGCAGGCTGGAGGGGCTGACCAGCCTCATGCAAGTCTTGGCTCTGTCCCAGC----TTTGTGGTCCTGGGGATCTT------TCTCCTAAATCTC--TTAAATCAGTCCCAAAATAAGGGTTAATGTCATATATGACATAAAGTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197887871 159 + 198332218 aagaaTGCATTGAATAACAGGATTagtgcaggctggaagggctgaccagcctcatgcaagtcttggctctgtcacagc----tttatggtcctggggatctt------tctcctaaatctc--ttaaatcagttccaaaataagggttaatgccatatatgacataacgtt
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113647903 149 + 115148730 aagaaTGCATTGAG---------TAGTGCAGGCTGGAAGGGCTGACCAGCCTCATGCAAGTCTTGGCTCTGTCACA-C----TTTATGGTCCCGGGGATCTT------TCTCCTAAATTTC--TTAAATCGGTCCCAAAATAAGGGTTAATGCCATATATGACATAACGTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183478597 148 + 184069350 ------------aTTagcaggactagtgcaggctggaaggactgagcagcctcatgcaagtcttggctctgtcacagc---ttttatggtcctggggatctt------tctcctaaatcag--tttcctcagtcccaaaatgaggattaataccatataggacataaaggt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188857877 148 + 189454096 ------------aTTAGCAGGACTAGTGCAGGCTGGAAGGACTGAGCAGCCTCATGCAAGTCTTGGATCTGTCACAGC---TTTTATGGTCCTGGGGATCTT------TCTCCTAAATCAG--TTTCCTCAGTCCCAAAATGAGGATTAATACCATATAGGACATAAAGGT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178286041 148 + 178775436 ------------attagCAGGACTAGTGCAGGCTGGAAGGACTGAGCAGCCTCATGCAAGTCTTGACTCTGTCACAGC---TTTTATGGTCCTGGGGCTCTT------TCCCCTAAATCAG--TTTCCTCAGTCCCAAAATGAGGATTAATACCATATAGGACATAAAGGT
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190381460 139 - 190850796 -------CACTGAAGAACAGGACCAGCGCAGGCTGGAAGGGCTGAGCAGCCACG-------------TCTGTCACAGC----TTTGTGACCCTCTGGATCTT------TCTCCTAGATCGC--TTTCCTCAGTCCCAAAATAAGGATTTATGGCATATTTGGCATAATGTT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17807007 163 -  59632846 AAGAATGTAT--------ATGACTagtagaggctggaaagtctgaacagacagaaccaagtcttcattctgtcactacaagttgtgtggccttagggatgtttcttaatctcctggatctcagtttccccaccaccaaaataaagactaatatcacatatgctataaagtg
i canFam3.chr16            I 1 C 0
e mm10.chr8                 87481596 142 - 129401213 I
e chlSab2.chr7                549925   0 - 135778131 I

a score=345968.000000
s hg38.chr4_KI270925v1_alt     78123 169 +    555799 TTTAAGTACTatataaaatattaaataat--------aattattttaaatattaaata-------------------ataattattt-ta-aattaacttaaaatTCTACATGA---ATCTATTTATAAGTTCTGAAATAATGTAAAAAGGTAAAGAATGGTCTTTATGTTATTATCATTAT--TGCC-CCAAG-TTAATATAAA
s panTro4.chr4             192777813 165 + 193495092 TTTAAGTACtatataaaatattaaataat--------aattattttaaatattaa-----------------------taattattt-ta-aattaacttaaaattCTACATGA---ATCTATTTATAAGTTCTGAAATAATGTAAAAAGGTAAAGAATGGTCTTTATGTTATTATCATTAT--TGCC-CCAAG-TTAATATAAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197888030 164 + 198332218 tttgagtactatataaaatattaaataat--------tattattttaaatattaaata-------------------ataattattt-ta-aattaacttaaaattCCAAATGA---ATCTATTTATAAGTTCTGAAATAATGTAA------AAAGAATGGTTTTGATGTTATTATCATTAT--TGCCTTCAAG-TTAATATAAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113648052 170 + 115148730 TTTGAGTACTatataaaatattaaataat--------tattattttaaatattaaata-------------------ataattattt-ta-aattaacttaaaatTCTACATGA---ATCTATTTATAAGTTCTGAAATAATGTAAAAAGGTAAAGAATGGTTTTTATGTTATTTTCATTAG--TACCTCCAAG-TTAATATAAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183478745 165 + 184069350 tttgagtaatatataaaa-attatataat--------aattattttaaacattaaata-------------------ataattattt-ta-aattaacttaaaattCTTCATGA---ATC----TATAAGTTCTGAAATGATGTAAAAAGGTAAAGAATGGTCTTTATGTTATTATCATTAT--TGTCTCCAAG-TTAATATAAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188858025 165 + 189454096 TTTGAGTAATATATAAaa-attatataat--------aattattttaaacattaaata-------------------ataattattt-ta-aattaacttaaaATTCTTCATGA---ATC----TATAAGTTCTGAAATGATGTAAAAAGGTAAAGAATGGTCTTTATGTTATTATCATTAT--TGTCTCCAAG-TTAATATAAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178286189 165 + 178775436 TTtgagtaatatataaaa-attacataat--------aattattttaaacattaaata-------------------ataattattt-ta-aattaacttaaaattctGCATGA---ATC----TATAAGTTCTGAAATGATGTAAAAAGGTAAAGAATGGTCTttatgttattatcattat--tgtctCCAAG-TTAATATAAA
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190381599 164 - 190850796 TTTGAATACtatataaaatatta---aat--------aattattttaaatattaa-ta-------------------ataattaCTT-CA-AATTAACTTAAAATTCTACATGA---ATCTACTTGTAAGTCCTAAAATAAGGTAAAAAGGTAAAGA--GGTCTTTACATTATTATCAGTAT--TGTCTCCAAG-CTGATACAAA
i calJac3.chr3             C 0 I 684
s mm10.chr8                 87481738 172 - 129401213 TCCAAATGCTGTTAAGAATGTTAACTAATCCCCCAGGGATTTTCTCAGCACTTAAATAAAGGCATCCACGtatatttataagtatttgtataattaaataataattCAACAATACACACCCATTCATAAGTTCTAAAACCATATAAAAAGTTAAAGA---------ACGTTA------------------------TAGAATAAA
i mm10.chr8                I 142 C 0
s canFam3.chr16             17807170 116 -  59632846 ---------------------------------------------------ttag----------------------agaattattt-ta------------aaatttatatgg---atacatttataagctctaaacaatattaaaaaggtaaagaatGGCATTTTTGTTGTTGCAATTATTATGTCTGCAAGCTTAATAGGAA
i canFam3.chr16            C 0 C 0
e chlSab2.chr7                549925   0 - 135778131 I

a score=2054961.000000
s hg38.chr4_KI270925v1_alt     78292 808 +    555799  
s panTro4.chr4             192777978 808 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197888194 809 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113648222 806 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183478910 822 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188858190 822 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178286354 817 + 178775436  
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190382447 870 - 190850796  
i calJac3.chr3             I 684 C 0
s mm10.chr8                 87481910 674 - 129401213  
i mm10.chr8                C 0 I 2130
s canFam3.chr16             17807286 722 -  59632846  
i canFam3.chr16            C 0 C 0
e chlSab2.chr7                549925   0 - 135778131 I

a score=374021.000000
s hg38.chr4_KI270925v1_alt     79100 149 +    555799 GACCATTGGTTACAATGTCTGTAAAGAGTGACTTTACTCACGTGACACATCAAACCCTTCCAGTGTGTGAGAAAATGAGAAAAAAGAAAAGTGTCTAAGAATAAATATAGGAC-TGCTATATCTTGCAAATA--TCAAAAAAGAATAGTATC
s panTro4.chr4             192778786 149 + 193495092 GACCATTGGTTACAATGTCTGTAAAGAATGACTTTACTCACGTGACACATCAAACCCTTCCAGTGTGTGAGAAAATGAGAAAACAGAAAAGTGTCTAAGAATAAATATAGGAC-TGCTATATCTTGCAAATA--TCAAAAAAGAATAGTATC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197889003 149 + 198332218 GACCATTGGTTACAACATCTGTAAAGAGTGACTTTACTCACATGACACATCAAACCCTTCCAGTGTGTGAGAAAATGAGAAAACAGAAAAGTGTCTATGAATAAATATAGGAC-TGCTATATCTTGCAAATA--TCAAAAAAGAATAGTATC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113649028 132 + 115148730 GACCATTGGTTACAACGTCTGCAAAGAGTGACTTTACTCACGTGACACGTCAAACCCTTCTGGTGTGTGAGAAAATGAGAAAACAGAAAAGTGTCTATGA------------------ATATCTGGCAAATA--TCAAAAAAGAATAGCATC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183479732 149 + 184069350 GACCATTGGTTACAATGTCTGTAAAAAGTGACTTTACTCACATGACACATCAAACCCTTCCAGTGTGTGAGAAAATGAGAAAACAGAAAAGTGTCTATGAATAAATAGAGGAC-TGCTATATCCTGCAAAGA--TCAAAAAAGAATCCTATC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188859012 149 + 189454096 GACCATTGGTTACAATGTCTGTAAAAAGTGACTTTACTCACGTGACACATCAAACCCTTCCAGTGTGTGAGAAAATGAGAAAACAGAAAAGTGTCTATGAATAAATAGAGGAC-TGCTATATCCTGCAAAGA--TCAAAAAAGAATCCTATC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178287171 149 + 178775436 GACTATTGGTTACAATGTCTGTAAAAAGTGACTTTACTCACATGACACATCAAACCCTTCCAGTGTctgagaaaatgagaagacagaaaagtgTCTATGAATAAATAGAGGAC-TGCTATATCCtgcaaaga--tcaaaaaagaatcCTATC
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190383317 150 - 190850796 GACCATTGGTTACAACCTCTGCAAATAGTGACTTTACTCACATTACACATCAAACCCTTCCAGTGTGTGAGAAAATGAGAAAACAGAAAAGTGTCTGAGAATAAATACAGGACTTGCTACAAGTTGCAAATA--CCGAACATGAATAGTATC
i calJac3.chr3             C 0 I 286
s canFam3.chr16             17808008 147 -  59632846 AACCATTGGTTAAAACATCTGTGAAGAATAAGTTCACTCACATGACACATAAAACCCTTTCAG----TAAGAAAATGTGAAAGTAGAGGAGTGTCTAAGAATAAATAATACAT-TGCTACAAGTTGGAAATGCCCCAAAACAGAATTGTAAC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87482584 2130 - 129401213 I
e chlSab2.chr7                549925   0 - 135778131 I

a score=165635.000000
s hg38.chr4_KI270925v1_alt     79249  89 +    555799 AAAGCTGG----------GTCTATTTG------ACCTTGGCTATGGCTGCTGATGCCATTCACATCAGACTATAGATTG--------------TTCATCAAAGTTAAGCAAACATACTG
s panTro4.chr4             192778935  89 + 193495092 AAAGCTGG----------GTCTATTTG------ACCTTGGCTATGGCTGCTGATGCCATTCACATCAGACTATAGATTG--------------TTCATCAAAGTTAAACAAACATACTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197889152  89 + 198332218 AAAGCTGG----------GTCTATTTG------ACATTGGCTATGGGTACTGATGCCATTCACATCAGACTATAGACTG--------------TTCATCAGAGTTAGGCAAACATACTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113649160  87 + 115148730 AAAGCTGG----------GTCTATTTG------ACCTTGGCTGTGGCTGCCGATGCCATTCACATCAGAC--TAGATTG--------------TTCATCAAAGTTAAGCAAACATATTG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183479881  89 + 184069350 AAAGCTGG----------GTCTATTTG------ACCTTGGCTATGGCTGCTGATGCCATTCACATCAGACTATAGATTG--------------TTCATCCAAGTTGAGCAAACATGCTG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188859161  89 + 189454096 AAAGCTGG----------GTCTATTTG------ACCTTGGCTATGGCTGCTGATGCCATTCACATCAGACTATAGATTG--------------TTCATCCAAGTTGAGCAAACATGCTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178287320  89 + 178775436 AAAGCTGG----------GTCTATTTG------ACCTTGGCTATGGCTGCTGATGCCATTCACATCAGACTACAGATTG--------------TTCATCCAAGTTAAGCAAACATGCTG
i papAnu2.chr5             C 0 C 0
s canFam3.chr16             17808155 118 -  59632846 AAAGCCTGTTTTTTGTTTGTTTGTTTGTTTTTTACTGTATCTAGGGCTGCTGATATCA-TAACATCAGATCATAGTTTAGCAACATATTATATCTTACTAATACCAAGAGAATATATTA
i canFam3.chr16            C 0 I 679
e mm10.chr8                 87482584 2130 - 129401213 I
e calJac3.chr3             190383467 286 - 190850796 I
e chlSab2.chr7                549925   0 - 135778131 I

a score=710127.000000
s hg38.chr4_KI270925v1_alt     79338 407 +    555799 TGTAAAATAGTTGCTTAATTTATTTGAGCCTTGGTCGATCGCTCACTGAAAAAACTTCTGAAATCTCTGCTATGTGTACAGCATTCCACACGCCTTATGTTAGCTGGTAACCCTCTGTCTCTTTAGGGCTTGTGGTGAGAGTCAAATGTGTATGTTGCTATATATTCTTAACTGTCAACTGCTGAAGAATGTCAGGATGAAGTCCTAAGACTGGAGATGGGGAGAGCTTAGCAGCTATTGATGAAATATTGATGAAAAAACTACACATTTCTAGTTTGGTCTAACCAACATATAAAGATctagtatagtgcctactacacagtatgtactgaatatatatctgtggaatcaatgaatGTATTGATTCATGAGAGTATCTGTTTACTCAGAATCTTTCAGTAGTAATT
s panTro4.chr4             192779024 407 + 193495092 TGTAAAATAGTTGCTTAATTTATTTGAGCCTTGGTCGATCGCTCACTGAAAAAACTTCTGAAATCTCTGCTATGTGTACAGCATTCCACATGCCTTATGTTAGCTGGTAACCCTCTGTCTCTTTAGGGCTTGTGGTGAGAGTCAAATGTGTATGTTGCTATATATTCTTAACTGTCAACTGCTGAAGAATGTCAGTATGAAGTCCTAAGACTGGAGATGGGGAGAGCTTAGCAGCTATTGATGAAATATTGATGAAATAACTACACATTTCTAGTTTGGTCTAACCAAGATATAAAGATctagtatagtgcctactacagagtgtgtactgaatatatacctgtggaatcaatgaatGTATTGATTCATGAAAGTGTATGTTTACTCAGAATCTTTCAGTAGTAATT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197889241 407 + 198332218 TGTAAAATAGTTGCTTAATTTATTTGAGCCTTGGTCGATCCCTCAGTGAAAAAACTTCTGAAATCTCTGCTGTGTGTACAGCATTCCACATGCCTTATGTTAGCTGGTAACCCTCTATCTCTTTAGGGCTTGTGGTGAGAGTCAAATGTGTATGTTGCTATATATTCTTAACTGTCAACTGCTGAAGAATGTCAGTATGAAGTCCTAAGATGGGAGATGGGGAGAGCTTAGCAGCTATTGATGAAAAATTGATGAAATAACCACACTTTTCTAGTTTGGTCTAACCAAGATATAAAGATctagtatagtgcctaccacagagtatgtactgaatatatatctgtggaatcaatgaatGTATTGATTCATGAGAGTATATGTTTGCTCAGAATCTTTCAGTAGTAATT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113649247 407 + 115148730 TGTAAAATAGTTGCTTAATTTATTTGAGCCTTGGTCGATAGCTCAGTGAAAAAACTTCTGAAATCTCTGCTGTGTGTACAGCATACCACATGCCTTATGTTAGCTGGTAAccctctatctctttagggcttgttgtgagagtcaaatgtgtatgttgctatatattcttaactgtcaactgctgaagaatgtcagTATGAAGTCCTAAGACTGGAGATGGGGAGAGCTTAGCAGCTATTGATGAAATATTGATGAAATAACCACACATTTCTAGTTTGGTCTAACCAAGATATAAAGATctagtatagtgcctaccacagagtatgtactgaatatgtatctgtggaatcgatgaatGTATTGATTCATGACAGTATATGTTTGCCCAGAATCTTTCAGTAGTAATT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183479970 396 + 184069350 TGTAAAATAGTTGCTTAATTTATTTGAGCCTTGGTTGATCGCTCAGGGAAAAACCTTCTGAAATCTCCCCTGTGTGTACAGCATTCCACCTGCCTTGTGTTCGCTGGTAAGCctctgcctcttcagggcttgttgtgagagtcagatgagtatgttgctgtatattcttaactgtcaactgctgaagaatgtcagTATGAAGTCCTAAGACTGGAGATGGGGAGAGCTTAGCAGC-----------TATTGATGAAATAACCACATTTTTCTACTTTGGTCTAACCAAGATATAAAGATctagtatagtgcctaccacagaatatgtacttaacagatatctgtggaatcaatgaatGTATTGATTAATGAGAGTATATGTTTGCTCAGAATCTTTCAGTAGTAATT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188859250 396 + 189454096 TGTAAAATAGTTGCTTAATTTATTTGAGCCTTGGTTGATCGCTCAGGGAAAAACCTTCTGAAATCTCCCCTGTGTGTACAGCATTCCACCTGCCTTGTGTTCGCTGGTAAGCCTCTGCCTCTTCAGGGCTTGTTGTGAGAGTCAGATGAGTATGTTGCTGTATATTCTTAACTGTCAACTGCTGAAGAATGTCAGTATGAAGTCCTAAGACTGGAGATGGGGAGAGCTTAGCAGC-----------TATTGATGAAATAACCACATTTTTCTACTTTGGTCTAACCAAGATATAAAGATctagtatagtgcctaccacagaatatgtacttaacagatatctgtggaatcaatgaatGTATTGATTAATGAGAGTATATGTTTGCTCAGAATCTTTCAGTAGTAATT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178287409 407 + 178775436 TGTAAAATAGTTGCTTAATTTATTTGAGCCTTGGTTGATCGCTCAGGGAAAAACCTTCTGAAATCTCCCCTGTGTGTACAGCATTCCACCTGCCTTGTGTTAGCTGGTAAGCCTCTGCCTCTTCAGGGCTTGTTGTGAGAGTCAGATGAGTATGTTGCTGTATATTCTTAACTGTCAACTGCTGAAGAATGTCAGTATGAAGTCCTAAGACTGGAGATGGGGAGAGCTTAGCAGCTATTGATGAAATATTGATGAAATAACCACATTTTTCTACTTTGGTCTAACCAAGATATAAAGATCTAGTATAGTGCCTACCACAGAATATGTACTTAACAGATATCTGTGGAATCAATGAATGTATTGATTAATGAGAGTATATGTTTGCTCAGAATCTTTCAGTAGTAATT
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87482584 2130 - 129401213 I
e canFam3.chr16             17808273 679 -  59632846 I
e calJac3.chr3             190383467 286 - 190850796 I
e chlSab2.chr7                549925   0 - 135778131 I

a score=97823.000000
s hg38.chr4_KI270925v1_alt     79745 42 +    555799 AAGAATGGCACCTCATTATTTCTATACATACCTCATTATTAC
s panTro4.chr4             192779431 42 + 193495092 AAGAATGGCACCTCATTATTTCTATACATACCTCATTATTAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197889648 42 + 198332218 AAGAATGGCACCTCATTATTTCTATACATACCTCATTATTAC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113649654 42 + 115148730 AAGAATGGCACCTCATTAGTTCTATACATACCTGATTATTAC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183480366 42 + 184069350 AAGAATGGCACCTCATTATTTTTATACACACCTCATTATTAC
i rheMac3.chr5             C 0 I 1
s macFas5.chr5             188859646 42 + 189454096 AAGAATGGCACCTCATTATTTTTATACACACCTCATTATTAC
i macFas5.chr5             C 0 I 1
s papAnu2.chr5             178287816 42 + 178775436 AAGAATGGCACCTCATTATTTTTATACACACctcattattac
i papAnu2.chr5             C 0 I 1
s calJac3.chr3             190383753 40 - 190850796 aagaaTGGCACCTCATTATTTTTGTACACACCTCATTATT--
i calJac3.chr3             I 286 C 0
e mm10.chr8                 87482584 2130 - 129401213 I
e canFam3.chr16             17808273 679 -  59632846 I
e chlSab2.chr7                549925  0 - 135778131 I

a score=82779.000000
s hg38.chr4_KI270925v1_alt     79787 31 +    555799 TTTTT-TATAAAACTGATGAATTCAAATGGTG
s panTro4.chr4             192779473 32 + 193495092 TTTTTATATAAAACTGATGAATTCAAATGGTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197889690 32 + 198332218 TTTTTATATAAAACTGATGAGTTCAAATGGTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113649696 32 + 115148730 TTTTTATAAAAAACTGATGAGTTCAAATGGTG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183480409 31 + 184069350 -TTTTATATAAAACTGATGAGTTCAACTGGTG
i rheMac3.chr5             I 1 C 0
s macFas5.chr5             188859689 31 + 189454096 -TTTTATATAAAACTGATGAGTTCAACTGGTG
i macFas5.chr5             I 1 C 0
s papAnu2.chr5             178287859 31 + 178775436 -ttttatataaaACTGATGAGTTCAACTGGTG
i papAnu2.chr5             I 1 C 0
s chlSab2.chr7             135228601 31 + 135778131 -TTTTATATAAAACTGATGAGTTCAGATGGTG
i chlSab2.chr7             I 392 C 0
s calJac3.chr3             190383793 31 - 190850796 -TTTCATATTAAAGGGATGCATTCAAGTGGTG
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87482584 2130 - 129401213 I
e canFam3.chr16             17808273 679 -  59632846 I

a score=2889397.000000
s hg38.chr4_KI270925v1_alt     79818 1039 +    555799  
s panTro4.chr4             192779505 1056 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197889722 1027 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113649728 1024 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183480440 1044 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188859720  994 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178287890  995 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135228632 1001 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190383824 1033 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17808952  989 -  59632846  
i canFam3.chr16            I 679 C 0
e mm10.chr8                 87482584 2130 - 129401213 I

a score=250058.000000
s hg38.chr4_KI270925v1_alt     80857 62 +    555799 ---TTTGGAAGCCAACAACTGAGCTATTTAATCCATGAAAATATTTTTGAAAGCAATTCTTTTGC
s panTro4.chr4             192780561 62 + 193495092 ---TTTGGAAGCCAACAACTGAGCTATTTAATCCATGAAAATATTTTTGAAAACAATTCTTTTGC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197890749 62 + 198332218 ---TTTGGAAGCCAACAATTGAGCTATTTAATCCATGAAAATATTTTTTAAAACAATTCTTTTGC
i ponAbe2.chr4             C 0 I 1401
s nomLeu3.chr7b            113650752 62 + 115148730 ---TTTGGAAGCCAACAACTGAGCTATTTAATCCATGAAAATATTTTTGAAAACAATTATTTTGC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183481484 62 + 184069350 ---TTTAGAAGCCAACAACTGAGCTATTTAATCAACAAAAATATTTTTGATAACAATTCTTTTGC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188860714 62 + 189454096 ---TTTGGAAGCCAACAACTGAGCTATTTAATCAATGAAAATATTTTTGATAACAATTCTTTTGC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178288885 62 + 178775436 ---TTTGGAAGCCAACAACTGAGCTATTtaatcaatgaaaatatttttgataacaaTTCTTTTGC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135229633 62 + 135778131 ---TTTGGAAGCCAACAACTGAGCTATTTAATCAATGAAAATATTTTTGATAACAATTCTTTTGC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190384857 62 - 190850796 ---TTTGGAAGCCAACAACAGAGCTATTTAATCCATGAAAATATTTTTGAAAACAATTATTTTGC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87484714 61 - 129401213 ---TCTGGGAGCCAACAAGTAAGCTCTTTAACTTGTG-AAATATCTTGGAAATAACTTATTTTCC
i mm10.chr8                I 2130 C 0
s canFam3.chr16             17809941 65 -  59632846 TCATCTGGAAGCCTGCAACTGAGCTCTTTAATCCATGAAAATATTTTTGAAAAAGATTATCTTGC
i canFam3.chr16            C 0 C 0

a score=1798303.000000
s hg38.chr4_KI270925v1_alt     80919 586 +    555799  
s panTro4.chr4             192780623 587 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197892212 579 + 198332218  
i ponAbe2.chr4             I 1401 C 0
s nomLeu3.chr7b            113650814 577 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183481546 583 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188860776 604 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178288947 585 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135229695 586 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190384919 506 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87484775 592 - 129401213  
i mm10.chr8                C 0 I 103
s canFam3.chr16             17810006 575 -  59632846  
i canFam3.chr16            C 0 C 0

a score=248413.000000
s hg38.chr4_KI270925v1_alt     81505 74 +    555799 AAATCAGTGAATTCATTTGAAAAGATATATAAATACAAAATTGGCAGATGATAGCACTGTGCTAGCAAA-CAAAG
s panTro4.chr4             192781210 74 + 193495092 AAATCAGTGAATCCATTTGAAAAGATATATAAATACAAAATTGGCAGATGATAGCACTGTGCTAGCAAA-CAAAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197892791 74 + 198332218 AAATCAGTAAATCCGTTTGAAAAGATATATAAATACAAAATTGGCAGATGATAGCACTGTGCTAGCAAA-CGAAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113651391 74 + 115148730 AAATCAGTGAATCCATTTGAAAAGATATATAAATACAAAATTGGCAGATGATAGCACTGTGCTAGCAAA-CAAAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183482129 74 + 184069350 AAATCAGTGAATCCATTTGAAAAGATATATAAATACAAAATTGGCAGATGATAGCACTGGGCTAGCAAA-CAAAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188861380 74 + 189454096 AAATCAGTGAATCCATTTGAAAAGATATATAAATACAAAATTGGCAGATGATAGCACTGGGCTAGCAAA-CAAAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178289532 74 + 178775436 AAATCAGTGAATCCAtttgaaaagatatataaatacaaaattggcaGATGATAGCACTGGGCTAgcaaa-caaag
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135230281 74 + 135778131 AAATCAGTGAATCCATTTGAAAAGATATATAAATACAAAATTGGCAGATGATAGCACTGGGCTAGCAAA-CAAAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190385425 75 - 190850796 GAAGCAGTGAATCCATTTGGAAAGATAAATAAATACAAAATTGGCAGATGACAGCGCTGTGGTAGCAAAGCAAAG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17810581 66 -  59632846 ----CAGTGAGTTCACTTGAGAAAATATGAATGTGT----TTGTCAAATTACAGGTCTGTGCTAGAAAa-gagag
i canFam3.chr16            C 0 I 15
e mm10.chr8                 87485367 103 - 129401213 I

a score=278745.000000
s hg38.chr4_KI270925v1_alt     81579 85 +    555799 GAGAAAAAT---CAGGTTTAATGAATAGAAGCTTTACGGAAGGTTTAGCCAGAAACTGCCACGCTAGTTTCTTTTGGTCAACACGTCT
s panTro4.chr4             192781284 85 + 193495092 GAGAAAAAT---CAGGTTTAATGAATAGAAGCTTTACGGAAGGTTTAGCCAGAAACCGCCACGCTAGTTTCTTTTGGTCAACACGTCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197892865 85 + 198332218 GAGAAAAAT---CAGGGATAATGAATAGAAGCTTTACAGAAGGTTTAGCCAGAAACTGCCACGCTAGGTTATTTTGGTCAACACGTCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113651465 85 + 115148730 GAGAAAAAT---CAGGTATAATGAATAGAAGCTTTACAGAAGGTTTAGCCAGAAACCGCCACGCTAGTTTCTTTTGGTCAACACGTCT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183482203 85 + 184069350 GAGAAAAAT---CAAGTATAATGAATAGAAGCTTTTTGGAAGGTTTAGCCAGAAACCGCCACGCTAGGTTCTTTTGGTCAACAAGTCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188861454 85 + 189454096 GAGAAAAAT---CAAGTATAATGAATAGAAGCTTTTTGGAAGGTTTAGCCAGAAACCGCCACGCTAGGTTCTTTTGGTCAACATGTCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178289606 85 + 178775436 gagaaaaat---caagtaTAATGAATAGAAGCTTTTTGGAAGGTTTAGCCAGAAACCGCCACGCTAGGTTCTTTTGGTCAACACGTCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135230355 85 + 135778131 GAGAAAAAT---CAAGTATAATGAATAGAAGCTTTTTGGAAGGTTTAGCCAGAAACCGCCACGCTAGGTTCTTTTGGTCAACACGTCT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190385500 68 - 190850796 GAGAGAAAT---AAAAAATAACCAATAGAGGCTTCATAGCA-ATTCAGCCAG----------------TTTCCTTGGTCCGCGCGTCT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87485470 83 - 129401213 GAAAGACAT---CAACTACAGAGAAT-GAAACTATATGGAGGGTTTGGCCAGAAACTGCTATTTGAGTTCCTCATGA-CAGCACATTT
i mm10.chr8                I 103 I 6707
s canFam3.chr16             17810662 87 -  59632846 gagagaAGTGAAGAAGTATTATGAATGGTAGCTTTATGGAA-GTTTAGCCAGAAACTGCCATGTTAGGTCCTTATGGATAAAACATCT
i canFam3.chr16            I 15 C 0

a score=1407393.000000
s hg38.chr4_KI270925v1_alt     81664 488 +    555799  
s panTro4.chr4             192781369 486 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197892950 476 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113651550 486 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183482288 483 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188861539 483 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178289691 483 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135230440 484 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190385568 447 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17810749 524 -  59632846  
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87485553 6707 - 129401213 I

a score=301214.000000
s hg38.chr4_KI270925v1_alt     82152 104 +    555799 TTTTGTTTACACTTTCTAT----GATTTCTTTTACTACTGGATCTTTAAA------ATAT-ATATAT--CAAAAGCCTGGTTCGCTTTATTTCCTTTTCAACTCAGACATCAttttc---
s panTro4.chr4             192781855 103 + 193495092 TTTTGTTCACACTTTCTAT----GATTTCTTTTACTACTGGATCTTTAAA------ATAT-ATGTAT--CAAAAGCCTG-TTCGCTTTATTTCCTTTTCGACTCAGACATCATTTTC---
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197893426 104 + 198332218 TTCTGTTTACACTTTCTGT----GATTTCTTTTACTACTGGATCTTTAAA------ATGT-ATATGT--CAAAAGGCTGGTTCGTTTTATTTCCTTCTCAACTCAGACATtattttc---
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113652036 104 + 115148730 TTTTGTTTACACTTTCTAT----GATTTCTCTTACTACTGGATCTTTAAA------ATAT-ATATAT--CAAAAGGCTGGttcgttttatttccttctcaactcagacatcattttc---
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183482771 106 + 184069350 CTTTGTTTACACTTTCTAT----GATTTCTTTTACTACTGGATCTTTAAA------ATAT-ATATATACCAAAAGGCTGGTTCGTTTTATTTCCTTTTCAACTCAGACATTATTTTC---
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188862022 106 + 189454096 CTTTGTTTACACTTTCTAT----GATTTCTTTTACTACTGGATCTTTAAA------ATAT-ATATATACCAAAAGGCTGGTTCGTTTTATTTCCTTTTCAACTCAGACATTAttttc---
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178290174 106 + 178775436 CTTTGTTTACActttctat----gatttcttttactactggatctttaaa------atat-atgtataccaAAAGGCTGGTtcgttttatttccttttcaactcagacattattttc---
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135230924 112 + 135778131 CTTTGTTTACCCTTTCTAT----GATTTCTTTTACTACTGGATCTTTAAAatatatatat-atatatatCAAAAGGCTGGTTCGTTTTATTTCCTTTTCAACTCAGACACTAttttc---
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190386015  98 - 190850796 TTTTGTCTACACTTTCTTC----GGTTTCTT-------TGGATCCTTAAA------ATATGATCTAT--CAAAAGACTGGCTGCTTTTATTCCCCTTTCAACTCAGACATtactttc---
i calJac3.chr3             C 0 I 126
s mm10.chr8                 87492260 110 - 129401213 TCTTACTTCCACTTACTATCTTAGTCTTATCCTCCTACTGTTCCTTTATT------CTTC-ATCTTTGCCTACATCTTCTCCTGTCCCATTCTCtcttccttttctcattcattctc---
i mm10.chr8                I 6707 C 0
s canFam3.chr16             17811273  96 -  59632846 -----TTTGGGTTTTCCAT----GATTTCTTTTACTCTTAGTCCTTTTAT-------TAT-AT------CAAAATGCTA-TTGTTCTTATATCCTTTTAAACTCAGACACAGTCTTTTGT
i canFam3.chr16            C 0 C 0

a score=1090758.000000
s hg38.chr4_KI270925v1_alt     82256 332 +    555799 ttccttctcccttcttttcatttcttttctttttctcttctttcttgtcttctgcctcttcct-ttctccttctctttctccttcttcatcctgtttgccttgccttcttcctcctcctcttcctctttctc---ctctgc---ttctctctctctttttccc-ctct--cttcctctccctctacctAAATCCAAAATTGTAGCAGAAGTGTTTATGTTGGTGTCAAAAGGTCATGTTAGTGGTGAGATTTTGACTGACAGTTGTCAATTCTGGTGAGAGCCTATAGAGTGGACTTGAAATTGGGTTTGTGACTATAGCATGCTGACTCACAAAAGAAGAA
s panTro4.chr4             192781958 330 + 193495092 TTCCTTCTCCcttcttttcatttcttttctttttctcttctttcttgtcttctgcctcttcct-ttctccttctctttctccttcttcatcctgtttgccttgccttcttcctcctcctcttcctctttctc---ctctgc---ttctctctctctttttccc-ctct----tcctctccctctACCTAAATCCAAAATTGTAGCAGAAGTGTTTATGTTGGTGTCAAAAGGTCATGTTAGTGGTGAGATTTTGACTGACAGTTGTCAATTCTGGTGAGAGCCTATAGAGTGGACTTGAAATTGGGTTTGTGACTATAGCACACTGACTCACAAAAGAAGAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197893530 332 + 198332218 ttccttctcccttcttttcatttcttttctttttctcttctgtcttgtcttctgcctcttcct-ttctcctttgctttctccttcttcgtcctgtttgccttgccttcttcctcctcctctccctctttctc---ctctgc---ttctctctctcttTTTCCC-CTCT--CTTCCTCTCCCTCTACCTAAATCCAAAATTGTAGCAGAAGTGTTTATGTTGGTGTCAAAAGGTCACGTTAGTGCTGAGATTTTGACTGACAGTTGTCAGTTCTGGTGACAGCCTGTAGAGTGGACTTGAAATTGGGTTTGTGATTACGGCACGCTTACTCATAAAAGAAGAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113652140 320 + 115148730 ttccttctcccttcttttcatttcttttctttttc------------tcttctgcctcttcct-ttctccttctctttctccttcttcatcctgtttgccttgcgttcttcctcctcctctccctctttctc---ctctgc---ttttctctctctttttcac-ctct--cttcctctccctctAGCTAAATCCAAAATTGTAGCACAAGTGTTTATGTTGGTGTGAAAAGGTCATATTAGTGGTGAGATTTTGACTGACAGTTGTCAATTCTGGTGAAAGCCTATAGAGTGGACTTGAAATTGGGTTTGTGATTATAGCATGCTGACTCACAAAAGAAGAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183482877 334 + 184069350 TTTCTTCTCGCTTGTTTTCATttcttttctttttctcttctatcttgtcttctgcctcttcct-ttctccttctctttctccttcttcatcctgtttgccttgccttcttcctcctcctctccctctttctc---ctctgc---ttctctctctctttttccc-ctctctcttcctctCTCTCTACCTAAATCCAAAATTGTAGCAGAAGTGTATATATTGGTGTAAAAAGGTCATATTAGTGGTGAGATTTTTATTGACGGTTATCAATTCTGGTGACAGCCTATAAAGTGGACTTGAAATTGGTTTTGTGATTATAGCATTCCGACCCAAAAAAGAAGAA
i rheMac3.chr5             C 0 I 27
s macFas5.chr5             188862128 334 + 189454096 ttccttctcgcttgttttcatttcttttctttttctcttctatcttgtcttctgcctcttcct-ttctccttctctttctccttcttcatcctgtttgccttgccttcttcctcctcctctccctctttctc---ctctgc---ttctctctctctttttccc-ctctctcttcctctctctctACCTAAATCCAAAATTGTAGCAGAAGTGTTTATATTGGTGTAAAAAGGTCATATTAGTGGTGAGATTTTTATTGACGGTTATCAATTCTGGTGACAGCCTATAAAGTGGACTTGAAATTGGTTTTGTGATTATAGCATTCCGACCCAAAAAAGAAGAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178290280 334 + 178775436 ttccttctcgcttgttttcatttcttttctttttctcttctttcttgtcttctgcctcttcct-ttctccttctctttctccttcttcatcctgtttgccttgccttcttcctcctcctctccctctttctc---ctctgc---ttctctctctctttttccc-ctctctcttcctctctctctaccTAAATCCAAAATTGTAGCAGAAGTGTTTATATTGGTGTAAAAAGGTCATATTAGTGGTGAGATTTTTACTGACAGTTATCAATTCTGGTGACAGCCTATAGAGTGGACTTGAAATTGGTTTTGTGATTATAGCATTCCGacccaaaaaagaagaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135231036 334 + 135778131 ttccttctcccttcttttcatttcttttctttttctcttctttcttgtcttctgcctcttcct-ttctccttctctttctccttcttcatcccgtttgccttgccttcttcctcctcctctccctctttctc---ctctgc---ttctttctctctttttccc-ctctctcttcctctccctctacctAAATCCAAAATTGCAGCAGAAGTGTTTATACTGGTGTAAAAAGGTCATGTTAGTGGTGAGATTTTGACTGACAGGTGTCAATTCTGGTGACAGCCTATAGAGTGGACTTGAAATTGGTTTTGTGATTATAGCACTTTGACCCAAAAAAGAAGAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190386239 330 - 190850796 ttctttctcccttcttttcATTTCTTTCCTATTTCTCTT---TCTTGTCATCTGCCTCTTCCT-TTCTCCTTCT-----TTCTCCTTCATCCTGTTTGCCTTGCCTtcttcctcctcctccccctcttcctc---ctcctcctGTtctctctttctttctccctctctcttttcctctGCCGTTACCTAGATCAAAGATTATACCAGAAGTGTTTATATTGGTGTAAAAAGGCCATGTTAATGGTAAGATTTTGACTGACAGTTGTCAATTCTGGTGAGATCATGTAGAGTGGACTTGAAATTGGATTTGTGGTTATAGCACTTTAACTCAAAAAGAAAGAA
i calJac3.chr3             I 126 C 0
s mm10.chr8                 87492370 246 - 129401213 -ctcctcttcctcctcctcctcctcttcctcctcctcctcctccccttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttctt--------cttcttcctctctctctctctctctctctctctctct---ctctctctctctctctctctctctctccccctctcccgctctcca---tcaaaattatacccaaaatgagtatcc------atcaaggtcctgttagtgtcttgattttg---------------------------------------------------------------------------cacaatataAGCA
i mm10.chr8                C 0 C 0
s canFam3.chr16             17811369 285 -  59632846 TCCTTTCTACCTTCTTTCTAGTT-TTCTAGTCTTCTCTtctcccttgtcctctccccctcccc-tcc-----ctctctctccttctacctcc---------------cctactcctgctccctGCCTTTCTT---TCCTCC---TCGTCCCTATCTTTCTCTC------------------------TAAAAACAAAATTATATCAGAAGTACCTGTACTGATTTAGAAAGATCATGTTATTGGTAAGATCTTGGCTGACAATTGTCAATTCTGGCAAGATCCTTTAGTGTGAGCTTGAAATTGAGTTAGTGATTATAGCACTCCAACTCAGTAGAA-----
i canFam3.chr16            C 0 C 0

a score=7644.000000
s hg38.chr4_KI270925v1_alt     82588 3 +    555799 ata
s panTro4.chr4             192782288 3 + 193495092 ata
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197893862 3 + 198332218 ata
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113652460 3 + 115148730 ATA
i nomLeu3.chr7b            C 0 C 0
s chlSab2.chr7             135231370 3 + 135778131 ATA
i chlSab2.chr7             C 0 I 21
s calJac3.chr3             190386569 3 - 190850796 ATA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87492616 3 - 129401213 ATA
i mm10.chr8                C 0 C 0
s canFam3.chr16             17811654 3 -  59632846 ATA
i canFam3.chr16            C 0 C 0
e papAnu2.chr5             178290614 0 + 178775436 C
e macFas5.chr5             188862462 0 + 189454096 C
e rheMac3.chr5             183483211 27 + 184069350 I

a score=-31059.000000
s hg38.chr4_KI270925v1_alt     82591 54 +    555799 gatatatatatatttatatttatatttttatatttttatatataattctttttC
s panTro4.chr4             192782291 46 + 193495092 gatatatatatatttatatttatatttttatat--------ataATTTTTTTTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197893865 43 + 198332218 gatatatctatttttata--tatatttttatat--------at-atattttTTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113652463 16 + 115148730 GATATATATAT------------------------------AT--------TTT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188862462 26 + 189454096 -----ATATGTGTTTTGTTTTGTTTTTTCCC-----------------------
i macFas5.chr5             C 0 I 1
s papAnu2.chr5             178290614 26 + 178775436 -----atatgtgctttgttttgttttttttc-----------------------
i papAnu2.chr5             C 0 I 3
s calJac3.chr3             190386572 11 - 190850796 --------------------AGTTTTTCTTT-----------------------
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87492619 16 - 129401213 --------------TAGGTTTTTTTTTCTT------------------------
i mm10.chr8                C 0 C 0
s canFam3.chr16             17811657 13 -  59632846 -----------------AAAGATTTTATTC------------------------
i canFam3.chr16            C 0 C 0
e chlSab2.chr7             135231373 21 + 135778131 I
e rheMac3.chr5             183483211 27 + 184069350 I

a score=13095.000000
s hg38.chr4_KI270925v1_alt     82645 3 +    555799 CTG
s panTro4.chr4             192782337 3 + 193495092 CTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197893908 3 + 198332218 CTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113652479 3 + 115148730 CTG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183483238 3 + 184069350 CTG
i rheMac3.chr5             I 27 C 0
s macFas5.chr5             188862489 3 + 189454096 CTG
i macFas5.chr5             I 1 C 0
s papAnu2.chr5             178290643 3 + 178775436 ctg
i papAnu2.chr5             I 3 C 0
s calJac3.chr3             190386583 3 - 190850796 CTG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87492635 3 - 129401213 CTG
i mm10.chr8                C 0 C 0
s canFam3.chr16             17811670 3 -  59632846 CTG
i canFam3.chr16            C 0 C 0
e chlSab2.chr7             135231373 21 + 135778131 I

a score=1079360.000000
s hg38.chr4_KI270925v1_alt     82648 291 +    555799 GGCCAGCCTAGAGGTGAAAGCAGTTGATC-ACAAGGCCAGATCATGCCATCTGGATTCTTCTAAAAAGGTACAGAATTAATAAACAGGAAGATTTACAAATCCTAGTACTGGACATTTTCCAATTCTAAAAATTGCTTATTTTTTCTTTGCTAGTGACATTTTTT-TCAATGTAAAATTACCATGAACATTAGGAAATATTGTATGCAAATAGCACTCGAGGAGAAACAC----TTATCATCCAACTTCTGAATTTATTATTCAGGGGAAATAAAAATGTAAATTGATTGCAAATAA
s panTro4.chr4             192782340 291 + 193495092 GGCCAGCCTAGAGGTGAAAGCAGTTGATC-ACAAGGCCAGATCATGCCATCTGGATTCTTCTAAAAAGGCACAGAATTAATAAACAGGAAGATTTACAAATCCTAGTACTGGACATTTTCCATTTCTAAAAATTGCTTATTTTTTCTTTGCTAGTGACATTTTTT-TCAATGTAAAATTACCAGGAACATTAGGAAATATTGTATGCAAATAGCACTCGAGGAGAAACAC----TTATCATCCAACTTCTGAATTTATTATTCAGGGGAAATAAAAATGTAAATTGATTGCAAATAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197893911 291 + 198332218 GGCCAGCCTAGAGGTGAAAGCAGTTGATC-ACAAGGCCAGATCATGCTATCTTGATTCTTCTAAAAAGGTACAGAATTAATAAACAGGAAGATTTACAAATCCTAGTACTGGACATTTTCCAATTCTAAAAATTGCTTATTTTTTCTTTGCTAGTGACATTTTTT-TCAATGTAAAATTACCATGAACATTAGGAAATATTGTATGCAAACAGCACTTGAGGAGAAACAC----TTATCATCCAACTTTGGAATGTATTATTCAGGGGAAATAAAAATGTAAACTGATTGCAAATAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113652482 290 + 115148730 GGCCAGCCTAGAGGTGAAAGCAGTTGATC-ACAAGGCCAGATCATGCCATTTGGATTCTTCTAAAAAGGTACAGAATTAATAAACAGGAAGATTTACAAATCCTAGTACTGGACATTTTCCAATTCTAAAAATTGTTTATTTTTTCTTTGCTAGTGATA-TTTTT-TCAATGTAAAATTACCATGAACATTAGGAAATATTGTATGCAAATAGCACTCGAGGAGAAACAC----TTATTATCCAACTTCTGAATTTATTATTCAGGGGAAATAAAAATGTAAATTGATTGCAAATAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183483241 291 + 184069350 GACCAGCCTATAGGTGAAAACAGTTGATC-ACAAGGCCAGATCATGCCATTTGGATTCTTCTAAAAAGGTACAGAATTAATAAACAGGAAGATTTACAAATCCTAGTATTGGACATTTTCCAATTCCAAAAATTGCTTATTTTTTCTTTGCTAGTGACATTTTTT-TCAATGTAAAATTACCAAGAACATTAGAAAATACTGTATGCAAATAGCACTGGAGGAGAAACAC----TCATCATCCAACTTCTGAATTTATTATTCAGGGGAAATAAAAATGTAAATTGATTGCAAATAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188862492 291 + 189454096 GACCAGCCTATAGGTGAAAACAGTTGATC-ACAAGGCCAGATCATGCCATTTGGATTCTTCTAAAAAGGTACAGAATTAATAAACAGGAAGATTTACAAATCCTAGTATTGGACATTTTCCAATTCCAAAAATTGCTTATTTTTTCTTTGCTAGTGACATTTTTT-TCAATGTAAAATTACCAAGAACATTAGGAAATACTGTATGCAAATAGCACTGGAGGAGAAACAC----TCATCATCCAACTTCTGAATTTATTATTCAGGGGAAATAAAAATGTAAATTGATTGCAAATAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178290646 291 + 178775436 ggcCAGCCTATAGGTGAAAACAGTTGATC-ACAAGGCCAGATCATGCCATTTGGATTCTTCTAAAAAGGTACAGAATTAATAACCAGGAAGATTTACAAATCCTAGTATTGGACATTTTCCAATTCcaaaaattgcttattttttctttgctagtgacatttttt-tcaatgtaaaattACCAAGAACATTAGGAAATACTGTATGCAAATAGCACTGGAGGAGAAACAC----TCATCATCCAACTTCTGAATTTATTATTCaggggaaataaaaatgtaaattgattgCAAATAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135231394 290 + 135778131 GGCCAGCCTACAGGTGAAAGCAGTTGATC-ACAAGGCCAGATCATGCCATTTGGATTCTTCTAAAAAGGTACAGAATTAATAAACAGGAAGATTTACAAATCCTAGTATTGGACATTTTCCAATTCCAAAAATTGCTTATTTTTTCTTTGCTAGTGACA-TTTTT-TCAATGTAAAATTACCGAGAACATGAGGAAATACTGTCAGCAAATAGCACTGGAGGAGAAACAC----GCATCATCCAACTTCTGAATTTATTATTCAGGGTAAATAAAAATGTAAACTGATTGCAAATAA
i chlSab2.chr7             I 21 C 0
s calJac3.chr3             190386586 291 - 190850796 GGCAAGCCCATAGGTGAAAGCAATTGATC-ACAAGGTCAGATCATGCCATTTGGATTCTTCTAAAAAGGAACAAAATTAATAAACAGGAAGATTTACAAATTCCAGTATTGAATATTTTCCAATTCCAAAAATAGCTTATTCTTTCTTTGCTAGTCACATTCTTT-TCAACATAAAATTACCATGAACATTAGGAAACATTGTATGCAAACAGCACTCAAAAAGAAACAC----TTGTCATCCAACTTCTGAATTTATTATTCAGAGGAAATAAAAATGTAAATTGATTGCAAATAA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87492638 266 - 129401213 GGCTATGCTGCATCTGAGAGCAGCAAGTC-ACAGTAACAGGTAACACTACCAGGATTCTTCTGAAAAAGAATGCAAGTGATGAACAG----------AACCCACAGAATTAG---------GGTTTAGAACTTTACCTATTTCTCCTTTACCAATGACATTTTTCAACAGAAAAAAATCACCATAATCATTAGACAATATTAGATGCAAATAGCATTCAAGAAGAAACAC----T----ATTCAAGATTTCAATTTACTATTCAG---AAGCAAAAATGTAAATAGTTTGCAAATAG
i mm10.chr8                C 0 C 0
s canFam3.chr16             17811673 271 -  59632846 GGCAAGCCTATAGATAAAAGAAGTGTATCTACAATACCAGGTGATGCCACTGGAATTCTTCTGAAAAGGAAAAGAAATGATGAACAAAGCAATTTCTAAACACTAGTATTAG-----------------AGTTTGCTTATTTTTCCTTTGCTAG--------CTC-TCAACATAAAATCACCCTGAATGTTAGGAAATATTATATGTAAACAGTATTCAAGAAAAAAACCATTTTCACTGGTCAACTTCTGAGTTTACTATATAGAGGAAAGAAAAATGAAAATTAATTGCAAATGA
i canFam3.chr16            C 0 I 195

a score=448054.000000
s hg38.chr4_KI270925v1_alt     82939 120 +    555799 AGCTGCCAATTAAACTTATAAA---TTTTTCAAAT-ATTCCTGTGATGACAGAGGCAAAAGCTTTTTTCCATTTTAATTTACTTATACTCTGAACAAAACAGAAGCCATGCTACAGAGGAGCAT
s panTro4.chr4             192782631 120 + 193495092 AGCTGCCAATTAAACTTATAAA---TTTTTCAAAT-ATTCCTGTGATGACAGAGGCAAAAGCTTTTTTCCATTTTAATTTACTTATACTCTGAACAAAACAGAAGCCATGCTACAGAGGAGCAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197894202 120 + 198332218 AGCTGCCAATTAAACTTATAAA---TTTTTCAAAT-ATTCCTGTGATGACAGAGGCAAAAGCTTTTTTCCTTTTTAATTTACTTATACTCTGAACAAAACAGAAGCCATGCTACAGAGGAGCAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113652772 120 + 115148730 AGCTGCCAATTAAACTTATAAA---TTTTTCAAAT-ATTCCTGTGATGACAGAGTCAAAAGCTTTTTTCCTTTTTAATTTACTTATATTCTGAACAAAACAGAAGCCATGCTACAGAGGAGCAT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183483532 120 + 184069350 ATCTGCCAATTAAACTTATAAA---TTTTTCAAAT-ATTCCTCTGATGACAGAGGCAAAAGCTTTTTTCCTTTTTAATTTACTTATATTCTGAACAAAACAGAAGCCATGCAACAGAGGGGCAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188862783 120 + 189454096 ATCTGCCAATTAAACTTATAAA---TTTTTCAAAT-ATTCCTCTGATGACAGAGGCAAAAGCTTTTTTCCTTTTTAATTTACTTATATTCTGAACAAAACAGAAGCCATGCAACAGAGGGGCAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178290937 120 + 178775436 ATCTGCCAATTAAACttataaa---tttttcaaat-attcctgtgatgacagaggcaaaagcttttttcctttttaatttacttatattCTGAACAAAACAGAAGCCATGCAACAGAGAGGCAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135231684 120 + 135778131 AGCTGCCAATTAAACTTATAAA---TTTTTCAAAT-ATTCCTGTGATGACAGAGGCAAAAGCTTTTTTCCTTTTTAATTTACTTATGTTCTGAACAAAACAGAAGCCATGCAACAGAGGAGCAT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190386877 120 - 190850796 AGCTGCCAATTAAACTTATAAA---TTTTCCTAAT-ATTCCTGTGATGACAGAGGCGAAAGCTTTTTTCTTTTTTAGTTCACTTATATTCTGAACAAAACAGAAGCCCTGTTACAGAGGAGCAT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87492904 122 - 129401213 AGGTGCCAATTAAACTTTCAAAATGTTTTTTAAATGAATCCTGCAGCAGCAGAAGTATGGACTATTTTTGTATTTAATTTATTCAGA--ATACACACAATAGAAATCATTTTTTAAAAAGACAT
i mm10.chr8                C 0 I 58
s canFam3.chr16             17812139 118 -  59632846 AGCTGCCACTTAGCCTCCAAAA-TATTTTTTAAAT-AATCATGTGGTGATAAAGGCATA----TTTTTTCTATTTAATTTAATAAGATTCTAAACACAATAAAGCCCATATTACAAAGAAGCAT
i canFam3.chr16            I 195 C 0

a score=28359.000000
s hg38.chr4_KI270925v1_alt     83059 7 +    555799 CAGGCAA
s panTro4.chr4             192782751 7 + 193495092 CAGGCAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197894322 7 + 198332218 CAGGCAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113652892 7 + 115148730 CAGGCAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183483652 7 + 184069350 CAGGCAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188862903 7 + 189454096 CAGGCAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178291057 7 + 178775436 CAGGCAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135231804 7 + 135778131 CAGGCAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190386997 7 - 190850796 CAGGCAA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17812257 7 -  59632846 CAGGAAA
i canFam3.chr16            C 0 I 86
e mm10.chr8                 87493026 58 - 129401213 I

a score=141989.000000
s hg38.chr4_KI270925v1_alt     83066 58 +    555799 ----------GAAAAACAAGAGGTAGAGTGATGAAAGTTAAAATCAACGTGTTTCTTTCAT-gccagac
s panTro4.chr4             192782758 58 + 193495092 ----------GAAAAACAAGAGGTAGAGTGATGAAAGTTAAAATCAACGTGTTTCTTTCAT-gccagat
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197894329 54 + 198332218 ----------GAAAAACAAGAGGTA----GATGAAAGATAAAATCAATGTGTTTCTTTCAT-gccagac
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113652899 58 + 115148730 ----------GAAAAACAAGAGGTAGAGTGACGAAAGTTAAAATCAATGTGTTCCTTTCAC-gccgggt
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183483659 57 + 184069350 ----------G-AAAACTAGAGGTAGAGTGATGAATGTTAAAATCAATGTGTCTCTTTCAT-gcctggc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188862910 57 + 189454096 ----------G-AAAACTAGAGGTAGAGTGATGAATGTTAAAATCAATGTGTCTCTTTCAT-gcctggc
i macFas5.chr5             C 0 I 111
s papAnu2.chr5             178291064 58 + 178775436 ----------GAAAAACTAGAGGTAGAGTGATGAATGTTAAAATCAATGTGTCTCTTTCAT-GCCTGGc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135231811 58 + 135778131 ----------GAAAAACAACAGGTAGAGTGATGAATGTTAAAATCAATGTGTTTCTTTCAT-gcctggc
i chlSab2.chr7             C 0 I 55
s calJac3.chr3             190387004 69 - 190850796 TATTATGCAGGAAAAACGAGAGTTAGAGTGATGAGTGTTAAAATCAATTTCTTTCTTTCATCgccgggc
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87493026 58 - 129401213 I
e canFam3.chr16             17812264 86 -  59632846 I

a score=137605.000000
s hg38.chr4_KI270925v1_alt     83124 45 +    555799 gcggtggctcatgcctgtaatcccagcactttgggaggccgaggc
s panTro4.chr4             192782816 45 + 193495092 gcggtggctcacgcctgtaatcccagcactttggggggccgaagc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197894383 45 + 198332218 gcggtggctcacgcctgtaatcccagcactttgggaggccgaggc
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113652957 45 + 115148730 gcggtggctcaggcctgtaatcccagcactttgggaggccgaggc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183483716 44 + 184069350 -gggcagctcacgcctgtaatcccagcactttgggaggccgaggc
i rheMac3.chr5             C 0 I 516
s macFas5.chr5             188863078 45 + 189454096 gcggtggctcacacctgtaatcccagcactttgggaggccgaggc
i macFas5.chr5             I 111 C 0
s papAnu2.chr5             178291122 44 + 178775436 -gggcagctcacgcctgtaatcccagcactttgggaggccgaggc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135231924 45 + 135778131 gcagtggctcacacctgtaatcccagcactttgggaggccgagga
i chlSab2.chr7             I 55 C 0
s calJac3.chr3             190387073 45 - 190850796 gcggtggctcacacctgtaatcccagcactttgggaggctgaggc
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87493026 58 - 129401213 I
e canFam3.chr16             17812264 86 -  59632846 I

a score=94371.000000
s hg38.chr4_KI270925v1_alt     83169 42 +    555799 aggtggatcacttgaggtcaggagtacgagaccagcctgacc
s panTro4.chr4             192782861 42 + 193495092 aggtggatcatttgaggtcaggagtacgagaccagcctgacc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197894428 42 + 198332218 aggtggaccacttgaggtcaggagtatgagaccagcctgacc
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113653002 42 + 115148730 aggtgggtcacttgaggtcaggagtacgagaccagcctgacc
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188863123 42 + 189454096 aggtgaatcacttgaggtcaggagtaccagaccagcctgacc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178291166 42 + 178775436 aggtgaatcacttgaggtcaggagtcccagaccagcctgacc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135231969 42 + 135778131 aggtggatcacttgaggtcaggagtcccagaccagcctgacc
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190387118 42 - 190850796 gggtggatcacctgaggtcaggaggtcaggaacagcctggcc
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87493026 58 - 129401213 I
e canFam3.chr16             17812264 86 -  59632846 I
e rheMac3.chr5             183483760 516 + 184069350 I

a score=82337.000000
s hg38.chr4_KI270925v1_alt     83211 31 +    555799 aacatggtgaaatcccatctctactaaaaat
s panTro4.chr4             192782903 31 + 193495092 aacatggtgaaatcccatctctactaaaaat
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197894470 31 + 198332218 aacatgatgaaatcccatctctactaaaaat
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113653044 31 + 115148730 aacatggtgaaatcccatttctactaaaaat
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188863165 31 + 189454096 aacatggtgaaatcccatctctactaaaaat
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178291208 31 + 178775436 aacatggtgaaatcccatctctactaaaaat
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135232011 31 + 135778131 aacatggtgaaatcccatctctactaaaaat
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190387160 31 - 190850796 aacatggtgaaatcccatctttactaaaagt
i calJac3.chr3             C 0 I 313
s canFam3.chr16             17812350 31 -  59632846 aacaggagagactcctaactctgggaaataa
i canFam3.chr16            I 86 C 0
e mm10.chr8                 87493026 58 - 129401213 I
e rheMac3.chr5             183483760 516 + 184069350 I

a score=34709.000000
s hg38.chr4_KI270925v1_alt     83242 14 +    555799 acaaaaattagctg
s panTro4.chr4             192782934 14 + 193495092 acaaaaattagctg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197894501 14 + 198332218 acaaaaattagctg
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113653075 14 + 115148730 acaaaaattagccg
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188863196 14 + 189454096 acaaaaattagctg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178291239 14 + 178775436 acaaaaattagctg
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135232042 14 + 135778131 gtaaaaattagctg
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190387504 14 - 190850796 aaaaaaattagcca
i calJac3.chr3             I 313 C 0
s canFam3.chr16             17812381 14 -  59632846 acaaagggtagtag
i canFam3.chr16            C 0 I 173
e mm10.chr8                 87493026 58 - 129401213 I
e rheMac3.chr5             183483760 516 + 184069350 I

a score=299583.000000
s hg38.chr4_KI270925v1_alt     83256 149 +    555799 ggtgcggtggcaggtgcctgtaatcccagctactcgggagactgaggcaggaagaatcacttgaacctgg-gaggcagaggttgcagtgagccaagatcgcaccactgcactccagcctaggtgacagagcaagactccatctcaaaaa----------a
s panTro4.chr4             192782948 149 + 193495092 ggtgcagtggcaggtgcctgtaatcccagctactcgggagactgaggcaggaagaatcacttgaacctgg-gaggcagaggttgcagtgagccaagatcgcaccactgcactccagcctgggtgacagagcaagactccatctcaaaaa----------a
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197894515 149 + 198332218 ggtgcggtggcaggtgcctgtaatcccagctactcgggagactgaggcaggaagaatcacttgaacctgg-gaagcagaggttgcagtcagccaaactcgcaccactgcactccagcctgggtgacagagcgagactccatctcaaaaa----------a
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113653089 147 + 115148730 ggtgcagtggcaggtgcctgtaatcccagctactccggagactgaggcaggaagaatcacttgaatctgg-gaggcagaggttgcagtgagccaagatcgcaccactgcactccagcctgggtgac--agtgagactccacctcaagaa----------a
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188863210 148 + 189454096 ggtttggtggtgcacacctataatcccagctactcgggaggctgaggcaggaagaattacttgaacctgg-gaggcgaaggttgcggtgatccaagattacaccactgcactccagcctgggcgacagagcgagactccatctcaaaa-----------g
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178291253 156 + 178775436 ggtttggtggcgcacacctataatcccagttactcgggagactgaggcaggaagaatcacttgaaccggg-gaggcggaggttgcagtgatccaagatcgtgccactgcactccagcctgggcgacagagcgagactccatctcaaaaa---caaaaaca
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135232056 156 + 135778131 ggcttggtggcgcacgcctataatcccagctacttgggagactgaggcaggaagaatcacttgaacctgg-gaggcagaggttgcggtgatccaagatcgcaccactacactccagcctgggcgacagaacaagactccatctcaaaaa---caaaaaca
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190387518 159 - 190850796 ggcatagcagcgtgtacctgtaatcttagctacttgggagactgaggcaggaagaatcactggaacccaatgagatggaagttgcagtcagccgagatcacaccactgtactccag-ctgggccaaagagaaagactccatctcagaaaaaaaaaaaaaa
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87493026  58 - 129401213 I
e canFam3.chr16             17812395 173 -  59632846 I
e rheMac3.chr5             183483760 516 + 184069350 I

a score=4755.000000
s hg38.chr4_KI270925v1_alt     83405  9 +    555799 aaaaaa----aa--T
s panTro4.chr4             192783097 11 + 193495092 aaaaaa----aaaaT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197894664 11 + 198332218 aaaaaa----aaaaT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113653236 11 + 115148730 TATATA----TGTAT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188863358 11 + 189454096 aaaaca----aaaac
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178291409 11 + 178775436 aaaaca----aaaac
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135232212 15 + 135778131 aaaacaaaacaaaac
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190387677 11 - 190850796 aaaaaa----aaaaT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17812568  9 -  59632846 AAAATC----AAT--
i canFam3.chr16            I 173 C 0
e mm10.chr8                 87493026 58 - 129401213 I
e rheMac3.chr5             183483760 516 + 184069350 I

a score=-12158.000000
s hg38.chr4_KI270925v1_alt     83414 2 +    555799 CT-
s panTro4.chr4             192783108 2 + 193495092 CT-
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197894675 2 + 198332218 CT-
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113653247 2 + 115148730 AT-
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188863369 1 + 189454096 a--
i macFas5.chr5             C 0 I 33
s papAnu2.chr5             178291420 1 + 178775436 a--
i papAnu2.chr5             C 0 I 22
s chlSab2.chr7             135232227 1 + 135778131 a--
i chlSab2.chr7             C 0 I 5
s calJac3.chr3             190387688 2 - 190850796 CT-
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87493084 1 - 129401213 -C-
i mm10.chr8                I 58 I 1
s canFam3.chr16             17812577 2 -  59632846 -CT
i canFam3.chr16            C 0 C 0
e rheMac3.chr5             183483760 516 + 184069350 I

a score=4294858.000000
s hg38.chr4_KI270925v1_alt     83416 1017 +    555799  
s panTro4.chr4             192783110 1017 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197894677 1012 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113653249 1017 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183484276 1016 + 184069350  
i rheMac3.chr5             I 516 C 0
s macFas5.chr5             188863403 1017 + 189454096  
i macFas5.chr5             I 33 C 0
s papAnu2.chr5             178291443 1017 + 178775436  
i papAnu2.chr5             I 22 C 0
s chlSab2.chr7             135232233 1014 + 135778131  
i chlSab2.chr7             I 5 C 0
s calJac3.chr3             190387690  989 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87493086 1045 - 129401213  
i mm10.chr8                I 1 I 353
s canFam3.chr16             17812579 1032 -  59632846  
i canFam3.chr16            C 0 C 0

a score=776068.000000
s hg38.chr4_KI270925v1_alt     84433 229 +    555799 ATTATGAATTTCAAAGCCTGAGTTCTTAGAGAAAAGGTGCATGAGTTAAAAACCATGATGACAATCAAT----AATATATGATAATACATGAA-TAACAAAATGT-C-CCCAGACTCAATAATGTGGTTACTCTTAGT----------AGATACG----------------------------------------------CACTGAAGACCATGGT--------------------------GATTCAAATTCTATA----TCCTGCCTGAGAAATGTCAACAAGGGATCTGATGTAATGCGCACAATTGTCTTTTACATG
s panTro4.chr4             192784127 229 + 193495092 ATTATGAATTTCAAAGCCTGAGTTCTTAGAGAAAAGGTGCATGAGTTAAAAACCATCATGACAATCAAT----AATATATGATAATACATGAA-TAATAAAATGT-C-CCCAGACTCAATAATGTGGTTACTCTTAGT----------AGATACG----------------------------------------------CATTGAAGACCATGGT--------------------------GATTCAAATTCTATA----TCCTGCCTGAGAAATGTCAACAAGGGATCTGATGTAATGCACACAATTGTCTTTTACATG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197895689 229 + 198332218 ATTATGAATTTCAAAGCCTGAGTTCTTAGAGAAAAGGTGCATGAGTTAAAAACCATGATGACAATCAAT----AATATATGATAATACATGAA-TAATAAAATGT-C-CCCAGACTCAATAATGTGGTTACTCTTAGT----------AGATACG----------------------------------------------CATTGAAGACCATGGT--------------------------GATTCAAATTCTATA----TCCTGCCTGAGAAATGTCAACAAGGGATCTGATGTAATGCACACAATTGTCTTTTACATG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113654266 229 + 115148730 ATTATGAATTTCAAAGCCTGAGTTCTTAGAGAAAAGGTGCATGAGTTAAAAACCATGATGACAATCAAT----AATATATGGTAATACATGAA-CAATAAAATGT-C-CCCAGACTCAATAATGTGGTTACTCTTAGT----------AGATACG----------------------------------------------CATTGAAGACCATGGT--------------------------GATTCAAATTCTATA----TCTTGCCTGAGAAACGTCAACAGGGGATCTGATGTAATGCACTCAATTGTCTTTTACATG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183485292 228 + 184069350 ATTATGAATTTCAAAGCCTGAGTGCTTAGAGAAAAGGTGCATGAG-TAAAAACCATGATGACAATCAAT----AATATATGATAATACATGAG-TAATAAAATGT-C-CCCAGACTCAAGAATGTGGTTGCTATTAGT----------AGATATG----------------------------------------------CAACGAAGATTATGGT--------------------------TATTCAAATTCTATA----TCCTGCCTGAGAAATGTCAACAAGGAATCTGATGTAATGCACACAATTGTCTTTTACATG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188864420 228 + 189454096 ATTATGAATTTCAAAGCCTGAGTGCTTAGAGAAAAGGTGCATGAG-TAAAAACCATGATGACAATCAAT----AATATATGATAATACATGAG-TAATAAAATGT-C-CCCAGACTCAAGAATGTGGTTGCTATTAGT----------AGATATG----------------------------------------------CAATGAAGATTATGGT--------------------------TATTCAAATTCTATA----TCCTGCCTGAGAAATGTCAACAAGGAATCTGATGTAATGCACACAATTGTCTTTTACATG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178292460 228 + 178775436 ATTATGAATTTCAAAGCCTGAGTGCTTAGAGGAAAGGTGCATGAG-TGAAAACCATGATGACAATCAAT----AATATATGATAATACATGAA-TAATAAAATGT-C-CCCAGACGCAAGAATGTGGTTGCTATTAGT----------AGATATG----------------------------------------------CAATGAAGACCATGGT--------------------------TGTTCAAATTCTATA----TCCTGCCTGAGAAACGTCAACAAGGAAACTGATGTAATGCACACGATTGTCTTTTACATG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135233247 228 + 135778131 ATTATGAATTTCAAAGCCTGAGTGCTTAGAGAAAAGGTGCATGAG-TGAAAACCatgatgacaatcaat----aatatatgataatacatgaa-taataaaatGT-C-CCCAGACGCAAGAATGTGTTTACTATTAGT----------AGATATG----------------------------------------------CATTGAAGACCATGGT--------------------------TATTCAAATTCTATA----TCCTGCCTGAGAAATGTCAACAAGGAATCTGATGTAATGCATACAATTGTCTTTTACATG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190388679 229 - 190850796 ATTATGAATTTCAAAGCCTGAATGCTTACAGAAAAGGTGCATGAG-TAAAACCCATGATGACAATCAAT----TATATATGATAATACATGAA-TAATAAAATGTCC-CCCAGACTCAAGTATGTGGTTACTCTTAGT----------AGATACG----------------------------------------------CCTCAAAGACTGTGGT--------------------------TATTCAAATTCCATG----TCCTGCCTGAGAAATGTCAACACGGGATCTGATGTAACGCACACCATTGTCTGCTACATG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87494484 285 - 129401213 ATTATGATTTTCAAATTCTAATTATTTTG---AAAGGTACATGAATAAAAAGCGATTAC-ACAACTGAT----GATATA---TAATATGTGAACTGCCAAAATGT----TTGGCAACAAAGGCTCTGATACCCTTAGT----------AAATAGGATAGCAGAATATAAATATGTTATATTATTAGTAAGTCTTAGTATATCATAATAAATCTTAGTAAATAGAAAATATGCAGTCACATTTATATTTTAATTCTACA----ACTTGTCTGAGAAATGT---CACAGAACTTAATAGCATATGCA-----GACTGCCATTTT
i mm10.chr8                I 353 C 0
s canFam3.chr16             17813611 236 -  59632846 ATTATGAATTTCAAAGCCTGAGTACTTAGAGAAAAGGTTTATGAG-TAAAAACCATGATGACAATAAATACACAATATATAATA----------TAATAAACTGT-CTCCCAGACTCAAAACTATGATTAGTCTTAGTAAAAAAAAAAAAAAATA----------------------------------------------CCTTTGGAGCCATGGT--------------------------CACTCAAATTCTATATTTGTCTGGTCTTAGAAATGTC--TAAGGGATCTAAAGTAATACACAGAATTGTCTCTTATAGC
i canFam3.chr16            C 0 I 287

a score=728961.000000
s hg38.chr4_KI270925v1_alt     84662 221 +    555799 ACATCTTTCTTAAAAGCTTGGAAATGTACA-CCAGTCATATCCACCCTTCCTTACGGG-----------------------------TATGA------------TATGTATTATGAAACCCTTCATATGTAAATTTATAT-TTTATCCTGAGAAATATGCTCTGTAATTAAATTGGACTATG-CAAAAATAGCtttttttttttttttttttttttACTTAGTACAAACTGTCGTTTCTGGTTAATGGTTTTCTCTCTTCAAGGT
s panTro4.chr4             192784356 214 + 193495092 ACATCTTTCTTAAAAGCTTGGAAATGTACA-CCAGTCATATCCACCCTTCCTTACGGG-----------------------------TATGA------------TATGTATTATGAAACCCTTCCTATGTAAATTTATAT-TTTACCCTGAGAAATATGCTCTGTAATTAAATTGGACTATG-CAAAAATAGC-------TTTTTTTTTTGTTTTTACTTAGTTCAAACTGTCGTTTCTGGTTAATGGTTTTCTCTCTTCAAGGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197895918 211 + 198332218 ACATCTTTCTTAAAAGCTTGAAAATGTACA-CCAGTCATATCCACCCTTCCTTACGGG-----------------------------TATGA------------TATGTATTATCAAACCCTTACTATGTAAATTTATAT-TTTATCCTGAGAAATATGCTCTGTAATTAAATTGGACTATG-CAAAAACAGC----------TTTTTTTGTTTTTACTTAGTTCAAACTGTCGTTTCTGGTTAATGGTTTTCTCTCTTCAAGGT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113654495 211 + 115148730 ACATCTTTCTTAAAAGCTTGGAAATGTACA-CCAGTCATATCCACCCTTCCTTACGGG-----------------------------TATGA------------TATGTATTATCAAACCCTTCCTATGTAAATTTATAT-TTTATCCTGAGAAATATGCTCTGTAACTAAATTGGACTATG-CAAAAATAGC----------TTTTTTTGTTTTTACTGAGTTCAAATTGTCGTTTCTGGTTAATGGTTTTCTCTCTTCAAGGT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183485520 209 + 184069350 ACATCTTTCTTAAAAGCTTGGAAATGTACA-CCAGTCATATCCACCCTTCCTTATGGG-----------------------------C---A------------TATCTATTATCATACCCTTCCTATGTAAATTTATAT-TTTATCCTGAGAAATATGCTCTGCAATTAAATTGGACTATG-CAAAAATAGC---------TTTTTTTTTTTTTTACTTAGTTCCAATTGTCATTTCTGTTTAATGGTTTTCTCTCTTCAGGAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188864648 209 + 189454096 ACATCTTTCTTAAAAGCTTGGATATGTACA-CCAGTCATATCCATCCTTCCTTATGGG-----------------------------C---A------------TATCTATTATCATACCCTTCCTATGTAAATTTATAT-TTTATCCTGAGAAATATGCTCTGCAATTAAATTGGACTATG-CAAAAATAGC---------TTTTTTTTTTTTTTACTTAGTTCAAATTGTCATTTCTGTTTAATGGTTTTCTCTCTTCAAGAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178292688 214 + 178775436 ACATCTTTCTTCAAAGCTTGGAAATGTACA-CCAGTCATAGCCACCCTTCCTTATGGG-----------------------------CATGA------------TATCTATTATCATACCCTTCctatgtaaatttatat-tttatcctgAGAAATATGCTCTGCAATTAAATTGGACTATG-Caaaaatagc-------ctttttttttttttttacttagttcAAATTGTCATTTCTGTTTAATGGTTTTCTCTCTTCAAGGT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135233475 212 + 135778131 ACATCTTTCTTAAAAGCTTGGAAATGTACA-CCAGTCATATCCACCCTTCCTTATGGG-----------------------------CATGA------------TATCTATTATCATACCCTTCCTATGTAAATTTATAT-TTTATCCTGAGAAATATGCTCTGCAATTAAATTGGACTATG-CAAAAATAGC---------TTTTTTTTTTTTTCACTTAGTTCAAATTGTCATTTCTGTTTAATGGTTTTCTCTCTTCAAGGT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190388908 213 - 190850796 ATATCTTTCTTAAAAGCTTGGAAACGTACA-CCCATCACACCCACCCTTCCTTATGGC-----------------------------TACGA------------TAGCTATTATCATATCCTTCCTATGTAAATTTATAT-TTTATCCTGATAAATATGCTTTACAATTAAATCAGACTATG-CAAAAATAGC--------TTTTTTGTTTGTTTGTTTTACTTCAAACTGTCATTTCTGTTTAATGGTTTTCTCTCTTCAAGGT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87494769 207 - 129401213 ATATCATTACTAAATGTTTGAAAATGTACCTTCATTCACAATCAACCTTCCTTGTGGG-----------------------------TATTG-------------ATCTGTTATCACAAGTTTCCAAAAGAAATGTATGTGCTTATCCTGAGAAATGAGCTCCACAATTCAAATGGACTATGAAAAAAATGGC----------------AAATTTTAGTTATTTCAAACTACCACTTTTATTTGATGGTTTTCCATCTTCCTGGA
i mm10.chr8                C 0 I 3
s canFam3.chr16             17814134 244 -  59632846 ACATCTTTTTTAAAAGCATAGAGACATACA----ATCACATCCCACCTTCATTAGGAGGTCCCACCTTCATCCCACTATCATATGCATATGATATGCTTATATGTATCTGTTATCATATCCTTATTATACAAATTTATAT-TTTATCCTAAGTAATGAGCTCCATAATTGAACCACACTATG-CAAAAATTAT-------------ACATCTTCTTACCC--TCTAAACTGCTATTTCTGTTTGAGAATTCTCTCACTTCATGGT
i canFam3.chr16            I 287 C 0

a score=61979.000000
s hg38.chr4_KI270925v1_alt     84883 18 +    555799 AAGCATCCCACttcattc
s panTro4.chr4             192784570 18 + 193495092 AAGCATCCCACttcattc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197896129 18 + 198332218 AAGCATCCCACAtcattc
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113654706 18 + 115148730 AAGCATCACACttcattc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183485729 18 + 184069350 AAGCATCCCACttcattc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188864857 18 + 189454096 AAGCATCCCACttcattc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178292902 18 + 178775436 AAGCATCCCacttcattc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135233687 17 + 135778131 AAGCAT-CCACttcattc
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190389121 18 - 190850796 AAACCTCTCACttcattc
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17814378 17 -  59632846 -AGCATCCTACTTCATTC
i canFam3.chr16            C 0 I 153
e mm10.chr8                 87494976  3 - 129401213 I

a score=3206567.000000
s hg38.chr4_KI270925v1_alt     84901 1233 +    555799  
s panTro4.chr4             192784588 1243 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197896147 1223 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113654724 1250 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183485747 1232 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188864875 1226 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178292920 1227 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135233704 1222 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190389139 1137 - 190850796  
i calJac3.chr3             C 0 I 1518
e mm10.chr8                 87494976    3 - 129401213 I
e canFam3.chr16             17814395  153 -  59632846 I

a score=2601035.000000
s hg38.chr4_KI270925v1_alt     86134 1129 +    555799  
s panTro4.chr4             192785831 1130 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197897370 1148 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113655974 1130 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183486979 1109 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188866101 1113 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178294147 1114 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135234926 1120 + 135778131  
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87494976    3 - 129401213 I
e canFam3.chr16             17814395  153 -  59632846 I
e calJac3.chr3             190390276 1518 - 190850796 I

a score=1903636.000000
s hg38.chr4_KI270925v1_alt     87263 789 +    555799  
s panTro4.chr4             192786961 791 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197898518 787 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113657104 796 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183488088 789 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188867214 792 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178295261 792 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135236046 793 + 135778131  
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87494979 748 - 129401213  
i mm10.chr8                I 3 I 431
e canFam3.chr16             17814395 153 -  59632846 I
e calJac3.chr3             190390276 1518 - 190850796 I

a score=3293671.000000
s hg38.chr4_KI270925v1_alt     88052 1380 +    555799  
s panTro4.chr4             192787752 1380 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197899305 1380 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113657900 1381 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183488877 1385 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188868006 1384 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178296053 1383 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135236839 1384 + 135778131  
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87495727  431 - 129401213 I
e canFam3.chr16             17814395  153 -  59632846 I
e calJac3.chr3             190390276 1518 - 190850796 I

a score=662327.000000
s hg38.chr4_KI270925v1_alt     89432 363 +    555799 gtctctactaccttctactctggccatgtgagacagcttgtgccccctttgcctccaccaggattggaagattcccgagacctctgcagaagca------gaagctgcaattcgtcctgtacagcctctagaactgtaagccaaataaacctcttttcttgcaaagtacccagtctccagtatttctttatagcagtgtgagaaaggactaatacagaaaattggtaccgaggaatgaggcattgctgtaaagatacctgaaaatgtggaagtggctttagaacaggtgatggacagagtttgcaaaagtgtgaagggctcaaaagaagacaggaagatgagggagaatttggaattttctagaaactt
s panTro4.chr4             192789132 369 + 193495092 gtctctactaccttctactctggccatgtgagacagcttgtgccccctttgcctccaccaggattggaagattcccgagacctctgcagaagcagaagctgaagctgcaattcatcctgtacagcctctagaactgtaagccaaataaaccccttttcttgcaaattacccagtctccagtatttctttatagcagtgtgagaaaggactaatacaAaaaattggtaccgaggaatgaggcattgctgtaaagatacctgaaaatgtggaagtggctttagaacaggtgatggacagagtttggaaaagtgtgaagggctcaaaagaagacaggaagatgagggagaatttggaattttctagaaactt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197900685 362 + 198332218 gtctctactaccttctactctggccatgtgagacagcttgtgccccctttgcctccaccaggattggaagattcctgagacctcca-agaagca------gaagctgcaatgtgtcctgtacagcctccagaactgtaagccaaataaacctcttttcttgtaaattacctagtctccagtatttctttatagcagtgtgagaaaggactaatataGCaaattggtactgaggagtgaggcattgctgtaaagatacctgaaaatgtggaaatggctttagaacaggtaatggacagagtttggaaaagtgtgaaaggctcaaaagaagacaggaagatgagggagaatttggaattttctagaaattt
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183490262 363 + 184069350 gtctctactaccttctactctggccatgtgagacagcttgtgccccctttgcctccaccaggattggaagattcctgagacctctgcagaagca------gaagctgcaatgcatactgtacagcctccagaactgtaagccaaataaacctctttccttgtaaattacccagtctccagtatttctttatagcagtgtgagaaaggactaatacagaaaattggtaccaaggagcgagacattgctgtaaagatacctgaaaatgtggaagtggctttaaaacaggtaatggacaaagtatggaaaagcgtgaagggttcaaaagaagacaggaagatgagggagactttggaatattctagaaactt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188869390 363 + 189454096 gtctctactaccttctactctggccatgtgagacagcttgtgccccctttgcctccaccaggattggaagattcctgagacctctgcagaagca------gaagctgcaatgcgtactgtacagcctccagaactgtaagccaaataaacctctttccttgtaaattacccagtctccagtatttctttatagcagtgtgagaaaggactaatacagaaaattggtaccaaggagcgagacattgctgtaaagatacctgaaaatgtggaagtggctttaaaacaggtaatggacagagtatggaaaagtgtgaagggttcaaaagaagacaggaagatgagggagactttggaatattctagaaactt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178297436 362 + 178775436 GTCTCTACTACCTTCTACTGTGGCCATGTGAGACAGCTTGTGCCCCCTTTGCCTCCACCAGGATTGGAAGATTCCTGAGACCTCtgcagaagca------gaagctgcaatGCGTACtgtacagcctccagaactgtaagccaaataaacctctttccttgtaaattacccagtctccagtatttctgtatagcagtgtgagaaaggactaatacagaaaattggtaccaaggagcgagacattgctgtaaagatacctgaaaatgtggaagtggctttaaAACAGGTAATGGACAGAGTATGGAAAAGTGTGAAGGGctc-aaagaagacaggaagatgagggagacTTTGGAATAttctagaaactt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135238223 363 + 135778131 gtctctactaccttctactctggccatgtgagacagcttgtgccccctttgcctccaccaggattggaagattcctgagacctctgcaaaagca------gaagctgcaatgcatattgtacagcctccagaactgtaagccaaataaacctcttttcttgtaaattacccagtctccaatatttctttatagcagtgtgagaaagcactaacacagaaaattggtaccaaggagtgagacattgctgcaaagatacctgaaaatgtggaagtgactttagaacaggtaatggacagagtatggaaaagtgtgaagggctcaaaagaagacaggaagatgagggagactttggaatattctagaaactt
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87495727 431 - 129401213 I
e canFam3.chr16             17814395 153 -  59632846 I
e calJac3.chr3             190390276 1518 - 190850796 I
e nomLeu3.chr7b            113659281   0 + 115148730 C

a score=4346107.000000
s hg38.chr4_KI270925v1_alt     89795 1803 +    555799  
s panTro4.chr4             192789501 1802 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197901047 1798 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113659281 1801 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183490625 1800 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188869753 1802 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178297798 1801 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135238586 1784 + 135778131  
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87495727  431 - 129401213 I
e canFam3.chr16             17814395  153 -  59632846 I
e calJac3.chr3             190390276 1518 - 190850796 I

a score=2961440.000000
s hg38.chr4_KI270925v1_alt     91598 1052 +    555799  
s panTro4.chr4             192791303 1052 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197902845 1052 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113661082 1017 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183492425 1046 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188871555 1046 + 189454096  
i macFas5.chr5             C 0 I 1759
s papAnu2.chr5             178299599 1046 + 178775436  
i papAnu2.chr5             C 0 I 1757
s chlSab2.chr7             135240370 1046 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190391794 1029 - 190850796  
i calJac3.chr3             I 1518 C 0
e mm10.chr8                 87495727  431 - 129401213 I
e canFam3.chr16             17814395  153 -  59632846 I

a score=31501.000000
s hg38.chr4_KI270925v1_alt     92650 12 +    555799 aaaatctcactt
s panTro4.chr4             192792355 12 + 193495092 aaaatctcactt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197903897 12 + 198332218 aaaatctcactt
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113662099 12 + 115148730 aaaaactcaatt
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183493471 12 + 184069350 AAAACCTCACTT
i rheMac3.chr5             C 0 I 1981
s macFas5.chr5             188874360 12 + 189454096 aaaacctCACTT
i macFas5.chr5             I 1759 C 0
s papAnu2.chr5             178302402 12 + 178775436 aaaaccTCACTT
i papAnu2.chr5             I 1757 C 0
s chlSab2.chr7             135241416 12 + 135778131 AAAACCTCACTT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190392823 12 - 190850796 aaatcctcgctc
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87495727 431 - 129401213 I
e canFam3.chr16             17814395 153 -  59632846 I

a score=3787.000000
s hg38.chr4_KI270925v1_alt     92662 3 +    555799 ttt-
s panTro4.chr4             192792367 3 + 193495092 ttt-
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197903909 3 + 198332218 ttt-
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113662111 3 + 115148730 ttt-
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188874372 3 + 189454096 TTT-
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178302414 3 + 178775436 TTT-
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135241428 3 + 135778131 TTT-
i chlSab2.chr7             C 0 I 1855
s calJac3.chr3             190392835 3 - 190850796 -tta
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87495727 431 - 129401213 I
e canFam3.chr16             17814395 153 -  59632846 I
e rheMac3.chr5             183493483 1981 + 184069350 I

a score=161613.000000
s hg38.chr4_KI270925v1_alt     92665 103 +    555799 aaacatagccactgtgcagtcagagaaatccccggtggcctgtggaaaagcccatgtgaagaggaatagaagtcctagtccctaggccagctgggcctccagg
s panTro4.chr4             192792370 103 + 193495092 aaacatagacaccgtgcagtcagagaaatccccggtggcctgtggagaagcccatgtgaagaggaatagaagtcctagtccctaggccagctgggcctccagg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197903912 103 + 198332218 aaacgtagccaccgtgcagtcagagaaatccccggtggcctgtagagaagcccatgtgaagaggagtagaagtcctagtccctaggccggctgggcctccagg
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113662114 103 + 115148730 aaacgtagccaccgtgcagtcagagaaatccccggtggcctgtggaaaagcccatgtgaagaggagtagaagtccaagtccctaggcctgctgggcctccagg
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188874375 103 + 189454096 AAATGTAACCACCGTGCAGTCAGAGAAATCCCTGGTGGCCTGTGGAGAAGCCCATGTGAAGAGGAGTAGAAGTCCTAGTCCCTAGGCAGGCTGGGCCTCCAGG
i macFas5.chr5             C 0 I 3
s papAnu2.chr5             178302417 103 + 178775436 AAACGTAACCACCGTGCAGTCAGAGAAATCCCTGGTGGCCTGTGGAGAAGCCCATGTGAAGAGGAGTAGAAGTCCTAGTCTCTAGGCAGGCTGGGCCTCCAGG
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190392838  80 - 190850796 aaacatagccactgtgcagtcagagaaatccc-ggcggcctctggagaagc----------------------cctagtccgcaggccatctgcgcttccagg
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87495727 431 - 129401213 I
e canFam3.chr16             17814395 153 -  59632846 I
e chlSab2.chr7             135241431 1855 + 135778131 I
e rheMac3.chr5             183493483 1981 + 184069350 I

a score=16205.000000
s hg38.chr4_KI270925v1_alt     92768 16 +    555799 tgacatccagcaccca
s panTro4.chr4             192792473 16 + 193495092 caccatccagcaccca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197904015 16 + 198332218 cgccatccagcaccca
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113662217 16 + 115148730 tgccagccatcaccca
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178302520 16 + 178775436 CACCAACCAGCACCCA
i papAnu2.chr5             C 0 I 8
s calJac3.chr3             190392918 16 - 190850796 caccagccagcacccg
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87495727 431 - 129401213 I
e canFam3.chr16             17814395 153 -  59632846 I
e chlSab2.chr7             135241431 1855 + 135778131 I
e macFas5.chr5             188874478  3 + 189454096 I
e rheMac3.chr5             183493483 1981 + 184069350 I

a score=6140.000000
s hg38.chr4_KI270925v1_alt     92784 8 +    555799 cttcccaa
s panTro4.chr4             192792489 8 + 193495092 cttcccaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197904031 8 + 198332218 cttcccaa
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113662233 8 + 115148730 cttctcga
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190392934 8 - 190850796 cttcccag
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87495727 431 - 129401213 I
e canFam3.chr16             17814395 153 -  59632846 I
e chlSab2.chr7             135241431 1855 + 135778131 I
e papAnu2.chr5             178302536 8 + 178775436 I
e macFas5.chr5             188874478 3 + 189454096 I
e rheMac3.chr5             183493483 1981 + 184069350 I

a score=3620.000000
s hg38.chr4_KI270925v1_alt     92792 3 +    555799 ctt
s panTro4.chr4             192792497 3 + 193495092 ctt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197904039 3 + 198332218 ctt
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113662241 3 + 115148730 ctt
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178302544 3 + 178775436 CTC
i papAnu2.chr5             I 8 C 0
s calJac3.chr3             190392942 3 - 190850796 ctt
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87495727 431 - 129401213 I
e canFam3.chr16             17814395 153 -  59632846 I
e chlSab2.chr7             135241431 1855 + 135778131 I
e macFas5.chr5             188874478 3 + 189454096 I
e rheMac3.chr5             183493483 1981 + 184069350 I

a score=13514.000000
s hg38.chr4_KI270925v1_alt     92795 15 +    555799 atgagtgTCCAGGCA
s panTro4.chr4             192792500 15 + 193495092 atgagtgTCCAGGCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197904042 15 + 198332218 atgagtgTCCAGGCA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113662244 15 + 115148730 atgagtgTCCAGGCA
i nomLeu3.chr7b            C 0 T 54
s papAnu2.chr5             178302547 15 + 178775436 ATGAGTGTACAGGCA
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87495727 431 - 129401213 I
e canFam3.chr16             17814395 153 -  59632846 I
e calJac3.chr3             190392945  0 - 190850796 C
e chlSab2.chr7             135241431 1855 + 135778131 I
e macFas5.chr5             188874478  3 + 189454096 I
e rheMac3.chr5             183493483 1981 + 184069350 I

a score=600.000000
s hg38.chr4_KI270925v1_alt     92810 1 +    555799 C
s panTro4.chr4             192792515 1 + 193495092 C
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197904057 1 + 198332218 C
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178302562 1 + 178775436 C
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87495727 431 - 129401213 I
e canFam3.chr16             17814395 153 -  59632846 I
e calJac3.chr3             190392945 0 - 190850796 C
e chlSab2.chr7             135241431 1855 + 135778131 I
e macFas5.chr5             188874478 3 + 189454096 I
e rheMac3.chr5             183493483 1981 + 184069350 I
e nomLeu3.chr7b            113662259 54 + 115148730 T

a score=15961.000000
s hg38.chr4_KI270925v1_alt     92811 25 +    555799 CAGCCATCGCCCAGTTCCCGACTTA
s panTro4.chr4             192792516 25 + 193495092 CAGCCATCGCCCAGTTCCCGACTTA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197904058 25 + 198332218 CAGCCATCGCCCACTTCCCGACTTA
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             188874481 25 + 189454096 CAACCAGCACCCACTTCCCAGCTCA
i macFas5.chr5             I 3 C 0
s papAnu2.chr5             178302563 25 + 178775436 CAGCCAGCGCCCGCCTTCCAATTAA
i papAnu2.chr5             C 0 T 80
e mm10.chr8                 87495727 431 - 129401213 I
e canFam3.chr16             17814395 153 -  59632846 I
e calJac3.chr3             190392945  0 - 190850796 C
e chlSab2.chr7             135241431 1855 + 135778131 I
e rheMac3.chr5             183493483 1981 + 184069350 I
e nomLeu3.chr7b            113662259 54 + 115148730 T

a score=8607.000000
s hg38.chr4_KI270925v1_alt     92836 12 +    555799 TGAGTGTCCAGA
s panTro4.chr4             192792541 12 + 193495092 TGAGTGTCCAGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197904083 12 + 198332218 TCATTGTCCAGA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113662205 12 + 115148730 tgggcctccagg
i nomLeu3.chr7b            T 54 C 0
s macFas5.chr5             188874506 12 + 189454096 TAAGTGTACAGG
i macFas5.chr5             C 0 T 52
s papAnu2.chr5             178302508 12 + 178775436 TGGGCCTCCAGG
i papAnu2.chr5             T 80 C 0
e mm10.chr8                 87495727 431 - 129401213 I
e canFam3.chr16             17814395 153 -  59632846 I
e calJac3.chr3             190392945  0 - 190850796 C
e chlSab2.chr7             135241431 1855 + 135778131 I
e rheMac3.chr5             183493483 1981 + 184069350 I

a score=7748.000000
s hg38.chr4_KI270925v1_alt     92848 12 +    555799 CACCAGCCAGCG
s panTro4.chr4             192792553 12 + 193495092 CACCAGCCAGCG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197904095 12 + 198332218 TACCAGCCAGTG
i ponAbe2.chr4             C 0 T 80
s nomLeu3.chr7b            113662217 12 + 115148730 tgccagccatca
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178302520 12 + 178775436 CACCAACCAGCA
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87495727 431 - 129401213 I
e canFam3.chr16             17814395 153 -  59632846 I
e calJac3.chr3             190392945  0 - 190850796 C
e chlSab2.chr7             135241431 1855 + 135778131 I
e macFas5.chr5             188874518 52 + 189454096 T
e rheMac3.chr5             183493483 1981 + 184069350 I

a score=12053.000000
s hg38.chr4_KI270925v1_alt     92860 16 +    555799 CCCACTTCCCATCTCA
s panTro4.chr4             192792565 16 + 193495092 CCCACTTCCCATCTCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197904027 16 + 198332218 cccacttcccaactta
i ponAbe2.chr4             T 80 C 0
s nomLeu3.chr7b            113662229 16 + 115148730 cccacttctcgactta
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178302532 16 + 178775436 CCCACTTCCCAGCTCA
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87495727 431 - 129401213 I
e canFam3.chr16             17814395 153 -  59632846 I
e calJac3.chr3             190392945  0 - 190850796 C
e chlSab2.chr7             135241431 1855 + 135778131 I
e macFas5.chr5             188874518 52 + 189454096 T
e rheMac3.chr5             183493483 1981 + 184069350 I

a score=20928.000000
s hg38.chr4_KI270925v1_alt     92876 18 +    555799 TGAGTGTCTAGGCACCAG
s panTro4.chr4             192792581 18 + 193495092 TGAGTGTCTAGGCACCAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197904043 18 + 198332218 tgagtgTCCAGGCACCAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113662245 18 + 115148730 tgagtgTCCAGGCACCAG
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188874466 18 + 189454096 TGGGCCTCCAGGCACCAA
i macFas5.chr5             T 52 C 0
s papAnu2.chr5             178302548 18 + 178775436 TGAGTGTACAGGCACCAG
i papAnu2.chr5             C 0 T 40
e mm10.chr8                 87495727 431 - 129401213 I
e canFam3.chr16             17814395 153 -  59632846 I
e calJac3.chr3             190392945  0 - 190850796 C
e chlSab2.chr7             135241431 1855 + 135778131 I
e rheMac3.chr5             183493483 1981 + 184069350 I

a score=50856.000000
s hg38.chr4_KI270925v1_alt     92894 46 +    555799 CCATCGCCCACTTCCCGACTTATGATTGGCCAGACACCAGCCAGTG
s panTro4.chr4             192792599 46 + 193495092 CCATTGCCCACTTCCCGACTTATGATTGTCCAGACACCAGCCAGTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197904061 46 + 198332218 CCATCGCCCACTTCCCGACTTATCATTGTCCAGATACCAGCCAGTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113662263 46 + 115148730 CCATCACCCACTTCCCAACTTATGATTGTCCAGGCACCAGCCAGCG
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188874484 46 + 189454096 CCAGCACCCACTTCCCAGCTCATAAGTGTACAGGCACCAGCCAGCG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178302526 46 + 178775436 CCAGCACCCACTTCCCAGCTCATGAGTGTACAGGCACCAGCCAGCG
i papAnu2.chr5             T 40 C 0
e mm10.chr8                 87495727 431 - 129401213 I
e canFam3.chr16             17814395 153 -  59632846 I
e calJac3.chr3             190392945  0 - 190850796 C
e chlSab2.chr7             135241431 1855 + 135778131 I
e rheMac3.chr5             183493483 1981 + 184069350 I

a score=11709.000000
s hg38.chr4_KI270925v1_alt     92940 22 +    555799 CCCACTTCCTGACTTATGAGGG
s panTro4.chr4             192792645 21 + 193495092 CCCACTTCCTGACTTATGAGG-
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113662309 22 + 115148730 CCCACTTCCCAACTTATGAGTA
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188874530 22 + 189454096 CCCGCCTCCCAATTAAtgagtg
i macFas5.chr5             C 0 T 80
s papAnu2.chr5             178302572 22 + 178775436 CCCGCCTTCCAATTAATGAGTG
i papAnu2.chr5             C 0 T 80
e mm10.chr8                 87495727 431 - 129401213 I
e canFam3.chr16             17814395 153 -  59632846 I
e calJac3.chr3             190392945  0 - 190850796 C
e chlSab2.chr7             135241431 1855 + 135778131 I
e rheMac3.chr5             183493483 1981 + 184069350 I
e ponAbe2.chr4             197904107  0 + 198332218 C

a score=9157.000000
s hg38.chr4_KI270925v1_alt     92962 18 +    555799 TCCAGACACCAACCAGCA
s nomLeu3.chr7b            113662331 18 + 115148730 TCCAGACACCAGCCAGCG
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188874472 18 + 189454096 TCCAGGCACCAACCAGCA
i macFas5.chr5             T 80 C 0
s papAnu2.chr5             178302514 18 + 178775436 TCCAGGCACCAACCAGCA
i papAnu2.chr5             T 80 C 0
e mm10.chr8                 87495727 431 - 129401213 I
e canFam3.chr16             17814395 153 -  59632846 I
e calJac3.chr3             190392945  0 - 190850796 C
e chlSab2.chr7             135241431 1855 + 135778131 I
e rheMac3.chr5             183493483 1981 + 184069350 I
e ponAbe2.chr4             197904107  0 + 198332218 C
e panTro4.chr4             192792666  0 + 193495092 C

a score=66564.000000
s hg38.chr4_KI270925v1_alt     92980 68 +    555799 CCCACTTCCCAACTTATGATTGTCCAGACACCAGCCAGCACCCACTTCCCAACTTATGAGTTTCCAGA
s panTro4.chr4             192792666 47 + 193495092 ---------------------GTCCAGACACCAGCCAGCACCCACTTCCCAACTTTTGAGTTTCCAGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197904107 68 + 198332218 CCCACTTCCCAACTTATGAGTGTACAGGCACCAGCCAGCACCCATTTCCCAACTCAAGAGTGTCCAGA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113662349 68 + 115148730 CCCACTTCCCAACTTATGAGTGTCCAGGCACCAGCCAGCGCCCACTTcccaacttatgagtgtccaga
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188874490 68 + 189454096 CCCACTTCCCAGCTCATAAGTGTACAGGCACCAGCCAGCGCCCGCCTCCCAATTAAtgagtgtccagg
i macFas5.chr5             C 0 T 80
s papAnu2.chr5             178302532 68 + 178775436 CCCACTTCCCAGCTCATGAGTGTACAGGCACCAGCCAGCGCCCGCCTTCCAATTAATGAGTGTCCAGG
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87495727 431 - 129401213 I
e canFam3.chr16             17814395 153 -  59632846 I
e calJac3.chr3             190392945  0 - 190850796 C
e chlSab2.chr7             135241431 1855 + 135778131 I
e rheMac3.chr5             183493483 1981 + 184069350 I

a score=39926.000000
s hg38.chr4_KI270925v1_alt     93048 34 +    555799 CACCAGCCAGCACCCACTTCCCAACTTATGAGTG
s panTro4.chr4             192792713 34 + 193495092 CACCAGCCAGCACCTACTTCTCAACTTATGAGTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197904175 34 + 198332218 CACCAGCCATCGGCCACTTGCCAACTTATGAGTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113662417 34 + 115148730 caccagccagcgcccacttcccagctcatgagtg
i nomLeu3.chr7b            C 0 T 200
s macFas5.chr5             188874478 34 + 189454096 CACCAACCAGCACCCACTTCCCAGCTCATAAGTG
i macFas5.chr5             T 80 C 0
s papAnu2.chr5             178302600 34 + 178775436 CACCAGCCAGCACCCACTTCCCAGCTCATGAGTG
i papAnu2.chr5             C 0 T 40
e mm10.chr8                 87495727 431 - 129401213 I
e canFam3.chr16             17814395 153 -  59632846 I
e calJac3.chr3             190392945  0 - 190850796 C
e chlSab2.chr7             135241431 1855 + 135778131 I
e rheMac3.chr5             183493483 1981 + 184069350 I

a score=41611.000000
s hg38.chr4_KI270925v1_alt     93082 40 +    555799 TCCAGGCAACAGCCATTGCCCATTTCCCAACTTATGATTG
s panTro4.chr4             192792747 40 + 193495092 TCCAGGCAACAGCCATCACCCATTTCCCAACTTATGATTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197904209 40 + 198332218 TCCAGGCATCAGCCATCGCCCGTTTCCCGGCTTTTGATTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113662251 40 + 115148730 TCCAGGCACCAGCCATCACCCACTTCCCAACTTATGATTG
i nomLeu3.chr7b            T 200 C 0
s macFas5.chr5             188874512 40 + 189454096 TACAGGCACCAGCCAGCGCCCGCCTCCCAATTAAtgagtg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178302594 40 + 178775436 TCCAGGCACCAGCCAGCACCCACTTCCCAGCTCATGAGTG
i papAnu2.chr5             T 40 T 40
e mm10.chr8                 87495727 431 - 129401213 I
e canFam3.chr16             17814395 153 -  59632846 I
e calJac3.chr3             190392945  0 - 190850796 C
e chlSab2.chr7             135241431 1855 + 135778131 I
e rheMac3.chr5             183493483 1981 + 184069350 I

a score=9467.000000
s hg38.chr4_KI270925v1_alt     93122 8 +    555799 TCCAGACG
s panTro4.chr4             192792787 8 + 193495092 TCCAGGCG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197904249 8 + 198332218 TCCAGACG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113662291 8 + 115148730 TCCAGGCA
i nomLeu3.chr7b            C 0 T 40
s macFas5.chr5             188874552 8 + 189454096 tccaggca
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178302594 8 + 178775436 TCCAGGCA
i papAnu2.chr5             T 40 C 0
e mm10.chr8                 87495727 431 - 129401213 I
e canFam3.chr16             17814395 153 -  59632846 I
e calJac3.chr3             190392945 0 - 190850796 C
e chlSab2.chr7             135241431 1855 + 135778131 I
e rheMac3.chr5             183493483 1981 + 184069350 I

a score=38835.000000
s hg38.chr4_KI270925v1_alt     93130 32 +    555799 CCAGCCATCACCCATTTCCCAACTTATGATTG
s panTro4.chr4             192792795 32 + 193495092 CCAGCCATCGCCCACTTCCCAACTTATGAGTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197904257 32 + 198332218 CCAGCCATCGCCCACTTCCCAACTTATGATTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113662259 32 + 115148730 CCAGCCATCACCCACTTCCCAACTTATGATTG
i nomLeu3.chr7b            T 40 C 0
s macFas5.chr5             188874560 32 + 189454096 ccagccagcacccacttcccagctcatgagtg
i macFas5.chr5             C 0 T 120
s papAnu2.chr5             178302602 32 + 178775436 CCAGCCAGCACCCACTTCCCAGCTCATGAGTG
i papAnu2.chr5             C 0 T 120
e mm10.chr8                 87495727 431 - 129401213 I
e canFam3.chr16             17814395 153 -  59632846 I
e calJac3.chr3             190392945  0 - 190850796 C
e chlSab2.chr7             135241431 1855 + 135778131 I
e rheMac3.chr5             183493483 1981 + 184069350 I

a score=42872.000000
s hg38.chr4_KI270925v1_alt     93162 40 +    555799 TCCAGTCGCCAGCCAGCGCCCACTTCCCAACTTATGATTG
s panTro4.chr4             192792827 40 + 193495092 TCCAGGCACCAGCCAGCACCCATTTcccaactaaagagtg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197904289 39 + 198332218 TCCAGTCGCCAGCCAGCGCCCACTTCCCAACTTATGATT-
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113662291 40 + 115148730 TCCAGGCACCAGCCAGCGCCCACTTCCCAACTTATGAGTA
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188874472 40 + 189454096 TCCAGGCACCAACCAGCACCCACTTCCCAGCTCATAAGTG
i macFas5.chr5             T 120 C 0
s papAnu2.chr5             178302514 40 + 178775436 TCCAGGCACCAACCAGCACCCACTTCCCAGCTCATGAGTG
i papAnu2.chr5             T 120 C 0
e mm10.chr8                 87495727 431 - 129401213 I
e canFam3.chr16             17814395 153 -  59632846 I
e calJac3.chr3             190392945  0 - 190850796 C
e chlSab2.chr7             135241431 1855 + 135778131 I
e rheMac3.chr5             183493483 1981 + 184069350 I

a score=42981.000000
s hg38.chr4_KI270925v1_alt     93202 22 +    555799 TCCAGGCGCCAGCCATCGTCCG
s panTro4.chr4             192792867 22 + 193495092 tccagacaccagccatcagcca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197904328 22 + 198332218 TCCAGGCACCAGCCATCTCCCA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113662331 22 + 115148730 TCCAGACACCAGCCAGCGCCCA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183495464 22 + 184069350 tccaggcaccaaccagcaccca
i rheMac3.chr5             I 1981 C 0
s macFas5.chr5             188874512 22 + 189454096 TACAGGCACCAGCCAGCGCCCG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178302554 22 + 178775436 TACAGGCACCAGCCAGCGCCCG
i papAnu2.chr5             C 0 T 40
s chlSab2.chr7             135243286 22 + 135778131 tccaggcaccaaccagcaccca
i chlSab2.chr7             I 1855 C 0
e mm10.chr8                 87495727 431 - 129401213 I
e canFam3.chr16             17814395 153 -  59632846 I
e calJac3.chr3             190392945  0 - 190850796 C

a score=41339.000000
s hg38.chr4_KI270925v1_alt     93224 18 +    555799 CTTCCCAACTTATGAGTG
s panTro4.chr4             192792889 18 + 193495092 cttcccagctcatgagtg
i panTro4.chr4             C 0 I 707
s ponAbe2.chr4             197904350 18 + 198332218 CTTCCCAACTTATGAGTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113662353 18 + 115148730 CTTCCCAACTTATGAGTG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183495486 18 + 184069350 cttcccagctcatgAGTG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188874534 18 + 189454096 CCTCCCAATTAAtgagtg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178302536 18 + 178775436 CTTCCCAGCTCATGAGTG
i papAnu2.chr5             T 40 C 0
s chlSab2.chr7             135243308 18 + 135778131 cttcccagctcatgagtg
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87495727 431 - 129401213 I
e canFam3.chr16             17814395 153 -  59632846 I
e calJac3.chr3             190392945  0 - 190850796 C

a score=60891.000000
s hg38.chr4_KI270925v1_alt     93242 40 +    555799 TCCAGGCAccagccaacacccatttcccaactcaagagtg
s ponAbe2.chr4             197904368 40 + 198332218 TCCAGGCACCAGCCAGCACCCATTTCCCAACTCAAGCGTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113662371 40 + 115148730 TCCAGGCACCAGCCAGCGCCCACTTcccaacttatgagtg
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183495504 40 + 184069350 TACAAGCACCAGCCAGCGCCTGCCTCCCAATTAAtgagtg
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188874552 40 + 189454096 tccaggcaccagccagcacccacttcccagctcatgagtg
i macFas5.chr5             C 0 I 50
s papAnu2.chr5             178302554 40 + 178775436 TACAGGCACCAGCCAGCGCCCGCCTTCCAATTAATGAGTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135243326 40 + 135778131 TACAGGCACCAGCCAGCACCCGCCTCCCAATTAAtgagtg
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87495727 431 - 129401213 I
e canFam3.chr16             17814395 153 -  59632846 I
e calJac3.chr3             190392945  0 - 190850796 C
e panTro4.chr4             192792907 707 + 193495092 I

a score=33487.000000
s hg38.chr4_KI270925v1_alt     93282 27 +    555799 tccagacaccagccatcggccacttcc
s ponAbe2.chr4             197904408 27 + 198332218 Tccagacaccagccatcggccacttcc
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113662411 27 + 115148730 tccagacaccagccagcgcccacttcc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183495544 27 + 184069350 tccaggcaccagccagcacccacttcc
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178302594 27 + 178775436 TCCAGGCACCAGCCAGCACCCACTTCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135243366 27 + 135778131 tccaggcaccagccagcacccacttcc
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87495727 431 - 129401213 I
e canFam3.chr16             17814395 153 -  59632846 I
e calJac3.chr3             190392945  0 - 190850796 C
e macFas5.chr5             188874592 50 + 189454096 I
e panTro4.chr4             192792907 707 + 193495092 I

a score=8634.000000
s hg38.chr4_KI270925v1_alt     93309 6 +    555799 cggctc
s ponAbe2.chr4             197904435 6 + 198332218 cagctc
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113662438 6 + 115148730 cagctc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183495571 6 + 184069350 cagctc
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178302621 6 + 178775436 CAGCTC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135243393 6 + 135778131 tagctc
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17814548 6 -  59632846 cagcat
i canFam3.chr16            I 153 C 0
e mm10.chr8                 87495727 431 - 129401213 I
e calJac3.chr3             190392945 0 - 190850796 C
e macFas5.chr5             188874592 50 + 189454096 I
e panTro4.chr4             192792907 707 + 193495092 I

a score=106223.000000
s hg38.chr4_KI270925v1_alt     93315 48 +    555799 atgagtgagccatctcggaagtagatcctccagtccccagtcaatctg
s ponAbe2.chr4             197904441 48 + 198332218 atgagggagccatctcagaagtagatccttcagtccccagtcaatctg
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113662444 48 + 115148730 atgagtgagccatctcggaagtagatcctccagtccccagtcaatctg
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183495577 48 + 184069350 atgagtgagccatctcagaagtagatcctccagtccccagtcaatctg
i rheMac3.chr5             C 0 I 9
s papAnu2.chr5             178302627 48 + 178775436 ATGAGTGAGCCATCTCAGAAGTAGATCCTCCAGTCCCCAGTCAATCTG
i papAnu2.chr5             C 0 I 9
s chlSab2.chr7             135243399 48 + 135778131 atgagtgagccatctcagaagtagatcctccagtccccagtcaatctg
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190392945 47 - 190850796 atgagtgagccatcttgg-agtaggtcctccagtgcccagtcaatctg
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17814554 48 -  59632846 atgaaagagtcatcttggaagtgaatcctccagttcccagtccagcca
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87495727 431 - 129401213 I
e macFas5.chr5             188874592 50 + 189454096 I
e panTro4.chr4             192792907 707 + 193495092 I

a score=1783286.000000
s hg38.chr4_KI270925v1_alt     93363 667 +    555799  
s ponAbe2.chr4             197904489 702 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113662492 702 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183495634 701 + 184069350  
i rheMac3.chr5             I 9 C 0
s macFas5.chr5             188874642 701 + 189454096  
i macFas5.chr5             I 50 C 0
s papAnu2.chr5             178302684 701 + 178775436  
i papAnu2.chr5             I 9 C 0
s chlSab2.chr7             135243447 707 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190392992 683 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17814602 665 -  59632846  
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87495727 431 - 129401213 I
e panTro4.chr4             192792907 707 + 193495092 I

a score=446513.000000
s hg38.chr4_KI270925v1_alt     94030 132 +    555799 CAATATTTTCTTTCAGGAAGAAATGCTCTCCTCCTTGCCTTGAAACTTCTCTGCATAAA-ATGAACAATCTGGGAATAGTGTAAATATTTTCCAACACAGGATCACTGTATTTTTCAATTTTTAATTACAGTT
s panTro4.chr4             192793614 132 + 193495092 CAATATTTTCTTTCAGGAAGAAATGCTCTTCTCCTTGCCTTGAAACTTCTCTGCATAAA-ATGAACAATCTGGGAATAGTGTAAATATTTTCCAACACAGGATCACTGTATTTTTCAATTTTCAATTACAGTT
i panTro4.chr4             I 707 C 0
s ponAbe2.chr4             197905191 132 + 198332218 CAATATTTTCTTTCAGGAAGAAATGCTCTCCTCCTTGCCTTGAAACTTCTCTGCATAAA-ATGAACAATCTGGGAATAGTGTAAATATTTTCCAACACAGGATCACCGTATTTTTCAATTTTCAATTACAGTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113663194 132 + 115148730 CAATATTTTCTTTCAGGAAGAAATGCTCTCCTCCTTGCCTTGAAACTTCTCTGCATAAA-ATGAACAATCTGGGAATAGTATAAATATTTTCCAACACAGGATCACTGTATTTTTCAATTTTCAATTACAGTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183496335 131 + 184069350 CAATATTTTCTTTCAGGAAG-AATGCTCTCCTCCTTGCTTTGAAACTTCTCTGCATAAA-ATGAACAATCTGGGAATAGTGTAAATATTTTCCATCACAGGATCACTGTATTTTTCGATTTTCATTTACAGTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188875343 131 + 189454096 CAATATTTTCTTTCAGGAAG-AATGCTCTCCTCCTTGCTTTGAAACTTCTCTGCATAAA-ATGAACAATCTGGGAATAGTGTAAATATTTTCCATCACAGGATCACTGTATTTTTCGATTTTCATTTACAGTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178303385 131 + 178775436 caatattttctttcaggaaG-AATGCTCTCCTCCTTGCTTTGAAACTTCTCTGCATAAA-ATGAACAATCTGGGAATAGTGTAAATATTTTCCATCACAGGATCACTGTATTTTTCGATTTTCATTTACAGTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135244154 131 + 135778131 CAATATTTTCTTTCAGGAAG-AATGCTCTCCTCCTTGCTTTGAAACTTCTCTGCATAAA-ATGAACAATCTGGGAATAGTGTAAATATTTTCCATCGCAGGATCACTGTATTTTTCGATTTTCAATTACAGTT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190393675 132 - 190850796 CAATATTTTCTTTCAGGAAGAAATGCTCTCCTTCCTGCCTTGAAACTTCCCTGCATAAA-ATGAAAAATCTGGGACCGGTATCAATATTTTCCTACACAGGATCACTGTATCTTTCCATTTTCAATTAGAGTT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17815267 124 -  59632846 CAATCTTTTTTTGCATGGAGAAATGTGTTCC--------TTGAAACTCCCCTGCATAAATGTGAAAAATAAAAGGATGGTGTGTGTATTTTCCAACCCA-GATCAATGTATTTTTCAATTTGGAATTAAAGTT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87495727 431 - 129401213 I

a score=556356.000000
s hg38.chr4_KI270925v1_alt     94162 177 +    555799 TTGTTTTCACCGTTACGTGA-------AATCATTCTGCCA-TTTAGGTACATTTG--AGCACCA-TTTAAAAAACAGTAATTATTATAAATGACTAAATAACTT-CAAAGGAGAGATTTCTTTCTTTTAGAAAGTGTCATCCTAACAAACTTTCCAATTGC-AAAA-ATGATACTCAAGGTGATCCATTAT
s panTro4.chr4             192793746 177 + 193495092 TTGTTTTCACCGTTACGTGA-------AGTCATTCTGCCA-TTTAGGTACATTTG--AGCATCA-TTTAAAAAACAGTAATTATTATAAATGACTAAATAACTT-CAAAGGAGAGATTTCTTTCTTTTAGAAAATGTCATCCTAACAAACTTTCCCATTGC-AAAA-ATGATACTCAAGGTGATCCATTAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197905323 177 + 198332218 TTGTTTTCACCGTTACGTTA-------AATCATTCTGCCA-TTTAGGTACATTTG--AGCATCA-TTAAAAAAACAGTAATTATTATAAATGACTAAATAACTT-CAAAGGAGAGATTTCTTTCTTTTAGAAAATGTCATCCTAACAAACTTTCCAATTGC-AAAA-ATGATACTCAAGGTGATCCATTAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113663326 161 + 115148730 TTGTTTTCACCGTTACGTGACGATGACAATCATTCTGCCA-TTTAGGTACATTTG--AGCATCA-TTTAAAG-----------------------AAATAACTT-CAAAGGAGAGATTTCTTTCTTTTAGAAAATGTCATCTTAACAAACATTCCAATTGC-AAAA-ATGATACTCAAGGTGATCCATTAT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183496466 184 + 184069350 TTGTTTTCACCATTACATGACAATGACAATCATTCTGCTG-TTTAGGTACATTTG--AGCATCA-TTTTAAAAACAGTAATTATTATATATGACTAAATAACTT-CAAAGGAGAGATTTCTTTCTTTTAGAAAATATCATCCTAACAAACTTTCCAATTGC-AAAA-ATGATAATCAAGGTGATCCGTTAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188875474 184 + 189454096 TTGTTTTCACCATTACATGACAAAGACAATCATTCTGCCG-TTTAGGTACATTTG--AGCATCA-TTTTAAAAACAGTAATTATTATATATGACTAAATAACTT-CAAAGGAGAGATTTCTTTCTTTTAGAAAATATCATCCTAACAAACTTTCCAATTGC-AAAA-ATGATAATCAAGGTGATCCGTTAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178303516 184 + 178775436 TTGTTTCCACCATTACATGACAATGACAATCATTCTGCCG-TTTAGGTATATTTg--agcatca-ttttaaaaacagtaattattatatattactaaATAACTT-CAAAggagagatttctttcttttagaaaatatcaTCCTAACAAACTTTCCAATTGC-AAAA-ATGATAATCAAGGTGATCCGTTAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135244285 184 + 135778131 TTGTTTTCACCATTACATGACAATGACAATCATTCTGCCG-TTTAGGTACATTTG--AGCATCA-TTTTAAAAACAGTAATTATTATATATGACTAAATAACTT-CAAAGGAGAGATTTCTTTCTTTTAGAAAATATCATCCTAACAAACTTTCCAATTGC-AAAA-ATGATAATCAAGGTGATCCATTAT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190393807 179 - 190850796 TCATTTTCACCATTACATGACAATGACATTCATTCTGCCA-TTTTGGTACATTTG--AGCATCA-TTTAAAAAAAACTAATTATTACAAGTGACTAAATAACGTAAAAAAGAGAGA---CATTCTTTTAGAAAATGTCATCCTAACCAAGTTTCTAATTGCAAAAA-AAGATAT----GACGATCTGTTAC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87496158 175 - 129401213 TTATTTTGATAGTCACATGAGTATAGC-----TTGGGCCATTTTAAGTATATTTGAAAATATCA-TATATCAAAGG-----TACAAAAAAGGGTTAAATAATAT-TTACAGAGAA---TTTTTCTTTAGAAAAAAATCAATCTAAGAAAATTTCTAACTGC-AAGGTAAAGTACTTAAGATAGTCTATGAT
i mm10.chr8                I 431 I 2688
s canFam3.chr16             17815391 174 -  59632846 TTATTTTGATAGTTATTTCACTGTTCCAATCATTCTGCCA-TCAAGGTAGATTTG--ATTATTATTTTTTAAAATTGTAATGACCATAAATGAC----TGACAC-CAAAATAGAAA----CTTCTTTTAGAAAATGCCATTCTAAGAAACT----AATTGC-AAAATATGGTATGCAGGATGGTCTATTAT
i canFam3.chr16            C 0 C 0

a score=376914.000000
s hg38.chr4_KI270925v1_alt     94339 140 +    555799 GTACTTCAAGACACTGGACTTCATTTAAAGGGAAGAAGGAGAAATGGCCGCAGTAAAAGTTGTAAAATAAAAATAAAATGTCTT----ACAGACATGAAAAGAAATAGTTTACAAGTCAACATATTGATCTTAAAATAATTCAA
s panTro4.chr4             192793923 140 + 193495092 GTACTTCAAGACACTGGACTTCATTTAAAGGGAAGAAGGAGAAATGGCCGCAGTAGAAGTTGTAAAATAGAAATAAAATGTCTG----ACAGACATGAAAAGAAATAGTTGACAAGTCAACATATTGATCTTAAAATAATTCAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197905500 144 + 198332218 GTACTTCAAGACACTGGACTTCATTTAAAGGGAAGTAGGAGAAATGGCCGCAGTAAAAGTTGTAAAATAAAAATAAAATGTCTTACTCACAGACATGAAAAGAAATAGTTTACAAGTCAACATATTGATCTTAAAATAATTCAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113663487 139 + 115148730 GTACTTCAAAACACTGGACTTCGTTTAAAGGGAAGAAGGACAAATGGCTGCAGTAAAAGTCGTAAAATA-----AAAATGTCTTACTCACAGACATGAAAAGAAATAATTTACAAGTCAACATATTGATCTCAAAATAATTCAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183496650 140 + 184069350 GTACTTCAAGACACTAGACTTCGTTTAAAGGGAAGAAGGAGAAATGGCCTCAGCGAAAGCAGTAAAATAAAAATAAAATGGCTTACTCACAGACATGA----AAATAGTTTACAAGTCAACATATTGATCTTAAAATAATTCAA
i rheMac3.chr5             C 0 I 8
s macFas5.chr5             188875658 140 + 189454096 GTACTTCAAGACACTAGACTTCGTTTAAAGGGAAGAAGGAGAAATGGCCGCAGCAAAAGTAGTAAAATAAAAATAAAATGGCTTACTCACAGACATGA----AAATAGTTTACAAGTCAACATATTGATCTTAAAATAATTCAA
i macFas5.chr5             C 0 I 1
s papAnu2.chr5             178303700 140 + 178775436 GTACTTCAAGACACTAGACTTCGTTtaaagggaagaaggagaaatggCCGCAGCgaaagtagtaaaataaaaataaaatggcttaCTCACAGACATGA----AAATAGTTTACAAGTCAACATATTGATCTTAAAATAATTCAA
i papAnu2.chr5             C 0 I 1
s chlSab2.chr7             135244469 140 + 135778131 GTACTTCAAGACACTAGACTTCATTTAAAGGGAAGAAGGAGAAATGGTCGCAGCGAAAGTAGTAAAATAAAAATAAAATGGCTTACTCACAGACATGA----AAATAGTTTACAAGTCAACATATTGATCTTAAAATAATTCAA
i chlSab2.chr7             C 0 I 8
s calJac3.chr3             190393986 123 - 190850796 ATACTTCAGGACACTGGACTTCATTTAAAGGGAAGAAGGTGTAATGGCAAC------------AAGCTAAAAATAAAAT---------ACAGACGTAAAGAGAAATATTTTATAAGTTAACATACTGATCTTAAAGTAATTCAA
i calJac3.chr3             C 0 I 2
s canFam3.chr16             17815565  99 -  59632846 TTCCTTCAGGACAGTAG------------GGGGAGAAGAAATAATGGTAGCATCAAAAGTAGT--GGTGATAATAAAA------ACTTATAGATA-------AAGTAACTCATAAAGCAACA-----ATCT-------------
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87496333 2688 - 129401213 I

a score=3522.000000
s hg38.chr4_KI270925v1_alt     94479 5 +    555799 ATAAA
s panTro4.chr4             192794063 5 + 193495092 ATAAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197905644 5 + 198332218 ATAAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113663626 5 + 115148730 ATAAA
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188875799 5 + 189454096 ACCAG
i macFas5.chr5             I 1 I 2
s papAnu2.chr5             178303841 5 + 178775436 ACCAG
i papAnu2.chr5             I 1 I 2
s calJac3.chr3             190394111 4 - 190850796 -CCAG
i calJac3.chr3             I 2 I 1
e mm10.chr8                 87496333 2688 - 129401213 I
e canFam3.chr16             17815664 0 -  59632846 C
e chlSab2.chr7             135244609 8 + 135778131 I
e rheMac3.chr5             183496790 8 + 184069350 I

a score=154719.000000
s hg38.chr4_KI270925v1_alt     94484  56 +    555799 TATTGACTATCTTCAAATAAAGGGAATGATTAC-ATAATTT-----AAGGCTATCCAT-----------------------------------------------TGAA
s panTro4.chr4             192794068  56 + 193495092 TATTGACTATCTTCAAATAAAGGAAATAATTAA-ATAATTT-----AAGGCTATCCAT-----------------------------------------------TGAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197905649  55 + 198332218 TATTGACTATCTTCAAAT-AAGGGAATGATTAA-ATAATTT-----AAGGCTATCCAT-----------------------------------------------TGAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113663631  56 + 115148730 TATTGACTACCTTCAAATAAAGGGAATGATTAA-ACAATTT-----AAGGCCATCCAT-----------------------------------------------TGAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183496798  56 + 184069350 TATTGACTATCTTCAAATAAAGGGAATGATTAA-ATAATTT-----AGGGCCATCCAT-----------------------------------------------TGAA
i rheMac3.chr5             I 8 C 0
s macFas5.chr5             188875806  56 + 189454096 TATTGACTATCTTCAAATAAAGGGAATGATTAA-ATAATTT-----AGGGCCATCCAT-----------------------------------------------TGAA
i macFas5.chr5             I 2 C 0
s papAnu2.chr5             178303848  56 + 178775436 TATTGACTGTCTTCAAATAAAGggaatgattaa-ataattt-----agGGCCATCCAT-----------------------------------------------TGAA
i papAnu2.chr5             I 2 C 0
s chlSab2.chr7             135244617  56 + 135778131 TATTGACTATCTTCAAATAAAGGGAATGATTAA-ATAATTT-----AGGGTCATCCAT-----------------------------------------------TGAA
i chlSab2.chr7             I 8 C 0
s calJac3.chr3             190394116 108 - 190850796 TATTGAGTATCTTCAAATAACGGGAATAATGAC-ATAAATTAAGGCAGGGCCGTCCGTTTGGAGACTGGGTGGCAGCTCACGCCTGTAATGCCATGAAGGAATAATGAC
i calJac3.chr3             I 1 C 0
s canFam3.chr16             17815664  57 -  59632846 TATTAAATGTTTTCAAGTATACACAATAATTAATATAAATT-----GAGGCCACATAT-----------------------------------------------TCAA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87496333 2688 - 129401213 I

a score=830951.000000
s hg38.chr4_KI270925v1_alt     94540 337 +    555799 AGAGATTGGggccaggc------------------atagtggctcatgcctgtaatcccacactttgggaggccgaggtgggtggatcacctgaggtcaggaggttgagaccagcttggctaacatggcaaagccccgtctctactaaaaatacaaaaattagctgggcgtggtgtcacatgcctg----taatcccagctacttgggaggctgaggcaggagaatcatttgaacccgggaggcggaggttgcagcgagctgagatcatgccactgcactccagaatgggagacagagcg-agattctatctcaaaagagacagagagagagagagagagagagagagagagagagagag
s panTro4.chr4             192794124 310 + 193495092 AGAGATTGGggccaggc------------------atagtggctcatgcctgtaatcccacactttgggaggccgaggtgggtggatcacctgaggtcaggaggtcgagaccagcttggctaacatggcaaagccccgtctctactaaaaatacaaaaattaactgggcgtggtgtcacatgcctg----taatcccagctacttgggaggctgaggcaggagaatcatttgaacccgggaggcggaggttgcagcgagctgagatcatacccctgcactccagaatgggagacagagtgaagattctatc----------------------------gagagagagagagagagagag
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197905704 309 + 198332218 AGAGATTGGggccaggc------------------agagtggctcatgcctgtaatcccacactttgggaggctgaggtgggtggatcacctgaggtcaggaggccgagaccagcttggctaacatggcaaagccccgtctctactaaaattacaaaaattagctgggcgtggtgtcacatgcctg----aaatcccagctacttgggaggctgaggcaggagaatcacttgaacccgggaggcagaggttgcagggagctgagatcacgccactgcactccagaatgggagacagagtg-agattctatc----------------------------tcgagagagagagagagagcg
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113663687 321 + 115148730 AGAGATTGGggccaggc------------------atagtggctcatgcctgtaatcccacactttgggaggccgaggtgggtggatcatctgaggtcaggaggtcgagactagcttggctaacatggcaaaacctcatctctactaaaaacacaaaaattagctgggcatggtcgcaggtgcctg----caatcccagctgcttgggaggctgaggcaggagaatcacttgaacctgggaggcggaggttgcagggagctgagatcacgccactgcactccagaatgggagacagagcg-agattctatc----------------gagagagagagagagagagagagagagagagag
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183496854 314 + 184069350 AGAAACTGGggccaggc------------------atggtgactcacgcctgtaatcccacacttcgggaggtcgaggtgggtggatcacctgaggtcaggagttcaagaccagcttggctaacatggcaaaaccccatctctactataaattcaaaaattagttgggcgtggtggcgtgtgcctgtctataattccagctacttgggaggctgaggcaggagaatcacttgaacccgggaggcagaggttgcagggagctgagatcatgccactgcactccagaatgggagacagacc--agattctatctc--------------------------aaaaaaaagtaaaaaaGAGAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188875862 314 + 189454096 AGAAACTGGggccaggc------------------atggtgactcacgcctgtaatcccacacttcgggaggtcgaggtgggtggatcacctgaggtcaggagttcaagaccagcttggctaacatggcaaaaccccatctctactataaatacaaaaattagttgggcatggtggcgtgtgcctgtctgtaattccagctacttgggaggctgaggcaggagaatcacgtgaacccgggaggcagaggttgcagggagctgagatcacgccactgcactccagaatgggagacagacc--agattctatctc--------------------------aaaaaaaagtaaaaaaGAGAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178303904 314 + 178775436 AGAAattggagccaggc------------------atggtgactcacgcctgtaatcccacacttcgggaggtcgaggtgggtggatcacctgaggccaggagttcgagaccagcttggctaacatggcaaaaccccatctctactataaatacaaaaattagttgggcatggtggcgtgtgcctgtctgtaattccagctacttgggaggctgaggcaggagaatcacttgaacccgggaggcagaggttgcagggagctgagatcacgccgctgcactccagaatgggagACAGAcc--agattctatctc--------------------------aaaaaaaagtaaaaaagagac
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135244673 314 + 135778131 AGAAATTGGggccaggc------------------atggtgactcacggctgtaatcccacacttcgggaggtcgaggtgggtggatcacctgaggtcaggagttcgagaccagcttggctaacatggcaaaaccccatctctactataaatacaaaaattagttgggcgtggtggcgtgtgcctgtctgtaattccagctacttgggaagctgaggcaggagaatcacttgaacccaggaggcagaggttgcagggagctgagatcatgccactgcactccagaatggaagacagacc--agattctatctc--------------------------aaaaaaaagtaaaaaaGAGAC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190394224 320 - 190850796 ATAAATTAAGGCAGGGCCATCCATTTGGAGATTGGgtggtggctcacgcctgtaatgctatgcttt-ggaggccaaggtgggtagataccttgaggtcaggaatttgagaccagtctggctaacatggcaaaaccctgcctctaccaaaaacatgaaaattagctgggcatggtgttaggtgcctg----taatcccagctacttgggaggctgaggcaggagaatcacttgaacccaggagatggaggttgcagggagccaagatcacaccactgcactctagaatgggagacagagcg-agtctccatctc---------------------------------agaaaaaaaaaga-
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87496333 2688 - 129401213 I
e canFam3.chr16             17815721   0 -  59632846 C

a score=1430995.000000
s hg38.chr4_KI270925v1_alt     94877 461 +    555799 agagaTTGGACTTACGAATTTACATATG-TCAATTGCATTTATTCCTAAGAACATT---------ATTCCAAGGCTGAGAATTTACCCACTTCTGACTACAGGAGTACAATAACCAGCAAGTGCTGATAAGAAAGCAACATTTTAGATACAGACTTTCCAGGAGTTAATAAATAATATAGTGAAAGTTACTATGGTCCCAT--------TGTT-TTTAGTTTA-ATCTTGATATTATGCATATGTTTCAAAATGGGGTCCTATTCATATCTCATTTTCCTCAAGTGCTCGAGAAT--CATGCCTTCTATTCATTATGTGTTACAGCCGTCCTCAGTTGTTTTTAAATGACT--------------------------GCATGTTTCATTCAGCAGCTTTCTTAATGGGGCAGCTGGAAAAATAAAAGATGACTGATGAAGCAGTGACGCTCATTTAAGCCACTGGCAAATATCATGTTATCCCCTGAGATTGGTGGCATTACCACCTTT
s panTro4.chr4             192794434 461 + 193495092 agagaTTGGACTTACGAATTTACATATG-TCAACTGCATTTATTCCTAAGAACATT---------ATTCCAAGGCTGAGAATTTACCCACTTCTGACTACAGGAGTACAATAACCAGCAAGTGCTGATAAGAAAGCAAAACTTTAGATACAGACTTTCCAGGAGTTAATAAATAATATGGTGAAAGTTACTATGGTCCCAT--------TGTT-TTTAGTTTA-ATCTTGATATTATGCATATGTTTCAAAATGGGGTCCTATTCATATCTCATTTTCCTCAAGTGCTCGAGAAT--CATGCCTTCTATTCATTATGTATTACAGCTGTCCTCAGTTGTTCTTAAATGACT--------------------------GCATGTTTCATTCAGCAGCTTTCTTGATGGGGCAGCTGGAAAAATAAAAGATGACTGATGAAGCAGTGACGCTCATTTAAGCCACTGGTAAATATCGTGTTATCCCCTGGGATCGGTGGCATTACCACCTTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197906013 460 + 198332218 agagaTTGTACTTATGAATTTACATATG-TCAATTGCATTTATTCCTAAGAACGTC---------ATTCCAAGTCTGAGAATTTACCCACTTCTGACTACAGGAGTACAATGACCAGCAAGTGCTGATAAGAAAGCAAAATTTTAGATACAGACTTTCCAGGAGTTAATAAATAATATAGTGAAAGTTACTATGGTCCCAT--------TTTT-TTTAGTTTA-ATCTTGATATTATGCGTATTTTTCAAAATGGGGTCGTATTCATATCTCATTTTCCTCAAGTCCTCAAGAAT--CATGCCTTCTATTCATTATGTATTACAGCCATCCTCAGTTGTTTTTAAATAACT--------------------------GCATGTTTCATTCACCAGC-TTCTTGATGGGGCAGCTGGAAAAATAAAAGATGACTGATGAAGCAGTGATGCCCATTTAAGCCACTGGTAAATATCGTGTTATCCCCTGAGATTGGTGGCATTACAACCTTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113664008 459 + 115148730 agagaTTGGACTTATGAATTTACATATG-TCAACTGCATTTATTCCTAAGAACATT---------ATTCCAAGTCTGAGAATTTACCCACTTCTGACTACAGGAGTACAATGACCAGCAAGTGCTGATAAGAAAGCAAAATTTTAGATACAGACTTTCCAGGAGTTAATAAATAATATAGTGAAAGTTACTATGGTCCCAT--------T-TT-TTTAGTTTA-ATCTTGATATTATGCATATTTTTCAAAATGGGGTCCTATTCATATCTCATTTTCCTCAAGTGCTCAAGAAT--CATGTCTTCTATTCATTATGTATTACAGCCGTCCTCAGTTGTTTTTAAATGACT--------------------------GCATGTTTCATTCAGCAGCTTTCTTGATGGGGCAGCTGGAAAAATAAAAGATGATTGATGAAGCAGTGACGCCCATTTAAGCCACTGGCAAATATCACGTTAT-CCCTGAGATCAGTGGCATTACCACCTTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183497168 454 + 184069350 AGAGATTGGACTTATGAATTTACATATG-TCAATTGCATTTATTCCTA-----------------CCTCTAAGTCTGAGAATTTACCCACTTCTGACTACAAGAGTACAATGACCAGCAAGTGCTGATAAGAAAGCAAAATTTTAGATACAGACTTTCCAGAAGTTAATAAATAGTATAGTGAACGTTCCTATGGTCCCAT--------TTTTATTTAGTTTA-ATCTTGATATTATGCATATTTTTCAACATGGGGTCTGATTCATATCTCATTTTCCTCAAGTGCTCAAGAAT--AATGCCTTCTATTCATTATGTATTACAGACTTCCTCAGTTATTTTCAAATGACT--------------------------GCATGTTTCACTCAGCAGCTTTCTTGATGGGGCAGCTGGAAAAATAAAAGATGATTGATGAAGCAGAGGTGCCCACTGAAGCCACTGGCAAATATCACATTATCCCCTGAGATGAGTGGCATTACCACCTTC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188876176 454 + 189454096 AGAGATTGGACTTATGAATTTACATATG-TCAATTGCATTTATTCCTA-----------------CCTCTAAGTCTGAGAATTTACCCACTTCTGACTACAAGAGTACAATGACCAGCAAGTGCTGATAAGAAAGCAAAATTTTAGATACAGACTTTCCAGGAGTTAATAAATAGTATAGTGAACGTTCCTATGGTCCCAT--------TTTTATTTAGTTTA-ATCTTGATATTATGCATATTTTTCAACATGGGGTCTGATTCATATCTCATTTTCCTCAAGTGCTCAAGAAT--AATGCCTTCTATTCATTATGTATTACAGACTTCCTCAGTTATTTTCAAATGACT--------------------------GCATGTTTCACTCAGCAGCTTTCTTGATGGGGCAGCTGGAAAAATAAAAGATGATTGATGAAGCAGAGGTGCCCACTGAAGCCACTGGCAAATATCACATTATCCCCTGAGATGAGTGGCATTACCAGCTTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178304218 454 + 178775436 agagattggACTTATGAATTTACATATG-TCAATTGCATTTATTCCTA-----------------CCTCTAAGTCTGAGAATTTACCCACTTCTGACTACAAGAGTACAATGACCAGCAAGTgctgataagaaagcaaaattttaGATACAGACTTTCCAGGAGTTAATAAATAGTATAGTGAAAGTTCCTATGGtcccat--------ttttatttagttta-atcttgatattatgcatatttttcaACATGGAGTCCGATTCATATCTCATTTTCCTCAAGTGCTCAAGAAT--AATGCCTTCTATTCATTATGTATTACAGACTTCCTCAGTTGTTTTCAAACGACT--------------------------GCATGTTTCACTCAGCAGCTTTCTTGATGGGGcagctggaaaaataaaagatgattgaTGAAGCAGAGGTGCCCACTGAAGCTACTGGCAAATATCACATTATCCCCTGAGATGAGTGGCATTACCACCTTC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135244987 454 + 135778131 AGAGACTGGACTTATGAATTTACATATG-TCAATTGCATTTATTCCTA-----------------CCTCTAAGTCTGAGAATTTACCCACTTCTGACTACAAGAGTACAATGACCAGCAAGTGCTGATAAGAAAGCAAAATTTTAGATACAGACTTTCCAGGAGTTAATAAATAGTATAGTGAGAGTTCCTATGGTCCCAT--------TTTTATTTAGTTTA-ATCTTGATATTATGCATATTTTTCAACATGGGGTCCGATTCATATCTCATTTTCCTCAAGTGCTCAAGAAT--AATGCCTTCTATTCATTATGTATTACAGACTTCCTCAGTTGTTTTCAAACGACT--------------------------GCATGTTTCACTCAGCAGCTTTCTTGACGGGGCAGCTGGAAAAATAAAAGATGATTGATGAAGCAGAGGTGCCCACTGAAGTCACTGGCAAATATCACATTATCCCCTGAGATGAGTGGCATTACCACCTTC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190394544 451 - 190850796 aGAGATTGGACATGTGAATTTACATATG-TCAGTTACATTTATTCCTAAGAACAGGTACTAA--ATCTCCAAGTCTGAGAATTTACCCACTTCTGACTGGAAGAGTATAATGACCAGCAAGTGCTGATAAGAAAGCAAAATTTTAGATACAGACTTTCCAGGAGTTCATAAAAAATGTAGTGAAAGTTACCATGGTCTCAT--------TTTTATTTAATTT--------GTA-TATGCATGGTTTTCAGCATGAGGTCCTATTTATATCTCATTTTTCTCAAGTGCTCAAGAAT--CATGTCTTCTA---------TATTACAACCTTCCTTAGTTGTTTTTAAACGACT--------------------------GAATGTTTGATTCAGCAGCTTTCTTGATGAGGCAGCTGGAAAAATAAGAGATGATTGATGAATCAGTGGCACGCACTTAGACCGTTGGTAAATACCATGTTCT-CCCTGAGCTCAGTGGCACGATCACCCTA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17815721 484 -  59632846 AGAGGTTATATTTATGAATTCACATAAGACCAATCACATTTTTCCCTAAGAACATATAGAAATGTCCCTAAAGCCTGAAGATTTACCTATTTCTGACTTCAGAAGTCTAATGGCCAGCAAGCACTGATAAGTACACATGATGTTAGATATAGACTCTCTGAAAATGAATTAATAATATAGTGAAAGTTACCAGAGTCCCATCTGCATTATTTT-TTTAGTTCCTGTCTAAAGACTGCGTAC-TTTTAAAAAATAATGTCCAACAAATATCTCACTTTCCTCAAGTTTTCATGAATTATATGTCTTCCATTCATTAGATATCATGAATTGCTTCAGTTATTTTTAAATGACCTCCAAGTCTGAAACAATATTACTTGGGAATATTTGATTCAGCAGCTTTCATGATGAGGCAGCTGGAAAAATGAAAAATGACCGATGAAGTGATGACATTCATTTAAGCCACTGGTAAA-ATGATGTTATTCTCTCA----------------------
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87496333 2688 - 129401213 I

a score=150181.000000
s hg38.chr4_KI270925v1_alt     95338 73 +    555799 CTCCATGCCCATTGAAGCCACTAGTAAGTATCATGTTATCCCCTGAGATCAGTGGCATTACCACCTTTCTCCT
s panTro4.chr4             192794895 73 + 193495092 CTCCATGCCCATTGAAGCCACTGGTAAATATCGTGTTATCCCCTGGGATCGGTGGCATTACAACCGTTCTCCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197906473 73 + 198332218 CTCCACACCCATTGAAGCTACCAGTAAGTATCATGTTATCCCCTGAGATCAGTGGCATTACCACCTTTCTCCA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113664467 71 + 115148730 CTCCACGCCCATTTAAGCC-CTGGTAAATAGCGTGTTAT-CCCTGAGATCGGTGGCATTACCACCTTTCTCCA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183497622 73 + 184069350 CTCCATGCCCATTGAAGCCACTGGTAAATATCATGTTATCCCCTGAGATGAGTGGCGTTACCACCTTCCTCCA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188876630 73 + 189454096 CTCCATGCCCATTGAAGCCACTGGTAAATATCATGTTATCCCCTGAGATCAGTGACATTACCACCTTCCTCCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178304672 73 + 178775436 CTCCACGCCCATTGCAGCCACTGGCAAATATCACGTTATCCCCTGAGATGAGTGGCGTTACCACCTTTCTCCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135245441 73 + 135778131 CTCCATGCCCATTGAAGCCACTGGTAAATATCATGTTATCCCCTGAGATGAGTGGCATTACCACCTTCCTCCA
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17816205 19 -  59632846 ---------------------------------------------AGATAAATGGGATTACCAC---------
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87496333 2688 - 129401213 I
e calJac3.chr3             190394995  0 - 190850796 C

a score=82303.000000
s hg38.chr4_KI270925v1_alt     95411 37 +    555799 TGTCCATTTAAGCCACTGGTAAATAACGTGTTATCCC
s panTro4.chr4             192794968 37 + 193495092 TACCCGTTTAAGCCACTGGTAAACAGCGTGTTATCCC
i panTro4.chr4             C 0 I 138
s ponAbe2.chr4             197906546 37 + 198332218 CGCCCATTTAAGCCACTGGTAAATAGCGTGTTATCCC
i ponAbe2.chr4             C 0 I 2
s nomLeu3.chr7b            113664538 37 + 115148730 CGCCCACTGAAGCCACTGGTAAATAGCGTGTTATCCC
i nomLeu3.chr7b            C 0 I 1
s rheMac3.chr5             183497695 37 + 184069350 CGCCCATTGCAGCCACTGGCAAATATCACGTTATCCC
i rheMac3.chr5             C 0 I 283
s macFas5.chr5             188876703 37 + 189454096 CGCCCATTGCAGCCACTGGCAAATATCACGTTATCCC
i macFas5.chr5             C 0 I 206
s papAnu2.chr5             178304745 37 + 178775436 CGCCCATTGAAGCCACTGGTAACTATCACGTTATCCC
i papAnu2.chr5             C 0 I 2
s chlSab2.chr7             135245514 37 + 135778131 CGCCCATTGAAGCCACTGGTAAATATCATGTTATCCC
i chlSab2.chr7             C 0 I 274
s mm10.chr8                 87499021 34 - 129401213 TACCTAGTTAAACTACCAGAAAGTACTGTG---TCCC
i mm10.chr8                I 2688 I 2
e canFam3.chr16             17816224  0 -  59632846 C
e calJac3.chr3             190394995  0 - 190850796 C

a score=42389.000000
s hg38.chr4_KI270925v1_alt     95448 17 +    555799 GAGATCAGTGGCATTAC
s panTro4.chr4             192795143 17 + 193495092 GAGATCAGTGGCATTAC
i panTro4.chr4             I 138 C 0
s ponAbe2.chr4             197906585 17 + 198332218 GAGATCAGTGGCATTAC
i ponAbe2.chr4             I 2 C 0
s nomLeu3.chr7b            113664576 17 + 115148730 GAGATCGGTGGCATTAT
i nomLeu3.chr7b            I 1 C 0
s rheMac3.chr5             183498015 17 + 184069350 GAGATCGGTGGCATTAC
i rheMac3.chr5             I 283 C 0
s macFas5.chr5             188876946 17 + 189454096 GAGATCGGTGGCATTAC
i macFas5.chr5             I 206 C 0
s papAnu2.chr5             178304784 17 + 178775436 GAGATCGGTGGCATTAC
i papAnu2.chr5             I 2 C 0
s chlSab2.chr7             135245825 17 + 135778131 GAGATCAGTGGCATTAC
i chlSab2.chr7             I 274 I 139
s mm10.chr8                 87499057 13 - 129401213 GGGATAAGTAGCT----
i mm10.chr8                I 2 C 0
e canFam3.chr16             17816224  0 -  59632846 C
e calJac3.chr3             190394995  0 - 190850796 C

a score=2188.000000
s hg38.chr4_KI270925v1_alt     95465 2 +    555799 TA
s panTro4.chr4             192795160 2 + 193495092 TA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197906602 2 + 198332218 TA
i ponAbe2.chr4             C 0 I 1
s nomLeu3.chr7b            113664593 2 + 115148730 AA
i nomLeu3.chr7b            C 0 I 1
s rheMac3.chr5             183498032 2 + 184069350 CA
i rheMac3.chr5             C 0 I 1
s macFas5.chr5             188876963 2 + 189454096 CA
i macFas5.chr5             C 0 I 1
s papAnu2.chr5             178304801 2 + 178775436 CA
i papAnu2.chr5             C 0 I 1
s mm10.chr8                 87499070 2 - 129401213 TA
i mm10.chr8                C 0 C 0
e canFam3.chr16             17816224 0 -  59632846 C
e calJac3.chr3             190394995 0 - 190850796 C
e chlSab2.chr7             135245842 139 + 135778131 I

a score=11980.000000
s hg38.chr4_KI270925v1_alt     95467 4 +    555799 CTTT
s panTro4.chr4             192795162 4 + 193495092 CTTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197906605 4 + 198332218 CTTT
i ponAbe2.chr4             I 1 C 0
s nomLeu3.chr7b            113664596 4 + 115148730 CTTT
i nomLeu3.chr7b            I 1 C 0
s rheMac3.chr5             183498035 4 + 184069350 CTTC
i rheMac3.chr5             I 1 C 0
s macFas5.chr5             188876966 4 + 189454096 CTTC
i macFas5.chr5             I 1 C 0
s papAnu2.chr5             178304804 4 + 178775436 CTTC
i papAnu2.chr5             I 1 C 0
s chlSab2.chr7             135245981 4 + 135778131 CTTC
i chlSab2.chr7             I 139 C 0
s mm10.chr8                 87499072 4 - 129401213 CTGC
i mm10.chr8                C 0 C 0
s canFam3.chr16             17816224 4 -  59632846 CTTT
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190394995 0 - 190850796 C

a score=371459.000000
s hg38.chr4_KI270925v1_alt     95471 120 +    555799 CTCCTGTGTACTCACAGACGTATGTGCACATGTGAGCAACCAAGAACA--------GATGT-AAAAAG--AGTGTCCTGGGGATGTTATTAGGTTAAAAAAGTTCGTTACATCACAAAGAAGAAAAT----AGTT
s panTro4.chr4             192795166 124 + 193495092 CTCCTGTGTACTCACAGACGTATGTGCACATGTGAGCAACCAAGAACA--------GATGT-AAAAAG--AGTGTCCTGGGGATGTTGTTAGGTTAAAAAAGTTTGTTACACCACAAAGAAGAAAATCGTTAGTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197906609 124 + 198332218 CTCCTGTGTACTCACGGACGTATGTGCACATGTGAGCAACCAAGAACA--------GATGT-AAAAAG--AGTGTCCTGGGGATGTTATTAGGTTAAAAAAGTTCGTTACACCACAAAGAAGACAATAGTTAGTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113664600 123 + 115148730 CTCTTGTGTACTCACAGAC--ATGTGCACATGTGAGCAACCAAGAACA--------GATGTAAAAAAG--AGTGTCCTGGGGGTGTTATTAGGTCAAAAAAGTTCGTTACACCACAAAGAAGAAAATAATTAGTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183498039 120 + 184069350 CTCCTGTGTACTCACGGATGTATGTGCACATGTGAGCAACTAAGAACA--------GATGT-AAAAAA--AGTGTCCTGGGGTTGTTATTAGGTTAAAAAAGTTCATTACACCACAAAGAAGAAAAT----GGTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188876970 120 + 189454096 CTCCTGTGTACTCACGGATGTATGTGCACATGTGAGCAACTAAGAACA--------GATGT-AAAAAA--AGTGTCCTGGGGTTGTTATTAGGTTAAAAAAGTTCATTACACCACAAAGAAGAAAAT----AGTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178304808 120 + 178775436 CTCCTGTGTACTCACGGATGTATGTGCACATGTGAGCAACTAAGAACA--------GATGT-GAAAAA--AGTGTCCTGGGGTTGTTATTAGGTTAAAAAAGTTCATTAcaccacaaagaagaaaat----aatt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135245985 120 + 135778131 CTCTTGTGTACTCACGAATGTATGTGCACATGTGAGCAACTAAGAACA--------GATGT-AAAAAA--AGTGTCCTGGGGGTGTTATTAGGTTAAAAAAGTCCATTACACCACAAAGAAGAAAAT----AGTT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190394995 115 - 190850796 CTTCTGTGCACTCACAGACATATGTGCACATGGGAGCCACCAAGAGCA--------TATGTAAAAAAA--AGTGTCCTGGCGGTGTTACT--GCTTAAAAAGGTCATTGCACAACAAAGAAGAAAGT--------
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87499076  90 - 129401213 CTCCTAGGTATGCACTGACGTATGTGCTGTTGGGAGTATCTAAGAACAT-------GATGT--------------CCTAGTGA--GTGCTAGG------------------CCACAAATCAAAAAGC----AATT
i mm10.chr8                C 0 C 0
s canFam3.chr16             17816228 128 -  59632846 CTCATATATATGCACAGCCATAAGTACACATGTGAGCAACTAATAACAGGGAAAGAGAAAC-AAAAAATTAATGTTCTACAGGTATTACTAGG-TGAAAAAGTTCATTGTACC-CAAAGCAAAAAAT----AATT
i canFam3.chr16            C 0 I 29

a score=807242.000000
s hg38.chr4_KI270925v1_alt     95591 247 +    555799 CCGTTATTTATAAGTAAGCTTTCAAACTGGAAAAATGTGATTTTGGTTAATATCATTTAGAGTGAAAATC----AGAGAAGCCATTTATCAAAGATGAATTTTGAATGAGtataaata--atgtatgtatacttatataatatttatgaaacacagaataatatatatGTGCTTATTTTCAAAATTGCTTAATAAATAAACA--TGGTGGTGCCAATTATAATTTTTAATTATTTAGTTTCTTGT-TGATTCATTG
s panTro4.chr4             192795290 247 + 193495092 CCGTTATTTATAAGTAAGCTTTCAAACTGGAAAAATGTGATTTTGGTTAATATCATTTAGAGTGAAAATC----AGAGAAGCCATTTATCAAAGATGAATTTTGAATGAGTATGAATA--ATGTATGTATACTTATATAATATTTATGAAACACAAAATAATATATATGTGCTTATTTTCAAAATTGCTTAATAAATAAACA--TGGTGGTGCCaattataatttttaattatttaGTTTCTTGT-TGATTCATTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197906733 247 + 198332218 CGGTTATTTGTAAGTAAGCTTTCAAACTGGAAAAATGTGATTTTGGTTAATATCATTTAGAGTGAAAATC----AGAGAAGCCATTTATCAAAGATGAATTTTGAATGAGTATGAATA--ATGTATTTATACTTATATAATATTTATGAAACACAAAATAATATATATGTGCTTATCTTCAAAATTGCTTAATAAATAAACA--TGGTGGTGCCaattataatttttaattatttaGTTTCTTGT-TGATTCATTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113664723 251 + 115148730 TGGTTATTTATAAGTAAGCTTTCAAACTGGAAAAATGTGATTTTGGTTAATATCATTTAGAGTGAAAATCAATTAGACAAGCCATTTATCAAAGACGAATTTTGAATGAGTATCAATA--ATGTATGTATACTTATATAATATTTATGAAACACAAAATAATATATATGTGCTTATTTTCAAAATTGCTTAATAAATAAACA--TGGTGGTGCCAATTATAATTTTTAATTATTTAGTTTCTTGT-TGATTCATTG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183498159 251 + 184069350 TGGTTATTTATAAGTAAGCTTTCAAACTGGAAAAATGGGATTTTGGTTAATATCATTTAGAGTGAAAATCAATTAGAGAAGCCACTTATTAAAGACGAATTTTGAATGAGTATCCATA--ATGTATGTATATTTGTATAATATTTATGAAGCACAAAATAATATATATGTGTTTATTTTCAAAATTGCTTAATAAATAAACA--TGGTTGTGCCaattataatttttaattttttaGTTTCTTAT-CCATTCATTG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188877090 251 + 189454096 TGGTTATTTATAAGTAAGCTTTCAAACTGGAAAAATGTGATTTTGGTTAATATCATTTTGAGTGAAAATCAATTAGAGAAGCCACTTATTAAAGATGAATTTTGAATGAGTATCCATA--ATGTATGTATATTTGTATAATATTTATGAAGCACAAAATAATATATATGTGTTTATTTTCAAAATTGCTTAATAAATAAACA--TGGTTGTGCCAATTATAATTTTTAATTTTTTAGTTTCTTAT-CCATTCATTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178304928 251 + 178775436 tggttaTTTATAAGTAAGCTTTCAAACTGGAAAAATGTGATTTTGGTTAATATCATTTAGAGTGAAAATCAATTAGAGAAGCTACTTATTAAAGATGAATTTTGAATGAGTATCcata--atgtatgtatatttgtataatatttatgaagcacaaaataatatatatgtgtttattttcaaaattgcttaATAAATAAACA--TGGTTGTgccaattataatttttaattttttagtttcttgt-CGATTCATTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135246105 251 + 135778131 TGGTTATTTATATGTAAGCTTTCAAACTGGAAAAATGTGATTTTGGTTAATATCATTTAGAGTGAAAATCAATTAGAGAAGCCACTTATTAAAGATGAATTTTGAATGAGTATCCATA--ATGTATGTATATTTGTATAATATTTATGAAGCACAAAATAATATATATGTGTTTATTTTCAAAATTGCTTAATAAATAAACA--TGGTTGTGCCAATTATAATTTTAAATTTTTTAGTTTCTTGT-CGATTCATTG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190395110 243 - 190850796 -AGTTGTTTATAAATAAGCTTTCAAACTGGAAAAACATGATTTTGGTTAATATCATTTAGAGTGAAAATCGGTTAGAGAAGTCATTTATCAAAGATGAATTTTGAATGAATACCAATA--ATGTATGTTTACTTATACATTATTTATGAAACACACAATAATATATATGTGCTGATTTTGAAAATTGCTT----AATAAACA--TAGTGGTGCCAATTATG---TTTAATTATTTAGTTTCTTAT-TGATTCATTG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87499166 241 - 129401213 CTGTT-TTTATAAATAAGCTTTCGAGCTGGAAGTATAGGATGCTTGTTAATATCATTAAGTGTGAAAATTAATTCGGAAAGCCACTTATCAAAGACTGGTTATGAATGAATAATGATATCATGCATTTATG---------GATTTATGAATTGCAAA--TGTATATATGTGCTTATTTTGAAAAGAGCTTAATAAAAGACCAGTTAGTCCTGCTAACTACAAGTTTTGATTTTT---TTTCATGTCTTATTTATTG
i mm10.chr8                C 0 I 5902
e canFam3.chr16             17816356  29 -  59632846 I

a score=2824683.000000
s hg38.chr4_KI270925v1_alt     95838 1028 +    555799  
s panTro4.chr4             192795537 1029 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197906980 1028 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113664974 1024 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183498410 1030 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188877341 1033 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178305179 1026 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135246356 1032 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190395353  957 - 190850796  
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87499407 5902 - 129401213 I
e canFam3.chr16             17816356   29 -  59632846 I

a score=89879.000000
s hg38.chr4_KI270925v1_alt     96866 50 +    555799 --ATATTTTTATATATGTGT--------------ATATACATATATGCTCCATCTATGCTGTTAAG
s panTro4.chr4             192796566 56 + 193495092 --atatttttatatatgtatgtat--------atatatatatatatGCTCCATCTATGCTGTTAAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197908008 40 + 198332218 --atatttat------------------------atatatatatatgctccatctatgctgttaag
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113665998 48 + 115148730 --atatatatatatacat----------------ataTATATATATGCTCCATCTATGCTCTTAAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183499440 46 + 184069350 --atacatatg--tatat----------------atatatatatatGCTCCATGTATGCTGCTAAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188878374 42 + 189454096 --atacatatg------t----------------atatatatatatgctccatgtatgctgctaag
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178306205 42 + 178775436 --atacatatg------t----------------atatatatatatgctccatgtatgctgctaag
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135247388 44 + 135778131 --atacatatg----tgt----------------atatatatatatgctccatgtatgctgctaag
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190396310 64 - 190850796 --TtatacatatatatatatatatacacacacacatatgtatgtatGCTTCATATATGCTGTTAAG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17816385 49 -  59632846 atatagatatacacacac----------------atacacatacattacacatctata-tgttaaa
i canFam3.chr16            I 29 C 0
e mm10.chr8                 87499407 5902 - 129401213 I

a score=2282999.000000
s hg38.chr4_KI270925v1_alt     96916 722 +    555799  
s panTro4.chr4             192796622 722 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197908048 724 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113666046 716 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183499486 728 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188878416 729 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178306247 727 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135247432 729 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190396374 699 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87505309 671 - 129401213  
i mm10.chr8                I 5902 C 0
s canFam3.chr16             17816434 736 -  59632846  
i canFam3.chr16            C 0 I 346

a score=211479.000000
s hg38.chr4_KI270925v1_alt     97638 75 +    555799 GGCAGCAAGGCTAGAGAGTGGAGAATAAGGAGGTGAAAATCGAACACCAAGAAGTCAGGT--GCATGCTCCTTCCAG
s panTro4.chr4             192797344 75 + 193495092 GGCAGCAAGGCTAGAGAGTGGAGAATAAGGAGGTGAAAATCGAACACCAAGAAGTCAGGT--GCATGCTCCTTCCAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197908772 75 + 198332218 GGCAGCAAGGCTAGAGAGTGGAGAATAAGGAGGTGAAAATCGAATGCCAAGAAGTCAGGT--GCATGCTCCTTCCAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113666762 75 + 115148730 GGCAGCAAGGCTGCAGAGTGGAGAATAAGGAGGTGAAAATCGAGGGCCAAGAAGTCAGGT--GCGTGCTCCTTCCAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183500214 74 + 184069350 GGCAGCAAGGC-AGAGAGTGGAGAAGAAGGAGGTGAAAATCGAAAGCCGAGAAGTCAGGT--GCATCCTCCTTCCGG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188879145 74 + 189454096 GGCAGCAAGGC-AGAGAGTGGAGAAGAAGGAGGTGAAAATCGAAAGCCGAGAAATCAGGT--GCATCCTCCTTCCGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178306974 74 + 178775436 GGCAGCAAGGC-AGAGAGTGGAGAAGAAGGAGGTGAAAATCGAAAGCCCAGAAGTCAGGT--GCATGCTCCTGCCGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135248161 74 + 135778131 GGCAGCAAGGC-AGAGAGTGGAGAAGAAGGAGGTGAAAATCGAAAGCCCAGAAGTCAGGT--GCATGCTCCTTCCGG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190397073 74 - 190850796 GGCAGTAAA---GGCCAGCAGAGAAGGAGGAGGTGACAATCAGAAGTGGAGAAGTCAGGTCAGCGTGCTCCTTCCAG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87505980 62 - 129401213 GAA---------CTGGAGTGAAGAATAA----GTAAAAAACCAGACTCCATAAACAAGTG--GCATGCTTCTTCTAG
i mm10.chr8                C 0 I 39
s canFam3.chr16             17817516 72 -  59632846 ggaaggaaggaaggaaggaaggaaggaaaGAGGCAAAACTCAGAATTCTGGAATTCA-----AAGTGTTCCTTCCCA
i canFam3.chr16            I 346 C 0

a score=852014.000000
s hg38.chr4_KI270925v1_alt     97713 288 +    555799 CGAGTCAGGATGCTGGAGGCC-ACCGCTGAGCCCAGACGCCGGCTTGAATTCAACCCGAGGATTTTAAACATTCACATGTAAGCACGGACAGG-TTCTCCACCTGCTCTCTGTGAATCAAATGTCCATGAG---CTTTTCCTTGTTTGGCGTGTTAACTTCTTGTCTGAACTGTGATTTTGGGAAATCTCAGCAGTTTCAGAA--------TGTCTGGTAATGAGAATCTAAGAATAGAGCCACCCAGCA-ACCTGGAGCATCGTTACTACCTGGAGTGGAAATTATACCTGTGCCCATTTT
s panTro4.chr4             192797419 288 + 193495092 CGAGTCAGGATGCTGGAGGCC-ACCGCTGAGTCCAGACGCCGGCTTGAATTCAACCCGAGGATTTTCAACATTCACATGTAAGCACGGACGGG-TTCTCCACCTGCTCTCTGTGAATAAAATGTCCATGAG---CTTTTCCTTGTTTGGCGTGTTAACTTCTTGTCTGAACTGTGATTTTGGGAAATCTCAGCAGTTTCAGAA--------TGTCTGGTAATGAGAATCTAAGAATAGAGCCACCCAGCA-ACCTGGAGCATCGTTACTACCTGGAGTGGAAATTATACCTGTGCCCATTTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197908847 288 + 198332218 CGAGTCAGGATGCTGGAGGCC-ACCGCTGAGCCCAGACGCCGGCTTGAATTCTACCCGAGGATTTTAAACATTCACAGGTAAGCACGGACGGG-TTCTCCACCTGCTCTCTGTGAATAAAATGTCCATGTG---CTTTTCCTTGTTTGGCTTGTTAACTTCTTGTCTGAACTGTGATTTTGGGAAATCTCAGCAGTTTCAGAA--------TGTCTGGTAATGAGAATCTAAGAACAGAGACACCCAGCA-ACCTGGAGCATCGTTACTACCTGGAGTGGAAATTATACCTGTGTCCATTTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113666837 288 + 115148730 CGAGTCAGGATGCTGGAAGCC-ACCGCCGAGCCCAGACGCCGGCTCGAATTCAACCCGAGGATTTTAAACATTCACATGGAAGCATGGACAGC-TTCTCTACTTGCTCTCTGTGAATAAAATGTCTATGTG---CTTTTCCTTGTTTGGCTTGTTAACTTCTTGTCTGAACTGTGATTTTGGGAAATCTCAGCAGTTTCAGAA--------TGTCTGCTAATGAGAACCTAAGAATAGAGCCACTCAGCA-ACCCAGAGCATCGTTACCACCTGGAGTGGAAATTATACCTGTGTCCATTTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183500288 286 + 184069350 TGAGTC---ATGCTGGAAGCC-ACCAGTGCACCCAGACACTGGCGTGAATCCAACCCGAGGATTTTAAACACTCACATCTAAGCCTGGATGGG-CTCTCCACGTGCTCTCTGTGAATAAAATGTCCGTGTG--TTTTTTCCTTGTTTGGCTTTTTAACGTCTTGTCTGAACTGTGATTTTGGGAAATCGCAGCAGTTTCAGAA--------TGTCTGGTAATGAGAACCTAAGAACAGAGCCACTCAGCA-TCTCGGAGCCTTGTTACCACCTGGAGTGGAAATCATACCTTTGTCCACTTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188879219 289 + 189454096 TGAGTCAGGATGCTGGAAGCC-ACCAGTGCACCCAGACACTGGCGTGAATCCAACCCGAGGATTTTAAACACTCACATCTAAGCCTGGATGGG-CTCTCCACGTGCTCTCTGTGAATAAAATGTCCGTGTG--TTTTTTCCTTGTTTGGCTTTTTAACGTCTTGTCTGAACTGTGATTTTGGGAAATCGCAGCAGTTTCAGAA--------TGTCTGGTAATGAGAACCTAAGAACAGAGCCACTCAGCA-TCTCGGAGCCTTGTTACTACCTGGAGTGGAAATTATACCTTTGTCCACTTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178307048 289 + 178775436 TGAGTCAGGATGCTGGAAGCC-ACCAGTGCACCCAGACACTGGCATGAATCCAACCCGAGGATTTTAAACACTCACATCTAAGCCTGGATGGG-CTCTCCACGTGCTCTCTGTGAATAACATGTCCGTGTG--TTTTTTCCTTGTTTGGCTTTTTAAAGTCTTGTCTGAACTGTGATTTTGGGAAATCTCAGCAGTTTCAGAA--------TGTCTGGTAATGAGAACCTAAGAACAGAGCCACTCAGCA-TCTCGGAGCCTTGTTACCACCTGGAGTGGAAATTATACCTTTGTCCActtt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135248235 289 + 135778131 TGAGTCAGGATGCTGGAAGCC-ACCAGTGCACCCAGACACTGGCATGAATTCAACCCGAGGGTTTTAAACACTCACATCTAAGCCTGGATGGG-CTCTCCACGTGCTCTCTGTGAATAAAATGTCCGTGTG--TTTTTTCCTTGTTTGGCTTTTTAATGTCTTGTCTGAACTGTGATTTTGGGAAATCTCAGCAGTTTCAGAA--------TGTCTGGTAATGAGAACCTAAGAACAGAGCCACTCAGCA-TCTGGGAGCCTTGTTACTACCTGGAGTGGAAATTATACCTTTGTCCACTTT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190397147 292 - 190850796 GGAGTCAGCATGCCGGAGGCC-ACCGCCGCGCCCAGATGCCAGCTTGATTTCAACCTGGGGGTTTTGGACATTCACATCTAAGCGTGGTTGGGTTTCTCCACTTGCTTTCTGTGAATAAAATTTCCATGTGTTTTTTTTCCTTGTTTGGCTTTTTAACTTCTTGTCTGAACTGTGATTTGGGGAAATCTCAGCAGTTTCCGAA--------TGTCTGGTAATGAGAACCTAAGCAGAGGGCCACTCAGCA-ACCTGGTGCATTATTACTACCTGGTGTGTAAATGACACCTGAGTCAATTTT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17817588 266 -  59632846 AGAGATGGGATACTGAAAACCAACCACCATGCCTAGACTCC--CTTG------------------------CTGAAATATAAAAGTATATGTT-TCTTCTA--TTATTTCTGTGAGTAAAACG---GTTAA---ACTTTCTTTCTTTGGGTTTTTAACTTCTTGCCTGGATTATTATTTTGGGAAA-CTAAGCAGTTTCATAAACAGCCCCTTTCTGGTAACAAGAACCTAAGAATAGAGATACTCACAATTTCTGGATCATAGTTACTACCTGGAGTGTAAATTATGCTTGAGGATAtttt
i canFam3.chr16            C 0 I 184
e mm10.chr8                 87506042  39 - 129401213 I

a score=22532.000000
s hg38.chr4_KI270925v1_alt     98001 7 +    555799 AAAATGT
s panTro4.chr4             192797707 7 + 193495092 AAAATGC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197909135 7 + 198332218 AAAATGC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113667125 7 + 115148730 AAAATGC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183500574 7 + 184069350 AAAATGC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188879508 7 + 189454096 AAAATGC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178307337 7 + 178775436 aaaatgc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135248524 7 + 135778131 AAAATGC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190397439 7 - 190850796 AAAATGC
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87506042 39 - 129401213 I
e canFam3.chr16             17817854 184 -  59632846 I

a score=1457678.000000
s hg38.chr4_KI270925v1_alt     98008 460 +    555799 ACATTCTTA---------TCGATGCAAGTGAGTCAGGGCCAATCATGTAATTTCTTTACTTGAGCAACTGTAAAATACGTAATATTTAATGCCCATGCCTATTGAGCCTTTTTATGTTTCACCTTGACAATATAAATTATTATAATGACATAAATATTAAAGCCGATCTAACATGTAATCATCATTGACAAGAACACATTTCAATGACTACACATCTCAATGCATTTTATTCCTTTCAAATCTAATTGACCAGCCTGATTTTTT-ATCACTTGATAAATCTCATGAACCTATTATGATCTGAAAAGCTCTCTTCAAGCATATTAAACTAAGTAGGCATTTGGGGGCTTTGATTTTTATGTAGAATTCTGTAAC-----AATTTAAAGAAAACCATGACCAATGATGAAAAATCCATAATAAAAAAAGATTTCAGCCTAAGAAGCTAAGAAACCATAATGATGTCCTATAGGCTGC
s panTro4.chr4             192797714 460 + 193495092 ACATTCTTA---------TCGATGCAAGTGAGTCAGGGCCAATCATGTAATTTCTTTCCTTGAGCAACTGTAAAATACATAATATTTAATGCCCATGCCTATTGAGCCTTTTTATGTTTCACCTTGACGATATAAATTATTATAATGACATAAATATTAAAGCCGACCTAACACATAATCATCATTGACAAGAACACATTTCAACGACTACACATCTCAATGCATTTTATTCCTTTCAAATCTAATTGACCAGCCTGATTTTTT-ATCACTTGATAAATCTCATGAACCTATTATGATCTGAAAATCTCTCTTCAAGCGTATTAAACTAAGTAGGCATTTGGGGGCTTTGATTTTTATGTAGAATTCTGTAAC-----AATTTAAAGAAAACCATGATCAATGATGAAAAATCCATAATAAAAAAAGATTTCAGCCTAAGAAGCTAAGAAACCATAATAATGTCCTATAGGCTGC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197909142 459 + 198332218 ACATTCTTA---------TCGATGCATGTGAGTCAGGGCCAATCATGTAATTTCTTTCCTTGAGCAACTGTAAAATATGTAATATTTAATGCCCATGGCTATTGAGCCTTTTTATGTTTCACCTTGACAATATAAATTATTTTAATGACATAAATATTAAAGCCGACCTATCATGTAATCATCATTGACAAGAACACATTTCAACAACTACACATCTCAATGCATTTTATTCCTTTCAAACCTAATTGACCAGCCTGACTTTTT-ATCACTTGATAAATCTCATGAACCTATTATGATCTG-AAATCTCTCTTCAAGCGTATTAAACTAAGTAGGCATTTGGGAGCTTTGATTTTTATGTAGAATTCTGTAAC-----AATTTAAAGAAAACCATGACCAATGATGAAAAATCCATAATAAAAAAAGATTTCAGCCTAAGAAGCTAAGAAACCATAATAATGTCCTATAGGCTGC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113667132 460 + 115148730 ACATTCTTA---------TCGATGCATGTGAGTCAGGGCCAATCATGTAATTTCCTTCCTTGAACAACTGTAAAATATGTAATATTTAATGACCATGCCTATTGAAGCTTTTTATGTTTCACCTTGACAATATAAATTATTATAATGACATAAATATTAAAGCTGACCTAACATGTAATCATCATTGACAAGAACACATTTCAACAACTACACATCTCAATGCATTTTATTCCTTTCAAACCTAATTAACCAGCCTGATTTTTT-ATCACTTGATAAATCTCATGAACCTATTATGATCTGAAAAGCTCTCTTCAAGCATATTAAACTAAGTAGGCATTTGGGAGCTTTGATTTTTAGGTAGAATTCTGTAAT-----AATTTAAAGAAAACCATGATCAATGATAAAAAATCCATAATAAAAAAAGATTTCAGCCTAAGAAGCTAAGAAACCATAATAATGTCGTATATGCTGC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183500581 460 + 184069350 ACATTCTTA---------TTGATGCTTGTGAGTCAGGGCCAATCATGTAATTTCTTTCCTTGAGCAACTCTAAAATATGTAATATTTAATGCCCATGCCCATTGAGCCTTTTTATGTTTCACCTTGACAATATAAATTATTATAATGACATAAATATTAAAGCCAACCTAACATGTCATCATCATTGACAAGAACACATTTCAACAACTACACATCTCAGTGCAATTTATTCCTTTCAAACCAAATTGATTAGCCTGATTTTTT-ATCACTTGATAAATATCATGAACCTATTATGATCTGAAAAGCTCTGTTCAAGCCTATTAAACTAAGTAGGCATTTGGGAGCTTTGATTTTTAGGCAGAATTCTGTAAC-----AATTTAAAGAAAACCATGACTAATGATGAAAAATCCATAATAAAAAAAGATTTCAGCCTAAGAAGCTAAGAAACCATAATAATGTCCTATAGGTTGC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188879515 459 + 189454096 GCATTCTTA---------TTGATGCTTGTGAGTCAGGGCCAATCATGTAATTTCTTTCCTTGAGCAACTCTAAAATATGTAATATTTAATGCCCATGCCCATTGAGCCTTTTTATGTTTCACCTTGACAATATAAATTATTATAATGACATAAATATTAAAGCCAACCTAACATGTCATCATCATTGACAAGAACACATTTCAACAACTACACATCTCAGTGCAATTTATTCCTTTCAAACCAAATTGACTAGCCTGATTTTTT-ATCACTTGATAAATATCATGAACCTATTATGATCTGAAAAGCTCTGTTCAAGCCT-TTAAACTAAGTAGGCATTTGGGAGCTTTGATTTTTAGGCAGAATTCTGTAAC-----AATTTAAAGAAAACCATGACTAATGATGAAAAATCCATAATAAAAAAAGATTTCAGCCTAAGAAGCTAAGAAACCATAATAATGTCCTATAGGTTGC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178307344 460 + 178775436 acattctta---------TTGATGCTTGTGAGTCAGGGCCAATCATGTAATTTCTTTCCTTGAGCTActctaaaatatgtaatatttaatgcCCATGCCCATTGAGCCTTTTTATGTTTCACCTTgacaatataaattattataatgacATAAATATTAAAGCCAACCTAACATGTAATCATCATTGACAAGAACACATTTCAACAACTACACATCTCAGTGCAATTTATTCCTTTCAAACCAAATTGACTAGCCTGATTTTTT-ATCACTTGATAAATATCATGAACCTATTATGATCTGAAAAGCTCTGTTCAAGCCTATTAAACTAAGTAGGCATTTGGGAGCTTTGATTTTTAGGTAGAATTCTGTAAC-----AATTTAAAGAAAACCATGACTAATGATGAAAAatccataataaaaaaagatttcagcCTAAGAAGCTAAGAAACCATAATAATGTCCTATAGGCTGC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135248531 460 + 135778131 ACATTCTTA---------TTGATGCATGTGAGTCAGGGCCAATCATGTAATTTCTTTCCTTGAGCAACTGTAAAATATGTAATATTTAATGCCCATGCCCATTGAGCCTTTTCATGTTTCACCTTGACAATATAAATTATTATAATGACATAAATATTAAAGCCGACCTAACATGCAATCATCATTGACAAGAACACATTTCAACAACTACGCATCTCAGTGCATTTTATTCCTTTCAAACCAAATTGACTAGCCTGATTTTTT-ATCACTTGATAAATATCATGAACCTATTATGATCTGAAAAGCTCTGTTCAAGCATATTAAACTAAGTAGGCATTTAGGAGCTTTGATTTTTAGGTAGAATTCTGTAAC-----GATTTAAAGAAAACCATGACTAATGATGAAAAATCCATAATAAAAAAAGATTTCAGCCTAAGAAGCTAAGAAACCATAATAATGTCCTATAAGCTGC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190397446 424 - 190850796 ACGTTCTTA---------GCTCTACATACGAGTCAGGGCCAGTCATGTAATTTCTTTCCTTGAGTGACTGTAAAATATGTGGTATTAAATGTCCACACCTACTGAGCCTTTTTATGTTTCACCCTGACAAAATAAATTATTATAATGACATAAATATTAAAGCC----------------------GGCGAGAACACACCTCAGCAGCTACTCATCTCAGTGCATTTTAGTCCTTACAAACCTAATTGACCAGCCTGAGTTTTTAATCACTTGATACCTCTCGTGACCCTATTAGGATCTGAAAAGCGCTCTTTAAGCGTATTAAACAAAGTAGGCATTTTGGAGCTTTGATTTTTAAGTGCAGTTCTGTAAC-----AATTTAAAGGAAACCATGACCAAAGATGAAAAACCCATAATCAG---------------AAGAAGCTAAGAAACCGTAGTGATGTCCTGGAGGCTGC
i calJac3.chr3             C 0 I 29
s canFam3.chr16             17818038 434 -  59632846 ACATTTTTAAACATCTTTTTTTTATATGTAAGTCAGAACCCATAGTGTAATTGCTTTACATGAACAATATTAAAATGCATAATATTTGCTAT-CAGACC---TGAGCCTTTT-ATATTTTACTCTGA-------------TATAATGAAGTAAACTTTTAAGCC--------------TAATCATCGAGAAGAATGTACTCCAACAACTAGATATCTCAATGTATGTCATTCCTTTCAAAAGCAATTTAACTGACTTATTTTTTAACTTCTTGGTATATTTCCTGATTCAATTTTGATCAGAAAAGTTCTTCTCAAATATATTAAATTAAGCAAATGCTTAGAAGCTTCAATTCTGGAGTGGAGTTTTCTAACTTTCTTATTTAATGG------TGAGTAATGATGGAAGATACAAAATAAA--AAGATCTCAGCCTAGGAAGCTAAGAAATT-TAATAATGCCCCATAGACTGC
i canFam3.chr16            I 184 C 0
e mm10.chr8                 87506042  39 - 129401213 I

a score=415695.000000
s hg38.chr4_KI270925v1_alt     98468 187 +    555799 CCTAAAAAGAAGGCCAAATGTCATTATTTTGTCTCACATCACCAGCAGGAACTCTGAACTATCAATT-AGATATTAAAAGCATAACTCCCCCAAATTCAGATATGACACTAGTgatagatagtttagatat-----tgatagatagatagatgaggcatagatgg------------------------------------------------------atacatag----atagatagata---agatagat---g
s panTro4.chr4             192798174 186 + 193495092 CCTAAAAA-AAGGCCAAATGTCATTATTTTGTCTCACGTCACCAGCAGGAACTCTGAACTATCAATT-AGATATTAAAAGCATAACTCCCCCAAATTCAGATATGACACTAGTgatagatagtttagatat-----tgatagatagatagatggggtatagatgg------------------------------------------------------atacccag----atagatagata---agatagat---g
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197909601 179 + 198332218 CCTGAAAAAAAGGCCAAATGTCATTATTTTGTCTCACATCACCAGCAGGAACTCTGAACTATCAATT-AGATATTAAAAGCATAACTCCCCCAAATTCAGATATGACACTAGT----GATAGTTTAGATAT-----Tgataggtagatagatgaggtatagatag------------------------------------------------------atac--------atagatagata---agatagat---g
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113667592 186 + 115148730 CCTAAAAA-AAGGCCAAATGTCAGTATTTTGTCTCACATCACCAGCAGGAACTCTGAACTACCAATT-AGATATCAAAAGCATAACTCCCCCAAATTCAGATATGACACTAGTGATAGATAGTTTCGATAT-----Tga----tagatagatgagatatagatag------------------------------------------------------atagatagatacatagatagata---agatagat---g
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183501041 183 + 184069350 CCTAAAAA-AAGGTCAGATGTCATTATTTTGTCTCACATCACCAGCAGGAATTCTGAACTATCAATT-AGATAGTAAAAGCATAACTCCCCCAAATTCAGATATGACACTAGT----GATAGTTTAGGTAT-----Tgatagatagataagatagatatagatgg--------------------------------------------------------atatag----atagatggatg---aaatagagatag
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188879974 183 + 189454096 CCTAAAAA-AAGGTCAGATGTCATTATTTTGTCTCACATCACCAGCAGGAATTCTGAACTATCAATT-AGATAGTAAAAGCATAACTCCCCCAAATTCAGATATGACACTAGT----GATAGTTTAGGTAT-----Tgatagatagataagatagatatagatgg--------------------------------------------------------agatag----atagatggatg---aaatagagatag
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178307804 238 + 178775436 CCTaaaaa-aaGGTCAGATGTCATTATTTTGTCTCACATCACCAGCAGGAATTCTGAACTATCAATT-AGATAGTAAAAGCATAACTCCCCCAAATTCAGATATGACACTAGT----GATAGTTTAGGTat-----tgatagatagataagatagatatagatggagatgatagatagagagatagatagagagatagagagatagatagatagata-gatagatag----atagatagatg---aaatagagatag
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135248991 187 + 135778131 CCTAAAAA-AAGGTCAGATGTCATTATTTTGTCTCACATCACCAGCAGGAACTCTGAACTATCAATT-AGATATTAAAAGCATAACTCCCCCAAGTTCAGATATGACACTAGT----gatagtttagatat-----tgatagatagatgagatagatacagatgg---------------------------------------------------a-tatagatag----atagataaatg---aaacagagatag
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17818472 188 -  59632846 TTTAAAAA-ACAATCAAATGTCATCA---CATCCAATAGCACCAGCAAGAACTCTGAGCTATAGGTTAAGATTTTAAAAGTATAATGCTCCCAAATCCAGATATGACACTAGT----GATAGTTtagatagatagatgataggcagaaaggataga---agatgg---------------------------------------------------acaatgggcag----acagatagatgaataattagat---G
i canFam3.chr16            C 0 I 3
e mm10.chr8                 87506042  39 - 129401213 I
e calJac3.chr3             190397870  29 - 190850796 I

a score=186874.000000
s hg38.chr4_KI270925v1_alt     98655 91 +    555799 aaatagagatagatacatagaagaaagaaagaAGTAAAGGAGGAAAAATAAAGGAAAAAGAAATGAATGAAAGAAG-TAGGGAGGAAGGAGA
s panTro4.chr4             192798360 91 + 193495092 aaatagagatagatacatagaagaaacaaagaagtaaaggaggaaaaataaaggaaaaagaaatgaaggaaagaag-tagggaggaaggaga
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197909780 92 + 198332218 aaatagagatagatacacagatGAAAGAAAGAAGTAAAGGAGGAAAAATAaaggaaaaagaaatgaaggaaagaagttagggaggaaggaga
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113667778 92 + 115148730 aaatagagatagatacagagatgaaagaaagaagtaaaggaggaaaaataaaggaaaaagaaatgaaggaaagaagttagggaggaaggaga
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183501224 91 + 184069350 atacacatatagatacatagatGACAGAAAGAAGTAAAGGATGAAAAATAAAGG-AAAAGAAATgaaggaaggaagttagggaggaatgaga
i rheMac3.chr5             C 0 I 112
s macFas5.chr5             188880157 91 + 189454096 atacacatatagatacatagatgacagaaagaagtaaaggatgaaaaataaagg-aaaagaaatgaaggaaggaagttagggaggaatgaga
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178308042 90 + 178775436 atacacatatagatacatagatgacagaaagaagtaaaggatgaaaaataaagg-aaagtaaatgaaggaaggaagttagggaggaatgag-
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135249178 91 + 135778131 atacacatatagatacatagatgacagaaagaagtaaaggacgaaaaataaagg-aaaagaaatgaaggaaggaagttagggaggaataaga
i chlSab2.chr7             C 0 I 1
e mm10.chr8                 87506042 39 - 129401213 I
e canFam3.chr16             17818660  3 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I

a score=31458.000000
s hg38.chr4_KI270925v1_alt     98746 44 +    555799 AGGAAAGAAGAAAATAGAAGGAAAGAAGGAGGGAAAGAAGAAAA
s panTro4.chr4             192798451 19 + 193495092 a--aaaga-----------------------ggaaagaagaaaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197909872 44 + 198332218 aggaaagaagaaaaaagaaggaaggaaggagggaaagaagaaaa
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113667870 44 + 115148730 aagaaaaaagaaaaaagaaggaaggaaggagggaaagaagaaaa
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188880248 30 + 189454096 -----------gaaaaaaagaaaggaaggagggaaagaaga---
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178308132 33 + 178775436 --------agaaaaaagaaggaaggaaggagggaaagaaga---
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135249270 31 + 135778131 ----------aaaaaagaaggaaggaaggagggagagaaga---
i chlSab2.chr7             I 1 C 0
e mm10.chr8                 87506042 39 - 129401213 I
e canFam3.chr16             17818660  3 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e rheMac3.chr5             183501315 112 + 184069350 I

a score=12981.000000
s hg38.chr4_KI270925v1_alt     98790 16 +    555799 AAGGAAGGAAGGAAGG
s panTro4.chr4             192798470 15 + 193495092 aaggaa-gaaggaagg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197909916 13 + 198332218 aaag---gaaggaagg
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             188880278 16 + 189454096 aaggaagggaagaaag
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178308165 16 + 178775436 aaggaagggaagaaag
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135249301 16 + 135778131 aaggaagggaagaagg
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87506042 39 - 129401213 I
e canFam3.chr16             17818660  3 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e rheMac3.chr5             183501315 112 + 184069350 I
e nomLeu3.chr7b            113667914  0 + 115148730 C

a score=18557.000000
s hg38.chr4_KI270925v1_alt     98806 26 +    555799 AAAG-AAGAAAAAAAGGAAGGAAGGAA
s panTro4.chr4             192798485 27 + 193495092 aaggaaagaagaaaaggaaggaaggaa
i panTro4.chr4             C 0 C 0
s macFas5.chr5             188880294 26 + 189454096 aagg-aaggaaagaaggaaggaaggaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178308181 26 + 178775436 aagg-aaggaaggaaggaaggaaagaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135249317 26 + 135778131 aagg-aaggaaggaaggaaagaaggaa
i chlSab2.chr7             C 0 I 20
e mm10.chr8                 87506042 39 - 129401213 I
e canFam3.chr16             17818660  3 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e rheMac3.chr5             183501315 112 + 184069350 I
e nomLeu3.chr7b            113667914  0 + 115148730 C
e ponAbe2.chr4             197909929  0 + 198332218 C

a score=6709.000000
s hg38.chr4_KI270925v1_alt     98832 15 +    555799 TGGGAAGAAGGGAAG
s panTro4.chr4             192798512 15 + 193495092 ggggaagaagggaag
i panTro4.chr4             C 0 C 0
s macFas5.chr5             188880320 13 + 189454096 --ggaaggaaggaag
i macFas5.chr5             C 0 M 4522
s chlSab2.chr7             135249363 15 + 135778131 ggggaagaagggaag
i chlSab2.chr7             I 20 C 0
e mm10.chr8                 87506042 39 - 129401213 I
e canFam3.chr16             17818660  3 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e papAnu2.chr5             178308207  0 + 178775436 C
e rheMac3.chr5             183501315 112 + 184069350 I
e nomLeu3.chr7b            113667914  0 + 115148730 C
e ponAbe2.chr4             197909929  0 + 198332218 C

a score=15154.000000
s hg38.chr4_KI270925v1_alt     98847 87 +    555799 GAAGACAGGAAGGAAGCAAGGAAGGAAGAGAGGAAGGAAGGAGAAGAAGGGAAGGAAGACAGGAAGGAAGCAAGGAAGGAAGAGAGG
s panTro4.chr4             192798527 84 + 193495092 gaagacaggaaggaagcaaggaagaaagagaggaaggaaggagaagaagggaaggaaga---aaaggaagcaaggaggtaagggagg
i panTro4.chr4             C 0 C 0
s chlSab2.chr7             135249378 83 + 135778131 ---gaaagaagggaaggaagg-aggaaggaaggaaggaaggggaagaaggaaaggaaataagggagggaaggaggaaggaaggaagg
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87506042 39 - 129401213 I
e canFam3.chr16             17818660  3 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e papAnu2.chr5             178308207  0 + 178775436 C
e macFas5.chr5             188880333 4522 + 189454096 M
e rheMac3.chr5             183501315 112 + 184069350 I
e nomLeu3.chr7b            113667914  0 + 115148730 C
e ponAbe2.chr4             197909929  0 + 198332218 C

a score=1288.000000
s hg38.chr4_KI270925v1_alt     98934 23 +    555799 AAGGAAGGAGAAGAAGGGAAGGA
s chlSab2.chr7             135249461 21 + 135778131 aaggaag--gaaggaaggaagga
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87506042 39 - 129401213 I
e canFam3.chr16             17818660  3 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e papAnu2.chr5             178308207  0 + 178775436 C
e macFas5.chr5             188880333 4522 + 189454096 M
e rheMac3.chr5             183501315 112 + 184069350 I
e nomLeu3.chr7b            113667914  0 + 115148730 C
e ponAbe2.chr4             197909929  0 + 198332218 C
e panTro4.chr4             192798611  0 + 193495092 C

a score=0.000000
s hg38.chr4_KI270925v1_alt     98957 276 +    555799 AGACAGGAAGGAAGCAAGGAAGGAAGAGAGGAAGGAAGGAGAAGAAGGGAAGGAAGACAGGAAGGAAGCAAGGAAGAAAGAGAGGAAGGAAGGAGAAGAAGGGAAGGAAGACAGGAAGGAAGCAAGGAAGGAAGAGAGGAAGGAAGGAGAAGAAGGGAAGGAAGACAGGAAGGAAGCAAGGAAGAAAGAGAGGAAGGAAGGAGAAGAAGGGAAGGAAGACAGGAAGGAAGCAAGGAAGGAAGAGAGGAAGGAAGGAGAAGAAGGGAAGGAAGACAG
e mm10.chr8                 87506042  39 - 129401213 I
e canFam3.chr16             17818660   3 -  59632846 I
e calJac3.chr3             190397870  29 - 190850796 I
e chlSab2.chr7             135249482   0 + 135778131 C
e papAnu2.chr5             178308207   0 + 178775436 C
e macFas5.chr5             188880333 4522 + 189454096 M
e rheMac3.chr5             183501315 112 + 184069350 I
e nomLeu3.chr7b            113667914   0 + 115148730 C
e ponAbe2.chr4             197909929   0 + 198332218 C
e panTro4.chr4             192798611   0 + 193495092 C

a score=11055.000000
s hg38.chr4_KI270925v1_alt     99233 165 +    555799 GAAGGAAGCAAGGAAGGAAGAGAGGAAGGAAGGAGAAGAAGGGAAGGAAGACAGGAAGGAAGCAAGGAAGGAAGAGAGGAAGGAAGGAGAAGAAGGGAAGGAAGACAGGAAGGAAGCAAGGAAGGAAGA--------GAGGAAGGAAGGAGAAGAAGGGAAGGAAGACAGGAA
s nomLeu3.chr7b            113667914 161 + 115148730 gaaggaaggaaggaaagaagaaaggaaggaaggggaagaagggaaggaagacaggaaggaagcaaggaagcaaggg------------gaagaagggaaggaggaagagaaggaagcaaggaagaaagacaggaaggaaggaaggaaggagaagaagggaaggaagaaaagaa
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87506042  39 - 129401213 I
e canFam3.chr16             17818660   3 -  59632846 I
e calJac3.chr3             190397870  29 - 190850796 I
e chlSab2.chr7             135249482   0 + 135778131 C
e papAnu2.chr5             178308207   0 + 178775436 C
e macFas5.chr5             188880333 4522 + 189454096 M
e rheMac3.chr5             183501315 112 + 184069350 I
e ponAbe2.chr4             197909929   0 + 198332218 C
e panTro4.chr4             192798611   0 + 193495092 C

a score=2798.000000
s hg38.chr4_KI270925v1_alt     99398 14 +    555799 GGAAGCAAGGAAGA
s ponAbe2.chr4             197909929 14 + 198332218 ggaagaaaggaagg
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113668075 14 + 115148730 ggaagcaaggaggt
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87506042 39 - 129401213 I
e canFam3.chr16             17818660  3 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135249482  0 + 135778131 C
e papAnu2.chr5             178308207  0 + 178775436 C
e macFas5.chr5             188880333 4522 + 189454096 M
e rheMac3.chr5             183501315 112 + 184069350 I
e panTro4.chr4             192798611  0 + 193495092 C

a score=6235.000000
s hg38.chr4_KI270925v1_alt     99412 25 +    555799 AAGAGAGGAAGGAAG-------GAGAAGAAGG
s panTro4.chr4             192798611 28 + 193495092 aaaagaggaaggaag----aaagggaggaagg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197909943 23 + 198332218 aagacaggaaggaag---------caaggaag
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113668089 32 + 115148730 aagggaggaaaggaggaaggaagggaggaagg
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87506042 39 - 129401213 I
e canFam3.chr16             17818660  3 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135249482  0 + 135778131 C
e papAnu2.chr5             178308207  0 + 178775436 C
e macFas5.chr5             188880333 4522 + 189454096 M
e rheMac3.chr5             183501315 112 + 184069350 I

a score=4947.000000
s hg38.chr4_KI270925v1_alt     99437 10 +    555799 GA---AGGAAGAC
s panTro4.chr4             192798639 13 + 193495092 gagggaggaagga
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197909966 10 + 198332218 ga---aggaagga
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113668121 13 + 115148730 gaaggagggagga
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183501427 10 + 184069350 ga---aggaagga
i rheMac3.chr5             I 112 C 0
e mm10.chr8                 87506042 39 - 129401213 I
e canFam3.chr16             17818660  3 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135249482  0 + 135778131 C
e papAnu2.chr5             178308207  0 + 178775436 C
e macFas5.chr5             188880333 4522 + 189454096 M

a score=22612.000000
s hg38.chr4_KI270925v1_alt     99447 26 +    555799 AGGAAGGAAGCAAGGAAGGATAGAA-A
s panTro4.chr4             192798652 26 + 193495092 aggaaggaaggcaggaaggaTAGAA-A
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197909976 26 + 198332218 aagaaggaaggaaggaaggaTAGAA-A
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113668134 26 + 115148730 aggaaggagggaaggaaggacagaa-a
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183501437 25 + 184069350 aggaaggaaggaaggaaggaaggaa--
i rheMac3.chr5             C 0 C 0
s chlSab2.chr7             135249482 26 + 135778131 aggaaggaaggaagaatagatagaac-
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87506042 39 - 129401213 I
e canFam3.chr16             17818660  3 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e papAnu2.chr5             178308207  0 + 178775436 C
e macFas5.chr5             188880333 4522 + 189454096 M

a score=81216.000000
s hg38.chr4_KI270925v1_alt     99473 47 +    555799 GGTGGAAGAAACAAGGCAAGAAAGAAGAAAGAGATAATAAGATTTAT
s panTro4.chr4             192798678 47 + 193495092 GGTGGAAGAAACAAGGCAAGAAAGAAGAAAGAGATAATAAGATTTAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197910002 47 + 198332218 GGTGGAAGAAACAAGGCAAGAAAGAAGAAAGAGATAATAAGATTTAC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113668160 45 + 115148730 ggtggaagaaacaaggcaaaaaagaagaa--agatagtaagaTTTAC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183501462 47 + 184069350 ggGGGAAGAAATAAGGCAAGAAAAAAGAAAGAGATAATAAGATTTAC
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178308207 47 + 178775436 ggaggaagaaataaggcaagaaaaaagaaagagataataagatttac
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135249508 47 + 135778131 ggtggaagaaataaggcaagaaaaaagaaagaGATAATAAGATTTAC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87506042 39 - 129401213 I
e canFam3.chr16             17818660  3 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e macFas5.chr5             188880333 4522 + 189454096 M

a score=28097.000000
s hg38.chr4_KI270925v1_alt     99520 18 +    555799 TGTCAAGAAGCTGAATAC
s panTro4.chr4             192798725 18 + 193495092 TGTCAAGAAGCTGAATAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197910049 18 + 198332218 TGTCAAGAAGCTGAATAC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113668205 18 + 115148730 TGCCAAGAAGCTGAATAC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183501509 18 + 184069350 TCTCAAGAAGCTTAATGC
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178308254 18 + 178775436 tctcaagaagCTTAATGC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135249555 18 + 135778131 TCTCAAGAAGCTTAATGC
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17818663 16 -  59632846 TGACAAGAAAATGCAC--
i canFam3.chr16            I 3 C 0
e mm10.chr8                 87506042 39 - 129401213 I
e calJac3.chr3             190397870 29 - 190850796 I
e macFas5.chr5             188880333 4522 + 189454096 M

a score=3600.000000
s hg38.chr4_KI270925v1_alt     99538 1 +    555799 C
s panTro4.chr4             192798743 1 + 193495092 C
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197910067 1 + 198332218 C
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113668223 1 + 115148730 C
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183501527 1 + 184069350 C
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188884855 1 + 189454096 C
i macFas5.chr5             M 4522 C 0
s papAnu2.chr5             178308272 1 + 178775436 C
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135249573 1 + 135778131 C
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17818679 1 -  59632846 C
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87506042 39 - 129401213 I
e calJac3.chr3             190397870 29 - 190850796 I

a score=464480.000000
s hg38.chr4_KI270925v1_alt     99539 169 +    555799 AGGGAGCA--TCTCCAGCAGCTTCGGTTCTGAAGATCTGACCGCAGGAACAACCTTCTCCAAGGTATTGGAGCTTTCCAGTTCACCCGTGTACGTG---CGTAG----ATGGATGAACACACAGAAGGCTTGC-CCATGGGTGCCTGGGTTGTAGGAGGATTACAAACACTGAGATGGT
s panTro4.chr4             192798744 169 + 193495092 AGGGAACA--TCTCCAGCAGCTTTGGTTCTGAAGATCTGACTGCAGGAACAACCTTCTCCAAGGTATTGGAGCTTTCCAGTTCACCCCTGTACGTG---CGTAG----ATGGATGAACACACAGAAGGCTTGC-CCATGGGTGCCTGGGTTGTAGGAGGATTACAAACACTGAGATGGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197910068 165 + 198332218 AGGGAACA--TCTCCAGCAGCTTTGGTTCTGAAGATCTGACTGCAGGAACAACCTTCTTCAAGGTATTGGAGCTTTCCAGTTCACCCATGTACGTG---CGTAG----ATGG----ACACACAGAAGGCTTGC-CCATAGGTGCCTGGGTTGTAGGAAGATTACAAACACTGAGATGGT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113668224 165 + 115148730 AGGGAACA--TCTCCAGCAGCTTTGGTTCTGAAGATCTGACTGTAGGAACAACCTTCTCCAAGGTATTGGAGCTTTCCAGTTCACTCATGTACGTG---CGTAG----ATGG----ACACACAGAAGGCTTGC-CCATGGGTGCCTGGGTTCTAGGAGGATTACAAACACTGAGATGGT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183501528 165 + 184069350 AGGGAACA--TCTCCATCAGCTTTGGTTCTGAAGATCTGACCGCACGGAAAACCTTCCCCAAGGTATTGGAGCTTTCCAGTTCACCCATGTATGTG---CGTAG----ATGG----ACACACACAAGGCTTGC-CCATGGGTGCCCGCGTTCCAGAAGGATTACAAACACTGAGATGAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188884856 165 + 189454096 AGGGAACA--TCTCCATCAGCTTTGGTTCTGAAGATCTGACCGCACGGAAAACCTTCCCCAAGGTATTGGAGCTTTCCAGTTCACCCATGTATGTG---TGTAG----ATGG----ACACACAGAAGGCTTGC-CCATGGGTGCCCGCGTTCCAGAAGGATTACAAACACTGAGATGAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178308273 165 + 178775436 AGGGAACA--TCTCCATCAGCTTTGGTTCTGAAGATCTGACCGCACGAAAAACCTTCCCCAAGGTATTGGAGCTTTCCAGTTCACCCATGTATGTG---CGTAG----ATGG----ACACACAGAAGGCTTGC-CCATGGGTGCCCGCGTTCCAGAAGGATTACAAACACTGAGATGAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135249574 163 + 135778131 AGGGAACA--TCTCCATCAACTTTGGTTCTGAAGATCTGACTGCATGAAAAACCTTCCCCAAGGTACTGGAGCTTTCCAGTTCACCTGTGTGTGTG---CATAG----ATGG----ACACACAGAAGGCTTGC-CCATGGGTGCC--GGTTCCAGAAGGATTACAAACACTGAGATGAT
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87506081 165 - 129401213 AGAGAGCAAGCCTCCAGCATCACTGGTTTTG-AGAACTGGCTGCAGAAGGAATCTTTCTGGGCATACCGAAGC-TTCTGGTTTACCT-TACCAGGA---AAAGG----ACAG----CCATACTGATGGCTTGCGTCATGGGAATCTGCATTCTAGGGGGATAATGAATTCCAACATGAC
i mm10.chr8                I 39 C 0
s canFam3.chr16             17818680 170 -  59632846 AGGGAACA--TCTCTAGTAGCTTTGATTCTGAGAAACTGTTTATAGGACAGACCTTCC---ACCTATTGGAGCTTTCCTGTCAATCCATGTGTGTGGTACATAGAAAAATGG----ACATATAGAAGGCTTCCCCCATGGGTTGCTCAGTCCTAGGAGGGTTAAAAACACCAGGATAGT
i canFam3.chr16            C 0 I 458
e calJac3.chr3             190397870  29 - 190850796 I

a score=3007904.000000
s hg38.chr4_KI270925v1_alt     99708 1237 +    555799  
s panTro4.chr4             192798913 1228 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197910233 1219 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113668389 1189 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183501693 1195 + 184069350  
i rheMac3.chr5             C 0 I 9
s macFas5.chr5             188885021 1186 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178308438 1186 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135249737 1197 + 135778131  
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87506246 1235 - 129401213  
i mm10.chr8                C 0 C 0
s canFam3.chr16             17819308 1262 -  59632846  
i canFam3.chr16            I 458 C 0
e calJac3.chr3             190397870   29 - 190850796 I

a score=4354.000000
s hg38.chr4_KI270925v1_alt    100945 28 +    555799 GGAATCATTTCCTAGGGGG--TAATGTGCA
s panTro4.chr4             192800141 28 + 193495092 GGAATCATTTCCTAGGGGG--TAATGTGCG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197911452 28 + 198332218 GGAATCATTTCCTAGGGGG--TAATGTGCA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113669578 28 + 115148730 GGAACCATTTCCTAGGGGG--CAATGTGCG
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188886207  9 + 189454096 -----ttttttctt----------------
i macFas5.chr5             C 0 I 6
s papAnu2.chr5             178309624 11 + 178775436 ----ttttttccttt---------------
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135250934 15 + 135778131 GGAATCATTTCCTCG---------------
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87507481 30 - 129401213 AGAATCATCTCTGTGTGGGAATAATATATA
i mm10.chr8                C 0 C 0
s canFam3.chr16             17820570 30 -  59632846 GGAATTATCTTAAATGCGCTATGATATACA
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190397870 29 - 190850796 I
e rheMac3.chr5             183502888  9 + 184069350 I

a score=1911.000000
s hg38.chr4_KI270925v1_alt    100973 1 +    555799 T
s panTro4.chr4             192800169 1 + 193495092 T
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197911480 1 + 198332218 T
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113669606 1 + 115148730 T
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178309635 1 + 178775436 t
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135250949 1 + 135778131 T
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87507511 1 - 129401213 T
i mm10.chr8                C 0 I 64
e canFam3.chr16             17820600 0 -  59632846 C
e calJac3.chr3             190397870 29 - 190850796 I
e macFas5.chr5             188886216 6 + 189454096 I
e rheMac3.chr5             183502888 9 + 184069350 I

a score=3083.000000
s hg38.chr4_KI270925v1_alt    100974 8 +    555799 GCCCGCCA
s panTro4.chr4             192800170 8 + 193495092 GTCCGCCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197911481 8 + 198332218 GCCCGCCA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113669607 8 + 115148730 GCCTGCCA
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178309636 3 + 178775436 tct-----
i papAnu2.chr5             C 0 I 13
s chlSab2.chr7             135250950 8 + 135778131 GCTTGCCA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87507512 64 - 129401213 I
e canFam3.chr16             17820600 0 -  59632846 C
e calJac3.chr3             190397870 29 - 190850796 I
e macFas5.chr5             188886216 6 + 189454096 I
e rheMac3.chr5             183502888 9 + 184069350 I

a score=589197.000000
s hg38.chr4_KI270925v1_alt    100982 310 +    555799 CTGTCttttttcttttgttt------------------ttttttttgagatggagtctcgctctgtcacccaggctgaagtgcagtggtgctatctcagctcaccacaacctccacctctcgggatcctgccattctcctgcctcagcctcctgagtagctgggattacaggcatgcaccaccacgcccggctaa--ttttgtatttttagtagagatggggtttctccttgttggtctggctggtttcgaactctctacctcaggtgatctgcccccttcagcctcccaaagtgctgggattacaggcgtcagccaccacgcctggcTC
s panTro4.chr4             192800178 320 + 193495092 CTGTCTTTtttcttttcttttcttt--------ttttattttttttgagatggagtctcgctctgtcacccaggctgaagtgcagtggtgctatctcagctcaccacaacctccacctctcgggatcatgccattctcctgcctcagcctcctgagtagctgggattacaggcatgcaccaccacgcccagctaa--ttttgtatttttagtagagatggggtttctccttgttggtctggctggtttcgaactctctacctcaggtgatctgcccccttcagcctcccaaagtgctgggattacaggcgtcagccaccacgcctggcTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197911489 321 + 198332218 CTGTCTTTTTTCttttgttttttttt------gtttttgtttttttgagacggagtctcgctctgtcacccaggctggagtgtagtggtgtgatctcagctcaccacaacctccatctcttgggttcatgccattctcctgcctcagcctcctgagtagctgggattacaggcatgcgccaccacacccgactaa--ttttgta-ttttagtagagatggggtttctccttgttggtctggctggtttcgaactctctgcctcaggtgatcttcccccttcagcctcccaaagtgctgggattacaggcgtcagccaccacacctggctG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113669615 328 + 115148730 CTTTCTTttttcttttcttttcttttcttttcttttcttttcttttgagacggagtctcgctctgtcacccaggctggagtgcagtggtgtgatctcagctcaccgcaacctctacctcttgggttcatgccattctcctgcctcagcctcctgagtagctgggattacaggcatgtgccaccacacccggctaa--tttcgtattttcagtagagatggggtttctccttgttggtccggctggtttcgaactctcgacctcaggtgatctgcccccttcagcctcccaaagtgctgggattacaggtgtcagccaccgcgcctggcTG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183502897 311 + 184069350 ---tttttttttttttttttttttt-------------ttttttgagagagagagtcacgccctgtcccccaggctggagtg-agtggccggatctcggctcactgcaagctccg-cccccgggttcccgccattctcctgcctcagcctcccgagtagctgggaccacaggcgc-cgccaccgcgcccagctgattttttgtgtttttggtagagacggggtttctccttgttggtccggctggtttaaaactctcgacctcaggtgatccgcccccctcaccctcccaaaatgctgggattacaggcctgagcctccgcgcccggcTG
i rheMac3.chr5             I 9 C 0
s macFas5.chr5             188886222 311 + 189454096 ---ttttcctttttttttttttttt-------------ttttttgagagagagagtcacgccctgtcccccaggctggagtg-agtggccggatctcggctcactgcaagctccg-cccccgggttcccgccattctcctgcctcagtctcccgagtagctgggaccacaggtgc-cgccaccgcgcccagctgattttttgtgtttttggtagagacggggtttctccttgttggtccggctggtttaaaactctcgacctcaggtgatccgcccccctcaccctcccaaaatgctgggattacaggcctgagcctccgcgcccggcTG
i macFas5.chr5             I 6 C 0
s papAnu2.chr5             178309652 312 + 178775436 ---tttttttttttttttttttttt-------------ttttttgagagagagagtcacgccctgtgccccaggctggagtg-agtggccggatctcagctcactgcaagctccgccccccgggttcccgccattctcctgcctcagtctcccgagtagctgggaccacaggcgc-cgccaccgcgcccggctgattttttgtgtttttggtagagacggggtttctccttgttggtccgGCTGGTTtaaaactctcgacctcaggtgatccgcccccctcaccctcccaaaatcctgggattacaggcctgagccgccgCCCCCAGCTG
i papAnu2.chr5             I 13 C 0
s chlSab2.chr7             135250958 298 + 135778131 --------Ctttcttttttcttttt-------------tt------gagagaaagtcacgccctgtcccccaggctggagtg-agcggcgcgatctcggttgtctgcaagctccgccccccgcgttcccgccattctcctgcctcagcctcccgaggagctgggaccacaggcgc-cgccaccacgtccggctaa-tttttgtatttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctc--gtgatctgcccgcctcgacctcccaaagtgctgggattacaggcctgagccgccgcccccggcTG
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87507512  64 - 129401213 I
e canFam3.chr16             17820600   0 -  59632846 C
e calJac3.chr3             190397870  29 - 190850796 I

a score=354528.000000
s hg38.chr4_KI270925v1_alt    101292 152 +    555799 TGCTGGCCACTTTCAGGAAACATTTGGTGCTGCTTCCTCCTGCCCATTGTCCTAAAGTTACCTCGAGACTCCCATCAAGATCTGGCAGGTGAACTT-----------------------------------------------------------------GTCCTTGTTTAAAAGTAAGGAAAGCTGAAGACTCCAGTA-TGTGTGCATTCATCAAG
s panTro4.chr4             192800498 152 + 193495092 TGCTGGCCACTTTCAGGAAACATTTGGTGCTGCTTCCTCCTGCCCATTGTCCTAAAGTTACCTCGAGACTCCTATCAAGATCTGGCAAGTGAACTT-----------------------------------------------------------------GTCCTTGTTTAAAAGTAAGGAAAGCTGAAGACTCCAGTA-TGTGTGCATTCATCAAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197911810 153 + 198332218 TGCTGGCCACTTTCACGAAACATTTGGTGCTGCTTCCTTCTGCCCATTGTCCTAAAGTTACCCCGAGACTCCCATCAAGATCTGGCAGGTGAACTT-----------------------------------------------------------------GCCCTTGTTTAAAAGTAAGGAAAGCTGAAGACTCCAGTAGTGTGTGCATTCATCAAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113669943 153 + 115148730 TGCTGGCCACTTTCACGAAACATTTGGTGCTGCTTCCTCCTGCCCATTGTCCTAAAGTTACCTCGAGACTCCCATAGAGATATGGCAGGTGAACTT-----------------------------------------------------------------GTCCTTGTTTAAAAGTAAGGAAAGCTGAAGACTCCAGTAGTGTGTGCATTCATCAGG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183503208 218 + 184069350 TGCTGGACACTTTCACAAAACATCTAGTGCTGCTTCCTCCTGCCCATTGTCCTAAAGTTACCTCGAGACTCCGGTCTAGATCTGGCAGGTGAACGCGTCCTTGTGTAAAAGTTGTCCTAAAGTTACCTCGAGACTCCGGTGTAGATCTGGCAGGTGAACGTGTCTTTGTGTAAAAGCAAGGAAAGCTGACGACGCCAGGAGGGTGTGCACCCATCAGG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188886533 153 + 189454096 TGCTGGACACTTTCACAAAACATCTAGTGCTGCTTCCTCCTGCCCATTGTCCTAAAGTTACCTCGAGACTCCGGTGTAGATCTGGCAGGTGAACGC-----------------------------------------------------------------GTCTTTGTGTAAAAGCAAGGAAAGCTGACGACGCCAGGAGGGTGTGCACCCATCAGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178309964 153 + 178775436 TGCTGGCCACTTTCGCAAAACATCTGGGGCTGCTTCCTCCTGCCCATTGTCCTAAAGTTACCTGGAGACTCCGGTCTAGATCTGGCAGGTGAACGC-----------------------------------------------------------------GTCTTTGTGTAAAAGTAAGGAAAGCTGACGACGCCAGGAGGGTGTGCACCCATCAGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135251256 153 + 135778131 TGCTGGACACTTTCACAAAACATCTGGAGCTGCTTCCTCCTGCCCATTGTCCTAAAGTTACCTCGAGACTCCCGTCTAGATCTGGCAGGTGAACTC-----------------------------------------------------------------GTCCTTGTGTAAAAGTAAGGAAAGCTGACGACGCCAGGAGGATGTGCACCCATCAGG
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17820600 152 -  59632846 TACTTGCCACTTACAC-AAATATTCGGTGCTGTATCTTTATACTCAAAGTCTTAAATTTACCTTGAGACTTCTCTCAAAAACTGTTGTATGAATTA-----------------------------------------------------------------TTCATGTTTTAAAAGTAAGGAAATCTGATGGCTTTGGTGGAGAAGACAATCTTTAAA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87507512  64 - 129401213 I
e calJac3.chr3             190397870  29 - 190850796 I

a score=210594.000000
s hg38.chr4_KI270925v1_alt    101444  83 +    555799 AGAAATA----------------------AAACCCAGCTCTTTTCACCCCATCACA-----CCCCAGC-----CTTTCACTCGGCATA-GGGTGTCCTGACCTTCACCTCCTCACT
s panTro4.chr4             192800650  83 + 193495092 AGAAATA----------------------AAACCCAGCTCTTTTCACCCCATCACA-----CCCCAGC-----CTTTCACTCGACATA-GGGTGTCCTGGCCTTCACCTCCTCACT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197911963  83 + 198332218 AGGAATA----------------------AAACCCAGCTCTTTTCACCCCATCACA-----CCCCAGC-----CTTTCACTTGGTGTA-GGGTGTCCTGGCCTTCACCTCCTCACG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113670096 105 + 115148730 AGGAATAAAACCATTCATCAGGAGGAATGAAACCCAGCTCCTTTCACCCCATCACA-----CCCCAGA-----CTTTCACTTGGCATA-GGATGTCCTGGCCTTCACCTCCTCACT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183503426  86 + 184069350 AGGAACGAGA-------------------GGACCCAGCTCTTTTCACCCCATCACA-----CCCCAGC-----CTTCCACTCGGCATA-GGGTGTCCCGCCCTTCACCTCCTCACT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188886686  86 + 189454096 AGGAACGAGA-------------------GGACCCAGCTCTTTTCACCCCATCACA-----CCCCAGC-----CTTCCACTCGGCATA-GGGTGTCCCGGCCTTCACCTCCTCACT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178310117  86 + 178775436 AGGAACGAGA-------------------GGACCCAGCTCTTTTCACCCCATCACA-----CCCCAGC-----CTCCCACTCGGCATA-GGGTGTCCCGGCCTTCACCTCTTCACT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135251409  84 + 135778131 AGGAACGAGA-------------------GGACCCAGCTCTTTTCACCCCATCACA-----CCCCAGC-----CTTCCACTCGGCATA-GGGTGTCCCGGCCTTCACCTCCT--CT
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87507576  87 - 129401213 AGAAACAAAA-------------------GGATTCAGTTTCTCTCGTCCTACACCA-----TCAAAGC-----CCTCTGCTTGTGTTATGAACTTTCTGAATTGCATTTGCTCATT
i mm10.chr8                I 64 C 0
s canFam3.chr16             17820752  96 -  59632846 AGGAACAAAA-------------------GGATTTGTTTCTTTTTGTCCCATAGCAAAGTCCTCCAGCAAAGTCCGCCATGTGGCATATGGTTGTCCTGGCCT-CAGCTCCTCACT
i canFam3.chr16            C 0 I 9
e calJac3.chr3             190397870  29 - 190850796 I

a score=8091.000000
s hg38.chr4_KI270925v1_alt    101527 6 +    555799 CGACTT
s panTro4.chr4             192800733 6 + 193495092 CGACTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197912046 6 + 198332218 CGACTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113670201 6 + 115148730 TGACTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183503512 6 + 184069350 CGGCTC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188886772 6 + 189454096 GGGCTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178310203 6 + 178775436 GGGCTC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135251493 6 + 135778131 GGGCTC
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87507663 6 - 129401213 TGATAC
i mm10.chr8                C 0 C 0
e canFam3.chr16             17820848 9 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I

a score=188582.000000
s hg38.chr4_KI270925v1_alt    101533 68 +    555799 TACCCACG------CT--CACAAACACAATGCCACCCTCCACAGGTCAGGGAAAACTCTACCCAAGCTT--ATGAGAC
s panTro4.chr4             192800739 68 + 193495092 TACCCACG------TT--CACAAACACAATGCCACCCTCCACAGGTCAGGGAAAACTCTACCCAAGCTT--ATGAGAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197912052 68 + 198332218 TACGCACG------CT--CACAAACACAATGCCACCCTCCACAGGTCAGGGAAAACTCTACCCAAGCTT--ATGAGAC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113670207 68 + 115148730 TACCCACG------CT--CACAAACACAATGCCACCCTCCACAGGTCAGGGAAAACTCTACCCAAGCTT--ATGAGAC
i nomLeu3.chr7b            C 0 I 246
s rheMac3.chr5             183503518 67 + 184069350 TACCCACG------CT--CACAAACACGATGCCACCCTCCACAGGTC-GGGAAAACTCTACCCATGCTT--ATGAGAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188886778 67 + 189454096 TACCCACG------CT--CACAAACACGATGCCACCCTCCACAGGTC-GGGGAAACTCTACCCATGCTT--ATGAGAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178310209 67 + 178775436 TACCCACG------CT--CACAAACACGATGCCACCCTCCACAGGTC-GGGAAAACTCTACCCATGCTT--ATGAGAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135251499 67 + 135778131 TACCCACG------CT--CACAAACACGATGCCACCCTCCACAGGTC-GGGAAAACTCTACCCATGCTT--ATGAGAC
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87507669 76 - 129401213 AACCCATGGAGTATCTAGTACTAAGTGATTGTCACCCTATCCATGGCATGGAAATCTACAACCATGATT--ACAGGGA
i mm10.chr8                C 0 C 0
s canFam3.chr16             17820857 70 -  59632846 TACCCATG------CT--CAAAAATAGAACACCATCCTTCATGTATCAGGGAAAACTACACACACACTTCCATGGAAT
i canFam3.chr16            I 9 I 2
e calJac3.chr3             190397870 29 - 190850796 I

a score=30784.000000
s hg38.chr4_KI270925v1_alt    101601 13 +    555799 AAAACAAAGGCTG
s panTro4.chr4             192800807 13 + 193495092 AAAACAAAGGCTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197912120 13 + 198332218 AAAACAAAGGCTG
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183503585 13 + 184069350 AAAACAAAGGCTG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188886845 13 + 189454096 CAAACAAAGGCTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178310276 13 + 178775436 AAAACAAAGGCTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135251566 13 + 135778131 AAAACAAAGGCTG
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87507745  8 - 129401213 -----AGAAACTT
i mm10.chr8                C 0 C 0
s canFam3.chr16             17820929 13 -  59632846 AAAAAAAAAGCTG
i canFam3.chr16            I 2 C 0
e calJac3.chr3             190397870 29 - 190850796 I
e nomLeu3.chr7b            113670275 246 + 115148730 I

a score=1405523.000000
s hg38.chr4_KI270925v1_alt    101614 607 +    555799  
s panTro4.chr4             192800820 607 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197912133 606 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113670521 607 + 115148730  
i nomLeu3.chr7b            I 246 C 0
s rheMac3.chr5             183503598 578 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188886858 577 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178310289 576 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135251579 579 + 135778131  
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87507753 592 - 129401213  
i mm10.chr8                C 0 C 0
s canFam3.chr16             17820942 618 -  59632846  
i canFam3.chr16            C 0 I 14
e calJac3.chr3             190397870  29 - 190850796 I

a score=2057590.000000
s hg38.chr4_KI270925v1_alt    102221 906 +    555799  
s panTro4.chr4             192801427 908 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197912739 905 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113671128 908 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183504176 912 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188887435 912 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178310865 918 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135252158 913 + 135778131  
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87508345 895 - 129401213  
i mm10.chr8                C 0 I 7177
e canFam3.chr16             17821560  14 -  59632846 I
e calJac3.chr3             190397870  29 - 190850796 I

a score=769224.000000
s hg38.chr4_KI270925v1_alt    103127 314 +    555799 AATTGCATTATTATTGCTGAGACAAATATTCAGAACTAAAACTTTAGCACCTTTCTGATTTGTGAAAATACTCCTCTTTGGGCTCTAGTAAC-AGCCTTAGAAATTCAGTATCCTGAAATGTGTATCGACACCTAAATAGCCTCCATGATAACACTTGAGGTAGTAAACTGACAGTATAGAATTTTAATTCTATAATACAATATAACAAAAT--------ATGAAATGCAACACTGCATATATTTATGTGTATTACTGGTCATTTTAGAATA--CTATTATGTTGATGACACAGACACCTCCATACATAAAACCCTAAGGGACCA
s panTro4.chr4             192802335 315 + 193495092 AATTGCATTATTATTGCTGAGACAAATATTCAGAACTAAAACTTTAGCACCTTTCTGATTTGTGAAAATACTCCTCTTTTGGCTCTAGTAACAAGCCTTAGAAATTCAGTATCCTGAAATGTGTATCGACACCTAAATAGCCTCCATGATAACACTTGAGGTAGTAAACTGACAGTATAGAATTTTAATTCTATAATAGAATATAACAAAAT--------ATAAAATGCAACTCTGCATATATTTATGTGTATTACTGGTCATTTTAGAATA--TGATTATGTTGATGACAGAGACGCCTCCATACATAAAACCCTAAGGGACCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197913644 314 + 198332218 AATTGCATTATTATTGCTAAGACAAATATTCAGAACTAAAACTTTAGCACCTTTCTGATTTGTGAAAATACTCCTCTTTTGGCTCTAGTAAC-AGCCTTAGAAATTCAGTATCCTGAAATGTGTATCGACACCTAAATAGCCTCCATGATAACACTTGGTGTAGTAAACTGACACTATAGAATTTTAATTCTATAATAGAATATAACAAAAT--------ACAAAATGCAACGCTGCATATATTTATGTGTATTACTGGTCATTTTAGAATA--TTATTATGTTGATGACAGAGATACCTCCATACATAAAACCCTAAGTGACCA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113672036 314 + 115148730 AATTGCATTATTATTGCTAAGACACATATTCAGAACTAAAACCTTAGCACCTTTCTGATTTGTGAAAATACTCCTCTTTCAGCTCTAGTAAC-AGCCTTAGAAATTCAGTGTCCTGAAATGTGTATCGACACCTAAATAGCCTCCATGATAACACTTGATGTAGTAAAAGGACACTACAGCATTTTAGTTCTATTATAGAATATAACAAAAT--------ATAAAATGTAACACTGCATATATTTATGTGTATTACTGGTCATTTTAGAATA--TTATTATGTTGATGACAGAGAAGCCTCCATGCATAAAACCGTAAGTGACCA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183505088 309 + 184069350 AATTGCATTATTATAGCTAAGACAAATATTCAGAACTAAAACTTTAGCACTTTTCTGATTTGTGAAAA---TCCTCTTTCTGCTCTAGTAAC-AGCCTTAGAAGTTCAGTATCCTGAAATGTGTATCGACACCTGAATAGCCTCCATGATAACACTTGATGTAGTAAACAGACACTGTGGAATTTTAATTCTA-AATAGAATATAACAAAAT--------ATAAAATGTAACACTGCATATATTTATGTGTATTACTGGTCA-TTTAGAGTA--TTATTATGTTGACGCCAGAGAAGCCTCCATACATAAAACCTTAAGTGACCA
i rheMac3.chr5             C 0 I 22
s macFas5.chr5             188888347 309 + 189454096 AATTGCATTATTATAGCTAAGACAAATATTCAGAACTAAAACTTTAGCACTTTTCTGATTTGTGAAAA---TCCTCTTTCTGCTCTAGTAAC-AGCCTTAGAAGTTCAGTATCCTGAAATGTGTATCGACACCTGAATAGCCTCCATGATAACACTTGATGTAGTAAACAGACACTGTGGAATTTTAATTCTA-AATAGAATATAACAAAAT--------ATAAAATGTAACACTGCATATATTTATGTGTATTACTGGTCA-TTTAGAGTA--TTATTATGTTGACGCCAGAGAAGCCTCCATACATAAAACCTTAAGTGACCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178311783 309 + 178775436 AATTGCATTATTATAGCTAAGACAAATATTCAGAACTAAAACTTTAGCACTTTTCTGATTTGTGAAAA---TCCTCTTTCTGCTCTAGTAAC-AGCCTTAGAAGTTCAGTATCCTGAAATGTGTATCGACACCTGAATAGCCTCCATGATAACACTTGATGTAGTAAACAGACACTGTGGAATTTTAATTCTA-AAtagaatataacaaaat--------ataaaatgtaacactgcatatatttatgtgtattacTGGTCA-TTTAGAGTA--TTATTATGTTGATGCCAGAGAAGCCTCCATACATAAAACCTTAAGTGACCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135253071 309 + 135778131 AATTGCATTATTATAGCTAAGACAAATATTCAGAACTAAAACTTTAGCACCTTTCTGATTTGTGAAAA---TACTCTTTCTGCTCTAGTAAC-AGCCTTAGAAGTTCAGTATCCTGAAATGTGTATCGACACCTGAATAGCCTCCATGATAACACTTGATGTAGTAAATGGACACTATGGAATTTTAATTCTA-AATAGAATATAACAAAAT--------AGAAAATGTAACACTGCATATATTTATGTGTATTACTGGTCA-TTTAGAGTA--TTATTATGTTGATGCCAGAGAAGCCTCCATACATAAAACCCTAAGTGACGA
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87516417 304 - 129401213 AATTGCATTTGTATTCCCAGGGAAAATATTCAGAAGTATAACATAAAGAGTATTCATGTTCATGAAAATATTCCTCT----GATCTAGAGAC-AA---TAGAAAGACAGTAT-CTGAGGCTCTCATGAAGAACTGAGTAGTCCCAATTGTAACACATCACAAGGTGAACTAGAATAATTGAATTTTAATACAACAATAAAATTCAACAAAATGTTGGGCCATAGAACATAAC----CACTTGCTTATATGTATACCTGGAAATTTCCAGATATTTTATTATGATAAT--------ATTCTCCACTCATAAAATCCTAACTAACCA
i mm10.chr8                I 7177 C 0
e canFam3.chr16             17821560  14 -  59632846 I
e calJac3.chr3             190397870  29 - 190850796 I

a score=3664.000000
s hg38.chr4_KI270925v1_alt    103441 4 +    555799 AGAA--
s panTro4.chr4             192802650 4 + 193495092 AGAA--
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197913958 4 + 198332218 AGAA--
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113672350 4 + 115148730 AGAA--
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188888656 4 + 189454096 AGAG--
i macFas5.chr5             C 0 I 1
s papAnu2.chr5             178312092 4 + 178775436 AGAG--
i papAnu2.chr5             C 0 I 1
s chlSab2.chr7             135253380 4 + 135778131 AGAG--
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87516721 4 - 129401213 --AACA
i mm10.chr8                C 0 C 0
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e rheMac3.chr5             183505397 22 + 184069350 I

a score=546.000000
s hg38.chr4_KI270925v1_alt    103445 1 +    555799 T
s panTro4.chr4             192802654 1 + 193495092 T
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197913962 1 + 198332218 T
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113672354 1 + 115148730 T
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87516725 0 - 129401213 C
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135253384 0 + 135778131 C
e papAnu2.chr5             178312096 1 + 178775436 I
e macFas5.chr5             188888660 1 + 189454096 I
e rheMac3.chr5             183505397 22 + 184069350 I

a score=4230.000000
s hg38.chr4_KI270925v1_alt    103446 3 +    555799 CTA
s panTro4.chr4             192802655 3 + 193495092 CTA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113672355 3 + 115148730 CTA
i nomLeu3.chr7b            C 0 T 3
s macFas5.chr5             188888661 3 + 189454096 CTA
i macFas5.chr5             I 1 C 0
s papAnu2.chr5             178312097 3 + 178775436 CTA
i papAnu2.chr5             I 1 C 0
s mm10.chr8                 87516725 3 - 129401213 CTA
i mm10.chr8                C 0 C 0
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135253384 0 + 135778131 C
e rheMac3.chr5             183505397 22 + 184069350 I
e ponAbe2.chr4             197913963 0 + 198332218 C

a score=1946.000000
s hg38.chr4_KI270925v1_alt    103449 4 +    555799 AGCA
s panTro4.chr4             192802658 4 + 193495092 AGCA
i panTro4.chr4             C 0 C 0
s macFas5.chr5             188888664 4 + 189454096 ACCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312100 4 + 178775436 ACCA
i papAnu2.chr5             C 0 C 0
s mm10.chr8                 87516728 4 - 129401213 AGTA
i mm10.chr8                C 0 I 3032
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135253384 0 + 135778131 C
e rheMac3.chr5             183505397 22 + 184069350 I
e nomLeu3.chr7b            113672358 3 + 115148730 T
e ponAbe2.chr4             197913963 0 + 198332218 C

a score=-265.000000
s hg38.chr4_KI270925v1_alt    103453 1 +    555799 T
s panTro4.chr4             192802662 1 + 193495092 T
i panTro4.chr4             C 0 T 8
s macFas5.chr5             188888668 1 + 189454096 G
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312104 1 + 178775436 G
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135253384 0 + 135778131 C
e rheMac3.chr5             183505397 22 + 184069350 I
e nomLeu3.chr7b            113672358 3 + 115148730 T
e ponAbe2.chr4             197913963 0 + 198332218 C

a score=2305.000000
s hg38.chr4_KI270925v1_alt    103454 12 +    555799 CCCTGGGGTGGA
s macFas5.chr5             188888669 12 + 189454096 CCTGGAGGTGAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312105 12 + 178775436 CCTGGAGGTGAA
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135253384  0 + 135778131 C
e rheMac3.chr5             183505397 22 + 184069350 I
e nomLeu3.chr7b            113672358  3 + 115148730 T
e ponAbe2.chr4             197913963  0 + 198332218 C
e panTro4.chr4             192802663  8 + 193495092 T

a score=600.000000
s hg38.chr4_KI270925v1_alt    103466 1 +    555799 G
s macFas5.chr5             188888681 1 + 189454096 G
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312117 1 + 178775436 G
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135253384 1 + 135778131 G
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e rheMac3.chr5             183505397 22 + 184069350 I
e nomLeu3.chr7b            113672358 3 + 115148730 T
e ponAbe2.chr4             197913963 0 + 198332218 C
e panTro4.chr4             192802663 8 + 193495092 T

a score=7608.000000
s hg38.chr4_KI270925v1_alt    103467 15 +    555799 CTAAGCATCCTGGGG
s panTro4.chr4             192802655 15 + 193495092 CTAAGCATCCTGGGG
i panTro4.chr4             T 8 C 0
s macFas5.chr5             188888682 15 + 189454096 ATAAGCAGCCTGCAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312118 15 + 178775436 ATAAGCAGCCTGCAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135253385 15 + 135778131 CTAACCAGCCTGGAG
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e rheMac3.chr5             183505397 22 + 184069350 I
e nomLeu3.chr7b            113672358  3 + 115148730 T
e ponAbe2.chr4             197913963  0 + 198332218 C

a score=33123.000000
s hg38.chr4_KI270925v1_alt    103482 27 +    555799 GTGGAGCTAAGCAGCCTGGGGGTGGAG
s panTro4.chr4             192802670 27 + 193495092 GTGAAGCTAAGCATCCTGGAGGTGAAG
i panTro4.chr4             C 0 T 42
s rheMac3.chr5             183505419 27 + 184069350 GTGAAGCTAACCAGCCTGGAGGTGAAG
i rheMac3.chr5             I 22 C 0
s macFas5.chr5             188888697 27 + 189454096 GTGAAGCTAACTAGCCTGGAGGTGAAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312133 27 + 178775436 GTGAAGCTAACTAGCCTGGAGGTGAAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135253400 27 + 135778131 GTGAAGCTAACCAGCCTGGAGGTGAAG
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e nomLeu3.chr7b            113672358  3 + 115148730 T
e ponAbe2.chr4             197913963  0 + 198332218 C

a score=17008.000000
s hg38.chr4_KI270925v1_alt    103509 21 +    555799 CTAAGCAGCCTGGAGGTGGAG
s rheMac3.chr5             183505446 21 + 184069350 CTAAGCAGCCTGGAGATGAAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188888724 21 + 189454096 CTAACCAGCCTGGAGGTGAAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312160 21 + 178775436 CTCACCAGCCTGGAGGTGAAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135253427 21 + 135778131 CTAACCAGCCTGGAGGTGAAG
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e nomLeu3.chr7b            113672358  3 + 115148730 T
e ponAbe2.chr4             197913963  0 + 198332218 C
e panTro4.chr4             192802697 42 + 193495092 T

a score=63765.000000
s hg38.chr4_KI270925v1_alt    103530 57 +    555799 CTAAGCATCCTGGAGGTGGAGCTAAGCATCCTGGAGGTGGAGCTAAGCATCCTGGGG
s panTro4.chr4             192802655 57 + 193495092 CTAAGCATCCTGGGGGTGAAGCTAAGCATCCTGGAGGTGAAGCTAAGTATCCTGGGG
i panTro4.chr4             T 42 C 0
s rheMac3.chr5             183505467 57 + 184069350 CTAACCAGCCTGGAGGTGAGGCTAACCAGCCTGGAGGTGAAGCTAACCAGCCTGGAG
i rheMac3.chr5             C 0 T 105
s macFas5.chr5             188888745 57 + 189454096 CTAAGCAGCCTGGAGATGAAGCTAACCAGCCTGGAGGTGAGGCTAACCAGCCTGGAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312181 57 + 178775436 CTAAGCAGCCTGGAGGTGAAGTTAAGCAGCCTGGAGATGAAGCTAACCAGCCTGGAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135253448 57 + 135778131 ATAACCAGCCTGGAGGTGAAGCTAACCAGCCTGGAGGTGAAGCTAACCAGCCTGGAG
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e nomLeu3.chr7b            113672358  3 + 115148730 T
e ponAbe2.chr4             197913963  0 + 198332218 C

a score=15288.000000
s hg38.chr4_KI270925v1_alt    103587 21 +    555799 GTGAAGCTAAGCATCCTGGGG
s panTro4.chr4             192802712 21 + 193495092 GTGAAGCTAAGTATCCTGGGG
i panTro4.chr4             C 0 C 0
s macFas5.chr5             188888802 21 + 189454096 GTGAAGCTAACCAGCCTGGAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312238 21 + 178775436 GTGAGGCTAACCAGTCTGGAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135253505 21 + 135778131 GTGAAGCTAACCAGCCTGGAG
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e rheMac3.chr5             183505524 105 + 184069350 T
e nomLeu3.chr7b            113672358  3 + 115148730 T
e ponAbe2.chr4             197913963  0 + 198332218 C

a score=6485.000000
s hg38.chr4_KI270925v1_alt    103608 5 +    555799 GTGGA
s panTro4.chr4             192802733 5 + 193495092 GTGAA
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183505419 5 + 184069350 GTGAA
i rheMac3.chr5             T 105 C 0
s macFas5.chr5             188888823 5 + 189454096 GTGAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312259 5 + 178775436 GTGAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135253526 5 + 135778131 GTGAA
i chlSab2.chr7             C 0 T 147
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e nomLeu3.chr7b            113672358 3 + 115148730 T
e ponAbe2.chr4             197913963 0 + 198332218 C

a score=41944.000000
s hg38.chr4_KI270925v1_alt    103613 36 +    555799 GCTAAGCAGCCTGGAGGTGGAGCTAAGCAGCCTGGA
s panTro4.chr4             192802738 36 + 193495092 GCTAAGCAGCCTGGGGGTGAAGCTAAGCATCCTGGA
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183505424 36 + 184069350 GCTAACCAGCCTGGAGGTGAAGCTAAGCAGCCTGGA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188888828 36 + 189454096 GATAAGCAGCCTGCATGTGAAGCTAACCAGCCTGGA
i macFas5.chr5             C 0 T 147
s papAnu2.chr5             178312264 36 + 178775436 GATAACCAGCCTGGAGGTGAAGCTAAGCAGCCTGGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135253384 36 + 135778131 GCTAACCAGCCTGGAGGTGAAGCTAACCAGCCTGGA
i chlSab2.chr7             T 147 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e nomLeu3.chr7b            113672358  3 + 115148730 T
e ponAbe2.chr4             197913963  0 + 198332218 C

a score=53617.000000
s hg38.chr4_KI270925v1_alt    103649 48 +    555799 GGTGGAGCTAAGCATCCTGGGGGTGGAGCTAAGCATCCTGGAGGTGGA
s panTro4.chr4             192802774 48 + 193495092 GGTGAAGCTAAGCATCCTGGGGGTGAAGCTAAGCATCCTGGGGGTGAA
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183505460 48 + 184069350 GATGAAGCTAACCAGCCTGGAGGTGAGGCTAACCAGCCTGGAGGTGAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188888717 48 + 189454096 GGTGAAGCTAACCAGCCTGGAGGTGAAGCTAAGCAGCCTGGAGATGAA
i macFas5.chr5             T 147 C 0
s papAnu2.chr5             178312300 48 + 178775436 GATGAAGCTAACCAGCCTGGAGGTGAGGCTAACCAGCCTGCAGGTGAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135253420 48 + 135778131 GGTGAAGCTAACCAGCCTGGAGGTGAAGATAACCAGCCTGGAGGTGAA
i chlSab2.chr7             C 0 T 84
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e nomLeu3.chr7b            113672358  3 + 115148730 T
e ponAbe2.chr4             197913963  0 + 198332218 C

a score=26671.000000
s hg38.chr4_KI270925v1_alt    103697 37 +    555799 GCTAAGCAGCCTGGGGGTGAAGCTAGGCATCCTGGGG
s panTro4.chr4             192802822 37 + 193495092 GCTAAGCAGCCTGGGGGTGAAGCTAAGCATCCTGGGG
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183505508 37 + 184069350 GCTAACCAGCCTGGAGGTGAAGATAAGCAGCCTGCAT
i rheMac3.chr5             C 0 T 126
s macFas5.chr5             188888765 37 + 189454096 GCTAACCAGCCTGGAGGTGAGGCTAACCAGCCTGGAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312348 37 + 178775436 GCTAACCAGCCTGGAGGTGAAGTTAAGCAGCCTGGAG
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135253468 84 + 135778131 T
e nomLeu3.chr7b            113672358  3 + 115148730 T
e ponAbe2.chr4             197913963  0 + 198332218 C

a score=753.000000
s hg38.chr4_KI270925v1_alt    103734 2 +    555799 GT
s panTro4.chr4             192802859 2 + 193495092 GT
i panTro4.chr4             C 0 C 0
s macFas5.chr5             188888802 2 + 189454096 GT
i macFas5.chr5             C 0 T 147
s papAnu2.chr5             178312385 2 + 178775436 AT
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135253468 84 + 135778131 T
e rheMac3.chr5             183505545 126 + 184069350 T
e nomLeu3.chr7b            113672358 3 + 115148730 T
e ponAbe2.chr4             197913963 0 + 198332218 C

a score=7674.000000
s hg38.chr4_KI270925v1_alt    103736 40 +    555799 GGAGCTAAGCATCCTGGGGGTGGAGCTAAGCATCCTGGGG
s panTro4.chr4             192802861 40 + 193495092 GAAGCTAAGCATCGTGGGGGTGAAGCTAAGCAGCCTGGGG
i panTro4.chr4             C 0 C 0
s papAnu2.chr5             178312387 40 + 178775436 GAAGCTAACCAGCCTGGAGGTGAGGCTAACCAGCCTGCAG
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135253468 84 + 135778131 T
e macFas5.chr5             188888804 147 + 189454096 T
e rheMac3.chr5             183505545 126 + 184069350 T
e nomLeu3.chr7b            113672358  3 + 115148730 T
e ponAbe2.chr4             197913963  0 + 198332218 C

a score=2838.000000
s hg38.chr4_KI270925v1_alt    103776 5 +    555799 GTGAA
s panTro4.chr4             192802901 5 + 193495092 GTGAA
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183505419 5 + 184069350 GTGAA
i rheMac3.chr5             T 126 C 0
s papAnu2.chr5             178312427 5 + 178775436 GTGAA
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135253468 84 + 135778131 T
e macFas5.chr5             188888804 147 + 189454096 T
e nomLeu3.chr7b            113672358 3 + 115148730 T
e ponAbe2.chr4             197913963 0 + 198332218 C

a score=1000.000000
s hg38.chr4_KI270925v1_alt    103781 1 +    555799 G
s panTro4.chr4             192802906 1 + 193495092 G
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183505424 1 + 184069350 G
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178312432 1 + 178775436 G
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135253384 1 + 135778131 G
i chlSab2.chr7             T 84 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e macFas5.chr5             188888804 147 + 189454096 T
e nomLeu3.chr7b            113672358 3 + 115148730 T
e ponAbe2.chr4             197913963 0 + 198332218 C

a score=44864.000000
s hg38.chr4_KI270925v1_alt    103782 38 +    555799 CTAAGCATCCTGGAGGTGGAGCTAAGCAGCCTGGAGGT
s panTro4.chr4             192802907 38 + 193495092 CTAAGCATCCTGGAGGTGAAGCTAAGCATCCTGGAGGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197913963 38 + 198332218 CTAAGCAGCCTGGAGGTGAAGCTAAGCAGCCGGGAGGT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183505425 38 + 184069350 CTAACCAGCCTGGAGGTGAAGCTAAGCAGCCTGGAGAT
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178312433 38 + 178775436 CTAACCAGCCTGGAGGTGAAGATAACCAGCCTGGAGGT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135253385 38 + 135778131 CTAACCAGCCTGGAGGTGAAGCTAACCAGCCTGGAGGT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e macFas5.chr5             188888804 147 + 189454096 T
e nomLeu3.chr7b            113672358  3 + 115148730 T

a score=43285.000000
s hg38.chr4_KI270925v1_alt    103820 29 +    555799 GGAGCTAAGCAGCCTGGAGGTGGAGCTAA
s panTro4.chr4             192802945 29 + 193495092 GAAGCTAAGCAGCCTGGGGGTGAAGCTAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197914001 29 + 198332218 GATGCTAAGCAGCCTGGAGGTGATGCTAA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183505463 29 + 184069350 GAAGCTAACCAGCCTGGAGGTGAGGCTAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188888657 29 + 189454096 GAGGCTAACCAGCCTGGAGGTGAAGATAA
i macFas5.chr5             T 147 C 0
s papAnu2.chr5             178312471 29 + 178775436 GAAGATAACCAGCCTGCAAGTGAAGGTAA
i papAnu2.chr5             C 0 T 336
s chlSab2.chr7             135253423 29 + 135778131 GAAGCTAACCAGCCTGGAGGTGAAGATAA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e nomLeu3.chr7b            113672358  3 + 115148730 T

a score=9711.000000
s hg38.chr4_KI270925v1_alt    103849 6 +    555799 GCAGCC
s panTro4.chr4             192802974 6 + 193495092 GCAGCC
i panTro4.chr4             C 0 T 126
s ponAbe2.chr4             197914030 6 + 198332218 GCAGCC
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183505492 6 + 184069350 CCAGCC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188888686 6 + 189454096 GCAGCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312164 6 + 178775436 CCAGCC
i papAnu2.chr5             T 336 C 0
s chlSab2.chr7             135253452 6 + 135778131 CCAGCC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e nomLeu3.chr7b            113672358 3 + 115148730 T

a score=101031.000000
s hg38.chr4_KI270925v1_alt    103855 74 +    555799 TGGGGGTGAAGCTAAGCATCCTGGGGGTGAAGCTAAGCATCCTGGGGGTGGAGCTAAGCAGCCTGGAGGTGGAG
s panTro4.chr4             192802854 74 + 193495092 TGGGGGTGAAGCTAAGCATCGTGGGGGTGAAGCTAAGCAGCCTGGGGGTGAAGCTAAGCATCCTGGAGGTGAAG
i panTro4.chr4             T 126 C 0
s ponAbe2.chr4             197914036 53 + 198332218 ---------------------TGGAAGTGAAGCTAAGCATCCTGGAGGTGAATCTAAGCAGCAGGGAGGTGAAG
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183505498 74 + 184069350 TGGAGGTGAAGCTAACCAGCCTGGAGGTGAAGATAAGCAGCCTGCATGTGAAGCTAACCAGCCTGGAGGTGAAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188888692 74 + 189454096 TGCATGTGAAGCTAACTAGCCTGGAGGTGAAGCTAACCAGCCTGGAGGTGAAGCTAAGCAGCCTGGAGATGAAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312170 74 + 178775436 TGGAGGTGAAGCTAAGCAGCCTGGAGGTGAAGTTAAGCAGCCTGGAGATGAAGCTAACCAGCCTGGAGGTGAGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135253458 74 + 135778131 TGGAGGTGAAGCTAACCAGCCTGGAGGTGAAGCTAACCAGCCTGGAGGTGAAGCTAACCAGCCTGGAGGTGAAG
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e nomLeu3.chr7b            113672358  3 + 115148730 T

a score=104576.000000
s hg38.chr4_KI270925v1_alt    103929 50 +    555799 CTAAGCAGCCTGGGGGTGGAGCTAAGCAGCCTGGGGGTGGAGCTAAGCAG
s panTro4.chr4             192802928 50 + 193495092 CTAAGCATCCTGGAGGTGAAGCTAAGCAGCCTGGGGGTGAAGCTAAGCAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197914089 50 + 198332218 CTAAGCATCCTGGGGGTGAAGCTAAGCAGCCTGGGGGCGAAGCTAAGCAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113672355 50 + 115148730 CTAAGCAGCCTGGGGGTGAAGCTAAGCAGCCTGGGGGTGAAGCTAAGCAG
i nomLeu3.chr7b            T 3 T 27
s rheMac3.chr5             183505572 50 + 184069350 ATAAGCAGCCTGCATGTGAAGCTAACCAGCCTGGAGGTGAAGCTAAGCAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188888766 50 + 189454096 CTAACCAGCCTGGAGGTGAGGCTAACCAGCCTGGAGGTGAAGCTAACCAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312244 50 + 178775436 CTAACCAGTCTGGAGGTGAAGATAACCAGCCTGGAGGTGAAGCTAAGCAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135253532 50 + 135778131 ATAACCAGCCTGGAGGTGAAGATAACCAGCCTGCAGGTGAAGTTAAGCAG
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I

a score=10265.000000
s hg38.chr4_KI270925v1_alt    103979 9 +    555799 CCTGGAGGT
s panTro4.chr4             192802978 9 + 193495092 CCGGGAGGT
i panTro4.chr4             C 0 T 63
s ponAbe2.chr4             197914139 8 + 198332218 CCTGGGGT-
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183505622 9 + 184069350 CCTGGAGAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188888816 9 + 189454096 CCTGGAGGT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312294 9 + 178775436 CCTGGAGAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135253582 9 + 135778131 CCTGGAGTT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e nomLeu3.chr7b            113672405 27 + 115148730 T

a score=78139.000000
s hg38.chr4_KI270925v1_alt    103988 50 +    555799 GGAGCTAAGCATCCTGGGGGTGAAGCTAAGCATCCTGGGGGTGAAGCTAA
s panTro4.chr4             192802924 50 + 193495092 GAAGCTAAGCATCCTGGAGGTGAAGCTAAGCAGCCTGGGGGTGAAGCTAA
i panTro4.chr4             T 63 C 0
s ponAbe2.chr4             197914147 50 + 198332218 GAAGCTAAGCAGCCTGAAGGTGAAGTTAAGCAGCCTGGGGGTGAAGCTAA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183505631 50 + 184069350 GAAGCTAACCAGCCTGGAGGTGAAGATAACCAGCCTGGAGGTGAACCTAA
i rheMac3.chr5             C 0 T 91
s macFas5.chr5             188888825 50 + 189454096 GAAGATAAGCAGCCTGCATGTGAAGCTAACCAGCCTGGAGGTGAAGCTAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312303 50 + 178775436 GAAGCTAACCAGCCTGGAGGTGAGGCTAACCAGCCTGCAGGTGAAGCTAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135253591 50 + 135778131 GAAGATAACCAGCCTGGAGGTGAAGCTAACCAGCCTGGGGGTGAAGCTAA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e nomLeu3.chr7b            113672405 27 + 115148730 T

a score=11546.000000
s hg38.chr4_KI270925v1_alt    104038 13 +    555799 GCATCCTGGAGGT
s panTro4.chr4             192802974 13 + 193495092 GCAGCCGGGAGGT
i panTro4.chr4             C 0 T 42
s ponAbe2.chr4             197914197 13 + 198332218 GTATCCTGGGGGT
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             188888875 13 + 189454096 GCAGCCTGGAGAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312353 13 + 178775436 CCAGCCTGGAGGT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135253641 13 + 135778131 CCAGCCTGGAGTT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e rheMac3.chr5             183505681 91 + 184069350 T
e nomLeu3.chr7b            113672405 27 + 115148730 T

a score=23882.000000
s hg38.chr4_KI270925v1_alt    104051 21 +    555799 GGAGCTAAGCAGCCTGGAGGT
s panTro4.chr4             192802945 21 + 193495092 GAAGCTAAGCAGCCTGGGGGT
i panTro4.chr4             T 42 C 0
s ponAbe2.chr4             197914210 21 + 198332218 GAAGCTAAGCAGCCTGGAGGT
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             188888888 21 + 189454096 GAAGCTAACCAGCCTGGAGGT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312366 21 + 178775436 GAAGTTAAGCAGCCTGGAGAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135253654 21 + 135778131 CAAGATAACCAGCCTGGAGGT
i chlSab2.chr7             C 0 T 126
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e rheMac3.chr5             183505681 91 + 184069350 T
e nomLeu3.chr7b            113672405 27 + 115148730 T

a score=1500.000000
s hg38.chr4_KI270925v1_alt    104072 1 +    555799 G
s panTro4.chr4             192802966 1 + 193495092 G
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197914231 1 + 198332218 G
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             188888909 1 + 189454096 G
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312387 1 + 178775436 G
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135253549 1 + 135778131 G
i chlSab2.chr7             T 126 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e rheMac3.chr5             183505681 91 + 184069350 T
e nomLeu3.chr7b            113672405 27 + 115148730 T

a score=13001.000000
s hg38.chr4_KI270925v1_alt    104073 10 +    555799 GAGCTAAGCA
s panTro4.chr4             192802967 10 + 193495092 AAGCTAAGCA
i panTro4.chr4             C 0 T 126
s ponAbe2.chr4             197914232 10 + 198332218 ATGCTAAGCA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183505590 10 + 184069350 AAGCTAACCA
i rheMac3.chr5             T 91 C 0
s macFas5.chr5             188888910 10 + 189454096 AAGATAACCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312388 10 + 178775436 AAGCTAACCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135253550 10 + 135778131 AAGATAACCA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e nomLeu3.chr7b            113672405 27 + 115148730 T

a score=113462.000000
s hg38.chr4_KI270925v1_alt    104083 76 +    555799 TCCTGGGGGTGGAGCTAAGCATCCTGGAGGTGGAGCTAAGCAGCCTGGAGGTGGAGCTAAGCAGCCTGGGGGTGAA
s panTro4.chr4             192802851 76 + 193495092 TCCTGGGGGTGAAGCTAAGCATCGTGGGGGTGAAGCTAAGCAGCCTGGGGGTGAAGCTAAGCATCCTGGAGGTGAA
i panTro4.chr4             T 126 C 0
s ponAbe2.chr4             197914242 76 + 198332218 CCTTGGAGGTGAAGCTAAGCATCCTGGAGGTGAAGCTAAGCAGCCGGGAGGTGAAGCTAAGCATCCTGGGGGTGAA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183505600 76 + 184069350 GCCTGGAGGTGAAGCTAAGCAGCCTGGAGATGAAGCTAACCAGCCTGGAGGTGAAGATAACCAGCCTGGAGGTGAA
i rheMac3.chr5             C 0 T 63
s macFas5.chr5             188888920 76 + 189454096 GCCTGGAGGTGAACCTAACCAGTCTGGAGTTGAAGATAACCAGCCTGGAGGTGAAGATAACCAGCCTGCAGGTGAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312398 76 + 178775436 GCCTGGAGGTGAGGCTAACCAGCCTGCAGGTGAAGCTAACCAGCCTGGAGGTGAAGATAACCAGCCTGGAGGTGAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135253560 76 + 135778131 GCCTGCAGGTGAAGTTAAGCAGCCTGGAGTTGAAGATAACCAGCCTGGAGGTGAAGCTAACCAGCCTGGGGGTGAA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e nomLeu3.chr7b            113672405 27 + 115148730 T

a score=52757.000000
s hg38.chr4_KI270925v1_alt    104159 39 +    555799 GCTGAGCATCCTGGAGGTGAAGCTAAGCATCCTGGAGGT
s panTro4.chr4             192802927 39 + 193495092 GCTAAGCATCCTGGAGGTGAAGCTAAGCAGCCTGGGGGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197914318 39 + 198332218 GCTAAGCAGCCGGGAGGTGAAGCTAAGCATCCTGGAGGT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183505613 39 + 184069350 GCTAAGCAGCCTGGAGATGAAGCTAACCAGCCTGGAGGT
i rheMac3.chr5             T 63 C 0
s macFas5.chr5             188888996 39 + 189454096 GGTAACCAGCCTGCAGGTGAAGGTAACCAGCCTGGAGTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312474 39 + 178775436 GATAACCAGCCTGCAAGTGAAGGTAACCAGCCTGGAGTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135253636 39 + 135778131 GCTAACCAGCCTGGAGTTCAAGATAACCAGCCTGGAGGT
i chlSab2.chr7             C 0 T 126
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e nomLeu3.chr7b            113672405 27 + 115148730 T

a score=32673.000000
s hg38.chr4_KI270925v1_alt    104198 21 +    555799 GGAGCTAAGCAGCCTGGAGGT
s panTro4.chr4             192802966 21 + 193495092 GAAGCTAAGCAGCCGGGAGGT
i panTro4.chr4             C 0 T 84
s ponAbe2.chr4             197914357 21 + 198332218 GAAGCTAAGCAGCCTGGGGGT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183505652 21 + 184069350 GAAGATAACCAGCCTGGAGGT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188889035 21 + 189454096 GAAGATAACCAGCCTGGAGGT
i macFas5.chr5             C 0 T 63
s papAnu2.chr5             178312513 21 + 178775436 GAAGATAATCAGCCTGGAGGT
i papAnu2.chr5             C 0 T 42
s chlSab2.chr7             135253549 21 + 135778131 GAAGATAACCAGCCTGCAGGT
i chlSab2.chr7             T 126 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e nomLeu3.chr7b            113672405 27 + 115148730 T

a score=1000.000000
s hg38.chr4_KI270925v1_alt    104219 1 +    555799 G
s panTro4.chr4             192802903 1 + 193495092 G
i panTro4.chr4             T 84 C 0
s ponAbe2.chr4             197914378 1 + 198332218 G
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183505673 1 + 184069350 G
i rheMac3.chr5             C 0 T 168
s chlSab2.chr7             135253570 1 + 135778131 G
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e papAnu2.chr5             178312534 42 + 178775436 T
e macFas5.chr5             188889056 63 + 189454096 T
e nomLeu3.chr7b            113672405 27 + 115148730 T

a score=7692.000000
s hg38.chr4_KI270925v1_alt    104220 11 +    555799 GAGCTAAGCAG
s panTro4.chr4             192802904 11 + 193495092 AAGCTAAGCAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197914379 11 + 198332218 AAGCTAAGCAG
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183505506 11 + 184069350 AAGCTAACCAG
i rheMac3.chr5             T 168 I 84
s chlSab2.chr7             135253571 11 + 135778131 AAGTTAAGCAG
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e papAnu2.chr5             178312534 42 + 178775436 T
e macFas5.chr5             188889056 63 + 189454096 T
e nomLeu3.chr7b            113672405 27 + 115148730 T

a score=5097.000000
s hg38.chr4_KI270925v1_alt    104231 6 +    555799 CCTGGG
s panTro4.chr4             192802915 6 + 193495092 CCTGGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197914390 6 + 198332218 CCTGGG
i ponAbe2.chr4             C 0 I 210
s rheMac3.chr5             183505601 6 + 184069350 CCTGGA
i rheMac3.chr5             I 84 C 0
s chlSab2.chr7             135253582 6 + 135778131 CCTGGA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e papAnu2.chr5             178312534 42 + 178775436 T
e macFas5.chr5             188889056 63 + 189454096 T
e nomLeu3.chr7b            113672405 27 + 115148730 T

a score=2054.000000
s hg38.chr4_KI270925v1_alt    104237 3 +    555799 GGT
s panTro4.chr4             192802921 3 + 193495092 GGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197914606 3 + 198332218 GGT
i ponAbe2.chr4             I 210 C 0
s rheMac3.chr5             183505607 3 + 184069350 GGT
i rheMac3.chr5             C 0 C 0
s chlSab2.chr7             135253588 3 + 135778131 GTT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e papAnu2.chr5             178312534 42 + 178775436 T
e macFas5.chr5             188889056 63 + 189454096 T
e nomLeu3.chr7b            113672405 27 + 115148730 T

a score=21362.000000
s hg38.chr4_KI270925v1_alt    104240 21 +    555799 GGAGCTAAGCATCCTGGACGT
s panTro4.chr4             192802924 21 + 193495092 GAAGCTAAGCATCCTGGAGGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197914609 21 + 198332218 GAAGCTAAGCAGCCTGGAGGT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183505610 21 + 184069350 GAAGCTAAGCAGCCTGGAGAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188888993 21 + 189454096 GAAGGTAACCAGCCTGCAGGT
i macFas5.chr5             T 63 C 0
s chlSab2.chr7             135253591 21 + 135778131 GAAGATAACCAGCCTGGAGGT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e papAnu2.chr5             178312534 42 + 178775436 T
e nomLeu3.chr7b            113672405 27 + 115148730 T

a score=40292.000000
s hg38.chr4_KI270925v1_alt    104261 27 +    555799 GGAGCTAAGCAGCCTGGGGGTGGAGCT
s panTro4.chr4             192802945 27 + 193495092 GAAGCTAAGCAGCCTGGGGGTGAAGCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197914630 27 + 198332218 GAAGCTAAGCAACCTGGGGGTGAAACT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183505631 27 + 184069350 GAAGCTAACCAGCCTGGAGGTGAAGAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188889014 27 + 189454096 GAAGGTAACCAGCCTGGAGTTGAAGAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312492 27 + 178775436 GAAGGTAACCAGCCTGGAGTTGAAGAT
i papAnu2.chr5             T 42 C 0
s chlSab2.chr7             135253612 27 + 135778131 GAAGCTAACCAGCCTGGGGGTGAAGCT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e nomLeu3.chr7b            113672405 27 + 115148730 T

a score=17695.000000
s hg38.chr4_KI270925v1_alt    104288 8 +    555799 AAGCAGCC
s panTro4.chr4             192802972 8 + 193495092 AAGCAGCC
i panTro4.chr4             C 0 T 168
s ponAbe2.chr4             197914657 8 + 198332218 AAGCAGCC
i ponAbe2.chr4             C 0 T 524
s nomLeu3.chr7b            113672378 8 + 115148730 AAGCAGCC
i nomLeu3.chr7b            T 27 C 0
s rheMac3.chr5             183505658 8 + 184069350 AACCAGCC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188889041 8 + 189454096 AACCAGCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312519 8 + 178775436 AATCAGCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135253639 8 + 135778131 AACCAGCC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I

a score=5803.000000
s hg38.chr4_KI270925v1_alt    104296 3 +    555799 TGG
s panTro4.chr4             192802812 3 + 193495092 TGG
i panTro4.chr4             T 168 C 0
s ponAbe2.chr4             197914141 2 + 198332218 -TG
i ponAbe2.chr4             T 524 C 0
s nomLeu3.chr7b            113672386 3 + 115148730 TGG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183505666 3 + 184069350 TGG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188889049 3 + 189454096 TGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312527 3 + 178775436 TGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135253647 3 + 135778131 TGG
i chlSab2.chr7             C 0 T 40
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I

a score=6612.000000
s hg38.chr4_KI270925v1_alt    104299 4 +    555799 GGGT
s panTro4.chr4             192802815 4 + 193495092 GGGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197914143 4 + 198332218 GGGT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113672389 4 + 115148730 GGGT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183505669 4 + 184069350 AGGT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188889052 4 + 189454096 AGGT
i macFas5.chr5             C 0 T 126
s papAnu2.chr5             178312530 4 + 178775436 AGGT
i papAnu2.chr5             C 0 T 42
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135253650 40 + 135778131 T

a score=8690.000000
s hg38.chr4_KI270925v1_alt    104303 8 +    555799 GGACCTAA
s panTro4.chr4             192802819 8 + 193495092 GAAGCTAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197914147 8 + 198332218 GAAGCTAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113672393 8 + 115148730 GAAGCTAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183505673 8 + 184069350 GAACCTAA
i rheMac3.chr5             C 0 T 262
s macFas5.chr5             188888930 8 + 189454096 GAACCTAA
i macFas5.chr5             T 126 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135253650 40 + 135778131 T
e papAnu2.chr5             178312534 42 + 178775436 T

a score=3010.000000
s hg38.chr4_KI270925v1_alt    104311 4 +    555799 GCAG
s panTro4.chr4             192802827 4 + 193495092 GCAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197914155 4 + 198332218 GCAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113672401 4 + 115148730 GCAG
i nomLeu3.chr7b            C 0 T 27
s macFas5.chr5             188888938 4 + 189454096 CCAG
i macFas5.chr5             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135253650 40 + 135778131 T
e papAnu2.chr5             178312534 42 + 178775436 T
e rheMac3.chr5             183505681 262 + 184069350 T

a score=2940.000000
s hg38.chr4_KI270925v1_alt    104315 7 +    555799 CCTGGAG
s panTro4.chr4             192802831 7 + 193495092 CCTGGGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197914159 7 + 198332218 CCTGAAG
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             188888942 7 + 189454096 TCTGGAG
i macFas5.chr5             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135253650 40 + 135778131 T
e papAnu2.chr5             178312534 42 + 178775436 T
e rheMac3.chr5             183505681 262 + 184069350 T
e nomLeu3.chr7b            113672405 27 + 115148730 T

a score=4386.000000
s hg38.chr4_KI270925v1_alt    104322 6 +    555799 GTGGAG
s panTro4.chr4             192802838 6 + 193495092 GTGAAG
i panTro4.chr4             C 0 T 189
s ponAbe2.chr4             197914166 6 + 198332218 GTGAAG
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             188888949 6 + 189454096 TTGAAG
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135253610 6 + 135778131 GTGAAG
i chlSab2.chr7             T 40 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e papAnu2.chr5             178312534 42 + 178775436 T
e rheMac3.chr5             183505681 262 + 184069350 T
e nomLeu3.chr7b            113672405 27 + 115148730 T

a score=12035.000000
s hg38.chr4_KI270925v1_alt    104328 17 +    555799 CTAAGCATCCTGGGGGT
s panTro4.chr4             192802655 17 + 193495092 CTAAGCATCCTGGGGGT
i panTro4.chr4             T 189 C 0
s ponAbe2.chr4             197914172 17 + 198332218 TTAAGCAGCCTGGGGGT
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             188888955 17 + 189454096 ATAACCAGCCTGGAGGT
i macFas5.chr5             C 0 T 315
s chlSab2.chr7             135253616 17 + 135778131 CTAACCAGCCTGGGGGT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e papAnu2.chr5             178312534 42 + 178775436 T
e rheMac3.chr5             183505681 262 + 184069350 T
e nomLeu3.chr7b            113672405 27 + 115148730 T

a score=41409.000000
s hg38.chr4_KI270925v1_alt    104345 42 +    555799 GGAGCTAAGCATCCTGGAGGTGAAGCTAAGCAGCCTGGGGGT
s panTro4.chr4             192802672 42 + 193495092 GAAGCTAAGCATCCTGGAGGTGAAGCTAAGTATCCTGGGGGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197914189 42 + 198332218 GAAGCTAAGTATCCTGGGGGTGAAGCTAAGCAGCCTGGAGGT
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             188888657 42 + 189454096 GAGGCTAACCAGCCTGGAGGTGAAGATAAGCAGCCTGCATGT
i macFas5.chr5             T 315 C 0
s papAnu2.chr5             178312492 42 + 178775436 GAAGGTAACCAGCCTGGAGTTGAAGATAATCAGCCTGGAGGT
i papAnu2.chr5             T 42 T 357
s chlSab2.chr7             135253633 42 + 135778131 GAAGCTAACCAGCCTGGAGTTCAAGATAACCAGCCTGGAGGT
i chlSab2.chr7             C 0 T 291
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e rheMac3.chr5             183505681 262 + 184069350 T
e nomLeu3.chr7b            113672405 27 + 115148730 T

a score=94955.000000
s hg38.chr4_KI270925v1_alt    104387 129 +    555799 GGAGCTAAGCATCCTGGAGGTGGAGCTAAGCATCCTGGGGGTGAAGCTAAGCAACCTGGAGATGGAGCTAAGTATCCTGGGGGTGGAGCTAAGCAGCCTGGAGGTGGAGCTAAGCATCCTGGGGGTGGA
s panTro4.chr4             192802714 129 + 193495092 GAAGCTAAGTATCCTGGGGGTGAAGCTAAGCAGCCTGGGGGTGAAGCTAAGCATCCTGGAGGTGAAGCTAAGCATCCTGGGGGTGAAGCTAAGCATCCTGGGGGTGAAGCTAAGCAGCCTGGGGGTGAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197914231 129 + 198332218 GATGCTAAGCACCTTGGAGGTGAAGCTAAGCATCCTGGAGGTGAAGCTAAGCAGCCGGGAGGTGAAGCTAAGCATCCTGGGGGTGAAGCTAAGCAGCCGGGAGGTGAAGCTAAGCATCCTGGAGGTGAA
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             188888699 129 + 189454096 GAAGCTAACTAGCCTGGAGGTGAAGCTAACCAGCCTGGAGGTGAAGCTAAGCAGCCTGGAGATGAAGCTAACCAGCCTGGAGGTGAGGCTAACCAGCCTGGAGGTGAAGCTAACCAGCCTGGAGGTGAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312177 129 + 178775436 GAAGCTAAGCAGCCTGGAGGTGAAGTTAAGCAGCCTGGAGATGAAGCTAACCAGCCTGGAGGTGAGGCTAACCAGTCTGGAGGTGAAGATAACCAGCCTGGAGGTGAAGCTAAGCAGCCTGGAGATGAA
i papAnu2.chr5             T 357 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560  14 -  59632846 I
e calJac3.chr3             190397870  29 - 190850796 I
e chlSab2.chr7             135253675 291 + 135778131 T
e rheMac3.chr5             183505681 262 + 184069350 T
e nomLeu3.chr7b            113672405  27 + 115148730 T

a score=15333.000000
s hg38.chr4_KI270925v1_alt    104516 16 +    555799 GCTAAGCATCCTGGGG
s panTro4.chr4             192802843 16 + 193495092 GCTAAGCATCCTGGGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197914360 16 + 198332218 GCTAAGCAGCCTGGGG
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             188888828 16 + 189454096 GATAAGCAGCCTGCAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312306 16 + 178775436 GCTAACCAGCCTGGAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135253384 16 + 135778131 GCTAACCAGCCTGGAG
i chlSab2.chr7             T 291 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e rheMac3.chr5             183505681 262 + 184069350 T
e nomLeu3.chr7b            113672405 27 + 115148730 T

a score=99708.000000
s hg38.chr4_KI270925v1_alt    104532 62 +    555799 GTGAAGCTAAGCATCCTGGAGGTGGAGCTAAGCAGCCTGGAGGTGGAGCTAAGCATCCTTGA
s panTro4.chr4             192802859 62 + 193495092 GTGAAGCTAAGCATCGTGGGGGTGAAGCTAAGCAGCCTGGGGGTGAAGCTAAGCATCCTGGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197914376 62 + 198332218 GTGAAGCTAAGCAGCCTGGGGGTGAAACTAAGCAACCTGGGGGTGAAGCTAAGCAGCCTGGA
i ponAbe2.chr4             C 0 T 42
s rheMac3.chr5             183505419 62 + 184069350 GTGAAGCTAACCAGCCTGGAGGTGAAGCTAAGCAGCCTGGAGATGAAGCTAACCAGCCTGGA
i rheMac3.chr5             T 262 C 0
s macFas5.chr5             188888844 62 + 189454096 GTGAAGCTAACCAGCCTGGAGGTGAAGCTAAGCAGCCTGGAGATGAAGCTAACCAGCCTGGA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312322 62 + 178775436 GTGAGGCTAACCAGCCTGCAGGTGAAGCTAACCAGCCTGGAGGTGAAGTTAAGCAGCCTGGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135253400 62 + 135778131 GTGAAGCTAACCAGCCTGGAGGTGAAGCTAACCAGCCTGGAGGTGAAGATAACCAGCCTGGA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e nomLeu3.chr7b            113672405 27 + 115148730 T

a score=20466.000000
s hg38.chr4_KI270925v1_alt    104594 15 +    555799 GGTGGAGCTAAGCAT
s panTro4.chr4             192802921 15 + 193495092 GGTGAAGCTAAGCAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197914396 15 + 198332218 GGTGAAACTAAGCAA
i ponAbe2.chr4             T 42 C 0
s rheMac3.chr5             183505481 15 + 184069350 GGTGAGGCTAACCAG
i rheMac3.chr5             C 0 I 21
s macFas5.chr5             188888906 15 + 189454096 GGTGAAGATAACCAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312384 15 + 178775436 GATGAAGCTAACCAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135253462 15 + 135778131 GGTGAAGCTAACCAG
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e nomLeu3.chr7b            113672405 27 + 115148730 T

a score=25789.000000
s hg38.chr4_KI270925v1_alt    104609 15 +    555799 CCTGGGGGTGAAGCT
s panTro4.chr4             192802936 15 + 193495092 CCTGGAGGTGAAGCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197914411 15 + 198332218 CCTGGGGGTGAAGCT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183505517 15 + 184069350 CCTGGAGGTGAAGAT
i rheMac3.chr5             I 21 C 0
s macFas5.chr5             188888921 15 + 189454096 CCTGGAGGTGAACCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312399 15 + 178775436 CCTGGAGGTGAGGCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135253477 15 + 135778131 CCTGGAGGTGAAGCT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e nomLeu3.chr7b            113672405 27 + 115148730 T

a score=28697.000000
s hg38.chr4_KI270925v1_alt    104624 15 +    555799 AAGCAGCCTGGGGGT
s panTro4.chr4             192802951 15 + 193495092 AAGCAGCCTGGGGGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197914426 15 + 198332218 AAGCAGCCTGGAGGT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113672378 15 + 115148730 AAGCAGCCTGGGGGT
i nomLeu3.chr7b            T 27 C 0
s rheMac3.chr5             183505532 15 + 184069350 AAGCAGCCTGCATGT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188888936 15 + 189454096 AACCAGTCTGGAGTT
i macFas5.chr5             C 0 T 294
s papAnu2.chr5             178312414 15 + 178775436 AACCAGCCTGCAGGT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135253492 15 + 135778131 AACCAGCCTGGAGGT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I

a score=48935.000000
s hg38.chr4_KI270925v1_alt    104639 21 +    555799 GGAGCTAAGCAGCCTGGAGGT
s panTro4.chr4             192802966 21 + 193495092 GAAGCTAAGCAGCCGGGAGGT
i panTro4.chr4             C 0 T 294
s ponAbe2.chr4             197914441 21 + 198332218 GAAGCTAAGCAGCCTGGGGGT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113672393 21 + 115148730 GAAGCTAAGCAGCCTGGAGGT
i nomLeu3.chr7b            C 0 T 58
s rheMac3.chr5             183505547 21 + 184069350 GAAGCTAACCAGCCTGGAGGT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188888657 21 + 189454096 GAGGCTAACCAGCCTGGAGGT
i macFas5.chr5             T 294 C 0
s papAnu2.chr5             178312429 21 + 178775436 GAAGCTAACCAGCCTGGAGGT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135253507 21 + 135778131 GAAGCTAACCAGCCTGGAGGT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I

a score=6650.000000
s hg38.chr4_KI270925v1_alt    104660 5 +    555799 GGAGG
s panTro4.chr4             192802693 5 + 193495092 GAAGC
i panTro4.chr4             T 294 C 0
s ponAbe2.chr4             197914462 5 + 198332218 GAAGC
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183505568 5 + 184069350 GAAGA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188888678 5 + 189454096 GAAGA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312450 5 + 178775436 GAAGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135253528 5 + 135778131 GAAGA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e nomLeu3.chr7b            113672414 58 + 115148730 T

a score=52819.000000
s hg38.chr4_KI270925v1_alt    104665 28 +    555799 TAAGCAGCCTGGGGGTGGAGCTAAGCAG
s panTro4.chr4             192802698 28 + 193495092 TAAGTATCCTGGGGGTGAAGCTAAGTAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197914467 28 + 198332218 TAAGCAGCCTGGAGGTGAAGCTAAGCAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113672356 28 + 115148730 TAAGCAGCCTGGGGGTGAAGCTAAGCAG
i nomLeu3.chr7b            T 58 T 26
s rheMac3.chr5             183505573 28 + 184069350 TAAGCAGCCTGCATGTGAAGCTAACCAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188888683 28 + 189454096 TAAGCAGCCTGCATGTGAAGCTAACTAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312455 28 + 178775436 TAACCAGCCTGGAGGTGAAGATAACCAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135253533 28 + 135778131 TAACCAGCCTGGAGGTGAAGATAACCAG
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I

a score=81604.000000
s hg38.chr4_KI270925v1_alt    104693 51 +    555799 CCTGGGGGTGGAGCTAAGCAGCCTGGAGGTGGAGCTAAGCAGCCTGGAGGT
s panTro4.chr4             192802726 51 + 193495092 CCTGGGGGTGAAGCTAAGCAGCCTGGGGGTGAAGCTAAGCATCCTGGAGGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197914495 51 + 198332218 CCTGGGGGTGAAGCTAAGCAGCCTGGAGGTGAAGCTAAGCAGCCTGAAGGT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183505601 51 + 184069350 CCTGGAGGTGAAGCTAAGCAGCCTGGAGATGAAGCTAACCAGCCTGGAGGT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188888711 51 + 189454096 CCTGGAGGTGAAGCTAACCAGCCTGGAGGTGAAGCTAAGCAGCCTGGAGAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312483 51 + 178775436 CCTGCAAGTGAAGGTAACCAGCCTGGAGTTGAAGATAATCAGCCTGGAGGT
i papAnu2.chr5             C 0 T 252
s chlSab2.chr7             135253561 51 + 135778131 CCTGCAGGTGAAGTTAAGCAGCCTGGAGTTGAAGATAACCAGCCTGGAGGT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e nomLeu3.chr7b            113672384 26 + 115148730 T

a score=46467.000000
s hg38.chr4_KI270925v1_alt    104744 29 +    555799 GGAGCTAAGCATCCTGGGGGTGAAGCTAA
s panTro4.chr4             192802777 29 + 193495092 GAAGCTAAGCATCCTGGGGGTGAAGCTAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197914546 29 + 198332218 GAAGCTAAGCAGCCTGGGGGTGAAACTAA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183505652 29 + 184069350 GAAGATAACCAGCCTGGAGGTGAACCTAA
i rheMac3.chr5             C 0 T 91
s macFas5.chr5             188888762 29 + 189454096 GAAGCTAACCAGCCTGGAGGTGAGGCTAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312282 29 + 178775436 GAAGCTAAGCAGCCTGGAGATGAAGCTAA
i papAnu2.chr5             T 252 C 0
s chlSab2.chr7             135253612 29 + 135778131 GAAGCTAACCAGCCTGGGGGTGAAGCTAA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e nomLeu3.chr7b            113672384 26 + 115148730 T

a score=9073.000000
s hg38.chr4_KI270925v1_alt    104773 9 +    555799 GCATCCTGG
s panTro4.chr4             192802806 9 + 193495092 GCATCCTGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197914575 9 + 198332218 GCAACCTGG
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             188888791 9 + 189454096 CCAGCCTGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312311 9 + 178775436 CCAGCCTGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135253641 9 + 135778131 CCAGCCTGG
i chlSab2.chr7             C 0 T 105
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e rheMac3.chr5             183505681 91 + 184069350 T
e nomLeu3.chr7b            113672384 26 + 115148730 T

a score=294.000000
s hg38.chr4_KI270925v1_alt    104782 1 +    555799 G
s panTro4.chr4             192802815 1 + 193495092 G
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197914584 1 + 198332218 G
i ponAbe2.chr4             C 0 T 427
s macFas5.chr5             188888800 1 + 189454096 A
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312320 1 + 178775436 A
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135253545 1 + 135778131 A
i chlSab2.chr7             T 105 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e rheMac3.chr5             183505681 91 + 184069350 T
e nomLeu3.chr7b            113672384 26 + 115148730 T

a score=24803.000000
s hg38.chr4_KI270925v1_alt    104783 35 +    555799 GGTGGAGCTAAGCATCCTGGGGGTGGAGCTAAGCA
s panTro4.chr4             192802816 35 + 193495092 GGTGAAGCTAAGCAGCCTGGGGGTGAAGCTAAGCA
i panTro4.chr4             C 0 C 0
s macFas5.chr5             188888801 35 + 189454096 GGTGAAGCTAACCAGCCTGGAGGTGAAGATAAGCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312321 35 + 178775436 GGTGAGGCTAACCAGCCTGCAGGTGAAGCTAACCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135253546 35 + 135778131 GGTGAAGATAACCAGCCTGCAGGTGAAGTTAAGCA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e rheMac3.chr5             183505681 91 + 184069350 T
e nomLeu3.chr7b            113672384 26 + 115148730 T
e ponAbe2.chr4             197914585 427 + 198332218 T

a score=75632.000000
s hg38.chr4_KI270925v1_alt    104818 71 +    555799 TCCTGGGGGTGAAGGTAAGCATCCTGGAGGTGGAGCTAAGCAGCCTGGGGGTGGAGCTAAGCATCCTGGAG
s panTro4.chr4             192802851 71 + 193495092 TCCTGGGGGTGAAGCTAAGCATCGTGGGGGTGAAGCTAAGCAGCCTGGGGGTGAAGCTAAGCATCCTGGAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197914158 71 + 198332218 GCCTGAAGGTGAAGTTAAGCAGCCTGGGGGTGAAGCTAAGTATCCTGGGGGTGAAGCTAAGCAGCCTGGAG
i ponAbe2.chr4             T 427 C 0
s macFas5.chr5             188888836 71 + 189454096 GCCTGCATGTGAAGCTAACCAGCCTGGAGGTGAAGCTAAGCAGCCTGGAGATGAAGCTAACCAGCCTGGAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312356 71 + 178775436 GCCTGGAGGTGAAGTTAAGCAGCCTGGAGATGAAGCTAACCAGCCTGGAGGTGAGGCTAACCAGCCTGCAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135253581 71 + 135778131 GCCTGGAGTTGAAGATAACCAGCCTGGAGGTGAAGCTAACCAGCCTGGGGGTGAAGCTAACCAGCCTGGAG
i chlSab2.chr7             C 0 T 63
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e rheMac3.chr5             183505681 91 + 184069350 T
e nomLeu3.chr7b            113672384 26 + 115148730 T

a score=3295.000000
s hg38.chr4_KI270925v1_alt    104889 3 +    555799 GTG
s panTro4.chr4             192802922 3 + 193495092 GTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197914229 3 + 198332218 GTG
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             188888907 3 + 189454096 GTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312427 3 + 178775436 GTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135253589 3 + 135778131 TTG
i chlSab2.chr7             T 63 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e rheMac3.chr5             183505681 91 + 184069350 T
e nomLeu3.chr7b            113672384 26 + 115148730 T

a score=87676.000000
s hg38.chr4_KI270925v1_alt    104892 60 +    555799 GAGCTAAGCATCCTGGGGGTGGAGCTAAGCATCCTGGGGGTGGAGCTAAGCAGCCTGGAG
s panTro4.chr4             192802925 60 + 193495092 AAGCTAAGCATCCTGGAGGTGAAGCTAAGCAGCCTGGGGGTGAAGCTAAGCAGCCGGGAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197914232 60 + 198332218 ATGCTAAGCACCTTGGAGGTGAAGCTAAGCATCCTGGAGGTGAAGCTAAGCAGCCGGGAG
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183505590 60 + 184069350 AAGCTAACCAGCCTGGAGGTGAAGCTAAGCAGCCTGGAGATGAAGCTAACCAGCCTGGAG
i rheMac3.chr5             T 91 C 0
s macFas5.chr5             188888910 60 + 189454096 AAGATAACCAGCCTGGAGGTGAACCTAACCAGTCTGGAGTTGAAGATAACCAGCCTGGAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312430 60 + 178775436 AAGCTAACCAGCCTGGAGGTGAAGATAACCAGCCTGGAGGTGAAGATAACCAGCCTGCAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135253592 60 + 135778131 AAGATAACCAGCCTGGAGGTGAAGCTAACCAGCCTGGGGGTGAAGCTAACCAGCCTGGAG
i chlSab2.chr7             C 0 T 124
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e nomLeu3.chr7b            113672384 26 + 115148730 T

a score=2865.000000
s hg38.chr4_KI270925v1_alt    104952 2 +    555799 GT
s panTro4.chr4             192802985 2 + 193495092 GT
i panTro4.chr4             C 0 T 147
s ponAbe2.chr4             197914292 2 + 198332218 GT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183505650 2 + 184069350 GT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188888970 2 + 189454096 GT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312490 2 + 178775436 GT
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135253652 124 + 135778131 T
e nomLeu3.chr7b            113672384 26 + 115148730 T

a score=31850.000000
s hg38.chr4_KI270925v1_alt    104954 22 +    555799 GGAGGTAAGCAGCCTGGGGGTG
s panTro4.chr4             192802840 22 + 193495092 GAAGCTAAGCATCCTGGGGGTG
i panTro4.chr4             T 147 C 0
s ponAbe2.chr4             197914294 22 + 198332218 GAAGCTAAGCATCCTGGGGGTG
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183505652 22 + 184069350 GAAGATAACCAGCCTGGAGGTG
i rheMac3.chr5             C 0 T 255
s macFas5.chr5             188888972 22 + 189454096 GAAGATAACCAGCCTGCAGGTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312492 22 + 178775436 GAAGGTAACCAGCCTGGAGTTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135253528 22 + 135778131 GAAGATAACCAGCCTGGAGGTG
i chlSab2.chr7             T 124 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e nomLeu3.chr7b            113672384 26 + 115148730 T

a score=17645.000000
s hg38.chr4_KI270925v1_alt    104976 20 +    555799 GAGGTAAGCAGCCTGGGGGT
s panTro4.chr4             192802862 20 + 193495092 AAGCTAAGCATCGTGGGGGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197914316 20 + 198332218 AAGCTAAGCAGCCGGGAGGT
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             188888994 20 + 189454096 AAGGTAACCAGCCTGCAGGT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312514 20 + 178775436 AAGATAATCAGCCTGGAGGT
i papAnu2.chr5             C 0 T 42
s chlSab2.chr7             135253550 20 + 135778131 AAGATAACCAGCCTGCAGGT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e rheMac3.chr5             183505674 255 + 184069350 T
e nomLeu3.chr7b            113672384 26 + 115148730 T

a score=26751.000000
s hg38.chr4_KI270925v1_alt    104996 25 +    555799 GGAGGTAAGCAGCCTGGGGGTGGAG
s panTro4.chr4             192802882 25 + 193495092 GAAGCTAAGCAGCCTGGGGGTGAAG
i panTro4.chr4             C 0 T 252
s ponAbe2.chr4             197914336 25 + 198332218 GAAGCTAAGCATCCTGGAGGTGAAG
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             188889014 25 + 189454096 GAAGGTAACCAGCCTGGAGTTGAAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312492 25 + 178775436 GAAGGTAACCAGCCTGGAGTTGAAG
i papAnu2.chr5             T 42 C 0
s chlSab2.chr7             135253570 25 + 135778131 GAAGTTAAGCAGCCTGGAGTTGAAG
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e rheMac3.chr5             183505674 255 + 184069350 T
e nomLeu3.chr7b            113672384 26 + 115148730 T

a score=12125.000000
s hg38.chr4_KI270925v1_alt    105021 17 +    555799 CTAAGCATCCTGGAGGT
s ponAbe2.chr4             197914361 17 + 198332218 CTAAGCAGCCTGGGGGT
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             188889039 17 + 189454096 ATAACCAGCCTGGAGGT
i macFas5.chr5             C 0 T 294
s papAnu2.chr5             178312517 17 + 178775436 ATAATCAGCCTGGAGGT
i papAnu2.chr5             C 0 T 294
s chlSab2.chr7             135253595 17 + 135778131 ATAACCAGCCTGGAGGT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e rheMac3.chr5             183505674 255 + 184069350 T
e nomLeu3.chr7b            113672384 26 + 115148730 T
e panTro4.chr4             192802907 252 + 193495092 T

a score=602.000000
s hg38.chr4_KI270925v1_alt    105038 3 +    555799 GGA
s ponAbe2.chr4             197914378 3 + 198332218 GAA
i ponAbe2.chr4             C 0 C 0
s chlSab2.chr7             135253612 3 + 135778131 GAA
i chlSab2.chr7             C 0 T 231
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e papAnu2.chr5             178312534 294 + 178775436 T
e macFas5.chr5             188889056 294 + 189454096 T
e rheMac3.chr5             183505674 255 + 184069350 T
e nomLeu3.chr7b            113672384 26 + 115148730 T
e panTro4.chr4             192802907 252 + 193495092 T

a score=100.000000
s hg38.chr4_KI270925v1_alt    105041 1 +    555799 G
s ponAbe2.chr4             197914381 1 + 198332218 G
i ponAbe2.chr4             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135253615 231 + 135778131 T
e papAnu2.chr5             178312534 294 + 178775436 T
e macFas5.chr5             188889056 294 + 189454096 T
e rheMac3.chr5             183505674 255 + 184069350 T
e nomLeu3.chr7b            113672384 26 + 115148730 T
e panTro4.chr4             192802907 252 + 193495092 T

a score=9353.000000
s hg38.chr4_KI270925v1_alt    105042 38 +    555799 CTAAGCATCCTGGGGGTGGAGCTAAGCATCCTGGAGGT
s panTro4.chr4             192802655 38 + 193495092 CTAAGCATCCTGGGGGTGAAGCTAAGCATCCTGGAGGT
i panTro4.chr4             T 252 C 0
s ponAbe2.chr4             197914382 38 + 198332218 CTAAGCAGCCTGGGGGTGAAACTAAGCAACCTGGGGGT
i ponAbe2.chr4             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135253615 231 + 135778131 T
e papAnu2.chr5             178312534 294 + 178775436 T
e macFas5.chr5             188889056 294 + 189454096 T
e rheMac3.chr5             183505674 255 + 184069350 T
e nomLeu3.chr7b            113672384 26 + 115148730 T

a score=12890.000000
s hg38.chr4_KI270925v1_alt    105080 19 +    555799 GGAGCTAAGCATCCTGGGG
s panTro4.chr4             192802693 19 + 193495092 GAAGCTAAGTATCCTGGGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197914420 19 + 198332218 GAAGCTAAGCAGCCTGGAG
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             188888762 19 + 189454096 GAAGCTAACCAGCCTGGAG
i macFas5.chr5             T 294 C 0
s papAnu2.chr5             178312240 19 + 178775436 GAGGCTAACCAGTCTGGAG
i papAnu2.chr5             T 294 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135253615 231 + 135778131 T
e rheMac3.chr5             183505674 255 + 184069350 T
e nomLeu3.chr7b            113672384 26 + 115148730 T

a score=14015.000000
s hg38.chr4_KI270925v1_alt    105099 14 +    555799 GTGGAGCTAAGCAG
s panTro4.chr4             192802712 14 + 193495092 GTGAAGCTAAGTAT
i panTro4.chr4             C 0 T 63
s ponAbe2.chr4             197914439 14 + 198332218 GTGAAGCTAAGCAG
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183505419 14 + 184069350 GTGAAGCTAACCAG
i rheMac3.chr5             T 255 C 0
s macFas5.chr5             188888781 14 + 189454096 GTGAGGCTAACCAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312259 14 + 178775436 GTGAAGATAACCAG
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135253615 231 + 135778131 T
e nomLeu3.chr7b            113672384 26 + 115148730 T

a score=41520.000000
s hg38.chr4_KI270925v1_alt    105113 33 +    555799 CCTGGAGGTGGAGCTAAGCATCCTGGAGGTGGA
s panTro4.chr4             192802663 33 + 193495092 CCTGGGGGTGAAGCTAAGCATCCTGGAGGTGAA
i panTro4.chr4             T 63 C 0
s ponAbe2.chr4             197914453 33 + 198332218 CCTGGGGGTGAAGCTAAGCAGCCTGGAGGTGAA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183505433 33 + 184069350 CCTGGAGGTGAAGCTAAGCAGCCTGGAGATGAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188888795 33 + 189454096 CCTGGAGGTGAAGCTAACCAGCCTGGAGGTGAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312273 33 + 178775436 CCTGGAGGTGAAGCTAAGCAGCCTGGAGATGAA
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135253615 231 + 135778131 T
e nomLeu3.chr7b            113672384 26 + 115148730 T

a score=25487.000000
s hg38.chr4_KI270925v1_alt    105146 18 +    555799 GCTAAGCATCCTGGGGGT
s panTro4.chr4             192802696 18 + 193495092 GCTAAGTATCCTGGGGGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197914486 18 + 198332218 GCTAAGCAGCCTGGGGGT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183505466 18 + 184069350 GCTAACCAGCCTGGAGGT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188888828 18 + 189454096 GATAAGCAGCCTGCATGT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312306 18 + 178775436 GCTAACCAGCCTGGAGGT
i papAnu2.chr5             C 0 I 176
s chlSab2.chr7             135253384 18 + 135778131 GCTAACCAGCCTGGAGGT
i chlSab2.chr7             T 231 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e nomLeu3.chr7b            113672384 26 + 115148730 T

a score=89177.000000
s hg38.chr4_KI270925v1_alt    105164 81 +    555799 GAAGCTAAGCATCCTGGAGGTGGAGCTAAGCATCCTGGGGGTGGAGCTAAGCATCCTGGAGGTGGAGCTAAGCATCCTGGG
s panTro4.chr4             192802714 81 + 193495092 GAAGCTAAGTATCCTGGGGGTGAAGCTAAGCAGCCTGGGGGTGAAGCTAAGCATCCTGGAGGTGAAGCTAAGCATCCTGGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197914504 81 + 198332218 GAAGCTAAGCAGCCTGGAGGTGAAGCTAAGCAGCCTGAAGGTGAAGCTAAGCAGCCTGGGGGTGAAACTAAGCAACCTGGG
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183505484 81 + 184069350 GAGGCTAACCAGCCTGGAGGTGAAGCTAACCAGCCTGGAGGTGAAGATAAGCAGCCTGCATGTGAAGCTAACCAGCCTGGA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188888846 81 + 189454096 GAAGCTAACCAGCCTGGAGGTGAAGCTAAGCAGCCTGGAGATGAAGCTAACCAGCCTGGAGGTGAAGATAACCAGCCTGGA
i macFas5.chr5             C 0 T 63
s chlSab2.chr7             135253402 81 + 135778131 GAAGCTAACCAGCCTGGAGGTGAAGCTAACCAGCCTGGAGGTGAAGATAACCAGCCTGGAGGTGAAGCTAACCAGCCTGGA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e papAnu2.chr5             178312324 176 + 178775436 I
e nomLeu3.chr7b            113672384 26 + 115148730 T

a score=86347.000000
s hg38.chr4_KI270925v1_alt    105245 77 +    555799 GGTGAAGCTAAGCATCCTGGAGGTGGAGCTAAGCAGCCTGGGGGTGGAGCTAAGCATCCTGGAGGTGGAGCTAAGCA
s panTro4.chr4             192802795 77 + 193495092 GGTGAAGCTAAGCATCCTGGGGGTGAAGCTAAGCAGCCTGGGGGTGAAGCTAAGCATCCTGGGGGTGAAGCTAAGCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197914585 77 + 198332218 GGTGAAGCTAAGCAGCCTGGGGGTGAAGCTAAGCAGCCTGGAGGTGAAGCTAAGCAACCTGGGGGTGAAACTAAGCA
i ponAbe2.chr4             C 0 T 77
s rheMac3.chr5             183505565 77 + 184069350 GGTGAAGATAAGCAGCCTGCATGTGAAGCTAACCAGCCTGGAGGTGAAGCTAAGCAGCCTGGAGATGAAGCTAACCA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188888864 77 + 189454096 GGTGAAGCTAAGCAGCCTGGAGATGAAGCTAACCAGCCTGGAGGTGAAGATAACCAGCCTGGAGGTGAACCTAACCA
i macFas5.chr5             T 63 C 0
s chlSab2.chr7             135253483 77 + 135778131 GGTGAAGCTAACCAGCCTGGAGGTGAAGCTAACCAGCCTGGAGGTGAAGATAACCAGCCTGGAGGTGAAGATAACCA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e papAnu2.chr5             178312324 176 + 178775436 I
e nomLeu3.chr7b            113672384 26 + 115148730 T

a score=5956.000000
s hg38.chr4_KI270925v1_alt    105322 12 +    555799 TCCTGGGGGTGG
s panTro4.chr4             192802872 12 + 193495092 TCGTGGGGGTGA
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183505642 12 + 184069350 GCCTGGAGGTGA
i rheMac3.chr5             C 0 I 33
s macFas5.chr5             188888941 12 + 189454096 GTCTGGAGTTGA
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135253560 12 + 135778131 GCCTGCAGGTGA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e papAnu2.chr5             178312324 176 + 178775436 I
e nomLeu3.chr7b            113672384 26 + 115148730 T
e ponAbe2.chr4             197914662 77 + 198332218 T

a score=10068.000000
s hg38.chr4_KI270925v1_alt    105334 16 +    555799 AGCTAAGCATCCTGGA
s panTro4.chr4             192802884 16 + 193495092 AGCTAAGCAGCCTGGG
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183505687 16 + 184069350 AGGTAACCAGCCTGCA
i rheMac3.chr5             I 33 C 0
s macFas5.chr5             188888953 16 + 189454096 AGATAACCAGCCTGGA
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135253572 16 + 135778131 AGTTAAGCAGCCTGGA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e papAnu2.chr5             178312324 176 + 178775436 I
e nomLeu3.chr7b            113672384 26 + 115148730 T
e ponAbe2.chr4             197914662 77 + 198332218 T

a score=31968.000000
s hg38.chr4_KI270925v1_alt    105350 31 +    555799 GGTGAAGCTAAGCAGCCTGGGGGTGGAGCTT
s panTro4.chr4             192802900 31 + 193495092 GGTGAAGCTAAGCATCCTGGAGGTGAAGCTA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197914585 31 + 198332218 GGTGAAGCTAAGCAGCCTGGGGGTGAAGCTA
i ponAbe2.chr4             T 77 C 0
s rheMac3.chr5             183505703 31 + 184069350 GGTGAAGGTAACCAGCCTGCAGGTGAAGGTA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188888969 31 + 189454096 GGTGAAGATAACCAGCCTGCAGGTGAAGGTA
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135253588 31 + 135778131 GTTGAAGATAACCAGCCTGGAGGTGAAGCTA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e papAnu2.chr5             178312324 176 + 178775436 I
e nomLeu3.chr7b            113672384 26 + 115148730 T

a score=32373.000000
s hg38.chr4_KI270925v1_alt    105381 22 +    555799 AGCAGCCTGGGGGTGGAGCTAT
s panTro4.chr4             192802931 22 + 193495092 AGCATCCTGGAGGTGAAGCTAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197914616 22 + 198332218 AGCAGCCTGGAGGTGAAGCTAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113672358 22 + 115148730 AGCAGCCTGGGGGTGAAGCTAA
i nomLeu3.chr7b            T 26 C 0
s rheMac3.chr5             183505734 22 + 184069350 ACCAGCCTGCAGGTGAAGGTAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188889000 22 + 189454096 ACCAGCCTGCAGGTGAAGGTAA
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135253619 22 + 135778131 ACCAGCCTGGGGGTGAAGCTAA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560 14 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e papAnu2.chr5             178312324 176 + 178775436 I

a score=547609.000000
s hg38.chr4_KI270925v1_alt    105403 241 +    555799 GCAGCCTGGGGTTGGAGCTAAGCAGCCGGGAGG----TCCCATCTTTGGTTCAAATAC-------GATGACTGTGGGTTCTCTGCTTGTTCCCTCCATGCTGTGGGGTTGCCATCGCCTCCCTGGGATGGTTTTTAAGTTGCACAGGTCATCTTACTCCATATTGCAATGTCGCTGTTTGCACGGATCCCCTCCCATTGCTGTACACTCTAGTCCTTCCACACTCATTATACTTGGAGGCTAAAGGATACTT
s panTro4.chr4             192802953 241 + 193495092 GCAGCCTGGGGGTGAAGCTAAGCAGCCGGGAGG----TCCCATCTTTGGTTCAAATAC-------GATGACTGTGGGTTCTCTGCTTGTTCCCTCCATGCTGTGGGGTTGCCATCGCCTCCCTGGGATGGTTTTTAAGTGGCACAGGTCATCTTACTCAATATTGCAATGTTGCTGTTTGCACCGATCCCCTCCCATTGCTGTACACTCTAGTCCTTCCACACTCATTATACTTGGAGGCTAAAGGATACTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197914638 241 + 198332218 GCAACCTGGGGGTGAAACTAAGCAGCCGGGAGG----TCCCATCTTTGGTTCAAATAT-------GATGACTGTGGGTTCTGTGCTTGTTCCCTCCATGCTGCGGGGTTGCCATCGCCTCCCTGGGATGGTTTTTAAGTGGCACAGGTCATCTTACTCAATATTGCAATGTCGCTGTTTGCACCAATCCCCTCCCATTGCTGTACACTCTAGTCCTTCTACACTCATTATACTTGGAGGCTAAAGGATACTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113672380 252 + 115148730 GCAGCCTGGGGGTGAAGCTAAGCAGCCTGGAGGTCCATCCCATCTTTGGTTCAAATACGATGACTGATGACTGTGGGCTCTCTGCTTGTTCCCTCCATGCTGTGGGGTTGCCATTGCCTCTCTGGGATGGTTTTTAAGTAGCACAGGTCATCTTACTCAATATTGCAATGTCGCTGTTTGCACCAATCCCCTCCCATTGCTGTACGCTCTAGTCCTTCCGCACTCGTTATACCTGGAGGCTAAAGGATACTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183505756 238 + 184069350 CCAGCCTGGAGTTGAAGATAACCAGCCTGGAGG----TCCCCTCTTTGGTTCAAATAC-------AATGGCTGTGGGTTCTCTGCTTGTTCCCTGCATGCTGTGGGGTTACCATCGCCTCCCTGGGATGGTTTTTAAGTGGCACAGGTCATCTTTCTCAGTATTGCAAT---GTTATTGGCACCGATCCTCTCCCAATGCTGTACACTCTAGTCCTTCCACACTCATTATACTTGGAGGCTAAAGGATACTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188889022 238 + 189454096 CCAGCCTGGAGTTGAAGATAACCAGCCTGGAGG----TCCCCTCTTTGGTTCAAATAC-------AATGGCTGTGGGTTCTCTGCTTGTTCCCTGCATGCTGTGGGGTTACCATCGCCTCCCTGGGATGGTTTTTAAGTGGCACAGGTCATCTTTCTCAGTATTGCAAT---GTTATTGGCACCGATCCTCTCCCAATGCTGTACACTCTAGTCCTTCCACACTCATTATACTTGGAGGCTAAAGGATACTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312500 238 + 178775436 CCAGCCTGGAGTTGAAGATAATCAGCCTGGAGG----TCCCCTCTTTGGTTCAAATAC-------AATGGCTGTAGGTTCTCTGCTTGTTCCCTGCATGCTGTGGGGTTACCATCGCCTCCCTGGGATGGTTTTTAAGTGGCACAGGTCATCTTTCTCAGTATTGCAAT---GTCATTTGCACCGATCCTCTCCCAATGCTGTACACTCTAGTCCTTCCACACTCATTATACTTGGAGGCTAAAGGATACTT
i papAnu2.chr5             I 176 C 0
s chlSab2.chr7             135253641 241 + 135778131 CCAGCCTGGAGTTCAAGATAACCAGCCTGGAGG----TCCCCTCTTTGGTTCAAATAC-------AATGGCTGTGGGTTCTCTGCTTGTTCCCTGAATGCTGTGGGGTTGCCATCGCCTCCCTGGGATGGTTTTTAAGTGGCACAGGTCATCTTTCTCAATATTGCAATGTCGTTATTTGCACCGATCCTCTCCCAATGCTGTACACTCTAGTCCTTCCACACTCGTTGTACTTGGAGGCTAAAGGATACTT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17821560  14 -  59632846 I
e calJac3.chr3             190397870  29 - 190850796 I

a score=2201120.000000
s hg38.chr4_KI270925v1_alt    105644 853 +    555799  
s panTro4.chr4             192803194 853 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197914879 849 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113672632 848 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183505994 838 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188889260 838 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178312738 838 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135253882 841 + 135778131  
i chlSab2.chr7             C 0 I 4
s canFam3.chr16             17821574 849 -  59632846  
i canFam3.chr16            I 14 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e calJac3.chr3             190397870  29 - 190850796 I

a score=4557.000000
s hg38.chr4_KI270925v1_alt    106497 18 +    555799 AGTGCCTCttctctagtg
s panTro4.chr4             192804047 18 + 193495092 AGTGCCTCttctctagtg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197915728  7 + 198332218 -----------tctagtc
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113673480  7 + 115148730 -----------tctagtc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183506832  7 + 184069350 -----------tctcgtc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188890098  7 + 189454096 -----------TCTCGTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178313576  7 + 178775436 -----------TCTCGTC
i papAnu2.chr5             C 0 C 0
s canFam3.chr16             17822423 14 -  59632846 ----AGTCATTTCTCAGC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135254723  4 + 135778131 I

a score=837331.000000
s hg38.chr4_KI270925v1_alt    106515 310 +    555799 cctcttgaagct-gggatggctttttggtagttctggtcaatagtagaccaactgaagactgctgggccgttaaagggaaacttctgcattcctgacagaagggacag---ctggggccactccttctcccttcttcgtgcctttactggagacatgagact-gggcttggagcagtgccatcattttagggtgcaaaaaatcaagccaacacacttaagatgacgcagtagaaatcgagaaggagcctgggttttggtggcattgctgag----ccttagccctggacggtctgaacagcttgccctgagagaccatt
s panTro4.chr4             192804065 310 + 193495092 cctcttgaagct-gggatggctttttggtagttctggtcaatagtagaccaactgaagactgctgggcctttcaagggaaacttctgcattcctgacagaagggacag---ctggggccactccttctcccttcttcgtgcctttactggagacatgagact-gggcttggagcagtgccatcattttagggtgcaaaaaatcaagccaacacacttaagatgacgcagtagaaatcgagaaggaacctgggttttggtggcattgctgag----ccttagccctggacggtctgaacagcttgccctgagagaccatt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197915735 315 + 198332218 cctcttgaagctggggatggcttcttggtagttctggtcaatagtagaccaactgaagactgctgggcccttcaagggaaacctctgcattcctgatagaagggacag---ctggggccattccttctcccttcttcctgcctttactggagacatgagact-gggcttgcagcagtgccaccattttagggtgcaagaaatcaagccaacacacttaagatgacgcagtagaaatcgagaaggaacctgggttttggtggcattgctgagccacccttagccctggacagtctgaacagcttgccctgagagaccgtt
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113673487 315 + 115148730 cctcttgaggctggggatggctttttggtagttctggtcaatagcagaccaactgaagactgctgggcccttcgagggaaacctctgcattcctaacagaagggacag---ctggggccattccttctcccttcttcctgcctttactggagacatgagact-gggcttgcagcagtgccaccattttagggtgcaagaaatcaagccaacacacttaagatgatgcagtagaaattgagaaggaacctgggttttggtggcattgctgagccacccttagccctggaacgtctgaacagcttgccctgagagaccatt
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183506839 318 + 184069350 cctcttgaagctggggatggctttttggtagttctggtcaataatagaccaatggaagattgctggacccttcaagggaaacctctgctttcctgataaaagggacaattcctggggccattccttctcccttcttcctgcctttactggagacatgagact-gggcttgcagcagtgccaccatttttgggtgcaagaaatcaagccaacacacttaagatgacagagtggaaactgagacggaacctgggttttggtggcgttgctgagccacgcttagccctggacggtctgaacagcttgccctgagagaccatt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188890105 318 + 189454096 CCTCTTGAAGCTGGGGATGGCTTTTTGGTAGTTCTGGTCAATAATAGACCAATGGAAGATTGCTGGACCCTTCAAGGGAAACCTCTGCTTTCCTGATAAAAGGGACAATTCCTGGGgccattccttctcccttcttcctgcctttactggagacatgagact-gggcttgcagcagtgccaccatttttgggtgcaagaaatcaagccaacacacttaagatgacagagtggaaactgagacggaacctgggttttggtggcgttgctgagccacccttagccctggacggtctgaacagcttgccctgagagaccatt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178313583 315 + 178775436 CCTCTTGAAGCTGGGGATGGCTTTTTGGTAGTTCTGGTCAataatagaccaatggaagattGCTGGGCCCTTCAAGGGAAACCTCTGCTTTCCTGATAAAAAGGACAG---CTGGGGTcattccttctcccttcttcctgcctttACTGGAGACATGAGACT-GGGCTTGCAGCAGTGTCACCATTTTGGGGTGCAAGAAATCAAGCCAACACACTTAAGACGACGGAGTAGAAACTGAGAGGGAACCTGGGCTTTGGCGGCATTGCTGAGCCACCCTTAGCCCTGGACGGTCTGAACAGCTTGCCCTGAGAGACCATT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135254727 315 + 135778131 cctcttgaagctggggatggctttttggtagttctggtcaataatagaccaatggaagactgctggacccttcaagggaaacctctgctttcctgataaaagggacag---ctggggccattccttctcccttcttcctgcctttactggagacatgagact-gggcttgcagcagtgccaccattttggggtgcaagaaatcaagccaacacacttaagacgacggagtggaaactgagacggaacttgggttttggtggcgttgctgagccacccttagccctggacagtctgaacagcttgccctgagagaccatt
i chlSab2.chr7             I 4 C 0
s canFam3.chr16             17822437 306 -  59632846 CCCCTTGAAATGAGAGAGAGTTTTTTGGGAGTT---GTCAGGTGCAGATAAGCTGAAGACTGCTGGGTGCTTCTGGAGAAACTGTTGCATTCCTGACACAAGGGACTG---GCAAAGCCATCCCTTCCCCCATCCTCCTGTCTTTACTAGAAACATGATCTTCGGGGTTGTAGCAGC-CAACTCTTTTATGACTCAAGAAATCAAGCTAACACACTTAAGACAGCAGAGCAAAAATCTAGAAGAAAGCTAGGTTTTACCAACATTGCCAA-----TCCTAATCCTGAACCATCTGTCTAAA-TACTGTGACAGATCATT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e calJac3.chr3             190397870  29 - 190850796 I

a score=1911.000000
s hg38.chr4_KI270925v1_alt    106825 1 +    555799 a
s ponAbe2.chr4             197916050 1 + 198332218 a
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183507157 1 + 184069350 a
i rheMac3.chr5             C 0 I 3
s macFas5.chr5             188890423 1 + 189454096 a
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178313898 1 + 178775436 A
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135255042 1 + 135778131 a
i chlSab2.chr7             C 0 I 4
s canFam3.chr16             17822743 1 -  59632846 A
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e calJac3.chr3             190397870 29 - 190850796 I
e nomLeu3.chr7b            113673802 0 + 115148730 C
e panTro4.chr4             192804375 0 + 193495092 C

a score=302.000000
s hg38.chr4_KI270925v1_alt    106826 2 +    555799 aa
s ponAbe2.chr4             197916051 2 + 198332218 ag
i ponAbe2.chr4             C 0 C 0
s canFam3.chr16             17822744 2 -  59632846 AA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135255043 4 + 135778131 I
e papAnu2.chr5             178313899 0 + 178775436 C
e macFas5.chr5             188890424 0 + 189454096 C
e rheMac3.chr5             183507158 3 + 184069350 I
e nomLeu3.chr7b            113673802 0 + 115148730 C
e panTro4.chr4             192804375 0 + 193495092 C

a score=67.000000
s hg38.chr4_KI270925v1_alt    106828 1 +    555799 t
s macFas5.chr5             188890424 1 + 189454096 c
i macFas5.chr5             C 0 I 2
s papAnu2.chr5             178313899 1 + 178775436 C
i papAnu2.chr5             C 0 I 2
s canFam3.chr16             17822746 1 -  59632846 T
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135255043 4 + 135778131 I
e rheMac3.chr5             183507158 3 + 184069350 I
e nomLeu3.chr7b            113673802 0 + 115148730 C
e ponAbe2.chr4             197916053 0 + 198332218 C
e panTro4.chr4             192804375 0 + 193495092 C

a score=-1689.000000
s hg38.chr4_KI270925v1_alt    106829 97 +    555799 ggctttatcgcggccgggcgcgggggctcacgcctgtaatcccagcactttgggaggccgagacgggcggatcacgaggtcaggagatcgagaccat
s canFam3.chr16             17822747 24 -  59632846 AGTGTCATTGC----------------------------------CATTTT---------------------------------------AAACCAT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135255043  4 + 135778131 I
e papAnu2.chr5             178313900  2 + 178775436 I
e macFas5.chr5             188890425  2 + 189454096 I
e rheMac3.chr5             183507158  3 + 184069350 I
e nomLeu3.chr7b            113673802  0 + 115148730 C
e ponAbe2.chr4             197916053  0 + 198332218 C
e panTro4.chr4             192804375  0 + 193495092 C

a score=0.000000
s hg38.chr4_KI270925v1_alt    106926 211 +    555799 cctggctaacacggtgaaaccccgtctctactaaaaatgcaaaaattagccgggcgtggtggcgcgcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagtcgagatcacaccactgcactccagcctgggcgacggagcgaaactccgtctcaaaaaaaaaaaaaaaaa
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17822771   0 -  59632846 C
e calJac3.chr3             190397870  29 - 190850796 I
e chlSab2.chr7             135255043   4 + 135778131 I
e papAnu2.chr5             178313900   2 + 178775436 I
e macFas5.chr5             188890425   2 + 189454096 I
e rheMac3.chr5             183507158   3 + 184069350 I
e nomLeu3.chr7b            113673802   0 + 115148730 C
e ponAbe2.chr4             197916053   0 + 198332218 C
e panTro4.chr4             192804375   0 + 193495092 C

a score=819.000000
s hg38.chr4_KI270925v1_alt    107137 3 +    555799 aaa
s panTro4.chr4             192804375 3 + 193495092 aaa
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113673802 3 + 115148730 aaa
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17822771 0 -  59632846 C
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135255043 4 + 135778131 I
e papAnu2.chr5             178313900 2 + 178775436 I
e macFas5.chr5             188890425 2 + 189454096 I
e rheMac3.chr5             183507158 3 + 184069350 I
e ponAbe2.chr4             197916053 0 + 198332218 C

a score=546.000000
s hg38.chr4_KI270925v1_alt    107140 1 +    555799 t
s panTro4.chr4             192804378 1 + 193495092 t
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197916053 1 + 198332218 t
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113673805 1 + 115148730 t
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17822771 0 -  59632846 C
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135255043 4 + 135778131 I
e papAnu2.chr5             178313900 2 + 178775436 I
e macFas5.chr5             188890425 2 + 189454096 I
e rheMac3.chr5             183507158 3 + 184069350 I

a score=2100.000000
s hg38.chr4_KI270925v1_alt    107141 1 +    555799 g
s panTro4.chr4             192804379 1 + 193495092 g
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197916054 1 + 198332218 g
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113673806 1 + 115148730 g
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183507161 1 + 184069350 g
i rheMac3.chr5             I 3 C 0
s macFas5.chr5             188890427 1 + 189454096 g
i macFas5.chr5             I 2 C 0
s papAnu2.chr5             178313902 1 + 178775436 G
i papAnu2.chr5             I 2 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17822771 0 -  59632846 C
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135255043 4 + 135778131 I

a score=19798.000000
s hg38.chr4_KI270925v1_alt    107142 9 +    555799 gctttatcg
s panTro4.chr4             192804380 9 + 193495092 gctttatca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197916055 9 + 198332218 gctttatca
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113673807 9 + 115148730 gctttatca
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183507162 9 + 184069350 gctttattg
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188890428 9 + 189454096 gctttattg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178313903 9 + 178775436 GCTTTATTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135255047 9 + 135778131 gctttattg
i chlSab2.chr7             I 4 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17822771 0 -  59632846 C
e calJac3.chr3             190397870 29 - 190850796 I

a score=1312527.000000
s hg38.chr4_KI270925v1_alt    107151 526 +    555799  
s panTro4.chr4             192804389 526 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197916064 525 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113673816 525 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183507171 521 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188890437 521 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178313912 522 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135255056 518 + 135778131  
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17822771 413 -  59632846  
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e calJac3.chr3             190397870  29 - 190850796 I

a score=1947631.000000
s hg38.chr4_KI270925v1_alt    107677 873 +    555799  
s panTro4.chr4             192804915 874 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197916589 867 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113674341 873 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183507692 884 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188890958 884 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178314434 821 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135255574 890 + 135778131  
i chlSab2.chr7             C 0 I 84
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17823184   0 -  59632846 C
e calJac3.chr3             190397870  29 - 190850796 I

a score=82048.000000
s hg38.chr4_KI270925v1_alt    108550 52 +    555799 aattaatgatattgagcatgtttacatatgcctgttgactaattttatgtct
s panTro4.chr4             192805789 52 + 193495092 aattaatgatattgagcatgtttacatatgcctgttgaccaattttatgtct
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197917456 52 + 198332218 gattaatgatattgagcacatttacatatacctgttgaccaattttatgtct
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113675214 52 + 115148730 gattaatgatattgagcacatttacatatacctgttgaccaattttatgtct
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183508576 52 + 184069350 gattaatgatattgacccccttttcatatacctgttgactgtttttatgtct
i rheMac3.chr5             C 0 I 33
s macFas5.chr5             188891842 52 + 189454096 gattaatgatattgacccccttttcatatacctgttgactgtttttatgtct
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178315255 52 + 178775436 gattaatgatattgacccccttttcatatacctgttgactGTTTTTATGTCT
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17823184  0 -  59632846 C
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135256464 84 + 135778131 I

a score=34650.000000
s hg38.chr4_KI270925v1_alt    108602 34 +    555799 ttggagaactgtctcattttttgcccaattttta
s panTro4.chr4             192805841 34 + 193495092 ttggagaactgtctcattttttgcccaattttta
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197917508 34 + 198332218 ttggagaactgtcccattttttgcccaattttta
i ponAbe2.chr4             C 0 I 3
s nomLeu3.chr7b            113675266 34 + 115148730 ttggagaactgtcccattttttgcccaattttta
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188891894 30 + 189454096 ctagataa----cccagtttttgcccaattttta
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178315307 30 + 178775436 CTAGAGAA----CCCAgtttttgcccaattttta
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17823184  0 -  59632846 C
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135256464 84 + 135778131 I
e rheMac3.chr5             183508628 33 + 184069350 I

a score=54823.000000
s hg38.chr4_KI270925v1_alt    108636 597 +    555799  
s panTro4.chr4             192805875 597 + 193495092  
i panTro4.chr4             C 0 M 778
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17823184   0 -  59632846 C
e calJac3.chr3             190397870  29 - 190850796 I
e chlSab2.chr7             135256464  84 + 135778131 I
e papAnu2.chr5             178315337   0 + 178775436 C
e macFas5.chr5             188891924   0 + 189454096 C
e rheMac3.chr5             183508628  33 + 184069350 I
e nomLeu3.chr7b            113675300   0 + 115148730 C
e ponAbe2.chr4             197917542   3 + 198332218 I

a score=0.000000
s hg38.chr4_KI270925v1_alt    109233 539 +    555799  
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17823184   0 -  59632846 C
e calJac3.chr3             190397870  29 - 190850796 I
e chlSab2.chr7             135256464  84 + 135778131 I
e papAnu2.chr5             178315337   0 + 178775436 C
e macFas5.chr5             188891924   0 + 189454096 C
e rheMac3.chr5             183508628  33 + 184069350 I
e nomLeu3.chr7b            113675300   0 + 115148730 C
e ponAbe2.chr4             197917542   3 + 198332218 I
e panTro4.chr4             192806472 778 + 193495092 M

a score=779.000000
s hg38.chr4_KI270925v1_alt    109772 3 +    555799 ata
s nomLeu3.chr7b            113675300 3 + 115148730 atc
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188891924 3 + 189454096 att
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178315337 3 + 178775436 atc
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17823184 0 -  59632846 C
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135256464 84 + 135778131 I
e rheMac3.chr5             183508628 33 + 184069350 I
e ponAbe2.chr4             197917542 3 + 198332218 I
e panTro4.chr4             192806472 778 + 193495092 M

a score=1365.000000
s hg38.chr4_KI270925v1_alt    109775 1 +    555799 a
s ponAbe2.chr4             197917545 1 + 198332218 a
i ponAbe2.chr4             I 3 C 0
s nomLeu3.chr7b            113675303 1 + 115148730 a
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183508661 1 + 184069350 a
i rheMac3.chr5             I 33 C 0
s macFas5.chr5             188891927 1 + 189454096 a
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178315340 1 + 178775436 a
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17823184 0 -  59632846 C
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135256464 84 + 135778131 I
e panTro4.chr4             192806472 778 + 193495092 M

a score=11655.000000
s hg38.chr4_KI270925v1_alt    109776 6 +    555799 tgttat
s panTro4.chr4             192807250 6 + 193495092 Tgttat
i panTro4.chr4             M 778 C 0
s ponAbe2.chr4             197917546 6 + 198332218 tgttat
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113675304 6 + 115148730 tgttat
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183508662 6 + 184069350 tgttat
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188891928 6 + 189454096 tgttat
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178315341 6 + 178775436 tgttat
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17823184 0 -  59632846 C
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135256464 84 + 135778131 I

a score=872460.000000
s hg38.chr4_KI270925v1_alt    109782 377 +    555799 ttgtttttctgctattgggttgtaagagttattttttaaatttaggatattaacacattatcaaatatgcagtttgcaaatatcttctacacttctgtcatttgcctcttgg-tttgttgattgcttcctttgctgtgcagaaaatttttagtttgatgtaaccccatttgcttatttttgattt-gcagcctgggctttaagtgtgatgt-ccaaaaaattattgccactttcccctatgttttcttctaggagttttataatttctggtcttccatttaggtctttttttcattttgagttgatttttgtgaatggagtaagataagcatccagttttattcatttgcatgtggaaatacagtttttccaacaccata
s panTro4.chr4             192807256 378 + 193495092 ttgtttttctgctattgggttgtaagagttattttttaaatttaggatattaacacattatcaaatatgcagtttgcaaatatcttctacacctctgtcatttgcctcttgg-tttgttgattgcttcctttgctgtgcagaaaatttttagtttgatgtagccccatttgcttatttttgcttttgcagcctgggctttaagtgtgatgt-ccaaaaaattattgccactttcccctatgttctcttctaggagttttataatttctggtcttccatttaggtctttttttcattttgagttgatttttgtgaatggagtaagataagcatccagttttattcatttgcatgtgaaaatacagtttttccaacaccata
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197917552 379 + 198332218 ttgtttttctgctattgggttgtaagagttattttttaaatttaggatattaacacattatcaaatatgcagtttgcaaatatcttctacacctctgtcatttgcctcttggctttgttgattgcttcctttgctgtgcagaaaatttttagtttgatgtagccccatttgcttatttttgcttttgtagcctgggctttaagtgtgatgt-ccaaaaaattattgccactttcccctatgttctcttctaggagttttataatttctggttttccatttaggtctttttttcattttgagttgatttttttgaatggagtaagataagcatccagttttattcatttgcatgtggaaatacagtttttccaacaccatt
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113675310 375 + 115148730 ttgtttttctgctattgggttgtaagagttattttttaaatttaggatattaacacattatcaaatatgcagtttgcaaatatctcctacacctctgtcatttgcctctaggctttgttgattgcttcctttgctgtgcagaaaatctttagtttgatgtagccccatttgcttatttttgcttttgtagcctgggctt----tgtgatgt-ccaaaaaattattgccactttcccctatgttctcttctaggagttttataatttctggtcttccatttaggtattttattcattttgagttgatttttgtgaatggagtaagataagcatccagttttattcatttgcatgtggaaatacagtttttccaacaccata
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183508668 379 + 184069350 ttgtttttctgctattgggttgtaagagttattttttaaatttaggatattaacacgttatcagatatgcagtttgcaaatatcttctacacctctgtcgtttgcctcttggctttgttgattgcttcctttgctgtgaagaacagttttagtttgatgcag-cccatttgtttgtttttgctgttgtagcctgggctttaagtgagatgtacaaaaaaatcattgccactttcccctgcattctcttctaggagttttataatttctggtcttccgtttaggtctgatactcattttgagttgatttttgtgagtggagtaagataagcatccagttttattcatttccatgtggaaatacagtttttccaacaccttt
i rheMac3.chr5             C 0 I 36
s macFas5.chr5             188891934 379 + 189454096 ttgattttctgctattgggttgtaagagttattttttaaatttaggatattaacacgttatcagatatgcagtttgcaaatatcttctacacctctgtcgtttgcctcttggctttgttgattgcttcctttgctgtgaagaacagttttagtttgatgcag-cccatttgtttgtttttgctgttgtagcctgggctttaagtgagatgtacaaaaaaatcattgccactttcccctgcattctcttctaggagttttataatttctggtcttccgtttaggtctgatactcattttgagttgatttttgtgagtggagtaagataagcatccagttttattcatttccatgtggaaatacagtttttccaacaccttt
i macFas5.chr5             C 0 I 5
s papAnu2.chr5             178315347 379 + 178775436 ttgtttttctgctattgggttgtaagagttattttttaaatttaggatatTAACACGTTATCAGATAggcagtttgcaaatatcttctacACCTCTGTCGTTTGCCTCTTGgctttgttgattgcttcctttgctgtgaagaacagttttagtttgatgcag-cccatttgtttgtttttgctgttgtagCCTGGGCTTTAAGTGagatatacaaaaaaatcattgccactTTCCCCTGCGttctcttctaggagttttataatttCTGGTCTTCCGTTTAGGTCTGATactcattttgagttgatttttgtgagTGGAGTAAGAGAAGCATCCAGTCTTATTCATCTGCATATGGAAAtacagtttttccaacaccatt
i papAnu2.chr5             C 0 I 14
s chlSab2.chr7             135256548 377 + 135778131 ttgtttttctgctattgggttgtaagagttattttttaaatttagggtattaacacattatcagatatgcagtttgcaaatatcttctacgcctctgtcgtttgcctcttggctttgttgattgcttcctttgctgtgaagaacagtttcagtttgatgtag-cccatttgtttgtttttgctattgtagcctgggctttaagtgagatgt-ccaaaaaatcattgccactttcccctgtgttctcttctaggagttttataatttctggtcttccgtttaggtctgatactcattttgagttgatttttgtgagtggagtaagataagcatccagttttattcatttgcatgtgcaaatacagttttt-caacgccatt
i chlSab2.chr7             I 84 I 17
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17823184   0 -  59632846 C
e calJac3.chr3             190397870  29 - 190850796 I

a score=34580.000000
s hg38.chr4_KI270925v1_alt    110159 24 +    555799 tttttttttt-------gagacagagtttcg
s panTro4.chr4             192807634 25 + 193495092 tttttttttt------tgagacagagtttcg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197917931 31 + 198332218 tttttttttttttttttgagacagagtttcg
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113675685 28 + 115148730 gttttttttt---ttttgagacagagtttct
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188892318 24 + 189454096 -ttttttttt------tgagacagagtctca
i macFas5.chr5             I 5 C 0
s papAnu2.chr5             178315740 24 + 178775436 -ttttttttt------tgagacagagtctcc
i papAnu2.chr5             I 14 C 0
s chlSab2.chr7             135256942 24 + 135778131 -ttttttttt------tgagacagagtctcg
i chlSab2.chr7             I 17 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17823184  0 -  59632846 C
e calJac3.chr3             190397870 29 - 190850796 I
e rheMac3.chr5             183509047 36 + 184069350 I

a score=8088254.000000
s hg38.chr4_KI270925v1_alt    110183 3500 +    555799  
s panTro4.chr4             192807659 3465 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197917962 3472 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113675713 3468 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183509083 3496 + 184069350  
i rheMac3.chr5             I 36 C 0
s macFas5.chr5             188892342 3490 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178315764 3493 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135256966 3491 + 135778131  
i chlSab2.chr7             C 0 I 277
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17823184    0 -  59632846 C
e calJac3.chr3             190397870   29 - 190850796 I

a score=1688592.000000
s hg38.chr4_KI270925v1_alt    113683 747 +    555799  
s panTro4.chr4             192811124 742 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197921434 741 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113679181 738 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183512579 751 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188895832 752 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178319257 748 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135260734 801 + 135778131  
i chlSab2.chr7             I 277 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17823184   0 -  59632846 C
e calJac3.chr3             190397870  29 - 190850796 I

a score=4466106.000000
s hg38.chr4_KI270925v1_alt    114430 1744 +    555799  
s panTro4.chr4             192811866 1750 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197922175 1726 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113679919 1731 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183513330 1727 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188896584 1727 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178320005 1728 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135261535 1725 + 135778131  
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17823184 1753 -  59632846  
i canFam3.chr16            C 0 I 4
e mm10.chr8                 87516732 3032 - 129401213 I
e calJac3.chr3             190397870   29 - 190850796 I

a score=1222251.000000
s hg38.chr4_KI270925v1_alt    116174 524 +    555799  
s panTro4.chr4             192813616 524 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197923901 523 + 198332218  
i ponAbe2.chr4             C 0 M 3000
s nomLeu3.chr7b            113681650 520 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183515057 528 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188898311 528 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178321733 527 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135263260 526 + 135778131  
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17824937   4 -  59632846 I
e calJac3.chr3             190397870  29 - 190850796 I

a score=8022.000000
s hg38.chr4_KI270925v1_alt    116698 4 +    555799 tgag
s panTro4.chr4             192814140 4 + 193495092 tgag
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113682170 4 + 115148730 tgag
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183515585 4 + 184069350 tgag
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188898839 4 + 189454096 tgag
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178322260 4 + 178775436 TGAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135263786 4 + 135778131 tgag
i chlSab2.chr7             C 0 I 114
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17824937 4 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e ponAbe2.chr4             197924424 3000 + 198332218 M

a score=47827.000000
s hg38.chr4_KI270925v1_alt    116702 36 +    555799 ggggcctgggcagctggagcagagtgagcgaacggg
s panTro4.chr4             192814144 36 + 193495092 ggggcctgggcagctggagcagagtgagcgaacagg
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113682174 36 + 115148730 ggggcctgggcagctggagcagagtgagcgaagggg
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183515589 36 + 184069350 gagacctgggcagctggagcagagtgagcgaatggg
i rheMac3.chr5             C 0 I 3
s macFas5.chr5             188898843 36 + 189454096 gagacctgggcagctggagcagagtgagcgaatggg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178322264 36 + 178775436 GAGGCCTGGGcagctggagcagagtgagcgAATGGG
i papAnu2.chr5             C 0 I 3
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17824937  4 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135263790 114 + 135778131 I
e ponAbe2.chr4             197924424 3000 + 198332218 M

a score=8008.000000
s hg38.chr4_KI270925v1_alt    116738 45 +    555799 atgggaccagagatccagcaagggaccagaccatgtcagccctca
s panTro4.chr4             192814180 45 + 193495092 atgggaccagggacccagcaagggaccagaccatgtcagccctca
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113682210 45 + 115148730 atgggaccagagacccagcaagggaccagaccatgtcagccctca
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188898879  3 + 189454096 ---------------------------------CGT---------
i macFas5.chr5             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17824937  4 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135263790 114 + 135778131 I
e papAnu2.chr5             178322300  3 + 178775436 I
e rheMac3.chr5             183515625  3 + 184069350 I
e ponAbe2.chr4             197924424 3000 + 198332218 M

a score=680621.000000
s hg38.chr4_KI270925v1_alt    116783 396 +    555799 ggggccactgaagaaactcaggctgcctgg-aaaaaagaggggctaccactgggtaattttgagtaagagcaacattgtcttaactaactttacaaaatatctcagttttatgttgacaaaagTCATAACTACTTTAAAATAAGCAATGACTTTCTCCAAGCTATTTTATTTAGATTCAAGCTGCTGTGAGCCAGTGGGTAGTAGTTAAGATTAATATGCAAATAACACATTTTAAACTGCAGGAGTGAATTACATTTCTAGGGCTGCTAAAACAATTGCAACTTTTTAGACTCCCATG-------------------------------------------AATGTGACATTttcacttgcattatattattttaattttacaatctgcttgccaaagag-------------------------aggtcattccttccattttacaatgaggaaactgagtcc
s panTro4.chr4             192814225 395 + 193495092 ggggccagtgaagaaactcaggctgcctgg-aaaaaagaggggctaccactggttaattttgagtaagagcaacattgtctTAACTAACTTTACAAAATATCTCAGTTTTATGTTGACAAAAGTCATAACTACTTTAAAATAAGCAATGACTTTCTCCAAGCTATTTTATTTAGATTCAAGC-GCTGTGAGCCAGTGGGTAGTAGTTAAGATTAATATGCAAATAACGCATTTTAAACTACAGGAGTGAATTACATTTCTAGGGCTGCTAAAACAATTGCAAGTTTTTAGACTCCCATG-------------------------------------------AATGTGACATTttcacttgcattatattattttaattttacaatctgcttgccaaaaag-------------------------aggtcattccttccattttacagtgaggaaactcagTCC
i panTro4.chr4             C 0 I 14
s nomLeu3.chr7b            113682255 396 + 115148730 ggggccactgaagaaactcaggctgcctgg-aaaaaagaggggctaccactgggaaattttgagtaaaggcaatattgtcttaactaactttacaaaatatctcagttttgtgttgacaaaagTCATAACTACTTTAAAATAAGCAATGACTTTCTCCAAGCTATTTTATTTAGATTCAAGCTGCCCTGGGCCAGTGGGTAGTAGTTAAGATTAATATGCAAATAACACATTTTAAACTACAGGAGTGAATTACATTTCTAGAGCTGCTAAAACAATTGCAACTTTTTAGACTCCCATG-------------------------------------------AATGTGAcattttcacttacattatattattttaatttgacaatctgattgccaaagag-------------------------aggtcattccttccattttacgatgaagaaacggagtcc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183515628 395 + 184069350 GGGACCACTGTAGAAACACAGGTTGCCTGG-AAAAAAGAGGGGCTACCACCGGGCAATTTTGAGTAAAGGCAACATTGTCTTAACTAACTTTACAAAATATCTGAGTTTTGTGTTGACAAAAGTCATAACTACTTTAAAATAAGCAATGACTTTCTCCAAGCTATTTTACTTAGATTCAAGCTGCTGTGAGCCAGTGGGTAGTAGTTAAGATTAATACACAAATAACACATTTTAAACTGCAGGAGTGAATTACATTTCTGGGGCTGCTAAAACCATTGCAACTTTTTAGATGCCCATG-------------------------------------------AATGTGAca-tttcactggcattatattattttaactttacaatctgcttgccaaagac-------------------------aggtcattccttccaccttacaatgaggaaactgagtcc
i rheMac3.chr5             I 3 C 0
s macFas5.chr5             188898882 395 + 189454096 GGGACCACTGTAGAAACACAGGTTGCCTGG-AAAAAAGAGGGGCTACCACCGGGCAATTTTGAGTAAAGGCAACATTGTCTTAACTAACTTTACAAAATATCTGAGTTTTGTGTTGACAAAAGTCATAACTACTTTAAAATAAGCAATGACTTTCTCCAAGCTATTTTACTTAGATTCAAGCTGCTGTGAGCCAGTGGGTAGTAGTTAAGATTAATACACAAATAACACATTTTAAACTGCAGGAGTGAATTACATTTCTGGGGCTGCTAAAACCATTGCAACTTTTTAGATGCCCATG-------------------------------------------AATGTGAca-tttcactggcattatattattttaactttacaatctgcttgccaaagac-------------------------aggtcattccttccaccttacaatgaggaaactgagtcc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178322303 464 + 178775436 GGGAGCACTGTAGAAACGCAGGTTGCCTGGaaaaaaaGAGGGGCTACCACCGGGCACTTTTGAGTAAAGGCAACATTGTCTTAACTAACTTTACAAAATATCTGAGTTTTGTGTTGACAAAAGTCATAACTACTTTAAAATAAGCAATGACTTTCTCCAAGCTATTTTACTTAGATTCAAGCTGCTGTGAGCCAGTGGGTAGTAGTTAAGATTAATACacaaagaacacattttaaaCTACAGGAGTGAATTACATTTCTGGGGCTGCTAAAACCATTGCAACTTTTTAGACGCCCATGAATGTGACATTTCACTGGCATTATATTATTAGACGCCCAGTGAAATGTGACA-TTTCACtggcattatattattttaactttacaaTCTGCTTGCCAAAGTCAGGTCATTCCTTCCACTTTACAATGAGGTCATTCCTTCCACTttacaatgaggaaactgagtcc
i papAnu2.chr5             I 3 C 0
s chlSab2.chr7             135263904 396 + 135778131 GGGACCACTATAGAAACGCAGGCTGCCTGGAAAAAAAGAGGGTCTACCACCGGGCAATTTTGAGTAAAGGCAACATAGTCTTAACTAACTTTGCAAAATATCTGAGTTTTGTGTTGACAAAAGTCATAACTACTTTAAAATAAGCAATGACTTTCTCCAAGCTATTTTACTTAGATTCAAGCTGCTGTGAGCCAGTGGGTAGTAGTTAAGATTAATATGCAAATAACACATTTTAAACTACAGGAGTGAATTACATTTCTAGGGCTGCTAAAACCATTGCAACTTTTTAGACGCCCATG-------------------------------------------AATGTGAca-tttcactggcattatattattttaactttacaatctgcttgccaaagac-------------------------aggtcattccttccaccttacagagaggaaactgagccc
i chlSab2.chr7             I 114 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17824937   4 -  59632846 I
e calJac3.chr3             190397870  29 - 190850796 I
e ponAbe2.chr4             197924424 3000 + 198332218 M

a score=566556.000000
s hg38.chr4_KI270925v1_alt    117179 446 +    555799 t------------agaaagg-----------ttaagaacagttggcccatatgcagaaaactgaaactagaccccttccttacactttatacaaaaattaactcaagatggactaaagacttaaacataaaactccaatccataaaaaccctagaagaaaacctagggaataccattcaggacataagcatgggcaaagacttcataactaaaacaccaaaaacaatggcagcaaaagccaaattgacaaatgggatctaattaaactaaagagcttctgcacaacaacaataaaaa-actatcatcagagtgaacaggcaacctacagaatgggagaaaatttttgcaatctacccatctgacaaaggtctaatatccaaaatctacaaggaacttaaacaaatctacaag-aaaaaaacaaacaaccccatcaaaaagt-gggcaaagtatatgaacagacacttttcaa
s nomLeu3.chr7b            113682651 448 + 115148730 t------------agaaaag-----------ttaagAACAGTTGGCccatatgcagaaaactgaaactagaacccttccttacactttatacaaaaattaactcaagatggattaaagacttaaacataaaactccaatcaataaaaaccctagaagaaaacctagggaataccattcaggacataggcacgggcaaagacttcataactaaaacaccaaaagcaatggcaacaaaagccaaattgacaaacgggatctaattaaactaacgagcttctgcacaacaacaacaaaaa-actatcatcagagtgaacaggcaacctacagaaagggagaaaatttttgcaatctacccatctgacaaaggtctaacatccaaaatctacaaggaatttaaacaaatttgcaagaaaaaaaacaaacaaccccatcaaaaagtggggcaaagtatataaacagacacttttcaa
i nomLeu3.chr7b            C 0 I 233
s rheMac3.chr5             183516023 446 + 184069350 t------------agaaagc-----------ttaagaacagttggcccacatgcagaaaactgaccctggaccccttccttacactttagacaaaaattaactcaagatggattaaagacttaaacataaaattccaatccataaaaaccctagaataaaacctatggaataccattcagggcacaggtgtgggcaaagccttcatgactaaaacaccaaaaacaatggcaacaaaagccaaattgacaaatgggatctaattaaactaaagagcttctgcacaacaacaacaaaaa-actatcatcagagtgaacaggcaacctacagaatgggagaaaagttttgcaatctacccatctgacaaaggtctaatatccaaaatctacaaggagcttaagcaaatgtacaag-aaaaaaacaaacaatcccatcaaaaagt-gagcaaagtgtatgaacagacacttttcaa
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188899277 446 + 189454096 t------------agaaagc-----------ttaagaacagttggcccacatgcagaaaactgaccctggaccccttccttacactttagacaaaaattaactcaagatggattaaagacttaaacataaaattccaatccataaaaaccctagaataaaacctatggaataccattcagggcacaggtgtgggcaaagccttcatgactaaaacaccaaaaacaatggcaacaaaagccaaattgacaaacgggatctaattaaactaaagagcttctgcacaacaacaacaaaaa-actatcatcagagtgaacaggcaacctacagaatgggagaaaagttttgcaatctacccatctgacaaaggtctaatatccaaaatctacaaggagcttaaacaaatgtacaag-aaaaaaacaaacaaccccatcaaaaagt-gagcaaagtgtatgaacagacacttttcaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178322767 469 + 178775436 tcATTCCTCAATGAGGAAACCTCCAATGAGGTTAAGAACAGTTGgcccatatgcagaaaactgaccttggaccccttccttacactttagacaaaaattaactcaagatggattaaagacttaaacataaaactccaatccataaaaaccctagaataaaacctatggaataccattcaggacacaggtgtgggcaaagacttcatgactaaaacaccaaaagcagtggcaacaaaagccaaattaacaaacgggatctaattaaactaaagagcttctgcacaacaacaacaaaaa-actatcatcagagtgaacaggcaacctacagaatgggagaaaatgtttgcaatctacccatctgagaaaggtctaatatccaaaatctacaaggaacttaaacaaatgtacaag-aaaaaaaccaacaacctcatcaaaaagt-gggcaaagtgtatgaacagacacttttcaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135264300 447 + 135778131 t------------agaaagg-----------ttaagaacagttggcccatatgcagaaaactgaccttggaccccttccttacactttagacaaaaattaactcaagatggattaaagacttaaacataaaattccaatccataaaaaccctagaataaaacctatggaataccattcaggacacaggtgtgggcaaagccttcatgactaaaacaccaaaaacaatggcaacaaaagccaaattgacaaacgggatctaattaaactaaagagcttctgcacaataacaatgaaaatactatcatcagagtgaacaggcaacctacagaatgggagaaaagttttgcaatctacccatctgacaaaggtctaatatccaaaatctacaaggaacttaaacaaatgtacaag-aaaaaaacaaacaaccccatcaaaaagt-gggcaaagtgtatgaacagacacttttcaa
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17824937   4 -  59632846 I
e calJac3.chr3             190397870  29 - 190850796 I
e ponAbe2.chr4             197924424 3000 + 198332218 M
e panTro4.chr4             192814620  14 + 193495092 I

a score=42198.000000
s hg38.chr4_KI270925v1_alt    117625 46 +    555799 aagaagacatttatgtggccaacaaacgtatgaaaaaaactcaaca
s rheMac3.chr5             183516469 46 + 184069350 aagaagacatttatgtggccaacaaacatatgaaaaaagctcaaca
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188899723 46 + 189454096 aagaagacatttatgtggccaacaaacatatgaaaaaagctcaaca
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178323236 46 + 178775436 aagaagacatttatgtggccaacaaacatatgaaaaaagctcaaca
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135264747 46 + 135778131 aagaagacatttatgtggccaacaaacatatgaaaaaagctcaaca
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17824937  4 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e nomLeu3.chr7b            113683099 233 + 115148730 I
e ponAbe2.chr4             197924424 3000 + 198332218 M
e panTro4.chr4             192814620 14 + 193495092 I

a score=0.000000
s hg38.chr4_KI270925v1_alt    117671 2959 +    555799  
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17824937    4 -  59632846 I
e calJac3.chr3             190397870   29 - 190850796 I
e chlSab2.chr7             135264793    0 + 135778131 C
e papAnu2.chr5             178323282    0 + 178775436 C
e macFas5.chr5             188899769    0 + 189454096 C
e rheMac3.chr5             183516515    0 + 184069350 C
e nomLeu3.chr7b            113683099  233 + 115148730 I
e ponAbe2.chr4             197924424 3000 + 198332218 M
e panTro4.chr4             192814620   14 + 193495092 I

a score=243875.000000
s hg38.chr4_KI270925v1_alt    120630 2913 +    555799  
s panTro4.chr4             192814634 2859 + 193495092  
i panTro4.chr4             I 14 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17824937    4 -  59632846 I
e calJac3.chr3             190397870   29 - 190850796 I
e chlSab2.chr7             135264793    0 + 135778131 C
e papAnu2.chr5             178323282    0 + 178775436 C
e macFas5.chr5             188899769    0 + 189454096 C
e rheMac3.chr5             183516515    0 + 184069350 C
e nomLeu3.chr7b            113683099  233 + 115148730 I
e ponAbe2.chr4             197924424 3000 + 198332218 M

a score=1120445.000000
s hg38.chr4_KI270925v1_alt    123543 900 +    555799  
s panTro4.chr4             192817493 890 + 193495092  
i panTro4.chr4             C 0 M 721
s rheMac3.chr5             183516515 908 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188899769 909 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178323282 897 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135264793 917 + 135778131  
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17824937   4 -  59632846 I
e calJac3.chr3             190397870  29 - 190850796 I
e nomLeu3.chr7b            113683099 233 + 115148730 I
e ponAbe2.chr4             197924424 3000 + 198332218 M

a score=43018.000000
s hg38.chr4_KI270925v1_alt    124443 51 +    555799 GAGGACTTTATATTATGTGTTAAACTTAATGAACCTGGGGGAACTTTTTCA
s rheMac3.chr5             183517423 51 + 184069350 GAGGACTTCATATCATGTGCTAAGCTTAATGAATCTGGGGGAACTTTTTCA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188900678 51 + 189454096 GAGGACTTCATATCATGTGCTAAGCTTAATGAATCTGGGGGAACTTTTTCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178324179 51 + 178775436 gaggacttCGTATCATGTGCTAAGCTTAATGAATCTGGGGGAACTTTTTCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135265710 50 + 135778131 GAGGACTTCATATCATGTGCTAAGCTTAATGAATCTGGGGGAA-TTTTTCA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17824937  4 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e nomLeu3.chr7b            113683099 233 + 115148730 I
e ponAbe2.chr4             197924424 3000 + 198332218 M
e panTro4.chr4             192818383 721 + 193495092 M

a score=717529.000000
s hg38.chr4_KI270925v1_alt    124494 571 +    555799  
s nomLeu3.chr7b            113683332 577 + 115148730  
i nomLeu3.chr7b            I 233 C 0
s rheMac3.chr5             183517474 599 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188900729 599 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178324230 575 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135265760 588 + 135778131  
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17824937   4 -  59632846 I
e calJac3.chr3             190397870  29 - 190850796 I
e ponAbe2.chr4             197924424 3000 + 198332218 M
e panTro4.chr4             192818383 721 + 193495092 M

a score=20616.000000
s hg38.chr4_KI270925v1_alt    125065 11 +    555799 TAAAGCTGGCT
s panTro4.chr4             192819131 11 + 193495092 TAAAGCTGGGT
i panTro4.chr4             M 721 C 0
s nomLeu3.chr7b            113683909 11 + 115148730 TAAAGCTGGCT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183518073 11 + 184069350 taaagctgGCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188901328 11 + 189454096 TAAAGCTGGCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178324805 11 + 178775436 TAAAGCTGGCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135266348 11 + 135778131 TAAAGCTGGCT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87516732 3032 - 129401213 I
e canFam3.chr16             17824937  4 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e ponAbe2.chr4             197924424 3000 + 198332218 M

a score=361145.000000
s hg38.chr4_KI270925v1_alt    125076 177 +    555799 ATTATGAAACAATAGTA---ATGCTAATTATTACAATAATAAGCCCACAT----AATAACAAAATGCAGTCATGATAAATTTGTTTTTTCCTT---AATTAGGACAATTTTATTTTACAAAGGAAGAT-----CACCAACACTTTCTTATTTCTAGCAG------------------TGTTCAAGTACAAATATTTCCAAATAGTGCAGA
s panTro4.chr4             192819142 180 + 193495092 ATTATGAAACAATAGTA---ATGCTAATTATTACAATAATAAGCCCACAT----AATAACAAAATGCAGTCATGATAAATTTGTTTTTTCCTTCTTAATTAGGACAATTTTATTTTACAAAGGAAGAT-----CACCAACACTTTCTTATTTCTAGCAG------------------TGTTCAGGTACAAATATTTCCAAATAGTGCAGA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113683920 183 + 115148730 ATTATGAAATAACAATAACCATGCTGATTATTACAATAATAAGCGCACAT----AATAACAAAACACAGTCATAATAAATTTGGTTTTTCCTTCCTAATCAGGACAACTTTATTTCACAAAGGAAGAT-----CACCAGCACTTTCTTATTTCTAGCAC------------------TGTTCAAGTACAAATATTTCCAAATAGTGTAGA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183518084 180 + 184069350 ATTATGAAACAATAATA---ATGCTAATTATTACAGTAATAATCCCACAT----AATAACAAAATACAGTCATAATAAATTTGTTTTTTCCTTCTTAATTGGGACAATTTTATTTTACAAAGGAAGAT-----CACCAGCACTTTCTTATTTCTAGCAG------------------TGTTCAAGTACAAATATTTCCAAATAGTGTAGA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188901339 180 + 189454096 ATTATGAaacaataata---atgctaattattacagtaataatcccacat----aataacaaaatacagtcataataaATTTGTTTTTTCCTTCTTAATTGGGACAATTTTATTTTACAAAGGAAGAT-----CACCAGCACTTTCTTATTTCTAGCAG------------------TGTTCAAGTACAAATATTTCCAAATAGTGTAGA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178324816 180 + 178775436 ATTACGAAACAATAATA---ATGCTAATTATTACAGTAATAATCCCACAT----AATAACAAAATACAGTCCTAGTAaatttgtttttcccttcttaattgggacaattttattttacaaaggaagaT-----CACCAGCACTTTCTTATTTCTAGCAG------------------TGTTCAAgtacaaatatttccaaatagtGTAGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135266359 180 + 135778131 ATTATGAaacaataata---atgctaattattacagtaataatcccacat----aataacaaaatacagtcataataaATTTGTTTTTTCCTTCTTAATTGGGACAATTTTATTTTACAAAGGAAGAT-----CACCAGCACTTTCTTATTTCTAGCAG------------------CGTTCAAGTACAAATATTTCCAAATAGCGTAGA
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87519764 202 - 129401213 ataataaaataataGTC-------TGAGTATTATAATAATAAGCATGCATGAAGAATTCTAAGTTATAATCATAGT-AATTTGTCTTCTTCCATTTAATTAAGGCAATTTTATCTTACAATGAAGAACAATGACACTAGAACTTTCTCATTCCTAGCAGAAAAAAATAGGTTGTATTTGTTCAAGTACAGATACTCCCTAATAGCAAAGA
i mm10.chr8                I 3032 I 20
e canFam3.chr16             17824937   4 -  59632846 I
e calJac3.chr3             190397870  29 - 190850796 I
e ponAbe2.chr4             197924424 3000 + 198332218 M

a score=728150.000000
s hg38.chr4_KI270925v1_alt    125253 440 +    555799 ATGATTACTACAATACTAGTAATCCTACAGTGtaagatttttcgactttacaatggtgcataggtgatgggcactcagtagacaccgcattttgaactgagctctttgcctgggctagcagcatgtggtaggaagactcttgggatgcagatc-ggggcggccagccccagcttccaggaagctgggaaatccaggggaatcaaccaacaccacactccacagtgcgctgtgttcatgaatgacatgagatatgcaatacttttttataaaaggcttcatattagatgattctgccaatcatgggctaatgtaagtgttctgggtatatttaaggtaggcgagacctgtgatgttctgtaggtgagatatattaaatgcattttccaattacgatgggtttgtcaggatgtaaccct---attatgtcaagtaggagcatctgt
s panTro4.chr4             192819322 440 + 193495092 ATGATTACTACAATACTAGTAATCCTACAGTGtaagatttttcgactttacaatggtgcataggtgatgggcactcagtagacaccgcattttgaactgagctctttgcctgggctagcagcatgtggtaggaagactcttgtgatgcagatt-ggggcggccagccccagcttccaggaagccaggaaatccaggggaatcaaccaacaccacactccacagtgtgctgtgttcatgaatgacatgagatatgcaatacttttttataaaaggcttcatattagatgattctgccaatcataggctaatgtaagtgttctgggtatatttaaggtaggtgagacctgtgatgttctgtaggtgagatatattaaatgcattttccaattacgatgggtttgtcaggatgtaaccct---attatgtcaagtaggagcatctgT
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113684103 439 + 115148730 ATGATTAGTACAATACTAGTAATCCTACAGTGtaagatttttcgactttacaatggtgcataggtgatacgcactcagtagacactgcattttgaactgagctctttgtctgggctagcagcatgtggtagcaagactc--gtgaggcagagcaggggcagccaaccccagcttccaggaagccgggcgatccgggggaatcaaccaacaccacaccccacagtgcgctgtgttcatgaatgacataagatatgcaatacttttttataaaaggcttcatattagaagagtctgccaatcataggctaatataagtgttttgggcatatctaaggtaggcgagacctgtgatgttcggtaggtgaagtatattaagtgcattttccacttatgctgggtatgtcaggatgtaaccct---atcatgtcaaggaggagcatctgT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183518264 438 + 184069350 ATGATTCGTACAATACTAGTAACCCTACAGTGtaagagtttttgactttacaatggtgcataggtgatgcacgttcagtaaacaccgcattttgaactgtgctctttgcctgggctagcagcatgtggcaggaagaccctcaggatgcacatcaggggcagccagtcccagcttccaggaagccgggggatccaagggcatcaaccaacactgcaccccacagtgcgctgagttcatgaatgacatgagatatgcaacacttttttataaaaagtttcatattagatgattctgctaatcacaggccagagtaagtgttctgggcgtatgtaaggtgggcgagacctgtgatgttcggtaggtgaggtatattaagtacattttccacttatga------tgtcaggatgtaaccctatcattatgtcaaggaggagcatctgT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188901519 438 + 189454096 ATGATTAGTACAATACTAGTAACCCTACAGTGtaagagtttttgactttacaatggtgcataggtgatgcacgttcagtaaacaccgcattttgaactgtgctctttgcctgggctagcagcatgtggcaggaagaccctcaggatgcacatcaggggcagccagtcccagcttccaggaagccgggggatccaagggcatcaaccaacactgcaccccacagtgcgctgagttcatgaatgacatgagatatgcaacacttttttataaaaagcttcatattagatgattctgctaatcacaggccagagtaagtgttctgggcgtatgtaaggtgggcgagacctgtgatgttcggtaggtgaggtatattaagtacattttccacttatga------tgtcaggatgtaaccctatcattatgtcaaggaggagcatctgT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178324996 438 + 178775436 ATGATTAGTACAATACTAGTAACCCTACAGTGtaagattttttgactttacaatggtgcatAGGTGATGTGCATTCAGTAGACACCGCATTTTGAACTGTGCTCTTTGCCTGGGCTAGCAGCATGTGGCAGGAAGACCCTCAGGATGCACATCAGGGGCAGCCAGCCCCAGCTTCCAGGAAGCCAGGCGATCCAGGGGCATCAACCAACACTGCACCCCACAGTGCGCTGAGTTCATGAATGACATGAGATCTGCAATACTTTTTTATAAAAAGCTTCATATTAGATGATTCTGCCAATCACAGGCCAGTGTAAGTGTTATGGGCGTATTTAAGGTGGGTGAAACCTGTGATGTTTGGTAGGTGAGGTATATTAAGTACGTTTTCCACTCATGA------TGTCAGGATGTAACCCTATCATTATGTCAGGGAGGAGCATCTGT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135266539 438 + 135778131 ATGATTAGTACAATACTAGTAACCCTACGGTGtaagattttttggctttacgatggtgcacaggtgacgtgcgttcagcggacaccacatcttggactgtgctctttgcctgggctaacaccatgtggcaggaagaccctcaggatgcacctcaggggcagccagtcccagcttccaggaagccgggcaatccaggggcatcaaccaacactgcaccccacagtgcgctgagttcatgaatgacatgagatatgcaacatttttttataaaaagcttcgtattagatgattctgccaatcacaggccagtgtaagtgttctgggcgtatgtaaggtgggcgagacctgtgaagttcggtaggtgaggtatattaagtgtattttccacttatga------tgtcaggatgtaaccctatcattatatcaaggaggagcatctgT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87519966  20 - 129401213 I
e canFam3.chr16             17824937   4 -  59632846 I
e calJac3.chr3             190397870  29 - 190850796 I
e ponAbe2.chr4             197924424 3000 + 198332218 M

a score=538619.000000
s hg38.chr4_KI270925v1_alt    125693 344 +    555799 actagtactactactaataaactactagtaAAACGTGAGAGTTGTTTTTGCTGCTTTGGAAGTTGTTCCTTCTTAGCAAGCGGCAGCATTGTG---GAAGCAAATGCAGATAATTTGGGGAAGATGCTGCCGTTCAGCCTCCCCTGGCTCAGCCATCTTCCTACCACTGGGGGAGGAGATCCGTGCTGGCAAAAGCTGGATCACACTTGTGGTTAGTTGCCACTAACTAAATCAGGCTTGGAAATAAGATCGTTTGTCACCAGAATACTTTAAATTATCTTCCTCATGCTGGACTCTGTCCTTGCAAAACTGAGTGAATTCTCCATGTTTCGTCTTCTCACCATGGG
s panTro4.chr4             192819762 343 + 193495092 ACTAGTACTACTACTAATAAACTACTAGTAAAACGTGAGAGTTGTTTTTGCTGCTTTGGAAGTTGTTCCTTCTTAGCAAGCGGCAGCATTGTG---GAAGCAAATGCAGATAATTTGGGGAAGATGCTGCCGTTCAGCCTCCCCTGGCTCAGCCATCTTCCTACCACTGGGGGAGGAGATTCGTGCTGGCAAAAGCTGGATCACACTTGTGTTTAGTT-CCACTAACTAAATCAGGCTTGGAAATGAGATCGTTTGTCACCAGAATACTTTACATTATCTTCCTCATGCTGGACTCTGTCCTTGCAAAACTGAATGAATTCTCCATGTTTCGTCTTCTTACCATGGG
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113684542 337 + 115148730 ACTAG------TACTAGTAAACTACT-GTAAAACGTGAGAGTTGTTTTTGCTGCTTTGGAAGTTGTTCCTTCTTAGCAAGCAGCAACATCGTG---GAGGCGAATGCAGATAATTTGGGGAAGATGCAGCCGTTCAGCCTGCCCTGGCTCAGTCATCTTCCTACCACTGGGGGAGGAGATTTGTGCCGACAAAACCTGGATCACACTTGTGGTTAGTTGCCACTaactaaatcaggcttggaaataagatcatttgccaccagaatactttaaattatcttcctcgtgctggactctgtccttgcaaaactgaatgaattctccatgcttcctcttctcaccatggg
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183518702 297 + 184069350 ACTAGAACTACTACTAGTAAACTACTAGCAAAATGT--GAGTTGTGTTTGCTGCTTTGGAAGCGGTTCCCTCTTAGCAAGC-GCAGCATAGTG---GAAGCAAATGCGGATAATTTGGGGAGGATGCAGCTGTTCAGCCTCCCCCGGCTCAGCCATCTTCTTGCCACTGG--------------------------------------------ATTTGCCACTCACTAAATCAGACTTGGAAATAAGATCGTTTGTCACCGGAAAACTTTCAATTATCTTCCTCAGGCTGGACTCTGTTCTTGCAAAACTGAATGAATCATCCACGTTTTGTCTTCTCACCATGGG
i rheMac3.chr5             C 0 I 454
s macFas5.chr5             188901957 297 + 189454096 ACTAGAACTACTACTAGTAAACTACTAGCAAAATGT--GAGTTGTGTTTGCTGCTTTGGAAGCGGTTCCCTCTTAGCAAGC-GCAGCATAGTG---GAAGCAAATGCGGATAATTTGGGGAGGATGCAGCTGTTCAGCCTCCCCCGGCTCAGCCATCTTCTTGCCACTGG--------------------------------------------ATTTGCCACTCACTAAATCAGACTTGGAAATAAGATCGTTTGTCACCGGAAAACTTTCAATTATCTTCCTCAGGCTGGACTCTGTTCTTGCAAAACTGAATGAATCATCCACGTTTTGTCTTCTCACCATGGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178325434 342 + 178775436 ACTAGAACTACTACTAGTGAACTACTAGCAAAACGTGAGAGTTGTGTTTGCTGCTTTGGAAGCGGTTCCCTCTTAGCAAGC-GCAGCATCGTG---GAAGCAAATGCGGATAATTTGGGGAAGATGCAGCTGTTCAGCCTCCCCCGGCTCAGCCATCTTCTTACCACTGGGGGAGGAGATCTGTGCTGGCAAAACCC-GATCACACTTGTGGTTATTTGCCACTCACTAAATCAGACTTGGAAATAAGATCGTTTGTCACCGGAAGACTTTCAATTATCTTCCTCAGGCTGGACTCTGTCCTTGCAAAACTGAATGAATCATCCACGTTTCGTCTTCTCACCATGGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135266977 344 + 135778131 ACTAGAACTACTACTAGTAAAGTGCTAGCAAAACGTGAGAGTTGTGTTTGCTGCTTTGGAAGCGGTTCCTCCTTAGCAAGTGGCAGCATCGTG---GAAGCGAATGTGGATAATTTAGGGAAGATGCAATTGTTCAGCCTCCCGCGGCTCAGCCATCTTCCTACCACTGGGGGAGGAGATCTGTGCTGGCAAAACCCGGATCACACGTGTGGTTATTTGCCACTCACTAAATCAGATTTGGAAATAAGATCGTTTGTCACCGGAAGACTTTCAATTACCTTCCTCAGGCTGGACTCCGTTCTTGCAAAACTGAATGAATCACCCACGTTTCATCTTCTCACCGTGGG
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87519986 284 - 129401213 ACAAGCACTACTAGAACAAATTTATTAGTAACATGGAAACAGTACGGTGGCTGCCTCAGAGGCAGTGCCTGTTCTGAAACTGGCAGTATCCTGGGAGAAGAGAATG-AGAAAACTTTGTAAAGATACCTCCGT------------------------------------GAGGAAGAGATTTATACTGTCAAACCTGAAACAGCATTT---CTTATTAGTCACTGTCTAACTGCAGCTCAGAAATAAAACC---TGTCACCAAAGGAGTTTAAGTTATTTTC--------------------TGCAAAACTGAATTAATCCCCCATGACTCATCTTCTTAACCCAAA
i mm10.chr8                I 20 C 0
e canFam3.chr16             17824937   4 -  59632846 I
e calJac3.chr3             190397870  29 - 190850796 I
e ponAbe2.chr4             197924424 3000 + 198332218 M

a score=28643.000000
s hg38.chr4_KI270925v1_alt    126037 23 +    555799 GCCAGATGGTCTTATCCACTCTA
s panTro4.chr4             192820105 23 + 193495092 GCCAGATGATCTTATCCACTCTA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113684879 23 + 115148730 cccagatgatcttatccactcta
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188902254 23 + 189454096 CGCAGGTGATCTCATCCACGCTA
i macFas5.chr5             C 0 I 427
s papAnu2.chr5             178325776 23 + 178775436 CGCAGGTGATCTCATCCATGCTA
i papAnu2.chr5             C 0 I 427
s chlSab2.chr7             135267321 23 + 135778131 CCCAGGTGATCTCATCCACTCTA
i chlSab2.chr7             C 0 I 430
s mm10.chr8                 87520270 23 - 129401213 CCCAAATTACTTCATCTCCACTA
i mm10.chr8                C 0 C 0
e canFam3.chr16             17824937  4 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e rheMac3.chr5             183518999 454 + 184069350 I
e ponAbe2.chr4             197924424 3000 + 198332218 M

a score=2349.000000
s hg38.chr4_KI270925v1_alt    126060 6 +    555799 GTTCAT
s panTro4.chr4             192820128 6 + 193495092 GTTCAT
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113684902 6 + 115148730 gttcat
i nomLeu3.chr7b            C 0 C 0
s mm10.chr8                 87520293 6 - 129401213 TTTTAT
i mm10.chr8                C 0 I 6
e canFam3.chr16             17824937 4 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135267344 430 + 135778131 I
e papAnu2.chr5             178325799 427 + 178775436 I
e macFas5.chr5             188902277 427 + 189454096 I
e rheMac3.chr5             183518999 454 + 184069350 I
e ponAbe2.chr4             197924424 3000 + 198332218 M

a score=1146.000000
s hg38.chr4_KI270925v1_alt    126066 4 +    555799 GCTT
s panTro4.chr4             192820134 4 + 193495092 GCTT
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113684908 4 + 115148730 gctt
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87520299 6 - 129401213 I
e canFam3.chr16             17824937 4 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135267344 430 + 135778131 I
e papAnu2.chr5             178325799 427 + 178775436 I
e macFas5.chr5             188902277 427 + 189454096 I
e rheMac3.chr5             183518999 454 + 184069350 I
e ponAbe2.chr4             197924424 3000 + 198332218 M

a score=28430.000000
s hg38.chr4_KI270925v1_alt    126070 329 +    555799 TGGtgtctaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaagtaaactaaagagcttctgcactggaaaagaaactatcatcagagtgaacaggcaacttacagaatgggagaaaatttttgcaatctactcatctgacaaagggctaatatccagaatctacaaagaactcaaacaaatttacaagaaaaaaacaaacaaccctatcaaaatgtgggtgaaggatatgaacagacaattctcaaaagaagacatttatgcagccaaaagacacatgaaaaaatgctcaccatcactggccatcagagaa
s panTro4.chr4             192820138 324 + 193495092 AGGtgtctaaaacaccaaaagcaatggcaacaaaagccaaaaatgacaaatgggatctaattaaactaaagagcttctgcactagaaaagaaactatcatcagagtgaacaggcaacttacagaatgggagaaaatttttgcaatctactcatctgacaaagggctaatatccagaatctacaaagaactcaaacaaatttacaagaaaa----aaacaaccctatcaaaatgtgggtgaagggtatgaacagacaattctcaaaagaagacatttatacagccaaaaaacacatgaaaaaatgctcaccatcaCT-GCCATCAGAGAA
i panTro4.chr4             C 0 M 722
e mm10.chr8                 87520299   6 - 129401213 I
e canFam3.chr16             17824937   4 -  59632846 I
e calJac3.chr3             190397870  29 - 190850796 I
e chlSab2.chr7             135267344 430 + 135778131 I
e papAnu2.chr5             178325799 427 + 178775436 I
e macFas5.chr5             188902277 427 + 189454096 I
e rheMac3.chr5             183518999 454 + 184069350 I
e nomLeu3.chr7b            113684912   0 + 115148730 C
e ponAbe2.chr4             197924424 3000 + 198332218 M

a score=0.000000
s hg38.chr4_KI270925v1_alt    126399 495 +    555799 atgcaaatcaaaaccacaatgagataccatctcacaccaattagaatggcaatcattaaaaagtcaggaaacaacaggtgctggagaggatgtggagaaagaggaacacttttacactgttggtgggactgtaaactagttcagccactgtggaagtcagtgtggcgattcctcagggatccagaactagaaataccatttgacccagccatcccattactgggtatatacccaaaggattataaatcatgctgctataaagacacacgcacacatatgtttattgtggcactattcacaatagcaaagacttggaaccaacccaaaagtcccacaatgatagactggattaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaattgatgagttaatgtcctttgtagggatgtggatgaagctggaaaccatcattctcagcaaactatcgcaaggacaaaaaaacaaacaccacatg
e mm10.chr8                 87520299   6 - 129401213 I
e canFam3.chr16             17824937   4 -  59632846 I
e calJac3.chr3             190397870  29 - 190850796 I
e chlSab2.chr7             135267344 430 + 135778131 I
e papAnu2.chr5             178325799 427 + 178775436 I
e macFas5.chr5             188902277 427 + 189454096 I
e rheMac3.chr5             183518999 454 + 184069350 I
e nomLeu3.chr7b            113684912   0 + 115148730 C
e ponAbe2.chr4             197924424 3000 + 198332218 M
e panTro4.chr4             192820462 722 + 193495092 M

a score=396.000000
s hg38.chr4_KI270925v1_alt    126894 3 +    555799 ttc
s macFas5.chr5             188902704 3 + 189454096 ttg
i macFas5.chr5             I 427 C 0
s papAnu2.chr5             178326226 3 + 178775436 ttg
i papAnu2.chr5             I 427 C 0
e mm10.chr8                 87520299 6 - 129401213 I
e canFam3.chr16             17824937 4 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135267344 430 + 135778131 I
e rheMac3.chr5             183518999 454 + 184069350 I
e nomLeu3.chr7b            113684912 0 + 115148730 C
e ponAbe2.chr4             197924424 3000 + 198332218 M
e panTro4.chr4             192820462 722 + 193495092 M

a score=546.000000
s hg38.chr4_KI270925v1_alt    126897 1 +    555799 t
s macFas5.chr5             188902707 1 + 189454096 t
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178326229 1 + 178775436 t
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135267774 1 + 135778131 t
i chlSab2.chr7             I 430 C 0
e mm10.chr8                 87520299 6 - 129401213 I
e canFam3.chr16             17824937 4 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e rheMac3.chr5             183518999 454 + 184069350 I
e nomLeu3.chr7b            113684912 0 + 115148730 C
e ponAbe2.chr4             197924424 3000 + 198332218 M
e panTro4.chr4             192820462 722 + 193495092 M

a score=42496.000000
s hg38.chr4_KI270925v1_alt    126898 46 +    555799 cactcataggtgggaactgaacaatgagaacacttggacacaggaa
s rheMac3.chr5             183519453 46 + 184069350 cactcataggtgggaactgaacaatgggaacacttggacaccggaa
i rheMac3.chr5             I 454 C 0
s macFas5.chr5             188902708 46 + 189454096 cactcataggtgggaactgaacaatgggaacacttggacacaggaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178326230 46 + 178775436 cactcataggtgggaactgaacaatgggaacacttggacacaggaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135267775 46 + 135778131 cactcataggtgggaactgaacaatgggaacacttggacacaggaa
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87520299  6 - 129401213 I
e canFam3.chr16             17824937  4 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e nomLeu3.chr7b            113684912  0 + 115148730 C
e ponAbe2.chr4             197924424 3000 + 198332218 M
e panTro4.chr4             192820462 722 + 193495092 M

a score=195836.000000
s hg38.chr4_KI270925v1_alt    126944 166 +    555799 ggggaacatcacacaccagggcctgttgtagggtagggggaggggggagggatagcattaggagatatacctaatgtaaatgacgagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaaaaaaccagcacattgtgcacatgtaccctaaaac
s panTro4.chr4             192821191 166 + 193495092 ggggaacatctcgcgccagggcctgttgtagggtggggggaggggggagggatagcattaggagatatacctaatgtaaatgacgagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaaaaaaccagcacattgtgcacatgtaccctaaaat
i panTro4.chr4             M 722 C 0
s rheMac3.chr5             183519499 166 + 184069350 gggggtcatcacacaccggggcctgtcctggggtgaggggaggtaggagggattgcattaggagatatacctaatgtaaatgatgagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaacaaacctgcacattgtgcacatgtgccctagaac
i rheMac3.chr5             C 0 I 43
s macFas5.chr5             188902754 166 + 189454096 ggggatcatcacacaccggggcctgtcctggggtgaggggaggtaggagggattgcattaggagatatacctaatgtaaatgatgagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaacaaacctgcacattgtgcacatgtgccctagaac
i macFas5.chr5             C 0 I 30
s papAnu2.chr5             178326276 160 + 178775436 ggagatcatcacacaccggggccagTCCTGGGatgaggggaggtgggagggatagcattaggagatatacctaatgcacacca------acatggtgcagcacaccaacatggcacatgtatacatatgtaacaaacctgcatatggtgcacatgtgccctagaac
i papAnu2.chr5             C 0 I 30
s chlSab2.chr7             135267821 166 + 135778131 ggggatcatcacacaccggggcctgtcctggggtgaggggaggcgggagggattgcattaggagatgtacctaatgtaaacgatgagttaatgggtgtagcacaccaacatggcacatgtatacatatgtaacaaacctgcacatggtgcacatgtaccctagaac
i chlSab2.chr7             C 0 I 33
e mm10.chr8                 87520299   6 - 129401213 I
e canFam3.chr16             17824937   4 -  59632846 I
e calJac3.chr3             190397870  29 - 190850796 I
e nomLeu3.chr7b            113684912   0 + 115148730 C
e ponAbe2.chr4             197924424 3000 + 198332218 M

a score=7105.000000
s hg38.chr4_KI270925v1_alt    127110 15 +    555799 aaaacaaaacaaaac
s panTro4.chr4             192821357 14 + 193495092 aaaacaaaacaaaa-
i panTro4.chr4             C 0 C 0
s macFas5.chr5             188902950 14 + 189454096 AAATAAAAATGAAA-
i macFas5.chr5             I 30 I 1
s papAnu2.chr5             178326466 14 + 178775436 aaataaaaacgaaa-
i papAnu2.chr5             I 30 C 0
s chlSab2.chr7             135268020 14 + 135778131 aaataaaaatgaaa-
i chlSab2.chr7             I 33 C 0
e mm10.chr8                 87520299  6 - 129401213 I
e canFam3.chr16             17824937  4 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e rheMac3.chr5             183519665 43 + 184069350 I
e nomLeu3.chr7b            113684912  0 + 115148730 C
e ponAbe2.chr4             197924424 3000 + 198332218 M

a score=910.000000
s hg38.chr4_KI270925v1_alt    127125 1 +    555799 a
s rheMac3.chr5             183519708 1 + 184069350 a
i rheMac3.chr5             I 43 C 0
s macFas5.chr5             188902965 1 + 189454096 A
i macFas5.chr5             I 1 C 0
s papAnu2.chr5             178326480 1 + 178775436 a
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135268034 1 + 135778131 a
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87520299 6 - 129401213 I
e canFam3.chr16             17824937 4 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e nomLeu3.chr7b            113684912 0 + 115148730 C
e ponAbe2.chr4             197924424 3000 + 198332218 M
e panTro4.chr4             192821371 0 + 193495092 C

a score=1365.000000
s hg38.chr4_KI270925v1_alt    127126 1 +    555799 a
s nomLeu3.chr7b            113684912 1 + 115148730 a
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183519709 1 + 184069350 a
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188902966 1 + 189454096 A
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178326481 1 + 178775436 a
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135268035 1 + 135778131 a
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87520299 6 - 129401213 I
e canFam3.chr16             17824937 4 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e ponAbe2.chr4             197924424 3000 + 198332218 M
e panTro4.chr4             192821371 0 + 193495092 C

a score=524386.000000
s hg38.chr4_KI270925v1_alt    127127 303 +    555799 aaaaagaagccctcacttctttgaaactacagacccatttagtttgcAGAGTGTGCCGCCTTCTCGCTGC-------CAGGCAGGGCAGGGGTTTTCAGAATCTGAAGTCATTTCACTGCTT---------CTGGTTTGCCTCAGTAGTGAAGCATTCT--GGGAAGATGTTCACAGGGGACTGGAGG--------------CAGGTGGAGGGAACCAAACATACTCAAAACACGATCCATGCCTTCC--TCCAAGGCTGTCGCTTGAGGTACACTTTTAGGAAAGTAGGAACAGAAACCAGAGTCGCTGAAGA-ATGGA------TTCC---------------------------AAATGCTC--TAAGAT-----
s panTro4.chr4             192821371 297 + 193495092 ------aaaCCCTCACTTCTTTGAAACTACAGACCCATTTAGTTTGCAGAGTGTGCCGCCTTCTCGCTGC-------CAGGAAGGGCAGGGGTTTTCAGAATCTGAAGTCATTTCACTGCTT---------CTGGTTTGCCTCAGTAGTGAAGCATTCT--GGGAAGATGTTCACAGGGGACTGGAGG--------------CAGGTGGAGGGAACCAAACATACTCAAAACATGATCCATGGCTTCC--TCCAAGGCTGTGGCTTGAGGTACACTTTTAGGAAAGTAGGAACAGAAACCAGAGTCGCTGAAGA-ATGGA------TTCC---------------------------AAATGCTC--TAAGAT-----
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113684913 303 + 115148730 gaaaagaagccctcactgctctgaaaccacagacccatttagtttgcAGAGTGTGCTGCCTTCTCACTGC-------CAGGCAGGGCAGGGGTTTTCAGAATCTGAAGTCACTTCACTGCTT---------CCAGTTGGCCTCAGTGGCGAAGCATTCT--GGGAAGATGTTCATAGGGGACTGGAGG--------------CAGGTGGAGGAAACCAAACAAACTCAAAACATGATCCGTGGCTTCC--TTCAAGGCTGTGGCTTGAGGTACACTTTTAGATAAGTAGGAACAGAAACCAGAGTTGCTGAAGA-ATGGA------TTCC---------------------------AAATGCGC--TAAGAT-----
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183519710 303 + 184069350 aaaaaaaaGCCCTCACTTCTTTGAAACTACAGACCTCTTGAGTCTGCAGAGTGTGCTGCCTTCTCACTGC-------CAGGCAGGGCAGTGGTTTTCAGAATCCGAAGTCACTTCACTGCTT---------CCAGTTTGCCTCAGTGGTGAAGCATTCT--GGGAAGATGTTCACAGGGGATGGGAGG--------------CAGGTGAAGGGGATCAAACATACTCAAAACACAGCCCATGGCTTCC--TTCAAGGCTGTGGCTTGAGGTACACTTTTAGGAAAGTGAGAACAGAAACCAGAGTCCCTGAAGG-ATGGG------TTCC---------------------------AAATACTC--TAATAT-----
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188902967 303 + 189454096 AAAAAAAAGCCCTCACTTCTTTGAAACTACAGACCTCTTGAGTCTGCAGAGTGTGCTGCCTTCTCACTGC-------CAGGCAGGGCAGTGGTTTTCAGAATCCGAAGTCACTTCACTGCTT---------CCAGTTTGCCTCAGTGGTGAAGCATTCT--GGGAAGATGTTCACAGGGGATGGGAGG--------------CAGGTGAAGGGGATCAAACATACTCAAAACACAGCCCATGGCTTCC--TTCAAGGCTGTGGCTTGAGGTACACTTTTAGGAAAGTGAGAACAGAAACCAGAGTCCCTGAAGG-ATGGG------TTCC---------------------------AAATACTC--TAATAT-----
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178326482 303 + 178775436 aaaaagaagccctcACTCCTTTGAAACTACAGACCTCTTGAGTCTGCAGAGTGTGCTGCCTTCTCACTGC-------CAGCCAGGGCAGCGGTTTTCAGAATCGGAAGTCACTTCACTGCTT---------CCGGTTTGCCTCAGTGGTGAAGCATTCT--GGGAAGATGTTCACAGGGGatgggagg--------------caggtggaggggATCAAACATACTCAAAACATGACCCATGGCTTCC--TTCAAGGCTGTGGCTTGAGGTACACTTTTAGGAAAGTGAGAACAGAAACCAGAGTCCCCGAAGG-ATGGG------TTCC---------------------------AAATACTC--TAATAT-----
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135268036 304 + 135778131 aaaaagaaGCCCTCACTTCTTTGGAACTACAGACCTCTTGAGTTTGCAGAATGTGCTGCCTTCTCACTGC-------CAGGCAGGGCAGCGGTTTGCAGAACCGGAAGTCACTTCACTGCTT---------CCGGTTTGCCTCAGTGGTGAAGCATTCT--GGGAAGATGTTCACAGGGGATGGGAGG--------------CAGGTGGAGGGGATCAAACATACTCAAAACACGACCCATGGCTTCC--TTCAAGGCTGTGGCTTGAGGTACACTTTTAGGAAAGTGAGAACAGAAACCAGAGTCGCTGAAGG-ATGGG------TTCC---------------------------AAATACTC-TTAATAT-----
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87520305 357 - 129401213 AAAAAGAAACCCTCTGTTCCTT---------------TTTAGGTTTCAG-GTGTCCTGCCATGTCAGTGCTATGGGACAGGCATTGGAGTCCTTTGCCCAGTTTGTGTTTGCTAAATTTCTGATGACAAAACTAAGTCTCTCAAGGAGTGGAAGGTTCTTGGGGAATTCTTTTGTAGAGGAACAGAGGTGATAAAATTTTAACTGAGAAAGAAAAACAAACAAA--CAAAACCTGTTTTATCACTCCCCACGCAGGGCTGGGACATCAAGCATATTTT--AGAAATTGGGTACA-AAGCCAATTTCTTTGCTGGCATGGAAATCTCTTCCTCACCAATATATCTTTGCTGGCAAGGAAAATATTCCTTATGATGATTT
i mm10.chr8                I 6 C 0
e canFam3.chr16             17824937   4 -  59632846 I
e calJac3.chr3             190397870  29 - 190850796 I
e ponAbe2.chr4             197924424 3000 + 198332218 M

a score=1685788.000000
s hg38.chr4_KI270925v1_alt    127430 692 +    555799  
s panTro4.chr4             192821668 697 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197927431 693 + 198332218  
i ponAbe2.chr4             M 3000 C 0
s nomLeu3.chr7b            113685216 692 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183520013 703 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188903270 703 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178326785 703 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135268340 696 + 135778131  
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87520662 679 - 129401213  
i mm10.chr8                C 0 I 342
e canFam3.chr16             17824937   4 -  59632846 I
e calJac3.chr3             190397870  29 - 190850796 I

a score=10444.000000
s hg38.chr4_KI270925v1_alt    128122 4 +    555799 AACA
s panTro4.chr4             192822365 4 + 193495092 AACA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197928124 4 + 198332218 AACA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113685908 4 + 115148730 AACA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183520716 4 + 184069350 AACA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188903973 4 + 189454096 AACA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178327488 4 + 178775436 AACA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135269036 4 + 135778131 AACA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87521341 342 - 129401213 I
e canFam3.chr16             17824937 4 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I

a score=271057.000000
s hg38.chr4_KI270925v1_alt    128126 106 +    555799 ATGCTTTGCATTCACAAAAGTACCTC----TTTCAAAAACTCTACGTTACAAATA---TATTATTAATCTTTTGTGTTGTACAGGTAGCTCCTGCCTCCTGGCTGGGTGCAAA
s panTro4.chr4             192822369 106 + 193495092 ATGCTTTGCATTCACAAAAGTACCTC----TTTCAAAAACTCTACGTTAAAAATA---TATTATTAATCTTTTGTGTTGTACAGGTAGCTCCTGCCTCCTGGCTGGGTGCAAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197928128 105 + 198332218 ATGCTTTGCATTCACAAAAGTACCTC----TTTCAAAAACTCTACTTTACAAATA---TCTTATTAATCTTGTGTGTTGTACAGGTAGCTCCTGCCTCAT-GCTTGGTCCAAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113685912 109 + 115148730 ATGCTTTGCATTTACTAAAGTACCTC----TTTCAAAAACTCTACATTACAAATATCTTCTTATTAATCTTGTGTGTTGTACAGGTAGCTCCTGCCTCCTTACTGGGTCCAAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183520720 109 + 184069350 ATGCTTTGCATTCATGAAAGTACCTC----TTTCAAAACCTCTACATTACAAATATCTTCTTATTAATCTTGTGTGCTGTACAGGTAGCTCCTGCCTCCTTGCTGGGTCCAAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188903977 109 + 189454096 ATGCTTTGCATTCATGAAAGTACCTC----TTTCAAAACCTCTACATTACAAATATCTTCTTATTAATCTTGTGTGCTGTACAGGTAGCTCCTGCCTCCTTGCTGGGTCCAAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178327492 109 + 178775436 ATGCTTTGCATTCACGAAAGTACCTC----TTTGAAAACCTCTGCATTGCAAACATCTTCTTATTAATCTTGTGTGTTGTACAGGTAGCTCCTGCCTCCTTGCTGGGtccaaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135269040 109 + 135778131 ATGCTTTGCATTCACGAAAGTACCTC----TTTCAAAACCTCTACATTACAAATATCTTCTTATTAATCTTGTGTGTTGCACAGGTAGCTCCTTCCTCCTTGCTGGGTCCAAA
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87521683 113 - 129401213 ATTCTTCACAGTCACAGAAGCTTCTCTTTATTTCAAGAACTCCATGATACAAATATATTCTTATCAAACTTGTGTCTTGTCCAAACACTCCCCACCTCTTTCCTGGGCCCAGA
i mm10.chr8                I 342 C 0
e canFam3.chr16             17824937   4 -  59632846 I
e calJac3.chr3             190397870  29 - 190850796 I

a score=5096.000000
s hg38.chr4_KI270925v1_alt    128232 2 +    555799 AT
s panTro4.chr4             192822475 2 + 193495092 AT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197928233 2 + 198332218 AT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113686021 2 + 115148730 AT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183520829 2 + 184069350 AT
i rheMac3.chr5             C 0 I 41
s macFas5.chr5             188904086 2 + 189454096 AT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178327601 2 + 178775436 at
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135269149 2 + 135778131 AT
i chlSab2.chr7             C 0 I 86
e mm10.chr8                 87521796 0 - 129401213 C
e canFam3.chr16             17824937 4 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I

a score=-3952.000000
s hg38.chr4_KI270925v1_alt    128234 22 +    555799 GCGTTTCtttgtttgtttgttt
s panTro4.chr4             192822477 16 + 193495092 GCGtt------tttcttttctt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197928235  6 + 198332218 GTGtt----------------t
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113686023  8 + 115148730 GCGtt--------------ttt
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188904088 15 + 189454096 -------TTtatatatctatat
i macFas5.chr5             C 0 I 25
s papAnu2.chr5             178327603 15 + 178775436 -------tttatatatatatat
i papAnu2.chr5             C 0 I 22
e mm10.chr8                 87521796  0 - 129401213 C
e canFam3.chr16             17824937  4 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135269151 86 + 135778131 I
e rheMac3.chr5             183520831 41 + 184069350 I

a score=21284.000000
s hg38.chr4_KI270925v1_alt    128256 14 +    555799 gtttttgttttttt
s panTro4.chr4             192822493 14 + 193495092 tttttttttttttt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197928241 14 + 198332218 ttcttttttttttt
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113686031 14 + 115148730 tttttttttttttt
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183520872 14 + 184069350 Attttttttttttt
i rheMac3.chr5             I 41 C 0
s macFas5.chr5             188904128 14 + 189454096 tttttttttttttt
i macFas5.chr5             I 25 C 0
s papAnu2.chr5             178327640 14 + 178775436 actttttttttttt
i papAnu2.chr5             I 22 C 0
e mm10.chr8                 87521796  0 - 129401213 C
e canFam3.chr16             17824937  4 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135269151 86 + 135778131 I

a score=649796.000000
s hg38.chr4_KI270925v1_alt    128270 291 +    555799 gagatggagtcttgctgtctcacccaggctggagggcagtggcgtgatctcggcttactgcaacgtccaccttctggttttaaacgattctcctgcctcagcctcctgagtagctgtgactacaagcactcgccaccaggcctggctaatttttatatttttggtagagtcaggatttccccatgttcgccagactggtctcaatctcctgaccttaggtgacccaccttgctcagcctcccaacatgttgggattacaggcgtgagccactgtgcctggG-CAAAATGCAC
s panTro4.chr4             192822507 292 + 193495092 gagatggagtcttgctgtctcacccaggctggagggcagtggcgtgatctcagcttactgcaacgtccacctcctggttttaaacgattctcctgcctcagcctcctgagtagctgtgactacaagctctcgccaccaggcccagctaatttttatatttttggtagagtcgggatttccccattttggccagactggtctcaatctcctgaccttaggtgacccaccttcctcagcctcccaacatgttgggattacaggcgtgagccactgtgcctggGCCAAAATGCAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197928255 292 + 198332218 gagatggagtctcgctgtctcacccaggctggagggcagtggtgtgatctcggctcactgcaacgtccacctcctgggtttaaatgattctcctgcctcagcctcctgagtagctgtgactacaagcattcgccaccaggcctggctaatttttatatttttggtagagacgggacttccccatgttggccagactggtctcaatctcccgaccttacgtgatccaccttcctcagcctcccaacatgttgggattacaggagtgagccactgtgcctggGCCAAAATGCAC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113686045 292 + 115148730 gagatggagtctcactgtctcacccaggctggagggcagtggtgtgatcttggctcactgcaacgtccgcctcctgggtttaaacgattctcctgcctcagcctcctgagcaactgtgactacaggcacttgccaccacgcccggctaatttttgtatttttggtagagacgggatttccccaagttggccagactggtctcaatctcctgaccttaggtgacctaccttcctcagcctcccaacatgttgggattacaggtgtgagccactgtgcctggGCCAAAATGCAC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183520886 288 + 184069350 gagatggagtcttgctgtctcgctcaggatggagggaagtgacgcgatctcagctcactacaacgtctgcctcctgtgttt----gattctcccacctcagcctcctgaatagctgggactacaggcacttgccaccacgcccggctaatttttgtatttttggtagagacaggatttccccatgttggccaggctggtctccatctcctgacgttaggtgacccaccttcctcagcctcccaccatgctgggattacaggcacgagccactgtgcctggGCCCCCATGCAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188904142 288 + 189454096 gagatggagtcttgctgtctcgctcaggatggagggaagtgacgcgatctcagctcactacaacgtctgcctcctgggttt----gattctcccacctcagcctcctgaatagctgggaccacaggcacttgccaccacgcccggctaatttttgtatttttggtagagacaggatttccccatgttggccaggctggtctccatctcctgaccttaggtgacccaccttcctcagcctcccagcatgctgggattacaggcacgagccactgtgcctggGCCCCCATGCAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178327654 288 + 178775436 gagatggagtcttgctgtctcgcTCAGGATGGAgggaagtggcgcgatctcagctcactgcaacgtctgcctcctgggttt----gattctcccacctcagcctcctgaatagctgggactacaggcacttgccaccacgcccggctaatttttgtattttgggtagagacaggatttccccatgttggccaggctggtcttgatctcctgaccttaggtgacccaccttcctcagcctcccagcatgctgggatcacaggcatgagccactgtgcctgggccccCATGCAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135269237 288 + 135778131 GGgatggagtcttgctgtctcgcccaggctggagggaagtggcgcgatctcagctcactgcaacgtctgcctcctgggttt----gattctcccgcctcagcctcctgagtagctgggactacaggcacttgccaccatgcccggctaatttttgtatttgtggtagagatgggatttccccatgttggccaggctggcctccatctcctgaccttaggtgacccaccttcctcagcttcccagcatgctgggattacaggcatgagccactgtgcctggGCCCCCATGCAA
i chlSab2.chr7             I 86 C 0
e mm10.chr8                 87521796   0 - 129401213 C
e canFam3.chr16             17824937   4 -  59632846 I
e calJac3.chr3             190397870  29 - 190850796 I

a score=260143.000000
s hg38.chr4_KI270925v1_alt    128561 118 +    555799 ATTTGGACTGAATGAGGAAGCCCAAG-CCCTTTCTACTGTGTTTTCAATTTTGTTTTTCTACTCTCCT-CCCTCACCCTTCACTCTGCGGATCCCATCTAT-GCAGCGACTACTCCCATTC
s panTro4.chr4             192822799 118 + 193495092 ATTTGGACTGAATGAGGAAGTCCACG-CCCTTTCCACTGTGTTTTCAATTTTGTTTTTCTACTCTTCT-CCCTCACCCTTCCCTCTGCAGATCCCATCTAC-GCAGCGACTACTCCCATTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197928547 118 + 198332218 GTTTGGACTGAATGAGGAAGCCCAAG-CCCTTTCCACTGTGTTTTCAATTTTGTTTTTCAACTCTTCT-CTCTCATCCTTTCCTCTGCCGATCACATCTAT-GCGTCGATTACTCCCATTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113686337 118 + 115148730 ATTTGGACTGAATGAGGAAGCCCAAG-CCCTTTCTACCGTGTTTTCAATTTTGTTTTTCTACTCTTCT-CCCTCACCCTTCCCTCTGCAGATCCCTTCTAT-GCAGCGACTACTCCCATTC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183521174 121 + 184069350 ATCTGGACTGAATGAGGAAGCCCAAGCCCCTTTGCACTGTGTCTTCCATGTTGGTTTTCTACTCTTCTCCCCTCACCCCTCCCTCTGCGGATCCCATCTACTGCAGCGACTGTTCCCAGTC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188904430 121 + 189454096 ATCTGGACTGAATGAGGAAGCCCAAGCCCCTTTGCACTGTGTCTTCCATGTTGGTTTTCTACTCTTCTCCCCTCACCCCTCCCTCTGCGGATCCCATCTACTGCAGCGACTGTTCCCAGTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178327942 120 + 178775436 ATCTGGACTGAATGAGGAAGCCCAAGCCCCTTTGCACTGTGTTTTCCATGTTGtttttttACTCttctcccctcacccctccctctgCAGATCCCATCTAC-GCAGCGGCTGTTCCCAGTC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135269525 120 + 135778131 ATTTGGACTGAATGAGGAAGCCCAAGCCCCTTTCCACTGTGTTTTCCATGTTGTTTTTCTACTCTTCTCCCCTCACCCCTCCCTCTGCGGATCCCATCTAT-GCAGTGACTGTTTCCAGTC
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87521796 107 - 129401213 ATTTTGACTAGATGATAGAATTTGAA-CCCCTTGATGTGCATTTTCAATGTTTTTTTTTTCCTATTCT----------TATCTACTGTGGTTCTTATCTAC-ATGTGGG--ACTCCTATTC
i mm10.chr8                C 0 I 544
e canFam3.chr16             17824937   4 -  59632846 I
e calJac3.chr3             190397870  29 - 190850796 I

a score=35047.000000
s hg38.chr4_KI270925v1_alt    128679 16 +    555799 AACCTGCGTCTGCCCT
s panTro4.chr4             192822917 16 + 193495092 AACCTGCATCTGCACT
i panTro4.chr4             C 0 I 60
s ponAbe2.chr4             197928665 16 + 198332218 AACCTGTGTCTACACT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113686455 16 + 115148730 AACCTGCGTCTCCACT
i nomLeu3.chr7b            C 0 I 30
s rheMac3.chr5             183521295 16 + 184069350 AACCTGTGTCTCCACT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188904551 16 + 189454096 AACCTGTGTCTCCACT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178328062 16 + 178775436 AACCTGTGTCTCCACT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135269645 16 + 135778131 AACCTGTGTCTCCACT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87521903 544 - 129401213 I
e canFam3.chr16             17824937  4 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I

a score=10655.000000
s hg38.chr4_KI270925v1_alt    128695 16 +    555799 GCTGACCCTCGGTGGT
s panTro4.chr4             192822993 16 + 193495092 GCTGACCCTCGGTGGT
i panTro4.chr4             I 60 C 0
s ponAbe2.chr4             197928681 16 + 198332218 GCTGATGCTCACTGGT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113686501 16 + 115148730 GCTGACCCTCACCGGG
i nomLeu3.chr7b            I 30 C 0
s chlSab2.chr7             135269661 16 + 135778131 GCTGACCCTCACTGGT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87521903 544 - 129401213 I
e canFam3.chr16             17824937  4 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e papAnu2.chr5             178328078  0 + 178775436 C
e macFas5.chr5             188904567  0 + 189454096 C
e rheMac3.chr5             183521311  0 + 184069350 C

a score=8931.000000
s hg38.chr4_KI270925v1_alt    128711 18 +    555799 GTGGGTGGGCTGTGGCTG
s panTro4.chr4             192823009 18 + 193495092 GTAGGTGGGCTGTGGCTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197928697 18 + 198332218 GTAGGTGGGTTGTGATTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113686517 18 + 115148730 GTAGGTGGGCTGTGGCTG
i nomLeu3.chr7b            C 0 T 64
e mm10.chr8                 87521903 544 - 129401213 I
e canFam3.chr16             17824937  4 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135269677  0 + 135778131 C
e papAnu2.chr5             178328078  0 + 178775436 C
e macFas5.chr5             188904567  0 + 189454096 C
e rheMac3.chr5             183521311  0 + 184069350 C

a score=873.000000
s hg38.chr4_KI270925v1_alt    128729 3 +    555799 ACC
s panTro4.chr4             192823027 3 + 193495092 ACC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197928715 3 + 198332218 ACC
i ponAbe2.chr4             C 0 I 1206
e mm10.chr8                 87521903 544 - 129401213 I
e canFam3.chr16             17824937 4 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135269677 0 + 135778131 C
e papAnu2.chr5             178328078 0 + 178775436 C
e macFas5.chr5             188904567 0 + 189454096 C
e rheMac3.chr5             183521311 0 + 184069350 C
e nomLeu3.chr7b            113686535 64 + 115148730 T

a score=1975.000000
s hg38.chr4_KI270925v1_alt    128732 23 +    555799 CTCGGTGGTGTGGGTGGGCTGTG
s panTro4.chr4             192823030 23 + 193495092 CTTGGTGGTGTAGGTGGGCTGTG
i panTro4.chr4             C 0 C 0
e mm10.chr8                 87521903 544 - 129401213 I
e canFam3.chr16             17824937  4 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135269677  0 + 135778131 C
e papAnu2.chr5             178328078  0 + 178775436 C
e macFas5.chr5             188904567  0 + 189454096 C
e rheMac3.chr5             183521311  0 + 184069350 C
e nomLeu3.chr7b            113686535 64 + 115148730 T
e ponAbe2.chr4             197928718 1206 + 198332218 I

a score=13592.000000
s hg38.chr4_KI270925v1_alt    128755 60 +    555799 GCTGACCCTCACTGGTGTAGCTGGGCTGTGGCTGACCCTCACTGGTGTAGGTGGGCTGTG
s panTro4.chr4             192823053 60 + 193495092 GCTGACCCTCGGTGGTGTAGGTGGGCTGTGGCTGACCTTCAACGTGGTAGGTGGGCTGTG
i panTro4.chr4             C 0 T 180
s nomLeu3.chr7b            113686471 60 + 115148730 GCTGACCCTCACCGGGGTAGGTGAGCTGTGGCTGACCCTCACCGGGGTAGGTGGGCTGTG
i nomLeu3.chr7b            T 64 C 0
e mm10.chr8                 87521903 544 - 129401213 I
e canFam3.chr16             17824937  4 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135269677  0 + 135778131 C
e papAnu2.chr5             178328078  0 + 178775436 C
e macFas5.chr5             188904567  0 + 189454096 C
e rheMac3.chr5             183521311  0 + 184069350 C
e ponAbe2.chr4             197928718 1206 + 198332218 I

a score=7581.000000
s hg38.chr4_KI270925v1_alt    128815 30 +    555799 GCTGACCCTCGGTGGTGTAGGTGGGCTGTG
s panTro4.chr4             192822933 30 + 193495092 GCTGACCCTCACTGGTTTAGGTGGGCTGTG
i panTro4.chr4             T 180 C 0
s nomLeu3.chr7b            113686531 30 + 115148730 GCTGACCCTCAGTGGTGTAGGTGGGCTGTG
i nomLeu3.chr7b            C 0 T 90
e mm10.chr8                 87521903 544 - 129401213 I
e canFam3.chr16             17824937  4 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135269677  0 + 135778131 C
e papAnu2.chr5             178328078  0 + 178775436 C
e macFas5.chr5             188904567  0 + 189454096 C
e rheMac3.chr5             183521311  0 + 184069350 C
e ponAbe2.chr4             197928718 1206 + 198332218 I

a score=6705.000000
s hg38.chr4_KI270925v1_alt    128845 30 +    555799 GCTGACCCTCACCGGTGTGGGTGGGCTGTG
s panTro4.chr4             192822963 30 + 193495092 GCTGACCTTCAACGTGGTAGGTGGGCTGTG
i panTro4.chr4             C 0 T 60
s nomLeu3.chr7b            113686471 30 + 115148730 GCTGACCCTCACCGGGGTAGGTGAGCTGTG
i nomLeu3.chr7b            T 90 C 0
e mm10.chr8                 87521903 544 - 129401213 I
e canFam3.chr16             17824937  4 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135269677  0 + 135778131 C
e papAnu2.chr5             178328078  0 + 178775436 C
e macFas5.chr5             188904567  0 + 189454096 C
e rheMac3.chr5             183521311  0 + 184069350 C
e ponAbe2.chr4             197928718 1206 + 198332218 I

a score=13716.000000
s hg38.chr4_KI270925v1_alt    128875 60 +    555799 GCTGACCCTCACTGGTGTAGCTGGGCTGTGGCTGGCCCTCACTGGTGTAGGTGGGCTGTG
s panTro4.chr4             192822933 60 + 193495092 GCTGACCCTCACTGGTTTAGGTGGGCTGTGGCTGACCTTCAACGTGGTAGGTGGGCTGTG
i panTro4.chr4             T 60 T 60
s nomLeu3.chr7b            113686501 60 + 115148730 GCTGACCCTCACCGGGGTAGGTGGGCTGTGGCTGACCCTCAGTGGTGTAGGTGGGCTGTG
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87521903 544 - 129401213 I
e canFam3.chr16             17824937  4 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135269677  0 + 135778131 C
e papAnu2.chr5             178328078  0 + 178775436 C
e macFas5.chr5             188904567  0 + 189454096 C
e rheMac3.chr5             183521311  0 + 184069350 C
e ponAbe2.chr4             197928718 1206 + 198332218 I

a score=2517.000000
s hg38.chr4_KI270925v1_alt    128935 30 +    555799 GCTGACCCTCGGTGGTGTAGGTGGGCTGTG
s nomLeu3.chr7b            113686561 30 + 115148730 GCTGACCCTTGGTGATGTAGGTGGGTTGTG
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87521903 544 - 129401213 I
e canFam3.chr16             17824937  4 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135269677  0 + 135778131 C
e papAnu2.chr5             178328078  0 + 178775436 C
e macFas5.chr5             188904567  0 + 189454096 C
e rheMac3.chr5             183521311  0 + 184069350 C
e ponAbe2.chr4             197928718 1206 + 198332218 I
e panTro4.chr4             192822993 60 + 193495092 T

a score=7525.000000
s hg38.chr4_KI270925v1_alt    128965 30 +    555799 GCTGACCCTCACTGGTGTGGGTGGGCTGTG
s panTro4.chr4             192822933 30 + 193495092 GCTGACCCTCACTGGTTTAGGTGGGCTGTG
i panTro4.chr4             T 60 C 0
s nomLeu3.chr7b            113686591 30 + 115148730 GCTGACCCTCACCAGTGTAGGTGGGCTGTG
i nomLeu3.chr7b            C 0 T 150
e mm10.chr8                 87521903 544 - 129401213 I
e canFam3.chr16             17824937  4 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135269677  0 + 135778131 C
e papAnu2.chr5             178328078  0 + 178775436 C
e macFas5.chr5             188904567  0 + 189454096 C
e rheMac3.chr5             183521311  0 + 184069350 C
e ponAbe2.chr4             197928718 1206 + 198332218 I

a score=28016.000000
s hg38.chr4_KI270925v1_alt    128995 120 +    555799 GCTGGCCCTCACTGGTGTGGGTGGGCTGTGGCTCGCCCTCACTGGTGTGGGTGGGCTGTGGCTGACCCTCGGTGGTGTGGGTGGGCTGTGGCTGACCCTCGGTGGTGTGGGTGAGCTGTG
s panTro4.chr4             192822963 120 + 193495092 GCTGACCTTCAACGTGGTAGGTGGGCTGTGGCTGACCCTCGGTGGTGTAGGTGGGCTGTGGCTGACCCTTGGTGGTGTAGGTGGGCTGTGGCTGACCCTCGGTGGTGTAGGTGGGCTGTG
i panTro4.chr4             C 0 T 150
s nomLeu3.chr7b            113686471 120 + 115148730 GCTGACCCTCACCGGGGTAGGTGAGCTGTGGCTGACCCTCACCGGGGTAGGTGGGCTGTGGCTGACCCTCAGTGGTGTAGGTGGGCTGTGGCTGACCCTTGGTGATGTAGGTGGGTTGTG
i nomLeu3.chr7b            T 150 C 0
e mm10.chr8                 87521903 544 - 129401213 I
e canFam3.chr16             17824937   4 -  59632846 I
e calJac3.chr3             190397870  29 - 190850796 I
e chlSab2.chr7             135269677   0 + 135778131 C
e papAnu2.chr5             178328078   0 + 178775436 C
e macFas5.chr5             188904567   0 + 189454096 C
e rheMac3.chr5             183521311   0 + 184069350 C
e ponAbe2.chr4             197928718 1206 + 198332218 I

a score=13535.000000
s hg38.chr4_KI270925v1_alt    129115 60 +    555799 GCTGACCCTCACTGGTGTGGGTGGGCTGTGGCTGACCCTCGGTGGTGTAGCTGGGCTGTG
s panTro4.chr4             192822933 60 + 193495092 GCTGACCCTCACTGGTTTAGGTGGGCTGTGGCTGACCTTCAACGTGGTAGGTGGGCTGTG
i panTro4.chr4             T 150 T 60
s nomLeu3.chr7b            113686591 60 + 115148730 GCTGACCCTCACCAGTGTAGGTGGGCTGTGGCTGACCCTTGGTGATGTAGGTGGGCTGTG
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87521903 544 - 129401213 I
e canFam3.chr16             17824937  4 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135269677  0 + 135778131 C
e papAnu2.chr5             178328078  0 + 178775436 C
e macFas5.chr5             188904567  0 + 189454096 C
e rheMac3.chr5             183521311  0 + 184069350 C
e ponAbe2.chr4             197928718 1206 + 198332218 I

a score=20845.000000
s hg38.chr4_KI270925v1_alt    129175 90 +    555799 GCTGACCCTCACTGGTGTGGGTGGGCTGTGGCTGACCCTCGGTGGTATAGGTGGGCTGTGGCTGACCCTCGATGGTGTGGGTGGGCTGTG
s panTro4.chr4             192822933 90 + 193495092 GCTGACCCTCACTGGTTTAGGTGGGCTGTGGCTGACCTTCAACGTGGTAGGTGGGCTGTGGCTGACCCTCGGTGGTGTAGGTGGGCTGTG
i panTro4.chr4             T 60 C 0
s nomLeu3.chr7b            113686651 90 + 115148730 GCTGACCCTCACCAGTGTAGGTGGGCTGTGGCTAACCCTCCGTGGTGTAGGTGGGCTGTGGCTGACCCGTGGTGATGTAGGTGGGCTGTG
i nomLeu3.chr7b            C 0 T 270
e mm10.chr8                 87521903 544 - 129401213 I
e canFam3.chr16             17824937  4 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135269677  0 + 135778131 C
e papAnu2.chr5             178328078  0 + 178775436 C
e macFas5.chr5             188904567  0 + 189454096 C
e rheMac3.chr5             183521311  0 + 184069350 C
e ponAbe2.chr4             197928718 1206 + 198332218 I

a score=6381.000000
s hg38.chr4_KI270925v1_alt    129265 30 +    555799 GCTGACCCTCACTGGTGTAGCTGGGCTGTG
s panTro4.chr4             192823023 30 + 193495092 GCTGACCCTTGGTGGTGTAGGTGGGCTGTG
i panTro4.chr4             C 0 T 120
s nomLeu3.chr7b            113686471 30 + 115148730 GCTGACCCTCACCGGGGTAGGTGAGCTGTG
i nomLeu3.chr7b            T 270 C 0
e mm10.chr8                 87521903 544 - 129401213 I
e canFam3.chr16             17824937  4 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135269677  0 + 135778131 C
e papAnu2.chr5             178328078  0 + 178775436 C
e macFas5.chr5             188904567  0 + 189454096 C
e rheMac3.chr5             183521311  0 + 184069350 C
e ponAbe2.chr4             197928718 1206 + 198332218 I

a score=50555.000000
s hg38.chr4_KI270925v1_alt    129295 210 +    555799 GCTGACCCTCACTGGTGTGGGTGGGCTGTGGCTGACCCTCGGTGGTATAGGTGGGCTGTGGCTGACCCTCGATGGTGTGGGTGGGCTGTGGCTGACCCTCACTGGTGTGGGTGGGCTGTGGCTGACCCTCGGTGGTGTGGGTGGGCTGTGGCTGACCCTCACTGGTGTGGGTGGGCTGTGGCTGACCCTCGGTGGTATAGGTGGGCTGTG
s panTro4.chr4             192822933 210 + 193495092 GCTGACCCTCACTGGTTTAGGTGGGCTGTGGCTGACCTTCAACGTGGTAGGTGGGCTGTGGCTGACCCTCGGTGGTGTAGGTGGGCTGTGGCTGACCCTTGGTGGTGTAGGTGGGCTGTGGCTGACCCTCGGTGGTGTAGGTGGGCTGTGGCTGACCTTCAACGTGGTAGGTGGGCTGTGGCTGACCCTCGGTGGTGTAGGTGGGCTGTG
i panTro4.chr4             T 120 C 0
s nomLeu3.chr7b            113686501 210 + 115148730 GCTGACCCTCACCGGGGTAGGTGGGCTGTGGCTGACCCTCAGTGGTGTAGGTGGGCTGTGGCTGACCCTTGGTGATGTAGGTGGGTTGTGGCTGACCCTCACCAGTGTAGGTGGGCTGTGGCTGACCCTTGGTGATGTAGGTGGGCTGTGGCTGACCCTCACCAGTGTAGGTGGGCTGTGGCTAACCCTCCGTGGTGTAGGTGGGCTGTG
i nomLeu3.chr7b            C 0 T 240
e mm10.chr8                 87521903 544 - 129401213 I
e canFam3.chr16             17824937   4 -  59632846 I
e calJac3.chr3             190397870  29 - 190850796 I
e chlSab2.chr7             135269677   0 + 135778131 C
e papAnu2.chr5             178328078   0 + 178775436 C
e macFas5.chr5             188904567   0 + 189454096 C
e rheMac3.chr5             183521311   0 + 184069350 C
e ponAbe2.chr4             197928718 1206 + 198332218 I

a score=21707.000000
s hg38.chr4_KI270925v1_alt    129505 90 +    555799 GCTGACCCTCACTGGTGTAGGTGGGCTGTGGCTAGCCCTCACTGGTGTAGGTGGGCTGTGGCTGACCCTCACTGGTGTGGGTGGGCTGTG
s panTro4.chr4             192823143 90 + 193495092 GCTGACCCTCGGTGGTGTAGGTGGGCTGTGGCTGACCCTCGGTGGTGTAGGTGGGCTGTGGCTGACCCTCGGTGGTGTAGGTGGGCTGTG
i panTro4.chr4             C 0 T 300
s nomLeu3.chr7b            113686471 90 + 115148730 GCTGACCCTCACCGGGGTAGGTGAGCTGTGGCTGACCCTCACCGGGGTAGGTGGGCTGTGGCTGACCCTCAGTGGTGTAGGTGGGCTGTG
i nomLeu3.chr7b            T 240 C 0
e mm10.chr8                 87521903 544 - 129401213 I
e canFam3.chr16             17824937  4 -  59632846 I
e calJac3.chr3             190397870 29 - 190850796 I
e chlSab2.chr7             135269677  0 + 135778131 C
e papAnu2.chr5             178328078  0 + 178775436 C
e macFas5.chr5             188904567  0 + 189454096 C
e rheMac3.chr5             183521311  0 + 184069350 C
e ponAbe2.chr4             197928718 1206 + 198332218 I

a score=41216.000000
s hg38.chr4_KI270925v1_alt    129595 180 +    555799 GCTGACCCTCGGTGGTGTGGGTGGGCTGTGGCTGACCCTCACTGGTGTGGGTGGGCTGTGGCTGACCCTCGGTGGTGTGGGTGGGCTGTGGCTGACCCTCACTGGTGTGGGTGGGCTGTGGCTGACCCTCGGTGGTGTGGGTGGGCTGTGGCTGACCCTCACTGGTGTGGGTGGGCTGTG
s panTro4.chr4             192822933 180 + 193495092 GCTGACCCTCACTGGTTTAGGTGGGCTGTGGCTGACCTTCAACGTGGTAGGTGGGCTGTGGCTGACCCTCGGTGGTGTAGGTGGGCTGTGGCTGACCCTTGGTGGTGTAGGTGGGCTGTGGCTGACCCTCGGTGGTGTAGGTGGGCTGTGGCTGACCTTCAACGTGGTAGGTGGGCTGTG
i panTro4.chr4             T 300 C 0
s nomLeu3.chr7b            113686561 180 + 115148730 GCTGACCCTTGGTGATGTAGGTGGGTTGTGGCTGACCCTCACCAGTGTAGGTGGGCTGTGGCTGACCCTTGGTGATGTAGGTGGGCTGTGGCTGACCCTCACCAGTGTAGGTGGGCTGTGGCTAACCCTCCGTGGTGTAGGTGGGCTGTGGCTGACCCGTGGTGATGTAGGTGGGCTGTG
i nomLeu3.chr7b            C 0 T 270
e mm10.chr8                 87521903 544 - 129401213 I
e canFam3.chr16             17824937   4 -  59632846 I
e calJac3.chr3             190397870  29 - 190850796 I
e chlSab2.chr7             135269677   0 + 135778131 C
e papAnu2.chr5             178328078   0 + 178775436 C
e macFas5.chr5             188904567   0 + 189454096 C
e rheMac3.chr5             183521311   0 + 184069350 C
e ponAbe2.chr4             197928718 1206 + 198332218 I

a score=92261.000000
s hg38.chr4_KI270925v1_alt    129775 390 +    555799 GCTGACCCTCGGTGGTGTGGGTGGGCTGTGGCTGACCCTCACTGGTGTAGGTGGGCTGTGGCTGACCCTCGGTGGTATAGGTGGGCTGTGGCTGACCCTCACTGGTGTAGGTGGGCTGTGGCTAGCCCTCACTGGTGTAGGTGGGCTGTGGCTGACCCTCACTGGTGTGGGTGGGCTGTGGCTGACCCTCGGTGGTGTGGGTGGGCTGTGGCTGACCCTCACTGGTGTGGGTGGGCTGTGGCTGACCCTCGGTGGTGTGGGTGGGCTGTGGCTCACCCTCACTGGTGTGGGTGGGCTGTGGCTGACCCTCACTGGTGTGGGTGGGCTGTGGCTGACCCTCGGTGGTGTGGGTGGGCTGTGGCTGACCCTCGGTGTTGTAGGTGGGCTGTG
s panTro4.chr4             192823113 390 + 193495092 GCTGACCCTCGGTGGTGTAGGTGGGCTGTGGCTGACCCTCGGTGGTGTAGGTGGGCTGTGGCTGACCCTCGGTGGTGTAGGTGGGCTGTGGCTGACCCTCGGTGGTGTAGGTGGGCTGTGGCTGACCCTCGGTGGTGTAGGTGGGCTGTGGCTGACCCTCACTGGTGTAGGTGGGCTGTGGCTGACCCTCACCGGTGTAGGTGGGCTGTGGCTGACCTTCAACGTGGTAGGTGGGTTGTGGCTGACCCTCGGTGGTGTAGGTGGGCTGTGGCTGACCCTCGGTGGTGTAGGTGGGCTGTGGCTGACCCTCGGTGATGTAGGTGGGCTGTGGCTGACCCTCGGTGGTGTAGGTGGGCTGTGGCTGACCCTCGGTAGTGTAGGTGGACTGTG
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113686471 390 + 115148730 GCTGACCCTCACCGGGGTAGGTGAGCTGTGGCTGACCCTCACCGGGGTAGGTGGGCTGTGGCTGACCCTCAGTGGTGTAGGTGGGCTGTGGCTGACCCTTGGTGATGTAGGTGGGTTGTGGCTGACCCTCACCAGTGTAGGTGGGCTGTGGCTGACCCTTGGTGATGTAGGTGGGCTGTGGCTGACCCTCACCAGTGTAGGTGGGCTGTGGCTAACCCTCCGTGGTGTAGGTGGGCTGTGGCTGACCCGTGGTGATGTAGGTGGGCTGTGGCTGACCCTCACCAGTGTAGGTGGGCTGTGGCTAACCCTCCGTGGTGTAGGTGGGCTGTGGCTGACCCTTGGTGATGTAGGTGGGCTGTGGCTGACACTCACTGGGGTAGGTGGGCTGTG
i nomLeu3.chr7b            T 270 C 0
e mm10.chr8                 87521903 544 - 129401213 I
e canFam3.chr16             17824937   4 -  59632846 I
e calJac3.chr3             190397870  29 - 190850796 I
e chlSab2.chr7             135269677   0 + 135778131 C
e papAnu2.chr5             178328078   0 + 178775436 C
e macFas5.chr5             188904567   0 + 189454096 C
e rheMac3.chr5             183521311   0 + 184069350 C
e ponAbe2.chr4             197928718 1206 + 198332218 I

a score=24166.000000
s hg38.chr4_KI270925v1_alt    130165 16 +    555799 GCTGACCCTCACCCGG
s panTro4.chr4             192823503 16 + 193495092 GCTGACCCTCACCAGG
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113686861 16 + 115148730 GCTGACCCCCACTGGT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183521311 16 + 184069350 GCTGACCCTCACCGGT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188904567 16 + 189454096 GCTGACCCTCACCGGT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178328078 16 + 178775436 GCTGACCCTCACCTGT
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190397899 16 - 190850796 GCTGGCCCTCACCGCT
i calJac3.chr3             I 29 C 0
e mm10.chr8                 87521903 544 - 129401213 I
e canFam3.chr16             17824937  4 -  59632846 I
e chlSab2.chr7             135269677  0 + 135778131 C
e ponAbe2.chr4             197928718 1206 + 198332218 I

a score=5348.000000
s hg38.chr4_KI270925v1_alt    130181 2 +    555799 GT
s panTro4.chr4             192823519 2 + 193495092 GT
i panTro4.chr4             C 0 I 241
s nomLeu3.chr7b            113686877 2 + 115148730 GT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183521327 2 + 184069350 GT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188904583 2 + 189454096 GT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178328094 2 + 178775436 GT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135269677 2 + 135778131 GT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190397915 2 - 190850796 GT
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87521903 544 - 129401213 I
e canFam3.chr16             17824937 4 -  59632846 I
e ponAbe2.chr4             197928718 1206 + 198332218 I

a score=455679.000000
s hg38.chr4_KI270925v1_alt    130183 222 +    555799 AGGTGGGCTGTGGTGATTAGAGCTAATGAGAGGATTGAGGAGACCGACATTCACTTCCAATTGCAGTTCCAAATTAACACCTTCTGCAGATACACATTCCAGAAATCTCATGCCCTGTACTTTCTTCTACACCGTTTTCTCTCCCCTTTGTTTCCATTCCAGCCATGCAGGAAGCAGCGTCTGTCCTGGCACATTGCGACATG-TTGTCCATACCCGCTTGTT
s panTro4.chr4             192823762 222 + 193495092 AGGTGGGCTGTGGTGATTAGAGCTAATGAGAGGTTTGAGGAGACCGACATTCACTTCCAATTGCAGTGCCAAATTAACACCTTCTGCAGATACACATTCCAGAAATCTCATGCCCTGTACTTTATTCTACACCATTTTCTCTCCCCTTTGTTTCCATTCCAGCCATGCAGGAAGCAGCGTCTGTCCTGGCACATTGCGACATG-TTGTCCATACCCGCTTGTT
i panTro4.chr4             I 241 C 0
s nomLeu3.chr7b            113686879 218 + 115148730 AGGTGGGCTGTGGTGATTAGAGCTAATGAGAGGTTTGGGGAGACTGACATTCACCTCCAACTGCAGTGCCAAATTAACACCTCCTGCAGATACGCATTCCAGAAATCTCA----CTGTACTTTCTTCTACGTCATTTTCTCTCCCCTTAGTTTCCGTTGCAGCCATGCAGGAAGTAGCGTCTGTCCTGGCACATCACGACATG-TTGTCCATACCTGCTTGTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183521329 222 + 184069350 AGGTGGGCTGTGGTGATTAGAGCTAATGAGAAGTTTGGGAAGACTGACATTCACTTCCGATTTCAGTGCCAAATTAATGTCTCCTGCAGATACACACTCCAGAAATCTCAGGCCCTGAACTTTCTTCCACATCATTTTCTCTCCCCTTTGTTTCCATTCCAGCCATGCAGGAAGCAGGGTCTGCCCTGGCACACCGCGACATG-CTGTCCACGCCTGCTCGTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188904585 222 + 189454096 AGGTGGGCTGTGGTGATTAGAGCTAATGAGAAGTTTGGGAAGACTGACATTCACTTCCGATTTCAGTGCCAAATTAATGTCTCCTGCAGATACACACTCCAGAAATCTCAGGCCCTGAACTTTCTTCCACATCATTTTCTCTCCCCTTTGTTTCCATTCCAGCCATGCAGGAAGCAGGGTCTGCCCTGGCACACCGCGACATG-CTGTCCACGCCTGCTCGTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178328096 222 + 178775436 AGGTGGGCTGTGGTGATTAGAGCTAATGAGAGGTTTGGGAAGACTGACATTCACTTCCGATTTCAGTGCCAAATTAATGTCTCCTGCAGATACACACTCCAGAAATCTCACGCCCTGAACTTTCTTCCACATCATTTTCTCTCCCCTTTGTTTCCATTCCAGCCATGCAGGAAGCAGGGTCTGCCCTGGCACACCGTGGCGTG-TTGTCCACGCCTGCTTGTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135269679 222 + 135778131 AGGTGGTCTGTGGTGATTAGAGCTAATGAGAGGTTTGGGAAGACTGACATTCACTTCCGATTTCAGTGCCAAATTAATGTCTCCTGCAGATACACACTCCAGAAATCTCACGCCCTGTACTTTCTTCCACATCATTTTCTCTCCCCTTTGTTTCCATTCCAGCCACGCAGGAAGCAGAGTCTGCCCTGGCACATCGCGACATG-TTGTCCACACCTGCTTGTT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190397917 212 - 190850796 ACATGGGCTGGAGGGACTGGAGCCAATAAGAGGTTCTGGAAGACTGACTTTCACCTCCAACTGCAGTGCCAGATTAACCCGTGGTGCAAGCATGCCTTCGGGAAGTCTCA-----CGTACTTTCCTGCA---CGTTTTCTCTCCCTCGTGTTTCCACTGCAGCCATGCAGGAAGCAGCGTCTGTCCCGGCACACCGTGACATTCTTGTCCAT---TGCTTGGT
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87521903 544 - 129401213 I
e canFam3.chr16             17824937   4 -  59632846 I
e ponAbe2.chr4             197928718 1206 + 198332218 I

a score=13737.000000
s hg38.chr4_KI270925v1_alt    130405 5 +    555799 CTTCC
s panTro4.chr4             192823984 5 + 193495092 CTTCC
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113687097 5 + 115148730 CCTCC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183521551 5 + 184069350 CCTCC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188904807 5 + 189454096 CCTCC
i macFas5.chr5             C 0 I 437
s papAnu2.chr5             178328318 5 + 178775436 CCTCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135269901 5 + 135778131 CCTCC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190398129 5 - 190850796 CCTCC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17824941 5 -  59632846 ccttt
i canFam3.chr16            I 4 C 0
e mm10.chr8                 87521903 544 - 129401213 I
e ponAbe2.chr4             197928718 1206 + 198332218 I

a score=37180.000000
s hg38.chr4_KI270925v1_alt    130410 12 +    555799 CTGCCTGTGTTC
s panTro4.chr4             192823989 12 + 193495092 ATGCCTGTGTTC
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113687102 12 + 115148730 CTGCCTGTGTTC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183521556 12 + 184069350 CTGCCTGTGTTC
i rheMac3.chr5             C 0 I 567
s macFas5.chr5             188905249 12 + 189454096 CTGCCTGTGTTC
i macFas5.chr5             I 437 C 0
s papAnu2.chr5             178328323 12 + 178775436 CTGCCTGTGTTC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135269906 12 + 135778131 CTGCCTGTGTTC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190398134 12 - 190850796 CTGCCTGTGTTC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17824946 12 -  59632846 ctgcctgttctc
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87521903 544 - 129401213 I
e ponAbe2.chr4             197928718 1206 + 198332218 I

a score=58147.000000
s hg38.chr4_KI270925v1_alt    130422 51 +    555799 TGGTAACACTGTGTTCACTGTT----------GAACTCTTCTAGGTATGCTTTCCCCCCAC-
s panTro4.chr4             192824001 51 + 193495092 TGAGAACACTGTGTTCACTGTT----------GAACTCTTCTAGGTATGCTTTCCCCCCAC-
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113687114 51 + 115148730 TGGGAACACTGTGTTCACTGTT----------GAACTCTTCTAGGTATGCTTTTCCCCCAC-
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188905261 51 + 189454096 CGGGAGGCTCCTGTGCACCGTT----------AAACTCTTCTAGGTAGGCTGTTCCCGCCC-
i macFas5.chr5             C 0 I 1
s papAnu2.chr5             178328335 51 + 178775436 CGGGAAGCTCCTGTGCACCGTT----------AAACTCTTCTAGGTACGCTGTTCCGGACT-
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135269918 51 + 135778131 TGGGAAGCTCCTGTGCACTGTT----------AAACTCTTCTAGGTGTGCTTTTCCGCCTT-
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190398146 50 - 190850796 TGGGAAGGTCTTGTTCACTG-T----------AAACTCTTCCCTGGGTGCTTTGCCTGCCC-
i calJac3.chr3             C 0 I 1
s canFam3.chr16             17824958 62 -  59632846 tgaagagctcctctccactgttctaaaaagtccagctcctctacctatgctaccccagcccc
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87521903 544 - 129401213 I
e rheMac3.chr5             183521568 567 + 184069350 I
e ponAbe2.chr4             197928718 1206 + 198332218 I

a score=1084754.000000
s hg38.chr4_KI270925v1_alt    130473 485 +    555799  
s panTro4.chr4             192824052 485 + 193495092  
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113687165 483 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183522135 483 + 184069350  
i rheMac3.chr5             I 567 C 0
s macFas5.chr5             188905313 483 + 189454096  
i macFas5.chr5             I 1 C 0
s papAnu2.chr5             178328386 484 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135269969 479 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190398197 476 - 190850796  
i calJac3.chr3             I 1 C 0
s canFam3.chr16             17825020 598 -  59632846  
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87521903 544 - 129401213 I
e ponAbe2.chr4             197928718 1206 + 198332218 I

a score=1734989.000000
s hg38.chr4_KI270925v1_alt    130958 598 +    555799  
s panTro4.chr4             192824537 598 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197929924 604 + 198332218  
i ponAbe2.chr4             I 1206 C 0
s nomLeu3.chr7b            113687648 592 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183522618 592 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188905796 592 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178328870 592 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135270448 593 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190398673 609 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17825618 581 -  59632846  
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87521903 544 - 129401213 I

a score=5563176.000000
s hg38.chr4_KI270925v1_alt    131556 1463 +    555799  
s panTro4.chr4             192825135 1467 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197930528 1479 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113688240 1476 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183523210 1474 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188906388 1474 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178329462 1474 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135271041 1475 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190399282 1451 - 190850796  
i calJac3.chr3             C 0 I 3323
s mm10.chr8                 87522447 1452 - 129401213  
i mm10.chr8                I 544 C 0
s canFam3.chr16             17826199 1477 -  59632846  
i canFam3.chr16            C 0 C 0

a score=1999361.000000
s hg38.chr4_KI270925v1_alt    133019 705 +    555799  
s panTro4.chr4             192826602 703 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197932007 714 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113689716 715 + 115148730  
i nomLeu3.chr7b            C 0 I 3
s rheMac3.chr5             183524684 707 + 184069350  
i rheMac3.chr5             C 0 I 8
s macFas5.chr5             188907862 706 + 189454096  
i macFas5.chr5             C 0 I 8
s papAnu2.chr5             178330936 714 + 178775436  
i papAnu2.chr5             C 0 I 8
s chlSab2.chr7             135272516 711 + 135778131  
i chlSab2.chr7             C 0 I 3
s mm10.chr8                 87523899 774 - 129401213  
i mm10.chr8                C 0 C 0
s canFam3.chr16             17827676 700 -  59632846  
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190400733 3323 - 190850796 I

a score=168612.000000
s hg38.chr4_KI270925v1_alt    133724 75 +    555799 CTTTTTGCCATAAA-ACTCACATTTACATGAAAGTATACTGTAAAACAGAAATATAAGAT--CT-----TTCCCCTTGGAAAT
s panTro4.chr4             192827305 75 + 193495092 CTTTTTGCCATAAA-ACTCACATTTACATGAAAGTATACTATAAAACAGAAATATAAGAT--TT-----TTCCCCTTGGAAAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197932721 75 + 198332218 TTTTTTCCCATAAA-ACTCACATTTACATGAAAGTATACTGTAAAACAGAAATATAAGAT--TT-----TTCCCCTTGCAAAT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183525399 75 + 184069350 TTTTTGGCCATAAA-ACTCACATTTACATAAAAGTATACTGTAAAACATAAATATAAGAT--TT-----TTCCCCTTGGAAAT
i rheMac3.chr5             I 8 C 0
s macFas5.chr5             188908576 75 + 189454096 TTTTTGGCCATAAA-ACTCACATTTACATAAAAGTATACTGTAAAACATAAATATAAGAT--TT-----TTCCCCTTGGAAAT
i macFas5.chr5             I 8 C 0
s papAnu2.chr5             178331658 75 + 178775436 tttttggccataaa-ACTCACATTTACATAAAAGTatactgtaaaatataaatataagat--tt-----TTCCCCTTGGAAAT
i papAnu2.chr5             I 8 C 0
s chlSab2.chr7             135273230 75 + 135778131 TTTTTGGCCATAAA-ACTCACATTTACATAAAAGTATACTGTAAAACAGAAATATAAGAT--TT-----TTCCCCCTGAAAAT
i chlSab2.chr7             I 3 C 0
s mm10.chr8                 87524673 74 - 129401213 --ttttgacatata-attcacactcatgtgaaagtgtaatat-aaatgtaaatgtactatGATT-----TTGAAAATGCAAAT
i mm10.chr8                C 0 C 0
s canFam3.chr16             17828376 81 -  59632846 tattttgaCATAAGCACTCACATTCACATGAAAATACAATGTAAAACATAAATAcagtag--ttgtctcttacccatggggat
i canFam3.chr16            C 0 I 451
e calJac3.chr3             190400733 3323 - 190850796 I
e nomLeu3.chr7b            113690431  3 + 115148730 I

a score=226582.000000
s hg38.chr4_KI270925v1_alt    133799 128 +    555799 A-------ATAGAAATCTGAATAT----GCAC-----ATGCTCCTTACACTGCTGTGGGAATCAGGCCTTGCTGTTACTGGATGACGATAATAATAATAACTTGTGAAAGCCTCCAA------------GTGGA--AAGAAGAGAGACTAATTCC---------------------------------TGT
s panTro4.chr4             192827380 161 + 193495092 A-------ATAGAAATCTGAATAT----GCAC-----ATGCTCCTTACACTGCTGTGGGAATCAGGCCTTGCTGTTACTGGATGACGATAATAATAATAATTTGTGAAAGCCTCCAG------------GTGGA--AAGAAGAGAGACTAATTCCTGTGCCAGCCTAGACGTGCGGCCAGCCTAGACGTGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197932796 128 + 198332218 A-------ATAGAAATCTGAATAT----GCAC-----ATGCTCCTTACACTGCTGTGGGAATCAGGCCTTGCTGTTACTGGATGACGATAATAATAATAACTTGTGAAAGCCTCCAG------------GTGGA--AAGAAGAGAGATTAATTCC---------------------------------TGT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183525474 127 + 184069350 A-------ATAGAAATCTGAATGT----GCAC-----ATGCTCCTTACACAGCTACGGGAATCAGGTTTTGCTGTTACTGGATGATAATAATAATAATAACTTGTGAAAGCC-CCAC------------GTGGA--AAGAAGAGAGACTCATTCC---------------------------------TGT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188908651 127 + 189454096 A-------ATAGAAATCTGAATGT----GCAC-----ATGCTCCTTACACGGCTACGGGAATCAGGCTTTGCTGTTACTGGatgataataataataataaCTTGTGAAAGCC-CCAC------------GTGGA--AAGAAGAGAGACTCATTCC---------------------------------TGT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178331733 121 + 178775436 A-------ATAGAAATCTGAATAT----GCAC-----ATGCTCCTTACACGGCTACGGGAATCAGGCTTTGCTGTTACTGGATG------ATAATAATAACTTGTGAAAGCC-CCAC------------GTGGA--AAGAAGAGAGACTCATTCC---------------------------------TGT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135273305 127 + 135778131 A-------ATAGAAATCTGAATAT----GCAC-----ATGCTCCTTACACAGCTACGGGAATCAGGCTTTGCTGTAACTAGatgataataataataataaCTTGTGAAAGCC-CCAC------------GTGGA--AAGAAGAGAGACTCATTCC---------------------------------TGT
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87524747 143 - 129401213 ATATCAACATAGAATATTATAAAT--------------TGTCATTCACATTAGTTTCAGGATCATATTGTCCTCTTATCTGGTAATAATCAT-ATAAGAACTTTTGAAAAATCTCAATAGTGTGTATGTGTGGAGGAGGGGGGGTGATTAACTGA---------------------------------TGT
i mm10.chr8                C 0 C 0
s canFam3.chr16             17828908 130 -  59632846 A-------ACAAAAATCTCAGTATCAAAACACTGATTGTGTCACTCATCCCAGCATATGGATCAGACTTCCTTCTCACT------TAATAATAGTAATAGCTTGTGAAAACCTTCAT------------GGGCA--AAGAGGAGA-ACTAACTCA---------------------------------TGT
i canFam3.chr16            I 451 C 0
e calJac3.chr3             190400733 3323 - 190850796 I
e nomLeu3.chr7b            113690431   3 + 115148730 I

a score=9450.000000
s hg38.chr4_KI270925v1_alt    133927 4 +    555799 GCCA
s panTro4.chr4             192827541 4 + 193495092 GCCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197932924 4 + 198332218 GCCA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183525601 4 + 184069350 GCCA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188908778 4 + 189454096 GCCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178331854 4 + 178775436 GCCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135273432 4 + 135778131 GCCA
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87524890 4 - 129401213 GACA
i mm10.chr8                C 0 I 142
e canFam3.chr16             17829038 0 -  59632846 C
e calJac3.chr3             190400733 3323 - 190850796 I
e nomLeu3.chr7b            113690431 3 + 115148730 I

a score=4809.000000
s hg38.chr4_KI270925v1_alt    133931 27 +    555799 GCCTAGATGTGT-CCCAGCCTAGACGCG
s panTro4.chr4             192827545 27 + 193495092 GCCTAGATGTGT-GCCAGCCTAGACGTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197932928 28 + 198332218 GCCTAGACTTGCGGCCAGCCTAGACATA
i ponAbe2.chr4             C 0 C 0
e mm10.chr8                 87524894 142 - 129401213 I
e canFam3.chr16             17829038  0 -  59632846 C
e calJac3.chr3             190400733 3323 - 190850796 I
e chlSab2.chr7             135273436  0 + 135778131 C
e papAnu2.chr5             178331858  0 + 178775436 C
e macFas5.chr5             188908782  0 + 189454096 C
e rheMac3.chr5             183525605  0 + 184069350 C
e nomLeu3.chr7b            113690431  3 + 115148730 I

a score=12860.000000
s hg38.chr4_KI270925v1_alt    133958 181 +    555799 TGGCCAGCCTAGATGCGTGGCCAGCCTAGACGTGTGCAAGCTTAGACATGTGCAAGCCTAGACGCATGGTCAGCCTAGACGTGTGCCAGCCTAGACGTGTGCCCAGCCTAGATGTGTGCAAGCCTAGATGCGTGGCCAGCCTAGATGTGTGCCAGCCTAGACGTGTGCAAGCCGAGATGTG
s panTro4.chr4             192827572 178 + 193495092 T-GCCAGCCTAGATGCGTGGCCAGCCTAGAGGTGTGCCAGCCTAGACGTGTGCCAGCCTAGATGCGTGGCCAGCCTAGAGGTGTGCCAGCCTAGACGTGTG-CCAGCCTAGACATGTGCCAGCCTAGACGTGT-GCCAGCCTAGACGTGTGCCAGCCTAGACGTGTGCCAGCCTAGGCGTG
i panTro4.chr4             C 0 C 0
e mm10.chr8                 87524894 142 - 129401213 I
e canFam3.chr16             17829038   0 -  59632846 C
e calJac3.chr3             190400733 3323 - 190850796 I
e chlSab2.chr7             135273436   0 + 135778131 C
e papAnu2.chr5             178331858   0 + 178775436 C
e macFas5.chr5             188908782   0 + 189454096 C
e rheMac3.chr5             183525605   0 + 184069350 C
e nomLeu3.chr7b            113690431   3 + 115148730 I
e ponAbe2.chr4             197932956   0 + 198332218 C

a score=74164.000000
s hg38.chr4_KI270925v1_alt    134139 526 +    555799  
s panTro4.chr4             192827750 599 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197932956 360 + 198332218  
i ponAbe2.chr4             C 0 C 0
e mm10.chr8                 87524894 142 - 129401213 I
e canFam3.chr16             17829038   0 -  59632846 C
e calJac3.chr3             190400733 3323 - 190850796 I
e chlSab2.chr7             135273436   0 + 135778131 C
e papAnu2.chr5             178331858   0 + 178775436 C
e macFas5.chr5             188908782   0 + 189454096 C
e rheMac3.chr5             183525605   0 + 184069350 C
e nomLeu3.chr7b            113690431   3 + 115148730 I

a score=15901.000000
s hg38.chr4_KI270925v1_alt    134665 215 +    555799 TGCCAGCCTAGACTTGTGGCCAGCCTAGACGTGTGCAAGCCTAGACGTGTGGCCAGCCTAGATGTGTGCCAGCCTAGACGTGCGGCCAGCCTAGACGTGTGCAAGCCTACACGCGTGGCCAGCCTAGATGTATGCCAGCCTAGACTTGTGGCCAGCCTAGACGTGT-GCCAGCCTAGATGTGTGGCCAGCCTAGACGCGTGGTCAGCCTAGACGCA
s panTro4.chr4             192828349 213 + 193495092 TGCCAGCCTAGACGTGTGGCCAGCCTAGACGTGTGCAAGCCTAGACGCGTGGCCAGCCTAGATGTGTGCCAGCCTAGACGTGCGGCCAGCCTAGATGTGTGCCACCCTAGACGTGT-GCAAGCCGAGATGTGTGCAAGCCTAGACGTGT-GCCAGCCTAGACGTGCGGCCAGCCTAGACATGT-GCCAGCCTAGACGCGTGGCCAGCCTAGACGCG
i panTro4.chr4             C 0 C 0
e mm10.chr8                 87524894 142 - 129401213 I
e canFam3.chr16             17829038   0 -  59632846 C
e calJac3.chr3             190400733 3323 - 190850796 I
e chlSab2.chr7             135273436   0 + 135778131 C
e papAnu2.chr5             178331858   0 + 178775436 C
e macFas5.chr5             188908782   0 + 189454096 C
e rheMac3.chr5             183525605   0 + 184069350 C
e nomLeu3.chr7b            113690431   3 + 115148730 I
e ponAbe2.chr4             197933316   0 + 198332218 C

a score=7426.000000
s hg38.chr4_KI270925v1_alt    134880 36 +    555799 TGGCCGGCCTAGATGTGTGCCCAGCCTAGACTTGTG
s panTro4.chr4             192828562 36 + 193495092 TGGCCGGCCTAGATGTGTGCCCAGCCTAGACTTGTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197933316 30 + 198332218 TGGCCAGCCTAGA------CCCAGCCTAGACATGTG
i ponAbe2.chr4             C 0 C 0
e mm10.chr8                 87524894 142 - 129401213 I
e canFam3.chr16             17829038  0 -  59632846 C
e calJac3.chr3             190400733 3323 - 190850796 I
e chlSab2.chr7             135273436  0 + 135778131 C
e papAnu2.chr5             178331858  0 + 178775436 C
e macFas5.chr5             188908782  0 + 189454096 C
e rheMac3.chr5             183525605  0 + 184069350 C
e nomLeu3.chr7b            113690431  3 + 115148730 I

a score=1474.000000
s hg38.chr4_KI270925v1_alt    134916 4 +    555799 GCCG
s panTro4.chr4             192828598 4 + 193495092 GCCG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197933346 4 + 198332218 GCCA
i ponAbe2.chr4             C 0 C 0
s canFam3.chr16             17829038 4 -  59632846 GCTA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87524894 142 - 129401213 I
e calJac3.chr3             190400733 3323 - 190850796 I
e chlSab2.chr7             135273436 0 + 135778131 C
e papAnu2.chr5             178331858 0 + 178775436 C
e macFas5.chr5             188908782 0 + 189454096 C
e rheMac3.chr5             183525605 0 + 184069350 C
e nomLeu3.chr7b            113690431 3 + 115148730 I

a score=237731.000000
s hg38.chr4_KI270925v1_alt    134920 131 +    555799 GCCTAGATGTGTGCACTTGGCTTGTGTTCCGGTCAGAAAGTCCCTGGCTGGAGCTTGTGCCGGTTCCTGGTCCTGGAACCAGGTGATTGCTGCTCTGCTGCTCTGCCACAAGAAGGAGGATGTCCGTCGTA--------------------------
s panTro4.chr4             192828602 131 + 193495092 GCCTAGACATGTGCACTTGGCTTGTGTTCCGGTCAGAAAGTCCCTGGCTGGAGCTTGTGCCGGTTCCTGGTCCTGGAACCGGGTGATTGCTGCTCTGCTGCTCTGCCACAAGAAGGGGGATGTCCGTCGTA--------------------------
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197933350 123 + 198332218 GCCTAGACGTGTGCACTTGGCTTGTGTTCCGGTCAGAAAGTCCCTGGCTGGAGCTTGTGCTGGTTCCTGGTTCTGGAACCAGGTGAT--------TGCGGCTCTGCCACCAGAAGGAGGATGTCCATCGTA--------------------------
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183525605 123 + 184069350 GCCTAGACGTGGGCACTTGGCTTGCGTTCTGGTCAGAAAGTCCCTGGCTGGAGCTTGTGCTGGTTTGTGGTCCTGGAACCAGGTGGT--------TGCTGCTGTGCGACAAGGAGGAGGACATCCCTCATA--------------------------
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188908782 123 + 189454096 GCCTAGACGTGGGCACTTGGCTTGTGTTCTGGTCAGAAAGTCCCTGGCTGGAGCTTGTGCTGGTTTGTGGTCCTGGAACCAGGTGGT--------TGCTGCTGTGCGACAAGGAGGAGGACATCCCTCGTA--------------------------
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178331858 123 + 178775436 GCCTAGATGTGTGCACTTGGCTTGCGTTCTGGTCAGAAAGTCCCTGGCTGGAGCTTGTGCTGGTTTGTGGTCCTGGAACCAGGTGGT--------TGCTGCTGTGCGACAAGGAGGAGGACGTCCCTCGTA--------------------------
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135273436 123 + 135778131 GCCTAGACGTGTGCACTTGGCTTGTGTTCTGGTCAGAAAGTCCCTGGCTGGAACTTGTGCTGGTTTGTGGTCCTGGAACCAGGTGGT--------TGCTGCTGTGCGACAAGGAGGAGGACGTCCCTCGTA--------------------------
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17829042 147 -  59632846 GCCCAGATATAGGCACTTGACTTTTGTTCTGGCCAGAGAGTCCCTGGCAAGAGCTTATGTTGCTCCCTGAGCCTGGAGCCAGGTTAC--------TGCTGC--TGATATAAAAATGAAGAATCTTCCTGTGGTGGCTGCACATAACATTCCTTCAGG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87524894 142 - 129401213 I
e calJac3.chr3             190400733 3323 - 190850796 I
e nomLeu3.chr7b            113690431   3 + 115148730 I

a score=238820.000000
s hg38.chr4_KI270925v1_alt    135051 120 +    555799 AACTGCACCTG-ATGCCT--------------GGGCCATGCACCTCTCTCAGTCCTCAGCAGGGTTTTT-TGTCGATT-------CTAAAGTCCACAATGCCACAGGACATTCTTAATGTCcacatatgtagtgcccagaagt
s panTro4.chr4             192828733 120 + 193495092 AACTGCACCTG-ATGCCT--------------GGGCCATGCACCTCTCTCAGTCCTCACCAGGGTGTTT-TGTCAATT-------CTAAAGTCCACAATGCCACAGGACATTCTTAATGTCcacatatgtagtgcccagaagt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197933473 120 + 198332218 AACTGCACCTG-ATGCCT--------------GGGGAATGCTCCTCTCTCTGTCCTCACCAGGGTTTTT-TGTCAATT-------CTAAAGCCCACAAGGCCACAGGACATTCTTAATGTCCATATATGTAGTGcccagaagt
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183525728 120 + 184069350 AACTGCACCTG-ACGCCT--------------GGGCCACGCACCTCTCTCCACCCTCACCAGGGTTTTT-TGTTGATT-------CTAAAGTCCACAATGCCACAGGACATTCTCCATGTCCATATATGTAGTGCCTGGAAGC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188908905 120 + 189454096 AACTGCACCTG-ACGCCT--------------GGGCCACGCACCTCTCTCCACCCTCACCAGGGTTTTT-TGTTGATT-------CTAAAGTCCACAATGCCACAGGACATTCTCCATGTCCATATATGTAGTGCCCGGAAGC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178331981 112 + 178775436 AACTGCACCTG-ACACCT--------------GCACCACGCACCTCTCTCCACCCTCACCAGGGTTTTT-TGTCGATT-------CTAAAGT--------CCACAGGACGTTCTCCATGTCCATATATGTAGTGCCCAGAAGC
i papAnu2.chr5             C 0 I 152
s chlSab2.chr7             135273559 120 + 135778131 AACTGCACCTG-ATGCCT--------------GGGCCACGCACCTCTCTCCATCCTCACCAGGGTTTTT-TGTCGATT-------CTAAAGTCCACAATGCCACAGGACATTCTCCGTGTCCATATATGCAGTGCCCAGACGC
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87525036 110 - 129401213 AACAGCATCTATGTATCT--------------ATGCCATAGTCATTTTTC--CTCTACCCATGGATTTT-TGTTAAAG-------CTAAAGAATAGGATGCACTAGGACA---------TCAGAATATGTGGTCCCCAGAAAC
i mm10.chr8                I 142 C 0
s canFam3.chr16             17829189 142 -  59632846 AACGATACCTG-GTGGCTCTCACCTGTTAGTAATGCCATATACTTCTTCCATTCCTCAACAGGGTTTTTGCATTGACTAAATGCACTAAAGTGCAAGATGctacaggactctctcaacatcaatatatgtggaacccagaagt
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190400733 3323 - 190850796 I
e nomLeu3.chr7b            113690431   3 + 115148730 I

a score=68199.000000
s hg38.chr4_KI270925v1_alt    135171 33 +    555799 ggaaggggtgtgacacctcatgg-gtgaaatctg
s panTro4.chr4             192828853 33 + 193495092 ggaaggggtgtgacacctcatgg-gtgaaatctg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197933593 33 + 198332218 ggaaggggtgtggcacctcatgg-gtgaaatctg
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183525848 33 + 184069350 GGAAGGGGTGTGGCGTCCCACGG-GTGAAGTCTG
i rheMac3.chr5             C 0 I 353
s macFas5.chr5             188909025 33 + 189454096 GGAAGGGGTGTGGCGTCCCACGG-GTGAAGTCTG
i macFas5.chr5             C 0 I 391
s papAnu2.chr5             178332245 33 + 178775436 GGAAGGGGTGTGGCACCCCACGG-GTGAAGTCTG
i papAnu2.chr5             I 152 C 0
s chlSab2.chr7             135273679 33 + 135778131 GGAAGGGGTGTGGCACCCCACGG-GTGAAGTCTG
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87525146 33 - 129401213 GAAAGGGAGATGGATCTTGTGAG-GTGAAACTTG
i mm10.chr8                C 0 C 0
s canFam3.chr16             17829331 34 -  59632846 gtgaggaagatgatgctctatggagcgacatttg
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190400733 3323 - 190850796 I
e nomLeu3.chr7b            113690431  3 + 115148730 I

a score=241863.000000
s hg38.chr4_KI270925v1_alt    135204 115 +    555799 accaagggaagacagttactagcagataaattgtggtgctttccattctctggatgggctgtttggaggagcagcaccttctggtggcttctctagtgacattcagagggacact
s panTro4.chr4             192828886 115 + 193495092 accaagggaaggcagttactagcagataaattgtggtgctttccattctctggatgggctgtctggaggagcagcaccttctggtggcttctctagtgacattcagaggcacact
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197933626 115 + 198332218 accaagggaagacagttactagcagataaattgtggtgctttccattctctggatgggctgtttggaggagcagcaccttctggtggcttctctagtgacattcggagggacacc
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183526234 115 + 184069350 ACCAAGGGAAGACAGTTACTAGCAGATAAATTGTGACACTTCCCATTCTCTGGACGGGCTGTTTGGAGCAGCAGTACCTTCTGCTGGCTTCTCTAGTGACGCTCTGAGGGACATC
i rheMac3.chr5             I 353 C 0
s macFas5.chr5             188909449 115 + 189454096 ACCAAGGGAAGACAGTTACTAGCAGATAAATTGTGACACTTCCCATTCTCTGGACGGGCTGTTTGGAGCAGCAGTACCTTCTGCTGGCTTCTCTAGTGACGCTCTGAGGGACATC
i macFas5.chr5             I 391 C 0
s papAnu2.chr5             178332278 115 + 178775436 ACTGAGGGAAGACAGTTACTAGCAGATAAACTGTGATACTTTCCATTCTCTGGATGGGCTGTTTGGAGCAGCAGTGCCTTCTGGTGGCTTCTCTAGTGACGCTCTGAAGGACATC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135273712 115 + 135778131 ACCAAGAGAAGACAGTTACTAGCAGATAAATTGTGATACTTTCCATTCTCTGGATGGGCTGTTTGGAGCAGCAGTACCTTCTGGTGGCTTCTCTAGTGACGTTCTGAGGGACACC
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87525179 115 - 129401213 GCATATGGAAGGCAATTAGTCCCAGCCTAATTCTAGTGCTACCCACTCCTTGGTTGAGCTATTTGGTCGGGCACAAACATCTAATGCTCTTTATGATGATATTTGTGAGGCTAGT
i mm10.chr8                C 0 C 0
s canFam3.chr16             17829365 111 -  59632846 accaatgcaatacaa-tactactgggtaaatc-tggtagctttcattccctggatgacatgtttggagaagc-gtgccttctcatg-cttctctgttgatattctgtgggttgta
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190400733 3323 - 190850796 I
e nomLeu3.chr7b            113690431   3 + 115148730 I

a score=246444.000000
s hg38.chr4_KI270925v1_alt    135319 101 +    555799 gctgtgaccagctcagtgacactccctttg-acttgctgtccctccttccctgcctcact--ttgtccctcacttgtgtgt---ctgagctgcactcatcctcaggc--------------------------------------------------------------------------------------------
s panTro4.chr4             192829001  99 + 193495092 gctgtgaccagctcagtgacactccctttg-atttgctgtccctccttccctgcctcact--ttgtccctcact--tgtgt---ttgagctgcactcatcctcaggc--------------------------------------------------------------------------------------------
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197933741 101 + 198332218 gctgtgaccagctcagtgacactccctttg-atttgctgtccctccctccctgcctcact--ttgtccctcactTGTGTGT---TTGAGCTGCACTCATCCTCAGGC--------------------------------------------------------------------------------------------
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113690434 101 + 115148730 gctgtgaccagctcagtgacactccctttg-atttgctgcccccccttccctgcctcact--ttgtccctcacttgtgtgt---ttgagctgcactcatcctcaggc--------------------------------------------------------------------------------------------
i nomLeu3.chr7b            I 3 C 0
s rheMac3.chr5             183526349  99 + 184069350 ACTgtgaccagctcagtgacactccctttg-actcactgcccctccttccctgcct--ct--ttgtccctcacttgtgtgc---ttgagctgcactcatcatcaggc--------------------------------------------------------------------------------------------
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188909564  99 + 189454096 ACTgtgaccagctcagtgacactccctttg-actcgctgcccctccttccctgcct--ct--ttgtccctcacttgtgtgc---ttgagctgcactcatcatcaggc--------------------------------------------------------------------------------------------
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178332393  99 + 178775436 GCTGTGACCAGCTCAGTGACACTCCCTTTG-ACTTGCtgcccctccttccctgcct--ct--ttgTCCCTCACTTGTGTGT---TTGAGCTGCACTCATCATCCGGC--------------------------------------------------------------------------------------------
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135273827  99 + 135778131 gctgtgaccagctcagtgacactccctttg-atttgctgcccctccttccctgcct--ct--ttgtccctcgcttgtgtgt---ttgagctgcgctcatcatcaggc--------------------------------------------------------------------------------------------
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87525294 101 - 129401213 -TAAAGACCAAGTCAGCAGCGATACATTTGCATTTGCAGCTCCTGCTTGCCCACTTCACT--CCTCTCCTTTCCCCTCAGC---TTAGGCTCCATTCATAATAAAAT--------------------------------------------------------------------------------------------
i mm10.chr8                C 0 C 0
s canFam3.chr16             17829476 198 -  59632846 gctgtgatcatcccagtaacaacccctttgcaatttcagtctctcctt-cctgcctcactcactttccttcacttttacattccttagattacactcattataaagtagcttctttttttttaagattttatttattcatgtgagtgagagagagagagagagagattggccaagacacaagcagagagagaagcaggc
i canFam3.chr16            C 0 I 105
e calJac3.chr3             190400733 3323 - 190850796 I

a score=1117479.000000
s hg38.chr4_KI270925v1_alt    135420 446 +    555799 gtagcccctcc---tatttccctcgagcagggtt---ttctaggg-acacaggtagagacaGTGCCAAACTAG-AATAAG-------CAAAAGATCAATGACGGACTAAAGGCCCAGTTTAAAATAGAAATTACGA-GTGGATATTCAG----TCAGCAAA---ACATGATTTTCCTCCAGCATTGTAGGAACAGCCGCAGAGGAAAC--GGAGTTAGACTCATCTACTCACTTAACAATCCGGGGTCCCCTG-TGTGTCCCTCACCAGACTAGTCATCAGGGATTCCAAGAT-AT-AAAAA-AA--------------TAACCC-TTGGGTTCCAGTCAGTCCTTCTTTAGGGATTAACATTATACACTGGAATTTCATGTCTAAATATCTCC--ATGCAGTTGAAGTAGTGTTTCTGAAGAGTATAAAGGGCAAAAAATAATATGTGAGA----AGATGAG-------GAAAAAG---CTGAAGGTACAGATAACATCAGAGAA
s panTro4.chr4             192829100 436 + 193495092 gtagcccctcc---tatttccctcgagcagggtt---ttctaggg-acacaggtagagacaGTGCCAAATTAG-AATAAG-------CAAAAGATCAATGACGGACTAAAGGCCCAGTTTAAAATAGAAATTACGA-ATGGATATTCAG----TCAGCGAA---ACATGATTTTCCTCCAGCATTGTAGGAACAGCCGCAGAGGAAAC--GGAGTTAGACTCATCTACTCACTTAACAATCCGGGGTCCCCTG-TGTGTCCCTCACCAGACTAGTCATCAGGGATTCCAAGAT-AT-AAAAA-AA--------------TAACCC-TTGGGTT----------ATTTTTTAGGGATTAACATTATACACTGGAATTTCATGTCTAAATATCTCC--ATGCAGTTGAAGTAGTGTTTCTGAAGAGTATAAAGGGCAAAAAATAATACGTGAGA----AGATGAG-------GAAAAAG---CTGAAGGTACAGATAACATCAGAGAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197933842 441 + 198332218 GTAGCCCCTCC---TATTTCCCTTGAGCAGGGTT---TTCTAGGG-ACACAGACAGAGACAGTGCCAAACTGG-AATAAG-------CAAAAGATCAATGACGGACTAAAGGCCCAGTTTAAAATAGAAATTGCAA-ATGGATATTCAG----TCAGCAAAACGACATGATTTTCCTCCAGCATTGTAGGAACAGCCGCAGAGGAAACAGGGAGTTAGACTCATCTACTCACTTAACAATCCGGGGTCCCCTG-TGTGTCCCTCACCAGACTAGTCATCAGGGATTCCAAGAT-AT-AAAAA-AA--------------AAACC-------------TCAGTCCTTCTTTAGGGATTAACATTATACACTGGAATTTCATGTCTAAATATCTCCAGATGCAGTTGCAGTAGTGTTTCTGAAGAGTATAAAGGGCAAAAAATAATACGTGAGA----AGATGAG-------GAAAAAG---CTGAAGGTACAGATAAGATCAGAGAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113690535 458 + 115148730 gtagcccctcc---tatttccctcgagcagggtt---ttctagggaacacaggcagagacaGTGCCAAACTGG-AATAAG-------CAAAAGATCAATGATGGACTAAAGGCCCAGTTTAAAATAGAAATTACAA-ATGAATGTTCAGTCATTCAGCGTAACGACATGGTTTTCCTCCAGCATCGTAGGAACAGCCGCAGAGAAAACAGGGAGTTAGACTCATCCGCTCCCTTAACAATCTGGGGTCCCCTG-TGTGTCCCCCACCAGACTAGTCATCAGGGATTCCAAGAG-GTAAAAAA-AA--------------TAACCC-TTGGGTTCCAGTCAGTCCTTCTTTAGGGATTAACATTATACACTGGAATTTCATGTCTAAATACCTCCAGATGCAGTTGAAGTAGTGTTTCTGAAGAGTATAAAGAGCAAAAAATAATATGTGAGA----AGACGAA-------GAAAAAG---CTGAA-GTACAGATGAGATCAGAGAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183526448 456 + 184069350 atagcacctcc---tatttccctcgagca-ggtt---ttctagggaacacaggcagagacaGCGCCAAACTGG-AATAAG-------CAAAAGATCAGTGATGGACTAAAGGCCCAGTTTAAAATAGAAATTGTAA-ATGGATATTCAGTCAGTCAGTGAAACGACGTGATTTTCCTCCAGCACCATAGGAACAGCAGAGGAGAAAACAGGGAGTTGGGCTCATTTACTCATTTAGCAAACCGGGGGTCCCTG-TGTGTCCATCACTAGAGTAGTCGTCAGGGACCCCAAGAC-AT-AAAAA-AA--------------TAACC--TTCGGGTCCCGTCAGTCCCTCTTTAGGGATTAACATTATACACTGGAATTTCATGTCTAACTGTCTCCAGAGGCAGTTGAAGTAGTATTTCTGAAGAATATAAAGGGCAGAAAATAATACGTGAGA----AGACGAG-------GAAAAAG---CTGAAGGTAGAGATGAGATAAGAGAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188909663 456 + 189454096 atagcacctcc---tatttcccttgagca-ggtt---ttctagggaacacaggcagagacaGCGCCAAACTGG-AATAAG-------CAAAAGATCAGTGATGGACTAAAGGCCCAGTTTAAAATAGAAATTGTAA-ATGGATATTCAGTCAGTCAGTGAAACGACGTGATTTTCCTCCAGCACCGTAGGAACAGCAGAGGAGAAAACAGGGAGTTGGGCTCATTTACTCATTTAGCAAACCGGGGGTCCCTG-TGTGTCCATCACTAGAGTAGTCGTCAGGGACCCCAAGAC-AT-AAAAA-AA--------------TAACC--TTCGGGTCCCGTCAGTCCCTCTTTAGGGATTAACATTATACACTGGAATTTCATGTCTAACTGTCTCCAGAGGCAGTTGAAGTAGTATTTCTGAAGAATATAAAGGGCAGAAAATAATACGTGAGA----AGACGAG-------GAAAAAG---CTGAAGGTAGAGATGAGATAAGAGAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178332492 452 + 178775436 ATAGCACCTCC---TATTTCCCTTGAGCA-GGTT---TTCTAGGGAACACAGGCAGAGACAGTGCTAAACTGG-AATAAG-------CAAAAGATCAGTGATGGACTAAAGGCccagtttaaaatagaaattgtaa-ATGGAT----AGTCAGTCAGCGAAACGACGTGATTTTCCTCCAGCACCGTAGGAACAGCAGAGGAGAAAACAGGGAGTTGGGCTCATTTACTCATTTAGCAAACCGGGGGTCCCTG-TGTGTCCATCGCTAGAGTAGTCATCAGGGACTCCAAGAC-AT-aaaaa-aa--------------TAACC--TTCGGTTCCCATCAGTCCCTCTTTAGGGATTAACATTATACACTGGAATTTCATGTCTAACTGTCTCCAGAGGCAGTTGAAGTAGTATTTCTGAAGAGTGTAAAGGGCAGAAAATAATACGTGAGA----AGACGAG-------GAAAAAG---CTGAAGGTAGAGGTGAGATAAGAGaa
i papAnu2.chr5             C 0 I 875
s chlSab2.chr7             135273926 457 + 135778131 atagcacctcc---tatttccctcaagca-ggtt---ttctagggaacacaggcagagacaGCACCAAACTGG-AATAAG-------CAAAAGATCAGTGATGGACTAAAGGCCCAGTTTAAAATAGAAATTGTAA-ATGGATATTCAGTCAGTCAGCGAAACGACGTGATTTTCCTCCAGCACCGTAGGAACAGCAGAGGAGAAAACAGGGAGTTTGGCTCATTTACTCATTTAACAAACCAGGGTTCCCTG-TGTGTCCATCACTAGAGTAGTCATCAGGGACTCCAAGACAAA-AAAAA-AA--------------TAACC--TTCGGTTCCCGTCGGTTCCTCTTTAGGGAATAACATTATACACCGGAATTTCATGTCTAACTATCTCCAGAGGCAGCTGAAGTAGTATTTCTGAAGAGTATAAAGGGCAGAAAATAATACGTGAGA----AGACGAG-------GGAAAAG---CTGAAGGTAGAGATGAGATAAGAGAA
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87525395 434 - 129401213 ATAGCATCTACATGGAATTCTGT-------GATTTTCTTCTAAGGAATCCTAGGGGAGACAACATCCAATAAGAAATAAG-------CATACAAGTAGTGACCAACTAAGGGATGAATGGAAGATAAAAATTACAA-ATACATATTTAG-----------AATTACATATTTTT----CAGTATCCCAAAGACAAAGTAGAGAGTAGCGGTATGTCAAGTTCATTTCCTAACTTAACAGCTTGAGTTTTATAGACACACTCATCACTGGACTAGACATTAAGGATCCTCATAT-AT-AAAACTAA--------------CAATCCACCAGGCTCTAGCTGGTCCTTCCTGA-------------------GGAATTCCAAGTTGAAGCAATACAAAATGCATATGAGAAGGTATTTGTGAAGAGTAGGGAGAAAAGTAAGTAATACAATAGAACTTAAATTAG-------GATAAAGGAACTGAAGATCTAGATGTGGTCAAAGTA
i mm10.chr8                C 0 C 0
s canFam3.chr16             17829779 481 -  59632846 gtagcttctaa---tatttgcctcaagcactatt---tttcaggggacccaaatggagacTCTATCTAACTAGAAATAAGAAAAACAAAAAAGATTAATGATTGATTAAGGGCCCAGTTGAAAATAGAAATTGTAAGATTTATCTTCAGTCAGTAAATAGAGTTATAGGATTTTCCCCC--------CAGAATATAAGTAGAGAAAACACAGAATTAGGTTCATTTATTCATTCAGCAAATTGAGTTTCTCTTAAGTGTCAGTCACTAGATTAGTCATGAGAGATTTCAAGAT-AC-AAAAA-AAAAAAAAAAAAATAGCAACCCAGAGGATTCTAGTTAGTCCTTCTTTAGGAATTAACATTATGTGGTAGGATTTCAACTCAAGATCATCCAAGATACAGATAAAGTAGCGTTTGTAAAGAATTGAGAGAG-AAGAATTAATATATTAAA----CAATAAGGAGGGGTGAAGAAA---CAGAAGGTCCAGGCGAGATCACTGAA
i canFam3.chr16            I 105 C 0
e calJac3.chr3             190400733 3323 - 190850796 I

a score=402133.000000
s hg38.chr4_KI270925v1_alt    135866 214 +    555799 GTCACTAAGGAGGGG--AAACAGGCAGCGTGGTTCAGAGGAAG-GATGTCAGAACACGTTTCCGAGATTAAGCTCTTCT-GCtgacagcgaagtccagagcatcagcataagggcaagtggcagtgacagggcagagatggagattatctgagcagagaaattcTCAGAGCAATTCACTCGATGTGGCGGATGACTCCCCACTGCAAACTGAAACCTG
s panTro4.chr4             192829536 214 + 193495092 GTCACTAAGGAGGGG--AAACAGTCAGTGTCGTTCAGAGGAAG-GATGTCAGAACACGTTTCCGAGATTAAGCTCTTCT-GCTGACAGCGAAGTCCAGAGCATCAGCATAAGGGCAAGTGGCAGTAACAGGGCAGAGATGGAGATTATCTGAGCAGAGAAATTCTCAGAGCAATTCACGCGATGTGGCGGATGACTCACCACTGCAAACTGAAACCTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197934283 214 + 198332218 GTCACTGAGGAGGGG--AAACGGGCAGTGTCGATCAGAGGAAG-GATGTCAGAACACGTTTCCGAGTTTAAACTATTCT-GCTGACAGCAAAGTCCAGAGCATCAGCATAAGGTCAAGTGGCAGGAACAGGGCAGAGATAGAGCTTATCTGAGCAGAGAAATTCTCAGAGCAATTCGCTCGATGTGGCGGATGACTCACCACTGCAAACTGAAACCTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113690993 213 + 115148730 GTCACTCAGGA-GGG--aaacaggcagtgttgttcagaggaag-gatgtcagaacacgtttccgagattaagctattct-gctgacagcaaaatccagagcatcagcataagggcaagtggcagtaacagggtggagatggagattatctaagcagagaaattcTCAGAGCAATTCGCTCGATGTGGCGGATGACTCATCACTGCAAACTGAAACCTG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183526904 213 + 184069350 ATCACTAAGAAGGGG--AAACAAGCAGTGTCGTTCAGAGAAAG-AATGTCAG-ACACGTTTCTGAGATTAGGCTATTCT-GCTGACAGCAATGTCCAGAGCATCAGCATAAGGGCAAGTGGCACTAACAGGGCAGAGATGGAGATTATCTAAGCAGAGAAATTCTCAGAGCAATACACTCAATGTGGGGGATGACTCATTACCGCAAACTGAAACCTG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188910119 213 + 189454096 ATCACTAAGAAGGGG--AAACAAGCAGTGTCGTTCAGAGAAAG-AATGTCAG-ACACGTTTCTGAGATTAGGCTATTCT-GCTGACAGCAATGTCCAGAGCATCAGCATAAGGGCAAGTGGCACTAACAGGGCAGAGATGGAGATTATCTAAGCAGAGAAATTCTCAGAGCAATACACTCAATGTGGGGGATGACTCATTACCGCAAACTGAAACCTG
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135274383 213 + 135778131 ATCACTAAGAAGGGG--AAACAAGCAGCGTCGTTCAGAGAAAG-GATGTCAG-ACACATTTCTGAGATTAGGCTACTCT-GCTGACAGCAATGTCCAGAGATTCAGCATAAGGGTAAGTGGCACGAACAGGGCAGAGATGGAGATTATCTAAGCAGAGAAATTCTCAGAGCAATACACTCAATGTGGAGGATGACTCATTACCGCAAACTGAAACCTG
i chlSab2.chr7             C 0 I 202
s mm10.chr8                 87525829 196 - 129401213 GCTATAAAATGGGAG--AAATATATG----CATTCAATGGGGGAAATGTGAGAATACAATTTTGAGATCAGGCTATTGT-GAGGACAGCGAACTTCAAAGTAATACCATGGAGTTA------------GGGTTATATATGACATCCA--TGAGAGGAGGAACTCAAAGAAT-GTTGGCATAAGCACACGGATGAACCATCAATGTGGATGCAAACTTA
i mm10.chr8                C 0 C 0
s canFam3.chr16             17830260 199 -  59632846 -----TAAGAAGGGGTAAAAGAGACAGT-----------AAAA-AATGTCAGAACACATTTCAGTTATTTAGCCATTCCGggtgacagcagagtccagaatacaagcataagagtgagtggtgccaatggagcagagattaagactgtgaaaggagaagaatccaaagaagtgaaaaacagatgt-gtggttgattcatcagtgtgacttggaaatt-
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190400733 3323 - 190850796 I
e papAnu2.chr5             178332944 875 + 178775436 I

a score=15667.000000
s hg38.chr4_KI270925v1_alt    136080 19 +    555799 CAGGGAGTAAAACAAAGGC
s panTro4.chr4             192829750 19 + 193495092 TAGGGAGTAAAACAAAGGC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197934497 19 + 198332218 CAGGGAGTAATACAAAGGC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113691206 18 + 115148730 TACGGAGTAACAC-AAGGC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183527117 19 + 184069350 TAAAGAGTAATACCAAGGC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188910332 19 + 189454096 TAAAGAGTAATACCAAGGC
i macFas5.chr5             C 0 I 1035
s mm10.chr8                 87526025 16 - 129401213 --CAGCGTAAGAATGGGA-
i mm10.chr8                C 0 C 0
s canFam3.chr16             17830459 19 -  59632846 cataagataaaacagaagA
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190400733 3323 - 190850796 I
e chlSab2.chr7             135274596 202 + 135778131 I
e papAnu2.chr5             178332944 875 + 178775436 I

a score=31295.000000
s hg38.chr4_KI270925v1_alt    136099 16 +    555799 TATGGG---CCA-CCTGAGT
s panTro4.chr4             192829769 16 + 193495092 TATGGG---CCA-CCTGAGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197934516 16 + 198332218 TATGGG---CCA-CCTGAGT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113691224 16 + 115148730 TATGGG---CCA-CCTGAGT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183527136 16 + 184069350 TACGGG---CCA-CCTGAGT
i rheMac3.chr5             C 0 I 703
s macFas5.chr5             188911386 16 + 189454096 TATGGG---CCA-CCTGAGT
i macFas5.chr5             I 1035 C 0
s chlSab2.chr7             135274798 16 + 135778131 TATGGG---CCA-CCTGAGT
i chlSab2.chr7             I 202 C 0
s mm10.chr8                 87526041 17 - 129401213 AATGGT---ACACCCTTAGT
i mm10.chr8                C 0 C 0
s canFam3.chr16             17830478 19 -  59632846 TGTTCGTTTCTA-CTTTGGT
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190400733 3323 - 190850796 I
e papAnu2.chr5             178332944 875 + 178775436 I

a score=28776.000000
s hg38.chr4_KI270925v1_alt    136115 27 +    555799 GTTTGCTCT----TCCCTCAATGCAGCTGAG
s panTro4.chr4             192829785 27 + 193495092 GTTTGCTCT----TCCCTCAATGCAGCTGAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197934532 27 + 198332218 GTTTGCTCT----TCCCTCAGTGCCGCTGAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113691240 27 + 115148730 GTTTGCTCT----TCCCTCAATGCAGCTGAG
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188911402  9 + 189454096 GTTTGCTCT----------------------
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135274814 27 + 135778131 GTTTGCTCT----TCCCTCAATGCAGCTGAG
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87526058 26 - 129401213 -----CTCCGATGTCCTTAAAATAGGCTTAG
i mm10.chr8                C 0 C 0
s canFam3.chr16             17830497 27 -  59632846 CTTTGCTCT----TCTGTCAACTTGGTTGAG
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190400733 3323 - 190850796 I
e papAnu2.chr5             178332944 875 + 178775436 I
e rheMac3.chr5             183527152 703 + 184069350 I

a score=401046.000000
s hg38.chr4_KI270925v1_alt    136142 201 +    555799 -CTGGGAACAGT--CCAGAACTGAGAAGAGAGAGCGCTAAGTCCACCAACCGCTCAATTAAAACGGCCTGCGCCAGCCCAGTGATGGGTGGGAC---------GAGATTTTTACAGACCT------------------------------------------------------------GGTGAGAAGCGACACCAACAGGAAAAATAGCATGTAGGGATGAGGGAAAGTTGGGAAGAAGTGATTAGGAAACAAGACGGAAGATTCAGTTCT
s panTro4.chr4             192829812 201 + 193495092 -CTGGGAACAGC--CCAGAACCGAGAAGAGAGAGCACTAAGTCCACCAACCGCTCAATTAAAACAGCCTGCACCAGCCCAGTGATGGGTGGGAT---------GATATTTTTACAGACCT------------------------------------------------------------GGTGAGAAGCGACACCAACAGGAAAAATAGCATGTAGGGATGAGGGAAAGTTGGGAAGAAGTGATTAGGAAACAAGACGGAAGATTCAGTTCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197934559 201 + 198332218 -CTGGGAACAGC--CTGCAACCGAGAAGAGAGAGCGCTGAGTCCATCAACCGCTCAATTAAAACGGCCTGCGCCAGCCCAGGGATGGGCGGGAC---------GAGATTTTTACAGACCT------------------------------------------------------------GGTGAGAAGCAAAGCCAACAGGAAAAATAGCACGTAGGGATGAGCGAAAGTTGGGAAGAAGTGATTAGGAAACAAGACGGAAGATTCAGTTCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113691267 200 + 115148730 -CTGGGAACAGC--CTGCAACCAAGAAGAGAGAGCGCTAAGTCCACCAGCTGCTCAATTAAAACGGCCTCCGCCAGCCCAGTGATGGGT-GGAC---------GAGATTTTTACAGACCT------------------------------------------------------------GGTGAGAAGCGACACCAACAGGAAAAATAGCATGTAGGGATGAGGGAAAGTTGGGAAGAAGTGATTAGGAAACAAGACGGAAGATTCAGTTCT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183527855 201 + 184069350 -CTGGGAACAGC--CTGCAACTGAGAAGAGAGAGCACCAAGTCCACCAACTGCTCAATTAAAATGGGCTGCGCCAGCCCAGTAATGGGTGGGAC---------GAGATTTTTACAGACCT------------------------------------------------------------GGTGAGAAGCGACACCAATAGGAAAAATAGCACGTAGGGATGAGGGAAAGTTGGGAAGAAGTGATTAGGAAACAAGACTGAAGATTCAGTTCT
i rheMac3.chr5             I 703 C 0
s macFas5.chr5             188911411 199 + 189454096 ---GGGAACAGC--CTGCAACTGAGAAGAGAGAGCACCAAGTCCACCAACTGCTCAATTAAAATGGGCTGCGCCAGCCCAGTAATGGGTGGGAC---------GAGATTTTTACAGACCT------------------------------------------------------------GGTGAGAAGCGACACCAATAGGAAAAATAGCACGTAGGGATGAGGGAAAGTTGGGAAGAAGTGATTAGGAAACAAGACTGAAGATTCAGTTCT
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135274841 201 + 135778131 -CTGGGAACAGC--CTGCAACCGAGAAGAGAGAGCACCAAGTCCACCAACTGCTCAATTAAAATGGGCTGCAACAGCCCACTAATGGGTGAGAC---------GAGATTTTTACAGACCT------------------------------------------------------------GGTGAGAAGCAACACCAATAGGAAAAATCGCACATAGAGATGAGGGAAAGTTGGGAAGAAGTGATTAGGAAACAAGACTGAAGATTCAGTTCT
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87526084 247 - 129401213 --CTAAAGCAAC--CTGCAA--GAGAAGAAAG-GAGATGAACTCACCAATGGCCCAA-AATAATAACATTCATCTATACAGCAATGGGTAAGTTAGCATTTCAGAGACTTCAACAGATACACTATG-----------CTTA------ACTGTGCTGT-AAACTAATTTACAAGGGGTGGGGGTGGGGAATGAGACTAATAGGGGAAATACCACACAGAAATTATAGAAGGTCAAGGATACATTATTGCAGAACAAAATAGGGGGCTTAGTTTT
i mm10.chr8                C 0 I 67
s canFam3.chr16             17830524 253 -  59632846 ATAAGAACCAACCACCATAACCAAGAAGGAAAAGTGCTAAGTGAACCAGCTGCTCAATTACAATAACCTGTATCAGCCCAGTAATGGATGAAAT---------AAGATTTC-ACAGGCCTTTTCTGGATATAAATATCTTAACCATCACCATGCTGTGAAGCCAATCCCCAT--------GGTGAGAAGTGATACAAACAGG-TCAACAGGACGTAGAAATGAGAGGAAGCAAGGAAGGAATTATTAGGAAACAGAATAGAAAGTTCACCCT-
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190400733 3323 - 190850796 I
e papAnu2.chr5             178332944 875 + 178775436 I

a score=42216.000000
s hg38.chr4_KI270925v1_alt    136343 25 +    555799 GCGTAGCAAGTGCAGCTCTGCAATG------
s panTro4.chr4             192830013 25 + 193495092 GCGTAGCAAGTGCAGCTCTGCAATG------
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197934760 25 + 198332218 GCGTAGCAAGTGCAGCTCTGCAATG------
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113691467 25 + 115148730 GCGTAGCAAGTGCAGCTCTGCAATG------
i nomLeu3.chr7b            C 0 I 6
s rheMac3.chr5             183528056 25 + 184069350 GCATAGTAAGTGCCGCTCTGCAATG------
i rheMac3.chr5             C 0 I 9
s macFas5.chr5             188911610 25 + 189454096 GCATAGTAAGTGCCGCTCTGCAATG------
i macFas5.chr5             C 0 I 9
s chlSab2.chr7             135275042 25 + 135778131 GCATAGTAAGTGCCGCTCTGCAATG------
i chlSab2.chr7             C 0 I 9
s canFam3.chr16             17830777 26 -  59632846 GTATGACAAGGGCA-----ACAAAGGTGGTG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87526331 67 - 129401213 I
e calJac3.chr3             190400733 3323 - 190850796 I
e papAnu2.chr5             178332944 875 + 178775436 I

a score=87722.000000
s hg38.chr4_KI270925v1_alt    136368 44 +    555799 -GGGGGCGAATCAGAGCCGGGGGG-CCAC----AGAGCAGCAGAGCAGGG
s panTro4.chr4             192830038 42 + 193495092 -GGGGGCGAATCAGAGCCGGGGGG-CCGC----AGAGCAGC--AGCAGGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197934785 44 + 198332218 -CGGGGCGAATCAGAGCCGGGGGC-CCGC----AGAGCAGCAGCGCAGGG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113691498 44 + 115148730 -GGGGGCGAATCAGAGCCGGGGGG-TCGC----AGAGCAGCAGCACGGGG
i nomLeu3.chr7b            I 6 C 0
s rheMac3.chr5             183528090 44 + 184069350 -AGGGGTGAATCAGAGCCTGGTGG-CCGC----AGAGCAGCAGCACAGGG
i rheMac3.chr5             I 9 C 0
s macFas5.chr5             188911644 44 + 189454096 -GGGGGTGAATCAGAGCCTGGTGG-CCGC----AGAGCAGCAGCACAGGG
i macFas5.chr5             I 9 C 0
s chlSab2.chr7             135275076 44 + 135778131 -GGGGGTGAATCAGAGCCCAGTGG-CCGC----AGAGCAGCAGCACAGGG
i chlSab2.chr7             I 9 C 0
s calJac3.chr3                440111 45 + 190850796 -GGGTGCAAATCTGAGCCCGGGGGCCCTC----AGAGCAGCAGCGCAGGG
i calJac3.chr3             n 3323 C 0
s canFam3.chr16             17830803 48 -  59632846 GAGAGGTGAGT-AGAGTGGGGAGG-ATGCCAGGAAAGGAGCTGGAGAGAA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87526331 67 - 129401213 I
e papAnu2.chr5             178332944 875 + 178775436 I

a score=541793.000000
s hg38.chr4_KI270925v1_alt    136412 271 +    555799 CACTGCG-T-GCGCAGGTGAG-GG---------------AGGTGCAGGCAGGAATGGCTGCTGCTGTGAACACCA-GGGTGGCCTTTCCCATGCTCTGGCTAAATGAcat-------gcaggaccatgcaagaccatgcaaaaccatgcaGGGCTAGTGTTACTGCTTTATCTAATTGTGCCATTTGCTTCCGTAAACAATAACAAACCCCTCAAGCCCAGAGATACCTTATCTTACCAAGAGAACAG-GAG-CCGTCCTGGACAGCCGTGCTG-GGCT-CTGATGTTC-TGGTCAcagaac
s panTro4.chr4             192830080 271 + 193495092 CACTGCG-T-GCGCGGGTGAG-GG---------------AGGTGCAGGCAGGAATGGCTGCTGCTGTGAACACCA-GGGTGGCCTTTCCCATGCTCCGGCTAAATGAcat-------gcaggaccatgcaagaccatgcaggaccatgcaggGCTAGTGTTACTGCTTTATCTAATTGTGCCATTTGCTTCCATAAACAATAACAAACCCCTCAAGCCAAGAGATACCTTATCTTACCAAGAGAACAG-GAG-CCGTCCTGGACAGCCGTGCTG-GGCT-CTGATGTTC-TGGTCAcagaac
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197934829 249 + 198332218 CACTGCG-T-GTGCAGGTGAG-GG---------------AGGTGCAGGCAGGAATGGCTGCTGCTGTGAACAT---GGGTGGCCTTTCCCATGCTCTGGCTAAATGACAT-------GCAGG--------------------ACCATGCAGGGCTACTGTTACTGCTTTGTCTAATTGTGCCATTTGCTTCCGTAAACAATGCCAAACCCCTCAAACCAAGAGATACCTTATCTTACCAAGAGAACAG-GAG-CCCTCCTGGACAGCCCTGCTG-GGCT-CTGATGTTC-TGGCCAcagaac
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113691542 247 + 115148730 CACTGCG-T-GTGCGGGTGAG-GG---------------AGGTGCAGGCAGGAATGGCCGCTGCTGTGAA------GGGTGGCCTTTCCCATGCTCTGGCTAAATGACAT-------GCAGG--------------------ACCATGCAGGGCTGCTGTTACTGCTTTATCTAATTGTGCCATTTGCTTCCGTAAACAATGCCAAACCCCTTAAACCAAGAGATACCTTATCTTACCAAGAGAACAG-GAGCCCCTCCTGGACAGCCGTGCTG-GGCT-CTGATGTTC-TGGCCACAGAAC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183528134 265 + 184069350 CACTGTG-T-GTGCAGGTGAG-GGAGGTGCAGGTGAGGCAGGTGCAGGCAGGAATGGCTGCT-CTGTGAATACCA-GGGCGGCCTTTCCCATGCTCTGGCTAAAGGACAT-------GCAGG--------------------ACCATGCAGAGCTAGTGTTACTGCTTTATCTAATTGT-CCATTTGCTTCTGTAAACAATGCCAAACCCCTCAAACCCGGAGATATCTTATCTTACTAAGAGAACAG-GAG-CCCTCCTGGATAGCCGTGCTG-GGCTCCCGATGTTC-TGGCCAcagaac
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188911688 265 + 189454096 CACTGTG-T-gtgcaggtgag-ggaggtgcaggtgaggcaggtgcaggCAGGAATGGCTGCT-CTGTGAATACCA-GGGCGGCCTTTCCCATGCTCTGGCTAAAGGACAT-------GCAGG--------------------ACCATGCAGAGCTAGTGTTACTGCTTTATCTAATTGT-CCATTTGCTTCTGTAAACAATGCCAAACCCCTCAAACCCGGAGATATCTTATCTTACTAAGAGAACAG-GAG-CCCTCCTGGATAGCCGTGCTG-GGCTCCCGATGTTC-TGGCCAcagaac
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135275120 264 + 135778131 CACTGTG-T-gtgcaggtgag-ggaggtgcaggtgaggcaggtgcaggCAGGAATGGCTGCT-CTGTGAATACCA-GGGCGGCCTTTCCCATGCTCCGGCTAAAGGACAT-------GCAGG--------------------ACCATGCAGAGCTAGTGTTACTGCTTTATCTAATTGT-CCATTTGCTTCTGTAAACAATGCCAAACCCCTCAAACCCAGAGATATCTTATCTTACTAAGAG-ACAG-GAG-CCCTCCTGGATAGCCGTGCTG-GGCTCCTGATGTTC-TGGCCACAGAAc
i chlSab2.chr7             C 0 C 0
s calJac3.chr3                440156 239 + 190850796 CACTGTG-TGGTGCAGGTGA-------------------AGGTG----------TGGCTACTGCTGGGGATGCCA-GGGTGGCCTTTCCTACCCTCCGCCTTAAGACCAG-------GCAGG--------------------CCCCTGCAGGGCCAGTGTTACTGCTTTGTTTAAGTGAGCCATTTGCTTCTGTAAACAATGCCAAATCCCTCACCTGGAGAGATGCCTTGTCATACTAATCA-ACAG-AAG-CCCTCCTGAACAGCCGTCCTG-GGCTCCTGATGTTC-TGGCCAcagaac
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87526398 217 - 129401213 CACTATGCT-CTGCAAATGATCGG---------------AGATGCAGGCAATAATGGCTCCCATTGTGAAAATGG-TGGTGGGCTTTCTTAATCACT-----ATTAACA---------CAAT--------------------ACCATATAGGAACAA------TGCTTTGTCTAATTGTATCATTTG----TATAAGAAAGGTCAACCCCCTCAAACTGAGTTATACCT---------------------AC-CTCTTTAAAGTGTttttacta-ggtacctcaggtttatatacctagaa-
i mm10.chr8                I 67 C 0
s canFam3.chr16             17830851 262 -  59632846 TACTGTG-T-TCTAAGGGCAG-TGAG-------------AAGTGCAGGT-GCCAGAGTCACCATTGCGAAAATAGTGTGTGGGCTTTGCCATTCTCCGACTAAATTACACTAGAAAGGCAGT--------------------GCCATGCATGGTTAATGTTATGGCTTTCTTTAATGATGCCATTT-CCTCCATAAGCAATGCCAAAGTCCTCAAACTCAGAGATACTCAACCTTATTGGAAGACTGGAGAG-TACTCATAATAAACCAAGCTGTGGCTTCTTACCTTG-TGACCATGCAGT
i canFam3.chr16            C 0 C 0
e papAnu2.chr5             178332944 875 + 178775436 I

a score=91965.000000
s hg38.chr4_KI270925v1_alt    136683 29 +    555799 cctgct---ctgccccttctaagcctcctggc
s panTro4.chr4             192830351 29 + 193495092 cctgct---ctgccccttctaagcctcctggc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197935078 29 + 198332218 cctgct---ctgccccttctaagcctcctggc
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113691789 29 + 115148730 CCTGAT---CTGCCCCTTCTCAGCCTCCTGGC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183528399 29 + 184069350 cctgct---ctgccccttctcagcctcctggc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188911953 29 + 189454096 cctgct---ctgccccttctcagcctcctggc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178333819 29 + 178775436 CCTGCT---CTCCCCCTTCTCGGCCTCCTGGC
i papAnu2.chr5             I 875 C 0
s chlSab2.chr7             135275384 28 + 135778131 cctgct---cta-cccttctcagcctcctggc
i chlSab2.chr7             C 0 C 0
s calJac3.chr3                440395 28 + 190850796 cctgcc---ctgccccttctcagtctccc-ac
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87526615 32 - 129401213 cttgctatattgccactcatgatcctcctgac
i mm10.chr8                C 0 I 175
s canFam3.chr16             17831113 29 -  59632846 ATGGTC---CTGCCCCTTAGCAGTCTTCCAGG
i canFam3.chr16            C 0 C 0

a score=227363.000000
s hg38.chr4_KI270925v1_alt    136712 64 +    555799 atcagggagttgggaagcctggaagctgcacccaccagcacccctggct-ggcagagccgcccac
s panTro4.chr4             192830380 64 + 193495092 atcagggagttgggaagcctggaagttgcacccaccagcacccctggct-ggcagagccacccac
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197935107 64 + 198332218 atcagggagttgggaagcctggaagctgtacccaccagcacccctggct-ggcagagccgcccac
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113691818 64 + 115148730 ATCAGGGAGTTGGGAAGCCTGGAAGCTGCACCCACCAGCACCCCTGGCT-GGCAGAGCTGCCCAC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183528428 64 + 184069350 atcagggagttgggaagcctggaagctgcacccaccagcacccctggct-agcagagccgcccac
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188911982 64 + 189454096 atcagggagttgggaagcctggaagctgcacccaccagcacccctggct-agcagagccgcccac
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178333848 64 + 178775436 ATCAGGGAGTTGGGAAGCCTGGAAGCTGCACCCACCAGCACCCCTGGCT-AGCAGAGCCGCCCAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135275412 64 + 135778131 atcagggagctgggaagcctggaagctgcacccaccagcacccctggct-agcagagccgcccac
i chlSab2.chr7             C 0 C 0
s calJac3.chr3                440423 65 + 190850796 ctcagagaactgggaagcctgggaagtgcacccactagcacccctggctaagcagagccgcccat
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17831142 63 -  59632846 ATCACAGAGTCGGGAAGCTTAGAA-CTGCAATCACCAGCATCCCTAGCC-AGCACAGTAGTCAAG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87526647 175 - 129401213 I

a score=3666347.000000
s hg38.chr4_KI270925v1_alt    136776 1094 +    555799  
s panTro4.chr4             192830444 1095 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197935171 1097 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113691882 1031 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183528492 1071 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188912046 1071 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178333912 1080 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135275476 1076 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3                440488 1059 + 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87526822 1026 - 129401213  
i mm10.chr8                I 175 I 1302
s canFam3.chr16             17831205 1039 -  59632846  
i canFam3.chr16            C 0 C 0

a score=1716143.000000
s hg38.chr4_KI270925v1_alt    137870 567 +    555799  
s panTro4.chr4             192831539 568 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197936268 566 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113692913 568 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183529563 579 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188913117 579 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178334992 577 + 178775436  
i papAnu2.chr5             C 0 I 3
s chlSab2.chr7             135276552 580 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3                441547 561 + 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17832244 620 -  59632846  
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87527848 1302 - 129401213 I

a score=6466.000000
s hg38.chr4_KI270925v1_alt    138437 3 +    555799 AAT
s panTro4.chr4             192832107 3 + 193495092 AAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197936834 3 + 198332218 AAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113693481 3 + 115148730 AAT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183530142 3 + 184069350 AAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188913696 3 + 189454096 AAC
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135277132 3 + 135778131 AAC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3                442108 3 + 190850796 AAC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17832864 3 -  59632846 GAT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87527848 1302 - 129401213 I
e papAnu2.chr5             178335569 3 + 178775436 I

a score=20811.000000
s hg38.chr4_KI270925v1_alt    138440 6 +    555799 AGAACC
s panTro4.chr4             192832110 6 + 193495092 AGAACC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197936837 6 + 198332218 AGAACC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113693484 6 + 115148730 AGAACC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183530145 6 + 184069350 AGAACT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188913699 6 + 189454096 AGAACT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178335572 6 + 178775436 AGAACC
i papAnu2.chr5             I 3 C 0
s chlSab2.chr7             135277135 6 + 135778131 AGAACC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3                442111 6 + 190850796 AGAGCC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17832867 6 -  59632846 AGGACT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87527848 1302 - 129401213 I

a score=47412.000000
s hg38.chr4_KI270925v1_alt    138446 23 +    555799 GATAAACCCACGTTCAGGGTGTC
s panTro4.chr4             192832116 23 + 193495092 GATAAACCCACGTTCAGGGTGTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197936843 23 + 198332218 GATAAACCCACGTTCAGGGTGTC
i ponAbe2.chr4             C 0 T 36
s nomLeu3.chr7b            113693490 23 + 115148730 GATAAACCCATGTTCAGGGTATC
i nomLeu3.chr7b            C 0 T 40
s rheMac3.chr5             183530151 23 + 184069350 GCTGAACCCACGTTCGGGGTGTC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188913705 23 + 189454096 GCTGAACCCACGTTCGGGGTGTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178335578 23 + 178775436 GCTGAACCCACGTTCGGGGTGTC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135277141 23 + 135778131 GATGAACCCACGTTCAGGGTGTC
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17832873 13 -  59632846 ACCATAGCGACGC----------
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87527848 1302 - 129401213 I
e calJac3.chr3                442117  0 + 190850796 C

a score=5838.000000
s hg38.chr4_KI270925v1_alt    138469 4 +    555799 CACC
s panTro4.chr4             192832139 4 + 193495092 CACC
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113693473 4 + 115148730 CACT
i nomLeu3.chr7b            T 40 C 0
s rheMac3.chr5             183530174 4 + 184069350 CACT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188913728 4 + 189454096 CACT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178335601 4 + 178775436 CACT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135277164 4 + 135778131 CACT
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17832886 3 -  59632846 CAC-
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87527848 1302 - 129401213 I
e calJac3.chr3                442117 0 + 190850796 C
e ponAbe2.chr4             197936866 36 + 198332218 T

a score=47105.000000
s hg38.chr4_KI270925v1_alt    138473 20 +    555799 ATGAAATAGAACCGATAAAC
s panTro4.chr4             192832143 20 + 193495092 ATGAAATAGAACCGATAAAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197936830 20 + 198332218 ATGAAATAGAACCGATAAAC
i ponAbe2.chr4             T 36 C 0
s nomLeu3.chr7b            113693477 20 + 115148730 ATGAAATAGAACCGATAAAC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183530178 20 + 184069350 GTGAAACGGAACCGCTGAAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188913732 20 + 189454096 GTGAAACGGAACCGCTGAAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178335605 20 + 178775436 GTGACACAGAACCGCTGAAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135277168 20 + 135778131 GTGAAACAGAACCGATGAAC
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17832889 14 -  59632846 ------TAGAACCAATGAAC
i canFam3.chr16            C 0 I 89
e mm10.chr8                 87527848 1302 - 129401213 I
e calJac3.chr3                442117  0 + 190850796 C

a score=46382.000000
s hg38.chr4_KI270925v1_alt    138493 20 +    555799 CCACGTTCAGGGTGTCCACC
s panTro4.chr4             192832163 20 + 193495092 CCACGTTCAGGGTGTCCACC
i panTro4.chr4             C 0 I 560
s ponAbe2.chr4             197936850 20 + 198332218 CCACGTTCAGGGTGTCCACT
i ponAbe2.chr4             C 0 T 40
s nomLeu3.chr7b            113693497 20 + 115148730 CCATGTTCAGGGTATCCACT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183530198 20 + 184069350 CCACGTTCGGGGTGTCCACT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188913752 20 + 189454096 CCACGTTCGGGGTGTCCACT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178335625 20 + 178775436 CCACGTTCGGGGTGTCCACT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135277188 20 + 135778131 CCACGTTTGGGGTGTACACT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87527848 1302 - 129401213 I
e canFam3.chr16             17832903 89 -  59632846 I
e calJac3.chr3                442117  0 + 190850796 C

a score=52486.000000
s hg38.chr4_KI270925v1_alt    138513 25 +    555799 ATGAAATAGAACTGATAAACCCACG
s panTro4.chr4             192832743 25 + 193495092 ATGAAATAGAACCGATAAACCCACG
i panTro4.chr4             I 560 C 0
s ponAbe2.chr4             197936830 25 + 198332218 ATGAAATAGAACCGATAAACCCACG
i ponAbe2.chr4             T 40 C 0
s nomLeu3.chr7b            113693517 25 + 115148730 ATGAAATAGAACCGATAAACCCATG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183530218 25 + 184069350 GTGAAACAGAACCGATGAACCCACT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188913772 25 + 189454096 GTGAAACAGAACCGATGAACCCACT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178335645 25 + 178775436 GTGACACGGAACCGCTGAACCCACG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135277208 25 + 135778131 ATGAAACAGAACCGATGAACCCACG
i chlSab2.chr7             C 0 I 40
e mm10.chr8                 87527848 1302 - 129401213 I
e canFam3.chr16             17832903 89 -  59632846 I
e calJac3.chr3                442117  0 + 190850796 C

a score=71199.000000
s hg38.chr4_KI270925v1_alt    138538 35 +    555799 TTCAGGGTGTCCACTATGAAATAGAACCGATAAAC
s panTro4.chr4             192832768 35 + 193495092 TTCAGGGTGTCCACTATGAAATAGAACCGATAAAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197936855 35 + 198332218 TTCAGGGTGTCCACTATGAAACAGAACCGATAAAC
i ponAbe2.chr4             C 0 T 61
s nomLeu3.chr7b            113693542 35 + 115148730 TTCAGAGTGTACACTATGAAATAGAAATGATAAAC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183530243 35 + 184069350 TTCAGAGTGTACACTGTGAAACAGAACTGATGAAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188913797 35 + 189454096 TTCAGAGTGTACACTGTGAAACAGAACTGATGAAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178335670 35 + 178775436 TTCGGGGTGTCCACTGTGACACGGAACCGCTGAAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135277273 35 + 135778131 TTCGGGGTGTACACTATGAAACAGAACTGACGAAT
i chlSab2.chr7             I 40 C 0
e mm10.chr8                 87527848 1302 - 129401213 I
e canFam3.chr16             17832903 89 -  59632846 I
e calJac3.chr3                442117  0 + 190850796 C

a score=7376.000000
s hg38.chr4_KI270925v1_alt    138573 5 +    555799 CCACG
s panTro4.chr4             192832803 5 + 193495092 CCACG
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113693577 5 + 115148730 CCATG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183530278 5 + 184069350 CCACT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188913832 5 + 189454096 CCACT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178335705 5 + 178775436 CCACG
i papAnu2.chr5             C 0 I 40
s chlSab2.chr7             135277308 5 + 135778131 CCACG
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87527848 1302 - 129401213 I
e canFam3.chr16             17832903 89 -  59632846 I
e calJac3.chr3                442117 0 + 190850796 C
e ponAbe2.chr4             197936890 61 + 198332218 T

a score=44140.000000
s hg38.chr4_KI270925v1_alt    138578 40 +    555799 TTCAGAGTGTCCACTATTAAATAGAACTGATAAACCCATG
s panTro4.chr4             192832808 40 + 193495092 TTCAGAGTGTCCACTATTAAATAGAACTGATAAACCCACG
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113693582 39 + 115148730 TTCAGGGTGTACGCTATGAAATAGAAATGATAAACCCAT-
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183530283 40 + 184069350 TTCAGAGTGTACACTGTGAAACAGAACTGATGAACCCACT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188913837 28 + 189454096 TTCAGAGTGTACACTGTGAAACAGAACG------------
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178335750 40 + 178775436 TTCGGGGTGTCCACTGTGACACGGAAGCGCTGAACCCACG
i papAnu2.chr5             I 40 C 0
s chlSab2.chr7             135277313 40 + 135778131 TTCAGGGTGTCCACTGTGAAACAGAACTGATGAATCCACG
i chlSab2.chr7             C 0 T 103
e mm10.chr8                 87527848 1302 - 129401213 I
e canFam3.chr16             17832903 89 -  59632846 I
e calJac3.chr3                442117  0 + 190850796 C
e ponAbe2.chr4             197936890 61 + 198332218 T

a score=546.000000
s hg38.chr4_KI270925v1_alt    138618 1 +    555799 T
s panTro4.chr4             192832848 1 + 193495092 T
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183530323 1 + 184069350 T
i rheMac3.chr5             C 0 I 14
s papAnu2.chr5             178335790 1 + 178775436 T
i papAnu2.chr5             C 0 T 66
e mm10.chr8                 87527848 1302 - 129401213 I
e canFam3.chr16             17832903 89 -  59632846 I
e calJac3.chr3                442117 0 + 190850796 C
e chlSab2.chr7             135277353 103 + 135778131 T
e macFas5.chr5             188913865 0 + 189454096 C
e nomLeu3.chr7b            113693621 0 + 115148730 C
e ponAbe2.chr4             197936890 61 + 198332218 T

a score=613.000000
s hg38.chr4_KI270925v1_alt    138619 2 +    555799 AT
s panTro4.chr4             192832849 2 + 193495092 AT
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183530338 2 + 184069350 GT
i rheMac3.chr5             I 14 C 0
s papAnu2.chr5             178335725 2 + 178775436 GT
i papAnu2.chr5             T 66 C 0
e mm10.chr8                 87527848 1302 - 129401213 I
e canFam3.chr16             17832903 89 -  59632846 I
e calJac3.chr3                442117 0 + 190850796 C
e chlSab2.chr7             135277353 103 + 135778131 T
e macFas5.chr5             188913865 0 + 189454096 C
e nomLeu3.chr7b            113693621 0 + 115148730 C
e ponAbe2.chr4             197936890 61 + 198332218 T

a score=29177.000000
s hg38.chr4_KI270925v1_alt    138621 32 +    555799 GAAATAGAACCGATAAACCCAGGTTCAGGGTT
s panTro4.chr4             192832851 32 + 193495092 GAAATAGAACCGATAAACCCAGGTTCAGGGTT
i panTro4.chr4             C 0 I 512
s nomLeu3.chr7b            113693621 10 + 115148730 ----------------------GTTCAGGGTG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183530340 32 + 184069350 GAAACAGAACCGATGAACCCACATTCGGGGTG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188913865 21 + 189454096 -----------GATGAACCCACATTCGGGGTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178335727 32 + 178775436 GACACGGAACCAATGAACCCACGTTCGGGGTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135277250 32 + 135778131 GAAACAGAACTGATGAATCCACGTTCGGGGTG
i chlSab2.chr7             T 103 C 0
e mm10.chr8                 87527848 1302 - 129401213 I
e canFam3.chr16             17832903 89 -  59632846 I
e calJac3.chr3                442117  0 + 190850796 C
e ponAbe2.chr4             197936890 61 + 198332218 T

a score=34299.000000
s hg38.chr4_KI270925v1_alt    138653 25 +    555799 TCCACTATGAAATAGAACTGATAAA
s panTro4.chr4             192833395 25 + 193495092 TCCACTATGAAATAGAACTGATAAA
i panTro4.chr4             I 512 C 0
s nomLeu3.chr7b            113693631 25 + 115148730 TACACTGTGAAACAGAACCGATAAA
i nomLeu3.chr7b            C 0 T 191
s rheMac3.chr5             183530372 25 + 184069350 TCCACTGTGAAATGGAACTGCTGAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188913886 25 + 189454096 TCCACTGTGAAATGGAACTGCTGAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178335759 25 + 178775436 TCCACTGTGACACGGAAGCGCTGAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135277282 25 + 135778131 TACACTATGAAACAGAACTGACGAA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87527848 1302 - 129401213 I
e canFam3.chr16             17832903 89 -  59632846 I
e calJac3.chr3                442117  0 + 190850796 C
e ponAbe2.chr4             197936890 61 + 198332218 T

a score=3443.000000
s hg38.chr4_KI270925v1_alt    138678 3 +    555799 CCC
s panTro4.chr4             192833420 3 + 193495092 CCC
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183530397 3 + 184069350 CCC
i rheMac3.chr5             C 0 I 1
s macFas5.chr5             188913911 3 + 189454096 TCC
i macFas5.chr5             C 0 I 1
s papAnu2.chr5             178335784 3 + 178775436 CCC
i papAnu2.chr5             C 0 I 1
s chlSab2.chr7             135277307 3 + 135778131 TCC
i chlSab2.chr7             C 0 T 77
e mm10.chr8                 87527848 1302 - 129401213 I
e canFam3.chr16             17832903 89 -  59632846 I
e calJac3.chr3                442117 0 + 190850796 C
e nomLeu3.chr7b            113693656 191 + 115148730 T
e ponAbe2.chr4             197936890 61 + 198332218 T

a score=-1147.000000
s hg38.chr4_KI270925v1_alt    138681 4 +    555799 CACT
s panTro4.chr4             192833423 4 + 193495092 CACT
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183530401 2 + 184069350 CA--
i rheMac3.chr5             I 1 C 0
s macFas5.chr5             188913915 2 + 189454096 CA--
i macFas5.chr5             I 1 C 0
s papAnu2.chr5             178335788 2 + 178775436 CG--
i papAnu2.chr5             I 1 T 80
e mm10.chr8                 87527848 1302 - 129401213 I
e canFam3.chr16             17832903 89 -  59632846 I
e calJac3.chr3                442117 0 + 190850796 C
e chlSab2.chr7             135277310 77 + 135778131 T
e nomLeu3.chr7b            113693656 191 + 115148730 T
e ponAbe2.chr4             197936890 61 + 198332218 T

a score=4230.000000
s hg38.chr4_KI270925v1_alt    138685 3 +    555799 TTC
s panTro4.chr4             192833427 3 + 193495092 TTC
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183530403 3 + 184069350 TTC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188913917 3 + 189454096 TTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178335710 3 + 178775436 TTC
i papAnu2.chr5             T 80 C 0
s chlSab2.chr7             135277233 3 + 135778131 TTC
i chlSab2.chr7             T 77 C 0
e mm10.chr8                 87527848 1302 - 129401213 I
e canFam3.chr16             17832903 89 -  59632846 I
e calJac3.chr3                442117 0 + 190850796 C
e nomLeu3.chr7b            113693656 191 + 115148730 T
e ponAbe2.chr4             197936890 61 + 198332218 T

a score=17311.000000
s hg38.chr4_KI270925v1_alt    138688 11 +    555799 AGGGTGTCCAC
s panTro4.chr4             192833430 11 + 193495092 AGGGTGTCCAC
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113693465 11 + 115148730 AGAGCACTCAC
i nomLeu3.chr7b            T 191 C 0
s rheMac3.chr5             183530406 11 + 184069350 GGGGTGTCCAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188913920 11 + 189454096 GGGGTGTCCAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178335713 11 + 178775436 AGGGTGTCCAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135277236 11 + 135778131 AGGGTGTCCAC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87527848 1302 - 129401213 I
e canFam3.chr16             17832903 89 -  59632846 I
e calJac3.chr3                442117  0 + 190850796 C
e ponAbe2.chr4             197936890 61 + 198332218 T

a score=234592.000000
s hg38.chr4_KI270925v1_alt    138699 121 +    555799 TATGAAATAGAACCGATAAACCCACGTTCAGGGTGTCCACCATGAAATAGAACCGATAAACCCACGTTCAGGGTGTCCACTATGAAAT----------------------------------------AGAACTGATAAACCCACGTTCAGAGTGTACACT
s panTro4.chr4             192833441 161 + 193495092 TATGAAATAGAACCGATAAACCCACGTTCAGGGTGTCCACTATGAAATAGAACCGATAAACCCACGTTCAGAGTGTACACTATGAAATAGAACCGATAAACCCACGTTCAGAGTGTCCACTGTGAAACAGAACCGATAAACCCACGTTCAGAGTGTACACT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197936829 121 + 198332218 TATGAAATAGAACCGATAAACCCACGTTCAGGGTGTCCACTATGAAACAGAACCGATAAACCCACGTTCAGAGTGTACACTATGAAAT----------------------------------------AGAACTGGTAAACCCATGTTCAGAGTGTACACT
i ponAbe2.chr4             T 61 T 40
s nomLeu3.chr7b            113693476 121 + 115148730 TATGAAATAGAACCGATAAACCCATGTTCAGGGTATCCACTATGAAATAGAACCGATAAACCCATGTTCAGAGTGTACACTATGAAAT----------------------------------------AGAAATGATAAACCCATGTTCAGGGTGTACGCT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183530417 121 + 184069350 TGTGAAATGGAACTGCTGAACCCACATTCGGGGTGTCCACTGTGACACAGAACTGATGAACCCACATTCGGGGTGTCCACTGTGAAAT----------------------------------------GGAACCGCTGAACCCACGTTCAGGGCGTCCACT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188913931 121 + 189454096 TGTGACACAGAACTGATGAACCCACATTCGGGGTGTCCACTGTGAAATGGAACCGCTGAACCCACGTTCAGGGCGTCCACTGTGAAAC----------------------------------------AGAACCGATGAACCCACGTTCGGGGTGTCCACT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178335724 121 + 178775436 TGTGACACGGAACCAATGAACCCACGTTCGGGGTGTCCACTGTGACACGGAAGCGCTGAACCCACGTTCGGGGTGTCCACTGTGACAC----------------------------------------GGAACCACTGAACCCACGTTCGGGGTGTCCACT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135277247 121 + 135778131 TGTGAAACAGAACTGATGAATCCACGTTCGGGGTGTACACTATGAAACAGAACTGACGAATCCACGTTCAGGGTGTCCACTGTGAAAC----------------------------------------AGAACTGATGAATCCACGTTCGGGGTGTACACT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87527848 1302 - 129401213 I
e canFam3.chr16             17832903  89 -  59632846 I
e calJac3.chr3                442117   0 + 190850796 C

a score=77076.000000
s hg38.chr4_KI270925v1_alt    138820 40 +    555799 ATGAAATAGAACCTAAAAACCCACGTTCAGAGTGTCCACT
s panTro4.chr4             192833602 40 + 193495092 ATGAAATAGAACCGATAAACCCACGTTCAGAGTGTCCACT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197936910 40 + 198332218 ATGAAATAGAACTGGTAAACCCATGTTCAGAGTGTACACT
i ponAbe2.chr4             T 40 T 80
s nomLeu3.chr7b            113693597 40 + 115148730 ATGAAATAGAAATGATAAACCCATGTTCAGGGTGTACACT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183530538 40 + 184069350 GTGAAACAGAACCGATGAACCCACGTTCGGGGTGTCCACT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188914052 40 + 189454096 GTGAAACAGAACCGATGAACCCACTTTCAGAGTGTACACT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178335845 40 + 178775436 GTGACACGGAAGCGCTGAACCCACGTTCGGGGTGTCCACT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135277368 40 + 135778131 ATGAAACAGAACTGACGAATCCACGTTCAGGGTGTCCACT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87527848 1302 - 129401213 I
e canFam3.chr16             17832903 89 -  59632846 I
e calJac3.chr3                442117  0 + 190850796 C

a score=87092.000000
s hg38.chr4_KI270925v1_alt    138860 40 +    555799 ATGAAACAGAACTGATAAACCCACGTTCAGAGTGTACACT
s panTro4.chr4             192833642 40 + 193495092 GTGAAACAGAACCGATAAACCCACGTTCAGAGTGTACACT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197936870 40 + 198332218 ATGAAACAGAACCGATAAACCCACGTTCAGAGTGTACACT
i ponAbe2.chr4             T 80 C 0
s nomLeu3.chr7b            113693637 40 + 115148730 GTGAAACAGAACCGATAAACCCATGTTCAGAGTGTACACT
i nomLeu3.chr7b            C 0 T 40
s rheMac3.chr5             183530578 40 + 184069350 GTGAAACAGAACCGATGAACCCACTTTCAGAGTGTACACT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188914092 40 + 189454096 GTGAAACAGAACTGATGAACCCACGTTCAGAGTGTACACT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178335885 40 + 178775436 GTGACACGGAAGCGCTGAACCCACGTTCGGGGTGTCCACT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135277408 40 + 135778131 GTGAAACAGAACTGATGAATCCACGTTTGGGGTGTACACT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87527848 1302 - 129401213 I
e canFam3.chr16             17832903 89 -  59632846 I
e calJac3.chr3                442117  0 + 190850796 C

a score=60220.000000
s hg38.chr4_KI270925v1_alt    138900 30 +    555799 ATGAAATAGAACCGATAAACCCACGTTCAG
s panTro4.chr4             192833682 30 + 193495092 ATGAAATAGAACCGATAAACCCACGTTCAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197936910 30 + 198332218 ATGAAATAGAACTGGTAAACCCATGTTCAG
i ponAbe2.chr4             C 0 T 80
s nomLeu3.chr7b            113693637 30 + 115148730 GTGAAACAGAACCGATAAACCCATGTTCAG
i nomLeu3.chr7b            T 40 C 0
s rheMac3.chr5             183530618 30 + 184069350 GTGAAACAGAACCGATGAACCCAGATTCAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188914132 30 + 189454096 GTGAAACAGAACCGATGAACCCAGATTCGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178335925 30 + 178775436 GTGACACGGAAGCGCTGAACCCACGTTCGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135277448 30 + 135778131 ATGAAACAGAACCGATGAACCCACGTTCAG
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87527848 1302 - 129401213 I
e canFam3.chr16             17832903 89 -  59632846 I
e calJac3.chr3                442117  0 + 190850796 C

a score=1883.000000
s hg38.chr4_KI270925v1_alt    138930 1 +    555799 G
s panTro4.chr4             192833712 1 + 193495092 G
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197936860 1 + 198332218 G
i ponAbe2.chr4             T 80 C 0
s nomLeu3.chr7b            113693667 1 + 115148730 A
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183530648 1 + 184069350 G
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188914162 1 + 189454096 G
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178335955 1 + 178775436 G
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135277478 1 + 135778131 G
i chlSab2.chr7             C 0 T 80
e mm10.chr8                 87527848 1302 - 129401213 I
e canFam3.chr16             17832903 89 -  59632846 I
e calJac3.chr3                442117 0 + 190850796 C

a score=20473.000000
s hg38.chr4_KI270925v1_alt    138931 9 +    555799 GCGTCCACT
s panTro4.chr4             192833713 9 + 193495092 GTGTCCACT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197936861 9 + 198332218 GTGTCCACT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113693668 9 + 115148730 GTGTACACT
i nomLeu3.chr7b            C 0 T 80
s rheMac3.chr5             183530649 9 + 184069350 GAGTCCACT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188914163 9 + 189454096 GTGTCCACT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178335956 9 + 178775436 GTGTCCACT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135277399 9 + 135778131 GTGTCCACT
i chlSab2.chr7             T 80 C 0
e mm10.chr8                 87527848 1302 - 129401213 I
e canFam3.chr16             17832903 89 -  59632846 I
e calJac3.chr3                442117 0 + 190850796 C

a score=81664.000000
s hg38.chr4_KI270925v1_alt    138940 41 +    555799 ATGAAATAGAAACGTTAAACCCACGTTCAGGGTGTCCACTA
s panTro4.chr4             192833722 41 + 193495092 ATGAAATAGAAACGTTAAACCCATGTTCAGGGTGTCCACTA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197936870 41 + 198332218 ATGAAACAGAACCGATAAACCCACGTTCAGAGTGTACACTA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113693597 41 + 115148730 ATGAAATAGAAATGATAAACCCATGTTCAGGGTGTACACTG
i nomLeu3.chr7b            T 80 C 0
s rheMac3.chr5             183530658 41 + 184069350 GTGAAACAGAACCGATGAACCCACGTTCAGGGTGTCCACTA
i rheMac3.chr5             C 0 T 280
s macFas5.chr5             188914172 41 + 189454096 GTGAAACAGAACCGATGAACCCACGTTCAGGGTGTCCACTA
i macFas5.chr5             C 0 T 200
s papAnu2.chr5             178335965 41 + 178775436 GTGACATGGAAGCGCTGAACCCACGTTCGGGGTGTCCACTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135277408 41 + 135778131 GTGAAACAGAACTGATGAATCCACGTTTGGGGTGTACACTA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87527848 1302 - 129401213 I
e canFam3.chr16             17832903 89 -  59632846 I
e calJac3.chr3                442117  0 + 190850796 C

a score=75483.000000
s hg38.chr4_KI270925v1_alt    138981 39 +    555799 TGAAATAGAACGGATAAACCGACGTTCAGAGTGTACACT
s panTro4.chr4             192833763 39 + 193495092 TGAAATAGAACGGATAAACCGACGTTCAGAGTGTACACT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197936911 39 + 198332218 TGAAATAGAACTGGTAAACCCATGTTCAGAGTGTACACT
i ponAbe2.chr4             C 0 T 121
s nomLeu3.chr7b            113693638 39 + 115148730 TGAAACAGAACCGATAAACCCATGTTCAGAGTGTACACT
i nomLeu3.chr7b            C 0 T 61
s rheMac3.chr5             183530419 39 + 184069350 TGAAATGGAACTGCTGAACCCACATTCGGGGTGTCCACT
i rheMac3.chr5             T 280 C 0
s macFas5.chr5             188914013 39 + 189454096 TGAAACAGAACCGATGAACCCACGTTCGGGGTGTCCACT
i macFas5.chr5             T 200 C 0
s papAnu2.chr5             178336006 39 + 178775436 TGACACGGAAGCGCTGAACCCACGTTCGGGGTGTCCACT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135277449 39 + 135778131 TGAAACAGAACCGATGAACCCACGTTCAGGGTGTATACT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87527848 1302 - 129401213 I
e canFam3.chr16             17832903 89 -  59632846 I
e calJac3.chr3                442117  0 + 190850796 C

a score=1659.000000
s hg38.chr4_KI270925v1_alt    139020 2 +    555799 AT
s panTro4.chr4             192833802 2 + 193495092 AT
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183530458 2 + 184069350 GT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188914052 2 + 189454096 GT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178336045 2 + 178775436 GT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135277488 2 + 135778131 AT
i chlSab2.chr7             C 0 T 80
e mm10.chr8                 87527848 1302 - 129401213 I
e canFam3.chr16             17832903 89 -  59632846 I
e calJac3.chr3                442117 0 + 190850796 C
e nomLeu3.chr7b            113693677 61 + 115148730 T
e ponAbe2.chr4             197936950 121 + 198332218 T

a score=13248.000000
s hg38.chr4_KI270925v1_alt    139022 18 +    555799 GAAATAGAACCGATAAAC
s panTro4.chr4             192833804 18 + 193495092 GAAATAGAACCGATAAAC
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183530460 17 + 184069350 GACACAGAACTGATGAA-
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188914054 17 + 189454096 GAAACAGAACCGATGAA-
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178336047 17 + 178775436 GACACGGAAGCGCTGAA-
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135277410 17 + 135778131 GAAACAGAACTGATGAA-
i chlSab2.chr7             T 80 C 0
e mm10.chr8                 87527848 1302 - 129401213 I
e canFam3.chr16             17832903 89 -  59632846 I
e calJac3.chr3                442117  0 + 190850796 C
e nomLeu3.chr7b            113693677 61 + 115148730 T
e ponAbe2.chr4             197936950 121 + 198332218 T

a score=5514.000000
s hg38.chr4_KI270925v1_alt    139040 3 +    555799 CCC
s panTro4.chr4             192833822 3 + 193495092 CCC
i panTro4.chr4             C 0 I 120
s nomLeu3.chr7b            113693616 3 + 115148730 CCC
i nomLeu3.chr7b            T 61 C 0
s rheMac3.chr5             183530477 3 + 184069350 CCC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188914071 3 + 189454096 CCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178336064 3 + 178775436 CCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135277427 3 + 135778131 TCC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87527848 1302 - 129401213 I
e canFam3.chr16             17832903 89 -  59632846 I
e calJac3.chr3                442117 0 + 190850796 C
e ponAbe2.chr4             197936950 121 + 198332218 T

a score=30973.000000
s hg38.chr4_KI270925v1_alt    139043 37 +    555799 ACGTTCAGAGTGTACACTATGAAATAGAACCAATAAA
s panTro4.chr4             192833945 37 + 193495092 ACGTTCAGAGTGTACACTATGAAATAGAACCGATAAA
i panTro4.chr4             I 120 C 0
s nomLeu3.chr7b            113693619 37 + 115148730 ATGTTCAGGGTGTACACTGTGAAACAGAACCGATAAA
i nomLeu3.chr7b            C 0 T 143
s rheMac3.chr5             183530480  2 + 184069350 AC-----------------------------------
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188914074 37 + 189454096 ACTTTCAGAGTGTACACTGTGAAACAGAACTGATGAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178336067 37 + 178775436 ACGTTCGGGGTGTCCACTGTGACACGGAAGCGCTGAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135277430 37 + 135778131 ACGTTTGGGGTGTACACTATGAAACAGAACCGATGAA
i chlSab2.chr7             C 0 T 223
e mm10.chr8                 87527848 1302 - 129401213 I
e canFam3.chr16             17832903 89 -  59632846 I
e calJac3.chr3                442117  0 + 190850796 C
e ponAbe2.chr4             197936950 121 + 198332218 T

a score=8401.000000
s hg38.chr4_KI270925v1_alt    139080 18 +    555799 CCCCACGTTCAGAGTGTA
s panTro4.chr4             192833982 18 + 193495092 CCCCACGTTCAGAGTGTA
i panTro4.chr4             C 0 C 0
s macFas5.chr5             188914111 17 + 189454096 -CCCACGTTCAGAGTGTA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178336104 17 + 178775436 -CCCACGTTCGGGGTGTC
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87527848 1302 - 129401213 I
e canFam3.chr16             17832903 89 -  59632846 I
e calJac3.chr3                442117  0 + 190850796 C
e chlSab2.chr7             135277467 223 + 135778131 T
e rheMac3.chr5             183530482  0 + 184069350 C
e nomLeu3.chr7b            113693656 143 + 115148730 T
e ponAbe2.chr4             197936950 121 + 198332218 T

a score=4365.000000
s hg38.chr4_KI270925v1_alt    139098 3 +    555799 CAC
s panTro4.chr4             192834000 3 + 193495092 CAC
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113693513 3 + 115148730 CAC
i nomLeu3.chr7b            T 143 C 0
s macFas5.chr5             188914128 3 + 189454096 CAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178336121 3 + 178775436 CAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135277244 3 + 135778131 CAC
i chlSab2.chr7             T 223 C 0
e mm10.chr8                 87527848 1302 - 129401213 I
e canFam3.chr16             17832903 89 -  59632846 I
e calJac3.chr3                442117 0 + 190850796 C
e rheMac3.chr5             183530482 0 + 184069350 C
e ponAbe2.chr4             197936950 121 + 198332218 T

a score=133200.000000
s hg38.chr4_KI270925v1_alt    139101 77 +    555799 TATGAAATAGAACCGATAAATCCACGTTCAGAGTGTACACTATGAAATAGAACCGATAAACCC-ACGTTCAGAGTGTA
s panTro4.chr4             192834003 78 + 193495092 TATGAAATAGAACCGATAAACCCACGTTCAGAGTGTACACTATGAAATAGAACCGATAAACCCCACGTTCAGAGTGTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197936829 77 + 198332218 TATGAAATAGAACCGATAAACCCACGTTCAGGGTGTCCACTATGAAACAGAACCGATAAACCC-ACGTTCAGAGTGTA
i ponAbe2.chr4             T 121 T 40
s nomLeu3.chr7b            113693516 77 + 115148730 TATGAAATAGAACCGATAAACCCATGTTCAGAGTGTACACTATGAAATAGAAATGATAAACCC-ATGTTCAGGGTGTA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183530482 52 + 184069350 -------------------------ATTCGGGGTGTCCACTGTGAAATGGAACCGCTGAACCC-ACGTTCAGGGCGTC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188914131 77 + 189454096 TGTGAAACAGAACCGATGAACCCAGATTCGGGGTGTCCACTGTGAAACAGAACCGATGAACCC-ACGTTCAGGGTGTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178336124 77 + 178775436 TGTGACACGGAAGCGCTGAACCCACGTTCGGGGTGTCCACTGTGACACGGAAGCGCTGAACCC-ACGTTCGGGGTGTC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135277247 77 + 135778131 TGTGAAACAGAACTGATGAATCCACGTTCGGGGTGTACACTATGAAACAGAACTGACGAATCC-ACGTTCAGGGTGTC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87527848 1302 - 129401213 I
e canFam3.chr16             17832903 89 -  59632846 I
e calJac3.chr3                442117  0 + 190850796 C

a score=13135.000000
s hg38.chr4_KI270925v1_alt    139178 6 +    555799 CACTAT
s panTro4.chr4             192834081 6 + 193495092 CACTAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197936866 6 + 198332218 CACTAT
i ponAbe2.chr4             T 40 C 0
s nomLeu3.chr7b            113693593 6 + 115148730 CGCTAT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183530534 6 + 184069350 CACTGT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188914208 6 + 189454096 CACTAT
i macFas5.chr5             C 0 T 160
s papAnu2.chr5             178336201 6 + 178775436 CACTGT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135277324 6 + 135778131 CACTGT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87527848 1302 - 129401213 I
e canFam3.chr16             17832903 89 -  59632846 I
e calJac3.chr3                442117 0 + 190850796 C

a score=105557.000000
s hg38.chr4_KI270925v1_alt    139184 51 +    555799 GAAATAGAACCGATAAACCCACGTTCAGAGTGTACACTATGACATAGAACT
s panTro4.chr4             192834087 51 + 193495092 GAAATAGAACCGATAAACCCACGTTCAGAGTGTACACTATGAAATAGAACC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197936872 51 + 198332218 GAAACAGAACCGATAAACCCACGTTCAGAGTGTACACTATGAAATAGAACT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113693599 51 + 115148730 GAAATAGAAATGATAAACCCATGTTCAGGGTGTACACTGTGAAACAGAACC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183530540 51 + 184069350 GAAACAGAACCGATGAACCCACGTTCGGGGTGTCCACTGTGAAACAGAACC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188914054 51 + 189454096 GAAACAGAACCGATGAACCCACTTTCAGAGTGTACACTGTGAAACAGAACT
i macFas5.chr5             T 160 C 0
s papAnu2.chr5             178336207 51 + 178775436 GACACGGAAGCGCTGAACCCACGTTCGGGGTGTCCACTGTGACACAGAACC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135277330 51 + 135778131 GAAACAGAACTGATGAATCCACGTTCGGGGTGTACACTATGAAACAGAACT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87527848 1302 - 129401213 I
e canFam3.chr16             17832903 89 -  59632846 I
e calJac3.chr3                442117  0 + 190850796 C

a score=44313.000000
s hg38.chr4_KI270925v1_alt    139235 18 +    555799 GATAAACCC-ACGTTCAGA
s panTro4.chr4             192834138 19 + 193495092 GATAAACCCCACGTTCAGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197936923 18 + 198332218 GGTAAACCC-ATGTTCAGA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113693650 18 + 115148730 GATAAACCC-ATGTTCAGA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183530591 18 + 184069350 GATGAACCC-ACTTTCAGA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188914105 18 + 189454096 GATGAACCC-ACGTTCAGA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178336258 18 + 178775436 GATGAACCC-ACATTCGGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135277381 18 + 135778131 GACGAATCC-ACGTTCAGG
i chlSab2.chr7             C 0 I 80
s calJac3.chr3                442117 18 + 190850796 GACAAACCC-ATGTTCAGA
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87527848 1302 - 129401213 I
e canFam3.chr16             17832903 89 -  59632846 I

a score=27708.000000
s hg38.chr4_KI270925v1_alt    139253 9 +    555799 GTGTACACT
s panTro4.chr4             192834157 9 + 193495092 GTGTACACT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197936941 9 + 198332218 GTGTACACT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113693668 9 + 115148730 GTGTACACT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183530609 9 + 184069350 GTGTACACT
i rheMac3.chr5             C 0 I 81
s macFas5.chr5             188914123 9 + 189454096 GTGTACACT
i macFas5.chr5             C 0 I 81
s papAnu2.chr5             178336276 9 + 178775436 GTGTACACT
i papAnu2.chr5             C 0 I 1
s chlSab2.chr7             135277479 9 + 135778131 GTGTATACT
i chlSab2.chr7             I 80 I 1
s calJac3.chr3                442135 9 + 190850796 GTACACACT
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87527848 1302 - 129401213 I
e canFam3.chr16             17832903 89 -  59632846 I

a score=-1240.000000
s hg38.chr4_KI270925v1_alt    139262 1 +    555799 -C
s panTro4.chr4             192834166 1 + 193495092 -C
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197936950 1 + 198332218 -C
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113693677 1 + 115148730 -C
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3                442144 1 + 190850796 A-
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87527848 1302 - 129401213 I
e canFam3.chr16             17832903 89 -  59632846 I
e chlSab2.chr7             135277488 1 + 135778131 I
e papAnu2.chr5             178336285 1 + 178775436 I
e macFas5.chr5             188914132 81 + 189454096 I
e rheMac3.chr5             183530618 81 + 184069350 I

a score=600558.000000
s hg38.chr4_KI270925v1_alt    139263 225 +    555799 TCCTGCTAGGTCAAGTGGCCAGAGTGAGATCC-TTTTTTGTAATGGATGTCATTGACTTCGGGGGTCATTAAAATTTTTAACATggccaggtacaatagctcatgactgcaatgtcagcactttgggaggctgaggtgggaagattgcttgagttcaggagttcctgaccagcctgggcagcatagagagactccatctttatcctc-cacaaaaagg----aaaaaCCAG
s panTro4.chr4             192834167 225 + 193495092 TCCTGCTAGGTCAAGTGGCCAGAGTGAGATCC-TTTTTTGTAATGGATGTCATTGACTTCAGGGGTCATTAAAATTTTTAACATggccaggtacaatagctcatgactgcaatgtcagcactttgggaggctgaggtgggaagattgcttgagttcaggagttcctgaccagcctgggcagcatagagagactccatctttaTCCTC-CACAAAAAGG----AAAAACCAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197936951 225 + 198332218 TCCTGCTAGGTCAAGTGGCCAGAGTGAGATCC-TTTTTTGTAATGGATGTTATTGACTTTGGGGGTTATTAAAATTTTTAACATggccaggtacaatagctcatgactgcaatgccagcactttgggaggctgaggtgggaagattgcttgagttcaggagttcctgaccagcctgggcaacatagagagactccatctttatcctc-cacaaaaagt----aaaaaCCAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113693678 226 + 115148730 TCCTGCTAGGTCAAGTGGCCAGAGTGAGATCCTTTTTTTGTAATGGATGTCATTGGCTTT-GGGGTCATTAACATTTTTAACATAgccaggtacaatagctcatgactgcaatgctagcactttgggaggctgaggtgggaagattgcttgagttcaggagttcctgaccagcctgggcaacatagagagactccatctttaTCCTC-CACAAAAAGT---AAAAAACCAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183530699 223 + 184069350 TCCTGCCAGGCCAAGTGGCCAGAATGAGATCC-TTTTTTGCAATAGATGTCATTGACTTTGGGGGTCATTAACATTTTTAACATCAccaggtacaatagctcatgactgtaatcccagcactttgggaggctaaggtgggaagattgcttgagttcaggagtt-ctgaccagcc-gggcaacatagagagactccatctttatcccc-cgaaaaaagt----aaaaTCCAG
i rheMac3.chr5             I 81 C 0
s macFas5.chr5             188914213 223 + 189454096 TCCTGCCAGGCCAAGTGGCCAGAATGAGATCC-TTTTTTGCAATAGATGTCATTGACTTTGGGGGTCATTAACATTTTTAACATCAccaggtacaatagctcatgactgtaatcccagcactttgggaggctaaggtgggaagattgcttgagttcaggagtt-ctgaccagcc-gggcaacatagagagactccatctttatcccc-cgaaaaaagt----aaaaTCCAG
i macFas5.chr5             I 81 C 0
s papAnu2.chr5             178336286 223 + 178775436 TCCTGCCAGGCCAAGTGGCCAGAGTGAGATCC-TTTTTTGCAATAGATGTCATTGGCTTTGGGggtcattaacatttttaacatcACCAGGTACAATAGCTcatcactgtaatcccagcactttgggaggctaaggtgggaagattgcttgagttcaggagtt-ctgaccagcc-aggcaacatagagagactccatctttatcccc-tgaaaaaagt----aaaatccaG
i papAnu2.chr5             I 1 C 0
s chlSab2.chr7             135277489 222 + 135778131 TCCTGCCAGGCCAAGTGACCAGAGTGAGATCC-TTTTTTGCAATAGATGTCATTGACTTTGGGGGTCATTAACATTTTTAACATCAccaggtacaatagctcatgactgtaatcccagcactttgggaggctaaggtgggaagattgcttgagttcaggagtt-ctgaccagcc-gggcaacatagagagactccatctttaccccc-c-aaaaaagt----aaaaTCCAG
i chlSab2.chr7             I 1 C 0
s calJac3.chr3                442145 214 + 190850796 TACTCCCGGGCCAAGCGGCCG---------TC-ACTTTTGTAATAGATGTCATTGACTTTAGGGGTC---AGAATTTTTCACATggcccggcacagtagttc----ccataatcccagcactttgggaagctaaggtgggaagattgcttgacctcgggagttcctgaccagcctgggtgacattgagagactccatctttatctccaccaaaaaagtaaaaaaaaaAGAG
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87527848 1302 - 129401213 I
e canFam3.chr16             17832903  89 -  59632846 I

a score=12690.000000
s hg38.chr4_KI270925v1_alt    139488 3 +    555799 AAG
s panTro4.chr4             192834392 3 + 193495092 AAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197937176 3 + 198332218 AAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113693904 3 + 115148730 AAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183530922 3 + 184069350 AAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188914436 3 + 189454096 AAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178336509 3 + 178775436 AAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135277711 3 + 135778131 AAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3                442359 3 + 190850796 AAG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17832992 3 -  59632846 AAG
i canFam3.chr16            I 89 C 0
e mm10.chr8                 87527848 1302 - 129401213 I

a score=4126002.000000
s hg38.chr4_KI270925v1_alt    139491 1247 +    555799  
s panTro4.chr4             192834395 1248 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197937179 1247 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113693907 1247 + 115148730  
i nomLeu3.chr7b            C 0 I 1048
s rheMac3.chr5             183530925 1241 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188914439 1241 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178336512 1242 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135277714 1238 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3                442362 1240 + 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87529150 1126 - 129401213  
i mm10.chr8                I 1302 C 0
s canFam3.chr16             17832995 1315 -  59632846  
i canFam3.chr16            C 0 C 0

a score=998433.000000
s hg38.chr4_KI270925v1_alt    140738 267 +    555799 TATTCACAACTTCTAGATCTGAAATATAAAAACCTTAT-CTCCTAGTACATGAAACTGTGCTAATACAATTTATTAAATTAGTTCAACTAGCATTTCCTTCAAAATAATTGACAATAAATTAAACTGGGTG---------CCCCTCTTTTCCATTCTGTGTTCAGCTGCCAAATCTGCTCAGCTTTCTGTGTCTAAAACGCTTACCAGATATGACTCCATTGTGATTAGATGCCTCCATTCCAGTGGACTTTATTAAA-TTAGAATACAAGATAGCTG
s panTro4.chr4             192835643 265 + 193495092 TATTCACAACTTCTAGATCTGAAATATAAAAACCTTAT-CTCCTAGTACATGAAACTGTGCTAATACAATTTATTAAATTAGTTCAACTAGCATTTCATTCAAAATAATTGACAATAAATTAAACTGGGTG---------CCCCTCATTGCCATTCTGTGTTCAGCTGCCAAATCTGCTCAGCTTTCTGTGTCTAAAACTCTTACCAGATATGACTCCATTGTGATTAGATGCCTCCATTCCAGTGGACTTTAT--AA-ATAGAATACAAGATAGCTG
i panTro4.chr4             C 0 M 486
s ponAbe2.chr4             197938426 267 + 198332218 TGTTCACAACTTCTAGATCTGAAATATAAAAACCTTAT-CTCCTAGTACATGAAACTGCACTAATACAATTTATTAAATTAGTTCAACTAGCATTTCCTTCAAAAGAATTGACAATAAATTAAACTGGGTG---------CCCCTCTTTTCCATTCCGTGTTCAGCTGCCAAATCTGCTCAGCTTTCTGTGTCTAAAACTCTTACCAGATAGGACTCCATTGTGATTAGATGCTTCCATTCCAGTGGACTTTATTAAA-TTAGAATACAAGATAGCTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113696202 265 + 115148730 TATTCACAACTTCTAGATC--GAATATAAAAAGCTTGT-CTCCTAGTACATGAAACTGTACTAATACAATTTATTAAATTAGTTCAACTAGCATTTCCTTCAGAAGAATTGACAATAAATTAAACTGGGTG---------CCCATCTTTTCCATTCTGTGTTCAGCTGCCAAATCTGCTCAGCTTTCTGTGTCTAAAACTCTTACCAGATACGACTCCATTGTGATTAGATGCTTCCATTCCAGTGGACTTTATTAAA-TTAGAATATGAGATAGCTG
i nomLeu3.chr7b            I 1048 C 0
s rheMac3.chr5             183532166 267 + 184069350 TATTCACAACTTCTAGATCCGAAATATAAAAACTGTAT-CTCCCAGTACACGAAACTGCACTAATAAAATTTATTAAATTAGTTCAACTAGCATTTCCTTCAAAAGAATTGACAATAAATTAAATTGGGTG---------CCCCTCTTTTCTATTCTGTATTCAGCTGCCAAATCTGCTCAGCTTTCCGTGTCTAAAACTCTTGCGAGATGCGACTCCATTGTGATTAGATTCTTCCATTCCAGTGCACTTTATTAAA-TTAGAATACAAGATAGCTG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188915680 267 + 189454096 TATTCACAACTTCTAGATCCGAAATATAAAAACTGTAT-CTCCCAGTACACGAAACTGCACTAATACAATTTATTAAATTAGTTCAACTAGCATTTCCTTCAAAAGAATTGACAATAAATTAAATTGGGTG---------CCCCTCTTTTCTATTCTGTATTCAGCTGCCAAATCTGCTCAGCTTTCCGTGTCTAAAACTCTTGCGAGATGCGACTCCATTGTGATTAGATTCTTCCATTCCAGTGCACTTTATTAAA-TTAGAATACAAGATAGCTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178337754 267 + 178775436 TATTCACAACTTCTAGATCCGAAATATAAAAACTGTAT-CTCCCAGTACACGAAACTGCACTAATACAATTtattaaattagttcaactagcATTTCCTTCAAAAGAATTGACTATAAGTTAAATTGGGTG---------CCCCTCTTTTCTATTCTGTATTCAGCTGCCAAATCTGCTCAGTTTTCCATGTCTAAAACTCTTACGAGATGCAACTCCATTGTGATTAGATTCTTCCATTCCAGTGCACTTTATTAAA-TTAGAATACAAGATAGCTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135278952 267 + 135778131 TATTCACAACTTCTAGATCTGAAATATAAAAACCTTAT-CTCCCAGTACACGAAACTGCACTAATACAATTTATTAAATTAGTTCAACTAGCATTTCCTTCAAAAGAATTGACAATAAATTAAATTGGGTG---------CCCCTCTTTTCTATTCTGTATTCAGCTGCCAAATCTGCTCAGTTTTCCATGTCTAAAACTCTTACGAGATGCGACTCCATTGTGATTAGATTCTTCCATTCCAGTGCACTTTATTAAA-TCAGAATACAAGATAGCTG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3                443602 255 + 190850796 TATTCGCAACT---------GAAATACAAAAACCTTAT-CTGTTAGTACGTGAAACTGCACTAATACAATTTATTAAATTGGTTCAACTAGCATTTCTTTCAAAAGAATTGACAATAAATTAAATTGGGTG---------CATGTCTTTTCCATTCCGTGTTCAGCAGCGGA----TCTCAGCTTTCTATGTCTAAAACTCTCACTAAATAGCGCTCCATTGTGGTTAGATTCTTCCATTCCAGTGGACTTTATTAAATTTAGAATCCAAGATAGCTG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87530276 261 - 129401213 --TCAACCATTTCCA-ATCTGAAATTTAAGAACCCCACATTCCTACTCCATGAAACAGTGCTAATAACACTTATGAAATTAGTTCAACTGCCATTTTCTTCAAAAGTATTGACAAAAATTTTGGTTGGGTATAGCTATTTTTTCTATTTTCTATTTTTTATTTAGCTGCCAAATCTG------------TGTTTACAA-TTTTACTAGCTATTCCAGCATTCTAATTATGTTCTTCTATGCCAGTGGACTGTATTAAT-ATAAAATATCAGTTAGCTA
i mm10.chr8                C 0 C 0
s canFam3.chr16             17834310 268 -  59632846 TCTTTACAACTTCTAGATCTGAAATATGAAAATTTTATGGTCCGATTCCATGAAATTGTACTAATACAATTTATTAAATTAGTTCAACCAGCTTTGCCTTCAGAAGGATTGGCAATAAATTAATTTGGGTG---------CGCATCTTTGCTATTCTGTATTTAGCTGCCAGATCTGCTCAACTTTCTGTGTCTGAAACTCTTACCAGATACTATTCCATTCTGATTAGATTCTCCTATTCCAGTAGACTGTATTAAT-TTATAATGTTAGACAGTTG
i canFam3.chr16            C 0 C 0

a score=32844.000000
s hg38.chr4_KI270925v1_alt    141005 13 +    555799 TCACTCTCTGAAG
s ponAbe2.chr4             197938693 13 + 198332218 TCGCTCTCTGAAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113696467 13 + 115148730 TCACTCTCTGAAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183532433 13 + 184069350 TGACTATCTGAAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188915947 13 + 189454096 TGACTATCTGAAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178338021 13 + 178775436 TCACTATCTGAGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135279219 13 + 135778131 TCACTGTCTGAAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3                443857 13 + 190850796 TCACTATCTGAAG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87530537 13 - 129401213 CAACTATGTGAAG
i mm10.chr8                C 0 C 0
s canFam3.chr16             17834578 13 -  59632846 CTGCTATCTGAAA
i canFam3.chr16            C 0 C 0
e panTro4.chr4             192835908 486 + 193495092 M

a score=747388.000000
s hg38.chr4_KI270925v1_alt    141018 212 +    555799 GATACAAGTAAGAGCAAGTCTTGAACGAGCCTCTTTAAACCATCACGATATAAATAGGCCATATTTCCAGGGTGACAGAGCAAGTAAAGGATTTCAAAGATGAGTAGGGAAAGCCCAAGTTAGCTAATAAATGACGTTCATTCATTAGGAAATGGTATCTGCAAACTATTCA---AAA-ATC-----CCCTTCAC-TAAATAAGTCATGGACTGCGTTTCTG
s panTro4.chr4             192836401 212 + 193495092 GATACAAGTAAGAGCAAGTCTTGAACGAGCCTCTTTAAACCATCACGATATAAATAGGCCATATTTCTAGGGTGACAGAGCAAGTAAAGGATTTCAAAGATGAGTAGGGAAAGCCCAAGTTAGCTAATAAATGACGTTCATTCATTAGGAAATGGTATCTGCAAACTATTCA---AAA-ATC-----CCCTTCAC-TAAATAAGTCATGGACTGCGTTTCTG
i panTro4.chr4             M 486 C 0
s ponAbe2.chr4             197938706 212 + 198332218 GATACAAGTAAGAGCAAGTCTTGAACGAGCCTCTTTAAACCATCACGACATAAATAGGCCATATTTCTAGGGTGACAGAGCAAGTAAAGGATTTCAAAGATGAGTAGGGAAAGCCCAAGTTAGCTAATAAATGACGTTCATTCATTAGGAAATGGTATCTGCAAATTATTCA---AAA-ATC-----CCCTTTAC-TAAATAAGTCATGGACTGTGTTTCTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113696480 211 + 115148730 GATACAAGTAACAGAAAGTCTTGAAGGAGCCTCTTTAAACCATCACGACGTAAATAGGCCATATTTCTAGGGTGACAGAGCAAGTAAA-GATTTCAAAGATGAATAGGGAAAGCCCACGTTAGCTAATAAATGACGTTCATTCATTAGGAAATGGTATTTGCAAACTATTCA---AAA-ATC-----CCCTTTAC-TAAATAAGCCATGGACTGTGTTTCTG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183532446 212 + 184069350 GATACAAATAAGAGCAAGTATACAATGAGCCTCTTGAAACCAGCCCGACATAAATAGACCATATTTCTAGGGTAACAGAGCAAGTAAAGGATTTCAAAGATGAACAGGGAAAGCCCAAGTCAGCTAATAAATGACCTTCATTCATCAGGAAATGGTATTTACAAATTATTCA---AAA-ATC-----GCCTTTAC-TAAATAAGTTGTGGGCTACGTTTCTG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188915960 212 + 189454096 GATACAAATAAGAGCAAGTATACAATGAGCCTCTTGAAACCAGCCCGACATAAATAGACCATATTTCTAGGGTGACAGAGCAAGTAAAGGATTTCAAAGATGAACAGGGAAAGCCCAAGTCAGCTAATAAATGACCTTCATTCATCAGGAAATGGTATTTACAAATTATTCA---AAA-ATC-----GCCTTTAC-TAAATAAGTTGTGGGCTACGTTTCTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178338034 212 + 178775436 GATACAAATAAGAGCAAGTATAGAATGAGCCTCTTGAAACCAGCCCGACATAAATAGACCATATTTctagggtgacagagcaagtaaAGGATTTCAAAGATGAACAGGGAAAGCCCAAGTCAGCTAATAAATGACCTTCATTCATCAGGAAATGTTATTTACAAATTATTCA---AAA-ATC-----GCCTTTAC-TAAATAAGTTGTGGGCTACATTTCTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135279232 212 + 135778131 GATACAAATAAGAGCGAGTATAGAATGAGCCTCTGGAAACCAGCCCAACATAAATAGACCATATTTCTAGGGTGACAGAGCAAGTAAAGGATTTCAAAGATGAACAGGGAAAGCCCAAGTTAGCTAATAAATGACCTTCATTCATCAGGAAATGATATTTACAAATTATTCA---AAA-ATC-----GCCTTTAC-TAAATAAGTTGTGGGCTACGTTTCTG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3                443870 210 + 190850796 GATACAAATAAGGGCAAGTATAGAATGAACCTCTTTAAACCAGCATGGCATAAATTGGCCATCTTTCCAGGGTGACAGAGCAAGTAAAGGATTTCAGTGATGAGTAGAGAAAGCCAAAAAGAGCCAATTAATGATGTTCATTAATCAGGAAATGGTATTTCCAAATTACTC-----AA-ATC-----CCCTTTAC-TAAATAAGTGATGGGCTACGtttttc
i calJac3.chr3             C 0 I 317
s mm10.chr8                 87530550 215 - 129401213 GATTCAAACAAGAGTC--TATATAATTAGTCTCTCTAACCCAGCAAGACATAAACAGTTTCCCTTTCTGGAATACCA----CAGTAGAGGATATCAGAGATGAATAGTGATAGCCTAAGATTTTAAATAAATTATCTCTATTCATTAACAAACAGTATTTACAAATTATCCATTGTAA-GTCATACGACatatacatgtatatgtgtatgtatatgtgtatg
i mm10.chr8                C 0 I 11
s canFam3.chr16             17834591 209 -  59632846 GATACACATAAGAGTAAATATATAATTAGCCTCTTTAAACCAGCAGGACATAAACAGGCCATATTTCTAGGGTGACGGAGCAAGTGAAGAAATTCAAAGATGAATAGGGAAAGCCAAAGTTAGCTAATAAATGAT----ATTCATTGGTAAATGGTATTTACAAATCATTCG---GAATCTC-----CCTCTTGC-TAAATAAGTCATAGGATATGGTTTTG
i canFam3.chr16            C 0 C 0

a score=3118776.000000
s hg38.chr4_KI270925v1_alt    141230 808 +    555799  
s panTro4.chr4             192836613 808 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197938918 802 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113696691 808 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183532658 800 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188916172 800 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178338246 802 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135279444 798 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3                444397 810 + 190850796  
i calJac3.chr3             I 317 C 0
s mm10.chr8                 87530776 789 - 129401213  
i mm10.chr8                I 11 C 0
s canFam3.chr16             17834800 774 -  59632846  
i canFam3.chr16            C 0 I 196

a score=442356.000000
s hg38.chr4_KI270925v1_alt    142038 140 +    555799 AAACTAAGAAAATA-------------------------------------TAGATATTGGACACTCATTATGTTCACAGCATTGCAGGGACTACAAGAAAACA-TAATACATGGGCTTCCAAATAGCTCATAAACAGTTTACTATGCAACACATAAAAAATGTTTACAATAACATAT
s panTro4.chr4             192837421 140 + 193495092 AAACTAAGAAAATA-------------------------------------TAGAtattggacactcactatgttcacagcattgcagggactacaagaaaaca-taatacatgggcttccaaatagctcataaacagtttactatgcaacacataaaaaatgtttacaataACATAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197939720 140 + 198332218 AAACTAAGAAAATa-------------------------------------tatgtattggacactcactatgttcacagcgttgcagggactacaagaaaaca-taatacatgggcttccaaatagcttataaaccgtttaccatgcaacacgtaaaaaatgtttacaataACATAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113697499 140 + 115148730 AAACTAAGAAAATa-------------------------------------tatgtcttggacactcactatgttcacagcactgcagggactacaagataaca-taatacatgggcttccaaatagctcataaacagtttacaatgcaacacgtaaaaaatgtttacaataACATAC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183533458 140 + 184069350 AAACTAAGAATATA-------------------------------------TATTTATTGAACACTCACTATGTTCACAGCATTGCAGGGACTACAAGAAAACG-TAATACGTGGGCTTCCAAATAGCTCATAAACAGTTTACAATGCAACACGTAAAAAATGTTTACAGGAACATAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188916972 140 + 189454096 AAACTAAGAATATA-------------------------------------TATTTATTGAACACTCACTATGTTCACAGCATTGCAGGGACTACAAGAAAACG-TAATACGTGGGCTTCCAAATAGCTCATAAACAGTTTACAATGCAACACGTAAAAAATGTTTACAGGAACATAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178339048 140 + 178775436 aaactaagaaaata-------------------------------------tatgtgttgAACTCTCACTATGTTCACAGCATTGCAGGGACTACAAGAAAACG-TaatatatgggcttccaaatagctcATAAACAGTTTACAATGCAACACGTAAAAAATGTTTACAGGAACATAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135280242 140 + 135778131 AAACTAAGAAAATT-------------------------------------TATGTATTGAACACTCACTATGTTCACAGCATTGCAGGGACTACAAGAAAACA-TAATACGTGGGCTTCCAAATAGCTCATAAACAGTTTACAATGCAACACGTAAAAAATGTTTACAGGAACACGT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3                445207 140 + 190850796 AAACTAAGAAAAAA-------------------------------------TATTTATTAAACACTCATTATATTCACAGCATTGC-TGGACTATAAGTAAACATTAATACATGGGCTTCCGAATAGCTCAGAAACAGTTTACAAGGCAACACGTAAAAAATATTTACAATAAAATAT
i calJac3.chr3             C 0 I 322
s mm10.chr8                 87531565 128 - 129401213 G----ATAAATATA-------------------------------------TATTT-TTGAGCACCTTCTGTGTGCTCAGAATTAAAGTAGCTATAAATATTTG-TAATATTTGGGA--CCCATAAACTAATAATTAGTTTGAAAGACAA---AGGAAAGATATCCAGTGTAGTAC--
i mm10.chr8                C 0 C 0
s canFam3.chr16             17835770 178 -  59632846 AaagtaaataaataaataaataaataTTTTTTTAAAAAAGAAAGAAAAAAGTAGATATTGAACACCCACTCTATGCATAGTACTGCAGGAGTTCCAAAGAAGCATTAATACATCTGTCCTCGAATAGCTTATAAATAGTTAGGAAGGCAAGACTAAAAAAAGATTTACAGTATAACAC
i canFam3.chr16            I 196 C 0

a score=861778.000000
s hg38.chr4_KI270925v1_alt    142178 239 +    555799 AAGAATATGAGACCTGGTTGTTCATCTGGAACTAAAACAGATAAATGAAATCAGAGAGAATCCTCATAACTATTTTAATCTAATGATTTACTTCAGCCTTTTCTCCTACCAAAACTTTCATCAGAACTCCTAATAGTGTAAGAAATATGACCTGGTATTTTCACTGCTTCTTTCTAG----------------------------TTCTTGTAAGAAGA------ATCAGAGAAATTA------TTCAAC-------------------------CAGTCCCTGATGTTGTA---------------AGGGCTGTTTCC
s panTro4.chr4             192837561 239 + 193495092 AAGAATATGAGACCTGGTCGTTCATCTGGAACTAAAACAGATAAATGAAATCAGAGAGAATCCTCATAACTATTTTAATCTAATGATTTACTTCAGCCTTTTCTCCTACCAAAACTTTCATCAGAACTCCTAATAGTGTAAGAAATATGACCTGGTATTTTCACTGCTTCTTTCTAG----------------------------TTCTTGTAAGAAGA------ATCAGAGAAATTA------TTCAAC-------------------------CAGTCCCTGATGTTGTA---------------AGGGCTGTTTCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197939860 239 + 198332218 AAGAATATGAGACCTGGTTGTTCATCTGGAACTAAAACAGACAAATGAAATCAGAGAGAATCCTCATAACTACTTTAATCTAATAATTTACTTCAGCCTTTTCTCCTACCAAAATTTTCATCAGAACTCCTAATAGTGTAAGAAATATGACCTGGTATTTTCACTGCTTCTTTCTAG----------------------------TTCTTGTAAGAAGA------ATCAGAGAAATTA------TTCAAC-------------------------CAGTCCCTGATGTTGTA---------------AGGGCTGTTTCC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113697639 238 + 115148730 AAGAATACGAGACCTGGTTGTTCATCTGGAAC-AACCAGGATAAATGAAATCAGAGAGAATCCTCATAACTATTTTAATCTAATAATTTACTTCAGCCTTTTCTCCTACCAAAACTTTCATCAGAACTCCTAATAGCATAAGAAATATGACCTGGTATTTTCACTGCTTCTTTCTAG----------------------------TTCTTGTAAGAAGA------ATCAGAGAAAGTA------TTCAGC-------------------------CAGTCCCTGATGTTGTA---------------AGGGCTGTTTCC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183533598 239 + 184069350 AAGAATATGAGACCTGATTGTTCATCTGGAACTAAAACAGATAAACGAAATCAGGGAGAATCTTCCTAACTATTTTAATCTGATAATTTACTTCAGCCTTTTCTGCTACCAAAACTTTCATCAGAACTCCTAATAGTATAAGAAATATGACCTGGTATTTTCACCGCTTCTTTCTAG----------------------------TTCTTGTAAGAAGA------GTCAGATAAATTA------TTCAAC-------------------------CAGTCCCTAATGTTGTT---------------AGGGTTGTTTCC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188917112 239 + 189454096 AAGAATATGAGACCTGATTGTTCATCTGGAACTAAAACAGATAAACGAAATCAGGGAGAATCTTCCTAACTATTTTAATCTGATAATTTACTTCAGCCTTTTCTGCTACCAAAACTTTCATCAGAACTCCTAATAGTATAAGAAATATGACCTGGTATTTTCACCGCTTCTTTCTAG----------------------------TTCTTGTAAGAAGA------GTCAGATAAATTA------TTCAAC-------------------------CAGTCCCTAATGTTGTT---------------AGGGTTGTTTCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178339188 239 + 178775436 AAGAACATGAGACCTGGTTGTTCATCTGGAACTAAAACAGATAAACGAAATCAGAGAGAATCTTCCTAACTATTTTAATCTGATAATTTACTTCAGCCTTTTCTGCTACCAAAACTTTCATCAGAACTCCTAATAGTGTAAGAAATATGGCCTGGTATTTTCAtcgcttctttctag----------------------------ttcttgtAAGAAGA------GTCAGATAAATTA------TTCAAC-------------------------CAGTCCCTAATGTTGTT---------------AGGGTTGTTTCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135280382 239 + 135778131 AAGAATATGAGACCTGGTTGTTCATCTGGAACTAAAACAGATAAACGAAATCAGAGAGAATCTTCCTAACTGTTTTAATCTAATAATTTACTTCAGCCTTTTCTGCTACCAAAACTTTCATCAGAACTCCTAATAGTGTAAGAAATATGACCTGGTATTTTCACCGCTTCTTTCTAG----------------------------TTCTTGTAAGAAGA------ATCAAAGAAATTA------TTCAAC-------------------------CAGTCCCTAATGTTGTA---------------AGGGTTGTTTCC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3                445669 239 + 190850796 aagaaTAGGAGACCTGGTTGTTCATCTGGAACTAAAACAGATAAATGCAGTCAGAGAGAATCTTCATAACTCTTTTAATCTGACAATTTACTTCAGTCTTTTCTCTTACCAAAACTTTCATCAGAACTTCTAATAGTATAAGACATGTGACTTGGTATTTTCAGTGCTTCTTTCTAG----------------------------TTCTTACAAAAATA------ATCTGAGAAATTA------TTCAAC-------------------------CAGTCCCTGATGTTTTA---------------AGGGCTGTTTCC
i calJac3.chr3             I 322 C 0
s mm10.chr8                 87531693 315 - 129401213 AGGAATATGACACTCAAATCCTCAGGTGGAACAAAAACAGATCAATGAGATAGGAGATAAATTTTAGAGGTATTTTAATCTCAAAATTCTTTCATGCCTTTAACCCTACC-AAACTGTCACCAAAACCACTGATACT---AAAACTATGAGCTGCTGTACTAACTGCTTCTTCTAAGAATACTTTGATAAATAGCCCAACGGTCAGTCTAGTATGAAGGCATGGCATCCTATAGATcagggattctcaaccttcagaacctgtgacactttaacacagttctccatattgtactgactcccaactataaaattatttct
i mm10.chr8                C 0 I 116
s canFam3.chr16             17835948 233 -  59632846 CAGAATGTGAGACCTGACTGTTCATAGGCAACTAAAACAGACAAATGAAATCAAAGATAGTCTTTATGACTGTTTTAATCTAA----TTTCTTCAGACTTTTCCACTACTAAACTTTTTATCAGAATCACTGATAATATAAGAAATATATACTGGTATTTTTATTGCTTCTTTCTAC----------------------------TTCTTTTAAGAAGA------ATCAGGACAATTA------CATAAC-------------------------CAGCCTCTAGTGTTTAC---------------AGGGCTTTCT--
i canFam3.chr16            C 0 C 0

a score=865281.000000
s hg38.chr4_KI270925v1_alt    142417 268 +    555799 TTTAGATGATGGCAGAATGCACATATCCCATAAACCACTGTAAGCAGAGAAACTACCTTAtgtaac-aagcacagagagggg----actttcctggttcttggagatgctgttatgatcccaaaataaaactaaagcactgattagctccctactctaaagatgagggcctcaaac------ccctggaacttcctggcagggcttcgtaa----gaggcagcagaactggcaatcctaccattaaccaccacccaccccACCAGAACTTCCCCAGCCCACAA
s panTro4.chr4             192837800 268 + 193495092 TTTAGATGATGGCAGAATGCACATATCCCATAAACCACTGTAAGCAGAGAAACTACCTTATGTAAC-AAGCACAGAGAGggg----actttcctggttcttggagatgctgttatgatcccaaaataaaactaaagcactgattagccccctactctaaagatgagggcctcaaac------ccctggaacttcctggcagggcttcgtaa----gaggcagcagaactggcaatcctaccattaaccaccacacacccCACCAGAACCTCCCCAGCCCACAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197940099 267 + 198332218 TTTAGATGATGGCAGAATGCACATGCCCCATAAACTGTTGTAAGCAGAGAAACTACCTTATGTAAC-AAGCACAGAGAGGGG----ACTTTCCTGGTTCCTGGAGATGTGGTTATGATCCCAAAATAAAACTAAAGCACTGATTAGCCCCCTACTCTAAAGATGAGGGCCTCAAAC------CCCTGGTACTTCCTGGCAGGGCTTCTTAA----GAGGCAGCAG-ACTGGCAATCCTACCATTAACCACCACCCACCCCACCAGAACCTCCCCAGCCCACAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113697877 268 + 115148730 TTTAGATGATGGCAGAATGCACATACCCCATAAACTACTGTAAGCAGAGAAACTACCTTATGTAAC-AAGCACGGGGAGGGG----ATTTTCCTGGTTCCTGGAGATGCACTTATGATCCCAAAATAAAACTAAAGCACTGATTAGCCCCCTACTCTAAAGATGAGGGCCTCAAAC------CCCTGGTACTTCCTGGCAAGGCTTCGTAA----GAGGCAGCAGATCTGGCAATCCTACCATTAACCACCACCCACCCCACCAGAACCTCCCCAGCCCGCGA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183533837 267 + 184069350 TTTAGATGGTGGTAGAATGCACA-ACCCCATAAACTCTTGTAAGCAGAGAAACTACCTTACGCCAC-AAGCACCgagagggg----attgtcctggttcctggagatgtggttatgatcccagaataaaacgaaagcactgattaaccctctgctgtaaagatgagggcctcaaac------gcctggcacttcccagcagggcttcctaa----gaggcagcagagctggcaatcctacctttaaccgccacccacTCCACCGGAACCTCCCCAGCCTACAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188917351 267 + 189454096 TTTAGATGGTGGTAGAATGCACA-ACCCCATAAACTCTTGTAAGCAGAGAAACTACCTTACGCCAC-AAGCACCgagagggg----attgtcctggttcctggagatgtggttatgatcccagaataaaacgaaagcactgattaaccctctgctgtaaagatgagggcctcaaac------gcctggcacttcccagcagggcttcctaa----gaggcagcagagctggcaatcctacctttaaccgccacccacTCCACCGGAACCTCCCCAGCCTACAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178339427 267 + 178775436 TTTAGATGGCGGCAGAATGCACA-ACCCCATCAACTCTTGTAAGCAGAGAAACTACGTCACGCCAC-AAGCACCGAGAGGGG----ATTGTCCTGGTTCCTGGAGATGTGGTTATGATCCCAGAATAAAACGAAAGCACCGATTAACCCTCTGCTGTAAAGATGAGGGCCTCAAAC------GCCTGGCACTTCCCAGCAGGGCTTCCTAA----GAGGCAGCAGAGCTGGCAATCCTACCTTTAACCGCCACCCACTCCACCGGAACCTCCCCAGCCTACAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135280621 266 + 135778131 TTTAGATGGTGGCAGAATGCACA-ACCCCATCAACTCTTGTAAGCAGAGAAACTACCTTACGTCAC-AGGCACAGGGAGGGG-----ttgtcctggttcctggagatgtggttatgatcccagaataaaacgaaagcactgattaaccccctgctctaaagatgagggcctcaaac------gcctggcacttcccagcagggcttcctaa----gaggcagcagagctggcaatcctacctttaaccaccacccacTCCACCGGAACCTCCCCAGCCTACAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3                445908 261 + 190850796 TTTAGATGACGGCAGAATGCACATACCCCATAAACTATTGTAAGCGGAGAAGTTATCTTACATAAC-AAGCCCAGAGAGGGA----ATTTTCCTGGTTCGTAGAGATGTGGCTTTGACCCCAAAATAGAACTAAAGCACTGATTGGCCCTTCA-TCTAAAGATGAGTGCCTCGAAC------CCCTGGTACTTCCTGGCAGGACTTCCTAA-----AGGCAGCAGAACTGCCAATCCTACCATTAACCACTACC----CCACCGGAACCTCCCCA-TCTACAA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87532124 249 - 129401213 TTGAGATCATGGTATAGTGGACAGACTCCATAAACTATTATAAGCAGAAAAGCTACCATAGGTATA-AGCTGCTGTGTGGAATGTCATTTTTCTGAT------------GGTTATGCTCTAAATATGAAA-GAAAGCACAGATTACATCCTTA-------------AGACTCAAGCTGATTACCCTGGT--CTCCTACCAAAACTCCCTTACCATTTGGCAGCAGAA-TGGAACTGTGATCACAAATC----CCTACTTCTTGGAAACCTGGCCAGTCTACAG
i mm10.chr8                I 116 I 349
s canFam3.chr16             17836181 254 -  59632846 TTTAGATGATGGTATTATGGACATACATCATAAACTGTTGTAAGCAGATGAACTACCTTAtataataaagtgctgagtgaga----attttcttggttgctagagat--ggctaaagcccccaaataaaactaagctattaataaatcccctactttaaaaatgaatacctgatct------ccctggtacttgctggcagagcttactac----gaagcagcagaactggcaatactaccaTTAATCATCAT-------------ACTATCTTATCTTACGA
i canFam3.chr16            C 0 C 0

a score=595655.000000
s hg38.chr4_KI270925v1_alt    142685 221 +    555799 AGGCAACCAAAGAGGATGAGTTCCCCTTTAGAGCAATGAGGAGT-CAATGTACTAATTCTCAGCAAGGCAGGAAGGCTTTGAATCTGATGGAG--CACAGGAAAGGGAAGCCTGAACATCATTACTTGGCTTGATACTCGCAC--------AGATGGAGGTGCAGCTACTGCTG-CCCAGGGCAGAGCTGGATGGGAGAGCCCCAG-GAGAGCTTGGCCTCTACAACCCGAGAG
s panTro4.chr4             192838068 221 + 193495092 AGGCAACCAAAGAGGATGAGTTCCCCTTTAGAGCAATGAGGAGT-CAATGTACTAATTCTCAGCAAGGCAGGAAGGCCTTGAATCTGATGGAG--CACAGGAAAGGGAAGCCTGAACATCATTACTTGGCTTGATACTCGCAC--------AGATGGAGGTGCAGCTACTGCTG-CCCAGGGCAGAGCTGGATGGGAGAGCCCCAG-GAGAGCTTGGCCTCTAAAACCCGAGAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197940366 221 + 198332218 AAACAACCAAAGAGGATGAGTTCCCCTTTAGAGCAATGAGGAGT-CAACATACTAATTCTCAGCAAGGCAGGAAGGCCTTGAATCTGATGGAG--CACAGGAATGGGAAGCTGGAACATCATTACTTGGCTTGATACTCGCCC--------AGATGGAGGTGCAGCTACTGCTG-CCCAGGGCAGAGCTGGATGGGAGAGCCCCAG-GAGAGCTTGGCCTCTACACCCCGACAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113698145 212 + 115148730 AAGCAGCCAAAGAGGATGAGATCCCCTTTAGAGCAATGAGGAGT-CAATGTACTAATTATCAGCAAGGCAG---------GATTCTGATGGAG--CACAGGAATGAGAAGCTGGAACATCATTACTTGGCTTGATACTTGCAC--------AGATGGAGGTGCAGCTACTGCTG-CCCAGGTCAGAGCTGGATGGGAGAGCCCCGG-GAGAGCTTGACCTCTACACCCCGAGAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183534104 221 + 184069350 AGGCAACCAAAGAGGATGAGTCCGTCTTTCCAGCAGTGGGGAGA-GGATGCGCTGACCCTCAGCACGGGAGGAAGGCTGTGACTCTGAGGGAGCACACAGGAGTGGGAAGCCGGAGTACCGTTACTTGGCTTGATACTTGCAC--------AGATGCAGGTGCAGCTATTGTTG-CCCAGGGCAGAGCTGGACGGGGGAG--CCAG-GAGAGCTTGGCCTCTACACCCTGAGAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188917618 221 + 189454096 AGGCAACCAAAGAGGATGAGTCCGTCTTTCCAGCAGCGGGGAGA-GGATGCGCTGACCCTCAGCACGGGAGGAAGGCTGTGACTCTGAGGGAGCACACAGGAGTGGGAAGCCGGAGTACCGTTACTTGGCTTGATACTTGCAC--------AGGTGCAGGTGCAGCTATTGTTG-CCCAGGGCAGAGCTGGACGGGGGAG--CCAG-GAGAGCTTGGCCTCTACACCCTGAGAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178339694 222 + 178775436 AGGCAACCAAAGAGGATGAGTCCCTCTTTCCAGCAGTGGGGAGA-GGATGCGCTGACTCTCAGCACGGGAGGAAGGCTGTGACTCTGAGGGAGCACACAGGAGTGGGAGGCCGGAGTATCGTTACTTGGCTTGATACTTGCAC--------AGATGGAGGTGCAGCTATTGTTG-CCCAGGGCAGAGCTGGACGGGAGAG-CCCAG-GAGAGCTTGGCCTCTACACCCTGAGAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135280887 221 + 135778131 AGGCAACCAAAGAGGATGAGTCCCTCTTTCCAGCAGTGGGGAGA-GGATGCGCTGATTCTCAGCACGGGAGGAAGGCTGTGACTCTGAGGGAGCACACAGGAATGGGAAGCCGGAGTATCGTTACTTGGCTTGATACTTGCAC--------AGATGGAGGTGCAGCTATTGCTG-CCCAGGGCAGAGCTGGATGGGAGAG--CCAG-GAGAGCTTGGCTTCTACACCCTGAGGG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3                446169 224 + 190850796 AGGCAACTAACGAGGATGCGATCCTCTTCAGAGCAATGGAGAGAGCAAGGTATTAATTCTCAGCAAGGGAGGAAGGACTTGCATCTGATGGAACACGCAGGAACGGGAAGCTGGAATATCAGCACTTGGCTTGACGCTGGCAC--------AGATGGAGGTGCAGCTACAGCTG-CCCGGGGCAGAGCTGGATGGGAGAGCCCCAG-GAGATCTTGGCCTCTACACCCTGAGAG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17836435 169 -  59632846 -----------------------------------------------------------------AGAGAGGAGGAGCTTAAGGTTAAGGGAGTATGCAAGAATGGGAATATAGGCGATCATTCTTTGGCTTGATACTTCCACAGTGAAGAAGCTTCAGGTCCATCTACTGCTACCCCAGGACAGAGCTGGATGGGAGAGCCCCTGTGAGAGCTTGACATCCTCACCCAAACAT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87532373 349 - 129401213 I

a score=81931.000000
s hg38.chr4_KI270925v1_alt    142906 24 +    555799 CGTGAGCAC----------------ATGTGAACATAAAGA
s panTro4.chr4             192838289 24 + 193495092 CGGGAGCAC----------------ATGTGAACATAAAGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197940587 24 + 198332218 TGGGAGCAC----------------ATGTGAACATAAAGG
i ponAbe2.chr4             C 0 I 14
s nomLeu3.chr7b            113698357 24 + 115148730 TGGGAGCAC----------------ATGTGAACATAAAGG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183534325 24 + 184069350 TGGGAGCAC----------------GTGTGAACATGAAGG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188917839 24 + 189454096 TGGGAGCAC----------------GTGTGAACATAAAGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178339916 24 + 178775436 TGGGAGCAA----------------GTGTGAACATAAAGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135281108 24 + 135778131 TGGGAGCAC----------------GTGTGAACATAAAGG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3                446393 24 + 190850796 TGGGGACAC----------------ACGTGAACCTAAAGG
i calJac3.chr3             C 0 I 1
s mm10.chr8                 87532722 24 - 129401213 TGGGAACAC----------------ATACAAACTTAAAGA
i mm10.chr8                I 349 C 0
s canFam3.chr16             17836604 39 -  59632846 TAGGAGCACTTTATACTCCTCACATATGTGAGTATAAAG-
i canFam3.chr16            C 0 C 0

a score=18196.000000
s hg38.chr4_KI270925v1_alt    142930 11 +    555799 TGACTGCTAAT
s panTro4.chr4             192838313 11 + 193495092 TGACTGCTAAT
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113698381 11 + 115148730 TGACTGTTAAT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183534349 10 + 184069350 TGACTGTTCA-
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188917863 10 + 189454096 TGACTGTTCA-
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178339940 11 + 178775436 CGACTGTTCAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135281132 11 + 135778131 TGACTGTTCAT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3                446418 11 + 190850796 GAACTGTTAAT
i calJac3.chr3             I 1 C 0
s mm10.chr8                 87532746 11 - 129401213 AGACTAATAAT
i mm10.chr8                C 0 C 0
s canFam3.chr16             17836643  7 -  59632846 ----TGCTCAT
i canFam3.chr16            C 0 C 0
e ponAbe2.chr4             197940611 14 + 198332218 I

a score=357099.000000
s hg38.chr4_KI270925v1_alt    142941 112 +    555799 TTCTCAGCTAGAGAGCAAGCCAACGGGATCTGATGGG-ACATGTTACATCCTACAGGAAAGAAGGGGATGGGGTCATTCCCTGTCACAGCTTCCCACGGCACTGGGAGGGCCT
s panTro4.chr4             192838324 112 + 193495092 TTGTCAGCTAGAGAGCAAGCCAACGGGATCTGATGGG-ACATGTTACAGCCTACAGGAAAGAAAGGGATGGGGTCATTCCCTGTCACAGCTTCCCACGGCACTGGGAGGGCCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197940625 112 + 198332218 TTCTCAGCTAGCGAACAAGCCAACGGGATCTGATGGG-ACATGTTACAGCCTACAGGAAAGAAAGGGATGGGGTCATTCCCTGTCACAGCTTCCCACGGCACTGGGAGGGCCT
i ponAbe2.chr4             I 14 C 0
s nomLeu3.chr7b            113698392 112 + 115148730 TTCTCAGCTAGAGAGCAAGCCAACGAGATCTGATGGG-ACATGTTACAGCCTACAGGAAAGAAAGGGATGGGGTCATTCCCTGTCACAGCTTCCCATGGCACTGGGAGGACCT
i nomLeu3.chr7b            C 0 I 15
s rheMac3.chr5             183534359 110 + 184069350 TTATCAGCTAGAGAGCAAGCCAACAGTATCTGACAGG-AC--GTTCCAGCCTACAGGAAAGAAAGGCATGGGGTCATTCCCTGTCCCAGCTTCCCACCGCACTGGGAGGGTCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188917873 110 + 189454096 TTATCAGCTAGAGAGCAAGCCAACAGTATCTGACAGG-AC--GTTCCAGCCTACAGGAAAGAAAGGCATGGGGTCATTCCCTGTCCCAGCTTCCCACCGCACTGGGAGGGTCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178339951 112 + 178775436 TTATCAGCTAGAGAGCAAGCCAACAGTATCTGACGGG-ACATGTTCCAGCCTACAGGAAAGAAAGGCATGGGGTCATTCCCTGTCACAGCTTCCCACGGCACTGGGAGGGCCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135281143 110 + 135778131 TTATCAGCTAGAGAGCAAGCCAACAGTATCTGACGGG-AT--GTTCCAGCCTACAGGAAAGAGAGGCGTGGGGTCATTCCCTGTCACCGCTTCCCACGGCACTGGGAGGGCCT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3                446429 112 + 190850796 TTCTCAACTAAAGAGCAAGGCAACAGGATCTGATGGG-ACGTGTTACAGCCTACAGGAAGAAAAGGGATGGGGTCATTCCCCATCACAGCTCCCCATGGCACTGGGAGGGCCT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87532757 109 - 129401213 GTCTTAGCTAGAGAGCAGGCAAACAAGATCTGATAGGAACATGTTAGAGTGTGCAGGAAAAAAAAAAA--GAGTCATTCTCTCCTGTAGA-CCCCTTGGTGCT-AGAGGGTGT
i mm10.chr8                C 0 C 0
s canFam3.chr16             17836650  93 -  59632846 CTCTCAGTTAATAAATAAGGCAACCAGATTTAAAGGA-G-------------ATATGAAAGAAAT-----GAGTCATTTCCCAGTGTCATTCCTTATGGC-TTGTGAGCACCT
i canFam3.chr16            C 0 C 0

a score=439932.000000
s hg38.chr4_KI270925v1_alt    143053 188 +    555799 AGACAAGGCCATTGGTGGCTCCCACAACCC-ATGTGAATGCACAGGGATGCTC-----GAGGAGAAGGCACTCTGGTGTCACCAGGTAAAGATGCTCC-AACCCAGGGACAAGGACATGG----GGCCAGAGCCCTGGGGACGCTAAAGG--AAAACTAGGCT-------------GGG------GAGAG---GGGCTTAGGCGA-AGC--TGAATGCTGGACTAA
s panTro4.chr4             192838436 188 + 193495092 AGACAAGGCCATTGGTGGCTCCCACAACCC-ATGTGAATGCACAAGGATGCTC-----GAGGAGTAGGCACTCTGGTGTCACCAGGTAAAGATGCTCC-AACCCAGGGACAAGGACATGG----GGCCAGAGCCCTGGGGACGCCAAAGG--AAAACTAGGCT-------------GGG------GAGAG---GGGCTTAGGCGA-AGC--TGAATGCTGGACCAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197940737 187 + 198332218 AGACAAGGCCATTGGTGGCTCCCACAACCC-ATGTGAATGCACAAGGATGCTC-----GAGGAGAAGGCACTCTGGTGTCACCAGGTAAAGATGCTCC-AACCCAGGGACAAGGACATGG----GGCCAGAACCCTGGGG-CGTCAAAGG--AAAACTAGGCT-------------GGG------GAGAG---GGGCTAAGGTGA-AGC--TGAAGGCTGGACTAA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183534469 189 + 184069350 AGACAAGGTCGCTGGTGGCTCCCACAACCCGGTGTGAATGCACAAGGATGCTC-----GAGGAGAAGGCATGCTGGTGCTGCCGGGTGAAGACGCTCC-AACCCAGGGACAAAGACATGG----GGCCGGAGCCCTGGTGGTGCCAAAGG--CAAACTAGGCT-------------GGG------GAGAG---GGGCTCTGGTGA-AGC--TGAATACTGGACTAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188917983 189 + 189454096 AGACAAGGTCGCTGGTGGCTCCCACAACCCGGTGTGAATGCACAAGGATGCTC-----GAGGAGAAGGCATGCTGGTGCTGCCGGGTGAAGACGCTCC-AACCCAGGGACAAAGACATGG----GGCCGGAGCCCTGGTGGTGCCAAAGG--CAAACTAGGCT-------------GGG------GAGAG---GGGCTCTGGTGA-AGC--TGAATACTGAACTAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178340063 189 + 178775436 AGACAAGGTCGCTGGTGGCTCCCATAACCCGGTGTGAATGCACAAGGATGCTC-----GAGGAGAAGTCATGCTGGTGCTGCCGGGTAACGACGCTCC-AACCCAGGGACAAGGACATGG----GGCCGGAGCCCTGGTGGTGCCAAAGG--CAAACtaggct-------------ggg------gagag---gggctcTGGTGA-AGC--TGAACACTGAACTAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135281253 186 + 135778131 AGGCAAGGTCGCTGGTGGCTCCCACAACCCCGTGTGAATGCGCAAGGGTGCTC-----GAGGAGAAGGC--GCTGGTGCTGCCGGGTAACGACGCTCC-AACCCAGGGACAAGGACAT-G----GGCCGGAACCCTGGTGGCGCCAAAGG--CGAACGAGGCT-------------GGG------GAGAG---GGGCTCTGGTGA-AGC--TGAACACTGGACTAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3                446541 202 + 190850796 AGACAAGGTCATCGGCAGCTCCCACAACCCCATGTGAATGCACAAGGGTGCTC-----ACAGAGAAGGCACTCAGGTGCTGCCAGGTAAAGGTGCTCA-GACCCAGGGATGAGGACATGG----GACGGGCACTCTGGTGGTGCCAAAGG--AAAACTAGGCTGCCCTCCCCTCAGGGA------GAGAG---GGGCTAAGGAGA-AGC--TGAATGCTGGGCTAA
i calJac3.chr3             C 0 I 1934
s mm10.chr8                 87532866 199 - 129401213 AGAAGACATCATTAGCAGTTCCCACAGC----------TGCGCAAGAAAGCTCAGCAAAAGAAAAAATTCCCCCAGTGCTGACAAGCA--GAAGCTCCAAACCCATGGACAGAGACAAGGAAAAGGGTAGAACAC--ATGCTGACAAAGAGCCAAGCTAGCCT-------------AAGTTCCTTGAAAGACAGCGACAGGGTGACAGCCATTACTTCCTGAGAAA
i mm10.chr8                C 0 C 0
s canFam3.chr16             17836743 194 -  59632846 AGAAAAGACAATTAGTAGTTCCCCTGGCTCCATGTGAAAGCACAAAGATGCTA-----AAGGAGAAGTTACTCTACTGCTGGCAGGTAAAGAGGCTCCAAACCTACAGACAGGGACTTGG----AGATGTGAACCT-CTGGTGCCAAAGG--AAAACTAGACTACCCTATCCT---AGA--------------GGGTCAAACTGA-AGT--TGCCTATTAGTGTGA
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113698504  15 + 115148730 I

a score=210361.000000
s hg38.chr4_KI270925v1_alt    143241 123 +    555799 GATGGGTGTGTACCCCACATGCGCAGACATCGCCAAATGGACCAAAGCCACCAACATTAGAAC-AACCCAG--------AGCAAAGTGCAGCG--AGAACAAGGTTGGCTCCTCTGCACTAACCCTCCGCACTG
s panTro4.chr4             192838624 110 + 193495092 GATGGGTGTGTACCCCACATGCGCAGACATCGCCACGTGGACCAAAGCCACTAACATTAGAAC-AACCCAG--------AGCAAAGTTCAGCG--AGAACAAGGTTGGCT-------------CCTCCGCACTA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197940924 123 + 198332218 GATGAGTGTGTACACCACATGTGCAGACATCGCCACATGGACCAAAGCCACCAACATTAGAAC-AACCCAG--------AGCAAAGTGCAGTG--AGAACAAGTTCGGCTCCTCGGCACTAACCCTCCGCACTG
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183534658 123 + 184069350 GACGAGTGTGGACCCCACATGCGCAGGTATCACCACATGGACCAACGCCACCAACATTAGAAC-AACCCAG--------AGCGAAGTGCAGCG--AGAACAAGGTCGGTTCCTCGGCGCTGACCctctgcgctg
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188918172 123 + 189454096 GACGAGTGTGGACCCCACATGCGCAGGTATCACCACATGGACCAACGCCACCAACATTAGAAC-AACCCAG--------AGCGAAGTGCAGCG--AGAACAAGGTCGGTTCCTCGGCGCTGACCCTCTGCGCTG
i macFas5.chr5             C 0 I 122
s papAnu2.chr5             178340252 123 + 178775436 GATGAGTGTGGACCCCACATGCGCAGGTATCACCACACGGACCAACGCCACCAACATTAGAAC-AACCCAG--------AGCAAAGTGCATCG--AGAACAAGGTCGGTTCCTCTGCACTGACCCTCCGCGctg
i papAnu2.chr5             C 0 I 419
s chlSab2.chr7             135281439 123 + 135778131 GATGAGTGTGGACCCCACATGCGCAGGTGTCACCACATGGACCAACGCCACCAACACTAGAAC-AACCCAG--------AGCGAAGTGCAGCG--AGAACAAGGTCGGTTCCTCTGCACTCACCCTCCGCGCTG
i chlSab2.chr7             C 0 I 404
s mm10.chr8                 87533065 104 - 129401213 AATGGGAGT--ATCCAAAATG----------------TGAACAAAGGCCACCGGCTTTAGAAA-ATGCCAAGTGGTGCCAGCCTAGCCTGGTGCTAAAGTAAGATTGGTTTCTGGGAACTAAC-----------
i mm10.chr8                C 0 C 0
s canFam3.chr16             17836937 101 -  59632846 ---GAAAAT---------ATGTACAGACATGTCAATATCAATAAAAGCCATCAGTGTCAGAATAAAACCAG--------ACTAAACCTCAGCT--AGAGCAAAGTCAGCCCCTCTGCACTACC-----------
i canFam3.chr16            C 0 C 0
e calJac3.chr3                446743 1934 + 190850796 I
e nomLeu3.chr7b            113698504  15 + 115148730 I

a score=4827.000000
s hg38.chr4_KI270925v1_alt    143364 3 +    555799 ACC
s panTro4.chr4             192838734 3 + 193495092 ACC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197941047 3 + 198332218 ACC
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183534781 3 + 184069350 acc
i rheMac3.chr5             C 0 I 189
s macFas5.chr5             188918417 3 + 189454096 ACA
i macFas5.chr5             I 122 C 0
s papAnu2.chr5             178340794 3 + 178775436 ACC
i papAnu2.chr5             I 419 C 0
s chlSab2.chr7             135281966 3 + 135778131 ACC
i chlSab2.chr7             I 404 C 0
e mm10.chr8                 87533169 0 - 129401213 C
e canFam3.chr16             17837038 0 -  59632846 C
e calJac3.chr3                446743 1934 + 190850796 I
e nomLeu3.chr7b            113698504 15 + 115148730 I

a score=84919.000000
s hg38.chr4_KI270925v1_alt    143367 52 +    555799 CTCTGCACTGACGTGCACCTGTGAGGAAGAAGATCCTTCAGTTCCCTCACTG
s panTro4.chr4             192838737 52 + 193495092 CTCTGCACTGACGCGCACCTGTTAGGAAGAAGATCCTTCAGTTCCCTCACTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197941050 52 + 198332218 CTCTGCACTGACGTGCACCTGTGAGGAAGAAGATCCTTCAGTTCCCTCACTG
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183534973 52 + 184069350 CTCTGCACTAACGTACACCTGTGAGGAAGAAGATCCTTCAGTTCCCTCACTG
i rheMac3.chr5             I 189 C 0
s macFas5.chr5             188918420 52 + 189454096 CTCTGCACTAACGTACACCTGTGAGGAAGAAGATCCTTCAGTTCCCTCACTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178340797 43 + 178775436 CTCTGCACTAACGTGCACCTGTGAGGAAGAAGATCCT---------TCACTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135281969 52 + 135778131 CTCTGCATTAACGTGCACCTGTGAGGAAGAAGATCCTTCAGGTCCCTCACTG
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87533169 32 - 129401213 ----------ATGTACAAC--------AGCAGATC--TCAGTTTCATTATtg
i mm10.chr8                C 0 I 390
s canFam3.chr16             17837038 23 -  59632846 --------------------------AGGAACATCTTTAGATTCTATCA---
i canFam3.chr16            C 0 C 0
e calJac3.chr3                446743 1934 + 190850796 I
e nomLeu3.chr7b            113698504 15 + 115148730 I

a score=235721.000000
s hg38.chr4_KI270925v1_alt    143419 126 +    555799 GTCCTCT------CCCTGC-----CCCTGCCCCAGCATCACAGGAGCTAGCCCTAAAAGGAAAGTCGTGCAGCTGGAGGGATCTCAAAGCCAGACCATACCCAGCCcacaactacacacacacactcacatacacat
s panTro4.chr4             192838789 132 + 193495092 GTCCTCTCCCTGCCCCTGC-----CCCTGCCCCAGCATCACAAGAGCTAGCCCTAAAAGGAAAGTCGTGCAGCTGGAGGGATCTCAAAGCCAGACCATACCCAGCCTACAACTacacacacacactcacatacacat
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197941102 126 + 198332218 GTCCTCT------CCCTGC-----CCCTGCCCCAGCATCACAGGAGCTAGCCCTAAAAGGAAAGTCGTGCAGCTGGAGGGATCTCAAAGCCAGACCATACCCAGCCCACAACTacacacacacgctcacatacacat
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183535025 114 + 184069350 GTCCTCT------CCCTGC-----CCCTGCCCCAGCATCACAGGAGCTAACCCTAAAAGGAAAGGTGTGCAGCTGGAGAGATCTCAAAGCCAGACCATACCCAGCTCACAACTACACACACTCAC------------
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188918472 114 + 189454096 GTCCTCT------CCCTGC-----CCCTGCCCCAGCATCACAAGAGCTAACCCTAAACGGAAAGGTGTGCAGCTGGAGAGATCTCAAAGCCGGACCATACCCAGCTcacaactacacacactcac------------
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178340840 119 + 178775436 GTCCTct------ccctgccccatccctgccccagcATCACAGGAGCTAACCCTGAAAGGAAAGGTGTGCAGCTGGAGAGATCTCAAAGCCGGACCATACCCAGctcacaactacacacactcac------------
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135282021 114 + 135778131 GTCCTCT------CCCTGC-----TCCTGCCCCAGCATCACAGGAGCTAACCCTAAAAGGAAAGGTGTGCAGCTGGAGAGATCTCAAAGCCGGACCATCCTCAGCTcacaactacacacactcac------------
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17837061 126 -  59632846 -TCTTCT-----TTCCTGT-----CTCTGCCCCAACATCAAAGGAGTCAGTCCTGGAATCAAAGGGGTGGAACTAAAGGTATCTCCAAGCCAGACCATAACCAGCCCCCTTCTacacacacacacacacacacacac
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87533201 390 - 129401213 I
e calJac3.chr3                446743 1934 + 190850796 I
e nomLeu3.chr7b            113698504  15 + 115148730 I

a score=69149.000000
s hg38.chr4_KI270925v1_alt    143545 79 +    555799 acacacttacacactctctcacacacagacttactctctc--acacacacttacaca--------ctcac--------acattctcacacacacaca
s panTro4.chr4             192838921 87 + 193495092 acacacttacacactctctcacacacagacttactctctc--acacacacttacacactcacattctcac--------acacactcacacacacaca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197941228 81 + 198332218 acacacttacacacttgctcacacacaGACTTACTCTCTcatacacacacttacaca--------ctcac--------acattctcacacactcaca
i ponAbe2.chr4             C 0 I 279
s rheMac3.chr5             183535139 57 + 184069350 ACCCACTT----ACTCTCTCACACACA--------CTTTc--acacacactcacgca------ttctcat----------------acacaca----
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188918586 65 + 189454096 acccactt----actctctcacacaca--------ctttc--acacacactcacgca------ttctcat--------acacactcacacaca----
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178340959 73 + 178775436 acccactt----actctctcacacaca--------ctttc--acacacactcacgca------ttctcatacacactcacacactcacacaca----
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135282135 67 + 135778131 acac--------actctctcacacaca--------ctttc--acacacactcacgca------ttctcat--acatacacactctcacacaca----
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87533201 390 - 129401213 I
e canFam3.chr16             17837187  0 -  59632846 C
e calJac3.chr3                446743 1934 + 190850796 I
e nomLeu3.chr7b            113698504 15 + 115148730 I

a score=54620.000000
s hg38.chr4_KI270925v1_alt    143624 51 +    555799 tacactgccacatgtatgcacacaatcatgcacattcagacacataca----ca------c
s panTro4.chr4             192839008 57 + 193495092 tacactgccacatatatacacacaatcatgcacactcagacacataca----cactcacgc
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183535196 51 + 184069350 cacactgccacatatatacaatcactcatgcacactcagacacgtaca----ca------c
i rheMac3.chr5             C 0 I 6
s macFas5.chr5             188918651 55 + 189454096 tacactgccacatatatacaatcactcatgcacactcagacacatacacagtca------c
i macFas5.chr5             C 0 I 6
s papAnu2.chr5             178341032 55 + 178775436 tactctgccacatatatacagtcactcatgcacactcagacacatacacactca------c
i papAnu2.chr5             C 0 I 6
s chlSab2.chr7             135282202 51 + 135778131 tacactgtcacatatatacaatcactcatacacactcagacacataca----ca------c
i chlSab2.chr7             C 0 I 82
e mm10.chr8                 87533201 390 - 129401213 I
e canFam3.chr16             17837187  0 -  59632846 C
e calJac3.chr3                446743 1934 + 190850796 I
e nomLeu3.chr7b            113698504 15 + 115148730 I
e ponAbe2.chr4             197941309 279 + 198332218 I

a score=32291.000000
s hg38.chr4_KI270925v1_alt    143675 60 +    555799 acgcttacacacacaca------gacacatatataatcacactc---tcacactgtcacacacacacaa
s panTro4.chr4             192839065 60 + 193495092 acgcttacacacCCACA----CTGACACATATATGATcaca--c---acacactgtcacacacactcac
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183535253 65 + 184069350 acgttcacacacacatatacactgacacatatata--cacactcacaacacactctcacacactcac--
i rheMac3.chr5             I 6 C 0
s macFas5.chr5             188918712 65 + 189454096 acgttcacacacacatatacactgacacatatata--cacactcacaacacactctcacacactcac--
i macFas5.chr5             I 6 C 0
s papAnu2.chr5             178341093 65 + 178775436 acattcacacacacatatacactgacacatatata--cacactcacaacacacactcacacactcac--
i papAnu2.chr5             I 6 C 0
e mm10.chr8                 87533201 390 - 129401213 I
e canFam3.chr16             17837187  0 -  59632846 C
e calJac3.chr3                446743 1934 + 190850796 I
e chlSab2.chr7             135282253 82 + 135778131 I
e nomLeu3.chr7b            113698504 15 + 115148730 I
e ponAbe2.chr4             197941309 279 + 198332218 I

a score=6960.000000
s hg38.chr4_KI270925v1_alt    143735 5 +    555799 acata
s panTro4.chr4             192839125 5 + 193495092 acata
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197941588 5 + 198332218 acata
i ponAbe2.chr4             I 279 C 0
s rheMac3.chr5             183535318 5 + 184069350 acata
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188918777 5 + 189454096 acata
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178341158 5 + 178775436 acata
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87533201 390 - 129401213 I
e canFam3.chr16             17837187 0 -  59632846 C
e calJac3.chr3                446743 1934 + 190850796 I
e chlSab2.chr7             135282253 82 + 135778131 I
e nomLeu3.chr7b            113698504 15 + 115148730 I

a score=16575.000000
s hg38.chr4_KI270925v1_alt    143740 10 +    555799 cacactctca
s panTro4.chr4             192839130 10 + 193495092 cacacactca
i panTro4.chr4             C 0 I 17
s ponAbe2.chr4             197941593 10 + 198332218 cacactctca
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183535323 10 + 184069350 cacactctcg
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188918782 10 + 189454096 cacactctcg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178341163 10 + 178775436 cacactctcg
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135282335 10 + 135778131 cacactcttg
i chlSab2.chr7             I 82 C 0
e mm10.chr8                 87533201 390 - 129401213 I
e canFam3.chr16             17837187  0 -  59632846 C
e calJac3.chr3                446743 1934 + 190850796 I
e nomLeu3.chr7b            113698504 15 + 115148730 I

a score=18300.000000
s hg38.chr4_KI270925v1_alt    143750 15 +    555799 cacactcac----acacac
s ponAbe2.chr4             197941603 19 + 198332218 cacacttactctcacacac
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183535333 15 + 184069350 cacactcac----acacac
i rheMac3.chr5             C 0 I 56
s macFas5.chr5             188918792 15 + 189454096 cacactcac----acacac
i macFas5.chr5             C 0 I 12
s papAnu2.chr5             178341173 15 + 178775436 cacactcac----acacac
i papAnu2.chr5             C 0 I 12
s chlSab2.chr7             135282345 15 + 135778131 cacactcac----acacac
i chlSab2.chr7             C 0 I 10
e mm10.chr8                 87533201 390 - 129401213 I
e canFam3.chr16             17837187  0 -  59632846 C
e calJac3.chr3                446743 1934 + 190850796 I
e nomLeu3.chr7b            113698504 15 + 115148730 I
e panTro4.chr4             192839140 17 + 193495092 I

a score=10050.000000
s hg38.chr4_KI270925v1_alt    143765 20 +    555799 acgcagac-atataca----cacac
s ponAbe2.chr4             197941622 20 + 198332218 acgcagac-atatata----cacac
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             188918819 25 + 189454096 gcacagacaacacacaatcacacac
i macFas5.chr5             I 12 C 0
s papAnu2.chr5             178341200 25 + 178775436 gcacagacaacacacaatcacacac
i papAnu2.chr5             I 12 C 0
s chlSab2.chr7             135282370 23 + 135778131 acacagacaacacacaat--cacac
i chlSab2.chr7             I 10 C 0
e mm10.chr8                 87533201 390 - 129401213 I
e canFam3.chr16             17837187  0 -  59632846 C
e calJac3.chr3                446743 1934 + 190850796 I
e rheMac3.chr5             183535348 56 + 184069350 I
e nomLeu3.chr7b            113698504 15 + 115148730 I
e panTro4.chr4             192839140 17 + 193495092 I

a score=1733.000000
s hg38.chr4_KI270925v1_alt    143785 10 +    555799 tctcacagac
s ponAbe2.chr4             197941642 10 + 198332218 actcatactc
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             188918844 10 + 189454096 tgtcacacac
i macFas5.chr5             C 0 I 8
s papAnu2.chr5             178341225  6 + 178775436 tgtcac----
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135282393 10 + 135778131 tgtcacacac
i chlSab2.chr7             C 0 I 14
s mm10.chr8                 87533591 10 - 129401213 TCTTAAAGCC
i mm10.chr8                I 390 C 0
e canFam3.chr16             17837187  0 -  59632846 C
e calJac3.chr3                446743 1934 + 190850796 I
e rheMac3.chr5             183535348 56 + 184069350 I
e nomLeu3.chr7b            113698504 15 + 115148730 I
e panTro4.chr4             192839140 17 + 193495092 I

a score=92755.000000
s hg38.chr4_KI270925v1_alt    143795 91 +    555799 acacatacacacact--cacatact----------ctcacacacacacgccctcacaca-atacactgacacatatatacacatatacacaatcactcatgcac
s ponAbe2.chr4             197941652 87 + 198332218 tcacacacttacact--cacacact----------ctcacacacac----cctcacaca-atacactgacacatatatacacatatagacaatcactcatgcat
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183535404 98 + 184069350 acacacacacacact--ctcacactctcacacacactcacacacac----cctcacacacatacactgacacatatatacacatatacacaatcactcatgcac
i rheMac3.chr5             I 56 C 0
s macFas5.chr5             188918862 88 + 189454096 acactcacacacact--ctcacact----------ctcacacacac----cctcacacacatgcactgacacatatatacacatatacacaatcactcatgcac
i macFas5.chr5             I 8 C 0
s papAnu2.chr5             178341231 88 + 178775436 acactcacacacact--ctcacact----------ctcacacacac----tctcacacacatgcactgacacatatatacacatatacacaatcactcatgcac
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135282417 90 + 135778131 acactcacacacacttactctcaca----------ctcacacacac----cctcacacacatacactgacacatatgtacacatatacacaatcactcatgcac
i chlSab2.chr7             I 14 C 0
s mm10.chr8                 87533601 77 - 129401213 AGATTGAGACAAACT---------A----------TTCACTTATAG--------AGAAAGATGGACTTACAAAGAGAGGAATCTacagagacaaagacatacaa
i mm10.chr8                C 0 C 0
e canFam3.chr16             17837187  0 -  59632846 C
e calJac3.chr3                446743 1934 + 190850796 I
e nomLeu3.chr7b            113698504 15 + 115148730 I
e panTro4.chr4             192839140 17 + 193495092 I

a score=69344.000000
s hg38.chr4_KI270925v1_alt    143886 72 +    555799 tcactgacacacatacacacact-------cacacatttacacacatacacacccacaca----cacatacacatacactca----a
s panTro4.chr4             192839157 76 + 193495092 tcactgacacacatacacacact-------cacacatttctatacatacacacccacaca----cacatacacatacactcacacaa
i panTro4.chr4             I 17 C 0
s ponAbe2.chr4             197941739 72 + 198332218 tcactg----acatacacacact-------cacacatttacacacatacacacctacaca----cacatacccatacactcacacac
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183535502 68 + 184069350 tcactgacacacataca-------------cacacatttacacacatacacacccacaca------catacatatacactcacacgc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188918950 68 + 189454096 tcactgacacacataca-------------cacacatttacacacatacacacccacaca------catacatatacactcacacgc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178341319 48 + 178775436 tcactgacacacataca-------------cacacatttacacacatacacacccacaca--------------------------c
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135282507 52 + 135778131 tcactgacacacataca-------------cacatatttacacacataca----------------------tatacactcacacgc
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87533678 85 - 129401213 --agagacagatctatagagactgaggtaacagtgattcacatagagagaaaaaggaacagagagagacacatagagactgacagaa
i mm10.chr8                C 0 C 0
e canFam3.chr16             17837187  0 -  59632846 C
e calJac3.chr3                446743 1934 + 190850796 I
e nomLeu3.chr7b            113698504 15 + 115148730 I

a score=726688.000000
s hg38.chr4_KI270925v1_alt    143958 394 +    555799 acacacaca--------cacccctacaacattcacaGAGCAAAGGTCACCAGCAAAGCTCCAATTGCCAGAGGGGTGAATTTTGACTGGTCTATCAATATGAGCTTCATATTCCAAATAAACCTGGATTACATTCTAG-------GAAGCAGAAGTCACTAGACACTGGAATGTGTTATTAA-------------CGGGTAGGGAGA--------ATAGATTTAATATGAGACACTGGAAAATCCTTACAG-AA--------------AAAATCAATTTTACTTTATA---CCCCAATC-ATATGAGAATTGGGAATCCT-GACATCCTAAGCTTACATCTCCTTCTCGTCCTTTCCTCAGCCCACTTCGTTACTGCTTTTCAAACGTTC--TGCTCATGCAGACCAGCAATGCCCCGAG-GTTGAAAATAACAGAAAGTTTTAAAAATCAAA
s panTro4.chr4             192839233 394 + 193495092 atacacaca--------cCCCCCCACAACATTCATAGAGAGAAGGTCACCATCAAAGCTCCAATTGCCGGAGGGGTGAATTTTGACTCGTCTATCAATATGAGCTTCATATTCCAAATAAACCTGGATTACATTCTAA-------GAAGCAGAAGTCACTAGACACTGGAATGTGTTATTAA-------------CGGGTAGGGAGA--------ATAGATTTAATATGAGACACTGGAAAATCCTTACAG-AA--------------AAAATCAATTTTACTTTATA---CCCCAATC-ATATGAGAATTGGGAATCCT-GACATCCTAAGTTTACACCTCCTTCCCGTCCTTCCCTCAGCCCACTTCGTTACTGCTTTTCAAACGTTC--TGCTCATGCAGACCAGCAATGCCCCGAG-GTTGAAAATAACAGAAAGTATTAAAAATCAAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197941811 395 + 198332218 atacacaca--------cacCCCCACAACATTCATAGAGAGAAGGTCAACATCAAAGCTCCAATTGCCAGAGGGGTGAATTTTGACGCGTCTATCAATATGAGCTTCATATTCCAAATAAACCTGGATTACATTTTAA-------GAAGCAGAAGTCACTAGACACTGGAATGTGTTATTAA-------------TGGGTAGGGAGA--------ATAGATTTAATATGAGACACTGGAAAATCATTATAGAAA--------------AAAATCAATTTTACTTTATA---CCCCAATC-ATATGAGAATTGGGAACCCT-GACATCCTAAGTTTACACCTCCTTCCCGTCCTTTCCTCAGCCCACTTCGTTACTGCTTTTCAAACGTTC--TGCTCATGCAGACCAGCAATGACCCAAG-GTTGAAAATAACAGAAAGTTTTAAAAATCAAA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183535570 391 + 184069350 atacacacactcacacTCACACCCACAACATTCATAG----AAGGTCAACATCAAAGCTCCAGTTGCCAGAGGGCTGAATTTTGACTCGTCTATGAATATGAGCTTCGTATTCCAAATAAACCTGGATTACATTTTAA-------GAAGCGGAAGTCACTGGACACTTCAATGTGTTGTTAA---------------GGT---GAGA--------AGAGATTTAATACGAGACACTGGAAAATCACTATAGAAA--------------AAAATTGATTTTACTTTATA---CCCCAATC-ATATGAGAA--GGGGATCCT-GACATCCTAAGTTCACACCTCCTTCCTGTCCTTTCCTCAGCCCACTTCATTGCTGCGTTTCCAG-GCTC--TGCTCACGCAGAGCAGCAATGCCCCAAG-CTTGAAAATAACAGAAAGTTTTAAAAATCAAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188919018 391 + 189454096 atacacacactcacattcacacccacaGCATTCATAG----AAGGTCAACATCAAAGCTCCAGTTGCCAGAGGGCTGAATTTTGACTCGTCTATGAATATGAGCTTCGTATTCCAAATAAACCTGGATTACATTTTAA-------GAAGCGGAAGTCACTGGACACTTCAATGTGTTGTTAA---------------GGT---GAGA--------AGAGATTTAATACGAGACACTGGAAAATCACTATAGAAA--------------AAAATCGATTTTACTTTATA---CCCCAATC-ATATGAGAA--GGGGATCCT-GACATCCTAAGTTCACACCTCCTTCCTGTCCTTTCCTCAGCCCACTTCATTGCTGCGTTTCCAG-GCTC--TGCTCACGCAGAGCAGCAATGCCCCAAG-CTTGAAAATAACAGAAAGTTTTAAAAATCAAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178341367 393 + 178775436 atacacacactcacactcacacccacagcATTCATAG----AAGGTCAACATCAAAGCTCTAGTTGCCAGAGGGCTGAATTTTGACTCGTCTATGAATATGAGCTTCGTATTCCAAATAAACCTGGATTACATTTTAA-------GAAGCAGAAGTCACTGGACACTTCAATGTGTTGTTAA---------------GGT---GAGA--------AGAGATTTAATATGAGACACTGGAAAATCACTATAGaaa--------------aaaaTCGATTTTACTTTATA---CCCCAATC-ATATGAGAATTGGGGATCCT-GACATCCTAAGTTCACACCTCCTTCCTGTCCTTTCCTCAGCCCACTTCATTGCTGCGTTTCCAG-GCTC--TGCTCATGCAGAGGAGCAATGCCCCAAG-CTTGaaaataacagaaagttttaaaaatcaaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135282559 386 + 135778131 atacacacactcacattcacacccacaacaTTCATAG----AAGGTCAACATCAAAGCTCCAGTTGCCAGAGGGCTGAATTTTGACTCGTCTATGAATATGAGCTTCGTATTCCAAATAAACCTGGATTACATTTGAA-------GAAGCAGAAGTCACTTGACACTTCAATGTGTTGTTAA---------------GGT----------------GAGATTTAATATGAGACACTGGAAAATCATTATAGAAA--------------AAAATCGATTTTACTTTATA---CCCCAATC-ATATGAGAA--GGGGATCCC-GACATCCTAAGTTCACACCTCCTTCCTGTCCTTTCCTCAGCCCACTTCATTGCTGCGTTTCCAG-GCTC--TGCTCACGCAGAGCAGCAATGCCCCAAG-CTTGAAAATAACAGAAAGTTTTAAAAATCAGA
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87533763 325 - 129401213 atacagaga--------------------------------cagagaAACCCCAGCATTTCAGCTGCAAGAATAAC--ACTTTGACT----TGTAGGCATGAGGTCTGTGTTCTAAATTTGCCCGATTTACATTTGAA------------------CATGGAAAACTGAAA--------------------------AGAAAAAAAA--------AAAGATTAAGTAGGATACACTGATAAATGATCATGGAGG--------------GAGCACGTTTATGTCTTACAGAGCTGCAGGCAATAGGGGAATCTGAACTCCC-GGCTCTCCTTGTATACCCTTCCCTGT--TCCTTTCCGCATCAAACTTCTTTGCTCCATGT---------------------GAGCAGTGGTGCTCTATGAATAGAAAACAAGAGAAAGCTCTGAAAACACAA
i mm10.chr8                C 0 C 0
s canFam3.chr16             17837187 439 -  59632846 acacacaca--------cacacataacacaTTCCTATAAAGAAGGAAAAGATCAAAGCTCCAGTTGCAAAAGAAGTGAATTTTAATTCATGCATAAATATGAGATTCATGTTCTAAATGGACTGGAATTAAATTTCAATTTCAATAAAGCACAAGGGATCAGACACTTGATTATGTTTTTATGTTGTTAAGTGTGTTGGGGGGAAGAGGGGTTGGAGGGGTTTAATATGGAGCATTGGaaaatattaattgaaaaataattttaactgaaaaataattataCCCTATA---TCCCAATA-ATATAAGAAACAAGAATACTGGGCATATTTTTTTTTCTTTTACCATCTATCCTTTTCTAAACCGACTTCATTGTTGCCTTTCAAATGTTCTATATTCAAGAAGAGCACCAATGTCCCACA-ATTAGAAACTG-AGAAAGCTTCAAAAACCAAA
i canFam3.chr16            C 0 I 235
e calJac3.chr3                446743 1934 + 190850796 I
e nomLeu3.chr7b            113698504  15 + 115148730 I

a score=285721.000000
s hg38.chr4_KI270925v1_alt    144352 149 +    555799 AGGTCATTACACTTTTTAAAA------ACTGAG-AAAAAATTCACATACCCTAATATTCACGTATTTAAAG--CCCAGGTCTGGTCTGGTTCTCTG--------TGAGGCAGAAGGCTTTTGTCCACGTGGAGATGTTTGCACAGCAGGTGTCCACACTTTGCTCC
s panTro4.chr4             192839627 149 + 193495092 AGGTCAATACACTTTTTAAAA------ACTGAG-AAAAAATTCACATACCATAATATTCACGTATTTAAAG--CCCGGGTCTGGTCTGGTTCTCTG--------TGAGGCAGATGGCCTTTGTCCACGTGGAGATGTCTGCACAGCAGGTGTCCACACTTTGCTCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197942206 150 + 198332218 AGGTCAATAAACTTTTTAAAA------ACTGAGAAAAAAATTCACATACCATAATATTCATGTATTTAAAG--CCCAGGTCTGGTCTGGTTCTCTG--------TGAGGCAGATGGCCTTTGCCCACGTGGAGATGTCTGCACAGCAGGTGTCCACACTTTGCTCC
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183535961 155 + 184069350 AAGTCAATATACTTTTTAAAA------ACTGAG-AAAAAATTCACATACCATAATATTCACGTATGTAAAG--CCCGGGTTTGGCCTGGTTCTCGGTGAGTC--TGAGGCAGATGGTCTTTGTCCACGTGGAGACGTCTGCACAGCAGGTGTCCACGCTTCGCTCC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188919409 155 + 189454096 AGGTCAATATACTTTTTAAAA------ACTGAG-AAAAAATTCACATACCATAATATTCACGTATGTAAAG--CCCGGGTTTGGCCTGGTTCTCGGTGAGTC--TGAGGCAGATGGTCTTTGTCCACGTGGAGACGTCTGCACAGCAGGTGTCCACGCTTCGCTCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178341760 156 + 178775436 aggtcaatatactttttaaaa------actgag-aaaaaattcacataccataataTTCACGTATGTAAAG---CCGGGTTTGGCCTGGTTCTCGGTGAGTCTGTGAGGCAGATGGCCTTTGTCCACGTGGAGACGTCTGCACAGCAGGTGTCCACGCTTCGCTCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135282945 154 + 135778131 AGGTCAATATACTTTTTAAAA------ACTGAG-AAAAAATTCACATACCATAATATTCACGTATGTAAAG---CCGGGTTTGGCCTGGTTCTCGGTGAGTC--TGAGGCAGATGGCCTTTGTCCACGTGGAGACGTCTGCACAGCAGGTGTCCACACTTCGCTCC
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87534088 147 - 129401213 ATTCCAACATAGGTTTTTCAAT---TCATTGCT-ACATAATTCATATGCTGTGAAATTTGC-CAGCTGAAG--CACCGGCTAAACCTGA---------AGTC--TGATGCTGCCCACCATTGCTCCTGTGGCGGGATCTGCACAGACAATGTTCATGTTTC-CTCC
i mm10.chr8                C 0 C 0
s canFam3.chr16             17837861 130 -  59632846 AGGTCAAAATACTTTTTAAACTAAATTATCAAG-ATATACTTCACATACAATAACAGTCACTCATTTCAAGCTCTCTGGTTTGGTCTGGTTCT------------------GATGGCCTTTGTTGGTATTGAGAAGTCTATATAGGTGG-----------------
i canFam3.chr16            I 235 C 0
e calJac3.chr3                446743 1934 + 190850796 I
e nomLeu3.chr7b            113698504  15 + 115148730 I

a score=300970.000000
s hg38.chr4_KI270925v1_alt    144501 130 +    555799 GTCCGGTGTCCAGCTTCGCCTTG-GCCC-CTCTCTCACTGACAGGAGGGGAGCCTCGTTTT--TTTGTCACCATCGGTGGTTCTTGTATCCATGTCTCTGTCCCTGGTTTCAAAGCCTCATCACCTGGTAGCAC
s panTro4.chr4             192839776 130 + 193495092 GTCCAGTGTCCAGCTTCGCCTTG-GCCC-CTCTCTCACTGACAGGAGGGGAGCCTCGTTTT--TTTGTCACCATCAGTGGTTCTTGTATCCATGTCTCTGTCCCTGGTTTCAAAGCCTCATCACCTGGCAGCAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197942356 130 + 198332218 GTCAAGTGTCCAGCTTTGCCTTG-GGCC-CTCTCTCACTGACAGGAGGGTAGCCTCGTTTT--TTTGTCACCATCAGTAGTTCTTGTCCCTGTGTCTCTGTCCCTGGTTTCAGAGCCTCATCACCTGGTAGCAC
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183536116 129 + 184069350 GTCCAGTGTCCGGCTTCGCCTTG-GCC--CCCCCTCACTGACAGGAGGGTGGCCTCGTTGT--TTCGTCACCATCAGTGGTTCTTGTCCCGATGTCTCTGACCCTGGTTTCAGAGCCTCATCACCTGGTAGCAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188919564 129 + 189454096 GTCCAGTGTCCGGCTTCGCCTTG-GCC--CCCCCTCACTGACAGGAGGGTGGCCTCGTTGT--TTCGTCACCATCAGTGGTTCTTGTCCTTATGTCTCTGACCCTGGTTTCAGAGCCTCATCACCTGGTAGCAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178341916 129 + 178775436 GTCCAGTGTCCGGCTTCGCCTTG-GCC--CCCTCTCACTGACAGGAGGGTGGCCTCGTTGT--TTCGTCACCATCAGTGGTTCTTGTCCCTATGTCTCTGACCCTGGTTTCAGAGCCTCATCACCTGGTAGCAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135283099 130 + 135778131 GTCCAGCGTCCGGCTTCACCTTG-GCCT-CCCTCTCACTGACAGGAGGGTGGCCTCGTTGT--TTCGTCACCATCAGGGGTTCTTGTCCCTATGTCTCTGTTCCTGGTTTCAGAGCCTCATCTCCTGGTAGCAC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190404056 129 - 190850796 GCCCAGCATTCAGCTTCTCCTTA-GCCC-CTCTCTCCCTGAGGGGAGGGCAGCCTAGTTTTCCTTTGGCACCACCAG-AGTGCCCGTCCC-ATGTCCTCATCCCTGG-GTCTGAGCACCTTTACCTGGCAGCAC
i calJac3.chr3             I 3323 I 6524
s mm10.chr8                 87534235 124 - 129401213 ACCCACTATTGAGCTTCCTCCCGTGCCC-CTCCCTCTCTCACTCAGGGCTGGAT---TTCC--TTTGGAGCCATCAGTTTTTCCTGTGTCTGC-TTTTTGTCCCTGGGGTTGAAGCCTTAT---CTGAGAACAC
i mm10.chr8                C 0 C 0
s canFam3.chr16             17837991 121 -  59632846 ------------GCTTCCACTCA-GCCCTCATTCTCACTAAGGAGAGGGTGGCTCAGTTTTCCTTTGGCACCACTAGTGGCTAATGTCCCCAAGCTCCCGCCTCTGGATTTGAAATCTTATTATTTGGCAGCAC
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113698504  15 + 115148730 I

a score=499806.000000
s hg38.chr4_KI270925v1_alt    144631 246 +    555799 AAAAGAACCCtgcaattcgataattttttatatattcacagagttgtgccaccatcgctacaacatgttataatatttttatcacc--ccaaaaagaacgcccccgcccattagcagccactctccattttccccagtcctcaccct-------------taggcaaacactaatgtacact-ctgtctccatca-tttgcccatcctggacatgttatatgaaagaaatcatacaacatgtggccttttgtgtctggtttct
s panTro4.chr4             192839906 246 + 193495092 AAAAGAACCCTGcaattcgataattttttatatattcacagagttgtgccaccatcgctacaacatgttataatatttttatcacc--ccaaaaagaacccccccgcccattagcagccactctccattttccccagtccccaccct-------------taggcaaacacgaatgtacact-ctgtctccatca-tttgcccatcctggacatgttatatgaaagaaatcatacaacatgtggtgttttgtgtctggtttct
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197942486 246 + 198332218 GAAAGAACCCtacaattagataatttttaatatattcacagagttgtgccaccatcgctaaaacatgttagaatatttttatcacc--ccaaaaagaacccccccgcccattagcagccactctccattttccccagtccccaccct-------------taggcaaacactaatgtacact-ctgtctccatca-tttgcccattctggacatgttatatgaaagaaatcatacaacatgtggtctttagtgtctggtttat
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183536245 246 + 184069350 GAAAGAACCCtacaattagataatttttttcatattcacagagctgtgccaccatcgctacaacatgttagaatatttttatcacc--ccaaaaagaaaccccccacccattagcagccattctccattttccccagaccccacgct-------------taggcaaccactaaggtaggct-ctgtctccatca-tttacccattctggacattttatatgaaagaaatcatacgacatgtggtcgtttgtgtctggttcct
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188919693 246 + 189454096 GAAAGAACCCtacaattagataatttttttcatattcacagagctgtgccaccatcgctacaacatgttagaatatttttatcacc--ccaaaaagaaatcccccacccattagcagccattctccattttccccagaccccacgct-------------taggcaaccactaatgtaggct-ctgtctccatca-tttacccattctggacattttatatgaaagaaatcatacgacatgtggtcgtttgtgtctggtttct
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178342045 246 + 178775436 GAAAGAACCCTACAATTAGATAATTTTTTACATATTCACAGAGCTATGCCACCATCGCTACAACatgttagaatatttttatcacc--ccaaaaagaaaccccccACCCATTAGCAGCCATTCTCCATTTTCCCCAGTCCCCACCCT-------------TAGGCAACCACTAATGTAGGCT-CTGTCTCCATCA-TTTacccattctggacattttatatgaaaGAAATCATACGACATGTGGTcgtttgtgtctggtttct
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135283229 246 + 135778131 GAAAGAACCCGacaattagataattttttacacattcacagagctgtgccaccatcgctacaacatgttagaatatttttatcacc--ccaaaaagaaaccccccacccattagcagccattctccattttcaccagtccccaccct-------------taggcaaccactaaggtaggct-ctgtctccatca-tttacccattctggacattttatatgaaagaaatcatacgacatgtggtcttttgtgtctggtttct
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87534359 242 - 129401213 -CAGAGACACTATAGGCCAATATTTTTTTTAACAATGTCACCgctgggtagccatcacaaatacattttagagtattgttttcaccatcccaaatgatactccatgtgcgttaatagtcactgcgcatctctcccaactctcagctc-------------ctacctgccatttctacggactcccctctccatca-cctgctcactctg---ccttcttaaacataaaactgtacaacatatgatc---tgtgcctgatttct
i mm10.chr8                C 0 I 1777
s canFam3.chr16             17838112 216 -  59632846 TAGGGAAACAtacaggtaaatggtttttaatatatt--cagaattgtac-------------------------------atctcc--acaatcagaaacccctc-cccatgagctgtcattctctactttctccaaaccccatccttcacctggggctctaggtaaccagtaatctacttc-ccatctctataagtgtgcccattctagatgttttatataaataaaatcatataatatgtggactttcttt----------
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190404185 6524 - 190850796 I
e nomLeu3.chr7b            113698504  15 + 115148730 I

a score=641961.000000
s hg38.chr4_KI270925v1_alt    144877 428 +    555799  
s panTro4.chr4             192840152 427 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197942732 426 + 198332218  
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183536491 493 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188919939 496 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178342291 496 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135283475 496 + 135778131  
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17838328 132 -  59632846  
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87534601 1777 - 129401213 I
e calJac3.chr3             190404185 6524 - 190850796 I
e nomLeu3.chr7b            113698504  15 + 115148730 I

a score=256052.000000
s hg38.chr4_KI270925v1_alt    145305 110 +    555799 tgatccatc--gttttgttgattc----atcagttaatggacattggtgg-----------------tggttccactttttgactattatgaatattgatgctatgaatatccacatgtgagtatttgtgtga
s panTro4.chr4             192840579 110 + 193495092 tgatccatc--gttttgttgattc----atcagttaatggacattggtgg-----------------tggttccactttttgaccattatgaatattgatgctatgaatatccacatgtgagtatttgtgtga
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197943158 110 + 198332218 tgatccatc--gttttgttgattc----atcagttaatggacattggtgg-----------------tggttccactttttgactattatgaatattgatgctatgaatatccacatgtgagtatttgtgtga
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113698519 110 + 115148730 TGATCCATC--GTtttgttgattc----atcagttaatggacattggtgg-----------------tagttccactttttgactattatgaatattgatgctatgaatatccacatgtgagtatctgtgtga
i nomLeu3.chr7b            I 15 C 0
s rheMac3.chr5             183536984 131 + 184069350 tgatccatc--gttttgttgattcattcatcggttaatggacattggtagtggttccactttttgactggttccactttttgactgttatgaatattgatgttatgaatatgcatatgtgagtatttatgtga
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188920435 119 + 189454096 tgatccatc--gttttgttgattcattcatcggttaatggacattggtagtggttccactttttgactggttccactttttgactgttatgaatattgatgttatgaatatgcatatgtaa------------
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178342787 114 + 178775436 TGATCCATC--GTTTTGTTGATTCATTCATCGGTTAATGGACATTGGTAG-----------------TGGTTCCACTTTTTGACTGTTATGAATATTGATGCTATGAATATGCATATGTGAGTATTTATGTGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135283971 114 + 135778131 tgatccatc--gttttgttgattcatttattggttaatggacattggtag-----------------tggttccactttttgactgttatgaatattgatgctatgaatatgcatatgtgagtatttatgtga
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17838460  91 -  59632846 gaatacatcaaactttattt-ttc----atcagtcaatagacatt----------------------tgattat---------------tgaataatgatgctatgaacattcatgcaggagtctttatatgg
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87534601 1777 - 129401213 I
e calJac3.chr3             190404185 6524 - 190850796 I

a score=98130.000000
s hg38.chr4_KI270925v1_alt    145415 112 +    555799 ccacatgtgagtatttgtgtgaccacatgtgcgtatttgtgtgaccacatgtgaatatttgtgtgaccacatgtgagtatttgtg---tgaccacatgtgaatatttgtgtggcc
s panTro4.chr4             192840689  68 + 193495092 ccacatgtgcgtatttgtgtgaccacatgtg--------------------------------------------agtttttgtg---tgaccacatgtgaatatttgtgtggcc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197943268 112 + 198332218 ccacatgtGCATATTTGTGTGATCACCTGTGAGTATTTGTGTGACCACCTGTGAGTATTTGTGTGACCACAtgtgaatatttgtg---tgaccacatgtaggtatttgtgtgacc
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113698629  90 + 115148730 ccatctgtgtgtatttGTGTGACCACATGTG----------------------AATATTTGTGTGGTCACATGTGCGTATTTGTG---TGACCACATGTGagtatttgtgtgacc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183537115  68 + 184069350 ccacatgtgagtatgtgtgtgaccacaggtg--------------------------------------------ggtatttatg---tgaccacatgtgagtatgtgtgtgacc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188920554  36 + 189454096 ----------------------------------------------------------------------------gtatttatg---tgaccacatgtgagtatgtgtgtgacc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178342901  68 + 178775436 CCacatgtgagtatgtgtgtgacCACAGGTG--------------------------------------------GGTATTTATG---TGACCacatgtgagtatgtgtgtgacC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135284085  68 + 135778131 ccacatgtGAGTATGTGTGTGACCACAGGTG--------------------------------------------GGTATTTATGTGA---CCACATGTGagtatgtgtgtgacc
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87534601 1777 - 129401213 I
e canFam3.chr16             17838551   0 -  59632846 C
e calJac3.chr3             190404185 6524 - 190850796 I

a score=4996012.000000
s hg38.chr4_KI270925v1_alt    145527 2087 +    555799  
s panTro4.chr4             192840757 2083 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197943380 2097 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113698719 2075 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183537183 2037 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188920590 2042 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178342969 2038 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135284153 2057 + 135778131  
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17838551 2181 -  59632846  
i canFam3.chr16            C 0 I 1394
e mm10.chr8                 87534601 1777 - 129401213 I
e calJac3.chr3             190404185 6524 - 190850796 I

a score=2464794.000000
s hg38.chr4_KI270925v1_alt    147614 1138 +    555799  
s panTro4.chr4             192842840 1134 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197945477 1124 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113700794 1185 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183539220 1110 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188922632 1110 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178345007 1115 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135286210 1106 + 135778131  
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87534601 1777 - 129401213 I
e canFam3.chr16             17840732 1394 -  59632846 I
e calJac3.chr3             190404185 6524 - 190850796 I

a score=234130.000000
s hg38.chr4_KI270925v1_alt    148752 129 +    555799 tgactttccaggactaatgctgtatggtctaaattccctgtgatgtgtgacaactaagatcctttctgggttagtgtaagaatgagatagtagtttacaagaaattttattgaaccaataaatattcaa
s panTro4.chr4             192843974 129 + 193495092 tgactctccaggactaatgctgtatggtctaaattccctgtgatgtgtgacaactaagatcctttctgggttagtgtaagaatgagatagtagtttacaagaaattttattgaaccaataaatattcaa
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113701979 129 + 115148730 tgactttccaagactaatcctgtatggtctaaattccctgtgatgtgtgacaactaagatcctttctgggttagtgtaaggacgagataatagtttgtaagaaattttattgaacgaacaagtattcaa
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183540330 129 + 184069350 tgactttccaggactaatcctgtatggtctaaattccctgtgatgtgtgacaactaagatcctttctgggttagtgtaagaatgagataatagtttttaagaaattttattgaaccagtaaatattcag
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188923742 129 + 189454096 tgactttccaggactaatcctgtatggtctaaattccctgtgatgtgtgacaactaagatcctttctgggttagtgtaagaatgagataatagtttttaagaaattttattgaaccagtaaatattcag
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178346122 129 + 178775436 tgactttccaGGACTAATCCTGTATGGTCTAAATTCCCTGTGAGGTGTGACAACTAAGATCCTTTCTGGGTTAGTGTAAGAATGAGATAATAGtttgtaataaattttattgAACCAGTAAATATTCAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135287316 129 + 135778131 tgactttctgggactaatcctgtatggtctaaattccctgtgatgtgtgacaactaagatcctttctgggttagtgtaagaatgagataatagtttgtaagaaattttattgaaccaataaatattcag
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87534601 1777 - 129401213 I
e canFam3.chr16             17840732 1394 -  59632846 I
e calJac3.chr3             190404185 6524 - 190850796 I
e ponAbe2.chr4             197946601   0 + 198332218 C

a score=253603.000000
s hg38.chr4_KI270925v1_alt    148881 104 +    555799 tgactttgcagagagtctctgcaaagttattgaacatgcatttgacacttaggcaatttacacatactgcttgcacagagcctcaaggccaaccagaggcaaaa
s panTro4.chr4             192844103 104 + 193495092 tgactttgcagagagtctctgcaaagttattaaacatgcatttgacacttaggcaatttacacatactgcttgcaccgagcctcaaggccaaccagaggcaaaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197946601 104 + 198332218 tgactttGCAGAGAGTCTCTGCAAAGTTATTGAACATGCATTTGACACTTAGGCAATTTACACATACTGCTTGCACAGAGCCTCAAGGCCAACCAGAGGCAAAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113702108 102 + 115148730 tgac--tgcagagagcctctgcaaagttattgaacatgcatttgacattcagacaatttacatgtacggcttgcagagagcctcaaggccaaccagaggcaaaa
i nomLeu3.chr7b            C 0 I 1818
s rheMac3.chr5             183540459 104 + 184069350 tgactttgcagagagtctctgcaaagttattgaacatgcatttgacactcaggcaatttacacatactgcttgcacagagcctcggggccaaccagaggcaaaa
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188923871 104 + 189454096 tgactttgcagagagtctctgcaaagttattgaacatgcgtttgacactcaggcaatttacacatactgcttgcacagagcctcagggccaaccagaggcaaaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178346251 104 + 178775436 TGACTTTGCAGAGAGTCTCTGCAAAGTTATTGAACATGCGTTTGACACTCAGGCAATTTACACATACTGCTTGCACAGAGCCTCAGGGCCAACCAGAGGCAAAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135287445 104 + 135778131 tggctttgcagagagtctctgcagagttattgaacatgcacttgacactcaggcaatttacacatactgcttgcacagagcctcaaggccaaccagaggcaaaa
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87534601 1777 - 129401213 I
e canFam3.chr16             17840732 1394 -  59632846 I
e calJac3.chr3             190404185 6524 - 190850796 I

a score=10444.000000
s hg38.chr4_KI270925v1_alt    148985 4 +    555799 gatt
s panTro4.chr4             192844207 4 + 193495092 gatt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197946705 4 + 198332218 GATT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113704028 4 + 115148730 GATT
i nomLeu3.chr7b            I 1818 C 0
s rheMac3.chr5             183540563 4 + 184069350 gatt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188923975 4 + 189454096 gatt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178346355 4 + 178775436 GATT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135287549 4 + 135778131 gatt
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87534601 1777 - 129401213 I
e canFam3.chr16             17840732 1394 -  59632846 I
e calJac3.chr3             190404185 6524 - 190850796 I

a score=139726.000000
s hg38.chr4_KI270925v1_alt    148989 49 +    555799 tcccctcgcctttgctgcccacatgcatagcAAGTTCCTGACCTGTTAG
s panTro4.chr4             192844211 49 + 193495092 tcccctcgcctttgctgcccacatgcatagcAAGTTCCTGACCTGTTAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197946709 49 + 198332218 TCCCCTCGCCTTTGCTGCCCACATGCATAGCAAGTTCCTGACCTGTTAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113704032 49 + 115148730 TCCCCTCACCTATGCTGCCCACATGCATAGCAAGTTCCTGAATTGTTAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183540567 49 + 184069350 TCGCCTCGCCTTTGCTGCCCACATGCGTAGCAAGTTCCTGACCTGGTAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188923979 49 + 189454096 TCGCCTCGCCTTTGCTGCCCACATGCGTAGCAAGTTCCTGACCTGGTAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178346359 49 + 178775436 TCGCCTCGCCTTTGCTGCCCACATGCGTAGCAAGTTCCTGAcctggtag
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135287553 49 + 135778131 tcccctcgccttcactgcccacgtgcatagcAAGATCCTGACCTGGTAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3                448677 49 + 190850796 TTCCCCCACCTTTGCTGCCTGCATGCATAGCAAGTTCCTGGCATGTTCG
i calJac3.chr3             I 1934 C 0
e mm10.chr8                 87534601 1777 - 129401213 I
e canFam3.chr16             17840732 1394 -  59632846 I

a score=28008.000000
s hg38.chr4_KI270925v1_alt    149038 7 +    555799 CTGGGAT
s panTro4.chr4             192844260 7 + 193495092 CTGGGAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197946758 7 + 198332218 CTGGGAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113704081 7 + 115148730 CTGGGAT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183540616 7 + 184069350 CTGGGAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188924028 7 + 189454096 CTGGGAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178346408 7 + 178775436 ctgggat
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135287602 7 + 135778131 CTGGGAT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3                448726 7 + 190850796 CTGGGGT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87536378 7 - 129401213 CTGGAAT
i mm10.chr8                I 1777 C 0
e canFam3.chr16             17840732 1394 -  59632846 I

a score=108736.000000
s hg38.chr4_KI270925v1_alt    149045 36 +    555799 T-TTAAGATGGTTATG-------------TAAGCC-ACATGGAAGTGGGTA
s panTro4.chr4             192844267 36 + 193495092 T-TTAAGATGGTTATG-------------TAAGTC-ACATGGAAGTGGGTA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197946765 49 + 198332218 T-TTAAGATGGTTATGTAAGATGGTTATATAAGCC-ACATGGAAGTGGGTA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113704088 36 + 115148730 T-TTAAGATGTTTGTG-------------TAAGCC-ATATGGAAGTGTGTA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183540623 36 + 184069350 T-TTAAGATGGTTACG-------------TAAGCC-ACGTGGAAGTGTGTA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188924035 36 + 189454096 T-TTAAGATGGTTACG-------------TAAGCT-ACGTGGAAGTGTGTA
i macFas5.chr5             C 0 I 11
s papAnu2.chr5             178346415 36 + 178775436 t-ttaAGATGGTTACG-------------TAAGCC-ACGTGGAAGTGTGTA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135287609 37 + 135778131 T-TTAAGATGATTACG-------------TAAGCCAACGTGGAAGTGTGTA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3                448733 37 + 190850796 TCTTAAGATGTCTAGA-------------TAAGCC-ACATGGAAGTGTGCA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87536385 37 - 129401213 TTTTATGATGTTTCCA-------------TAAACC-ACATGGAAGTACTCT
i mm10.chr8                C 0 C 0
s canFam3.chr16             17842126 33 -  59632846 t-ttaaaata---aaA-------------TAAATC-ACATGTAAGTGTGTA
i canFam3.chr16            I 1394 C 0

a score=40933.000000
s hg38.chr4_KI270925v1_alt    149081 18 +    555799 -CTTCCTTCTTTT----------CCTCCT
s panTro4.chr4             192844303 18 + 193495092 -CTTCCTTCTTTT----------CCTCCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197946814 18 + 198332218 -CTTCCTTCTTTT----------CCTCCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113704124 18 + 115148730 -CTGCCTTCTTTT----------CCTCCT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183540659 18 + 184069350 -CGTCCTTCTTTT----------CCTCCT
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178346451 18 + 178775436 -Cgtccttctttt----------cctcct
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135287646 18 + 135778131 -CGTCCTTCTTTT----------CCTCCT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3                448770 18 + 190850796 -CTTCCTTTTTTT----------CCTATT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87536422 17 - 129401213 --CTCCTTCATTT----------CTCTTC
i mm10.chr8                C 0 I 3
s canFam3.chr16             17842159 29 -  59632846 CTTTCCTTTTTTTAAAAAAATCAATTCCA
i canFam3.chr16            C 0 C 0
e macFas5.chr5             188924071 11 + 189454096 I

a score=1600183.000000
s hg38.chr4_KI270925v1_alt    149099 496 +    555799  
s panTro4.chr4             192844321 496 + 193495092  
i panTro4.chr4             C 0 I 4
s ponAbe2.chr4             197946832 494 + 198332218  
i ponAbe2.chr4             C 0 I 4
s nomLeu3.chr7b            113704142 496 + 115148730  
i nomLeu3.chr7b            C 0 I 28
s rheMac3.chr5             183540677 483 + 184069350  
i rheMac3.chr5             C 0 I 2
s macFas5.chr5             188924082 479 + 189454096  
i macFas5.chr5             I 11 I 2
s papAnu2.chr5             178346469 496 + 178775436  
i papAnu2.chr5             C 0 I 2020
s chlSab2.chr7             135287664 500 + 135778131  
i chlSab2.chr7             C 0 I 10
s calJac3.chr3                448788 475 + 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87536442 469 - 129401213  
i mm10.chr8                I 3 C 0
s canFam3.chr16             17842188 480 -  59632846  
i canFam3.chr16            C 0 C 0

a score=916827.000000
s hg38.chr4_KI270925v1_alt    149595 355 +    555799 atatatatatacacacaca----tatatacacacatatatttaaagtaaaatatatatataaactaatatatat---------tatatat-aAAGTAAAATCTAACTTGATTTCAACCTTAAAGTATTCATAACTCTCTTAGCCCTTAAATACCAATATGTCTTGAATATGG-CC-----TAGGGATAA----------------------A----GAAGGGGTCGCTTACTTAGGTCCC-AAGCGAAATTGTCAAGGATTCTGTTTAGCCACAAAAGCCGTTAGGAAAAGGGCACTGAAGCTCTATGACAGTAGGCACAGAGAACTACCAGATTATCTGAGCTTCAGATTCCAATTTCATTTCCGCTCAGTTTGCAA--GCTGTTTCTACAACCATGATTTCC
s panTro4.chr4             192844821 353 + 193495092 atatatatatacacacacacacatatatacacacatatatTTAAAGTAAAATATA------AACTAGTATATAT---------TATATAT-AAAGTAAAATCTAACTTGATTTCAACCTTAAAGTATTCACAATTCTCTTAGCCCTTAAATACCAATATGTCTTGAATATGG-CC-----TAGGGATAA----------------------A----GAAGGGGTCGCTTACTTAGGTCCC-AAGCGAAATTGTCAAGGATTATGTTTAACCACAAAAGCCATTAGGAAAAGGGCACTGAAGCTCTATGACAGTAGGCACAGAGAACTACCAGATTATCAGAGCTTCAGATTCCAATCTCATTTCCGCTCAGTTTGCAA--GCCGTTTCTACAACCATGATTTCC
i panTro4.chr4             I 4 C 0
s ponAbe2.chr4             197947330 359 + 198332218 atatgtatatacacacacacacatatttacacacatatatttaaagtaaaatatatatataaactaatatatat---------tatatat-aAAGTAAAATCTAACTTGATTTCAACCTTAAAGTATTCGTAACTCTCTTAGCCCTTAAATACCAATATGTCTTGAATATGG-CC-----TAGGGATAA----------------------A----GAAGGGGTCGCTTACTTAGGTCCC-AAGCAAAATTGTCAAGGAGTATGTTTAGCCACAAAAGCCATTAGGAAAAGGTCACTGAAGCTCTATGACAGTAGGCACAGAGAACTACCAGATTATCTGAGCTTCAGATTCCAACCTCATTTCCACTCAGTTTGCAA--GCCGTTTCTATAACCATGATTTCT
i ponAbe2.chr4             I 4 C 0
s nomLeu3.chr7b            113704666 355 + 115148730 atatatataaatgcacacagacatatatacacacatatatttaaaataaaa---aaatataaactaatatatat---------tgtatat-aaaataaaatCTAACTTGATTTCAACCTTAAAGTATTCATAACTCTCTTAGCCCTTAAATACCAGTATTTCTTGAATATGG-CC-----TAGGGATAA----------------------A----GAAGGGGTCGCTTACTTAGGTCCC-GAGAGAAATTGTCAAGGATTATGTTTAGCCACAAAAGCCCTTAGGAAAAGGGCACTGAAGCTCTATGACAGTAGGCACAGAGAACTACCAGATTATCTGAGCTTCAGATTCCAATCTCATTTCCACTAAGTCTGCAA--GCTGTTTCTACAACCACGA-TTCC
i nomLeu3.chr7b            I 28 C 0
s rheMac3.chr5             183541162 359 + 184069350 Ctatatatatatatataca----cacacacacacatataTTTAAAGTAAAACAAA---ATAAGCtaatatacatataa--taatatatat-ataataaaatCTAACTTGATTTCAACCTTAAAGTATTCATAACTCTCTTTGCCCTTAAATACCAATATGTCTTGAATACTG-CC-----TAGGGATAA----------------------A----GAAGGGGCCACTTACTTAGGTCCC-AAGTGAAATTGTCAAGGATTATGTTTAGCCACAAAAGCCATTAGGAAAATGGCACTGAAGCTCTATGACAGCAGGCACAGAGAACTACTAGATTATCTGAGCTTCAGATTCCAATCTCATGTCCACTCAGTTTGCAA--GCTGTTTCTGTAACCATGATTTCC
i rheMac3.chr5             I 2 C 0
s macFas5.chr5             188924563 359 + 189454096 ctatatatatatatataca----cacacacacacatatatttaaagtaaaacaaa---ataagctaatatacatataa--taatatatat-ataataAAATCTAACTTGATTTCAACCTTAAAGTATTCATAACTCTCTTTGCCCTTAAATACCAATATGTCTTGAATACTG-CC-----TAGGGATAA----------------------A----GAAGGGGCCACTTACTTAGGTCCC-AAGTGAAATTGTCAAGGATTATGTTTAGCCACAAAAGCCATTAGGAAAATGGCACTGAAGCTCTATGACAGCAGGCACAGAGAACTACTAGATTATCTGAGCTTCAGATTCCAATCTCATGTCCACTCAGTTTGCAA--GCTGCTTCTGTAACCATGATTTCC
i macFas5.chr5             I 2 C 0
s papAnu2.chr5             178348985 349 + 178775436 gtatatatgtacatatgca----tatatatacacatatatttaaagtaaa---------------aatatatatataagctaatatatat-aaaataaaatctaacttgATTTCAACCTTAAAGTATTCATAACTCTCTTCGCCCTTAAATACCAATATGTCTTGAATACAG-CC-----TAGGGATAA----------------------A----GAAGGGGTCACTTACTTAGGTCCC-GAGTGAAATTGTCAAGGATTATGTTTAGCCACAAAAGCCATTAGGAAAATGGCACTGAAGCTCTATGACAGCAGGCACAGAGAACTACCAGATTACCTGAGCTTCGGATTCCAATCTCATGTCCACTCAGTTTGCAA--GCTGTTTCTGTAACCATGATTTCC
i papAnu2.chr5             I 2020 C 0
s chlSab2.chr7             135288174 334 + 135778131 atatatatgtacatataca----tatatatacacatatatttaaagtaaaa--------------aatgtatatataA---------------AATAAAATCTAACTTGATTTCAACCTTAAAATATTCATAACTCTCTTAGCCCTTAAACACCAATATGTCTTGAATACTG-CC-----TAGGGATAA----------------------A----GAAGGGGTCTCTTACTTAGGTCCC-GAGTGAAATTGTCAAGGATTATGTTTAGCCACAAAAGCCATTAGGAAAATGGCACTGAAGCTCTATGACAGCAGG--CAGAGAACTACCAGATTATCTGAGCTTCAGATTCCAATCTCATGTCCACTCAGTTTGCAA--GCTGTGTCTGTAACCATGATTTCC
i chlSab2.chr7             I 10 C 0
s calJac3.chr3                449263 290 + 190850796 --------------------------------------------AGTAAAATACA----------------------------TATCTAT-AAAGTAAAATCTAACTTGATTTCAACCTTAAAGTATTCATAACTGTCTTAG--CTTAAACACCTGTATGCCTTGAAAATGG-CC-----TAGGGATAA----------------------A----GAAGGGGTCT----CTTAGGTCCC-ATGCAGAATCCTAAAGGATTGTTTTTAGCCACAAAAGCCGTGAGGAAAATGCCACTGAAGCTGtatgacagtaggtacagagaactcccagattctccaagcttcacactcagatctcatctctactcagtttgcaa--actgtttctgtgacctctatctcc
i calJac3.chr3             C 0 T 81724
s mm10.chr8                 87536911 293 - 129401213 ------------------------------------ATATCATAAGGATA---------------------------------TCTTTAT-GAGGCAAAGTCCAACTGGATATCAGCTTGATCAT-TTTTTAATGCTGTTAACTGTTAAGTGCCAGTATGTCTCAAACATTTCCC-----CATGTGTAACTAAATATGCTTATTGTCCCATA----GAAGCAAACACATCTTTAGACCTT-GAATTCAATCCCCAAGGGTTAC-CTTAACAGTAAGAGCCAATTTTAA---GTCCCTGTAGTTACCTGA---------CAGAGAATTGCT-------------CTCATGGTCCAATCTTGACTCTGCTCATTTTTGAT--ACTATTTTAATAGACATTATCT--
i mm10.chr8                C 0 C 0
s canFam3.chr16             17842668 270 -  59632846 --------------------------------------------------------------------------------------TTATGGAAACAATATTCAATTTCATTTTGACCTTGAAGTATTTACAATTCT-TTAATATTTAAATACCAATATGTCTCAAATATGG-CCTTATGTAGAGATAA----------------------ATAGGGAAGGGATC--TTACTTAGACCTTAAAGCACAACC--------TGATCTGTAGCCACAAGAACCATAA--AAAAGGCCACTGAAGCTATATGCTGGTAAGCCTAAAGGATCATCAG-TCATCTAAGTCTCATGTTCCAATCTCATTTCTACCCAGTTTCATATTATTATTTTTTTAA-----------
i canFam3.chr16            C 0 C 0

a score=966728.000000
s hg38.chr4_KI270925v1_alt    149950 347 +    555799 CTCTCCCCAGTCTCCTGTGAGTGATggct--gc--cgggacggcctgtcggc-tgct----ggctcacggctcccagcctgcggtttccagtgc-cTGTGCGCTCCATTGCCAGTGGTTCTTGTCTAGGAGAGGTGCCA-TTCCCACTGCAAAATTCTGCATGTACGTTTGACATGCTCACTTCCTTACAGCA-G--CTTTAATCTGTCACATACTTGCTCAGGAGCCTTCAACAACCTTCCGTGTCCTACTTCACCCATCCAGACTCTTCATGGCTTTGAAGGACTCCAC-TGCACGACTGGA-CCTCATTTC---------CTAACCAGGTCGCTCGCCACT-----CC----CACTCCTCACCCAAAGCAGATAAACT
s panTro4.chr4             192845174 347 + 193495092 CTCTCCCCAGTCTCCTGTGAGTGATGGCT--GC--CGGGACGGCCTGTCGGC-TGCT----GGCTCACGGCTCCCAGCCTGCGGTTTCCAGTGC-CTGTGCGCTCCATTGCCAGTGGTTCTTGTCTAGGAGAGGTGCCA-TTCCCACTGCAAAATTCTGCATGTACATTTGACATGCTCACTTCCTTACAGCA-G--CTTTAATCTGTCACATACTTGCTCAGGAGCCTTCAACAACCTTCCGTGTCCTACTTCACCCATCCAGACTCTTCATGGCTTTGAAGGACTCCAC-TGCATGACTGGA-CCTCATTTC---------CTAACCAGGTCGCTCGCCACT-----CC----CACTCCTCACCCAAAGCGGACAAACT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197947689 338 + 198332218 GTCTCCCTC-TCTCCTGTGAGTGATGGCT--GC--TGGGA--------CGGC-TGCT----GGCTCACGGCTCCCAGCCTGCCATTTCCAGTGC-CTGTGCGCTCCATTGCCAGCGGTTCTTATCTAGGAGAGGTACCA-TTCCCACTGCAAAATTCTCCATGTACGTTTGACATGCTCACTTCCTTACAGCA-G--TTTTAATCTGTCACATATTTGCTCAGGAGCCTTCAACAACCTTCCGTGTCCTACTTCACTCATCCAGACTCTTCATGGCTTTGAAGGACTCCAC-TGCATGACTGGA-CCTCATTTC---------CTAACCAGGTTGCTCGCCACT-----CC----CACTCCTCACCCAAAGCAGATAAACT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113705021 346 + 115148730 CTCTCCCCAGTCTCCTGTGAGtgatggct--gc--tggcatggcctgttggc-tgct----ggctcctggctCCCAGCCTGCCGTTGCGAGTGC-CTGTGCACTCCATTGCCAGTGGTTCTTGTCCAGGAGAGGTACCA-TTCCCAGTGCAAAATTCTCCATGTACATTCGACATGCTCACTTCCTTACAACA-G--TTTTAATCGGTCACATACGTGCTCAGGAGCCTTCAACAACCTTCCGTGTCCTACTTCAC-CATCCAGACTCTTCACGGCTTTGAAGGACTCCAC-TGCATGACTGGA-CCTCATTTC---------CTCACCAGGTTGCTCACTACT-----CC----CACTCTTCAACTAAAGCAGATAAACT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183541521 346 + 184069350 CTCTCCCCAGTCTCCTGTGAGTGATGGCT--GC--TGG-ATGGCCTGTCGGC-TGCT----GGCTCACAGCTCCCAGCCTGCCGCTTCGAGGGC-CTGTGGGCTCCATTGCCAGTGGTTCTCGTCTAGGAGAGGTACCATTTCCCACTGCAAAATTCTCCATGTACGTTCAACATGCTCCCTTCCTTACAGCA-G--TTTTAATCTGTCACAGACTTGCTCAAGAACGTTCAACAACCTTCCGTGCCCTGCTTCACCCACCCAGACTC-TCACGGCGTCCAAGGACTCCAC-TGCCTGGGTGGA-CCTCATTTC---------CTAACCAGGATGCTTGCTGCT-----CC----CACTCCTCACCCAAGGCAGATAAACT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188924922 346 + 189454096 CTCTCCCCAGTCTCCTGTGAGTGATGGCT--GC--TGG-ATGGCCTGTCGGC-TGCT----GGCTCACAGCTCCCAGCCTGCCGCTTCGAGGGC-CTGTGGGCTCCATTGCCAGTGGTTCTCGTCTAGGAGAGGTACCATTTCCCACTGCAAAATTCTCCATGTACGTTCAACATGCTCCCTTCCTTACAGCA-G--TTTTAATCTGTCACAGACTTGCTCAAGAACGTTCAACAACCTTCCGTGCCCTGCTTCACCCACCCAGACTC-TCATGGCGTCCAAGGACTCCAC-TGCCTGAGTGGA-CCTCATTTC---------CTAACCAGGATGCTTGCTGCT-----CC----CACTCCTCACCCAAGGCAGATAAACT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178349334 346 + 178775436 CTCTCCCCAGTCTCCTGTGAGTGATGGCT--GC--TGG-ATGGCCTGTCGGC-TGCT----GGCTCACAGCTCCCAGCCTGCCGCTTTGAGGGC-CTGTGGGCTCCGTTGCCAGTGGTTCTCGTCTAGGAGAGGTACCATTTCCCACTGCAAAATTATCCATGTACGTTCGACATGCTCCCTTCCTTACAGCA-G--TTTTAATCTGTCACATAGTTGCTCAAGAACATTCAACAACCTTCCGTGCCCTGCTTCACCCACCCAGACTC-TCACGGCGTCCAAGGACTCCAC-TGCCTGAGTGGA-CCTCATTTC---------CTAACCCGGATGCTTGCTGCT-----CC----CACTCCTCACCCAAGGCAGATAAACT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135288508 338 + 135778131 CTCTACCCAGTCTCCTGTGAATGATGGCT--GC--TGG-GTGGCCTGTCGGC-TGCT----GGCTCACGGCTCCCAGCCTGCCGTTTCGAAGGT-CTGTGGGCTCCATTGCCAGTGGTTCTTGTCTAGGAGAGGTACCATTTCCCACTGCAAAATTCTCCATGTACGTTCGACATGCTCCCTTCCTTACAGCA-G--TTTTAATCTGCCACATACTTGCTCAAGAACGTTCAACAA----CCGTGCCCTGCTTCACCCACCCAGACTC-TCACGGCATCCAAGGACTCCA-----CTGAGTGGA-CCTCATTTC---------CTAAGCAGGATGCTTGCTACT-----CC----CGCTCCTCACCCAAGGCAGATAAACT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190410709 338 - 190850796 CTCTTCCCAGCCTCCT-CGAGTGACGGCC--AC--TGGGAAAGCCTGCCGGC-TGCT----TGCTCACGGCT-CCAGGCTGCC-TTTAGAGCAC-CTGTGCGCTCCATCGCCAGGGGTGCTTGTCTAGGGGAGGCGCCACTTACCACTCCAGAATTCTCCACGAACCTTCAGCATGCCCACTTCCTCACAGCA-G-TTTTTAATCTGTCACGTACTTGCTCAGAGACTTTCAACA-------GTGTTCTACTGTAGCCATCCAGACCCTTCATGGCTTTCAAGGACCCCAG-CACATGACTGGA-CCTCATTTA---------CT-ACCAGATCGTTTGCTGCT-----CC----AACTCCTCACCCAAAGCAGATAAACT
i calJac3.chr3             I 6524 C 0
s mm10.chr8                 87537204 345 - 129401213 ---TTCCAGGTTCCCTTAGAAGGATAAATTCAC--TGG-ACAACATTTCCTCTTACT----TGCTTACTGCTCCAAGAACCCCTT----AGAGA-CTGAAGGTTTCCCT--CTGTCCTTCTTATCTAGGATAATATTCC-TTACTACTTCAGCATTCACTATATGCTGTTGCCATGCCAA---CCTTATATTGTA--TTTCTATCTTTCACACATTTGCTTGGAAAAGTCCAATGGC--TCCCTTCCTTTCTGTCCAAGGCCCAGTCCTATAAAGCTTCTAAAACTCCAAC-TACATGATTTAA----TACTTCTATGAAAATTTAATGAAACTGCTTATAACTTATAACT----CACACCTC--CCAAAGCAGATTAACT
i mm10.chr8                C 0 I 363
s canFam3.chr16             17842938 353 -  59632846 CTTTTACCAGTAGTTTCAGAGTGATGACT--CCTTTGG-ATAGTATATCAGG-TGTTTTGCTTCTTTTTGCTCTAACACTGCCTTTTAGAGTACTCAGTGGGCTCCACTTCCAG---------TCCAGTAGTGGTGCCATTTACCAATCTACCCTTTTCCATATGCTACTGCCATACTAAGTTTCTTATGGTG-ATTTTTTAATCCATCACATATCTGCTCAGAAACCTTTAATAACTCTCCATTTCTTACTGTACCAACCCAGAGTCTCCACAACTTTCAAGGATTTCAGATTTATGGTTGAATCCTGGAAAT---------CCAACATAATTACCTGCTACT-----CCATAACCCATATCACCCAGAGCAAATAAACT
i canFam3.chr16            C 0 C 0

a score=76740.000000
s hg38.chr4_KI270925v1_alt    150297 25 +    555799 GATCTACCCTGTTCTTCTCCCCACT
s panTro4.chr4             192845521 25 + 193495092 GATCTACCCTGTTCTTCTCCCCACT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197948027 25 + 198332218 GATCTACCCTGTTCTTCTCCCTACT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113705367 25 + 115148730 GATCTATCCTGTTCTTCTCCCTACT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183541867 25 + 184069350 CATCCACCCTGTTCTTCTCCCTACT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188925268 25 + 189454096 CATCCACCCTGTTCTTCTCTCTACT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178349680 25 + 178775436 CATCCACCCTGTTCTTCTCCCTACT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135288846 25 + 135778131 CATCTACCCCGTTCTTTTCCCTACT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190411047 25 - 190850796 GACCTGCCCTTTTCTTCTCCCTCCT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17843291 25 -  59632846 GATCTTCCGTTATCTTCCCCCAACT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87537549 363 - 129401213 I

a score=254019.000000
s hg38.chr4_KI270925v1_alt    150322 69 +    555799 GACCTTCGTACTGTTCTTTCCATATGGCCTAGTTTAAATCGGTTTCCTCCTTGTGACTCTATAAATACT
s panTro4.chr4             192845546 69 + 193495092 GACCTTCGTACTGTTCTTTCCATATGGCCTAGTTTAAATCGGTTTCCTCCTTGTGACTCTATAAATACT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197948052 69 + 198332218 GACCTTCGTACTATTCTTTCCGTATGGCCCAGTTTAAATCAGTTTCCTCCTTGTGACTCTATAAATACT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113705392 69 + 115148730 GACCTTCATACTATTCTTTCTGTATGGCCCAGTTTAAATCCGTTTCCTCCTTGTGACTCTATAAATACT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183541892 69 + 184069350 GACCTTCGTACGATTCTTTCCGTATGGCCCAGTTTAAATCCGTTCCCTCCTCGTGACTCTATAAATACT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188925293 69 + 189454096 GACCTTCGTACGATTCTTTCCGTATGGCCCAGTTTAAATCCGTTCCCTCCTCGTGACTCTATAAATACT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178349705 69 + 178775436 GACCTTCGTACGATTCTTTCCGTATGGCCCAGTTTAAATCAGTTCCCTCCTTGTGACTCtataaatact
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135288871 69 + 135778131 GACCTTCGTACGATTCTGTCCGTATGGCCCAGTTTAAATCCGTTCCCTCCTTGTGACTCTATAAATACT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190411072 63 - 190850796 GACCTTCATACTATTCT----GTATGGCCCGGTTTAAATCGGTTTCTTCCTTGTGACTC--TAAATACC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87537912 68 - 129401213 GACATCAATACTGTCTTCAATG-ATGTCCCAAGTTCAATTACTCTTCTTCCTGTGACTTTATAAATACT
i mm10.chr8                I 363 I 458
s canFam3.chr16             17843316 69 -  59632846 GACCTTAATATTGTTCTTTATTTATGGCCCAGCTTAAAATGGTTTTCTTCTTGTTACTCTATAAATACT
i canFam3.chr16            C 0 C 0

a score=309902.000000
s hg38.chr4_KI270925v1_alt    150391 105 +    555799 ATTTTTGTTGTCATTGTCATTGCTGTTGATATTGGTTTACAGTTTAATGTCTCCATAA----TGAAtatggtgaccatacaatttattacaatttattgtccaaaccag
s panTro4.chr4             192845615 105 + 193495092 ATTTTTGTTGTCATTGTCATTGCTGTTGATATTGGTTTACAGTTTAATGTCTCCATAA----TGAATATGGTGACCATACAATTTATtacaatttattgtccaaaccag
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197948121 105 + 198332218 GTTTTTGTTGTCATTGTCATTATTGTTGATATTGGTGTACCGTTTAATGTCTCCATAA----TGAATATGGTGACCATACAATTTATtacaatttattgtccaaaccag
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113705461 105 + 115148730 GTTTTGGTTGTCAGTGTCATTACTGTTGATATTGGTTTACAGTTTAATGTCTCCATAA----TGAATATGGTGACCATACAATTTATtacaatttattgtccaaaccag
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183541961  95 + 184069350 GTTTTTGTTATCATTGTCATTGCTGTTGACATTGGTTTACAGTTTAATTGCTCCATAA----TGAATATAgtgacca----------tacaatttattgtccaagccag
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188925362  95 + 189454096 GTTTTTGTTATCATTGTCATTGCTGTTGACATTGGTTTACAGTTTAATTGCTCCATAA----TGAAtatggtgacca----------tactatttattgtccaagccgg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178349774  95 + 178775436 gtttttgttgtcattgtcatTGCTGTTGACATTGGTTTACAGTTTAATTGCTCCATAA----TGAATATGGTGACCA----------TACAATTTATTGTCCAAACTAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135288940  95 + 135778131 GTTTTTGTTGTCATTGTCATTGCTGTTGACATTGGTTTACAGTTTAATTGCTCCATAA----TGAAtatggtgacca----------tataatttatggtccaaaccag
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190411135  93 - 190850796 GTTTTAGTTGTCATTGTCATTGCTGTTGATATTGGTTTACAGTTTAGTTTCTCCATGA----TGA--GTggtgacta----------tacaatttatggtccaaactag
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17843385  99 -  59632846 ATTTTTGATGTCACTGTTATTGGTGTGGATATTGGTTTAGAGTTTTATTTACCAATGATAGCTAAAtatggtgacta----------taaaacttattgtccaaaccag
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87537980 458 - 129401213 I

a score=957547.000000
s hg38.chr4_KI270925v1_alt    150496 273 +    555799 gatacttttgagagtgagggcgtttctattaatgaaatacctgggcaagaggcataggccag-atgttttagg----ctg--------aggctgctcagagcaagccaggccaca---taggcacctta-TTTTAGTACATTTTAAAATAACATTTTAAGAATATTTATTGAAATATTACAAGTTAGATGATTATTGACCAAATTAAAATTCTACTTTGGACTCAGGTTTAATTGCCAAGGA-AAGAAAAAGCAGCTACAATCTTAACAACTTAGAGAAACGCCAACTTGA
s panTro4.chr4             192845720 267 + 193495092 gatacttttgagagtgagggcgtttctattaatgaaatacctgggcaagaggcataggccag-atgttttagg----cTG--------AGGCTGCTCAGAGCAAGCCAGGCCACA---------CCTTA-TTTTAGTACATTTTAAAATAACATTTTAAGAATATTTATTGAAATTTTACAAGTTAGATGATTATTGACCAAATTAAAATTCTACTTTGGACTCAGATTTAATTGCCAAGGA-AAGAAAGAGCAGCTACAATCTTAACAACTTAGAGAAACGCCAACTTGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197948226 273 + 198332218 gatacttttgagagtgagggggtgtctgttaatggaatacctgggcaagaggcataggccag-atgttttagg----cTG--------AGGCTGTTCAGAGCAAGCCAGGCTGCA---CAGGCACCTTA-TTTTAGTACATTTTAAAATAACATTTTAAGAATATTTATTGAAATTTTACAAGTTAGATGATTATTGACCAAATTAAAATTCTACTTTGGACTCAGATTTAATTGCCAAGGA-AAGAAAAAGCAGCTACAATCTTAACAACTTAGAGAAACACCAACTTGA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113705566 273 + 115148730 gatacttttgagagtgagggggtttctattaatgaaatacctgggcaagaggcataggccag-acgttttagg----cTG--------ACGCTGTTCAGAGCAAGCCAGGCCGCA---CAGGCACCTTA-TCTTAGTACATTTTAAAATAACATTTTAAGAATATTTATTGAAATTTTACAAGTTAGATGATTATTGACCAAATTAAAATTCTACTTTGGACTCAGATTTAATTGCCAAGGA-AAGAAAAAGCAGCTACAATCTTAACAACTTAGAGAAACGCCAACTTGA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183542056 273 + 184069350 gatacttttgtgagtgagggggtttctactaatgaaatacctgggtaagaggcataggccgg-acattttagg----cTG--------AGACTGCTCAGAGCAAGCCAGGCCGCA---CAGGCACTGTA-TTTTAGTACATTTTAAAATAGCATTTTAACAATATTTATTGAAATTTTACAAGTTAGATGATTATTGACCAAATTAAAATTCTACTTTGGACTCAGATTTAATTGCCAAGAA-AAGAAAAAGCAGCTACAATCTTAACAACTTAGAGAAACGCCAACTCGA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188925457 273 + 189454096 gatacttttgtgagtgagtgggtttctactaatgaaatacctgggtaagaggcataggccgg-acattttagg----cTG--------AGACTGCTCAGAGCAAGCCAGGCCGCA---CAGGCACTGTA-TTTTAGTACATTTTAAAATAGCATTTTAACAATATTTATTGAAATTTTACAAGTTAGATGATTATTGACCAAATTAAAATTCTACTTTGGACTCAGATTTAATTGCCAAGAA-AAGAAAAAGCAGCTACAATCTTAACAACTTAGAGAAACGCCAACTCGA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178349869 273 + 178775436 GATACTTTTGTGAGTGAGTGGGTTTCTACTAATGAAATACCTGGGTAAGAGGCATAGGCCGG-ACGTTTTAGG----CTG--------AGACTGCTCAGAGCAAGCCAGGCCGCA---CAGGCACCGTA-TTTTAGTaccttttaaaatagcattttaacaatatttattgaaattttacaAGTTAGATGATTATTGACCAAATTAAAATTCTACTTTGGACTCAGATTTAATTgccaagga-aagaaaaagcagctACAATCTTAACAACTTAGAGAAACGCCAACTCGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135289035 273 + 135778131 gatacttttgcaagtgagggggtttctactaatgaaatacctgggtaagaggcataggccgg-acattttagg----cTG--------AGACTGCTCAGAGCAAGCCAGGCCGCA---CAGGCACCGTA-TTTTAGTACATTTTAAAATAACAATTTAAGAATATTTATTGAAATTTTACAAGCTGGATGATTATTGACCAAATTAAAATTCTACTTTGGACTCAGATTTAATTGCCAAGGA-AAGAAAAAGCAGCTACAATCGTAACAACTTAGAGAAACGCCAACTCGA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190411228 279 - 190850796 gatacttttgagagtgaggg-gtttctgttaatgagatacctgggcaagaggcacaggccag-accttttaggccatctg--------agaATGTTCTGAGCAAGCCAGGCGACAGGCCATGTGCCttattttttatacatttaaaaataacatttaaaaattatCTATTGAAGTGTTACAAGTTAGACAGTT-TTGACCAAATTAAAATTCTACTTTGGACTCATATTTAATTACCAAGGA-AAGAAGAAGCAATTACAATCTTAACAACTTAGAGAAATGGCAACTTGA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87538438 270 - 129401213 gatacttttgaaagtggaagggatgtcattggagatacacctagacaagtagcataaaccagaacgttccagT----CTGGAACTCAAAGATTCTCCCAAGCAAACTGGGTCTTA---CCGCTACCTTA----AAGGACATTTTTTTATAAAATTTTAAGAAATAGCATTGAACTTTTACAAATTGGA-AATTAGTGACCAAGTTATAACCCTAATTTGTATTCATAAATAGCTACCAAGGA-AAGAAAGTGTGAATAGAATCTTAA--------AGGAATGCAAACAGAC
i mm10.chr8                I 458 C 0
s canFam3.chr16             17843484 272 -  59632846 gacacttttaaaagtaaagggaatgctattaatgatatagctggacaaaaggcataagccacaatgcttcaggcaaactg--------ggacagtcacAAGCAAACCAGATCTCT---TAGCCACCTTA---TAAGATGATCTGTTTATAAAATTTTAAAGAT-TATATTGCA----TACAAATTAAAATATCATTAACCAAATTATAACTCTATTTTGGACTCATATTTAACTACCAAGGAGAAAAAAGAGCTGATAAAATCTTAATAACTTAGAGAAATACAAACCTGA
i canFam3.chr16            C 0 C 0

a score=489502.000000
s hg38.chr4_KI270925v1_alt    150769 164 +    555799 CATTAAAATAGTGACTTCCCTGCCAGAGATTTTCCTGTTTTGCTTATCATGCTAAGCTACCTTTTAAAGAGATAAAATAAATGTAATAGATCAGCAAT-TTCTGTGTTAATTTGAACATGGTTGGTGT---TTATTATTATTATCCATAAAC-----TAAGAAAGTCTCAGTG
s panTro4.chr4             192845987 164 + 193495092 CATTAAAATAGTGACTTCCCTGCCAGAGATTTTCCTGTTTTGCTTATCATGCTAAGCTATCTTTTAAAGAGATAAAATAAATGTAATAGATCAGCAAT-TTCTGTGTTAATTTGAACATGGTTGGTGT---TTATTATTATTATCCATAAAC-----TAAGAAAGTCTCAGTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197948499 164 + 198332218 CATTAAAATAGCGACTTCCCTGCCAGAGATTTTCCTGTTTTGCTTATCATGCTAAGCTACCTTTTAAAGAGATAAAATAGATGTAACAGATCAGCAAT-TTCTGTGTTAATTTGAACATGGTTGGTGT---TTCTTATTATTACCCACAAAC-----TAAGAAAGTCTCAGTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113705839 164 + 115148730 CATCAAAATAGCGACTTTCCTGCCAGAGATTTTCCTGTTTTGCTTATCATGCTAAGCTACCTTTTAAAGAGATAAAATAAATGTAATAGATCAGCAAT-TTCTGTGTTAATTTGAACATGGTTGGTGT---TTATTATTATTATCCATAAAC-----TAAGAAAGTCTCAGTG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183542329 164 + 184069350 CTTTAAAATAGCGACTTTCCTGCCAGAGATTTTCCCGTTTTGCTTATCATGCTAAGCTGCCTTTTAAAGAGCTAAAATAAACTTAATAGATCAGCAAT-TTCTGTGTTAATCTGAACATGGTAGGTGT---TTATTATCATTATCCATAAAC-----TAAGACAGTCTCAGTG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188925730 164 + 189454096 CTTTAAAATAGCGACTTTCCTGCCAGAGATTTTCCCGTTTTGCTTATCATGCTAAGCTGCCTTTTAAAGAGCTAAAATAAACTTAATAGATCAGCAAT-TTCTGTGTTAATTTGAACATGGTTGGTGT---TTATTATCATTATCCATAAAC-----TAAGACAGTCTCAGTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178350142 164 + 178775436 CTTTAAAATAGCGACTTTCCTGCCAGAGATTGTCCCGTTTTGCTTATCATGCTAAGCTGCCTtttaaagagctaaaataaaCTTAATAGATCAGcaat-ttctgtgttaatttgaaCATGGTTggtgt---ttattatcattatccatAAAC-----TAAGACAGTCTCAGTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135289308 164 + 135778131 CTTTAAAATAGCGACTTTCCTGCCAGAGATTTTCCCGTTTTGCTTATCATGCTACGCTGCCTTTTAAAGGGATAAAATAAATTTAATAGATCAGCAGT-TTCTGTGTTAATTTGAACATGGTTGGTGT---TTATTATTATTATCCATAAAC-----TAAGACAGTATCAGTG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190411507 171 - 190850796 TTTTAAAATAGCTACTTCCCTGCCAGAGATTTCTCTGTTTTGCTTATCATGGTAAGCTACCTTTTAAAGAGA-AAAATAAATTTAATACATCAGCAAT-TTCTGTGTTAATCTGAACATGGTTGGTGTTTATTATTATTATTATTCATACACTACTTTAAGAAACTCTCGGTA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87538708 125 - 129401213 TCTTAAAATAGGTGCTTTTTTACTGCA------TCTATTTGTCTCAGC-------------------------------------ACAGTCCACCAATGTTCTATGTTAATATGAACATGATTAGCTG---TTG--GCTATTACCAATAAAATAGTTTAAGAAACTATTAGTA
i mm10.chr8                C 0 C 0
e canFam3.chr16             17843756   0 -  59632846 C

a score=3192751.000000
s hg38.chr4_KI270925v1_alt    150933  997 +    555799  
s panTro4.chr4             192846151  997 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197948663 1016 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113706003  997 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183542493  987 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188925894  987 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178350306  990 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135289472  984 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190411678  954 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87538833  993 - 129401213  
i mm10.chr8                C 0 I 105
s canFam3.chr16             17843756  954 -  59632846  
i canFam3.chr16            C 0 C 0

a score=337491.000000
s hg38.chr4_KI270925v1_alt    151930 105 +    555799 TTTTTTTT--------------AACGTTCAGCTTTTTAAAATCAGTGCTTTGTGATCCTCTG-GCACAT--CACACATGTGTTCGGGTGTCCCCAGAGAA---GCATTTT-CTCAGACCCTCCTTA
s panTro4.chr4             192847148 105 + 193495092 TTTGTTTT--------------AATGTTCAGCTTTTTAAAATCAGTGCTTTGTGATCCTCTG-GCACAT--TACACATGTGTTCGGGTGTCCCCAGAGAA---GCATTTT-CTCAGACCCTTCTTA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197949679 105 + 198332218 TTTTTTTT--------------AATGTTCAGCTTTTAAAAATCAGTGTTTTGTGATCGTCTG-GCACAT--CACACACATGTTCGGATGTCCCCAGAGAA---GCATTTT-CTCAGACCCTCCTTA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113707000 106 + 115148730 TTTTTTTT-------------AAATGTTCAGCTTTTAAAAATCAGTGCTTTGTGATCCTCTG-GCACAT--CACACACGTGTGCGGGTGTCCCTAGAGAA---GCATTTT-CTCAGACCCTCCTTA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183543480 106 + 184069350 TTTTTTTT-------------TAATGTTCAGCTTTTAAAAACCAGTGCTTTGTGATCCTCTG-GCACAT--CACACACGTTTTCGGGTGTCCCCAGAGAA---GCATTTT-CTCAGAACCTCCTTA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188926881 106 + 189454096 TTTTTTTT-------------TAATGTTCAGCTTTTAAAAACCAGTGCTTTGTGATCCTCTG-GCACAT--CACACACGTTTTCGGGTGTCCCCAGAGAA---GCATTTT-CTCAGAACCTCCGTA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178351296 106 + 178775436 tttttttt-------------taatgttcaggTTTAAAAAACCAGTGCTTTGTGATCCTCTG-GCACAT--CACACACGTTTTCGGGTGTTCCCAGagaa---gcatttt-ctcagaacCTCCGTA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135290456 106 + 135778131 TTTTTTTT-------------TAATGTTCAGCTTTTAAAAACCAGTGCTTTGTGATCCTCTG-GCACAT--CACACACGTTTTCGGGTGTCCCCAGAGAA---GCATTTT-CTCAGAACCTCCTTA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190412632  89 - 190850796 CCCTTTGT-------------AAATGCTAA----------------GCTTTGTGATCCTCTGAGAACAT--CACACACACTTTCGGGTGTCCCCAGAGAA---ACGTTTT-CCCAG--CCCCCTTA
i calJac3.chr3             C 0 I 1051
s mm10.chr8                 87539931 114 - 129401213 --TTTTTTA---------AACAAACATTCAGTTTTTAAAACTCAGCACTCTCTATCCCTCTG-GCACACGGCACACACGTTTTCAGGCATCTCTGGAGAAGAGGCATTTGACTTGGCACCTCCTTA
i mm10.chr8                I 105 C 0
s canFam3.chr16             17844710 114 -  59632846 --------GGGACTTTAAAAAAAGTGTTCAGCTTTTAAGAGTCAGAGCTTTGTATTCCTCTG-GCACAT--CATGCAAGTTTTCAGGCATTCCCAGAAAAGAGGCATTTA-TTTGGAGCTGCTTTA
i canFam3.chr16            C 0 C 0

a score=1075001.000000
s hg38.chr4_KI270925v1_alt    152035 380 +    555799 TGCAGATTCGTTTTTACTGAATGCAGCAGAGCAG-GACAGCATTCCTTCTTCTTCCCAATGCATTTTGGCTTCTTTACACAAGAGCCGGGCTGAGTCATGAGCCTCAGAGCCTATGCC---------------CTCTCTTCTCACAGAGCAGC------CTCTTTCTTTGTTCCAAGGTAGATGCACTATGATGATGCTATAGTCTATGAAATTCATCCAGCATCTCCGTG--TCACTGCGCTGCCTTGGAGTCTATGAATCCCAACTCTGGCCTTGTCTCTATCTCAGGTGTGGAAGAAATTAGGAAACAGAAAAGAGGACTGCAACGGCAACTGCCACAGGAGCCTACCGTCAAGTCCCTTCCCAAATTCACAGCCATCTACCAACGAGTCAAAGCCAAAGC
s panTro4.chr4             192847253 380 + 193495092 TGCAGATTCGTTTTTACTGAATGCAACAGAGCAG-GACAGCATTCCTTCTTCTTCCCAATGCATTTTGGCTTCTTTACACAAGAGCCGGGCTGAGTCATGAGCCTCAGAGCATATGCC---------------CTCTCTTCTCACAGAGCAGC------CTCTTTCTTTGTTCCAAGGTAGATGCACTATGATGATGCTATAGTCTATGAAATTCATCCAGCATCTCTGTG--TCACTGTGCTGCCTTGGAGTTTATGAATCCCAACTCTGGCCCTGTCTCTATCTCAGGGGTGGAAGAAATTAGGAAACAGAAAAGAGGACTGCAACGGCAACTGCCACAGGAGCCTACCGTCAAGTCCCTTCCCAAATTCACAGCCATCTACCAACGAGTCAAAGCCAAAGC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197949784 379 + 198332218 TGCAGATTCGTTTTTACTGAATGCAGCAGAGCAG-GACAGCATTCCTTCTTCTTCCCAATGCATTTTGGCTTCTTTACACAAGAGCCGGGCTGAATCATGAGCCTCAGAGCATATGCC---------------CTCTCTTCTCACAAAGCAGC------CTCTTTCTTTGTTCCAAGGTAGATGCACTATGATGACGCTATAGTCTATGAAATTCATCCAGCATCTCTGTA--TCACTGTGCTGCCTTGGAGTTTATGAATCCCAACTCTGGCCCCGTCTCTATCTCAAGGGTGGAAGAAATTAGGAAACAGAAAAGAGAACTGCAATGGCAACTGCCACAGGAGCCTACCGTCAAGT-CCTTCCCAAATTCACAGTCATCTACAAACGAGTCAAAGCCAAAGC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113707106 380 + 115148730 TGCAGATTCGTTTTTACTGAATGCAGCAGAGCAG-GACAGCATTCCTTCTTCTTCCCAATGCATTTTGGCTTCTTTACACAAGAGCCGGGCTGAGTCATGAGCCTCAGAGCATATGCC---------------CTCTCTTCTCACAAAGCAGC------CTCTTTCTTTGTTCCAAGGTAGATGCACTATGATGACGCTATAGTCTATGAAACTCATCCAGCACCTCTGTA--TCACTGCGCTGCCTTGGAGTTTATGAATCCCAGCTCTGGCCCTGTCTCTGTCTCAGGGGTGGAAGAAATTAGGAAACAGAAAAGAGGACTGCAATGGCAACTGCCACAGGAGCCTACCGTCAAGTCCCTTCCCAAATTCACAGTCATCTACAAACGAGTCAAAGCCAAAGC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183543586 379 + 184069350 TGCAGATTTGTTTTCACTGAATGCAGCAGAGCAG-GACAGCACTCCTTCTTCTTCCCAATGCATTTTGGCTTCTTTACACCAGAGCCGGGCTGAGTCCTGAGCCTCCGAGCATAAGCC---------------CCCTCTTCTCACAAAGCAGC------CTCTTTCTTCATTCCAAGGTAGATGCACTGTGATGACACCACAGTCCATGAAATCCATCCAGCGTCTGTGTA--TCACTGCACTGCCTTGGAGTTTATGAATCCCAGCGCTGGCC-TGTCTCTACCTCCGGGGTGGAAGAAATTAGGAAACAGAAAAGAGAACTGCAATGGCAACGACTACAGGAGCCTACCAGCAAGTCCCTTCCCAAAGTCACAGTCATCTACAAACGAGTCAAAGTAAAAGC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188926987 379 + 189454096 TGCAGATTTGTTTCCACTGAATGCAGCAGAGCAG-GACAGCACTCCTTCTTCTTCCCAATGCATTTTGGCTTCTTTACACCAGAGCCGGGCTGAGTCCTGAGCCTCCGAGCATGTGCC---------------CCCTCTTCTCACAAAGCAGC------CTCTGTCTTCGTTCCAAGGTAGATGCACTGTGATGACACCACAGTCTATGAAATCCATCCAGCGTCTGTGTA--TCACTGCACTGCCTTGGAGTTTATGAATCCCAGCGCTGGCC-TGTCTCTACCTCCGGGGTGGAAGAAATTAGGAAACAGAAAAGAGAACTGCAATGGCAACGACTACAGGAGCCTACCAGCAAGTCCCTTCCCAAAGTCACAGTCATCTACAAACGAGTCAAAGTAAAAGC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178351402 379 + 178775436 TGCAGATTTGTTTCCACTGAATGCAGCAGAGCAG-GACAGCACTCCTTCTTCTTCCCAGTGCATTTTGGCTTCTTTACACCAGAGCCGGGCTGAGTCCTGAGCCTCCGAGCATATGCC---------------CCCTCTTCTCACAAAGCAGC------CTCTGTCTTCGTTCCAAGGTAGATGCACTGTGATGACACCACAGTCTATGAAATCCATCCAGCGTCTGTGTA--TCACTGCACTGCCTTGGAGTTGATGAATCCCAGCGCTGGCC-TGTCTCTATCTCCGGGGTGGAAGAaattaggaaacagaaaagagaactgcAATGGCAGCGACTACAGGAGCCTACCGGCAAGTCCCTTCCCAAAGTCACAGTCATCTACAAACGAGTCAAAGTAAAAGC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135290562 379 + 135778131 TGCAGATTTGTTTTCACTGAATGCAGCAGAGCAG-GACAGCACTCCTTCTTCTTTCCAACACATTTTGGCTTCTTTACACAAGAGCCGGCCTGAGTCCTGAGCCTCCGAGCATATGCC---------------CCCTCTTCTCACAAAGCAGC------CTCTTTCTTCGTTCCAAGGTAGATGCACTGTGATGACACCACATTCTATGAAATCCATCCAGCGTCTGTGTA--TCACTGCACTGCCTTGGAGTTTATGAATCCCAACGCTGGTC-TGTCTCTATCTCCGGGGTGGAAGAAATTAGGAAACAGAAAAGAGAACTGCAATGGCAACGACTACAGGAGCCTACCGGCAAGTTCCTTCCCAAAGTCACAGTCATCTACAAACGAGTCAAAGTAAAAGC
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87540045 369 - 129401213 TGCAGACTAATTTTCACTAGAGGCAGCCGAGCGG-AGACGC---CATTCTTTGTGCCAGTACAGGCTGGCTTCTTTACAAAGGAA------TAAGTCAC-AACCACAGAGGACATGCCTCAGAGAGTACATAGCCCTCATCTCACACTGCAGCCACTCTCTCTTCCTTTGTTCCAAGGTAGGTGCACGGTGATGACACTATGGTTTGTGAGGTTCACACCGCTCCTGCCAAGCTCCATACATTGCCTTTGAGATCACAAATCTCAAGTCTGCCACTATCTCTGTGTTAGGTTTGGAAGAAATTAGGACACAGAAACTAAGGGTGGAG------------------------AGCAGCTCTTTTTCTGAATTCACAGGAATATACAAACGAGCCGAGGACCACGC
i mm10.chr8                C 0 I 1347
s canFam3.chr16             17844824 362 -  59632846 TGCAGATTCATTTTTACTGAATGCAGCAGAGCAGAGACACCATCAGTTCTT-TTGCCAACACA--CTGGCTTCGTTACAAAGGAG-----CTGAGTCACAAGCC-CACAGGACGTGCCTCACAGCGCAGAGGCCCCTCTCTTCTCAAGGAGGCCACT--CTCTTCCTCTGCGCCAGGAGGGGTGTACCGACATGACACTAGATTCTATCAACTTCACCCAGCACCT-------T----------CCTTGGAGTTTATAAACCCCAACTCTCCCCCTATCTCTAAATTAGAGTTGG----AATTAGGAAACAGAAAAGGGAACTGAGGTAGCAATCATTATAAGAAACTATCCCCAAGTCCTTTTCCGAATT----------TACAAAAGAACCAAAGCCTGAGC
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190412721 1051 - 190850796 I

a score=26030.000000
s hg38.chr4_KI270925v1_alt    152415 11 +    555799 CATCTTTATTA
s panTro4.chr4             192847633 11 + 193495092 CATCTTTATTA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197950163 11 + 198332218 CATCTTTATTA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113707486 11 + 115148730 CATCTTTATTA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183543965 11 + 184069350 CACCTTTATCA
i rheMac3.chr5             C 0 I 19
s macFas5.chr5             188927366 11 + 189454096 CGCCTTTATCA
i macFas5.chr5             C 0 I 1
s papAnu2.chr5             178351781 11 + 178775436 CGTCTTTATCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135290941 11 + 135778131 CGTCTTTATCA
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17845186 11 -  59632846 AATCACTATTA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87540414 1347 - 129401213 I
e calJac3.chr3             190412721 1051 - 190850796 I

a score=23320.000000
s hg38.chr4_KI270925v1_alt    152426 19 +    555799 GACTTTATGTTGAATAACT
s panTro4.chr4             192847644 19 + 193495092 GACTTTATGTTGAATAACT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197950174 19 + 198332218 GAGTTTATGTTGAATAACT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113707497 19 + 115148730 GAGTTTATGTTGAATAACT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188927378 18 + 189454096 TGAATAACATTGAATAAC-
i macFas5.chr5             I 1 C 0
s papAnu2.chr5             178351792 18 + 178775436 GTGTTTACATTGAATAAC-
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135290952 18 + 135778131 GTGTTTACATTGAATAAC-
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17845197 19 -  59632846 GAGTTTACTTTGCATAACG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87540414 1347 - 129401213 I
e calJac3.chr3             190412721 1051 - 190850796 I
e rheMac3.chr5             183543976 19 + 184069350 I

a score=106257.000000
s hg38.chr4_KI270925v1_alt    152445 42 +    555799 GCTTTGGAAACACCAGGTTCCCAAGGCGGGTCTTAGGGACTG
s panTro4.chr4             192847663 42 + 193495092 GCTTTGGAAACACCAGGTTCCCAAGGCGTGTCTTAGGGACTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197950193 42 + 198332218 ACTTTGGAAACACCAGGTTCCCAAGGCGGGTCTTAGGTACTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113707516 42 + 115148730 ACTTTGGAAACACCAGGTTCCCAAGGCAGGTCTTAGGGACTG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183543995 42 + 184069350 ACTTTGGAAACACCAGATTCCCAAGGTGGGTCTTAGGGACTG
i rheMac3.chr5             I 19 C 0
s macFas5.chr5             188927396 42 + 189454096 ACTTTGGAAACACCAGATTCCCAAGGTGGGTCTTAGGGACTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178351810 42 + 178775436 ACTTTGGAAACGCCAGATTCCCAAGGTGGGTCTTAGGGACTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135290970 42 + 135778131 ACTTTGGAAACACCAGATTCCCAAGGTGGGTCTTAGGGACTG
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17845216 31 -  59632846 ACCTTGGAAACCTTGGGATA-----------CTTTGAGGCTG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87540414 1347 - 129401213 I
e calJac3.chr3             190412721 1051 - 190850796 I

a score=104796.000000
s hg38.chr4_KI270925v1_alt    152487 52 +    555799 ATGTGCGTATCTACTCCTGAGCTTGCTGGGGGAGCTGCAGAAGGAATGGAGG
s panTro4.chr4             192847705 52 + 193495092 ATGTGCGTATCTACTCCTGAGCTTGCTGGGGGAGCTGCAGAAGGAATGGAGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197950235 52 + 198332218 ATGTGCATATCTACTCCTGAGCTTGCTGGGGGAGCTGCAGAAGGAATGGAGG
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183544037 52 + 184069350 ATTTGCATATCTGCTCCTGAGCTTGCTGGGGGAGCTGCAGGAGGAGTGAAGG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188927438 52 + 189454096 ATTTGCATATCTGCTCCTGAGCTTGCTGGGGGAGCTGCAGGAGGAGTGAAGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178351852 52 + 178775436 ATTTGCATATCTGCTCCTGAGCTTGCTGGGGGAGCTGCAGGAGGAGTGAAGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135291012 52 + 135778131 ATTTGCATATCTGCTCCTGAGCTTGCTGGGGGAGCTGCAGGAGGAGTGAAGG
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17845247 38 -  59632846 ATCTACATATCTGTTCTTGAACT--------------CTGAATGAGTGGAGG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87540414 1347 - 129401213 I
e calJac3.chr3             190412721 1051 - 190850796 I
e nomLeu3.chr7b            113707558  0 + 115148730 C

a score=1620319.000000
s hg38.chr4_KI270925v1_alt    152539 691 +    555799  
s panTro4.chr4             192847757 695 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197950287 695 + 198332218  
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183544089 691 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188927490 691 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178351904 691 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135291064 691 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190413772 669 - 190850796  
i calJac3.chr3             I 1051 C 0
s canFam3.chr16             17845285 617 -  59632846  
i canFam3.chr16            C 0 I 162
e mm10.chr8                 87540414 1347 - 129401213 I
e nomLeu3.chr7b            113707558   0 + 115148730 C

a score=665786.000000
s hg38.chr4_KI270925v1_alt    153230 344 +    555799 TTATTTTCTTGATTAGCCTTGTCAGCCTAAAGGGAAGAAACtgaggcaaaattaatataagtggagagatctttggggccaa-cttgaggactgcaacccgggagcacagattcaagttgccctgaatatccactccaaatagcagcagttacaagt-gggtttttaaaggcaatgaacggggacagggagtgggctgatacaaagggctttgtcaggaattctcactggcttacagaaaatacgttgatcagtgattagccacacactgttatgtagggtgtgggttatgtccagcgtggccttattaggttaatttataggcacttgtagtagcagcagtttcc
s panTro4.chr4             192848452 344 + 193495092 CGATTTTCTTGATTAGCCTTGTCAGCCTAAAGGGAAGAAACtgaggcaaaattaatataagtggagagttctttggggccaa-cttgaggattgcaacccgggagcacagattcaagttgcccttaatatccactccaaatagcagcagttacaagt-gggtttttaaaggcaatgaagggggacagggagtgggctgatacaaggggctttgtcaggaattctcactggcttacagaaaatacgttgatcagtgattagccacacactgttacgtagggtgtgggttatgtccagcgtggccttattaggttaatttataggcacttgtagtagcagcagtttcc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197950982 345 + 198332218 TGATTTTCTTGATTAAACTTGTCAGCCTAAAGGGAAGAAACtgaggcaaaattaatataagtggagagttctttggggccaa-cttgaggattgcaacctgggagcacagattcaagttgccctgaatatccgctccaaatagcagcagctccaaatagggtttttaaaggcaatgaaggaggatagggagtgggctgatacaaggggctttgtcaggaattctcactggcttacagaaaatactttgatcagtgattagccacacactgttatgtagggtgtgggttatgtccagcgtggccttattaggttaatttataggcacttgtagtagcagcagtttcc
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183544780 328 + 184069350 TGATTTTATTGACTAGCCTTGTCAGCCTAAAGGGAAG-----------aaattaatataagtggagagttttttggggccaa-cttgaggattacaaccc-ggagcacagattcaagttgccctgaacgtccac-ccaaacagcagcagttacaagt-gggtttctgaaggcaacgaagggggacagggagt-ggctgatacaagcggctttgtcaggaatgctgac-ggcttacagaaaatacgtttattagtgattagccacacactgttatgtagggtgtgggttatgtgcagtgtgg-cttcttaggttactttataggcattcgtagtagcagcattttcc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188928181 329 + 189454096 TGATTTTATTGACTAGCCTTGTCAGCCTAAAGGGAAG-----------aaattaatataagtggagagttttttggggccaa-cttgaggattacaaccc-ggagcacagattcaagttgccctgaacgtccac-ccaaacagcagcagttacaagt-gggtttctgaaggcaacgaagggggacagggagt-ggctgatacaagcggctttgtcaggaatgctcactggcttacagaaaatacgtttattagtgattagccacacactgttatgtagggtgtgggttatgtgcagtgtgg-cttcttaggttactttataggcattcgtagtagcagcattttcc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178352595 330 + 178775436 TGATTTTATTGACTAGCCTTGTCAGCCTAAAGGGAAG-----------AAATTAATATAAGTGGAGAGTTTTTTGGGGCCAA-CTTGAGGATTACAACCC-GGAGCacagattcaagttgccctgaacATCCAC-CCAAACAGCAGCAGTTACAAGT-GGGTTTCTGAAGGCAACGAAGGGGGACAGGGAGTGGGCTGATACAAGCGGCTTTGTCAGGAAAGCTCACTGGCttacagaaaatacatttattagtgATTAGCCACACACTGTTATGTAGGGTGTGGGTTATGTGCAGTATGG-CTTCTTAGGTTACTTTATAGGCATTCGTAGTAGCAGCATTTTCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135291755 329 + 135778131 TGATTTTCTTGACTAGCCTTGTCAGCCTAAAGGGAAG-----------aaattaatataagtggagagttttttggggccaa-cttgaggattacaaccc-ggagcacagattcaagttgccctgaacatccac-ccaaacagcagcagttacaagt-gggtttctgaaggcaacgaagggggacagggagc-ggctgatataaggggctttgtcaggaatgctcactggcttacagaaaatacgtttattagtgattagccacacactgttatgtagggtgtgggttgtgtgcagtgtga-cttcttaggttaatttataggcattcgtagtagcagcagtttcc
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190414441 297 - 190850796 TTATTTTCGTGATTAGTCTtgtcagcctgaaaggaagaacctgaggcaaaattaatgtaagtggagagttttttggggccaagtttga-------------ggggcatagattcaagttgccctgactatgccctccaactagcagcagttgcaatg-gggttttcaa-------------------------ggctgatacaaa-ggctctgtgaggaattc---------tacaaaagttacgttgactagtgatgagccacacactgttacatagagtgcggctcacgcccagtgaggccttactaggctaatctataggcacttgtcctagcagcagtttcc
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87540414 1347 - 129401213 I
e canFam3.chr16             17845902 162 -  59632846 I
e nomLeu3.chr7b            113707558   0 + 115148730 C

a score=1672385.000000
s hg38.chr4_KI270925v1_alt    153574 710 +    555799  
s panTro4.chr4             192848796 710 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197951327 710 + 198332218  
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183545108 709 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188928510 709 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178352925 709 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135292084 709 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190414738 693 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17846064 621 -  59632846  
i canFam3.chr16            I 162 C 0
e mm10.chr8                 87540414 1347 - 129401213 I
e nomLeu3.chr7b            113707558   0 + 115148730 C

a score=927319.000000
s hg38.chr4_KI270925v1_alt    154284 398 +    555799 AATATTTGCTGAACGAATGAAGAAATGGGTGAGTGAATGGGTTCATTTCCTTCCAATCCCACA-GCTTTAGATAGAGTCTGTGCCCCCTGAGTCCCATCTCACTTCCATTCCTTCTTTTCATACACTGCTATCTTCTCATCA-CCTC-TCAGGCAATGTGAAACCCAACCTCTGTCC-TTCACAACTCTCTT-----TTTCT---CACATCCTCACCTC-ACTGGGAGAGGAGAGCCACATGTCAACCTAGAGTTACCCCTTGAATTATTTGAAGACACACAGAATTGCTTGCAGACA--TTTGCATTAGATAAAAATGTTATTTTGCAGTTTGTTCCCCCAAAGCTGCTAGTTCTCCTTCCCTGCCATGGGAATACATCCACTGGA--------------------------------------------AGCTGCTAGTTCTCCTTCCCCGCCAT
s panTro4.chr4             192849506 398 + 193495092 AATATTTGCTGAATGAATGAAGAAATGGGTGAGTGAATGGGTTCATTTCCTTCCAATCCCACA-GCTTTAGATAGAGTCTGTGCCCCCTGAGTCACATCTCGCTTCCATTCCTTCTTTTCATACACTGCTATCTTCTCATCA-CCTC-TCAGGCAATGTGAAACCCAACCTCTGTCC-TTCACAACTCTCTT-----TTTCT---CACATTCTCACCTC-ACTGGGAGAGGAGAGCCACATGTCAACATAGAGTTACCCCTTGAATTATTTGAAGACACACAGAATTGCTTGCAGACA--TTTGCATTAGATAAAAATGTTATTTTGCAATTTGTTCCCCCAAAGCTGCTAGTTCTCCTTCCCTGCCATGGGAATACATCCACTGGA--------------------------------------------AGCTGCTAGTTCTCCTTCCCCGCCAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197952037 398 + 198332218 AATATTTGCTGAATGAATGAAGAAATGGGTGAGTGAATGGGTTCATTTCCTTACAATCCAACA-GCTTTAGATAGAGTCTGTGCCCCCTGAGTCCCATCTCGCTTCCATTCCTTCTTTTCATATACTGCTATCTTCCCATCA-CCTC-TCAGGCAATGTGAAACCCAACCTCTGTCC-TTCACAACTCTCTT-----TTTCT---CACATCCTCACCTC-ACTGGGAGAGGAGAGCCACATGTCAACATAGAGTTACCCCTTGAATTATTTGAAGACACACAGAATTGCTTGCAGACA--TTTTCATTAGATAAAAATGTTATTTTGCAATTTGTTTCCCCAAAGCTGCTAGTTCTCCTTCCCTGCCATGGGAATACATCCACTGGA--------------------------------------------AGCTGCTAGTTCTCCTTCCCCATCAT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183545817 397 + 184069350 AATATCTGCtgaatgaatgaataaatgactgagtgaatgGGTTCATTTCCTTCCAACCCAACA-GCTTTAGATACAGTCTGTGCCCCCTGAGTCCCGTCGCTCTTCCATTCCTCCTTTTCATATACTGCTGTCTTCTCATCA-CCCC-TCAGGCAATGTGAAACCCAACCTCTCTCC-TTTACTACTCTCTT-----TTTCT---CACAGTCCCACCTC-ACGGGGAGAGGAGAGCCACATGTCAACGTAGAG-TACCCCTTGAATTATTTGAAGACACACAGAATTGCTTGCAGACA--TTTGCATTAGATAAAAATGTTATCTTGCAATTTGTTCACCCAAAGCTGCTAGTTCTCCTTCTCCGCCATGGAAATTCATACCCTGGA--------------------------------------------AGCTGCTACTTCTCCTTCCCCACCAT
i rheMac3.chr5             C 0 I 220
s macFas5.chr5             188929219 397 + 189454096 AATATCTGCtgaatgaatgaagaaatgactgagtgaatgGGTTCATTTCCTTCCAACCCAACA-GCTTTAGATACAGTCTGTGCCCCCTGAGTCCCATCGCTCTTCCATTCCTCCTTTTCATATACTGCTGTCTTCTCATCA-CCCC-TCAGGCAATGTGAAACCCAACCTCTCTCC-TTTACTACTCTCTT-----TTTCT---CACAGTCCCACCTC-ACGGGGAGAGGAGAGCCACATGTCAACGTAGAG-TACCCCTTGAATTATTTGAAGACACACAGAATTGCTTGCAGACA--TTTGCATTAGATAAAAATGTTATCTTGCAATTTGTTCACCCAAAGCTGCTAGTTCTCCTTCCCCGCCATGGAAATTCATACCCTGGA--------------------------------------------AGCTGCTACTTCTCCTTCCCCACCAT
i macFas5.chr5             C 0 I 176
s papAnu2.chr5             178353634 441 + 178775436 aatatctgctgaatgaatgaagaaatgactgAGTGAATGGGTTCATTTCCTTCCAACCCAACA-GCTTTAGGTACAGTCTGTGCCCCCTGAGTCCCATCACTCTTCCATTCCTCCTTTTCATATACTGCTGTCTTCTCATCA-CCCC-TCAGGCAAAGTGAAACCCAACCTCTCTCC-TTTACTACTCTCTT-----TTTCT---CACATCCCCACCTC-ACTGGGAGAGGAGAGCCACATGTCAACGTAGAG-TACCCCTTCAATTATTTGAAGACACACAGAATTGCTTGCAGACA--TTTGCATTAGATAAAAATGTTATCTTGCAATTTGTTCACCCAAAGCTGCTAGTTCTCCTTCCCCGCCATGGAAATTCATACCCTGGAAGCTGCTACTTCTCCTTCCCCACCATGGGAATGCATCCATTGGGAGCTGCTAGTTCTCCCTCCCCGCCAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135292793 399 + 135778131 AATATCTGCtgaatgaatgaagaaatgactgagtgaatgGGTTCATTTCCTTCCAACCCAACA-GCTTTAGATACAGTCTGTGCCCCCTGAGTCCCATCGCTCTTCCATTCCTCCATTTCATATACTGCTGTCTTCTCATCA-CTCC-TCAGGCAATGTGAAACCCAACCTCCCTCC-TTCACTACTCTCTT-----TTTCT---CACATCCCCACCTC-ACCGGGAGAGGAGAGCCACATGTCAACGTAGAA-TACCCCTTGAATTATTTGAAGACACACAGAATTGCTTGCAGACATTTTTGCATTAGATAAAAATGTTATTTTGCAATTTGTTCACCCAAAGCTGCTAGTTCTCCTTCCCCGCCATGGGAATGCATCCATTGGG--------------------------------------------AGCTGCCAGTTCGCCCTCCCGGCCAT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190415431 338 - 190850796 AATATTTGCTGAATGAATAAAGAAGTGAG-GAGTGAAT-GGTTTGCTTCCTTCCAATCTGACA-GCTTTTGA---------------------CCCATCTCCCTTCCAGTCCTTCTGTTCATACACTGCTCTCTTCTCATCA-CCAC-TCGGGCAAGGTGGACCCGAACCTCTCTCC-TTTACAACTCTCTT-----TTTCT---CACATCCTGACCTC-ACTGGGAGAGGAGAGCCATGTGTCAACACAGAGTTACCCCTTGAATTACTTGAAGACACACAGAGTTCCTTGCAGACA--TTTGCGTTTGGTAAAAATGTTAGTTTGCAATTTGTTCACCCAAAGCTGCTAGTTGT-CGTCCTCACCGTGGGAATGC--------------------------------------------------------------------------------
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87541761 301 - 129401213 AATCCTTGGTGAAAGAATGAAGAAAGGGGGGAGTGAATGAAAGCATTGTTT--------------------------------CCTCCTAAATTTCAGCTATCTTCTATCCCCTCCACCCATCTATCTCAATCCTCTCATCAGCACC-TTAGCTGGGGTATAATTCACACTATCTCTGCCTACAACCACTTC-----TTTCT----------TCATCTAGACTAGTAGAAGAGAGTCCCCTACCAGC----------------------TGGAAGACACGCAGAATTTCTGGCTGGCT--TTGGCATTTTATACCAGAGCTACTTTGGAATTTGCTCATTCACAGCTATTAG-TCTCCTCCCTCACCATGGCAA-----------------------------------------------------------------------------------
i mm10.chr8                I 1347 C 0
s canFam3.chr16             17846685 380 -  59632846 AATATTTGCTGAAGGAATCAAGGAATGAAAGGGGGCATAAAGTCATCTCTTCCCAATCCCACCTACTGTAGATGGAGTCTGTGGATCCTGTGTCCTGTC--TCCTCCTCCCCCTCTTCTCAGTAACTACTGTCTTTTCCCGA-CCACTTTTGGTGGCATGAAAGCCAACTCCTTTCT-CTCCCTATTAACTTATATCTTTCCACACACGTTCAGACCTC-ACTGGAGGAGGAGA-CCACTTGCCAGTGTAGAGTTACCCTTTGAAAGATATGGAGACATGCAGGATTCCTTGCTGACT--CTTGCACTTGATAAAAACTCtttttttttttttttttttttttttttGCAATTTGCTCACCCCC-------------------------------------------------------------------AGCTGCTGGTCTG--TTTCTAGCCTT
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113707558   0 + 115148730 C

a score=8964.000000
s hg38.chr4_KI270925v1_alt    154682 4 +    555799 AGGA
s panTro4.chr4             192849904 4 + 193495092 AGGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197952435 4 + 198332218 AGGA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183546434 4 + 184069350 GGGA
i rheMac3.chr5             I 220 C 0
s macFas5.chr5             188929792 4 + 189454096 GGGA
i macFas5.chr5             I 176 C 0
s papAnu2.chr5             178354075 4 + 178775436 GGGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135293192 4 + 135778131 GGGA
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87542062 1 - 129401213 ---A
i mm10.chr8                C 0 C 0
s canFam3.chr16             17847065 4 -  59632846 GGGA
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190415769 0 - 190850796 C
e nomLeu3.chr7b            113707558 0 + 115148730 C

a score=976374.000000
s hg38.chr4_KI270925v1_alt    154686 280 +    555799 --ATGT-ATccattggaatggaagctccatgggagcaggacacgtgtattctctattttacttctgtGCAC-TAATATGTTACCTAGCCCTGTGACCTCAGCAGCAGTGCCAAATCTGTCA-TTCTGTGCCTGC-TGACAAAGGTGCTTACAGCCTCTGACAATCTCCTAACACCTC-TCTGAGGGAAAGAGGAACAGACTTAATACTAGTAGCTGCTTTTATTGGTGAATAAAATTGAGGACTGCTAGTGGATTTTATAAGTAC-CAAATTTCCCTAGAAAAGCATT
s panTro4.chr4             192849908 280 + 193495092 --ATGT-ATccattggaatggaagctccatgggagcaggacacgtgtattctctattttacttctgtGCAC-TAATATGTTACCTAGCCCTGTGACCTCAGCAGCAGTGCCAAATCTGCCA-TTCTGTGCCTGC-TGACAAAGGTGCTTACAGCCTCTGATAATCTCCTAACACCTC-TCTGAGGGAAAGAGGAACAGACTTAATACTAGTAGCTGCTTTTATTGGTGAATAAAATTGAGGACTGCTAGTGGATTTTATAAGTAC-CAAATTTCCCTAGAAAAGCATT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197952439 280 + 198332218 --ATGC-ATccattggaatggaagctccatggcagcaggacgtgtgtattctctattttacttctgtGCAC-TAATATGTTACCTAGCCCTGCGACCTCAGCAGCAGTGCCAAATCTGCCG-TTCTGTGCCTGC-TGACAAAGGTGCTTACAGCCTCTGACAATCTCCTAACACCTC-TTTGAGGGAAAGAGGAACAGACTTAATACTAGTAGCTGCTTTTATTGGTGAATAAAATTGAGGACTGCTAGTGGATTTTATAAGTAC-CAAATTTCCCTAGAAAAGCATT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113707558 280 + 115148730 --ATGC-ATccactggaatgcaagctccataggagcaggatgtgtgtattctctattttactcctgtgcac-taacatgttacctagcCCTGCGACCTCAGCAGCAGTGCCAAATCTGTCA-TTCTGTGCCTGC-TGACAAAGGTGCTTACAGCATCTGACAATCTCCTAACACCTC-TCTGAGGGAAAGGGGAACAGACTTAATACTAGTAGCTGCTTTTATTGGTGAATAAAATTGAGGACTGCTAGTGGATTTTATAAGTAC-TAAATTTCCCTAGAAAAGCATT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183546438 280 + 184069350 --ATGC-ATCCATTGGGATGGAAGCTCCATGGGGGCAGGACGTGTGTATTCTCTATTTTACTTCTGTGCAC-TTACATGTTACCCAGTCCTGCAACCTCAGCAGCAGTGCCAAATCTGCCA-TTCCATGCCTGC-TGGCAAAGGCGCTTACAGCCTCCGGCAATCTCCTAACACTTC-TCTGAGGGAAAGAGGAACAGACTTAATACTAGTAGCTGCTTTTATTGGTGAGTAAAATTGAGGACTGCTAGTGGATTTTATAAGTAC-CAAATTTCCCTAGAAAAGCATT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188929796 280 + 189454096 --ATGC-ATCCATTGGGATGGAAGCTCCATGGGGGCAGGACGTGTGTATTCTCTATTTTACTTCTGTGCAC-TTACATGTTACCCAGTCCTGCAACCTCAGCAGCAGTGCCAAATCTGCCA-TTCCATGCCTGC-TGGCAAAGGCGCTTACAGCCTCCGGCAATCTCCTAACACTTC-TCTGAGGGAAAGAGGAACAGACTTAATACTAGTAGCTGCTTTTATTGGTGAGTAAAATTGAGGACTGCTAGTGGATTTTATAAGTAC-CAAATTTCCCTAGAAAAGCATT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178354079 280 + 178775436 --ATGC-ATCCACTGGGATGGAAGCTCCATGGGGGCAGGACGTGTGTATTCTCTATTTTACTTCTGTGCAC-TTACATGTTACCGAGTCCCGCAACCTCAGCAGCAGTGCCAAATCTGCCA-TTCCATACCTGC-TGGCAAAGGCGCTTACAGCCTCCGGCAATCTCCTAACACTTC-TCTGAGGGAAAGAGGAACAGACTTAATACTAGTAGCTGCTTTTATTGGTGAGTAAAATTGAGGACTGCTAGTGGATTTTATAAGTAC-CAAATTTCCCTAGAAAAGCATT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135293196 281 + 135778131 --ATGctttccattggaatggaagctccatgggggcaggacatgtgtattctctattttacttctgtGCAC-TTACATGTTACTGAGTCCTGCGACCTCAGCAGCAGTGCCAAATCTGCCA-TTCCATGGCTGC-TGTCAAAGGCGCTTACAGTCTCCGGCAATCTCCTAACACTTC-TCTGAGGGAAAGAGGAATAGACTTACTACTAATAGCTGCTTTTATTGGTGAGTAAAATTGAGGACTGCTAGTGGATTTTGTAAGTAC-CAAATTTCCCTAGAAAAGCATT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190415769 274 - 190850796 ------TACCCACTGGAATGGAAGCGCCATGGGCGCAGGACGTGTG--TTCTTCATTTTGCTTTTGTACGT-GAATATAGTACCTAATCCTGCAACCTCAGCAGCAGTGCCAAGGCTGCCGTTTCTGTGCCTGC-TGGCAAAGGTGTCTCCGACCT-GGGCGATCTCCTCACACCTC-TCTGAGGGAAAGAGGAACAGGCTTCATCCTAGCAGCTGCTTTCATCGGTAAATAAAATGAAGGACTGCAAGTGGACTTGATAAGTAC--ACATTTCCCTAGAAAAACACT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87542063 278 - 129401213 --ACTT-ATCTTTTGGAATAGCAACACCGTGGAAGGAAGGTATGTAT-CCCTGGGCTTCAGCCCTGTG-AG-GGACCTGCTTTCGGTTGCTCTGGTACCAGCAAGA-TGCCAAGTGTGCCC-TTCTGTGCCTGC-CGACAGGGGTTC-TGCTGCCTCCAGCAATCTCCAAACAGTTCTTCCAAGGCAAATCACAATACACCGTACACCTATTGTTGCTTTTATTGATAAATCCACTTGAAAGCTGCGGGTGGGTTTTAGGAGTACCCAGATTTCTTTAGAAAGGTATC
i mm10.chr8                C 0 I 1
s canFam3.chr16             17847069 279 -  59632846 ATAGTT-ATCTATTGGAATGGAAATGCCATGAGAGCAGGCTGTGCCTCTTCTTTATTCCAGTTATGTATACAGTATATGTTACCTTGCTCTGCAAACCCAGAAG---TGCCAA-TCTGCCC-TTCGGTCCCTGCTTTACAGGCATGCTTATAGCTTCCAGCAATTTCCTAACATCTC-TCTAAGGGGAAGAGCAACAAATGTT-TACTAGTAGCTGTTTTCATTGATAAATAAAATTGAGGATTGCTGGTGCCTTTTGTGAGTAC-CAAACTTGCCTAGAAAAGCATT
i canFam3.chr16            C 0 I 113

a score=2905818.000000
s hg38.chr4_KI270925v1_alt    154966 794 +    555799  
s panTro4.chr4             192850188 793 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197952719 786 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113707838 790 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183546718 799 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188930076 800 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178354359 798 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135293477 800 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190416043 764 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87542342 797 - 129401213  
i mm10.chr8                I 1 I 124
s canFam3.chr16             17847461 904 -  59632846  
i canFam3.chr16            I 113 C 0

a score=585365.000000
s hg38.chr4_KI270925v1_alt    155760 195 +    555799 -CACCTGAGTTAGAAGGCTTGGGTTCTACGTTCAGCTGGGACAATAGATAAATAGAATTGCTATTAA------TAAAACTCAAGGCATGATTT------CAACaatgacaatccacactcactgagtgctttatacgtgtcatgtactatgctaG------tgttgaaagaaaagctttaaaaaattaaatttaaaagttcatttgagcaaagg
s panTro4.chr4             192850981 195 + 193495092 -CACCTGAGTTAGAAGGCTTGGGTTCTACGTTCAGCTGGGACAATAGATAAATATAATTGCTATTAA------TAAAACTCAAGGCATGATTT------CAACaatgacaatccacactcactgagtgctttatacgtgtcatgtactatgctaG------tgttgaaagaaaagctttaaaaaattaaatgtaaaagttcatttgagcaaagg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197953505 201 + 198332218 -CACCTGAGTTAGAAGGCTTGCGTTCTATGTTCAGCTGGGACAATAGATAAATATAATTGCTATTAATAATATTAAAACTCAAGGCATGATTT------CAACAATGACAATCCACACTCACTGAGTGCTTTATACATGTCATGTACTATGCTAG------tgttgaaagaaaagctttaaaaaattaaatttaaaagtttatttgagcaaagg
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113708628 201 + 115148730 -CACCTGAGTTAGAAGGCTTGGGTTCTATGTTCAGCTGGGACAATAGATAAATATAATTGCTATTAATAATATTAAAACTCAAGGCATGATTT------CAACAATGACAATCCACACTCACTGAGTGCTTTATACATGTCATGTACTATGCTAG------tgttgaaagaaaagctttaaaaaactaaatttgaaagtttatttgagcaaagc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183547517 199 + 184069350 -CACCTGAGTTAGAAGGTGTGGG-TCTGTGTTCAGCTGGGACATTAGACAAATATAATTGCTATTAATAATATTAAAACTCAAGGCACGATTT------CGGCAATGACAATCCACACTCACTGAGTGCTTTATACATGTCAGGTACTATACTAG------tgttgaaagaaaagcttt-aacaattaaatttaaaagtttatttgagcaaagg
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188930876 199 + 189454096 -CACCTGAGTTAGAAGGTGTGGG-TCTGTGTTCAGCTGGGACATTAGACAAATATAATTGCTATTAATAATATTAAAACTCAAGGCACGATTT------CGGCAATGACAATCCACACTCACTGAGTGCTTTATACATGTCAGGTACTATACTAG------tgttgaaagaaaagcttt-aacaattaaatttaaaagtttatttgagcaaagg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178355157 198 + 178775436 -CACCTGAGTTAGAAGGTGTGGG-TCTGTGTTCAGCTGGGACATTAGACAAATATAATtgctattaataatattaaaactcAAGGCAC-ATTT------CGGCAATGACAATCCACACTCACTGAGTGCTTTATACATGTCAGGTACTATACTAG------CATTGAAAGAAAAGCTTt-aacaattaaatttaaaagtttatttgagcaaagg
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135294277 199 + 135778131 -CACCTAAGTTAGAAGGTGTGGG-TCGGTGTTCAGCTGGGACATTAGACGAATATAATTGCTATTAATAATATTAAAACTCAAGGCACGATTT------CGGCAATGACAATCCACACTCACTGAGTGCTTTATACATGTCAGGTACTATACTAG------tgttgaaagaaaagcttt-aacaattaaatttaaaagtttatttgagcaaagg
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190416807 192 - 190850796 -TGCCTGAGTTAGAAGGCTTGGGTTTTACCTTTGGCTGGGCCTGTAGATAAATATAATTGCTCTTAATAA---TGAAACTCAAGGCACGATTT------CAGCAATGACAATACGCATTTACTGAGTGCTTTATACATGTCACGTACTATACTAG------tgttgaaagaaaagctttaaaaaatta------aaagtttatttgagtaaaga
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17848365 206 -  59632846 GACCAGGAGCTGAGAGACCTAGATGCTGCTTCCATCTGGGCCAA-GGATAGatat------tattaataaaattaaaaCTCAAGATACAGTTTTTACAACCATaataaaaacccatattcattgagtgcttcacatgtatcgagtactatactaggtattttattaaaatataaccttaaatcttcccaataTGTGTCTTTCTTT-AGCAAATG
i canFam3.chr16            C 0 I 770
e mm10.chr8                 87543139 124 - 129401213 I

a score=1221387.000000
s hg38.chr4_KI270925v1_alt    155955 429 +    555799 gtaattcatgaaccaggtagcactctaaaccaaaaggggctcagagcactctgctctgcaggtgatgggacgtgagtttttatagg--------------cagaacacagaagtacagaaatggcggctggattggcttcagctgggccttatttgcacatggtctgatcacttggctgcctgtgatgggctgagacctggctatctattacaaaattatatactcccatggtgggttccagtgtgttcacatactaaggtgggttatatgtccttacttaggaactcaaagtatggagacagactcaggccaaACTTAATTGAACGCTAGGTATTTTATAAGCATGAACTAACATATTTCTAATATCCCTTTGTA-------CT-TTGTTTTTTAACAa-------acctgaggcttaaagagggtgattttcccacagtcattttgctaAGTATGA
s panTro4.chr4             192851176 429 + 193495092 gtaattcatgaaccaggtagcactctaaaccaaaaggggctcagagcactctgctctgcaggtgatgggacgtgagtttttatagg--------------cagaacacagaagtacagaaatggcggctggattggcttcagttgggccttatttgcacatggtctgatcacttggctgcctgtgatgggctgagacctggctatctattacaaaattatatactgccatggtggattccagtgtgttcacatactaaggtggattatatttccttacttaggaactcaaagtatggagacagactcaggccaaACTTAATTGAACACTAGGTATTTTATAAGCATGAATTAACATATTTCCAATATCCCTTTGTA-------TT-TTGTTTTTTAACAa-------acctgaggcttaaagagggtgattttcccacagtcattttgctaAGTATGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197953706 429 + 198332218 gtaattcatgaaccaggtagcactctaaaccaaaaggggctcagagcactctgctctgcaggtgatgggacgtgagtttttatagg--------------cagaacacagaagtatagaaatggcagctggattggcttcagctaggccttatttgcacatggtctgatcacttggctgcctgtgatgggctgagacctggctatctattacaaaattatatactcccacggtgggttccagtgtgttcacatactaaggtggattatatttccttacttaggaactcaaagtatggagacagactcaggccaaACTTAATTGAACACTAGGTATTTTATAAGCATGAACTAACATATTTCCAACATCCCTTTGTA-------TT-TTGTTTTTTAACAa-------acctgaggcttaaagagggtgattttcccacagtcattttgctaAGTGTGA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113708829 426 + 115148730 ataattcatgaaccaggtagcactctaaaccaaaaggggctgagagcactctgctctgcaggtgatgggatgtgagtttttatagg--------------cagaacacagaagtacatgaatggcagatggattggcttcagctgggccttatttgcacatggtctgatcacctggctgcctgtgatgggctgagacctggctatctattacaaaattatatactcccatggtggattccagtgtgttcacatactaaggtggattatatttccttacttaggaactcaaagtatggagacagactcaggccaaACTTAATTGAACACTAGATATTTTATAAGCATGAACTAACATATTTCCAATAGCCCTTTGTA-------TT----TTTTTTAACAa-------acctgaggcttaaagagggtgattttcccacagtcattttgctaAGTATGA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183547716 426 + 184069350 gtaattcatgaagcaggtagcactctaaagcaaaaagggcacagagcactctgctctgcctgtgatgggacatgagcttttacagg--------------cagaacacagacggacagaagtggcagctgcgttggtttcagctgggccttatttgcacatggtctgatcgcctggctgcctgggatagactgagacctggttatctattacaaaactgtatactcccacggtgggttccagtgtgttcacatactaaggtgggttatatgttcttacttgggaactcgaagtatggagacagcctcaggccaaacttaattgaacaCAAGGTATTCTAGAAGCATGAACTAACATATTTCCAATAGCTCTTTGTA-------TT----TTTTTTAACAA-------ACCTGAGGCTTAAAAAGGGTGATTTTCCCACAGTCATTTTGGTAAGTATGA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188931075 426 + 189454096 gtaattcatgaagcaggtagcactctaaaccaaaaagggcacagagcactctgctctgcctgtgatgggacatgagcttttacagg--------------cagaacacagacggacagaagtggcagctgcgttggtttcagctgggccttatttgcacatggtctgatcgcccggctgcctgtgatagactgagacctggttatctattacaaaattgtatactcccacagtgggttccagtgtgttcacatactaaggtgggttatatgttcttacttgggaactcgaagtatggagacagcctcaggccaaACTTAATTGAACACAAGGTATTCTAGAAGCATGAACTAACATATTTCCAATAGCTCTTTGTA-------TT----TTTTTTAACAA-------ACCTGAGGCTTAAAAAGGGTGATTTTCCCACAGTCATTTTGGTAAGTATGA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178355355 426 + 178775436 gTAATTCATGAAGCAGGTAGCACTCTAAACCAAAAAGGGCTCGGAGCACTCTGCTCTGCCTGTGATGGGACATGAGCTTTTATAGG--------------CAGAACACAGAAGGACGGAAGTGGCGGCCGGGCTGGTTTCCGCTGGGCCTTGTTTGCACATAGTCTGGTCGCCCGGCTGCctgtgacagactgagacctggTTATCTATTACAAAATTGTATACTCCCACGGTGGGTTCCAGTGTGTTCACATACTAAGGTGGGTTATATGTTCTTACTTGGGAACTCGAAGTATGGAGACAGCCTCAGGCCAAACTTAATTGAACACAAGGTATTCTAGAAGCATGAACTAACATATTTCCAATagctctttgta-------tt----ttttttaacaa-------acctGAGGCTTAAAAAGGGTGATTTTCCCACAGTCATTTTGGTAAGTATGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135294476 447 + 135778131 gtaattcatgaagcaggtagcactctaaaccaaaaagggctcagaacactctgctccgcaggtgatgggacatgagcttttataggcagaacacagaacacagaacacagaaggacggaagtggcagctgggttggtttcagctgggccttatttgcacatggtctgatcgcctggctgcctgtgatagactgagacctggctatctattacaaaatcgtatactcccacggtgggtttcagtgtgttcacatactaaggtgggttatatgttcttacttgggaactcgaagtatggagacagcctcaggccaaACTTAATTGAACACAAGGTATTTTATAAGCATGAACTAACATATTTCCAATAGCTCTTTGTATTTTTTTTT----TTTTTTAACAA-------ACCTGAGGCTTAAAAAGGGTGATTTTCCCACAGTCATTTTGGTAAGTATGA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190416999 433 - 190850796 gtaatgcatggaccaggtagcgctctaaaccaaaagaggctcggagcgctctgctctgcaggtgatgggacgtgagctcttatagg--------------aagaacacagaagtacagaaatggcagcagc-taggcttcagaggggccttatctgcacattgtgtgatcagctggctgcctgtgatcagctgagacctggctgactattaaaaaaatatatactcccaaagtgggtttca--gtgttcacatactaagttagattgcatttccttacttaggaactcaga-tatggagacagcctcaggccaCACTTAATTGAACACAAGGTATTTTATAAGCATGAACTAACATATTCTCAATAGCCCTATGTA-------TTTTTTTTTTTTAACAAATGGGCTACCTGAGGCTTAAAGAGGATGATTTTCCCACAGTCATTTTGCTAAGTATGA
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87543139 124 - 129401213 I
e canFam3.chr16             17848571 770 -  59632846 I

a score=383193.000000
s hg38.chr4_KI270925v1_alt    156384 144 +    555799 TACTTTGACGAACCAATTAGACTTTTCTGGACTTTAGTTATTTGTTGCTGTTTATTTTTAATCTGAAAAATGAAGGGATGGAATAGGAGCATGTTACAATTATTTTTAACGCCATGATTATTTGATTGGAC-AATTCTCTTAGCC
s panTro4.chr4             192851605 144 + 193495092 TACTTTGACGAACCAATTAGACTTTTCTGGACTTTAGTTATTTGTTGCTGTTTATTTTTAATCTGAAAAATGAAGGGATGGAATAGGAGCATGTTACAATTATTTTTAACGCCATGATTATTTGATTGGAC-AATTCTCTTAGCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197954135 143 + 198332218 TACTTTGACG-ACCAATTAGACTTTTCTGGACTTTAGTTATTTGTTGCTGTTTATTTTTAATCTGAAAAATGAAGAGATGGAATAGGAGCATGTTACAATTATTTTTAACGCCACAATTATTTGATTGGAC-AATTCTCTTAGCC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113709255 144 + 115148730 TACTTTGACGAACCAATTAGACTTTTCTGGACTTTAGTCATTTGTTGTTGTTTACTTTTAATCTGAAAAATGAAGGGATGGAATAGGAGCGTGCTACAATTATTTTTAACACCACGATTATTTGATTGGAC-AATTCTCTTAGCC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183548142 135 + 184069350 TACTTTGATGAACCAATTAGACTTTTCTGGACTTCAGTTA----------TTTGTTTTTAATCTGAAAAATGAAGGGATGGAATAGGAGCATGCTACAATTCTTTATAACGCCACGATTATTTGATTGGACAAATTCTCTTAGCC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188931501 135 + 189454096 TACTTTGATGAACCAATTAGACTTTTCTGGACTTCAGTTA----------TTTGTTTTTAATCTGAAAAATGAAGGGATGGAATAGGAGCATGCTACAATTCTTTATAACGCCACGATTATTTGATTGGACAAATTCTCTTAGCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178355781 135 + 178775436 TACTTTGATGAACCAATTAGACTTTTCTGGACttcagtta----------tttgtttttaatctgaaaaatgaagggatggaatAGGAGCATGCTACAATTCTTTATAACGCCACGATTATTTGATTGGACAAATTCTCTTAGCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135294923 145 + 135778131 TACTTTGATGAGCCAATTAGACTTTTCTGGATTTCAGTTATTTGTTGTTGTTTGTTTTCAATCTGAAAAATGAAGGGATGGAATAGGAGCATACTACAATTCTTTATAACGCCACGATTATTTGATTGGACAAATTCTCTTAGCC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190417432 137 - 190850796 TACTTTGACCAACCAATTAGACTATTCTGGAATTTAGTTATTTGTTG---TTTG-TTTTAATTTGAAAAATGAAGGGGTGGAATAGGTGCACACTACCATTC----TAACGCCACAATTACTCGATTGGACAAATTCTCTTAGCT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87543263 119 - 129401213 TATTTTAACCAATCAATT-GATCTCTCTGAGTTCTCCTTG---------GTCCAGGTCTAGTCTAAAATAC-------TGGAACA-GAGCACCAAAGACTCTTGAACAGCACC-------TCTGATTTGAC-AGGCCTTGATGCT
i mm10.chr8                I 124 C 0
e canFam3.chr16             17848571 770 -  59632846 I

a score=85163.000000
s hg38.chr4_KI270925v1_alt    156528 21 +    555799 ATGCAAGATGTGTTGTCTCTC
s panTro4.chr4             192851749 21 + 193495092 ATGCAAGATGTGTTGTCTCTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197954278 21 + 198332218 ATGCAAGATGTTTTGTCTCTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113709399 21 + 115148730 ATGCAAGATGTGTTGTCTCTC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183548277 21 + 184069350 ATGCAAGATGTGTTGTCTCTC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188931636 21 + 189454096 ATGCAAGATGTGTTGTCTCTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178355916 21 + 178775436 ATGCAAGATGTGTTGTCTCTC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135295068 21 + 135778131 ATGCAAGATGTGTTGTCTCCC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190417569 21 - 190850796 ATGCAAGATGTGTTGTGTCTC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87543382 20 - 129401213 CTGCAGAAC-TGTTGTCTCTC
i mm10.chr8                C 0 C 0
s canFam3.chr16             17849341 21 -  59632846 ACACAAGAGGTGTTGTTGCTC
i canFam3.chr16            I 770 C 0

a score=78026.000000
s hg38.chr4_KI270925v1_alt    156549 47 +    555799 TGTAATCTGAGTTTTGACAAACCAAATCTGCTGCCCCATTCTTC-----------------------------------------------------TGA
s panTro4.chr4             192851770 97 + 193495092 TGTAATTTGAGTTTTGACAAACCAAATCTGCTGCTCCATTCTTCTGGGTGTCTTT--CACTTGGA-CAAGAGAGAGAAAAGGAAAGCATAGCAGTTGTGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197954299 97 + 198332218 TGTAATTTGAGTTTTGACAAACCACATCTGCTGCCCCATTCTTCTGGGTGTCTTT--CACTTGGA-CAAGAGAGAGAAAAGGAAAGCATGGCAGTTGTGA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113709420 92 + 115148730 TGTAATTTGAGTTTTGACAAACCAGTTCTGCTGCCCCATTCTTCTGGGTGTCTTT--CACTTGGA-CAAGAGAGAGAAAAGGAAAGCACAGCAGT-----
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183548298 47 + 184069350 TGTCATTTGAGTTTTGACAAACTGGTTCTGCTGCCCCATTCTTCTGA-----------------------------------------------------
i rheMac3.chr5             C 0 I 83
s macFas5.chr5             188931657 47 + 189454096 TGTCATTTGAGTTTTGACAAACTGGTTCTGCTGCCCCATTCTTCTGA-----------------------------------------------------
i macFas5.chr5             C 0 I 36
s papAnu2.chr5             178355937 47 + 178775436 TGTCATTTGAGTTTTGACAAACTGGTTCTGCTGCCCCATTCTTCTGA-----------------------------------------------------
i papAnu2.chr5             C 0 I 36
s chlSab2.chr7             135295089 47 + 135778131 TGTCATTTGAGTTTTGACAAACCAGTTCTGCTGCCCCATTCTTCTGA-----------------------------------------------------
i chlSab2.chr7             C 0 I 82
s mm10.chr8                 87543402 84 - 129401213 TTCAATTTGACACCCAACAAA--------------CCTTTCTCTTGAGTCTTTTA--GACACAGACAAGATAAAGAGAAAAGAAAACCTTATAGTCCTGG
i mm10.chr8                C 0 C 0
s canFam3.chr16             17849362 86 -  59632846 TGCACTTGGAGTTCTAGCAAAGCAGTTCAGCTGCCCCATTCCTCTGAGTCTCTATCACACTTGGGCAAGAGAAAAAGAAAGGAAAA--------------
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190417590  0 - 190850796 C

a score=-14274.000000
s hg38.chr4_KI270925v1_alt    156596 10 +    555799 TGC-----AGCAGA--------------------------T
s panTro4.chr4             192851867 33 + 193495092 TGT-----AACGGAA---ACTACTTCAAACTACAACTTCCG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197954396 33 + 198332218 TGT-----AACAGAA---ACTACTTCAAACTACAACTTCCG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113709512 38 + 115148730 TGTGATGGAACGGAA---ACTACTTCAAACTACGACTTCCG
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188931740 10 + 189454096 CAT-----AGCAGTT--------------------------
i macFas5.chr5             I 36 I 37
s papAnu2.chr5             178356020 10 + 178775436 cat-----aGCAGTT--------------------------
i papAnu2.chr5             I 36 I 37
s mm10.chr8                 87543486 26 - 129401213 CAT-----AGGGAAGGGGACTGTTTCCAGCC----------
i mm10.chr8                C 0 C 0
s canFam3.chr16             17849448 10 -  59632846 TAA-----GGCAGTG--------------------------
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190417590  0 - 190850796 C
e chlSab2.chr7             135295136 82 + 135778131 I
e rheMac3.chr5             183548345 83 + 184069350 I

a score=142649.000000
s hg38.chr4_KI270925v1_alt    156606  66 +    555799 GTAGCATGGTG------------------------------------TC--TGGCGCAGAGAAAGCCTTCCGAGTGGGTGCTTCA-TATCAGTCACTGTGTGAGT
s panTro4.chr4             192851900  66 + 193495092 GTAGCATGGTG------------------------------------TC--TGGCGCAGAGAAAGCCTTCCGTGTGGGTGCTTCA-TATCAGTCACTGTGTGAGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197954429  66 + 198332218 GTAGCATGGTG------------------------------------TC--TGGCGCAAAGAAAGCCTTCCGTGTGGGTGCTTCA-TATCAGTCACTGTGTGAGT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113709550  65 + 115148730 GTAGCATGGTG------------------------------------TC--TGGCGCAAAGAAAGCCTTCCGTGT--GTGCTTCATTATCAGTCACTGTGTGAGT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183548428  59 + 184069350 GTAGCATGGTG------------------------------------TC--TGGCGCAAAGAAAGCCTTCCGTGTGGGTGCTTCA-TGTCAGTCACTG-------
i rheMac3.chr5             I 83 C 0
s macFas5.chr5             188931787  59 + 189454096 GTAGCATGGTG------------------------------------TC--TGGCGCAAAGAAAGCCTTCCGTGTGGGTGCTTCA-TGTCAGTCACTG-------
i macFas5.chr5             I 37 C 0
s papAnu2.chr5             178356067  59 + 178775436 GTAGCATGGTG------------------------------------TC--TGGCGCAAAGAAAGCCTTCGGTGTGGGTGCTTCG-TGTCAGTCACTG-------
i papAnu2.chr5             I 37 C 0
s chlSab2.chr7             135295218  66 + 135778131 GTAGCATGGTG------------------------------------TC--TGGCGCAAAGAACGCCTTCCATGTGGGTGCTTCA-TGCCAGTCACTGTGTGAGT
i chlSab2.chr7             I 82 C 0
s mm10.chr8                 87543512  68 - 129401213 ACAGCTCTGTT------------------------------------CCTGTGATGCAAAGAAAGCCTCTGCTCGCTGTGGTTCT-TAGAAGTTCATGAACAACT
i mm10.chr8                C 0 C 0
s canFam3.chr16             17849458 102 -  59632846 GTGATATAGTGGAAATTCACTCAAAGTATAGTTTCCAGTTTATAGCATC--TGCCACAGAGGATGCATTCAGGGGTGGCTCTTCA-TATTGGTTGGTGTGTGATT
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190417590   0 - 190850796 C

a score=1240242.000000
s hg38.chr4_KI270925v1_alt    156672 384 +    555799  
s panTro4.chr4             192851966 384 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197954495 384 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113709615 384 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183548487 384 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188931846 383 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178356126 384 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135295284 385 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190417590 382 - 190850796  
i calJac3.chr3             C 0 I 4
s mm10.chr8                 87543580 403 - 129401213  
i mm10.chr8                C 0 I 2
s canFam3.chr16             17849560 653 -  59632846  
i canFam3.chr16            C 0 C 0

a score=280715.000000
s hg38.chr4_KI270925v1_alt    157056 115 +    555799 TCCCTG--TTCA-TACTCAGCGTTC-GGGGGCTGTAGGACATCCTGATCTGCCTTCTACTCACATGCGGCTGGAA-AA--AACAACAGCTCACAAAGGAAAGAAAACCTAAATAATAGCTTA
s panTro4.chr4             192852350 116 + 193495092 TCCCTG--TTCA-TTCTCAGTGTTC-GGGGGCTGTAGGACATCCTGATCTGCCTTCTACTTACAGGTGGCTGGAAGAA--AACAACAGCTCACAAAGGAAAGAAAACCTAAATAATAGCTTA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197954879 116 + 198332218 TCCCTG--TTCA-TTCTCAGCATTT-GGGGGCTGTAGGACATCCTGATCTGCCTTCTACTCACAGGCGGCTGGAAGAA--AACAACAGCTTATAAAGGAAAGAAAACCTAAATAATAGCTTA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113709999 117 + 115148730 GCCCTG--TTCA-TTCTCAGCGTTCAGGGGGCTGTAGGACATCCTGATCTGCCTTCTACTCACAGGCAGCTGGAAGGA--AACGACAGCTCACAAAGGAAAGAAAACCTAAATAATAGCTTA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183548871 117 + 184069350 GTCCTG--TTCA-TTCTCAGCGTTCAGGGGGCGGTAGGACATCCTGATCCGCCTTCTAATCACAGGCGACTGGAAGAA--AACGCCAGCTCACAAAGGAAAGAAAACCTAAATAATAGCTTA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188932229 117 + 189454096 GTCCTG--TTCA-TTCTCAGCGTTCAGGGGGTGGTAGGACATCCTGATCCGCCTTCTAATCACAGGCGACTGGAAGAA--AACGCCAGCTCACAAAGGAAAGAAAACCTAAATAATAGCTTA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178356510 117 + 178775436 gTCCTG--TTCA-TTCTCAGCGTTCAGGGGGCGGTGGGACATCCTGATCTGCCTTCTAATCACAGGCGGCTGGAAGAA--AACGCCAGCTcgcaaaggaaagaaaacctaaataatagCTTA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135295669 117 + 135778131 GTCCTG--TTCA-TTCTCAGCGTTCAGGGGGCGGTAGGACATCCTGATCCGCCTTCTAATCACAGGCGGCTGGAAGAA--AACGCCAGCTCACAAAGGAAAGAAAACCTAAATAATAGCTTA
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87543985 112 - 129401213 GCCCAG--TTTAGCCCTAATCATTC-AGAGGCCATATATCCTCTTAATCCATTTTGTCTTTGTAAACAGCTTAGGAAA--AAT-----TTGCAAAAGGACCAAAAATATAAACAATAATTTA
i mm10.chr8                I 2 I 319
s canFam3.chr16             17850213 105 -  59632846 GCAGTGAATTCAGTTCTAAATTTTTCTAAGATTAGACAGTATTCTGAT-TGCTGTCTATTCACAAGGAGCTAAGATAAATAATGCCTGCACACCAAGGAAAGAAAA----------------
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190417972   4 - 190850796 I

a score=318760.000000
s hg38.chr4_KI270925v1_alt    157171 176 +    555799 TTTATATAGTAATtagatgatagatgatagatagat------------------------agatagatagatagatagatagatagatagatagatg-----------------------------------------------------agagagaga----gagagagagagGTGAGGAAAACTCTTTAAAATATCACCATGG-TAAATATAATATCAGAGATTCTTCATATTTG-TTTGTTTTGCTTTTGGAAGTA
s panTro4.chr4             192852466 164 + 193495092 TTTACATAGTAATtagatgata---gatagat-gat------------------------ag--agatagatagatagatagatagatagatagat---------------------------------------------------------GAGAGA----CAGAGAGAGAGGTGAGGAAAACTCTTTAAAATATCACCATGG-TAAATATAATATCAGAGGTTCTTC--ATTTG-TTTGTTTTGCTTTTGGAAGTA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197954995 154 + 198332218 TTTACATAGTAATtagatgata-----------gat---------------------------------gatagataggtagatagatagatagatg-----------------------------------------------------agagacaga----gagagagacagGTGAGGAAAACTCTTTAAAATATCACCATGG-TAAATATAATATCAGAGGTTCTTC--ATTTG-TTTGTTTTGCTTTTGGAAGTA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113710116 180 + 115148730 TTTACATAGTAATtagatgatagatggtagatagat------------------------agatagatagatagatagatagatagatggatagatgag---agac--------------------------------------------agagagaga----gagagagagagGTGAGGAAAACTCTTTAAAATATCACCATGG-TAAATATAATGTCAGAGGTTCTTC--ATTTG-TTTGTTTTGCTTTTGGAAGTA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183548988 159 + 184069350 TTTATACAGTAATtagat-------gatagatagat------------------------------------agacagacagacagacagatagatG-----------------------------------------------------AGGGACAGAGCGGGAGAGAGAGAGGTGAGGAAAACTCTTTAAAATATCACCATGG-TAAATAGAATATCAGAGGTTCTTC--ATTTG-TTTGTTTCACTTTTGGAAGTA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188932346 161 + 189454096 TTTATACAGTAATtagatgata---gatagatagat------------------------------------agatagatagatagatagatagata-----------------------------------------------------gGAGACAGAGC--GAGAGAGAGAGGTGAGGAAAACTCTTCAAAATATCACCATGG-TAAATAGAATATCAGAGGTTCTTC--ATTTG-TTTGTTTCGCTTTTGGAAGTA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178356627 189 + 178775436 TTTATACAGTAattagaagata---gatagatagat--------agatagatagatagatagatagacagacagacagatagacagacagatagata-----------------------------------------------------ggagacagagc--gagagagagaggtgaggaaaactctttaaaatatcaCCATGG-TAAATAGAATATCAGAggttcttc--atttg-tttgttttgcttttggaaGTA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135295786 197 + 135778131 TTTATACAGTAATtagatgata---gataggtaggtaggtaggtagatagatagatagatagatagatagatagatagatagacagacagatagatg-----------------------------------------------------agagacagagc--gagagagagagGTGAGGAAAACTCTTTAAAATATCACCATGG-TAAATAGAATATCAGAGGTTCTTC--ATTTG-TTTGTTTTGCTTTTGGAAGTA
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17850318 207 -  59632846 -----ACAATACTGAAGTGCTa---tacacacacac------------------------acacacacatatatatatatatactgatatacgtacacgcacaaacaTCATCATACCTTTAtgtgtgtgtgtgtgtgtgtgtgtgtatgGAGGGAGAAA----GAGAGAGTCAGATG-GGTAAACTAGTTGGAATATCACCATTACTAAATATTAAAT---------TTC--ATTTGTTTTGTTTTATTTGAAGA----
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87544097 319 - 129401213 I
e calJac3.chr3             190417972   4 - 190850796 I

a score=1463471.000000
s hg38.chr4_KI270925v1_alt    157347 553 +    555799  
s panTro4.chr4             192852630 551 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197955149 551 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113710296 546 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183549147 542 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188932507 542 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178356816 542 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135295983 552 + 135778131  
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87544416 511 - 129401213  
i mm10.chr8                I 319 C 0
s canFam3.chr16             17850525 548 -  59632846  
i canFam3.chr16            C 0 I 186
e calJac3.chr3             190417972   4 - 190850796 I

a score=1722.000000
s hg38.chr4_KI270925v1_alt    157900 1 +    555799 c
s panTro4.chr4             192853181 1 + 193495092 c
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197955700 1 + 198332218 c
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113710842 1 + 115148730 c
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183549689 1 + 184069350 t
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188933049 1 + 189454096 t
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178357358 1 + 178775436 t
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135296535 1 + 135778131 c
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87544927 1 - 129401213 C
i mm10.chr8                C 0 I 9860
s canFam3.chr16             17851259 1 -  59632846 C
i canFam3.chr16            I 186 C 0
e calJac3.chr3             190417972 4 - 190850796 I

a score=1119236.000000
s hg38.chr4_KI270925v1_alt    157901 495 +    555799  
s panTro4.chr4             192853182 487 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197955701 466 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113710843 477 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183549690 482 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188933050 482 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178357359 479 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135296536 482 + 135778131  
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17851260 414 -  59632846  
i canFam3.chr16            C 0 I 3589
e mm10.chr8                 87544928 9860 - 129401213 I
e calJac3.chr3             190417972   4 - 190850796 I

a score=3002076.000000
s hg38.chr4_KI270925v1_alt    158396 1305 +    555799  
s panTro4.chr4             192853669 1298 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197956167 1305 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113711320 1311 + 115148730  
i nomLeu3.chr7b            C 0 I 1020
s rheMac3.chr5             183550172 1312 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188933532 1312 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178357838 1314 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135297018 1313 + 135778131  
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87544928 9860 - 129401213 I
e canFam3.chr16             17851674 3589 -  59632846 I
e calJac3.chr3             190417972    4 - 190850796 I

a score=2086493.000000
s hg38.chr4_KI270925v1_alt    159701 917 +    555799  
s panTro4.chr4             192854967 918 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197957472 917 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113713651 918 + 115148730  
i nomLeu3.chr7b            I 1020 C 0
s rheMac3.chr5             183551484 894 + 184069350  
i rheMac3.chr5             C 0 I 1
s macFas5.chr5             188934844 894 + 189454096  
i macFas5.chr5             C 0 I 325
s papAnu2.chr5             178359152 903 + 178775436  
i papAnu2.chr5             C 0 I 1
s chlSab2.chr7             135298331 900 + 135778131  
i chlSab2.chr7             C 0 I 1
e mm10.chr8                 87544928 9860 - 129401213 I
e canFam3.chr16             17851674 3589 -  59632846 I
e calJac3.chr3             190417972   4 - 190850796 I

a score=-3534.000000
s hg38.chr4_KI270925v1_alt    160618 2 +    555799 ct
s panTro4.chr4             192855885 2 + 193495092 ct
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197958389 2 + 198332218 ct
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113714569 2 + 115148730 ct
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183552379 1 + 184069350 c-
i rheMac3.chr5             I 1 I 324
s macFas5.chr5             188936063 1 + 189454096 c-
i macFas5.chr5             I 325 C 0
s papAnu2.chr5             178360056 1 + 178775436 c-
i papAnu2.chr5             I 1 C 0
s chlSab2.chr7             135299232 1 + 135778131 c-
i chlSab2.chr7             I 1 C 0
e mm10.chr8                 87544928 9860 - 129401213 I
e canFam3.chr16             17851674 3589 -  59632846 I
e calJac3.chr3             190417972 4 - 190850796 I

a score=494280.000000
s hg38.chr4_KI270925v1_alt    160620 212 +    555799 actttcagttctttaagaaacctgtgtactgttttcaatagagtttgtactaatttacatttccaccactggtatatcagaattcccttttcaccacatccacaccatctattgtgttttgactttttaataatggctattcttgcaggaggaatgtagtgtcttgctgggcttttaattcacatctccctgatga-tttgtaatattgagca
s panTro4.chr4             192855887 212 + 193495092 acttttagttctttaagaaacctgtgtactgttttcagtagagtttgtactaatttacgtttccaccactggtatatcagaattcccttttcaccacatccacaccatctattgtgttttgactttttaataacggctattcttgcaggaggaatgtagtgtctcactggggttttaattcccatctccctgatga-tttgtaatattgagca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197958391 212 + 198332218 acttttagttctttaagaaacctgtgtactgttttcaatagagtttgtactaatttacatttccatcactggtatatcagaattcccttttcaccacgtccacaccatccattgttttttgactttttaataatggctattcttgcaggagtaatgtagtgtctcactggggttttaattcacatctccctgatga-tttgtgatattgagca
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113714571 212 + 115148730 acttttagttctttaagaaacctgtgtactgttttcaatagagtttgtactaatttacatttccaccagtggtatatcagaattcccttttcaccacatccacaccatctattgttttttgactttttaataatggctattcttgcaggagtaatgtagtgtctcactggggttttaattcacatctccctgatga-tttgtaatattgagca
i nomLeu3.chr7b            C 0 I 103
s rheMac3.chr5             183552704 212 + 184069350 acttttagttctttaagaaacctgtgtactgttttcaacagagtttatactaatttacatttccaccagtggtataccagaattccattttcaccacatccacaccatctgttg-tttttgactttttaatagtggctattcttgcaggagtaatgtagtgtctcactggggttataatttacatttccctgacgattttgtaatattgagca
i rheMac3.chr5             I 324 C 0
s macFas5.chr5             188936064 212 + 189454096 acttttagttctttaagaaacctgtgtactgttttcaacagagtttatactaatttacatttccaccagtggtataccagaattccattttcaccacatccacaccatctgttg-tttttgactttttaatagtggctattcttgcaggagtaatgtagtgtctcactggggttttaatttacatttccctgatgattttgtaatattgagca
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178360057 212 + 178775436 acttttagttctttaagaaaccTGTGTACTGTTTTCAACAGAgtttatactaatttacatttcca-cagtGGTATACCagaattccattttcaccacatccacaccatctgttgttttttgactttttaataatggctattcCTGCAGGAGTAATGTAGTGTCTCACTggggttttaatttacatttccctgatgattttgtaatattgagca
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135299233 212 + 135778131 acttttagttctttaagaaacctgtgtactgttttcaatagagtttatactaatttacatttccacaagtggtatatcagaattccattttcaccacatccacatcatctattgttttttgactttctaataatggctattcttgcaggagtaatgtagtgtctcattggggttttaatttacatttccctgatgattttgtaatattgagc-
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87544928 9860 - 129401213 I
e canFam3.chr16             17851674 3589 -  59632846 I
e calJac3.chr3             190417972   4 - 190850796 I

a score=578114.000000
s hg38.chr4_KI270925v1_alt    160832 250 +    555799 ttttttttcacatttgctgaccatttgtatatcttcttttgagaattgtctgttcatttcatttgttcatttttgatgggattattta-ttttttcttgctgatttctttaagtttcttgtatattctggatattagtcctttgttggacatatagtttgcaaatattttttcccattctatgggttatctgtttactctgatgattatttctcttgctgtacagaagctttttagtttaataaggttcca
s panTro4.chr4             192856099 249 + 193495092 ttttttttcacatttgctgaccatttgtatatcttcttttgagaattgtctgttcatgtcatttgttcatttttgatgggattattta-ttttttcttgctgatttctttaagtttcttgtatattctggatattagtcctttgttggacatatagtttgcaaatattttttcccattttatgggttatctgtttactctgatgattatttctcttgctgtacagaagcttttt-gtttaataaggttcca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197958603 250 + 198332218 -tttttttcacatttgctgaccatttgtatatcttcttttgagaattttctgttcatgtcatttgttcatttttgatgggattatgtatttttttcttgctgatttcttaaagtttcttgtatattctggatatttgtcctttgttggacacatagtttgcaaatattttttcccattctatgggttatctgtttactctgatgattatttctcttgctgtacagaagctttttagtttaataaggttcca
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113714886 242 + 115148730 ttttttttcacacttgctgaccacttgtata---tcttttgagaattgtctgtttatgtcatttgttcatttttgatgggatta-----ttttttcttgctgatttctttaagtttcttgtatattctgtatattagtcctttgttggacacatagtttgcaaat-ttttttcccattctatgggttatctgtttactctgatgattatttctcttgctgtacagaagctttttagtttaataaggttcca
i nomLeu3.chr7b            I 103 C 0
s rheMac3.chr5             183552916 249 + 184069350 ttttttttcacatttgctgaccatttgtgtatcttcttttgagaattgtctgttcatgtcatttgttcatttttgataggattattta-ttttttcttgctgatttgtttaagtttcttgtatatactggatatttgtcctttgctgaacacatagtttgcaaat-atttttcccattctatgggctatctgtttactctgatgattatttctcttgctgtacagaagctttttagtttaatgaggttcca
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188936276 249 + 189454096 ttttttttcacatttgctgaccatttgtgtatcttcttttgagaattgtctgttcatgtcatttgttcatttttgataggattattta-ttttttcttgctgatttgtttaagtttcttgtatatactggatatttgtcctttgctgaacacatagtttgcaaat-atttttcccattctatgggctatctgtttactctgatgattatttctcttgctgtacagaagctttttagtttaatgaggttcca
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178360269 249 + 178775436 ttttttttcacatttgctgaccatttgtgtatcttcttttgagaattgtctgttcatgtcatttgttcatttttgataggattattta-ttttttcttgctgatttgtttaagtttcttatatataCTGGATATTTGTCCTTTGCTGAacacatagtttgcaaat-atttttcccattctatgggccatctgtttactctgatgattatttctctcgctgtacagaagctttttagtttaatgaggtTCCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135299445 249 + 135778131 ttttttttcacatttgctgaccatttgtgtatcttcttttgagaattgtctgttcatgtcatttgttcatttttgatgggattattta-ttttttcttgctgatttgtttaagttccttatacatactggatatttattctttgttgaacacatagtttgcaaat-atttttcccattctatgggccatctgtttactcaaatgattatttctctcgctgtacagaagtcttttagtttaatgaggttcca
i chlSab2.chr7             C 0 I 211
e mm10.chr8                 87544928 9860 - 129401213 I
e canFam3.chr16             17851674 3589 -  59632846 I
e calJac3.chr3             190417972   4 - 190850796 I

a score=4304871.000000
s hg38.chr4_KI270925v1_alt    161082 1823 +    555799  
s panTro4.chr4             192856348 1822 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197958853 1833 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113715128 1821 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183553165 1838 + 184069350  
i rheMac3.chr5             C 0 I 32
s macFas5.chr5             188936525 1824 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178360518 1824 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135299905 1825 + 135778131  
i chlSab2.chr7             I 211 C 0
e mm10.chr8                 87544928 9860 - 129401213 I
e canFam3.chr16             17851674 3589 -  59632846 I
e calJac3.chr3             190417972    4 - 190850796 I

a score=57090.000000
s hg38.chr4_KI270925v1_alt    162905 33 +    555799 ttgtttctccttccaccatgattggatgtctcg
s panTro4.chr4             192858170 33 + 193495092 ttgtttctccttccaccatgattggatgtctcg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197960686 33 + 198332218 ttgtttccccttccaccatgattggatgtctca
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113716949 33 + 115148730 ttgtttccccttccaccatgattggatgtctca
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188938349 33 + 189454096 ttgtttccccttccaccgtgattggaagtctcc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178362342 33 + 178775436 ttgtttccccttccaccatgatcggaagtctcc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135301730 33 + 135778131 ttgtttccccttccaccgtgattggaagtctcc
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87544928 9860 - 129401213 I
e canFam3.chr16             17851674 3589 -  59632846 I
e calJac3.chr3             190417972  4 - 190850796 I
e rheMac3.chr5             183555003 32 + 184069350 I

a score=819789.000000
s hg38.chr4_KI270925v1_alt    162938 338 +    555799 tgaggcctccccagccatgatgaac--tgtgagtcaattaaacctttttcctttataaattatccagtctcaggtatgtctttataagcagtgtgaaagtggactaatacagtaaattggtaccaggtgatggggtgctgctgtaaagacacctgaaaatgtagaaacaactttggaactgggtaacagacagagtttggaaatgtttggagggctcag-aaaaaa---ataagaaaatgtgggaaagtttggaaggtcctagagactttgagacctcagaagacaggaagatgagggaaagtttggaacttcctagagacttgtagaatggctttgaccaaaa
s panTro4.chr4             192858203 338 + 193495092 tgaggcctccccagccatgatgaac--tgtgagtcaattaaacctttttcctttataaattatccagtctcaggtatgtctttatgagcagtgtgaaagtggactaatacagtaaattggtaccaggtgatggggtgctgctgtaaagacacctgaaaatgtagaagcaactttggaactgggtaacagacagagtttggaaatgtttggagggctcag-aaaaaa---ataagaaaatgtgggaaagtttggaacttcctagagactttgggagctcagaagacaggaagatgagggaaagtttggaacttcctagagacctgtagaatggctttgaccaaaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197960719 338 + 198332218 tgaggcctccccagccatgatgaac--tgtcagtcaattaaacctttttccttcataaattatccagtctcaggtatgtctttattagcagtgtgaaagtggactaatacagcaaattggtaccaggtaatgggatgctgctgtaaagacacctgaaaatgtagaagcaactttggaactgggtaacagacagagtttggaaatgtttggagggctcag-aaaaaa---ataagaaaatgtgggaaagtttggaacttcctagagacttcgagagctcagaagacaggaagatgaaggaaagtttggaacttcctagagacttgtagaatggctttgaccaaaa
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113716982 338 + 115148730 tgaggcctccccagccatgatgaac--tgtgagtcaattaaacctttttcctttataaattatccagtctcaggtatgtctttattagcagtgtgaaagtggactaatacagtaaattggtaccaggtaatggggtgctgctgttaagacacctgaaaatgtagaagcaactttggaactgggtaacagacagagtttggaaatgtttggagggctcag-aaaaca---acaagaaaatgtgggaaagtttggaacttcctagagacttcaagagctcagaagacaggaagatgagggaaagtttggaacttcctagagacttgtagaatggctttgaccaaaa
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183555035 342 + 184069350 tgaggcctccccagccatg-tgagcaatgtgagtccattaaaccttttccctttataaattatccagtctcaggtatgtctttattagcagtgtgaaagtggactaatacagtaaattggtaccaggtaatgggatgctgctgtaaagacacctgaaaatgtagaaacaactttggaactgggtaacagacagaggttggaaatgtttggagggctcag-aaaaaaatgataagaaaatgtgggaaagtttggaacttcctagaggcttagagaactcagaagacaagaagatgagggaaagtttggaacgtcctagagacgtgtagaacggctttgaccaaaa
i rheMac3.chr5             I 32 C 0
s macFas5.chr5             188938382 341 + 189454096 tgaggcctccccagccatgatgaac--tgtgagtcaattaaaccttttccctttataaattatccagtctcaggtatgtctttattagcagtgtgaaagtggactaatacagtaaattggtaccaggtaatgggatgctgctgtaaagacacctgaaaatgtagaaacaactttggaactgggtaacagacagaggttggaaatgtttggagggctcag-aaaaaaatgataagaaaatgtgggaaagtttggaacttcctagaggcttggagaactcagaagacaagaagatgagggaaagtttggaacgtcctagagacgtgtagaacggctttgaccaaaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178362375 340 + 178775436 tgaggcctccccagccatgatgaac--tgtgagtcaattaaaccttttccctttataaattatccagtctcaggtatgtctttattagcagtgtgaaagtggactaatacagtaaattggtaccaggtaatgggatgctgctgtaaagacacctgaaaatgtagaaacaactttggaact-ggtaacagacagaggttggaaaTGTTTGGAGggctaag-aaaaaaatgataagaaaatgtgggaaagtttggaacttcctagaggcttggagaactcagaagacaggaagatgagggaaagtttggaacttcctagagacgtgtagaatagctttgaccaaaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135301763 342 + 135778131 tgaggcctccccagccatgatgaac--tgtgagtcaattaaaccttttccctttataaattatccagtctcaggtatgtctttattagcagtgtgaaagtggactaatacagtaaattggtaccaggtaatggggtggtgctgtaaagacacctgaaaatgtagaatcaactttggaactgggtaacaggcagaggttggaaatgtttggagggctcagaaaaaaaatgataagaaaatgtaggaaagtttggaacttcctagaggcttggagagttcagaagacaggaagatgagggaaagtttggaacttcctagagacttgtagaatggctttgaccaaca
i chlSab2.chr7             C 0 I 6
e mm10.chr8                 87544928 9860 - 129401213 I
e canFam3.chr16             17851674 3589 -  59632846 I
e calJac3.chr3             190417972   4 - 190850796 I

a score=65061.000000
s hg38.chr4_KI270925v1_alt    163276 38 +    555799 tgctgttagtgatatggacaataaagtccaggctaagg
s panTro4.chr4             192858541 38 + 193495092 tgctgttagtgatatggacaataaagtccaggccaagg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197961057 38 + 198332218 tgttgttagtgatatggacaataaagtccaggctaagg
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113717320 37 + 115148730 cgctgttagtgatatgggcaa-aaagtccaggctaagg
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183555377 38 + 184069350 tgctgttggtgatatgaacaataaagtccaggctgagg
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188938723 38 + 189454096 tgctgttggtgatatgaacaataaagtccaggctgagg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178362715 38 + 178775436 tgctgttggtgatatgaacaataaagtccaggctgagg
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87544928 9860 - 129401213 I
e canFam3.chr16             17851674 3589 -  59632846 I
e calJac3.chr3             190417972  4 - 190850796 I
e chlSab2.chr7             135302105  6 + 135778131 I

a score=1512220.000000
s hg38.chr4_KI270925v1_alt    163314 639 +    555799  
s panTro4.chr4             192858579 637 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197961095 639 + 198332218  
i ponAbe2.chr4             C 0 I 9204
s nomLeu3.chr7b            113717357 637 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183555415 639 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188938761 639 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178362753 639 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135302111 637 + 135778131  
i chlSab2.chr7             I 6 C 0
e mm10.chr8                 87544928 9860 - 129401213 I
e canFam3.chr16             17851674 3589 -  59632846 I
e calJac3.chr3             190417972   4 - 190850796 I

a score=10844197.000000
s hg38.chr4_KI270925v1_alt    163953 6237 +    555799  
s panTro4.chr4             192859216 6243 + 193495092  
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113717994 6231 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183556054 6246 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188939400 6240 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178363392 6259 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135302748 6271 + 135778131  
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87544928 9860 - 129401213 I
e canFam3.chr16             17851674 3589 -  59632846 I
e calJac3.chr3             190417972    4 - 190850796 I
e ponAbe2.chr4             197961734 9204 + 198332218 I

a score=4729465.000000
s hg38.chr4_KI270925v1_alt    170190 2184 +    555799  
s panTro4.chr4             192865459 2183 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197970938 2178 + 198332218  
i ponAbe2.chr4             I 9204 C 0
s nomLeu3.chr7b            113724225 2197 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183562300 2240 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188945640 2241 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178369651 2249 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135309019 2248 + 135778131  
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87544928 9860 - 129401213 I
e canFam3.chr16             17851674 3589 -  59632846 I
e calJac3.chr3             190417972    4 - 190850796 I

a score=1262734.000000
s hg38.chr4_KI270925v1_alt    172374 515 +    555799  
s panTro4.chr4             192867642 515 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197973116 521 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113726422 524 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183564540 522 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188947881 522 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178371900 522 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135311267 522 + 135778131  
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87554788 496 - 129401213  
i mm10.chr8                I 9860 I 323
e canFam3.chr16             17851674 3589 -  59632846 I
e calJac3.chr3             190417972   4 - 190850796 I

a score=816896.000000
s hg38.chr4_KI270925v1_alt    172889 337 +    555799 AAACTCCTCCAGCCTGCATCCTCGGATGTCTAATACGGTTTATGTGAGCTCTGTTGGCGTTTGTCTATTTTATTCTCGCTTGTGGTAAATTGAAGATTTCAGTGTTGACATTCTCTGTCTCCATGGATTCTATATGGTTTCGTTTGCTCTCAATGTGAACTTTATGGATTTTTGGAGAGGATGTGTGGGAGATTCAGAATCAGTCTGTCAACATTATTTTCCAAACCTGCAAATCTGAGAGTTAATTTTGTAAGAAAAAAATAAGAACTCTCCCACATATACACTctctataagtgtgagctgcatacagttacttctttccaaagaatataatgtg
s panTro4.chr4             192868157 337 + 193495092 AAACTCCTCCAGCCTGCATCCTCAGATGTCTAATACAGTTTATGTGAGCTCTGTTGGCATTTGTCTATTTTATTCTCTCTTGTGGTAAATTGAAGATTTCAGTGTTGACATTCTCTGTCTCCATGGATTCTATATGGTTTCGTTTGCTCTCAATGTGAACTTTATGGATTTTTGGAGAGGATGTGTGGGAGATTCAGAATCAGTCTGTCAACATTATTTTCCAAACCTGCAAATCTGACAGTTAATTTTGTAAGAAAAAAATAAGAACTCTCCCACATATACACTctctataagtgtgagctgcatacagttacttctttccaaagaatataatgtg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197973637 337 + 198332218 AAACTCCTCCAGCCTGCATCCTCAGATGTCTAATATGGTTTATGTGAGCTCTGTTGGCATTTGTCTATTTTATCCTCGCTTGTGGTAAATTGAAGGTTTCAATGTTGACAGTCTCTGTCTCCATGGATTCTATATGGTTTCGTTTGCTCTCAATGTGAACTTTATGGATTTTTGGAGAGGATGTGTGGGAGATTCAGAATCAGTCTGTCAACATTATTTTCCAAACCTGCAAATCTGAGAGTTAATTTTGTAAGAAAAAAATAAGGACTCTCCCACATATACACTctctataagtgtgagctgcatacagttacttctttccaaagaatataatatg
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113726946 337 + 115148730 AAAGTACTCCAGCCTGCATCCTCAGATATCTAATACAGTTTATGTGAGCTCTGTTGGCATTTGTCTATTTTATTCTCTCTTGTGGTAAATTGAAGATATCAATGTTGACATTCTCTGTCTCCATGGATTCTATATGGTTTCGTTTGCTCTCAATGTGAACTTTATGGATTTTTGGAGAGGATGTGTGGGAGATTCAGAATCAGTCTGTCAACATTATTTTCCAAACCTGCAAATCTGAGAGTTAATTTTGTAAGAAAAAAATAAGGACTCTCCCACATATACACTctccataagtgtgagctgcatacagttacttccttccaaagaatataatatg
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183565062 336 + 184069350 AAACTCCTCTAGCCTGCATCCTCAGATGTCTAATAGGGTTTACGTGAGCTCTCTTGACA-TTGCCTATTTTATTCTCTCCTGTGGTAAATTGAAGATTTCAATGTTAACATTCTCTGTCTCCATGGATTCTATACGGTTTTGTTTGCTCTCAGTGTGAACTTTATGGATTTTTGGAGAGGATGTGTGGGAGATTCAGAATCAGTCTGTCAACATTATTTTCCAAACCTGCAAATCTGAGAGTTAATTTTGTAAGAAAAAAATAAGGACTCTCCCACATATACACTctccataagtgtgagctgcatatggttacttccttccaaagaacataataca
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188948403 336 + 189454096 AAACTCCTCTAGCCTGCATCCTCAGATGTCTAATAGGGTTTACATGAGCTCTCTTGACA-TTGCCTATTTTATTCTCTCCTGTGGTAAATTGAAGATTTCAATGTTAACATTCTCTGTCTCCATGGATTCTATACGGTTTTGTTTGCTCTCAGTGTGAACTTTATGGATTTTTGGAGAGGATGTGTGGGAGATTCAGAATCAGTCTGTCAACATTATTTTCCAAACCTGCAAATCTGAGAGTTAATTTTGTAAGAAAAAAATAAGGACTCTCCCACATATACACTctccataagtgtgagctgcatatggttacttccttccaaagaacataataca
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178372422 336 + 178775436 AAACTCCTCCAGCCTGCATCCTCAGATGTCTAATAGGGTTTACGTGAGCTCTCTTGACA-TTGCCTATTTTATTCTCTCCTGTGGTAAATTGAAGATTTCAATGTTGACATTCTCTGTCTCCATGGATTCCATACGGTTTTGTTTGCTCTCAGTGTGAACTTTATGGATTTTTGGAGAGGATGTGTGGGAGATTCAGAATCAGTCTGTCAACATTATTTTCCAAACCTGCAAATCTGAGagttaattttgtaagaaaaaaataaggactCTCCCACATATACACTCTCCATAAGTGTGAGCTGCATACGGTTACTTCCTTCCAAAGAACATAATACG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135311789 336 + 135778131 AAACTCCTCCAACCTGCATCCTCAGATGTCTAATAGGGTTTACGTGAGCTCTCTTGACA-TTGCCTATTTTATTCTCTCCTGTGGTAAATTGAAGATTTCAATGTTAACATTCTCTGTCTCCATGGATTCTATACAGTTTTGTTTGCTCTCAGTGTGAACTTTATGGATTTTTGGAGAGGATGTGTGGGAGATTCAGAATCAGTCTGTCAACATTATTTTCCAAACTGGCAAATCTGAGAGTTAATTTTGTAAGAAAAAAATAAGGACTCTCCCACATATACACTctccataagtgtgagctgcatacggttacttccttccaaagaacataatacg
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87555284 323 - 129401213 I
e canFam3.chr16             17851674 3589 -  59632846 I
e calJac3.chr3             190417972   4 - 190850796 I

a score=84021.000000
s hg38.chr4_KI270925v1_alt    173226 33 +    555799 gaaagggggaaatacaaagttctggcaaacact
s panTro4.chr4             192868494 33 + 193495092 gaaagggggaaatacaaagttctggcaaacact
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197973974 33 + 198332218 gaaagggggaaatacaaagttctggcaaacact
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113727283 33 + 115148730 gaaagggggaaatacaaagttctggcaaacact
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183565398 33 + 184069350 gaaaaggggaaatacaaagttctggcaaacact
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188948739 33 + 189454096 gaaaaggggaaatacaaagttctggcaaacact
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178372758 33 + 178775436 GAAAGGGGGAAATACAAAGTTCTGGCAAACACT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135312125 33 + 135778131 gaaaggaggaaatacaaagtTCTGGCAAACACt
i chlSab2.chr7             C 0 I 800
s mm10.chr8                 87555607 32 - 129401213 CAAAAATTAAAGTTCAGAGTCTTGATTCACct-
i mm10.chr8                I 323 C 0
e canFam3.chr16             17851674 3589 -  59632846 I
e calJac3.chr3             190417972  4 - 190850796 I

a score=534899.000000
s hg38.chr4_KI270925v1_alt    173259 280 +    555799 actttcaccaagtgactaaggtgaagatc----agtggttgtgaatcatgctagtggaatatacccttgatatgaacatgg-caacatagtctatgatcttcctctccaaaacacataaatccagtttagtcatgagacaaa---cagacagattttaatagaagagtattatgtaatag--tttaccaaag-ccttcaaaactgttaaggtcaggaaaaacaaggaaagtatatgaaactgtcacagc-caacaggagtctaaggagac-----ataaaaatgaaatataatgtgg
s panTro4.chr4             192868527 280 + 193495092 actttcaccaagtgactaaggtgaagatc----agtggttgtgaatcatgctagtggaatatacccttgatatgaacatgg-caacatagtctatgatcttcctctccaaaacacataaatccagtttagtcatgagacaga---cagacagattttaatagaagagtattatgtaatag--tttaccaaag-ccttcaaaactgttaaggtcaggaaaaacaaggaaagtatatgaaactgtcacagc-caacaggagtctaaggagac-----ataaaaatgaaatataatgtgg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197974007 280 + 198332218 acttttgccaagtgactaaggtgaagatc----aatggtcatgaatcatgctagtggaatacacccttgatatgaacatgg-caacataatctatgatcttcctctccaaaacacacaaatccagtttagtcacgagacaaa---cagacagattttaatagaagactattctgtaatag--tttaccaaag-ccttcaaaactggtaaggtcaggaaaaacaaggaaagtatatgaaactgtcacagc-caacaggagtctaaggagac-----ataaaaatgaaatataatgtgg
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113727316 288 + 115148730 acttttgccaagtgactaaggtgaagatc----aatggtcatgaatcatgctagtggaatatacccttgatatgaacatgg-caatatattctatgatcttcctctccaaaacacataaacccagtttagtcatgagacaaacatcagacagattttaatagaagagtattctgtaatag--tttaccaata-ccttcaaaactgtcaaggtcaggagaaacaaggaaagtatatgaaactgtcacagc-caacaggagtctaaggagactccttagaataatgaaatataatgtgg
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183565431 283 + 184069350 gctttcaccaagtgactaaggtgaagatc----agtggtcatgaatcatgctactggaatatgcccttgatatgaacatgg-caatatattctatgatcttcctctccaaaacacataaatccagtttagtcatgagacaaacatcagatagattttaatagaagagtgttctgtaatag--tttaccaataccctccaaaactgtcaaggtcaggaaaaacaaggaaagtatatgaaa-tgtcatagc-caaaaggattctaaggagac-----ataaaaatgaaatataatgtgg
i rheMac3.chr5             C 0 I 814
s macFas5.chr5             188948772 283 + 189454096 gctttcaccaagtgactaaggtgaagatc----agtggtcatgaatcatgctactggaatatgcccttgatatgaacatgg-caatatattctatgatcttcctctccaaaacacataaatccagtttagtcatgagacaaacatcagatagattttaatagaagagtgttctgtaatag--tttaccaataccctccaaaactgtcaaggtcaggaaaaacaaggaaagtatatgaaa-tgtcacagc-caaaaggattctaaggagac-----ataaaaatgaaatataatgtgg
i macFas5.chr5             C 0 I 411
s papAnu2.chr5             178372791 283 + 178775436 GCTTTCACCAAGTGACTAAGGTGAAGATC----AGTGGTCATGAATCATGCTACTGGAATATGCCCTTGATATGAACATGG-CATTATATTCTATGATCTTCCTCTCCAAAACACATAAATCCAGTTTAGTCATGAGACAAACATCAGATAGATTTTAATAGAAGAGTGTTCTGTAATAG--CTTACCAATACCCtccaaaactgtcaaggtcaggaaaaacaaggaaagtatATGAAA-TGTCACAGC-CAAAAGGATTCTAAggagac-----ataaaaatgaaatataatgtgg
i papAnu2.chr5             C 0 I 412
s mm10.chr8                 87555639 272 - 129401213 acttaaactatgtaattaaagttaggatcagtaagtagccttgaattgtttttatagtatctgtcctcagtat-cacatgatcagagtattc------------cttcaaaatgcatcaacccagtttcctgatgagaacaatatcagacagatgccaatagaaaactgttttataatatcccttggcagtg-ccctc-aaacttctgaggtca-taaaaacaagaaaagtattagaaactgtcataactcagaaggactc----aagag-----aagaaaactaaattgaatgtgt
i mm10.chr8                C 0 C 0
e canFam3.chr16             17851674 3589 -  59632846 I
e calJac3.chr3             190417972   4 - 190850796 I
e chlSab2.chr7             135312158 800 + 135778131 I

a score=190188.000000
s hg38.chr4_KI270925v1_alt    173539 343 +    555799 tgacccaaatagaatctag-----aatacaaaaaaa-----------ttatgtaaaaaacaaggaattctgaaaaaagtatagacttcagaaaataata----atgaagtttagttcactaattatg-aaaaattaactatcatattcatgtataatgttaataatagtgaaaattgggctgggtatgaggatgctgatatacaggaaatctctatattatattatcaatttttaatagctg----taaaacttttatctagaaagtatatttaataataataataataataataaAGACCAAAAAGACAATCAGAAAAGCTGACTTTTACTGATAGAGAAAAATAATATTATTTATATTTTAAAGGT
s panTro4.chr4             192868807 335 + 193495092 tgacccaaatagaatctag-----aatacaaaaaaa-----------ttatgtaaaaaacaaagaattctgaaaaaagtat--acttcagaaaataata----atgaagtttagttcactaattatg-aaaaattaactatcatattcatgtataatgttaataatagtgaaaattgggctgggtatgaggatgctgatatacaagaaatctctatattatattatcaatttttaatagctg----taaaacttttatctagaaagtatatt------tAATAATAATAATAATAAAGACCAAAAAGACAATCAGAAAAGCTGACTTTTACTGATAGAGaaaaataatattatttatattttaaaGGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197974287 341 + 198332218 tgacccaaatagaatctag-----aatacaaaaaaa-----------ttatgtaaaaaacaaggaaatctgaaaaaagtatagacttcagaaaataataatgtatgaagtttagttcactaattatg-aaaaattaactatcatattcatgtataatgttaataatagtgaaaattgggctgggtatgaggatactgatatacaggaaatctctatattatattatcaatttttaactgctg----taaaacttttctctagaaagtatatt------tAATAATAATAATAATAAAGACCAAAAATACAATCAGAAAAGCTGACTTTTACTGATAGGGaaaaataatattatttatattttaaaGGC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113727604 341 + 115148730 tgacccaaatagaaactag-----aatacaaaaaaa-----------ttatgt-aaaaacaaggaaatctgaaaaaagtatagacttcagctaataataatgtatgaagtttagttcactaattatgaaaaaattgaccatcatactcatgtataatgttagtaatagtgaaaattgggctgggtatgaggatgctgatatacaggaaatctctatattatattatcaatttttagtagctg----taaaacttttctctagaaagtatatt------tGATAGTAATAATAATAAAGACCAAAAATACAATCAGAAAAGCTGACTTTTACTGATAGCAAAAAATATTATTATTTATATTTTAAAGGC
i nomLeu3.chr7b            C 0 C 0
s mm10.chr8                 87555911 318 - 129401213 cttcctaagtgaaatatggagcttaatagaaaaaaaatccatttgatttttttaaag----------tctagagaaagtatagacttcagttagtaatgaatgtcagaatttggttcactgattatt-aatagataataattgtaatattgcaaaatgt---taaaagtgggaatgg----ggacataagaatatcattata-------------------attgtcaattttattttgctaaatctgaactttttattttaaaaATCTGaa------ttaaaataataataata-----caaatatataatCAGAAAAAC-ACCTTTTAATGATTAAAGCAAATGTTATT-TTTGAATTATGAAAGT
i mm10.chr8                C 0 I 6417
e canFam3.chr16             17851674 3589 -  59632846 I
e calJac3.chr3             190417972   4 - 190850796 I
e chlSab2.chr7             135312158 800 + 135778131 I
e papAnu2.chr5             178373074 412 + 178775436 I
e macFas5.chr5             188949055 411 + 189454096 I
e rheMac3.chr5             183565714 814 + 184069350 I

a score=5355.000000
s hg38.chr4_KI270925v1_alt    173882 11 +    555799 CATACATATAT
s panTro4.chr4             192869142 11 + 193495092 CATACATATAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197974628 11 + 198332218 CATACACATAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113727945 11 + 115148730 TATACATATAT
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87556229 6417 - 129401213 I
e canFam3.chr16             17851674 3589 -  59632846 I
e calJac3.chr3             190417972  4 - 190850796 I
e chlSab2.chr7             135312158 800 + 135778131 I
e papAnu2.chr5             178373074 412 + 178775436 I
e macFas5.chr5             188949055 411 + 189454096 I
e rheMac3.chr5             183565714 814 + 184069350 I

a score=209285.000000
s hg38.chr4_KI270925v1_alt    173893 316 +    555799 TTTGTAAATATCAAAACTCATTCTCTGGAAATCAATTGTTGACTTATGAACAAATAAATTAGCTATTATTTACTTGAAGTTTTCTT---AAAAAATAAACTC--GTGCTCAGATCTAAATAGACATTTAGTGTTGAAACTTCTGATTGAGTTTCTAAGTAAGAAAATATTTAGTGTTTTAGTATACA---TTGGGGCTTTTTCTGAAGCTATAGTAAATT-AAAGGTTATAAGTTTAATCACTTCACTAAGAATAGAGATAAC----AACATTAACATGAATATCTAATTTAAGAATTATAATTTTGGTTTATTTCTAATTTTGTAACA
s panTro4.chr4             192869153 320 + 193495092 TTTGTAAATATCAAAACTCATTCTCTGGAAATCAATTGTTGACTTATGAACAAATAAATTAGCTATTATTTACTTGAAGTTTTCTT---AAAAAATAAACTC--GTGCTCAGATCTAAATAGACATTTAGTGTTGAAACTTCTGATTGAGTTTCTAAGTAAGAAAATATTTAGTGTTTTAGTATACA---TTGGGGCTTTTTCTGAAGCTATAGTAAATT-AAAGGTTATAAGTTTAATCACTTCACTAAGAATAGAGATAACAAATAACATTAACATGAATATCTAATTTAAGAATTATAATTTTGGTTTATTTCTAATTTTGTAACA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197974639 319 + 198332218 TTTGTAAATATCAAAACTCATTCTCTGGAAATCAATTGTTGACTTATGAACAAATAAATTAGCTATCATTTACTTGAAGTTTTCTT----AAAAATAAACTC--ATGCTCAGATCTAAATAGACATTTAATGTTGAAACTTCTGATTGAGTTTCTAAGTAAGAAAATATTTAGTGTTTTAGTATACA---TTGGGGCTTTTTCTGAAGCTATAGTAAATT-AAAGGTTATAAGTTTAATCACTTCACTAAGAATAGAGATAACAAATAACATTAACATGAATATCTAATTTAAGAATTATAATTTTGGTTTATTTCTAATTTTGTATCA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113727956 321 + 115148730 TTTGTAAATATCAAAACTCATTCTCTGGAAATCAATTGTTGACTTAGGAACAAATAAATTAGCAATTATTTACTTGAAGTTTTCTA----AAAAAAAAACTCAAGTGCTCAGATCTAAACAGACATTTAATGTTGAAACTTCTGATTGAGTTTCTAAGTAAGCAAATATTTAGTGTTTTAGTATACA---TTGGGGCTTTTTCTGAAGCTATAGTAAATT-AAAGGTTATAAGTTTAATCACTTCACTAAGAATAGAGATAACAAATAACATTAACATGAATATCTAATTTAAGAATTATAATATTGGTTTATTTCTAATTTTGTAACA
i nomLeu3.chr7b            C 0 C 0
s mm10.chr8                 87562646 309 - 129401213 tttttaaaaataaaaAT----------AAAATAAATTGTTGATTCATGAGTGAATTAATTACCAATAATTT-CTTGATTTTTTTTTCTAGAAAGGTAAACTCAAGCATCAAGATTTCAATAGACATTTATTTTTGGAACTCTTAATTGAGTTTATAAATAAAAGAATATTTAGTGTTAGCAAATACAACCTCAGAAGTCACTTTGAAACTACAGTAACTTAAAAAGTTCTAAGCTCAACTGCATTATAATGTATAAAAATACCAAATAATAT---------TGTCTAGTTTAATAATCATAGTTCTGAATTGTTACTAATTTTGTGACA
i mm10.chr8                I 6417 I 806
e canFam3.chr16             17851674 3589 -  59632846 I
e calJac3.chr3             190417972   4 - 190850796 I
e chlSab2.chr7             135312158 800 + 135778131 I
e papAnu2.chr5             178373074 412 + 178775436 I
e macFas5.chr5             188949055 411 + 189454096 I
e rheMac3.chr5             183565714 814 + 184069350 I

a score=14252.000000
s hg38.chr4_KI270925v1_alt    174209 30 +    555799 GAAAGTTAGCCTAAAAATAGTAATTAGTCT
s panTro4.chr4             192869473 30 + 193495092 GAAAGTTATCCTAAAAATAGTAATTAGTCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197974958 30 + 198332218 GAAAGATATCCTAAAAATAGTAATTATTTT
i ponAbe2.chr4             C 0 I 21
s nomLeu3.chr7b            113728277 30 + 115148730 GAAAGATATCCTAAAAATAGTAATTAGTCT
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87562955 806 - 129401213 I
e canFam3.chr16             17851674 3589 -  59632846 I
e calJac3.chr3             190417972  4 - 190850796 I
e chlSab2.chr7             135312158 800 + 135778131 I
e papAnu2.chr5             178373074 412 + 178775436 I
e macFas5.chr5             188949055 411 + 189454096 I
e rheMac3.chr5             183565714 814 + 184069350 I

a score=3558.000000
s hg38.chr4_KI270925v1_alt    174239 19 +    555799 AGTTG-TTTTTTTTCCTGAA
s panTro4.chr4             192869503 20 + 193495092 AGTTGTTTTTTTTTCCTGAA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113728307 18 + 115148730 AATTG--TTTTTTTCCTGAA
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87562955 806 - 129401213 I
e canFam3.chr16             17851674 3589 -  59632846 I
e calJac3.chr3             190417972  4 - 190850796 I
e chlSab2.chr7             135312158 800 + 135778131 I
e papAnu2.chr5             178373074 412 + 178775436 I
e macFas5.chr5             188949055 411 + 189454096 I
e rheMac3.chr5             183565714 814 + 184069350 I
e ponAbe2.chr4             197974988 21 + 198332218 I

a score=87903.000000
s hg38.chr4_KI270925v1_alt    174258 163 +    555799 GAAGCATTGTAGTTCTGTGAGTTCAGTTATATTGGTAGTAGATGCCAGCAGGTAAAATATGATGTATCAAAGTCCTTAGGTTAGTTGATCATATGGAGCTCTTTTTCTCTTTATTATGTTTTAGTTCTTAAATATCACCACATATCAGCTCAAATGCAAGAGT
s panTro4.chr4             192869523 163 + 193495092 GAAGCATTGTAGTTCTGTGAGTTCAGTTATATTGGTAGTAGATGCCAGCAGGTAAAATATGATGTATCAAAGTCCTTAGGTTAGTTGATCATATGGAGCTCTTTTTCTCTTTATTATGTTTTAGTTCCTAAATATCACCACATATCAGCTCAAATGCAAGAGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197975009 163 + 198332218 GAAGCATTGTAGTTCTGTGAGTTCAGTTATATTGGTAGTAGATGCCAACAGGTAAAATATGATGTATCAAAGTCCTTAGGTTAGTTGATCATATGGAGCTCTTTTTCTCTTTACTATGTTTTAGTTCTTAAATATCACCACATATCAGCTCAAATGCAACAGT
i ponAbe2.chr4             I 21 C 0
s nomLeu3.chr7b            113728325 163 + 115148730 GAAGCATTGTAGTTCTGTGAGTTCAGTTATATTGGGAGTAGATGCCAGAAGGTAAAATATGATGTATCAAAGTCCTTAGGTTAGTTGATCATATGGAGCTCTTTTTCTCTTTATTATGTTTTAGTTCTTAAATACCACCACATATCAGCTCAAATTCAAGAGT
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87562955 806 - 129401213 I
e canFam3.chr16             17851674 3589 -  59632846 I
e calJac3.chr3             190417972   4 - 190850796 I
e chlSab2.chr7             135312158 800 + 135778131 I
e papAnu2.chr5             178373074 412 + 178775436 I
e macFas5.chr5             188949055 411 + 189454096 I
e rheMac3.chr5             183565714 814 + 184069350 I

a score=1820.000000
s hg38.chr4_KI270925v1_alt    174421 2 +    555799 TT
s panTro4.chr4             192869686 2 + 193495092 TT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197975172 2 + 198332218 TT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113728488 2 + 115148730 TT
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190417976 2 - 190850796 TT
i calJac3.chr3             I 4 C 0
e mm10.chr8                 87562955 806 - 129401213 I
e canFam3.chr16             17851674 3589 -  59632846 I
e chlSab2.chr7             135312158 800 + 135778131 I
e papAnu2.chr5             178373074 412 + 178775436 I
e macFas5.chr5             188949055 411 + 189454096 I
e rheMac3.chr5             183565714 814 + 184069350 I

a score=174137.000000
s hg38.chr4_KI270925v1_alt    174423 185 +    555799 GTACGTAGAAATGCTAATTCAACATCATGCTCTAATATACCCATTACAGTTAATGTTCCTTTAAATAGTAAAAGTGAGGTGCA---TTTTTTAACAGAAACCTTAACATGGCATAGGAGATTATCACAATCTCTT-ATATTCCACTTTTCACTCACATTCAAAATTTTGGAAACAATGTTCATAAATga
s panTro4.chr4             192869688 185 + 193495092 GTACGTAGAAATGCTAATTCAACATCATGCTCTAATATACCCATTACAGTTAATGTTCCTTTAAATAGTAAAAGTGAGGTGCA---TTTTTAAACAGAAACCTTAACATGGCATAGGAGATTATCACAATCTCTT-ATATTCCACTTTTCACTCACATTCAAAATTTTGGAAACAATGTTCATAAATGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197975174 185 + 198332218 GTATGTAGAAATGCTAATTCAACATCATGCTCTAATATACCCATTACAGTTAATGTTCCTTTAAATAGTAAAAGTGAGGTGCA---TGTTTTAACAGAAACCTTAACATGGCATAGGAGATTATCACAATCTCTT-ATATTCCACTTTTCACTCACATTCAAAATTTTGGAAACAATGTTCATAAATGA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113728490 187 + 115148730 GTATGTAGAAATGCTAATTCAACATCATGCTCTAATATACCCATTTCAGTTAATGTTCCTTTAAATAGTAAAAGTGAGGTGCAT-TTTTTTTAATAGAAACCTTAACATGGCATAGGAGATTATCAAAATCTCAT-ATATTCCACTTTTCACTCACATTCAAAATTTTGGAAACAATGTTCATAAATga
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190417978 183 - 190850796 GTATGTAGAAATGCTAATTCAACATCATGCTCTAATATTCCCATTTCAGTTAATGTTCCTTTAAAGAGTAAAAGTGAGGGACA---TTTTTTAACAGAAATCTTAACGCGGCCTATGAGATTATCACAATCTCTT-TTAATCCACTTTTCGCTCACATTCAAAATTTTGAAAACAATGTTCATAAAT--
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87563761 182 - 129401213 GTGTGTAGAAACACACAATCTTTGTGAGTATCTGCTACTCTCACT-CACTTTATTTTCTTTTAAGTATTAAAG--GAGATACAGATTTTTTTAAGAGAAAATTTAACACAATAGAAGAGATGACCTCAACCTCTTAATATATTACCTTTAACTCACATAGCCCACTTTG----CAATCTACATAAATGA
i mm10.chr8                I 806 I 257
e canFam3.chr16             17851674 3589 -  59632846 I
e chlSab2.chr7             135312158 800 + 135778131 I
e papAnu2.chr5             178373074 412 + 178775436 I
e macFas5.chr5             188949055 411 + 189454096 I
e rheMac3.chr5             183565714 814 + 184069350 I

a score=1033769.000000
s hg38.chr4_KI270925v1_alt    174608 1320 +    555799  
s panTro4.chr4             192869873 1317 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197975359 1313 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113728677 1300 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190418161 1314 - 190850796  
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87563943  257 - 129401213 I
e canFam3.chr16             17851674 3589 -  59632846 I
e chlSab2.chr7             135312158  800 + 135778131 I
e papAnu2.chr5             178373074  412 + 178775436 I
e macFas5.chr5             188949055  411 + 189454096 I
e rheMac3.chr5             183565714  814 + 184069350 I

a score=380886.000000
s hg38.chr4_KI270925v1_alt    175928 394 +    555799 GATTATTTGAGATTATAA-AAAAGTCATGAGGTTAAGTGGAAAGAA-GAAATAATTCCATAGATGACACGTCTGGATTTAAAAATCTGTGCTCCTGCATGGAATAAAAAATTTG--TTTCAATTTGGAAGTAAAATTAAAATTTGATAAAATGGGTTTGAATTTGGACTCCAGATTAATATTTTCAATAGTTATTCACATTAATTATCTCTGTTTAGTCATTAAAAGTAATAATTCCTCCTCAAATCTAATTTGTAAATTATTGTAATTCGTCTTTGGAG-----AAAAAAATCTTCCCTGCAAGTGGGTAAGGGTCTCCCACATGTGAAATTCTCAAGCAGTTCATAACTAAAAGGATGAGGTGGGGGAACCTATTTGAGAGCTTTCTCACAAAAGTGCTCT
s panTro4.chr4             192871190 394 + 193495092 GATTATTTGAGATTATAA-AAAAGTCATGAGGTTAAGTGGAAAGAA-GAAATAATTCCATAGATGACACGTCTGGATTTAAAAATCTTTGCTCCTGCATGGAATAAAAAATTTG--TTTCAATTTGGAAGTAAAATTAAAATTTGATAAAATGGGTTTGAATTTGGACTCCAGATTAATATTTTCAATAGTTATTCACATTAATTATCTCTGTTTAGTCATTAAAAGTAATAATTCCTCCTCAAATCTAATTTGTAAATTATTGTAATTCGTCTTTGGAG-----AAAAAAATCTTCCCTACAAGTGGGTAAGGGTCTCCCACATGTGAAATTCTCAAGCAGTTTATAACTAAAAGGATGAGGTGGGGGCACCTATTTGAGAACTTTCTCACAAAAGTACTCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197976672 394 + 198332218 GATTATTTGAGAATATAA-GAAAGTCATGAGATTAAGTGGAAAGAA-GAAATAATTCCATAGATGACACATCTGGATTTAAAAATCTGTGCTCCTGCATGGAATAAAAAATTTG--TTTCGATTTGGAAGTAAAATTAAAATTTGATAAAATGGGTTTGAATTTGGACTCCAGATTAATATTTTCAATAGTTATTCACATTAATTATCTCTGTTTAGTCATTAAAAGTAATAATTCCTCCTCACATCTAATTTGTAAATTATTGTAATTCATCTTTGGAG-----AAAAAAATCTTCCCTACAAGTGGGTAACAGTCTCCCACATGTGAAATTCTCAAGCAGTTTATAACTAAAAGGATGAGGTGGGGGCACCTATTTGAGAGCTTTCTTACAAAAGTGCTCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113729977 392 + 115148730 GATTATTTGAGAATATAA--AAAGTCATGAGATTAAGTGGAAAGAA-GAAATAATTCCATAGATGACACATCTGAATTTAAAAATCTGTGCTCCTGCATGGATTGAAAAATTTG--CTTCAATTTGGAAGTAAAATTAAAATTTGATAAAATGGGTTTGAATTTGGACTCCTGATTAATATTTTCAATAGTCATTCATATTAATTATCTCTGTTTAGTCATTAAAA-TAATAGTTCCTCCTCACACCTAATTTGTAAGTTATTGTAATTAGTCTTTGGAG-----AAAAAATTCTTCCCTACAAGTGGGTAAGGGTCTCCCACATGTGAAATTCTCAAGCAGTTTATAACTAAAAGGATGAGGTGGGGGCATCTATTTGAGAGCTTTCTCACACAAGTGCTCT
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190419475 402 - 190850796 gattatttaagaatataaaaaaaGTCATGAGACTAAGTGGGAAGAA-AAAATAATTCCACAGATAACACATCTGAATTTAAAAATCTGTGCTCTTGTATGGAATAAGGAATTTGCCTTTAGATTTGGAAGTAAAATTAAAATTTGATTAAATGGGATTGAATTTGGACTCCTGACTAATATTTTCAGTAGTCATTGACATTAATTCTCTCTGTTTAGTCATTAAAAGTAATAATCTTTCCCTGCACCTAATTTGAAACCTATTTTAATTAGTCTTTGCAGAAAAAAAAAAAATCTTCCATGCAGGTGGGTAAGGGTCTCCCACATGTGAAATTCTCAAGCAGTTTATAACTAAAAGGGTGAGGTGAGGGCACCTATTCAAGAGGTTTCTCACACAAGTGCTCT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17855263 381 -  59632846 gaTTTTTTTAAATTTTAA----AGTCATCAGATTATGTGGAAAAAAGGAAATAGTTCCACAAATAACACATTTGG-CTTCACATTCTGTATTTCTGCGTGGGATGAAGGATTTGCCGTTCACTGAG------------AAGTTTTATAAGACAGTCTTGCATTTAGACTC----TTAATTCTTTCAATAGTTATTCAATTAAATTCCTTCTGTTCAGTTATTAAGAGTAATAATCTCTCTATACACATAATTTCTAAATCATTTAAATTATTTTTTTGGAGAAAAAAAAGAAACTTCCAGAAAAGT-GGTAAGGGATTCCCATATCTGAAAGTCTAAAATATTTTCTAAACGGAAGAGTGAAGCAAGTTCCTTCATTCAAGATCCTTCTTCTTCAAGTGTTCT
i canFam3.chr16            I 3589 I 1
e mm10.chr8                 87563943 257 - 129401213 I
e chlSab2.chr7             135312158 800 + 135778131 I
e papAnu2.chr5             178373074 412 + 178775436 I
e macFas5.chr5             188949055 411 + 189454096 I
e rheMac3.chr5             183565714 814 + 184069350 I

a score=104135.000000
s hg38.chr4_KI270925v1_alt    176322 105 +    555799 GTTCTCA-CAGCTGCTAAACATCCTGACGGAAATAATCTACAACAGGGACACGTAAACATTATATTCAATGTAAAATATAATACAAG-GGGGTCTATTTAGGAAA-TT
s panTro4.chr4             192871584 105 + 193495092 GTTCTCA-CAGCTGCTTAACATCCTGACCGAAATAATCTACAATATGGACACGTAAACATTATATTCAATGTAAAATATAATATAAG-AGGGTCTATTTAGGAAA-TT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197977066 105 + 198332218 GTTCTCA-CAGCTGCTAAACATCCTGACTGAAATAATCTACAATATGGACACATAAACATTACATTCAATGTAAAATATAATATAAA-GGGGTCTATTTAGGAAA-TT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113730369 105 + 115148730 CTTCTCA-CAGCTGCTGGACATCCTGACTGAAATAATCTACAATATGGACACGTAAACATTATATTCAATTTAAAATATAACATAAG-GAAGTCTATTTAGGAAA-TT
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190419877 101 - 190850796 GTTACTA-CAGCTGCTAAACGTCCTCACTGAAACAATCTACAATACGGACATGCAAACATTATACGCAATTTAAAATAT-----ACA-GAGGGTTATCTAGGAAATTT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87564200 106 - 129401213 GTGCTCATCAGCTGCTAACAATCCTGACTGAAAGCATGTTCAGGATGGACACAC-AATGTCAAAATCAACTTAAACTGAAATTTAAGAGGAGTCAGGTTAGAAAA-TA
i mm10.chr8                I 257 C 0
s canFam3.chr16             17855645 100 -  59632846 ATTATCA-TGGCTACTAACCAAGCTAACCCAAATAATCCACAGAATAGACa----aattttataaataatttaaaatgtaa-ataaa-GTGATCTATTTAGAAAA-CT
i canFam3.chr16            I 1 I 12
e chlSab2.chr7             135312158 800 + 135778131 I
e papAnu2.chr5             178373074 412 + 178775436 I
e macFas5.chr5             188949055 411 + 189454096 I
e rheMac3.chr5             183565714 814 + 184069350 I

a score=5605.000000
s hg38.chr4_KI270925v1_alt    176427 5 +    555799 GAAAA
s panTro4.chr4             192871689 5 + 193495092 AAAAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197977171 5 + 198332218 AAAAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113730474 5 + 115148730 AAAAA
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190419978 5 - 190850796 AAAAA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87564306 5 - 129401213 AAAGA
i mm10.chr8                C 0 I 10
e canFam3.chr16             17855745 12 -  59632846 I
e chlSab2.chr7             135312158 800 + 135778131 I
e papAnu2.chr5             178373074 412 + 178775436 I
e macFas5.chr5             188949055 411 + 189454096 I
e rheMac3.chr5             183565714 814 + 184069350 I

a score=1570080.000000
s hg38.chr4_KI270925v1_alt    176432 2042 +    555799  
s panTro4.chr4             192871694 2027 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197977176 2042 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113730479 2024 + 115148730  
i nomLeu3.chr7b            C 0 I 1373
s calJac3.chr3             190419983 1943 - 190850796  
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87564311   10 - 129401213 I
e canFam3.chr16             17855745   12 -  59632846 I
e chlSab2.chr7             135312158  800 + 135778131 I
e papAnu2.chr5             178373074  412 + 178775436 I
e macFas5.chr5             188949055  411 + 189454096 I
e rheMac3.chr5             183565714  814 + 184069350 I

a score=9186.000000
s hg38.chr4_KI270925v1_alt    178474 21 +    555799 aataaaagagaaattcaaact
s panTro4.chr4             192873721 21 + 193495092 aaaaaaagagaaattcaaact
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197979218 21 + 198332218 aaaaaaagagaaattcaaact
i ponAbe2.chr4             C 0 C 0
s calJac3.chr3             190421926 20 - 190850796 -aaagaaaagaaattcAggct
i calJac3.chr3             C 0 I 1327
e mm10.chr8                 87564311 10 - 129401213 I
e canFam3.chr16             17855745 12 -  59632846 I
e chlSab2.chr7             135312158 800 + 135778131 I
e papAnu2.chr5             178373074 412 + 178775436 I
e macFas5.chr5             188949055 411 + 189454096 I
e rheMac3.chr5             183565714 814 + 184069350 I
e nomLeu3.chr7b            113732503 1373 + 115148730 I

a score=280196.000000
s hg38.chr4_KI270925v1_alt    178495 1045 +    555799  
s panTro4.chr4             192873742 1048 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197979239 1049 + 198332218  
i ponAbe2.chr4             C 0 C 0
e mm10.chr8                 87564311   10 - 129401213 I
e canFam3.chr16             17855745   12 -  59632846 I
e calJac3.chr3             190421946 1327 - 190850796 I
e chlSab2.chr7             135312158  800 + 135778131 I
e papAnu2.chr5             178373074  412 + 178775436 I
e macFas5.chr5             188949055  411 + 189454096 I
e rheMac3.chr5             183565714  814 + 184069350 I
e nomLeu3.chr7b            113732503 1373 + 115148730 I

a score=46878.000000
s hg38.chr4_KI270925v1_alt    179540 584 +    555799  
s panTro4.chr4             192874790 584 + 193495092  
i panTro4.chr4             C 0 C 0
e mm10.chr8                 87564311  10 - 129401213 I
e canFam3.chr16             17855745  12 -  59632846 I
e calJac3.chr3             190421946 1327 - 190850796 I
e chlSab2.chr7             135312158 800 + 135778131 I
e papAnu2.chr5             178373074 412 + 178775436 I
e macFas5.chr5             188949055 411 + 189454096 I
e rheMac3.chr5             183565714 814 + 184069350 I
e nomLeu3.chr7b            113732503 1373 + 115148730 I
e ponAbe2.chr4             197980288   0 + 198332218 C

a score=18720.000000
s hg38.chr4_KI270925v1_alt    180124 115 +    555799 CAAAATGCACCAAGCCGCAGGCATCATACAGTCCGACTTCAAAATGCACCAAGCCGCAGGCATCATACAGTCCGACTTCAAAATGCACCAAGCCGCAGGCATCATACAGTCCGAC
s panTro4.chr4             192875374 115 + 193495092 CAAAATGCACCAAGCCAGAGGCATCATATAACCCGACTTCAACATGCACCAAGCCGGAGGCATCATATAACCCGACTTcaaaatgcaccaagccggaggcatcatataacccgac
i panTro4.chr4             C 0 I 2410
s nomLeu3.chr7b            113733876  97 + 115148730 caaaatgcaccaagctggaggcgtcatataacctgacttcaaaatggtacaa---------atcatataacctgactttgaaatggtacaa---------atcatataacccgac
i nomLeu3.chr7b            I 1373 C 0
e mm10.chr8                 87564311  10 - 129401213 I
e canFam3.chr16             17855745  12 -  59632846 I
e calJac3.chr3             190421946 1327 - 190850796 I
e chlSab2.chr7             135312158 800 + 135778131 I
e papAnu2.chr5             178373074 412 + 178775436 I
e macFas5.chr5             188949055 411 + 189454096 I
e rheMac3.chr5             183565714 814 + 184069350 I
e ponAbe2.chr4             197980288   0 + 198332218 C

a score=5761.000000
s hg38.chr4_KI270925v1_alt    180239 41 +    555799 TTCAAAATGCACCAAGCCGCAGGCATCATATAACCCAACTT
s panTro4.chr4             192877899 41 + 193495092 TTcaaaatgcaccaagccggaggcatcatataacccgactt
i panTro4.chr4             I 2410 C 0
s nomLeu3.chr7b            113733973 32 + 115148730 tttgaaatagtacaa---------atcatataacctgactt
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87564311 10 - 129401213 I
e canFam3.chr16             17855745 12 -  59632846 I
e calJac3.chr3             190421946 1327 - 190850796 I
e chlSab2.chr7             135312158 800 + 135778131 I
e papAnu2.chr5             178373074 412 + 178775436 I
e macFas5.chr5             188949055 411 + 189454096 I
e rheMac3.chr5             183565714 814 + 184069350 I
e ponAbe2.chr4             197980288  0 + 198332218 C

a score=484324.000000
s hg38.chr4_KI270925v1_alt    180280 649 +    555799  
s panTro4.chr4             192877940 649 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197980288 655 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113734005 641 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190423273 639 - 190850796  
i calJac3.chr3             I 1327 C 0
e mm10.chr8                 87564311  10 - 129401213 I
e canFam3.chr16             17855745  12 -  59632846 I
e chlSab2.chr7             135312158 800 + 135778131 I
e papAnu2.chr5             178373074 412 + 178775436 I
e macFas5.chr5             188949055 411 + 189454096 I
e rheMac3.chr5             183565714 814 + 184069350 I

a score=1500.000000
s hg38.chr4_KI270925v1_alt    180929 1 +    555799 g
s panTro4.chr4             192878589 1 + 193495092 g
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197980943 1 + 198332218 g
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113734646 1 + 115148730 g
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188949466 1 + 189454096 g
i macFas5.chr5             I 411 C 0
s calJac3.chr3             190423912 1 - 190850796 g
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87564311 10 - 129401213 I
e canFam3.chr16             17855745 12 -  59632846 I
e chlSab2.chr7             135312158 800 + 135778131 I
e papAnu2.chr5             178373074 412 + 178775436 I
e rheMac3.chr5             183565714 814 + 184069350 I

a score=6707.000000
s hg38.chr4_KI270925v1_alt    180930 7 +    555799 ttcatca
s panTro4.chr4             192878590 7 + 193495092 ttcatca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197980944 7 + 198332218 ctcatca
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113734647 7 + 115148730 ctcatca
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188949467 7 + 189454096 tctatcc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178373486 7 + 178775436 tctatca
i papAnu2.chr5             I 412 C 0
s calJac3.chr3             190423913 7 - 190850796 ctaatcc
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87564311 10 - 129401213 I
e canFam3.chr16             17855745 12 -  59632846 I
e chlSab2.chr7             135312158 800 + 135778131 I
e rheMac3.chr5             183565714 814 + 184069350 I

a score=154660.000000
s hg38.chr4_KI270925v1_alt    180937 68 +    555799 ttagggaaatgtcattcacagctacaatgagatcccatctcacagtagtcagaatggctgttattaaa
s panTro4.chr4             192878597 68 + 193495092 ttagggaaatgtcattcacagctacaacgagatcccatctcacagtagtcagaatggctgttattaaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197980951 68 + 198332218 ttagggaaatgtcattcacagctacaatgagatcccatctcacagtagtcagaatggctattattaaa
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113734654 68 + 115148730 ttaaggaaatgtcattcacagctacaatgagatcccatctcacactagtcagaatggctattactaaa
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188949474 68 + 189454096 ttagggaaatgtcatccaaagctacaaagagatcccatcttacactagtcagaatggctactattaaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178373493 68 + 178775436 ttagggaaatgtcatccaaagctacaatgagatcccatctcacactagtcagaatgactattattaaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135312958 68 + 135778131 ttagggaaatgtcatccaaagctacaaagagatcccatctcacactagtcagaatggctactattaaa
i chlSab2.chr7             I 800 C 0
s calJac3.chr3             190423920 68 - 190850796 ttagggaaatgtaattcacaactgcaacgagataccatctcacactagtcagaatggctatcgttaaa
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87564311 10 - 129401213 I
e canFam3.chr16             17855745 12 -  59632846 I
e rheMac3.chr5             183565714 814 + 184069350 I

a score=2062035.000000
s hg38.chr4_KI270925v1_alt    181005 733 +    555799  
s panTro4.chr4             192878665 733 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197981019 731 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113734722 733 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183566528 737 + 184069350  
i rheMac3.chr5             I 814 C 0
s macFas5.chr5             188949542 737 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178373561 729 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135313026 732 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190423988 726 - 190850796  
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87564311  10 - 129401213 I
e canFam3.chr16             17855745  12 -  59632846 I

a score=111187.000000
s hg38.chr4_KI270925v1_alt    181738 41 +    555799 AAAATGGAAACTTAAAAATAATGCTATTCAGAAATCTCAAT
s panTro4.chr4             192879398 41 + 193495092 AAAATGGAAACTTAAAAATAATGCTATTCAGAAATCTCAAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197981750 41 + 198332218 AAAATGGAAACTTAAAAATAATGCTATTCAGAAATTTCAGT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113735455 41 + 115148730 AAAACGGAAACTTAAAAATAGTGCTCTTCAGAAATTTCCAT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183567265 40 + 184069350 AAAACAGAAACTTAAAAATAATGCTATTCAGAAA-TTCAAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188950279 40 + 189454096 AAAACAGAAACTTAAAAATAATGCTATTCAGAAA-TTCAAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178374290 41 + 178775436 aaaacagaaacttaaaaataatgctattcagaaatttcaaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135313758 41 + 135778131 AAAACAGAAACTTAAAAATAATGCTATTCAGAAATTTCAAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190424714 41 - 190850796 AAAACAGAAACTTAAAAAAAATGCTATTCAGAAATTTCAAA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17855757 31 -  59632846 AAAATAG----TTTAAAGTTAT-CTATTTAGGAA----AA-
i canFam3.chr16            I 12 C 0
e mm10.chr8                 87564311 10 - 129401213 I

a score=1605219.000000
s hg38.chr4_KI270925v1_alt    181779 461 +    555799  
s panTro4.chr4             192879439 461 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197981791 465 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113735496 460 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183567305 461 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188950319 461 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178374331 461 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135313799 460 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190424755 462 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87564321 551 - 129401213  
i mm10.chr8                I 10 I 702
s canFam3.chr16             17855788 532 -  59632846  
i canFam3.chr16            C 0 C 0

a score=224086.000000
s hg38.chr4_KI270925v1_alt    182240 66 +    555799 TAAAAGTT-TCAAATAATTTGGAAAGATGAACTGGAACATCCAATGAAAA-TGTTAGGTGCTGCTCTC
s panTro4.chr4             192879900 66 + 193495092 TAAAAGTT-TCAAATAATGTGGAAAGATGAACTGGAACATCCAATGAAAA-TGTTAGGTGCTGCTCTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197982256 66 + 198332218 TAAAAGTT-TCAAATAATGTGGAAAGATGAACTGGAACATCCAATGAAAA-TGTTAGGTGCTGCTCTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113735956 66 + 115148730 TAAAAGTT-TCAAATAATGTGGAAAGATGAACTAGAATATCCAATGAAAA-TGTTAGGTGCTGCTCTC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183567766 66 + 184069350 TAAAAGTT-CCACATAATGTGGAAAGATGAACTGGAAAATCCAATGAAAA-TGTTAGGTGCTGCTCTC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188950780 66 + 189454096 TAAAAGTT-CCACATAATGTGGAAAGATGAACTGGAAAATCCAATGAAAA-TGTTAGGTGCTGCTCTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178374792 66 + 178775436 taaaagtt-ccacATAATGTGGAAAGATGAACTGGAAAATCCAATGAAAA-TGTTAGGTGCtgctctc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135314259 66 + 135778131 TAAAAGTT-TCACATAATGTGGAAAGATGAACTGGAAAATCCAATGAAAA-TATTAGGTGCTGCTCTC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190425217 65 - 190850796 T-AAAGTT-TCAAATAATGTGGAAAGATGAACTGGAAGATCTAATGAAAA-TGTTAGGTGCTGCTCTC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17856320 67 -  59632846 -AAAAATTACCAAACAGTTTGAGAAGAAACACTGGAACATTTAATAAAAACTTTTGGTTGCTGCTCTg
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87564872 702 - 129401213 I

a score=2280924.000000
s hg38.chr4_KI270925v1_alt    182306 727 +    555799  
s panTro4.chr4             192879966 719 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197982322 725 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113736022 727 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183567832 751 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188950846 751 + 189454096  
i macFas5.chr5             C 0 I 146
s papAnu2.chr5             178374858 752 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135314325 760 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190425282 673 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87565574 655 - 129401213  
i mm10.chr8                I 702 C 0
s canFam3.chr16             17856387 755 -  59632846  
i canFam3.chr16            C 0 C 0

a score=227626.000000
s hg38.chr4_KI270925v1_alt    183033 64 +    555799 GTAAATGCAGACCTGCATTTGTTGAATGTGAAAGTCTTTGTCTCATTAG-TAACTACACTCACCA
s panTro4.chr4             192880685 64 + 193495092 gtaaatgcAGACCTGCATTTGTTGAATGTGAAAGTCTTTGTCTCATTAG-TAACTACACTCACCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197983047 64 + 198332218 gtaaatgcAGACACGCATTTGTTGAATGTGAAAGTCTTTGTCTCATTAG-TAACTATACTCACCA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113736749 65 + 115148730 gtaaatgcAGACATGCATTTGTTGAATGTGAAAGTCTTTGTCTCATTAGTTAACTACACTCACCA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183568583 64 + 184069350 GTAAATGCAGACATGCATTTGTTGAATGTGAAAGTCTTCGTCTCGTTAG-TGACCACACTCACCA
i rheMac3.chr5             C 0 I 314
s macFas5.chr5             188951743 64 + 189454096 GTAAATGCAGACATGCATTTGTTGAATGTGAAAGTCTTCGTCTCGTTAG-TGACCACACTCACCA
i macFas5.chr5             I 146 C 0
s papAnu2.chr5             178375610 64 + 178775436 GTAAATGCAGACGTGCATTTGTTGAATGTGAAAGTCTTTGTCTCATTAG-TGACCACACTCACCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135315085 64 + 135778131 GTAAATGCAGACGTGCGTTTGTTGAATGTGAAAGTCTTTGTCTCATTAG-TGACCACATTCACCA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190425955 64 - 190850796 GGAAATGCAGACACACATCTGCTGAATGTGAGTGTCTTTGTCACATTAG-TAATTACACTCACCA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87566229 63 - 129401213 GTGAACGTTTGTAAATCTTTGTTGAATATGAATGT-TTGGCACCCATAA-TAACTATGTTCACTA
i mm10.chr8                C 0 C 0
s canFam3.chr16             17857142 64 -  59632846 ATAAATGCTTATTAATGTTTGTTGAATTTGAGAGTCTTGATCTCACTAG-TAACTACATTAATTA
i canFam3.chr16            C 0 C 0

a score=20658.000000
s hg38.chr4_KI270925v1_alt    183097 21 +    555799 TATATCAAAACG-GGGGGGTAA
s panTro4.chr4             192880749 20 + 193495092 TACATCAAAAC--TGGGGGTAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197983111 21 + 198332218 TAAACCAAAACT-GGGCGGTAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113736814 22 + 115148730 GATACCAAAACTAGGGAGAAAA
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188951807 21 + 189454096 CACACCAAAAGT-GTGGGGAAA
i macFas5.chr5             C 0 I 1
s papAnu2.chr5             178375674 21 + 178775436 TACACCAaaagt-gtggggaaa
i papAnu2.chr5             C 0 I 1
s chlSab2.chr7             135315149 21 + 135778131 TATACCAAAAGT-GTGGGGAAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190426019 19 - 190850796 CATACCAAAACT-GGGGGAA--
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87566292 17 - 129401213 TATACTGAAGAC-AGTAT----
i mm10.chr8                C 0 C 0
s canFam3.chr16             17857206 21 -  59632846 TATGCTAAAACA-AAGGGAAAA
i canFam3.chr16            C 0 C 0
e rheMac3.chr5             183568647 314 + 184069350 I

a score=591324.000000
s hg38.chr4_KI270925v1_alt    183118 191 +    555799 AAAGAATCATTTCTTATGAAAAATAGATTAGCTGCTCTTAGAGGCAAGGACAGGAAAGGTCTTTAGTTATTTTAGATTTTAAAGT----AAAACTGGCCTTAAAA--AGAACGTGGAATTAATTGTTGTTATTCCTGCTGCTG------TTGTTTGGAGGGAGGAAATTACATTTATGGTCCAAAACTGAGAACCAAAGCCAC
s panTro4.chr4             192880769 191 + 193495092 AAAGAATCATTTCTTATGAAAAATAGATTAGCTGCTCTTAGAGGCAAGGACAGGAAAGGTCTTTAGttattttaaattttaaaat----aaaaCTGGCCTTAAAA--AGCACGTGGAATTAATTGTTGTTATTCCTGCTGCTG------TTGTTTGGAGGGAGGAAATTACATTTATGGTCCAAAACTGAGAACCAAAGCCAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197983132 188 + 198332218 AAAGAATCATTTCTTATTAAAAATAGATTAGCTGCTCTTAGAGGCAAGGACAGGAAAGGTCTTTAGTTATTTTAGATTTTAAAAT----AAAACTGGCCTTAAAA--AGAACATGGAATTAA---TTGTTATTCCTGCTGTTG------TTGTTTGAAGGGAGGAAATTACATTTATGGTCCAAAACTGAGAACCAAAGCCAC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113736836 191 + 115148730 AAGGAATCATTTCTTATTAAAAATAGATTAGCTGCTCTTAGAGGCAAGGACAGGAAATGTCTTTAGTTATTTTAGACTTTAAAAC----AAAACTGGCCCTAAAA--AGAACATGGAATTAATTGTTGTTATTCCTGCTGTTG------TTGTTTGGAGGGAGGAAATTACATTTATGGTCCAAAACTGAGAACCAAAGCCAC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183568961 189 + 184069350 AAAGAATCACTTCTTATTAAAAAGAGATTAGCTGCTCTTAGAGGCAAGGACA-GAAAGACCTTTAGTTATTTTAGATTTTAAAAC----AAAACTGGCCTTTAAA--AAAACGTGGAATTAATTGTTGTT-TTATTCCTGCTA------TTGTTTGGAGGGAGGAAAGTACATTTATGGTCCAAAACTGAGAACCAAAGCCAC
i rheMac3.chr5             I 314 C 0
s macFas5.chr5             188951829 190 + 189454096 AAAGAATCACTTCTTATTAAAAAGAGATTAGCTGCTCTTAGAGGCAAGGACAGGAAAGACCTTTAGTTATTTTAGATTTTAAAAC----AAAACTGGCCTTTAAA--AAAACGTGGAATTAATTGTTGTT-TTATTCCTGCTA------TTGTTTGGAGGGAGGAAAGTACATTTATGGTCCAAAACTGAGAACCAAAGCCAC
i macFas5.chr5             I 1 C 0
s papAnu2.chr5             178375696 180 + 178775436 aaagaatcacttcttattaaaaatagattagcTGCTCTTAGAGGCAAGGA----------CTTTagttattttagattttaaaac----aaaactggcCTTTaaa--aaaaCGTGGAATTAATTGTTGTT-TTATTCCTGCTA------TTGTTTGGAGGGAGGAAAGTACATTTATGGTCCAAAACTGAGAACCAAAGCCAC
i papAnu2.chr5             I 1 C 0
s chlSab2.chr7             135315170 179 + 135778131 AAAGAATCACTTCTTATTAAAAATAGATTAGCTGCTCTTAGAGGCAAGGA----------CTTTAGTTATTTTAGATTTTAAAAC----AAAACTGGCCATT-AA--AAAACATGGAATTAATTGTTGTT-TTATTCCTGCTA------TTGTTTGGAGGGAGGAAAGTACATTTATGGTCCAAAACTGAGAACCAAAGCCAC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190426038 188 - 190850796 AAAGACTCATTTCTTATTAAAAACAGATTAGCTGCTCTTAGAGGAAAGTACAGGAAAGGCCTTTAGTTATTTTACGTGTTAAAAC----AAGACTGGCCTTAAAA--AGAGCAGGGAATTAATTGTCGTTATTGCCTCTGTTG------TTGCTTGAAGGCAGGAAGTTACACGTACGGTCTGAAACCGGTG---AAAGCCAC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87566309 192 - 129401213 AGAGGCTTACATCTTCTT-AATGTAGATTAGCAGTTTTTAAAGACAAAGA--------GCCTTTAGTTCTTTCAGATATAAAAGCAAAGAAAGATGGCTTTAAGG--GGAATATTAACTTAAGTGCTGTTCCTGTTACTGTTGAAATTAGTGTTTAGAACAGTTTAATTACAGCTATGATTCAAAACTGAGAACTTAAGTTAC
i mm10.chr8                C 0 I 1655
s canFam3.chr16             17857227 170 -  59632846 -------------TTATTAAAAATAGATTAGCAGTTTTTA-----AAGTATAGGAGAGATCTTTAGGTCTTTTAGATTTTGGAAC----AAAAATTGATGTAAAAGTAGGCCATGGAATTATTAGTTGCCATTGTCATTGTTG----------TTTGTGAGGGGAACATGCAGCCACAGCTTCAAACCAA-AACCAGAGTTAC
i canFam3.chr16            C 0 C 0

a score=972769.000000
s hg38.chr4_KI270925v1_alt    183309 340 +    555799 ----TGATGACCACACAT-CCAAGTTTGCATTCTGCCAACAATTTGCCCACAGCTGGGGCCAGAGTTGGCCAGAAACAGT---AAGTTATGGAGAAGGGCCAGATTAGATTAACCCCCAAAGCAATACCACTTATCACCAATAAAGATGAGGAGATGAGCTTGTAGCTAGAGGGATTGTTA----GAACAAAGTTA-TGCAGAGACTCTCTTCACTCTCTTCCATCAC--AGAGAG---TCCAAGAGTAAAGATGTGGAGATGGTGAGGTAAACACAGCGATGCCTGCGTGCAGAGGAGATG---------------GGTGGCATGTCTGCTTAG------------CCAGTTATCTCCTGTGTTACCAGGCATGGCCCAGGAG--A
s panTro4.chr4             192880960 340 + 193495092 ----TGATCACCACACAT-CCAAGTTTGCATTCTGCCAACAATTTGCCCACAGTTGGGGCCAGAGTTGGCCAGAAACAGT---AAGTTACTGAGAAGGGCCAGATTAGATTAACCCCCAAAGCAATACCACTTATCACCAATAAAGATGAGGAGATGAGCTTGTAGCTAGAGGGATTGTTA----GAACAAAGTTA-TGCAGAGACTCTCTTCACTTTCTTCCATCAC--AGAGAG---TCCAAGAGTAAAGATGTGGAGATGGTAAGGTAAACACGGCGATGCCTGCGTGCAGAGGAGATG---------------GGTGGCATGTCTGCTTAG------------CCAGTTATCTCCTGTGTTACCAGGCATGGCCCAGGAG--G
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197983320 369 + 198332218 ----TGATCACCACACAT-CCAAGTGTGCATTCTGCCAACAATTTGCCCACAGTTGGGGCCAGAGTTGGCCAGAAACACT---AAGTTATGCAGAAGGGCCAGATTAGATTAACTCCCAAAGCAATACCACTTTTCACCAATAAAGATGAGGAGATGAGCTTGTAACTAGAGGGACTGTTA----GAACAAAGTTA-TGCAGAGAGTCTCTTCACTCTCTTCCATCACGGAGAGAG---TCCAAGAGTAAAGATGTGAAGATGGTGATGTAAACACTGCGATGCCTGCATGCAGAGGAGATGGGCATTTTATTCTCTGGCGTCATGTCTGCTTAGCCAGTATACTCACCAGTTATCTCCTGTGTTACCAGGCATGGCCAAGGAG--G
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113737027 354 + 115148730 ----TGATCACCACACAT-CCAAGTATGCATTCTGCCAACAATTTGCCCACAGTTGGGGCCAGAGTTGGCCAGAAACACT---AAGTTACGGAGAAGGGCCAGATTAGATTAACCCCCAAAGTAATACCACTTATCACCAATAAAGATGAGGAGATGAGCTTGTAGCTAGAGGGATTGTTA----GAACAAAGTTA-TGCAGAGAGTCTTTTCACTCTCTTCCATCACAGAGAGAG---TCCAAGAGTAAAGATGTGAAGATGGTGATGTAAACACGGTGATGGCTGCATGCAGAGGAGATG---------------GGCAGCATGTCTGCTTATCCAGTATACCCACCAGTTATCTCCTGTGTTACCAGGCATGGCCCAGGAG--G
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183569150 354 + 184069350 ----TGATCACCACACAT-CCGAGTGTGCATTCTGCCAACAATTTGCCCACAGTTGGGGCCAGAGCTGGCCAGAAGCACT---AGGGTACGGAGAAGGGCCAGATTAGATTAACCCCCAAAGTAATACAACTTATCACCAATAACGATGAGGAGATGAGCTTGTGGCTAGAGGGATTCCTA----GAACAAAGTTA-TGCAGAGAGTCTCTTCACTCTCTTCCATCCCAGAGGGAG---TCCAAGAGGAAAGATGTGAAGACGGTGATGTAAACACGGCGATGCCTGCATGCACAGGAGATG---------------GGAGGCATGTCTGCTTAGCCAGTATACCTACCAGTTATCTGCTGTGTTACCAGGCATGGCCCAGGGGG--
i rheMac3.chr5             C 0 I 74
s macFas5.chr5             188952019 353 + 189454096 ----TGATCACCACACAT-CCGAGTGTGCATTCTGCCAACAATTTGCCCACAGTTGGGGCCAGAGCTGGCCAGAAGCACT---AGGGTACGGAGAAGGGCCAGATTAGATTAACCCCCAAAGTAATACAACTTATCACCAATAACGATGAGGAGATGAGCTTGTGGCTAGAGGGATTCCTA----GAACAAAGTTA-TGCAGAGAGTCTCTTCACTCTCTTCCATCCCAGAGGGAG---TCCAAGAGGAAAGATGTGAAGACGGTGATGTAAACACGGCGATGCCTGCATGCACAGGAGATG---------------GGAGGCATGTCTGCTTAGCCAGTATACCTACCAGTTATCTGCTGTGTTACCAGGCATGGCCCAGGGG---
i macFas5.chr5             C 0 I 148
s papAnu2.chr5             178375876 353 + 178775436 ----TGATCACCACACGT-CCGAGTGTGCATTCTGCCAACAATTTGCCCACAGTTGGGGCCAGAGCTGGCCAGAAGCACT---AGGGTACGGAGAAGGGCCAGATTAGATTAACCCCCAAAGCAATACAACTTATCACCAATAACGATGAGGAGATGAGCTTGTGGCTAGAGGGATTCCTA----GAACAAAGTTA-TATAGAGAGTCTCTTCACTCTCTTCCATCCCAGAGGGAG---CCCAAGAGGAAAGATGTGAAGACGGTGATGTAAACACGGCGATGCCTGCATGCACAGGAGATG---------------GGAGGCATGTCTGCTTAGCCAGTATACCTACCAGTTATCTGCTGTGTTACCAGGCATGGCCCGGGGG---
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135315349 354 + 135778131 ----CGATCACCACACAT-CCGAGTGTGCATTCTGCTAACAGTTTGCCCACAGCTGGGGCCAGAGCCGGCCGGAAGCACT---AAGGTACGGAGAAGGGCCAGATCAGATTAACCCCCAAAGCAACACCGCTTATCACCAATAACGACGAGGAGATGAGCTTGTGGCTAGAGGGATTCCTA----GAACAAAGTTA-TGCAGAGAGTCTCTTCACTCTCTTCCGTCCCAGAGGGAG---TCCAAGAGGAGAGATGTGAAGACGGTGATGTAAACACGGCGATGCCTGCATGCACAGGAGATG---------------GGAGGCATGTCTGCTTAGCCAGTATACCTACCAGTTATCTGCTGTGTTACCAGGCATGGCCCAGGGG-G-
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190426226 357 - 190850796 ----GGACCACCCCACCT-CCAAGTCTGCATTCTGCTAACGA-TTGCCCACATTCAGGGGCAGATTCAGCCAGAAACACTAACAAGTTTCTGAGAAGTGCCAGATTAGATTATTCCCCCAAACAGTGCCACGTATCATCAGTAAAGATGAGGAGCTAACCTTGCAGCCAGAGGGCCTGTTA----GCACAAAGTTATTGTAGAGAGTCTCTTCACTCTCCTGTATCACAGagagaa---tccaagagtagagatgtgaagacggtgatgt--------------ctgcaggcagaggagacgggcgttttttctct-ggctgcatgtctgcttagtcagTATCCCCTCCAGTTACCTCCTGTGTTACCAGGCAAGGCCCAGGAG--G
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17857397 313 -  59632846 TAACTAAACACCACACATGCAGAGTTCAAATTCTCCTAACAATTTGCCAATAGTTAGGGCCAGTCTTGCC---------T---AGTTTACTGAGAAGCTCCAATACAGAATGGTCCAACAACTACAACCACTGT------ATAAA---GAAGAAATGAATTTCTAGCTAGAGAGATTGTTAGGGGGAAAAGGGGAT-TATAGAAGAACTCTCCCCTTTATTCCATTGCAAGGAGGGGACTCCAAGAGAAGAGATTGG----------------CACTTAAATCTCT-------------------------------GGTTACATGTC-GCTCAGCTAGGGTACTCACCAGTCATCCCCTACATTATCAAGAATGAGAAAAGA----
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87566501 1655 - 129401213 I

a score=98233.000000
s hg38.chr4_KI270925v1_alt    183649 28 +    555799 GTCTGGGAGAGCAGGTGgggatggtgag
s panTro4.chr4             192881300 28 + 193495092 GTCTGGGAGAGCAGGTGgggatggtgag
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197983689 28 + 198332218 GTCTGGGAGAGTACGTGGGGATGGTGAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113737381 28 + 115148730 GTCTGGGAGAGCAGGTGGGGATGGTGAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183569578 28 + 184069350 GTCTGGGAGAGTAGGTGgggatggtgag
i rheMac3.chr5             I 74 C 0
s macFas5.chr5             188952520 28 + 189454096 GTCTGGGAGAGTAGGTGgggatggtgag
i macFas5.chr5             I 148 C 0
s papAnu2.chr5             178376229 28 + 178775436 GTCTGGGAGAGTAGGTGGGGATGGTGAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135315703 28 + 135778131 GTCTGGGAGAGTAGGTGgggatggtgag
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190426583 28 - 190850796 GTCTGAGAGAGGAGGTGGTGATGGTGAG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17857710 28 -  59632846 ATCTAAGCAAATAAGTGGAGATGACAGG
i canFam3.chr16            C 0 I 200
e mm10.chr8                 87566501 1655 - 129401213 I

a score=1003218.000000
s hg38.chr4_KI270925v1_alt    183677 333 +    555799 aaagtgtgagtgctctgtgggtatggtagagccatgcaacgtagttgagtttgaagcttcttgccagcattct-actcaagatgcccatgtagataaaggatcccagcagcaagaacgtcat-----------ggcagggg-gtatagaggcgttggaggcaggttgtagaggtggaggtggcagggagtgtagaaaaggccaagtctgagctgggcagtg-ggagatccctctcttctgtggtcttctgaagagcccacacacaagccccgatgagagaactggcatttaaatg-----------------------------------------AGAAATGAG-AAAGAGCAACAGCCAGCTACAGAGAACTTTGCA-ATTTCCTGTT
s panTro4.chr4             192881328 333 + 193495092 aaagtgtgagtgctctgtgggtatggtagagccatgcaacgtagctgagtttgaagcttcttgccagaattct-actcaagatgcccatgtagataaaggatcccagcagcaacaatgtcat-----------ggcagggg-gtatagaggcgttggaggcaggttgtagaggtggaggtggcagggagtgtagaaaaggccaagtctgagctgggcagtg-ggaggtccctctcttctgtggtcttctgaagagcccacacacaagccccgatgagagaactggcatttaaatg-----------------------------------------AGAAATGAG-AAAGAGCAACAGCTAGCTACAGAGAACTTTGCA-ATTTCCTGTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197983717 322 + 198332218 AAAGTGTGAGTGCTCTGTGGGTATGGTAGAGCCATGCAACGTAGCTGAGTTTGAAGCTTCTTGCCAGCATTCT-CCTCAAGATGCTCATGTAGATAAAGGATCCCAGCAGCAAGAAGGTCAT-----------GGCAGGGG-GTATAGAGGCATTGGAGGCAGGTTGT----GTAGAGGTGGCGGAGAGTGTAGAAAAGGCCAAGTCTGAGCTGGGCAGTG-GGAGATCCCTCTCTTCTGTGGTCTTCTGAAGAGTCCACACACAAGCCCCAATGAGAGAACTGGCATTTAAATG-----------------------------------------AGAAATGAG-AAAGAGCAA-------CCAGAGAGATCTTTGCA-ATTTTCTGTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113737409 328 + 115148730 AAAGTGTGAGTGCTCTGTGGGTATGGTGGA-CCATGCAACGTAGCTGAGTTTGAAGCTTCTTGCCAGCATTCT-ACTCAAGATGCCCATGTAGAGAAAGGATCCCAGGAGCAAGAAGGTCAT-----------GGCAGGGG-GTATAGAGGCCTTGGAGGCAGGTAGT----GTAGAGGTGGCGGGAAGTGTAGAAAAAGCCAAGTCTGAGCTGGGCAGTG-GGAGGTCCCTCTCTTCTGTGGTCTTCTGAAGAGCCCACACACAAGCCCCAATGAGAGAACTGGCATTTAAATG-----------------------------------------AGAAATGAG-AAAGAGCAACAGCCAACCAAAGAGATCTTTGCA-ATTTCATGTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183569606 329 + 184069350 gaagtgcgagtgctccgtgggtatggtagaaccacgcagcatagctgagtgtgaagctacttgccagcattct-actcgagattctcgtgtagataacggatcccagcagcaagaaggtcat-----------ggcagggg-atatagaggaggtggaggcaggatgt----gtagaggtggccaggagtgtagaaaaggccaagtctgagctgggcagtg-ggaggttcctctcttctgtggtcctctgaagagtccacacacaagccccagtgagagaactggcatttaaatg-----------------------------------------AGAAATGAG-AAAGAGCAACAGCCAACCAGAGAGAATTTTGCA-ATTTCCTGTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188952548 329 + 189454096 gaagtgcgagtgctccgtgggtatggtagaaccacgcagcgtagctgagtgtgaagctacttgccagcattct-actcgagattcccgtgtagataacggatcccagcagcaagaaggtcat-----------ggcagggg-atatagaggaggtagaggcaggttgt----gtagaggtggccaggagtgtagaaaaggccaagtctgagctgggcagtg-ggaggtgcctctcttctgtggtcctctgaagagtccacacacaagccccagtgagagaactggcatttaaatg-----------------------------------------AGAAATGAG-AAAGAGCAACAGCCAACCAGAGAGAATTTTGCA-ATTTCCTGTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178376257 329 + 178775436 GAAGTGCGAGTGCTCCCTGGGTATGGTAGTACCACGCAGTGTAGCTGAGTGTGAAGCTACTTGCCAGCATTCT-ACTCGAGATTCCCGTGTAGATAACGGATCCCAGCAGCAAGAAGGTCAT-----------GGCAGGGG-ATATagaggaggtggaggcagatTGT----GTAGAGGTGGCCAGGAGTGTAGAAAAGGCCAAGTCTGAGCTGGGCAGTG-GGAGGTTCCTCTCTTCTGTGGTCCTCTGAAGAGTCCACACACAAGCCCCAAAGAGAGAACTGGCATttaaatg-----------------------------------------agaaatgag-aaagagcAACAGCCAACCAGAGAGAATTTTGCA-ATTTCCTGTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135315731 329 + 135778131 gaagtgcgagtgctccgtgggtatggtagaaccacgcagcgtagctgagtgtgaagcttctagccagcattct-actcaagattcccgtgtagataatggatcccagcagcaagaaggtcat-----------ggcagggg-atatagaggagatggaggcaggttgt----gtagaggtggccaggagtgtagaaaaggccaagtctgagctgggcagtg-ggaggtccctctcttctgtggtcctctgaagagtccacacacaagccccaatgagagaactggcatttaaatg-----------------------------------------AGAAATGAG-AAAGAGCAACAGCCAACCAGAGAGAATTTTGCA-ATTTCCTGTT
i chlSab2.chr7             C 0 I 1139
s calJac3.chr3             190426611 321 - 190850796 AAAGTATGAGGGCTCTGTGGGGACGGTAGAGCCATGTGACATAGCTGGGTTTGAAGCTTCTTGCCCAAATTCT-ACTCAAGATGAGCATTTAGATAAAGGATCTCAGCAGCAAGAAGGTCAT-----------GCCCGGGGCATACAGAGGAGTTGGAGGCAGGTCAT----GTAGAGGTGGGGAGGAGTGTAGGTAAGGCCAGGCCTGAGCTGAGCAGTG-GGAGGTCCCTCCCTTCTGCG----------GAGTCCACATGCAAGCCCCAGTGAGAGCGCTGGCATCTAAATG-----------------------------------------AGAAATGAG-AAAGAACAGCAGCCAACCTGAGAGGACTTTGCGTATTTCCTGTT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17857938 375 -  59632846 aaaaTgtgaggtctctatgagtaagatataatcacacaaaatagctgagtctgagtcttcttgccagtactccaactcaggatgtccctttacataaagaaccttggcaccaagaaggcgatagtggtatgtgggaaacgg-gtaaggaagaaagagaaacaggctgt----gtagaggtagaaggaagt-tagaaaatgtcagatcttaactatgcagtgaggagatc---ctcatctgaccctctctgaaaagtccat------gcccccatgagaaaaccagcatttaaatatcttccacttagatgcctcaaagtccaatcaatacttactcgggaatgagaaaaaagcagcaacccacccaagagaagactgcatccttcttggt
i canFam3.chr16            I 200 C 0
e mm10.chr8                 87566501 1655 - 129401213 I

a score=18684.000000
s hg38.chr4_KI270925v1_alt    184010 5 +    555799 TAACT
s panTro4.chr4             192881661 5 + 193495092 TAACT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197984039 5 + 198332218 TAACT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113737737 5 + 115148730 TAACT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183569935 5 + 184069350 TAACT
i rheMac3.chr5             C 0 I 1016
s macFas5.chr5             188952877 5 + 189454096 TAACT
i macFas5.chr5             C 0 I 1139
s papAnu2.chr5             178376586 5 + 178775436 TAACt
i papAnu2.chr5             C 0 I 1139
s chlSab2.chr7             135317199 5 + 135778131 taacT
i chlSab2.chr7             I 1139 C 0
s calJac3.chr3             190426932 5 - 190850796 TAACT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17858313 5 -  59632846 caacc
i canFam3.chr16            C 0 I 3
e mm10.chr8                 87566501 1655 - 129401213 I

a score=459823.000000
s hg38.chr4_KI270925v1_alt    184015 144 +    555799 GAGATTTTTTAAATTTTATTTTTCTTCTTCTTACATTCCCCTCAAACACACTGAAG-----GAGCT-ATCACCTAGCAAAAGAGAAAA-GGGCCTATTAAAGAGCTGATAAACTCCATCCTTTCCCCCACCGCCACCTCACACACACAATC
s panTro4.chr4             192881666 144 + 193495092 GAGATTTTTTAAATTTTATTTTTCTTCTTCTTACATTCCCCTCAAACACACTGAAG-----GAGCT-ATCACCTAGCAAAAGAGAAAA-GGGCCTATTAAAGAGCTGATAAACTCCATCCTTTCCCCCCCCGCCACCTCACACACACAATC
i panTro4.chr4             C 0 I 2556
s ponAbe2.chr4             197984044 144 + 198332218 GAGATGTTTTAAATTTTATTTTTCTTCTTCTTACATTCCCCTCAAACACACTGAAG-----GAGCT-ATCACCTAGAAAAAGAGAAAA-GGGCCTATTAAAGAGCTGATAAACTCCATCCTTTCCCCCACCGCCACCTCACACACACAATC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113737742 143 + 115148730 GAGATTTTTTAAATTTTATTTTTC-TCTTCTTACATTCCCCTCAAACACACTGAAG-----GAGCT-ATCACCTAGCAAAAGAGAAAA-GGGCCTATTAAAGAGCTGATAAACTCCATCCTTTGCCCCACCGCCACCTCACACACACACTC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183570956 144 + 184069350 GAGATTTTTTAAATTTTATTTTTCTTCTTCTTACATTCCCCTCAAATGCACTGAAG-----GAGCT-ATCACCTAGCAAAAGAGAAAA-GGGCCTATTAAAGAGCTGATAAACTCCATCTTTTCCCCCATCGCCACCTCACACACACACTC
i rheMac3.chr5             I 1016 C 0
s macFas5.chr5             188954021 144 + 189454096 GAGATTTTTTAAATTTTATTTTTCTTCTTCTTACATTCCCCTCAAATGCACTGAAG-----GAGCT-ATCACCTAGCAAAAGAGAAAA-GGGCCTATTAAAGAGCTGATAAACTCCATCTTTTCCCCCATCGCCACCTCACACACACACTC
i macFas5.chr5             I 1139 C 0
s papAnu2.chr5             178377730 144 + 178775436 gagattttttaaattttatttttcttcttcttacatTCCCCTCAAATGCACTGAAG-----GAGCT-ATCACCTAGCAAAAGAGAAAA-GGGCCTATTAAAGAGCTGATAAACTCCATCTTTTCCCCCATCGCCACCTCATACACACACTC
i papAnu2.chr5             I 1139 C 0
s chlSab2.chr7             135317204 144 + 135778131 GAGATTTTTTAAATTTTATTTTTCTTCTTCTTACATTCCCCTCAAATGCACTGAAG-----GAGCT-GTCACCTGGCAAAAGAGAAAA-GGGCCTATTAAAGAGCTGATAAACTCCATCTTTTCTCCCATCGCCACCTCACACACACACTC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190426937 138 - 190850796 GAGATTTTTTAAA------TTTTCTTTTTCTTACATTCCCCTCAAACCCCCTGTAG-----CAGCTAATCCCCTAGGAAAAGAGAAAA-GAGCATATTAAAGAGTTGATAAACTCCCTCCTTCTCCCCACCA-CATTGCACACACACACTC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17858321 139 -  59632846 gagatatctt--tcttcattttcattcttcctacattcccctcaaacacagtgaagacatagggct-atcaccaagaaagggagaaagcaggtatatgaaagagcagatgag---------tctcccctgcttttccccagACCTACACTT
i canFam3.chr16            I 3 C 0
e mm10.chr8                 87566501 1655 - 129401213 I

a score=2184101.000000
s hg38.chr4_KI270925v1_alt    184159 728 +    555799  
s panTro4.chr4             192884366 728 + 193495092  
i panTro4.chr4             I 2556 C 0
s ponAbe2.chr4             197984188 704 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113737885 725 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183571100 725 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188954165 725 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178377874 725 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135317348 725 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190427075 673 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17858460 670 -  59632846  
i canFam3.chr16            C 0 I 1644
e mm10.chr8                 87566501 1655 - 129401213 I

a score=1084509.000000
s hg38.chr4_KI270925v1_alt    184887 390 +    555799 AGCTTGATCTAG---GTAGGTACTTATTTTGTACATAAGCAAAAATTTAGAATTGTCATTTTATGTGCTTTTCTGTATTTATTTACttttattttttctattattacttttttgagatggagtcttgctctgtcgcccaggctggagtgcagtggcgcaatctcagttcacggcaacctccgcctcctgggttcatgccattct-ctgcctcagcct------------------------------------------------cccaagtagctgggactacaagcgcctgccacgatgcccggctaatt-----------------------tttgtattttagtagagatgaggtttcaccatgttggccaggctggtctggaattccttacctcaggtgatccgcctgcctcagcctcccaaagtgctgggattacaggtgtgagccaccatgcctggcc
s panTro4.chr4             192885094 390 + 193495092 AGCTTGATCTAG---GTAGTTACTTATTTTGTACATGAGCAAAAATTTAGAATTGTCATTTTATGTGCTTTTCTGTATTTATTTACttttattttttatattgttacttttttgagatggagtcttgctctgtcgcccaggctggagtgcagtggcgcgatctcagttcacagcaacctccgcctcctgggttcatgccattct-ctgcctcagcct------------------------------------------------cccaagtagctgggactacaagcgcctgccaccatgaccggctaatt-----------------------tttgtattttagtagagatggggtttcaccatgttggccagtctggtctggaattccttacctcaggtgatctgcctgcctcagcctcccaaagtgctgggattacaggtgtgagccaccatgcctggcc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197984892 391 + 198332218 AGCTTGATCTAG---GTAGTTACTTATTTTGTACATAAGCAAAAATTTAGAATAGTCATTTTATGTGCTTTTCTGTATTTATTTACttttattttttatattattacttttttgagatggagtctcgctctgttgcccaggctggagtgcagtggcacaatctcagttcacagcaagctccgcctcctgggttcatgccattctcctgcctcagcct------------------------------------------------ccagagtagctgggactacaggtgcctgccaccacgcccggctaatt-----------------------tttgtattttagtagagatggggtttcaccatgttggccaggctggtctggaattccttacctcaggtgatccgcctgcctcagcctcccaaaatgctgggattacaggtgtgagccaccatgtctggcc
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113738610 405 + 115148730 AGCTTGATCTAG---GTAGTTACTTACTTCGTACATAAGCAAAAATTTAGAATTGTCATTTTTTGTGCTTTTCTGTATTTATTTACttttattttttatattattacttttttgagatggagtctcgctctgtcgcccaggctggcgtgca--------atctcagttcacagcaacctccgcctcctgggttcatgccattct-ctgcttcagcct------------------------------------------------cccgagtagctgggactacaggcgcctgccaccatgcccggctaatttttgtattttagtagagatggggtttgtattttagtagagatggggtttcaccatgttggccaggctggtctggaattccttacctcaggtgatccgcctgcctcagcctcccaaagtgctgggattacaggtgtgagccaccatgcctggcc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183571825 392 + 184069350 ATTTTGATCTAG---GTAGTTACTTATTTTGTACATAAGCAAAAATTTAGAATTGTCATTTTATGTGCTTTTCTGTAtttattttcttttattttttatagtattacttttttgagatggagtctcgctctgtcacccaggctggagtgcagtggcgcgatcttggctcactgcaagctccgcctcccaggttcatgccattctcctgcctcagcca------------------------------------------------cccgagtagctgggactacaggcgcctgccaccacactcagctaattt----------------------tttgtattttagtagagatggagtttcaccatgttggccaggcttgtctggaattccttacttcaggtaatccacctgcctcagcctcccaaagtgctgggattacaggtgtgagccaccacgcctggcc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188954890 440 + 189454096 ATTTTGATCTAG---GTAGTTACTTATTTTGTACATAAGCAAAAATTTAGAATTGTCATTTTATGTGCTTTTCTGTAtttattttcttttattttttatagtattacttttttgagatggagtctcgctctgtcacccaggctggagtgcagtggcgcgatcttggctcactgcaagctccgcctcccaggttcatgccattctcctgcctcagccacccgagtagctgggactacaggcgcccgagtagctgggactacaggcgcccgagtagctgggactacaggcgcctgccaccacactcagctaattt----------------------tttgtattttagtagagatggagtttcaccatgttggccaggcttgtctggaattccttacttcaggtaatccacctgcctcagcctcccaaagtgctgggattacaggtgtgagccaccacgcctggcc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178378599 392 + 178775436 ATTTTGATTTAG---GCAGTTACTTATTTTGTACATAAGCAAAAATTTAGAATTGTCattttatatgcttttctgtatttattttcttttattttttatagtattacttttttgagatggagtctcgctctgtcacccaggctggagtgcagtggcgcgatcttggctcactgcaagctccgcctcccaggttcatgccattctcctgcctcagcca------------------------------------------------cccgagtagctgggactacaggcgcctgccaccacactcagcaaattt----------------------tttgtattctagtagagatggggtttcaccatgttggccaggcttgtctggaattccttacttcaggtaatccacctgcctcagcctcccaaagtgctgggattacaggtgtgagccaccatgcctggcc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135318073 389 + 135778131 ATTTTGATCTAA---GTAGTTACTTATTTTGTACATAAGCAAAAATTTAGAATTGTCATTTTATGTGCTTTTCTGTAtttattttcttttattttttatagtattacttttttgaaatggagtctcg--ctgtcacccaggctggagtgcagtggcgcgatcttggctcactgcaagctctgcctcccaggttcatgccattctcctgcctcagcct------------------------------------------------cccgagtagctgggactacaggtgcc-accatcacactcagctaattt----------------------tttgtattttagtagagatggggtttcaccatgttggccaggcttgtctggaattccttacctcaggtaatccacctgcctcagcctcccaaagtgctgggattacaggtgtgagccaccacgcccagcc
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190427748 390 - 190850796 aGCTTGATTCAGACAGTGGTTACCTATTTTGTATTTAAGCAGAAATTTAGAATTCTCATTTTATGTACTTTTCTGTATTTACTTA--tttatttttattattattactttctggagatggagtcttgctctgctgcccaagctggagtggagtggagcactgttggctcaccacagcctctgcctccaggtttca-gcgattctcctgcctcagcct------------------------------------------------cccgagtggctgggattacaggcatgtgccaccacacccagctaatt-----------------------tttgcattttagtagagagggggtttcaccatgttggcctggccagtctcaaact-ctgacctcaggtgatccacctgcttcagcctcccaaagtgctgggattaaaggtatgagccaccattcccgATC
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87566501 1655 - 129401213 I
e canFam3.chr16             17859130 1644 -  59632846 I

a score=48420.000000
s hg38.chr4_KI270925v1_alt    185277 13 +    555799 TGTATTTATATTA
s panTro4.chr4             192885484 13 + 193495092 TGCATTTATATTA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197985283 13 + 198332218 TGTATTTATATTA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113739015 13 + 115148730 TGTATTTATATTA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183572217 13 + 184069350 TGTATTTATATTA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188955330 13 + 189454096 TGTATTTATATTA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178378991 13 + 178775436 tgtatttatatta
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135318462 13 + 135778131 TGTATTTATATTA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190428138 13 - 190850796 TGTATTTATATTA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87568156 13 - 129401213 TATGTGTATATTA
i mm10.chr8                I 1655 C 0
e canFam3.chr16             17859130 1644 -  59632846 I

a score=20250.000000
s hg38.chr4_KI270925v1_alt    185290 6 +    555799 TATCTC
s panTro4.chr4             192885497 6 + 193495092 TATCTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197985296 6 + 198332218 TATCTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113739028 6 + 115148730 TACCTC
i nomLeu3.chr7b            C 0 I 6729
s rheMac3.chr5             183572230 6 + 184069350 TGTCTC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188955343 6 + 189454096 TGTCTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178379004 6 + 178775436 tgtctc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135318475 6 + 135778131 TGTCTC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190428151 6 - 190850796 TACCTA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87568169 6 - 129401213 TATTTC
i mm10.chr8                C 0 C 0
s canFam3.chr16             17860774 6 -  59632846 TACTTC
i canFam3.chr16            I 1644 C 0

a score=558993.000000
s hg38.chr4_KI270925v1_alt    185296 168 +    555799 AATAAATAAATAACCAGAACTGAGTTTTAATTAATATAATAAGACAATT-CTAAAT--TTAAGTGACTACACTATTATTTAATCTGA---CCAAACTAAGTGCAAAGGC----ATTCAACGTAGGGCAGTTAGTGGCAGTTATTTACAG----AAATTG----TCCATATTTACATGTCCTGCAAT
s panTro4.chr4             192885503 168 + 193495092 AATAAATAAATAACCAGAACTGAGTTTTAATTAATATAATAAGACAATT-CTAAAT--TTAAGTGACTACACTATTATTTAATCTGA---CCAAACTAAGTGCAAAGGC----ATTCAACGTAGGGCAGTTAGTGGCAGTTATTTACAG----AAATCG----TCCATATTTACATGTCCTGCAAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197985302 168 + 198332218 AATAAATAAATAACCAGAACTGAGTTTTAATTAATATAATAAGACAATT-CTAAAT--TTAAGTGACTACATTATTATTTAATCTGA---CCAAACTAAGCACAAAGGC----ATTCAATGTAGGGCAGTTAGTTGCAGTTATTTACAG----AAATTG----TCCATATTTACATGTCCTGCAAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113745763 163 + 115148730 aataaataaataaCCAGAACTGAGTTTTAAT-----TAATAAGAGCATT-CTAAAT--TTAAGTGACTACACTATTATTTAATCTGA---CTAAACTAAGTGCAAAGGC----ATTCAATGTAGGGCAGTTAGTGGCAGTTATTTACAG----AAATCG----CCCATATTTACATGTCCTGCAAT
i nomLeu3.chr7b            I 6729 C 0
s rheMac3.chr5             183572236 168 + 184069350 AATAAATAAATAACCAGAACTTAGTTTTAATTAGTATAATAAGACAATT-CTAAAT--TTAAGTCACTACACTATTATTTAATCTGA---CCAAACTAAGTGCAAAGGC----ATTCAACATAGGGCAGTTAATGGCAGTTATTTACAG----AAATCT----TCCGTATTTACATGTCCTACAAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188955349 168 + 189454096 AATAAATAAATAACCAGAACTTAGTTTTAATTAGTATAATAAGACAATT-CTAAAT--TTAAGTCACTACACTATTATTTAATCTGA---CCAAACTAAGTGCAAAGGC----ATTCAACATAGGGCAGTTAATGGCAGTTATTTACAG----AAATCT----TCCGTATTTACATGTCCTACAAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178379010 168 + 178775436 aataaataaataaccagaacTTAGTTTTAATTAGTATAATAAGACAATT-CTAAAT--TTAAGTCACTACACTATTATTTAATCTGA---CCAAACTAAGTGCAAAGGC----ATTCAACATAGGGCAGTTAATGGCAGTTATTTACAG----AAATCT----TCCATATTTACATGTCCTACAAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135318481 168 + 135778131 AATAAATAAATAACCAGAACTTAGTTTTAATTAGTATAATAAGACAATT-CTAAAT--TTATGTCACTACATTATTATTTAATCTGA---CCAAACTAAGTGCAAAGGC----ATTCAACATAGGGCAGTTAATGGCAGTTATTTACAG----AAATCT----TCCGTATTTACATGCCCTACAAT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190428157 169 - 190850796 GATAAGTAAATGGTCAGAACTGAGCTTTAATTAATGCAATAAGACAATT-CTAAAT--TTAAATGACTACACTACTATTTAATCTCA---CCAAAATAAGTGCAAAGGC----ATTCAACACAGGGCAGTCAGTGGCAGTTATTTACAG---AAAAACT----TCCATATTAATATGTCCCACAGT
i calJac3.chr3             C 0 I 1
s mm10.chr8                 87568175 150 - 129401213 --------AATGAC---------------------ATAATGAAGCTATTATTAAATTATTAAATAGCCAAACTATTACACAATCTGA---CTACAATACCTCTTAGGTCACATACTTAGTGTAACATACTTTATGATCATTATTTACAG----ATTTTTAAAAACTATATTTATGTCTGCTGTGAT
i mm10.chr8                C 0 C 0
s canFam3.chr16             17860780 173 -  59632846 AATAAGAAAACCATCAGAACAGAGCTCTATATAACAAAATAAGGTAATT-CTGAAC----AAATTACTAGAATATTATATAATCTAATGGCATTATTAAGTGTAAGGGC----ATTCAACCTAGCATAGTTGGTAGCAGTTATTTACAGATAAAAATAT----TACATATTTATATCCCACACAAT
i canFam3.chr16            C 0 C 0

a score=784103.000000
s hg38.chr4_KI270925v1_alt    185464 295 +    555799 GTGATGTTTCTTCACATACAGTTTGTTTAATAAGCATAACATACCACGGTTCctaaaccgtgag--tttgggttcttactgcactatttattgtttgcataaccctgagaagttacctcacctcttt-taaaaccaagataaaaatgtcaccctaccttaccagattgttgaaaaaattaaaggtgtcatgtatgcctagcagagagtgagagctaaataaatgttATATTTTGTCTTTATTAGTATTATCATTTCTCTTCCA---------------------------------------------CAAATCTCTAGTAAACATGACTAGG------------------------------------------CTTTTATAAA
s panTro4.chr4             192885671 295 + 193495092 GTGATGTTTCTTCACATACAGTTTGTTTAATAAGCATAACATACCACGGTTCCTAAATCAtgag--tttgggttcttgctgcactatttattgtttgcataaccctgagaagttacctcatctcttt-taaaaccaagataaaaatgtcaccctaccttaccagattgttgaaaaaattaaaggtgtcatgtatgcctagcagagagtgagaactaaataaatgttATATTTTGTCTTTATTAGTATTATCAtttctcttcca---------------------------------------------caaatctctagtaaacatgactagg------------------------------------------cttttataaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197985470 294 + 198332218 GTGATGTTTCTTCATATACAGTTTGTTTAATAAGCATAACATACCAAGGTTCCTAAACCAtgag--tctggtctcttgctgcactatttattgtttgcataaccctgagaagttacctcacctcttt-taaaaccaagataaaaatgtcaccctaccttactagattgttgaaaaaattaaaggtgtcatgtatgcctagcagagagtgagaactaaataaatgttATATTTTGTCTTTATTATTATTATCATTTCTC-TCCA---------------------------------------------CAAATCTCTAGTAAACATGACTAGG------------------------------------------CTTTTATAAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113745926 295 + 115148730 GTGATGTTTCTTCACATACAGTTTGTTTAATAAGCATAACATACCACGGTTCCTAAACCAtgag--tttgggttcttgctgcactatttattgtttgcataaccctgagaagttacctcacctcttt-taaaaccaagataaaaatgtcaccctagcttactagattgttgaaaaaattaaaggtgtcatgtatgcctaacagagagtgagaattaaataaatgttATATTTTGTCTTTATTATAGTTATCAtttctcttcca---------------------------------------------caaatctctagtaaacatgactagg------------------------------------------tttttataaa
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183572404 291 + 184069350 GTGATGTTTCTTCACATATAGTTTGTTCTATAAGCATAACATACCATGGTTCCTaaaccatgag--tttgggttctcgctgcactatttattgtttgcataaccccgacaagttacctcatctcttt-taaaaccaagataaaaatgtcaccataccttactagattgttgaaaaaattaaaggggccatgtatgCCTAGCAGAGATTGAGAAC----TAAATGTTATATTTTGTCTTTATTGTTATTATCATTTCTCTTCCA---------------------------------------------CAGATCTCGAGTAAACATGACTCAG------------------------------------------CTTTTATAAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188955517 291 + 189454096 GTGATGTTTCTTCACATATAGTTTGTTCTATAAGCATAACATACCATGGTTCCTAAACCATGAG--TTTGGGTTCTCGCTGCACTATTTATTGTTTGCATAACCCCGACAAGTTACCTCATCTCTTT-TAAAACCAAGATAAAAATGTCACCATACCTTACTAGATTGTTGAAAAAATTAAAGGGGCCATGTATGCCTAGCAGAGAGTGAGAAC----TAAATGTTATATTTTGTCTTTATTGTTATTATCATTTCTCTTCCA---------------------------------------------CAGATCTCGAGTAAACATGACTCAG------------------------------------------CTTTTATAAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178379178 291 + 178775436 GTTATGTTTCTTcacatataatttgttttataagcATAACATACCATGGTTCCTAAACCATGAG--TTTGGGTTCTCGCTGCACTATTTATTGTTTGCATAACCCCGACAAGTTATCTCATCTCTTT-TAAAACCAAGATAAAAATGTCACCATACCTTACTAGattgttgaaaaaattaaaggGGCCATGTATGCCTAGCAGAGAGTGAGAAC----taaatgttatattttgtctttattgttattatcatttctCTTCCA---------------------------------------------CAGATCTCGAGTAAACATGACTCAG------------------------------------------CTTTTATAAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135318649 291 + 135778131 GTGATGTTTCTTCACATATAGTTTGTTTTATAAGCATAACATACCATGGTTCCTaaaccatgag--tttgggttctcgctgcactatttattgtttgcataaccccgacaagttacctcatctcttt-taaaaccaagataaaaatgtcaccataccttactagattgttgaaaaaattaaaggggccatgtatgCCTAGCAGAGAGTGAAAAC----TAAATGTTATATTTTGTCTTTATTGTTATTATCATTTCTCTTCCA---------------------------------------------CAGATCTCTAGTAAACATGACTCGG------------------------------------------CTTTTATAAA
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87568325 369 - 129401213 ATGATTTTTCTCCATGTATAGATTAGCCATT----ACAATACAGAGTAGCAACCAAAGTATGAG--TTTAGGTTCTAGCTGAGCCCTCCCTTCTCTGTGTGGTCCTGTTAAGTTACCAAATTTC-CC-AAAAGCTGGAATGAAAGTGTCACC-TACATTATTGAACTGAT-AAAAAATGAAAGGAGAAATGTAT--TTGGCAGAGCATAAAAATGAAATAAATGCTATATTCTATCAtc----tccctctcctttcccctccccctcttccccctctccctctGTATGCACAtgctatggatttaactcagaaccttaacatgctaggcagggactctgtccctgaggtatgtccccaCTTAGTCCACACTTATACTCTTGTCAA
i mm10.chr8                C 0 C 0
s canFam3.chr16             17860953 287 -  59632846 ---------------ATACAGGCCAgc-----agcacaatgcaacattgtccttacagtaggagtttttgggttctagc-gccctacttactatctgtgtagccctgataaattacccaacctctttataaagccaagataaaagtgttacc-taccatactggattattggaacaattaagggggtaatacgtgcctggcaaagggtaaacactaaataaatg-----ttttatcattACCATTATTTTCATATATTTTTCA---------------------------------------------CAAATCACTGTTAAGCTTGCATATG--------------------------TTATCAAtttttttttcttttttaat
i canFam3.chr16            C 0 I 172
e calJac3.chr3             190428326   1 - 190850796 I

a score=618980.000000
s hg38.chr4_KI270925v1_alt    185759 241 +    555799 CAATTTATGCAACCACAGGAATGTCATTTTCAGCATAGACACAATTTTTGTCACT--GATTGAGATCAGTGCAAAACCAGGAAACCAGAAGGAAG----------------------------------TGGAGAAGAGAAAAGGCAGG----TGGCATTGAATGGATGTGGGTGAGTCAGAGTGAAGGTGTTTGCAGCACAGCCTTGAAAGAGGGAGAA---ACGCAGATGCACACCATCCCCACTCCTTAATGC------GCACTCCAGTGTCTGTGGGCAGAAGAGC
s panTro4.chr4             192885966 241 + 193495092 caatttatgcaaccacaggaatatcattttcagcatagacacaatttttgtcact--gattgagatcattgcaaaaccaggaaaccagatggaag----------------------------------tggagaagagaaaaggcagg----tgacattgaatggatgtggatgagtcagagtgaaggtgtttgcagcacagccttgaaagagggagaa---acgcagacgcacattatccccactccttaatgc------gcactccagtgtctgtgggcaggAGAGC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197985764 241 + 198332218 CAATTTATGCAACCACAGGAATATAATTTTCACCGTAGACACAATTTTTGTCACT--GATTGAGATCATTGCAAAACCAGGAAACCAGATGGAAG----------------------------------TGGAGAAGA-AAAAGGCAGG----TGACACTGAATGGATGGGGATGAGTCAGAGTGAAGGTGTTTGCAGCACAGCCTTGAAAGAGGGAGAAC--ACGCAGACGCACATTATCCCCACTCCTTAACGC------GCACTCCAGTGTCTGTGGGCAGGAGAGC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113746221 241 + 115148730 caatttatgcaaccacaggaatatcattttcagcatagacacaatttttgtcact--gattgagatcattgcaaaaccaggaaaccagatggaag----------------------------------tggagaagaaaaaaggcagg----tgacattgaatggatggggatgagtcagagtgaagg-gtttgcagcagagccttgaaagagggagaaa--acgcagacgcacattatccccactccttaacgc------gcactccagtgtctgtgggcagggaagC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183572695 276 + 184069350 CAATTTATGCAACCACAGGAATATAATTTTCAGCATAGACACAATTTTTGTCACT--GATTGAGATCATTGCAAAACCAGGAAACCAGATGGAAGTGAAGAAGAAAAAGGGCAGGTGACATTGAATGGATGGAGAAGAAAAAGGGCAGG----TGACATTGAATGGATGGGGATGAGTCAGAGTGAAGGTGTTTGCAGCAGAACATTGAAAGTGGGAGAAA--ACACAGAAGCACGTTGTCCCCACTACTTCACGT-----GGCACTCCAGTGTCT-TGGGCAGGAGAGC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188955808 242 + 189454096 CAATTTATGCAACCACAGGAATATAATTTTCAGCATAGACACAATTTTTGTCACT--GATTGAGATCATTGCAAAACCAGGAAACCAGATGGAAG----------------------------------TGGAGAAGAAAAAGGGCAGG----TGACATTGAATGGATGGGGATGAGTCAGAGTGAAGGTGTTTGCAGCAGAACATTGAAAGTGGGAGAAA--ACACAGAAGCACGTTGTCCCCACTACTTCACGC-----GGCAGTCCAGTGTCT-TGGGCAGGAGAGC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178379469 276 + 178775436 CAATTTATGCAACCACAGGAATATAATTTTCAGCATAGACACAATTTTTGTCACT--GATTGAGATCATTGCAAAACCAGGAAACCAGATGGAAGTGGAGAAGAAAAAGGGCAGGTGACACTGAATggatggagaagaaaaaagacaag----tgACATTGAATGGATGGGGATGAGTCAGAGTGAAGGTGTTTGCAGCAGAACATTGAAAGTGGGAGAAA--ACACAGAAGCACGTTGTCCCCACTCCTTCACGC-----GGCACTCCAGTGTCT-TGGGCAGGAGAGC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135318940 276 + 135778131 TAATTTATGCAACCACAGGAATATAATTTTCAGCATAGACACAATTTTCGTCAGT--GATTGAGATCATTGCAAAACCAGGAAACCAGATGGAAGTGGAGAAGAAAAAGGGCAGGTGACACTGAATGGATGGAGAAGTAAAAGGGCAGG----TGACATTGAATGGATGGGGATGAGTCAGAGTGAAGGTGTTTGCAGCAGAACGTTGAAAGCGGGAGAAA--ACACAGAAGCACGTTGTCCCCACTCCTTCACAT-----GGCACTCCAGTGTCT-TGGGCAGGAGAGT
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87568694 218 - 129401213 CAATTTATGTGGCCACAGCAATATTATGTTGACTATATAGATTATATAAGCCACTCCAACTAAAGTAATTTTAAAATCAGA----TAGAAGATAG----------------------------------TGGG------AAATGCGAGG----TAACACAGCATGAATCAGGATGAGTAAGGCTAAATACATTTGCAATGTAGCC-----------------------AATGTACAAAAATCTCATGCTGCAAAGCCAAGCACTACTCCAGTATCTGTAGGAAAAGTGA-
i mm10.chr8                C 0 C 0
s canFam3.chr16             17861412 245 -  59632846 CAATTTATACAATTATAGCACTATCTTTTGAAGTATATACACAATTTTAGTTACT----TTGAGACAGTTTTGAAACCAAAAAACTAGATGGAAG----------------------------------TTGGGAAGAAAATAGGGAGGTAGCTAGCATTCAATGGATGAGAATGCGTAAGTATAAAGATATTTGGAGTACATCTTTGAAAAAGAAAAAAATGATGCTCAAGCACAATAATCCTATTCCTTAATTT------CTACACCAGTGTCT-GTGGCAGGAGggc
i canFam3.chr16            I 172 C 0
e calJac3.chr3             190428326   1 - 190850796 I

a score=807361.000000
s hg38.chr4_KI270925v1_alt    186000 278 +    555799 CTGCCG-CCACCACGGCGGAACTGAAGCAATCCAGC----CCCAGCAG----AGGAGAGAGCTGAGAAATGGCAATTCAGCTGGACCagcattattcacctcaagagttcagcttactctgcgtctctgacccggagatggtatcagacaagt-agagaggagaggagtcatcattgcagagctgtgaaatcactatggcaatacatatttcaatatctga----------------------------------------------------------------tta-aagagattaag----att----tgatacagtgca---------------------------------------------------------------------------------cataaagcctgta-----tcaaa-ccaaattaattctagtcata
s panTro4.chr4             192886207 278 + 193495092 CTGCCA-CCACCACGGCGGAATTGAAGCAATCCAGC----CCCAGCAG----AGGAGAGAATTGAGAAATGGCAATTCAGCTGGACCagcattattcacctcgagagttcagcttactctgtgtctctgacccggagatggtatcagacaagt-agagaggagaggagtcatcattgcagagctgtgaaatcgctatggcaatacatatttcaatatctga----------------------------------------------------------------tta-aagagactaag----att----tgatacagtgca---------------------------------------------------------------------------------cataaagcctgta-----tcaaa-ccaaattaattccagtcata
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197986005 261 + 198332218 CT------------------ACTGGAGCAATCCAGC----CTCAGCAG----AGGAGAGAATTGAGAAATGGCAGTTCAGCTGGACCAGCATTATTCACCTCCAGAGTTCAGGTTACTCTGTGTCTCTGACCCGGAGATGGTATCAGACAAAT-GGAGAGGAGAGAAGTGATCATTGCAGAGCTGTGAAATCACTATGGCAATACATATTTCAATATCTGA----------------------------------------------------------------TTA-AAGAGACTAAG----ATT----CGGTACAGTGCA---------------------------------------------------------------------------------TATAAAGCCTGTA-----TCAAA-CCAAATTAATTCCAGTCATA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113746462 278 + 115148730 CTGCTG-CCACCATGGCGGAACTGAAGCAATCCAGC----CCCAGCAG----GGGAGAGAGTTGAGAAATGGCAATTCAGCTGGACCAGCATTACTCACCTCAAGAGTTCAGGTTACTCTGTGTCTCTGACCCGGAGATGGTATCAGACAAAT-GGAGAGGAGAGAAGTGATCATTGCAGAGCTGTGAAATCACTATGGCGATACATATTTCAATATCTGA----------------------------------------------------------------TTA-AAGATACTAAG----ATT----TGATACTGTGCA---------------------------------------------------------------------------------CATAAAGCCTGTA-----TCAAA-CCAAATTAATTCCAGTCATA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183572971 279 + 184069350 CTGCCG-CCACAATGGTGGAACCGAAGCAACCCAGC----CCCATCAG----AGGAGAAAGCTGAGAAATGGCCATTCAGCTGGACCAGCATCAGTcacctccagagttcaggttactctgtttctctgacccggagatggcatcaggcgagt-agagaggagaggagtcatcattgcagagcggtgaaatcactatggcaatacagatttcaatatctaa----------------------------------------------------------------tta-aagagaataaa----att----tgatacagttca---------------------------------------------------------------------------------cataaagcctgta-----tcaaagcaaaattaatttcagtcata
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188956050 279 + 189454096 CTGCCG-CCACAATGGTGGAACCGAAGCAACCCAGC----CCCATCAG----AGGAGAAAGCTGAGAAATGGCCATTCAGCTGGACCAGCATCAGTCACCTCCAGAGTTCAGGTTACTCTGTTTCTCTGACCCGGAGATGGTATCAGACGAGT-AGAGAGGAGAGGAGTCATCATTGCAGAGCGGTGAAATCACTGTGGCAATACAGATTTCAATATCTAA----------------------------------------------------------------TTA-AAGAGAATGAA----ATT----TGATACAGTTCA---------------------------------------------------------------------------------CATAAAGCctgta-----tcaaagcaaaattaatttcagtcata
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178379745 279 + 178775436 CTGCCG-CCACCATGGAGGAACCGAAGCAACCCGGC----CCCATCGG----AGGAGAGAGCTGAGAAAGAGCTATTCAGCTGGACCAGCATCAGTCACCTCCAGAGTTCATGTTACTCTGTTTCTCTGACCCGGAGATGGTATCAGACGAGT-AGAGAGGAGAGGAGTCGTCACTGCAGAGCGGTGACATCACTATGGCAATACAGATTTCAATATCtaa----------------------------------------------------------------tta-aagagaataaa----att----tgaTACGGTTCA---------------------------------------------------------------------------------CATAAAGCCTGTA-----TCAAAGCAAAATTAATTCCAGTCATG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135319216 279 + 135778131 CTGCCG-CCACCATGGTGGAACCAAAGCAACCCAGC----CCCATCGA----AGGAGAGAGCTGAGAAACGGCCATTCAGCTGGACCAGCACCAGTCACTTCCAGAGTTCAGGTTACTCTGTTTCTCTGACCCGGAGATGGTATCAGCCGAGT-AGAGAGGAGAGGAGTCATCACTGCAGAACGGTGAAATCACTATGGCAATACAGATTTCAATATCTAA----------------------------------------------------------------TTA-AAGAGAATAAG----ATT----TGATACGGTTCA---------------------------------------------------------------------------------CATAAAGCctgta-----tcaaagcaaaattaattccagtcata
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190428327 263 - 190850796 CTGCCG-TCACCACGGTGGGACTGAAGTGATTCAGC----CCCATCAG----GGGAGA-----GAGAAACAGTAATTCAGCTGGACCAGCGTT----ACCTCAAGAGTTCAGGTTACTCTA--TCTCTGACACCCGGATGGTACCACACAAGT-AGAGAGGAAAGGAGTCGTCATTGCAGAGCTATGAAATCACTATGGCAACAAATAATTGAATATCT----------------------------------------------------------------------AAGAAAATAAA----GTT----TTATAGAGTGTA---------------------------------------------------------------------------------TGTAAAGTATGTA-----TCAAAGCAAAATTAATTCCAGTCATA
i calJac3.chr3             I 1 C 0
s mm10.chr8                 87568912 434 - 129401213 CCCAGA-tcatcataaagaacctaaagcaatacaattcagtctactag----aggcaaaggttgggaaatcgctactcagttgcaccaatatcactcatgtcaagaatccaagtcattcca--tctctggaaccactgtggcatcAAAGTGTTAAGAAAAGAAAAAAATCACCATT-CAGAGCTAGGGAATCATGATAGCAGTGAGAGCTTGACTACCTAAGTACATGTTTGCTACATTGTATATAGTACCTTACATCAAAGCAAAATCAACTCCAATCATGTGTCTA-AAGAGCCCGAA----ATTTTGCTGGTGATGTTCAGTTTTCAATAGAAAGCAGCTCTATTTTACTCATTCATTTACGATGTGTAACATGATGAGCTACagcagctgtgcttgccttcacaagacctgtacaaggtcaaa-ccaagtaacatcccatcata
i mm10.chr8                C 0 I 281
s canFam3.chr16             17861657 281 -  59632846 ctgaagttcatcgcagtagaactaaagcaatacaac----cctatctattccagaagaggactgagaaatagctgctcaaccataccactact-----cctcaagattctgagttagtgta--tgtctgatgccaagaaaacaccagacaagt-agagaggaaaggagtcattctatcag-tttatgaaatcactttggcaatgaacatttgaacatgtga----------------------------------------------------------------ctagaagaaaagaagcacactt----tgattcagtgta---------------------------------------------------------------------------------cacaatgtctgta-----tcaaggcaaaattaatttcagtcata
i canFam3.chr16            C 0 C 0

a score=282289.000000
s hg38.chr4_KI270925v1_alt    186278 85 +    555799 ttttttaaactgtggaagaagatcctgaaaattttctagtgattattaggtaataaatgaaaatcaacactcctgtattcactaa
s panTro4.chr4             192886485 85 + 193495092 ttttttaaactgtggaagaagatcctgaaaattttctagtgattattaggtaataaatgaaaatcaaccctcctgtattcactaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197986266 85 + 198332218 TTTTTTAAACTGTGGAAGAAGATCCTGAAAATTTTCTAGTGATTATTGGGTAATAAATGAAAATCAACCCTCCTGTATTCACTAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113746740 84 + 115148730 TTTTTT-AACAGTggaagaagatcctgaaaattttctagtgtttattgggtaataaatgaaaatcaaccctcctgtattcactaa
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183573250 85 + 184069350 ttttttaaactgtggaagaagatcctgaaaattttctagtgattattgggtaataaatgaaaatcaaccctcctgtattcactaa
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188956329 85 + 189454096 ttttttaaactgtggaagaagatcctgaaaattttctagtgattattgggtaataaatgaaaatcaaccctcctgtattcactaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178380024 85 + 178775436 TTTTTTAAACTGTGGAAGAAGATCCTGAAACTTTTCTAGTGATTATTGggtaataaatgaaaatcaacCCTCCTGTATTGACTAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135319495 85 + 135778131 ttttttaaactgtggaagaagatcctgaagattttctagtgattattgggtaataaatgaaaatcaaccctcctgtattcactaa
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190428590 85 - 190850796 GTTTCTAAACTGTGGAAGAAGATCCTGAAAATTTTCTAGTTATTACTGGGTAATAAATGAAAATCGACTCTACTGTGTTCACTAG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17861938 77 -  59632846 tttttgaaactgaaggag----tc----aaattttctagcagccgttgaataataaacagaagtcagtcatactgcgtgcattaa
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87569346 281 - 129401213 I

a score=10399.000000
s hg38.chr4_KI270925v1_alt    186363 4 +    555799 ttta
s panTro4.chr4             192886570 4 + 193495092 ttta
i panTro4.chr4             C 0 I 142
s ponAbe2.chr4             197986351 4 + 198332218 TTTA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113746824 4 + 115148730 tttg
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183573335 4 + 184069350 tgta
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188956414 4 + 189454096 tgta
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178380109 4 + 178775436 TGTA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135319580 4 + 135778131 tgta
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190428675 4 - 190850796 TTTA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87569627 4 - 129401213 TCTC
i mm10.chr8                I 281 C 0
s canFam3.chr16             17862015 4 -  59632846 ttta
i canFam3.chr16            C 0 C 0

a score=379192.000000
s hg38.chr4_KI270925v1_alt    186367 121 +    555799 agacctg-tgaaatgtttc-------------------tgtagtctaacca----ctgt----------------------------------------------------------------------gctatttt--actagttttcataaacaaccaaaaaatattcatagcttcactgaagaccttgggttctcagccctccactgtgcccat
s panTro4.chr4             192886716 121 + 193495092 AGACCTG-TGAAATGTTTC-------------------TGTAGTCTAACCA----CTGT----------------------------------------------------------------------GCTATTTT--ACTGGTTTTCATAAACAACCAAAAAATAttcatagcttcactgaagaccttgggttctcagccctccactgtgcccat
i panTro4.chr4             I 142 C 0
s ponAbe2.chr4             197986355 191 + 198332218 AGACCTG-TGAAATGTTTC-------------------TGTAGTCTAACCA----CTATGCTATTTTAATAACCCTCCTGTATTCACTAATTTGAGACCTGTGAAATGTTTCTGTAGTCTAACCACTACGCTATTTT--ACTGGTTTTCATAAACAACCAAAAAATACTCATAGCTTCACTGAAGACCTTGGGTTCTCAGCCCTCCACTGTGCCCAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113746828 120 + 115148730 agacctg-tg-aacgttta-------------------tgttgtctaacca----ctat----------------------------------------------------------------------gctatttt--actggttttcataaacaaccaaaaaatactcatagcttcactgaagaccttgggatctcagccccctactgtgcccat
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183573339 121 + 184069350 agacctg-cgaaaggattc-------------------tgtaatctaacca----ctat----------------------------------------------------------------------gctatttt--attggttttcataaacaaccaaaaaatactcattgcttcacagaagaccttgggttctcagccctccactgtgcccat
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188956418 121 + 189454096 agacctg-cgaaaggattc-------------------tgtaatctaacca----ctat----------------------------------------------------------------------gctatttt--attggttttcataaacaaccaaaaaatactcattgcttcacagaagaccttgggttctcagccctccactgtgcccat
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178380113 125 + 178775436 AGACCTG-TGAAATGATTC-------------------TGTAATCTAACCAAACCCTAT----------------------------------------------------------------------GCTATTTT--ATTGGTTTTcataaacaaccaaaaaatacTCATTGCTTCACGGAAGACCTTGGGTTCTCAGCCCTCCACTGTGCCTAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135319584 121 + 135778131 agacctg-tgaaatgattc-------------------tgtaatctaatca----ctat----------------------------------------------------------------------gctatttt--attggttttcataaacaaccaaaaaatattcattgcttcacggaagaccttgggttctcagccctccactgtgcccat
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190428679 117 - 190850796 AGACACG-TGTAATGTTTC-------------------TGTGGTCTGACCA----CTAT----------------------------------------------------------------------GCTATTTT--ATTGGTTTTCAT----AACCAAAAAACATTCACAGCTTCACTGAAGACCTTCGGCTCTCAGCCTTCTTTTGCGCTCAC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87569631 139 - 129401213 AGACTTGTTGAAATATTACATTAAAATGTATTGAGTATTTTATTACAGTCA----TTAT----------------------------------------------------------------------GTCATTTTTAGTTAGTTTTCGTGAACGAAGACAAATCATTAAACATTTTGCCAGATACCTTAGAATTTGAACTCTAT----TGTTCAT
i mm10.chr8                C 0 C 0
s canFam3.chr16             17862019 114 -  59632846 agacacg-tgaagtgattt-------------------tgtaat-----ca----ctgt----------------------------------------------------------------------gctgtttt--attggttttcataaacag--aaaaattactcatagattcactaaagaccttagactttcaatcctattttgtgcccat
i canFam3.chr16            C 0 I 227

a score=14203.000000
s hg38.chr4_KI270925v1_alt    186488 11 +    555799 aaagccttatg
s panTro4.chr4             192886837 11 + 193495092 aaagccttatg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197986546 11 + 198332218 AATGCATTAAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113746948 11 + 115148730 aatgcgttaag
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183573460 11 + 184069350 aatgacttaag
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188956539 11 + 189454096 aatgacttaag
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178380238 11 + 178775436 AATGACTTAAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135319705 10 + 135778131 -atgacttgag
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190428796 10 - 190850796 AATGTATTAA-
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87569770  9 - 129401213 A--GTCTCAAA
i mm10.chr8                C 0 C 0
e canFam3.chr16             17862133 227 -  59632846 I

a score=522818.000000
s hg38.chr4_KI270925v1_alt    186499 151 +    555799 tttctttcctgggaattctcctatga-cagaattattttagaatgttgatcctcAAAAATTGGGACATGATACTTTAGCAAAACATCATTTTGAGCCAATATT---TGCAATGCTGAGATTTCTAAGTCCACATAAAGGTC------------TCCAGA--------------------------------------------CTGTTTGT
s panTro4.chr4             192886848 151 + 193495092 tttctttcctgggaattctcctatga-taggATTATTTTAGCATGTTGATCCTCAAAAATTGGGACATAATACTTTAGCAAAACATCATTTCGAGCCAATATT---TGCAATGCTGAGATTTCTAAGTCCACATAAGCGTC------------TCCAGA--------------------------------------------CTGTTTGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197986557 151 + 198332218 TTTCTCTCCTTGGAATTCTCCTATGA-TAGGATTATTTTAGAATGTTGATCCTCAAAAAGCCAGACATGATACTTTAGCAAAACATCATTTTGAGCCAATATT---TGCAACGCTGAGATTTCTAAGTCCACATAAGGGTC------------TCCAGA--------------------------------------------CTGTTTGT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113746959 151 + 115148730 tttctctcctgggaattctcctatga-taggatttttttagaatgttgatcctcAAAAAGCGGGACATGATACTTTAGCAAAACGTAATTTTGAACCAATATT---TGCAACGCTGAGATTTCTAAGTCCACATAAGGGTC------------TCCAGA--------------------------------------------CTGTTTGA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183573471 151 + 184069350 tttctctcctgggaattctcctaaga-taggattattttagaatgctgagcctcAAAAAGTGGGACATCATACTTTAGCAAAACATCATTTTGAGCCAATATT---TGCAACACTAAGATTTCTAAGTCCACATAAGGGTC------------TCCAGA--------------------------------------------CTGTTTGT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188956550 151 + 189454096 tttctctcctgggaattctcctaaga-taggattattttagaatgctgagcctcAAAAAGTGGGACATCATACTTTAGCAAAACATCATTTTGAGCCAATATT---TGCAACACTAAGATTTCTAAGTCCACATAAGGGTC------------TCCAGA--------------------------------------------CTGTTTGT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178380249 151 + 178775436 TTTCTCTCCTAGGAATTCTCCTATGA-TAGGATTATTTTAGAATGCTGAGCCTCCAAAAGTGGGACATAATACTTTAGCAAAACATCATTTTGAGCCAATATT---TGCAACGCTAAGATTTCTAAGTCCACATAAGGGTC------------TCCAGA--------------------------------------------CTGTTTGT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135319715 151 + 135778131 tttgtcttctgggaattctcttatga-taggattattttagAGTGCTGAGCCGCAAAAAGTGGGACATCATACTTCAGCAAAACATCATTGTGAGCCAATATT---TGCAACGCTAAGATTTCTAAGTCCACATAAGGGTC------------TCCAGA--------------------------------------------CTGTCTGT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190428806 151 - 190850796 TTCCTCTCCTGTGAATTCTCCTACGA-TATGATTGTTTTAAAATGTTGATCCTCAAAAAGTGGGACACGATAATTTAGCAAAACATCATTTTGAGCCAATATT---TTCAACTTTAATATTTCTAAGTGCACTTAAGGGTC------------TACAGA--------------------------------------------CGGTTTTT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87569779 205 - 129401213 TTTCTCTACTAGAAGTTTTCTTATCATTATGATTATTTTAGCATGGTGGTCGTTAAAA----GGACTTGGTGCT--AATAAACCATCATCTTGAGCTAATGATGGCTACAACCCTAAGGTTTCCAAGCCCCTTTAGAGGCCACAGGGTGTTTTTCCAGAGGATTTTAAATTCCTTCTTAATTTGATTTTTGTTTTTAGTTTATGTGtttgt
i mm10.chr8                C 0 I 132
s canFam3.chr16             17862360 149 -  59632846 tttttttactgggaattctcttatca-cttgattatttcacaatattaatcctcAAGAAAGGGAACATAATACTTTAGCAAAGCATTATCTTGAGCTAATACC---TGCAACTCTAAGACTTCTAAGTCCATTTGAGTGCC------------TGGAGG--------------------------------------------GTTTTT--
i canFam3.chr16            I 227 C 0

a score=2533732.000000
s hg38.chr4_KI270925v1_alt    186650 718 +    555799  
s panTro4.chr4             192886999 718 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197986708 722 + 198332218  
i ponAbe2.chr4             C 0 M 633
s nomLeu3.chr7b            113747110 715 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183573622 769 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188956701 700 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178380400 762 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135319866 760 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190428957 706 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87570116 690 - 129401213  
i mm10.chr8                I 132 C 0
s canFam3.chr16             17862509 698 -  59632846  
i canFam3.chr16            C 0 C 0

a score=25738.000000
s hg38.chr4_KI270925v1_alt    187368 9 +    555799 ATCTAAATC
s panTro4.chr4             192887717 9 + 193495092 ACCTAAATC
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113747825 9 + 115148730 ACCTAAAAC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183574391 9 + 184069350 ACCTAAAAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188957401 9 + 189454096 ACCTAAAAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178381162 9 + 178775436 ACCTAAAAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135320626 9 + 135778131 ACCTAAAAC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190429663 9 - 190850796 ACCTAAAAC
i calJac3.chr3             C 0 I 1094
s mm10.chr8                 87570806 9 - 129401213 ACCTCCGGT
i mm10.chr8                C 0 C 0
s canFam3.chr16             17863207 9 -  59632846 ACCTAAAAT
i canFam3.chr16            C 0 C 0
e ponAbe2.chr4             197987430 633 + 198332218 M

a score=774727.000000
s hg38.chr4_KI270925v1_alt    187377 300 +    555799 CCACAAACGCATGTCATCCCACCTGCTATTCGTTTCCGTCAGAGCTGTCACCCAGTGATCTAGAAACGAGAAAGGGGAGCAACAGCTTTGAAAAGAAATGCTACATGGTGGGGAGTGAAGACAGCTATGTGGCTGATAGCTCATGCTCC----TTGTGTTATTTCCACCCCT-TCGGTGGTACTCCATGAATTTCACCCCACATCTGAGAAA-TG-GCTGGTTCAGCAAGCTAACAGCATACAGAT-CCTACTCTTTTCTATTTTAACCA------A-AAAAATTCCTAAGTGGTATTCCTTAAATCTTGAGCAA
s panTro4.chr4             192887726 299 + 193495092 CCACGAACGCATGTCATCCCACCTGCTATTCGTTTCTGTCAGAGCTGTCACCCAGTGATCTAGAAATGAGAAAGGGGA-CAACAGCTTTGAAAAGAAATGCTACATGGTGGGGAGTGAAGGCAGCTATGTGGCTGATAGCTCATGCTCC----TTGTGTTATTTCCACCCCT-TCGGTGGTACTCCATGAATTTCACCCCACATCTGAGAAA-TG-GCTGGTTCAGCAAGCTAACAGCATACAGAT-CCTACTCTTTTCTATTTTAACCA------A-AAAAATTCCTAAGTGGTATTCCTTAAATCTTGAGCAA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113747834 280 + 115148730 CCACAAAGGCATGTCATCCCACCTGCTATTTGTTTCTGCCAGAGCTGTCACCCAGTGATCTAGAAACGAGAAAGGGGAGTGACAGCTTTGAAAAGAAATGCTACATGGTGGGGAGTGAAGGCAGATCTGTGGCTGATAGTTCATGCT-C----TTGTGTTATTTCCACCCCT-TCAGTGGTGCTCCATGAATTTCACCCCACATTGGAGAAA-TG-GCTGGTTCAGCAAGCTAACAGCATACAGATCCCTACTCTTTTCTATTTTAACCA------A-AAAAATTACTGAGTGGT--------------------
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183574400 300 + 184069350 CCACAAGCGCATGTCATCGCACCTGCTGTTTGTTTCTGCCAGAGCCGTCATCCAGTGATCTAGAGATGAGAAAGGGGAGCAACAGCGCTGAAAAGCAATGACGCGTGGTGGGGAGCGAAGGCCGGTCTGGGGCTGAGTGTTCAGGCTCCT-CGTTGTGTTATTTCCGCCCCT-TCGGTGGTGCTCCCTGAACCTCACCCCACATCTGAGAGA-TG-ACCGGTTC----AGCTGACAGCACACAGATCTCTACTCTTTTCTATTTTAAACA------A-AAAAACTACTAAGTGGTATTCCTCAGATCTTGAGCAA
i rheMac3.chr5             C 0 I 11
s macFas5.chr5             188957410 300 + 189454096 CCACAAGCGCATGTCATCGCACCTGCTGTTTGTTTCTGCCAGAGCCGTCATCCAGTGATCTAGAGACGAGAAAGGGGAGCAACAGCGCTGAAAAGCAATGACGCGTGGTGGGGAGCGAAGGCCGGTCTGGGGCTGAGCGTTCAGGCTCCT-CGTTGTGTTATTTCCGCCCCT-TCGGTGGTGCTCCCTGAACCTCACCCCACATCTGAGAGA-CG-ACCGGTTC----AGCTGACAGCACACAGATCTCTACTCTTTTCTATTTTAAACA------A-AAAAACTACTAAGTGGTATTCCTCAGATCTTGAGCAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178381171 300 + 178775436 CCACAAGCGCATGTCATCGCACCTGCTGTTGGTTTCTGCCAGAGCCGTCATCCAGTGATCTAGAGACGAGAAAGGGGAGCAACAGCGCTGAAAAGCAATGACGCGTGGTAGGGAGCAAAGGCCGGTCTGGGGCTGAGCGTTCAGGCTCCT-TGTTGTGTTATTTCCGTCCCT-TCGGTGGTGCTCCCTGAACTTCACCCCACATCTGAGAAA-CA-GCCGGTTC----AGCTGACAGCACACAGATCTCtactcttttctattttaaaca------a-aaaaactactaaGTGGTATTCCTCAGATCTTGAGCAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135320635 300 + 135778131 CCACAAGCGCATGTCATCGCACCTGCTGTTCGTTTCTGCCAGAGCCGTCATCCAGTGATCTAGAGACGAGAAAGGGGAGCAACAGCGCTGAAAAGCAATGACGCATGGTGGGGAGCGAAGGCCGGTCTGGGGCTGAGCGTTCAGGCTCCT-TGTTGTGTTCTTTCCACCCCT-TCGGTGGTGCTCTCTGAACTTCACCCCGCATCTGAGAAA-CA-GCTGGTTC----AGCTGACAGCACACAGATCTCTACTCTTTTCTATTTTAAACA------A-AAAAACTACTAAGTGGTATTCCTCAGATCTTGAGCAA
i chlSab2.chr7             C 0 I 11
s calJac3.chr3             190430766 286 - 190850796 CCACAAACACGTGCCATCTCACCTGCTATTCTTTTCAGCCAGAGCTGTCATCCAATGAGCC-GAGGCGAGAAAAAGGAGCAGCAGCTTTTAAACGAACTGATACATGATGGGGAGTAAAGGCAGGTCTGTTGCTGAGAGTTTGTGCTCCT-TGTCGTGCTATTCCC-CTGCT-TAGGTGGTGCTCCGTGAACTTCACCCCACTTCTCAGCA-----------------TGCTAACAGCATACAGATTTCTACTCTTTCCTGTTTTAAAC-------G-AAAAATCATTAAGTGGTATCCCTTAAATCTTCAGCAA
i calJac3.chr3             I 1094 C 0
s mm10.chr8                 87570815 310 - 129401213 CCACAAATACATGCCATCCCACCTGCTATTTGTTTCTGCCAGAGCTGTCATCCGATGATCTAGAGATGAGAAAGGGGAATGGCAGCTTTTACAAGAAGTAATAAC--GTGTGGTGTAAAGCTGTGTCTGCTGCTGAAAGACCATGCTCTG-TGTCGAGTTATTTCCATCCTTGTACGCAGTGCTCTGTTAACTCCACCACACCACCAGGAAACTC-ACAGGTTTGTCAAGCTGATGGCATGCACATTTCTGCCTTTTTCTATTTCAAACAGAGAAGA-GAAATTTCTTCACCGGTGTTTCTTAAATCCTGAGCAG
i mm10.chr8                C 0 C 0
s canFam3.chr16             17863216 306 -  59632846 CCACAAATACATGTCATCCCACCTGCTATTTGTTTCTGCCAGAGCTGTCATCCAGTGATCTGGAGATGAGAAAGGGGAGCAAGAGCTTTTACAAGAAGTAATAAT--GTGTGGTGTGAAATTGTGTCTGTTGCTGAAAGGCCATATTCCTGTGCAGCATTATTTCCATCCCTTTAGGTGGTATCTCATGAACTTCAGCACTTATCTGGGAAA-CACACTGGTTCAGCAAGCTAACAGCATGCGGATTTCTACTCTTTTCTGTTTGAAACA------AGAAAAATGATTAAGCTGTATTCCTTAAATCTTGAGCAA
i canFam3.chr16            C 0 C 0
e ponAbe2.chr4             197987430 633 + 198332218 M

a score=474.000000
s hg38.chr4_KI270925v1_alt    187677 1 +    555799 C
s panTro4.chr4             192888025 1 + 193495092 C
i panTro4.chr4             C 0 C 0
s macFas5.chr5             188957710 1 + 189454096 T
i macFas5.chr5             C 0 I 10
s papAnu2.chr5             178381471 1 + 178775436 T
i papAnu2.chr5             C 0 I 10
s calJac3.chr3             190431052 1 - 190850796 T
i calJac3.chr3             C 0 I 10
s mm10.chr8                 87571125 1 - 129401213 C
i mm10.chr8                C 0 I 654
s canFam3.chr16             17863522 1 -  59632846 T
i canFam3.chr16            C 0 C 0
e chlSab2.chr7             135320935 11 + 135778131 I
e rheMac3.chr5             183574700 11 + 184069350 I
e nomLeu3.chr7b            113748114 0 + 115148730 C
e ponAbe2.chr4             197987430 633 + 198332218 M

a score=6890.000000
s hg38.chr4_KI270925v1_alt    187678 31 +    555799 TACGATTCCTTAAATCTTGAGCAAATCTTGA
s panTro4.chr4             192888026 31 + 193495092 TACGATTCCTTAAATCTTGAGCAAATCTTGA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113748114 27 + 115148730 ----ATTCCTTGAATCTTGAGCAAATCTTGA
i nomLeu3.chr7b            C 0 C 0
s canFam3.chr16             17863523 12 -  59632846 -------------------AGCACACACTGA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87571126 654 - 129401213 I
e calJac3.chr3             190431053 10 - 190850796 I
e chlSab2.chr7             135320935 11 + 135778131 I
e papAnu2.chr5             178381472 10 + 178775436 I
e macFas5.chr5             188957711 10 + 189454096 I
e rheMac3.chr5             183574700 11 + 184069350 I
e ponAbe2.chr4             197987430 633 + 198332218 M

a score=204710.000000
s hg38.chr4_KI270925v1_alt    187709 74 +    555799 GAAAACTATGTCGTACTAAAAATAAAAAGGTATTCTCCTGGGAAGTGGGCCCTATGTCTATTAAACATACTTAG
s panTro4.chr4             192888057 74 + 193495092 GAAAACTATGTCCTACTAAAAATAAAAAGGTATTCTCCTGGGAAGTGGGCCCTATGTCTATTAAACATACTTAG
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113748141 74 + 115148730 GAAAACTATGTCCTACTAAAAATAAAAAGGTATTCTCCTGGGAAGTGGGCCTTATGTCTATTAAAGATACTTAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183574711 74 + 184069350 GAAAACTATGTCCTACTGAAAGTAAGAAGGTATTCTCCTGGGAAGTGGGCCCTATGTCTATTACACATACTTAG
i rheMac3.chr5             I 11 C 0
s macFas5.chr5             188957721 74 + 189454096 GAAAACTATGTCCTACTGAAAGTAAGAAGGTATTCTCCTGGGAAGTGGGCCCTATGTCTATTACACATACTTAG
i macFas5.chr5             I 10 C 0
s papAnu2.chr5             178381482 74 + 178775436 GAAAACTATGTCCTACTGAAAGTAAAAAGGTATTCTCCTGGGAAGTGGGCCCTATGTCTATTACACATACTTAG
i papAnu2.chr5             I 10 C 0
s chlSab2.chr7             135320946 74 + 135778131 GAAAACTATGTCCTACTGAAAGTCAAAAGGTATTCTCCTGGGAAGTGGGCCCTATGTCTATTACACATACTTAG
i chlSab2.chr7             I 11 C 0
s calJac3.chr3             190431063 74 - 190850796 GAAAGCTGTATCCTACTTAAAATAAAAAGATATTCTCCTGGGAAGCAGGCCCTATGTCTGTTACACATACTTGG
i calJac3.chr3             I 10 C 0
s canFam3.chr16             17863535 72 -  59632846 --AAAATATGTTCTAGTAAAAATAAAAATGTAGTTTCCTAGGAAGTAGGCTGTAGACCTATTAAACATGCTTAG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87571126 654 - 129401213 I
e ponAbe2.chr4             197987430 633 + 198332218 M

a score=3142985.000000
s hg38.chr4_KI270925v1_alt    187783 944 +    555799  
s panTro4.chr4             192888131 944 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197988063 943 + 198332218  
i ponAbe2.chr4             M 633 C 0
s nomLeu3.chr7b            113748215 944 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183574785 979 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188957795 979 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178381556 975 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135321020 977 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190431137 948 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17863607 930 -  59632846  
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87571126 654 - 129401213 I

a score=23756.000000
s hg38.chr4_KI270925v1_alt    188727 8 +    555799 TGTTCCTA
s panTro4.chr4             192889075 8 + 193495092 TGTTCCTA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113749159 8 + 115148730 TGTTCCTA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183575764 8 + 184069350 TGTTCCTA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188958774 8 + 189454096 TGTTCCTA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178382531 8 + 178775436 TGTTCCTA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135321997 8 + 135778131 TGTTCCTA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190432085 8 - 190850796 TGTTCCAA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17864537 8 -  59632846 TGTTACTA
i canFam3.chr16            C 0 I 64
e mm10.chr8                 87571126 654 - 129401213 I
e ponAbe2.chr4             197989006 0 + 198332218 C

a score=16044.000000
s hg38.chr4_KI270925v1_alt    188735 6 +    555799 AGCATG
s panTro4.chr4             192889083 6 + 193495092 AGCATG
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113749167 6 + 115148730 AGCATG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183575772 6 + 184069350 AGCATG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188958782 6 + 189454096 AGCATG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178382539 6 + 178775436 AGCATG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135322005 6 + 135778131 AGCATG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190432093 6 - 190850796 AGCATG
i calJac3.chr3             C 0 T 68
e mm10.chr8                 87571126 654 - 129401213 I
e canFam3.chr16             17864545 64 -  59632846 I
e ponAbe2.chr4             197989006 0 + 198332218 C

a score=10894.000000
s hg38.chr4_KI270925v1_alt    188741 5 +    555799 AAGGA
s panTro4.chr4             192889089 5 + 193495092 AAGGA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113749173 5 + 115148730 AAGGA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183575778 5 + 184069350 AAGGA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188958788 5 + 189454096 AAGGA
i macFas5.chr5             C 0 T 68
s papAnu2.chr5             178382545 5 + 178775436 AAAGA
i papAnu2.chr5             C 0 T 68
s chlSab2.chr7             135322011 5 + 135778131 AAGGA
i chlSab2.chr7             C 0 T 68
s calJac3.chr3             190432031 5 - 190850796 AACGA
i calJac3.chr3             T 68 C 0
e mm10.chr8                 87571126 654 - 129401213 I
e canFam3.chr16             17864545 64 -  59632846 I
e ponAbe2.chr4             197989006 0 + 198332218 C

a score=109658.000000
s hg38.chr4_KI270925v1_alt    188746 72 +    555799 CCATGAAAGGCACGCAGGCTCTGGTTTGCATAGTGAAGATGAGCGACCGTGTTCCTAAGCATGAAGGACCAC
s panTro4.chr4             192889094 72 + 193495092 CCACGAAAGGCATGCAGGCTCTGGTTTGCATAGTGTGGATGAGCGACTGTGTCCCTAAGCATGAAGGACCAC
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113749178 72 + 115148730 CCACGAAAGGCCTGCAGGCTCTGGTTTGCACAGTGAAGATGAGCGACCGTGTTCCTAAGCATGAAGGACCAC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188958725 72 + 189454096 CCACGAAAGGCACGCAGGCTCTGGTGTGTGTAGTGAAGATGAGTGACCATGTTCCTAAGCATGAAGGACCAC
i macFas5.chr5             T 68 C 0
s papAnu2.chr5             178382482 72 + 178775436 CCACGAAAGGCATGCAGGCTCTGGTGTGTGTAGTGAAGACGAGTGACTGTGTTCCTAAGCATGAAAGACCAC
i papAnu2.chr5             T 68 C 0
s chlSab2.chr7             135321948 72 + 135778131 CCATGAAAAGCACACAGGCTCTGGTCTGCGTAGTGAAGACGAGCAACCGTGTTCCTAAGCATGAAGGACCAC
i chlSab2.chr7             T 68 T 4
s calJac3.chr3             190432036 72 - 190850796 CAACTAAAGCCAGGTAGGCTCTGGTTTGCTTCGTGAAGGCAAACGACCATGTTCCAAAGCATGGCAGACCAC
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87571126 654 - 129401213 I
e canFam3.chr16             17864545 64 -  59632846 I
e rheMac3.chr5             183575783  0 + 184069350 C
e ponAbe2.chr4             197989006  0 + 198332218 C

a score=5598.000000
s hg38.chr4_KI270925v1_alt    188818 6 +    555799 GAAAGG
s panTro4.chr4             192889166 6 + 193495092 GAAAGG
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113749250 6 + 115148730 GAAAGG
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188958797 6 + 189454096 GTGAGG
i macFas5.chr5             C 0 T 68
s papAnu2.chr5             178382554 6 + 178775436 GTGAGG
i papAnu2.chr5             C 0 T 68
s calJac3.chr3             190432108 6 - 190850796 GTGAGG
i calJac3.chr3             C 0 T 15
e mm10.chr8                 87571126 654 - 129401213 I
e canFam3.chr16             17864545 64 -  59632846 I
e chlSab2.chr7             135322020 4 + 135778131 T
e rheMac3.chr5             183575783 0 + 184069350 C
e ponAbe2.chr4             197989006 0 + 198332218 C

a score=34311.000000
s hg38.chr4_KI270925v1_alt    188824 48 +    555799 CATGCAGGCTCTGGTTTGCATAGTGTGGATGAGCGACTGTGTCCCTAA
s panTro4.chr4             192889172 46 + 193495092 CATGCAGGCTCTGGTTTGCGTAGTGAAGATGAGTG--TCTGTTCCTAA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113749256 48 + 115148730 CATGCAGGCTCTGGTTTGCACAGTGAAGATGAGCGACCGTGTTCCTAA
i nomLeu3.chr7b            C 0 T 68
s macFas5.chr5             188958735 48 + 189454096 CACGCAGGCTCTGGTGTGTGTAGTGAAGATGAGTGACCATGTTCCTAA
i macFas5.chr5             T 68 C 0
s papAnu2.chr5             178382492 48 + 178775436 CATGCAGGCTCTGGTGTGTGTAGTGAAGACGAGTGACTGTGTTCCTAA
i papAnu2.chr5             T 68 C 0
e mm10.chr8                 87571126 654 - 129401213 I
e canFam3.chr16             17864545 64 -  59632846 I
e calJac3.chr3             190432114 15 - 190850796 T
e chlSab2.chr7             135322020  4 + 135778131 T
e rheMac3.chr5             183575783  0 + 184069350 C
e ponAbe2.chr4             197989006  0 + 198332218 C

a score=16135.000000
s hg38.chr4_KI270925v1_alt    188872 20 +    555799 GCATGAAGGACCACGAAAGG
s panTro4.chr4             192889218 20 + 193495092 GCATGAAGGACCATGAAAGG
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113749236 20 + 115148730 GCATGAAGGACCACGAAAGG
i nomLeu3.chr7b            T 68 C 0
s macFas5.chr5             188958783 20 + 189454096 GCATGAAGGACCACGTGAGG
i macFas5.chr5             C 0 T 68
s papAnu2.chr5             178382540 20 + 178775436 GCATGAAAGACCACGTGAGG
i papAnu2.chr5             C 0 T 68
e mm10.chr8                 87571126 654 - 129401213 I
e canFam3.chr16             17864545 64 -  59632846 I
e calJac3.chr3             190432114 15 - 190850796 T
e chlSab2.chr7             135322020  4 + 135778131 T
e rheMac3.chr5             183575783  0 + 184069350 C
e ponAbe2.chr4             197989006  0 + 198332218 C

a score=29604.000000
s hg38.chr4_KI270925v1_alt    188892 37 +    555799 CATGCAGGCTCTGGTTTGCGTAGTGAAGATGAGTGTC
s panTro4.chr4             192889238 37 + 193495092 CATGCAGGCTCTGGTTTGCGTAGTGAAGATGAGTGTC
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113749256 37 + 115148730 CATGCAGGCTCTGGTTTGCACAGTGAAGATGAGCGAC
i nomLeu3.chr7b            C 0 I 2
s macFas5.chr5             188958735 37 + 189454096 CACGCAGGCTCTGGTGTGTGTAGTGAAGATGAGTGAC
i macFas5.chr5             T 68 I 2
s papAnu2.chr5             178382492 37 + 178775436 CATGCAGGCTCTGGTGTGTGTAGTGAAGACGAGTGAC
i papAnu2.chr5             T 68 I 2
e mm10.chr8                 87571126 654 - 129401213 I
e canFam3.chr16             17864545 64 -  59632846 I
e calJac3.chr3             190432114 15 - 190850796 T
e chlSab2.chr7             135322020  4 + 135778131 T
e rheMac3.chr5             183575783  0 + 184069350 C
e ponAbe2.chr4             197989006  0 + 198332218 C

a score=11325.000000
s hg38.chr4_KI270925v1_alt    188929 8 +    555799 TGTTCCTA
s panTro4.chr4             192889275 8 + 193495092 TGTTCCTA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197989006 8 + 198332218 TGTTCCTA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113749295 8 + 115148730 TGTTCCTA
i nomLeu3.chr7b            I 2 I 1
s macFas5.chr5             188958774 8 + 189454096 TGTTCCTA
i macFas5.chr5             I 2 C 0
s papAnu2.chr5             178382531 8 + 178775436 TGTTCCTA
i papAnu2.chr5             I 2 C 0
e mm10.chr8                 87571126 654 - 129401213 I
e canFam3.chr16             17864545 64 -  59632846 I
e calJac3.chr3             190432114 15 - 190850796 T
e chlSab2.chr7             135322020 4 + 135778131 T
e rheMac3.chr5             183575783 0 + 184069350 C

a score=910.000000
s hg38.chr4_KI270925v1_alt    188937 1 +    555799 A
s panTro4.chr4             192889283 1 + 193495092 A
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197989014 1 + 198332218 A
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             188958782 1 + 189454096 A
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178382539 1 + 178775436 A
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87571126 654 - 129401213 I
e canFam3.chr16             17864545 64 -  59632846 I
e calJac3.chr3             190432114 15 - 190850796 T
e chlSab2.chr7             135322020 4 + 135778131 T
e rheMac3.chr5             183575783 0 + 184069350 C
e nomLeu3.chr7b            113749303 1 + 115148730 I

a score=10805.000000
s hg38.chr4_KI270925v1_alt    188938 8 +    555799 GCATGAAG
s panTro4.chr4             192889284 8 + 193495092 GCATGAAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197989015 8 + 198332218 GCATGAAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113749304 8 + 115148730 GCATGAAG
i nomLeu3.chr7b            I 1 C 0
s macFas5.chr5             188958783 8 + 189454096 GCATGAAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178382540 8 + 178775436 GCATGAAA
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87571126 654 - 129401213 I
e canFam3.chr16             17864545 64 -  59632846 I
e calJac3.chr3             190432114 15 - 190850796 T
e chlSab2.chr7             135322020 4 + 135778131 T
e rheMac3.chr5             183575783 0 + 184069350 C

a score=2781.000000
s hg38.chr4_KI270925v1_alt    188946 2 +    555799 GA
s panTro4.chr4             192889292 2 + 193495092 GA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197989023 2 + 198332218 GA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113749312 2 + 115148730 GA
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188958791 2 + 189454096 GA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178382548 2 + 178775436 GA
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190432099 2 - 190850796 GC
i calJac3.chr3             T 15 C 0
e mm10.chr8                 87571126 654 - 129401213 I
e canFam3.chr16             17864545 64 -  59632846 I
e chlSab2.chr7             135322020 4 + 135778131 T
e rheMac3.chr5             183575783 0 + 184069350 C

a score=2386.000000
s hg38.chr4_KI270925v1_alt    188948 3 +    555799 GGA
s panTro4.chr4             192889294 3 + 193495092 GGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197989025 3 + 198332218 GGA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113749314 3 + 115148730 GGA
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190432101 3 - 190850796 AGA
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87571126 654 - 129401213 I
e canFam3.chr16             17864545 64 -  59632846 I
e chlSab2.chr7             135322020 4 + 135778131 T
e papAnu2.chr5             178382550 0 + 178775436 C
e macFas5.chr5             188958793 0 + 189454096 C
e rheMac3.chr5             183575783 0 + 184069350 C

a score=127396.000000
s hg38.chr4_KI270925v1_alt    188951 47 +    555799 CCACATGAGGATCCT---GGACACCTACTGCATGAATGTATTCGCCCTTT
s panTro4.chr4             192889297 47 + 193495092 CCACATGAGGATCCT---GGACACCTACTGCATGAATGTATTCGCCCTTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197989028 47 + 198332218 CCACATGAGGATCCT---GGACACCTACTGCATGAATGTATTAGCCCTTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113749317 47 + 115148730 CCACATGAGGATCCC---GGACACCTACTGCATGAATGTGTTAGCCCTTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183575783 47 + 184069350 CCACGTGAGGATCCC---GGACACCTACTGCATGAATGTATTAGCCCTTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188958793 47 + 189454096 CCACGTGAGGATCCC---GGACACCTACTGCATGAATGTATTAGCCCTTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178382550 47 + 178775436 CCACGTGAGGATCCC---GGACACCTACTGCATGAATGTATTAGCCCTTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135322016 47 + 135778131 CCACATGAGGATCCC---GGACACCTACTGCATGAATGTATTAGCCCTTT
i chlSab2.chr7             T 4 C 0
s calJac3.chr3             190432104 32 - 190850796 CCACGTGAGGGTCCCTGAGGACACCTACTGCA------------------
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87571126 654 - 129401213 I
e canFam3.chr16             17864545 64 -  59632846 I

a score=1091212.000000
s hg38.chr4_KI270925v1_alt    188998 356 +    555799 CAGGTCTAGGGACCTGGTAACCATT-TATTATTTGTACTCTGATTTTCTTCCATTTCTTTCTCCAGTCCATAAATGTAACTTAAGTGACTTATTAACACTGATGGTTTGATCACCAATAG-CAAGTTCCAGTTTCAG-TCTTAGTGTAGGTGCCCTTATTACAGACTTGAGATAAAGTCCAAGGCTAACCACTCTTACAAGTTTACA--CTTTGCTAAAGGGTACCTTGGGACAGAGGGAGTGCAGAGCAGAGAAAACCTACCTGTGCAACTGAGAAGGCCGCTCAGGCCACGGGGACAGGGCAGGAATGCTCTCAGGAGTGTCCCCTGCACCTGAACTTGATTTCACGCCATCACCTTCC
s panTro4.chr4             192889344 356 + 193495092 CAGGTCTAGGGACCTGGTAACCATT-TATTATTTGTACTCTGATTTTCTTCCATTTCTTTCTCCAGTCCATAAATGTAACTTAAGTGACTTATTAACACTGATAGTTTGATCACCAATAG-CAAGTTCCAGTTTCAG-TCTTAGTGTAGGTGCCCTTATTACAGACTTGAGATAAAGTCCAGGGCTAACCACTCTTACAAATTTACA--CTTTGCTAAAGGGTACCTTGGGACAGAGGGAGTGCAGAGCAGAGAAAACCTACCTGTGCAACTGAGAAGGCCGCTCAGGCCACGGGGACCGGGCAGGAATGCTCTCAGGAGTGTCCTCTGCACCTGAACTTGATTTCACGCCATCACCTTCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197989075 356 + 198332218 CAGGTCTAGGGACCTGGTAACCATT-TATTATTTGTACTCTGATTTTCTTCCATTTCTTTCCCCAGTCCATAAATGTAACTTATGTGACTTACTAACACTGATAGTTTGATCACCAATAG-CAAGTTCTAGTTTCAG-TCTTAGTGTTGGTGCCCTTACTACAGACTTGAGATAAAGTCCAGGGCTAACCACTCTTACAAATTTACA--CTTTGCTAAAGGGTACCTTGGGAAAGAGGGAGTGCAGAGCAGAGAAAACCGGCCTGTGCAACTGAGAAGGCCGCTCAGGCCACAGGGACAGGGCAGGAACGCTCTCAGGAGTGTCCCCTGCACCTGAACTTGATTTCACCCCATCGCTTTCC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113749364 355 + 115148730 CAGGTCTAGGGACCTGGTAACCATT-TATTACTTGTACTCTGATTTTCTTCCATTTCTTTCTCCAGTCCATAAATGTAATTTATGTGACTTATTCACACTGATGGTTTGATCACCAACAG-AAAGTTCTAGTTTCAG-TCCTAGTGTTGGTGCCCTCACTACAGACTTGAGATAAAGTCCAGGGCTAACCGCTCTTACAGATTTACA--CTTTGCTAAAGGGTACCTTGGGAGAGAGGGAGCACAG-GCAGAGAAAACCTACCTGTGCAATTGAGAAGGCTGCTCAGGCCACGGGGACAGGGCAGGAACGCTCTCAGGAGTGTCCCCTGCACCTGAACTTGATTTCATGCCATCGCCTTCA
i nomLeu3.chr7b            C 0 I 6945
s rheMac3.chr5             183575830 355 + 184069350 CAGGTCTAGGGACCTGGTAACCCTT-CATTACTTATACTCTGACTTTCTTCCACTTCTTTCCCCAGTCCATAAGTGTAACTTAGGTGACTTATTAACCCTGACAGTTTGATCAACAATAG-TAAGCTCTAGTTTCAG-GCCTAGTGTTGGTCCCCCTACTGCAGACATGGGATAAAGTCAAGGGCTAACCACCCTTACAAATTTACA--CGTTTCTAAAGGGTGCCTTGGGAGAGAGGGAGTGCAGAGCAGAGAAAACCTACCTGTGCAACTGACAAGGCCACTCAGGCCACGGGGACAGAGCAGGAATGCTCTCAGGAGTGTCCCCTGCACCTGAACTTGATTTC-TGCCTTCGCCTTCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188958840 355 + 189454096 CAGGTCTAGGGACCTGGTAACCCTT-CATTACTTATACTCTGACTTTCTTCCACTTCTTTCCCCAGTCCATAAATGTAACTTAGGTGACTTATTAACCCTGACGGTTTGATCAACAATAG-TAAGCTCTAGTTTCAG-GCCTAGTGTTGGTCCCCCTACTGCAGACATGGGATAAAGTCAAGGGCTAACCACCCTTACAAATTTACA--CGTTTCTAAAGGGTGCCTTGGGAGAGAGGGAGTGCAGAGCAGAGAAAACCTACCTGTGCAACTGACAAGGCCACTCAGGTCACGGGGACAGAGCAGGAATGCTCTTAGGAGTGTCCCCTGCACCTGAATTCGATTTC-TGCCTTCGCCTTCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178382597 355 + 178775436 CAGGTCTAGGGACCTGGTAACCCTT-CATTACTTGTACTCTGACTTTCTTCCACTTCTTTCCCCAGTCCATAAATGTAACTTATGTGACTTATTAACCCTGACGGTTTGATCAACAATAG-TAAGCTCTAGTTTCAG-TCCTAGTGTTGGTGCCCCTACTGCAGACATGGGATAAAGTCAAGGGCTAACCACCCTTACAAATTTACA--TGTTTCTAAAGGGTGCCTTGGGAGAGAGGGAGTGCAGAGCAGAGAAAACCTACCTGTGCAACTAACAAGGCCACTCAGGCCACAGGGACAGAGCAGGAATGCTCTCAGGAGTGTCCCCTGCACCTGAACTCGATTTC-TGCCATCGCCTTCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135322063 352 + 135778131 CAGGTCTAGGGACCTGGTAACCCTT-CATTACTTGTACTCTGACTTTCTTCCACTTCTTTCCCCAGTCCATAAATGTAACTTATGTGACTTATTAACCCTGACGGTTTGATCAACAATAG-TAAGCTCTAGTTTCAG-TCCTAGTGTTGGTGCCC---ATGCAGACATGGGATAAAGTCAAGGGCTAACCACCCTTACAAATTTACA--CTTTTCTAAAGGGTGCCTTGGGAGAGAGGGAGTGCAGAGCAGAGAAAACCTACCTGTGCAACTGACAAGGCCACTCAGGCCACGGGGACAGAGCAGGAATGCTCTCAGGAGTGTCCCCTGCACCTGAACTCGATTTC-TGCCATCGCCTTCT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190432136 346 - 190850796 ---------GGACCTGGTAAGCCTCGTGTTACTT-TATTCTGATTGTCTTCCATTTACTTCCCTAGTCCTTAAATGTAATTTATGTGACTTATTAACACTGAGGGTTTGCTCACCAGTAG-CAAGTTCTAGTTTCAG-TCCTGGCGTTGGTGCCCATACTACTGACTTGAGACAAAATCAAGGGTTATTCACCCTTACAAATTTACA--CTTTGCTAAAAGGTA-CTTGGGAGAGAGGGAGTGCAGAGCAGAAACAACCTATCTGTGCAGCTGAGAAGGTCACTCGGGCTACGGGGACAGCGAGGGGACATTCTCAGGAGTATCCCATGCACCTGAACTTGCTTTCATGCAATCACCTTCT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17864609 337 -  59632846 CAGGCCCAGCGACCTGGTAATCCTC------------------TTCCCTTCCATTTCTTTCCTCAGTCCTTCAGTGTAATTTATGTGGCTTATTGACACAGATGGTTTGAGC-CCAATAGTCAAGGTCCAGTTCTAGTTCCTTGTGTTGGGGCCT-TACTACAGATTTGAGATGGAGTGAAGTGCTA-CAAGCCTCACAACTTCACACCCTGTGTCAAGTGGGACTTGGAGACAGAGTCTATAGAGAGCAGGACAAATCAACCTGTGCAAATAGAAAAACTGCTCAGGACACAAGGCCAGAGCAGGAATGTACTCAAGA-TATCACACACACCTGAACTTGATTTTATACTGTTACCTT--
i canFam3.chr16            I 64 C 0
e mm10.chr8                 87571126 654 - 129401213 I

a score=26435.000000
s hg38.chr4_KI270925v1_alt    189354 13 +    555799 GCCTCTTAACCAG---
s panTro4.chr4             192889700 13 + 193495092 GCCTCTTAACCAG---
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197989431 13 + 198332218 GCCTCTTAACCAG---
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113756664 13 + 115148730 GCCTCTTAGCCAG---
i nomLeu3.chr7b            I 6945 C 0
s rheMac3.chr5             183576185 13 + 184069350 GCCTCCTACCCAG---
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188959195 13 + 189454096 GCCTCCTACCCAG---
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178382952 13 + 178775436 GCCTCTTACCCAG---
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135322415 13 + 135778131 ACCTCCTACCCAG---
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190432482 13 - 190850796 GCCTCTGAACTGA---
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17864946  5 -  59632846 -----------AGAAG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87571126 654 - 129401213 I

a score=1773782.000000
s hg38.chr4_KI270925v1_alt    189367 534 +    555799  
s panTro4.chr4             192889713 534 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197989444 534 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113756677 534 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183576198 519 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188959208 519 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178382965 519 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135322428 515 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190432495 495 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87571780 507 - 129401213  
i mm10.chr8                I 654 I 136
s canFam3.chr16             17864951 504 -  59632846  
i canFam3.chr16            C 0 C 0

a score=142919.000000
s hg38.chr4_KI270925v1_alt    189901 42 +    555799 GATTTTCAAATGCTGTAATTCCTAAAAATAATATCTAGGCTG
s panTro4.chr4             192890247 42 + 193495092 GATTTTCAAATGCTGTAATTCCTAAAAATAATATCTAGGCTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197989978 42 + 198332218 GATTCTCAAACGCTGTAATTTCTAAAAATAATATCTAGGCTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113757211 42 + 115148730 GATTTTCAAATGCTGTAATTACTAAAAATAATATCTAGGCTG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183576717 42 + 184069350 GATTTTCAAATGCTGTAATTTCTAAAAATAATATCTAGGCTG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188959727 42 + 189454096 GATTTTCAAATGCTGTAATTTCTAAAAATAATATCTAGGCTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178383484 42 + 178775436 GATTTTCAAATGCTgtaatttccaaaaataatatCTAGGCTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135322943 42 + 135778131 GATTTTCAAATGCTGTAATTTCTAAAAATAATATCTAGGCTG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190432990 41 - 190850796 GATTTACAAATGCTGTAATTTTT-AAAATAATATCTAGGTTG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17865455 42 -  59632846 TACTTTCAAATACTGTGATTTTAAAATATAATAAATAGGCAT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87572287 136 - 129401213 I

a score=2052391.000000
s hg38.chr4_KI270925v1_alt    189943 574 +    555799  
s panTro4.chr4             192890289 573 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             197990020 574 + 198332218  
i ponAbe2.chr4             C 0 M 30000
s nomLeu3.chr7b            113757253 575 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183576759 573 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188959769 573 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178383526 575 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135322985 575 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190433031 574 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87572423 614 - 129401213  
i mm10.chr8                I 136 I 68
s canFam3.chr16             17865497 540 -  59632846  
i canFam3.chr16            C 0 C 0

a score=604449.000000
s hg38.chr4_KI270925v1_alt    190517 196 +    555799 ACAATGATATATATCTACCAAAGTTGGCTG-----GAATACCCGGCTGGTGTCCC--AGTCAGGAAACACAGGAAAAGGTTACATCTGTAG-AAAGAAAA-----------A---------CAGCTTGTTAAGCAAAACAATGCA--GTTAAAAACCAAGCTCACTGTAAG-AAATGCCGCGTGGGCCA-GTGGGGACGGCCATGCCGAAAGCGCTCAGTGCTCCTGA--
s panTro4.chr4             192890862 196 + 193495092 ACAATGATATATATCTACCAAAGTTGGCTA-----GAATACCCGGCTGGTGTCCC--AGTCAGGAAACACAGGAAAAGGTTACATCCATAG-AAAGAAAA-----------A---------CAGCTTGTTAAGCAAAACAATGCA--GTTAAAAACCAAGCTCACTGTAAG-AAATGCCACGTGGGCCA-GTGGGGACGGCCATGCCAAAAGCGCTCAGTGCTCCTGA--
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4_random        3801935 197 -  23176937 ACAATTATATATATATACCAAAGTTGGCTA-----GAATACCCGGCTGGTGTCCC--AGTCAGGAAACACAGGAAAAGGTTACATCTGTAGAAAAAAAAA-----------A---------CAGCTTGTTAAGCAAAACAATGCA--GTTAAAAACCAAGCTCACTATAAG-AAATGCCGTGTGGGCCA-GTGGGGATGGCCATGCTGAAAGCGCTCGGTGCTCCTGA--
i ponAbe2.chr4_random      n 0 C 0
s nomLeu3.chr7b            113757828 204 + 115148730 ACAATGATATGTATCTACCAAAGTTGGCTA-----GAATACCCGGCTGGTGTCCC--AGTCAGGAAACACAGGGAAAGGTTACATCTGTAG-aaaaaaaa-----------aaaaaaaaaCCAGCTTGTTAAGCAAAACAATGCG--GTTAAAACCCAAGCTCACTGTACG-ATACACCGTGT-GGCCA-GTGGGGACGGCCACTGGGAAAGCGCTCAGTGCTCCAGG--
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183577332 196 + 184069350 ACAGTGATATATATCTACCAAAGTTAGCTA-----GAATACCCGGCTGGTGTCCC--AGTCAGGAAACACAGGAAAAGGTTACATCTGTAG-GGAAAAAA-----------A---------AAACTTGTTACGCAAAACGATGCA--GTTAAAAACCAAGCTCACTGTAAG-AAATGCCGTGTGGGCCA-GAGGGGACTGTCATGTCGAAAGTGCTTGGTGTTCCTGA--
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188960342 195 + 189454096 ACAGTGATATATATCTACCAAAGTTAGCTA-----GAATACCCGGCTGGTGTCCC--AGTCAGGAAACACAGGAAAAGGTTACATCTGTAG-GG-AAAAA-----------A---------AAACTTGTTACGCAAAACGATGCA--GTTAAAAACCAAGCTCACTGTAAG-AAATGCCGTGTGGGCCA-GAGGGGACTGTCATGTCGAAAGTGCTCGGTGTTCCTGA--
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178384101 204 + 178775436 ACAGTGATATATATCTACCAAAGTTAGCTA-----GAATACCCGGCTGGTGTCCC--AGTCAGGAAACACAGGAAAAGGTTacatctgtag-gaaaaaaa---aaaaaaaca---------aaacttgttaCGTGAAACGATGCA--GTTAAAAACCAAGCTCACTGTAAG-AAATGCCGTGTGGGCCA-GAGGGGACTGTCATGTCGAAAGTGCTCGGTGTTCCTGA--
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135323560 207 + 135778131 ACAGTGATATGTATCTACCAAAGTTAGCTA-----GAATACCCAGCTGGTGTCCC--AGTCAGGAAACACAGGAAAAGGTTACATCTGTAG-Gaaaaaaaaacaaaaaaaaa---------aaaCTTGTTACGCAAAACGATGCA--GTTAAAAACCAAGCTCACTGTAAG-AAATGCCATGTGGGCCA-GAGGGGACTGTCATGTCGAAAGTGCTCGGTGTTCCTGA--
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190433605 192 - 190850796 ACAATGATATATATCTACCAAAGTTAGCTA-----GAATACTCGGCTGGCATCCT--AGTCGGGAAACACAGGAAAAGG-AGCATCTGCAG-AAAAAAAA-----------A---------GAGTTTGTTAAACAAAACAATGCA--GCTAAAGACCAAGCTCACTGTAAG-AAATGCTGTGTGGGTCA-TTGTAGACTGCCA---CGAAAGTGCTCAGTGTCCCTGA--
i calJac3.chr3             C 0 I 919
s mm10.chr8                 87573105 197 - 129401213 agaAGAAAATGGATCCACTAAAGTCAGCTGAGCTCAGATATCTTGCAGATGTCCTCAGGTCAGGAAACAAAATCAGAAGT---GTCTGTCT-GAAACACA-----------A---------GACCTTGTTAAGAAAAAT-ATGTAACATTACCAAC--AGCTCACTGTGAG-ATGTG--ATGTGGACCT-GTGCTAATTGCTGCAACAAAGGTTGTGGGCGTTTGTGT--
i mm10.chr8                I 68 I 8
s canFam3.chr16             17866037 195 -  59632846 CCAATG--ATGGATCTACAAAAGTTATCTG-----GAATACCTCAC--ATGTCCTT-AGTTGGGAAGCAAAAGGAAAGGTTACATCCGTCT-GAAACAAA-----------A---------GAGCTGGTTAAGCAAGA-AATGAA--GCTA-AAATCAAGTTCACCATAAGAAAATGTTATATGAGCCAGGTCTTAATCACCACATCAAAAGTCCTCCATGTTCCTGGAA
i canFam3.chr16            C 0 C 0

a score=4095.000000
s hg38.chr4_KI270925v1_alt    190713 1 +    555799 A
s panTro4.chr4             192891058 1 + 193495092 A
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4_random        3802132 1 -  23176937 A
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113758032 1 + 115148730 A
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183577528 1 + 184069350 A
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188960537 1 + 189454096 A
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178384305 1 + 178775436 A
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135323767 1 + 135778131 A
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87573310 1 - 129401213 A
i mm10.chr8                I 8 C 0
s canFam3.chr16             17866232 1 -  59632846 A
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190433797 919 - 190850796 I

a score=686590.000000
s hg38.chr4_KI270925v1_alt    190714 225 +    555799 GCTGGGTGGCCAGGTGTTT-T-CA-CACAAAAAGGCCTTCCCT------GCTC----GGGCCATGGGATAAGCCTTTGAGTGG----AGACCTAGGAAGGAG-C--TGAAGTCTGCGTTGGGGGTGGAAGGTGGCAATCCCATTAGACAGCTCTCCCTCGTGTGAATTTATGAAGCCCCACGCAGACTGTGACTTTTAAAATAATCACTTAGTTGGTTTTA-GCACATGTCGCAGATTTCATTACA
s panTro4.chr4             192891059 227 + 193495092 GCTGGGTGGCCAGGTGTTT-T-CA-CACACAAAGGCCTTCCCT------GCTC----AGGCCATGGGATAAGCCTTTGAGTGG----AGACCTAGCAAGGAG-CTTTGAAGTCTGCGTTGGGGGTGGAAGGTGGCCATCTCATTAGACAGCTCTCCCTGGTGTGAATTTATGAAGCCCCATGCAGACTGTGACTTTTAAAATAATCACTTAGTTGGTTTTA-GCACATGTCGCAGATTTCATTGCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4_random        3802133 227 -  23176937 GCTGGGTGGCCAGGTGTTT-T-CA-CACACAAAGGCCTTCCCT------GCTC----GGGCCACGGGATAAGCCTTTGAGTGG----AGACCTAGCAAGCAG-CTTTGAAGTCTGCGTTGGGGGTGGAAGGTGGGAATCCCGTTAGACAGCTCTCCCTGGTGTGAATTTATGAAGCCCCATGCAGACTGTGACTTTTAAAATAATCACTTAGTTGGTTTTA-GCACATGTCGCAGATTTCATTACA
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113758033 222 + 115148730 GCTGGGTGGCCAGGTGTTT-TCCA-CACACAGAGGCCTTCCCT------GCTG----GGGCCGT-GGATAAGCCTTTGAGTGG----AGACCTAGCAAGGAG-CTTTGAAGTCTGCGTTGGGGGTGGAAGGTGGGAATCCCGTTAGACAGCTCTCCCTGGTGTGAATTTATGAAGCCCCATGCAGACTGCGACTTTTAAAATAATCACTTAGTTGGTTTTA-GTACATG-----AATTCCACCACA
i nomLeu3.chr7b            C 0 T 6599
s rheMac3.chr5             183577529 230 + 184069350 GCTGGGCGGCCAGGTGTTT-T-AA-CACCCAAAGGCCCTCCCT------GCTC----GGGCCATGGGATAAGCCTCTGAGTGGCTTCAGACCCAGCAAGGAG-CTCTGAAGTCTATGCGGGGGGTGGAGGGTGGGAATCCTGTTAGA-AGCTCTCACTGCTGTGAATTTATGAAGCCCCGTGCACACTGTGACTTTTATAATCATAACTTAGCTGGCTTTA-GCTCACGTTGCAGGTTTCATGACA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188960538 226 + 189454096 GCTGGGCAGCCAGGTGTTT-T-AA-CACCCAAAGGCCCTCCCT------GCTC----GGGCCATGGGATAAGCCTCTGAGTGG----AGACCCAGCAAGGAG-CTCTGAAGTCTATGCGGGGGGTGGAGGGTGGGAATCCTGTTAGA-AGCTCTCACTGCTGTGAATTTATGAAGCCCCGTGCACACTGTGACTTTTATAATCATAACTTAGCTGGCTTTA-GCTCACGTCACAGGTTTCATGACA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178384306 226 + 178775436 GCTGGGCGGCCAGGTGTTT-T-AA-CACACAAAGGCTCTCCCT------GCTC----GGGCCATGGGATAAGCCTCTGAGTGG----AGACCCAGCAAGGAG-CTCTGAAGTCTGTGcggggggtggagggtgggaatcCTGTTAGA-AGCTCTCCCTGCTGTGAATTTGTGAAGCCCCGTGCACACTGTGACTTTTATAATCATAACTTAGCTGGCTTTA-GCTCACGTTGCAGGTTTCATGACA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135323768 227 + 135778131 ACTGGGTGGCCGGGTGTTT-T-AA-CACACAAAGGCCCTCCCT------GCTT---GGGGCCATGGGATAAGCCTCTGAGTGG----AGACCCAGCAAGGAG-CTCTGAAGTCTGCGCCGGGGGTGGAGGGTGGGAATCCTGTTAGA-AGCTCTCCCTGGTGTGAATTTATGAAGCCCCGTGCACACTGTGACTTTTATAATCATAACTTAGCTGGTTTTA-GCTCACGTCGCAGGTGTCATGACA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190434716 226 - 190850796 GCTGGGTGACTGGGTGCTTGT-AA-CCCACAGAGGCCTTCCCT------GCTC-----AGTTGTGGGGTAAGCCTCTGAGTGG----AGACCCAGCAAGGAG-CTTCGAAGTCTACCTTGTGGGTGGAAGG-AGGAATCCCTGTAGTGAGCTCTCCGTGGTGTGGACTTGTGATGCCCCATGCGGACTGTGAATTTCATAATCATTATCTAGCTGGTTTCA-GCACACATTGTAGATTTTGTTTTG
i calJac3.chr3             I 919 C 0
s mm10.chr8                 87573311 213 - 129401213 GGAGGGTGGCCAGGCATCTGC-AG-CATGCA---GCCTGTCCT------CTTTAGCAGGGCATCTGGATGACCTGCTGAGTGG----AGC-------------CTTTGAAGTCCTCTGCAGGGGTGGCCCG-----ATCCCTTTAGAGGACTCACCATCATCTGAATTTATGGAGGCTCATGCAGACTAGGACTCTCATAATCCTCTCTTAGTTGGTTTTAGGCAAACATCACAGATTCTGTTACA
i mm10.chr8                C 0 C 0
s canFam3.chr16             17866233 232 -  59632846 GGTGGGTGGCCAGGTGTTT-G-AACCATGCA---GCCTGTCTTCTTGTGGCTA----GGACCTCTGGATTGGCTGCCAAGTGG----AGACCAAGCAAGAGGCCTTTCAAGTCTATGTTGAGCG-GAGTAGTGCAAATCCCTTTAGACAACTCTCTATGGTGTGAATTTATGCAGTCCCATGAAGACTATGACTTTTATAATAGTCATTTATTTAGTTTTTTGCTCACATCACAAATTTCATTACA
i canFam3.chr16            C 0 C 0

a score=1139158.000000
s hg38.chr4_KI270925v1_alt    190939 436 +    555799  
s panTro4.chr4             192891286 436 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4_random        3802360 437 -  23176937  
i ponAbe2.chr4_random      C 0 C 0
s rheMac3.chr5             183577759 501 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188960764 501 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178384532 501 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135323995 501 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190434942 441 - 190850796  
i calJac3.chr3             C 0 I 804
s mm10.chr8                 87573524 443 - 129401213  
i mm10.chr8                C 0 C 0
s canFam3.chr16             17866465 426 -  59632846  
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113758255 6599 + 115148730 T

a score=214897.000000
s hg38.chr4_KI270925v1_alt    191375 87 +    555799 AAAA---------AGGAAAGTTCC-TTTTTTTCTGATAAAC-TAGGCTCTCTCCATAGGAAGTA-CTCTGAAGGCCCCCAGCTCCG-ACTCCGAGAGCAG
s panTro4.chr4             192891722 87 + 193495092 AAAA---------AAGAAAGTTCC-TTTTTTTCTGATAAAC-TAGGCTCTCTCCATAGGAAGTA-CCCTGAAGGCCCCCAGCTCCG-ACTCCGAGAGCAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4_random        3802797 89 -  23176937 AAAA---------AAGAAAATTCCTTTTTTTTCTGATAAACGTAGGCTCTCTCCATAGGAAGTA-CCTTGAAGGCCCCCAGCTCCG-ACTCTGAGAGCAG
i ponAbe2.chr4_random      C 0 C 0
s rheMac3.chr5             183578260 88 + 184069350 AAAA---------AAGAAAGTTCC-TTCTTTTCTGACAAACCTAGGCTCTCTCCATAGGAAGTG-CCCTAAAGGCCCCCAGCTCTG-ACTCCCAGCGCAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188961265 88 + 189454096 AAAA---------AAGAAAGTTCC-TTCTTTTCTGACAAACCTAGGCTCTCTCCATAGGAAGCG-CCCTAAAGGCCCCCAGCTCTG-ACTCCCAGCGCAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178385033 89 + 178775436 AAAA---------AAGAaagttcctttcttttctgaTAAACCTAGGCTCTCTCCATAGGAAGTG-CCCTAAAGGCCCCCAGCTCTG-ACTCCCAGCGCAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135324496 89 + 135778131 AAAA---------AAGAAAGTTCCTTTCTTTTCTGATAAACCTAGGCTCTCTCCATAGGAAGTG-CCCTAAAGGCCCCCAGCTCTG-ACTCCCAGCGCAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190436187 88 - 190850796 aaaa---------aaaaAAGCTCA-TGTTTTTCTGATAAGCTTAGGGTCACTCCATAGGAAGTA-TCCTGTAGGCCCCCAGCTCTG-ACTCCCAGAGCAG
i calJac3.chr3             I 804 C 0
s mm10.chr8                 87573967 82 - 129401213 --------------GGAAAATTCC---CCTTTTTGATATACTGCAGCTCCCCCTGTAGCAAACATCCTTGGTGGCCATTTTCCCTT-AGCCTTAGGACAG
i mm10.chr8                C 0 I 2
s canFam3.chr16             17866891 96 -  59632846 AAGACCACCCAGTGGAAAAGTCCC-TTTTCTTCTGATAAACCTAGACTCTCTCAATAG-AAATC-TTCTGATTGTC-CTAGCTCTGAACCCCCAGAATAG
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113758255 6599 + 115148730 T

a score=369.000000
s hg38.chr4_KI270925v1_alt    191462 4 +    555799 AGCC
s panTro4.chr4             192891809 4 + 193495092 AGCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4_random        3802886 4 -  23176937 AGCC
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113751656 4 + 115148730 AGCC
i nomLeu3.chr7b            T 6599 C 0
s rheMac3.chr5             183578348 3 + 184069350 -ACC
i rheMac3.chr5             C 0 I 1
s macFas5.chr5             188961353 3 + 189454096 -ACC
i macFas5.chr5             C 0 I 1
s papAnu2.chr5             178385122 2 + 178775436 -AC-
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135324585 3 + 135778131 -ACC
i chlSab2.chr7             C 0 I 1
s calJac3.chr3             190436275 4 - 190850796 AGCC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87574051 2 - 129401213 TG--
i mm10.chr8                I 2 C 0
s canFam3.chr16             17866987 4 -  59632846 TGCC
i canFam3.chr16            C 0 C 0

a score=1317678.000000
s hg38.chr4_KI270925v1_alt    191466 559 +    555799  
s panTro4.chr4             192891813 560 + 193495092  
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113751660 559 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183578352 535 + 184069350  
i rheMac3.chr5             I 1 I 221
s macFas5.chr5             188961357 534 + 189454096  
i macFas5.chr5             I 1 C 0
s papAnu2.chr5             178385124 521 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135324589 525 + 135778131  
i chlSab2.chr7             I 1 C 0
s calJac3.chr3             190436279 555 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87574053 539 - 129401213  
i mm10.chr8                C 0 C 0
s canFam3.chr16             17866991 616 -  59632846  
i canFam3.chr16            C 0 C 0
e ponAbe2.chr4_random        3802890   0 -  23176937 C

a score=17930.000000
s hg38.chr4_KI270925v1_alt    192025 12 +    555799 GCTCCAGCCGCA
s panTro4.chr4             192892373 12 + 193495092 GCTCCAGCCGCA
i panTro4.chr4             C 0 I 23
s nomLeu3.chr7b            113752219 12 + 115148730 GCTCCAGCCGCA
i nomLeu3.chr7b            C 0 I 23
s macFas5.chr5             188961891  8 + 189454096 GCTCCAGC----
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178385645 12 + 178775436 GTTCCGGCCGGA
i papAnu2.chr5             C 0 I 503
s chlSab2.chr7             135325114 12 + 135778131 GCTCCAGCCGCA
i chlSab2.chr7             C 0 I 6975
s calJac3.chr3             190436834 12 - 190850796 GCCTCAGCCGCA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17867607 12 -  59632846 CCTCCAGCAACA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87574592  0 - 129401213 C
e rheMac3.chr5             183578887 221 + 184069350 I
e ponAbe2.chr4_random        3802890  0 -  23176937 C

a score=1622.000000
s hg38.chr4_KI270925v1_alt    192037 24 +    555799 CGCAGCGCACCTGTCCACGAGTCT
s panTro4.chr4             192892408 24 + 193495092 CGCAGCGCACCTGTCCCCAAGTCT
i panTro4.chr4             I 23 C 0
s nomLeu3.chr7b            113752254 24 + 115148730 CGCAGCGCACCTGTCCCCGACTCC
i nomLeu3.chr7b            I 23 C 0
s macFas5.chr5             188961899 24 + 189454096 CGCAGCTCACATGTCCCCACGCCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178386160 24 + 178775436 CACAGCGCACCTGTCCACAAATCC
i papAnu2.chr5             I 503 C 0
s calJac3.chr3             190436846  2 - 190850796 ---GG-------------------
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87574592 10 - 129401213 ----CCGCCATTGT----------
i mm10.chr8                C 0 C 0
s canFam3.chr16             17867619 18 -  59632846 ----TTCCACCTTTCTAAGGGT--
i canFam3.chr16            C 0 C 0
e chlSab2.chr7             135325126 6975 + 135778131 I
e rheMac3.chr5             183578887 221 + 184069350 I
e ponAbe2.chr4_random        3802890  0 -  23176937 C

a score=14253.000000
s hg38.chr4_KI270925v1_alt    192061 8 +    555799 GGCCGCAG
s panTro4.chr4             192892432 8 + 193495092 GGCCGCAG
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113752278 8 + 115148730 GGCCGCAG
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188961923 8 + 189454096 GGCCGCAG
i macFas5.chr5             C 0 I 499
s papAnu2.chr5             178386184 8 + 178775436 GGCCGCAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135332101 8 + 135778131 GGCCGCAG
i chlSab2.chr7             I 6975 C 0
s mm10.chr8                 87574602 8 - 129401213 AACCACAG
i mm10.chr8                C 0 C 0
e canFam3.chr16             17867637 0 -  59632846 C
e calJac3.chr3             190436848 0 - 190850796 C
e rheMac3.chr5             183578887 221 + 184069350 I
e ponAbe2.chr4_random        3802890 0 -  23176937 C

a score=12259.000000
s hg38.chr4_KI270925v1_alt    192069 27 +    555799 CGCACCTGTCCCCGAGTCCGGCCGC--AG
s panTro4.chr4             192892440 27 + 193495092 CGCGCCTGTCCCCGAGTCCGGCCGC--AG
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113752286 27 + 115148730 CGCACCTGTCCCCGACTCCGGCCTC--AG
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188962430 25 + 189454096 CGCACCTGTCCCCACGCCCGGCCCC----
i macFas5.chr5             I 499 C 0
s papAnu2.chr5             178386192 27 + 178775436 CGCAtccgtccccacgcccggccgcag--
i papAnu2.chr5             C 0 I 48
s chlSab2.chr7             135332109 25 + 135778131 CGCACCTGTCCCCACGCCCGGCCGC----
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87574610 14 - 129401213 CACACCTTTCTGAA---------------
i mm10.chr8                C 0 C 0
s canFam3.chr16             17867637 11 -  59632846 --------TCTCAGACTCT----------
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190436848  0 - 190850796 C
e rheMac3.chr5             183578887 221 + 184069350 I
e ponAbe2.chr4_random        3802890  0 -  23176937 C

a score=522545.000000
s hg38.chr4_KI270925v1_alt    192096 224 +    555799 CGCACCTGTCCACAAGTGTCCA-CCTCTAAGGCAGTGTTCTTCAACACGC------ACCACGCGCATCCTCAGC-TGG-GCATTTCCAGAGGGAGCAAGTCTCTGAGAGGCAGGTCTAGCGCTAAGCTT-TCAACAAGTCGCAGGCT--------------ATACTTCCGAACACAAAGAAATGAGAATGACTTCACATCTCAGCAGAGCCAAAAGCAGTAGAC-AAATAAGCAACGATGAGA-TTTGGT
s panTro4.chr4             192892467 224 + 193495092 CGCACCTGTCCCCAAGTGTCCA-CCTCTAAGGCAGTGTTCTTCAACACGC------ACCACGCGCATCCTCAGC-TGG-GCATTTCCAGAGGGAGCAAGTCTCTGAGAGGCAGGTCTAGCGCTAAGCTT-TCAACAAGTCGCAGGCT--------------ATACTTCCGAACACAAAGAAATGAGAATGACTTCACATCTCAGCAGAGCCAAAAGCAGTAGAC-AAATAGGCAACCATGAGA-TTTGGT
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113752313 224 + 115148730 CGCACCTGTCCACAAGTGTCCA-ACTCTAAGGTAGTGTTCTTCAACACGC------ACCACGCGTATCCTCAGC-TGG-GCATTTCCAGAGGAAACAAGTCTCTGAGAGGCAGGTCTAGCGCTCAGCTT-TCAGCAAGCCGCAGGCG--------------ATACTTCCGAACACAAAGAAATGAGAATGACTTCACATCTCAGCAAAGCCAAAAGCAGTAGAC-AAATAAGCAACGATGGGA-tttgtt
i nomLeu3.chr7b            C 0 I 8465
s rheMac3.chr5             183579108 219 + 184069350 cgcacccgtccACAAGTGTCCA-ACTCCCAGGCACTGCGCTTCAACACGC------GCCACGCGCATCCTCAGC-TGG-GCATTTCCAGAGGGAGCAAGTCTCCGAGAGGCAGGTCTAGCGCTAAGTTT-TCAACGAGCCGCAGGCG--------------ATACTTCCGAACACAAAGAAATGAGAATGACTTCACCTCTCAGCAGAGCCAGAAGCAGTAGAC-AAATAAGCAACCATGGGA-T-----
i rheMac3.chr5             I 221 C 0
s macFas5.chr5             188962455 217 + 189454096 -GCA-CCGTCCACAAGTGTCCA-ACTCCCAGGCACTGCGCTTCAACACGC------GCCACGCGCATCCTCAGC-TGG-GCATTTCCAGAGGGAGCAAGTCTCCGAGAGGCGGGTCTAGCGCTAAGTTT-TCAACGAGCCGCAGGCG--------------ATACTTCCGAACACAAAGAAATGAGAATGACTTCACCTCTCAGCAGAGCCAGAAGCAGTAGAC-AAATAAGCAACCATGGGA-T-----
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178386267 220 + 178775436 cgcacCTGTCCACAAGTGTCCA-ACTCCCAGGCACTGCGCTTCAACACGC------GCCACGCGCATCCTCAGC-TGG-GCATTTCCAGAGGGAGCAAGTCTCCGAGAGGCAGGTCTAGCGCTAAGTTT-TCAACGAGCCGCAGGCG--------------ATACTTCCGAACACAAAGAAACGAGAATGACTTCACCTCTCAGCAGAGCCAGAAGCAGTAGAC-AAATAAGCAaccatgggatt-----
i papAnu2.chr5             I 48 C 0
s chlSab2.chr7             135332134 218 + 135778131 -GCACCTGTCCACAAGTGTCCA-ACTCCCAGGCACTGCGCTTCAACACGC------GCCACGCGCATCCTCAGC-TGG-GCATTTCCAGAGGGAGCAAGTCTCCGAGAGGCAGGTCTAGCGCTAAGTTT-TCAACAAGCCGCAGGCG--------------ACACTTCCGAACACAAAGAAATGAGAATGACTTCACATCTCAGCGGAGCCAGAAGCAGTAGAC-AAATAAGCAACCATGGGA-T-----
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190436848 205 - 190850796 ----------------TGACCAGACCCTAAGACAGGGTCCTTCAACATGC------ACCACAAGCATCCTCAGC-TGG-GCGTTTTCAGAGAGAACAAGTTTCTGAGAGGCAGGTCAAGGGATAAGCTT-TCAACAAGCCACAGGCA--------------ATTC-TCTGAACACAAAGAAGCAAGAATGACTTCACATCTCTGTAGAGCCAAAAGCGGCAGAC-AGATAAGTAAGGATGGAA-TTT---
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87574624 228 - 129401213 CGCACCAGTCTGAA-----CGA-ACTT---GACAGACTTCTTCAAGTTTCT-GGAAGCCATG-ACATCTTCATCGTGG-GCATTTCCAAAATGGACCCatctctgggagctgggtctagggatatacttgttaatataccccagatggtttctttctgcaCACACACACACACACAAAAATCTGAGAAAGACTTCACATCTCTCTGAAGCCAAAATCAATAGACAAAATAAATAAAAATG----------
i mm10.chr8                C 0 C 0
s canFam3.chr16             17867648 190 -  59632846 --------------------------------TGGAACTCTTCAAAATGTTCAGGAGCTATGGGCATTATCAAC-TAGCGCATTCCCAGAag----aaatctctgagaaccaggtttgagaatatgttt-ttaacaagccccagatg--------------attcttctgaacattaa-atttgacaataactTCACATTTCACTATAGTCAAAAGCTACAGAC-AAATATATAAGGATGGGA-T-----
i canFam3.chr16            C 0 C 0
e ponAbe2.chr4_random        3802890   0 -  23176937 C

a score=522488.000000
s hg38.chr4_KI270925v1_alt    192320 264 +    555799 TTTTTTTCTTCCCTCTTTCCGGACACTCACTCCTGCCTCC-------CATCGTACCGTCCTGGAAACAGG----A---AGAAGGTGTGT--ATCTTGGTACAAGCATCAACTATGCACAGGTC-----------CACTTTA-----ATGGGGTAAAGGACAGGGAGTGAGATAAATAAATATGATGCGATGT--CTC---------CAAAAGAGGAAC---ATTACACTGGGAACATCCATACACGGTTCAAAATTGCATCCATATTTAGTTATTACTTAGAAATCATCAAG--------GAAAGAAATGC----------TTTCTTT
s panTro4.chr4             192892691 264 + 193495092 TTTCTTTCTTCCCTCTTTCCGGACACTCACTCCTGCCTCC-------CATTGTACCGTCCTGGAAACAGG----A---AGAAGGTGTGT--ATCTTGGTACAAGCATCAACTATGCACAGGTC-----------CACTTTA-----ATGGGGGAAAGGACAGGGAGTGAGATAAACAAATATGATGCGATGT--CTC---------CAAAAGAGGAAC---ATTACACTGGGAACATCCATACACGGTTCAAAATTGCATCCATATTTAGTTATTACTTAGAAATCATCAAG--------GAAATAAATGC----------TTTCTTT
i panTro4.chr4             C 0 I 3126
s nomLeu3.chr7b            113761002 264 + 115148730 TTTTTTTCTTCCCTCTTTCCGGACACTCACTCCTGCCTCC-------CATCATACCATCCTGGAAACAGG----A---AGAAGGTATCT--ATCTTGGTACAAGCATCAACTATGCACAGGTC-----------CACTTTA-----ATGGGGGAAAGGACAGGGAGTGAGATAAATAAATATGATTTGATGT--CCC---------CAAAAGAGGAAC---ATTACACTGGGAACATCCATACATGGTTCAAAATTGCATCCATATTTAGTTATTACTTGGAAATTATTAAG--------GAAATAAATGC----------TTGCTTT
i nomLeu3.chr7b            I 8465 C 0
s rheMac3.chr5             183579327 258 + 184069350 TTTTTTTCTTCCCTCCTTGCGGACA--CGCTCCTGCCTCC-------CCTCGCACCGCCCTGGAAACAGG----T---AGAAGGTGCGC--ATCTTGGTACAACCATCAGCC-TGCCCAGGTC-----------CGCTTCA-----GTGGGGGACAGGACAGCGAGTGACATAAATAAACGTGATGCGATGT--CCC---------CGGAAGAGGAAC---ATTACACTGGGAACACCCGCAGATGGTTCAGAATTGCATCCATATGTAGTTATTACTTAGGAATCATTAAG--------GAAATAAATGC----------TTTC---
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188962672 258 + 189454096 TTTTTTTCTTCCCTCCTTGCGGACA--CGCTCCTGCCTCC-------CCTCGCACCGCCCTGGAAACAGG----C---AGAAGGTGCGC--ATCTTGGTGCAACCATCAGCC-TGCCCAGGTC-----------CGCTTCG-----GTGGGGGACAGGACAGGGAGTGACATAAATAAACGTGATGCGATGT--CCC---------CGGAAGAGGAAC---GTTACACTGGGAACATCCGCAGATGGTTCAGAATTGCATCCATATTTAGTTATTACTTAGGAATCATTAAG--------GAAATAAATGC----------TTTC---
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178386487 258 + 178775436 tttttttcttccctccttggGGACA--CACTCCTGCCTCG-------CATCGCACCGCCCTGGAAACAGG----A---AGAAGGTGCAC--ATCTTGGTACAACCATCAGCCGTGCCCAGGTC-----------CGCTTCA-----GT-GGGGACAGGACAGGGAGTGACATAAATAAACATGATGCGATGT--CCC---------CAGAAGAGGAAC---ATTACACTGGGAACATCCGCAGATGGTTCAGAATTGCATCCAGATTTAGTTATTACTTAGGaatcattaag--------gaaataaatgc----------tttc---
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135332352 259 + 135778131 TTTTTTTCTTCCCTCTTTCCGGACA--CAGTCCTGCCTCC-------CATCACACCGCCCTGGAAACAGG----A---AGAAGGTGCGC--ATCTGGGTACAACCACCAGCCGTGCCCAGGTC-----------CGCTTCA-----GTGGGGGACAGGACAGGGAGTGACATAAATGAACATGATGCGATGT--CCC---------CAGAAGAGGAAC---ATTACACTGGGAACATCCACAGATGGTTCAAAATTGCATCCATATTTAGTTATTACTTAGGAATCACTAAG--------GAAATAAACGC----------TTTC---
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190437053 207 - 190850796 --CTTCTCTTCCCTCCTTCTGGATGCTCACCCCTGCCTCC-------CATCATACCTCCTGGGAAACAGG----A---AGAAG-------------------------------GCACAGGTC-----------CATTTTA-----AC-GGGAAAAGGACAGGGGGTGAGAGAACTA----TGATACCATGT--CCC---------CAAAAGAGCA---------------------TCACGGATATTCCAAAATTGCATCCGTATTTAGCTGTGACTTAGAAATCATTAAG--------GAAACAGATGC----------TTCT---
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87574852 258 - 129401213 -----TTCTTCCCACGTTC--------CTTGCTTGCTTCCTCTGTAACAACATGCCATCTCAGGAACAGGAGCCA---GGGAGGTGCATGGATCTTAGAGGAAATGTGAAATACTTCCAGGTC-----------CTCTTTGTACTCAGAGAGGAAAGGATAA-AAGCAAAGGAAATAAA---GATATACTGC--CCCTCCCTCTTACACAGAGGGGTG---ACTGCATGTGCAATATTC--------------ATTTTCTGTACCTCTAGTGAGTCCTTAAAAATCATTGGGATTTTTTAAAAATAAC--------------------
i mm10.chr8                C 0 C 0
s canFam3.chr16             17867838 286 -  59632846 TTTTTTTCTTTCC-CCATCTGCACACTCACTCTTACATAA-------TAGCATCCCGTCTTGGAAAAAGA----AAATAAAAGGTATGTGTATTTCGATATAATCACGAAATATGTACAGGTCCTCTTTTCACTCACTTTA-----AT-GGAGAAAAGACAGAGAGTAAAAGAAATA----TGATTTGATGCTGCCC---------CAAAAGAGGGACACTATTACACTTGGAATATTCATATATATTCCAAAATTGAATGTATATTCATTCATTACTTAGAAATCTTTGGA--------AAAAAACACACACACATGAAATTCT---
i canFam3.chr16            C 0 C 0
e ponAbe2.chr4_random        3802890   0 -  23176937 C

a score=1051071.000000
s hg38.chr4_KI270925v1_alt    192584 401 +    555799 TTTTTTTCTAGGACTTCTTTTAAGAGAGGTTAGGGAAAGCTTTCAGTTATATTTTCTG--TCACCTTCCGCAATTTTAAATTGGATGAAATAGTGG------------------GAGACTTTGTTTTTATGGCTTTCTCCTTTCAACTATTGTAACAAACATAGCTACCTATGCTTAGCATGCTTTAAGGCTGTATGGGACCAT-CTCTATATTATGGCCCAAAC--AAAATTGGCTTCTGGAACAAGTGTGGCTGTTTTGAACTCGATCCACTTGAGTCGGAGATGAGGTTGACAGAGAGAGGACCAACTGTG-TATAAAGCTCCTTTAGGGAATATCCTGC---TAATGTGATCTACATTTCAAAGTGGAAACCAAATATTCACTGCCACTGGAGTCTTGATATTTCTGGGATTATCAAAAGTACT
s panTro4.chr4             192896081 401 + 193495092 TTTTTTTCTAGGACTTCTTTTAAGAGAGGTTAGGGAAAGCTTTCAGTTATATTTTCTG--TCACCTTCCGCAATTTTAAATTGGATGAAATAGTGG------------------GAGACTTTGTTTTTATGGCTTTCTCCTTTCAACTATTGTAACAAACATAGCTACCTATGCTTAGCATGCTTAAAGGCTGGATGGGACCAT-CTCTATATTATGGCCCAAAC--AAAATTGGCTTCTGGAACAAGTGTGGCTGTTTTGAACTCGATCCACTTGAGTCGGAGATGAGGTTGACAGAGAGAGGACCAACTGTG-TATAAAGCTCCTTTAGGGAATATCCTGC---TAATGTGATCTACATTTCAAAGTGGAAACCAAATATTCACTGCCACTGGAGTCTTGATATTTCTGGGATTATCAAAAGTACT
i panTro4.chr4             I 3126 C 0
s nomLeu3.chr7b            113761266 398 + 115148730 ---TTTTTTAGGACTTCTTTTAAGAGAGGTTATGGAAAGCTTTCAGTTATATTTTCTA--TCACCTTCCGCAATTTTAAATTGGATGAAATAGTGG------------------GAGATTTTGTTTTTATGGCTTTCTCCTTTCAACTATTATAACAAACATAGCTACCTATGCTTAGCATGCTTAAAGGCTGGATGAAACCAT-CTCTATATTATGGCCCAAAC--AAAATTGGCTTCTGGAACAAGTGTGGCTGTTTTGAACTCGATCCACTTGAGTCAGAGATGAGGTTGACAGAGAGAGGACCAACTGTG-TATAAAGCTCCTTTAGGGAATATCCTGC---TAATGTGATCTACATTTCAAAGTGGAAACCAAATATTCACTGCCACTGGAGTCTTGATATTTCTGGGATTATCAAAAGTACT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183579585 413 + 184069350 --TTTTTCTAGGACTTCTTTTAAGAGAGGTT-GGGAAACCTTTCCG--GTGTTTTCTG--TCA-CTTCCGCAATTTTAAATCGGATGAAATAGTGGGAGATTTCGCTTTTAGGAGAGATTTTGTTTTTACGGCTTTCTCCTTTCAGCTATGGTAACAAACAGAGCTGCCCACACTTCGCATGCTTAAAGGCCGGATGGGACCAT-CTCTATATTAGGGCCCAAAC--AAAATTGGCTTCTGGAACAAGTGTGGCTGTGTTGAACTCGGTCCACTTGAGTCGCAGATGCGGTTGACAGAGAGAGGACCAGCTGCA-TACAAAGCTCCTTTAGAGAATATCCTGC---TAATGTGACCTACGTTTCAAAGTGGAAATCAAATATTCGCTGCCACTGGAGTCTTAATATTTCTGGGATTATCAAAAGGACT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188962930 413 + 189454096 --TTTTTCTAGGACTTCTTTTAAGAGAGGTT-GGGAAACCTTTCCG--GTGTTTTCTG--TCA-CTTCCGCAATTTTAAATCGGATGAAATAGTGGGAGATTTCGCTTTTAGGAGAGATTTTGTTTTTACGGCTTTCTCCTTTCAGCTATGGTAACAAACATAGCTGCCCACACTTCACATGCTTAAAGGCCGGATGGGACCAT-CTCTATATTAGGGCCCAAAC--AAAATTGGCTTCTGGAACAAGTGTGGCTGTGTTGAACTCGGTCCACTTGAGTCGCAGATGCGGTTGACAGAGAGAGGACCAGCTGCA-TACAAAGCTCCTTTAGAGAATATCCTGC---TAATGTGACCTACGTTTCAAAGTGGAAATCAAATATTCGCTGCCACTGGAGTCTTAATATTTCTGGGATTATCAAAAGGACT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178386745 413 + 178775436 --tttttctagGACTTCTTTTAAGAGAGGTT-GGGTAAGCTTTCCG--GTGTTTTCTG--TCA-CTTCCGCAATTTTAAATCGGATGAAATAGTGGGAGATTTCGCTTTTAGGAGAGATTTTGTTTTTACGGCTTTCTCCTTTCAGCTATGGTAACAAACATAGCTACCCACACTTCGCATGCTTAAAGGCCGGATGGGACCAT-CTCTATATTACGGCCCAAAC--AAAACTGGCTTCTGGAACAAGTGTGGCTGTGTTGAACTCGGTCCACTTGAGTCGCAGATGCGGTTGACAGAGAGAGGACCAACTGCA-TACAAAGCTCCTTTAGAGAATATCCTGC---TAATGTGACCTACGTTTCAAAGTGGAAATCAAATATTCGCTGCCACTGGAGTCTTAATATTTCTGGGATTATCAAAAGGACT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135332611 413 + 135778131 --TGTTTCTAGGACTTCCTTTAAGAGAGGCT-GGGAAAGCTTTCGG--GTGTTTTCTG--TCACCTTCCGCAATTTTAAATCGGATGAAATAACGGGAGATTTCGCTTTTAGGAGAGATTTTGTTTTTACAGCTTTCTCCTTTCAACTATCGTAACAAACATAGCTACCCACACTTCGCATGCTT-TAGGCTGGATGGGACCAT-CTCTATATTGCGGCCCAAAC--AAAATTGGCTTCTGGAACAAGTGTGGCTGTGTTGAACTCGATCCACTTGAGTCGCAGATGCGGTTGACAGAGAGAGGACCAACTGCA-TACAAAGCTCCTTTACGGAATATCCTGC---TAATGTGACCTACGCTTCAAAGTGGAAATCAAATATTCGCTGCCACTGGAGTCTTAGTATTTCTGGGATTATCAAAAGGACG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190437260 408 - 190850796 TTTTTTTCTGGGACTTCTGGAAAGAGAGGTTGTGGAAAGCTTTCAGTTAT-CTTCCTG--TCA--TTCCACAATTTAAAATTGGATGAAATAGTGT-----TCTGCTTATGG--TAGATTTCGTGTTTACGGCTTTCCCCTTTCAACTCTTTTAACAGACATAGCTGCCTTCACTTAGGAGGCTTAAAGCCTGGAGGGAAGCAT-CTCTATATTATGGCCCAAACAAAAAACTGGCTTCGGGAACAAATGCGGATGTTCTAAACTCGATCCACTTGAGCTGGAGGTAA--CTGACACAGAGAGGATCAGCTGC--TACAAGGCTCCCTTAGAGAATACCCTGC---CCATGTGATCTACATTTCAAAGTGGAAACGAAATATTCTCTGCCACTGGAGTCTTACTATTTCTGGGATTATCAAAAGGCCT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87575110 379 - 129401213 TCTTTTCTAAAAACTTCTTTTGTAGAAGGCTAGGGGATGTGGCCAG--CTCTTTTCTGCTTCATTGTTCACAGTTCTAAGTCAGATGACATAGTGT-----CTTCCTAGTAA--AAGACTGTATTTTTAGGACTCTGTCCTTTCAACTGTTATAATAAATGGAGCCGTCTACAACCAACGTGTTTGGAAACTGGAACCAACTGT-GCCTATATTATG-----AGC--CAAATTGGCTCCTGGAGGAGACCCGACAGTTCTGAGCACTGTCCACTTGAGGCAAAGGTGA-CTTGACAAAGAG--------CTTCA-TGTAAG----CCCTGAAGTGTTTACTGCTTTTAAAATGGCCTGCTTTCCAGAAAAGAAACCCATTCCTCACTGCAGCTAAAATGCTACCATTTCT------------------
i mm10.chr8                C 0 C 0
s canFam3.chr16             17868124 408 -  59632846 TTCTTCTCTAAGACTCCTTTTAGGA-AGGTTAGAGGAAGCTTTCGGTTATTTTTGCTT--TCAGCTTCCACAATTCTAAATCAGATGAAATAGTGG-----CCTACTTGTGGGAGACTTTTTATTTTTATGATGTTCTCCTTTCAACTGTTGTAATAAATATAGCTGCCTACAATCAGCATGCTTCAAAACTGGATGGAACCATGGCCTACATTATGCTCCAAAC--AAAATTGCCTTCTGGGAGAAATGTATCTATTTTGAATGCAATCCACTTGAATCTTAG-----GGTAACACTGACAGG--CAGTTACACCCTAAACCTCCTTTAGAGTGTCCCCTGC---TAAAGTGGTCTATATTTCAAAGTAGAAACCAAATCTTCAACACATCTCAATTATTAATATTTTTTGGGTTATCAAAAAAACT
i canFam3.chr16            C 0 I 3490
e ponAbe2.chr4_random        3802890   0 -  23176937 C

a score=288332.000000
s hg38.chr4_KI270925v1_alt    192985 118 +    555799 TTCCTCTGACACAGGAGATATCATAACCTgacttggggttgaattcaaattctgccactaaatagctgtgcatgacacgtc---atctt-------------tttttcatcttt-aagatgaagTC------------------------------CTGAAATTT
s panTro4.chr4             192896482 118 + 193495092 TTCCTCTGACACAGGAGATATCATAACCTGACTTGGGGTTGAATTCAAATTCTGCCACAAAATAGCTGTGCATGACACGTC---ATCTT-------------TTTTTCATCTTT-AAGATGAAGTC------------------------------CTGAAATTT
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113761664 118 + 115148730 TTCCTCTGACACAGGAGATATCATAACTTgacttggggttgaattccaattctgccacaaaatagctgtgtatgacacttc---atctt-------------tttttcatcttt-aagatgaagTC------------------------------CTGAAATTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183579998 118 + 184069350 TTCCTCTGACACAGAAGATACCATAACTTgactgggggttgaattctgattctgccacaaaatagctgtgcatgacaccta---atctt-------------tttctcatcttt-aagatgaagTT------------------------------CTGAAATTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188963343 118 + 189454096 TTCCTCTGACACAGAAGATACCATAACTTGACTGGGGGTTGAATTCTGATTCTGCCACAAAATAGCTGTGCATGACACCTA---ATCTT-------------TTTCTCATCTTT-AAGATGAAGTC------------------------------CTGAAATTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178387158 118 + 178775436 TTCCTCTGACACAGAAGATACCATAACTTGACTGGGGGTTGAATTCTGATTCTGCCACAAAATAGCTGTGCATGACACCTA---atctt-------------tttctcatcttt-aagatGAAGTC------------------------------CTGAAATTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135333024 118 + 135778131 TTCCTCTGACACAGAAGGTGTCATAACTTCACTTGGGGTTGAATTCTGATTCTGCCACAAAACAGCTGTGCGTGACACCTA---ATCCT-------------TTTCTCATCTTT-AAGATGAAGTC------------------------------CTGAAATCT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190437668 117 - 190850796 TTCCTCGGACAAAGGAGATGCCACAACTTGACTTGGGGTTAAATTCTGATTCTTCTACAAAATAGCTGTGCACGACACCTA---GTCTT-------------TTT-TCATCTTT-AAGATGAAGTT------------------------------CTGAAATTT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87575489  95 - 129401213 ----------------------------------CAGGCTGACTACTAATTCTGCCACAAAATGGCTGTGT-TAATCCCTGCGTATCTT----GGCCTCAG-TTTCTCCTTTCTAAAGATGAAATC------------------------------GTGATACAC
i mm10.chr8                C 0 C 0
s canFam3.chr16             17872022 147 -  59632846 TTCATCTGCCATAGGACATCTga-----tgactttgggttgagtca----tctgt-----gatagctgtgtgagccaccta---atcctcctaggtgtcaactttctcatcttt-aagaCAAAGTCTTaaaaaaaaaaaaaaaaaaaaGACAAAGTCTTAAATTT
i canFam3.chr16            I 3490 C 0
e ponAbe2.chr4_random        3802890   0 -  23176937 C

a score=1708105.000000
s hg38.chr4_KI270925v1_alt    193103 530 +    555799  
s panTro4.chr4             192896600 530 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4_random        3802890 533 -  23176937  
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113761782 528 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183580116 514 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188963461 514 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178387276 514 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135333142 513 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190437785 529 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87575584 474 - 129401213  
i mm10.chr8                C 0 I 27
s canFam3.chr16             17872169 510 -  59632846  
i canFam3.chr16            C 0 C 0

a score=38908.000000
s hg38.chr4_KI270925v1_alt    193633 17 +    555799 GGTCCCCACCTACAGCT
s panTro4.chr4             192897130 17 + 193495092 GGTCCCCACCTACAGCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4_random        3803423 16 -  23176937 GGTCCCCACCTA-GGCT
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113762310 16 + 115148730 GGTCCCTACCTA-GGCT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183580630 17 + 184069350 GGTCCCCACCTACAGCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188963975 16 + 189454096 GGTCCCCACC-ACAGCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178387790 17 + 178775436 GGTCCCCACCTACAGCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135333655 17 + 135778131 GATCCCCACCTACAGCT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190438314 16 - 190850796 GGTCCC-ACCTACGGCT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17872679 14 -  59632846 ---TATCAGCTAGAACT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87576058 27 - 129401213 I

a score=469546.000000
s hg38.chr4_KI270925v1_alt    193650 257 +    555799 AAGAATAGAtttcagaggccgaggcaggtggatcacgaggtcatgagatcgagaccatcctggctaacaccgtgaaaccccgtctctactaaaaatataaaaaattagct-ggcttggtggtgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagcccagatctcgccactgcactcaagactgggagagagagcaagactccatctc-------------------------aaaaa
s panTro4.chr4             192897147 257 + 193495092 AAGAATAGAtttcagaggccgaggcaggtggatcacgaggtcatgagatcgagaccatcctggctaacaccgtgaaaccccgtctctactaaaaatacaaaaaattagcc-agcttggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccaggaggcggagcttgcagtgagcccagatctcgccactgcactcaagactgggagagagagcaagactccatctc-------------------------aaaaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4_random        3803439 275 -  23176937 AAGAATAGAtttcagaggctgaggcgggtggatcacgagctcaggagatcgagaccatcctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgtggtggcgggcacctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccggaaggcagagcttgcagtgagccgagatcacgccactgcactccagcctgggtgacagagcgagactccatctcaaaaaaaaaaaaaa--------aaaaaaaa
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113762326 258 + 115148730 AAGAATAGATGTCAgaggccgaggtggatggatcacgaggtcaggagatcgagaccattctggctaacactgtgaaaccccgtctctactacaaatataaaaaattagctgggcatggtggcgggcgcctgtagtcccagctgctcaggaggctgaggcaggagaatggcgtgaacccgggcggcggagcttggagtgagttgagatcgcgccactgcactccagcctgggagagagagcgaaactccatctc-------------------------gaaaa
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183580647 269 + 184069350 AAGAATAGATGTCAgaggcccaggc-ggtggatcacgaagtcaggagctggagaccatcctggctaacacgatgaaaccccatccctactaaaagtgcaaaaaattagccgagcgtgttggtgcgcacctgtagtcccagctactccggaggctgaggcaggagaatggcgtgaacccgggaggtggagcttgccgtgagcagagattgtgccagt-cactccagcctgggccacagagccagactccgtctcaaaacaaaac------------aaaacaaa
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188963991 280 + 189454096 AAGAATAGATGTCAgaggcccaggc-ggtggatcacgaagtcaggagctggagaccatcctggctaacacgatgaaaccccatccctactaaaagtgcaaaaaattagccgagcgtgttggtgcgcacctgtagtcccagctactccggaggctgaggcaggagaatggcgtgaacccgggaggtggagcttgccgtgagcagagattgtgccagt-cactccagcctgggccacagagccagactccgtctcaaaacaaaacaaaacaaaaaa-aaaacaaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178387807 277 + 178775436 AAAAATAGATGTCAGAGGCCCAGgc-ggtggatcacgaagtcaggagatggagaccatcctggctaacacgatgaaaccccatccctactaaaagtgcaaaaaattagccgagcgtggtggcgcgcacctgtagtcccagctactccggaggctgaggcaggagaatggcgtgaacccaggaggtggagcttgcagtgagcagagattgtgccagt-cactccaccctgggccacagagccagactccgtctcaaaacaaaacaaaacaaa----aaaacaaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135333672 281 + 135778131 AAGAACGGATGTCAgagggccaggc-ggcggatcacgtgatcgggagatggagaccatcctggctaacacagtgaaaccccatctctaccaaaagtgaaaaaaattagccgggtatggcggcaggcacctgtagtcccagctactctggaggctgaggcaggagaatggcatgaacccgggaggcagagcttgaagtgagcagagattgtgccact-cactccagcctggacaacggagccagactccatctcaaaaaaacaaaaaacaaaaaacaaaacaaa
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17872693  68 -  59632846 AAGAACAGG----------------------------------------------CATTCTGG----------------------------------------ATCAg------------------------------------------ggctggggcgggggtgggggg--------gggggcgggg--gGCAATACCCACAAA-----------------------------------------------------------------------------
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87576058  27 - 129401213 I
e calJac3.chr3             190438330   0 - 190850796 C

a score=85149.000000
s hg38.chr4_KI270925v1_alt    193907 28 +    555799 aagaaTAGATGTCAGGTGGGCACAGGAT
s panTro4.chr4             192897404 28 + 193495092 aagaaTAGATGTCAGGTGGGCACAGGAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4_random        3803714 28 -  23176937 aagaaTAGATGTCAGGTGGGCACGGGAT
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113762584 28 + 115148730 aagaaTAGATATAAGGTGGGCACAGGAT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183580916 28 + 184069350 aAGAATAGATGTCAGGTGGGCACAGGAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188964271 28 + 189454096 aAGAATAGATGTCAGGTGGGCACAGGAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178388084 28 + 178775436 aagaatagatGTCAGGTGGGCACAGGAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135333953 28 + 135778131 AAGAGTAGATGTCAGGTGGGCACAGGAT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190438330 28 - 190850796 AAGAATAGATGTCAGGCGGGCACAGGGT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17872761 18 -  59632846 GAAAACTGA---------GGCTCAGAG-
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87576058 27 - 129401213 I

a score=442041.000000
s hg38.chr4_KI270925v1_alt    193935 134 +    555799 CCAAACTA-TGGACTAAAGTTGCCATTAGAAGCTTGCTCTGAAATTGCTTTACAATCCTGTACTCTTTCTGTCCAC-CAATTTTGACACCAATGGAATATGAAACTTTACGTTTAAACTCAGTATCACCCTTTCAT
s panTro4.chr4             192897432 134 + 193495092 CCAAACTG-TGGACTAAAGTTGCCATTAGAAGCTTGCTCTGAAATTGCTTTACAATCCTGTACTCTTTCTATCCAC-CAATTTTGACACCAATGGAATATGAAACTTTACGTTTAAACTCAGTATCACCCTTTCAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4_random        3803742 134 -  23176937 CCAAACTG-TGGCCTGAAGTTGCCATTAGAAGCTTGCTCTGAAATTGCTTTACAATCCTGTACTCTTTCTATCCAC-CAATTTTGACACCAATGGAATATGAAACTTTATGTTTAAACTCAGTATCACCCTTTCAT
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113762612 134 + 115148730 CCAAACTG-TGGCCTAAAGTTGCCATTAGAAGCTTGCTCTGAAATTGCTTTACAATCCTGTACTCTTTCTATCCAC-CAATTTTGACACCAATAGAATATGAAACTTTACGTTTAAACTCAGTATCACCCTTTCAT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183580944 133 + 184069350 CCAAACTG-TGGGCTAAAGTTACCATTAGAAGCTTGCCTTGAAATTGCTTTACAAACCTACACTC-TTCTATCCAC-CAATTTTGACACCAGTGGAATATGAAACTTCACATGTAAACTCAGTATCATCCTTTCAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188964299 133 + 189454096 CCAAACTG-TGGGCTAAAGTTACCATTAGAAGCTTGCCTTGAAATTGCTTTACAAACCTACACTC-TTCTATCCAC-CAATTTTGACACCAGTGGAATATGAAACTTCACATGTAAACTCAGTATCATCCTTTCAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178388112 133 + 178775436 CCAAACTG-TGGGCTAAAGTTACCATTAGAAGCTTGCCTTGAAATTGCTTTACAAACCTACACTC-TTCTATCCAC-CAATTTTGACACCAGTGGAATATGAAACTTCACATGCAAACTCAGTATCATCCTTTCAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135333981 134 + 135778131 CCAAACTA-TGAGCTAAAGTTGCCATTAAAAGCTTGCCTTGAAATTGCTTTACAAACCTATACTCTTTCTATCCAC-CGATTTTGACACCAGTGGAATATGAAACTTCACATGTAAACTCAGTATCATCCTTTCAT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190438358 134 - 190850796 CCAAACCG-TGGCCTCAAGTTGCCATTGGAAGTTTGCGCTGATATTGCTTTACAATCCTATACTCTTTCTAGCCAC-CGATTTTGACACCAATGGAATATGAAGCGTTGTTGTTAAAGTCAGTATCATCCTTTCAG
i calJac3.chr3             C 0 I 589
s mm10.chr8                 87576085 133 - 129401213 CCAAACTG-TAGCCTAGAGCGGCCCCTAGAGGTAAAATTCGTAATCACATTACCAGCCTGCACCTTGTCTACCCAC-AAATTTCAA-ATCAGTAAAAGATCAAGATCTTCCTTGAAACTTATTAGGGTCACTTCAT
i mm10.chr8                I 27 C 0
s canFam3.chr16             17872779 116 -  59632846 --AAACTACTGGACGAAGGTT-----------------CTGAGATTCCCTTACAAACTTATACTC-TTCTATCCAAGCAGTTTTCACCACACTGGAATATAGAATTTTGCATTTAAATCTATTAACATACTTTGAA
i canFam3.chr16            C 0 C 0

a score=741823.000000
s hg38.chr4_KI270925v1_alt    194069 232 +    555799 GTGAATTCAGAAATTCCAAGATGGTGAT-CATTTCTATGTGACGTTAGCAACAATTAAACTAACGTCTCTTTGCCTGGACTTCTTTTCCAGAAA-GTGTCCTATGTGGTGGAGGGTGGAGGAGTGAAAG-GGGCCT-AGGAAGAGAGTGTCTAATTTAGTCTTGAGATATTACAGTGGCTTCAATACTGTTGTGTACAGGGATCTTTACTGTTTTACATATTATTT-CATGTGTACA
s panTro4.chr4             192897566 232 + 193495092 GTGAATTCAGAAATTCCAAGTTGGTGAT-CATTTTTATGTGACGTTAGCAACAATTAAACTAACATCTCTTTGCCTGGACTTCTTTTCCAGAAA-GTGTCCTATGTGGTGGAGGGTGGAGAAGTGAAAG-GGGGCT-AGGAAGAGAGTGTCTAATTTAGTCTTGAGATATTACAGTGGCTTCAATACTGTTGTGTACAGGGATCTTTACTGTTTTACATATTATTT-CATGTGTACA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4_random        3803876 232 -  23176937 GTGAATTCAGAAATTCCAAGTTGGTGAT-CATTTTTATGTGACGTTAACAACAATTAAACTAACGTCTCTTTGCCTGGACTTCTTTTCCAGAAA-GTGTCCTATGTGGTGGAGGGTGGAGGAGTGAAAG-GGGGCT-AGGAAGAGAGTGTCTAATTTAGTCTTGAGGTACTACGGTGGCTTCAATACTGTTGTGTACAGGGATCTTTACTGTTTTAAATATTATTT-TATGTTTACA
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113762746 231 + 115148730 GTGAATTCAGAAATTCCAAGTTGGTGAT-CATTTTTACGTGACGTTAGCAACAATGAAACTAACGTCTCTTTGCCTGGACTTCTTTTCCAGAAA-GTGTCCC-TGTGGTGGAGGGTGAAGGAGTGAAAG-GGGGCT-AGGAAGAGAGTGTCTAATTTAGTCTTGAGATGTTACAGTGACATCAATACTGTTGTGTACAGGGATCTTTACTGTTTTAAATATTATTT-CATGTGTACA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183581077 233 + 184069350 GTGAATTCAGAAATTCCAAGTTGGTGATGTATTTTTATGTGACGTTAGCAAGAATTAAACTAATGTCTCTTTGCCTGGACTTCTTTTCCAGAAA-GTGTCCTATGTGGTGAAGGGTGAAGGAGTGAAAG-GGGGCT-AGGAGAAGCGTATATAATTTAGTCTTGAGATATTACAGTGGTATCAGTACTGTTGTGCACACGGAGCTTTACTGTTTTAAATATTATTT-TATGTGAACA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188964432 233 + 189454096 GTGAATTCAGAAATTCCAAGTTGGTGATGTATTTTTATGTGACGTTAGCAAGAATTAAACTAATGTCTCTTTGCCTGGACTTCTTTTCCAGAAA-GTGTCCTATGTGGTGAAGGGTGAAGGAGTGAAAG-GGGGCT-AGGAGGAGCGTATATAATTTAGTCTTGAGATATTACAGTGGTATCAGTACTGTTGTGCACACGGAGCTTTACTGTTTTAAATATTATTT-TATGTGAACA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178388245 233 + 178775436 GTGAATTCAGAAATTCCAAGTTGGTGATGTATTTTTATGTGACGTTAGCAAGAATTAAACTAATGTCTCTTTGCCTTGACTTCTTTTCCAGAAA-GTGTCCTATGTGGTGAAGGGTGAAGGAGTGAAAG-GGGGCT-AGGAGGAGAGTATATAATTTAGTCTTGAGATATTACAGTGGTATCAGTACTGTTGTGCACACGGAGCtttactgttttaaatattattt-tatgtgaaCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135334115 224 + 135778131 GTGAATTCAGAAATTCCAAGTTGGTGATGTATTTTTATGTGACGTTAGCAAGAATTAAACTAACGTCTCTTTGCCTGGACTTCTTTTCCAGAAA-GTGTCCT---------AGGGTGAAGGAGTGAAAG-GGGGCT-AGGAGGAGAGTGTATAATTTAGTCTTGAGATATTACAGTGGTATCAATACTGCTGTGCACACAGAGCTTTACTGTTTTAAATATTATTT-TATGTAAATA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190439081 233 - 190850796 GTGAATTCAGAAACTCCAAGTTGGTGATCTGTTTTTATGTGAAGTTAGCATCAATTGAACTAACATCTCTTTGCCTGGACTTCTTTTCCAGAAA-GTGTCCTATGTGGTGGGGGGTGGAGGAGTGGAAG-GGGGCT-GGGAAGAGAATATATAATTTAGTCTTGAGATATTACAGTGGCATCAATACTGTTGTGAACAGGAAACTTCATTGTTTTAAATACTATTT-TATGGGTATG
i calJac3.chr3             I 589 C 0
s mm10.chr8                 87576218 215 - 129401213 GAATGTTCAGAAGTACCGACTTGATAATACATGCTTA-ATAAAATTAATAATATGGAAACTATGAACTCCTTTCTTGGGCTTCTTTTCCAGGGCTGTGTTCAGTG------GAGGTAACAGAGAAGAAG-AAAGCTGGGGAAGATATTATA--------TCTTTAGGTGTTAAA----TGTCATTTATGTTCTGT--CAGGAACTCTCTTGTCTAAACCACCGTTTCCATTTGTGCA
i mm10.chr8                C 0 I 1359
s canFam3.chr16             17872895 193 -  59632846 GTCAATTCAGAAATGTAAGATTATTGAC-------------------------ATTGAATCAATGTCTCGTTTCCTGGAATTCTTTTCCAGATA-GTAT----------------TGTAGAAGTTAGAGAGGAGAG-GGAAAAAGTATGTGTTATTCAGTCTTAAGATACTTCAATGATATTAGTGCCATCATGTACAGGAAACTTTACTGTATTAACTATGATTT-CATCTGTATT
i canFam3.chr16            C 0 C 0

a score=4095.000000
s hg38.chr4_KI270925v1_alt    194301 1 +    555799 T
s panTro4.chr4             192897798 1 + 193495092 T
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4_random        3804108 1 -  23176937 T
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113762977 1 + 115148730 T
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183581310 1 + 184069350 T
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188964665 1 + 189454096 T
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178388478 1 + 178775436 T
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135334339 1 + 135778131 T
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190439314 1 - 190850796 T
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17873088 1 -  59632846 T
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87576433 1359 - 129401213 I

a score=2846626.000000
s hg38.chr4_KI270925v1_alt    194302 802 +    555799  
s panTro4.chr4             192897799 802 + 193495092  
i panTro4.chr4             C 0 M 14167
s ponAbe2.chr4_random        3804109 803 -  23176937  
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113762978 802 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183581311 802 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188964666 803 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178388479 803 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135334340 810 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190439315 799 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87577792 936 - 129401213  
i mm10.chr8                I 1359 I 1
s canFam3.chr16             17873089 830 -  59632846  
i canFam3.chr16            C 0 I 10

a score=842976.000000
s hg38.chr4_KI270925v1_alt        195104 273 +    555799 GATTGGAAGCTCC----TAATTAACAGGAAGTATGGAGTGGAAT-AAAGTGAACTT-ATCATGGGGACCCTGGTGTTCCCTGTAGTGCTTTCTCCTCCTCTCTACTGGACACTCTTTTTCTTCTTTGTCTTTTTCCATTCAATAAAAGCAAGCCATTT---------ATATGATTC--AATAGAC----TGTGGATTGAGAATCAGAATTTTGGAG-------------TTGTTAGTAATTAACAAAGTAATTATCCAAGCATTTAATTTCACTGGACATGATAGCAGTTGA----------------------------------AATGACAATTTCTTG
s panTro4.chr4_GL389869_random     37438 273 -     69473 GATTGGAAGCTCC----TAATTAACAGGAAGTATGGAGTGGAAT-AAAGTGAACTT-ATCATGGGGACCCTGGTGTTCCCTGTAGTGCTTTCTCCTCCTCTCTACTGGACACTCTTTTTCTTCTTTGTCTTTTTCCATTCAATAAAAGCAAGCCATTT---------ATATGATTC--AATAGAC----TGTGGATTGAGAATCAGAATTTTGGAG-------------TTGTTAGTAATTAACAAAGTAATTGTCCAAGCATTTAATTTCACTGGACATGATAGCAGTTGA----------------------------------AATGATGATTTCTTG
i panTro4.chr4_GL389869_random n 0 C 0
s ponAbe2.chr4_random            3804912 274 -  23176937 GATTGTACACTCC----TAATTAACAGGAAGCATGGAGTGGAAT-AAAGTGTACTTAATAATGGGGACCCTGGTGTTCCCTGCAGTGCTTTCTCCTCCTCTCTACTGGACACTGTTTTTCTTCTTTGTCTTTTTCCATTCAATAAAAGCAAGCCATTT---------ATATGATTC--AATAGAC----TGTGGATTGAGAGTCAGAATTTTGGAG-------------TTGTTAGTAATTAACAAAGTAATCATCCAAGCATTTAATTTCACTGGAAATGATAGCAGTTGA----------------------------------AATGATGATTTCCTG
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113763780 273 + 115148730 GATTGGATGCTCC----TAATTAACAGGAAGTATGGAGTGGAAT-AAAGTGAACTT-ATCATGGGGACCCTGGTGTTCCCTGCAATGCTTTCTCCTCCTCTCTACTGGACACTGTTTTCCTTCTTTGTCTTTTTCCATTCGATAAAAGCAAGCCATTT---------ATATGATTC--AATAGAC----TGTGGATTGAGAATCAGAATTTTAGAG-------------TTGTTAGTAATTAACAAAGTAACCATCCAAGCATTTAATTTCACTGGAAATGATAGCAGTTGA----------------------------------AATGATGATTTCTTG
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183582113 282 + 184069350 GATTGGAAGCTCC----TAATTAACAGGAAGTATGGAGTGGAAT-AAAGTGAACTT-ATCGTGAGGATCCTGGTGTTTTCTGTGGTACTTTCTCCTCCTCTCTACTGGACACTCTTTTTCTTCTTTGTCTTTTTCCATTAAATAAAAGCAAGCCATTGATATGATTAATATGATTC--AATAGAC----TGTGGATTGAGAATCAGAATTTTGGAG-------------TTGTTAGTAATCAACAAAGTAATCATCCAAGCATTTAATTTCACTGTGAATGATAGCAGTTGA----------------------------------AATGATGATTTCTTG
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188965469 282 + 189454096 GATTGGAAGCTCC----TAATTAACAGGAAGTATGGAGTGGAAT-AAAGTGAACTT-ATCGTGAGGATCCTGGTGTTTTCTGTGGTACTTTCTCCTCCTCTCTACTGGACACTCTTTTTCTTCTTTGTCTTTTTCCATTAAATAAAAGCAAGCCATTGATATGATTAATATGATTC--AATAGAC----TGTGGATTGAGAATTAGAATTTTGGAG-------------TTGTTAGTAATCAACAAAGTAATCATCCAAGCATTTAATTTCACTGTGAATGATAGCAGTTGA----------------------------------AATGATGATTTCTTG
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178389282 282 + 178775436 GATTGGAAGCTCC----TAATTAACAGGAAGTATGGAGTGGAAT-AAAGCGAACTT-ATCGTGAGGATCCTGGTGTTTTCTGTGGtactttctcctcctctctaCTGGacactctttttcttctttgtctttttccattaaataaaagCAAGCCATTGATATGATTAATATGATTC--AATAGAC----TGTGGATTGAGAATCAGAATTTTGGAG-------------TTGTTAGTAATCAACAAGGTAATCATCCAAGCATTTAATTTCACTGTGAATGATAGCAGTTGA----------------------------------AATGATGATTTCTTG
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135335150 282 + 135778131 GATTGGAAGCCCC----TAATTAACAGGAAGTATGGAGTGGAAT-AAAGCGAACTT-ATCATGAGGACCCCGGTGTTCCCTGTAGTACTTTCTCCTCCTCTCTACTGGACACTCTTTTTCTTCTTTGTCTCTTTTCATTAAATAAAAGCAAGCCATTGATATGATTAATATGATTC--AATAGAC----TGTGGATTGAAAATCAGAATTTTGGAG-------------TTGTTAGTAATCAACAAAGTAATCATCCAAGCATTTACTTTCACTATGAATTATAGCAGTTGA----------------------------------AATGATGTTTTCTTG
i chlSab2.chr7                 C 0 C 0
s calJac3.chr3                 190440114 276 - 190850796 CGCTGGAAGCTAC----TAATTAACAGACGGCGTGGAGGGGAACGAAAGTGACCTT-ATCACGGGGACCCTGGTGTTCCCTGTCGTGCTTTCCTGTCCTGTCTAGTAGACACTCTTTTTCTTCTTTGTCTGTTTCCGTTGAATAAACGCAAGCTGTTT---------ATATAATTCAAAATAGAC----TGTGGATTGAGAATCGGAATTTGGGCA-------------TTGTTAGCAATTAACAAAGTAATCGTCCAAGCATTTCATTTCACTGTAAATGACAGCTGTTGA----------------------------------AATGATGATTTCTTG
i calJac3.chr3                 C 0 C 0
s mm10.chr8                     87578729 189 - 129401213 AAAACGAAGCTTC----TAATTAGGAGGAAGTTTGAAGAGACAC-ACACTGAACTG-ACTGTACTAACTCTCTGGGTTCCTTCA----TTTCTTCTTTCTTTGCCTGAAATGTCTTCCCCCTC-----------CCGTTGAATAAAAATAAGTTATGT--------------ATTC--AACTGAA----TG----------ATCAGAGTATGGGT----------------------------------------------------------------TGATAGCAGTTGT----------------------------------TATGGTAAT---ATA
i mm10.chr8                    I 1 C 0
s canFam3.chr16                 17873929 317 -  59632846 TATTAGTAGTCCCCTAATAATTCGGGGGGCACATGGAGTGGAAT-TAAGTGATTTT-ATTGCAATGAGTCT---ATTCCCTTCATTTCTTTCT-----TCTCTGCCTAATGTTCTTTTTCCTGTCT---TCCACCCACTTGATAAAAACAAGCCATTT---------ACAGGATTC--AACAGACAGTGTATGGGTGGATAATCAGAATTTGGGGGCTCTAAAACAGTTTTACCAATAATTAACAAAGTAATCATTCACTTATATAACTTCACTCTAAATGACAGTAGTTGATTTCTTAATAGTCCTTGATTTTACCCttttttttaaagattatttattt
i canFam3.chr16                I 10 I 173

a score=1709370.000000
s hg38.chr4_KI270925v1_alt        195377 484 +    555799  
s panTro4.chr4_GL389869_random     37711 491 -     69473  
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3805186 485 -  23176937  
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113764053 486 + 115148730  
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183582395 484 + 184069350  
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188965751 474 + 189454096  
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178389564 484 + 178775436  
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135335432 484 + 135778131  
i chlSab2.chr7                 C 0 C 0
s calJac3.chr3                 190440390 475 - 190850796  
i calJac3.chr3                 C 0 C 0
s mm10.chr8                     87578918 466 - 129401213  
i mm10.chr8                    C 0 I 176
s canFam3.chr16                 17874419 485 -  59632846  
i canFam3.chr16                I 173 C 0

a score=45959.000000
s hg38.chr4_KI270925v1_alt        195861 17 +    555799 GTCAGCACCCTACACCA
s panTro4.chr4_GL389869_random     38202 17 -     69473 GTCAGCaccctacacca
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3805671 17 -  23176937 GTCAGCTccctacacca
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113764539 17 + 115148730 GTCAGCTCCCTACATCA
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183582879 17 + 184069350 GTCAGCaccttacacca
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188966225 17 + 189454096 GTCAGCACCATACACCA
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178390048 17 + 178775436 GTCAGCACCTTACACCA
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135335916 17 + 135778131 GTCAGCACCTTACACCA
i chlSab2.chr7                 C 0 C 0
s calJac3.chr3                 190440865 17 - 190850796 GTCAGCACCCTACACCA
i calJac3.chr3                 C 0 C 0
s canFam3.chr16                 17874904  4 -  59632846 ----GTAC---------
i canFam3.chr16                C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I

a score=1636.000000
s hg38.chr4_KI270925v1_alt        195878 1 +    555799 A
s panTro4.chr4_GL389869_random     38219 1 -     69473 c
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3805688 1 -  23176937 a
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113764556 1 + 115148730 A
i nomLeu3.chr7b                C 0 T 12
s rheMac3.chr5                 183582896 1 + 184069350 a
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188966242 1 + 189454096 A
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178390065 1 + 178775436 A
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135335933 1 + 135778131 A
i chlSab2.chr7                 C 0 C 0
s canFam3.chr16                 17874908 1 -  59632846 A
i canFam3.chr16                C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e calJac3.chr3                 190440882 0 - 190850796 C

a score=8371.000000
s hg38.chr4_KI270925v1_alt        195879 4 +    555799 ACCT
s panTro4.chr4_GL389869_random     38220 4 -     69473 ccct
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3805689 4 -  23176937 ccct
i ponAbe2.chr4_random          C 0 C 0
s rheMac3.chr5                 183582897 4 + 184069350 ccct
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188966243 4 + 189454096 CCCT
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178390066 4 + 178775436 CCCT
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135335934 4 + 135778131 CCCT
i chlSab2.chr7                 C 0 C 0
s canFam3.chr16                 17874909 4 -  59632846 ACCT
i canFam3.chr16                C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e calJac3.chr3                 190440882 0 - 190850796 C
e nomLeu3.chr7b                113764557 12 + 115148730 T

a score=92222.000000
s hg38.chr4_KI270925v1_alt        195883 44 +    555799 TTCCTACACCAACCCTTTCCTACACCACCCCTTTCCTACACCAA
s panTro4.chr4_GL389869_random     38224 44 -     69473 ttcctacaccaaccctttcctacaccaaacctttcctacaccaa
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3805693 44 -  23176937 ttcctacaccacccctttcctacaccaaccctttactacaccac
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113764545 43 + 115148730 TCCCTACATCAACCCTTTCCTATACCACCCCTTTCCTATACC-C
i nomLeu3.chr7b                T 12 C 0
s rheMac3.chr5                 183582901 44 + 184069350 ttcctacaccaactctttcctacaccaaccctttcgtacaccaa
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188966247 44 + 189454096 TTCCTACACCAACTCTTTCCTACACCAACCCTTTCGTACACCAA
i macFas5.chr5                 C 0 I 4
s papAnu2.chr5                 178390070 44 + 178775436 TTCCTACACCAACTCTTTCCTACACCAaccctttcgtacaccaa
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135335938 44 + 135778131 TTCCCACACCAACCCTTTCCTACACCAACCCTTTCCTACACCAA
i chlSab2.chr7                 C 0 C 0
s canFam3.chr16                 17874913 40 -  59632846 TTCCT---CCTATTCTGTTC-ACAGTCTCTGTTTGGAACACGTG
i canFam3.chr16                C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e calJac3.chr3                 190440882  0 - 190850796 C

a score=2800.000000
s hg38.chr4_KI270925v1_alt        195927 1 +    555799 C
s panTro4.chr4_GL389869_random     38268 1 -     69473 c
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3805737 1 -  23176937 c
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113764588 1 + 115148730 C
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183582945 1 + 184069350 c
i rheMac3.chr5                 C 0 C 0
s papAnu2.chr5                 178390114 1 + 178775436 c
i papAnu2.chr5                 C 0 I 4
s chlSab2.chr7                 135335982 1 + 135778131 C
i chlSab2.chr7                 C 0 C 0
s canFam3.chr16                 17874953 1 -  59632846 C
i canFam3.chr16                C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e calJac3.chr3                 190440882 0 - 190850796 C
e macFas5.chr5                 188966291 4 + 189454096 I

a score=887.000000
s hg38.chr4_KI270925v1_alt        195928 3 +    555799 -CCC
s panTro4.chr4_GL389869_random     38269 3 -     69473 -cct
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3805738 3 -  23176937 -cct
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113764589 3 + 115148730 -CCT
i nomLeu3.chr7b                C 0 C 0
s chlSab2.chr7                 135335983 3 + 135778131 -CCC
i chlSab2.chr7                 C 0 I 1
s canFam3.chr16                 17874954 3 -  59632846 GCC-
i canFam3.chr16                C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390115 4 + 178775436 I
e macFas5.chr5                 188966291 4 + 189454096 I
e rheMac3.chr5                 183582946 0 + 184069350 C

a score=14116.000000
s hg38.chr4_KI270925v1_alt        195931 15 +    555799 --TTCGTACACCAAATC
s panTro4.chr4_GL389869_random     38272 15 -     69473 --ttcctacaccacccc
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3805741 15 -  23176937 --ttcctacaccacctc
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113764592 15 + 115148730 --TTCCTACACCACCCC
i nomLeu3.chr7b                C 0 C 0
s papAnu2.chr5                 178390119 15 + 178775436 --ttcctacaccacccc
i papAnu2.chr5                 I 4 C 0
s chlSab2.chr7                 135335987 15 + 135778131 --TTTCTACACCACCCC
i chlSab2.chr7                 I 1 C 0
s canFam3.chr16                 17874957 12 -  59632846 CTCTTATTCATC-----
i canFam3.chr16                C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e calJac3.chr3                 190440882  0 - 190850796 C
e macFas5.chr5                 188966291  4 + 189454096 I
e rheMac3.chr5                 183582946  0 + 184069350 C

a score=52355.000000
s hg38.chr4_KI270925v1_alt        195946 45 +    555799 TTTCCTACATCAACCCTTTCCTACACCACCCCTTTCCTA------CAACAC
s panTro4.chr4_GL389869_random     38287 45 -     69473 tttcctacaccaaccccttcgtacaccaaatctttccta------catcaa
i panTro4.chr4_GL389869_random C 0 I 219
s ponAbe2.chr4_random            3805756 45 -  23176937 tttcctacacaaaacctttcctacaccacctctttccta------caccaa
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113764607 29 + 115148730 TTTCCTACACCAACCCTTTCCTACACCAC----------------------
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966295 45 + 189454096 TTTCCTACACCACCCCTTTCTTACACCACCCCTTTCCTA------CATCAC
i macFas5.chr5                 I 4 C 0
s papAnu2.chr5                 178390134 44 + 178775436 tttcctacaccacccctttcctacacc-cccctttccta------catcac
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135336002 45 + 135778131 TTTCCTACATCACCCTTTTTCTACACCACCCCTTTCCTA------CACCAC
i chlSab2.chr7                 C 0 C 0
s canFam3.chr16                 17874969 50 -  59632846 -TTATCTCAATGCCCCGTTCTTCTTCCTCTCCTTCTTTAACAAACCAGTAC
i canFam3.chr16                C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e calJac3.chr3                 190440882  0 - 190850796 C
e rheMac3.chr5                 183582946  0 + 184069350 C

a score=33538.000000
s hg38.chr4_KI270925v1_alt        195991 45 +    555799 -------CTGTT--------------TCCTACACCAAACCTTTCCTACGACACCCCTTTCCTACAC
s ponAbe2.chr4_random            3805801 44 -  23176937 -------ccctt--------------tccaacaccacccctttcctacaccaaccc-ttcctacac
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113764636 45 + 115148730 -------CTCTT--------------TCCTACACCAAACCTTTCCTACACCACCTCTTTCCTACAG
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966340 44 + 189454096 -------CCCTT--------------TCCTACACCACCCC-ATCCTACACCACCCCTTTCCTACAC
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178390178 44 + 178775436 -------ccctt--------------ttctataccacccctttcctacaccacccc-atcctacac
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135336047 58 + 135778131 -------CCCATCCTACACCACCCCATCCTACACCACCCC-ATCCTACCCTACCCCTGTCCTACAC
i chlSab2.chr7                 C 0 C 0
s canFam3.chr16                 17875019 52 -  59632846 TTGTTATCTTTC--------------CCATGCTCCAATCCCTGCCTCCCATATGCCTATTATCCAC
i canFam3.chr16                C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e calJac3.chr3                 190440882  0 - 190850796 C
e rheMac3.chr5                 183582946  0 + 184069350 C
e panTro4.chr4_GL389869_random     38332 219 -     69473 I

a score=13160.000000
s hg38.chr4_KI270925v1_alt        196036 18 +    555799 CAAACTTTTCCTATACCA
s ponAbe2.chr4_random            3805845 17 -  23176937 catccCTTT-CTACACCA
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113764681 18 + 115148730 CAAATCTTTCCAACACCA
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966384 17 + 189454096 CA-CCCTTTCCTACACCA
i macFas5.chr5                 C 0 T 110
s papAnu2.chr5                 178390222 18 + 178775436 cacccctttcctacacca
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135336105 17 + 135778131 CA-CCCTTTCCTACACCA
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e rheMac3.chr5                 183582946  0 + 184069350 C
e panTro4.chr4_GL389869_random     38332 219 -     69473 I

a score=50019.000000
s hg38.chr4_KI270925v1_alt        196054 64 +    555799 CCCCTTCCCTACACCACCCCTTTCCTACACCAACCCTTGCCTACACCAACCCTTTCCTACACC-A
s ponAbe2.chr4_random            3805862 60 -  23176937 ACCCTTTCCTACAC--ACCCTTTCCTACAC--ACCCTTTCCTACACCATCCCTTTCCTACACC-A
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113764699 64 + 115148730 CCCCTTTCCTACACCACCCCTTTCCTACACTAACCTTTTACTACACCACCCCTTTACTACACC-A
i nomLeu3.chr7b                C 0 I 64
s macFas5.chr5                 188966291 48 + 189454096 CCCCTTTCCTACACCACCCCTTTCTTACACC-AC---------------CCCTTTCCTACATC-A
i macFas5.chr5                 T 110 C 0
s papAnu2.chr5                 178390240 61 + 178775436 -ccccatcctactccacccctttcctacacc-acccttccctacacc-acccttccctacacc-a
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135336122 62 + 135778131 -CCCTTTCCTACACCA-CCCTTTCCTACACC-ACCCTTTCCTACACCAACCCTTTCCTACACCAA
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e rheMac3.chr5                 183582946  0 + 184069350 C
e panTro4.chr4_GL389869_random     38332 219 -     69473 I

a score=5907.000000
s hg38.chr4_KI270925v1_alt        196118 6 +    555799 ACCCTT
s ponAbe2.chr4_random            3805922 6 -  23176937 ACTCTT
i ponAbe2.chr4_random          C 0 I 56418
s nomLeu3.chr7b                113764827 6 + 115148730 ACTCTT
i nomLeu3.chr7b                I 64 C 0
s macFas5.chr5                 188966339 6 + 189454096 CCCCTT
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178390301 6 + 178775436 accctt
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135336184 6 + 135778131 CCCCTT
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e rheMac3.chr5                 183582946 0 + 184069350 C
e panTro4.chr4_GL389869_random     38332 219 -     69473 I

a score=36862.000000
s hg38.chr4_KI270925v1_alt        196124 41 +    555799 GCCTCCACCACCCCTTTCCTGCAAC-A-CCCTTTCCTACAACA
s ponAbe2.chr4_random            3862346 42 -  23176937 tcctaccccacccctttcctacaccaa-ccctctcctacaaca
i ponAbe2.chr4_random          I 56418 C 0
s nomLeu3.chr7b                113764833 41 + 115148730 TCCTACACCAACCCTTTCCTACAAC-A-CCCTTTTCTACACCA
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966345 41 + 189454096 TCCTACACCACCCCA-TCCTACACC-ACCCCTTTCCTACACCA
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178390307 40 + 178775436 tcctacaccaccctt-tcctacacc-a-ccctttcctacacca
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135336190 41 + 135778131 TTCTACACCACCCCTGTCCTACACC-A-CTCTTTTCTACACCA
i chlSab2.chr7                 C 0 T 10928
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e rheMac3.chr5                 183582946  0 + 184069350 C
e panTro4.chr4_GL389869_random     38332 219 -     69473 I

a score=-310.000000
s hg38.chr4_KI270925v1_alt        196165 1 +    555799 T
s ponAbe2.chr4_random            3862388 1 -  23176937 a
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113764874 1 + 115148730 A
i nomLeu3.chr7b                C 0 C 0
s chlSab2.chr7                 135325303 1 + 135778131 T
i chlSab2.chr7                 T 10928 I 10927
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390347 0 + 178775436 C
e macFas5.chr5                 188966386 0 + 189454096 C
e rheMac3.chr5                 183582946 0 + 184069350 C
e panTro4.chr4_GL389869_random     38332 219 -     69473 I

a score=31195.000000
s hg38.chr4_KI270925v1_alt        196166 29 +    555799 CCCTTTCCTACACCACCCCTTTCCTACAC
s ponAbe2.chr4_random            3862389 28 -  23176937 ccctttcctacaaca-ccctttcctacac
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113764875 29 + 115148730 CCCTTTCCTATACCACCCCTTTCCTACAC
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966386 29 + 189454096 CCCTTTCCTACACCACCCCTTTCCTACAC
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178390347 29 + 178775436 tcctttcctacactacccctGTCGGACAC
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135336231 28 + 135778131 CCCTTTCCTACACCA-CCCTTTCCTACAC
i chlSab2.chr7                 I 10927 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e rheMac3.chr5                 183582946  0 + 184069350 C
e panTro4.chr4_GL389869_random     38332 219 -     69473 I

a score=56036.000000
s hg38.chr4_KI270925v1_alt        196195  80 +    555799 CAACCCTTCCCTA---------CACCA-CCCCTTTCCTACAC--------------CA-CCCTTTCCTACC----CCACCCCTTTCCTACAC-------------------CA-CCCT------------------TTCCTACACCA
s panTro4.chr4_GL389869_random     38551  81 -     69473 caccccttcccta---------cacca-tcccttccctacac--------------ca-ccctttcctaca----ccacctctttcctacac-------------------cacccct------------------ttcctacacca
i panTro4.chr4_GL389869_random I 219 I 1
s ponAbe2.chr4_random            3862417  82 -  23176937 cacccctttccta---------cacca-cccctttcctacac--------------cacccctttcctaca----ccacccctttcctacac-------------------taaccct------------------ttcctacacca
i ponAbe2.chr4_random          C 0 I 1
s nomLeu3.chr7b                113764904  51 + 115148730 -------------------------CA-ACCTTTTCCTACAC--------------CAACCCTTTCCTACC----CCACTTCTTTCCTACAC-------------------CAA---------------------------------
i nomLeu3.chr7b                C 0 T 398
s macFas5.chr5                 188966415  79 + 189454096 CACCCCTTTCCTA---------CACCA--CCCTTTCCTACAC--------------CA-CCCTTTCCTACA----CCAACCCTTTCCTACAC-------------------CA-CCCT------------------TTCCTATACCA
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178390376 143 + 178775436 CACCCCTCTCCTCCTGCCTGCTCATCA--TTCCCTCTTACACATGTTGGTCTCACTCA-CCCTGGGCTCCACTCCCTATCCCTCTCCCTCACATGGTCTTACAAACCAGGACA-CCTTCTGTTTCACATGCCCTAATCCTTACACCA
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135336259  82 + 135778131 CAACCCTTTCCTA---------CACCAACCCCTTTTCTACAT--------------CACCCCTTTCCTACA----CCACCCCTTTCCTACAT-------------------GA-CCCC------------------ATCCTACACCA
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071   0 -  59632846 C
e calJac3.chr3                 190440882   0 - 190850796 C
e rheMac3.chr5                 183582946   0 + 184069350 C

a score=16261.000000
s hg38.chr4_KI270925v1_alt        196275 30 +    555799 CCCTTTCCTACACCACCCCTTTCCTACACC
s panTro4.chr4_GL389869_random     38633 30 -     69473 ccctttcctacaccacccctttcctacacc
i panTro4.chr4_GL389869_random I 1 C 0
s ponAbe2.chr4_random            3862500 30 -  23176937 ccctttcctacaacatccctttcctacaac
i ponAbe2.chr4_random          I 1 C 0
s nomLeu3.chr7b                113764557 30 + 115148730 CCCTTTCCTATACCACCCCTTTCCTATACC
i nomLeu3.chr7b                T 398 C 0
s macFas5.chr5                 188966494 15 + 189454096 CCCCTTTCCTA--CACC-------------
i macFas5.chr5                 C 0 T 218
s papAnu2.chr5                 178390519 17 + 178775436 CCCCTACCCAAATCACC-------------
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135336341 29 + 135778131 CCCCATCCTACACCACCCC-ATCCTACCCT
i chlSab2.chr7                 C 0 I 1
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e rheMac3.chr5                 183582946  0 + 184069350 C

a score=5040.000000
s hg38.chr4_KI270925v1_alt        196305 5 +    555799 CC-CCT
s panTro4.chr4_GL389869_random     38663 5 -     69473 ac-cct
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3862530 6 -  23176937 actcct
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113764587 5 + 115148730 CC-CCT
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966291 5 + 189454096 CC-CCT
i macFas5.chr5                 T 218 C 0
s papAnu2.chr5                 178390536 5 + 178775436 TC-CCT
i papAnu2.chr5                 C 0 T 485
s chlSab2.chr7                 135336371 5 + 135778131 CC-CCT
i chlSab2.chr7                 I 1 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e rheMac3.chr5                 183582946 0 + 184069350 C

a score=68480.000000
s hg38.chr4_KI270925v1_alt        196310 59 +    555799 TTCCTACACCACCCCTTTCCTACACCAACCCTTTCCTACACCACCCCTTTCCTACACCA
s panTro4.chr4_GL389869_random     38668 58 -     69473 ttcctacaccacccctttcctatacc-accctttcctacaccacccctttcctgcacca
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3862536 59 -  23176937 ttcctacaccacccctttcctacaccaaccctttcctacaccacccctttcctacacca
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113764592 59 + 115148730 TTCCTACACCACCCCTTTCCTACACCAACCCTTTCCTACACCACCTCTTTCCTACACCA
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966296 59 + 189454096 TTCCTACACCACCCCTTTCTTACACCACCCCTTTCCTACATCACCCCTTTCCTACACCA
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135336376 56 + 135778131 GTCCTACACCA-CCCTTTCCTACACCA-CCCTTTCCTACACCA-CCTTTTCCTACACCA
i chlSab2.chr7                 C 0 T 11097
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C

a score=18082.000000
s hg38.chr4_KI270925v1_alt        196369 16 +    555799 CCCCTTTCCTACACCA
s panTro4.chr4_GL389869_random     38726 16 -     69473 accctttcctacacca
i panTro4.chr4_GL389869_random C 0 T 410
s ponAbe2.chr4_random            3862595 16 -  23176937 cccctttcctacacca
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113764651 16 + 115148730 AACCTTTCCTACACCA
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966355 15 + 189454096 -CCCCATCCTACACCA
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135325335 16 + 135778131 TCCCTTTCCTACACCA
i chlSab2.chr7                 T 11097 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C

a score=12410.000000
s hg38.chr4_KI270925v1_alt        196385 16 +    555799 CCCTTTCCCTACACCA
s ponAbe2.chr4_random            3862611 16 -  23176937 cccctttcctacacca
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113764667 16 + 115148730 CCTCTTTCCTACAGCA
i nomLeu3.chr7b                C 0 I 1
s macFas5.chr5                 188966370 16 + 189454096 CCCCTTTCCTACACCA
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135325351 16 + 135778131 TCCCTTTCCTACACCA
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e panTro4.chr4_GL389869_random     38742 410 -     69473 T

a score=58455.000000
s hg38.chr4_KI270925v1_alt        196401 48 +    555799 CCCTTTCCTACACCACCCCTTTCCTACACCACCCCTTTCCTACACCAA
s panTro4.chr4_GL389869_random     38332 48 -     69473 ccttttcctacaccacccCTTTCCTACAACACCTCTTTCCTACACCAA
i panTro4.chr4_GL389869_random T 410 C 0
s ponAbe2.chr4_random            3862627 48 -  23176937 ccctttcctacaccaaccctttcctacaccacccctttcctacaccaa
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113764684 48 + 115148730 ATCTTTCCAACACCACCCCTTTCCTACACCACCCCTTTCCTACACTAA
i nomLeu3.chr7b                I 1 C 0
s macFas5.chr5                 188966386 47 + 189454096 CCCTTTCCTACACCACCCCTTTCCTACACCACCCCTTTCCTACACCA-
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135325367 48 + 135778131 CCCTTTCCTACACCACCCCTTTCCTACACCACCCCTATCCTACACCAA
i chlSab2.chr7                 C 0 I 1
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C

a score=32713.000000
s hg38.chr4_KI270925v1_alt        196449 32 +    555799 CCCTTTCCTACACCAACCCTTTCCTACACCAA
s panTro4.chr4_GL389869_random     38380 32 -     69473 ACCTTTCCTAAACCAAGCCTTTCCTACACCAA
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3862675 32 -  23176937 ccctttcctacaccaaccctttcctataccac
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113764732 32 + 115148730 CCTTTTACTACACCACCCCTTTACTACACCAC
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966433 31 + 189454096 CCCTTTCCTACACCA-CCCTTTCCTACACCAA
i macFas5.chr5                 C 0 I 220
s chlSab2.chr7                 135325416 32 + 135778131 CCCTCTCCTACACCATCCCTTTCCTACACCAC
i chlSab2.chr7                 I 1 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C

a score=33323.000000
s hg38.chr4_KI270925v1_alt        196481 31 +    555799 CCCTTTCCTACACCAACCCTTCCCTACACCA
s panTro4.chr4_GL389869_random     38412 31 -     69473 GCCTTTCCTACACCAAACTTTTCCTATACCA
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3862707 30 -  23176937 ccctttcctacacc-accctttcctacacca
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113764764 31 + 115148730 CCCTTTCCTACACCAAACCTTTCCAACACCA
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966684 30 + 189454096 CCCTTTCCTACACC-ACCCTTTCCTATACCA
i macFas5.chr5                 I 220 C 0
s chlSab2.chr7                 135325448 31 + 135778131 CCCTTTCTTACACCAACCCTTTCCTACACCA
i chlSab2.chr7                 C 0 I 10503
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C

a score=1500.000000
s hg38.chr4_KI270925v1_alt        196512 1 +    555799 C
s panTro4.chr4_GL389869_random     38443 1 -     69473 C
i panTro4.chr4_GL389869_random C 0 I 16
s ponAbe2.chr4_random            3862737 1 -  23176937 c
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113764795 1 + 115148730 C
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966714 1 + 189454096 C
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135335982 1 + 135778131 C
i chlSab2.chr7                 I 10503 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C

a score=17824.000000
s hg38.chr4_KI270925v1_alt        196513 16 +    555799 CCCTTTCCTACACCAA
s panTro4.chr4_GL389869_random     38460 15 -     69473 ACCTTTCCTACACCA-
i panTro4.chr4_GL389869_random I 16 C 0
s ponAbe2.chr4_random            3862738 16 -  23176937 ccctttcctacaccac
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113764796 16 + 115148730 CCCTTTCCTACACCAC
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966715 16 + 189454096 CCCTTTCCTACACCAC
i macFas5.chr5                 C 0 T 267
s chlSab2.chr7                 135335983 16 + 135778131 CCCTTTTCTACACCAC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C

a score=-1554.000000
s hg38.chr4_KI270925v1_alt        196529  6 +    555799 CC-------ACAC
s ponAbe2.chr4_random            3862754 13 -  23176937 ccctttcctacac
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113764812 11 + 115148730 CCCCTTCCTAC--
i nomLeu3.chr7b                C 0 I 147
s chlSab2.chr7                 135335999  2 + 135778131 CC-----------
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966731 267 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e panTro4.chr4_GL389869_random     38475  0 -     69473 C

a score=100.000000
s hg38.chr4_KI270925v1_alt        196535 1 +    555799 C
s ponAbe2.chr4_random            3862767 1 -  23176937 c
i ponAbe2.chr4_random          C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135336001 0 + 135778131 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966731 267 + 189454096 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e nomLeu3.chr7b                113764823 147 + 115148730 I
e panTro4.chr4_GL389869_random     38475 0 -     69473 C

a score=6914.000000
s hg38.chr4_KI270925v1_alt        196536 16 +    555799 A-CCCTTTCCTACACC-A
s panTro4.chr4_GL389869_random     38475 17 -     69473 A-CCCTTGCCTACACCAA
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3862768 17 -  23176937 acccctttcctacacc-a
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113764970 16 + 115148730 A-CCCTTTCCTACAAT-A
i nomLeu3.chr7b                I 147 C 0
s chlSab2.chr7                 135336001 13 + 135778131 ----CTTTCCTACATC-A
i chlSab2.chr7                 C 0 I 1
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966731 267 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C

a score=69583.000000
s hg38.chr4_KI270925v1_alt        196552 66 +    555799 CCCTTTCCTACACCA-CCCTTTCCTACACCACCCCTTTCCTACACCACCCCTTTCCTACACCAACCC
s panTro4.chr4_GL389869_random     38492 65 -     69473 CACTTTCCTGCA-CA-CCCTTTCCTACAACATCCCTTTcctacaccacccctttcctacaccacccc
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3862785 65 -  23176937 ccctttcctacacca-ccctttcctacacca-ccctttcctacaccaccccttttctacaccatccc
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113764986 67 + 115148730 CCCTTTCCTACAACACCCCTTTCCTACACCACCCCTTTCCTACACCACCCCTTTCCTACATCAACCC
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966464 66 + 189454096 CCCTTTCCTACACCA-CCCTTTCCTATACCACCCCTTTCCTACACCACCCCTTTCCTACACCAACCC
i macFas5.chr5                 T 267 C 0
s chlSab2.chr7                 135336015 65 + 135778131 CCTTTTTCTACACCACCCCTTTCCTACACCACCCC-ATCCTACACCACCCC-ATCCTACACCACCCC
i chlSab2.chr7                 I 1 T 94
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C

a score=70404.000000
s hg38.chr4_KI270925v1_alt        196618 66 +    555799 TTCCCTACACCACCCCTTTCCTACACCA-CCC-TTTCCTACACCACCCCTTTCCTACACC-ACCCCTTT
s panTro4.chr4_GL389869_random     38557 66 -     69473 ttccctacaccatcccttccctacacca-ccc-tttcctacaccacctctttcctacacc-accccttt
i panTro4.chr4_GL389869_random C 0 T 355
s ponAbe2.chr4_random            3862850 67 -  23176937 tttcctacaccatccctttcctacaccacccc-tttcctacaccacccctttcctacacc-accccttt
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765053 67 + 115148730 TTTCCTACACCAACCCTTTCCTACACCACTTC-TTTCCTACACCAACCTTTTCCTACATC-ACCCCTTT
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966530 66 + 189454096 TTTCCTACACCAACCCTTTCCTACACCA-CCC-TTCCCTACACCACCCCTTTCCTACACCAACCCTTT-
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135335986 66 + 135778131 TTTTCTACACCACCCCTTTCCTACATCA-CCCTTTTTCTACACCACCCCTTTCCTACACC-ACCCCAT-
i chlSab2.chr7                 T 94 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C

a score=5206.000000
s hg38.chr4_KI270925v1_alt        196684 6 +    555799 CCTACA
s ponAbe2.chr4_random            3862917 6 -  23176937 tctaca
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765120 6 + 115148730 CCTACA
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966596 6 + 189454096 CCTACA
i macFas5.chr5                 C 0 I 266
s chlSab2.chr7                 135336052 6 + 135778131 CCTACA
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e panTro4.chr4_GL389869_random     38623 355 -     69473 T

a score=32531.000000
s hg38.chr4_KI270925v1_alt        196690 52 +    555799 CCACCCCTTCCTACACCACCCCTTCCCTACACCACCCCTTTCCTACACCAAC-
s ponAbe2.chr4_random            3862923 51 -  23176937 ccaccctttcctacaccacccctttcctacacca-ccctttcctacaccatc-
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765126 50 + 115148730 CCACCCTTTCCTACACCACCCCTTCCCTACACCA-CCCTTTCCTACACCA-C-
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966868 52 + 189454096 CCACCCTTTCCTATACCACCCCTTTCCTACACCACCCCTTTCCTACACCA-AC
i macFas5.chr5                 I 266 T 318
s chlSab2.chr7                 135336058 50 + 135778131 CCACCCCATCCTACACCACCCC-ATCCTACCCTACCCCTGTCCTACACCA-C-
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e panTro4.chr4_GL389869_random     38623 355 -     69473 T

a score=2295.000000
s hg38.chr4_KI270925v1_alt        196742 5 +    555799 CCTTC
s ponAbe2.chr4_random            3862974 5 -  23176937 ccttt
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765176 5 + 115148730 CCTTT
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966602 5 + 189454096 CCAAC
i macFas5.chr5                 T 318 I 318
s chlSab2.chr7                 135336108 5 + 135778131 CCTTT
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e panTro4.chr4_GL389869_random     38623 355 -     69473 T

a score=52179.000000
s hg38.chr4_KI270925v1_alt        196747 71 +    555799 CCTACACC-ACCCTTTCCTACACCA-CCCTTTCCTACACCACCC-TTTCCTACACCACCCCTTTCCTACACCAA
s ponAbe2.chr4_random            3862979 74 -  23176937 cctacaccaaccctttcctacaccacccctttcctacaccacccttttcctacaccaaccctttcctacaccaa
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765181 73 + 115148730 CCGACACTACCGCTTTCCTACACGA-ACCTTTCCTACACCAACCCTTTCCTACACCACCCCTTTCCTACAGCAA
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966925 72 + 189454096 CCTACACCAACCCTTTCCTACACCA-CCCTTTCCTACACCACCC-TTTCCTATACCACCCCTTTCCTACACCAC
i macFas5.chr5                 I 318 C 0
s chlSab2.chr7                 135336113 71 + 135778131 CCTACACC-ACCCTTTCCTACACCA-CCCTTTCCTACACCACCC-TTTCCTACACCAACCCTTTCCTACACCAA
i chlSab2.chr7                 C 0 I 95
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e panTro4.chr4_GL389869_random     38623 355 -     69473 T

a score=38444.000000
s hg38.chr4_KI270925v1_alt        196818 63 +    555799 CCCTTCCCTACACCAACCCTTTCCTACACCAACCCTTCCCTA--CACCAACCCTTTCCTACACC-A
s ponAbe2.chr4_random            3863053 63 -  23176937 cccttttctacacc-atcctttccTACGACACCCCTTTCCTA--CACCACCCCTTTCCTACACCAA
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765254 65 + 115148730 CCCTTTCCTACACCAAACCTTTCCTACACCAACCCTTTGCTATTCACCAACCCTTTCCTAAACC-A
i nomLeu3.chr7b                C 0 I 1
s macFas5.chr5                 188966997 62 + 189454096 CCCTTTCCTACACCA-CCCTTTCCTACACCACCCCTTTCCTA--CACCACCCCTTTCCTACACC-A
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135336279 62 + 135778131 CCCTTTTCTACATCACCCCTTTCCTACACCACCCCTTTCCTA--CATGACCCC-ATCCTACACC-A
i chlSab2.chr7                 I 95 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e panTro4.chr4_GL389869_random     38623 355 -     69473 T

a score=76031.000000
s hg38.chr4_KI270925v1_alt        196881 94 +    555799 CCCTTTCCTACACCACCCCTTTCCTACACCACCCCTTTCCTACACCACCCCTTTCATA--CACCACCCCTTTCCTACACCACCCCTTTCCTACACC
s panTro4.chr4_GL389869_random     38268 94 -     69473 ccctttcctacaccacccctttcctacaccaaccccttcgtacaccaaatctttccta--catcaaccttttcctacaccacccCTTTCCTACAAC
i panTro4.chr4_GL389869_random T 355 C 0
s ponAbe2.chr4_random            3863116 94 -  23176937 CCCTTTCTTACACCAACCATTTCCTATACCA-CCCTTTCCTACACCAATCCCTTCCTATTCATCAaccctttcctacagca-cccttccctatacc
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765320 76 + 115148730 CCCTTTCCTACACCACCCCTTTCCTATTCAA--------------CACCCCTTTCCTA--CACCACCCCTTTCCTACACCAACCCTTTCCTA----
i nomLeu3.chr7b                I 1 C 0
s macFas5.chr5                 188967059 93 + 189454096 CCCTTTCCTACACCACCCCTTTCCTACACCAACCCTTTCCTACACCAACCCTTTCCTA--CACCA-CCCTTTCCTACACCACCCCTTTCCTACACC
i macFas5.chr5                 C 0 T 219
s chlSab2.chr7                 135336341 90 + 135778131 CCCCATCCTACACCACCCC-ATCCTACCCTACCCCTGTCCTACACC-ACCCTTTCCTA--CACCA-CCCTTTCCTACACCA-CCTTTTCCTACACC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C

a score=910.000000
s hg38.chr4_KI270925v1_alt        196975 1 +    555799 A
s panTro4.chr4_GL389869_random     38362 1 -     69473 A
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3863210 1 -  23176937 a
i ponAbe2.chr4_random          C 0 C 0
s macFas5.chr5                 188966933 1 + 189454096 A
i macFas5.chr5                 T 219 C 0
s chlSab2.chr7                 135336431 1 + 135778131 A
i chlSab2.chr7                 C 0 T 10969
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e nomLeu3.chr7b                113765396 0 + 115148730 C

a score=27412.000000
s hg38.chr4_KI270925v1_alt        196976 31 +    555799 ACCCTTTCCTACACCACCCCTTTCCTACACC
s panTro4.chr4_GL389869_random     38363 31 -     69473 CCTCTTTCCTACACCAAACCTTTCCTAAACC
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3863211 31 -  23176937 cccctttcctacaccactgttttcctacacc
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765396 23 + 115148730 --------CTACACCACCACTTTTCTACACT
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966934 30 + 189454096 ACCCTTTCCTACACCA-CCCTTTCCTACACC
i macFas5.chr5                 C 0 I 188
s chlSab2.chr7                 135325463 31 + 135778131 ACCCTTTCCTACACCATCCCTTTCCTACACC
i chlSab2.chr7                 T 10969 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C

a score=546.000000
s hg38.chr4_KI270925v1_alt        197007 1 +    555799 A
s panTro4.chr4_GL389869_random     38394 1 -     69473 A
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3863242 1 -  23176937 a
i ponAbe2.chr4_random          C 0 C 0
s chlSab2.chr7                 135325494 1 + 135778131 A
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966964 188 + 189454096 I
e rheMac3.chr5                 183582946 0 + 184069350 C
e nomLeu3.chr7b                113765419 0 + 115148730 C

a score=24427.000000
s hg38.chr4_KI270925v1_alt        197008 25 +    555799 ACCCTTTCCTACACCACCCCTTTCC
s panTro4.chr4_GL389869_random     38395 25 -     69473 AGCCTTTCCTACACCAAGCCTTTCC
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3863243 25 -  23176937 accctttcctacgacacccctttcc
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765419 25 + 115148730 ACCCTTTCCTGCACCACCCCTTTCC
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188967152 25 + 189454096 ACCCTTTCCTATACCACCCCTTTCC
i macFas5.chr5                 I 188 C 0
s chlSab2.chr7                 135325495 25 + 135778131 CTCCTGTCGGACACCACCCCTCTCC
i chlSab2.chr7                 C 0 T 185
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C

a score=8779.000000
s hg38.chr4_KI270925v1_alt        197033 14 +    555799 TACACCACCCCTTT
s panTro4.chr4_GL389869_random     38420 14 -     69473 TACACCAAACTTTT
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3863268 14 -  23176937 tacaccaccccttt
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765444 13 + 115148730 TACACCACCCTTT-
i nomLeu3.chr7b                C 0 I 243
s macFas5.chr5                 188967177 14 + 189454096 TACACCACCCCTTT
i macFas5.chr5                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325520 185 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C

a score=16021.000000
s hg38.chr4_KI270925v1_alt        197047 25 +    555799 CCTACACCA--ACCCTTCCCTACACCA
s panTro4.chr4_GL389869_random     38434 25 -     69473 CCTATACCA--CCCCTTCCCTACACCA
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3863282 25 -  23176937 cctacacca--accgtttcctatacca
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765700 27 + 115148730 CCTACTACAACACCCATTCCTACACCA
i nomLeu3.chr7b                I 243 C 0
s macFas5.chr5                 188967191 25 + 189454096 CCTACACCA--ACCCTTTCCTACACCA
i macFas5.chr5                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325520 185 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C

a score=41101.000000
s hg38.chr4_KI270925v1_alt        197072 44 +    555799 -CCCCTTTCCTACACC-AACCCTTTCCTA--CACC-ACCCTTTCCTACA
s panTro4.chr4_GL389869_random     38459 45 -     69473 -CACCTTTCCTACACC-AACCCTTGCCTA--CACCAACACTTTCCTGCA
i panTro4.chr4_GL389869_random C 0 I 159
s ponAbe2.chr4_random            3863307 44 -  23176937 -c-cctttcctacacc-acccctttccta--ccccaatcctttcctacA
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765727 46 + 115148730 -C-CCTTTCCTACACC-AAGCCTTTCCTATTCACCAAGCCTTTCCTACA
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188967216 45 + 189454096 AC-CCTTTCCTACACCAACCCCTTTCCTA--CACC-ACCCTTTCCTACA
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135325335 44 + 135778131 TC-CCTTTCCTACACC-ATCCCTTTCCTA--CACC-ACCCTTTCCTACA
i chlSab2.chr7                 T 185 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C

a score=2010.000000
s hg38.chr4_KI270925v1_alt        197116 3 +    555799 CCA
s ponAbe2.chr4_random            3863351 3 -  23176937 CCA
i ponAbe2.chr4_random          C 0 T 1278
s nomLeu3.chr7b                113765773 3 + 115148730 GCA
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188967261 3 + 189454096 CCA
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135325379 3 + 135778131 CCA
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e panTro4.chr4_GL389869_random     38504 159 -     69473 I

a score=-406.000000
s hg38.chr4_KI270925v1_alt        197119 7 +    555799 --CCCTTCC
s nomLeu3.chr7b                113765776 6 + 115148730 --CCCTT-C
i nomLeu3.chr7b                C 0 T 325
s macFas5.chr5                 188967264 7 + 189454096 CCCCTGT--
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135325382 7 + 135778131 CCCCTTT--
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38504 159 -     69473 I

a score=5901.000000
s hg38.chr4_KI270925v1_alt        197126 13 +    555799 CCTACACCACCCC
s nomLeu3.chr7b                113765457 13 + 115148730 CCTACACTACCCC
i nomLeu3.chr7b                T 325 C 0
s macFas5.chr5                 188967271 13 + 189454096 CGGACACCACCCC
i macFas5.chr5                 C 0 T 660
s chlSab2.chr7                 135325389 13 + 135778131 CCTACACCACCCC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38504 159 -     69473 I

a score=5155.000000
s hg38.chr4_KI270925v1_alt        197139 11 +    555799 TTCCCTACACC
s nomLeu3.chr7b                113765470 11 + 115148730 TTTCCTACACC
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966624 11 + 189454096 TTCCCTACACC
i macFas5.chr5                 T 660 C 0
s chlSab2.chr7                 135325402 11 + 135778131 TATCCTACACC
i chlSab2.chr7                 C 0 I 10771
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38504 159 -     69473 I

a score=12245.000000
s hg38.chr4_KI270925v1_alt        197150 49 +    555799 ACCCCTTTCCTACACCACCCCTTTCCTACACCAACCCTTCCCTACACCA
s nomLeu3.chr7b                113765481 49 + 115148730 AGCCCTTTCCTATACCACCCCTTTCCTACAGCAACCCTTTCCTACACCA
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966635 49 + 189454096 ACCCCTTTCCTACACCAACCCTTTCCTACACCAACCCTTTCCTACACCA
i macFas5.chr5                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325413 10771 + 135778131 I
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38504 159 -     69473 I

a score=-42.000000
s hg38.chr4_KI270925v1_alt        197199 1 +    555799 C
s nomLeu3.chr7b                113765530 1 + 115148730 A
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966684 1 + 189454096 C
i macFas5.chr5                 C 0 I 453
s chlSab2.chr7                 135336184 1 + 135778131 C
i chlSab2.chr7                 I 10771 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38504 159 -     69473 I

a score=7287.000000
s hg38.chr4_KI270925v1_alt        197200 30 +    555799 CCCTTTCCTACACCACCCCTTTCCTACACC
s nomLeu3.chr7b                113765531 30 + 115148730 ACCTTTCCTACACTACCCCTTTCCTACACC
i nomLeu3.chr7b                C 0 C 0
s chlSab2.chr7                 135336185 30 + 135778131 CCCTTTTCTACACCACCCCTGTCCTACACC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966685 453 + 189454096 I
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38504 159 -     69473 I

a score=8242.000000
s hg38.chr4_KI270925v1_alt        197230 16 +    555799 ACCCTTTCCTACACCA
s panTro4.chr4_GL389869_random     38663 16 -     69473 accctttcctacacca
i panTro4.chr4_GL389869_random I 159 I 1
s nomLeu3.chr7b                113765561 16 + 115148730 ACTCTTTCCTACACCA
i nomLeu3.chr7b                C 0 I 1
s chlSab2.chr7                 135336215 16 + 135778131 ACTCTTTTCTACACCA
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966685 453 + 189454096 I
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=47222.000000
s hg38.chr4_KI270925v1_alt        197246 67 +    555799 CCCTTTCCTACACCACCCTTTCCTACACCACCCCTTTCCTACACC-ACCCCTTTCCTACACCAACCCT
s panTro4.chr4_GL389869_random     38680 67 -     69473 ccctttcctataccaccctttcctacaccacccctttcctgcacc-aaccctttcctacaccaaccct
i panTro4.chr4_GL389869_random I 1 T 303
s nomLeu3.chr7b                113765578 54 + 115148730 CCCTTTGCTA-------------TTCACCAACCCTTTCCTACACC-ACCCCTTTCCTACACCAACCCT
i nomLeu3.chr7b                I 1 C 0
s macFas5.chr5                 188967138 67 + 189454096 CCCTTTCCTACACCACCCTTTCCTATACCACCCCTTTCCTACACC-ACCCCTTTCCTACACCAACCCT
i macFas5.chr5                 I 453 C 0
s chlSab2.chr7                 135336231 68 + 135778131 CCCTTTCCTACACCACCCTTTCCTACACCAACCCTTTCCTACACCAACCCCTTTTCTACATCACCCCT
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=546.000000
s hg38.chr4_KI270925v1_alt        197313 1 +    555799 T
s nomLeu3.chr7b                113765632 1 + 115148730 T
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188967205 1 + 189454096 T
i macFas5.chr5                 C 0 T 521
s chlSab2.chr7                 135336299 1 + 135778131 T
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38747 303 -     69473 T

a score=215.000000
s hg38.chr4_KI270925v1_alt        197314 4 +    555799 CC---CT
s nomLeu3.chr7b                113765633 7 + 115148730 TCCTACT
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966685 3 + 189454096 -C---CT
i macFas5.chr5                 T 521 I 522
s chlSab2.chr7                 135336300 4 + 135778131 TC---CT
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38747 303 -     69473 T

a score=30584.000000
s hg38.chr4_KI270925v1_alt        197318  98 +    555799 ACACCACCCCTTTCCTACACCAA--CCCTTTCCTACACCA-CCCTTTCCTACACCAACCCTTTCCTAC-ACCAC-CCCTTTCCTA---------CACCACCCTTTCCTACAC
s nomLeu3.chr7b                113765640 100 + 115148730 ACACCACCACTTTCCTACACT-A--CGCTTTCCTGCACCACCCCTTTCCTACACCAACCTTTTCCTACTACAACACCCATTCCTA---------CACCACCCTTTCCTACAC
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188967210 108 + 189454096 ACACCAACCCTTTCCTACACC-AACCCCTTTCCTACACCA-CCCTTTCCTACACCACCCCTGTCGGAC-ACCAC-CCCTCTCCTCCTGCCTGCTCATCATTCCCTCTTACAC
i macFas5.chr5                 I 522 T 246
s chlSab2.chr7                 135336304  96 + 135778131 ACACCACCCCTTTCCTACATG-A--CCCCATCCTACACCA-CCCCATCCTACACCACCCC-ATCCTAC-CCTAC-CCCTGTCCTA---------CACCACCCTTTCCTACAC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071   0 -  59632846 C
e calJac3.chr3                 190440882   0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946   0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38747 303 -     69473 T

a score=600.000000
s hg38.chr4_KI270925v1_alt        197416 1 +    555799 C
s nomLeu3.chr7b                113765740 1 + 115148730 C
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188967072 1 + 189454096 C
i macFas5.chr5                 T 246 C 0
s chlSab2.chr7                 135336400 1 + 135778131 C
i chlSab2.chr7                 C 0 T 155
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38747 303 -     69473 T

a score=1862.000000
s hg38.chr4_KI270925v1_alt        197417 15 +    555799 AACCCTTTCCTACAC
s nomLeu3.chr7b                113765741 12 + 115148730 AAGCCTTTCCTA---
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188967073 15 + 189454096 ACCCCTTTCCTACAC
i macFas5.chr5                 C 0 I 3
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135336401 155 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38747 303 -     69473 T

a score=49212.000000
s hg38.chr4_KI270925v1_alt        197432 127 +    555799 CCCTTTCCTACACCAACCCTTTCCTACACCA--CCCTTTCCTACACCACCCCTTTCCTACACCACCCCTTTCATACACCACCCCTTTCCTACACCACCCCTTTCCTACACCAACCCTTTCCTACACCAA
s nomLeu3.chr7b                113765753 119 + 115148730 --------TTCACCAAGCCTTTCCTACAGCA--CCCTTCCCTACACCACCCATTTCCTACACCAACACTTTGCTACAACACCCATTTCCTACACCACCCCTTTCCTACACCAACCCTTTTCTACACCAA
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188967091 126 + 189454096 CCCTTTCCTACACCAACCCTTTCCTACACCA--CCCTTTCCTACACCACCCCTTTCCTACACCA-CCCTTTCCTATACCACCCCTTTCCTACACCACCCCTTTCCTACACCAACCCTTTCCTACACCAA
i macFas5.chr5                 I 3 C 0
s chlSab2.chr7                 135336246 126 + 135778131 CCCTTTCCTACACCAACCCTTTCCTACACCAACCCCTTTTCTACATCACCCCTTTCCTACACCACCCCTTTCCTACATGACCCC-ATCCTACACCACCCC-ATCCTACACC-ACCCCATCCTACCCTAC
i chlSab2.chr7                 T 155 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071   0 -  59632846 C
e calJac3.chr3                 190440882   0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946   0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38747 303 -     69473 T

a score=6431.000000
s hg38.chr4_KI270925v1_alt        197559 9 +    555799 CCCTTTCCT
s panTro4.chr4_GL389869_random     38444 9 -     69473 CCCTTCCCT
i panTro4.chr4_GL389869_random T 303 C 0
s nomLeu3.chr7b                113765872 9 + 115148730 CCCTCTCTT
i nomLeu3.chr7b                C 0 T 177
s macFas5.chr5                 188967217 9 + 189454096 CCCTTTCCT
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135336372 9 + 135778131 CCCTGTCCT
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=3438.000000
s hg38.chr4_KI270925v1_alt        197568 6 +    555799 ACACCA
s panTro4.chr4_GL389869_random     38453 6 -     69473 ACACCA
i panTro4.chr4_GL389869_random C 0 C 0
s macFas5.chr5                 188967226 6 + 189454096 ACACCA
i macFas5.chr5                 C 0 T 330
s chlSab2.chr7                 135336381 6 + 135778131 ACACCA
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e nomLeu3.chr7b                113765881 177 + 115148730 T
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=7644.000000
s hg38.chr4_KI270925v1_alt        197574 15 +    555799 CCCCTTTCCTACACC
s panTro4.chr4_GL389869_random     38459 15 -     69473 CACCTTTCCTACACC
i panTro4.chr4_GL389869_random C 0 C 0
s macFas5.chr5                 188966902 15 + 189454096 CCCCTTTCCTACACC
i macFas5.chr5                 T 330 C 0
s chlSab2.chr7                 135336387 14 + 135778131 -CCCTTTCCTACACC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e nomLeu3.chr7b                113765881 177 + 115148730 T
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=273.000000
s hg38.chr4_KI270925v1_alt        197589 1 +    555799 A
s panTro4.chr4_GL389869_random     38474 1 -     69473 A
i panTro4.chr4_GL389869_random C 0 C 0
s macFas5.chr5                 188966917 1 + 189454096 A
i macFas5.chr5                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135336401 0 + 135778131 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e nomLeu3.chr7b                113765881 177 + 115148730 T
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=3969.000000
s hg38.chr4_KI270925v1_alt        197590 8 +    555799 ACCCTTTC
s panTro4.chr4_GL389869_random     38475 8 -     69473 ACCCTTGC
i panTro4.chr4_GL389869_random C 0 C 0
s macFas5.chr5                 188966918 8 + 189454096 ACCCTTTC
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135336401 8 + 135778131 ACCCTTTC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e nomLeu3.chr7b                113765881 177 + 115148730 T
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=4874.000000
s hg38.chr4_KI270925v1_alt        197598 6 +    555799 CTACAC
s panTro4.chr4_GL389869_random     38483 6 -     69473 CTACAC
i panTro4.chr4_GL389869_random C 0 I 127
s nomLeu3.chr7b                113765704 6 + 115148730 CTACAA
i nomLeu3.chr7b                T 177 C 0
s macFas5.chr5                 188966926 6 + 189454096 CTACAC
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135336409 6 + 135778131 CTACAC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=7443.000000
s hg38.chr4_KI270925v1_alt        197604 17 +    555799 C-ACCCTTTCCTACACCA
s nomLeu3.chr7b                113765710 17 + 115148730 C-ACCCATTCCTACACCA
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966932 18 + 189454096 CAACCCTTTCCTACACCA
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135336415 17 + 135778131 C-ACCTTTTCCTACACCA
i chlSab2.chr7                 C 0 T 11128
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38489 127 -     69473 I

a score=15752.000000
s hg38.chr4_KI270925v1_alt        197621 46 +    555799 CCCTTTCCTACACCACCCCTTTCCTACACCACCCCTTCCCTACACC
s nomLeu3.chr7b                113765727 32 + 115148730 CCCTTTCCTACACCAAGCCTTTCCTA--------------TTCACC
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966950 45 + 189454096 CCCTTTCCTACACCA-CCCTTTCCTATACCACCCCTTTCCTACACC
i macFas5.chr5                 C 0 I 237
s chlSab2.chr7                 135325304 46 + 135778131 CCCTTTCCTACACCATCCCTTTCCTACACCATCCCTTTCCTACACC
i chlSab2.chr7                 T 11128 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38489 127 -     69473 I

a score=22436.000000
s hg38.chr4_KI270925v1_alt        197667 48 +    555799 ACCCCTTTCCTACACCACCCTTTCCTACACCACCCCTTTCCTACACCA
s nomLeu3.chr7b                113765759 48 + 115148730 AAGCCTTTCCTACAGCACCCTTCCCTACACCACCCATTTCCTACACCA
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188967232 48 + 189454096 ACCCCTTTCCTACACCACCCTTTCCTACACCACCCCTGTCGGACACCA
i macFas5.chr5                 I 237 C 0
s chlSab2.chr7                 135325350 48 + 135778131 ATCCCTTTCCTACACCACCCTTTCCTACACCACCCCTTTCCTACACCA
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38489 127 -     69473 I

a score=5815.000000
s hg38.chr4_KI270925v1_alt        197715 10 +    555799 CCCCTTTCCT
s panTro4.chr4_GL389869_random     38616 10 -     69473 cccctttcct
i panTro4.chr4_GL389869_random I 127 C 0
s nomLeu3.chr7b                113765807 10 + 115148730 ACACTTTGCT
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188967280 10 + 189454096 CCCCTCTCCT
i macFas5.chr5                 C 0 T 237
s chlSab2.chr7                 135325398 10 + 135778131 CCCCTATCCT
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=20358.000000
s hg38.chr4_KI270925v1_alt        197725 29 +    555799 ACACCA-CCCCTTCCCTACACCCCCCCTTT
s panTro4.chr4_GL389869_random     38626 29 -     69473 acacca-cccctttcctacaccaccccttt
i panTro4.chr4_GL389869_random C 0 C 0
s nomLeu3.chr7b                113765817 29 + 115148730 ACAACA-CCCATTTCCTACACCACCCCTTT
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188967053 28 + 189454096 ACACCA--CCCTTTCCTACACCACCCCTTT
i macFas5.chr5                 T 237 C 0
s chlSab2.chr7                 135325408 30 + 135778131 ACACCAACCCCTCTCCTACACCATCCCTTT
i chlSab2.chr7                 C 0 T 26
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=21905.000000
s hg38.chr4_KI270925v1_alt        197754 58 +    555799 CCTACCTACACCAACCCTTTCCTACACCACCCCTTTCCTA---------CACCACCCTTTCCTACAC
s panTro4.chr4_GL389869_random     38655 53 -     69473 ----cctacacc-accctttcctacaccacccctttccta---------taccaccctttcctacac
i panTro4.chr4_GL389869_random C 0 C 0
s nomLeu3.chr7b                113765846 63 + 115148730 ----CCTACACCAACCCTTTTCTACACCAACCCTCTCTTCCTGCCTGCTCATCATTCTGTCTTACAC
i nomLeu3.chr7b                C 0 T 923
s macFas5.chr5                 188967081 54 + 189454096 ----CCTACACCAACCCTTTCCTACACCAACCCTTTCCTA---------CACCACCCTTTCCTACAC
i macFas5.chr5                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325438 26 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=1198.000000
s hg38.chr4_KI270925v1_alt        197812 17 +    555799 CA-CCCTTTCCTACACCA
s macFas5.chr5                 188967135 18 + 189454096 CACCCCTTTCCTACACCA
i macFas5.chr5                 C 0 T 79
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325438 26 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e nomLeu3.chr7b                113765909 923 + 115148730 T
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38708  0 -     69473 C

a score=-410.000000
s hg38.chr4_KI270925v1_alt        197829 9 +    555799 CCACACCAC
s macFas5.chr5                 188967074 2 + 189454096 CC-------
i macFas5.chr5                 T 79 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325438 26 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e nomLeu3.chr7b                113765909 923 + 115148730 T
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38708 0 -     69473 C

a score=13062.000000
s hg38.chr4_KI270925v1_alt        197838 57 +    555799 CCCTTTCCTACACCACCCCTTTCCTACACCAACCCTTTCCTACACCACCCCTTTCCT
s nomLeu3.chr7b                113764986 57 + 115148730 CCCTTTCCTACAACACCCCTTTCCTACACCACCCCTTTCCTACACCACCCCTTTCCT
i nomLeu3.chr7b                T 923 I 619
s macFas5.chr5                 188967076 55 + 189454096 -CCTTTCCTACACCAACCCTTTCCTACACCAACCCTTTCCTACACCACCCTTTCCT-
i macFas5.chr5                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325438 26 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38708  0 -     69473 C

a score=482.000000
s hg38.chr4_KI270925v1_alt        197895 5 +    555799 ACACC
s macFas5.chr5                 188967131 5 + 189454096 ACACC
i macFas5.chr5                 C 0 I 96
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325438 26 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e nomLeu3.chr7b                113765043 619 + 115148730 I
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38708 0 -     69473 C

a score=191.000000
s hg38.chr4_KI270925v1_alt        197900 2 +    555799 AC
s macFas5.chr5                 188967232 2 + 189454096 AC
i macFas5.chr5                 I 96 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325438 26 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e nomLeu3.chr7b                113765043 619 + 115148730 I
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38708 0 -     69473 C

a score=6661.000000
s hg38.chr4_KI270925v1_alt        197902 42 +    555799 CCCTTTCATACACCACCCCTTTCCTACCCCACCCCTTTCCTA
s nomLeu3.chr7b                113765662 42 + 115148730 CGCTTTCCTGCACCACCCCTTTCCTACACCAACCTTTTCCTA
i nomLeu3.chr7b                I 619 C 0
s macFas5.chr5                 188967234 39 + 189454096 CCCTTTCCTACACCA-CCCTTTCCTACACCACCCCTGTCG--
i macFas5.chr5                 C 0 T 561
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325438 26 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38708  0 -     69473 C

a score=300.000000
s hg38.chr4_KI270925v1_alt        197944 1 +    555799 C
s nomLeu3.chr7b                113765704 1 + 115148730 C
i nomLeu3.chr7b                C 0 T 662
s macFas5.chr5                 188966712 1 + 189454096 C
i macFas5.chr5                 T 561 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325438 26 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38708 0 -     69473 C

a score=573.000000
s hg38.chr4_KI270925v1_alt        197945 2 +    555799 AC
s nomLeu3.chr7b                113765043 2 + 115148730 AC
i nomLeu3.chr7b                T 662 C 0
s macFas5.chr5                 188966713 2 + 189454096 AC
i macFas5.chr5                 C 0 I 31
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325438 26 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38708 0 -     69473 C

a score=91.000000
s hg38.chr4_KI270925v1_alt        197947 1 +    555799 A
s nomLeu3.chr7b                113765045 1 + 115148730 A
i nomLeu3.chr7b                C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325438 26 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966715 31 + 189454096 I
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38708 0 -     69473 C

a score=3967.000000
s hg38.chr4_KI270925v1_alt        197948 20 +    555799 CCACCCCTTTCCTACACCAA
s nomLeu3.chr7b                113765046 20 + 115148730 TCAACCCTTTCCTACACCAA
i nomLeu3.chr7b                C 0 C 0
s chlSab2.chr7                 135325412 20 + 135778131 CAACCCCTCTCCTACACCAT
i chlSab2.chr7                 T 26 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966715 31 + 189454096 I
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38708  0 -     69473 C

a score=15814.000000
s hg38.chr4_KI270925v1_alt        197968 32 +    555799 CCCTTTCCTACACCAACCCTTTCCTACACCAA
s nomLeu3.chr7b                113765066 32 + 115148730 CCCTTTCCTACACCACTTCTTTCCTACACCAA
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966746 32 + 189454096 CCCTTTCCTACACCACCCCTTTCTTACACCAC
i macFas5.chr5                 I 31 C 0
s chlSab2.chr7                 135325432 32 + 135778131 CCCTTTCCTACACCACCCCTTTCTTACACCAA
i chlSab2.chr7                 C 0 T 160
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38708  0 -     69473 C

a score=13149.000000
s hg38.chr4_KI270925v1_alt        198000 72 +    555799 CCCTTTCCTACACCAACCCTTTCCTACACCACCCCTTTCATACACCACCCCTTTCCTACACCACCCTTTCCT
s nomLeu3.chr7b                113765098 71 + 115148730 CCTTTTCCTACATCACCCCTTTCCTACACCA-CCCTTTCCTACACCACCCCTTCCCTACACCACCCTTTCCT
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966778 61 + 189454096 CCCTTTCCTACATCACCCCTTTTCTATACCACCCCTTTCCTACACCA-CCCTTTCCTACACC----------
i macFas5.chr5                 C 0 I 182
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325464 160 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38708  0 -     69473 C

a score=7436.000000
s hg38.chr4_KI270925v1_alt        198072 61 +    555799 ACAACATCCCTTTCCTACACCACCCCTTTCCTACACCACCCCTTTCCT--ACCAACCCTTCCC
s nomLeu3.chr7b                113765169 61 + 115148730 ACACCA-CCCTTTCCGACACTACCGCTTTCCTACACGA-ACCTTTCCTACACCAACCCTTTCC
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188967021 46 + 189454096 ACACCACCCCTTTCCTACACCACCCCTTTCCTACACCA-CCCTTTCC----------------
i macFas5.chr5                 I 182 T 31
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325464 160 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38708  0 -     69473 C

a score=15096.000000
s hg38.chr4_KI270925v1_alt        198133 67 +    555799 TACACCACCCCTTTCCTACA-CCACCCTTTCCTACACCACCCCTTTCCTACACCAACCCTTCCCTACA
s nomLeu3.chr7b                113765230 66 + 115148730 TACACCACCCCTTTCCTACAGCAACCCTTTCCTACACCAAACCTTTCCTACACCAACCCTTTGCTA--
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188967036 67 + 189454096 TACACCACCCCTTTCCTACA-CCACCCTTTCCTACACCACCCCTTTCCTACACCAACCCTTTCCTACA
i macFas5.chr5                 T 31 T 235
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325464 160 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38708  0 -     69473 C

a score=6966.000000
s hg38.chr4_KI270925v1_alt        198200 40 +    555799 --CCCCTTTCCTACACCAACCCTTTCCTACACCACCCCTTTC
s nomLeu3.chr7b                113765296 31 + 115148730 -----------TTCACCAACCCTTTCCTAAACCACCCCTTTC
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966868 42 + 189454096 CCACCCTTTCCTATACCACCCCTTTCCTACACCACCCCTTTC
i macFas5.chr5                 T 235 I 193
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325464 160 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38708  0 -     69473 C

a score=602.000000
s hg38.chr4_KI270925v1_alt        198240 3 +    555799 CTA
s nomLeu3.chr7b                113765327 3 + 115148730 CTA
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188967103 3 + 189454096 CCA
i macFas5.chr5                 I 193 T 266
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325464 160 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38708 0 -     69473 C

a score=-172.000000
s hg38.chr4_KI270925v1_alt        198243 21 +    555799 CAACACCCTTTCCTACCCAAC
s nomLeu3.chr7b                113765330 18 + 115148730 CACCA---CCCCTTTCCTATT
i nomLeu3.chr7b                C 0 I 168
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325464 160 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967106 266 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38708  0 -     69473 C

a score=855.000000
s hg38.chr4_KI270925v1_alt        198264 9 +    555799 CCTTTCCTA
s nomLeu3.chr7b                113765516 9 + 115148730 CCTTTCCTA
i nomLeu3.chr7b                I 168 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325464 160 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967106 266 + 189454096 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38708 0 -     69473 C

a score=873.000000
s hg38.chr4_KI270925v1_alt        198273 3 +    555799 CAC
s panTro4.chr4_GL389869_random     38708 3 -     69473 cac
i panTro4.chr4_GL389869_random C 0 C 0
s nomLeu3.chr7b                113765525 3 + 115148730 CAC
i nomLeu3.chr7b                C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325464 160 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967106 266 + 189454096 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=14946.000000
s hg38.chr4_KI270925v1_alt        198276 31 +    555799 C---CCTTTCCTACACCAACCCTTTCCTACACCA
s panTro4.chr4_GL389869_random     38711 31 -     69473 c---cctttcctgcaccaaccctttcctacacca
i panTro4.chr4_GL389869_random C 0 T 378
s nomLeu3.chr7b                113765528 34 + 115148730 CAAACCTTTCCTACACTACCCCTTTCCTACACCA
i nomLeu3.chr7b                C 0 T 214
s macFas5.chr5                 188966840 31 + 189454096 C---CCTTTCCTACACCAACCCTTTCCTACACCA
i macFas5.chr5                 T 266 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325464 160 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=1626.000000
s hg38.chr4_KI270925v1_alt        198307 25 +    555799 CCCTTTCCTACCCCA-CCCTTTCCTA
s macFas5.chr5                 188966871 26 + 189454096 CCCTTTCCTATACCACCCCTTTCCTA
i macFas5.chr5                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325464 160 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e nomLeu3.chr7b                113765562 214 + 115148730 T
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=5629.000000
s hg38.chr4_KI270925v1_alt        198332 21 +    555799 CACCACCCCTTTCCTACACCA
s nomLeu3.chr7b                113765348 21 + 115148730 CAACACCCCTTTCCTACACCA
i nomLeu3.chr7b                T 214 C 0
s macFas5.chr5                 188966897 21 + 189454096 CACCACCCCTTTCCTACACCA
i macFas5.chr5                 C 0 T 79
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325464 160 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=8209.000000
s hg38.chr4_KI270925v1_alt        198353 42 +    555799 ACCCTTCCCTACACCAACCCTTTCCTA------CACCACCCTTTC---CTA
s nomLeu3.chr7b                113765369 51 + 115148730 CCCCTTTCCTACACCAACCCTTTCCTACTACACCACCACTTTTCTACACTA
i nomLeu3.chr7b                C 0 I 366
s macFas5.chr5                 188966839 42 + 189454096 ACCCTTTCCTACACCAACCCTTTCCTA------CACCACCCTTTC---CTA
i macFas5.chr5                 T 79 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325464 160 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=2847.000000
s hg38.chr4_KI270925v1_alt        198395 23 +    555799 CACCACCC-TTTCCTACACCTACA
s nomLeu3.chr7b                113765786 24 + 115148730 CACCACCCATTTCCTACACCAACA
i nomLeu3.chr7b                I 366 T 667
s macFas5.chr5                 188966881 18 + 189454096 TACCACCCCTTTCCTACA------
i macFas5.chr5                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325464 160 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=200.000000
s hg38.chr4_KI270925v1_alt        198418 2 +    555799 CC
s macFas5.chr5                 188966899 2 + 189454096 CC
i macFas5.chr5                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325464 160 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e nomLeu3.chr7b                113765810 667 + 115148730 T
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=1746.000000
s hg38.chr4_KI270925v1_alt        198420 6 +    555799 ACCCCT
s nomLeu3.chr7b                113765143 6 + 115148730 ACCCCT
i nomLeu3.chr7b                T 667 C 0
s macFas5.chr5                 188966901 6 + 189454096 ACCCCT
i macFas5.chr5                 C 0 I 199
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325464 160 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=-829.000000
s hg38.chr4_KI270925v1_alt        198426 1 +    555799 -T
s nomLeu3.chr7b                113765149 1 + 115148730 -T
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188967106 1 + 189454096 A-
i macFas5.chr5                 I 199 T 392
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325464 160 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=833.000000
s hg38.chr4_KI270925v1_alt        198427 10 +    555799 TCCTACACCA
s nomLeu3.chr7b                113765150 10 + 115148730 CCCTACACCA
i nomLeu3.chr7b                C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325464 160 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967107 392 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=8649.000000
s hg38.chr4_KI270925v1_alt        198437 39 +    555799 CCCTTTCCTACACCACCCCTTTCCTACACCACC-CTTTCC
s nomLeu3.chr7b                113765160 39 + 115148730 CCCTTTCCTACACCACCC-TTTCCGACACTACCGCTTTCC
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966715 39 + 189454096 CCCTTTCCTACACCACCCCTTTCCTACACCACC-CTTTCC
i macFas5.chr5                 T 392 I 361
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325464 160 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=1714.000000
s hg38.chr4_KI270925v1_alt        198476 9 +    555799 TACACCACC
s nomLeu3.chr7b                113765199 9 + 115148730 TACACGAAC
i nomLeu3.chr7b                C 0 I 602
s macFas5.chr5                 188967115 9 + 189454096 TACACCACC
i macFas5.chr5                 I 361 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325464 160 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=8256.000000
s hg38.chr4_KI270925v1_alt        198485 35 +    555799 CTTTCCTACACCACCCCTTCCCTACACCACCCCTT
s nomLeu3.chr7b                113765810 35 + 115148730 CTTTGCTACAACACCCATTTCCTACACCACCCCTT
i nomLeu3.chr7b                I 602 C 0
s macFas5.chr5                 188967124 35 + 189454096 CTTTCCTACACCACCCCTTTCCTACACCACCCTTT
i macFas5.chr5                 C 0 T 157
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325464 160 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=7615.000000
s hg38.chr4_KI270925v1_alt        198520 36 +    555799 CCCTACACCAACCCTTCCCTACACCACCCCTTTCCT
s nomLeu3.chr7b                113765845 36 + 115148730 TCCTACACCAACCCTTTTCTACACCAACCCTCTCTT
i nomLeu3.chr7b                C 0 T 602
s macFas5.chr5                 188967002 35 + 189454096 TCCTACACC-ACCCTTTCCTACACCACCCCTTTCCT
i macFas5.chr5                 T 157 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325464 160 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=2208.000000
s hg38.chr4_KI270925v1_alt        198556 18 +    555799 ACACCA-CCCTTTCCTATA
s nomLeu3.chr7b                113765279 19 + 115148730 ACACCAACCCTTTGCTATT
i nomLeu3.chr7b                T 602 C 0
s macFas5.chr5                 188967037 17 + 189454096 ACACCACCCCTTTCCTA--
i macFas5.chr5                 C 0 T 298
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325464 160 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=5239.000000
s hg38.chr4_KI270925v1_alt        198574 22 +    555799 CACCACCCCTTTCCTACACCAC
s nomLeu3.chr7b                113765298 22 + 115148730 CACCAACCCTTTCCTAAACCAC
i nomLeu3.chr7b                C 0 I 100
s macFas5.chr5                 188966756 22 + 189454096 CACCACCCCTTTCTTACACCAC
i macFas5.chr5                 T 298 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325464 160 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=5734.000000
s hg38.chr4_KI270925v1_alt        198596 24 +    555799 CCCTTTCCTACACCACCCCTTTCA
s nomLeu3.chr7b                113765420 24 + 115148730 CCCTTTCCTGCACCACCCCTTTCC
i nomLeu3.chr7b                I 100 C 0
s macFas5.chr5                 188966778 24 + 189454096 CCCTTTCCTACATCACCCCTTTTC
i macFas5.chr5                 C 0 T 48
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325464 160 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=12748.000000
s hg38.chr4_KI270925v1_alt        198620 56 +    555799 TACACCACCCCTTTCCTACACCACCCCTTTCCTACACCAACCCTTTCCTACACCAA
s nomLeu3.chr7b                113765444 55 + 115148730 TACACCACCC-TTTCCTACACTACCCCTTTCCTACACCAGCCCTTTCCTATACCAC
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966754 56 + 189454096 TACACCACCCCTTTCTTACACCACCCCTTTCCTACATCACCCCTTTTCTATACCAC
i macFas5.chr5                 T 48 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325464 160 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=43823.000000
s hg38.chr4_KI270925v1_alt        198676 94 +    555799 CCCTTTCCTACACCACCCCTTTCCTACACCAACCCTTTCCTACACCACCCCTTTCCTACACCACCCTTTCCTACACCACCCCTTTCCTA--CACCA
s nomLeu3.chr7b                113765499 96 + 115148730 CCCTTTCCTACAGCAACCCTTTCCTACACCAAACCTTTCCTACACTACCCCTTTCCTACACCACTCTTTCCTACACCAACCCTTTGCTATTCACCA
i nomLeu3.chr7b                C 0 T 113
s macFas5.chr5                 188966810 92 + 189454096 CCCTTTCCTACACCA-CCCTTTCCTACACCA-CCCTTTCCTACACCAACCCTTTCCTACACCACCCTTTCCTATACCACCCCTTTCCTA--CACCA
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135325304 94 + 135778131 CCCTTTCCTACACCATCCCTTTCCTACACCATCCCTTTCCTACACCATCCCTTTCCTACACCACCCTTTCCTACACCACCCCTTTCCTA--CACCA
i chlSab2.chr7                 T 160 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=7512.000000
s hg38.chr4_KI270925v1_alt        198770 16 +    555799 CCCCTTTCCTACACCA
s nomLeu3.chr7b                113765482 16 + 115148730 GCCCTTTCCTATACCA
i nomLeu3.chr7b                T 113 C 0
s macFas5.chr5                 188966902 16 + 189454096 CCCCTTTCCTACACCA
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135325398 16 + 135778131 CCCCTATCCTACACCA
i chlSab2.chr7                 C 0 T 95
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=14829.000000
s hg38.chr4_KI270925v1_alt        198786 31 +    555799 ACCCTTCCCTACACCACCCCTTTCCTACACC
s nomLeu3.chr7b                113765498 31 + 115148730 CCCCTTTCCTACAGCAACCCTTTCCTACACC
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966918 31 + 189454096 ACCCTTTCCTACACCAACCCTTTCCTACACC
i macFas5.chr5                 C 0 T 125
s chlSab2.chr7                 135325319 31 + 135778131 TCCCTTTCCTACACCATCCCTTTCCTACACC
i chlSab2.chr7                 T 95 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=273.000000
s hg38.chr4_KI270925v1_alt        198817 1 +    555799 A
s nomLeu3.chr7b                113765529 1 + 115148730 A
i nomLeu3.chr7b                C 0 I 65
s chlSab2.chr7                 135325350 1 + 135778131 A
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966949 125 + 189454096 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=3639.000000
s hg38.chr4_KI270925v1_alt        198818 15 +    555799 ACCCTTCCCTACACC
s macFas5.chr5                 188966824 15 + 189454096 ACCCTTTCCTACACC
i macFas5.chr5                 T 125 C 0
s chlSab2.chr7                 135325351 15 + 135778131 TCCCTTTCCTACACC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e nomLeu3.chr7b                113765530 65 + 115148730 I
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=9168.000000
s hg38.chr4_KI270925v1_alt        198833 16 +    555799 ACCCTTTCCTACACCA
s nomLeu3.chr7b                113765595 16 + 115148730 ACCCTTTCCTACACCA
i nomLeu3.chr7b                I 65 C 0
s macFas5.chr5                 188966839 16 + 189454096 ACCCTTTCCTACACCA
i macFas5.chr5                 C 0 I 313
s chlSab2.chr7                 135325366 16 + 135778131 ACCCTTTCCTACACCA
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=10456.000000
s hg38.chr4_KI270925v1_alt        198849 32 +    555799 CCCCTTTCCTACACCAACCCTTCCCTACACCA
s nomLeu3.chr7b                113765611 17 + 115148730 CCCCTTTCCTACACCA---------------A
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188967168 32 + 189454096 CCCCTTTCCTACACCACCCCTTTCCTACACCA
i macFas5.chr5                 I 313 T 345
s chlSab2.chr7                 135325382 32 + 135778131 CCCCTTTCCTACACCACCCCTATCCTACACCA
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=373.000000
s hg38.chr4_KI270925v1_alt        198881 6 +    555799 -CCCTTT
s nomLeu3.chr7b                113765628 6 + 115148730 -CCCTTT
i nomLeu3.chr7b                C 0 C 0
s chlSab2.chr7                 135325414 6 + 135778131 ACCCCT-
i chlSab2.chr7                 C 0 T 100
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967200 345 + 189454096 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=1055.000000
s hg38.chr4_KI270925v1_alt        198887 11 +    555799 CCTACTACACC
s nomLeu3.chr7b                113765634 11 + 115148730 CCTACTACACC
i nomLeu3.chr7b                C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325420 100 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967200 345 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=19147.000000
s hg38.chr4_KI270925v1_alt        198898 110 +    555799 ACC-CTTTCCTACACCACCCTTTCCTACACCACCCCTTTCCTACACCACCCCTTTCCTACACCAACCCTTCCCTACACCACCCCTTTCCTACACCACCCTTTCCTACCCCA
s nomLeu3.chr7b                113765645  82 + 115148730 ACCACTTTCCTACACTACGCTTTCCTGCACCACCCCTTTCCTACACCAACCTTTTCCTA-----------------------------CTACAACACCCATTCCTACACCA
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966855 110 + 189454096 ACC-CTTTCCTACACCACCCTTTCCTATACCACCCCTTTCCTACACCACCCCTTTCCTACACCAACCCTTTCCTACACCAACCCTTTCCTACACCACCCTTTCCTACACCA
i macFas5.chr5                 T 345 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071   0 -  59632846 C
e calJac3.chr3                 190440882   0 - 190850796 C
e chlSab2.chr7                 135325420 100 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946   0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=42241.000000
s hg38.chr4_KI270925v1_alt        199008 95 +    555799 CCCTTTCCTACACCACCCCTTTCCTA--CACCACCCCTTTCCTACACCACCCTTTCCCACACCACCCCTTTCCTACACCAACCCTTTCCTACACCAA
s nomLeu3.chr7b                113765727 97 + 115148730 CCCTTTCCTACACCAAGCCTTTCCTATTCACCAAGCCTTTCCTACAGCACCCTTCCCTACACCACCCATTTCCTACACCAACACTTTGCTACAACAC
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966965 94 + 189454096 CCCTTTCCTATACCACCCCTTTCCTA--CACCACCCCTTTCCTACACCACCCTTTCCTACACCACCCCTTTCCTACACCACCCCTTTCCTACACCA-
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135325320 95 + 135778131 CCCTTTCCTACACCATCCCTTTCCTA--CACCATCCCTTTCCTACACCACCCTTTCCTACACCACCCCTTTCCTACACCACCCCTATCCTACACCAA
i chlSab2.chr7                 T 100 T 111
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=4183.000000
s hg38.chr4_KI270925v1_alt        199103 16 +    555799 CCCTTTCCTACACCAC
s nomLeu3.chr7b                113765824 16 + 115148730 CCATTTCCTACACCAC
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188967059 16 + 189454096 CCCTTTCCTACACCAC
i macFas5.chr5                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325415 111 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=5184.000000
s hg38.chr4_KI270925v1_alt        199119 9 +    555799 CCCTTTCCT
s nomLeu3.chr7b                113765840 9 + 115148730 CCCTTTCCT
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188967075 9 + 189454096 CCCTTTCCT
i macFas5.chr5                 C 0 T 135
s chlSab2.chr7                 135325304 9 + 135778131 CCCTTTCCT
i chlSab2.chr7                 T 111 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=1146.000000
s hg38.chr4_KI270925v1_alt        199128 2 +    555799 AC
s nomLeu3.chr7b                113765849 2 + 115148730 AC
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966949 2 + 189454096 AC
i macFas5.chr5                 T 135 I 135
s chlSab2.chr7                 135325313 2 + 135778131 AC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=10329.000000
s hg38.chr4_KI270925v1_alt        199130 21 +    555799 ACCAACCCTTTCCTACACCAA
s nomLeu3.chr7b                113765851 21 + 115148730 ACCAACCCTTTTCTACACCAA
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188967086 21 + 189454096 ACCAACCCTTTCCTACACCAA
i macFas5.chr5                 I 135 I 2
s chlSab2.chr7                 135325315 21 + 135778131 ACCATCCCTTTCCTACACCAT
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=600.000000
s hg38.chr4_KI270925v1_alt        199151 2 +    555799 CC
s nomLeu3.chr7b                113765872 2 + 115148730 CC
i nomLeu3.chr7b                C 0 C 0
s chlSab2.chr7                 135325336 2 + 135778131 CC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967107 2 + 189454096 I
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=3225.000000
s hg38.chr4_KI270925v1_alt        199153 7 +    555799 CTTTCCT
s nomLeu3.chr7b                113765874 7 + 115148730 CTCTCTT
i nomLeu3.chr7b                C 0 T 294
s macFas5.chr5                 188967109 7 + 189454096 CTTTCCT
i macFas5.chr5                 I 2 C 0
s chlSab2.chr7                 135325338 7 + 135778131 CTTTCCT
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=546.000000
s hg38.chr4_KI270925v1_alt        199160 1 +    555799 A
s nomLeu3.chr7b                113765587 1 + 115148730 A
i nomLeu3.chr7b                T 294 T 158
s macFas5.chr5                 188967116 1 + 189454096 A
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135325345 1 + 135778131 A
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=2346.000000
s hg38.chr4_KI270925v1_alt        199161 4 +    555799 CACC
s nomLeu3.chr7b                113765430 4 + 115148730 CACC
i nomLeu3.chr7b                T 158 C 0
s macFas5.chr5                 188967117 4 + 189454096 CACC
i macFas5.chr5                 C 0 I 111
s chlSab2.chr7                 135325346 4 + 135778131 CACC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=17838.000000
s hg38.chr4_KI270925v1_alt        199165 33 +    555799 ACCCCTTTCCTACACCACCCTTTCCCACACCAC
s nomLeu3.chr7b                113765434 33 + 115148730 ACCCCTTTCCTACACCACCCTTTCCTACACTAC
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188967232 33 + 189454096 ACCCCTTTCCTACACCACCCTTTCCTACACCAC
i macFas5.chr5                 I 111 T 300
s chlSab2.chr7                 135325350 33 + 135778131 ATCCCTTTCCTACACCACCCTTTCCTACACCAC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=17735.000000
s hg38.chr4_KI270925v1_alt        199198 38 +    555799 CCCTTTCCTACACCAACCCTTTCCTACACCAACCCTTC
s nomLeu3.chr7b                113765467 38 + 115148730 CCCTTTCCTACACCAGCCCTTTCCTATACCACCCCTTT
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966965 38 + 189454096 CCCTTTCCTATACCACCCCTTTCCTACACCACCCCTTT
i macFas5.chr5                 T 300 C 0
s chlSab2.chr7                 135325383 38 + 135778131 CCCTTTCCTACACCACCCCTATCCTACACCAACCCCTC
i chlSab2.chr7                 C 0 T 63
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=3438.000000
s hg38.chr4_KI270925v1_alt        199236 6 +    555799 CCTACA
s nomLeu3.chr7b                113765505 6 + 115148730 CCTACA
i nomLeu3.chr7b                C 0 I 77
s macFas5.chr5                 188967003 6 + 189454096 CCTACA
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135325358 6 + 135778131 CCTACA
i chlSab2.chr7                 T 63 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=3192.000000
s hg38.chr4_KI270925v1_alt        199242 11 +    555799 CCACCCTTTCC
s macFas5.chr5                 188967009 11 + 189454096 CCACCCTTTCC
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135325364 11 + 135778131 CCACCCTTTCC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e nomLeu3.chr7b                113765511 77 + 115148730 I
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=19590.000000
s hg38.chr4_KI270925v1_alt        199253 38 +    555799 TACACCACCCCTTTCCTGCACCACCCCTTTCCTACACC
s nomLeu3.chr7b                113765588 38 + 115148730 TTCACCAACCCTTTCCTACACCACCCCTTTCCTACACC
i nomLeu3.chr7b                I 77 C 0
s macFas5.chr5                 188967020 38 + 189454096 TACACCACCCCTTTCCTACACCACCCCTTTCCTACACC
i macFas5.chr5                 C 0 I 47
s chlSab2.chr7                 135325375 38 + 135778131 TACACCACCCCTTTCCTACACCACCCCTATCCTACACC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=3685.000000
s hg38.chr4_KI270925v1_alt        199291 8 +    555799 AACCCTTC
s nomLeu3.chr7b                113765626 8 + 115148730 AACCCTTT
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188967105 8 + 189454096 AACCCTTT
i macFas5.chr5                 I 47 C 0
s chlSab2.chr7                 135325413 8 + 135778131 AACCCCTC
i chlSab2.chr7                 C 0 T 117
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=4891.000000
s hg38.chr4_KI270925v1_alt        199299 56 +    555799 CCTACCCCCCCCTTTCCTAC-CCCCCCCTTCCCTACACCACCCCTTCCCTACACCAC
s nomLeu3.chr7b                113765634 29 + 115148730 CCTA----------------------------CTACACCACCACTTTCCTACACTAC
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188967113 56 + 189454096 CCTACACCACCCTTTCCTACACCACCCCTTTCCTACACCACC-CTTTCCTATACCAC
i macFas5.chr5                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325421 117 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=26678.000000
s hg38.chr4_KI270925v1_alt        199355 63 +    555799 CCCTTTCCTACACCACCCCTTTCCTACACCAACCCTTCCCTACACC--CCCCCTTTCCTACACCA
s nomLeu3.chr7b                113765663 64 + 115148730 GC-TTTCCTGCACCACCCCTTTCCTACACCAACCTTTTCCTACTACAACACCCATTCCTACACCA
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188967169 63 + 189454096 CCCTTTCCTACACCACCCCTTTCCTACACCAACCCTTTCCTACACC--AACCCTTTCCTACACCA
i macFas5.chr5                 C 0 T 174
s chlSab2.chr7                 135325304 63 + 135778131 CCCTTTCCTACACCATCCCTTTCCTACACCATCCCTTTCCTACACC--ATCCCTTTCCTACACCA
i chlSab2.chr7                 T 117 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=6598.000000
s hg38.chr4_KI270925v1_alt        199418 26 +    555799 CCCTTTCCTACACCACCCCTTTCCTA
s nomLeu3.chr7b                113765727 26 + 115148730 CCCTTTCCTACACCAAGCCTTTCCTA
i nomLeu3.chr7b                C 0 C 0
s chlSab2.chr7                 135325367 26 + 135778131 CCCTTTCCTACACCACCCCTTTCCTA
i chlSab2.chr7                 C 0 T 89
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967232 174 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=-174.000000
s hg38.chr4_KI270925v1_alt        199444 25 +    555799 CACCACCACCCCTTTCCTACACCAC
s nomLeu3.chr7b                113765753  8 + 115148730 -----------------TTCACCAA
i nomLeu3.chr7b                C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325393 89 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967232 174 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=22697.000000
s hg38.chr4_KI270925v1_alt        199469 104 +    555799 CCCTTTCCTACACCACCCCTTTCCTACACCACCCCTTTCCTACACCAACCCTTCCCTACACCACCC-TTTCCTACACCACCCCTTTCCTACACCAACCCTTCCCT
s nomLeu3.chr7b                113765761 104 + 115148730 GCCTTTCCTACAGCA-CCCTTCCCTACACCACCCATTTCCTACACCAACACTTTGCTACAACACCCATTTCCTACACCACCCCTTTCCTACACCAACCCTTTTCT
i nomLeu3.chr7b                C 0 C 0
s chlSab2.chr7                 135325304 104 + 135778131 CCCTTTCCTACACCATCCCTTTCCTACACCATCCCTTTCCTACACCATCCCTTTCCTACACCACCC-TTTCCTACACCACCCCTTTCCTACACCACCCCTATCCT
i chlSab2.chr7                 T 89 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071   0 -  59632846 C
e calJac3.chr3                 190440882   0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967232 174 + 189454096 T
e rheMac3.chr5                 183582946   0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=1146.000000
s hg38.chr4_KI270925v1_alt        199573 2 +    555799 AC
s nomLeu3.chr7b                113765865 2 + 115148730 AC
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188967058 2 + 189454096 AC
i macFas5.chr5                 T 174 T 612
s chlSab2.chr7                 135325408 2 + 135778131 AC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=873.000000
s hg38.chr4_KI270925v1_alt        199575 3 +    555799 ACC
s nomLeu3.chr7b                113765867 3 + 115148730 ACC
i nomLeu3.chr7b                C 0 C 0
s chlSab2.chr7                 135325410 3 + 135778131 ACC
i chlSab2.chr7                 C 0 T 43
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967060 612 + 189454096 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=688.000000
s hg38.chr4_KI270925v1_alt        199578 12 +    555799 ACCCCTTTCCTC
s nomLeu3.chr7b                113765870 12 + 115148730 AACCCTCTCTTC
i nomLeu3.chr7b                C 0 T 294
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325413 43 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967060 612 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=541.000000
s hg38.chr4_KI270925v1_alt        199590 8 +    555799 TACACCAA
s nomLeu3.chr7b                113765588 8 + 115148730 TTCACCAA
i nomLeu3.chr7b                T 294 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325413 43 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967060 612 + 189454096 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38742 378 -     69473 T

a score=17500.000000
s hg38.chr4_KI270925v1_alt        199598 99 +    555799 CCCTTTCCTACACCAACCCTTTCCTACACCAACCCTTTCCTACACCAACCCTTTCCTACACCACCCCTTTCCTACACCAACCCTTTCCTACACCACCCC
s panTro4.chr4_GL389869_random     38364 99 -     69473 CTCTTTCCTACACCAAACCTTTCCTAAACCAAGCCTTTCCTACACCAAGCCTTTCCTACACCAAACTTTTCCTATACCACCCCTTCCCTACACCACACC
i panTro4.chr4_GL389869_random T 378 C 0
s nomLeu3.chr7b                113765596 85 + 115148730 CCCTTTCCTACACCACCCCTTTCCTACACCAACCCTTTCCTA-------------CTACACCACCACTTTCCTACACTA-CGCTTTCCTGCACCACCCC
i nomLeu3.chr7b                C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325413 43 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967060 612 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=11220.000000
s hg38.chr4_KI270925v1_alt        199697 23 +    555799 TTTCCTACACCAACCCTTCCCTA
s panTro4.chr4_GL389869_random     38463 23 -     69473 TTTCCTACACCAACCCTTGCCTA
i panTro4.chr4_GL389869_random C 0 C 0
s nomLeu3.chr7b                113765681 23 + 115148730 TTTCCTACACCAACCTTTTCCTA
i nomLeu3.chr7b                C 0 T 356
s chlSab2.chr7                 135325370 23 + 135778131 TTTCCTACACCACCCCTTTCCTA
i chlSab2.chr7                 T 43 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967060 612 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=8034.000000
s hg38.chr4_KI270925v1_alt        199720 19 +    555799 CACCACCCCTTTCCTACAC
s panTro4.chr4_GL389869_random     38486 19 -     69473 CACCAACACTTTCCTGCAC
i panTro4.chr4_GL389869_random C 0 C 0
s nomLeu3.chr7b                113765348 19 + 115148730 CAACACCCCTTTCCTACAC
i nomLeu3.chr7b                T 356 C 0
s chlSab2.chr7                 135325393 19 + 135778131 CACCACCCCTATCCTACAC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967060 612 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=4488.000000
s hg38.chr4_KI270925v1_alt        199739 23 +    555799 CAAACCCTTTCCTACACCAACCC
s nomLeu3.chr7b                113765367 22 + 115148730 C-ACCCCTTTCCTACACCAACCC
i nomLeu3.chr7b                C 0 C 0
s chlSab2.chr7                 135325412 23 + 135778131 CAACCCCTCTCCTACACCATCCC
i chlSab2.chr7                 C 0 I 10753
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967060 612 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38505  0 -     69473 C

a score=4091.000000
s hg38.chr4_KI270925v1_alt        199762 35 +    555799 TTTCCTACACCACCCCTTTCCTACACCACC-CTTTC
s nomLeu3.chr7b                113765389 23 + 115148730 TTTCCTA-------------CTACACCACCACTTTT
i nomLeu3.chr7b                C 0 I 292
s chlSab2.chr7                 135336188 35 + 135778131 TTTTCTACACCACCCCTGTCCTACACCACT-CTTTT
i chlSab2.chr7                 I 10753 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967060 612 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38505  0 -     69473 C

a score=21586.000000
s hg38.chr4_KI270925v1_alt        199797  98 +    555799 CTACACCACCCTTTCCTACACCACCCTTTCCTACACCAACCCTTCCCTA--CACC-ACCCCTTTCCTACACCA-CCCTTTCCTACACCACCCCTTTCCTACA
s nomLeu3.chr7b                113765704 100 + 115148730 CTACAACACCCATTCCTACACCACCCTTTCCTACACCAAGCCTTTCCTATTCACC-AAGCCTTTCCTACAGCA-CCCTTCCCTACACCACCCATTTCCTACA
i nomLeu3.chr7b                I 292 C 0
s chlSab2.chr7                 135336223 100 + 135778131 CTACACCACCCTTTCCTACACCACCCTTTCCTACACCAACCCTTTCCTA--CACCAACCCCTTTTCTACATCACCCCTTTCCTACACCACCCCTTTCCTACA
i chlSab2.chr7                 C 0 T 10907
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071   0 -  59632846 C
e calJac3.chr3                 190440882   0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967060 612 + 189454096 T
e rheMac3.chr5                 183582946   0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38505   0 -     69473 C

a score=368.000000
s hg38.chr4_KI270925v1_alt        199895 6 +    555799 CCAACC
s nomLeu3.chr7b                113765804 6 + 115148730 CCAACA
i nomLeu3.chr7b                C 0 T 554
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135336323 10907 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967060 612 + 189454096 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38505 0 -     69473 C

a score=1328.000000
s hg38.chr4_KI270925v1_alt        199901 14 +    555799 CTTTCCTACACCAA
s nomLeu3.chr7b                113765256 14 + 115148730 CTTTCCTACACCAA
i nomLeu3.chr7b                T 554 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135336323 10907 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967060 612 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38505  0 -     69473 C

a score=12489.000000
s hg38.chr4_KI270925v1_alt        199915 65 +    555799 CCCTTTCCTACACCACCCCTTTCCTACACCACCACCCCTTTCCTACACCA-CCCTTTCCTACACCA
s nomLeu3.chr7b                113765270 65 + 115148730 ACCTTTCCTACACCAACCCTTTGCTAT-TCACCAACCCTTTCCTAAACCACCCCTTTCCTACACCA
i nomLeu3.chr7b                C 0 C 0
s chlSab2.chr7                 135325416 63 + 135778131 CCCTCTCCTACACCATCCCTTTCCTAC---ACCACCCCTTTCTTACACCAACCCTTTCCTACACCA
i chlSab2.chr7                 T 10907 I 10832
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967060 612 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38505  0 -     69473 C

a score=9153.000000
s hg38.chr4_KI270925v1_alt        199980 59 +    555799 CCC-TTTCCTA--CACCACCCCTTCCCTACACCACCCCTTTCCTACACCAACCCTTCCCTAC
s nomLeu3.chr7b                113765335 62 + 115148730 CCCCTTTCCTATTCAACACCCCTTTCCTACACCACCCCTTTCCTACACCAACCCTTTCCTAC
i nomLeu3.chr7b                C 0 I 165
s chlSab2.chr7                 135336311 56 + 135778131 CCC-TTTCCTA--CATGACCCCAT-CCTACACCACCCC-ATCCTACACC-ACCCCATCCTAC
i chlSab2.chr7                 I 10832 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967060 612 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38505  0 -     69473 C

a score=101.000000
s hg38.chr4_KI270925v1_alt        200039 2 +    555799 ---AC
s chlSab2.chr7                 135336367 5 + 135778131 CCTAC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967060 612 + 189454096 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e nomLeu3.chr7b                113765397 165 + 115148730 I
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38505 0 -     69473 C

a score=300.000000
s hg38.chr4_KI270925v1_alt        200041 1 +    555799 C
s nomLeu3.chr7b                113765562 1 + 115148730 C
i nomLeu3.chr7b                I 165 C 0
s chlSab2.chr7                 135336372 1 + 135778131 C
i chlSab2.chr7                 C 0 T 11036
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967060 612 + 189454096 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38505 0 -     69473 C

a score=6275.000000
s hg38.chr4_KI270925v1_alt        200042 32 +    555799 CCTTTCCTACACCAACCCTTTCCTA--CACC-ACC
s nomLeu3.chr7b                113765563 35 + 115148730 TCTTTCCTACACCAACCCTTTGCTATTCACCAACC
i nomLeu3.chr7b                C 0 I 212
s chlSab2.chr7                 135325337 32 + 135778131 CCTTTCCTACACCATCCCTTTCCTA--CACC-ACC
i chlSab2.chr7                 T 11036 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967060 612 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38505  0 -     69473 C

a score=11772.000000
s hg38.chr4_KI270925v1_alt        200074 47 +    555799 CTTTCCTACACCACCCCTTTCCTACACCACCCCTTTCCTACACCAAC
s nomLeu3.chr7b                113765810 47 + 115148730 CTTTGCTACAACACCCATTTCCTACACCACCCCTTTCCTACACCAAC
i nomLeu3.chr7b                I 212 C 0
s chlSab2.chr7                 135325369 47 + 135778131 CTTTCCTACACCACCCCTTTCCTACACCACCCCTATCCTACACCAAC
i chlSab2.chr7                 C 0 T 79
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967060 612 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38505  0 -     69473 C

a score=4501.000000
s hg38.chr4_KI270925v1_alt        200121 30 +    555799 CCTTCCCTACACCACCCCT---TTCCTACC------CCA
s nomLeu3.chr7b                113765857 39 + 115148730 CCTTTTCTACACCAACCCTCTCTTCCTGCCTGCTCATCA
i nomLeu3.chr7b                C 0 C 0
s chlSab2.chr7                 135325337 30 + 135778131 CCTTTCCTACACCATCCCT---TTCCTACA------CCA
i chlSab2.chr7                 T 79 I 49
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967060 612 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38505  0 -     69473 C

a score=2409.000000
s hg38.chr4_KI270925v1_alt        200151 13 +    555799 CCCTTTCCTACAC
s nomLeu3.chr7b                113765896 13 + 115148730 TTCTGTCTTACAC
i nomLeu3.chr7b                C 0 T 445
s chlSab2.chr7                 135325416 13 + 135778131 CCCTCTCCTACAC
i chlSab2.chr7                 I 49 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967060 612 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38505  0 -     69473 C

a score=11866.000000
s hg38.chr4_KI270925v1_alt        200164 51 +    555799 CACCCCTTTCCTACACCACCCCTTTCCTACACCAACCCTTTCCTACACCAA
s nomLeu3.chr7b                113765464 51 + 115148730 TACCCCTTTCCTACACCAGCCCTTTCCTATACCACCCCTTTCCTACAGCAA
i nomLeu3.chr7b                T 445 T 640
s chlSab2.chr7                 135325429 51 + 135778131 CATCCCTTTCCTACACCACCCCTTTCTTACACCAACCCTTTCCTACACCAT
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967060 612 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38505  0 -     69473 C

a score=8813.000000
s hg38.chr4_KI270925v1_alt        200215 40 +    555799 CCCTTTCCTACACCACCCCTTTCCTACACCACCCCTTTCC
s nomLeu3.chr7b                113764875 40 + 115148730 CCCTTTCCTATACCACCCCTTTCCTACACCAACCTTTTCC
i nomLeu3.chr7b                T 640 C 0
s chlSab2.chr7                 135325480 40 + 135778131 CCCTTTCCTACACCACTCCTGTCGGACACCACCCCTCTCC
i chlSab2.chr7                 C 0 T 48
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967060 612 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38505  0 -     69473 C

a score=8029.000000
s hg38.chr4_KI270925v1_alt        200255 38 +    555799 TACACCAACCCTTCCCTACACCACCCCTTTCCTACACC
s nomLeu3.chr7b                113764915 38 + 115148730 TACACCAACCCTTTCCTACCCCACTTCTTTCCTACACC
i nomLeu3.chr7b                C 0 I 758
s chlSab2.chr7                 135325472 38 + 135778131 TACACCATCCCTTTCCTACACCACTCCTGTCGGACACC
i chlSab2.chr7                 T 48 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967060 612 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38505  0 -     69473 C

a score=1173.000000
s hg38.chr4_KI270925v1_alt        200293 4 +    555799 ACCC
s nomLeu3.chr7b                113765711 4 + 115148730 ACCC
i nomLeu3.chr7b                I 758 C 0
s chlSab2.chr7                 135325510 4 + 135778131 ACCC
i chlSab2.chr7                 C 0 T 177
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967060 612 + 189454096 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38505 0 -     69473 C

a score=2569.000000
s hg38.chr4_KI270925v1_alt        200297 41 +    555799 TTTCCTACACCACCCTTTCCTACACCAACCCTTCCCTACAC
s nomLeu3.chr7b                113765715 38 + 115148730 ATTCCTACACCACCCTTTCCTACACCAAGCCTTTCCTA---
i nomLeu3.chr7b                C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325514 177 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967060 612 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38505  0 -     69473 C

a score=100.000000
s hg38.chr4_KI270925v1_alt        200338 1 +    555799 C
s macFas5.chr5                 188966448 1 + 189454096 C
i macFas5.chr5                 T 612 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325514 177 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e nomLeu3.chr7b                113765753 0 + 115148730 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38505 0 -     69473 C

a score=28350.000000
s hg38.chr4_KI270925v1_alt        200339 61 +    555799 CCTTTCCTACACCAACCCTTTCCTACACCACCCTTTCCTACACCACCCCTTTCCTACACCA
s nomLeu3.chr7b                113765753 54 + 115148730 -------TTCACCAAGCCTTTCCTACAGCACCCTTCCCTACACCACCCATTTCCTACACCA
i nomLeu3.chr7b                C 0 T 454
s macFas5.chr5                 188966449 61 + 189454096 CCTTTCCTACACCAACCCTTTCCTACACCACCCTTTCCTATACCACCCCTTTCCTACACCA
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135325337 61 + 135778131 CCTTTCCTACACCATCCCTTTCCTACACCACCCTTTCCTACACCACCCCTTTCCTACACCA
i chlSab2.chr7                 T 177 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38505  0 -     69473 C

a score=18135.000000
s hg38.chr4_KI270925v1_alt        200400 39 +    555799 CCCCTTTCCTACACCAA-CCCTTCCCTACACCACCCCTTT
s nomLeu3.chr7b                113765353 39 + 115148730 CCCCTTTCCTACACCAC-CCCTTTCCTACACCAACCCTTT
i nomLeu3.chr7b                T 454 C 0
s macFas5.chr5                 188966510 39 + 189454096 CCCCTTTCCTACACCAA-CCCTTTCCTACACCAACCCTTT
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135325398 40 + 135778131 CCCCTATCCTACACCAACCCCTCTCCTACACCATCCCTTT
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38505  0 -     69473 C

a score=1974.000000
s hg38.chr4_KI270925v1_alt        200439 14 +    555799 CCTACCTACACCAC
s nomLeu3.chr7b                113765392 13 + 115148730 CCTA-CTACACCAC
i nomLeu3.chr7b                C 0 I 157
s chlSab2.chr7                 135325438 10 + 135778131 ----CCTACACCAC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966549  0 + 189454096 C
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38505  0 -     69473 C

a score=16183.000000
s hg38.chr4_KI270925v1_alt        200453 72 +    555799 CCCTTTCCTACACCAACCCTTTCCTA--CACCAACCCTTTCCTACACCACCCCTTTCCTACACCACCCCTTTCC
s nomLeu3.chr7b                113765562 74 + 115148730 CTCTTTCCTACACCAACCCTTTGCTATTCACCAACCCTTTCCTACACCACCCCTTTCCTACACCAACCCTTTCC
i nomLeu3.chr7b                I 157 C 0
s chlSab2.chr7                 135325448 72 + 135778131 CCCTTTCTTACACCAACCCTTTCCTA--CACCATCCCTTTCCTACACCACTCCTGTCGGACACCACCCCTCTCC
i chlSab2.chr7                 C 0 T 183
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966549  0 + 189454096 C
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38505  0 -     69473 C

a score=182.000000
s hg38.chr4_KI270925v1_alt        200525 2 +    555799 TA
s nomLeu3.chr7b                113765636 2 + 115148730 TA
i nomLeu3.chr7b                C 0 T 374
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325520 183 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966549 0 + 189454096 C
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38505 0 -     69473 C

a score=2290.000000
s hg38.chr4_KI270925v1_alt        200527 32 +    555799 CACCAACCCTTCCCTACACCACCCCTTTCCTA
s nomLeu3.chr7b                113765264 32 + 115148730 CACCAAACCTTTCCTACACCAACCCTTTGCTA
i nomLeu3.chr7b                T 374 I 342
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325520 183 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966549  0 + 189454096 C
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38505  0 -     69473 C

a score=0.000000
s hg38.chr4_KI270925v1_alt        200559 20 +    555799 CACCAACCCTTCCCTACACC
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325520 183 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966549  0 + 189454096 C
e rheMac3.chr5                 183582946  0 + 184069350 C
e nomLeu3.chr7b                113765296 342 + 115148730 I
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38505  0 -     69473 C

a score=573.000000
s hg38.chr4_KI270925v1_alt        200579 6 +    555799 CCTTTC
s chlSab2.chr7                 135325337 6 + 135778131 CCTTTC
i chlSab2.chr7                 T 183 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966549 0 + 189454096 C
e rheMac3.chr5                 183582946 0 + 184069350 C
e nomLeu3.chr7b                113765296 342 + 115148730 I
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38505 0 -     69473 C

a score=2292.000000
s hg38.chr4_KI270925v1_alt        200585 8 +    555799 CTACACCA
s nomLeu3.chr7b                113765638 8 + 115148730 CTACACCA
i nomLeu3.chr7b                I 342 C 0
s chlSab2.chr7                 135325343 8 + 135778131 CTACACCA
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966549 0 + 189454096 C
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38505 0 -     69473 C

a score=5985.000000
s hg38.chr4_KI270925v1_alt        200593 15 +    555799 ACCCTTTCCTACACC
s panTro4.chr4_GL389869_random     38505 15 -     69473 ACCCTTTCCTACAAC
i panTro4.chr4_GL389869_random C 0 C 0
s nomLeu3.chr7b                113765646 15 + 115148730 CCACTTTCCTACACT
i nomLeu3.chr7b                C 0 T 131
s chlSab2.chr7                 135325351 15 + 135778131 TCCCTTTCCTACACC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966549  0 + 189454096 C
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=21566.000000
s hg38.chr4_KI270925v1_alt        200608 48 +    555799 A-CCCTTTCCTACACCACCCCTTTCCTACACCACCCCTTTCCTACACCA
s panTro4.chr4_GL389869_random     38520 49 -     69473 ATCCCTTTcctacaccacccctttcctacaccaccccttccctacacca
i panTro4.chr4_GL389869_random C 0 C 0
s nomLeu3.chr7b                113765530 47 + 115148730 -AACCTTTCCTACACTACCCCTTTCCTACACCA-CTCTTTCCTACACCA
i nomLeu3.chr7b                T 131 C 0
s chlSab2.chr7                 135325366 48 + 135778131 -ACCCTTTCCTACACCACCCCTTTCCTACACCACCCCTATCCTACACCA
i chlSab2.chr7                 C 0 I 49
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966549  0 + 189454096 C
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=15228.000000
s hg38.chr4_KI270925v1_alt        200656 37 +    555799 ACCCTTTCCTA--CACCAACCCTTTCCTACACCACCCCT
s panTro4.chr4_GL389869_random     38569 36 -     69473 tcccttcccta--cacc-accctttcctacaccacctct
i panTro4.chr4_GL389869_random C 0 C 0
s nomLeu3.chr7b                113765577 39 + 115148730 ACCCTTTGCTATTCACCAACCCTTTCCTACACCACCCCT
i nomLeu3.chr7b                C 0 C 0
s chlSab2.chr7                 135325463 37 + 135778131 ACCCTTTCCTA--CACCATCCCTTTCCTACACCACTCCT
i chlSab2.chr7                 I 49 T 48
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966549  0 + 189454096 C
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=2445.000000
s hg38.chr4_KI270925v1_alt        200693 5 +    555799 TTCCT
s panTro4.chr4_GL389869_random     38605 5 -     69473 ttcct
i panTro4.chr4_GL389869_random C 0 C 0
s nomLeu3.chr7b                113765616 5 + 115148730 TTCCT
i nomLeu3.chr7b                C 0 T 668
s chlSab2.chr7                 135325452 5 + 135778131 TTCTT
i chlSab2.chr7                 T 48 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966549 0 + 189454096 C
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=3842.000000
s hg38.chr4_KI270925v1_alt        200698 11 +    555799 ACACCAACCCT
s panTro4.chr4_GL389869_random     38610 11 -     69473 acaccacccct
i panTro4.chr4_GL389869_random C 0 C 0
s nomLeu3.chr7b                113764953 11 + 115148730 AAACCTCTCCT
i nomLeu3.chr7b                T 668 I 807
s chlSab2.chr7                 135325457 11 + 135778131 ACACCAACCCT
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966549  0 + 189454096 C
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=1692.000000
s hg38.chr4_KI270925v1_alt        200709 6 +    555799 TTCCTA
s panTro4.chr4_GL389869_random     38621 6 -     69473 ttccta
i panTro4.chr4_GL389869_random C 0 C 0
s chlSab2.chr7                 135325468 6 + 135778131 TTCCTA
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966549 0 + 189454096 C
e rheMac3.chr5                 183582946 0 + 184069350 C
e nomLeu3.chr7b                113764964 807 + 115148730 I
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=2217.000000
s hg38.chr4_KI270925v1_alt        200715 5 +    555799 CACCA
s panTro4.chr4_GL389869_random     38627 5 -     69473 cacca
i panTro4.chr4_GL389869_random C 0 T 127
s nomLeu3.chr7b                113765771 5 + 115148730 CAGCA
i nomLeu3.chr7b                I 807 C 0
s chlSab2.chr7                 135325474 5 + 135778131 CACCA
i chlSab2.chr7                 C 0 I 1
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966549 0 + 189454096 C
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=1861.000000
s hg38.chr4_KI270925v1_alt        200720 11 +    555799 CCCTTTCCTAC
s nomLeu3.chr7b                113765776 10 + 115148730 CCCTTCCCTA-
i nomLeu3.chr7b                C 0 C 0
s chlSab2.chr7                 135325480 11 + 135778131 CCCTTTCCTAC
i chlSab2.chr7                 I 1 T 154
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966549  0 + 189454096 C
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38632 127 -     69473 T

a score=6547.000000
s hg38.chr4_KI270925v1_alt        200731 94 +    555799 CACCACCCCTTTCCTACACC-ACCCTTCCCTACACCACCCCTTCCCTACACCACCCCTTTCCTACACCACCCCTTTCCTACACCAACCCTTCCCT
s nomLeu3.chr7b                113765786 95 + 115148730 CACCACCCATTTCCTACACCAACACTTTGCTACAACACCCATTTCCTACACCACCCCTTTCCTACACCAACCCTTTTCTACACCAACCCTCTCTT
i nomLeu3.chr7b                C 0 T 389
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325491 154 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966549  0 + 189454096 C
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38632 127 -     69473 T

a score=60.000000
s hg38.chr4_KI270925v1_alt        200825 2 +    555799 AC
s nomLeu3.chr7b                113765492 2 + 115148730 AT
i nomLeu3.chr7b                T 389 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325491 154 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966549 0 + 189454096 C
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38632 127 -     69473 T

a score=1246.000000
s hg38.chr4_KI270925v1_alt        200827 8 +    555799 ACCACCCC
s nomLeu3.chr7b                113765494 8 + 115148730 ACCACCCC
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966549 8 + 189454096 CCTACACC
i macFas5.chr5                 C 0 I 732
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325491 154 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38632 127 -     69473 T

a score=2127.000000
s hg38.chr4_KI270925v1_alt        200835 26 +    555799 TTTCCTACACCAACCCTTCCCTACAC
s nomLeu3.chr7b                113765502 26 + 115148730 TTTCCTACAGCAACCCTTTCCTACAC
i nomLeu3.chr7b                C 0 T 542
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325491 154 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966557 732 + 189454096 I
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38632 127 -     69473 T

a score=100.000000
s hg38.chr4_KI270925v1_alt        200861 1 +    555799 C
s nomLeu3.chr7b                113764986 1 + 115148730 C
i nomLeu3.chr7b                T 542 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325491 154 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966557 732 + 189454096 I
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38632 127 -     69473 T

a score=19214.000000
s hg38.chr4_KI270925v1_alt        200862 76 +    555799 CCTTTCCTACACCACCCCTTTCCTACACCA-CCCTTTCCTACACCACCCCTTTCCTACACCACCCCTTTCCTACACC
s nomLeu3.chr7b                113764987 77 + 115148730 CCTTTCCTACAACACCCCTTTCCTACACCACCCCTTTCCTACACCACCCCTTTCCTACATCAACCCTTTCCTACACC
i nomLeu3.chr7b                C 0 C 0
s chlSab2.chr7                 135325337 76 + 135778131 CCTTTCCTACACCATCCCTTTCCTACACCA-CCCTTTCCTACACCACCCCTTTCCTACACCACCCCTATCCTACACC
i chlSab2.chr7                 T 154 I 1
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966557 732 + 189454096 I
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38632 127 -     69473 T

a score=445.000000
s hg38.chr4_KI270925v1_alt        200938 3 +    555799 ACC
s nomLeu3.chr7b                113765064 3 + 115148730 AAC
i nomLeu3.chr7b                C 0 I 546
s chlSab2.chr7                 135325414 3 + 135778131 ACC
i chlSab2.chr7                 I 1 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966557 732 + 189454096 I
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38632 127 -     69473 T

a score=3339.000000
s hg38.chr4_KI270925v1_alt        200941 14 +    555799 CCTTTCATACACCA
s nomLeu3.chr7b                113765613 14 + 115148730 CCTTTCCTACACCA
i nomLeu3.chr7b                I 546 C 0
s chlSab2.chr7                 135325417 14 + 135778131 CCTCTCCTACACCA
i chlSab2.chr7                 C 0 I 2
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966557 732 + 189454096 I
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38632 127 -     69473 T

a score=277.000000
s hg38.chr4_KI270925v1_alt        200955 5 +    555799 CCCCT
s nomLeu3.chr7b                113765627 5 + 115148730 ACCCT
i nomLeu3.chr7b                C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325431 2 + 135778131 I
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966557 732 + 189454096 I
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38632 127 -     69473 T

a score=14055.000000
s hg38.chr4_KI270925v1_alt        200960 73 +    555799 CCTTTCCTACACCACCCCTTTCCTACACCAACCCTTTCCTACACCAACCCTTTCCTACACCAACCCTTTCCTA
s nomLeu3.chr7b                113765632 72 + 115148730 TTCCTACTACACCACCACTTTCCTACACT-ACGCTTTCCTGCACCACCCCTTTCCTACACCAACCTTTTCCTA
i nomLeu3.chr7b                C 0 T 590
s chlSab2.chr7                 135325433 73 + 135778131 CCTTTCCTACACCACCCCTTTCTTACACCAACCCTTTCCTACACCATCCCTTTCCTACACCACTCCTGTCGGA
i chlSab2.chr7                 I 2 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966557 732 + 189454096 I
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38632 127 -     69473 T

a score=1233.000000
s hg38.chr4_KI270925v1_alt        201033 14 +    555799 CACCACCCCTTTCC
s chlSab2.chr7                 135325506 14 + 135778131 CACCACCCCTCTCC
i chlSab2.chr7                 C 0 I 10530
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966557 732 + 189454096 I
e rheMac3.chr5                 183582946  0 + 184069350 C
e nomLeu3.chr7b                113765704 590 + 115148730 T
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38632 127 -     69473 T

a score=0.000000
s hg38.chr4_KI270925v1_alt        201047 16 +    555799 TACACCACCCCTTTCC
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325520 10530 + 135778131 I
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966557 732 + 189454096 I
e rheMac3.chr5                 183582946  0 + 184069350 C
e nomLeu3.chr7b                113765704 590 + 115148730 T
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38632 127 -     69473 T

a score=-1660.000000
s hg38.chr4_KI270925v1_alt        201063  39 +    555799 TACACCACCCTTTCCACCACCCCTTTCCTACAC--------------------------------------------------------------------CACCCT
s macFas5.chr5                 188967289 103 + 189454096 T---CCTGCCTGCTCATCATTCC-CTCTTACACATGTTGGtctcactcaccctgggctccactccctatccctctccctcACATGGTCTTACAAACCAGGACACCTT
i macFas5.chr5                 I 732 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071   0 -  59632846 C
e calJac3.chr3                 190440882   0 - 190850796 C
e chlSab2.chr7                 135325520 10530 + 135778131 I
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946   0 + 184069350 C
e nomLeu3.chr7b                113765704 590 + 115148730 T
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38632 127 -     69473 T

a score=-45.000000
s hg38.chr4_KI270925v1_alt        201102 11 +    555799 --TTCCTACACCA
s macFas5.chr5                 188967392 12 + 189454096 CTGTTTCACATG-
i macFas5.chr5                 C 0 T 861
s chlSab2.chr7                 135336050 11 + 135778131 --ATCCTACACCA
i chlSab2.chr7                 I 10530 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e nomLeu3.chr7b                113765704 590 + 115148730 T
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38632 127 -     69473 T

a score=17398.000000
s hg38.chr4_KI270925v1_alt        201113 38 +    555799 CCCTTTCCTACACCACCCTTCCCTACACCACCCCTTTC
s nomLeu3.chr7b                113765114 38 + 115148730 CCCTTTCCTACACCACCCTTTCCTACACCACCCCTTCC
i nomLeu3.chr7b                T 590 I 244
s macFas5.chr5                 188966543 38 + 189454096 CCCTTTCCTACACCACCCTTCCCTACACCACCCCTTTC
i macFas5.chr5                 T 861 C 0
s chlSab2.chr7                 135336061 38 + 135778131 CCCCATCCTACACCACCCCATCCTACCCTACCCCTGTC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38632 127 -     69473 T

a score=4584.000000
s hg38.chr4_KI270925v1_alt        201151 8 +    555799 CTACACCA
s nomLeu3.chr7b                113765396 8 + 115148730 CTACACCA
i nomLeu3.chr7b                I 244 C 0
s macFas5.chr5                 188966581 8 + 189454096 CTACACCA
i macFas5.chr5                 C 0 I 482
s chlSab2.chr7                 135336099 8 + 135778131 CTACACCA
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38632 127 -     69473 T

a score=3227.000000
s hg38.chr4_KI270925v1_alt        201159 16 +    555799 CC-CTTTCCTACACCAC
s nomLeu3.chr7b                113765404 17 + 115148730 CCACTTTTCTACACTAC
i nomLeu3.chr7b                C 0 C 0
s chlSab2.chr7                 135336107 16 + 135778131 CC-CTTTCCTACACCAC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966589 482 + 189454096 I
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38632 127 -     69473 T

a score=600.000000
s hg38.chr4_KI270925v1_alt        201175 1 +    555799 C
s nomLeu3.chr7b                113765421 1 + 115148730 C
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188967071 1 + 189454096 C
i macFas5.chr5                 I 482 T 183
s chlSab2.chr7                 135336123 1 + 135778131 C
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38632 127 -     69473 T

a score=5310.000000
s hg38.chr4_KI270925v1_alt        201176 10 +    555799 CTTTCCTACA
s nomLeu3.chr7b                113765422 10 + 115148730 CTTTCCTGCA
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966889 10 + 189454096 CTTTCCTACA
i macFas5.chr5                 T 183 C 0
s chlSab2.chr7                 135336124 10 + 135778131 CTTTCCTACA
i chlSab2.chr7                 C 0 T 10830
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38632 127 -     69473 T

a score=8383.000000
s hg38.chr4_KI270925v1_alt        201186 36 +    555799 CCACCCCTTTCCTACACCAACCCTTCCCTACACCAA
s nomLeu3.chr7b                113765432 35 + 115148730 CCACCCCTTTCCTACACC-ACCCTTTCCTACACTAC
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966899 36 + 189454096 CCACCCCTTTCCTACACCAACCCTTTCCTACACCAA
i macFas5.chr5                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135336134 10830 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38632 127 -     69473 T

a score=3438.000000
s hg38.chr4_KI270925v1_alt        201222 6 +    555799 CCCTTT
s nomLeu3.chr7b                113765467 6 + 115148730 CCCTTT
i nomLeu3.chr7b                C 0 T 406
s macFas5.chr5                 188966935 6 + 189454096 CCCTTT
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135325304 6 + 135778131 CCCTTT
i chlSab2.chr7                 T 10830 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38632 127 -     69473 T

a score=1788.000000
s hg38.chr4_KI270925v1_alt        201228 6 +    555799 CCTACA
s nomLeu3.chr7b                113765067 6 + 115148730 CCTTTC
i nomLeu3.chr7b                T 406 C 0
s macFas5.chr5                 188966941 6 + 189454096 CCTACA
i macFas5.chr5                 C 0 T 358
s chlSab2.chr7                 135325310 6 + 135778131 CCTACA
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38632 127 -     69473 T

a score=649.000000
s hg38.chr4_KI270925v1_alt        201234 4 +    555799 CCAC
s nomLeu3.chr7b                113765073 4 + 115148730 CTAC
i nomLeu3.chr7b                C 0 I 561
s chlSab2.chr7                 135325316 4 + 135778131 CCAT
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966947 358 + 189454096 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38632 127 -     69473 T

a score=1256.000000
s hg38.chr4_KI270925v1_alt        201238 20 +    555799 CCATTCCCTACCCCACCCCT
s chlSab2.chr7                 135325320 20 + 135778131 CCCTTTCCTACACCATCCCT
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966947 358 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e nomLeu3.chr7b                113765077 561 + 115148730 I
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38632 127 -     69473 T

a score=546.000000
s hg38.chr4_KI270925v1_alt        201258 3 +    555799 -----TTC
s macFas5.chr5                 188966589 8 + 189454096 ACCCTTTC
i macFas5.chr5                 T 358 C 0
s chlSab2.chr7                 135325340 3 + 135778131 -----TTC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e nomLeu3.chr7b                113765077 561 + 115148730 I
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38632 127 -     69473 T

a score=3717.000000
s hg38.chr4_KI270925v1_alt        201261 13 +    555799 CTACACCACCCCT
s nomLeu3.chr7b                113765638 13 + 115148730 CTACACCACCACT
i nomLeu3.chr7b                I 561 C 0
s macFas5.chr5                 188966597  8 + 189454096 CTACACCA-----
i macFas5.chr5                 C 0 T 137
s chlSab2.chr7                 135325343 13 + 135778131 CTACACCATCCCT
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38632 127 -     69473 T

a score=12324.000000
s hg38.chr4_KI270925v1_alt        201274 27 +    555799 TCCCTACCCCACCCTTTCCCACACCAC
s nomLeu3.chr7b                113765651 27 + 115148730 TTCCTACACTACGCTTTCCTGCACCAC
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966468 27 + 189454096 TTCCTACACCACCCTTTCCTATACCAC
i macFas5.chr5                 T 137 C 0
s chlSab2.chr7                 135325356 27 + 135778131 TTCCTACACCACCCTTTCCTACACCAC
i chlSab2.chr7                 C 0 T 79
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38632 127 -     69473 T

a score=13545.000000
s hg38.chr4_KI270925v1_alt        201301 26 +    555799 CCCTTTCCTACACCAACCCTTTCCTA
s nomLeu3.chr7b                113765678 26 + 115148730 CCCTTTCCTACACCAACCTTTTCCTA
i nomLeu3.chr7b                C 0 T 179
s macFas5.chr5                 188966495 26 + 189454096 CCCTTTCCTACACCACCCCTTTCCTA
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135325304 26 + 135778131 CCCTTTCCTACACCATCCCTTTCCTA
i chlSab2.chr7                 T 79 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38632 127 -     69473 T

a score=7338.000000
s hg38.chr4_KI270925v1_alt        201327 15 +    555799 CACCAACCCTTTCCT
s nomLeu3.chr7b                113765525 15 + 115148730 CACCAAACCTTTCCT
i nomLeu3.chr7b                T 179 C 0
s macFas5.chr5                 188966521 15 + 189454096 CACCAACCCTTTCCT
i macFas5.chr5                 C 0 I 33
s chlSab2.chr7                 135325330 15 + 135778131 CACCATCCCTTTCCT
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38632 127 -     69473 T

a score=4416.000000
s hg38.chr4_KI270925v1_alt        201342 18 +    555799 ACACCACCCCTTTCCCAC
s nomLeu3.chr7b                113765540 18 + 115148730 ACACTACCCCTTTCCTAC
i nomLeu3.chr7b                C 0 T 464
s chlSab2.chr7                 135325345 18 + 135778131 ACACCATCCCTTTCCTAC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966536 33 + 189454096 I
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38632 127 -     69473 T

a score=2976.000000
s hg38.chr4_KI270925v1_alt        201360 15 +    555799 CCCACCCTTTCCCAC
s nomLeu3.chr7b                113765094 15 + 115148730 CCAACCTTTTCCTAC
i nomLeu3.chr7b                T 464 C 0
s chlSab2.chr7                 135325363 15 + 135778131 ACCACCCTTTCCTAC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966536 33 + 189454096 I
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38632 127 -     69473 T

a score=20133.000000
s hg38.chr4_KI270925v1_alt        201375 43 +    555799 ACCACCCCTTTCCTACACCAACCCTTTCCTACACCAACCCTTC
s nomLeu3.chr7b                113765109 42 + 115148730 ATCACCCCTTTCCTACACC-ACCCTTTCCTACACCACCCCTTC
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966569 43 + 189454096 ACCACCCCTTTCCTACACCAACCCTTTCCTACACCAACCCTTT
i macFas5.chr5                 I 33 C 0
s chlSab2.chr7                 135325378 43 + 135778131 ACCACCCCTTTCCTACACCACCCCTATCCTACACCAACCCCTC
i chlSab2.chr7                 C 0 T 63
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38632 127 -     69473 T

a score=21244.000000
s hg38.chr4_KI270925v1_alt        201418 55 +    555799 CCTACACCACCCTTTCCTACACCACCCCTTTCCTACACCAACCCTTCCCTACACC
s nomLeu3.chr7b                113765151 38 + 115148730 CCTACACCACCCTTTCCTACACCA-----------------CCCTTTCCGACACT
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966612 55 + 189454096 CCTACACCACCCTTCCCTACACCACCCCTTTCCTACACCAACCCTTTCCTACACC
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135325358 55 + 135778131 CCTACACCACCCTTTCCTACACCACCCCTTTCCTACACCACCCCTATCCTACACC
i chlSab2.chr7                 T 63 I 2
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38632 127 -     69473 T

a score=3283.000000
s hg38.chr4_KI270925v1_alt        201473 16 +    555799 ACCCCTTTCCTACACC
s nomLeu3.chr7b                113765189 16 + 115148730 ACCGCTTTCCTACACG
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966667 16 + 189454096 AACCCTTTCCTACACC
i macFas5.chr5                 C 0 T 63
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325413  2 + 135778131 I
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38632 127 -     69473 T

a score=91.000000
s hg38.chr4_KI270925v1_alt        201489 1 +    555799 A
s nomLeu3.chr7b                113765205 1 + 115148730 A
i nomLeu3.chr7b                C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325413 2 + 135778131 I
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966683 63 + 189454096 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38632 127 -     69473 T

a score=8694.000000
s hg38.chr4_KI270925v1_alt        201490 48 +    555799 ACCCTTCCCTACACCACCCCTTTCCTACACCAACCCTTTCCTACACCA
s nomLeu3.chr7b                113765206 31 + 115148730 A-----------------CCTTTCCTACACCAACCCTTTCCTACACCA
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966620 48 + 189454096 ACCCTTCCCTACACCACCCCTTTCCTACACCAACCCTTTCCTACACCA
i macFas5.chr5                 T 63 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325413  2 + 135778131 I
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38632 127 -     69473 T

a score=4620.000000
s hg38.chr4_KI270925v1_alt        201538 17 +    555799 CCCCTTTCCTACACCA-A
s nomLeu3.chr7b                113765237 17 + 115148730 CCCCTTTCCTACAGCA-A
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966668 16 + 189454096 ACCCTTTCCTACACCA--
i macFas5.chr5                 C 0 T 63
s chlSab2.chr7                 135325415 17 + 135778131 CCCCTCTCCTACACCAT-
i chlSab2.chr7                 I 2 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38632 127 -     69473 T

a score=15801.000000
s hg38.chr4_KI270925v1_alt        201555 31 +    555799 CCCTTTCCTACACCACCCCTTTCCTACACCA
s nomLeu3.chr7b                113765254 31 + 115148730 CCCTTTCCTACACCAAACCTTTCCTACACCA
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966621 31 + 189454096 CCCTTCCCTACACCACCCCTTTCCTACACCA
i macFas5.chr5                 T 63 C 0
s chlSab2.chr7                 135325432 31 + 135778131 CCCTTTCCTACACCACCCCTTTCTTACACCA
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38632 127 -     69473 T

a score=26074.000000
s hg38.chr4_KI270925v1_alt        201586 34 +    555799 ACCCTTTCCTA--CACCACCCCTTTCCTACACCACC
s panTro4.chr4_GL389869_random     38505 34 -     69473 ACCCTTTCCTA--CAACATCCCTTTcctacaccacc
i panTro4.chr4_GL389869_random T 127 C 0
s nomLeu3.chr7b                113765285 36 + 115148730 ACCCTTTGCTATTCACCAACCCTTTCCTAAACCACC
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966652 34 + 189454096 ACCCTTTCCTA--CACCAACCCTTTCCTACACCACC
i macFas5.chr5                 C 0 I 484
s chlSab2.chr7                 135325463 34 + 135778131 ACCCTTTCCTA--CACCATCCCTTTCCTACACCACT
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=13542.000000
s hg38.chr4_KI270925v1_alt        201620 23 +    555799 CCTTTCCTACACCACCCCTTTCC
s panTro4.chr4_GL389869_random     38539 15 -     69473 cctttcctacaccac--------
i panTro4.chr4_GL389869_random C 0 C 0
s nomLeu3.chr7b                113765321 23 + 115148730 CCTTTCCTACACCACCCCTTTCC
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188967170 23 + 189454096 CCTTTCCTACACCACCCCTTTCC
i macFas5.chr5                 I 484 C 0
s chlSab2.chr7                 135325497 23 + 135778131 CCTGTCGGACACCACCCCTCTCC
i chlSab2.chr7                 C 0 T 210
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=273.000000
s hg38.chr4_KI270925v1_alt        201643 1 +    555799 T
s nomLeu3.chr7b                113765344 1 + 115148730 T
i nomLeu3.chr7b                C 0 I 1
s macFas5.chr5                 188967193 1 + 189454096 T
i macFas5.chr5                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325520 210 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38554 0 -     69473 C

a score=664.000000
s hg38.chr4_KI270925v1_alt        201644 7 +    555799 ACACCAA
s macFas5.chr5                 188967194 7 + 189454096 ACACCAA
i macFas5.chr5                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325520 210 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e nomLeu3.chr7b                113765345 1 + 115148730 I
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38554 0 -     69473 C

a score=200.000000
s hg38.chr4_KI270925v1_alt        201651 2 +    555799 CC
s chlSab2.chr7                 135325310 2 + 135778131 CC
i chlSab2.chr7                 T 210 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967201 0 + 189454096 C
e rheMac3.chr5                 183582946 0 + 184069350 C
e nomLeu3.chr7b                113765345 1 + 115148730 I
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38554 0 -     69473 C

a score=26011.000000
s hg38.chr4_KI270925v1_alt        201653 50 +    555799 TACACCACCCCTTTCCTACACCAACCCTTCCCTACACC-AACCCTTTCCTA
s panTro4.chr4_GL389869_random     38554 26 -     69473 ------------------------cccttccctacacc-atcccttcccta
i panTro4.chr4_GL389869_random C 0 C 0
s nomLeu3.chr7b                113765346 50 + 115148730 TTCAACACCCCTTTCCTACACCACCCCTTTCCTACACC-AACCCTTTCCTA
i nomLeu3.chr7b                I 1 T 505
s macFas5.chr5                 188967201 43 + 189454096 --------CCCTTTCCTACACCAACCCTTTCCTACACCAACCCCTTTCCTA
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135325312 50 + 135778131 TACACCATCCCTTTCCTACACCATCCCTTTCCTACACC-ATCCCTTTCCTA
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=2892.000000
s hg38.chr4_KI270925v1_alt        201703 5 +    555799 CACCA
s panTro4.chr4_GL389869_random     38580 5 -     69473 cacca
i panTro4.chr4_GL389869_random C 0 C 0
s macFas5.chr5                 188967244 5 + 189454096 CACCA
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135325362 5 + 135778131 CACCA
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e nomLeu3.chr7b                113765396 505 + 115148730 T
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=25296.000000
s hg38.chr4_KI270925v1_alt        201708 31 +    555799 CCCTTTCCTACACCACCCCTTTCCTACACCA
s panTro4.chr4_GL389869_random     38585 31 -     69473 ccctttcctacaccacctctttcctacacca
i panTro4.chr4_GL389869_random C 0 C 0
s nomLeu3.chr7b                113764891 31 + 115148730 CCCTTTCCTACACCAACCTTTTCCTACACCA
i nomLeu3.chr7b                T 505 I 529
s macFas5.chr5                 188967249 31 + 189454096 CCCTTTCCTACACCACCCCTGTCGGACACCA
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135325367 31 + 135778131 CCCTTTCCTACACCACCCCTTTCCTACACCA
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=600.000000
s hg38.chr4_KI270925v1_alt        201739 1 +    555799 C
s panTro4.chr4_GL389869_random     38616 1 -     69473 c
i panTro4.chr4_GL389869_random C 0 C 0
s macFas5.chr5                 188967280 1 + 189454096 C
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135325398 1 + 135778131 C
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e nomLeu3.chr7b                113764922 529 + 115148730 I
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=9147.000000
s hg38.chr4_KI270925v1_alt        201740 14 +    555799 CCCTTTCCTACACC
s panTro4.chr4_GL389869_random     38617 14 -     69473 ccctttcctacacc
i panTro4.chr4_GL389869_random C 0 C 0
s nomLeu3.chr7b                113765451 14 + 115148730 CCCTTTCCTACACT
i nomLeu3.chr7b                I 529 C 0
s macFas5.chr5                 188967281 14 + 189454096 CCCTCTCCTCCTGC
i macFas5.chr5                 C 0 I 9
s chlSab2.chr7                 135325399 14 + 135778131 CCCTATCCTACACC
i chlSab2.chr7                 C 0 I 2
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=546.000000
s hg38.chr4_KI270925v1_alt        201754 1 +    555799 A
s panTro4.chr4_GL389869_random     38631 1 -     69473 a
i panTro4.chr4_GL389869_random C 0 C 0
s nomLeu3.chr7b                113765465 1 + 115148730 A
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188967304 1 + 189454096 A
i macFas5.chr5                 I 9 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325413 2 + 135778131 I
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=3951.000000
s hg38.chr4_KI270925v1_alt        201755 7 +    555799 CCCCTTT
s panTro4.chr4_GL389869_random     38632 7 -     69473 ccccttt
i panTro4.chr4_GL389869_random C 0 T 403
s nomLeu3.chr7b                113765466 7 + 115148730 CCCCTTT
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188967305 6 + 189454096 -TTCCCT
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135325415 7 + 135778131 CCCCTCT
i chlSab2.chr7                 I 2 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=9923.000000
s hg38.chr4_KI270925v1_alt        201762 49 +    555799 CCTACAC--------------CA--------CCCCTTTCATACACCACCCCTT-------TCCTAC--ACCA----CCCCTTTC
s nomLeu3.chr7b                113765473 49 + 115148730 CCTACAC--------------CA--------GCCCTTTCCTATACCACCCCTT-------TCCTAC--AGCA----ACCCTTTC
i nomLeu3.chr7b                C 0 T 177
s macFas5.chr5                 188967311 84 + 189454096 CTTACACATGTTGGtctcactcaccctgggctccactccctatccctctccctcACATGGTCTTACAAACCAGGACACCTTCTG
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135325422 49 + 135778131 CCTACAC--------------CA--------TCCCTTTCCTACACCACCCCTT-------TCTTAC--ACCA----ACCCTTTC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38639 403 -     69473 T

a score=6945.000000
s hg38.chr4_KI270925v1_alt        201811 24 +    555799 ATACACCACCCCT--TTCCTACACCA
s nomLeu3.chr7b                113765345 24 + 115148730 ATTCAACACCCCT--TTCCTACACCA
i nomLeu3.chr7b                T 177 C 0
s macFas5.chr5                 188967395 26 + 189454096 TTTCACATGCCCTAATCCTTACACCA
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135325471 24 + 135778131 CTACACCATCCCT--TTCCTACACCA
i chlSab2.chr7                 C 0 I 10689
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38639 403 -     69473 T

a score=8162.000000
s hg38.chr4_KI270925v1_alt        201835 24 +    555799 CCCCTTCCCTACACCACCCCTTTC
s nomLeu3.chr7b                113765369 24 + 115148730 CCCCTTTCCTACACCAACCCTTTC
i nomLeu3.chr7b                C 0 I 176
s macFas5.chr5                 188967421 23 + 189454096 -CCCCTACCCAAATCACCTCCCTC
i macFas5.chr5                 C 0 T 867
s chlSab2.chr7                 135336184 24 + 135778131 CCCCTTTTCTACACCACCCCTGTC
i chlSab2.chr7                 I 10689 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38639 403 -     69473 T

a score=4859.000000
s hg38.chr4_KI270925v1_alt        201859 30 +    555799 CTACACC-ACCCTTTCCTAC---CCCACCCTTTC
s nomLeu3.chr7b                113765569 34 + 115148730 CTACACCAACCCTTTGCTATTCACCAACCCTTTC
i nomLeu3.chr7b                I 176 I 152
s chlSab2.chr7                 135336208 30 + 135778131 CTACACC-ACTCTTTTCTAC---ACCACCCTTTC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967444 867 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38639 403 -     69473 T

a score=1064.000000
s hg38.chr4_KI270925v1_alt        201889 11 +    555799 CTACACCACCC
s chlSab2.chr7                 135336238 11 + 135778131 CTACACCACCC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967444 867 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e nomLeu3.chr7b                113765603 152 + 115148730 I
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38639 403 -     69473 T

a score=6305.000000
s hg38.chr4_KI270925v1_alt        201900 23 +    555799 TTTCCTACACCAACCCTTCCCTA
s macFas5.chr5                 188966577 23 + 189454096 TTTCCTACACCAACCCTTTCCTA
i macFas5.chr5                 T 867 C 0
s chlSab2.chr7                 135336249 23 + 135778131 TTTCCTACACCAACCCTTTCCTA
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e nomLeu3.chr7b                113765603 152 + 115148730 I
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38639 403 -     69473 T

a score=8161.000000
s hg38.chr4_KI270925v1_alt        201923 21 +    555799 CACCAC-CCCTTTCCTACACCA
s nomLeu3.chr7b                113765755 21 + 115148730 CACCAA-GCCTTTCCTACAGCA
i nomLeu3.chr7b                I 152 C 0
s macFas5.chr5                 188966600 21 + 189454096 CACCAA-CCCTTTCCTACACCA
i macFas5.chr5                 C 0 T 110
s chlSab2.chr7                 135336272 22 + 135778131 CACCAACCCCTTTTCTACATCA
i chlSab2.chr7                 C 0 I 1
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38639 403 -     69473 T

a score=14448.000000
s hg38.chr4_KI270925v1_alt        201944 28 +    555799 CCCTTTCCTACACCACCCCTTTCCTACA
s nomLeu3.chr7b                113765776 28 + 115148730 CCCTTCCCTACACCACCCATTTCCTACA
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966511 28 + 189454096 CCCTTTCCTACACCAACCCTTTCCTACA
i macFas5.chr5                 T 110 C 0
s chlSab2.chr7                 135336295 28 + 135778131 CCCTTTCCTACACCACCCCTTTCCTACA
i chlSab2.chr7                 I 1 T 10956
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38639 403 -     69473 T

a score=4151.000000
s hg38.chr4_KI270925v1_alt        201972 19 +    555799 CCAACCCTTTCCTACACCA
s nomLeu3.chr7b                113765804 19 + 115148730 CCAACACTTTGCTACAACA
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966539 19 + 189454096 CCAACCCTTTCCTACACCA
i macFas5.chr5                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135336323 10956 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38639 403 -     69473 T

a score=23271.000000
s hg38.chr4_KI270925v1_alt        201991 48 +    555799 CCC-TTTCCCACCCCACCCCTTTCCTACACCAACCCTTTCCTACACCAA
s nomLeu3.chr7b                113765823 49 + 115148730 CCCATTTCCTACACCACCCCTTTCCTACACCAACCCTTTTCTACACCAA
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966558 48 + 189454096 CCC-TTCCCTACACCACCCCTTTCCTACACCAACCCTTTCCTACACCAA
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135325367 48 + 135778131 CCC-TTTCCTACACCACCCCTTTCCTACACCACCCCTATCCTACACCAA
i chlSab2.chr7                 T 10956 I 10911
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38639 403 -     69473 T

a score=3366.000000
s hg38.chr4_KI270925v1_alt        202039 27 +    555799 CCCT---TTCCTG------CAACACCCTTTCCTACA
s nomLeu3.chr7b                113765872 36 + 115148730 CCCTCTCTTCCTGCCTGCTCATCATTCTGTCTTACA
i nomLeu3.chr7b                C 0 T 910
s macFas5.chr5                 188966606 27 + 189454096 CCCT---TTCCTA------CACCACCCTTCCCTACA
i macFas5.chr5                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325415 10911 + 135778131 I
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38639 403 -     69473 T

a score=474.000000
s hg38.chr4_KI270925v1_alt        202066 4 +    555799 ACAT
s nomLeu3.chr7b                113764998 4 + 115148730 ACAC
i nomLeu3.chr7b                T 910 C 0
s macFas5.chr5                 188966633 4 + 189454096 CCAC
i macFas5.chr5                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325415 10911 + 135778131 I
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38639 403 -     69473 T

a score=17419.000000
s hg38.chr4_KI270925v1_alt        202070 47 +    555799 CCCTTTCCTACACCACCCCTTTCCTACACCACCCCTTCCCTACACCA
s nomLeu3.chr7b                113765002 47 + 115148730 CCCTTTCCTACACCACCCCTTTCCTACACCACCCCTTTCCTACATCA
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966637 47 + 189454096 CCCTTTCCTACACCAACCCTTTCCTACACCAACCCTTTCCTACACCA
i macFas5.chr5                 C 0 I 46
s chlSab2.chr7                 135336326 45 + 135778131 CCCCATCCTACACC-ACCCCATCCTACACC-ACCCCATCCTACCCTA
i chlSab2.chr7                 I 10911 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38639 403 -     69473 T

a score=4522.000000
s hg38.chr4_KI270925v1_alt        202117 44 +    555799 CCCCTTTCCTACACCAACCCTTCCCTACAC--CCCTTTCCTACACC
s nomLeu3.chr7b                113765049 27 + 115148730 ACCCTTTCCTACACCAACCCTTTCCTA-------------------
i nomLeu3.chr7b                C 0 C 0
s chlSab2.chr7                 135336371 45 + 135778131 CCCCTGTCCTACACC-ACCCTTTCCTACACCACCCTTTCCTACACC
i chlSab2.chr7                 C 0 T 11112
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966684 46 + 189454096 I
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38639 403 -     69473 T

a score=252.000000
s hg38.chr4_KI270925v1_alt        202161 33 +    555799 AACCCTTTCCTACACCACCCCTTTCCTACAACA
s nomLeu3.chr7b                113765076 18 + 115148730 ---------------CACCACTTCTTTCCTACA
i nomLeu3.chr7b                C 0 I 299
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135336416 11112 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966684 46 + 189454096 I
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38639 403 -     69473 T

a score=0.000000
s hg38.chr4_KI270925v1_alt        202194 5 +    555799 CCCTT
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135336416 11112 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966684 46 + 189454096 I
e rheMac3.chr5                 183582946 0 + 184069350 C
e nomLeu3.chr7b                113765094 299 + 115148730 I
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38639 403 -     69473 T

a score=-62.000000
s hg38.chr4_KI270925v1_alt        202199 2 +    555799 TC
s nomLeu3.chr7b                113765393 2 + 115148730 CT
i nomLeu3.chr7b                I 299 I 1
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135336416 11112 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966684 46 + 189454096 I
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38639 403 -     69473 T

a score=0.000000
s hg38.chr4_KI270925v1_alt        202201 51 +    555799 CTACCCAACCCTTTCCTACACCCCTTTCCTCCACCAACCCTTTCCTCCCCC
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135336416 11112 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966684 46 + 189454096 I
e rheMac3.chr5                 183582946  0 + 184069350 C
e nomLeu3.chr7b                113765395  1 + 115148730 I
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38639 403 -     69473 T

a score=3074.000000
s hg38.chr4_KI270925v1_alt        202252 32 +    555799 CCCCTTTCCTACACCACCCTTTCCTACACCAC
s macFas5.chr5                 188966730 32 + 189454096 CCCCTTTCCTACACCACCCTTTCCTACACCAC
i macFas5.chr5                 I 46 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135336416 11112 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e nomLeu3.chr7b                113765395  1 + 115148730 I
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38639 403 -     69473 T

a score=9625.000000
s hg38.chr4_KI270925v1_alt        202284 39 +    555799 CCCTTTCCTACACCAACCCTTTCCTACACCACCCCTTTC
s macFas5.chr5                 188966762 39 + 189454096 CCCTTTCTTACACCACCCCTTTCCTACATCACCCCTTTT
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135325304 39 + 135778131 CCCTTTCCTACACCATCCCTTTCCTACACCATCCCTTTC
i chlSab2.chr7                 T 11112 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e nomLeu3.chr7b                113765395  1 + 115148730 I
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38639 403 -     69473 T

a score=19302.000000
s hg38.chr4_KI270925v1_alt        202323 38 +    555799 CTACACCACCCCTTTCCTACACCACCCTTTCCTACACC
s nomLeu3.chr7b                113765396 38 + 115148730 CTACACCACCACTTTTCTACACTACCCTTTCCTGCACC
i nomLeu3.chr7b                I 1 C 0
s macFas5.chr5                 188966801 38 + 189454096 CTATACCACCCCTTTCCTACACCACCCTTTCCTACACC
i macFas5.chr5                 C 0 I 376
s chlSab2.chr7                 135325343 38 + 135778131 CTACACCATCCCTTTCCTACACCACCCTTTCCTACACC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38639 403 -     69473 T

a score=546.000000
s hg38.chr4_KI270925v1_alt        202361 1 +    555799 A
s nomLeu3.chr7b                113765434 1 + 115148730 A
i nomLeu3.chr7b                C 0 I 95
s macFas5.chr5                 188967215 1 + 189454096 A
i macFas5.chr5                 I 376 C 0
s chlSab2.chr7                 135325381 1 + 135778131 A
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38639 403 -     69473 T

a score=14246.000000
s hg38.chr4_KI270925v1_alt        202362 32 +    555799 CCCCTTTCCTACACC-ACCCCTTCCCTACACCA
s nomLeu3.chr7b                113765530 32 + 115148730 AACCTTTCCTACACT-ACCCCTTTCCTACACCA
i nomLeu3.chr7b                I 95 C 0
s macFas5.chr5                 188967216 33 + 189454096 ACCCTTTCCTACACCAACCCCTTTCCTACACCA
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135325382 32 + 135778131 CCCCTTTCCTACACC-ACCCCTATCCTACACCA
i chlSab2.chr7                 C 0 T 47
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38639 403 -     69473 T

a score=16748.000000
s hg38.chr4_KI270925v1_alt        202394 41 +    555799 CCCTTTCCTACACCACCCCTTTCCTA--CACCACCCCTTCCCT
s nomLeu3.chr7b                113765562 43 + 115148730 CTCTTTCCTACACCAACCCTTTGCTATTCACCAACCCTTTCCT
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188967249 41 + 189454096 CCCTTTCCTACACCACCCCTGTCGGA--CACCACCCCTCTCCT
i macFas5.chr5                 C 0 T 556
s chlSab2.chr7                 135325367 41 + 135778131 CCCTTTCCTACACCACCCCTTTCCTA--CACCACCCCTATCCT
i chlSab2.chr7                 T 47 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38639 403 -     69473 T

a score=1446.000000
s hg38.chr4_KI270925v1_alt        202435 5 +    555799 ACACC
s nomLeu3.chr7b                113765605 5 + 115148730 ACACC
i nomLeu3.chr7b                C 0 C 0
s chlSab2.chr7                 135325408 5 + 135778131 ACACC
i chlSab2.chr7                 C 0 T 109
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967290 556 + 189454096 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38639 403 -     69473 T

a score=1514.000000
s hg38.chr4_KI270925v1_alt        202440 18 +    555799 CCCCCTTTCCTACACCAA
s nomLeu3.chr7b                113765610 18 + 115148730 ACCCCTTTCCTACACCAA
i nomLeu3.chr7b                C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325413 109 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967290 556 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38639 403 -     69473 T

a score=6580.000000
s hg38.chr4_KI270925v1_alt        202458 31 +    555799 CCCTTTC---CTACACCACCCCTTTCCTACCCCA
s nomLeu3.chr7b                113765628 34 + 115148730 CCCTTTCCTACTACACCACCACTTTCCTACACTA
i nomLeu3.chr7b                C 0 T 179
s chlSab2.chr7                 135325304 31 + 135778131 CCCTTTC---CTACACCATCCCTTTCCTACACCA
i chlSab2.chr7                 T 109 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967290 556 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38639 403 -     69473 T

a score=2075.000000
s hg38.chr4_KI270925v1_alt        202489 32 +    555799 CCCCTTCCCTCCACCACCCCTTTCCTCCCCCA
s chlSab2.chr7                 135325335 32 + 135778131 TCCCTTTCCTACACCATCCCTTTCCTACACCA
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967290 556 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e nomLeu3.chr7b                113765662 179 + 115148730 T
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38639 403 -     69473 T

a score=11820.000000
s hg38.chr4_KI270925v1_alt        202521 58 +    555799 CCCTTTCCTACACCACCCCTTTCCTACACCACCCCTTTCCTACACCACCCCTTT-----------CCCT
s nomLeu3.chr7b                113765483 69 + 115148730 CCCTTTCCTATACCACCCCTTTCCTACAGCAACCCTTTCCTACACCAAACCTTTCCTACACTACCCCTT
i nomLeu3.chr7b                T 179 I 110
s chlSab2.chr7                 135325367 58 + 135778131 CCCTTTCCTACACCACCCCTTTCCTACACCACCCCTATCCTACACCAACCCCTC-----------TCCT
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967290 556 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38639 403 -     69473 T

a score=573.000000
s hg38.chr4_KI270925v1_alt        202579 6 +    555799 ACACCA
s chlSab2.chr7                 135325425 6 + 135778131 ACACCA
i chlSab2.chr7                 C 0 T 127
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967290 556 + 189454096 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e nomLeu3.chr7b                113765552 110 + 115148730 I
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38639 403 -     69473 T

a score=0.000000
s hg38.chr4_KI270925v1_alt        202585 3 +    555799 CCC
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325431 127 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967290 556 + 189454096 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e nomLeu3.chr7b                113765552 110 + 115148730 I
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38639 403 -     69473 T

a score=1137.000000
s hg38.chr4_KI270925v1_alt        202588 12 +    555799 TTTCCTACACCA
s macFas5.chr5                 188966734 12 + 189454096 TTTCCTACACCA
i macFas5.chr5                 T 556 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325431 127 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e nomLeu3.chr7b                113765552 110 + 115148730 I
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38639 403 -     69473 T

a score=3773.000000
s hg38.chr4_KI270925v1_alt        202600 16 +    555799 CCCTTTCCTACACCCC
s panTro4.chr4_GL389869_random     38236 16 -     69473 ccctttcctacaccaa
i panTro4.chr4_GL389869_random T 403 C 0
s macFas5.chr5                 188966746 16 + 189454096 CCCTTTCCTACACCAC
i macFas5.chr5                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325431 127 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e nomLeu3.chr7b                113765552 110 + 115148730 I
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=23940.000000
s hg38.chr4_KI270925v1_alt        202616 60 +    555799 CCCTTTCCTACACCACCCCTTTCCTACACCAACCCTTCCCTACACCA--CCCCTTTCCTACA
s panTro4.chr4_GL389869_random     38252 60 -     69473 acctttcctacaccaaccctttcctacaccacccctttcctacacca--accccttcgtaca
i panTro4.chr4_GL389869_random C 0 C 0
s nomLeu3.chr7b                113765662 62 + 115148730 CGCTTTCCTGCACCACCCCTTTCCTACACCAACCTTTTCCTACTACAACACCCATTCCTACA
i nomLeu3.chr7b                I 110 C 0
s macFas5.chr5                 188966762 60 + 189454096 CCCTTTCTTACACCACCCCTTTCCTACATCACCCCTTTTCTATACCA--CCCCTTTCCTACA
i macFas5.chr5                 C 0 I 17
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325431 127 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=4294.000000
s hg38.chr4_KI270925v1_alt        202676 26 +    555799 CCACCCCTTTCCTACACCAACCCTTC
s panTro4.chr4_GL389869_random     38312 26 -     69473 ccaaatctttcctacatcaacctttt
i panTro4.chr4_GL389869_random C 0 I 294
s nomLeu3.chr7b                113765724 25 + 115148730 CCA-CCCTTTCCTACACCAAGCCTTT
i nomLeu3.chr7b                C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325431 127 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966822 17 + 189454096 I
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=2952.000000
s hg38.chr4_KI270925v1_alt        202702 90 +    555799 CCTA--CACCAACCCTTTCCTACACCACCCCTTTCCTACACCAACCCTTTCCTACACCAACCCTTCCCTACACCACCCCTTTCCTACACCAA
s nomLeu3.chr7b                113765749 59 + 115148730 CCTATTCACCAAGCCTTTCCTACAGC---------------------------------ACCCTTCCCTACACCACCCATTTCCTACACCAA
i nomLeu3.chr7b                C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325431 127 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966822 17 + 189454096 I
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38338 294 -     69473 I

a score=3515.000000
s hg38.chr4_KI270925v1_alt        202792 19 +    555799 CCCTTTCCTACACCACCCC
s nomLeu3.chr7b                113765808 19 + 115148730 CACTTTGCTACAACACCCA
i nomLeu3.chr7b                C 0 T 212
s chlSab2.chr7                 135325304 19 + 135778131 CCCTTTCCTACACCATCCC
i chlSab2.chr7                 T 127 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966822 17 + 189454096 I
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38338 294 -     69473 I

a score=10452.000000
s hg38.chr4_KI270925v1_alt        202811 47 +    555799 TTTCCTACACCAACCCTTCC---CTACACCACCCCTTTCCTACACCACCC
s nomLeu3.chr7b                113765615 50 + 115148730 TTTCCTACACCAACCCTTTCCTACTACACCACCACTTTCCTACACTACGC
i nomLeu3.chr7b                T 212 I 162
s chlSab2.chr7                 135325323 47 + 135778131 TTTCCTACACCATCCCTTTC---CTACACCATCCCTTTCCTACACCACCC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966822 17 + 189454096 I
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38338 294 -     69473 I

a score=8022.000000
s hg38.chr4_KI270925v1_alt        202858 28 +    555799 TTTCCTACACCACCCCTTTCCTACACCA
s nomLeu3.chr7b                113765827 28 + 115148730 TTTCCTACACCACCCCTTTCCTACACCA
i nomLeu3.chr7b                I 162 C 0
s chlSab2.chr7                 135325370 28 + 135778131 TTTCCTACACCACCCCTTTCCTACACCA
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966822 17 + 189454096 I
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38338 294 -     69473 I

a score=8064.000000
s hg38.chr4_KI270925v1_alt        202886 17 +    555799 ACCCTTTCCTACACCAA
s nomLeu3.chr7b                113765855 17 + 115148730 ACCCTTTTCTACACCAA
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966839 17 + 189454096 ACCCTTTCCTACACCAA
i macFas5.chr5                 I 17 C 0
s chlSab2.chr7                 135325398 17 + 135778131 CCCCTATCCTACACCAA
i chlSab2.chr7                 C 0 I 16
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38338 294 -     69473 I

a score=551.000000
s hg38.chr4_KI270925v1_alt        202903 7 +    555799 CCCTTTC
s nomLeu3.chr7b                113765872 7 + 115148730 CCCTCTC
i nomLeu3.chr7b                C 0 T 444
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325415 16 + 135778131 I
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966856 0 + 189454096 C
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38338 294 -     69473 I

a score=0.000000
s hg38.chr4_KI270925v1_alt        202910 8 +    555799 CTGCGCCC
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325415 16 + 135778131 I
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966856 0 + 189454096 C
e rheMac3.chr5                 183582946 0 + 184069350 C
e nomLeu3.chr7b                113765879 444 + 115148730 T
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38338 294 -     69473 I

a score=14457.000000
s hg38.chr4_KI270925v1_alt        202918 16 +    555799 CCCCTTTCCTACACCA
s panTro4.chr4_GL389869_random     38632 16 -     69473 cccctttcctacacca
i panTro4.chr4_GL389869_random I 294 T 9
s nomLeu3.chr7b                113765435 16 + 115148730 CCCCTTTCCTACACCA
i nomLeu3.chr7b                T 444 C 0
s macFas5.chr5                 188966856 15 + 189454096 -CCCTTTCCTACACCA
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135325431 16 + 135778131 TCCCTTTCCTACACCA
i chlSab2.chr7                 I 16 T 80
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=8436.000000
s hg38.chr4_KI270925v1_alt        202934 16 +    555799 CCCTTTCCTACACCAC
s nomLeu3.chr7b                113765451 16 + 115148730 CCCTTTCCTACACTAC
i nomLeu3.chr7b                C 0 I 260
s macFas5.chr5                 188966871 16 + 189454096 CCCTTTCCTATACCAC
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135325367 16 + 135778131 CCCTTTCCTACACCAC
i chlSab2.chr7                 T 80 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38648  9 -     69473 T

a score=8580.000000
s hg38.chr4_KI270925v1_alt        202950 16 +    555799 CCCTTTCCTACACCAC
s nomLeu3.chr7b                113765727 16 + 115148730 CCCTTTCCTACACCAA
i nomLeu3.chr7b                I 260 C 0
s macFas5.chr5                 188966887 16 + 189454096 CCCTTTCCTACACCAC
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135325383 16 + 135778131 CCCTTTCCTACACCAC
i chlSab2.chr7                 C 0 T 95
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38648  9 -     69473 T

a score=8945.000000
s hg38.chr4_KI270925v1_alt        202966 38 +    555799 CCCTTTCCTA--CACCACCCCTTTCCTACACCAACCCTTC
s nomLeu3.chr7b                113765743 39 + 115148730 GCCTTTCCTATTCACCAAGCCTTTCCTACAGC-ACCCTTC
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966903 22 + 189454096 ------------------CCCTTTCCTACACCAACCCTTT
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135325304 38 + 135778131 CCCTTTCCTA--CACCATCCCTTTCCTACACCATCCCTTT
i chlSab2.chr7                 T 95 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38648  9 -     69473 T

a score=22789.000000
s hg38.chr4_KI270925v1_alt        203004 36 +    555799 CCTACACCACCCCTTTCCTACACC-ACCCTTTCCTAC
s panTro4.chr4_GL389869_random     38639 36 -     69473 cctacaccacccctttcctacacc-accctttcctac
i panTro4.chr4_GL389869_random T 9 C 0
s nomLeu3.chr7b                113765782 37 + 115148730 CCTACACCACCCATTTCCTACACCAACACTTTGCTAC
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966925 26 + 189454096 CCTACACCAACCCTTTCCTACACC-AC----------
i macFas5.chr5                 C 0 T 390
s chlSab2.chr7                 135325342 36 + 135778131 CCTACACCATCCCTTTCCTACACC-ACCCTTTCCTAC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=16281.000000
s hg38.chr4_KI270925v1_alt        203040 35 +    555799 ACCACCCCTTTCCTACACCACCCCTTTCCTACACC
s panTro4.chr4_GL389869_random     38675 34 -     69473 accacccctttcctatacca-ccctttcctacacc
i panTro4.chr4_GL389869_random C 0 C 0
s nomLeu3.chr7b                113765819 35 + 115148730 AACACCCATTTCCTACACCACCCCTTTCCTACACC
i nomLeu3.chr7b                C 0 C 0
s chlSab2.chr7                 135325378 35 + 135778131 ACCACCCCTTTCCTACACCACCCCTATCCTACACC
i chlSab2.chr7                 C 0 I 1
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966951 390 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=11964.000000
s hg38.chr4_KI270925v1_alt        203075 27 +    555799 ACCCCTTTCCTACACCAACCCTTCCCT
s panTro4.chr4_GL389869_random     38709 27 -     69473 acccctttcctgcaccaaccctttcct
i panTro4.chr4_GL389869_random C 0 C 0
s nomLeu3.chr7b                113765854 27 + 115148730 AACCCTTTTCTACACCAACCCTCTCTT
i nomLeu3.chr7b                C 0 T 276
s chlSab2.chr7                 135325414 27 + 135778131 ACCCCTCTCCTACACCATCCCTTTCCT
i chlSab2.chr7                 I 1 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966951 390 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=5742.000000
s hg38.chr4_KI270925v1_alt        203102 11 +    555799 ACACCACCCCT
s panTro4.chr4_GL389869_random     38736 11 -     69473 acaccaaccct
i panTro4.chr4_GL389869_random C 0 T 98
s nomLeu3.chr7b                113765605 11 + 115148730 ACACCACCCCT
i nomLeu3.chr7b                T 276 C 0
s chlSab2.chr7                 135325441 11 + 135778131 ACACCACCCCT
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966951 390 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=5770.000000
s hg38.chr4_KI270925v1_alt        203113 22 +    555799 TTCCTACACCAACCCTTCCCTA
s nomLeu3.chr7b                113765616 22 + 115148730 TTCCTACACCAACCCTTTCCTA
i nomLeu3.chr7b                C 0 T 374
s chlSab2.chr7                 135325452 22 + 135778131 TTCTTACACCAACCCTTTCCTA
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966951 390 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38747 98 -     69473 T

a score=873.000000
s hg38.chr4_KI270925v1_alt        203135 3 +    555799 CAC
s nomLeu3.chr7b                113765264 3 + 115148730 CAC
i nomLeu3.chr7b                T 374 C 0
s chlSab2.chr7                 135325474 3 + 135778131 CAC
i chlSab2.chr7                 C 0 T 173
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966951 390 + 189454096 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38747 98 -     69473 T

a score=2583.000000
s hg38.chr4_KI270925v1_alt        203138 46 +    555799 C---CCTTTCCTACACCAACCCTTTCCTA--CACC-ACCCTTTCCTACACCA
s nomLeu3.chr7b                113765267 52 + 115148730 CAAACCTTTCCTACACCAACCCTTTGCTATTCACCAACCCTTTCCTAAACCA
i nomLeu3.chr7b                C 0 I 148
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325477 173 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966951 390 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38747 98 -     69473 T

a score=2718.000000
s hg38.chr4_KI270925v1_alt        203184 32 +    555799 CCCTTTCCTACACCACCCCTTTCCTACACCAC
s nomLeu3.chr7b                113765467 32 + 115148730 CCCTTTCCTACACCAGCCCTTTCCTATACCAC
i nomLeu3.chr7b                I 148 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325477 173 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966951 390 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38747 98 -     69473 T

a score=900.000000
s hg38.chr4_KI270925v1_alt        203216 3 +    555799 CCC
s nomLeu3.chr7b                113765499 3 + 115148730 CCC
i nomLeu3.chr7b                C 0 C 0
s chlSab2.chr7                 135325304 3 + 135778131 CCC
i chlSab2.chr7                 T 173 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966951 390 + 189454096 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38747 98 -     69473 T

a score=43127.000000
s hg38.chr4_KI270925v1_alt        203219 91 +    555799 TTTCCTACACCAACCCTTCCCTACACCACCCCTTTCCTACACCACCCCTTCCCTACACCACCCTTTCCTACACCACCCCTTTCCTA--CACCA
s nomLeu3.chr7b                113765502 93 + 115148730 TTTCCTACAGCAACCCTTTCCTACACCAAACCTTTCCTACACTACCCCTTTCCTACACCACTCTTTCCTACACCAACCCTTTGCTATTCACCA
i nomLeu3.chr7b                C 0 T 467
s macFas5.chr5                 188966561 91 + 189454096 TTCCCTACACCACCCCTTTCCTACACCAACCCTTTCCTACACCAACCCTTTCCTACACCACCCTTCCCTACACCACCCCTTTCCTA--CACCA
i macFas5.chr5                 T 390 C 0
s chlSab2.chr7                 135325307 91 + 135778131 TTTCCTACACCATCCCTTTCCTACACCATCCCTTTCCTACACCATCCCTTTCCTACACCACCCTTTCCTACACCACCCCTTTCCTA--CACCA
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38747 98 -     69473 T

a score=2056.000000
s hg38.chr4_KI270925v1_alt        203310 11 +    555799 ACCCTTCCCTA
s macFas5.chr5                 188966652 11 + 189454096 ACCCTTTCCTA
i macFas5.chr5                 C 0 I 409
s chlSab2.chr7                 135325398 11 + 135778131 CCCCTATCCTA
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e nomLeu3.chr7b                113765595 467 + 115148730 T
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38747 98 -     69473 T

a score=300.000000
s hg38.chr4_KI270925v1_alt        203321 1 +    555799 C
s macFas5.chr5                 188967072 1 + 189454096 C
i macFas5.chr5                 I 409 C 0
s chlSab2.chr7                 135325409 1 + 135778131 C
i chlSab2.chr7                 C 0 T 73
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e nomLeu3.chr7b                113765595 467 + 115148730 T
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38747 98 -     69473 T

a score=582.000000
s hg38.chr4_KI270925v1_alt        203322 6 +    555799 ACCCCT
s macFas5.chr5                 188967073 6 + 189454096 ACCCCT
i macFas5.chr5                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325410 73 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e nomLeu3.chr7b                113765595 467 + 115148730 T
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38747 98 -     69473 T

a score=-155.000000
s hg38.chr4_KI270925v1_alt        203328 1 +    555799 T
s nomLeu3.chr7b                113765128 1 + 115148730 A
i nomLeu3.chr7b                T 467 I 575
s macFas5.chr5                 188967079 1 + 189454096 T
i macFas5.chr5                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325410 73 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38747 98 -     69473 T

a score=382.000000
s hg38.chr4_KI270925v1_alt        203329 4 +    555799 TCCT
s macFas5.chr5                 188967080 4 + 189454096 TCCT
i macFas5.chr5                 C 0 T 414
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325410 73 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e nomLeu3.chr7b                113765129 575 + 115148730 I
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38747 98 -     69473 T

a score=0.000000
s hg38.chr4_KI270925v1_alt        203333 30 +    555799 ACACCAACCCTTTCCTACACCACCCCTTTC
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325410 73 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967084 414 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e nomLeu3.chr7b                113765129 575 + 115148730 I
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38747 98 -     69473 T

a score=2805.000000
s hg38.chr4_KI270925v1_alt        203363 36 +    555799 CTACAACACCCTTTCCTACCCAACCCTTTCCTACAC
s nomLeu3.chr7b                113765704 36 + 115148730 CTACAACACCCATTCCTACACCACCCTTTCCTACAC
i nomLeu3.chr7b                I 575 T 611
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325410 73 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967084 414 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38747 98 -     69473 T

a score=100.000000
s hg38.chr4_KI270925v1_alt        203399 1 +    555799 C
s nomLeu3.chr7b                113765129 1 + 115148730 C
i nomLeu3.chr7b                T 611 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325410 73 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967084 414 + 189454096 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38747 98 -     69473 T

a score=12121.000000
s hg38.chr4_KI270925v1_alt        203400 45 +    555799 CCTTTCCTACACCAACCCTTTCCTACACCACCCTTTCCTACACCA
s nomLeu3.chr7b                113765130 45 + 115148730 CCTTTCCTACACCACCCCTTCCCTACACCACCCTTTCCTACACCA
i nomLeu3.chr7b                C 0 I 616
s chlSab2.chr7                 135325337 45 + 135778131 CCTTTCCTACACCATCCCTTTCCTACACCACCCTTTCCTACACCA
i chlSab2.chr7                 T 73 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967084 414 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38747 98 -     69473 T

a score=6359.000000
s hg38.chr4_KI270925v1_alt        203445 31 +    555799 CCCCTTTCCTACACCACCCCTTTCCTACACC
s nomLeu3.chr7b                113765791 31 + 115148730 CCCATTTCCTACACCAACACTTTGCTACAAC
i nomLeu3.chr7b                I 616 C 0
s chlSab2.chr7                 135325382 31 + 135778131 CCCCTTTCCTACACCACCCCTATCCTACACC
i chlSab2.chr7                 C 0 T 79
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967084 414 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38747 98 -     69473 T

a score=311.000000
s hg38.chr4_KI270925v1_alt        203476 2 +    555799 AC
s nomLeu3.chr7b                113765822 2 + 115148730 AC
i nomLeu3.chr7b                C 0 T 649
s chlSab2.chr7                 135325334 2 + 135778131 AT
i chlSab2.chr7                 T 79 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967084 414 + 189454096 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38747 98 -     69473 T

a score=300.000000
s hg38.chr4_KI270925v1_alt        203478 1 +    555799 C
s nomLeu3.chr7b                113765175 1 + 115148730 C
i nomLeu3.chr7b                T 649 C 0
s chlSab2.chr7                 135325336 1 + 135778131 C
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967084 414 + 189454096 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38747 98 -     69473 T

a score=5213.000000
s hg38.chr4_KI270925v1_alt        203479 18 +    555799 CCTTCCCTACACCACCCC
s nomLeu3.chr7b                113765176 18 + 115148730 CCTTTCCGACACTACCGC
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966670 13 + 189454096 CCTTTCCTACACC-----
i macFas5.chr5                 T 414 I 35
s chlSab2.chr7                 135325337 18 + 135778131 CCTTTCCTACACCATCCC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38747 98 -     69473 T

a score=6571.000000
s hg38.chr4_KI270925v1_alt        203497 26 +    555799 TTTCCTACACCACCCTTTCCTACACC
s nomLeu3.chr7b                113765194 26 + 115148730 TTTCCTACACGAACCTTTCCTACACC
i nomLeu3.chr7b                C 0 I 375
s chlSab2.chr7                 135325355 26 + 135778131 TTTCCTACACCACCCTTTCCTACACC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966683 35 + 189454096 I
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38747 98 -     69473 T

a score=273.000000
s hg38.chr4_KI270925v1_alt        203523 1 +    555799 A
s nomLeu3.chr7b                113765595 1 + 115148730 A
i nomLeu3.chr7b                I 375 C 0
s chlSab2.chr7                 135325381 1 + 135778131 A
i chlSab2.chr7                 C 0 T 78
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966683 35 + 189454096 I
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38747 98 -     69473 T

a score=977.000000
s hg38.chr4_KI270925v1_alt        203524 109 +    555799 CCCTTTCCTACACCACCCCTTTCCTACACCTCCCCTTTCCTACACCAACCCTTCCCTACCCCATTTCCAATCTCCAACCCTTTCCTACACCAACCCTTTCCTACACCAA
s nomLeu3.chr7b                113765596  42 + 115148730 CCCTTTCCTACACCACCCCTTTCCTACACCAACCCTTT-------------------------------------------------------------------CCTA
i nomLeu3.chr7b                C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071   0 -  59632846 C
e calJac3.chr3                 190440882   0 - 190850796 C
e chlSab2.chr7                 135325382  78 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966683  35 + 189454096 I
e rheMac3.chr5                 183582946   0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38747  98 -     69473 T

a score=300.000000
s hg38.chr4_KI270925v1_alt        203633 1 +    555799 C
s nomLeu3.chr7b                113765638 1 + 115148730 C
i nomLeu3.chr7b                C 0 T 352
s chlSab2.chr7                 135325304 1 + 135778131 C
i chlSab2.chr7                 T 78 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966683 35 + 189454096 I
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38747 98 -     69473 T

a score=13076.000000
s hg38.chr4_KI270925v1_alt        203634 59 +    555799 CCTTTCCTA--CACCAACCCTTTCCTACACCACCCCTTTCATACACCACCCCTTTCCTACA
s nomLeu3.chr7b                113765287 61 + 115148730 CCTTTGCTATTCACCAACCCTTTCCTAAACCACCCCTTTCCTACACCACCCCTTTCCTATT
i nomLeu3.chr7b                T 352 I 18
s chlSab2.chr7                 135325305 59 + 135778131 CCTTTCCTA--CACCATCCCTTTCCTACACCATCCCTTTCCTACACCATCCCTTTCCTACA
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966683 35 + 189454096 I
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38747 98 -     69473 T

a score=7942.000000
s hg38.chr4_KI270925v1_alt        203693 35 +    555799 CCA-CCCTTTCCTACACCAACCCTTTCCTACACCAC
s nomLeu3.chr7b                113765366 36 + 115148730 CCACCCCTTTCCTACACCAACCCTTTCCTACTACAC
i nomLeu3.chr7b                I 18 C 0
s chlSab2.chr7                 135325364 35 + 135778131 CCA-CCCTTTCCTACACCACCCCTTTCCTACACCAC
i chlSab2.chr7                 C 0 I 10527
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966683 35 + 189454096 I
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38747 98 -     69473 T

a score=391.000000
s hg38.chr4_KI270925v1_alt        203728 4 +    555799 CACC
s nomLeu3.chr7b                113765402 4 + 115148730 CACC
i nomLeu3.chr7b                C 0 I 243
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325399 10527 + 135778131 I
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966683 35 + 189454096 I
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38747 98 -     69473 T

a score=3642.000000
s hg38.chr4_KI270925v1_alt        203732 43 +    555799 CTTTCCTACACCACCCTTTCCTACACCACCCCTTTCCTACACC
s nomLeu3.chr7b                113765649 43 + 115148730 CTTTCCTACACTACGCTTTCCTGCACCACCCCTTTCCTACACC
i nomLeu3.chr7b                I 243 T 439
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325399 10527 + 135778131 I
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966683 35 + 189454096 I
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38747 98 -     69473 T

a score=9703.000000
s hg38.chr4_KI270925v1_alt        203775 160 +    555799 ACCCTTTCCTACACCACCCCTTTCCTACACCAACCCTTTCCCTTTCCTACACCACCCCTTTCCTACACCAACCCTTTCCTACACCACCCCTTTCCTACACCACCCCTTTCCTA--CACCAACCCTTCCCTACACCACCCCTTTCCTACACCAACCCTTTC---CT
s nomLeu3.chr7b                113765253 145 + 115148730 ACCCTTTCCTACACCAAACCTTTCCTACACCAACCCTTTGCTATT--------------------CACCAACCCTTTCCTAAACCACCCCTTTCCTACACCACCCCTTTCCTATTCAACACCCCTTTCCTACACCACCCCTTTCCTACACCAACCCTTTCCTACT
i nomLeu3.chr7b                T 439 I 294
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071   0 -  59632846 C
e calJac3.chr3                 190440882   0 - 190850796 C
e chlSab2.chr7                 135325399 10527 + 135778131 I
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966683  35 + 189454096 I
e rheMac3.chr5                 183582946   0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38747  98 -     69473 T

a score=91.000000
s hg38.chr4_KI270925v1_alt        203935 1 +    555799 A
s nomLeu3.chr7b                113765692 1 + 115148730 A
i nomLeu3.chr7b                I 294 T 294
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325399 10527 + 135778131 I
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966683 35 + 189454096 I
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38747 98 -     69473 T

a score=3506.000000
s hg38.chr4_KI270925v1_alt        203936 45 +    555799 CACCACC-CTTTCCTACACCACCCTTTCCTACACCACCCCTTTCCT
s nomLeu3.chr7b                113765399 46 + 115148730 CACCACCACTTTTCTACACTACCCTTTCCTGCACCACCCCTTTCCT
i nomLeu3.chr7b                T 294 I 259
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325399 10527 + 135778131 I
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966683 35 + 189454096 I
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38747 98 -     69473 T

a score=0.000000
s hg38.chr4_KI270925v1_alt        203981 45 +    555799 ACACCAACCCTTCCCTACACCACCCCTTTCCTCCACCACCCTTTC
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325399 10527 + 135778131 I
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966683 35 + 189454096 I
e rheMac3.chr5                 183582946  0 + 184069350 C
e nomLeu3.chr7b                113765445 259 + 115148730 I
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38747 98 -     69473 T

a score=4145.000000
s hg38.chr4_KI270925v1_alt        204026 71 +    555799 CTACACCACCCTTTCCTACACCACCCCTTTCCTACACCAACCCTTTCCTA--CACCAACCCTTTCCTACACCA
s nomLeu3.chr7b                113765704 69 + 115148730 CTACAACACCCATTCCTACACCA-CCCTTTCCTACACCAAGCCTTTCCTATTCACCAAGCCTTTCCTACA---
i nomLeu3.chr7b                I 259 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325399 10527 + 135778131 I
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966683 35 + 189454096 I
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38747 98 -     69473 T

a score=-241.000000
s hg38.chr4_KI270925v1_alt        204097 14 +    555799 CCCTTTCCTACCCC
s panTro4.chr4_GL389869_random     38649 14 -     69473 ccctttcctacacc
i panTro4.chr4_GL389869_random T 98 C 0
s nomLeu3.chr7b                113765773  2 + 115148730 ---------GC---
i nomLeu3.chr7b                C 0 T 647
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325399 10527 + 135778131 I
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966683 35 + 189454096 I
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=1173.000000
s hg38.chr4_KI270925v1_alt        204111 4 +    555799 ACCC
s panTro4.chr4_GL389869_random     38663 4 -     69473 accc
i panTro4.chr4_GL389869_random C 0 C 0
s nomLeu3.chr7b                113765128 4 + 115148730 ACCC
i nomLeu3.chr7b                T 647 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325399 10527 + 135778131 I
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966683 35 + 189454096 I
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=10494.000000
s hg38.chr4_KI270925v1_alt        204115 19 +    555799 TTTCCTACACCACCCCTTT
s panTro4.chr4_GL389869_random     38667 19 -     69473 tttcctacaccaccccttt
i panTro4.chr4_GL389869_random C 0 T 396
s nomLeu3.chr7b                113765132 19 + 115148730 TTTCCTACACCACCCCTTC
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966718 19 + 189454096 TTTCCTACACCACCCCTTT
i macFas5.chr5                 I 35 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325399 10527 + 135778131 I
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T

a score=3492.000000
s hg38.chr4_KI270925v1_alt        204134 12 +    555799 CCTACACCACCC
s nomLeu3.chr7b                113765151 12 + 115148730 CCTACACCACCC
i nomLeu3.chr7b                C 0 I 15
s macFas5.chr5                 188966737 12 + 189454096 CCTACACCACCC
i macFas5.chr5                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325399 10527 + 135778131 I
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=5641.000000
s hg38.chr4_KI270925v1_alt        204146 29 +    555799 TTTCCTACACCCCCCCTTTCCTACACCAA
s nomLeu3.chr7b                113765178 29 + 115148730 TTTCCGACACTACCGCTTTCCTACACGAA
i nomLeu3.chr7b                I 15 C 0
s macFas5.chr5                 188966749 29 + 189454096 TTTCCTACACCACCCCTTTCTTACACCAC
i macFas5.chr5                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325399 10527 + 135778131 I
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=100.000000
s hg38.chr4_KI270925v1_alt        204175 1 +    555799 C
s macFas5.chr5                 188966778 1 + 189454096 C
i macFas5.chr5                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325399 10527 + 135778131 I
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e nomLeu3.chr7b                113765207 0 + 115148730 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=4521.000000
s hg38.chr4_KI270925v1_alt        204176 18 +    555799 CCTTTCCTACACCACCCC
s nomLeu3.chr7b                113765207 18 + 115148730 CCTTTCCTACACCAACCC
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966779 18 + 189454096 CCTTTCCTACATCACCCC
i macFas5.chr5                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325399 10527 + 135778131 I
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=-17.000000
s hg38.chr4_KI270925v1_alt        204194 8 +    555799 TTTCCTAC
s nomLeu3.chr7b                113765225 5 + 115148730 TTTC---C
i nomLeu3.chr7b                C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325399 10527 + 135778131 I
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966797 0 + 189454096 C
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=2155.000000
s hg38.chr4_KI270925v1_alt        204202 9 +    555799 TACACCAAC
s nomLeu3.chr7b                113765230 9 + 115148730 TACACCACC
i nomLeu3.chr7b                C 0 T 32
s chlSab2.chr7                 135335926 9 + 135778131 TACACCAAC
i chlSab2.chr7                 I 10527 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966797 0 + 189454096 C
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=8514.000000
s hg38.chr4_KI270925v1_alt        204211 32 +    555799 CCTTTCCTACACCAACCCTTTCCTACACCAAC
s nomLeu3.chr7b                113765207 32 + 115148730 CCTTTCCTACACCAACCCTTTCCTACACCACC
i nomLeu3.chr7b                T 32 I 4
s chlSab2.chr7                 135335935 32 + 135778131 CCTTTCCCACACCAACCCTTTCCTACACCAAC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966797  0 + 189454096 C
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=382.000000
s hg38.chr4_KI270925v1_alt        204243 4 +    555799 CCTT
s chlSab2.chr7                 135335967 4 + 135778131 CCTT
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966797 0 + 189454096 C
e rheMac3.chr5                 183582946 0 + 184069350 C
e nomLeu3.chr7b                113765239 4 + 115148730 I
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=3252.000000
s hg38.chr4_KI270925v1_alt        204247 46 +    555799 TCCTACACCAACCCCTTTCATACACCACCCCTTTCATACACCACCC
s nomLeu3.chr7b                113765243 14 + 115148730 TCCTACAGCA--------------------------------ACCC
i nomLeu3.chr7b                I 4 C 0
s chlSab2.chr7                 135335971 46 + 135778131 TCCTACACCAACCCCTTTTCTACACCACCCCTTTCCTACATCACCC
i chlSab2.chr7                 C 0 T 10713
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966797  0 + 189454096 C
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=4087.000000
s hg38.chr4_KI270925v1_alt        204293 59 +    555799 TTTCCTACACCAACCCTTTCCTACACCAACCCTTTCCTA--CACC-ACCCTTTCCTACACCA
s nomLeu3.chr7b                113765257 62 + 115148730 TTTCCTACACCAAACCTTTCCTACACCAACCCTTTGCTATTCACCAACCCTTTCCTAAACCA
i nomLeu3.chr7b                C 0 T 221
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135336017 10713 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966797  0 + 189454096 C
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=169.000000
s hg38.chr4_KI270925v1_alt        204352 3 +    555799 CCC
s nomLeu3.chr7b                113765098 3 + 115148730 CCT
i nomLeu3.chr7b                T 221 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135336017 10713 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966797 0 + 189454096 C
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=11274.000000
s hg38.chr4_KI270925v1_alt        204355 42 +    555799 TTTCCTACACCACCCCTTTCCTACACCACCCTTTCCTACACC
s nomLeu3.chr7b                113765101 42 + 115148730 TTTCCTACATCACCCCTTTCCTACACCACCCTTTCCTACACC
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966797 42 + 189454096 TTTTCTATACCACCCCTTTCCTACACCACCCTTTCCTACACC
i macFas5.chr5                 C 0 T 79
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135336017 10713 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=5360.000000
s hg38.chr4_KI270925v1_alt        204397 26 +    555799 ACCCCTTTCCTACACCACCCTTTCCT-
s nomLeu3.chr7b                113765143 26 + 115148730 ACCCCTTCCCTACACCACCCTTTCCT-
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966760 27 + 189454096 ACCCCTTTCTTACACCACCCCTTTCCT
i macFas5.chr5                 T 79 I 52
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135336017 10713 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=-113.000000
s hg38.chr4_KI270925v1_alt        204423 6 +    555799 ACACCA--
s nomLeu3.chr7b                113765169 6 + 115148730 ACACCA--
i nomLeu3.chr7b                C 0 I 291
s macFas5.chr5                 188966839 6 + 189454096 --ACCCTT
i macFas5.chr5                 I 52 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135336017 10713 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=1927.000000
s hg38.chr4_KI270925v1_alt        204429 16 +    555799 CCCCTTTCCTACACCA------
s nomLeu3.chr7b                113765466 16 + 115148730 CCCCTTTCCTACACCA------
i nomLeu3.chr7b                I 291 I 1
s macFas5.chr5                 188966845 16 + 189454096 ------TCCTACACCAACCCTT
i macFas5.chr5                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135336017 10713 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=3675.000000
s hg38.chr4_KI270925v1_alt        204445 11 +    555799 CCCTTCCCTAC
s nomLeu3.chr7b                113765483 11 + 115148730 CCCTTTCCTAT
i nomLeu3.chr7b                I 1 C 0
s macFas5.chr5                 188966861  6 + 189454096 -----TCCTAC
i macFas5.chr5                 C 0 I 25
s chlSab2.chr7                 135325304 11 + 135778131 CCCTTTCCTAC
i chlSab2.chr7                 T 10713 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=8844.000000
s hg38.chr4_KI270925v1_alt        204456 36 +    555799 ACCACCCCTTCCCTACACCACCCCTTTCCTACACCA
s nomLeu3.chr7b                113765494 36 + 115148730 ACCACCCCTTTCCTACAGCAACCCTTTCCTACACCA
i nomLeu3.chr7b                C 0 I 2
s chlSab2.chr7                 135325315 36 + 135778131 ACCATCCCTTTCCTACACCATCCCTTTCCTACACCA
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966867 25 + 189454096 I
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=69.000000
s hg38.chr4_KI270925v1_alt        204492 2 +    555799 CC
s chlSab2.chr7                 135325351 2 + 135778131 TC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966867 25 + 189454096 I
e rheMac3.chr5                 183582946 0 + 184069350 C
e nomLeu3.chr7b                113765530 2 + 115148730 I
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=3505.000000
s hg38.chr4_KI270925v1_alt        204494 14 +    555799 CCTTCCCTACACCA
s nomLeu3.chr7b                113765532 14 + 115148730 CCTTTCCTACACTA
i nomLeu3.chr7b                I 2 T 277
s chlSab2.chr7                 135325353 14 + 135778131 CCTTTCCTACACCA
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966867 25 + 189454096 I
e rheMac3.chr5                 183582946  0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=-2.000000
s hg38.chr4_KI270925v1_alt        204508 5 +    555799 C-CCTT
s nomLeu3.chr7b                113765269 6 + 115148730 AACCTT
i nomLeu3.chr7b                T 277 C 0
s chlSab2.chr7                 135325367 5 + 135778131 -CCCTT
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966867 25 + 189454096 I
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=546.000000
s hg38.chr4_KI270925v1_alt        204513 1 +    555799 T
s nomLeu3.chr7b                113765275 1 + 115148730 T
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966892 1 + 189454096 T
i macFas5.chr5                 I 25 C 0
s chlSab2.chr7                 135325372 1 + 135778131 T
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e ponAbe2.chr4_random            3863354 1278 -  23176937 T
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=30926.000000
s hg38.chr4_KI270925v1_alt        204514 40 +    555799 CCTACACCACCCCTTTCCTA--CACCAACCCTTCCCTACACC
s ponAbe2.chr4_random            3862076 40 -  23176937 cctacaccaaccctttccta--caccacccctttcctacacc
i ponAbe2.chr4_random          T 1278 C 0
s nomLeu3.chr7b                113765276 42 + 115148730 CCTACACCAACCCTTTGCTATTCACCAACCCTTTCCTAAACC
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966893 40 + 189454096 CCTACACCACCCCTTTCCTA--CACCAACCCTTTCCTACACC
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135325373 40 + 135778131 CCTACACCACCCCTTTCCTA--CACCACCCCTATCCTACACC
i chlSab2.chr7                 C 0 I 1
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=13589.000000
s hg38.chr4_KI270925v1_alt        204554 16 +    555799 ACCCCTTTCCTACACC
s ponAbe2.chr4_random            3862116 16 -  23176937 aaccctttcctacacc
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765318 16 + 115148730 ACCCCTTTCCTACACC
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966933 16 + 189454096 AACCCTTTCCTACACC
i macFas5.chr5                 C 0 I 135
s chlSab2.chr7                 135325414 16 + 135778131 ACCCCTCTCCTACACC
i chlSab2.chr7                 I 1 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=25678.000000
s hg38.chr4_KI270925v1_alt        204570 59 +    555799 AACCCTTTCCTA--CACCACCCCTTTCCTACACCAACCCTTTCCTACACCACCCCTTTCCT
s ponAbe2.chr4_random            3862132 57 -  23176937 acccctttccta--caccacctctttcctacaccaaacctttcctacaccacctcttt--t
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765334 61 + 115148730 ACCCCTTTCCTATTCAACACCCCTTTCCTACACCACCCCTTTCCTACACCAACCCTTTCCT
i nomLeu3.chr7b                C 0 C 0
s chlSab2.chr7                 135325430 59 + 135778131 ATCCCTTTCCTA--CACCACCCCTTTCTTACACCAACCCTTTCCTACACCATCCCTTTCCT
i chlSab2.chr7                 C 0 I 10618
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966949 135 + 189454096 I
e rheMac3.chr5                 183582946  0 + 184069350 C
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=513.000000
s hg38.chr4_KI270925v1_alt        204629 2 +    555799 -CT
s ponAbe2.chr4_random            3862189 2 -  23176937 -ct
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765395 3 + 115148730 ACT
i nomLeu3.chr7b                C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325489 10618 + 135778131 I
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966949 135 + 189454096 I
e rheMac3.chr5                 183582946 0 + 184069350 C
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=3369.000000
s hg38.chr4_KI270925v1_alt        204631 7 +    555799 ACACCAA
s ponAbe2.chr4_random            3862191 7 -  23176937 acaccaa
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765398 7 + 115148730 ACACCAC
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188967084 7 + 189454096 ACACCAA
i macFas5.chr5                 I 135 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325489 10618 + 135778131 I
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=10382.000000
s hg38.chr4_KI270925v1_alt        204638 15 +    555799 CCCTTTCCTACACCA
s ponAbe2.chr4_random            3862198 15 -  23176937 ccctttcctacacca
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765405 15 + 115148730 CACTTTTCTACACTA
i nomLeu3.chr7b                C 0 T 245
s macFas5.chr5                 188967091 15 + 189454096 CCCTTTCCTACACCA
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135336107 14 + 135778131 CCCTTTCCTACACC-
i chlSab2.chr7                 I 10618 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=-69.000000
s hg38.chr4_KI270925v1_alt        204653 1 +    555799 A
s ponAbe2.chr4_random            3862213 1 -  23176937 c
i ponAbe2.chr4_random          C 0 C 0
s macFas5.chr5                 188967106 1 + 189454096 A
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135336121 1 + 135778131 A
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946 0 + 184069350 C
e nomLeu3.chr7b                113765420 245 + 115148730 T
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=21350.000000
s hg38.chr4_KI270925v1_alt        204654 29 +    555799 CCCTTTCCTACACCACCC-TTTCCTACACC
s ponAbe2.chr4_random            3862214 30 -  23176937 ccctttcctacaccacccctttcctacaac
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765175 30 + 115148730 CCCTTTCCGACACTACCGCTTTCCTACACG
i nomLeu3.chr7b                T 245 C 0
s macFas5.chr5                 188967107 29 + 189454096 CCCTTTCCTACACCACCC-TTTCCTACACC
i macFas5.chr5                 C 0 T 391
s chlSab2.chr7                 135336122 29 + 135778131 CCCTTTCCTACACCACCC-TTTCCTACACC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=43338.000000
s hg38.chr4_KI270925v1_alt        204683 58 +    555799 ACCCTTTCCTACACCAACCCTTTCCTACACC-AACCCTTTCCTACACCAACCCTTTCCT
s ponAbe2.chr4_random            3862244 58 -  23176937 accctttcctaCAACACCCCTTTCCTACAAC-ACCCCTTTCCTACACGACCCCTTTCCT
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765205 58 + 115148730 AACCTTTCCTACACCAACCCTTTCCTACACC-ACCCCTTTCCTACAGCAACCCTTTCCT
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966745 58 + 189454096 ACCCTTTCCTACACCACCCCTTTCTTACACC-ACCCCTTTCCTACATCACCCCTTTTCT
i macFas5.chr5                 T 391 I 1
s chlSab2.chr7                 135336151 59 + 135778131 ACCCTTTCCTACACCAACCCTTTCCTACACCAACCCCTTTTCTACACCACCCCTGTCCT
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=546.000000
s hg38.chr4_KI270925v1_alt        204741 1 +    555799 A
s ponAbe2.chr4_random            3862302 1 -  23176937 A
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765263 1 + 115148730 A
i nomLeu3.chr7b                C 0 C 0
s chlSab2.chr7                 135336210 1 + 135778131 A
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966803 1 + 189454096 I
e rheMac3.chr5                 183582946 0 + 184069350 C
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=14090.000000
s hg38.chr4_KI270925v1_alt        204742 20 +    555799 CACCACCCCTTTCCTACACC
s ponAbe2.chr4_random            3862303 20 -  23176937 CACCACCCCTTTCCTACACC
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765264 20 + 115148730 CACCAAACCTTTCCTACACC
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966804 20 + 189454096 TACCACCCCTTTCCTACACC
i macFas5.chr5                 I 1 I 93
s chlSab2.chr7                 135336211 19 + 135778131 CACCA-CTCTTTTCTACACC
i chlSab2.chr7                 C 0 T 10925
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=14409.000000
s hg38.chr4_KI270925v1_alt        204762 32 +    555799 AACCCTTTCCTA--CACCAACCCTTTCCTACACC
s ponAbe2.chr4_random            3862323 32 -  23176937 ACccctttccta--caccaaccctttcctacccc
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765284 34 + 115148730 AACCCTTTGCTATTCACCAACCCTTTCCTAAACC
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966917 32 + 189454096 AACCCTTTCCTA--CACCAACCCTTTCCTACACC
i macFas5.chr5                 I 93 T 125
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135336230 10925 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=6768.000000
s hg38.chr4_KI270925v1_alt        204794 30 +    555799 ACCCCTTTCTTACACCACCCCTTTCCTA--CA
s ponAbe2.chr4_random            3862355 30 -  23176937 acccctttcctacaccaaccctctccta--ca
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765318 32 + 115148730 ACCCCTTTCCTACACCACCCCTTTCCTATTCA
i nomLeu3.chr7b                C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135336230 10925 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966949 125 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=-1115.000000
s hg38.chr4_KI270925v1_alt        204824 14 +    555799 CCTTCCCTACACCA
s ponAbe2.chr4_random            3862385  3 -  23176937 ac-----------a
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765350  3 + 115148730 AC-----------A
i nomLeu3.chr7b                C 0 C 0
s chlSab2.chr7                 135325305 14 + 135778131 CCTTTCCTACACCA
i chlSab2.chr7                 T 10925 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966949 125 + 189454096 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=36440.000000
s hg38.chr4_KI270925v1_alt        204838 57 +    555799 ACCCTTTCCTACACCAACCCTTCCCTACACCAACCCTTTCCTACACCACCC-TTTCCT
s ponAbe2.chr4_random            3862388 57 -  23176937 accctttcctacaaca-ccctttcctacaccacccctttcctacaccacccctttcct
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765353 45 + 115148730 CCCCTTTCCTACACCACCCCTTTCCTACACCAACCCTTTCCTA-------------CT
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966824 56 + 189454096 ACCCTTTCCTACACCA-CCCTTTCCTACACCAACCCTTTCCTACACCACCC-TTTCCT
i macFas5.chr5                 T 125 I 256
s chlSab2.chr7                 135325319 57 + 135778131 TCCCTTTCCTACACCATCCCTTTCCTACACCATCCCTTTCCTACACCACCC-TTTCCT
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=10552.000000
s hg38.chr4_KI270925v1_alt        204895 15 +    555799 ACACCACCCCTTTCC
s ponAbe2.chr4_random            3862445 15 -  23176937 acaccacccctttcc
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765398 15 + 115148730 ACACCACCACTTTTC
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188967136 10 + 189454096 -----ACCCCTTTCC
i macFas5.chr5                 I 256 T 251
s chlSab2.chr7                 135325376 15 + 135778131 ACACCACCCCTTTCC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=16588.000000
s hg38.chr4_KI270925v1_alt        204910 22 +    555799 TACACCACCCCTTTCCTACACC
s ponAbe2.chr4_random            3862460 22 -  23176937 tacaccacccctttcctacact
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765413 21 + 115148730 TACACTA-CCCTTTCCTGCACC
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966895 22 + 189454096 TACACCACCCCTTTCCTACACC
i macFas5.chr5                 T 251 C 0
s chlSab2.chr7                 135325391 22 + 135778131 TACACCACCCCTATCCTACACC
i chlSab2.chr7                 C 0 I 1
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=24499.000000
s hg38.chr4_KI270925v1_alt        204932 33 +    555799 ACCCCTTTCATACACCACCCCTTTCCTACACCA
s ponAbe2.chr4_random            3862482 33 -  23176937 aaccctttcctacaccaaccctttcctacaaca
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765434 32 + 115148730 ACCCCTTTCCTACACCA-CCCTTTCCTACACTA
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966917 33 + 189454096 AACCCTTTCCTACACCAACCCTTTCCTACACCA
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135325414 33 + 135778131 ACCCCTCTCCTACACCATCCCTTTCCTACACCA
i chlSab2.chr7                 I 1 T 32
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=37086.000000
s hg38.chr4_KI270925v1_alt        204965 49 +    555799 CCCCTTTCCTACACCAACCCTTTCCTACACCAACCCTTTCCTACACCAA
s ponAbe2.chr4_random            3862515 49 -  23176937 tccctttcctacaacactcctttcctacaccacccctttcctacaccaa
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765466 49 + 115148730 CCCCTTTCCTACACCAGCCCTTTCCTATACCACCCCTTTCCTACAGCAA
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188966950 47 + 189454096 -CCCTTTCCTACACCA-CCCTTTCCTATACCACCCCTTTCCTACACCAC
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135325415 49 + 135778131 CCCCTCTCCTACACCATCCCTTTCCTACACCACCCCTTTCTTACACCAA
i chlSab2.chr7                 T 32 T 160
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=50639.000000
s hg38.chr4_KI270925v1_alt        205014 62 +    555799 CCCTTTCCTACACCAACCCTTTCCTACACCACCCCTTTCATACACCACCCCTTTCCTACACC
s ponAbe2.chr4_random            3862564 62 -  23176937 ccctttcctacaccacccctttcctacaccacccctttcctacaccacccctttcctacacc
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765515 61 + 115148730 CCCTTTCCTACACCAAACCTTTCCTACACTACCCCTTTCCTACACCA-CTCTTTCCTACACC
i nomLeu3.chr7b                C 0 T 157
s macFas5.chr5                 188966997 61 + 189454096 CCCTTTCCTACACCA-CCCTTTCCTACACCACCCCTTTCCTACACCACCCCTTTCCTACACC
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135325304 62 + 135778131 CCCTTTCCTACACCATCCCTTTCCTACACCATCCCTTTCCTACACCATCCCTTTCCTACACC
i chlSab2.chr7                 T 160 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=28869.000000
s hg38.chr4_KI270925v1_alt        205076 32 +    555799 ACCCTTTCCTACACCAACCCTTTCCTACACCA
s ponAbe2.chr4_random            3862626 32 -  23176937 accctttcctacaccaaccctttcctacacca
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765419 32 + 115148730 ACCCTTTCCTGCACCACCCCTTTCCTACACCA
i nomLeu3.chr7b                T 157 C 0
s macFas5.chr5                 188967058 32 + 189454096 ACCCTTTCCTACACCACCCCTTTCCTACACCA
i macFas5.chr5                 C 0 T 372
s chlSab2.chr7                 135325366 32 + 135778131 ACCCTTTCCTACACCACCCCTTTCCTACACCA
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e rheMac3.chr5                 183582946  0 + 184069350 C
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=1886.000000
s hg38.chr4_KI270925v1_alt        205108 5 +    555799 CCCTT
s ponAbe2.chr4_random            3862658 3 -  23176937 ccc--
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765451 5 + 115148730 CCCTT
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183582946 5 + 184069350 ccctt
i rheMac3.chr5                 C 0 C 0
s chlSab2.chr7                 135325398 5 + 135778131 CCCCT
i chlSab2.chr7                 C 0 T 99
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967090 372 + 189454096 T
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=1582.000000
s hg38.chr4_KI270925v1_alt        205113 7 +    555799 TCCTACA
s nomLeu3.chr7b                113765456 7 + 115148730 TCCTACA
i nomLeu3.chr7b                C 0 T 366
s rheMac3.chr5                 183582951 7 + 184069350 tcctcca
i rheMac3.chr5                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325403 99 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967090 372 + 189454096 T
e ponAbe2.chr4_random            3862661 0 -  23176937 C
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=200.000000
s hg38.chr4_KI270925v1_alt        205120 2 +    555799 CC
s rheMac3.chr5                 183582958 2 + 184069350 cc
i rheMac3.chr5                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325403 99 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967090 372 + 189454096 T
e nomLeu3.chr7b                113765463 366 + 115148730 T
e ponAbe2.chr4_random            3862661 0 -  23176937 C
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=810.000000
s hg38.chr4_KI270925v1_alt        205122 4 +    555799 ACCC
s ponAbe2.chr4_random            3862661 1 -  23176937 ---c
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765097 4 + 115148730 ACCT
i nomLeu3.chr7b                T 366 C 0
s rheMac3.chr5                 183582960 4 + 184069350 accc
i rheMac3.chr5                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325403 99 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188967090 372 + 189454096 T
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=45723.000000
s hg38.chr4_KI270925v1_alt        205126 60 +    555799 TTTCCTACACCACCCCTTTCCTACACCA-CCCTTTCCTACACCACCCCTTTCCTACACCAA-
s ponAbe2.chr4_random            3862662 60 -  23176937 tttcctacaccaaccctttcctacaccaaccctttcctataccacccctttcctacacca--
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765101 59 + 115148730 TTTCCTACATCACCCCTTTCCTACACCA-CCCTTTCCTACACCACCCCTTCCCTACACCA--
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183582964 59 + 184069350 tttcctacaccaaccctttcctacacca-ccccatcctacaccaccgctttcctacacca--
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188966718 60 + 189454096 TTTCCTACACCACCCCTTTCCTACACCA-CCCTTTCCTACACCACCCCTTTCTTACACCA-C
i macFas5.chr5                 T 372 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325403 99 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=50809.000000
s hg38.chr4_KI270925v1_alt        205186 48 +    555799 CCCTTTCCTACACCACCCCTTTCCTACACCACCCCTTTCCTACACCAA
s ponAbe2.chr4_random            3862722 48 -  23176937 ccctttcctacaccacccctttcctacaccacccctttcctacaccac
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765160 47 + 115148730 CCCTTTCCTACACCA-CCCTTTCCGACACTACCGCTTTCCTACACGAA
i nomLeu3.chr7b                C 0 T 624
s rheMac3.chr5                 183583023 47 + 184069350 ccctttcctacaccaaccctttcctacaccacccc-atcctacaccac
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188966778 47 + 189454096 CCCTTTCCTACATCACCCCTTTTCTATACCACCCCTTTCCTACACCA-
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135325304 48 + 135778131 CCCTTTCCTACACCATCCCTTTCCTACACCATCCCTTTCCTACACCAT
i chlSab2.chr7                 T 99 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=9062.000000
s hg38.chr4_KI270925v1_alt        205234 10 +    555799 CCCTTCCCTA
s ponAbe2.chr4_random            3862770 10 -  23176937 ccctttccta
i ponAbe2.chr4_random          C 0 C 0
s rheMac3.chr5                 183583070 10 + 184069350 ccctttccta
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188966825 10 + 189454096 CCCTTTCCTA
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135325352 10 + 135778131 CCCTTTCCTA
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e nomLeu3.chr7b                113765207 624 + 115148730 T
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=44764.000000
s hg38.chr4_KI270925v1_alt        205244 36 +    555799 CACCACCCTTTCCTACACCACCCCTTTCCTACACCA
s ponAbe2.chr4_random            3862780 35 -  23176937 caccaccctttcctacaccaccc-tttcctacacca
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113764583 36 + 115148730 TACCCCCCTTTCCTACACCACCCCTTTCCTACACCA
i nomLeu3.chr7b                T 624 I 1156
s rheMac3.chr5                 183583080 36 + 184069350 caccaccctttcctacaccaaccctttcctccacca
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188966835 36 + 189454096 CACCACCCTTTCCTACACCAACCCTTTCCTACACCA
i macFas5.chr5                 C 0 I 282
s chlSab2.chr7                 135325362 36 + 135778131 CACCACCCTTTCCTACACCACCCCTTTCCTACACCA
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=11564.000000
s hg38.chr4_KI270925v1_alt        205280 15 +    555799 ACCCTTCCCTACACC
s ponAbe2.chr4_random            3862815 14 -  23176937 -ccctttcctacacc
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765775 15 + 115148730 ACCCTTCCCTACACC
i nomLeu3.chr7b                I 1156 C 0
s rheMac3.chr5                 183583116 14 + 184069350 -ccctttcctacacc
i rheMac3.chr5                 C 0 I 1
s chlSab2.chr7                 135325398 15 + 135778131 CCCCTATCCTACACC
i chlSab2.chr7                 C 0 I 1
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966871 282 + 189454096 I
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=-210.000000
s hg38.chr4_KI270925v1_alt        205295 2 +    555799 AC
s ponAbe2.chr4_random            3862829 2 -  23176937 ac
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765790 2 + 115148730 AC
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183583131 1 + 184069350 a-
i rheMac3.chr5                 I 1 C 0
s chlSab2.chr7                 135325414 2 + 135778131 AC
i chlSab2.chr7                 I 1 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e macFas5.chr5                 188966871 282 + 189454096 I
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=41820.000000
s hg38.chr4_KI270925v1_alt        205297 38 +    555799 CCCTTTCCTACACCAACCCTTTCCTACACCACCCCTTT
s ponAbe2.chr4_random            3862831 38 -  23176937 cccttttctacaccatccctttcctacaccatcccttt
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765792 38 + 115148730 CCATTTCCTACACCAACACTTTGCTACAACACCCATTT
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183583132 37 + 184069350 ccctttcctacacca-ccctttcctataccaccccttt
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188967153 38 + 189454096 CCCTTTCCTATACCACCCCTTTCCTACACCACCCCTTT
i macFas5.chr5                 I 282 C 0
s chlSab2.chr7                 135325416 38 + 135778131 CCCTCTCCTACACCATCCCTTTCCTACACCACCCCTTT
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T
e panTro4.chr4_GL389869_random     38686 396 -     69473 T

a score=40661.000000
s hg38.chr4_KI270925v1_alt        205335 26 +    555799 CCTACACCAACCCTTTCCTACACCAA
s panTro4.chr4_GL389869_random     38290 26 -     69473 cctacaccaaccccttcgtacaccaa
i panTro4.chr4_GL389869_random T 396 C 0
s ponAbe2.chr4_random            3862869 26 -  23176937 cctacaccacccctttcctacaccac
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765830 26 + 115148730 CCTACACCACCCCTTTCCTACACCAA
i nomLeu3.chr7b                C 0 T 618
s rheMac3.chr5                 183583169 25 + 184069350 cctccacc-accctttcctacaccaa
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188967191 26 + 189454096 CCTACACCAACCCTTTCCTACACCAA
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135325454 26 + 135778131 CTTACACCAACCCTTTCCTACACCAT
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T

a score=26113.000000
s hg38.chr4_KI270925v1_alt        205361 15 +    555799 CCCTTTCCTACACCA
s panTro4.chr4_GL389869_random     38316 15 -     69473 atctttcctacatca
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3862895 15 -  23176937 ccctttcctacacca
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765238 15 + 115148730 CCCTTTCCTACAGCA
i nomLeu3.chr7b                T 618 C 0
s rheMac3.chr5                 183583194 15 + 184069350 ccctttcctacacca
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188967217 15 + 189454096 CCCTTTCCTACACCA
i macFas5.chr5                 C 0 T 298
s chlSab2.chr7                 135325480 15 + 135778131 CCCTTTCCTACACCA
i chlSab2.chr7                 C 0 T 191
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T

a score=91420.000000
s hg38.chr4_KI270925v1_alt        205376  97 +    555799 ACCCTTTCCTACACCAACCCTTTCCTACACCAACCCTTTCCTA--CACCAACCCTTTCCTACACCAACCCTTCCCTACACCACCCCTTTCCTA--CACCAA
s panTro4.chr4_GL389869_random     38331  97 -     69473 accttttcctacaccacccCTTTCCTACAACACCTCTTTCCTA--CACCAAACCTTTCCTAAACCAAGCCTTTCCTACACCAAGCCTTTCCTA--CACCAA
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3862910  95 -  23176937 ccccttttctacacca-ccctttcctacaccacccctttccta--cacc-accctttcctacaccatccctttcctacaccaaccctttccta--caccac
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765253 101 + 115148730 ACCCTTTCCTACACCAAACCTTTCCTACACCAACCCTTTGCTATTCACCAACCCTTTCCTAAACCACCCCTTTCCTACACCACCCCTTTCCTATTCAACAC
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183583209  93 + 184069350 -ccctttcctataccacccctttcctccacca-ccctttccta--caccaaccctttcctacacca-ccctttcctataccacccctttcctc--cacca-
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188966934  94 + 189454096 ACCCTTTCCTACACCA-CCCTTTCCTACACCA-CCCTTTCCTA--TACCACCCCTTTCCTACACCACCCCTTTCCTACACCA-CCCTTTCCTA--CACCAC
i macFas5.chr5                 T 298 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071   0 -  59632846 C
e calJac3.chr3                 190440882   0 - 190850796 C
e chlSab2.chr7                 135325495 191 + 135778131 T
e papAnu2.chr5                 178390541 485 + 178775436 T

a score=9963.000000
s hg38.chr4_KI270925v1_alt        205473 6 +    555799 CCCTTT
s panTro4.chr4_GL389869_random     38428 6 -     69473 ACTTTT
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3863005 6 -  23176937 cccttt
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765354 6 + 115148730 CCCTTT
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183583302 6 + 184069350 cccttt
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188967028 6 + 189454096 CCCTTT
i macFas5.chr5                 C 0 C 0
s chlSab2.chr7                 135325304 6 + 135778131 CCCTTT
i chlSab2.chr7                 T 191 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e papAnu2.chr5                 178390541 485 + 178775436 T

a score=84014.000000
s hg38.chr4_KI270925v1_alt        205479 40 +    555799 CCTACACCACCCCTTTCCTACACCAACCCTTCC---CTACACC
s panTro4.chr4_GL389869_random     38434 40 -     69473 CCTATACCACCCCTTCCCTACACCACACCTTTC---CTACACC
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3863011 40 -  23176937 cctacaccacccttttcctacaccaaccctttc---ctacacc
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765360 43 + 115148730 CCTACACCACCCCTTTCCTACACCAACCCTTTCCTACTACACC
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183583308 39 + 184069350 cctacaccaaccctttcctacacc-accctttc---ctatacc
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188967034 39 + 189454096 CCTACACCACCCCTTTCCTACACC-ACCCTTTC---CTACACC
i macFas5.chr5                 C 0 I 159
s papAnu2.chr5                 178390056 40 + 178775436 CTTACACCAACCCTTTCCTACACCAACTCTTTC---CTACACC
i papAnu2.chr5                 T 485 C 0
s chlSab2.chr7                 135325310 40 + 135778131 CCTACACCATCCCTTTCCTACACCATCCCTTTC---CTACACC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C

a score=32242.000000
s hg38.chr4_KI270925v1_alt        205519 16 +    555799 ACCCCTTTCCTACACC
s panTro4.chr4_GL389869_random     38474 16 -     69473 AACCCTTGCCTACACC
i panTro4.chr4_GL389869_random C 0 I 196
s ponAbe2.chr4_random            3863051 16 -  23176937 aacccttttctacacc
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765403 16 + 115148730 ACCACTTTTCTACACT
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183583347 16 + 184069350 acccctttcctacacc
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188967232 16 + 189454096 ACCCCTTTCCTACACC
i macFas5.chr5                 I 159 C 0
s papAnu2.chr5                 178390096 16 + 178775436 Aaccctttcgtacacc
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135325350 16 + 135778131 ATCCCTTTCCTACACC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C

a score=1365.000000
s hg38.chr4_KI270925v1_alt        205535 1 +    555799 A
s ponAbe2.chr4_random            3863067 1 -  23176937 a
i ponAbe2.chr4_random          C 0 C 0
s rheMac3.chr5                 183583363 1 + 184069350 a
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188967248 1 + 189454096 A
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178390112 1 + 178775436 a
i papAnu2.chr5                 C 0 I 2
s chlSab2.chr7                 135325366 1 + 135778131 A
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e nomLeu3.chr7b                113765419 0 + 115148730 C
e panTro4.chr4_GL389869_random     38490 196 -     69473 I

a score=44206.000000
s hg38.chr4_KI270925v1_alt        205536 32 +    555799 CCCTTTCCTACACCACCCCTTTCCTACACCAC
s ponAbe2.chr4_random            3863068 32 -  23176937 tcctttccTACGACACCCCTTTCCTACACCAC
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765419 17 + 115148730 ---------------ACCCTTTCCTGCACCAC
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183583364 32 + 184069350 ccctttcctacaccaaccctttcctacaccac
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188967249 32 + 189454096 CCCTTTCCTACACCACCCCTGTCGGACACCAC
i macFas5.chr5                 C 0 T 284
s papAnu2.chr5                 178390115 32 + 178775436 ccctttcctacaccacccctttcctacaccac
i papAnu2.chr5                 I 2 C 0
s chlSab2.chr7                 135325367 32 + 135778131 CCCTTTCCTACACCACCCCTTTCCTACACCAC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e panTro4.chr4_GL389869_random     38490 196 -     69473 I

a score=11430.000000
s hg38.chr4_KI270925v1_alt        205568 15 +    555799 CCCTTTCCTACACCA
s ponAbe2.chr4_random            3863100 15 -  23176937 CCCTTTCCTACACCA
i ponAbe2.chr4_random          C 0 I 1
s nomLeu3.chr7b                113765436 15 + 115148730 CCCTTTCCTACACCA
i nomLeu3.chr7b                C 0 C 0
s papAnu2.chr5                 178390147 14 + 178775436 ccctttcctacacc-
i papAnu2.chr5                 C 0 I 1
s chlSab2.chr7                 135325399 15 + 135778131 CCCTATCCTACACCA
i chlSab2.chr7                 C 0 T 47
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e macFas5.chr5                 188967281 284 + 189454096 T
e rheMac3.chr5                 183583396  0 + 184069350 C
e panTro4.chr4_GL389869_random     38490 196 -     69473 I

a score=34191.000000
s hg38.chr4_KI270925v1_alt        205583 48 +    555799 CCCTTTCCCACACCACCCCTTTCCTACACCA-ACCCTTTCCTACACCAA
s ponAbe2.chr4_random            3863116 47 -  23176937 CCCTTTCTTACACCAACCATTTCCTATACCA--CCCTTTCCTACACCAA
i ponAbe2.chr4_random          I 1 C 0
s nomLeu3.chr7b                113765451 48 + 115148730 CCCTTTCCTACACTACCCCTTTCCTACACCA-GCCCTTTCCTATACCAC
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183583396 30 + 184069350 -cctttcctataccacccctttcctacacca------------------
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188966997 15 + 189454096 ----------------CCCTTTCCTACACCA------------------
i macFas5.chr5                 T 284 C 0
s papAnu2.chr5                 178390162 32 + 178775436 ccctttcctacatcaccccttttctataccac-----------------
i papAnu2.chr5                 I 1 C 0
s chlSab2.chr7                 135325367 48 + 135778131 CCCTTTCCTACACCACCCCTTTCCTACACCA-CCCCTATCCTACACCAA
i chlSab2.chr7                 T 47 T 111
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e panTro4.chr4_GL389869_random     38490 196 -     69473 I

a score=8816.000000
s hg38.chr4_KI270925v1_alt        205631 16 +    555799 CCCTTTCCTA--CACCAC
s ponAbe2.chr4_random            3863163 18 -  23176937 TCCCTTCCTATTCATCAa
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765499 16 + 115148730 CCCTTTCCTA--CAGCAA
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183583426 16 + 184069350 tcatttccta--caccac
i rheMac3.chr5                 C 0 C 0
s papAnu2.chr5                 178390194 16 + 178775436 ccctttccta--caccac
i papAnu2.chr5                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e chlSab2.chr7                 135325415 111 + 135778131 T
e macFas5.chr5                 188967012  0 + 189454096 C
e panTro4.chr4_GL389869_random     38490 196 -     69473 I

a score=59146.000000
s hg38.chr4_KI270925v1_alt        205647 47 +    555799 CCCTTTCCTACACCAACCCTTTCCTACACCAACCCTTTCCTACACCA
s ponAbe2.chr4_random            3863181 46 -  23176937 ccctttcctacagca-cccttccctataccacccctttcctacacca
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765515 47 + 115148730 CCCTTTCCTACACCAAACCTTTCCTACACTACCCCTTTCCTACACCA
i nomLeu3.chr7b                C 0 T 127
s rheMac3.chr5                 183583442 47 + 184069350 cccttgcctacaccacccctatcctacaccacccctttcctatacca
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188967012 31 + 189454096 ----------------CCCTTTCCTACACCACCCCTTTCCTACACCA
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178390210 45 + 178775436 cccat-cctacaccacccctttcctacaccacccc-atcctactcca
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135325304 47 + 135778131 CCCTTTCCTACACCATCCCTTTCCTACACCATCCCTTTCCTACACCA
i chlSab2.chr7                 T 111 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e panTro4.chr4_GL389869_random     38490 196 -     69473 I

a score=108070.000000
s hg38.chr4_KI270925v1_alt        205694 70 +    555799 CCCCTTTCCTACACCA-CCCTTTCCCACACCACCCCTTTCCTACACCAACCCTTTCCTACACCAACCCTTC
s ponAbe2.chr4_random            3863227 71 -  23176937 ctgttttcctacaccaaccctttcctacgacacccctttcctacaccacccctttcctacaccaaccgttt
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765435 70 + 115148730 CCCCTTTCCTACACCA-CCCTTTCCTACACTACCCCTTTCCTACACCAGCCCTTTCCTATACCACCCCTTT
i nomLeu3.chr7b                T 127 C 0
s rheMac3.chr5                 183583489 70 + 184069350 cccctttcctacacca-tcatttcctacaccaccccttgcctacaccccccctatcctacaccaccccttt
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188967043 70 + 189454096 CCCCTTTCCTACACCA-CCCTTTCCTACACCACCCCTTTCCTACACCAACCCTTTCCTACACCAACCCTTT
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178390255 68 + 178775436 cccctttcctacacca-cccttccctacacca-cccttccctacaccaaccctttcctacacca-cccttt
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135325351 70 + 135778131 TCCCTTTCCTACACCA-CCCTTTCCTACACCACCCCTTTCCTACACCACCCCTATCCTACACCAACCCCTC
i chlSab2.chr7                 C 0 I 43
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e panTro4.chr4_GL389869_random     38490 196 -     69473 I

a score=9484.000000
s hg38.chr4_KI270925v1_alt        205764 6 +    555799 CCTACA
s panTro4.chr4_GL389869_random     38686 6 -     69473 cctata
i panTro4.chr4_GL389869_random I 196 C 0
s ponAbe2.chr4_random            3863298 6 -  23176937 cctata
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765505 6 + 115148730 CCTACA
i nomLeu3.chr7b                C 0 I 148
s rheMac3.chr5                 183583559 6 + 184069350 cctcca
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188967113 6 + 189454096 CCTACA
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178390323 6 + 178775436 cctaca
i papAnu2.chr5                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325421 43 + 135778131 I

a score=5325.000000
s hg38.chr4_KI270925v1_alt        205770 3 +    555799 CCA
s panTro4.chr4_GL389869_random     38692 3 -     69473 cca
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3863304 3 -  23176937 cca
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765659 3 + 115148730 CTA
i nomLeu3.chr7b                I 148 C 0
s rheMac3.chr5                 183583565 3 + 184069350 cca
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188967119 3 + 189454096 CCA
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178390329 3 + 178775436 cca
i papAnu2.chr5                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e chlSab2.chr7                 135325421 43 + 135778131 I

a score=66261.000000
s hg38.chr4_KI270925v1_alt        205773 31 +    555799 CCCTTT-CCTACACCACCCCTTTCCTGCACCA
s panTro4.chr4_GL389869_random     38695 31 -     69473 cccttt-cctacaccacccctttcctgcacca
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3863307 31 -  23176937 cccttt-cctacaccacccctttcctacccca
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765662 31 + 115148730 CGCTTT-CCTGCACCACCCCTTTCCTACACCA
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183583568 32 + 184069350 ccccttgcctacaccacccctatcctacacca
i rheMac3.chr5                 C 0 I 15
s macFas5.chr5                 188967122 31 + 189454096 CCCTTT-CCTACACCACCCCTTTCCTACACCA
i macFas5.chr5                 C 0 I 128
s papAnu2.chr5                 178390332 30 + 178775436 cccttt-cctacacca-tcctttcctacacta
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135325464 31 + 135778131 CCCTTT-CCTACACCATCCCTTTCCTACACCA
i chlSab2.chr7                 I 43 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C

a score=-5289.000000
s hg38.chr4_KI270925v1_alt        205804 1 +    555799 -C
s panTro4.chr4_GL389869_random     38726 1 -     69473 -a
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3863338 1 -  23176937 -a
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765693 1 + 115148730 -A
i nomLeu3.chr7b                C 0 I 162
s rheMac3.chr5                 183583615 1 + 184069350 c-
i rheMac3.chr5                 I 15 C 0
s papAnu2.chr5                 178390362 1 + 178775436 c-
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135325495 1 + 135778131 C-
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C
e macFas5.chr5                 188967153 128 + 189454096 I

a score=19585.000000
s hg38.chr4_KI270925v1_alt        205805 16 +    555799 CCCTTTCCTACACCAA
s panTro4.chr4_GL389869_random     38727 16 -     69473 ccctttcctacaccaa
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3863339 16 -  23176937 tcctttcctacACCAG
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765856 16 + 115148730 CCCTTTTCTACACCAA
i nomLeu3.chr7b                I 162 C 0
s rheMac3.chr5                 183583616 16 + 184069350 ccCTGTCGGACACCAC
i rheMac3.chr5                 C 0 C 0
s papAnu2.chr5                 178390363 16 + 178775436 ccctGTCGGACACCAC
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135325496 16 + 135778131 TCCTGTCGGACACCAC
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071  0 -  59632846 C
e calJac3.chr3                 190440882  0 - 190850796 C
e macFas5.chr5                 188967153 128 + 189454096 I

a score=2800.000000
s hg38.chr4_KI270925v1_alt        205821 1 +    555799 C
s panTro4.chr4_GL389869_random     38743 1 -     69473 c
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3863355 1 -  23176937 C
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765872 1 + 115148730 C
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183583632 1 + 184069350 C
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188967281 1 + 189454096 C
i macFas5.chr5                 I 128 C 0
s papAnu2.chr5                 178390379 1 + 178775436 C
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135325512 1 + 135778131 C
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071 0 -  59632846 C
e calJac3.chr3                 190440882 0 - 190850796 C

a score=1285586.000000
s hg38.chr4_KI270925v1_alt        205822 479 +    555799 CCTCTCTTCCTG-CCTGCTCATCATTCCCTCTTACACGTGTGTGGTCTCATTCACCCTGTGCTCCACTCCCTATCCCTATCCCTCACATGATCTAACTTACAAACCAGGACTCCTTCTCTTTCACATGCCCCAATCCTTCCACCATCCCCACCCAAATCACCTCCCTCAATAAATACACAGAAGTTggccaggcgtggcagctcacccatgtaatcccagcacattgggaggcagaggcaggcagatcacttgaggtcaggagctcaagaccagcctggccaacaaggtgaaaccctgtctctactaaaaatacaaaaattagcttggcatggtggtgtgttcctgtaatcccagctactcagaaggctgacatgagaatcgtttgaacccaggag-gtggagtttgcagtgagccaagatcgcgccacttcacttcagcctggacaacagagcaagaatgcatctc-aaaaaaataaatta
s panTro4.chr4_GL389869_random     38744 479 -     69473 cctctcttccTG-CCTGCTCATCATTCCCTCTTACACATGTGTGGTCTCATTCACCCTGTGCTCCACTCCCTATCCCTATCCTTCACATGATCTAACTTACAAACCAGGACTCCTTCTCTTTCACATGCCCCAATCCTTCCACCATCCCCACCCAAATCACCTCCCTCAATAAATACACAGAAGTTggccaggcgtggcagctcacccatgtaatcccagcacattgggaggcagaggcaggcaaatcacttggggtcaggagctcaagaccagcctggccaacacggtgaaaccctgtctctactaaaaatacaaaaattagctgggcatggtggtgtgtgcctgtaatcccagctacttgggaggctgacatgagaatcgtttgaacccaggag-gtggaggttgcagtgagccgagattgcgccacttcacttcagcctggacaacagagcaagaatccatcac-aaaaaaataaatta
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3863356 479 -  23176937 CCTCTCTTCCTG-CCTGCTCATCATTCCCTCTTATACGTGTGTGGTCTCATTCACCCTGTGCTCCACTCCCTATCCTTCTCCCTCACATGTTCCAATTTACAAACCAGGACTCCTTCTCTTTCACATGCCCCAATCCTTCCACCATCCCCACCCAAATCACCTCCCTCAATAAATACACAGAAGTTggctaggtgtggcagcttactcatgtaatcccagcacattgggaggcagagacagacagatcacttgaggtcaggaactcaagaccagcctggccaacatggtgaaaccctgtctccactaaaaatacaaaaattagctgggcatggtggtgtgtgcctgtaatctcagctactcgggaggctgagatgagaatcgtttgaacccaggag-gtggaggttgcagtgagccgagatcgtgccacttcacttcagcctgggcaacagagcaagaatccatctc-aaaaaaataaatta
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113765873 479 + 115148730 CCTCTCTTCCTG-CCTGCTCATCATTCTGTCTTACACGTGTGTGGtctcattcaccctgtgctccactccctatccctctccctcACATGATCTAACTTACAAACCAGGACTCCTTCTCTTGCACATGCCCCAATCCTTCCACCATCTCCACTCAAATCACCTCCCTCAATAAATACACAGAAGTTggccaggcatggcagcttacccatgtaatcccagaacattgggaggccgaggcaggcagatcacttgaggtcaggagctcaagaccagcctggccaacatggtgaaactctgtctctactaaaaatacaaaaattagctgggcatggtggtgtgtgcctgtaatcccatctacttgggaggctgagatgagaatcatttgaacccaggag-gtggaggttgcagctagccgagatcgctccacttcacttcagcctgggcaacagagcaagaatccatctc-aaaaaaaaaaatta
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183583633 475 + 184069350 CCTCTCCTCCTG-CCTGCTCATCATTCCCTCTTACACATGT-TGGTCTCACTCACCCTGGGCTCCACTCCCCATCCCTCTCCCTCACATGGTC----TTACAAACCAGGACACCTTCTGTTTCACATGCCCTAATCCTTACACCACCCCTACCCAAATCACCTCCCTCAATAAATACACAGAAGTTggccgggtgtggtggctcacacctgtaatcccagcactttgggaggccgaggcgggtggatcacttgaggtcaggagctcgagaccagcctggccaacatggtgaacccctgtctctactaaaaatataaaagttagaggggcatggtggtgcgtgcctgtaatcccagctactcgggaggctgagacaagaatcatttgaacccaggag-gcggaggttgcagtgagccaagattatgccacttcacttcagcctggacaacagagcaagaatctatctcaaaaaaaataaatta
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188967282 475 + 189454096 CCTCTCCTCCTG-CCTGCTCATCATTCCCTCTTACACATGT-TGGtctcactcaccctgggctccactccctatccctctccctcACATGGTC----TTACAAACCAGGACACCTTCTGTTTCACATGCCCTAATCCTTACACCACCCCTACCCAAATCACCTCCCTCAATAAATACACAGAAGTTggccgggtgtggtggctcacacctgtaatcccagcactttgggaggccgaggcgggtggatcacttgaggtcaggagctcgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatataaaagttagtggggcatggtggtgcgtgcctgtaatcccagctactcgggaggctgagacaagaatcatttgaacccaggag-gcggaggttgcagtgagccaagattatgccacttcacttcagcctggacaacagagcaagaatctatctcaaaaaaaataaatta
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178390380 476 + 178775436 CCTCTCCTCCTG-CCTGCTCATCATTCCCTCTTACACATGT-TGGTCTCACTCACCCTGGGCTCCACTCCCTATCCCTCTCCCTCACATGGTC----TTACAAACCAGGACACCTTCTGTTTCACATGCCCTAATCCTTACACCACCCCTACCCAAATCACCTCCCTCAATAAATACACAgaagttggccgggtgtggtggctcccacatataatcccagcactttgggaggccgaggcgggtggatcacttgaggtcaggagctcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatataaaagttagtggggcatggtggtgcgtgcctgtaatcccagctactcgggaggctgagacaagaatcatttgaacccaggagagcggaggttgcagtgagccaagatcatgccacttcacttcagcctggacaacagagcaagaatctatctcaaaaaaaataaatta
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135325513 474 + 135778131 CCTCTCCCCCCA-CCTGCTCATCATTCCCTCTTACATGTGT-TGGTCTCATTCACCCTGGGCTCCACTCCCTATCCCTCTCCCTCACATGATC----TTACAAACCAGGACACCTTCTGTTTCACATGCCCTAATCCTTACACCACCCCTACCCGAATCACCTCCCTCAATAAATACACAGAAGTTggccgggtgtggtggctcacgcatgtaatcccagcactttgggaggccgaggcggctggatcacttgaggtcaggagctcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatatacaagttagtggggcatggtggtgtgtgcctgtaatcccagctactcaggaggctgagacaatagtcgtttgaacccaggag-gcagaggttgcagtgagccaagatcgtgccacttcacttcagcctggacaacagagcaagaatctatctc-aaaaaaataaatta
i chlSab2.chr7                 C 0 C 0
s calJac3.chr3                 190440882 423 - 190850796 CCCGTCTTCCTGCCCTGCTCATCGTCCCTCTTTACACGTGTGTGGTCTCATTCATCCTGTGCTCAAGTCCCTATTCCTCTCTCACACATAGTCTAACTCACAA------ACTTCTTCTCTTTCACATGCCCCAATTCTTCTACCATCCCTGCTCCAATCACCTGCCTCAGCCAATACACGGAAGTTgaccaggtgtggtggctcacgcctgtaatcccagcactttgggaggtcaaggc--------------aggtccagagttcaagaccagcctgaccaatgtggtgaaaccccatcttgactaaaaatacaaaaa-------------------------agtaatcccggctactcggcaggctgagacgagaatcctttgaacccaggag-gcggagtttgcagtgagccgagattgtgctgc----------actgggagacagggcaaaactccatc---taaaaaataaaTTA
i calJac3.chr3                 C 0 C 0
e mm10.chr8                     87579384 176 - 129401213 I
e canFam3.chr16                 17875071   0 -  59632846 C

a score=11642.000000
s hg38.chr4_KI270925v1_alt        206301 4 +    555799 aata
s panTro4.chr4_GL389869_random     39223 4 -     69473 aata
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3863835 4 -  23176937 aata
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113766352 4 + 115148730 aata
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183584108 4 + 184069350 aata
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188967757 4 + 189454096 aata
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178390856 4 + 178775436 aata
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135325987 4 + 135778131 aata
i chlSab2.chr7                 C 0 C 0
s calJac3.chr3                 190441305 4 - 190850796 ATTA
i calJac3.chr3                 C 0 C 0
s mm10.chr8                     87579560 4 - 129401213 AGTC
i mm10.chr8                    I 176 C 0
e canFam3.chr16                 17875071 0 -  59632846 C

a score=2310930.000000
s hg38.chr4_KI270925v1_alt        206305 688 +    555799  
s panTro4.chr4_GL389869_random     39227 692 -     69473  
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3863839 690 -  23176937  
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113766356 691 + 115148730  
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183584112 691 + 184069350  
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188967761 691 + 189454096  
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178390860 691 + 178775436  
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135325991 689 + 135778131  
i chlSab2.chr7                 C 0 C 0
s calJac3.chr3                 190441309 683 - 190850796  
i calJac3.chr3                 C 0 C 0
s mm10.chr8                     87579564 647 - 129401213  
i mm10.chr8                    C 0 I 3
s canFam3.chr16                 17875071 718 -  59632846  
i canFam3.chr16                C 0 C 0

a score=805637.000000
s hg38.chr4_KI270925v1_alt        206993 299 +    555799 CAACAA---AAAAAGCTAACAATATATTTGTGTTTGAACATCTACTAAATTCTTTCCCACT-ATTGCAGCCGGAAGC--AATGCCACGCACAGCCAGATAATGTGGGCAGAGAGCACAGAGTCCAGGCATGGTTTAAATGCCGAGATAAGGG------AACGTGAGTGCTTCTTTGCTTCAAATGTCC--TAAATCAGCTTATTTTTCATTAGCAACAATCATCAT----------ACACACACACA-----------TTG---ACATTGAAGCTTCCATAATAGTGTTCTTACATTTTCAATCTGGTTAATTGAATGAGAAAACAAATTCTCCCAC
s panTro4.chr4_GL389869_random     39919 302 -     69473 CAACAACAAAAAAAGCTAACAATGTATTTGTTTTTGAACATCTGCTAAATTCTTTCCCACT-ATTGCAGCCGGAAGC--TATGCCACGCACAGCCAGATAATGTGGGCAGACAGCACAGAGTCCAGGCACTGTTTAAATGCTGAGATAAGAG------AACGTGAGGGCTTCTTTGCTTCAAATGTCC--TAAATCAGCTTATTTTTAATTAGCAACAATCATCAT----------ACACACACACA-----------TTG---ACATTGAAGCTTCCATAATAGTGTTCTTACATTTTCAATCTGGTTAATTGAATGAGAAAACAAATTCTCCTAC
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3864529 299 -  23176937 CAACAA---AAAAAGCTAACTATATATTTGTGTTTGAACATCTACTAAATTCTTTCCCACT-ACTGCAGCTGGAAGC--TACGCCACACACAGCCAGATAATGTGGGCAGAGAGCACATAGTCCAGGCGCTGTTTAAATGCTAAGATAAGGG------AACATGAGTGCTTCTTTGCTTCAAATGTCC--TAAATCGGCTTATTTTTAATTAGCAACAATCATCAT----------ACACACACACA-----------TTG---ACATTGAAGCTTCCATAATAGTGTTCTTACATTTTCAATCTGGTTAATTGAATGAGAAAACAAATTCTCCTAC
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113767047 298 + 115148730 CAA-AA---AAAAAGCTAAGAATATATTTATGTTTGAACATCTACTAAATTCTTTCCCACT-ATTGCAGCTAGAAGC--GATGCCACACACAACCGGATAATGTGGGCAGAGAGCACACAGTCCAGGCACTGTTTAAATGCTGAGATAAGGG------AACGTGAGTGCTTCTTTGCTTCGAACGTCC--TAAATCAGCCTATTTTTAATTAGCAACAATCATCAT----------ACACACACACA-----------TTG---ACATTGAAGCTTCCATAATAGTGTTCTTACATTTTCAATCTGGTTAACTGAATGAGAAACCAAATTCTCCTAC
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183584803 300 + 184069350 CAACA----GAAAAGCTAACAATATATTTGTGTTTGAACATCTGCTAAATTCTTTCTCACT-ATTGCAGCTGGAAGC--TATGCCAGGCACAGCCAGATAATGTGGGCAGAGAGCACACAGTCCAGGCGCTGTATAAATGCTGAAATAAGGG------AATGTGAGTGCTTCCTCGCTTCAAACGTCC--TAAATCGGCTTATTTTTAATTAGCAACAATCGTCAT--------ACACACACACACA-----------TTG---ACATTGAAGCTTCCATAATAGTGTTCTTGCATTTTCAATTTGGTTAATTGAATGAGAAAACAAATTCTCCTAC
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188968452 300 + 189454096 CAACA----GAAAAGCTAACAATATATTTGTGTTTGAACATCTGCTAAATTCTTTCTCACT-ATTGCAGCTGGAAGC--TATGCCAGGCACAGCCAGATAATGTGGGCAGAGAGCACACAGTCCAGGCGCTGTATAAATGCTGAAATAAGGG------AATGTGAGTGCTTCCTCACTTCAAACGTCC--TAAATCGGCTTATTTTTAATTAGCAACAATCGTCAT--------ACACACACACACA-----------TTG---ACATTGAGGCTTCCATAATAGTGTTCTTGCATTTTCAATTTGGTTAATTGAATGAGAAAACAAATTCTCCTAC
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178391551 302 + 178775436 CAACA----GAAAAGCTAACAATATATTTGTGTTTGAACATCTGCTAAACTCTTTCTCACT-ATTGCAGCTGGAAGC--TATGCCAGGCACAGCCAGATAATGTGGGCAGAGAGCACACAGTCCAGGCGCTGTATAAATGCTGAAATAAGGG------AATGGGAGTGCTTCTTCGCTTCAAACGTCC--TAGATCGGCTTATTTTTAATTAGCAACAAtcgtcat------acacacacacacaca-----------ttg---acatTGAAGCTTCCATAATAGTGTTCTTGCATTTTCAATTTGGTTAAttgaatgagaaaacaaattctcCTAC
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135326680 308 + 135778131 CAACA----GAAAAGCTAACAATATATTTGTGTTTGAACATCTACTAAATTCTTTCTCACT-ATTGTGGCTGGCAGC--TATGCCAGGCACAGCCAAATAATGTGGGCAGAGAGCACACAGTCCAGGCGCTGTATAAATGCTGAAATAAGGG------AATGTGAGTGCTTCTTCGCTTCAAACGTCC--TAAATCGGCTTATTTTTAATTAGCAACAATCGTcatacacacacacacacacacaca-----------TTG---ACATTGAAGCTTCCATAATAGTGTTCTTACATTTTCAATTTGGTTAATTGAATGAGAAAACAAATTCTCCTAC
i chlSab2.chr7                 C 0 C 0
s mm10.chr8                     87580214 298 - 129401213 CACCC----ACAAAATTAACAAAGTATTT-TGTTTTGATACTTATTAAA--CTTCCCCAGT-AATAAACGTGGAAGCATTACATCACATGTAACAAGGCACATGAGGAAGAGAGCAGGCA-CCCAACATCCATGGGAATCATGTGATAACAGAAAG-TAATATAAGCGCTTCTTTGC----AACATTCAGTGAAAGGTATTGTCTTTCCTTATCAGCAATGTCCAC--------CCACATACATTTC-----------TTGCCTACCTTTAGACCTCTGCAATAGCATT------GTTTCAGTTTAGTTAACTGGATGAGGCAAGAGAACCTCCTAC
i mm10.chr8                    I 3 I 551
s canFam3.chr16                 17875789 317 -  59632846 ---------TAACAACTAACAAAATATTTTTGTTTGAGTACTTACTAAACCCCTTTCCACTAATCACACCTATAAGCATTAGGACATTCATGGC-AAATCATTTGGACAGAGAGCATATTGCCTAGGCCCTTTGTAAATATTGTCATAGGGGGAGGACAATATAAGCACT---TTGCTTCAAATGTCC--CAAATCAGTTAACTTTTAATTAGTGACAATCATCACACACAAACATACATACACACAAATATTTATCTTCT---ATAATGAGGATTCTAAAATAGTGGTTTTT--ATTCCAACTTGGTTAATTGAATGAGGCAACAGATTCTCCTAG
i canFam3.chr16                C 0 C 0
e calJac3.chr3                 190441992   0 - 190850796 C

a score=82124.000000
s hg38.chr4_KI270925v1_alt        207292 27 +    555799 TAGACAGGTGCTCCAAAGTGAAATTTG
s panTro4.chr4_GL389869_random     40221 27 -     69473 TAGATATGTGCTCCAAAGTGAAATTTG
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3864828 27 -  23176937 TAGATAGGTGCTCCAAAGTGAAATTTG
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113767345 27 + 115148730 TAGATAGGTGCTCCAAAGTGAAATTTA
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183585103 27 + 184069350 TAGATAGGTGCTCCAAAGTGAAATTTA
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188968752 27 + 189454096 TAGATAGGTGCTCCAAAGTGAAATTTA
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178391853 27 + 178775436 TAGATAGGTGCTCCAAAGTGAAATTTA
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135326988 27 + 135778131 TAGATAGGTGCTCCAAAGTGAAATTTA
i chlSab2.chr7                 C 0 C 0
s canFam3.chr16                 17876106 27 -  59632846 TAGACAGGTGCTCAGAAGTGGAATTTA
i canFam3.chr16                C 0 C 0
e mm10.chr8                     87580512 551 - 129401213 I
e calJac3.chr3                 190441992  0 - 190850796 C

a score=397528.000000
s hg38.chr4_KI270925v1_alt        207319 127 +    555799 TGTTTTCTGTGGGATGAGGAATGCTTTCAAATGGAACATT-CTTGATTAAAGAGCCTGGACCATACAATTCATGTTGTGGGGAGGAAATGTGGcttcagaacataatgagaactggttcggtctgcag
s panTro4.chr4_GL389869_random     40248 128 -     69473 TGTTTTCTGTGGGATGAGGAATGCTTTCAAATTGAACATTTCTTGATTAAAGAGCCTGGACCATACAATTCATGTTGTGGGGAGGAAATGTGGcttcagaacataatgagaactggttcggtctgcag
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3864855 127 -  23176937 TGTTTTCTGTGGGATGAGGAATGCTTTCAAATGGAACATT-CTTGATTAAAGAGCCTGGACCATACAATTCATGTTGTGGGGAGGAGATTTGGCTTCAGAACATAATGAGAACTGGTTTGGTCTGCAG
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113767372 127 + 115148730 TGTTTTCTGTGGGATGAAGAATGCTTTCAAATGGAACATT-CTTGATTAAAGAGGCTGGACCATACAATTCATGTTGTGGGGAGGAAATTTGGcttcagaacataatgagaactggttcggtctgcag
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183585130 127 + 184069350 TGTTTTCTGCTGGATGAGGAATGCCTTCAAATGGAACATT-CTTGATTGAAGAGCCTGGACAATACCATTCATGTTGCAGAGGGAAAATTTGGCTTCAGAACATAATGAGAACTGGTTTGGTCTGCAG
i rheMac3.chr5                 C 0 I 1
s macFas5.chr5                 188968779 127 + 189454096 TGTTTTCTGCTGGATGAGGAATGCCTTCAAATGGAACATT-CTTGATTGAAGAGCCTGGACAATACCATTTATGTTGCAGAGGGAAAATTTGGCTTCAGAACATAATGAGAACTGGTTTGGTCTGCAG
i macFas5.chr5                 C 0 I 1
s papAnu2.chr5                 178391880 127 + 178775436 TGTTTTCTGCCGGATGGGGAATGCCTTCAAATGGAACATT-CTTGATTGAAGAGCCTGGACAATACCATTCATGTTGCAGAGGGAAAATTTGGCTTCAGAACATAATGAGAACTGGTTTGGTCTGCAG
i papAnu2.chr5                 C 0 I 1
s chlSab2.chr7                 135327015 127 + 135778131 TGTTTTCTGCTGGATGAGGAATGCCTTCAAATGGAACGTT-CTTGATTGAAGAGCCTGGACAATACCATTCATGTTGCAGAGGGAAAATTTGGCTTCAGAACATAATGAGAACTGGTTTGGTCTGCAG
i chlSab2.chr7                 C 0 I 1
s mm10.chr8                     87581063 117 - 129401213 TGTCTTCTTGTAGGTAAGAAATTCCTCCAAAAAGAATTTT-CTGGATTAAAGAGCCTGGACAATGCAAGTCATATTGAGGACAGAAAATTTAGCTTCAgagtgtg---------ggttctgt-tgctc
i mm10.chr8                    I 551 I 2
s canFam3.chr16                 17876133 127 -  59632846 TGTTTTCTGCTACATATGATATTCCTTCAAATGGAACATC-CTTGATTAAAGAGACCAGACAATACGATTCATGCTGAAGGCAGGAAATTTGGcttcagaacataatgagaatgggttcatcctgcag
i canFam3.chr16                C 0 C 0
e calJac3.chr3                 190441992   0 - 190850796 C

a score=93597.000000
s hg38.chr4_KI270925v1_alt        207446 113 +    555799 cctttcccgttctcattatgatcttcactatgagaacagattcatattatggcattttcaactcctattgtcagcttctgacacaa-tatgaggtattaggacagtaactgggg
s panTro4.chr4_GL389869_random     40376 113 -     69473 cttttcccgttctcattacgatcttcactatgagaacagattcatattatggcattttcaactcctattgtcagcttctgacacaa-tatgaggtattaggacagtaactgggg
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3864982 113 -  23176937 CTTTTCCCATTCTCATTACAATCTTCACTGTGAGAACAGATTCATATTATGGCATTTTCAACTCCTATTGTTAGCTTCTGTCACAA-TATGAGGTATTAGAACACTAACTGGGG
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113767499 113 + 115148730 cttttcccgttctcactacaatcttcactgtgagaacagattcatattatggcattttcaactcctattgtcagcttctgtcacaa-cgtgaggtgttaggactctaactgggg
i nomLeu3.chr7b                C 0 C 0
s mm10.chr8                     87581182 105 - 129401213 catttcctgctct---tatattcttagccatgagtacagatgcatgctgtgacttcatcaattctaattatcgtctttcatcacaagcactaagcattggaattttac------
i mm10.chr8                    I 2 C 0
s canFam3.chr16                 17876260 107 -  59632846 cttttcccattttcattacaatcgttgtcatgagaatagattcatattgtggcattttcaacttctattatcatctt-tgtcacag-tatgaggtattagaattttaaa-----
i canFam3.chr16                C 0 C 0
e calJac3.chr3                 190441992   0 - 190850796 C
e chlSab2.chr7                 135327142   1 + 135778131 I
e papAnu2.chr5                 178392007   1 + 178775436 I
e macFas5.chr5                 188968906   1 + 189454096 I
e rheMac3.chr5                 183585257   1 + 184069350 I

a score=1702363.000000
s hg38.chr4_KI270925v1_alt        207559 689 +    555799  
s panTro4.chr4_GL389869_random     40489 690 -     69473  
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3865095 635 -  23176937  
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113767612 689 + 115148730  
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183585258 632 + 184069350  
i rheMac3.chr5                 I 1 C 0
s macFas5.chr5                 188968907 632 + 189454096  
i macFas5.chr5                 I 1 C 0
s papAnu2.chr5                 178392008 632 + 178775436  
i papAnu2.chr5                 I 1 C 0
s chlSab2.chr7                 135327143 633 + 135778131  
i chlSab2.chr7                 I 1 C 0
s mm10.chr8                     87581287 621 - 129401213  
i mm10.chr8                    C 0 C 0
s canFam3.chr16                 17876367 622 -  59632846  
i canFam3.chr16                C 0 C 0
e calJac3.chr3                 190441992   0 - 190850796 C

a score=74434.000000
s hg38.chr4_KI270925v1_alt        208248 24 +    555799 gcaagcacttcgataagtacaaag
s panTro4.chr4_GL389869_random     41179 24 -     69473 gcaagcacttcgataagtacaaag
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3865730 24 -  23176937 gcaagcacttcgataagtacaaag
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113768301 24 + 115148730 gtacgcacttcgataagtacaaag
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183585890 22 + 184069350 gcaagcactccgacaagtacaa--
i rheMac3.chr5                 C 0 I 47
s macFas5.chr5                 188969539 22 + 189454096 gcaagcactccgacaagtacaa--
i macFas5.chr5                 C 0 I 93
s papAnu2.chr5                 178392640 24 + 178775436 GCAAGCACTCCGACAAGTACAAAG
i papAnu2.chr5                 C 0 I 91
s chlSab2.chr7                 135327776 24 + 135778131 acaagcactccgacaagtacaaag
i chlSab2.chr7                 C 0 I 604
s calJac3.chr3                 190441992 24 - 190850796 GCAAGCACTTCGACAAGTACAGAC
i calJac3.chr3                 C 0 C 0
s mm10.chr8                     87581908 24 - 129401213 TCAAGCAACTTGATCAATCCAAAG
i mm10.chr8                    C 0 C 0
s canFam3.chr16                 17876989 21 -  59632846 gtaaacacttc---aagtatgaag
i canFam3.chr16                C 0 C 0

a score=203257.000000
s hg38.chr4_KI270925v1_alt        208272 87 +    555799 tg-tctttacaaacatgaCACAGTCATTTAAAAATCATCCTTAAGTTAGGCATAC---ACTG----CAAAGTGAGGCCTTATTT-GAGGATGTTGT
s panTro4.chr4_GL389869_random     41203 87 -     69473 tg-tctttacaaacatgaCACAGTCATTTAAAAATCATCCTTAAGTTAGGCACAC---ACTG----CAAAGTGAGGCCTTATTT-GAGGATGTTGT
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3865754 86 -  23176937 tg-tctttacaaacatgaCACAGTCATTTAAAAATCATCCTTAAGTTAGGCACAC---ACTG----CAAAGTGAGGCCTTATTT-GAGGATGTTA-
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113768325 84 + 115148730 tg-tcttgacaaaCATCACACAGTCATTTAAAAATCATCCTTAAGTCAGGCACAC---ACTG----CAAAGTGAGGCCTTATTT-GAGGATGT---
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183585959 86 + 184069350 TG-TCTTTACAAACATGATGTGGTCATTTAAAAATCATCCTTAAGTCAGGCACAC---ACTG----CAAACTGAGGCCTTG-TT-GAGGATGTTAT
i rheMac3.chr5                 I 47 C 0
s macFas5.chr5                 188969654 86 + 189454096 tg-tctttacaaacatgatgtggtcattTAAAAATCATCCTTAAGTCAGGCACAC---ACTG----CAAACTGAGGCCTTG-TT-GAGGATGTTAT
i macFas5.chr5                 I 93 C 0
s papAnu2.chr5                 178392755 86 + 178775436 TG-TCTTTACAAACATGATGtggtcatttaaaaatcatccttAAGTCAGGCACAC---ACTG----CAAACTGAGGCCTTG-TT-GAGGACgttat
i papAnu2.chr5                 I 91 C 0
s calJac3.chr3                 190442016 87 - 190850796 TG-TCTTTGCAAACATGACACGGGCATTTAAAAATCATCCTTAAGTTAGAAACAT---ACTG----CAAAGTAAGGCCTTATTT-GAGGATGTTGT
i calJac3.chr3                 C 0 I 310
s mm10.chr8                     87581932 68 - 129401213 TGCTTTTCACAAACATGACAGAATCATTACTAAACCCTCTTGAATATGGTCCCCTCTGACTG----CTAGCT------------------------
i mm10.chr8                    C 0 C 0
s canFam3.chr16                 17877010 92 -  59632846 tg-ttttcacaaacacaacatgatccttattaAATCATCTTTAAATGAGGCATAC---ACTGACTATTACATAAAGCCCCATTTGGGGGATACTAT
i canFam3.chr16                C 0 C 0
e chlSab2.chr7                 135327800 604 + 135778131 I

a score=151950.000000
s hg38.chr4_KI270925v1_alt        208359 58 +    555799 TATAAAATTCATAACTGAGGCCTGCAATTTCAAGGCAAAGTGGTGACAGAAACCTGTG
s panTro4.chr4_GL389869_random     41290 58 -     69473 TATAAAATTCATAACTGAGGCCTCCAATTTCAAGGCAAAGTGGTGACAGAAACCTGTG
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3865840 58 -  23176937 TATAAAATTCATAACTGAGGCCTCCAATTTCAAGGCAAAGTGGTGACGGAAACCTGTG
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113768409 58 + 115148730 TATAAAATTCATAACTGAGGCCTCCAATTTCAAGGCAAGGTGGTGACAGAAACCTGTG
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183586045 58 + 184069350 TATAAAATTCATAACTGAGGACTCCAATTTCCAGGCAAAGTGGTGGCGGAAACCTGTG
i rheMac3.chr5                 C 0 I 191
s macFas5.chr5                 188969740 58 + 189454096 TATAAAATTCATAACTGAGGACTCCAATTTCCAGGCAAAGTGGTGGCGGAAACCTGTG
i macFas5.chr5                 C 0 I 191
s papAnu2.chr5                 178392841 58 + 178775436 tataaaattcataacTGAGGACTCCAATTTCCAGGCAAAGTGGTGGCAGAAACCTGTG
i papAnu2.chr5                 C 0 I 192
s calJac3.chr3                 190442413 40 - 190850796 taaaaaaTCCATAACTGAGGCCTCCAATTTTTAGG------------------CTGTG
i calJac3.chr3                 I 310 C 0
s mm10.chr8                     87582000 54 - 129401213 TGTGAAACTC----CTAAGGCCTCCATTTGAGAAACCAAGCAGTAGCATCATCATGTA
i mm10.chr8                    C 0 C 0
s canFam3.chr16                 17877102 58 -  59632846 TATAAAATTCATAACTGAGGCCTCCAGCCTCTGGTCAAAGGGGTGGCATCAACTAGCA
i canFam3.chr16                C 0 C 0
e chlSab2.chr7                 135327800 604 + 135778131 I

a score=6399.000000
s hg38.chr4_KI270925v1_alt        208417 5 +    555799 GTGTA
s panTro4.chr4_GL389869_random     41348 5 -     69473 GTGTA
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3865898 5 -  23176937 GTGTA
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113768467 5 + 115148730 GTGTG
i nomLeu3.chr7b                C 0 C 0
s calJac3.chr3                 190442453 5 - 190850796 GTGTA
i calJac3.chr3                 C 0 I 4
s mm10.chr8                     87582054 5 - 129401213 GCATA
i mm10.chr8                    C 0 I 4
s canFam3.chr16                 17877160 5 -  59632846 GTGAA
i canFam3.chr16                C 0 C 0
e chlSab2.chr7                 135327800 604 + 135778131 I
e papAnu2.chr5                 178392899 192 + 178775436 I
e macFas5.chr5                 188969798 191 + 189454096 I
e rheMac3.chr5                 183586103 191 + 184069350 I

a score=6119012.000000
s hg38.chr4_KI270925v1_alt        208422 1678 +    555799  
s panTro4.chr4_GL389869_random     41353 1675 -     69473  
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3865903 1769 -  23176937  
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113768472 1731 + 115148730  
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183586294 1639 + 184069350  
i rheMac3.chr5                 I 191 C 0
s macFas5.chr5                 188969989 1640 + 189454096  
i macFas5.chr5                 I 191 C 0
s papAnu2.chr5                 178393091 1639 + 178775436  
i papAnu2.chr5                 I 192 C 0
s chlSab2.chr7                 135328404 1621 + 135778131  
i chlSab2.chr7                 I 604 C 0
s calJac3.chr3                 190442462 1634 - 190850796  
i calJac3.chr3                 I 4 C 0
s mm10.chr8                     87582063 1766 - 129401213  
i mm10.chr8                    I 4 I 36
s canFam3.chr16                 17877165 1644 -  59632846  
i canFam3.chr16                C 0 C 0

a score=78445.000000
s hg38.chr4_KI270925v1_alt        210100 21 +    555799 TTTACTTTCTACAGTTTTTAA
s panTro4.chr4_GL389869_random     43028 21 -     69473 TTTACTTTCTACAGTTTTTAA
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3867672 21 -  23176937 TTTACTTTCTACAGTTTTTAA
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113770203 21 + 115148730 TTTACTTTCTACAGTTTTTAA
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183587933 21 + 184069350 TTTACTTTCTACAGTTTTTTA
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188971629 21 + 189454096 TTTACTTTCTACAGTTTTTAA
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178394730 21 + 178775436 tttactttctacagtttttaa
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135330025 21 + 135778131 TTTACTTTCTACAGTTTTTAA
i chlSab2.chr7                 C 0 C 0
s calJac3.chr3                 190444096 21 - 190850796 TTTACTTTCTCTAGTTTTTAA
i calJac3.chr3                 C 0 C 0
s canFam3.chr16                 17878809 21 -  59632846 TTTACTTCCTATAGTCCTTAA
i canFam3.chr16                C 0 I 8
e mm10.chr8                     87583829 36 - 129401213 I

a score=1314555.000000
s hg38.chr4_KI270925v1_alt        210121 451 +    555799 ATTTTtt---ctttctgctttttcactaggcttcatagatctcccttgcacatgtgcaattttgctgtgagccagaaatttgcacagttcgttctttgaatttgggtctcatgctttctgaggttggcttgttgccaaaactttccttttaaatttttagctgctttttaaggtctaaattctcatttctagcacttttaatcagggacttcatgttttTCTCCATTAATAAAAATTTTAAttttctactgatacataatggatgtagatattttggtagtacatgtgataatttaatgcattcatataatttgtaaaaatgaaactaatgtaattgagtatccaacaccttaaatatttgtctgttttttatgcgagaaacacctgaatgattatcttctaactattctgaactgtacagtggcttgttgtaaactatGATTTCTGGGCGAGA
s panTro4.chr4_GL389869_random     43049 453 -     69473 ATTTTTTTttctttctgctttttcactaggcttcatagatctcccttgcacatgtgcaattttgctgtgagccagaaatttgcatagttcattctttgaatttgggtctcatgctttctgaggttggcttgttgccaaaactttccttttaaatttttagctg-tttttaaggtctaaattctcatttctagcacttttaatcagGGACTTCATTTTTTTCTCCATTAATAAAAATTTTAAttttctactgatacataatggatgtacatattttggtagtacatgtgataatttaatgcattcatataatttgtaaaaatgaaactaatgtaattgagtatccaacaccttaaatatttgtctgttttttatgctagaaacacctgaatgattatcttctaactattctgaactgtacaatagcttgttgtaaactatGATTTCTGGGCAAGA
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3867693 449 -  23176937 ATTTTTT---CTTTCTACTTTTTCACCA-GCTTCATAGATCTCCCTTGCACATGTGCAACTTTGCTGTGAGCCAGAAATTTGCATAGGTTGTCCTGTGAATTTGGGTCTCATGCTTTCTGAGGTTGGCTTGCTGCCAAAACTTTCCTTTTAAATTTTTAGCTGTTTTTTAAGGTCTAAATTCTCATTTCTAGCACTTTTAATCAGGGACTTCAT-TTTTTCTCCATTAATAAAAATTTTAAttttctactgatacataacggatgtacatattttggtggtacatgtgataatttaatgcattcatataatttgtaaaaatcaaactaatgtaattgagtatccaacaccttaaatatttgtctgttttttatgctagaaacacctgaatgattatcttctaactattctgaactgtacagtagcttgttgtaaactatGAGTTCTGGGCAAGA
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113770224 449 + 115148730 ATTTTtt---ctttctgcattttcactaggcttcatagatctcccttgcacatgtgcaattttgctgcgagccagaaatttgcacaggtcgttctttgaatttgggtctcatgctttctgaggctggcttgctgccaaaactttccttgtaaatttttagctgctttttcaggtctaaattctcatttctagcacttttaatcagggacttcat-tttttctCCATTAATAAAAATTTTAAttttctactgacacataatggaggtacatattttggtggtgcatgtgataatttaatgcattcatataatttgtgaaaatcaaactaatgtaattgagtatccaacaccttaaatatttatgt-ttttttatgctagaaacacctgaatgattatcttctaactattctgaactgtacaatagcttgttgtaaactatGATTTCTGGGCAAGA
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183587954 444 + 184069350 ATTTTtt---ctttctgctttttcactaggcttcatagatctgccttgcacatgtgcaatcttgctgttagccagaaatttgcatagttcgttctttgaatttgggtctcatgctttctgaggttggcttgctgctaaaactttccttttaagttttcagctgctttttcaggtctaaattctcatttctaacacttttaatcagggacttcat-tttttctCCATTTATAAAAATTTTAAttttctacttatacataatgg----atatattttggtggtacatgtgataatttcatgcattcatataacttgtaaaaatcagactcatgtaattgagtatccaacaccttaaatatttgtctgttctttatgctagaaacatctgaatgattatcttctaactattctgaactgtacaacagcttgttgtaaacta--ATTTCTGGGcacga
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188971650 448 + 189454096 ATTTTTT---CTTTCTGCTTTTTCACTAGGCTTCATAGATCTGCCTTGCACATGTGCAATATTGCTGTTAGCCAGAAATTTGCATAGTTCGTTCTTTGAATTTGGGTCTCATGCTTTCTGAGGTTGGCTTGCTGCTAAAACTTTCCTTTTAAGTTTTCAGCTGCTTTTTCAGGTCTAAATTCTCATTTCTAACACTTTTAATCAGGGACTTCAT-TTTTTCTCCATTTATAAAAATTTTAAttttctacttatacataatggatgtatatattttggtggtacatgtgataatttcatgcattcatataacttgtaaaaatcagactcatgtaattgagtatccaacaccttaaatatttgtctgttctttatgctagaaacatctgaatgattatcttctaactattctgaactgtacaacagcttgttgtaaacta--ATTTCTGGGcacga
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178394751 448 + 178775436 atttttt---ctttctgctttttcacTAGGCTTCATAGATCTGCCTTGCACATGTGCAATATTGCTGTTAGCCAGAAATTTGCATAGTTCATTCTTTGAATTTGGGTCTCATGCTTTCTGAGGTTGGCTTGCTGCTAAAACTTTCCTTTTAAGTTTTCAGCTGCTTTTCCAGGTCTAAATTCTCATTTCTAACACTTTTAATCAGGGACttcat-tttttctccatttataaaaattttaattttctacttaTACATAATGGATGTACATATTTTGgtggtacatgtgataatttcaTGCATTCATATAACTTGTAAAAATCAGACTCATGTAATTGAGTATCCaacaccttaaatatttgtctgttctttatgctagaaacatcTGAATGATTATCTTCTAACTATTCTGAACTGTACAACAGCTTGTTGTAAACTA--ATTTCTGGGCACGA
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135330046 450 + 135778131 ATTTTTT---CTTTCTGCTTTTTCACTAGGCTTCGTAGAGCTCCCTTGCACATGTGCAATTTTGCTGTTAGCCAGAAATTTGCACAGTTCGTTCTTTGAATTTGGGTCTCATGCTTTCTGAGGTTGGCTTGTTGCTAAAACTTTCCTTTTAAATTTTCAGCTGCTTTTTCAGGTCTAAATTCCCATTTCTAACACTTTTAATCAGGGACTTCAT-TTTTTCTCCATTTATAAAAATTTTAAttttctacttatacataatggatgtacatattttggtggtacacgtgataatttcatgcattcatataacttgtaaaaatcaaactcatgtaattgagtatccaacaccttacatatttgtctgttctttatgctagaaacatctgaatgattatcttctaactattctgaactgtacaacagtttgttgtaaactatggtTTCTGGGcacgg
i chlSab2.chr7                 C 0 C 0
s calJac3.chr3                 190444117 450 - 190850796 TTTTTTT---GTTTCTGCTTTTTTGTTAGGCTTCATAGGCCCCCCTTGCACATGTGTAATTTTGCTGTTAGCCAGAAATTTGCAGAGTTTGGTCTCTGAAAATGGGTCTCATGCTTTCTGAGGTTGGCTTGCTGCCAAAATTTTCCTT-TAACTTTTTAGCTGCTTTTTCAGGTCTAAATTTTCATTCCTAGCACTTTTAATCAGGGACTTCATTTTTTTCTCCATTTATAAAAATtttatttttctcgtaatacataatggatgtacatattttggtggaacacgtgagaatttaatacattcatataatttgcaaaaataaaactaatgtaattgagtatccaacatcttaaatatttgtcttttcattatgctagaaacatccgaatgattatcttctaactattctgaactgtacaatagctcgttgtaaaccatGATTTCTGGGCAAGA
i calJac3.chr3                 C 0 C 0
e mm10.chr8                     87583829  36 - 129401213 I
e canFam3.chr16                 17878830   8 -  59632846 I

a score=40403.000000
s hg38.chr4_KI270925v1_alt        210572 15 +    555799 CCAGCTCCACAGCTA
s panTro4.chr4_GL389869_random     43502 15 -     69473 CCAGCTCCACGGCTA
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3868142 15 -  23176937 CCAGCTCCACGGCTA
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113770673 15 + 115148730 CCAGCTCCATGGCTA
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183588398 15 + 184069350 ccagccccacaggca
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188972098 15 + 189454096 ccagccccacaggca
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178395199 15 + 178775436 CCAGCCCCACAGGCA
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135330496 15 + 135778131 ccagccccacgggca
i chlSab2.chr7                 C 0 C 0
s calJac3.chr3                 190444567 15 - 190850796 CCAGCTTCGTGGGCA
i calJac3.chr3                 C 0 C 0
s canFam3.chr16                 17878838 15 -  59632846 ctggcttcacaaatg
i canFam3.chr16                I 8 C 0
e mm10.chr8                     87583829 36 - 129401213 I

a score=70589.000000
s hg38.chr4_KI270925v1_alt        210587 22 +    555799 CATGATCAGTGTGGCTGCAGAG
s panTro4.chr4_GL389869_random     43517 22 -     69473 CATGATCAGTGTGGCTGCAGAG
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3868157 22 -  23176937 CAGGATTGGTGTGGCTGCAGAG
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113770688 22 + 115148730 CATGAAATGTGTGGCTGCAGAG
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183588413 22 + 184069350 cgtgatctgtgtggctgcagag
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188972113 22 + 189454096 cgtgatctgtgtggctgcagag
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178395214 22 + 178775436 CGTGATCTGTGTGGCTGCAGAG
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135330511 22 + 135778131 catgatctgtgtgtctgcagag
i chlSab2.chr7                 C 0 C 0
s calJac3.chr3                 190444582 22 - 190850796 CATGGTCTGTGTGGCTGCAGAG
i calJac3.chr3                 C 0 C 0
s mm10.chr8                     87583865 22 - 129401213 CAAAATTGCTGTGGTGACACAG
i mm10.chr8                    I 36 I 1
s canFam3.chr16                 17878853 22 -  59632846 tgtgatatgtatgatcacacaa
i canFam3.chr16                C 0 C 0

a score=798719.000000
s hg38.chr4_KI270925v1_alt        210609 303 +    555799 --ACAGgcacttggtttaatgctctact-tcca--agtcctagggtt--cttaata--atttttgaacaaggtacctcacattt-------tcatcgagccttgaaaatagtgtatccagtTAGTTTCCTTAATAATATCGAGGTGTGATATTTAATGTTTCTTTCAGTAAAC--------ATTACCAGTGTGAATACACTGCT-CGGTGTGGCCGTAATGCACTAACGCATTTGTCCTTTGTACCTATG-CTATTGCCAACCACTGAACTAAAGAAGGGAATAAAGATGTAATCCTTGCCCCCAAAGCATTGCAAACATATTGGAGGA
s panTro4.chr4_GL389869_random     43539 303 -     69473 --ACAGgcacttggttttatgctctact-tcaa--agtcttagaatt--cttaata--atttttgaacaaggtacctcacattt-------tcatcgagccttgtaaacagtgtatccagtTAATTTCCTTCATAATATCGAGGTGTGATATTTAATGTTTCTTTCAATAAAC--------ATTACCAGTGTGAATACGCTGCT-CGGTGTGGCCATAATGCACTAACGCATTTTTGCTTTGTACCTATG-TTATTGCCAACCACTGAACTAAAGAAGGGAATAAAGATATAATCCTTGCCCCCAAAGCATTGCAAACATATTGGAGGA
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3868179 303 -  23176937 --AAAGgcacttggtttaatgctctact-tcaa--agtcttaggatt--cttcata--atttttgaacaaggtacctcacattt-------tcatcaagccttgaaaataatgtatccagtTAGTTTCCTTAATGATATTGAGGTGTGATATTTAATGTTTCTTTCAATAAAC--------ATTACCAGTGTTAATACGCTACT-CGGTGTGGCCATAATGCACTAATGCATTTGTCCTTTGTACCTATG-TTATTGCCAACCACTGAACTAAAGAAGGGAATAAAGATGTAATCCTCGTCCTGAAAGCACTGCAAACATAATAGAGGA
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113770710 303 + 115148730 --ACAGgcacttggtttactgctctcct-tcaa--agtcttaggatt--cttaata--atttttgaacaaggtacctcacatct-------tcatcgagtcttgaaaataatgtgcccagtTAGTTTCCTTAATAATACTGAGGTGTGATATTTAATGTTTCTTTCAATAAAC--------ATTACCAGTGTTAATACACTGCT-TGGTGTGGCCATAATGCACTAATGCATTTGTCCTTTGTACCTATG-TTATTGCCAACCACTGAACTAAAGAAGGGAATAAAGATGTAGTCCTTGTCCTCAAAGCATTGCAAACATAAAGGAGGA
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183588435 302 + 184069350 --acaggcccttggtttaatgctccact-tcaa--tgtcttagaatt--cttcata--atttttgaacaacgtacctcacattt-------tcatcgagccttgaaaataatgtacccagtTAGTTTCCTTAACACTTTTTAGGTGTGATATTTAATGTTTCTTTCAATAAAC--------ATTACCAGTGTTAATATGCTGCT-TGGTGTGGCCGTAATGCACCAATGCATTTGTTCTTTGTCCATATA-TTACTGCCAACCATTGAACCAAAGAA-AGCATAAAGATGTAATCCTTGTCCTCAAAGCATTGCAAACATCATGGAGGA
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188972135 302 + 189454096 --acaggcccttggtttaatgctccact-tcaa--tgtcttagaatt--cttcata--atttttgaacaacatacctcacattt-------tcatcgagccttgaaaataatgtacccagtTAGTTTCCTTAACACTTTTTAGGTGTGATATTTAATGTTTCTTTCAATAAAC--------ATTACCAGTGTTAATATGCTGCT-TGGTGTGGCCGTAATGCACCAATGCATTTGTTCTTTGTCCATATA-TTACTGCCAACCATTGAACCAAAGAA-AGCATAAAGATGTAATCCTTGTCCTCAAAGCATTGCAAACATCATGGAGGA
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178395236 302 + 178775436 --ACAGgcacttggtttaatgctctact-TCAA--TGTCTTAGaatt--cttcata--atttttgaACAACGTACCTCACATTT-------TCATCGAGCCTTGAAAATAATGTACCCAGTTAGTTTCCTTAACACTTTTTAGGTGTGATATTTAATGTTTCTTTCAATAAAC--------ATTACCAGTGTTAATATGCTGCT-TGGTGTGGCCGTAATGCACCAATGCATTTGTTCTTTGTCCATATA-TTACTGCCAACCATTGAACTAAAGAA-AGCATAAAGATGTAATCCTTGTCCTCAAAGCATTGCAAACATCATGGAGGA
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135330533 303 + 135778131 --acaggcacttggtttaatgctctact-tcaa--tgtcttagaatt--cttcata--atttttgaacaacgtacctcacattt-------tcatcgaaccttgaaaataatgtacccagtTAGTTTCCTTAATACTTTTTAGGTGTGATATTTAATGTTTCTTTCAATAAAC--------ATTACCAGTGTTAATACGCTGCT-TGGTGTGGCCATAATGCACTAATGCATTTGTTCTTTGTCCATATG-TTACTGCCAACGACTGAACTAAAGAAGGGAATAAAGATGTAATCCTTGTCCTCAAAGCATTGCAAACATCATGCAGGA
i chlSab2.chr7                 C 0 C 0
s mm10.chr8                     87583888 319 - 129401213 --GCAAGGAACAgggctaatgttccact-gccattatacctaacattgatgtaatactagtttttaacatgatgcctcattttt-catttctcattagacattcaaaattatgtagccagtcttTCTTCTCAGTAGTATTTAGAAATAATATTTAGTGTTTTTTTTCACACACACACACAAACTACCAGTATTAACTCACTGCTCTGATGTGTCCATAAACCATAAATATGTTTGTTCATTGTTCATGTATTTACTGACAGCTTCTGGACTAGAACA-AAAATAAATATGCACTCCCTATACTCAGGCAATTACAAATTCATTG-----
i mm10.chr8                    I 1 C 0
s canFam3.chr16                 17878875 296 -  59632846 agcccagaccttggtttaataccccactgtcat--tgccttgaaagt--c--aata--gtttttgaacacggtccctcattttttcatttttcactgggtcctgcaaattaCCTACATAATCCTATACCTTAATAACATTTAGGTGTGAT--------TTTCTTTCAACAAAC--------ATTTCAGGCATTAAAACAGTGCTTTGGTGTGCCTATTATCCACTAATGTATTTGTTCACTGTACATGTG---GTTGTTAATCACTGATCTATAGAAGGGAGcc------cattccatgtccttatggaattccaaatccagtggagaa
i canFam3.chr16                C 0 C 0
e calJac3.chr3                 190444604   0 - 190850796 C

a score=988288.000000
s hg38.chr4_KI270925v1_alt        210912 369 +    555799 ACTTTGTGTCTCTGTATCAGATGGCATGCATTAAATATTCCCCATGAATACTCTTCCTGAATGCATAG----TCACAATTTTATATGAATTTATTCATGCACTAACAGACACATTGTACCCATTATTCTACATGCGTGG-AGGTTGGGACGATGTCTAAAACTCAGG-TCATATCAGGCATTTTGTATCATGGAAAAGAACAGAATGATTCACTATCTAGT-----TGAT---------------------------------------------------------------GATGGTGGAGTTGGGTGGACGTAGCTACAGCGGTTCACAGCGGCCCAAAGACCCTCTGGAAGTATTTCTCAGTAACACCAGGAGATGA-CCCTCAAGACACAAATAATTTT-------CTCTCCCTCCA-CTTGATACGGACAC-AGGTTTATCCATTAA
s panTro4.chr4_GL389869_random     43842 369 -     69473 ACTTAGTGTCTCTGTATCAGATGGCATGCATTAAATATTCCCCATGAATACCCTTCCTGAATGCATAG----TCACAATTTTATATGAATTTATTCATGCACTAACAGACACATTGTACCTATTATTCTAAATGCGTGG-AGGTTGGGACGATGTCTAAAACTCAGG-TCATATCAGGCATTTTGTATCATGGAAAAGAACAGAATGATTCACTATCTAGT-----TGAC---------------------------------------------------------------GATGGTGGAGTTGGGTGGACGTAGCTACAGTGGTTCACCGTGGCCCAAAGACTCTCTGGAAGTATTTTTCAGTAACAACAGGAGATGA-CCCTGAAGACACAAATAATTTT-------CTCTCCCTCCA-TTTGATACGGACAC-AGGTTTATCCATTAA
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3868482 373 -  23176937 ACTTAGTCTCTCTGTATCAGATAGCATGCATTAAATA-TCCCCATGAATACTCTTCCTGAATGCATGGTCACTCACAATTTTATATGAATTTATTTATGCACTAACAGACACATCATACCTATTATTCTAGATGCGTGG-AGGTTGGGATGATGTCTAAAAATCAGG-TCATATCAGGCATTTTGTATCATGGAAAAGAACAGAATGATTCACTAGCTAGT-----TGAT---------------------------------------------------------------GATGGTGGAGTCGGGTGGAAGTAGCTACAGCGGTTCACAGCGGCCCAAAGACCCTCTGGAAGTATTTCTCAGAAACACCAGAAGATGAGCCCTGAAGACACAAATAATTTT-------CTCTCCCTCCA-CTAGATATGGACAC-AGGTTTATCCATTAA
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113771013 345 + 115148730 ACTTAGTGTCTCTGTGTCAGATAGCATGCATTAAATATTCCCCATGAATATTCTTCCTGAATGCATAG----TCAC-ATTTTATATGAATTTATTTATGCACTAACAGACACATTGTACCTATTATTCTAGATGCGTGGAAGGTTGGGAC-ATGTCTAAAAATCAGGCCCATATCAGGCATTTTGTGTCATGGAAAAGAACAGAATGATTCACTCTCTAGC-----TGGT---------------------------------------------------------------GATGGTGGAGTCGGGTGGACGTAGCCACAGCGGTTCACAGCGGCCCAGAGATCCTCTGGAAGTATTTCTCAGAAAC--CAGGAGATGA-CCC----------------------------CTCCCTCCC-CTAGATATGGACAC-AGCTTT-TCCATGAA
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183588737 338 + 184069350 ACGTATTTTCTCTGTGTCAGATAGCATGCATTAAATATTCCCCGTGAATATTCTTCCTGAACGTGTAG----TCACAATTTTATATGAATTTATTTATGCACCAACAGACACATTGCACCTATTATTCTAGATGCGTGG-AGGTTGGGACGATGTTTAAAAATCAGG-TCATATGAGGCACTTTGTGTCATGGAAAAGAACAGAATTATTCACTGTTGATC------------------------------------------------------------------------GATGGTGGAGTCCGGTGGCCGTAGCTACAGCGGTTCA--GCGGCTCC--------------------------AACGCCGGAAGATGACCCCTGAAGACACAAACGATTTT-------CTCTTCCTCCA-CTGGATGTGGATAC-TGGTTTATCCATGAA
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188972437 338 + 189454096 ACGTATTTTCTCTGTGTCAGATAGCATGCATTAAACATTCCCCGTGAATATTCTTCCTGAATGTGTAG----TCACAATTTTATATGAATTTATTTATGCACCAACAGACACATTGCACCTATTATTCTAGATGCGTGG-AGGTTGGGACGATGTTTAAAAATCAGG-TCATATGAGGCACTTTGTGTCATGGAAAAGAACAGAATTATTCACTGTTGATC------------------------------------------------------------------------GATGGTGGAGTCCGGTGGCCGTAGCTACAGCGGTTCA--GCGGCTCC--------------------------AACGCCGGAAGATGACCCCTGAAGACACAAACGATTTT-------CTCTTCCTCCA-CTGGATGTGGATAC-TGGTTTATCCATGAA
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178395538 361 + 178775436 ACGTATTTTCTCTGTGTCAGATAGCATGCATTAAATATTCCCCGTGAATATTCTTCCTGAATGTGTAG----TCacaattttatatgaatttatttatgcACCAACAGACACATTGCACCTATTATTCTAGATGCGTGG-AGGTTGGGACGATGTCTAATAATCAGG-TCATATCGGGCATTTTGCGTcatggaaaagaacagaattaTTCACTGTTGATCACAGCTGAT---------------------------------------------------------------GATGGCGGAGTCGGGTGGCTGTAGCTGCAGCGGTTCA--GCGGCTCCAACGCCGCCCAGCGGCGTTTCTCAGTAACGCCGGAAGATGACCCCT------------GATTTT-------CTCTTCCTCCA-CCGGATGTGGATAT-TGGTTTATCCACGAA
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135330836 370 + 135778131 ACGTATTTTCTCTGTGTCAGATAGCATGCATTAAATATTCCCCGGGAATATTCTTCCTGAATGTGTAG----TCACAATTTTATATGAATTTATTTATGCACCAACTGACACATTGTACCTATTATTCTAGATGCGTGG-AGGTTGGGACGATGTCTAAAAATCAGG-TCATATGAGGCATTTTGTGTCATGGAAAAGAACAGAATTATTCACTGTCCAGC-----TGAT---------------------------------------------------------------GATGGTGGAGTCGGGTGGCCGTAGCTACAGCGGTTCACGGTGGCTCCAATACCGCCCAGCGGCGTTTCTCAGTAACACCAGAAGATGACCCCTGAAGACACAAATGATTTT-------CTCTTCCTCCA-CTTGATGTGGATAC-TGATTTATCCATGAA
i chlSab2.chr7                 C 0 C 0
s calJac3.chr3                 190444604 362 - 190850796 ACTTCCTGTCTCTGTGTCAGATGGCATGTGTTAGATATTCCCTATATATAATCTTCCTGAATGCATAG----TCACAATTTTATATGAATTTATTTAT------------ACATTGCATCTATTATTCTAGATGCAGGG-AGGCTGGGACTATGTTTACAAATCAGG-TCACATCAGGCATTTTGTATCGTGGAAAAGAACAGAATTATTCTC-ATCTAGT-----TGAT---------------------------------------------------------------TAT-GTAGAGTCGAGTGGACACAGCTTCAGTGGGTCACAGTGGCCCA-ATACCCTGTGGCAGTATTTCTCAGTAACACCTGAAGGTGATCCCCGAAGACACACATAATGTTTAATGTACTCTTCTTCCA-CTTGATATAGATAC-TGGTTTATCCATTAA
i calJac3.chr3                 C 0 C 0
s mm10.chr8                     87584207 326 - 129401213 --------TCTCTTCATCAGATAGCAATGACTGAATATTCTCCACGAGTA----------------GA----TCACAATTTTGTATAACTTTGTTCATACGTTAAAAAGTATAATACACTTATTGATCTGCATGCAAAT-AGACTGGGGTGATGTCCAAATATAAGG-CAGTTTCAGGTATTTTGTATCATGAGAAGTAATAAAGTC-TTTGTAATTTAGT-----TGAT---------------------------------------------------------------TTTGATAGAATCAAGTAAAGCCACCTCTAATGGCTTATAGTAGTTTAAAAAAAGTCTATTAAAAAGTCTTAATAATG---------------------CACATAATGTTTT-------CCCTTCTTCCATCTGAATACAAATACAAGGTGTCTCCACTGA
i mm10.chr8                    C 0 I 1735
s canFam3.chr16                 17879171 415 -  59632846 ACTAATTATTTTTGTCTTGGGGAGTATGCATTAAATA------GTGAGTGGTCTTCACAAACATATAC----TCATAATTTCATATGAATTTATTTAGATACTAACAGAAACACT--ATCTATTATTCTAGATATAAGG-GGGTTAGGGTTATGTCTAAAAATCAAG------------AAATTACACCATGAAAATCAAGAAAATTATTCTATAGTTAGC-----TAatctatctatctcctattgattgtgtttctctagaaaaacatgactaaaacaGGAGAGTTTTCCCTGTGTTGGAGTCAGGCAGACACAACCACAGTGGTTCACAATGCTCAAAACACCCTGTGGAAGTATTTCTCAATAACACCTGAGGATGACTCTTGAAGACATAAATCATTTT-------CCATTCCTCCACCTGAATATGGATAC-TGGTTTCTCCATTAA
i canFam3.chr16                C 0 C 0

a score=439733.000000
s hg38.chr4_KI270925v1_alt        211281 146 +    555799 CAGGATTCCGGAGCTAACCAGAAGTACGTCTGATTTGGGTTTTACTCACACACGTGCTGGAAATCCATGCATGAGCTTTGTGAGAAAGGGCACAAAGGAAACCAGCCTGAAGTCTGCAGGGGCCACACAGTGCGAGCCAACAGcag
s panTro4.chr4_GL389869_random     44211 146 -     69473 CAGGATTCCAGAGCTAATCAGAATTACCTCTGATTTGGGTTTTACTCACACACGTGCTGGAAATCCATGCATGAGCTTTGTGAGAAAGGGCACAAAGGAAACCAGCCTGAAGTCTGCAGGGGCCACACAGTGCGAGCCAACAGcag
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3868855 146 -  23176937 CAGGATTCCGGAGCTAACCAGAAGTACGTCTGATTTTGGTTTTACTCACACACGCGCTGGAAATCCATGCATGAGCTTTGTGAGAAAGGACACAAAGGAAACCGGCTTGAAGTCTGCAGGGGCCACACAGTGCGAGCCAACAGcag
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113771358 146 + 115148730 CAAGATTCCGGAGCTAACCAGAAATACGTCTGATTTGGGTTTTACTCACACACATGCTGGAAACCCATGCATGAGCTGTGTGAGAAAGGGCACAAAGGAAACCAGCTTGAAGTCTGCAGGGGCCACACAGTGTGAGCCAACAGcag
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183589075 146 + 184069350 CAGGATTCCAGGACTAACCGGAAGCGTGTCTGATTTTGGTTTGACTCACACGTGTGCTGGAAATCCCTGCAAGAGCTTTGTGAGGACAGGCGCGAACGAAACCAGCCTGACGTCTGCAGAGGCCACACGGTGCGAGCCAACGGcag
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188972775 146 + 189454096 CAGGATTCCAGGACTAACCGGAAGCGTGTCTGATTTTGGTTTGACTCACGCGTGTGCTGGAAATCCCTGCAAGAGCTTTGTGAGGACAGGCGCGAACGAAACCAGCCTGACGTCTGCAGAGGCCACACGGTGCGAGCCAACGGcag
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178395899 146 + 178775436 CAGGATTCCAGAACCAACCAGAAGCGTGTCTGATTTTGGTTTGACTCACACGTGTGCTGGAAGTCCCTGCTAGAGCTTTGTGAGGACGGGCGCGAACCAAACCAGCCTGACGTCTGCAGAGGCCACACGGTGCGAGCCAACGGCAG
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135331206 146 + 135778131 CAGGATTCCAGAACGAACCAGAAGCGTGTCTGATTCTGGTTTGACTCACACATGTGCTGGAAATCCCTGCAAGAGCTTTGTGAGGACGGGCGCGAACGAAACCAGCCTGACGTCTGCAGAGGCCACACAGTGCGAGCCAAGGGcag
i chlSab2.chr7                 C 0 C 0
s calJac3.chr3                 190444966 146 - 190850796 CAAGATTCCAGAACTAACCAGAAGTATGTCTGATTTGGGTTTTACTCACACATGTACTGGAAATCCATGCATAGTCTTTGTGAGAAAGGGCGCAAATGAGACCAGCCTGAAGCCTGCAGAGGCCACGCAGCACCAGGCAACAGCAA
i calJac3.chr3                 C 0 C 0
s canFam3.chr16                 17879586 144 -  59632846 CTGGATTCAAGAAATAACCAG-ATTGTGTCTGGCTTTAGTTTCATACACACATGTGTTAATAATCTCCACATAA-CTATGGGGTAAAGGGCACAGATAAAACCAGTCTGGGATCCTTAAAGGCTACAGAGTAAAGGTCAACAGCAG
i canFam3.chr16                C 0 I 2205
e mm10.chr8                     87584533 1735 - 129401213 I

a score=1436185.000000
s hg38.chr4_KI270925v1_alt        211427 486 +    555799  
s panTro4.chr4_GL389869_random     44357 510 -     69473  
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3869001 510 -  23176937  
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113771504 513 + 115148730  
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183589221 522 + 184069350  
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188972921 522 + 189454096  
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178396045 522 + 178775436  
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135331352 523 + 135778131  
i chlSab2.chr7                 C 0 I 4677
s calJac3.chr3                 190445112 522 - 190850796  
i calJac3.chr3                 C 0 C 0
e mm10.chr8                     87584533 1735 - 129401213 I
e canFam3.chr16                 17879730 2205 -  59632846 I

a score=2100.000000
s hg38.chr4_KI270925v1_alt        211913 1 +    555799 c
s panTro4.chr4_GL389869_random     44867 1 -     69473 c
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3869511 1 -  23176937 c
i ponAbe2.chr4_random          C 0 C 0
s rheMac3.chr5                 183589743 1 + 184069350 c
i rheMac3.chr5                 C 0 I 47
s macFas5.chr5                 188973443 1 + 189454096 c
i macFas5.chr5                 C 0 I 18
s papAnu2.chr5                 178396567 1 + 178775436 c
i papAnu2.chr5                 C 0 C 0
s calJac3.chr3                 190445634 1 - 190850796 c
i calJac3.chr3                 C 0 C 0
e mm10.chr8                     87584533 1735 - 129401213 I
e canFam3.chr16                 17879730 2205 -  59632846 I
e chlSab2.chr7                 135331875 4677 + 135778131 I
e nomLeu3.chr7b                113772017 0 + 115148730 C

a score=963.000000
s hg38.chr4_KI270925v1_alt        211914 36 +    555799 atgtgtgtgtgtgtatatatatatatatattttttt
s panTro4.chr4_GL389869_random     44868 36 -     69473 atgtgtacatatatatatatatatatatatatatat
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3869512 24 -  23176937 a------------tatacatatacatatatgtattt
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113772017 20 + 115148730 ----------------atagatagatatatatacac
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188973462 22 + 189454096 --------------acacacacacacacacacacac
i macFas5.chr5                 I 18 I 6
s papAnu2.chr5                 178396568 22 + 178775436 --------------acacacacacacacatatatac
i papAnu2.chr5                 C 0 I 1
s calJac3.chr3                 190445635  3 - 190850796 --------------------------ata-------
i calJac3.chr3                 C 0 C 0
e mm10.chr8                     87584533 1735 - 129401213 I
e canFam3.chr16                 17879730 2205 -  59632846 I
e chlSab2.chr7                 135331875 4677 + 135778131 I
e rheMac3.chr5                 183589744 47 + 184069350 I

a score=-778.000000
s hg38.chr4_KI270925v1_alt        211950 1 +    555799 t
s panTro4.chr4_GL389869_random     44904 1 -     69473 a
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3869536 1 -  23176937 t
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113772037 1 + 115148730 a
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183589791 1 + 184069350 C
i rheMac3.chr5                 I 47 C 0
s macFas5.chr5                 188973490 1 + 189454096 A
i macFas5.chr5                 I 6 C 0
e mm10.chr8                     87584533 1735 - 129401213 I
e canFam3.chr16                 17879730 2205 -  59632846 I
e calJac3.chr3                 190445638 0 - 190850796 C
e chlSab2.chr7                 135331875 4677 + 135778131 I
e papAnu2.chr5                 178396590 1 + 178775436 I

a score=802355.000000
s hg38.chr4_KI270925v1_alt        211951 319 +    555799 ttttttttttttttt------gaggagtcttgctctgtcgccaagatgggagtgcagtggtgcaatctcctctcactgcaacctctgcctcccaggttgaagcaattctcctgcctcagcctcccaagtagctagcactacaggcacctgccaccacgcccagctgatttttttttttt-tttttgtatttttagt-ggagacggggtttcattatgttggacaggctagtctcgagctcctgaccttgtgatctgcccgcctcggcttcccaaagtattgggattacaggtgggagccaccgcacctgcctagtcagattctacac
s panTro4.chr4_GL389869_random     44905 309 -     69473 tatttttttt-----------gaggagtcttgctctgtcgccaagatgggagtgcagtggtgcaatctcctctcactgcaacctctgcctcccaggttgaagcaattctcctgcctcagcctcccaagtagctagcactacaggcacccaccacaacgcccagctgattttttttttct------gtatttttagt-agagacggggtttcatcatgttggacaggctagtcttgagctcctgaccttgtgatctgcccgcctcagcctctcaaagtattgggattacaggtgtaagccacagtacctgcctagtcagattctacac
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3869537 312 -  23176937 ttttttttt------------gaggagtctcactctgtcaccaagattggagtgcagtggtgcaatctcctctcactgcaacctctgcctcccaggttgaagcaattctcctgcctcagcctcctgagtagatagcactacaggcacctgccaccacgcccagctgatttttttttttt--ttttgtatttttagt-agagacagggtttcatcatgttggacaggttggtctcgagctcctgaccttgtgatctgcccgcctcagcctcccaaagtactgggataaccggcgtaagccactgtgcctgcctagtcagattctacat
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113772038 306 + 115148730 ttttgttttt-----------gaagagtctcgctctgtcgccaagattggagtgcagtggtgcagtctcctctcactgcaacctctgcctcccaagttgaagcaattctcctgcctcagcctccggagtagc-agcactacaggcacctgccaccaggcccagctaatttgtttttt--------gtatttttagt-agagacggggtttcatcacattggccaggctggtctcgagctcctgaccttgtgatccgccggccttggcctcccacggtactgggattacaggcgtgagccaccgcgcctgcccagtcagattccacac
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183589792 311 + 184069350 tttttttttttcttt------gacgagtctcactctgtcgccaagattggagtgcagtggtgcaatctcctctcactgcaccctccgcctcccaggttgaagtgatactcctgcctcagcctcccaagtagctggcattacaggtgcccgccaccacgcccagctaattttttttt---------gtatttttagt-agagacggggtttcatcatgtcggccaggatgggctcgagcttccgacctggtgatctgcccacctcagcctcctaaagtactgggattacaggcatgagccaccgcgcctgcccagtcagattctacac
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188973491 311 + 189454096 Ctttttttttgtttt------gacgagtctcactctgtcgccaagattggagtgcagtggtgcaatctcctctcactgcaccctccgcctcccaggttgaagtgattctcctgcctcagcctcccaagtagctggcattacaggtgcccgccaccacgcccagctaattttttttt---------gtatttttagt-agagacggggtttcatcatgtcggccaggatggtctcgagcttctgacctggtgatctgcccacctcagcctcctaaagtactgggattacaggcatgagccaccgcgcctgcccagtcagattctacac
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178396591 308 + 178775436 ---tttttctttttt------gacgagtctcactctgtcgccaagattggagtgcagtggtgcaatctcctctcactgcaccctccgcctcccaggttgaagtgattctcctgccgcagcctcccaagtagctggcattacaggtgcccgccaccacgcccagctaattttttttt---------gtatttttagt-agaaacggggtttcatcatgtcggccaggatggtctcgagcttctgacctggtgatctgcccacctcagcctcctaaagtactgggattacaggcatgagccaccgcgcctgcccaGTCAGATTCTACAC
i papAnu2.chr5                 I 1 C 0
s chlSab2.chr7                 135336552 312 + 135778131 ttttttttttttttt------gacgtgtctcactctgttgccaagattggagtgcagtgctgcaatctcctctcactgtaccctccgcctcccaggttgaagcgattcttctgcctcagcctcccaagtagctggcattacaggtgcccgccaccacgcctcgctaattttttttt---------gtatttttagtcagagatggggtttcaccgtgttagccaggatggtctcgagctcctgacctggtgatctgcccgcctcggcctcccaaagtactgagatgacaggcatgagccaccgcacctgcccAGTcagattctacac
i chlSab2.chr7                 I 4677 C 0
s calJac3.chr3                 190445638 315 - 190850796 ttcttttttttttttgaggaggaagagtttcaccctgtcaccagggttagagtaaggtggtgtgatctccactcactgcaacctctgcctcctgggttcaattgattcttctgcctcagcttcccgagtagctgggactacaggagcataccaccactccaggctcattttttttttttttttttgcattttcagt------------ttcatcttgttggccaggctggtcttgagctcctgatctcgtgatccattcgcctcagcctcccaaagtgctggggttacaggtgcgcgtcaccacgcctggccagtcatattctacgc
i calJac3.chr3                 C 0 C 0
e mm10.chr8                     87584533 1735 - 129401213 I
e canFam3.chr16                 17879730 2205 -  59632846 I

a score=1126272.000000
s hg38.chr4_KI270925v1_alt        212270 391 +    555799 agaggaatgaagataaggatggccgtctagctctcatctcaaacaagggaagggaggagacagaggagcaaaatctctccag----gattgaaaggaaaaaagtcaacctaaaattctctaccagagaaaatatctttcaaagatcaaggtaaaatcgag--tttttcagacatataaacgaagaaataat---------------------------------tcgttaccagcagaacacaccacaagaaatgttGCAGATGGTGGATCCAGGAACACAGTTAGGACTGAATtgtcctcagggattattgaactagtg--tttatcttactcctaaacgaagtggttccagtgggctgtttttcttaatgtttcagtttatgtt-----cccaatgttataattttgtagttttcacaaaaccactaatagcctt
s panTro4.chr4_GL389869_random     45214 391 -     69473 agaggaatgaagataaggatggccatctatctctcatctcaaacaagggaagggaagagacagaggagcaaaatctctccag----gattgaaaggaaaaaagtcaacctaaaattctctaccagagaaaatatctttcaaagatcaaggtaaaatcgag--tttttcagacatataaatgaagaaataat---------------------------------tcgttaccagcagaacacaccacaagaaatgttGCAGATGGTGGATCCAGGAACATGGTTACGACTGAATtgtcctcagggattattgaactagtg--tttatcttactcctaaacgaagtggttccagtgggctgtttttcttaatgtttcagtttatgtt-----cccaatgttataattttgtagttttcacaaaaccactaatagcctt
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3869849 391 -  23176937 agaggaatgaagataaggatggccttctatctctcatctcaaacaaggcaagggaggagacagaggagcaaaatctctccag----gactgaaaggaaaaaagtcaacctaaaattctctaccagagaaaatatctttcaaagatcaaggtaaaatcgag--tttttcagacacataaatgaagaaataat---------------------------------tcgttaccagcagaacacaccacaagaaatgttgcagatgatggatccaggaaCACGGTTAGGACTGAATtgtcctcaggggttattgaactagtg--tttatcttactcctaaacgaagtggttccagtgggctgtttttcttaatgtttcagtttatgtt-----cacaatgttataattttgtagttttcacaaaaccactaatagcctt
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113772344 388 + 115148730 agaggaacgaagacaaggatggctgtctatctctcatcacaaacaaggcaagggaggagac--gggagcaaaatctctccgg----gaccgaaagg-aaaaagtcaacctaaaattctctaccagagaaaatatctttcaaagatcaaggtaaaatcgag--tttttcagacatataaatgaagaaataat---------------------------------tcattaccagcagaacacaccacaagaaatgttGCAGATGACGGATCCAGGAACACGGTTAGGACTGAATtgtcctcaggggttactgaactagtg--tttatcgtactcctataggaagtggttccagtgggctgtttttcttaatgtttctgtttatgtt-----cccaatgttataattttgtagttttcacaaaaccactaatagcctt
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183590103 421 + 184069350 agaggaacaaggataagtatggccatctgtctctcatcgcaagcaaggcaagggaggagacatatgggcaaaatctgtccag----gacagaacggaaaaaagtcaacctaaaattctctaccagtgaaaatacctttcaaagatcaaggtaaaatcaag--tttttcagacatataaatgaagaaataattcattaccagcaggacacaccacaggaaATAACTCATTACCAGCAGAACACAC--GAGGAAATGTTGTAGGTGATGGGTCCAGCAACATTGTTAGGACTG-ATtgtcctcaagggttactgaactagtg--tttatcttactcctaaacgaagtggttccagttggctgtttttcttaatgtttcagtttgtgtt-----cccaatgttataattttgtagttttcacaaaaccactaacagcctc
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188973802 421 + 189454096 agaggaacaaggataagtatggccatctgtctctcatcgcaagcaaggcaagggaggagacatacgggcaaaatctgtccag----gacagaatggaaaaaaatcaacctaaaattctctaccagtgaaaatacctttcaaagatcaaggtaaaatcaag--tttttcagacatataaatgaagaaataattcattaccagcaggacacaccacaggaaATAACTCATTACCAGCAGAACACAC--CAGGAAATGTTGTAGGTGATGGGTCCAGCAACATTGTTAGGACTG-ATtgtcctcaagggttactgaactagtg--tttatcttactcctaaacgaattggttccagttggctgttttccttaatgtttcagtttgtgtt-----cccaatgttataattttgtagttttcacaaaaccactaacagcctc
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178396899 421 + 178775436 AGAGGAACAAGGATAAGTATGGCCATCTGTCTCTCATTGCAAGCAAGGCAAGGGAGGAGACAGACGGGCAAAATCTGTCCAg----gacagaacagaaaaaaatcaacctaaAATTCTCTACCAGTGAAAATACCTTTCAAAGATCAAGGTAAAATCAAG--TTTTTCAGacatataaatgaagaaataattcattACCAGCAGGACACACCACAGGAAATAACTCATTACCAGCAGAACACAC--CAGGAAATGTTGTAGGTGATGGGTCCAGCAACATTGTTAGGACTG-ATTGTCCTCAAGGGTTACTGAACTAGTG--TTTATCTTACTCCTAAACGAAGTGGTTCCAGTTGGCtgtttttcttaatgtttcaGTTTGTGCT-----CCCAGTGttataattttgtagttttcacaaAACCACTAACAGCCTC
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135336864 388 + 135778131 agaggaacaaggataaggatggccgtctctctctcatcgcaagcaaggcaagggaggagacatacgggcaaaatctgtccag----gacagaagggaaaaaaatcaacctaaaattctctaccagtgaaaatacctttcaaagatcaaggtaaaatcaag--tttttcagacatataaatgaagaaataat---------------------------------tcattatcagcagaacccat--caggaaatgttgcaggTGACGGGTCCAGCAACATTGTTAGGACTG-ATtgtcctccagggttgctgaactagtg--tttatcttactcctaaacaaagtggttccagtgggctggttttcttaatgtttcagtttgtgtt-----cccaatgttataattttgtagttttcacaaaaccactaacagcctc
i chlSab2.chr7                 C 0 C 0
s calJac3.chr3                 190445953 386 - 190850796 ggaggattgaagataaggatggccgtctatctgtcattgcaaacaaggcaagggaggagacagaggagcaaaatctttcaag----gactgaaagg-aaaaaatcaacctaatattctctaccagtgaaaatatcttccaaggat-aaagtaaaatagag--tttttcagacacataaatgaagaaatcat---------------------------------tcattaccagcagaacttaccacgaggaatgttgaggATGATGGATCCA-CGCCACGGTCATGACCGAATGGTCCTCA-GGCTTGTTGAATTAATG--CTCGGCGTGCTCCTGAACCGAGT-CTTTCAGTAGGCTGTTCTCCTCACTGTTTGAGTTTACGTT-----CCCAATGTTGTAATTTCGTAGTTTTCACAAAACCACCAACAGCTTT
i calJac3.chr3                 C 0 I 25
s canFam3.chr16                 17881935 373 -  59632846 aaaggagtaaggacaaggcag-------agctttcattggaagc------tgcgagaagacactgaaccaaagtcttcaaagcattgaaagaaaagaaaaatatcaatgtaaaatctccatacagcgaaaatatccttcaaaactaaaggtaaaatacagactttttcagacatataaaaccagaggtcat---------------------------------ttattagtggcataccacactataagaaGAGTTTCAGGTGATTGACCAATGCACATTGTTAAGACAGAGTAGTCTTCAAGGTGTATTGAACTAATAACTTTATTTAACTCCTAAA-----TAGCCCCGATCAGCTAATATTTTTTGTTTTGTTGTTTTTTTTACATGCCTGATTCTACAATTTTGTCTTTGTCAGA-------------CTTT
i canFam3.chr16                I 2205 C 0
e mm10.chr8                     87584533 1735 - 129401213 I

a score=521495.000000
s hg38.chr4_KI270925v1_alt        212661 196 +    555799 tagccaccatttctcacacttaccactctccttttctgtaacagtccctcttttctgtcctaatttgctgcttataatcagtggccctagaaaccagat---------------------aaGAACATGTATTCGAAATGCGAATAAGTT-----AAAATAGCCCCATAAATTGTAATCCATAGATTTT----GTGTGATATACTTAGTCACTCAGAAGCTTTTTC---
s panTro4.chr4_GL389869_random     45605 194 -     69473 tagccaccatttctcacacttaccactctccttttctgtaacagtccctcttttctgtcctaatttgctgcttctaatcagtggccctagaaaccagat---------------------aaGAACATGTATTCGAAGTTCGAATAAGTT-----AAAATAGCCCCATAAATTGTA--CCATAGATTTT----GTGTGATATACTTAGTCACTCAGAAGCTTTTTC---
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3870240 196 -  23176937 tagccaccatttctcacacttaccgctctccttttctgtaacagtccctcttttctgtcctaatttgctgcttctaatcagtggccctagaaaccagat---------------------aaGAACATGTATTCGAAATGCGAATAAGTT-----AAAATAGCCCCATAAATTGTAATCCATAGATTTT----GTGTGATATACTTAGTCGTTCAGAAGCTTTTTC---
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113772732 195 + 115148730 tagccaccatttctcacactca-cactctcctttcctgtaacagtccctcttttctgtcctaatttgctgcttctaatcagtggccccagaaaccggat---------------------aaGAACATGTATTCGAAATGCAAGTAAGTT-----AAAATAGCCCCATAAATTGTAATCCATAGATTTT----GTGTGATATACTTAGTCACTCAGAAGCTTTCTC---
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183590524 201 + 184069350 tagccaccatttctcacacttatcactctcctcttctgtaacagtccctcttttctgtcctaatttgctgcttctaatcagtggtcctagaaaccagat---------------------aaGAACATGTATTCAAAATGCAAATAAATTAAGTCAAAATAGCCCCACAAATTGCAATCCATAGATTTT----GTGTGATATACTTAGTCACTCAGAAGCTTTTTC---
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188974223 201 + 189454096 tagccaccatttctcacacttaccactctcctcttctgtaacagtccctcttttctgtcctaatttgctgcttctaatcagtggtcctagaaaccagat---------------------aaGAACATGTATTCAAAATGCAAATAAATTAAGTCAAAATAGCCCCATAAATTGCAATCCATAGATTTT----GTGTGATATACTCAGTCACTCAGAAGCTTTTTC---
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178397320 201 + 178775436 TAGCCACCATTTCTCACACTTACCACTCTCCTCTTCTGTAACAGTCCCTCTTTTCTGTCCTAATTTGCTGCTTCTAATCAGTGGTCCTAGAAACCAGAT---------------------AAGAACATGTATTCAAAATGCAAATAAGTTAAGTCAAAATAGCCCCATAAATTGCAATCCATAGATTTT----GTGTGATATACTTAGTCACTCAGAAGCTTTTTC---
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135337252 201 + 135778131 tagccaccatttctcacacttaccactctccttttctgtaacagtccatgttttctgtcctaatttgctgcttctaatcagtggtcctagaaaccagat---------------------aaGAACATGTATTCAAAATGCAAATAAGTTAAGTCAAAATAGCCCCATAAATTGCAATCCATAGATTTT----GTGTGATATACTTAGTCACTCAGAAGCTTTTTC---
i chlSab2.chr7                 C 0 C 0
s canFam3.chr16                 17882308 227 -  59632846 CAACTCTCAATTCTCACAATTATCAC-CTGTTTTTTTCTACAAGTCTTTCTTTTGTATCCTAATTTGTGGCTTCTAGTCAGGGAACTTAGAAACTACATAAGGAAATGTATTTTTTTTAAAAGAAAATGTATTAGAATTGTGAATAAATGAAGCTAAAACAGCCTCATGAACTTTATGTCATTTATTTGTACAATACAATACACTTA-TCACTCAAAAGCATTTATCCC
i canFam3.chr16                C 0 C 0
e mm10.chr8                     87584533 1735 - 129401213 I
e calJac3.chr3                 190446339  25 - 190850796 I

a score=505154.000000
s hg38.chr4_KI270925v1_alt        212857 153 +    555799 -CCAGTCTATATTCTGAAAAATGTGATATAACAATTATTATAAGGAAAACTATTACATACTGAATGGCCACTGTGTGTTAGTCATTATTCTAAATATTT--CATTTATTATTTGTAATCTTTTTCATG----GACTCTAGATTCTACTTCCAGAGTATAT
s panTro4.chr4_GL389869_random     45799 153 -     69473 -CCAATCTATATTCTGAAAAATATGATATAACAATTATTATAAGGAAAACTATTACATACTGAATGGCCACTGTGTGTTAGTCATTATTCTAAATATTT--CATTTATTATTTGTAATCTTTTTTATG----GACTCTAGATTCTACTTCCAGAGTATAT
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3870436 157 -  23176937 -CCAATCTATATTCTGAAAAATATGATATAACAATTATTATAAGGAAAACTATTACATACTGAATGGCCACTGTGTGTTAGTCATTATTCTAAATATTT--CATTTATTATTTGTAATCTTTTTCATGTATATACTCTAGAACCTACTTCTAGAGTATAT
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113772927 153 + 115148730 -CCAATCTATATTCTGAAAAACACGATATAACAATTATTATAAGGAAAACTATTACGTACTGAATGGCTACTGTATGTTAGTCATTATTCTAAATATTT--CATTTATTATTTGTAATCTTTTTCATG----GACTCTAGATTCTACTTCCAGAGTATAT
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183590725 155 + 184069350 -CCAATCTATATTCTGAAAAATATGATGTAACAATTATTGTAAGGAAAACTATGGAATACTGAATGGCCGCTGTGTGTTAGTCATTATTCTAAATATTTCACATTTATTATTTTTAATCTTTTTCATG----GACTCTAGATTCTACTTCCAGAGTTTAT
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188974424 155 + 189454096 -CCAATCTATATTCTGAAAAATATGATGTAACAATTATTGTAAGGAAAACTATGGAATACTGAATGGCCGCTGTGTGTTAGTCATTATTCTAAATATTTCACATTTATTATTTTTAATCTTTTTCATG----GACTCTAGATTCTACTTCCAGAGTTTAT
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178397521 155 + 178775436 -CCAATCTATATTCTGAAAAATATGATGTAACAATTATTGTAAGGAAAACTATGGAATACTGAATGGCCACTGTGTGTTAGtcattattctaaatatttcacatttattatttttaatctttttcatg----GACTCTGGATTCTACTTCCAGagtttat
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135337453 155 + 135778131 -CCAATCTATATTCTGAAAAATATAATGTAACAATTATTGTAAGGAAAACTATGGAATACTGAATGGCCACTGTGTGTTAGTCATTATTCTAAATATTTCACATTTATTATTTTTAATCTTTTTCATG----GACTCTAGATTCTACTTCCAGAGTTTAT
i chlSab2.chr7                 C 0 C 0
s calJac3.chr3                 190446364 151 - 190850796 -CCAATCTATATTCTGAAAAATGTCATGTGACAATTATTATAAGGAAAACTGT----TACTGAATGCCCAGGGTGTGTTAGTCATTATTCTAAATATTTCACATTTGTGATTTTTAATATTTTTCATG----GACTCTAGATTCTGCTTCCAGAGTATAT
i calJac3.chr3                 I 25 C 0
s canFam3.chr16                 17882535 152 -  59632846 CCAGATACATACTGGAAAAAAAGTAATATAACAATTATTATAAGGaaaactactacatattgaatgtccagtgtatgctagtcctcattctaaattcttcacatatattttttctaatcttttccatc----accttttga----ACTTCCAGAATCTGT
i canFam3.chr16                C 0 I 37
e mm10.chr8                     87584533 1735 - 129401213 I

a score=55655.000000
s hg38.chr4_KI270925v1_alt        213010 23 +    555799 AA-TGTGTATATAAAGAGACAGAA
s panTro4.chr4_GL389869_random     45952 12 -     69473 AA------------AGAGGCAGAA
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3870593 23 -  23176937 AA-TGTATATATAAAGAGACAGAA
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113773080 23 + 115148730 AA-TGTATATATAAAGAGACAGAA
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183590880 23 + 184069350 AA-TGTATATATAAAGAGACAGAA
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188974579 23 + 189454096 AA-TGTATATATAAAGAGACAGAA
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178397676 23 + 178775436 aa-tgtatatataaagagacAGAA
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135337608 23 + 135778131 AA-TGTATATATAAAGAGACAGAA
i chlSab2.chr7                 C 0 C 0
s calJac3.chr3                 190446515 24 - 190850796 AAGTGTATATATAAAGAGGGAGAA
i calJac3.chr3                 C 0 C 0
e mm10.chr8                     87584533 1735 - 129401213 I
e canFam3.chr16                 17882687 37 -  59632846 I

a score=678575.000000
s hg38.chr4_KI270925v1_alt        213033 309 +    555799 TGATAAAGTGttttttttttc----tttttttgttttttgagatggagtctcactctgccaccaggccggagtgtagcggcatgatctcagctcactgcaacctccaccttcctggttcaagcgattctcctgcctcaacctcccaagtagctgggactacaggtgcacaccaccatgcccagctaatttttgtatttttagtagagacggggttttaccatgttggccaggatggtcttgatctcttgacctcgcgatccacctgcgtcggcctcccaaagtgctgggattacaggagtgagccaccatgcc
s panTro4.chr4_GL389869_random     45964 307 -     69473 TGATAAAGTGttttttttttc----ttttt--gttttttgagatggagtctcgctctgccaccaggctggagtgtagcagcatgatctcagctcactgcaacctccaccttcctggttcaagcgattctcctgcctcaacctcccaagtagctgggactacaggtgaacaccaccatgtccagctaatttttgtatttttagtagagacggggttttaccatgttggccaggatggtcttgatctcttgaccttgcgatccacctgcgtcggcctcccaaagtgctgggattacaggagtgagccaccatgcc
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3870616 311 -  23176937 CGATAAAGTGGtttttttttt--cgtttttttgttttttgagatggagtctcgctctgccaccaggctggagtgtagtggcgtgatctcagctcacttcaacctccaccttcctggttcaagcgattcttctgcctcaacttcccaagtagctgggactacaggtgcacaccaccatgcccagctaatttttgtatttttagtagagacggggtttcaccatgttggccaggatggtcttgatctcttgacctcatgatccacccgtgttggcctcccaaagtgctgggattacaggcgtgagccaccatgcc
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113773103 312 + 115148730 TAATAAAGTGGtttttttgttgttgttgttttgttttttgagatggagtcttgctctgctaccaggctggagtgtagtggtgtgatctcagctcaaggcaacctccaccttcctggttcaagtgattctcctgcctcaacctcccaagtagctgggactacaggtgcacactaccatgcccagctaatttttgtatttttagtagagac-gggtttcaccatgttggccaggacggtcttgatatcttgacctcacgatccacgtgcgtcggcctcccaaactgctgggattacaggcgtgagccaccgtgcc
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183590903 312 + 184069350 TGATAAAGTGGtttttttgttgttgttgttttgttttttgagatggagtctcactctgtcaccaggctggagtgcagtggcgcgatctcggctcactgcaagctccagcttcctggttcaagcgattctcccacctcaacct-ccaagtagctgggactacaggtattcaccgccatgcccagctaatttttgtatttttagtagagacagggtttcactatgctggccaggatggtcttgatctcttgacctcacgatttgcctgccacaggctcccaaagggcggggattacatgtgtgagccaccgtgcc
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188974602 309 + 189454096 TGATAAAGTGGttttt---ttgttgttgttttgttttttgagatggagtctcactctgtcaccaggctggagtgcagtggcacaatctcggctcactgcaagctccaccttcctggttcaagcgattctcccacctcaacct-ccaagtagctgggactacaggtatgcaccaccatgcccaactaatttttgtatttttagtagagacagggtttcactatgctggccaggatggtcttgatctcttgacctcacgatttgcctgccacaggctcccaaagggcggggattacatgtgtgagccaccgtgcc
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178397699 312 + 178775436 TGataaagtggtttttttgttgttgttgttttgttttttgagatggagtctcactctgtcaccaggctggagtgcagtggcgtgatctcggctgactgcaagctccaccttcctggttcaagcgattctcccacctcaacct-ccaagtagctgggactacaggtatgcaccaccacgcccagctaatttttgtatttttagtagagacagggtttcactatgctggccaggatggtcttgatctcttgacctcgcgatctgcctgcCACAGGCTCCCAAAGGGcggggattacatgtgtgagccaccgtgcc
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135337631 312 + 135778131 TGATAAAGTGGtttttttgttgttgttgttttgttttttgagatggagtcttgctctgtcaccaggctggagtgcagtggcgccatctcggctcactgcaagctccaccttcctggttcaagcgattctcccacttcaacct-ccaagtagctgggactacagttgtgcaccaccatgcccagctaatttttgtatttttagtagagacagggtttcactatgctggccagcatggtcttgatctcttgaccttgcgatctgcctgccgcagcctcccaaagggcggggattacatgtgtgagccaccgcgcc
i chlSab2.chr7                 C 0 C 0
e mm10.chr8                     87584533 1735 - 129401213 I
e canFam3.chr16                 17882687  37 -  59632846 I
e calJac3.chr3                 190446539   0 - 190850796 C

a score=12364.000000
s hg38.chr4_KI270925v1_alt        213342 4 +    555799 cagc
s panTro4.chr4_GL389869_random     46271 4 -     69473 cagc
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3870927 4 -  23176937 cagc
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113773415 4 + 115148730 cagc
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183591215 4 + 184069350 cagc
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188974911 4 + 189454096 cagc
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178398011 4 + 178775436 cagc
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135337943 4 + 135778131 cagc
i chlSab2.chr7                 C 0 C 0
s mm10.chr8                     87586268 4 - 129401213 CAGA
i mm10.chr8                    I 1735 C 0
e canFam3.chr16                 17882687 37 -  59632846 I
e calJac3.chr3                 190446539 0 - 190850796 C

a score=205135.000000
s hg38.chr4_KI270925v1_alt        213346 61 +    555799 TGGTAAAGTGTTTTAAAGTACCAGCTTTGAACACAGACATCTCTGGTTAAAAATCACGGCT
s panTro4.chr4_GL389869_random     46275 61 -     69473 TGGTAAATTGTTTTAAAGTACCAGCTTTGAACACAGACATCTCTGGTTAAAAATCACGGCT
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3870931 61 -  23176937 tGGTAAAGTGTTTTAAAGTACCAGCTTTGAACACAGATATCTCTGGTTAAAAATCACAGCT
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113773419 61 + 115148730 cGGTAAAGTGTTTTAAAGTACCAGCTTTGAACACAGATATCTCTGGTTAAAAATCACGGCT
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183591219 60 + 184069350 TGGTAAAGTGTTTTAAAGTAACAGCTTTGAACACAGGTATCTCTGGTT-AAAATCACGGCT
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188974915 60 + 189454096 TGGTAAAGTGTTTTAAAGTATCAGCTTTGAACACAGGTATCTCTGGTT-AAAATCACGGCT
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178398015 60 + 178775436 tggtaAAGTGTTTTAAAGTATCAGCTTTGAACACAGGTATCTCTGGTT-AAAATCATGGCT
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135337947 60 + 135778131 TGGTAAAGTGTTTTAAAGTATCACCTTTGAACACAGGTATCTCTAGTT-AAAATCATGGCT
i chlSab2.chr7                 C 0 C 0
s calJac3.chr3                 190446539 61 - 190850796 TGGTAAAGTGTTTTAAAGTACGAGCTTTGAACTCAGGCATCTCTGGTTAAAAATCACAGCT
i calJac3.chr3                 C 0 I 308
s mm10.chr8                     87586272 58 - 129401213 TGGTAACCGGCTTTACAAAACCAAAACTGAGT-CAGAAATACCATACT--GAATCACAGCT
i mm10.chr8                    C 0 I 1
s canFam3.chr16                 17882724 60 -  59632846 TGGTAAGGTACGTTACAGTATCAGCTTTGAATCCAGATATCCCAAACA-AAAAGCTCAGCT
i canFam3.chr16                I 37 C 0

a score=2552.000000
s hg38.chr4_KI270925v1_alt        213407 1 +    555799 G
s panTro4.chr4_GL389869_random     46336 1 -     69473 G
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3870992 1 -  23176937 G
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113773480 1 + 115148730 G
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183591279 1 + 184069350 G
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188974975 1 + 189454096 G
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178398075 1 + 178775436 G
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135338007 1 + 135778131 G
i chlSab2.chr7                 C 0 C 0
s canFam3.chr16                 17882784 1 -  59632846 A
i canFam3.chr16                C 0 C 0
e mm10.chr8                     87586330 1 - 129401213 I
e calJac3.chr3                 190446600 308 - 190850796 I

a score=3665203.000000
s hg38.chr4_KI270925v1_alt        213408 1073 +    555799  
s panTro4.chr4_GL389869_random     46337 1066 -     69473  
i panTro4.chr4_GL389869_random C 0 I 3
s ponAbe2.chr4_random            3870993 1075 -  23176937  
i ponAbe2.chr4_random          C 0 I 3
s nomLeu3.chr7b                113773481 1078 + 115148730  
i nomLeu3.chr7b                C 0 I 3
s rheMac3.chr5                 183591280 1063 + 184069350  
i rheMac3.chr5                 C 0 I 3
s macFas5.chr5                 188974976 1064 + 189454096  
i macFas5.chr5                 C 0 I 3
s papAnu2.chr5                 178398076 1064 + 178775436  
i papAnu2.chr5                 C 0 I 3
s chlSab2.chr7                 135338008 1059 + 135778131  
i chlSab2.chr7                 C 0 I 3
s calJac3.chr3                 190446908 1024 - 190850796  
i calJac3.chr3                 I 308 I 1373
s mm10.chr8                     87586331  945 - 129401213  
i mm10.chr8                    I 1 C 0
s canFam3.chr16                 17882785 1201 -  59632846  
i canFam3.chr16                C 0 C 0

a score=1203583.000000
s hg38.chr4_KI270925v1_alt        214481 394 +    555799 ataccgattcccacatctgtcttgtaccttcctttttctcttcttctgtctttgtgtttttctctattgatctgttatcacgctctattcttttttctctctccttttctcttttcttccatttctttg-gcccttagcacttctttttttctatccttcattctttttactacttttcacatAATATAGAATT-AAGTCCAGATGTTGTATTC-----ACCATGTTTTAGTGTCCTACTCTTCTGAAA-----ATTGGAGCAAACGAAAAGGTTTGCCCATGTCTGAAAAATTAAGCAGTTTTTCATGTGG----CCTATGATG-CTTTTCT----------TTACAGTCAATGGGCACTTTATGAGG-AAGCACAAATACAAAGCTGCTTTTCATTCAGGGCC-CCCAGAAAGTCAAGACT
s panTro4.chr4_GL389869_random     47406 394 -     69473 ATACCAATTCCCACATCTGACTTGTAccttcctttttctcttcttctgtctttgtgtttttctctattgatctgttatcactctctattcttttttctctctccttttctcttttcttccatttctttg-gcccttagcacttctttttttctatccttcattctttttACTACTTTTCACATAATATAGAATT-AAGTCTAGATGTTGTATTC-----ATCATGTTTTAGTGTCCTACTCTTCTGAAA-----ATTGGAGCAAACAAAAAGGTTTGCCCATGTCTGAAAAATTAAGCAGTTTTTCATGTGG----CCCATGATG-CTTTTCT----------TTACAGTCAATGGGCACTTTATGAGG-AAGCACAAATACAAAGCTGCTTTTCATTCAGGGCC-CCAAGAAAGTCAAGACT
i panTro4.chr4_GL389869_random I 3 C 0
s ponAbe2.chr4_random            3872071 393 -  23176937 ATACCGATTCCCACATCTGTCTTGTAccttcctttttctcttctcctgtctttgtgtttttctctattgatctgtcatcacactctattcttttttctctctccttttctcttttcttccatttctttt-gcccttagcacttctttttttctatccttcattctttttACTACTTTTGCCATAATATAGAATT-AAGTCTAGATGTTTTATTC-----ATCATGTTTTAGTGTCCTACTCTTCTGAAA-----ATTGGAGCAAATGAAAAGGTTTGCCCATGTCTGAAAAATTAAGCAGTTTTTCATGTGG----CCCGTGATG-CTTTTCT----------TTAGAGTCAATGGGCCTTTTATGAGG-AAGCACAAATACAAAGCTGC-TTTCATTCAGGGTC-CCCAGAAAGTCAAGACT
i ponAbe2.chr4_random          I 3 C 0
s nomLeu3.chr7b                113774562 389 + 115148730 ACACTGATTCCCACATCTGTCTTGTACCTTCCTTTTTCTCTT---CTGTCTTTATGTTTTTCTCTATTGATCTGTCATCATGCTCTATTCTTTTTTCTCTCTCCTTTTCTCTTTTCTTCCATTTCTTTT-GCCCTTAGCACT--TTTTTTTCTATCCTTCATTCTTTTTACTACTTTTCGCATCATATAGAATT-AAGTCTAGATGTTGTATTC-----ATCATGTTTTAGTGTCCTACTCTTCTGAAA-----ATTGGAGCAAATGAAAAGGTTTGCCCATGTCTGAAAAATTAAGTAGTTTTTCATGTGG----CCTGTGATG-CTTTTCT----------TTAGAGTCAATGAACCCTTTATGAGG-AAGCACAAATACAAAGCTGCTTTTCATTCAGGGCC-CCCAGAAAGTCAAGACT
i nomLeu3.chr7b                I 3 C 0
s rheMac3.chr5                 183592346 394 + 184069350 ACACCCATTCCCACGTCTGTCCTGTACCTTCCGttttctctgcttctgtctctatgttttcctctattgctctgtcatcacgctctattcttttttctctctccttttctcttttcttccatttctttt-gcccttaccactt-cctttttctatccttcattcttttcactacttttcACATAACATAGAAGT-AAGTCTCGATGTTGTATTC-----ATCATGTTTTCATGTCCTACTCTTTTGAAA-----ATTGAAGCAAATAAAAAGGTTTGCCCATGTCTGAAAAATTAAGCAGTTTTTCCTGTGG----CCCGTGATG-CTTTTCT----------TTAGAGCCAATGGGCCCTTTATGAGGAAAGCATAAATACAAATCTGCTTTTCGCTCAGGGCC-CCCAGAAAGTCAAGACT
i rheMac3.chr5                 I 3 C 0
s macFas5.chr5                 188976043 394 + 189454096 acacccattcccacgtctgtcctgtaccttccgttttctctgcttctgtctctatgttttcctctattgctctgtcatcacgctctattcttttttctctctccttttctcttttcttccatttctttt-gcccttaccactt-cctttttctatccttcattcttttcactactttTCACATAACATAGAAGT-AAGTCTCGATGTTGTATTC-----ATCATGTTTTCCTGTCCTACTCTTTTGAAA-----ATTGAAGCAAATAAAAAGGTTTGCCCATGTCTGAAAAATTAAGCAGTTTTTCCTGTGG----CCCGTGATG-CTTTTCT----------TTAGAGCCAATGGGCCCTTTATGAGGAAAGCATAAATACAAATCTGCTTTTCGCTCAGGGCC-CCCAGAAAGTCAAGACT
i macFas5.chr5                 I 3 C 0
s papAnu2.chr5                 178399143 392 + 178775436 ACACCCATTCCCACGTCTGTCCTGtaccttcctttttctctgcttctgtctc--tgttttcctctattgctctgtcatcacgctctattcttttttctctctccttttctcttttcttccatttctttt-gcccttaccactt-cctttttctatccttcattcttttcactacttttcACATAACATAGAAGT-AAGTCTCGATGTTGTATTC-----ATCATGTTTTCATGTCCTACTCTTTTGAAA-----ATTGAAGCAAATAAAAAGGTTTGCCCATGTCTGAAAAATTAAGCAGTTTTTCCTGTGG----CCCGTGATG-CTTTTCT----------TTAGAGCCAATGGGCCCTTTATGAGGAAAGCATAAATACAAATCTGCTTTTCGCTCAGGGCC-CCCAGAAAGTCAAGAct
i papAnu2.chr5                 I 3 C 0
s chlSab2.chr7                 135339070 392 + 135778131 acacccattcccacatttgtcctgtaccttcctttttctctgcttccgtctc--tgtttttctctatcgctctgtcatcacgctctattcttttttctctctccttttctcttttcttccatttctttt-gcccttaccactt-cctttttctatccttcattcttttcactactttTCACATAACATAGAAGT-AAGTCTCGATGTTGTATTC-----ATCATGTTTTCGTGTCCTACTCTTTTGAAA-----ATTGAAGCAAATTAAAAGGTTTGCCCATGTCTGAAAAAATAAGCAGTTTTTCCTGTGG----CCTGTGATG-CTTTTCT----------TTAGAGCCAATGGGCCCTTTATGAGGAAAGCATAAATACAAAGCTGCTTTTCGCTCAGGGCC-CCCAGAAAGTCAAGACT
i chlSab2.chr7                 I 3 C 0
s calJac3.chr3                 190449305 371 - 190850796 ACACCTGTTTCCACATCTG----------TCCTTTTTCTCTT---CTGTCTT-GTGTTTTTCTGTATTGACCTGTCATCACGCTCTATTCCTttt--tctttccttttctcttttcttccatttcttct-gcccttaccactt-cttttccctatcctttactcttttcACT----------TAACATCGAATT-AAGTCTGGATGTTATATTCATTGAATTATGTTTTAGTGTCCTACTCTTTTAAAA-----ATTGGAGCAAATGAAAAAGTTTGCCCATGTCTG-AGAATGAAGCAGTTTTTCATGTGA----CCCTGGATG-CTTTTCT----------CTAGAGTCAATGGGCCTTTTAGGAGG-AAGCACAAATCTGAAGCTGCTTTTCATTCAGGGGC-CCCAGAAAGCCAAGACT
i calJac3.chr3                 I 1373 C 0
s mm10.chr8                     87587276 364 - 129401213 --GTTGTTTCCCTCTACTAAC----ATCTTATCTCTCCTCTTCTTCTATTCTTGGGTCTGTCTGTGAGTCTCTCT----GCATTTCTTTCTTTTTCTTTTGTCTGAATGTCCTTCCTTCCAT---------------CCATTT-CACTCTTCTCTTCTTTATTCTCCCCACTGATCTTTG-GCACTACAGAATT-TA-TCTAGCTATTGTATCAGCTGAATTTTGTTTTAGTGCTCtattttttaaaaaaaaatattaGACACAATAAAAAACTTT-TCCATTTCTTGAGAATTAAACCATTTTCCATGCGG----CTTTTGATATCGTTTCC----------CTTGAG-------------TAGTAGG-AACCACAAAACTGCAGCTCCTTTTTCTTCAAGGTCATCCAGAAAATTGAGTC-
i mm10.chr8                    C 0 C 0
s canFam3.chr16                 17883986 359 -  59632846 ------------------GTCATGTTCCTGCACTTGTAT----------------------CTCTATTCATCTGT-----------ACCAGttcccctttttccccttctcttttcttccactttttttctcccttttcccttatctttcctttcctttcattcttttcactatccttTATATAATATAAAATTCAAGTCTAGTCATTGTATTTGTTGAATTATATTTTG--GTCCTACTCTTTCAAAC-----ACTGAGATAAATAAAAACTTTTAT--ATGCCATAAGAATTAAGCAGTTTTCCAGAGGGGTAttttgttttg-tttttgtttttgtttGCTTTGAGTCAGCAAGCCATGTATTAGG--ACCAAAAATATGAAGCTGTTTTTTATTCAGGGTC-CCTAGAGAATCAAGATT
i canFam3.chr16                C 0 I 18

a score=119779.000000
s hg38.chr4_KI270925v1_alt        214875 42 +    555799 AGTtgtattagtc-----cattctcatgctgctaataaacacatact
s panTro4.chr4_GL389869_random     47800 42 -     69473 AGTtgtattagtc-----cattctcatgctgctaataaacacgtact
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3872464 33 -  23176937 AGTtgtattagtc-----cattctcatgctgctaataa---------
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113774951 42 + 115148730 AGTtgtattagtc-----cgttctcatgctgctaataaagacagact
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183592740 42 + 184069350 AGTtgtattagtc-----cattctcatgcggctaataaagacttact
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188976437 42 + 189454096 AGTtgtattagtc-----cattctcatgcggctaataaagacttact
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178399535 42 + 178775436 agttgtattagtc-----cattctcatgctgctaataaagacttact
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135339462 42 + 135778131 AGTtgtattagtc-----cattctcatgctgctaataaagacttact
i chlSab2.chr7                 C 0 C 0
s calJac3.chr3                 190449676 42 - 190850796 AGTtgtattagtt-----cattctcatgctgctaataaagacatacc
i calJac3.chr3                 C 0 I 2594
s mm10.chr8                     87587640 45 - 129401213 --TTGGCTTAGTCTTAATTGCTATCAATATGCTTTTCAACACTTACT
i mm10.chr8                    C 0 I 2163
e canFam3.chr16                 17884345 18 -  59632846 I

a score=625433.000000
s hg38.chr4_KI270925v1_alt        214917 224 +    555799 agagacagggtaatttagaaagaaaagagatttaattgactcatagttcctcaggactggggaggattccggaaacttactatcatgacaaaaggggaagcaaacacttccttcttcacatggtggcaggaaggggaagtgctgagcaaaaggggaaaagccccttacgaaaccatcagatctca-gaaaacgtactcactatcacaagaagagtagcatggggg
s panTro4.chr4_GL389869_random     47842 225 -     69473 agagacagggtaatttagaaagaaaagagatttaatagactcatagttcctcaggactggggaggattccggaaatttactatcatgacaaaaggggaagcaaacacttccttcttcacatggtggcaggaaggggaagtgctgagcaaaaggggaaaagccccttacaaaaccatcagatctcatgaaaacgtactcactgtcacaagaagagtagcatggggg
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3872497 223 -  23176937 --agacagggtaatttagaaagaaaagagatttaattgactcacagttcctcagggctggggaggcttccagaaacttactatcatgacaaaaggggaagcaaacacttccttcttcacatggtggcaggaaggggaagtgctgagcaaaaggggaaaagccgcttataaaaccatcagatctcatgaaaacgtactcactatcacaagaacagtagcatggggg
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113774993 223 + 115148730 agagaaagggtaatttagaaagaaaagagatttaattgactcatagtttctcagggctggagaggcctccggaaacttactatcatgacaaaaggggaagcaaatg--tccttcttcacatggtggcaggaaggggaagtgctgagcaaaaggggaaaagccccttataaaaccatcagatctcaagaaaacgtactcactatcacaagaacagtagcatggggg
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183592782 225 + 184069350 agagacagggtcatttagaaagaaaagagattcaactgactcatagttcctcagggctggggaggcctctggaaacttatgatcgtggcaaaaggggaagcaaacacttccttcttcacatggcggcaggaaggggaaggggtgagcaaaaggggaaaagccccttataaaaccatcagttttcacgaaaacatactcactaccacaagaacagtagcatggggg
i rheMac3.chr5                 C 0 I 14
s macFas5.chr5                 188976479 225 + 189454096 agagacagggtcatttagaaagaaaagagattcaactgactcatagttcctcagggctggggaggcctctggaaacttacgatcgtggcaaaaggggaagcaaacacttccttcttcacatggcggcaggaaggggaagtgatgagcaaaaggggaaaagccccttataaaaccatcagttttcacgaaaacatactcactaccacaagaacagtagcatggggg
i macFas5.chr5                 C 0 I 1
s papAnu2.chr5                 178399577 225 + 178775436 agagacagggtcatttagaaagaaaagagattcaaCTGACTCATAGTTcctcagggctggggaggcctctggaaacttacgATCGTggcaaaaggggaagcaaacacttccttcttcacatggcggcaggaaggGGAAGTGatgagcaaaaggggaaaagccccttataaaaccatcagttttCACGAAAACgtactcactaccacaagaacagtagcATGGGGG
i papAnu2.chr5                 C 0 I 5
s chlSab2.chr7                 135339504 225 + 135778131 agagacagggtcatttagaaagaaaagagattcaactgactcatagttcctcagggctggggaggcctctggaaacttactaccgaggcaaaaggggaagtaagcacttccttcttcacatggtggcaggaaggggaagtgatgagcaaaaggggaaaagccacttataaaaccatcagttttcatgaaaacgtactcacgatcacaagaacagtagcatgggga
i chlSab2.chr7                 C 0 I 5
s calJac3.chr3                 190452312 220 - 190850796 Agagacagggtaatttctaaaggaaagagggttaactgacacatagttcctcagggctaaagaggcctcagggtacttgctgtcac----aaagcagaagaaagttcgtccttcttcacacgggggcaggaaggagaagtgc-aagcaaaaggggaaaagccccttttaaaaccatcagatctcatgaaaactcatgcatgattacaagaacagtagcaaggggg
i calJac3.chr3                 I 2594 C 0
e mm10.chr8                     87587685 2163 - 129401213 I
e canFam3.chr16                 17884345  18 -  59632846 I

a score=8611.000000
s hg38.chr4_KI270925v1_alt        215141 9 +    555799 tgaccacac
s panTro4.chr4_GL389869_random     48067 9 -     69473 taaccatgc
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3872720 9 -  23176937 taaccaccc
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113775216 9 + 115148730 taagcaccg
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188976705 9 + 189454096 tgggtacgc
i macFas5.chr5                 I 1 I 4
s papAnu2.chr5                 178399807 9 + 178775436 TAAGCAACC
i papAnu2.chr5                 I 5 C 0
s chlSab2.chr7                 135339734 9 + 135778131 taagcaacc
i chlSab2.chr7                 I 5 C 0
s calJac3.chr3                 190452532 9 - 190850796 tgaccaccc
i calJac3.chr3                 C 0 C 0
e mm10.chr8                     87587685 2163 - 129401213 I
e canFam3.chr16                 17884345 18 -  59632846 I
e rheMac3.chr5                 183593007 14 + 184069350 I

a score=305446.000000
s hg38.chr4_KI270925v1_alt        215150 129 +    555799 ccacgattcgattacctcccaccaggtcacttccacaacacctggggattgtgggaactacaattcaagatgagatttggatggggacacagagccaaaccatatcaCTAATCTTAGTCTCAATTTTCC
s panTro4.chr4_GL389869_random     48076 129 -     69473 ccatgattcaattacctccaaccaggtcacttccacaacccctggggattgtgggaactacaattcaagatgagatttggatggggacacagagccaaaccatatcaCTAATCTTAGTCTCAATTTTCC
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3872729 127 -  23176937 ccatgattcaattacctcc-accaggtcacttccacaacacggggggattgtgggaactacaa-tcaagatgagatttggatggggacacagagccaaaccatatcaCTAATCTTAGTCTCAATTTTGC
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113775225 129 + 115148730 ccatgattcaattacctcccaccaggtcacttccacaacacatggggactgtgggaactacaattcaagatgagatttggatggggacacagagccaaaccatatcaCCAATCTTAGTCTCAATTTTGC
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183593021 116 + 184069350 ccgtgattcaattccctcccactgggtcacct-----------ggggactgtgggaactacaattcaagaggagatttggatggggacacacagccaaaccatatcaCTAATCTCAGTCTCAA--TTGC
i rheMac3.chr5                 I 14 C 0
s macFas5.chr5                 188976718 116 + 189454096 ccgtgattcaattccctcccactgggtcacct-----------ggggactgtgggaactacaattcaagaggagatttggatggggacacacagccaaaccatatcaCTAATCTCAGTCTCAA--TTGC
i macFas5.chr5                 I 4 C 0
s papAnu2.chr5                 178399816 116 + 178775436 CCGTGATTCAATTCCCTCCCACTGGGTCACCT-----------GGGGActgtgggaactacaattcaagaggagatttggatggggacacacagccaaaccatatcactaatcTCAGTCTCAA--TTGC
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135339743 116 + 135778131 tcgtgattcaattccctcccaccgggtcacct-----------ggggactgtgggaactacaattcaagaggagatttggatggggacacacagccaaacagtatcaCTAATCTTAGTCTCAA--CTGC
i chlSab2.chr7                 C 0 C 0
s calJac3.chr3                 190452541 123 - 190850796 ccatgatttaataaccccc--ctgggtcgcttccacgacacatggggactgtgggagctacaattcaagatgagattt-catggggacccagcgccaaaccatatcTCTAATCTTAGTGT-AA--CTGC
i calJac3.chr3                 C 0 C 0
e mm10.chr8                     87587685 2163 - 129401213 I
e canFam3.chr16                 17884345  18 -  59632846 I

a score=409055.000000
s hg38.chr4_KI270925v1_alt        215279 144 +    555799 CATCATCAGAATACTGTCAGCACTTACTCTAATACCCCATGCGTTCATGTCCCTTTTGTAATTCACTCTTTCT----AAAGAACATTCTTCTCTTTGGCTACACAGCCTATCTTTCCAT-----------C---TTTTTTTTTTT--AAGTATAACTTATG--TAA
s panTro4.chr4_GL389869_random     48205 146 -     69473 CGTCATCAGAATACTGTCGGCACGTACTCTAATACCCCATGCGTTCATGTCCCTTTTGTAATTCACTCTTTCT----AAAGAACATTCTTCTCTTTGGCTACACAGCCTATCTTTCCAT-----------C---TTTTTTTTTTTTTAAGTATAACTTATG--TAA
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3872856 146 -  23176937 CATCATCAGAATACTGTCAGCACTTACTTTAATACCCCATGTGTTCATGTCCCTTTTGTAATTCACTCTTTCT----AAAGAACATCCTTCTGTTTGGCTACAAAGCCCATCTTTCCAT-----------C---TTTTTTCTTTTTTAAGTATAACTTATG--TAA
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113775354 147 + 115148730 CATCATCAGAATACTGTCGGCACTTACACTAATACCCCATACGTTCATGTCCCTTTTGTAATTCACTCTTTCTAAAGAAAGAACATTCTTCTCTTTGGCTACACAGCCCATCTTTCCAT-----------C---TTTTTTTTTT---AAGTATAATTTGTG--TAA
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183593137 144 + 184069350 CATCATCAGAATACTGTCAGCACGTACTTTAATTCCCCATGTGTTCATGTCCCTTTTGTAATTCACTCTTTCT----AAAGAACATTCTTCTCTTTGGCTACACAGCCCATCTTTCCAC-----------C---TTTTTTTTTTT--AAGTATAACTTATG--TAA
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188976834 147 + 189454096 CATCATCCGAATACTGTCAGCACGTACTTTAATTCCCCATGTGTTCATGTCCCTTTTGTAATTCACTCTTTCT----AAAGAACATTCTTCTCTTTGGCTACACAGCCCATCTTTCCAC-----------CTTTTTTTTTTTTTT--AAGTATAACTTATG--TAA
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178399932 143 + 178775436 CATCATCAGAATACTGTCAGCACGTACTTTAATTCCCCATGTGTTCATGTCCCTTTTGTAATTCactcttttt----aaagaacattctTCTCTTTGGCTACACAGCCCatctttccac-----------c----tttttttttt--aagtataactTATG--TAA
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135339859 144 + 135778131 CATCATCAGAATACTGTCAGCACGTACTTTAATTCCCCATGTGTTCATGTCCCTTTTGTAATTCACTCTTTCT----AAAGAACATTCTTCTCTTTGGCTACACAGCCCATCTTTCCAC-----------C---TTTTATTTTTT--AAGTATAACTTATG--TAA
i chlSab2.chr7                 C 0 C 0
s calJac3.chr3                 190452664 140 - 190850796 CATGGTCAGAACACTGTCAGCACTGACTTTAATACCCCATGTGTTCACGTCCCTTTTGTGGTTCA--GTTTGT----AAAGAACGTTGTTCTCTTCAGCCACCCAGCCCATCTTTCCAT-----------C---TTTTTCTTG----AAGCATGACTTACC--TAA
i calJac3.chr3                 C 0 C 0
s canFam3.chr16                 17884363 124 -  59632846 CATCATCAAAGTGCCTTCAGCACCTGTTCT-----CCCACCCGTTC-TGTC----------------CTTTCT-----------------CTCTTTGGCTACATTTCCCATTCTTTTATTACTAAAAACAC---attttatatttaaaaatataacgtatctttaa
i canFam3.chr16                I 18 C 0
e mm10.chr8                     87587685 2163 - 129401213 I

a score=22392.000000
s hg38.chr4_KI270925v1_alt        215423 8 +    555799 AAACTTTA
s panTro4.chr4_GL389869_random     48351 8 -     69473 AAACTTTA
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3873002 8 -  23176937 AAACTTTA
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113775501 8 + 115148730 AAACTTTA
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183593281 8 + 184069350 AAACTTTA
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188976981 8 + 189454096 AAACTTTA
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178400075 8 + 178775436 AAACTTTA
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135340003 8 + 135778131 AAACTTTA
i chlSab2.chr7                 C 0 C 0
s calJac3.chr3                 190452804 8 - 190850796 ACATGGCG
i calJac3.chr3                 C 0 C 0
s mm10.chr8                     87589848 8 - 129401213 AAACCTAG
i mm10.chr8                    I 2163 C 0
s canFam3.chr16                 17884487 8 -  59632846 aatattta
i canFam3.chr16                C 0 I 2791

a score=521403.000000
s hg38.chr4_KI270925v1_alt        215431 172 +    555799 AGGCTTCTGTGTCTTTTCTACATTT-TCACTGGCTCTCTAAGGGGTCATCTCAGGTGCCAATGAAGGCAGTCTTCAGTGTGGATTCCTTTCAAGGATGTGAAAATTAT----------------CTCTTCAAAATACATTAGGCAATGTCTGCCTACTTTGGATTTTGTGACGGCTTGAAACAATGCAG
s panTro4.chr4_GL389869_random     48359 172 -     69473 AGGCTTCTGTGTCTTTTCTACATTT-TCACTGGCTCTCTGAGGGGTCATCTCAGGTGCCAACGAAGGCATTCTTCAGTCTGGATTCCTTTCAAGGATGTGAAAATTAT----------------CTCTTCAAAATACATTAGGTAATGTCTGCCTACTTTGGATTTTGTGACGGCTTGAAACAATGCAG
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3873010 172 -  23176937 AGGCTTCTGTGTCTTTTCTACTTTT-TCACTGGCTCTCTGAGGGGTCATCTCAGGTGCCAACGAAGGCAGTCTTCAGTCTGGATTCCTTTCAAGGATGTGAAAATTAT----------------CTCTTCAAAATACATTAGGTAATTTCTGCCTACTTTGGATTTTGTGACGGCTTGAAACAATGCAG
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113775509 170 + 115148730 AGGCTTCTGTGTCTTTTCTACTTTT-TCACTGG--CTCTGAAGGTTCATCTCAGGTGCCAAAGAAGGCAGTCTTCAGTCTGGATTCCTTTCAAGGATGTGAAAAATAC----------------CTTTTCAAAATACATTAGGTAATTTCTGCCTACTTTGGATTTTGTGCTGGCTTGAAACAATGCAG
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183593289 172 + 184069350 AGCCTTCTGTGTCTTTTCTGCTTTT-TCACTGACTCTCTGAGGGGTCATCTCAGGTGCCAACGAAGGCAGTCTTCAGTCTGGATTCCTTTCAAGGATGTGAAAAATAT----------------CTCTTCAAAATACATTAGGTAATTTCTGCCTGCTTTGGATTTTGTGACGGCTTGAAACAATGCAG
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188976989 172 + 189454096 AGCCTTCTGTGTCTTTTCTGCTTTT-TCACTGACTCTCTGAGGGGTCATCTCAGGTGCCAACGAAGGCAGTCTTCAGTCTGGATTCCTTTCAAGGATGTGAAAAATAT----------------CTCTTCAAAATACATTAGGTAATTTCTGCCTGCTTTGGATTTTGTGACGGCTTGAAACAATGCAG
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178400083 172 + 178775436 AGCCTTCTGtgtcttttctgctttt-tcactGACTCTCTGAGGGGTCAGCTCAGGTGCCAATGAAGGCAGTCTTCAGTCTGGATTCCTTTCAAGGGTGTGAAAAATAT----------------CTCTTCAAAATACATTAGGTAATTTCTGCCTGCTTTGGATTTTGTGACGGCTTGAAACAATGCAG
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135340011 172 + 135778131 AGCCTTCTGTGTCTTTTCTGCTTTT-TCACTGACTCTCTGAGGGGTCATCTCAGGTGCCAACAAAGGCAGTCTTCAGTCTGGATTCCTTTCAAGGATATGAAAAATAT----------------CTCTTCAAAATACATTAGGTAATTTCTGCCTGCTTTGGATTTTGTGATGGCTTAAAACAATACAG
i chlSab2.chr7                 C 0 C 0
s calJac3.chr3                 190452812 172 - 190850796 TGGCTTCTGTTTCTCTTCTATTCTG-TCACTGGCCCTCTTCGGGAGCATCTCAGGCGCGAATGAAGGAAGTCTTCAGTCTGGATACCCTTCAGGTTTGTGAAAAATAT----------------CTCTTCAAAACACATTACGTAATTTCTGCCTACTTTGCATTTTGTTAAGTCTTAAAACAATGCAG
i calJac3.chr3                 C 0 C 0
s mm10.chr8                     87589856 180 - 129401213 AAATACCTGTTTGTCATCTGTGTTTGTTACTGGCCCTCTGAAGCAGAATTGCAAGTAGCAACAGAGGC-----TACATCTAGCTTATCTTCAAATGCatgagaaatatataaaaatatatgaaaatatataaaatataaaaGGTAGTCTCTGCCTAC-TTGTATTTT---CCATCTTAAAGCCACATTG
i mm10.chr8                    C 0 C 0
e canFam3.chr16                 17884495 2791 -  59632846 I

a score=861072.000000
s hg38.chr4_KI270925v1_alt        215603 242 +    555799 TCCACATTTTAACTGACAAGTTTAGAGGTG---TCAGTGGTATTTGA-------------------------GCTTTCTGTGCCTCAAAAACTCACCATCTCACACTGTTCATTGTCACCAGATCT--------------AAT---------------TGTGTCTCAGGTGACTTCATAATGTTCTCAAGGCCAGGTGCTGAGGCAGGAGGAAAGGACACACCCCAGAGGCAGGACTGTGAGTTTGAAGTCACCGCCAGCGTCTGCCCATTGCA-CTGTGCCCAGGACTCCTGTTTCCAT
s panTro4.chr4_GL389869_random     48531 242 -     69473 TCCACATTTTAACTGACAAGTTTAGAGGTG---TCAGTGGTATTTGA-------------------------GCTTTCTGTGCCTCAAAAACTCACCATCTCACACTGTTCATTGTCACCAGATCT--------------AAT---------------TGTGTCTCAGGTGACTTCATAATGTTCTCAAGGCCAGGTGCTGAGGCAGGAGGAAAGGACACACCCCAGAGGCAGGACTGTGAGTTTGAAGTCACCGCCAGCGTCTGCCCATTGCA-CTGTGCCCAGGACTCCTGTTTCCAT
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3873182 242 -  23176937 TCCACATTTTAACTGACAAGTTTAGAGATG---TCAGTGGTATTTGA-------------------------GATTTCTGTGCCTCAAAAACTCACCATCTCACACTGTTCATTGTCACCAGATCT--------------AAT---------------TGTGTCTCAGGTGACTTCATAATGTTCTCAAGGCCAGGTGCTGAGGCAGGAGGAAAGCACACACCCCAGAGGCAGGACTGTGAGATTGAAGTCACCGCCAGCGCCTGCCCATTGCA-CTGTGCCCAGGACTCCTGTTTCCGT
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113775679 242 + 115148730 TCCACATTTTACCTGACAAGTTTAGAGGTG---TCAGTGGTATTTGA-------------------------GCTTTCTGCCCCTCAAAAACTCACCATCTCACACTGTTCATTGTCACCAGATCT--------------CAC---------------TGTGTCTCAGGTGACTTCATAATGTTCTCAAGGCCAGGTGCTGAGGCAGGAGGAGAGGACACACCTCAGAGGCAGGACTGCGAGTTTGAAGTCACCGTCAGCGTCTGCCCAATGCA-CTGTGCATAGGACTCCTGTTTCCAT
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183593461 242 + 184069350 TTCCCATTTTAACTGACAAGGTTAAAGGTG---TCCGTGGTATTTGA-------------------------GCTTTCTGTGCCCCAAAAACTCACCATCTCACACTGTTCATTCTCACCAGATCT--------------CAT---------------TGCATCTCAGGTGACTTCATAATGCTCTCAAGGCCAGGTGCTGAGGCAGGAGTCGAGGATACACCCCAGAGGCAGGACTGTGAGTTTAAAGTCACCGCCAGCGCCTGCCCATTGCA-CTGTGCCCAGGACTCCTGTTTCCAT
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188977161 242 + 189454096 TTCCCATTTTAACTGACAAGGTTAAAGGTG---TCCGTGGTATTTGA-------------------------GCTTTCTGTGCCCCAAAACCTCACCATCTCACACTGTTCATTCTCACCAGATCT--------------CAT---------------TGCATCTCAGGTGACTTCATAATGCTCTCAAGGCCAGGTGCTGAGGCAGGAGGAGAGGATACACCCCAGAGGCAGGACTGTGAGTTTAAAGTCACCGCCAGCGCCTGCCCATTGCA-CTGTGCCCAGGACTCCTGTTTCCAT
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178400255 242 + 178775436 TTCACATTTTAACTGACAAGGTTAAAGGTG---TCCGTGGTATTTGA-------------------------GCTTTCTGTGCCTCAAAAACTCACCATCTCACACTGTTCATTCTCACCAGATCT--------------CAC---------------TGCATCTCAGGTGACTTCATAATGCTCTCAAGGccaggtgctgaggcaggaggagaggatacACCCCAGAGGCAGGACTGTGAGTTTAAAGTCACCGCCAGCGCCTGCCCATTGCA-CTGTGCCCAGGACTCCTGTTTCCAT
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135340183 241 + 135778131 TTCACATTTTAACTGACAAGGTTAAAGGTG---TCCGTGGTATTTGA-------------------------GCTTTCTGTGCCTCAAAAACTCACCATCTCACACTGTTCATTCTCACCAGGTCT--------------CAT---------------TGCATCTCAGGTGACTTCATAATGTTCTCAAGGCCAGGTGCTGAGGCAGGAGGAGAGGACACA-CCCAGAGGCAGAACTGTGAGTTTAAAGTCACCGCCAGCGCTTGCCCATTGCA-CTGTGCCCAGGACTCCTGTTTCCAT
i chlSab2.chr7                 C 0 C 0
s calJac3.chr3                 190452984 242 - 190850796 TTCATATTTTAGCTCACAAGTTTAGAGGTG---TCAGTGGTATTTGA-------------------------GTTTTCTGTGCGTCAGAAACTCACCGTCCCATACTGCTCATTGTCACCAGATCT--------------GAT---------------TGCATCTCAGATGACTTCATAATGTTCTTAAGGCCAAGTGCTGAGGCAGGAGGAGAGGACACACCCCAGAGGCAAGACTGCAAGTTTGAGGTCACAGCCAGCGTCTGCCCATTGCT-CTCTGCCCAGGACCTCCATTTCCAT
i calJac3.chr3                 C 0 C 0
s mm10.chr8                     87590036 258 - 129401213 CCTATATTTTAAATGACAGATTTTGAGGGGCCACCAACAGTATTTGA-------------------------GATTCTTATGACTGTGGAACTCACTATCCTATACGTCTCTTAGTTACCACATCCTAAGAGGGGGTTAAGAT---------------GACATCTCTGTCTACTACACAATGGCCATGATGCCAAATGCTGAGCTAAGAGAAAAGAAAAGATACAGGGAGTAGAA-TGAGAGTTTTAACTCAAAACCAGCATTTGTTCTTTATG-TTGTTTTGCAGACTCCTATTTCCAT
i mm10.chr8                    C 0 I 1353
s canFam3.chr16                 17887286 282 -  59632846 TCTAAATTTTGAGTGAGAGGTTTAGAGGGG---TCAGTAGTATTTGGCCAGGTACAATGGACAACTCATTGTGTTTCCTATGCCTGAGGGACTCATCACTCCACAAGGCTCTTAGTCACTGGATCC--------------CATGAGGTAGTCAAGAGCTACATCCTAGGTGATTTCATAATGTTTACAACACCAAGT-CTGAGATGGAAAGAAAGAAAACACCCAAATGGTAAGACTGAGAATTCAAAGCCACAATCAGCCTGTGTTCATTATGCCTTTTCCCAGGACCTCTATTTCCAT
i canFam3.chr16                I 2791 I 7

a score=476105.000000
s hg38.chr4_KI270925v1_alt        215845 153 +    555799 GGCCTGGGCTGGACCATGCTGTAGCCCTGGGCGCtgcctgcacctgagaattacccaaagcacctgcaaaatgtgt--gaatcccttgcccttagcctaaggaatttcaatttataaattatttctgcctgtgggtctcaaacatggataatttt
s panTro4.chr4_GL389869_random     48773 153 -     69473 GGCCTGGGCTGGACCATGCTGTAGCCCTGGGCGCtgcctgcacctgagaattatccaaagcacttgcaaaatgtgt--gaatcccttgcccttagcctaaggaatttcaatttataaattatttctgcctgtgggtctcgaacatggataatttt
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3873424 153 -  23176937 GGCCTGGGCTGGACCATGCTGTAGCCCTGGGCGCtgcctgcacctcagaattatccaaagaacctgcaaaatgtgt--gaatcccttgcccttagcctaaagaatttcgatttataaattatttctgcctgtgggtctcaaacatggataatttt
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113775921 153 + 115148730 GGCCTGGGCTGGACCGTGCTATAGCCCTGGATGCtgcctgcacctcagaattatccaaagcacctgcaaaatgtgt--gaatcccttgcccttagcctaaggaatttcaatttataaattatttctacctgtgggtctcaaacatggataatttt
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183593703 153 + 184069350 GGCCTGGGCTGGACTGTGCTGTAGCCATGGGCACTGCCTGCTCCTCAGAATTATCCAAAGCACCTGCAAAATGTGC--GAATCCCTAGCCCTTAGCCCAAGGAATTTCCATTTATAAATTTTTTCTGCCTgtgagtctcaaacatggatagtttt
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188977403 153 + 189454096 GGCCTGGGCTGGACTGTGCTGTAGCCATGGGCACtgcctgctcctcagaattatccaaagcacctgcaaaatgtgc--gaatccctagcccttagcccaaggaatttcgatttataaattttttctgcctgtgagtctcaaacatggataatttt
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178400497 153 + 178775436 GGCCTGGGCTGGACTGTGCTGTAGCCATGGGCACTGCCTGCTCCTCAGAATTATCCAAAGCACCTGCAAAATGTGC--GAATCCCTAGCCCTTAGCCCAAGGAATTtcgatttataatttttttctgcctgTGAGTCTCAAacatggataatttt
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135340424 153 + 135778131 GGCCTGGGCCGAACCATGCTGTAGCCATGGGCACTGCCTGCTCCTCAGAATTATCCAAAGCACCTGCAAAATGTGC--GAATCCCTAGCCCTTAGCCCAAGGAATTTCGATTTATAAATGTTTTCTGCTTCtgagtctcaaacacggataatttt
i chlSab2.chr7                 C 0 C 0
s calJac3.chr3                 190453226 137 - 190850796 GGCATGGGTTGGACCATG---------------CTGCCTGCACCTCAGAATTAGCCAAAGCACTTGCACAGTGTGT--GAATCCCCAGTCCTTAGCCTAA-GAATTTTGATTTATAAAATTTTTCTGCCTGTGGGTCTCAAACATGGATAATTTT
i calJac3.chr3                 C 0 I 331
s canFam3.chr16                 17887575 153 -  59632846 GGGATGAGCTAGACTGTGCAATATCCATAGG-GCtggctgcacatcagaatcatctaaagacctttcaaaacataccaggacccatggctctatg-ctaagggtgactgacttacaaagtttttctgccaagggggcccaaacatggatagtctt
i canFam3.chr16                I 7 C 0
e mm10.chr8                     87590294 1353 - 129401213 I

a score=122511.000000
s hg38.chr4_KI270925v1_alt        215998 43 +    555799 aaaatcttcttaagaaatgctgatgtgcaaccagggttaagga
s panTro4.chr4_GL389869_random     48926 43 -     69473 aaaatcttcttaagaaatgctgaagtgcaaccagggttaagga
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3873577 43 -  23176937 aaaatcttcttaagaaatgctgatgtgcaacgagggttaagga
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113776074 43 + 115148730 aaaatcttcttaagaaatgctgatgtgcaaccagggttaagga
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183593856 43 + 184069350 taaatcttcttaagaaatgctgatatgcagccagggttaagga
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188977556 43 + 189454096 taaatcttcttaagaaatgctgatatgcagccagggttaagga
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178400650 43 + 178775436 taaatcttcttaagAAATGCTGATATGTAGCCAGGGTTAAGGA
i papAnu2.chr5                 C 0 T 13
s chlSab2.chr7                 135340577 43 + 135778131 taaatcttcttaagaaatgctgatatgcagccagggttaagga
i chlSab2.chr7                 C 0 C 0
s canFam3.chr16                 17887728 43 -  59632846 tatatcttcccaagagatactaacatgcaaccagggttgaaga
i canFam3.chr16                C 0 C 0
e mm10.chr8                     87590294 1353 - 129401213 I
e calJac3.chr3                 190453363 331 - 190850796 I

a score=9859.000000
s hg38.chr4_KI270925v1_alt        216041 9 +    555799 ccacAGAGC
s panTro4.chr4_GL389869_random     48969 9 -     69473 ccacAGAGC
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3873620 9 -  23176937 ccactgAGC
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113776117 9 + 115148730 ccacAGAGC
i nomLeu3.chr7b                C 0 C 0
s macFas5.chr5                 188977599 9 + 189454096 ccactgAGC
i macFas5.chr5                 C 0 T 22
s canFam3.chr16                 17887771 9 -  59632846 tcactgAAc
i canFam3.chr16                C 0 C 0
e mm10.chr8                     87590294 1353 - 129401213 I
e calJac3.chr3                 190453363 331 - 190850796 I
e chlSab2.chr7                 135340620 0 + 135778131 C
e papAnu2.chr5                 178400693 13 + 178775436 T
e rheMac3.chr5                 183593899 0 + 184069350 C

a score=6438.000000
s hg38.chr4_KI270925v1_alt        216050 41 +    555799 GAGAATGCCCAGA---AGGCTTGGCGGAACTCGGATCCTTGGGC
s panTro4.chr4_GL389869_random     48978 41 -     69473 GAGAATGCCCAGA---AGGCTTGGCGGAACTCAGATTCTTGGGC
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3873629 32 -  23176937 GAGAATGCCCAGA---AGGCTTGGTGGAACTCAGA---------
i ponAbe2.chr4_random          C 0 C 0
s canFam3.chr16                 17887780 24 -  59632846 aacagttctcaaatgtaggcttgc--------------------
i canFam3.chr16                C 0 C 0
e mm10.chr8                     87590294 1353 - 129401213 I
e calJac3.chr3                 190453363 331 - 190850796 I
e chlSab2.chr7                 135340620  0 + 135778131 C
e papAnu2.chr5                 178400693 13 + 178775436 T
e macFas5.chr5                 188977608 22 + 189454096 T
e rheMac3.chr5                 183593899  0 + 184069350 C
e nomLeu3.chr7b                113776126  0 + 115148730 C

a score=6174.000000
s hg38.chr4_KI270925v1_alt        216091 63 +    555799 CCTGGGTTAAGGACCACAGAGCAAGAATGCCCAGAAGGCTTGGCGGAACTCAGATCCCTGGAC
s panTro4.chr4_GL389869_random     49019 12 -     69473 CCTGGGTTAAGG---------------------------------------------------
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3873661  9 -  23176937 ------------------------------------------------------TCCCTGGAT
i ponAbe2.chr4_random          C 0 C 0
s macFas5.chr5                 188977586 63 + 189454096 ccagggttaaggaccactgAGCGAAAATGCCCAGAAGGCTTGGTGGAACTCAGATCCCTGGAC
i macFas5.chr5                 T 22 C 0
s papAnu2.chr5                 178400680 63 + 178775436 CCAGGGTTAAGGACCACTGAGTGAGAATGCCCAGAAGGCTTGGTGGAACTCAGACCCCTGGAC
i papAnu2.chr5                 T 13 C 0
s canFam3.chr16                 17887804 37 -  59632846 -------------------atcggaattgcccaggggggttgttaaaatatagatc-------
i canFam3.chr16                C 0 C 0
e mm10.chr8                     87590294 1353 - 129401213 I
e calJac3.chr3                 190453363 331 - 190850796 I
e chlSab2.chr7                 135340620  0 + 135778131 C
e rheMac3.chr5                 183593899  0 + 184069350 C
e nomLeu3.chr7b                113776126  0 + 115148730 C

a score=4054.000000
s hg38.chr4_KI270925v1_alt        216154 5 +    555799 CCTGG
s ponAbe2.chr4_random            3873670 5 -  23176937 CCTGG
i ponAbe2.chr4_random          C 0 C 0
s macFas5.chr5                 188977649 5 + 189454096 CCTGG
i macFas5.chr5                 C 0 T 46
s papAnu2.chr5                 178400743 5 + 178775436 CCTGG
i papAnu2.chr5                 C 0 T 55
s calJac3.chr3                 190453694 5 - 190850796 ccagg
i calJac3.chr3                 I 331 C 0
e mm10.chr8                     87590294 1353 - 129401213 I
e canFam3.chr16                 17887841 0 -  59632846 C
e chlSab2.chr7                 135340620 0 + 135778131 C
e rheMac3.chr5                 183593899 0 + 184069350 C
e nomLeu3.chr7b                113776126 0 + 115148730 C
e panTro4.chr4_GL389869_random     49031 0 -     69473 C

a score=1307.000000
s hg38.chr4_KI270925v1_alt        216159 8 +    555799 GTTAAGGG
s panTro4.chr4_GL389869_random     49031 1 -     69473 -------G
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3873675 8 -  23176937 ATTAAGGG
i ponAbe2.chr4_random          C 0 C 0
s calJac3.chr3                 190453699 8 - 190850796 gttaagga
i calJac3.chr3                 C 0 C 0
e mm10.chr8                     87590294 1353 - 129401213 I
e canFam3.chr16                 17887841 0 -  59632846 C
e chlSab2.chr7                 135340620 0 + 135778131 C
e papAnu2.chr5                 178400748 55 + 178775436 T
e macFas5.chr5                 188977654 46 + 189454096 T
e rheMac3.chr5                 183593899 0 + 184069350 C
e nomLeu3.chr7b                113776126 0 + 115148730 C

a score=16162.000000
s hg38.chr4_KI270925v1_alt        216167 9 +    555799 CCACTGAGG
s panTro4.chr4_GL389869_random     49032 9 -     69473 CCACTGAGG
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3873683 9 -  23176937 CCACTGAGC
i ponAbe2.chr4_random          C 0 C 0
s rheMac3.chr5                 183593899 9 + 184069350 ccactgAGC
i rheMac3.chr5                 C 0 C 0
s papAnu2.chr5                 178400693 9 + 178775436 CCACTGAGT
i papAnu2.chr5                 T 55 C 0
s chlSab2.chr7                 135340620 9 + 135778131 ccactgAGC
i chlSab2.chr7                 C 0 C 0
s calJac3.chr3                 190453707 9 - 190850796 ccactgAGC
i calJac3.chr3                 C 0 C 0
s canFam3.chr16                 17887841 6 -  59632846 --actgag-
i canFam3.chr16                C 0 C 0
e mm10.chr8                     87590294 1353 - 129401213 I
e macFas5.chr5                 188977654 46 + 189454096 T
e nomLeu3.chr7b                113776126 0 + 115148730 C

a score=60011.000000
s hg38.chr4_KI270925v1_alt        216176 24 +    555799 GAGAATGCCCAGAAGGCTTGGCGG
s panTro4.chr4_GL389869_random     49041 24 -     69473 Gagaatgcccagaaggcttggtgg
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3873692 24 -  23176937 Gagaatgcccagaaggcttcgtgg
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113776126 24 + 115148730 Gagaatgtccagaagacttggcag
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183593908 24 + 184069350 GAGAATGCCCAGAAGGCTTGGTGG
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188977608 24 + 189454096 GAAAATGCCCAGAAGGCTTGGTGG
i macFas5.chr5                 T 46 C 0
s papAnu2.chr5                 178400702 24 + 178775436 GAGAATGCCCAGAAGGCTTGGTGG
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135340629 24 + 135778131 GAGAATGCCCAGAAGGCTTGGTGG
i chlSab2.chr7                 C 0 C 0
s calJac3.chr3                 190453716 15 - 190850796 AAGAACACCCA---------GCGG
i calJac3.chr3                 C 0 C 0
e mm10.chr8                     87590294 1353 - 129401213 I
e canFam3.chr16                 17887847  0 -  59632846 C

a score=3015827.000000
s hg38.chr4_KI270925v1_alt        216200 1018 +    555799  
s panTro4.chr4_GL389869_random     49065  961 -     69473  
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3873716  933 -  23176937  
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113776150  987 + 115148730  
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183593932  917 + 184069350  
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188977632  917 + 189454096  
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178400726  917 + 178775436  
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135340653  917 + 135778131  
i chlSab2.chr7                 C 0 C 0
s calJac3.chr3                 190453731  894 - 190850796  
i calJac3.chr3                 C 0 C 0
s mm10.chr8                     87591647  919 - 129401213  
i mm10.chr8                    I 1353 I 378
s canFam3.chr16                 17887847  842 -  59632846  
i canFam3.chr16                C 0 C 0

a score=34993.000000
s hg38.chr4_KI270925v1_alt        217218 17 +    555799 ACCCTAGTTAATAATAA
s panTro4.chr4_GL389869_random     50026 17 -     69473 ACCCTAATTAATaataa
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3874649 17 -  23176937 ACCCTAATTACTaataa
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113777137 17 + 115148730 ACCCTAATTAATAGTAA
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183594849 17 + 184069350 GCCATAATTAACaataa
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188978549 17 + 189454096 GCCATAATTAACaataa
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178401643 17 + 178775436 Gccataattaacaataa
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135341570 17 + 135778131 GCCATAATTAACAATAA
i chlSab2.chr7                 C 0 C 0
s calJac3.chr3                 190454625 11 - 190850796 ACCACAAT------TAA
i calJac3.chr3                 C 0 C 0
s canFam3.chr16                 17888689 16 -  59632846 -GTACTACTAGTAGTAG
i canFam3.chr16                C 0 C 0
e mm10.chr8                     87592566 378 - 129401213 I

a score=1161828.000000
s hg38.chr4_KI270925v1_alt        217235 365 +    555799 TAATAGTTGTCTC----------------TTCAAACCCCTGCTGTGAGCCATGTATTGTCTTAACCACCTTCTGCCCTGTATCATTCTACT-AAAGCAC---CTGCATAAGTAGGTATTACTTAGTAAGGAAACTGGGGCATAGC-TAGCTGGATTAATACCTGGCAAGAAATAGGAAGTGAAGATGGGATTTGCTCCTTGTGTGTCTGGGTGGAAAGCAAAGGTTCTTTCCGCAGTGCACTGTGTACATAAACTTGCAGCCAAACACCGTTATAAAGGCTGTGAAAGATGCAGAGAAATGCAACACTTCTTATTAGTTTCCTAATCTCAAAATGCAGGTAGCCTAGTTAAGGAGATAAAATTACATATAAGAAAAATTAAGTAAC
s panTro4.chr4_GL389869_random     50043 365 -     69473 taatagttgtctc----------------ttcaaacccctgctgtgagccatgtattgtcttaaccaccttctgctctgtatcattctact-aaagcac---ctgcataagtaggtattacttagtaaggaaactggggcatagc-tagctggattaatacctggcaagaaataggaagtgaagatgggatttgctccttgtgtgtgtgggtggaaagcaaaggctctttccgcagtgcacTGTGTACGTAAACTTGCAGCCAAACACCATTATAAAGGCTGTGAAAGATGCAGAGAAATGCAACACTTCTTATTAGTTTCCTAATCTCAAAATGCAGGTAGCCTAGTTAAGGAGATAAAATTACATATAAGAAAAATTAAGTAAC
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3874666 365 -  23176937 taatagttgtctc----------------ttcaaacccctgctgtgagccatgtattgtcttaaccaccttctgccctgtatcattctact-aaagcac---ctgcataagtaggtattacttagtaaagaaactggggcatagc-tagctggattaatacctagcaagaaataggaagtgaagatgggatttgctccttgtgtgtctgggtggaaagtgaaggctctttccgcagtgcacTGTGTACATAAACTTGCAGCCAAACACCATTATAAAGGCTGTGAAAGATGCAGAGAAATACAACACTTCTTATTGGTTTTCTAATCTCAAAATGCAGGTAGCCTAGTTAAGGAGATAAAATTACATATAAGAAAAATTAAGTAAC
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113777154 363 + 115148730 TAATAGT--TCTC----------------TTCAaactcctgctgtgagccacgtattgtcttaaccaccttctgccctgtatcattctact-acagcac---ctgcataagtaggtattacttagtaaggaaactggggcatagc-taactggattaatacctggccagaaataggaagtgaagatgggatttgctccttgtgtgtctgggtggaaagcgaaggctctttccacagtgcacTGTGTACATAAACGTGCAGCCAAACACCATCATAAAGGCTGTGAAAGATGCAGAGAAATGCAACACTTCTTACAAGTTTCCTAATCTCAAAATGCAGGTAGCCTAGTTAAGTAGATAAAATTATATATAAGAAAAATTAAGTAAC
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183594866 364 + 184069350 taatagttacctc----------------ttcaaacgcttgctgtgagccacgtattgtcttaaccaccttctgccctgtatcattctact-aaagcac---ctgcataagtaggtattacttagtaaggaaactggggcATAGC-TAGCTGGACTAATACCTGGCAAGAAATCTGAAGTGAAGGTGGGATTTGCT-CTTGTGTGTCAGGAAGGAAAGCGAAGGCTCGCTCCACAGTGCACTGTGTAGATAAACTTGCAGCCAAACACCATTACAGAAGCTGTGAATGATGCAGAGAAACACAACACTTCTTATTAGTTCCCTGATCTCAAAATGCATGTAGCCTAGTTAGGGAGAGAAAAACATATATAAGAAAAATTAAGTAAC
i rheMac3.chr5                 C 0 I 466
s macFas5.chr5                 188978566 364 + 189454096 taatagttacctc----------------ttcaaacgcttgctgtgagccacgtattgtcttaaccaccttctgccctgtatcattctact-aaagcac---ctgcctaagtaggtattactTAGTAAGGAAACTGGGGCATAGC-TAGCTGGACTAATACCTGGCAAGAAATCTGAAGTGAAGGTGGGATTTGCT-CTTGTGTGTCAGGAAGGAAAGCGAAGGCTGTTTCCACAGTGCACTGTGTAGATAAACTTGCAGCCAAACACCATTACAGAAGCTGTGAATGATGCAGAGAAACACAACACTTCTTATTAGCTCCCAGATCTCAAAATGCATGTAGCCTAGTTAGGGAGAGAAAAACATATATAAGAAAAATTAAGTAAC
i macFas5.chr5                 C 0 I 466
s papAnu2.chr5                 178401660 364 + 178775436 taatagttactTC----------------TTCAAACGCCTGCTGTGAGCCACGTATTGTCTTAACCACCTTCTGCCCTGTATCATTCTACT-AAAGCAC---CTGCATAAGTAGGTATTACTTAGTAAGGAAACTGGGGCATAGC-TAGCTGGACTAATACCTGGCAAGAAATCGGAAGTGAAGGTGGGATTTGCT-CTTGTGTGTCAGGAAGGAAAGCGAAGGCTCTTTCCGCAGTGCACTGTGTAGATAAACTTGCAGCCAAACACCATTACAGAAGCTGTGAAAGATGCAGAGAAACGCAACACTTCTTATTAGTTCCCTGATCTCAAAATGCATGTAGCCTAGTTAAGGAGAGAAAAtcatatataagaaaaattaagtaac
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135341587 363 + 135778131 TAATAGTTACCTC----------------TTCAAACGCCTGCTGTGAGCCACGTATTGTCTTAACCACCTTCTG-CCTGTATCATTCTACT-AAAGCAC---CTGCATAAGTGGGTATTACTTAGTAAGGAAACTGGGGCATAGC-GAGCTGGACTAATACCTGGCAAGAAATCGGAAGTGAAGGCGGGATTTGGT-CTTGTGTGTCAGGGAGGAAAGCGAAGGCTCTTTCCGCAGTGCACTGTGTAGATAAACTTGCAGCCAAACACCATTATAGAAGCTGTGAAAGATGCAGAGAAATGCAACACTTCTTATTAGTTCCCTGACCTCAAAATGCATGTAGTCCAGTTAAAGAGAGAAAATCATATAAAAGAAAAATTAAGTAAC
i chlSab2.chr7                 C 0 C 0
s calJac3.chr3                 190454636 350 - 190850796 TAATAGTTGTCCC----------------TTCAAACTCCTGCTGTAAGCCACGTGTTATGTTGACAGCCTTCTGTGCTGTGTCATTCCGGT-AACACAC---CTGCATAAGTAGATATCACTTAGTAAGGAGGCTGGGGCATAGC-TGGCTGGATTAACACCTGGCAAG-AATAGGGAGTGAGGGTGGGA-------------TGTCTGGGTGGAAGGTGGAGGCTCTCTCTGCCGTGCATTGTGTACACAAACTTACA-CCAAACACTGTAATGAAGGCCGTGAGAGATGGAAAGAAATGCAACACTTCCTAGTAGCTTCCTAATCTCAAAATGCATATAACCTAGTTAAGaaaataaaattatatataagaaaaattaaGTAAC
i calJac3.chr3                 C 0 C 0
s mm10.chr8                     87592944 323 - 129401213 TAACAGATATCT-----------------TCCACACTCCTACTGTGGACCAGGTACTGTGTTAATT-CCCTCTGCACAGTGTTTTTTCATGAAAAGCAT--GCAGTAAGAGTCAGTAATACTTGACAAGGAAACT------------AGTTAGGTTAGCA-CTGGTGA-AAGCCAGACATGAAGGTTGAGTTTACA-CTC---TGATCTGACTCAAAGTTAGGGCTCTCTCCCC--TCAGATGTCCACACATACTTGTAGAAAGATGCCACTCTAAGAGCTATGAAATATGTAAAGAAATAATACATTTA-TATCAGT-------------------GACAATCTGGCTCAAAAGATAAAATTATATGTAGGGAAAACTACAG---
i mm10.chr8                    I 378 C 0
s canFam3.chr16                 17888705 362 -  59632846 TAGCAAGTGTTTTATTCAAACacatattattcaaatccctgctatgtgccagataatgtcctaaataccttctgcacagtatcatcccact-aaacaactctctgtataggtagatattattaggtaaggaaatttgcctaaggtatgactgggttaatatttgccaa--aataagaggtaaagcggggatccata-ctc---tatctgggtagaaacctgatgctgtttccat--tatactgtaTACACATACTTGTAGCCAAACATCTGTATAAGGGCTGTGAAAGATGCAAGGAGATAGAATATATAATACCAGCTTCTTAACCTAAAAAAGCACGTAGCCTAGTTGAGAAGATAAAAATATTTAAAC---------------
i canFam3.chr16                C 0 C 0

a score=15798.000000
s hg38.chr4_KI270925v1_alt        217600 4 +    555799 AACA
s panTro4.chr4_GL389869_random     50408 4 -     69473 AACA
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3875031 4 -  23176937 AACA
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113777517 4 + 115148730 AACA
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183595696 4 + 184069350 aACG
i rheMac3.chr5                 I 466 C 0
s macFas5.chr5                 188979396 4 + 189454096 aACG
i macFas5.chr5                 I 466 C 0
s papAnu2.chr5                 178402024 4 + 178775436 aaca
i papAnu2.chr5                 C 0 I 466
s chlSab2.chr7                 135341950 4 + 135778131 AACA
i chlSab2.chr7                 C 0 I 464
s calJac3.chr3                 190454986 4 - 190850796 AACA
i calJac3.chr3                 C 0 C 0
s mm10.chr8                     87593267 4 - 129401213 AGTA
i mm10.chr8                    C 0 C 0
s canFam3.chr16                 17889067 4 -  59632846 AACA
i canFam3.chr16                C 0 C 0

a score=2072897.000000
s hg38.chr4_KI270925v1_alt        217604 634 +    555799  
s panTro4.chr4_GL389869_random     50412 635 -     69473  
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3875035 633 -  23176937  
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113777521 634 + 115148730  
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183595700 632 + 184069350  
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188979400 632 + 189454096  
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178402494 632 + 178775436  
i papAnu2.chr5                 I 466 C 0
s chlSab2.chr7                 135342418 632 + 135778131  
i chlSab2.chr7                 I 464 I 13
s calJac3.chr3                 190454990 633 - 190850796  
i calJac3.chr3                 C 0 C 0
s mm10.chr8                     87593271 658 - 129401213  
i mm10.chr8                    C 0 C 0
s canFam3.chr16                 17889071 716 -  59632846  
i canFam3.chr16                C 0 C 0

a score=20764.000000
s hg38.chr4_KI270925v1_alt        218238 11 +    555799 GAGCACAGCAG
s panTro4.chr4_GL389869_random     51047 11 -     69473 GAGCACAGCAG
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3875668 11 -  23176937 GAGCACAGCAG
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113778155 11 + 115148730 GAGCACAGCAG
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183596332  5 + 184069350 ------agcag
i rheMac3.chr5                 C 0 I 8
s macFas5.chr5                 188980032  5 + 189454096 ------agcag
i macFas5.chr5                 C 0 I 8
s papAnu2.chr5                 178403126  5 + 178775436 ------AGCAG
i papAnu2.chr5                 C 0 I 8
s calJac3.chr3                 190455623 11 - 190850796 GAGCACCACAG
i calJac3.chr3                 C 0 C 0
s mm10.chr8                     87593929 11 - 129401213 AAGCAGAACAA
i mm10.chr8                    C 0 C 0
s canFam3.chr16                 17889787 11 -  59632846 aagcatagcaa
i canFam3.chr16                C 0 C 0
e chlSab2.chr7                 135343050 13 + 135778131 I

a score=665815.000000
s hg38.chr4_KI270925v1_alt        218249 222 +    555799 -AAAGAAGCATGGGTGAAGGGATCCGAGAGTCAATCCTACCTGGCAAAT----AGGAGTGTGATCCTGGC-ATCCAGTTTGTATCTCAGAGTCTTTGTTCCCAGGTAGAACTGGGAGACTGAGCTAGATcaggggttcttagaaaacagttgagggggatcatgaactt-aatgaaagaatgaatctttatttcctataatctttaactaaaatgtatagc----------------acttcctc
s panTro4.chr4_GL389869_random     51058 221 -     69473 -AAAGAAGCGTGGGTGAAGGGATCCGAGAGTCAATCCTACCTGGCAAAC----AGGAGTGTGATCCTGGC-ATCCAGTTTATATCTCAGAGTCTTTGTTCCCAGGTAGAACTGGGAGACTGAGCTAGATcaggggttcttagaaatcagttgagggg-atcgtgaactt-aatgaaagaatgaatctttatttcctataatctttaactaaaatgtatagc----------------acttcctc
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3875679 221 -  23176937 -AAAGAAGCGTGGGTGAAGGGATCTGAGAGTCAATCCTACCTGACAAAC----AGCAGTGTGCTCCTGGC-ATCCAGTTTATATCTCAGGGTCTTTGTTCCCAGGTAGAACTGGGAGACAGAGCTAGATcaggggttcttagaaatcagttgagggg-atcatgaactt-aaggaaagaatgaatctttatttcctataaccttcaactaaaatgtctagc----------------atttcctc
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113778166 217 + 115148730 -AAAGAAGAGTAGGTGACGGGATCCGAGAGTCAATCCTGACTGGCAAAC----AGCAGTGTGATCCTGGC-ATCCAGTTTATATCTCAGGGCCTTTGTTCCCAGGTAGAATTGGGAGACTGAGCTAGATCAGGGGTTCTtagaaatcagctgaggga-atcatgaactt-aatgaaagaatgaatctttatttcctataatctt----taaaatgtatagc----------------atttcctc
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183596345 217 + 184069350 -aaagaaccgtgggcaaagggatctgagaagcagtcctacttggcaaaa----agcagtgtgatcctggc-atccagtttacttctcagggcctttgttcccaggtagaattgggagattgagctagatCAGGGCTTCTtagaaatcagttgagggg-atcatgaactt-aatgaaagaatgaatctttatttcctatgatctt----taaagtgtatagc----------------acttcctc
i rheMac3.chr5                 I 8 C 0
s macFas5.chr5                 188980045 217 + 189454096 -aaagaaccgtgggcaaagggatctgagaagcagtcctacttggcaaaa----agcagtgtgatcctggc-atccagtttacttctcagggcctttgttcccaggtagaattgggagattgagctagatCAGGGCTTCTtagaaatcagttgagggg-atcatgaactt-aatgaaagaatgaatctttatttcctatgatctt----taaagtgtatagc----------------acttcctc
i macFas5.chr5                 I 8 C 0
s papAnu2.chr5                 178403139 169 + 178775436 -AAAGAACCGTGGGCAAAGGGATCTGAGAAGCAGTCCTACTTGGCAAAA----AGCAGTGTGATCCTGGC-------------------------------------------------TGAGCTAGATCAGGGCTTCTTAGAAATCAGTTGAGGGG-ATCATGAACtt-aatgaaagaatgaatctTTATTTCCTATGATCTT----TAAAATGTATAGC----------------ACTTCTTC
i papAnu2.chr5                 I 8 C 0
s chlSab2.chr7                 135343063 217 + 135778131 -aaagaaccatgggcaaagggatctgagaagcagtcctacttggcaaac----agcaatgtgatcctggc-atccagtttacttctcagggcctttgttcccaggtagaattgggagattgagctagatCAGGGCTTCTtagaaatcagttgagggg-atcatgaactt-aatgaaagaatgaatctttatttcctatgatctt----taaaatgtatagc----------------acttcctc
i chlSab2.chr7                 I 13 C 0
s calJac3.chr3                 190455634 222 - 190850796 -ATAGAGCCGCGGGTTAAGGGATCGGAGGGAGAATCCCATTTGGCAAAC----AGCAGCGTGATCCTGGC-GTCCAGTTGACTCCTCAGGGCTTTTGCTCCCAGGTAGAATTGGGAGACTGAGCTAGATCAGGGGCTCGTAGAAATCGGttgagggg-atcctgaacttaaatgaaagaatgagtctttatttcctataatctttaattaaaaggtatagc----------------acttcctc
i calJac3.chr3                 C 0 C 0
s mm10.chr8                     87593940 202 - 129401213 -ACAGGAAAAGAAATAACAAGAACCAAGAGTGAATCCTACTTAGCTAAA----AACAGTGTGATTTTGGC-AATTTATTTATGTCTTTGGGCCTTTACTCCCTAATAAAACTCA------------------------------------CGGAGAA-ATCATGAGCTTAAATATGAAAACACATCTCTATTTTCTAAAATCTCCAACTAAAACACATAACCCTATTCTGATATAATACTTCctt
i mm10.chr8                    C 0 I 105
s canFam3.chr16                 17889798 224 -  59632846 aaaaagaactggattaaagggatccaagattgaatctcatttggccaacaatgaactatgtgatcttggtaattcattttacatctcagggcc-ttgtttctgggtaaaattgggaaactgaactagatgaAGGGTTCATAGGATTCattt-agggg-atcacatacataaataggaaaaggcattttttatttttttaaccta--actaaaatttatagc----------------aactcctc
i canFam3.chr16                C 0 C 0

a score=747241.000000
s hg38.chr4_KI270925v1_alt        218471 232 +    555799 caattatgaatgtaagtc------------------------------------------------------------------------------------ataaaccacaatactactaaccatacatgtta-tattgttccaatacaaattacagatattttcacatt--ag-tata--attttt--a--gttatctcagaatatcatttatgatcactagctcttcaaatttacaaagatcatctcagtcacagctgtt------tccc-tttacttaatgcattgggaaagaagcacatgcatgactgtatcaaaacatccttaaaaa
s panTro4.chr4_GL389869_random     51279 232 -     69473 caattatgaatgtaagtc------------------------------------------------------------------------------------ataaaccacaatactactaaccgtacatgtga-tattgttccaatacaaattacagatattttcacatt--ag-tata--attttt--a--gttatctcaaaatatcatttacgatcactagctcttcaaatttacaaagatcatctcagtcacagctgtt------tccc-tttacttaatgcattgggaaagaagcacatgcataactgtatcataacatccttaaaaa
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3875900 227 -  23176937 caattatgaatgtaagtc------------------------------------------------------------------------------------ataaaccacaatactactaaccatacatgtga-tattgttccaatacaaattacagatattttcacatt--ag-tata--atcttt--a--gttatctcaaaatatcatttatgatcactagctcttcaaatttacaaagatcatcacagtcacagctgtt------tcc------cttaaggcattgagaaagaagcacatgcataactgtatcataacatccttaaaaa
i ponAbe2.chr4_random          C 0 I 1
s nomLeu3.chr7b                113778383 232 + 115148730 caattatgaatgtaagtc------------------------------------------------------------------------------------ataaaccacaacactactaaccatacatgtga-tattgttccaatacaaattacagatattttcacatt--ag-tata--attttt--a--gttatctcaaaatatcatttatgatcactagctcttcaactttacaaagatggtcacagtcacagctgtt------tccc-tttacttaatgcattgggaaagaagcacatgcatgactgtatcataacatccttaaaaa
i nomLeu3.chr7b                C 0 I 1
s rheMac3.chr5                 183596562 232 + 184069350 caattacgaatgtaagtc------------------------------------------------------------------------------------ataagccacaatactatgaaccacacatgtga-tactgttccagtatgaattacagatattttcacatt--ag-taca--actttt--a--gttatctcaaaatatcatttatgatcactagctcttcaaatgtgcaacaatcatcatggccatagctgtc------tccc-cttacttaatgtgttaggaaagaagcacatgcgtgactgtgtcataacgtccttagaaa
i rheMac3.chr5                 C 0 I 1
s macFas5.chr5                 188980262 232 + 189454096 caattacgaatgtaagtc------------------------------------------------------------------------------------ataagccacaatactatgaaccacacatgtga-tactgttccagtatgaattacagatattttcacatt--ag-taca--actttt--a--gttatctcaaaatatcatttatgatcactagctcttcaaatgtgcaacaatcatcatggccatagctgtc------tccc-cttacttaatgtgttaggaaagaagcacatgcgtgactgtgtcgtaacgtccttagaaa
i macFas5.chr5                 C 0 I 1
s papAnu2.chr5                 178403308 232 + 178775436 CAATTACGAATGTAAGTC------------------------------------------------------------------------------------ATAAGCCACAATACTACGAACCACACATGTGA-TACTGTTCCAGTATGAATTACAGATATTTTCACATT--AG-TACA--ATTTTT--A--GTTATCTCAAAATATCATTTATGATCACTAGCTCTTCAAATGTGCAACAATCATCATGGCCATAGCTGTC------TCCC-CTTACTTAACGTGTTAGGAAAGAAGCACATGCGTGACTGTGTCATAACATCCTTAGAAA
i papAnu2.chr5                 C 0 I 1
s chlSab2.chr7                 135343280 228 + 135778131 caattacgaatgtaagtc------------------------------------------------------------------------------------ataagccacagtactacgaaccacacatgtga-taccgttccagtatgaattacagatattttcacatt--ag-taca--actttt--a--gttatctcagaatatcatttatgatcactagctcttcaaatgtgcaacgatcatcatggccatagctgtc------tccc-----cttaatgcatcaggaaagaagcacatgcgtgactgtgtcataacgtccttaaaaa
i chlSab2.chr7                 C 0 I 1
s calJac3.chr3                 190455856 235 - 190850796 caatgataaatgtaagtg------------------------------------------------------------------------------------ataaactacagcactactaaccatacatatga-ttttctttcaatatgaattacagatattttcatgtt--aattata--atttttaca--gttatgtgaaaataacatttatggtcaccagctcctcaaatttataataatcatcaaagtcagagctttt------tctg-tttacttaatgcattagaaaaggagcacatgcattactgcatcagaaCATCCTTAAAAA
i calJac3.chr3                 C 0 I 5226
s mm10.chr8                     87594247 323 - 129401213 catttgttcatggaggtctttatttcctcagctgaggctcccttcctctctgatgactctcgcttctttcaagttgacaagcaaccatccagtacaaatgtgctaaactacagaacgattag-cagacattaaagttttgttccaatataagttactgatattttcacatttcag-tgaagcacttcc--a--gttaactcaaattattacttatgatcattaactcttcaatgacacaataataatcaaactcaaagctgttacttaatctt-attacttaatctattagcaaaaaag---ataagtttctgcatcataacattctctaaag
i mm10.chr8                    I 105 I 1
s canFam3.chr16                 17890022 235 -  59632846 caatcatagacttaagtg------------------------------------------------------------------------------------gtaaaccatagtactattagcaatactcgcaa-ttttgttcgaaagtaaattacagatatctttgtgttacag-tata--gctgct--actgatatctcaaagtatcatttataatca-tagctcttcaaatttatagtaatcat-ataattccaactatt------tctcttttattttacatattgggaaagaaacaaatacattactgtatcacaatattctttaaaa
i canFam3.chr16                C 0 I 1

a score=285032.000000
s hg38.chr4_KI270925v1_alt        218703 91 +    555799 gtattga--ttagt--gtttgagcataattggcttcctctataatcacacgtgtgctagctgacgctttct-gaaatgtttttcttagatgtgact
s panTro4.chr4_GL389869_random     51511 88 -     69473 ---tgaa--ttagt--gtttgagcataattggcttcctctataatcaaacgtgtgctagctgacgctttct-gaaatgtttttcttagatgtgact
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3876128 90 -  23176937 gtattga--ttagt--gtttgagcataa-tggcttcctctataatcAAACTTGTGCTAGCTGACGTTTTCT-GAAATGTTTTTCTTAGATGTGACT
i ponAbe2.chr4_random          I 1 C 0
s nomLeu3.chr7b                113778616 91 + 115148730 gtattga--ttagt--gtttgagcatgattggcttcctctgtaatcaaacgtatgctagctgacgctttct-caaatgtttttcttagatgtgact
i nomLeu3.chr7b                I 1 C 0
s rheMac3.chr5                 183596795 90 + 184069350 gtattga--tcaac--gtttgagcatgattggcttgctctataatcAAAAATGTG-TAGCTGACACTTTCT-CAAATGTTTTTCTTAGATGCGACT
i rheMac3.chr5                 I 1 C 0
s macFas5.chr5                 188980495 90 + 189454096 gtattga--tcaac--gtttgagcatgattggcttgctctgtaatcAAAAATGTG-TAGCTGACACTTTCT-CAAATGTTTTTCTTAGATGCGACT
i macFas5.chr5                 I 1 C 0
s papAnu2.chr5                 178403541 90 + 178775436 GTATTGA--TCAAC--GTTTGAGCATGATTGGCTTGCTCTATAATCAAAAATGTG-TAGCTGACACTTTCT-CAAATGTTTTTCTTAGATGCGACT
i papAnu2.chr5                 I 1 C 0
s chlSab2.chr7                 135343509 90 + 135778131 gtattga--tcaac--gtttgagcatgattggcttcctctataatcAAACGTGTG-TAGCTGACACTTTCT-CAAATGTTTTTCTTAGATGCGACT
i chlSab2.chr7                 I 1 C 0
s calJac3.chr3                 190461317 91 - 190850796 GTATTAA--TTAAT--GTTTGAGCACGACTGGATTCCCCTGTAAGCAAACGTGTGCTACCTGCTGCTTTCT-CAAATGTTTTTCTTAGATGTGACT
i calJac3.chr3                 I 5226 C 0
s mm10.chr8                     87594571 90 - 129401213 gttttgattttaat--gagtgaacataactgacttctcttttaacca----tgtgtcagtttaaagttcttaaaaatattattcGCAAATGAGACt
i mm10.chr8                    I 1 I 460
s canFam3.chr16                 17890258 93 -  59632846 gttttaa--taaatacatgtggatataattcatttcctttgtaatcacacgtacattagcttatgcttttt-aaagtgtctttctgagacaggact
i canFam3.chr16                I 1 C 0

a score=71196.000000
s hg38.chr4_KI270925v1_alt        218794 26 +    555799 ttatcagactgccTATATGGTCCCCT
s panTro4.chr4_GL389869_random     51599 26 -     69473 ttatcagactgccTATATGGTCCCCT
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3876218 25 -  23176937 TTATCGGGCTGCCTATAT-GTCCCCT
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113778707 26 + 115148730 ttatcgcactgccaatatggcccCCT
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183596885 26 + 184069350 TTGTCAGGTTGCCAATATGGTCCCCT
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188980585 26 + 189454096 TTGTCAGGTTGCCAATATGGTCCCCT
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178403631 26 + 178775436 TTGTCAGGTTGCCAATATGGTCCCCT
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135343599 26 + 135778131 TTGTCAGGCTGCCGATTTGGTCCCCT
i chlSab2.chr7                 C 0 C 0
s calJac3.chr3                 190461408 26 - 190850796 TTATCGGACTGCCAGCGTGGTCCCCT
i calJac3.chr3                 C 0 C 0
s canFam3.chr16                 17890351 26 -  59632846 ttactagattgtcaaTAACCTCTCCT
i canFam3.chr16                C 0 C 0
e mm10.chr8                     87594661 460 - 129401213 I

a score=479406.000000
s hg38.chr4_KI270925v1_alt        218820 159 +    555799 ----TAGACAGTGCCTAAGGGCCATTTCCTTGAACATGGTGGAATTCTCAGCCTCCTGTCTCAGAAGCAGAGATGCCTAACTGGCTGGGATGCATTTCAAGGATAAGCAAA----AGCAGGAGAC-----TGGAGTAACTGCCGAATGGTGGGAGGTG--ACA---AC---TGGAAACAA
s panTro4.chr4_GL389869_random     51625 159 -     69473 ----TAGACAGTGCCTAAGGGCCATTTCCTTGAACATGGTGGAATTCTCAGCCTCCTGTCTCAGAAGCAGAGATGCCTAACTGGCTGGGATGCATTTCAAGGATAAGCAAG----AGCAGGAGAC-----TGGAGTAACTGCCATATGGTGGGAGGTG--ACA---AC---TGGAAACAA
i panTro4.chr4_GL389869_random C 0 C 0
s ponAbe2.chr4_random            3876243 159 -  23176937 ----TAGACAGTGCCTAAGGGCCATTTCCTTGAACATGGGGGAATTCTCAGCCTCCTGTCTCAGAAGCAGAGATGCCTAACTGGCTGGGATGCATTTCAACGATAAGCAAG----AGCAGGAGAC-----TGCAGTAACTGCCATGTGGTGGGAGGTG--ACA---AC---TGGAAACAA
i ponAbe2.chr4_random          C 0 C 0
s nomLeu3.chr7b                113778733 159 + 115148730 ----TAGACAGTGTCTAAGGGCCATTTCCTTGAACATGGTGGAATTCTCAGCCTCCTGTCTCAGAAGCAGAGATGCCTAACTGGCTGGGATGCCTTTCAAGAATAAGCAAG----AGCAGGAGAC-----TGGAGTAACTGCCACATGGTGGGAGGTG--ACA---AC---TAGAAACAA
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183596911 155 + 184069350 ----T----AGTGTCTAAGGGCCATTTCCTTGAACATGGTGGAATTCTCAGCCTCCTGTCTCAGAAGCAGAGATGCCGAACTGGCTGGGATGCATTTCAAGGACAAGCAAG----AGCAGGAGAT-----TGGAGTAACCGTCATAAGGCAGGAGGTG--ACA---AC---AACAAACAA
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188980611 155 + 189454096 ----T----AGTGTCTAAGGGCCATTTCCTTGAACATGGTGGAATTCTCAGCCTCCTGTCTCAGAAGCAGAGATGCCGAACTGGCTGGGATGCATTTCAAGGACAAGCAAG----AGCAGGAGAT-----TGGAGTAACCGTCATAAGGCAGGAGGTG--ACA---AC---AACAAACAA
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178403657 155 + 178775436 ----T----AGTGTCTAAGGGCCATTTCCTTGAACATGGTGGAATTCTCAGCCTCCTGTCTCAGAAGCAGAGATGCCGAACTGGCTGGGATGCATTTCAAGGACAAGCAAG----AGCAGGAGAT-----TGGAGTAACCGTCATAAGGCAGGAGGtg--aca---ac---aacaaacaa
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135343625 155 + 135778131 ----T----AGTGTCTAAGGGCCATTTCCTTGAACACGGTGGAATTCTCAGCCTCCTGTCTCAGAAGCAGAGATGCCGAACTGGCTGGGATGCATTTCAAGGACAAGCAAG----GGCAGGAGAT-----TGGAATAACTGTCATAAGGCAGGAGGTG--ACA---AC---AACAAACAA
i chlSab2.chr7                 C 0 C 0
s calJac3.chr3                 190461434 136 - 190850796 ----TAGACAGTGTCTAAGGGCCATTGCCTTGAACACGAGAGAA-TCTAAGCCCCCTTCCTC-----------------ACTGGCTGGGGTGCATTTCAAGGATAAGCAAG----AGCAGGAGAC-----TGCGGTGACAGCCACAC-GTGGGAGGTG--ACA---GC---GACAA----
i calJac3.chr3                 C 0 C 0
s mm10.chr8                     87595121 169 - 129401213 ----tagacattgtataa-ggtcactccctctgacattgtagcattctaactttTCCATGTCAAAATCAGAGATGCCTCACTGGCTAGGACACAGATTGAGGACGGACAAGTATAATTAGGAGACTTCCATAAGGTAACATCCAT---TTTGGAAGTGAAACA---ACCAATACAACCAA
i mm10.chr8                    I 460 C 0
s canFam3.chr16                 17890377 160 -  59632846 GGCCCTGACAGTGTC-AAGAGCCACTCCCAATAACATTGTAG-GCTCTAAATTTGC-ATCTCAGAACCAGAG--GCCCCACAGGCTGGGATGTCTACCAAGGACAAACAAT----AGCAAGTGAG-----TGATGTAAGTGCCATATGG-GGAAGACA--GCAGTGAC---CACAAACAA
i canFam3.chr16                C 0 C 0

a score=44589.000000
s hg38.chr4_KI270925v1_alt        218979 21 +    555799 CAGTGGTATTAAATTGATCCA
s panTro4.chr4_GL389869_random     51784 21 -     69473 CAGTGGTATTAAATTGATCCA
i panTro4.chr4_GL389869_random C 0 n 0
s nomLeu3.chr7b                113778892 21 + 115148730 CAGTGGTATTAAATTGATCCA
i nomLeu3.chr7b                C 0 C 0
s rheMac3.chr5                 183597066 21 + 184069350 CAGTGGCATTAAAATGACCCG
i rheMac3.chr5                 C 0 C 0
s macFas5.chr5                 188980766 21 + 189454096 CAGTGGCATTAAAATGACCCG
i macFas5.chr5                 C 0 C 0
s papAnu2.chr5                 178403812 21 + 178775436 cagtGGCATTAAAATGACCCG
i papAnu2.chr5                 C 0 C 0
s chlSab2.chr7                 135343780 21 + 135778131 CAGTGGCATTAAAATGACCCG
i chlSab2.chr7                 C 0 C 0
s calJac3.chr3                 190461570 21 - 190850796 CAATGGCACTGGAATGGACTG
i calJac3.chr3                 C 0 C 0
s mm10.chr8                     87595290 21 - 129401213 TAGTGAAGCTGGGATTCACAG
i mm10.chr8                    C 0 C 0
s canFam3.chr16                 17890537 21 -  59632846 AAATGGCACTGGAATCCACTG
i canFam3.chr16                C 0 C 0
e ponAbe2.chr4_random            3876402  0 -  23176937 C

a score=51241.000000
s hg38.chr4_KI270925v1_alt    219000 25 +    555799 AATGCAGCCTCAGGGCATGTTAGTA-
s panTro4.chr4             192912790 25 + 193495092 AATGCAGCTTCAGGGCATGTTAGTA-
i panTro4.chr4             M 14167 I 28
s nomLeu3.chr7b            113778913 25 + 115148730 AATGCAGCTTCAGGGTACGTGGGTA-
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183597087 25 + 184069350 AATGCAGCTTCAGGGCCTGTGGGTA-
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188980787 25 + 189454096 AATGCAGCTTCAGGGCCTGTGGGTA-
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178403833 25 + 178775436 AATGCAGCTTCAGGGCCTGTGGGTA-
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135343801 25 + 135778131 AATGCAGCTTCAGGGCATGTGGGTA-
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190461591 25 - 190850796 AACCCAGCTTCAGGGCATGTGGGTG-
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87595311 25 - 129401213 GGTGCAAACTTAAACCAATGGGCTG-
i mm10.chr8                C 0 C 0
s canFam3.chr16             17890558 26 -  59632846 AGTGCAATATCAGGTCTTCCGGCACA
i canFam3.chr16            C 0 C 0
e ponAbe2.chr4_random        3876402  0 -  23176937 C

a score=81060.000000
s hg38.chr4_KI270925v1_alt    219025 36 +    555799 ACTAGGAAATACTAAGAGGGAACAGAGTAAGATGGA
s nomLeu3.chr7b            113778938 36 + 115148730 ACTAGGAAATACTGAGAGGGAACAGAGTAAGATGGA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183597112 36 + 184069350 ACTAGGAAATGCTAAGAGGGAATCGAGTAAGATGGA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188980812 36 + 189454096 ACTAGGAAATGCTAAGAGGGAATCGAGTAAGATGGA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178403858 36 + 178775436 ACTAGGAAATGCTAAGAGGGAATCGAGTAAGATGGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135343826 36 + 135778131 ACTAGGAAATGCTAAGAGGGAATCGAGTAAGATGAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190461616 36 - 190850796 ACTAGGAAATGCTAAGAGGGAGCAGAGTAAGATGGA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87595336 36 - 129401213 ACCAGAAAATGCCAAGAGAAAACAAAGTAAGACAGA
i mm10.chr8                C 0 C 0
s canFam3.chr16             17890584 15 -  59632846 ACTAGGAAATGCTAA---------------------
i canFam3.chr16            C 0 C 0
e ponAbe2.chr4_random        3876402  0 -  23176937 C
e panTro4.chr4             192912815 28 + 193495092 I

a score=53315.000000
s hg38.chr4_KI270925v1_alt    219061 18 +    555799 ACAACTCAGATCATCAGT
s panTro4.chr4             192912843 18 + 193495092 ACAACTCAGATCATCAGT
i panTro4.chr4             I 28 C 0
s nomLeu3.chr7b            113778974 18 + 115148730 ACAACTCAGATCATCAAT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183597148 18 + 184069350 ACAACTCAGACCATCAGT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188980848 18 + 189454096 ACAACTCAGATCATCAGT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178403894 18 + 178775436 ACAACTCAGATCATCAGT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135343862 18 + 135778131 ACAACTCACATCATCAGA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190461652 18 - 190850796 ACAACTCAGATCATCCGT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87595372 18 - 129401213 CTAACTCAGAAAACCAGT
i mm10.chr8                C 0 C 0
s canFam3.chr16             17890599 15 -  59632846 ---AGCTAGATCATCAGT
i canFam3.chr16            C 0 C 0
e ponAbe2.chr4_random        3876402  0 -  23176937 C

a score=87285.000000
s hg38.chr4_KI270925v1_alt    219079 39 +    555799 AAGAAATGCCTGGCCAGggccaggtgtggtggctcatgc
s panTro4.chr4             192912861 37 + 193495092 AAGAAATGCCTGGCCAGGGCCAGG-GTg-tggcttatgt
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113778992 39 + 115148730 AAGAAATGCCTGGCCAGggccaggtgtggtggctcatgc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183597166 39 + 184069350 AAGAAATGCCTGGCCAGggccaggcgtggtggctcatgc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188980866 39 + 189454096 AAGAAATGCCTGGCCAGggccaggcgtggtggctcatgc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178403912 39 + 178775436 AAGAAATGCCTGgccagggccaggcgtggtggctcatgc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135343880 39 + 135778131 AAGAAATGCCTGGCCAGggccaggcgtggtggctcatgc
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190461670 39 - 190850796 AGGAGCTGCTTAGCCAGggccaggtgcgatggttcatgc
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87595390  0 - 129401213 C
e canFam3.chr16             17890614  0 -  59632846 C
e ponAbe2.chr4_random        3876402  0 -  23176937 C

a score=550720.000000
s hg38.chr4_KI270925v1_alt    219118 229 +    555799 ctgtaatcccagcactttgggacgtcgaggcatgcggatcatttgaggtcaggagttcaagaccagcctggccaatatggtcaaactccatctctactaaacatacaaaagttgaacccgggaggcagaggttgcagtgagctgagatcatgccactgcactccagcctgggccac-agaatgagactccatctcaaaaacaaaaaagaaagaaaAAAAGAAAACAAAAA
s panTro4.chr4             192912898 228 + 193495092 ctgta-tcccagcactttgggacgtcgaggcgtgcggatcatttgaggtcaggagttcaagaccagcctggccaatatggtcaaactccatctctactaaacatacaaaagttgaacccgggaggcagaggttgcagtgagctgagatcatgccactgcactccagcctgggccac-agagtgagactccatctcaaaaacaaaaaagaaagaaaaaaagaaaacaaaaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4_random        3876402 212 -  23176937 ctgtaatcccagcactttgggacgtcgaggcgtgcggatcatttgagatcaggagttcaagaccagcctggccaatatggtcaaactccatctctactaaacatacaaaagttgaacccgggaggcagaggttgcagtgagctgagatcatgccactgcactccagcctgggccac-agagtgagactccatctcaaaaa------------aaaaaaaaaaaaC-----
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113779031 225 + 115148730 ctgtaatcccagcactttgggaggtcaaggcatgcggatcatttgaggtcaagagttcaagaccagcctggctaatacggtcaaactccatctctactaaacatacaaaagttgaacccgggaggcagaggttgcagtgagctgagatcatgccactgcactccagcctgggccac-agagtgagactctatctcaaaaa----aaaaagaaaagaaaaGAAAAGAAAAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183597205 217 + 184069350 ctgtcataccagcactttggaaggtcgaggaatgcagatcatttgaggtcaggagattgagaccagcctggccaacacagtcaatctccatttctactaaacacacaaaagttgaacccgggaggcagaggttgtagtgagctgagatcgcgccattgtgctctagcctgggccaa-aaggggagactctgtcaaacaaa------------aaaaaaaaaaaaaAGAGG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188980905 212 + 189454096 ctgtcatcccagcactttggaaggtcgaggaatgcagatcatttgaggtcaggagattgagaccagcctggccaacacagtcaatctccatttctactaaacacacaaaagttgaacccgggaggcagaggttgtagtgagctgagatcgcgccattgtactctagcctgggccac-aaggtgagactctgtc-----aa------------aaaaaaaaaaaaaagaaG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178403951 206 + 178775436 ctgtcatcccagcactttggaaggtcgaggaatgcagatcatttgaggtcaggagattgagaccagcctggccaacacagtcaatctccatttctactaaacatacaaaagttgaacccgggaggcagaggttgtagtgagctgagatcgcgccattgtactctagcctgggccac-aaggtgagactctgtc-----------------------aaaaaaaaaaaaag
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135343919 208 + 135778131 ctgtcatcccagcactttagaaggtcgaggaatgcggatcatttgaggtcaggagtttaagaccagcctggccaacatggccagtctccatctctactaaacatacaaaagttgaacccgggaggcagaggttgtagtgagctgagatcgcgccattgcaccccggcctgggccac-aaggtgaga--ctgtc-------------------aaaaaaaaaaaaaaaaga
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190461709 229 - 190850796 ccgtcattccagcactttgggaggttgaggcatgtggatcatttgaagtcaggaattctagaccagcctggccaacatggtgaaac-ccatctttactaaaaatacaaaaattgaacccaggaggtgaaggttgcagtgagccaagatcatgccattgcactccagcctgagtgacaagagagagactccatctcaaagaaaagaaagaaagagaaagaaaaagaaagaa
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87595390   0 - 129401213 C
e canFam3.chr16             17890614   0 -  59632846 C

a score=-1460.000000
s hg38.chr4_KI270925v1_alt    219347 1 +    555799 G
s panTro4.chr4             192913126 1 + 193495092 c
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4_random        3876614 1 -  23176937 C
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113779256 1 + 115148730 C
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183597422 1 + 184069350 A
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188981117 1 + 189454096 A
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178404157 1 + 178775436 a
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135344127 1 + 135778131 a
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190461938 1 - 190850796 a
i calJac3.chr3             C 0 I 190
s canFam3.chr16             17890614 1 -  59632846 G
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87595390 0 - 129401213 C

a score=2090945.000000
s hg38.chr4_KI270925v1_alt    219348 687 +    555799  
s panTro4.chr4             192913127 685 + 193495092  
i panTro4.chr4             C 0 M 788
s ponAbe2.chr4_random        3876615 691 -  23176937  
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113779257 675 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183597423 706 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188981118 707 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178404158 708 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135344128 709 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190462129 675 - 190850796  
i calJac3.chr3             I 190 C 0
s mm10.chr8                 87595390 614 - 129401213  
i mm10.chr8                C 0 C 0
s canFam3.chr16             17890615 719 -  59632846  
i canFam3.chr16            C 0 C 0

a score=40630.000000
s hg38.chr4_KI270925v1_alt    220035 18 +    555799 CTACATACTACAGCTCAG
s ponAbe2.chr4_random        3877306 18 -  23176937 CTATGTACTGCAGCTCAG
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113779932 18 + 115148730 CTACGTACTGCAGCTCAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183598129 18 + 184069350 CTAGCTACTGCAGCTCAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188981825 18 + 189454096 CTAGCTACTGCAGCTCAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178404866 18 + 178775436 CTAGCTACTGCAGCTCAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135344837 18 + 135778131 CTAGCTACTGCAGCTCAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190462804 18 - 190850796 CTCCCTACTGCAGCTCAG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87596004 18 - 129401213 TTACCTGCTCCTTCTCAG
i mm10.chr8                C 0 I 849
s canFam3.chr16             17891334 17 -  59632846 ACATCTACTCTATCTAG-
i canFam3.chr16            C 0 C 0
e panTro4.chr4             192913812 788 + 193495092 M

a score=147170.000000
s hg38.chr4_KI270925v1_alt    220053 60 +    555799 CCCCAG---CAGGTGCAGGACGCTGTATGTGGGTAAAAGACTAGTTATGTGTTCAAAATACAG
s ponAbe2.chr4_random        3877324 60 -  23176937 CCCCAG---CAAGTGCAGGACCCTGTATGTGGGTAAAAGACTAGTTATGTGTTCAAAATACAG
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113779950 60 + 115148730 CCCCAG---CAGGTGCAGGATCCTGTATGTGGGTAAAAGACTAGTCATGTGTTCAAAATACAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183598147 57 + 184069350 CCCCAG------GTGCAGGACCCTGTGTGTGGATAAAAGACTAGTCATGTGTTCAAAATACAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188981843 57 + 189454096 CCCCAG------GTGCAGGACCCTGTGTGTGGATAAAAGCCTAGTCATGTGTTCAAAATACAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178404884 57 + 178775436 CCCCAG------GTGCAGTACCCTGTGTGTGGATAAAAGACTAGTCATGTGTTCAAAATACAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135344855 57 + 135778131 CCCCAG------GTGCAGGACCCTGTGTGTGGATAAAAGACTAGTCATGTGTTCAAAATACAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190462822 57 - 190850796 CCCCAG------GTGCAGGACCCTGTATGTGGGTAAAAGACTAGTCATGTGTTCAAAATACAG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17891351 61 -  59632846 -CCCAGGCATATGGGCAGGGTCCTGCACATGGGT-AAAGACCAGAAATGAGTTAAGAGTAGGG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87596022 849 - 129401213 I
e panTro4.chr4             192913812 788 + 193495092 M

a score=761909.000000
s hg38.chr4_KI270925v1_alt    220113 340 +    555799 TGATGAAGAGGCCAATGAGAAGGT-----------------GGTTGTAAATGAAGAGATAAAGAG---CATGGTGCAAT-AAAGGGTGATAGGATCCTCTCTCAGCCAT--------------------------CACAC-AATTTGCTT-TCTTCAGCCAGCTCCGTCAAAAGTA------TCCCCTATTAGAAACTCTGTCCCCTT-AGAGAGTAGTTTGTTGAAGGTTTCTAACAGAAAAAGACAAGCCTCGGACAC--------TAGCAGTCCTGCAGGAAACAGTTGTATTCAAAGCAGACATGAAAACCCTGTA----TCGT------G--TGATGCACTGCCAATGCAACAGCACCTTCAAGCACTAACTTCGATAGACCCTCAGCCTCTGGGATGACCTGGCATTTCC
s ponAbe2.chr4_random        3877384 340 -  23176937 TGATGAAGAGGCCAGTGAGAAGGT-----------------GGCTGTAAATGAAGAGATAAAGAG---CATGGTGCAAT-AAAGGGTGATAGGATCCTCTGTCAGCCAT--------------------------CACAC-AATTTGCTT-TCTTCAGCCAGCTCCATCAAAAGTA------TCCCCTATTAGAAACGCTGTCCCCTC-AGAGAGTAGTTTGTTGAAGGTTTCTAACAGAAAAAGAAAAGGCTCGGACAC--------TAGCAACCCTGCAGGAAACAGCTGTATTCAAAGCAAATGTGAGAACTCTGTA----TCGT------G--TGATGCACTGTCAATGCAACAGCACCTTCAAGCACTAACTTCGATAGACCCTCAGCCTCTGGGATGACCTGGCATTTCC
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113780010 339 + 115148730 TGATGAAGAGGCCAAAGACAAGGT-----------------GGTTGTAAATGAAGAGATAAAGAG---CATGGTGCAAT-AAAGGGTGAGAGGATCCTCTCTCAGCCAT--------------------------CACAA-AATTTGCTT-TCTTCAGCCAGCTCCATCAAAC-TA------TCCCCTATTAGAAACGTTGTCCCCTT-AGAGAGTAGTTTGTTGAAGGTTTCTAACAGAGAAAGAAAAGGCTCAGACAC--------TAGCAGCCCTGCAGGAAACAGTTGTATTCAAAGCAGACGTGAAAACCCTGTA----TCAT------G--TGATGCACTGTCAACGCAACTGCACCTTCAAGCACTAACTTCGATAGATCCTCAGCCTCTGGGATGACCTGGCATTTCC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183598204 329 + 184069350 TGATGAAGAGGCCAATGAGAAGGT-----------------GGTTGTAAACGACGAGATGAAGA----------GCGAT-AAAGGGTGATAGGATGCTCTATCAGCCAT--------------------------CACAC-AATTTGCTT-TCTTCAGCCAGCTCCATCCAA--TA------GCCCCTATTAGAAACACTGTCCCCTT-AGAGAGTAGTTTGTTGAAGGCGTCGAACAGAGAAAGAAAAGGCTCAGACAC--------GAGCAGCCCT-CAGGAAACAGTTGTATTCAAAGCAGATGTGAAAACCCTGCA----TCGT------G--TGAGACACTGTCAATGCAATGGCACC-TCAAGCACTAACTTCCATAGACCCTCAGTCTCTGGGATGACCTGGCATTTCC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188981900 329 + 189454096 TGATGAAGAGGCCAATGAGAAGGT-----------------GGTTGTAAACGACGAGATGAAGA----------GCGAT-AAAGGGTGATAGGATGCTCTCTCAGCCAT--------------------------CACAC-AATTTGCTT-TCTTCAGCCAGCTCCATCCAA--TA------GCCCCTATTAGAAACACTGTCCCCTT-AGAGAGTAGTTTGTTGAAGGCGTCGAACAGAGAAAGAAAAGGCTCAGACAC--------GAGCAGCCCT-CAGGAAACAGTTGTATTCAAAGCAGATGTGAAAACCCTGCA----TCGT------G--TGAGACACTGTCAATGCAATGGCACC-TCAAGCACTAACTTCCATAGACCCTCAGTCTCTGGGATGACCTGGCATTTCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178404941 329 + 178775436 TGATGAAGAGGCCAATGAGAAGGT-----------------GGTTGTAAACGACGAGATGAAGA----------GCGAC-AAAGGGTGACAGGATGCTCTCTCAGCCAT--------------------------CACAC-AATTTGCTT-TCTTCAGCCGGCTCCATCCAA--TA------TCCCCTATTAGAAACACTGTCCCCTT-AGAAAGTAGTTTGTTGAAGGCGtcgaacagagaaagaaaaggctcAGACAC--------GAGCAGCCCT-CAGGAAACAGTTGTATTCAAAGCAGATGTGAAAACCCTGCA----TCGT------G--TGAGACACTGTCAATGCAATGGCACC-TCAAGCACTAACTTCCATAGACCCTCAGTCTCTGGGATGACCTGGCATTTCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135344912 331 + 135778131 TGATGAAGAGGCCAATGAGAAGGT-----------------GGTTGTAAACGACGAGAGGAAGA----------GTGAC-AAAGGGTGATAGGATGTTCTCTCAGCCAT--------------------------CACAC-AATTTGCTT-TCTTCAGCCAGCTCCATCCAAAGTA------TCCCCTATTAGAAACACTGTCTGCTT-AGAAAGTAGTTTGTTGAGGGTTTTTAACAGAGAAAGAAAAGGCTCAGACAC--------GAGCAGCCCT-CAGGAAACAGTTGTATTCAAAGCAGATGTGAAAACCCTGCA----TTGT------G--TGAGGCACTGTCAATGCAACGGCACC-TCAAGCACTAACTTCCATAGACCCTCAGTCTCTGGGATGACCTGGCATTTCC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190462879 337 - 190850796 CGATGAAGAGGCCAGTGAGAAGTC-----------------CGCTGTAAG-GAAGAGAGAAAGAG---CCTGGAGCCAC--AGGGGTGACAGGGTGCTGTTTCAGCCAT--------------------------CGCAG-AG-TTGCTC-TCTGCAGCCAGCTCCATCAAAAGAA------TCCC--ATTAGAAACACTGTCCCCTT-GGAGAGCAGTTTGCTGCAGGCTTCTAACAGAGCAAGAAAAGGCTCAGACAC--------CAGTAGCCCTGCAGGAAACAGCTGTATTCAAAGCAGATGTGAAAACCCTGCA----TTGT------GGTCTGGGCACTGTCAAAGCAACAGCACCGTGAAGCACTAATTTAGGTGGATCCTCAGCTTCTGGGATGAGCTGGTGTCTCC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87596871 358 - 129401213 TGATGAAGAGGTCAACAAGAAAGC-----------------AGTTTAAGAGCATGAAACAGGGAT---ATTAGTGAGACAAAAAGATGGTATGACATTGTCACAGTTAT--------------------------AAAAAGAAATTACTC-CCCTCCGTCAATTATATGAAAGGTAATTCTTTACCCTACCAAAAATAGTATCCCTTTGGGGGAGTGGTTAGATAAAGGCTTTTAAT-----AAGGAGAAATTCAGACACATAGAAAATAGCAACTCTAAGGGAAACTAATAGACTCAAAGCAGAATTAAAAGTTCTACA----TCCTTGGTTGA--TAGATCATTGTCTACTCAATAGAATCTGTGAAGATTAATTTAGACGGATGCTTGAGCTATGGAATGTACCAGCATTCCC
i mm10.chr8                I 849 I 334
s canFam3.chr16             17891412 360 -  59632846 TGATCAAGAGGCCAGTGAGAAGGCCTTTGCCTTCAAAATTGGGTGGTTGATCAAGGGGCATGGAGAATCACAGTTAGAC-AAGAGGTGATAGGATATTGTCAAAGACATATTGGTTAAGACATAAAAAGTAAGACAAAAA-AACCTGCTTCCCCTCATATGGTTACATAAAAGGTA------CAGCCTATTAAAAATAATGTCTCCTT-GGGAAATAATTCAC-------------------ATGGAAAAGTTCAAACATACAG----AGGCTGTCCTGAAGGAA-----------CACAGGAT-TGTAAAAATCCCACACTCCTTGT---------TGACACGTTATCTATGCAACGGCACCTGCAAATGGAGACCCAGAGA---CTTCAGACTCTGGAACGATCTGGCACCTCC
i canFam3.chr16            C 0 C 0
e panTro4.chr4             192913812 788 + 193495092 M

a score=18828.000000
s hg38.chr4_KI270925v1_alt    220453 6 +    555799 CTCTAG
s ponAbe2.chr4_random        3877724 6 -  23176937 CTCTAC
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113780349 6 + 115148730 CTCTAC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183598533 6 + 184069350 CTCTAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188982229 6 + 189454096 CTCTAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178405270 6 + 178775436 CTCTAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135345243 6 + 135778131 CTCTAC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190463216 6 - 190850796 CTCTAC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17891772 6 -  59632846 CTCTAC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87597229 334 - 129401213 I
e panTro4.chr4             192913812 788 + 193495092 M

a score=900884.000000
s hg38.chr4_KI270925v1_alt    220459 360 +    555799  
s ponAbe2.chr4_random        3877730 360 -  23176937  
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113780355 358 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183598539 344 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188982235 344 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178405276 344 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135345249 360 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190463222 355 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87597563 450 - 129401213  
i mm10.chr8                I 334 I 3
s canFam3.chr16             17891778 474 -  59632846  
i canFam3.chr16            C 0 C 0
e panTro4.chr4             192913812 788 + 193495092 M

a score=505552.000000
s hg38.chr4_KI270925v1_alt    220819 172 +    555799 TCACTAGATAATA---CCACTTGGAGGATACCAGGAATTAGTATTTTTTTGACCACATAAGTGCCAAGCTTCGAGCTA-GGTGCTTTGTATCCAA--------------CATC--TCATCTGTTGGTAACACT-ACCAACAATTCAG------------------Ctcaaagaatcacactgtcagagctggaagggtcctcagagatcat
s panTro4.chr4             192914600 172 + 193495092 TCACTAGATAATA---CCACTGGGAGGATACCAGGAATTAGTATTTTTTTGACCACATAAGTGCCAAGCTTCGAGCTA-GGTGCTTTGTATCCAA--------------CATC--TCATCTGTTGGTAACACT-ACCAACAATTCAG------------------CTCAAagaatcacactgtcagagctggaagggtcctcagagatcat
i panTro4.chr4             M 788 C 0
s ponAbe2.chr4_random        3878090 177 -  23176937 TCACTAGATAATA---CCATTGGGAGGATATCAGGAATTAGTATTTTTTTGACCACATAAgtgccaagcttcgagcta-ggtgctttgtatccaacatc---------tcatc--tcatcTGTTGGTAACACT-ACCAACAATTCAG------------------Ctcaaagaatcgcattgtcagcgctggaagtgtcctcagagatcat
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113780713 177 + 115148730 TCACTAGATAATG---CCACTGGGAAGATACTAGGAATTAGTATttttttgagcacataagtgccaagcttcgagcta-ggtgctttgtattgaacatc---------tcatc--tcatcTGTTGGTATCACT-ACCAACAATTCGG------------------Ctcaaagaatcgcattgtcagaactggaagggtcctcagagatcat
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183598883 169 + 184069350 TCACTAGATAATG---CCACTGGGAGGATACTAGgaattagta-ttttttgaccacataagtgccaagcttcgagcta-ggtgcttcgtatgcaacgtc---------tcatc--tcatctgttggta--------caacaattcgg------------------cTCAAagaatcgcactgtcagagctggaagggtcctcagagatcat
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188982579 169 + 189454096 TCACTAGATAATG---CCACTGGGAGGATACTAGgaattagta-ttttttgaccacataagtgccaagcttcgagcta-ggtgcttcgtatgcaacgtc---------tcatc--tcatctgttggta--------caacaattcgg------------------cTCAAagaatcgcactgtcagagctggaagggtcctcagagatcat
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178405620 169 + 178775436 TCACTAGATAATG---CCACTGGGAGGATACTAGGAATTAGTA-TTTTTTGACCACATAAGTGCCAAGCTTCGAGCTA-GGTGCTTCGTATGCAACGTC---------TCATC--TCATCTGTTGGTA--------CAACAATTCGG------------------CTCAAAGAATCGCACTGTCAGAGCTGGAAGGGTCCTCAGAGATCAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135345609 170 + 135778131 TCACTAGATAATG---CCACTGGGAGGATACTAGGAATTAGTATTTTTTTGACCACATAAGTGCCAAGCTTCGAGCTA-GGTGCTTCGTATGCAACGTC---------TCATC--TCATCTGTTGGTA--------CAACAATTCGG------------------TTCAAagaatcgcactgtcagagctggaagggtcctcagagatcat
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190463577 167 - 190850796 TCACTAGATAATG---CCACGGGGAGGGTACTAGGAATTGGTA-TTTATTGACCACCTAAGTGCCAACCTTCCAGATG-GGTGCTTTGTATGCAACTTC---------TCATC----------TGGTAGCACT-TCCAACAGTCCGG------------------CTCACTGAATGACACCgtcagagccggaag-gtcctcagagatcat
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87598016 176 - 129401213 TTATTAGATGATGGTCATGCCTGGAGAGTAAGATAAGGTGATA-TTTATTGATTACCTATTCATTAAGCTTCTACAT--GTTGGTTTACATATAACACCAAGCTAGAATCACTAACCATTCATTTGGG--------CAGTAA--AGA------------------CTAACAGAATTACCTCAtcagagctaca----ttcttgaagagtac
i mm10.chr8                I 3 C 0
s canFam3.chr16             17892252 186 -  59632846 TCCTTAGACAATG---CCATTAACAAGGTGACAGGAATTGATA--CTCATGGACACCTAACTGCCATACTCCTAGATAGGGTTTTTTACATGCAACATT---------GAATC----------TGGTAGCACTAACCAACAATCTGGTGAATAAGATGGTAACAACtcacagaatcacattgtgagagttggg-gggtactcagagatcgt
i canFam3.chr16            C 0 I 18

a score=75152.000000
s hg38.chr4_KI270925v1_alt    220991 26 +    555799 caagtccaaactgttcattt-gcatgt
s panTro4.chr4             192914772 26 + 193495092 caggtccaAACTGTTCATTT-GTATGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4_random        3878267 26 -  23176937 caggtccaaactgttcattt-gcatgt
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113780890 26 + 115148730 caggtccaaactgtttattt-gcatgt
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183599052 26 + 184069350 cagatccaAACTGTTCATTT-GCATGT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188982748 26 + 189454096 cagatccaAACTGTTCATTT-GCATGT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178405789 26 + 178775436 CAGATCCAAACTGTTCATTT-GCATGT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135345779 26 + 135778131 cagatccaAACTGTTCATTT-GCATGT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190463744 25 - 190850796 ccaatcc-aactgttcattt-gcatgt
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87598192 27 - 129401213 atggttgatatccctcatttaacacat
i mm10.chr8                C 0 C 0
e canFam3.chr16             17892438 18 -  59632846 I

a score=199003.000000
s hg38.chr4_KI270925v1_alt    221017 101 +    555799 gaaaaacctgagaccATggcaggacacagtggctcacacctgtaatcccagca--ctttgggaggcc-aggagggcggatcatgaggtcaggagttcaagacca
s panTro4.chr4             192914798 101 + 193495092 GAAAAACCTGAGACCATggcaggacacagtggctcacacctgtaatcccagca--ctttgggaggcc-aggagggcggatcatgaggtcaggagttcgagacca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4_random        3878293 101 -  23176937 gaaaaacctgagaccGTggcaggacacagtggctcacacctgtaatcccagca--ctttgggagacc-acgagggcggatcatgaggtcaggagttcgagacca
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113780916 101 + 115148730 gaaaaacctgagacccTggcaggacgcggtggctcacacctgtaatcccagca--ctttgggaggcc-aggagggcagatcatgaagtcaggagttcgagacca
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183599078  88 + 184069350 GAAAAACCTGAg--------------cggtggctcacgtttgtaatcccagca--ctttgggaggccgaggagggcaggtcacgaggtcaggagttcgagacca
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188982774  88 + 189454096 GAAAAACCTGAg--------------cggtggctcacgtttgtaatcccagca--ctttgggaggccgaggagggcaggtcacgaggtcaggagtttgagacca
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178405815  88 + 178775436 GAAAAACCTgag--------------cggtggctcacgtttgtaatcccagca--ctttgggaggccgaggagagcaggtcacgaggtcaggagttcgagacca
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135345805  88 + 135778131 GAAAAACCTGAg--------------cggtggctcacgcttgtaatcccagca--ctttgggaggccgaggagggcaggtcatgaggtcaggagttcaagacca
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87598219  90 - 129401213 aaagaaactaaggctaaagaAACATAAGTTGGTTAAA---TATGAATTAAACATTCTTTGgga-acc-agagtgatggctc---------ggtatttaagagca
i mm10.chr8                C 0 I 139
e canFam3.chr16             17892438  18 -  59632846 I
e calJac3.chr3             190463769   0 - 190850796 C

a score=414175.000000
s hg38.chr4_KI270925v1_alt    221118 182 +    555799 gcctgaccaatgtggtgaaaccccatctttcctaaaaacacaaaaattagctgggc-------------------atcccagctactcaggaggctgaggcaggagaatcttttgaacccgggaggcagatgttgcagtgagccgagatcgtgtcacagcactccagcctggtgaaagagcaagactccatctcaaaaaaa
s panTro4.chr4             192914899 182 + 193495092 gcctgaccaatgtggtgaaaccccatctttcctaaaaacacaaaaattagctgggc-------------------atcacagctactcaggaggctgaggcaggagaatcttttgaacccgggaggcagatgttgcagtgagccaagatcgcgtcacagcactccagcctggcgaaagagcaagactccatctcaaaaaaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4_random        3878394 182 -  23176937 gcctgatcaatgtggtgaaaccccatctttcctaaaaacacaaaaattagctgggc-------------------atcccagctactcaggaagctgaggcaggagaatcttttgaacccgggaggcagatgttgcagtgagccgagatcacgtcacagcactctagcctggcgaaagagcaagactccatctcaaaaaaa
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113781017 181 + 115148730 gactgaccaatatggtgaaaccccatctttactaaaaatac-aaaattagctgggc-------------------atcccagctacttaagaggctgaggcaggagtattgtttgaacccgggaggcggatgttgcagtgagctaagatttcgtcacagcactccagcctggcaacagagcaagactccatctcaaaaaaa
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183599166 200 + 184069350 gcctgaccaacatgg-gaaacccagtctctactaaaaatataaaaatcagctgggcgtggtggctcatgcctgaaatcccagctactcaggaggctgaggcaggagaatcatttgaacctgggaggcagatgttgcagtgagctgagatcgcatcacagcactccagcttggcgacagagcaagactccatctcaaaaaaa
i rheMac3.chr5             C 0 I 135
s macFas5.chr5             188982862 200 + 189454096 gcctgaccaacatgg-gaaacccaatctctactaaaaatataaaaatcagctgggcgtggtggctcatgcctgaaatcccagctactcaggaggctgaggcaggagaatcatttgaacctgggaggcagatgttgcagtgagctgagatcgcatcacagcactccagcttggcgacagagcaagactccatctcaaaaaaa
i macFas5.chr5             C 0 I 14
s papAnu2.chr5             178405903 201 + 178775436 gcctgaccaacatggtgaaacccaatctctactaaaaatataaaaatcagctgggcgtggtggctcatgcctgaaatcccagctactcaggaggctgaggcaggagaatcatttgaacctgggaggcagatgttgcagtgagctgagatcgcgtcacagcactccagcttggcaacagagcaagactccatctcaaaaaaa
i papAnu2.chr5             C 0 I 12
s chlSab2.chr7             135345893 201 + 135778131 gcctgaccaacatggtgaaacccaatctctactaaaaatataaaaatcagctgggcgtggtggctcatgcctgaaatcccagctcctcaggaggctgaggcaggagaatcgtttgaacctgggaggcagatgttgcagtgagctgagatcacaccacagcactccagcttggcgacagagcaagactccatttcgaaaaaa
i chlSab2.chr7             C 0 I 1
e mm10.chr8                 87598309 139 - 129401213 I
e canFam3.chr16             17892438  18 -  59632846 I
e calJac3.chr3             190463769   0 - 190850796 C

a score=4727.000000
s hg38.chr4_KI270925v1_alt    221300  7 +    555799 aaaaaa-----------g
s panTro4.chr4             192915081 18 + 193495092 aaaaaaaaaaaaaaaaag
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4_random        3878576  9 -  23176937 aaaaaa---------aag
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113781198 10 + 115148730 aaaaaa--------aaag
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183599501  7 + 184069350 AAAAAA-----------A
i rheMac3.chr5             I 135 C 0
s macFas5.chr5             188983076  7 + 189454096 aaaaaa-----------a
i macFas5.chr5             I 14 C 0
s papAnu2.chr5             178406116  7 + 178775436 aagaaa-----------a
i papAnu2.chr5             I 12 C 0
s chlSab2.chr7             135346095  7 + 135778131 gaaaaa-----------a
i chlSab2.chr7             I 1 C 0
e mm10.chr8                 87598309 139 - 129401213 I
e canFam3.chr16             17892438 18 -  59632846 I
e calJac3.chr3             190463769  0 - 190850796 C

a score=105378.000000
s hg38.chr4_KI270925v1_alt    221307 31 +    555799 gaaaaaCCTGAGACCAAGAGAAGATAAGTAG
s panTro4.chr4             192915099 31 + 193495092 gaaaaACCTGAGACTAAGAGAAGATAAGTAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4_random        3878585 31 -  23176937 gaaaaaCCTGAGACCAAGAGAAGAtaagcag
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113781208 31 + 115148730 gaaaaaCCTGAGACCAAGAGAAGAtaagtag
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183599508 31 + 184069350 GAAAAACCTGAGACCAAGAGAAGAGAAGCAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188983083 31 + 189454096 GAAAAACCTGAGACCAAGAGAAGAGAAGCAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178406123 31 + 178775436 gaaaaacctgagaccaagagaagagaagcag
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135346102 31 + 135778131 gaaaaaCCTGAGACCAAGAGATGAGAAGCAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190463769 31 - 190850796 gaaaaacctgagaccaagagaACGCAGGTAG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17892456 31 -  59632846 gagaaaattgaggccaagcgaggagaagAAA
i canFam3.chr16            I 18 C 0
e mm10.chr8                 87598309 139 - 129401213 I

a score=2292032.000000
s hg38.chr4_KI270925v1_alt    221338 717 +    555799  
s panTro4.chr4             192915130 719 + 193495092  
i panTro4.chr4             C 0 I 36
s ponAbe2.chr4_random        3878616 719 -  23176937  
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113781239 721 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183599539 709 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188983114 711 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178406154 709 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135346133 711 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190463800 695 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87598448 618 - 129401213  
i mm10.chr8                I 139 C 0
s canFam3.chr16             17892487 714 -  59632846  
i canFam3.chr16            C 0 C 0

a score=75958.000000
s hg38.chr4_KI270925v1_alt    222055 34 +    555799 TAGGA-ACCCCT-ACCTAACACTAGCGTGC-CCTGCT
s ponAbe2.chr4_random        3879335 34 -  23176937 TAGGA-ACCCCA-ACCTAACACTAGCGTGC-CCTGCT
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113781960 34 + 115148730 TAGGA-ACCCCT-ACTTAACACCAGCGTGC-CCTGCT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183600248 34 + 184069350 TAGGA-GCCCCT-ACCAAACACTAGCGTGC-CCTGCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188983825 34 + 189454096 TAGGA-GCCCCT-ACCGAACACTAGCGTGC-CCTGCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178406863 34 + 178775436 TAGGA-GCCCCT-ACCAAACACTAGCGTGC-CCTGCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135346844 34 + 135778131 TAGGA-GCCCCT-ACCGAACACCAGCGTGC-CCTGCT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190464495 35 - 190850796 CAGGA-GCCACTAATCTAACACTAGTGTGC-CCTGCT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87599066 36 - 129401213 TAGAATGCACCA-TTTTCATACCAGCCCACAACTACC
i mm10.chr8                C 0 C 0
s canFam3.chr16             17893201 34 -  59632846 TAGAG-CCACCA-TTCAAACAGTAGCTCAT-TCCATC
i canFam3.chr16            C 0 C 0
e panTro4.chr4             192915849 36 + 193495092 I

a score=153649.000000
s hg38.chr4_KI270925v1_alt    222089 49 +    555799 CCACACAGAGGGGCTCTTCCAGTCTTGGAAATGGGAGAGAAGGAACCCT
s panTro4.chr4             192915885 49 + 193495092 CCACACACAGGGGGTGTGCCAGTGTTGGAAAAGGGAGAGAAGGAACCCT
i panTro4.chr4             I 36 M 35667
s ponAbe2.chr4_random        3879369 49 -  23176937 CCACACAGAGGGGCTCTTCTCGTCTTGGAAATGGGAGAGAAGGAACCCT
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113781994 49 + 115148730 CCACACAGAGGAGGTCTTATAGTCTTGGAAACGGGAGAGAAGGAACCCC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183600282 49 + 184069350 CCACACAGAGGAGCTCTTCTAGTCTTGGAAATGGGAGAGAAGTAACCCc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188983859 49 + 189454096 CCACACAGAGGAGCTCTTCTAGTCTTGGAAATGGGAGAGAAGTAACCCc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178406897 49 + 178775436 CCACACAGAGGAGCTCTTCTAGTCTTGGAAATGGGAGAGAAGTAacccc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135346878 49 + 135778131 CCACACAGAGGAGCTCTTCTAGTCTTGGAAATGGGAGAGAAGTAACCCC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190464530 49 - 190850796 TCACACAGAGGAGCTCTTCTAGGCTTGGAAATGGGGCAGAAGGAACCCC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87599102 33 - 129401213 CTCTCTAAAGTAGCTTCTCTAGTCACGGAGATT----------------
i mm10.chr8                C 0 C 0
s canFam3.chr16             17893235 49 -  59632846 CCACAAAGAGCAACTTTTCTAGTCCTGCAGTTGAGAGAGAAGAAATAAT
i canFam3.chr16            C 0 C 0

a score=988326.000000
s hg38.chr4_KI270925v1_alt    222138 395 +    555799 ---TTTCTTCTCTTTGCTTCCTGGAGTCCTCTTCTGATTCCCTAACAGCATTGATGTTTAT-AATAAACTCAAGGAAGCCGGACTTTTCTAGATTTTCCACACTGTCATATCTTGCCACTGAAGCAAGGAACACAGAATGGTCCACAGGCTTGGATTCCGCAGGCTTGGATTAGGCGGGAGCAGAAGGGCTACAAATAAATGATTCCATGTACTTACTTCTGCTGTGGTTTATCA-CAAAGACCAAAGCCAAT-GGAAAATGAGGAGAGAGCAACAGAGATCCCTTGGGGAGGGGGGCAATTTGAAATGTATCAGGCTATAAGAAATGGTGCTTTTAAAAACATATTGAATAATATGATGGAGAGAAAGAttttcttg--tttttgttttt--gtttt---tgtttga
s ponAbe2.chr4_random        3879418 388 -  23176937 ---TTTCTTTTCTTTGCTTCCTGGAGTTCTCTTCTGATTCCCTAATAGCATTGATATTTAC-AATAAACTCAAGAAAGCCGGACTTTTCTAGATTTTCCACACTGTCATATCTTGCCACTGAAGCAAGGAACACAGAATGGTCCACAGGCTTGGATTCAGCAGGCTTGGATTAGGGGGGAGCAGAAGGGCAACAAATAAATGATTCCATGTATTCACTTCTGCTGTGGTTTATCA-CAAAGACCAA-GCCAAT-GGAAAATGAGAAGGGAGCAACAGAGATCCCTGGGGAAGGGGGGCCATTTGAAATGTATCAGGCTATAAGAAATGGTGCTTTTAAAAACATATTGAATAACATGATGGAGAGAAAGAttttcttg--tttttgttttt--gttt---------ga
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113782043 397 + 115148730 ---TTTCTTCTCTTTGCTTCCTGGAGTCCTCTTCTGATTCCCTAATAGCATTGATATTCAC-AATAAACTCATGGAAGCCCGACTTTTCTAGATTTTCCACACTGTCATATCTTGCCACTGAAGCAAGGAACACAGAATGGTCCACAGGCTTGGATTCAGCAGGCTTGGATTAAGGGAGAGCAGAAGGGCTACAAATAAATGATTCCATATACTCACTTCTGCTGTGGTTTATCA-CAAAGACCAAAGCCAAT-GGAAAATGAGGAGGGAGCAACAGAGATCCCTGGGGGAGGGGAGGCATTTGAAATATATCAGGCCATAAGAAATGGTGCTTTCAAAAACATATTGAATAACATGATGCAGAGAAAGACtttcttgtttttttgttttt--gtttt---tgtttga
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183600331 398 + 184069350 ---tttcttctctttgcttcctggagtccttttctgattccctaacagcattgatatttacaaataaactcaaggaaggccgacttttctagatttttcacactgtcatatcttgccactgaagcaaggagcacagaatggtccaccggcttggatTCAGCAGGCTTGGATTCAGGGGGAGAAGAAGGGCTGGCAATAAATTATTCCATGTATTCACTTCTGCTGTGGTTTATCA-CAAAGACCAAAGCCAAT-GGGAAATAAGGAGGGAGCAATAGAGATCCCTGTGGGAGGGGGG-CATTTGAAATGTATCAGGCTGTAAGAAATGGTGCTTTTAAAAATATATTGAATGACACGATGCAGAGAAACATTttcttg--tttttcttttc--tttttttttttttga
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188983908 400 + 189454096 ---tttcttctctttgcttcctggagtccttttctgattccctaacagcattgatatttacaaataaactcaaggaaggccgacttttctagattttccacactgtcatatcttgccactgaagcaaggagcacagaatggtccaccggcttggatTCAGCAGGCTTGGATTCAGGGGGAGAAGAAGGGCTGGCAATAAATTATTCCATGTATTCACTTCTGCTGTGGTTTATCA-CAAAGACCAAAGCCAAT-GGGAAATAAGGAGGGAGCAATAGAGATCCCTGTGGGAGGGGGG-CATTTGAAATGTATCAGGCTGTAAGAAATGGTGCTTTTAAAAATATGTTGAATGACACGATGCAGAGAAACATTTTCTTG--tttttcttttctttttttttttttttga
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178406946 398 + 178775436 ---ttttttctctttgcttcctgGAGTCCTTTTCTGATTCCCTAACAGCATTGATATTTACAAATAAACTCAAGGAAGGCCGACTTTTCTAGATTTTCCACACTGTCATATCTTGCCACTGAAGCAAGGAACACAGAATGGTCCACCGGCTTGGATTCAGCAGGCTTGGATTCAGGGGGAGAAGAAGGGCTGGAAATAAATTATTCCATGTATTCACTTCTGCTGTGGTTTATCA-CAAAGACCAAAGCCAAT-GGGAAATAAGGAGGGAGCAATAGAGATCTCTgggggagggggg-CATTTGAAATGTATCAGGCTGTAAGAAatggtgcttttaaaaatatattgaatgacATGATGCAGAGaaagattttcttg--tttttcttttc--tttttgtttttttga
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135346927 390 + 135778131 ---TTTCTTCTGTTTGCTTCCTGGATTCCTCTTCTGATTCCTTAACAGCATTGATATTTACAAATAAACTCAAGGAAGGCCGACTTTTCTAGATTTTCCACACTGTCATATCTTGCCACTGAAGCAAGGAACACAGAATGGTCCACCGGCTTGGATTCAGCAGGCTTGGATTCAGGGGGAGAAGAAGGGCTGGGAATAAATTATTCCATGTATTCACTTCTGCTGTGGTTTATCA-CAAAGACCAAAGCCAAT-GGGAAATGAGGAGGGAGCAATAGAGATCCCTGGGGGAGGGGGG-CATTTGAAATGTATCAGGCTGTAAGAAATGGTGCTTTTAAAAATATATTGAATGACACGATGCAGAGAAAGAttttcttg--tttttcttttt----------tttttga
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190464579 387 - 190850796 ----TTCTTCTCTTTGCTTCCTGGAGTTCTCTTCCGATTCCCTAACGGCATTGATACTCAGAAATAAAATCAAGGAAGTTTGACTTTTCCAGATCTCCCATGCTGTCATATCTTGCAATTTAAGCAAGGAACACAGAATGGTCCACACGCTTGGATTCAGCAGACTTGGATTCAGGGGGAGCAGAAGGGCTGGAAATAAATGATCCCATGTATTCACTTTTGCTGTGGTTTATCA-CAAAGACCAAAGCCAGT-GGAAAATGTGGAGGGAGCAACAGAGATCCCTGGGGAGGGGGAGGCATTTGAAACGTATCAGGCCATAAGAAATGATGCTTTTAAAA--CTACTGAATAACATGATGCAGAGCAAGACttt------tttttattttt--att-----tttttaa
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87599135 333 - 129401213 ---TTATATTCCCTTGCTCCCTGGAGTCTTC-CATAGTTTCCCAACAGCAGTGGTATTTAGAAATCAAATTAAAGAAGAACAA--GTTCTAGAATTTTTACTCTGTCACATCTTACCTCACAGGCAAGGAACTC----TGGTCTACAGGCTTGGATTCAACAA----------AAGTGGGGAACAGAGTAAAGAGATGGATGTCTGTATGTATTCGTTTCTGCTGTGGTTTATC-------ACTAGAGTCAGTAGAAAAATGAAGAGTATGTGAGA-------CTATAATAGAG----CATTTGGAATGTATCAAGCTATGAAAAGTAATTCCttt---------------------------------gtgtttttt--cttttattgtc--tttttccttatgtga
i mm10.chr8                C 0 I 123
s canFam3.chr16             17893284 326 -  59632846 TGCTTTATTCTCTTTGCTTACTGGAGTTCTC-TCTGGTTCCCTAACATCATAAATATTTATAAATAAAACCAAAGGAGATAGACTTCCTTACATTTTTCACCTTGTTGCATCCTACAACTGAGGCAGGGAGTAA-----GATCTACAGGCTCAGATTCAGCAA------------GGATAAGAAGGGGGATGGAAGGAAATGACTACAGGTGCTCATTTCTGTCGCAGTCAATTGCCAGAGATTCAAATCAAT-GGAAACTAGGGAGGAAGTAAAAGAGACCC-----AGAGAAGGAACATTTGGAATTTATCAAGTTACGAAAAAAAATGATATT---------------------------------------TTG--TTTTTCTATAA-----------------
i canFam3.chr16            C 0 C 0
e panTro4.chr4             192915934 35667 + 193495092 M

a score=74402.000000
s hg38.chr4_KI270925v1_alt    222533 45 +    555799 gacagagtctggctctgtctcccaggctggagtgcagtg--acgcaa
s ponAbe2.chr4_random        3879806 45 -  23176937 gacagagtctggctctgtctcccaggctggagtgcagtg--gcacaa
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113782440 45 + 115148730 gacggagtctggctctgtctcccaggctggagtgcagtg--gcacaa
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183600729 44 + 184069350 gacagagtctgggtgggttgcctaggctggggggg-ggg--ggacaa
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188984308 44 + 189454096 gacggagtctggctgtgttgcctaggctggagtgc-atg--gcacaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178407344 45 + 178775436 gacggagtctggctgtgttgcctaggctggagtgcagtg--acacaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135347317 45 + 135778131 gacggagtctggctgtgttgcctaggctggagtgcagtg--gcacaa
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190464966 47 - 190850796 gatggaacctggctctgtcacccaggctggagtacagtggtgtgtga
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17893610 23 -  59632846 ---------------------CTACATTGAAGAAC-ATG--ATGTAG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87599468 123 - 129401213 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=229042.000000
s hg38.chr4_KI270925v1_alt    222578 106 +    555799 tctcggctcactgcaacctcggcctcctgggttcaagcgattatcctgcctcagcctcccaagtagctgggattacaggtgcccgccaccgtgcctggctaatttt
s ponAbe2.chr4_random        3879851 106 -  23176937 tcttggctcaccgcaacctcggcctcctgggttcaagtgattctcctgcctcagcctcccaagtagctgggcttacaggtgcccgccaccgcgcctggctaatttt
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113782485 102 + 115148730 tctcagctcactgcaacctctgcttcctgggttcaagcaattctcctgcctcagcctcccaagtagctgggattacaggagcctgccaccgtgc----ctaatttt
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183600773 106 + 184069350 tctcggctcactgcaagctccgcctgctgggttcaggtgattctcctgcctcagcctcctgagtagctgggattacaggcgcccgtcaccacgcctggctgatttt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188984352 106 + 189454096 tctcggctcactgcaagctccgcctgctgggttcaggtgattctcctgcctcagcctcctgagtagctgggattacaggcgcccgtcaccacacctggctgatttt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178407389 106 + 178775436 tctcggctcactgcaagctccgcctgctgggttcaggtgattctcctgcctcagcctcctgagtagctgggattacaggcgcccgtcaccacacccggctgatttt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135347362 106 + 135778131 tctctgctcactgcaagctctgcctcctgggttcaggtgattctcctgcctcagcctcctgagtagctgggattacaggtgcccgtcaccacgcccggctgatttt
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190465013 105 - 190850796 tctcggctcactgcaacctccgcctcccaggttcaagcgattctcctgcctcagcctcctgagtagctgggattagaggc-ctcgccaccgtgcctgactaatttt
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87599468 123 - 129401213 I
e canFam3.chr16             17893633   0 -  59632846 C
e panTro4.chr4             192915934 35667 + 193495092 M

a score=4575.000000
s hg38.chr4_KI270925v1_alt    222684 9 +    555799 tgtattttt
s ponAbe2.chr4_random        3879957 9 -  23176937 tgtattttt
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113782587 9 + 115148730 tgtattttt
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190465118 9 - 190850796 tatattttt
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87599591 4 - 129401213 -----ttta
i mm10.chr8                I 123 C 0
e canFam3.chr16             17893633 0 -  59632846 C
e chlSab2.chr7             135347468 0 + 135778131 C
e papAnu2.chr5             178407495 0 + 178775436 C
e macFas5.chr5             188984458 0 + 189454096 C
e rheMac3.chr5             183600879 0 + 184069350 C
e panTro4.chr4             192915934 35667 + 193495092 M

a score=4283.000000
s hg38.chr4_KI270925v1_alt    222693 6 +    555799 agcaga
s ponAbe2.chr4_random        3879966 6 -  23176937 agtaga
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113782596 6 + 115148730 agtaga
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190465127 6 - 190850796 agtaga
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87599595 6 - 129401213 ttttga
i mm10.chr8                C 0 C 0
s canFam3.chr16             17893633 6 -  59632846 AGCAGA
i canFam3.chr16            C 0 C 0
e chlSab2.chr7             135347468 0 + 135778131 C
e papAnu2.chr5             178407495 0 + 178775436 C
e macFas5.chr5             188984458 0 + 189454096 C
e rheMac3.chr5             183600879 0 + 184069350 C
e panTro4.chr4             192915934 35667 + 193495092 M

a score=260827.000000
s hg38.chr4_KI270925v1_alt    222699 117 +    555799 gacggggttttgccatgttggccaggctggtctcaaact--cctg-acctcaggt----gatctgcctgtgtc-gccctcccaaaatgctgggattataggtgtgaggaactgtgcccggccAAG
s ponAbe2.chr4_random        3879972 117 -  23176937 gacgaggttttgccatgttggccaggctggtctcaaact--cctg-acctcagat----gatctgcctgtgtt-gccttcccaaagtgctgggattataggtgtgaggaactgtgcccggccAAG
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113782602 117 + 115148730 gacagagttttgccctgttggtcaggctggtctcaaact--cctg-acctcaggt----gatctgcctgtgtc-gccctcccaaagtgctgggattacaggtgtgaggaacagcccccggccAAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183600879 113 + 184069350 ----gggttttgccctgttggccaggatggtctcaaact--cctg-acctcaggt----gatctgcccctgtc-gccctcccaaagtgctggtattacaggtgtgagaaactgtgcccggccAAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188984458 113 + 189454096 ----gggttttgccctgttggccaggatggtctcaaact--cctg-acctcaggt----gatctgcccctgtc-gccctcccaaagtgctggtattacaggtgtgagaaactgtgcccggccAAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178407495 113 + 178775436 ----gggttttgccctgttggccaggatggtctcaaact--cctg-acctcaggt----gatctgcccctgtc-gccctcccaaagtgctggtattacaggtgtgagaaactgtgcccggccaag
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135347468 113 + 135778131 ----gggttttgccctgttggccaggctggtctcaaact--cctg-acctcaggt----gatccgcccccgtc-gccctcccaaagtgctggtattacaggtgtgagaaactgtgcccggccAAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190465133 117 - 190850796 gacggggtttcgccatgttggccaggctgatttgacact--actg-acctcgggt----gatccacctgcctc-gacctcccaaaatgctgggattacaggtgtaagccactgtgcccagccAAG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87599601 108 - 129401213 ggcagactctcattatattgctcaagttgacctttaactcacttgtagctgggattcacaatccttatgcttcagccccaagaaagtgctaggattacagg-----------------agccaag
i mm10.chr8                C 0 C 0
e canFam3.chr16             17893639   0 -  59632846 C
e panTro4.chr4             192915934 35667 + 193495092 M

a score=4511720.000000
s hg38.chr4_KI270925v1_alt    222816 1502 +    555799  
s ponAbe2.chr4_random        3880089 1540 -  23176937  
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113782719 1529 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183600992 1531 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188984571 1535 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178407608 1534 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135347581 1533 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190465250 1522 - 190850796  
i calJac3.chr3             C 0 I 305
s mm10.chr8                 87599709 1494 - 129401213  
i mm10.chr8                C 0 C 0
s canFam3.chr16             17893639 1532 -  59632846  
i canFam3.chr16            C 0 C 0
e panTro4.chr4             192915934 35667 + 193495092 M

a score=4118484.000000
s hg38.chr4_KI270925v1_alt    224318 1501 +    555799  
s ponAbe2.chr4_random        3881629 1502 -  23176937  
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113784248 1504 + 115148730  
i nomLeu3.chr7b            C 0 I 308
s rheMac3.chr5             183602523 1506 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188986106 1506 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178409142 1506 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135349114 1554 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190467077 1483 - 190850796  
i calJac3.chr3             I 305 C 0
s mm10.chr8                 87601203 1482 - 129401213  
i mm10.chr8                C 0 C 0
s canFam3.chr16             17895171 1513 -  59632846  
i canFam3.chr16            C 0 C 0
e panTro4.chr4             192915934 35667 + 193495092 M

a score=180878.000000
s hg38.chr4_KI270925v1_alt    225819 72 +    555799 AAAAGTTGTATGCTAGGTAGCTTGGTACCTGCATGTTGGAAGTACGTCCCTGCTGCTCC-TC-TAAGTTTTCTC
s ponAbe2.chr4_random        3883131 72 -  23176937 AAAAGTTGTATGCTAGGTAGCTTAGTACATGAATGTTGGAAGTACGTTCCTGCTGCTCC-TC-TAAGTTTTCTA
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113786060 72 + 115148730 aaaaGTTGTATGCTAGGTAGCTTAGTACATGAATGTTGGAAGTACGTTCCTGCTGCTCC-TC-TAAGTTTTCAA
i nomLeu3.chr7b            I 308 C 0
s rheMac3.chr5             183604029 71 + 184069350 AAAAGTTTTATGCTAGGTAGCTTAGTACACGAATGTT-GAAGTACGTTCCTGCTGCTCC-TC-TAAGTTTTCTA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188987612 71 + 189454096 AAAAGTTTTATGCTAGGTAGCTTAGTACACGAATGTT-GAAGTACGTTCCTGCTGCTCC-TC-TAAGTTTTCTA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178410648 72 + 178775436 aaaagttTTATGCTAGGTAGCTTAGTACATGAATGTTGGAAGTACGTTCCTGCTGCTCC-TC-TAAGTTTTCTA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135350668 71 + 135778131 AAAAGTTTTATG-TAGGTAACTTAGTACATGAATGTTGGAAGTACGTTCCTGCTGCTCC-TC-TAAGTTTTCTA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190468560 72 - 190850796 AAAAGCTTTGTGGTAGGTGGCTTAGTATACGAATGTTGGAAGTACTCTCCCGCTGCTCC-TC-TAAGttttctt
i calJac3.chr3             C 0 I 310
s mm10.chr8                 87602685 73 - 129401213 TAAAGTTTTATGCCAAGTAGTACCATGTCCTAAAGTTGTAGTTATATTCCTGTTGCCTT-ACATAAATTTAGTC
i mm10.chr8                C 0 C 0
s canFam3.chr16             17896684 72 -  59632846 ACAAGTATTATGCTAAGTACCACAGCATCCTAA-ATTGAACTCATGTTCCTGTCACCTCATC-TAAGCTTTAAC
i canFam3.chr16            C 0 C 0
e panTro4.chr4             192915934 35667 + 193495092 M

a score=2997.000000
s hg38.chr4_KI270925v1_alt    225891 1 +    555799 T
s ponAbe2.chr4_random        3883203 1 -  23176937 T
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113786132 1 + 115148730 T
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183604100 1 + 184069350 T
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188987683 1 + 189454096 T
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178410720 1 + 178775436 T
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135350739 1 + 135778131 T
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190468942 1 - 190850796 T
i calJac3.chr3             I 310 C 0
s mm10.chr8                 87602758 1 - 129401213 T
i mm10.chr8                C 0 I 755
s canFam3.chr16             17896756 1 -  59632846 C
i canFam3.chr16            C 0 C 0
e panTro4.chr4             192915934 35667 + 193495092 M

a score=316367.000000
s hg38.chr4_KI270925v1_alt    225892 136 +    555799 CTGTAGGCTG----TTAAGGAGTG-AAGGCCTGATAAAG-----------------------------------CATGTGTATGCATGCATGGATATAGATATGCATGGGTGTACAGCTGTCATCTATAAGTGCATATCTCTACACGCAGGATGTCAATTCAAATGTTAGAggcag
s ponAbe2.chr4_random        3883204 137 -  23176937 CTGTAGGCTG----TTAAGGAGTGGAAGGCCTGATAAAG-----------------------------------CATGTGTATGCATGCATGGATATAGATATGCATGGGTGTACAGCTGTCGTCTGTATGTGCATATCTCTACACGCACAATGTCAATTCAAACGTTACAggcag
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113786133 137 + 115148730 CTGTAGGCTG----TTAAGGAGTGGAAGGCCTGATAAAG-----------------------------------CATGTGTATGCATGCATGGATATAGATATGCATGGGTATACAGCGGTCGTCTATATGTGCATATCTCTACATGCAGGATGTCAATTCAAATGTTAGAggcag
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183604101 134 + 184069350 CTGTAGGCTG----TTAAGTAGTGGAAGGCCTGATAAAG-----------------------------------CATGTTTATGCATGCATGGATATAGATATGCATGTGTATACAGCTG---TCTACATGGACATATCTCTACACACAGGATGTAAATTCAAATGTTAGAggcaa
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188987684 134 + 189454096 CTGTAGGCTG----TTAAGTAGTGGAAGACCTGATAAAG-----------------------------------CATGTTTATGCATGCATGGATATAGATATGCATGTGTATACAGCTG---TCTACATGGACATATCTCTACACACAGGATGTAAATTCAAATGTTAGAggcaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178410721 134 + 178775436 CTGTAGGCTG----TTAAGTAGTGGAAGGCCTGATAAAG-----------------------------------CATGTTTATGCATGCATGGATATAGATACGCATGTGTATACAGCTG---TCTACATGTACATATCTCTACACACAGGATGCAAATTCAAATGTTAGAGGcaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135350740 134 + 135778131 CTGTAGGCTG----TTAAGTAGTGGAAGGCCTGACAAAG-----------------------------------CATGTTTATGCATGCATGGATATAGATACGCATGTGTATACAGCTG---TCTACATGTACATATCTCTACACGCAGGATGTAAATTCAAATGTTAGAggcaa
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190468943 133 - 190850796 CTGTAGGCTG----TTAAGGAGTG-GAGGCCTGATAAAA-----------------------------------CATGTGTATGCATGCATGGATACAGATATGTGTGTGTACACGGCTG---TCTATGTGTACATATCTCTACATGCAGGACGTAAATTCACATGTTAGAGGCAG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17896757 168 -  59632846 ---AAAACTGGGCCTTAAGGAGTAAAAGACTTGATAAAATTATACATCCACTGTCATTAATCTAAGAAAGACATCGTTTGTGTGCATGTATGTATACAAGCATGTACGTGCAT--GACTA---CCAATATATGCATAACTATACATACAGCATAGAAACCCAAATTTTAAAAACAA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87602759 755 - 129401213 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=624453.000000
s hg38.chr4_KI270925v1_alt    226028 298 +    555799 gtcacagtggctcatgcctgtaaccccagcaatttgtgaggctgaggtgagagaatcccttatgcaggagttcaagaccag-cctgggcaacatagtaatagtaagaccttgtctctacaagaaataaaaaataaaaaat-----ttaggctggtacagtggtgtgcacctgcagtcctagtgacttgggaggctgaggagggaggatcgcttgagcccaaaagttggaggttacagcgagctatgataatgccagtgcactctagcctgggcaacagagctagatcttgtc--ttaaaaaaaaa-t
s ponAbe2.chr4_random        3883341 301 -  23176937 gtcacagtggctcaggcctgtaaccccaacaatttgtgaggctgaggtgagagaatcccttacgcaggagttcaagaccag-cctgggcaacagagtaatagtaagaccttgtctctacaagaaataaaaaataaaaaaa---aattagcccggtacagtggtgtgcacctgcagtcctagtgacttgggaggctgaagagggaggatcttttgagcccaaaagttggaggttacagtgagctatgataatgccagtgcactctagcctgggcaacagagctagatcttgtc--ttaaaaaaaaaaT
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113786270 302 + 115148730 gtcacagtggctcatgcctgtaaccccagcaatttgtgaggctgaggtgggagaatcccttatgcaggagttcaagaccag-cctgggcaacagagtaatagtaagaccttgtctctaaaagaaataaaaaataaagaataaaaattagcctggtacagtggtgtgcagttgtagtcctagtgacttgggaggctgaggagggaggattgcttgagccc-aaagttggaggttacagtgagctatgatgatgccagtgcactccagcctgggcaacagagctagatcttgtc--ttaaaaaaaaa-t
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183604235 292 + 184069350 gtcacagtggctcatgcctgtaatcccagcaatttgtgaggctgaggtgggagaatcccttatgcaggaattcaagaccag-cctgggcaacatagtaatagtaagaccttgtctctataagaaat----aaaaaaaaaa-----ttagcctggtacagttgtgtgcacccatagtcctagtgacttgggaggctgaggagggaggatcgtttgagcccaaaagttgtaggttacagtgagctataataatgccagtgcaatccagcctgggcaacagagctagatcttgtc--ttaaaaaaa---t
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188987818 292 + 189454096 gtcacagtggctcatgcctgtaatcccagcaatttgtgaggctgaggtgggagaatcccttatgcaggaattcaagaccag-cctgggcaacatagtaatagtaagaccttgtctctataagaaat----aaaaaaaaaa-----ttagcctggtacagttgtgtgcacccatagtcctagtgacttgggaggctgaggagggaggatcgtttgagcccaaaagttgtaggttacagtgagctataataatgccagtgcaatccagcctgggcaacagagctagatcttgtc--ttaaaaaaa---t
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178410855 296 + 178775436 gtcacagtggctcatgcctgtaatcccagcaatttgtgaggctgaggtgggagaatcccttatgcaggaattcaagaccag-cctaggcaacacagtaatagtaagaccttgtctctataagaaataaaaaaaaaaaaaa-----ttagcctggtacaGTTGTGTGCACCCATAGTCctagtgacttgggaggctgaggagggaggatcgtttgagcccaaaAGTtgtaggttacagtgagctataataaTGCCAgtgcaatccagcctgagcaacagagctagatcttgtc--ttaaaaaaa---t
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135350874 290 + 135778131 gtcacagtggctcatgcctgtaatcccagcaatttgtgatgctgaggtgggagaatcccttacgcaggagttcaagaccag-cctaggcaacatagtaatagtaagaccttgtctctataagaaat-----tttaaaaaa-----ttagcctggtacagttgtgtgcacccatagtcctagtgacttgggaggctgaggagggaggatcgtttgagcccaaaagttgtaggtcacagtgagctataataatgtcagtg-aatccagcctgggcaacagagctagatcttgtc--tcaaaaaaa---t
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190469076 284 - 190850796 GTCA-Agtggctcatgcctataacgtcagcaatttatgaggctgaggtgggacaatccctaatgcaggagctcaagatcagccctgggcagcatattgacagcaagaccttgtctctacaagaaataaagagtgaagaaa-----ttaacctggtac----------------agtccccctgacttgggaggctgaggtgggaggatcacttgggcctgaaagtttgaggttacggtgagccatgatgatgccactgcactgcagcctctgcagcagagctggatcctgtcttttaaaaaaaaG-T
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87602759 755 - 129401213 I
e canFam3.chr16             17896925   0 -  59632846 C
e panTro4.chr4             192915934 35667 + 193495092 M

a score=24586.000000
s hg38.chr4_KI270925v1_alt    226326 10 +    555799 taaaaaGTGT
s ponAbe2.chr4_random        3883642 10 -  23176937 TTAAAAGTGT
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113786572 10 + 115148730 taaaaaGTGT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183604527 10 + 184069350 taaaaaGTGT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188988110 10 + 189454096 taaaaaGTGT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178411151 10 + 178775436 taaaaagtgt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135351164 10 + 135778131 taaaaaGTGT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190469360 10 - 190850796 TAAAAAGTAT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87603514 10 - 129401213 TAAATAAATT
i mm10.chr8                I 755 C 0
e canFam3.chr16             17896925  0 -  59632846 C
e panTro4.chr4             192915934 35667 + 193495092 M

a score=390195.000000
s hg38.chr4_KI270925v1_alt    226336 141 +    555799 TATTGTCTAAGAGATG-GGATGAGATCATATATTCTTTTTATCATTAAAAACTTTTGTTTTCTAAATTTCCTATGAGGAATATTTATTTCTT-T-ATAAACAGTATAAACAACTAGCTTTAAAAAATAGTGTGTCTAGCCTATG
s ponAbe2.chr4_random        3883652 138 -  23176937 TAATGTCTAAGAGATG-GGATGAGATCAT-TATTCTTTTTATCAATAAAAACTT--GTTTTCTAAATTTCCTATGAGGAATATTTATTTCTT-T-ATAAACAGTATAAACAACTAGCTTTAAAAAATAGTGTGTCTAGCCTATG
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113786582 141 + 115148730 TATTGTCTAAGAGATG-GGATGAGATCATATATTCTTTTTATCATTAAAAACTTTTGTTTTCTAAATTTCCTATGAGGATTATTTATTTCTT-T-ATAAACACTATAAACAACTAGCTTTAAAAAATAGTGTGTCTAGACTATG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183604537 141 + 184069350 TATTGTCTAAGAGAAG-GGATGAGATCATATATTCTTTTTATCATTAAAAACTTTTGTTTTCTAAATTTCCTATAAGGAATATTTATTTCTT-T-ACAAACAGTGTAAACGACTAGCTTTAAAAAATAGTGTGTCTAGCCTGTG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188988120 141 + 189454096 TATTGTCTAAGAGAAG-GGATGAGATCATATATTCTTTTTATCATTAAAAACTTTTGTTTTCTAAATTTCCTATAAGGAATATTTATTTCTT-T-ACAAACAGTGTAAACGACTAGCTTTAAAAAATAGTGTGTCTAGCCTGTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178411161 141 + 178775436 tatTGTCTAAGAGAAG-GGATGAGATCATATattctttttatcattaaaaacttttgttttctaaatttcctataaggaatatttatttctt-t-acaaacAGTGTAAACGACtagctttaaaaaatagtgtGTCTAGCCTGTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135351174 141 + 135778131 TATTGTCTAAGAGAAG-GGATGAGATCATATATTCTTTTTATCATTAAAAACTTTCGTTTTCTAAATTTCCTATGAGGAATATTTACTTCTT-T-ACAAACAGTATAAACAACTAGCTTTAAAAAATAGTGTGTCTAGCCTGTG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190469370 136 - 190850796 CATGGTCTAAGAGATG-GGACAAGAGTATA-ATTATTTTTATCTTTAAAAACTTTTGTTTTCTAAATTTCCTACGAGGAATATGTGTATCTT-T-ATAAACAGTATGA---ACTAGCTTT-AAGCATAGTGTGTCTAGCCTATG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87603524 134 - 129401213 TATT-CCTAGAAGATG-AGAT-------TATAGGTATTTTGCCACTAAAAACTTTTATTTTCAACATTTTCTATGAGTAGCATGTATTCCCT-TGAAAAGTGATATAAATAATATGTTTTAAAGTATAATATTTCCAGTCTATG
i mm10.chr8                C 0 C 0
s canFam3.chr16             17896925 134 -  59632846 -TATGTCTAAGAGATGCAAATAAGGTTAT-------TTTTATCATTGAAAATTTCTGTTTTCTAAATTTACTATGAGGATTATGTATTACTTCT-ACAAGCAGCATAAACAATAAGCTTTAAAATAAAGCATGTCtagt-gatg
i canFam3.chr16            C 0 I 141
e panTro4.chr4             192915934 35667 + 193495092 M

a score=93927.000000
s hg38.chr4_KI270925v1_alt    226477 36 +    555799 AAGAAAGAACA-------AGTAATAATCTTCATTCTACAGCAA
s ponAbe2.chr4_random        3883790 36 -  23176937 AAGAAAGAACA-------AGTAATAATCTTCATTCTACAGCAA
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113786723 36 + 115148730 AAGAAAGAACA-------AGGAATAATCTTCATTCTACAGCAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183604678 36 + 184069350 AAGAAATAACA-------AGTAATAATCTTCATTCTACAGTAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188988261 36 + 189454096 AAGAAATAACA-------AGTAATAATCTTCATTCTACAGTAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178411302 36 + 178775436 AAGAAATAACA-------AGTAATAATCTTCATTCTACAGTAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135351315 36 + 135778131 AAGAAAGAACA-------AGTAATAATCTTCATTCTACAGTAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190469506 43 - 190850796 AAGAAACAACATTAGAATGAAGATAATCTTCATTCTACAGAAA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87603658 36 - 129401213 Aaaaagaaatg-------tgtaggagtcagtttacttcatcta
i mm10.chr8                C 0 I 393
s canFam3.chr16             17897200 36 -  59632846 AAAACAGAATA-------AGTAATAATCACCATTCTAGGGCAA
i canFam3.chr16            I 141 C 0
e panTro4.chr4             192915934 35667 + 193495092 M

a score=506458.000000
s hg38.chr4_KI270925v1_alt    226513 226 +    555799 TGGTAATTTCCCCAAGATCA-TTAACTCTTCCAAACCTGTTTTCCCTGGATCTCAAATTGGAGCCTAGAGAAGGCATTTTTGCTAAAGGTTAGTTTGCCACA----------AGGGCTCAGATCAA--TGAAATTTTTCTCAGCTTGAGTTTGGCTGAAAGGCCGGTTTTGGGGGTGTGTGGGTTGGTGAGAGGGCAAAGTCTTAGTCtatacttataaataaatatatat--------atat------ttac
s ponAbe2.chr4_random        3883826 232 -  23176937 TGGTAATTTCCCCAAGATCA-TTAACTCTTCCAAACCTGTTTTCCCTGGATCTCAAATTGGGGCCTAGAGAAGGCATTTTTGCTAAAGGTTAGTTTGCCGCA----------AGGGCTCAGATCAA--TGAAATTTTTCTCAGCTTGAGTTTGGCTGAAAGGCCAGTTTTGGGGGTGTGTGGGTTGGTGAGAGGGCAACGTCTTAGTCTCTACTtataaataaataaatat--------atatatttatttac
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113786759 211 + 115148730 TGGTAATGTCCCCAATATCA-TTAATTCTTCCAAACCTGTTTTCCCTGGATCTCAAATTGGGGCCTAGAG---------------AAGGTTAGTTTGCTGCA----------AGGGCTCAGATCAA--TGAAATTTTTCTCAGCTTGAGTTTGGCTGCAAGGCCAGTTTTGGGTGTGTGTGGGTTGGTGAGAAGACAAAGTCTTAGTCtatacttataaatatacatatat--------atat------ttgc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183604714 228 + 184069350 TGGTAATTCCCCCAAGATCA-TTAACTCTTTCAAACCTGTTTTCCCTGGATCTCAAATTGGGGCCTAGAGAAGGCATTTTTGCTAAAGGTTAGTTTACCGCA----------AGGGCTCAGATCAA--TGACATTTTTCTCAGCTTGAGTTTGGCTGCAAGGTCAGTTTTGGGGGTGTGTGGGTTGGTGAGAGGGCAAAGTCTTAGTCtatacatatatatacacacacac------atatat------ttac
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188988297 228 + 189454096 TGGTAATTCCCCCAAGATCA-TTAACTCTTTCAAACCTGTTTTCCCTGGATCTCAAATTGGGGCCTAGAGAAGGCATTTTTGCTAAAGGTTAGTTTACCGCA----------AGGGCTCAGATCAA--TGACATTTTTCTCAGCTTGAGTTTGGCTGCAAGGTCAGTTTTGGGGGTGTGTGGGTTGGTGAGAGGGCAAAGTCTTAGTCtatacatatatatacacacacac------atatat------ttac
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178411338 226 + 178775436 TGATAATTCCCCCAACATCA-TTAACTCTTTCAAACCTGTTTTCCCTGGATCTCAAATTGGGGCCTAGAGAAGGCATTTTTGCTAAAGGTTAGTTTACCGCA----------AGGGCTCAGATCAA--TGACATTTTTCTCAGCTTGAGTTTGGCTGCAAGGTCAGTTTTGGGGGTGTGTGGGTTGGTGAGAGGGCAAAGTCTTagtctatacatatatatacacacacac--------atat------ttac
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135351351 234 + 135778131 TGGTAATTCCCCCAAGATCA-TTAATTCTTCCAAACCTGTTTTCCCTGGATCTCAAATTGGGGCCTAGAGAAAGCATTTTTGCTAAAGGTTAGTTTACCGCA----------AGAGCTCAGATCAA--TGACACTTTTCTCAGCTTGAGTTTGGCTGCAAGGTCAGTTTTGGGGGTGTGTGGGTTGGTGAGAGGGCAAAGTCTTAGTCtatacatgtatatatacacacacacacatatatat------ttac
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190469549 222 - 190850796 GGATGATTCCCCCAAGGTC---TGCCTCTTCCAAACCTGTTTTCCCTGCATCTCAAACCGGGACCTAGAGAAGGCATCGTTGCCAAAGGTTAGTTTGCCCCC----------TGGGCTCAGGTCAG--TGAAATTTCTCTCAGCTTGAGTTTGGCTGCCGGGCCAGTTTTGGGGGTGTGTGGGTTGGTGAAAGGGCCAAGTCTTAGTCTATACTTACCtatatttacatat--------atat--------at
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17897236 196 -  59632846 GGATTATTCCCAAAAGACCATTTGCCTCTTGTATATCCG-TTCACCTAGATTCCAAATTGGGGCCTGTAGAAAGCATTGCTGCTAAAGGTCAGTGTGTCCTATAGTACCTACTGGGCACAGATGAAAGTGAGA-TTTTCTGAG--TGAGTCTAGCTGCAAGGTCA-TTCTGGAGAAGTGTGGGTTGGTGGAAGGATACAGC----------------------------------------------------
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87603694 393 - 129401213 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=855869.000000
s hg38.chr4_KI270925v1_alt    226739 396 +    555799 ataaataca-ttacacacatatatattaac---aa-atatatattatttctgtacaatattttacatatatatgtaACTTGATAAACTTTTGGTATGCATGGGAGTGGGTTACCTAAAAGCATATTATACAGAATT-----GTTCTCTATTAACATTGGAGTATTCCTTCTACCAGTG-tgaggtcatactg------tgcacactgctttagagtctctcctttgtactgtgaacacttccaatgacatcaaatatttgtataaataacaattctaaagttgcctaacagatatatcaaattacttattgcatcc-ttaggtttaatcttttataacatttccaa-ttttctccattacaaataggaccaccatgagcacc-ttacatgaata--------------------------------------------------------------tgctttt-------------------------------gtaaatatcaaagag
s ponAbe2.chr4_random        3884058 396 -  23176937 ataaataca-ttacacacatatat--taac---aa-atatatattatttctatacaatattttacatatatatgtaACTTGATAAACTTTTGGTATGCATGGGAGTGGGTTACCTAAAAGCATATTATACAGAATT-----GTTCTCTATTAATATTGGAGTATTCTTTCTACTAGTG-TGAGGCCATACTG------TGCACACTGCTTTAGAGTCTCTCCTTTGTACTGTGAACACTTCCAATGACATCAAATATTTGTATAAATAACAATTCTAAAGTTGCCTAACAGATATATCAAATTACTTATTACATCC-TTAGGTTTAATCTtttatatcatttcaaaattttctccattataaataggaccgccatgagcacccttacgtgaata--------------------------------------------------------------cgctttt-------------------------------gtaaatatcaaagag
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113786970 398 + 115148730 ataaataca-ttacacacatatatattaaa---aatacatatattatttctatataatattttacatatatatgtaACTTGATAAACTTTTGGTATGCATGTGAGTGGGTTACCTAAAAGCATATTAAACAGACTT-----GTTCTCTATTAATATTGGAGTATACTTTCTACCAGTG-TGAGGTCATACTG------TGCACGCTGCTTTAGAGTCTCTTCTTTGTACTCTGAACACTTCCAATGACATCAAATATTTGTATAGATAACAATTCTAAACTTACCTAACAGATACCTCAAATTACTTATTACATCC-TTAGGTTTAATCTTTTATATAATTTCAAATTTTTCTCCATTATAAATAGGACCGCCATGAGCACCCTTACATGAATA--------------------------------------------------------------CGCTTTT-------------------------------GT-AATATCAAAGAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183604942 375 + 184069350 ataaataca-ttatacacatatatatTAAC---AA-ATATATACTATTTCT-----ATATTTTACATATGTATG-AACTTGAAAAACTTTTGGTATGCATGGGAGTGGGTTACCTAA-----------------TT-----GTTCTCTATTAATATTGGAGTATTCTTTCTACCAGTG-TGAAGTCTTACTG------TGCACACTGCTTCAGAGTCTCTTGTttgtaccgtgaacgcttccaatgtcatcagatatttgcataaacaacaattctaaagttgcctaacagacatatcaaattacttattacatcc-ttaggctgaatcctttatatcatttcaaatttttctccattacaaataggactgccatgaacacccttacatgaata--------------------------------------------------------------tattttt-------------------------------gtaaatatcaaacag
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188988525 375 + 189454096 ataaataca-ttatacacatatatattaac---aa-atatatactatttct-----atattttacatatgtatG-AACTTGAAAAACTTTTGGTATGCATGGGAGTGGGTTACTTAA-----------------TT-----GTTCTCTATTAATATTGGAGTATTCTTTCTACCAGTG-TGAAGTCTTACTG------TGCACACTGCTTCAGAGTCTCTTGTttgtaccgtgaacgcttccaatgtcatcagatatttgcataaacaacaattctaaagttgcctaacagacatatcaaattacttattacatcc-ttaggctgaatcctttatatcatttcaaatttttctccattacaaataggactgccatgaacacccttacatgaata--------------------------------------------------------------tattttt-------------------------------gtaaatatcaaagag
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178411564 381 + 178775436 ataaataca-ttatacacatatatattaac---aa-atatatactatttctatataatattttacatatgtatgtaactTGAAAAACTTTTGGTATGCATGGGAGTGGGTTACGTAA-----------------TT-----GTTCTCTATTAATATTGGAGTATTCTTTCTACCAGTG-TGAGGTCTTACTG------TGCACACTGCTTCAGAGTCTCTTCTTTGTACCGTGAATGCTTCCGATGTCACCAGATATTTGCATAAACAACAATTCTAAAGTTGCCTAACAGACATATCAAATTACTTATTACATCC-TTAGGCTGAATCCTTTAtatcatttcaaatttttctccATTACAAATAGGACTGCCATGAGCACccttacatgaata--------------------------------------------------------------tattttt-------------------------------gtaaatatcaaAGAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135351585 381 + 135778131 ataaataca-tcacacacatatatattaac---aa-atatatattatctctatataatactttacatatgtatgtaACTTGATAAACTTTCGGTATGCATGGGAGTGGGTTACCTAA-----------------TT-----GTTCTCTATTAATATTGGAGTATTCTTTCTACCAGTG-TGAGGCCATACTG------TGCACACTGCTTCAGAGTCTCTTCTttgtaccgtgaacgcttccaatgtcatcagatatttgcctaaacaacaattctaaagttgcctaacagatatatcaaattacttattatatcc-ttaggttgaatcctttatattatttcaaatttttctccattacaaacaggactgccatgagcacccttacatgaata--------------------------------------------------------------tattttt-------------------------------gtaaatatcaaagag
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190469771 385 - 190850796 atatatata-ttacacacatatat--tgac---aa-gtatatattatttatatataAGATTTTACATATATATGTAATTTGATAAACTTTTGGTATGCATGGGAGTGGGTTACCTAAAAGCATATTAGACAGAATT-----ATTCTCTATTACTGTTTGAGTATTCTGTCTGCCAGTG-tgaggtcatactg------cgcatactgctttatagtctcttctttgtactgtaaacacttccaatgtcatcaaatatttacataaataacaattctagagatgcctaacagatgtatcaaattacttctcaaatcc--tatgtttgatcctttataacatttcagatttttctccattacaaacagcactgccgctagcacccttgcatgaata-------------------------------------------------------------------------------------------------------aatatcaaagag
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87604087 369 - 129401213 ACATATGCAGTTATACACATACATACACACTGAAC-ACATGTATTGATTCA----------TTACACAGATTCAGAAT---------------TATACTAAAGGGTGGGTCA-TTAAAAATATATCACCTAGCATTATGTAATTCTGTAAAACTATTGCAATGTTCTCTCCA-TAGTGCTGCTATCATACTA------CCAGTACTGATTTAGTATCTTTACTTTGCTCTGTGCACACTT----TGTCAAAAAATATTTGTCCAAATAATAATAGTGTGGATACCTAAT-GATATATTAAATTACTTTCCAAATAC--CATGCTTAG-CTTTTGGATTATTTTCAGTATTTTGTGATTGCAAACAGTA-TGTTACACACATCCT--AATGAAAA--------------------------------------------------------------CACTTTT-------------------------------C--AATGGCAAGGCT
i mm10.chr8                I 393 C 0
s canFam3.chr16             17897432 418 -  59632846 -----------------------------------------------------------TTCTAATTACAAATGCAAAGTAACAAATTTGGTGGGTGTGTAGAGTTAGCTCACATAAAGGCAAATGACTCATAATT-----ATTCACTATTCATATTTGAGTATTCTTTCTACAAATC-TGAGGTCACACTATTATACTGTATATTATTTTATAGTCT------------ATGTACACTTGCAATATCATTAG---TTTTTCTAAACAGTAATTTTATGGCTGCCT-ACATATGTATCAAATTACTTAACAAATCCCTTGTGCTTAATCCTTTA----------GGTTTTTCTCCATGAGAGATAGTAATGCCATGAGCGTGCTTATACAAATAGCAATTTTTTTCTCTGTGGATAATGGCATTCTCTTACTTGTTTTATTAGTTaataaattttgtgttttttagagcagttttagattcacagtaaaattgagtagaaagtacagag
i canFam3.chr16            C 0 I 180
e panTro4.chr4             192915934 35667 + 193495092 M

a score=5129525.000000
s hg38.chr4_KI270925v1_alt    227135 1912 +    555799  
s ponAbe2.chr4_random        3884454 1919 -  23176937  
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113787368 1913 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183605317 1920 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188988900 1921 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178411945 1920 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135351966 1920 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190470156 1889 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87604456 1887 - 129401213  
i mm10.chr8                C 0 C 0
s canFam3.chr16             17898030 1989 -  59632846  
i canFam3.chr16            I 180 I 193
e panTro4.chr4             192915934 35667 + 193495092 M

a score=474934.000000
s hg38.chr4_KI270925v1_alt    229047 197 +    555799 AAATAAATGGAGTATGTATTCAGTAGAT----AGACAAACGGATAGAGCACAGATCAAC-TAATAGAGATAACATTGCCATTAAATTATAA----------------------------------------CTCATAAATGCTT--------TTAGAAAAAGCTTCCAGACAACTGCCAT--CTCTACCTTATTAATGCCTAGCCTGT-AAAAGCAAGGAATTAAAGAATTTCTCAAGAAATGGCAGACTCCA
s ponAbe2.chr4_random        3886373 245 -  23176937 AAATAAATGGAGTATGTATTCAGTAGAT----AGACAAACCAATAGAGCATAGATCAAC-TAATAGAGATAACATTGCCATTAAATTATAATAGATCAACTAATAGAGATAACATTGCCATTAAATTATAACTCATAAATGCTTCAGAGCCTTTAGAAAAAGTTTCCAGACAACTGCCAT--CTCTACCTTATTAATGCCTCACCTGT-AAAAGCAAGGAATTAAAGAATTTCTAAAGAAATGGCAGACTCCA
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113789281 205 + 115148730 AAATAAATGGAGTATGTATTCAGTAGAT----AGACAAACCGATAGAGCATAGATCAAC-TAATAGAGATAACATTGCCATTAAATTATAA----------------------------------------TTCATAAATGCTTCAGAGCCTTTAGAAAAAGTTTCCAGACAACTGCCAT--CTCTACCTTATTAACGCCTAGCCTGT-AAAAGCAAGGAATTAAAGAATTTCTAGAGAAATGGCAGACACCA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183607237 205 + 184069350 AATTAAATGGAGTATGTATTCAGTAGAT----AGACAAACCGACAGAGCACAGGTCAAC-TAATAGAGATTACATTGACATTAAACTATAA----------------------------------------CTCATAAATGCTTCAGAGCCTTTAGAAAAAGTTTCCAGACAACTGTCAT--CTCTGCCTTATTAATGCCCAGCCTGT-AAAAGCAAGGATTTAAAGAATTTCTAAAGAAATGGCAGATTCCA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188990821 205 + 189454096 AATTAAATGGAGTATGTATTCAGTAGAT----AGACAAACCGACAGAGCACAGATCAAC-TAATAGAGATTACATTGACATTAAACTATAA----------------------------------------CTCATAAATGCTTCAGAGCCTTTAGAAAAAGTTTCCAGACAACTGTCAT--CTCTGCCTTATTAATGCCTAGCCTGT-AAAAGCAAGGATTTAAAGAATTTCTAAAGAAATGGCAGATTCCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178413865 205 + 178775436 AATTAAATGGAGTATGTATTCAGTAGAT----AGACAAACCGATAGAGCACAGATCAAC-TAGTAGAGATTACATTGACATTAAACTATAA----------------------------------------CTCATAAATGCTTCAGAGCCTTTAGAAAAAGTTTCCAGACAACTGTCAT--CTCTGCCTTATTAATGCCTAGCCTGT-AAAAGCAAGGATTTAAAGAATTTCTAAAGAAATGGCAGATTCCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135353886 203 + 135778131 AATTAAATGGAGTATGTATTCAGTAGAT----AGACAAACCGATAGAGCACAGATCAAC-GAATAGAGATTACATTGACATTAAACTATAA----------------------------------------CTCATAAATGCTTCAGAGCCTTTAG--AAAGTTTCCAGACAACTGTCAT--CTCTGCCTTATTAATGCCTAGCCTGT-AAAAGCAAGGATTTAAAGAATTTCTAAAGAAATGGCAGACTCTA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190472045 173 - 190850796 AAATAAATGCAATATGTATCCA----AC----AGACACACCGACAAAACATAGATCAAC-TCATATAGATAACATTGCGGCTATATCATAA----------------------------------------CTCATAAATACTTCAGAGCCTTTAGAAAGAGTTTCCAGACAATGGCAGTCGCTCCACCTTATTAATGCCTAACCTGT-AAAAGCAAGGATTT------------------------------
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87606343 192 - 129401213 AAATCCA------ATATATGC--TAGAT----AGGAAGATAGAGAAACTAGATACAAACATAATATAGGTGACACAGTCGCTAGGTTAGAA----------------------------------------CTTGTGAATACAGC--AGTCTTCAG---AAGTCTCCAGACAA-TGTTAT--CCATATCATACCAGTACATAAGCTGT-GGAAAGAGGGAGCTGAAGAATTTCTGAAGAAATCGTAGATTTCA
i mm10.chr8                C 0 C 0
s canFam3.chr16             17900212 208 -  59632846 AAATAGATGGAATATGCATTAGATAGGTTGAAAGATAAACTAGTAGAG---ACataaat-taatataaataacattttccctaaattatga-atatttatacataaaaaatatataaata-----------cttataaataCCTCAGAACCTTTAGAAA---------------TGTCTT--------------AGTGCCTGGATTATAAAAAGCAATGATTAGAAGCATTCCTAAAGAATTGAAAGACTCTA
i canFam3.chr16            I 193 I 2816
e panTro4.chr4             192915934 35667 + 193495092 M

a score=41163.000000
s hg38.chr4_KI270925v1_alt    229244 24 +    555799 Ggtct---------gtttttagaagtaaagttt
s ponAbe2.chr4_random        3886618 24 -  23176937 Tgtct---------gtttttagaaataaagttt
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113789486 24 + 115148730 Tgcct---------gtttttagaaataaagttt
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183607442 24 + 184069350 Tgtct---------gtttttagaaataaagttt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188991026 24 + 189454096 Tgtct---------gtttttagaaataaagttt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178414070 24 + 178775436 TGtct---------gtttttagaaataaagttt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135354089 24 + 135778131 Tgtct---------gtttttagaaataaagttt
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190472218  4 - 190850796 -----------------------------gttt
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87606535 33 - 129401213 ATTTTTTTTTCttggttttttgagacagggttt
i mm10.chr8                C 0 I 1152
e canFam3.chr16             17900420 2816 -  59632846 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=449399.000000
s hg38.chr4_KI270925v1_alt    229268 205 +    555799 tcttagagcccagccacatctattcgattatgtgtttgtctgtggctgctttcacaacacaaaagcagagtgaagtagttgcaacgacttaactatatggccttcaaagccaaaaatgtGAGCAATAAATTATTTTTT--AATTTTTCTACTGTTATTTTTATGTGTAGGAAATGGTCTGCTTTGCTTAAAACTTGAGGCTCCTCTA
s ponAbe2.chr4_random        3886642 207 -  23176937 tctgggagcacagccacatctattcgattatgtgtttgtctgtggctgctttcacaacgcaaaagcagagcgaagtagttgcaacgacttaactatatggccttcaaagccaaaaatgtGAGaaataaattattttttttaatttttCTGCTATTATTTTTATATGTAGGAAATGGTCTGCTTTGCTTAAAACTTGCGGCTCCTCTA
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113789510 205 + 115148730 tctgggagcacagccacatctattcgattatgtgtttgtctgtggctgctttcacaacgcaaaagcaaagttaagtagttgcaacgacttaactatacagcattcaaagccaaaaatGTAAGAAATAAATTATTTTTT--AATTTTTCTACTGTTATTTTTATATGTAGGAAATGATCTGCTTTGCTTAAAACTTGCGGCGCCTCTA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183607466 203 + 184069350 tcttggagcacagccacatctgttcgattatgtgtttgtctgtggctgcttccaaaatgcaaaagcagagttgagtagttgcaacgacttaactataaggccttcaaagccaaaaat-TGAGCaataaattatttttt--aa-tattctactattatttttatatGTAGGAAATGATCTGCTTTGCTTAAAACTTACGGCTCCCCTA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188991050 204 + 189454096 tcttggagcacagccacatctgttcgattatgtgtttgtctgtggctgctttcaaaatgcaaaagcagagttgagtagttgcaacgacttaactataaggccttcaaagccaaaaat-TGAGCAATAAATTATTTTTT--AATTTTTCTACTATTATTTTTATATGTAGGAAATGATCTGCTTTGCTTAAAACTTACGGCTCCCCTA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178414094 205 + 178775436 tcttgGAGCACAGCCACATCTGTTCGATCATGTgtttgtctgtggctgctttcaaaatgcaaaagcagagttgagtagttgcaacgaCTTAACTATAAGGCCTTCAAAGCCAAAAATGtgagcaataaattatttttt--aatttttctactgttatttttatatgtaggAAATGATCTGCTTTGCTTAAAACTTACGGCTCCCCTA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135354113 205 + 135778131 tcttggagcacagccacatctgttcaactatgtgtttgtctgtggctgctttcaaaatgcaaaagcagagttaagtagttgcaacaacttaactataagaccttcaaagccaaaaatgtGAGCAATAAATTATTTTTT--AATTTTTCTACTATTATTTTTAAATGTAGGAAATGATCTGCTTTACTTAAAACTTACGGCTCCCCTA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190472222 205 - 190850796 tctgggagaacagccacccctatttgattatgcgtttgtctgtggctgctttcacggtgcaaaaacagaattacgtagctgtaatgacttaactctatggtcttccaagccaaaaatgtGAGCaataaattatttatt--aatttttCTACCCTTGTCTTTGTATGTAGGAAATGATCTGCTTTGCATGAAACCTGCAGCTCCTCTA
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87606568 1152 - 129401213 I
e canFam3.chr16             17900420 2816 -  59632846 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=1927646.000000
s hg38.chr4_KI270925v1_alt    229473 778 +    555799  
s ponAbe2.chr4_random        3886849 788 -  23176937  
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113789715 776 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183607669 775 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188991254 771 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178414299 775 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135354318 775 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190472427 784 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17903236 823 -  59632846  
i canFam3.chr16            I 2816 I 1
e mm10.chr8                 87606568 1152 - 129401213 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=670946.000000
s hg38.chr4_KI270925v1_alt    230251 316 +    555799 attcatttatttttgagacagagtctctgtatgtcacccaggctggagtgcagtggtgcaatctcagctcactgcaacctctgcttgggagttcaagcgattctcctgcctcagtctcctgagtagctgggactacaggcacccaccaacatgtctggctaatttttgtatttgtagtagagacagggtttcaccatgtttgccaggctggtcttgaactcctgacctcaagtgatccgcctgcctcagcctcccaaagtgctgggattacaggtgtcagccaccgcgcccagTTGATATGATCAGATTTTATGTT
s ponAbe2.chr4_random        3887637 316 -  23176937 attcatttatttttgagacagagtctcacgatgtcacacaggctggagtgcagtggtgcaatctcagctcactgcaacctctgcttccgagttcaagcaattctcctgcctcagcctcctgagtagctgggactacaggtacccaccaacatgtctggctaatttttgtatttgtagtagagacagggtttcaccatgtttgccaggctggtcttgaactccggacctcaagtaatctgcctgcctcagcctcccaaagtgctgggattacaggtgtcagccactgcacctggctGATATGATCAGATTTTATGTT
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113790491 316 + 115148730 attcatttatttttgagacagagtcttgctgtgtcacccaggctagagtgcagtgctgcaatctcagctcactgcaacctctgcttccgagttcaagcgattctcctgcctcagcctcctgagtagctgggactacaggcacccaccaacatgtctggctaatttttgtatttgtagtagagacagggtttcaacatgtttgccaggcttgtcttgaactcctgacctcaagtgatctgcctgcctcagcctcccaaagtgctgggattacaggcatcagccaccacgcccagcTTATATGATCAGATTTTATGTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183608444 315 + 184069350 attcatttatttttgagacagagtctcactatgtcacccaggctggagtgcagtggtacaatctcaactcactgcaccctctacttctgagttcaagcgattctcctgcctcagcctgctgagtagctggga-tacaggcacccaccaacatgtgcacctaatttttgtatttgtagtagagacagagtttcaccattgtggccaggctggtcttgaactcctgacctcaagtgatccacccgcctcagcctcccaaagtgctgggattacaggtgtgagccaccacacccggTTGATATGATCAGATTTTATGTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188992025 315 + 189454096 ATTCAtttatttttgagacagagtctcgctatgtcacccaggctggagtgcagtggtacaatctcaactcactgcaacctctacttctgagttcaagctattctcctgcctcagcctgctgagtagctggga-tacaggcacccaccaacatgtgcacctaatttttgtatttgtagtagagacagagtttcaccattgtggccaggctggtcttgaactcctgacctcaagtgatccacccgcctcagcctcccaaagtgctgggattacaggcgtgagccaccacacccggTTGATATGATCAGATTTTATGTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178415074 314 + 178775436 attcatttatttttgagacagagtctcgctatgtcacccaggctggaatgcagtggtacaatctcaactcactgcaacctctacttctgagttcaagcgattctcctgcctcagcctgctgagtagctggga-tacaggcacccaccaacacgtgcacctaatttttgtatttgtagtagagacagag-ttcaccattgtggccaggctggtcttgaactcctgacctcaagtgatccactctcctcagcctcccaaagtgctgggattacaggcgtgagccaccacacctggttgataTGATCAGATTTTATGTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135355093 315 + 135778131 attcatttatttttgagacagagtctcgctatgtcacccaggctggagtgcaatggtgcaatctcaactcactgcaacctctgcttctgagttcaagcaattctcctgcctcagcctcttgagtagctggga-tacaggcacccaccaacatgtccacctaatttttgtatttgtagcagagacagggttttaccatagtggccaggctggtcttgaactcctgacctcaagtgatccacccgcctcagcctcccaaagtgctgagattacaggcgtgagctaccgcacccggTTGATATGATCAGATTTTATGTT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190473211 289 - 190850796 attcattcaGttttgaaac--agtcttgctatgttacccaggctggagtgcagtggcgcaatctcggctcactgcaacctctgcttccagagtcaagtgattctgttgcctcagcctcctgagtagctgggactacaggtgcccaccaccacacctgactaataattgtatttttagtagagacggagt------------------------tggaactcctgaattccagtgatccacccaccccagccgcctaaagtgctgagattaca-gcctaagccaccacacacagctgatgtgatcagattttatgtt
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87606568 1152 - 129401213 I
e canFam3.chr16             17904059   1 -  59632846 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=113710.000000
s hg38.chr4_KI270925v1_alt    230567 65 +    555799 AGAAAATGCACACTCAGggccgggtgaggtgtctcattcctgtaatcccagcactttgggaggcc
s ponAbe2.chr4_random        3887953 65 -  23176937 AGAAAATGCACACTCGGggctgggcgaggtgtctcatttctgtaatcccagcactttgggaggcc
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113790807 65 + 115148730 AGAAAATGCACACTCGGggccgggcgaggtgtctcattcctgtaatcccagcactttaggaggct
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183608759 65 + 184069350 AGAAAATGCACACTTGGggccgggcctggtggctcatgcctgtaatcccagcactttgggaggcc
i rheMac3.chr5             C 0 M 314
s macFas5.chr5             188992340 65 + 189454096 AGAAAATGCACACTTGGggccgggcctggtggctcatgcctgtaatcccagcactttgggaggcc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178415388 65 + 178775436 AGAAAATGCACACTcggggccgggcctggtggctcatgcctgtaatcccagcactttgggaggcc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135355408 65 + 135778131 AGAAAATGCACACTCGGggccaggcgtagtggctcatgcctgtaatcccagcactttgggaggcc
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87606568 1152 - 129401213 I
e canFam3.chr16             17904059  1 -  59632846 I
e calJac3.chr3             190473500  0 - 190850796 C
e panTro4.chr4             192915934 35667 + 193495092 M

a score=92631.000000
s hg38.chr4_KI270925v1_alt    230632 73 +    555799 aaagcgggcagatcacaaggtcaggagattgagaccatcctggccaacatggtgaaaccctttctctactaaa
s ponAbe2.chr4_random        3888018 73 -  23176937 gaggcgggcagatcacaaggtcaggagattgagaccatcctggccaatatggtgaaactctttctctactaaa
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113790872 73 + 115148730 gaggtgggcagatcacaaggtcaggagattggaaccatcctggccaatatggtgaaaccctttctctgctaaa
i nomLeu3.chr7b            C 0 M 100
s macFas5.chr5             188992405 73 + 189454096 gaggcaggcagatcacaaggtcaggagattgagaccatcctggccaatatgatgaaaccctgtctctaacaaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178415453 73 + 178775436 gaggcaggcagatcacaaggtcaggagattgagaccatcctggccaatatgatgaaaccctgtctctaataaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135355473 73 + 135778131 gaggcgggcagatcacaaggtcaggagattgagaccatcctggccaatatgatgaaaccctgtctctaccaaa
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87606568 1152 - 129401213 I
e canFam3.chr16             17904059  1 -  59632846 I
e calJac3.chr3             190473500  0 - 190850796 C
e rheMac3.chr5             183608824 314 + 184069350 M
e panTro4.chr4             192915934 35667 + 193495092 M

a score=131352.000000
s hg38.chr4_KI270925v1_alt    230705 158 +    555799 aatacaaaaattagttgggcatgatgatgggtgcctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaaccaggaagtcagagattgcagtgagtcgagatcaggccactgcatcccaacatggtgacagagcgagactctgtttc
s ponAbe2.chr4_random        3888091 158 -  23176937 aatacaaaaattagctgggcatggtggtgggtgcctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaaccaggaagtcagaggttgcagtgagtccagattgctccactacaccccaacctggtgacagagcgagactctgtttc
i ponAbe2.chr4_random      C 0 C 0
s macFas5.chr5             188992478 158 + 189454096 aatgcaaaaattagctgggcatgatggcgggcacctgtaatcccatctactcaggaggctgaggcaggagaatcatttgaaccgggaagtcagaggttgcagtgagttgagatcgtgccactacaccccaacctggtgacagagtaagacactgtttc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178415526 158 + 178775436 aatgcaaaaattagctgggcatgatggcgggcacctgtaatcccatctactcaggaggctgaggcaggagaatcacttgaaccgggaagtcagaggttgcagtgagttgagatcgtgccactacaccccaacctggtaacagagtaagacactgttta
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135355546 158 + 135778131 aatgcaaaaattagctgggcatgatggcgggcacctgtaatcccatctactcaggagactgaggcaggagaatcacttgcaccgggaagtcagaggttgcagtgagtcgagatcgtgccactacaccccaacctggtgacagagtgagactctgtttc
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87606568 1152 - 129401213 I
e canFam3.chr16             17904059   1 -  59632846 I
e calJac3.chr3             190473500   0 - 190850796 C
e rheMac3.chr5             183608824 314 + 184069350 M
e nomLeu3.chr7b            113790945 100 + 115148730 M
e panTro4.chr4             192915934 35667 + 193495092 M

a score=15844.000000
s hg38.chr4_KI270925v1_alt    230863 27 +    555799 aaaaaaaaaaaaaaaaaaaaagaagaa
s ponAbe2.chr4_random        3888249 19 -  23176937 aaaaaaaaaaaaaagaaaa--------
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113791048 19 + 115148730 gaaaggaaagaaaagaaaa--------
i nomLeu3.chr7b            M 100 C 0
s macFas5.chr5             188992636 27 + 189454096 aaaaaaaaagaaagaaagaaagaaaga
i macFas5.chr5             C 0 I 26
s papAnu2.chr5             178415684 27 + 178775436 aaaaaaaaaaaaaaaaaaaaaaaaaaa
i papAnu2.chr5             C 0 I 350
s chlSab2.chr7             135355704 23 + 135778131 aaaaaaaaaaaaaaagaaagaaa----
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87606568 1152 - 129401213 I
e canFam3.chr16             17904059  1 -  59632846 I
e calJac3.chr3             190473500  0 - 190850796 C
e rheMac3.chr5             183608824 314 + 184069350 M
e panTro4.chr4             192915934 35667 + 193495092 M

a score=12433.000000
s hg38.chr4_KI270925v1_alt    230890 10 +    555799 gaaAGAAAAG
s ponAbe2.chr4_random        3888268 10 -  23176937 gaaaggaaaG
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113791067 10 + 115148730 gaaaagaaag
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188992689 10 + 189454096 gaaagaaaag
i macFas5.chr5             I 26 C 0
s papAnu2.chr5             178416061 10 + 178775436 gaaagaaaag
i papAnu2.chr5             I 350 C 0
s chlSab2.chr7             135355727 10 + 135778131 gaaagaaAAG
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87606568 1152 - 129401213 I
e canFam3.chr16             17904059  1 -  59632846 I
e calJac3.chr3             190473500  0 - 190850796 C
e rheMac3.chr5             183608824 314 + 184069350 M
e panTro4.chr4             192915934 35667 + 193495092 M

a score=7644.000000
s hg38.chr4_KI270925v1_alt    230900 4 +    555799 AAAA
s ponAbe2.chr4_random        3888278 4 -  23176937 AAAA
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113791077 4 + 115148730 aaaa
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183609138 4 + 184069350 AAAA
i rheMac3.chr5             M 314 C 0
s macFas5.chr5             188992699 4 + 189454096 aaaA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178416071 4 + 178775436 aaaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135355737 4 + 135778131 AAAA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87606568 1152 - 129401213 I
e canFam3.chr16             17904059 1 -  59632846 I
e calJac3.chr3             190473500 0 - 190850796 C
e panTro4.chr4             192915934 35667 + 193495092 M

a score=72072.000000
s hg38.chr4_KI270925v1_alt    230904 30 +    555799 AGAAAATGCATGCTCAGTTGCCTCCATAGA
s ponAbe2.chr4_random        3888282 30 -  23176937 AGAAAATGCATGCTCGGTTGCCTCCATAGA
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113791081 28 + 115148730 --gaaaTGCATGCTCGGTTGCCTCCATAGA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183609142 30 + 184069350 AGAAAATGCATGCTTGGTTGTCTCCATAGA
i rheMac3.chr5             C 0 I 113
s macFas5.chr5             188992703 30 + 189454096 AGAAAATGCATGCTTGGTTGTCTCCATAGA
i macFas5.chr5             C 0 I 30
s papAnu2.chr5             178416075 30 + 178775436 agaaaatgcatgctTGGTTGTCTCCATAGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135355741 30 + 135778131 AAAAAATGCATGCTCGGTTGTCTCCATAGA
i chlSab2.chr7             C 0 I 1
s calJac3.chr3             190473500 30 - 190850796 agaaaatgcatgcttgctaacctccatgga
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17904060 26 -  59632846 agaaaatgcactc----tggccttaatata
i canFam3.chr16            I 1 C 0
e mm10.chr8                 87606568 1152 - 129401213 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=4741.000000
s hg38.chr4_KI270925v1_alt    230934 4 +    555799 GAGA
s ponAbe2.chr4_random        3888312 4 -  23176937 GAGA
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113791109 4 + 115148730 GCGA
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188992763 4 + 189454096 GAAG
i macFas5.chr5             I 30 C 0
s chlSab2.chr7             135355772 4 + 135778131 GAGA
i chlSab2.chr7             I 1 I 25
s calJac3.chr3             190473530 4 - 190850796 gaaa
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17904086 4 -  59632846 gaga
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87606568 1152 - 129401213 I
e papAnu2.chr5             178416105 0 + 178775436 C
e rheMac3.chr5             183609172 113 + 184069350 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=9210.000000
s hg38.chr4_KI270925v1_alt    230938 6 +    555799 AGAGAT
s ponAbe2.chr4_random        3888316 6 -  23176937 AGAGAT
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113791113 6 + 115148730 AGAGAT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188992767 6 + 189454096 TGAGAT
i macFas5.chr5             C 0 I 13
s papAnu2.chr5             178416105 6 + 178775436 AGAGAT
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190473534 6 - 190850796 agagat
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17904090 6 -  59632846 acagat
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87606568 1152 - 129401213 I
e chlSab2.chr7             135355776 25 + 135778131 I
e rheMac3.chr5             183609172 113 + 184069350 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=-1906.000000
s hg38.chr4_KI270925v1_alt    230944 1 +    555799 -G
s ponAbe2.chr4_random        3888322 1 -  23176937 -G
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113791119 1 + 115148730 -G
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183609285 1 + 184069350 -G
i rheMac3.chr5             I 113 C 0
s macFas5.chr5             188992786 1 + 189454096 -G
i macFas5.chr5             I 13 C 0
s papAnu2.chr5             178416111 1 + 178775436 -G
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190473540 1 - 190850796 -a
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17904096 1 -  59632846 t-
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87606568 1152 - 129401213 I
e chlSab2.chr7             135355776 25 + 135778131 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=903523.000000
s hg38.chr4_KI270925v1_alt    230945 354 +    555799 GAAGTGAGACTG-----------------------------------------------AGGGAAGACCAGCCAGGAGGCTGCTGTGTCCAGTGAAGGCTGAGGAGAGCTGAGAGGGCCG--------------------------------GGCAGGGGAAATGGAGGGGAGGGAATAGGTTT--GAGAGG---TTTTGGAGAAAGATCCCATAGCACATGAGACGGCTGTATGGAATGAGGGAGAGAGAAGAGTCTGGAAAGTCCC---TGGTTTCTAGT-TGGACAACCTG----GTGATGATGCTATTTACTATGACAGGGACACAAAAGCGGAAGGTAGAGAT----------GGGGGCAGGGGATGGGGAACTGCAATTAGAT-AAGATTGCTTT-AAGCTTCATGCAGCTGTGAGATCTCCAAGCCACGGTGCCCAGGGCCAG-TCAGAGCT
s ponAbe2.chr4_random        3888323 358 -  23176937 GGAGTGAGACTG-----------------------------------------------AGGGAAGACCAGCCAGGAGGCTGCTGTGTCCAATGAAGGCTGAGGAGAGCTGAGAGGGCCG--------------------------------GGCAGGGGAAATGGAGGGGAGGGAATAGGTTT--GAGAGG---TTTGGGAGAAAAAGCCCATGGCACATGAGATGGCTGTATGGAACGAGGGAGAGAGAAGAGTCTGGAAAGTCCC---TGGTTTCTAGC-TGGACAACCTGACTGGTGATGACGTTATTTACTATGACAGGGACACAAAAGCGGAAGGTAGAGAT----------GTGGGCAGGGGATGGGGAACTGCAATTAGAT-AAGATTGCTTT-AAGCTTCATGCAGCTGTGAGATCTCCAAGCCACGGTGCCCAGGGCCAG-TCAGACCT
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113791120 403 + 115148730 GAAGTGAGACTGAGGGAAGACCAGAAAGCAagactgagggaagactggaagtgagactcagggaagaccagcgaggaggctgctgtgtccaatgaagcctgaggagagctgagagggcca--------------------------------ggcaggggaaatggaggggagagaata-gttt--gagagg---ttttggagaaagagcccatagcacatgagatggctgtatggaatgagggagagagaagagtctggaaa-tccc---tggtttctagt-tggacaacctgactggtgatgatgctatttactatgacagggaCACAAAAGCATAAGGTAGAGAT----------GCAGGCAGGGGATGGGGAACTGCAATTAGAT-AAGATTGCTTT-AAGCTTCATGCAGCTGTGAGATCTCCAAGCCACGGTGCCCAGGGCCAG-TCAGAGCT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183609286 358 + 184069350 GAAGTGAGACTG-----------------------------------------------GGggaagaccagccagaaggctgctgtgtccagtgaaggctgaggagagctgagagggcca--------------------------------ggcaggggaaatggaggggaggaaatatgttt--gagaga---ttttggagaaagagcccatagcacatgagatggctgtatggaatgaggaagggagaagagtctggaaagtccc---tggtttctaac-tggacaacctgactggtgatgatgctatttactatgatagggacacagaagcagaaggtggagat----------gtgggcaggggaTGGGGAACTGCAATTAGAT-AAGATTGCTTT-AAGCTTCATGCAGCTGTGAGATCTCCAACCCATGGTGCCCAGGGCCAG-TCAGAGCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188992787 358 + 189454096 GAAGTGAGACTG-----------------------------------------------AGGGAAGACCAGCCAGGAGGCTGCTGTGTCCAGTGAAGGCTGAGGAGAGCTGAGAGGGCCA--------------------------------GGCAGGGGAAATGGAGGGGAGGAAATATGTTT--GAGAGA---TTTTGGAGAAAGAGCCCATAGCACATGAGATGGCTGTATGGAATGAGGAAGGGAGAAGAGTCTGGAAAGTCCC---TGGTTTCTAAC-TGGACAACCTGACTGGTGATGATGCTATTTACTATGATAGGGACACAGAAGCAGAAGGTGGAGAT----------GTGGGCAGGGGATGGGGAACTGCAATTAGAT-AAGATTGCTTT-AAGCTTCATGCAGCTGTGAGATCTCCAACCCATGGTGCCCAGGGCCAG-TCAGAGCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178416112 358 + 178775436 GAAGTGAGACTG-----------------------------------------------AGGGAAGACCAGCCAGGAGGCTGCTGTGTCCAGTGAAGGCTGAGGAGAGCTGAGAGGGCCA--------------------------------GGCAGGGGAAATGGAGGGGAGGAAATATGTTT--GAGAGA---TTTTGGAGAAAGAGCCCATAGCACATGAGATGGCTGTATGGAATGAGGAAGGGAGAAGAGTCTGGAAAGTCCC---TGGTTTCTAAC-TGGACAACCTGACTGGTGATGATGCTATTTACTATGATAGGGACACAGAAGCTGAAGGTGGAGAT----------GTGGGCAGGGGATGGGGAACTGCAATTAGAT-AAGATTGCTTT-AAGCTTCATGCAGCTGTGAGATCTCCAACCCATGGTGCCCAGGGCCAG-TCAGAGCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135355801 358 + 135778131 GAAGTGAGACTG-----------------------------------------------AGGGAAGACCAGCCAGGAGGCTGCTGTGTCCAGTGAAGGCTGAGGAGAGCTGAGAGGGCCA--------------------------------GGCAGGGGAAATGGAGGGGAGGAAATATGTTT--GAGAGG---TTTTGGAGAAAGAGTCCATAGCACATGAGATAGCTGTATGGAATGAGGAAGGGAGAAGAGTCTGGAAAGTCCC---TGGTTTCTAAC-TGGACAACCTGACTGGTGATGATGCTATTTACTATGATAGGGACACAGAAGCAGAAGGTGGAGAT----------GTGGGCAGGGGATGGGGAACTGCAATTAGAT-AAGATTGCTTT-AAGCTTCATGCAGCTGTGAGATCTCCAACCCATGGTGCCCAGGGCCAG-TCAGAGCT
i chlSab2.chr7             I 25 C 0
s calJac3.chr3             190473541 359 - 190850796 gaagtgagactg-----------------------------------------------aaggaagcctagtcaggaggctgctgtgtgcactgaaggctgaggagagccacgaaggcca--------------------------------ggcaggggaagggcaggggagggaataagtttgagagagg---ttctggagaagaagcccacaggacatgggatggctatgtggagtgagggagagagaagagtctggaag-tccc---tggtttctggt-tggacagccgggctggtgatgacgctatttactatgacaggaccacgaaagtggaaggtggagat----------gcaggga-ggGCCAGGGAACTGGGATTAGGTCAAGATTGCTCT-AAGCTTCATGCAGTTGTGAAATCTCCAAACCATGGTGCCCAGGGCCAG-TCAGAGCT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17904097 399 -  59632846 gaatataaactg-----------------------------------------------gaggaagaccagccaggaagctgctgcatcagataaacgatgctggcagctgggagaggcagaggcagtggcagtagtagtggcagtggcagtggcagtggatttggagggtaggga-----ctt--gagagacattttaagagaaagaacccacagaacttaggttggatatgtggagagagagaaagggaaggatctgaaaaatcccctttggtatctggcttggacaacctggtggatgatgataccacttattatgacagg-----aaaaacaaaaggaagagacaaacctaggggtgggaaggtattaggggACAGGAAATGGTG-ATAAGCACTGTGAGGCTTTAAGCAGCCATGAGATCCCCAAGTGATGGGGCCCTGGGTGAGATCAGACTT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87606568 1152 - 129401213 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=1319042.000000
s hg38.chr4_KI270925v1_alt    231299 595 +    555799  
s ponAbe2.chr4_random        3888681 594 -  23176937  
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113791523 608 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183609644 589 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188993145 589 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178416470 589 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135356159 590 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190473900 580 - 190850796  
i calJac3.chr3             C 0 I 297
s mm10.chr8                 87607720 504 - 129401213  
i mm10.chr8                I 1152 C 0
s canFam3.chr16             17904496 918 -  59632846  
i canFam3.chr16            C 0 C 0
e panTro4.chr4             192915934 35667 + 193495092 M

a score=49334.000000
s hg38.chr4_KI270925v1_alt    231894 16 +    555799 GAAAATAGTCAAACAA----------
s ponAbe2.chr4_random        3889275 16 -  23176937 GAAAATAGTCAAACAA----------
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113792131 16 + 115148730 GAAAATAGTCAAACAA----------
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183610233 16 + 184069350 GAAAATAGTCAAACAA----------
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188993734 16 + 189454096 GAAAATAGTCAAACAA----------
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178417059 16 + 178775436 GAAAATAGTCAAACAA----------
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135356749 16 + 135778131 GAAAATAGTCAAACAA----------
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190474777 16 - 190850796 gaaaaTAGTCAAACAA----------
i calJac3.chr3             I 297 C 0
s mm10.chr8                 87608224 16 - 129401213 CAAAATAGTAGAACAA----------
i mm10.chr8                C 0 I 831
s canFam3.chr16             17905414 26 -  59632846 CAAAGTAGTAAAGTAAAGTAGTAAAA
i canFam3.chr16            C 0 C 0
e panTro4.chr4             192915934 35667 + 193495092 M

a score=38559.000000
s hg38.chr4_KI270925v1_alt    231910 16 +    555799 CAATTAAGCTAGGAAA
s ponAbe2.chr4_random        3889291 16 -  23176937 CAATTAAGCTAGGAAA
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113792147 16 + 115148730 CAATTAAGCTGAGCGA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183610249 16 + 184069350 CAATTAAGCTATGGAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188993750 16 + 189454096 CAATTAAGCTATGGAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178417075 16 + 178775436 CAATTAAGCTATGGAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135356765 16 + 135778131 CAATTAAGCTATGGAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190474793 16 - 190850796 CAATTACACTATGGAA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17905440 16 -  59632846 CAACTAGCCTATGGAA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87608240 831 - 129401213 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=3831127.000000
s hg38.chr4_KI270925v1_alt    231926 1291 +    555799  
s ponAbe2.chr4_random        3889307 1319 -  23176937  
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113792163 1292 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183610265 1287 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188993766 1287 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178417091 1285 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135356781 1292 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190474809 1273 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87609071 1343 - 129401213  
i mm10.chr8                I 831 I 2964
s canFam3.chr16             17905456 1331 -  59632846  
i canFam3.chr16            C 0 C 0
e panTro4.chr4             192915934 35667 + 193495092 M

a score=842594.000000
s hg38.chr4_KI270925v1_alt    233217 347 +    555799 TAATTGGAAATGTGTAAAAATAATTCAAAGGAG-TAGTAAGAAAAATG-CATTTGGGTTCATTTacttactcattcaaaaagcatttatggagtgcttcattttttcgggtacttttctagggcttggaaatatggcagtgaggatgacagatgggatgtttgttgccttcaatcaccttttattctactatgagtagagagacaatggacaggccagcaaatactcagtcaggataattgtagatggtggg---aagtgtggtggagaaaataaaaagggtaatgtgatagggaccgcacatttgg-gagggcggctgggaaactctctgggaagcagtg---cttgagagggaa
s ponAbe2.chr4_random        3890626 347 -  23176937 TAATTGGAAATGTGTAAAAATAATTCAAAGGAT-TAGTAAGAAAAATG-CATTTGGGTTCATTTacttactcattcaaaaagcatttatggagtgcttcatttgttcgggtacttttctagggcttggaaatacggcagtgaggatgacagatgggatgtttgttgccttcaatcaccttttattctactacgagtagagagacaatggacaggccagcaaatactcagtcaggataactgtagatggtggg---aagtgtggtggagaaaacaaaaagggtaatgtgatagggaccgcacatttgg-tagggcggctgggaaactctctgggaagcagtg---cttgagagggaa
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113793455 347 + 115148730 TAATTCGAAATGTGTAAAAATAATTCAAAGGAT-TAGTAAGAAAAATG-CATTTGGGTTCATTTGCttactgattcaaaaagcatttatggagtgcttcatttgttcgggtacttttctatggcttggaaatacggcagtgaggatgacagatgggatatttgttgcattcaatcaccttttattctactacgagtagagagacaatggacaggccagcaaatactcagtcaggataattgtagatagtggg---aagtgtggtggagaaaataaaaagggtaatgtgatagggactgcacatttgg-tagggcggctggaaaactctctgggaagcagtg---cttgagagggaa
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183611552 336 + 184069350 TAATTGGAAATGAGTAAAAATAATTCAAAGCAG-TAGTAAGAAAAATG-CATTTGGGTTCATTTacttactcactcaaaaagcatttatggagtgcttcatttgttcgggtacttttctaaggcttggaaatatgacagtgaggatgacagatgggatatttgttgtcttcaatcaccttttattgtactacgagtagagagacaatggacaggccagcaaat-----------gtagatgtagatggtggg---aattgtcatggagaaaataaaaagggtaTTGTGATAGCGACTGCACAATTGG-TAGGGTGGCTGGGAAGCTCTCTGGGAAGCAGTG---CTTGAGAGGGAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188995053 336 + 189454096 TAATTGGAAATGAGTAAAAATAATCCAAAGCAG-TAGTAAGAAAAATG-CATTTGGGTTCATTTacttactcactcaaaaagcatttatggagtgcttcatttgttcgggtacttttctaaggcttggaaatatgacagtgaggatgacagatgggatatttgttgtcttcaatcaccttttattctactacgagtagagagacaatggacaggccagcaaat-----------gtagatgtagatggtggg---aattgtcatggagaaaataaaaagggtaCTGTGATAGCGACTGCACAATTGG-TAGGGTGGCTGGGAAGCTCTCTGGGAAGCAGTG---CTTGAGAGGGAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178418376 336 + 178775436 taattggaaatgagtaaaaataattcaaagcac-TAGTAAGAAAAATG-CATTTGGGTTCATTTACTTACTCACTCAAAAAGCATTTATGGAGTGCTTCATTTGTTCGGGTACTTTTCTAAGGCTTGGAAATATGACAGTGAGGATGACAGATGGGATATTTGTTGTCTTCAATCACCTTTTATTCTACTACGAGTAGAGAGACAATGGACAGGCCAGCAAAT-----------GTAGATGTAGATGGTGGG---AATTgtcatggagaaaataaaaagggtaCTGTGATAGCGACTGCACAATTGG-TAGGGTGGCTGGGAAGCTCTCTGGGAAGCAGTG---CTTGAGAGGGAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135358073 343 + 135778131 TAATTGGAAATGTGTAAAAACAATTCAAAGCAG-TAGTAAGAAAAATG-CATTTGGGTTCatttactt----actcaaaaagcatttatggagtgcttcatttgtttgggtacttttctagggcttggaaatatggcagtgaggatgacagatgcgatatttgttgtcttcaatcaccttttgttctactacaagtagaaagacaatggacaggccagcaaatactcgatcaggataaatgtagatggtggg---aattgtcatggagaaaataaaaagggtaCTGTGATAGCGACTGCACGTTTGG-TAGGGTGGCTGGGAAGCTCTCTGGGAAGCAGTG---CTTGAGAGGGAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190476082 344 - 190850796 TGATTGGAAATGTGTCAAAATAATTCAAAGCCA-TAGTAAGAAAAATG-CATTTGGGTTCATTTACCTactcattcaaaaagcatttatggagtgcttcattcaatcaggtacttttcta-ggctcggaaatacggccgtgaggatgacaggtgagatatttgttgttcttgagcaccttttgttctgctatga-tagagggacaatggacaggccagcaggtacttaatcaggatagttgtacatggtggg---aagcatcagggagaaaatatgaagGGTACTG-GATAGCAACTGCACATGTGG-TGGGGCGGCTGCGGAGCTCTCTGGGAAGCAGCG---CCTGAGGGGGAA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17906787 350 -  59632846 TAAATTGAAATGTATAAAA--AATTCAAAGAAGTTAGTAGGAAAAATGTCAATTAAATTCATCTactcattcatttaaaagatattaatggagtgccacctatgtgccagtacttttctagggtttaggaataccatggtgaagatgacaaacaagattcttattg---tcaagcaccctatattctaccaagataagagagacaataaat-ggtaagcacatacataatcaaaattatttcaagtggtgggagaaattgttgtgcagaaactgaaaagctcaatgtgacaagccctacaaactgagccaagagggtaaggaaaccttctcttaagagatgatccttgagatgaga
i canFam3.chr16            C 0 I 1219
e mm10.chr8                 87610414 2964 - 129401213 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=1557542.000000
s hg38.chr4_KI270925v1_alt    233564 782 +    555799  
s ponAbe2.chr4_random        3890973 814 -  23176937  
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113793802 776 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183611888 772 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188995389 773 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178418712 774 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135358416 779 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190476426 759 - 190850796  
i calJac3.chr3             C 0 I 306
e mm10.chr8                 87610414 2964 - 129401213 I
e canFam3.chr16             17907137 1219 -  59632846 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=622221.000000
s hg38.chr4_KI270925v1_alt    234346 301 +    555799 caGTCGCATATCTTAATCCCCTAAGAACTCccaatatccccattttacaggagaggaaaccaatggccagaaagatgcagctttccaagatcacccaggaaataaaggatggagctaagagtgggtcacttcccgactcaatttatgct----------------------------------------------------------------------------------accttgtctcagAAGAGGATGCCTCTGAGGCGGGCATGTAGTTGCCCCTGCAG---GACCAAGACAATGGGGCCAGCTGGATTCCACTTTATACAACCAATATGgtctgtgtctgtttggatttctatctcagaatgcaatagacagagtggctt
s ponAbe2.chr4_random        3891787 301 -  23176937 caGTCGCATACCTTAATCCCCTAAGAACTCccaatatccccattttataggagaggaaatcaatggccagagagatgcagctttccaagatcacccaggaaataaaggatggagctaagagtaggtcacttcccgactcaatttatgct----------------------------------------------------------------------------------accttgtctcagAAGAGGATGCCTCTGAGGCGGGCATGTGGTTGCCCCTGCAG---GACCAAGACAATGGGACCAGCTGGATTCCACTTTATACAACCGATATGGTCTGTGTCTGTTTGGATTTCTGTCTCAGAATGCAATAGACACAGTGGCTT
i ponAbe2.chr4_random      C 0 I 381
s nomLeu3.chr7b            113794578 301 + 115148730 caGTCGCATATCTTAATCGCCTAAGAAGTCccaatatccccattttacaggagagaaaaccaatggccagagagatgcagctttccaagatcacccaggaaataaaggatggagctaagagtaggtcacttcccgactcaatttatgct----------------------------------------------------------------------------------accttgtctcagAAGAGGATGCCTCTGAGGCGGGCATGTGGTTGCCCCTGCAG---GACGAAGACAGTGGGGCCAGCTGGATTCCACTTTATACAACCGATATGgtctgtgtctgtttggatttctatctcagaatacaattgacagagtggctt
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183612660 383 + 184069350 caGTCGCATATCTTAATCCCCTCAGAACTCCtaatatccccactttacaggagggaaaaccagcggccggagagatgtagctttccaagttcaccgaggaaataaaggatagagctaagagcgggtcacttcccgactccGTTTACGCCCGGAGAGATGTAGCTTTCCAAGTTCACCAAGGAAATAAAGGATGGAGCTAAGAACGGGTCACTTCCCGACTCCCTTTACGCTACCTGGTCTCGGAAGAGGCTGCCTCTGAGGCGGGCATGCGGTTGGCCCTGCAG---GATCAAGACAGTGGAGCCCGCTGGATTCCACTTGGTACGACCGATGTGGGCTGTgtctgtttggatttctatctcagaatgcagtggacacagcggctt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188996162 301 + 189454096 caGTCGCATATCTTAATCCCCTCAGAACTCCtaatatccccactttacaggagggaaaaccagcggccggagagatgtagctttccaagttcgccgaggaaataaaggatggagctaagagcgggtcacttcccgactccGTTTACGCC----------------------------------------------------------------------------------ACCTGGTCTCGGAAGAGGCTGCCTCTGAGGCGGGCATGCGGTTGGCCCTGCAG---GATCAAGACAGTGGAGCCCGCTGGATTCCACTCGGTACAACCGATGTGGGCTGTgtccgtttggatttctatctcagaatgcagtggacacagcggctt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178419486 301 + 178775436 CAGTCGCAAATCTTAATCCCCTAAGAACTCCTAATATCCCCACTTTACAGGAGGGAAAACCAGCGGCCGGAGACATGTAGCTTTCCAAGTTCACCGAGGAAATAAAGGATGGCGCTAGGAGCGGGTCACTTCCCGACTCCGTTTACGCC----------------------------------------------------------------------------------ACCTGGTCTCGGAAGAGGCCGCCTCTGAGGCGGGCATGCGGTTGGCCCTGCAG---GATCAAGACAGTGGAGCCCGCTGGATTCCGCTTGGTACGACCGATGTGGGCTGTGTCTGTTTGGATTTCTGCCTCAGAATGCAGTGGACACAGCGGCTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135359195 300 + 135778131 caGTCGCATATCTTAATCCCC-CAAAACTCCtaatatccccactttacaggagagaaaaccagtggccagagagatgtcgctttccaagttcatccgggaaataaaggatggagctaagagcgggtcacttcccgactccaTTCACGCT----------------------------------------------------------------------------------ACCTGGTCTCGGAAGAGGCTGCCTCTGAGGCGGGCATGCGGCTGGCCCTGCAG---GATCAGGACAGTGGAGCCCGCTGGATTCCACTTGGTACAAGCGATGTGgtctgtgtctgtttggatttccatctcagaatgcagtggacacagcggctt
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190477491 303 - 190850796 CAGCAGCATATCTTAATCCCCtaagaactcctaatatccccattttacaggagagaaaaccaatggccatagagatgt-gttttccaagatcacccaggaaataaatgatagagctaacagtgagtcaccccttgactcagttcacact----------------------------------------------------------------------------------ACCTTGTGTGCGAAGACAATGCATCTGAGGCGGGCATGCTGTTGACTCTGCAGGAAGACCAGGGCAGCAGAGCCAGCTGGATTCCACTTTATGCAACTGATATtgtctgtggctgcttggatttctatctcagaacacaatagacagagtggctt
i calJac3.chr3             I 306 C 0
e mm10.chr8                 87610414 2964 - 129401213 I
e canFam3.chr16             17907137 1219 -  59632846 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=52428.000000
s hg38.chr4_KI270925v1_alt    234647 37 +    555799 ataagcaatgaaggatttatttctc-acagttgtggag
s nomLeu3.chr7b            113794879 38 + 115148730 ataagcaatgaaggatttatttctcaacagttgtggaa
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183613043 37 + 184069350 ataagccatgagggatttatttctc-ccagctgtggag
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188996463 37 + 189454096 ataagccacgagggatttatttctc-ccagctgtggag
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178419787 37 + 178775436 ATAAGCCATGAGGGATTTATTTCTC-CCGGCTGTGGCG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135359495 37 + 135778131 ataggccgtgagggattgatttctc-ccggttgtggag
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190477794 37 - 190850796 ataagcaaagaaagtttcatttctc-acagttgtggag
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87610414 2964 - 129401213 I
e canFam3.chr16             17907137 1219 -  59632846 I
e ponAbe2.chr4_random        3892088 381 -  23176937 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=443497.000000
s hg38.chr4_KI270925v1_alt    234684 219 +    555799 gtgaaggagtccaaggtcaaggtgcagggagatttggcatctggtgagggctactgtccgggcttctggatggcgccttctcactgtggcctcccgtggctgaaggggacaggagccctctcctttataagggcaataagcccttcctggcctaatcgccttccaaaggccgtgcctcctaatactgtcttcctggggattagagtttt-aacatgaatt
s ponAbe2.chr4_random        3892469 212 -  23176937 gtgaaggagtcca-ggtcaag-tgcagg-agatttggcatctggtgagggctgctgtcctggcttctggatggcgc-tcctcactgcggcctcttgtggctgaaggg-acacgagccctctcctttataagggcaataagcccttcctggc-taatcgc-ttccaaaggccatgcctcctaatactgtcttcctggggattagggtttt-aacatgaatt
i ponAbe2.chr4_random      I 381 C 0
s nomLeu3.chr7b            113794917 219 + 115148730 gtgaagaagtccaaggtcaaggtgcagggagattcggcatctggtgagggctgctgtcctggcttctggatggtgccttctcactgtggcctcctgtggctgaaggggacgggagccctgtcctttataagggcaataagtccctgctggcctaatcaccttccaaaggccgtgcctcctaatactgttttcctggggattagggtttt-aacattaatt
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183613080 220 + 184069350 gtgaagaagtcggaggtgaagctgtaaggagactgggcctctggtgagggctgctgtcctggcttccgaatggcgccttctcactgcggcctcctgtggctgaagcggacgggagccctctcctttctaagggcagtaaggccctcctggcctaatcaccttccaaaggccgcgcctgctaatactgtcttcctggggattccggttttaaacatgaatt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188996500 220 + 189454096 gtgaagaagtcggaggtgaagctgtaaggagactgggcctctggtgagggctgctgtcctggcttccggatggcgcctcctcactgcggcctcctgtggctgaagcggacgggagccctctcctttctaagggcagtaaggccctcctggcctaatcaccttccaaaggccgcgcctgctaatactgtcttcctggggattccggttttaaacatgaatt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178419824 219 + 178775436 GTGAAGAAGTCGGAGGTGAAGCTGTAAGGGGACTGGgcctctggtgagggctgctGGCCTGGCTTCTGGATGGCGCCTTCTCACTGCGGCCTCCTGCGGGTGAAGCGGACGGGAGCCCTCTGCTTTCTGAGGGCAGTAAGGCCCTCCTggcctaatcaccttccaaaggccgcGCCTGCTAATACTGTCTTCCTGGGGATTCCGGTTTT-AACATGAATT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135359532 219 + 135778131 gtgaagaagtgcgaggtgaagctgtgaggagactgggcctctggtgagggctgccgtcctggcttccggatggcgccttctcactgtggcctcctgtggctgaagcggacgggagccctctgctttctaagggcagtaaggccctcctggcctaatcaccttccaaaggctgtgcctcctaatactaccttcctggggattcgggtttt-aacatgagtt
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190477831 219 - 190850796 gtgacagagtccaaggtcaagatgcgtggagatttggcttctgctgagggctgctgtcctgggttttgaatggcaccttctcaccgtgccctcctgtggctgaaggggacgggaactctctcttttataagggcaataaggtcctcatggcctaatcacctcccaaaggctgtgcttcctgatactaccttcttggggattagggtttt-aacatgaatt
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87610414 2964 - 129401213 I
e canFam3.chr16             17907137 1219 -  59632846 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=318868.000000
s hg38.chr4_KI270925v1_alt    234903 150 +    555799 tgggagggacttaaccattcagtccagagcGGATATTATGTCCCAGAATCCTCTAGCTGTGATGGAGCCACGCCGACCTCTGTGGTCTCCGCACC-TCCGCAGTGCAGG-CCAGG-CGTCTTCTAA---CTCAGCTCCAGCCGCAGAGCCC--------TGCTG
s ponAbe2.chr4_random        3892681 147 -  23176937 tgggagggacttgaacattcagtccagagAGGATATTACGTCCCG--ATCCTCTAGCTGTGATGGAGCCACAC-GACCTGTGTGGTCTTCGCGCC-TCCGCGGTGCAGG-CCAGG-CGTCTTCTGA---CTCATCTCCAGCCACCGAGCCC--------CGCTG
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113795136 149 + 115148730 tgggagggacctaaacattcagtccGGGGCGGATATTATGTCCCAGAATCCTGTAGCTGCGATGGAGCCACAC-GACCTGTGTGGTCTCCGCGCC-TCCGCGGTGCAGG-CCAGC-TGTCTTCTGA---CTCAGCTCCAGCCACAGAGCCC--------GGCTG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183613300 150 + 184069350 tgggagggacctaaacattcagtccaGGGCGGATATTATGTCCCGGAATCCTGGAACTGCGATGGAGACGCAG-GACCTGTGTGGTCTCCGCGCC-TCTGCGGTGCAGGCCCAGA-CGTCTTCTGA---CTCAGCTCCAGCCACAGAGTCC--------GGCTG
i rheMac3.chr5             C 0 I 130
s macFas5.chr5             188996720 150 + 189454096 tgggagggacctaaacattcagtccaGGGCGGATATTATGTCCCGGAATCCTGGAACTGCGATGGAGACGCAG-GACCTGTGTGGTCTCCGCGCC-TCTGCGGTGCAGGCCCAGA-CGTCTTCTGA---CTCAGCTCCAGCCACAGAGTCC--------GGCTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178420043 147 + 178775436 TGGGAGGGACCTAAACATTCAGTCCAGGGCGGATATTATGTCCCAGAATCCTGGAACTGCGATGGAGACGCAG-GACCTGTGTGGT---CGCGCC-TCTGCGGTGCAGGCCCAGA-CGTCTTCTGA---CTCAGCTGCAGCCACAGAGTCC--------GGCTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135359751 150 + 135778131 tgggaggaacctaaacattcagtccaGGGCGGATATTATGTCCCAGAACCCTGGAACTGCGATGGAGACACAG-GACCTGTGTGGTCTCCGCGCC-TCTGCGGTGCAGGCCCAGA-CGTCTTCTGA---CTCAGCTCCAGCCACAGAGTCC--------GGCTG
i chlSab2.chr7             C 0 I 73
s calJac3.chr3             190478050 156 - 190850796 tgggaggggcctaaacatgcagtccaG-GCAGATATTATGTCCCAGATTCCTGTAGCCGCGATGGAG-CACAG-GGTCTGTGGAGTCTCCACACC-TCCGTGGAGCAGGCCTGGA-CGGCTCCCGA---CTCAGCTCCAGCCGCAGAGCCCTCTCTGCTGGCTG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17908356 154 -  59632846 TGGAACACATGTGACCATGTTTTACGCAACTGATATTTTGTCCCGGAATCCTGTAGATGCTACTGAACCATGT-AGCCAGTCTGTTTTTCTCTCCTTCCATGGAACAAGCTCAAATCATTCTCTGAAACTACAGCTCTCGGCACACAGCCT---------GCTG
i canFam3.chr16            I 1219 C 0
e mm10.chr8                 87610414 2964 - 129401213 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=4012.000000
s hg38.chr4_KI270925v1_alt    235053 6 +    555799 CTCTCA
s ponAbe2.chr4_random        3892828 6 -  23176937 CTCTCA
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113795285 6 + 115148730 CGCTCG
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188996870 6 + 189454096 tgttca
i macFas5.chr5             C 0 I 124
s papAnu2.chr5             178420190 6 + 178775436 TATTCA
i papAnu2.chr5             C 0 I 124
s calJac3.chr3             190478206 6 - 190850796 CTCTCA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17908510 6 -  59632846 TGTTTG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87610414 2964 - 129401213 I
e chlSab2.chr7             135359901 73 + 135778131 I
e rheMac3.chr5             183613450 130 + 184069350 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=1923.000000
s hg38.chr4_KI270925v1_alt    235059 11 +    555799 CAAACAGCCCT---------------
s ponAbe2.chr4_random        3892834 11 -  23176937 CAAATGGCCCT---------------
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113795291 11 + 115148730 CAAACGGCCCT---------------
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190478212 11 - 190850796 CCAACCGCCCT---------------
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17908516 22 -  59632846 ----TAGCTCTCTGTGCATTGGCTTC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87610414 2964 - 129401213 I
e chlSab2.chr7             135359901 73 + 135778131 I
e papAnu2.chr5             178420196 124 + 178775436 I
e macFas5.chr5             188996876 124 + 189454096 I
e rheMac3.chr5             183613450 130 + 184069350 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=218472.000000
s hg38.chr4_KI270925v1_alt    235070 123 +    555799 GCTGTCTGCGACCG-TAAAAGCACAGCCTCCAAC----TGGGGAGAGTGCGAGGGACGTTTT--------------------CACAGGTACACCGTTTTAGTCATAATTTATTATGCTTTTGATTATGAAGATATTT-GAA-TGGCTCAA
s ponAbe2.chr4_random        3892845 123 -  23176937 GCTGTCTGCGGCGG-TAAAAGCACAGCCTCCAAT----GGGGGAGAGTGCGAAGGACGTTTT--------------------CACAGGTACACCGTTTTAGTCATAATTTATTATGCTTTTGATTATGAAGATATTT-GAA-TGGCTTAA
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113795302 123 + 115148730 GCTGTCTGCGACGG-TAAAAGCAGAGCTTCCAAC----CGGGGACAGTGCGAAGGACATTTT--------------------CACAGGCACACCGTTTTAGTCGTAGTTTATTATGCCTTTGATTATGAAGATATTT-GAA-TGGCTTAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183613580 122 + 184069350 GCTGTCTGTGACGG-TAAAAGCAGAGCCTCCAAC-----GGGGAGAGTGCCAAGGACGTTTT--------------------CGCAGGCACACCGTTTTAGTCGTAATTTATTATGCTTTTGATTATGAAGATATCT-GAA-TGGCTTAA
i rheMac3.chr5             I 130 C 0
s macFas5.chr5             188997000 122 + 189454096 GCTGTCTGTGACGG-TAAAAGCAGAGCCTCCAAC-----GGGGAGAGTGCCAAGGACGTTTT--------------------CGCAGGCACACCGTTTTAGTCGTAATTTATTATGCTTTTGATTATGAAGATATCT-GAA-TGGCTTAA
i macFas5.chr5             I 124 C 0
s papAnu2.chr5             178420320 122 + 178775436 GCTGTCTGTGACGG-TAAAAGCAGAGCCTCCAAC-----GGGGAGAGTGCAAAGGACGTTTT--------------------CGCAGGCACACCGTTTTAGTCGTAATTTATTATGCTTTTGATTATGAAGATATTT-GAA-TGGCTTAA
i papAnu2.chr5             I 124 C 0
s calJac3.chr3             190478223 122 - 190850796 GCTGTCTGCGATGG-TAAAAGCAGAGTCTCCAAC----AGGGGAGAGTGCGAAGAACATTTT--------------------CACAGT--CACTGTTTTAGCCTTAATTTATTATGCTTTTGATTATGAAGATGTTTGGAA-TGGCTTAA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17908538 141 -  59632846 ATCTTGTGTGATGGTTAAAAGCAGACCCTTCTAAGGAAGGGTTAAAATGCCAAGATCTTTTTTGGTCATAAGAAATTAAGACCAAAGGCACAC---TTTGGTCTTAATTTCTTATGCTTTTGATTAT-----TATTC-AAAGTTGCTTAC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87610414 2964 - 129401213 I
e chlSab2.chr7             135359901  73 + 135778131 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=1776184.000000
s hg38.chr4_KI270925v1_alt    235193 779 +    555799  
s ponAbe2.chr4_random        3892968 815 -  23176937  
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113795425 812 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183613702 809 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188997122 810 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178420442 813 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135359974 813 + 135778131  
i chlSab2.chr7             I 73 C 0
s calJac3.chr3             190478345 843 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17908679 499 -  59632846  
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87610414 2964 - 129401213 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=252044.000000
s hg38.chr4_KI270925v1_alt    235972 127 +    555799 ttgcccaggctggtctgcaattcctggcctcaagtgatcctcctgccttggcttcccaacatgctggaattacaggcgtgacccactgcatccagcATCACCTCGCTTCTCTATGTTAACCTGTGGC
s ponAbe2.chr4_random        3893783 120 -  23176937 ttgctcaggctggtctgcaattcctggcctcaagtgatcctcctgccttggcttcccaacatgctggaattacaggcatgacccgct-------gcATCAACTCGCTTCTCTGTGTTAACCTGTGGC
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113796237 127 + 115148730 ttgcccaggctggtctgcagttcctggcctcaaatgattctcctgccttcgcttcccaacatgctggaattacaggggcgacccgctgcatccggcATCACCTCGCTTCTCTATGTTAACCTGTGGC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183614511 126 + 184069350 ttgcccaggctggtgtgaaattcctggcctcaagtaattctcctgccttggcttccctacatgctggaatgacaggcctgacctgctgcatccagcATCA-CTCGCTCCTCTATGCTAACCTGTGAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188997932 126 + 189454096 ttgcccaggctggtgtgaaattcctggcctcaagtaattctcctgccttggcttccctacatgctggaatgacaggcctgacccgctgcatccagcATCA-CTCGCTCCTCTATGCTAACCTGTGAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178421255 123 + 178775436 ttgctcaggctggtgtgaaattcctggcctcaagtaattctcctgccttggcttccctacATGCTGGAATGACAGGCCTGACCCGCTGCATCCAGCATCA-CTCG---CTCTATGCTAACCTCTGAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135360787 127 + 135778131 ttgcccaggctggtgtgaaattcctggcctcaagtaattctcctgccttggcttccctacatgctggaatgacaggcgtgacccgctgcatccagcATCACCTCGCTCCTCTATGCTAACCTGTGGC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190479188 117 - 190850796 ttgcccaggctgatctgcaattcccggcctcaagggatcctcctgccttggcctcctgacgtgctggaattacgggcctggactactgcatccagcATCACCTCCCTTTTCTGTCTT----------
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87610414 2964 - 129401213 I
e canFam3.chr16             17909178   0 -  59632846 C
e panTro4.chr4             192915934 35667 + 193495092 M

a score=1372294.000000
s hg38.chr4_KI270925v1_alt    236099 619 +    555799  
s ponAbe2.chr4_random        3893903 621 -  23176937  
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113796364 621 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183614637 619 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188998058 619 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178421378 618 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135360914 606 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190479305 579 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17909178 760 -  59632846  
i canFam3.chr16            C 0 I 123
e mm10.chr8                 87610414 2964 - 129401213 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=1547218.000000
s hg38.chr4_KI270925v1_alt    236718 785 +    555799  
s ponAbe2.chr4_random        3894524 785 -  23176937  
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113796985 783 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183615256 766 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188998677 769 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178421996 785 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135361520 775 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190479884 735 - 190850796  
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87610414 2964 - 129401213 I
e canFam3.chr16             17909938 123 -  59632846 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=189268.000000
s hg38.chr4_KI270925v1_alt    237503 81 +    555799 GTATAATTGGATTATTCTAGAGGTGACTAAAATTACTATTTGGAAATGTTAATTAAGCAACACATGTGACAAATATATACC
s ponAbe2.chr4_random        3895309 75 -  23176937 GTATAATTAGATTATTCTAGA-GTGACTAAA--TACTATTTGGAAATG-TAATTAAGC-ACACATGTGAC-AATATATACC
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113797768 81 + 115148730 GTATAACTAGATTATTGTGGAGGTGACTAAAATTACTATTTGGAAATGTTAATTAAGCAACACATATAACAAACATATACT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183616022 80 + 184069350 GTATAATTAGATTATTCTAGAGGTGACTAAAAATGCTATTTGGAAATG-TCAATAAGCAACACATGTGACAAATATACACC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188999446 80 + 189454096 GTATAATTAGATTATTCTAGAGGTGACTAAAAATGCTATTTGGAAATG-TCAATAAGCAACACATGTGACAAATATACACC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178422781 80 + 178775436 gtaTAATTAGATTATTCTAGAGGTGACTAAAAATGCTATTTGGAAATG-TCAATAAGCAACACATGTGACAAATATACACC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135362295 80 + 135778131 GTATAATTAGATTATTCTAGAGGTGACTAAAAATGCTATTTGGAAATG-TCAATAAGCAACACATGTGACAAATATACACC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190480619 80 - 190850796 ATATAATTAGGGTTTCCTAGAGGAGACTAAAAATGCTATTTGGAAACGTCTGTTAAGCAACATAT-TGACAAATACGTACC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17910061 81 -  59632846 GTATAATTAGATTCTTCTGGAGGTAACTAAAAATACCATTTGGAAACCTCAATTAAGCAACACACATGACAAATATATGCT
i canFam3.chr16            I 123 C 0
e mm10.chr8                 87610414 2964 - 129401213 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=14419.000000
s hg38.chr4_KI270925v1_alt    237584 14 +    555799 AAGATTTCTGTGAA
s ponAbe2.chr4_random        3895384 13 -  23176937 -AGACTTCTGTGAA
i ponAbe2.chr4_random      C 0 I 47849
s nomLeu3.chr7b            113797849 14 + 115148730 AAGACTTCTGTGAA
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178422861 14 + 178775436 AAGACTTCTGTGAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135362375 14 + 135778131 AAGACTTCTGTGAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190480699 14 - 190850796 CAGACTTCAGTTAC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17910142 14 -  59632846 AAATGTCTTGTTTA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87610414 2964 - 129401213 I
e macFas5.chr5             188999526  0 + 189454096 C
e rheMac3.chr5             183616102  0 + 184069350 C
e panTro4.chr4             192915934 35667 + 193495092 M

a score=143031.000000
s hg38.chr4_KI270925v1_alt    237598 118 +    555799 ATTCAGCCCTCCGTGGCTGAGGTCCGCAATACACAGCCG-TCTCTAAGCACCTGGCTTGAGAGTTCCCGCAAAGCAGTAGCCTTGGCTTTGGCCTCTGTGTACCCTATCGCCCTGCACA
s ponAbe2.chr4_random        3943246 118 -  23176937 ATTCAGCCCTCCGTGGCTGAGGTCCGCAATACACAGCCG-TTTGTAAGTACctggcttgagagttcccgcaaggcagcagccttggctttggccgctgtgtaccctatcaccctgcaca
i ponAbe2.chr4_random      I 47849 C 0
s nomLeu3.chr7b            113797863 117 + 115148730 ATTCAG-CCTCCGTGGCTGAGATCCGCAATACACAGCCG-TCTCTGAGTACctggcttgagagttccctcaaggcagtagccttggctttggcccctgagtaccccaacaccctgcaca
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178422875 118 + 178775436 ATTCAGCCCTCCGTGGTTGAGGTCCGCAATACACAGCCA-TCTCTGAGTACCTGGCTTGAGAGTTCTCACAAGGCAGTAGCCTTGGCTTTGGCCTTTGTGTATCTCATCACCCTGCACA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135362389 117 + 135778131 ATTCAG-CCTCCATGGCTGAGGTCCACAATACACAGCCG-TCTCTGAGTACCTGGCTTGAGAGTTCTCGCAAGGCAGTAGCCTTGGCTTTGGACTTTGTGTATCTCATCACCCTGCACA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190480713 113 - 190850796 ATTCGGCACTCAGGGGCTGTG-TCTGCAGCACACGGTCA-TCTCTGAGTAACTGGCTTGAGAGTTCCCACAAGGGAACCG----GCCTCTGGGCTCTGTGTACTCCGTCACCCTGCACG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17910156 117 -  59632846 ATTCATCATTCTATTATTGAGGTCGATGAAATACAGTTGTTCTCTGAGTACctagcctgggagtttctaaaaggcaggaa-cttgtccttcatctctgtatactctatcagcctg-aca
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87610414 2964 - 129401213 I
e macFas5.chr5             188999526   0 + 189454096 C
e rheMac3.chr5             183616102   0 + 184069350 C
e panTro4.chr4             192915934 35667 + 193495092 M

a score=250091.000000
s hg38.chr4_KI270925v1_alt    237716 114 +    555799 GTTTCTGATACGTTGAAGGCTTCCAGTAAAGGAAACACTAACACTTAATAGTATGGATGAGGAATCCAGAGTTCTTTGTTTATTTAC---AGTTTTAAATAATGAAGTCCAC-AAAAA--
s ponAbe2.chr4_random        3943364 115 -  23176937 gtttctgatatgttgaaggcttccagtaaaGGAAACACTAACACTTAATAGTATGTATGAGGAATCCAGAGTGGTTTGTTTATTTAC---AGTTTTAAACAATGAAGTCCACAAAAAA--
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113797980 110 + 115148730 gttcctgatacgttgaaggcttccagtaaaGGAAATACTAACACTTAATAGTATGTATGAGGAATCCAGAGTTC----TTTATTTAC---AGTTTTATACAATGAAGTCCAC-AAAAA--
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183616102 117 + 184069350 GTTCCTGATACGTTGAAGGCTTCCAATAAAGGAAACACTAACACTTAATAGTATGTATGAGGAATGCAGAGTTCTTTGTTTATTTACAGTAGTTTTAAACAGTAAAGTTCAC-GAAAA--
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188999526 117 + 189454096 GTTCCTGATACGTTGAAGGCTTCCAATAAAGGAAACACTAACACTTAATAGTATGTATGAGGAATCCAGAGTTCTTTGTTTATTTACAGTAGTTTTAAACAGTAAAGTCCAC-AAAAA--
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178422993 117 + 178775436 GTTCCTGATACGTTGAAGGCTTCCAATAAAGGAAACACTAACACTTAATAGTATGTATGAGGAATCCAGAGTTCTTTGTTTATTTACAGTAGTTTTAAACAGTAAAGTCCAC-GAAAA--
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135362506 117 + 135778131 GTTCCTGATACGTTGAAGGCTTCCAATAAAGGAAACACTAACACTTAATAGTATGTATGAGGAATCCAGAGTTCTTTGTTTATTTACAGTAGTTTTAAACAGTGAAGTCCAC-GAAAA--
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190480826  95 - 190850796 GTTCCTGCTACCTCGAAGGCTTCCAGTAAAGGAAACATT-ACACCGAATGGTAACTATGAGGAATCCAAAGCTCTTTGTTTATTTACAGTGGTTTT------------------------
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17910273 110 -  59632846 gtttggggtacat---aggttttcaatagatgAAACATGAATACCTCATATTTTGTATTATGACTCCAAAGCTCTCAGTTTACTT-----AGTTTTAAACATCGAAGT-CAC-AAACAAT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87610414 2964 - 129401213 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=150657.000000
s hg38.chr4_KI270925v1_alt    237830 70 +    555799 CTAAAAGAGTAAGAGGCTGC--CTGTTTATTAAAAGCAGCATTCTATTAGGAAAGCATGTATGTACTG--------CTGC
s ponAbe2.chr4_random        3943479 70 -  23176937 CTAAAAGAATAAGAGGTTGC--CTGTTTATTAAAAGCAGCATTCTATTAGGAAAGCATGTATGTACTG--------CTGC
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113798090 69 + 115148730 CTAAAAGAATGAGAGGTTG---CTGTTTATTAAAAGCAGCATTCTATTAGGAAAGCATGTATGTACTG--------CTGC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183616219 70 + 184069350 CTAAAAGAATAAGAGGTTGT--CTGTTTATTAAAAGCAGCATTCTATTAGGAAAGCATGTGTGTACTGGTAC--------
i rheMac3.chr5             C 0 I 34
s macFas5.chr5             188999643 66 + 189454096 CTAAAAGAATAAGAGGTTGT--CTGTTTATTAAAAGCAGCATTCTATTAGGAAAGCATGTGTGTACTG------------
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178423110 66 + 178775436 CTAAAAGAATAAGAGGTTGT--CTGTTTATTAAAAGCAGCATTCTATTAGGAAAGCATGTGTGTACTG------------
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135362623 70 + 135778131 GTAAAAGAATAAGAGGTTGT--CTGTTTATTAGAAGCAGCATTCTATTAGGAAAGCATGTGTGTACTG----CTGC----
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190480921 66 - 190850796 ---AAAGAGTGAGAGGTCGC--CTGCTTTTTAAAAGCAGCATGGTATCGGGAAAGCATGTATGTCCTG--------CTG-
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87613378 68 - 129401213 CCAAAAGTATAAAAAGTTGC--CTGTT--TTCACAGCAATATCTTCTCAGGTAAGCTCTCTTGTATTG--------CAGC
i mm10.chr8                I 2964 C 0
s canFam3.chr16             17910383 54 -  59632846 CCAAAAGAATAAAAGGTTACTTCTTTTTTCTGAAAGAAATGT------GGAAAAGCATCC--------------------
i canFam3.chr16            C 0 C 0
e panTro4.chr4             192915934 35667 + 193495092 M

a score=-2325.000000
s hg38.chr4_KI270925v1_alt    237900 26 +    555799 TGGTGCCTTTGCAGACTT-----------------------------------tgagtgtg
s ponAbe2.chr4_random        3943549 39 -  23176937 TGGTGCCTTTGCCGACTTTCgtgtgt----------------------gtgtgtgtgtgtg
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113798159 38 + 115148730 AGGTGCCCTTGCCGACCT-CCTTACt----------------------gtgtgtgtgtgtg
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             188999709 30 + 189454096 --GTACCCTTGCTGACTT-TCTTACt----------------------gtgtgtg------
i macFas5.chr5             C 0 I 8
s papAnu2.chr5             178423176 30 + 178775436 --ATACCCTTGCTGACTT-TCttact----------------------gtgtgtg------
i papAnu2.chr5             C 0 I 4
s chlSab2.chr7             135362693 24 + 135778131 ------TGGTGCT--CTT-TCTTACt----------------------gtgtgtg------
i chlSab2.chr7             C 0 I 12
s calJac3.chr3             190480987 58 - 190850796 --GTGCCCTTGCCGACAT-TCTTACTTCgtgcatgtgtgcgtgtgtgcgtgtgtgcgtgtg
i calJac3.chr3             C 0 I 4
s mm10.chr8                 87613446 17 - 129401213 -------------GGTTG-TCTTATC----------------------CTGTG--------
i mm10.chr8                C 0 C 0
s canFam3.chr16             17910437 26 -  59632846 TGGTACTCTTGCAGGTTC-TCATCTT----------------------G------------
i canFam3.chr16            C 0 C 0
e rheMac3.chr5             183616289 34 + 184069350 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=156918.000000
s hg38.chr4_KI270925v1_alt    237926 92 +    555799 tgtgtgcgtgtgtgtgtCAAACTGTGGGAGTCAACTGCAGCACAGAAATCACCACCCAGAGGGGGCTTCTCCAAGTGCGCAAGCTCAGCAGA-
s ponAbe2.chr4_random        3943588 92 -  23176937 tgtgtgtgtgtgtgtgtTCAACTGTGGGAGTCAACTGCAGCACAGAAATCACCACCCAGAGGGGGCTTCTCCAAGTGCGCGAGCTCAGCAGA-
i ponAbe2.chr4_random      C 0 I 660
s nomLeu3.chr7b            113798197 89 + 115148730 tgtgtgcatgtgtgtgtTAAACAGTGGGAGTCAATT---GCACAGAAATCACCACCCAGAGGGGGCTTCTCCAAGTGCGCAAGCACAGTAGA-
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183616323 78 + 184069350 tgtgtgtgtgtgtCTCTTAAAAAGTGGGAGTCAGTTGCATCACAGAAATCA--------------CTTCCCCAAGTGCATGAGCTCAGCAGA-
i rheMac3.chr5             I 34 C 0
s macFas5.chr5             188999747 78 + 189454096 tgtgtgtgtgtgtCTCTTAAAAAGTGGGAGTCAGTTGCATCACAGAAATCA--------------CTTCCCCAAGTGCATGAGCGCAGCAGA-
i macFas5.chr5             I 8 C 0
s papAnu2.chr5             178423210 78 + 178775436 tgtgtgtgtgtgtctcttaaAAAGTGGGAGTCAGTTGCATCACAGAAATCA--------------CTTCCCCAAGTGCATGAGCTCAGCAGA-
i papAnu2.chr5             I 4 C 0
s chlSab2.chr7             135362729 65 + 135778131 tgtgtgtgtgtgtCTCTTAAAAAGTGGGAGTCAGTTGCAGCACAG---------------------------AAGTGCATTAGCTCAGCAGA-
i chlSab2.chr7             I 12 C 0
s calJac3.chr3             190481049 92 - 190850796 tgtgtgtgtgtgtgtgtgAAGCAGTGGGGGTCAGTTGCAGCCCAGAAATCACCCCCTGGAGGGGGCTTTTCCAAGTGCACAGGCTTAGCAGA-
i calJac3.chr3             I 4 C 0
s mm10.chr8                 87613463 70 - 129401213 ----------TGTATGTTGGA--GTGAGA-TCAGTCGTGG---AGAAACCA---CCCAAAGGGGACGTCTCAAAGTGCGCATGCTCAGA----
i mm10.chr8                C 0 C 0
s canFam3.chr16             17910463 85 -  59632846 ----TGTGGGTGTGTTTTGGG-GGTGGAAACTAGCTGAAGCAAAGAAATCA---CCCAAAAGGGGCTTCTCAAAGTGCATGTACTAAGTAAGA
i canFam3.chr16            C 0 C 0
e panTro4.chr4             192915934 35667 + 193495092 M

a score=64255.000000
s hg38.chr4_KI270925v1_alt    238018 27 +    555799 GGAAGCCTCAG---CCCTGCGGAAG--CTCAG
s ponAbe2.chr4_random        3944340 27 -  23176937 GGAGGCCTCAG---CCCTGCGGAAG--CTCAG
i ponAbe2.chr4_random      I 660 C 0
s nomLeu3.chr7b            113798286 27 + 115148730 GGAAGCCACAA---CCCTGCGGAAG--CTCAG
i nomLeu3.chr7b            C 0 I 1628
s rheMac3.chr5             183616401 27 + 184069350 GGAAGCCTCAG---CCCTGCAGAAG--CTCAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188999825 27 + 189454096 GGAAGCCTCAG---CCCTGCAGAAG--CTCAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178423288 27 + 178775436 GGAAGCCTCAG---CCCTGCAGAAG--CTCAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135362794 27 + 135778131 GGAAGCCTCAG---CCCTGCAGAAG--CTCAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190481141 27 - 190850796 GGGAGCCTCAG---CCCCACAGAAG--CAGAG
i calJac3.chr3             C 0 I 6
s mm10.chr8                 87613533 25 - 129401213 GCCAGCCCGAG---CTTTGAGTA----CTCTG
i mm10.chr8                C 0 I 6
s canFam3.chr16             17910548 32 -  59632846 CCTGGTCTCAGTCTCCCTGTACAAGACCTCAG
i canFam3.chr16            C 0 C 0
e panTro4.chr4             192915934 35667 + 193495092 M

a score=440171.000000
s hg38.chr4_KI270925v1_alt    238045 178 +    555799 GGAGGGTGAGGATGGAGGCTGGGAGATATTT----------------CCTCACAGCTCCTCTTGTGCCTTCTCTCTCT---TCCCTCCCTACTTGACCC--TGCCCAC-TCCTTCAGTCCCTCATTGTAACCCACTGTCTTTTCAAAGGTACATCATTCTT---ACATTTGGATTTTAAAATGTGTGACGAAAGCTAGAATGC
s ponAbe2.chr4_random        3944367 178 -  23176937 GGAGGGTGAGGGTGGAGGCCAGGAGATATTT----------------CCTCAAAGCTCCCGTTGTGCCTTCTCCCTCT---CCACTCCCTACTTGACTC--TGCCCAC-TCCTTCAGTCCCTCATTGTAACCCACTGTCTTTTCAAAGGTACATCATTCTT---ACATTTGGATTTTAAAACGTGTGACGGAAGCTAGAATGC
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113799941 178 + 115148730 GGAGGGTGAGGTTGGAGGCTAGGAGATATTT----------------ACTCAAAGCTCCCCTTTTGCCTTCTTTGTCT---CCCCTCTCTACTTGACCC--TGGCCAC-TCCTTCAGTCCCTCAGTGTAACCCACTGTCTTTTCAAAGGTACATCATTCTT---ACATTTGGATTTTAAAATGTGTGACGAAAGCTAGAATGC
i nomLeu3.chr7b            I 1628 C 0
s rheMac3.chr5             183616428 178 + 184069350 GGAGGATATGGGTGGAGGCTGGGAGATATTT----------------TCTCAGAGCTCCCCTTGTACCTTCTCCCTCT---CCCCTCCCTGCCTCACCC--TGCCCGC-TCCTTCAGTCCCTAAGTGTAACCCACTGTCTTTTCAAAGGTACGTCGTTCTT---ACATTTGGATTTTAAAATGTGTGAAAAAAGTTAGGATGC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             188999852 178 + 189454096 GGAGGATACGGGTGGAGGCTGGGAGATATTT----------------TCTCAGAGCTCCCCTTATAccttctccctct---cccctccctgcctcaccc--tgcccgc-tccttcagtccctAAGTGTAACCCACTGTCTTTTCAAAGGTACGTCGTTCTT---ACATTTGGATTTTAAAATGTGTGAAAAAAGTTAGGATGC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178423315 178 + 178775436 GGAGGATACGAGTGGAGGCTGGGAGATATTT----------------TCTCAGAGCTCCCCTTgtaccttctctctct---cccctccctgcctgaCCC--TGCCCGC-TCCTTCAGTCCCTCAGTGTAACCCACTGTCTTTTCAAAGGTACGTCGTTCTt---acatttggattttaaaatgtgtgaaaaaaGTTAGGATGC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135362821 178 + 135778131 GGAGGATAAGGGTGGAGGCTGCAAGATATTT----------------CCTCAGAGCTCCCCTTGTACCTTctccctct---cccctccctgcctgaccc--tgcccgc-tccttcagtccctcAGTGTAACCCACTGTCTTTTCAAAGGTACGTCGTTCTT---ACATTTGGATTTTAAAATGTGTGAAAAAAGTTAGGATGC
i chlSab2.chr7             C 0 I 105
s calJac3.chr3             190481174 175 - 190850796 GGGGGGTGAGGGCGGAGGCTGGGAGACATTT----------------CCTCA-AGCTCCCCTTGCACC--CTCCCTCT---CCCCTCCCTACTTTACCC--TGTCCAC-TCCTTCCGTCCCTCCACGTAATCCACTGCCTTTTCAAAGGTATGTCATTCTT---ACATGTGGATTTCAAAATGTGTAACGAAAGCTCGGATGC
i calJac3.chr3             I 6 C 0
s mm10.chr8                 87613564 175 - 129401213 ATAGGGTTGGAAGGGAGACTCAGATGAAGGT---------------------AAACCATCTTTGTGGCTTTACTCTCT---CCTCCCAGGTCTTTATTCTGTGCTCGT-CGCTGTCATATCTCAATGCTGTCCTTTGTCTGTTCTAAAGTACATAGCCCTC---ACAAATGTTATGTAAAACATGTAGCAAAAGCCTGGGTGC
i mm10.chr8                I 6 C 0
s canFam3.chr16             17910580 200 -  59632846 GTAGGGTGAGGACTGTGGCTCAGGAATAGTTAACTAACGGATATTATTTTAAAAGTTCCCCTTATAACTTCATTCTGTCTACTACTTCCTTCTTTAATT--TGCCTTTGTCCCTCTATTCCCGTATGT-ACCCACTGACCATTCTAAAATACATAATCCTTACAACATTTGGATTTTAAAATGTTTGAGGAAGACCGGGATGT
i canFam3.chr16            C 0 C 0
e panTro4.chr4             192915934 35667 + 193495092 M

a score=685432.000000
s hg38.chr4_KI270925v1_alt    238223 235 +    555799 AACCCAGGAGCAGGAGCTCTGCACTAACAGGAGAGGGCTCCTTCTGGTTTCCATGTTCCACACA------CCTTTTTCATTAGGCCAAAAGTCACCAAGGGTGCAATGG-G-AGCTGGACTATGC-TGTCCCCTTTGA----CAAC------ATGATTTCACAGAGTGCTTCCTGCGCCGATGCAGAGAACTGTCGCCAGATTCGTGAGCAATAATGGTATGAACAGCCATTAATTAGAGAGGGAGATTAGCTT
s ponAbe2.chr4_random        3944545 235 -  23176937 AACCCAGGAGCAGGAGCTCTGCACTAACAGGAGAGGGCTCCTTCTGGTTTCCATGGTCCACACA------CCCTTTTCATTAGGCCAGAAGTCACCAAGGGTGCAATGG-G-AGCTGGACTATGC-TGTCCCCTTTGA----CAAC------ATGATTTCACAGAGTGCTTCCTGCGCCGATGCAGAGAACTGTCGCCAGATGCGTGAGCAATGATGGTATGAACAGCCATTAATTAGAGAGGGAGATTAGCTT
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113800119 234 + 115148730 AACCCCGGAGCAGGGGCTCTGCACTAACAGGAGAGGGCTTCTTCTGGTCTCCATGTTCCAGACA------CCCTTTTCATTAGGCCAAAAGCCACCAAGGGTGCAATCG-G-AGCTGGACTATGC-TGTCCCCTTTGA----CAAC------ATGATTTCACAGATTGCTGCCTGCCTCGATGCAGAGAACTGTCGCCAGATTCGTGAGCAATAATGGTATGGACAGCTGTTAATTAGAGAGGGAGA-TAGCTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183616606 235 + 184069350 AACCCAGGAGCAGGATCTCGGCACTAACAGGAGAGGGCTCCTTCTGGTTTCCATGTTCCAAACA------CCCTTTTCATTAGGCAAAAAGTCACCGAGGGTGCAATGG-G-AGCTGGACTATGC-TGTCCCCTTCGA----CAGC------ATGATTTAACAGAGTGATTCCTGCACAGATGCAGAGAACTGTCGCCAGATTCGTGAGCAATAATGGTATGAACAGCCATTAATTAGAGAGGGAGATTAGCTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189000030 235 + 189454096 AACCCAGGAGCAGGATCTCGGCACTAACAGGAAAGGGCTCCTTCTGGTTTCCATGTTCCAAACA------CCCTTTTCATTAGGCAAAAAGTCACCAAGGGTGCAATGG-G-AGCTGGACTATGC-TGTCCCCTTCGA----CAGC------ATGATTTAACAGAGTGATTCCTGCACAGATGCAGAGAACTGTCGCCCGATTCGTGAGCAATAATGGTATGAACAGCCATTAATTAGAGAGGGAGATTAGCTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178423493 235 + 178775436 AACCCAGGAGCAGGATCTCGGCACTAACAGGAGAGGGCTCCTTCTGGTTTCCATGTTCCAGACA------CCCTTTTCATTAGGCAAAAAGTCACCGAGGGTGCAATGG-G-AGCTGGACTATGC-TGTCCCCTTCGA----CAGC------ATGATTTAACAGAGTGATTCCTGCACAGATGCAGAGAACTGTCGCCAGATTCGTGAGCAATAATGGTATGAACAGTCATTAATTAGAGAGGGAGATTAGCTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135363104 235 + 135778131 AACCCAGGAGCAGGATCTCCGCACTAACAGGAGAGGGCTCCTTCTGGTTTCCATGTTCCAGACA------CCCTTTTCATTAGGCAAAACGTCACCGAGGGTGCAATGG-G-AGCTGGACTATGC-TGTCCCCTTCGA----CAGC------ATGATTTAACAGAGTGATTCCTGCACAGATGCAGAGAACTGCCGCCAAATTCGTGAGCAATAATGGTATGAACAGCCATTAATTAGAGAGGGAGATTAGCTT
i chlSab2.chr7             I 105 C 0
s calJac3.chr3             190481349 222 - 190850796 AACCCAGGAGTGTGG---CTGCACTAGCAGGAGAGGGCTCCTTCTGGTTTACAGGTTCCAGACA------CCCTTTTCATTAGGCGAAAAGTCAGCAGGAGTGCAGTGG-A-AGTTGACCTACGC-CGTCCTCTTTGAGTTCCAGTG----GATGATTTAACA----------------GATGCAGAGGACTGTCGCCCGATTCGTGAGCAGTAATGGTATAAACAGCCGTTAAATAGAGAGGGAGATTAGCTT
i calJac3.chr3             C 0 I 313
s mm10.chr8                 87613739 245 - 129401213 AGCCCAGAATTAAGAACTACATA-GGACAGGGAAGGGTCTATTCCCTTTTTTGTATTTTGAGCACCCTTTCCCTTTTCATTAGCCAAAAGGTCACCAGGGGAACAATGGAG-AGTTGGACTCGGCTTGTTTCCTTTGA----AAATGAATTGACAGTTTAACAGAGAGCTTCCTGCACAGATGTGATGAA-GGTCTCCTGATTCGTTAGCAATAATGGTATGAGCAGCCATTAATTAGGGA--GAGATTAGTTT
i mm10.chr8                C 0 C 0
s canFam3.chr16             17910780 242 -  59632846 CAACCAGAATTAAGAACTATGCACCAAAGAAAGAAGATTCTATTTGGTCTTTGTATTTCAGACA------CCCTTTTCATTAGGCAAAAAATCACCAAGGGAACAACGG-GAAGCTGGACTATGC-CCTCCTCTTTGATTTTCAAT----TGATGATTTAATAGAGTGCTTCCTGCACAGATGTAGAGCACAGTCTCCTGATTCATTAGCAATAATGGAATGAGCAGCCATTAATTAGAGAGAGAGATTAGCTT
i canFam3.chr16            C 0 C 0
e panTro4.chr4             192915934 35667 + 193495092 M

a score=690074.000000
s hg38.chr4_KI270925v1_alt    238458 226 +    555799 AAACAAAAGGGGATTGAATTTAGACCCACTCATTATCTTTTCCATTGTTAGCTCTATTGAACTCCATTGTGGTCGGGATAAGAACAAGAGAAATGGGGATTGTGTGGAGTATGAATCAATTAACA--------CA-----TATATGCCTGCTGTGTGCACACATTGCCCT-TTAAGAGATAAAGAAAAATGAGACATGATGGTATAGAACACACACACACAGAGGTAAAGACG--------AAAAAGA---------------------
s ponAbe2.chr4_random        3944780 226 -  23176937 AAACAAAAGGAGATTAAATTTAGACCCACTCATTATCTTTTCCATTGTTAGCTCTATTGAACTCTATTGTGGGTGGGATAAGAACAAGAGAAATGGGGATTGTGTGGAATATGAATCAATTAAGA--------CA-----TATATGCCTGCTGTGTGCACGCATTGCCCT-TTAGGAGATAAAGAAAGATGAGACGTGATGGAATAGAACATACACACACAGAAGTAAAGACG--------AAAAAGA---------------------
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113800353 221 + 115148730 AAACAAAAGGGGATTAAATTTCGACGGACTCATTATATTTTCCATTGTTAGCTCTATTGAACTCTATTGTGGGTGGGATAAGAACAAGAGAAATGGGGATTGTGTGGAGTGTGAATCAATTAACA--------CA-----TACATGCCTGCTGTGTGCACGCATTGCCCT-TTAAGAGATAAAG----GTGAGACATGATGGAATAGAACATACACACACAGAGGTAAAGACG---------AAAAGA---------------------
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183616841 220 + 184069350 AAACAAAAGGGGATTAAATTTAGATCTACTCATTATCTTTTTCATTGTTAGCTCTATTGAACTCTGCTGTGGGTGGGATAAGAACAAGAGAAATGGGGATTGTGTGGAATATGAATCAATTAACA--------AA-----TATATGCCTGCTGTGTGCATGCATTGCTCT-TTAAGAGATAAAGAAAGATGAGATATGGTGGAACAAAACAC------ACAGAGATAAAGATG--------AAAAAGA---------------------
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189000265 226 + 189454096 AAACAAAAGGGGATTAAATTTAGATCTACTCATTATCTTTTTCATTGTTAGCTCTATTGAACTCTGCTGTGGGTGGGATAAGAACAAGAGAAATGGGGATTGTGTGGAATATGAATCAATTAACA--------AA-----TATATGCCTGCTGTGTGCATGCATTGCTCT-TTAAGAGATAAAGAAAGATGAGATATGGTGGAACAAAACATACATAAACAGAGGTAAAGATG--------AAAAAGA---------------------
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178423728 226 + 178775436 AAACAAAAGGGGATTAAATTTAGATCTACTCGTTATCTTTTTCATTGTTAGCTCTATTGAACTCTGCTGTGGGTGGGATAAGAACAAGAGAAATGGGGATTGTGTGGAATATGAATCAATTAACA--------AA-----TATATGCCTGCTGTGTGCATGCATTGCCCT-TTAAGAGATAAAGAAAGATGAGATATGGTGGaacaaaacatacatacacagagataaagatg--------aaaaaga---------------------
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135363339 226 + 135778131 AAACAAAAGGGGATTAAATTTAGATCTACTCATTATCTTTTCCACTGTTAGCTCTATTGAACTCTGCTGTGGGTGGGATAAGAACAAGAGAAATGGGGATTGTGTGGAATATGAATCAATTAACA--------AA-----TATATGCCTGCTGTGTGCATGCATTGACCT-TTAAGAGATAAAGAAAGATGAGATATGATGGAACAAAACATGCATACAGAGAGATAAAGATG--------AAAAAGA---------------------
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190481884 226 - 190850796 aaaCAGAAGGGGATGAAGTTTAGACCCACTCCTTATCTTTTGCATTGTTAGCAGAGTTGAACTCTGTTGTGGGTGGGAAAAGAACAAGAGAATTTGGGATTGTGTGCAACATGAATCCGTTAACA--------AA-----TATATGCCTGCTGTGTGCACGTATCACCCT-CTAAGACATAAAGAAAGATGAGACATGATGGAACAGGACATACACACACAGAGATAAAGATG--------AAAAAGA---------------------
i calJac3.chr3             I 313 C 0
s mm10.chr8                 87613984 235 - 129401213 AAACAAAAAGGGATTAAATTTAGATTCACTTATTATCCTTTCCATTGTTAGTACTATTGAACCCTGATGTGTGGGGGATAAGGCCAAGAGAATGAGGGCCTGTGAGGAATATGAATCAATTAACAATGTATTTAT-----TATGTGCCTGCATTGGGCCTGCATTGCTCTATTAAGATAGGAAGAAAGACAAGATAGACTAGAATAGAACATTTACACATGGAAATAAAgaga--------gaggaga---------------------
i mm10.chr8                C 0 I 1948
s canFam3.chr16             17911022 256 -  59632846 AAACAAAAGGGGATTAAATTTAGATTCACTTATTATCCTTTCCATTGTTGATACTATTGAACCCTGTTGTGAGTGGGATAAGGACAAGAGAATTGGTGATTGTGCAGAATATGAATCAATTAACA--------AACACATTATATGCTTGCTCTGTGCAAGTATTGCTGT-TTAAGAAATAAAG----ATAAGACATGATAGAAGAGAACACACACATATAGAGATGAAGACAGAGAGAGAAAAAAGATGACAGACATTGAGAAAGAGA
i canFam3.chr16            C 0 C 0
e panTro4.chr4             192915934 35667 + 193495092 M

a score=435426.000000
s hg38.chr4_KI270925v1_alt    238684 190 +    555799 C--------TCAGATTCCACCTTTTTCTTTCTTCATTATGGAACCTTG---TTTTTTCTCTATACTTAGCTGTAGCCCCTCTCCTCCTCTCAAACATAGAGTTCTACATAGAAACTTTTTC---TTCTGCCGT-------------AAAATCAGTAAGCTCTCTTGGGACAGTTTGCAAAGTATTAGATTTTACTCAATTAGAATTGTTCGCATAGG
s ponAbe2.chr4_random        3945006 196 -  23176937 C--AGAGATTTAGATTCCACCTTTTTCTTTCTTGATTATGGAACCTTG---TTTTTTCTCTATACTTAGCTGTAGCCCCTCTCCTCCTCTCAAACATAGAGTTCTACATAGAAACTTTTTC---TTCTGCCCT-------------AAAATCAGTAAGGTCTCTGGGGACAGTTTGCAAAGTATTAGATTTTACACAATTAGAATTATTCGCATAGG
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113800574 198 + 115148730 CAGAGAGACTCAGATTCCACCTTTTTCTTTCTTGATTATGGAACCTTG---TTTTTTCTGTATACTTAGCTGTAGCCCCTCTCCTCCTCTCAAACATAGGGTTCTATATAGAAACTTTTTC---TTCTGCTCT-------------AAAATCAGTAAGGTCTCTGGGGACAGTTTGCAAAGTATTAGATTTTACCCAATTAGAATTGTTCGCATAGG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183617061 181 + 184069350 T----AGACTCAGATTCCATCTTTTTCTTTCTAGATTATGGAACCTTG---TCTTTTCTCTATAATTAGATGTAGCCCCTCTCATCCTCTCAAAC------------ATAGAAACTTTTTC----TCTGCCCT-------------AAAATCAGTCAGGTCTCTGGGGACAGTTTGCAAAGTATTAGATTTTACCCACTTAGAATTGTTCGCATAGG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189000491 181 + 189454096 T----AGACTCAGATTCCATCTTTTTCTTTCTAGATTATGGAACCTTG---TCTTTTCTCTATAATTAGATGTAGCCCCTCTCATCCTCTCAAAC------------ATAGAAACTTTTTC----TCTGCCCT-------------AAAATCAGTCAGGTCTCTGGGGACAGTTTGCAAAGTATTAGATTTTACCCACTTAGAATTGTTCGCATAGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178423954 181 + 178775436 t----agACTCagattccatctttttctttctagattATGGAACCTTG---TCTTTTCTCTATAATTAGATGTAGCCCCTCTCATCCTCTCAAAC------------ATAAAAACTTTTTC----TCTGCCCT-------------AAAATCAGTCAGGTCTCTGGGGACAGTTTGCAAAGTATTAGTTTTTACCCACTTAGAATTGTTCGCATAGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135363565 181 + 135778131 T----AGACTCAGATTCCATTTTTTTCTTTCTAGATTATGGAACCTTG---TTTTTTCTCCATAATTAGATGTAGCTCCTCTCATCCTCTCAAAC------------ATAGAAACTTTTTC----TCTGCCCT-------------AAAATCAGTCAGGTCTCTGGGGACAGTTTGCAAAGTATTAGATTTTACCCACTTAGAATTGTTCGCATAGG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190482110 185 - 190850796 TGCAGAGACTCAGATTCCACCTTTTTCTTTCTTGATTATGGAACCTTG---TTTTTTCTCTGTA------TGTAGCCCCTC---TCCTCTCAAACATAGAGTTCTACATAGAAAATTT-------TCTGCCCT-------------AAAATCAGCAAGGTCTCGGGGGACAGTTTGCAAAAGATTAGATATTACCCAATTAGAATTGTTTGCAGAGG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17911278 203 -  59632846 --------TCCAGATTCTACTTTTTTCTTCCTTGATTACAGGACTTTATTTTTTTTTCTCTTAACTGAGCTGTAACCCCTCT-----TTCCAAGCGTAGAGTCAGT-GTATAATCTTTTTTCTTTTCTGTTGTTAAAAAAAAAAAAAAAATCAATGAGGTCCCTGGGGACAGTTTTCAAAGTATTACATTTTACCCAATTAAAATTGCTTACAGAGG
i canFam3.chr16            C 0 I 124
e mm10.chr8                 87614219 1948 - 129401213 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=133583.000000
s hg38.chr4_KI270925v1_alt    238874 50 +    555799 GCATGGCAGagtggttctcattccta-tcagaccaaggccctctttaagac
s ponAbe2.chr4_random        3945202 50 -  23176937 GCATGGCAGAGTGATTCTCATTCCTA-TCAGACCAAGGTCCTCTTTAAGAA
i ponAbe2.chr4_random      C 0 I 802
s nomLeu3.chr7b            113800772 50 + 115148730 GCATGGCAGAGTGTTTCTCATTCCTA-TCAAACCAAGGTCTTCTTTAAGAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183617242 50 + 184069350 GCATGGCAGagtggttctcattccca-tcagaccaaggtcctctttaaaaa
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189000672 50 + 189454096 GCATGGCAGagtggttctcattccca-tcagaccaaggtcctctttaaaaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178424135 50 + 178775436 GCATGGCAGAGTGGTTCTCATTCCTA-TCAGACCAAGgtcctctttaaaaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135363746 50 + 135778131 GCATGGCAGagtggctctcattccca-tcagaccaaggtcctctttaaaaa
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190482295 50 - 190850796 GCACGGCAGagtggttctcatttctg-tcagaacaaggtcctccttaggaa
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17911605 51 -  59632846 GCATAGCAAaatggtccccaatcctatttagaacaagccccccttaaaaaa
i canFam3.chr16            I 124 C 0
e mm10.chr8                 87614219 1948 - 129401213 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=1139776.000000
s hg38.chr4_KI270925v1_alt    238924 457 +    555799  
s ponAbe2.chr4_random        3946054 461 -  23176937  
i ponAbe2.chr4_random      I 802 C 0
s nomLeu3.chr7b            113800822 459 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183617292 470 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189000722 470 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178424185 470 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135363796 468 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190482345 473 - 190850796  
i calJac3.chr3             C 0 I 145
s canFam3.chr16             17911656 486 -  59632846  
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87614219 1948 - 129401213 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=224588.000000
s hg38.chr4_KI270925v1_alt    239381  95 +    555799 AATGTTTCTGTATGTTTTGTGACC-------------------------CAGATCCCTCTGGCATCCCAATGACGAGGACTTCAGCATCACTTTCAAATGCAAACTGACTATGCTTACTA
s ponAbe2.chr4_random        3946515  95 -  23176937 AACATTTCTGTATGTTCTGTGACC-------------------------CAGATCCCTCTGGCACCCCAATGACGAGGACTTCAGCATCACTTTCAAATGCAAACTGACTATGCTCACTA
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113801281  95 + 115148730 AACGTTTCTGTATGTTCTGTGACC-------------------------CAGATCTCTCTGGCATACCAACGACGAGGACTTCAGCATCACTTTCAAATGCAAACTGACTATGCTCACTA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183617762 101 + 184069350 AACGTTTCTGTAGGTTCTGTGACCCAG-------------------ATTCAGATCCCTCTGGCTTCCCAATGGCGAGGAGTTCACCATCAGTTTCAAATGCAAACTGGCTATGCTAACTA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189001192 101 + 189454096 AACGTTTCTGTAGGTTCTGTGACCCAG-------------------ATTCAGATCCCTCTGGCTTCCCAATGGCGAGGAGTTCACCATCAGTTTCAAATGCAAACTGGCTATGCTAACTA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178424655 101 + 178775436 AACGTTTCTGTAGGTTCTGTGACCCAG-------------------ATTCAGATCCCTCTGGCATCCCAATGGCGAGGAGTTCACCATCAGTTTCAAATGCAAACTGGCTATGCTAACTA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135364264 101 + 135778131 AACGTTTCTGTAGGTTCTGTGACCCAG-------------------ATTCAGATCCCTCTGGCATCCCAATGGTGACGAGTTCACCATCAGTTTCAAATGCAAACTGGCTATGCTAACTA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3                367829 119 + 190850796 AACATTTCCATAGGTTCTGTCACCCGAGAAATCCTCTGTGAGCCC-ATTCAGATCCCTCTGGCATCCCGGCGACGAGGAGTTCAGCATCACTTTCAAATGCAATCTTACCACACTCACTA
i calJac3.chr3             T 81724 C 0
s canFam3.chr16             17912142 118 -  59632846 aacatttct-tatgttccatgactccagaaatcatctgtgacccagattaagattccttTGGTATCCCAATGACAAAAAGGTCAGCATCACTTTCAAATGCAAATT-ACTAACCTCACTA
i canFam3.chr16            C 0 I 16
e mm10.chr8                 87614219 1948 - 129401213 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=27316.000000
s hg38.chr4_KI270925v1_alt    239476  25 +    555799 CA-CCCTTCCTTCCAT--------------------------------------------------------------------------------------------TG-TCCATCAT
s ponAbe2.chr4_random        3946610  25 -  23176937 CA-CCCTTCCTTCCAT--------------------------------------------------------------------------------------------TG-TCCATCAT
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113801376  24 + 115148730 CA-CCCTT-CTTCCAT--------------------------------------------------------------------------------------------TG-TCCGTCAT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183617863  25 + 184069350 CA-ACCTTCCTTCCAT--------------------------------------------------------------------------------------------TG-TCCATCAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189001293  25 + 189454096 CA-ACCTTCCTTCCAT--------------------------------------------------------------------------------------------TA-TCCATCAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178424756 117 + 178775436 CA-ACCCTCCTTCCATTGTCCATCATTCAAACTGACTATGCTCACCACACCCTTCCTTCCATTGTCCATCACTCAAACTGACTAGGCTCACTACACCCTTCCTTCCAATG-TCCATCAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135364365  25 + 135778131 CA-ACCTTCCTTCCAT--------------------------------------------------------------------------------------------TG-TCCATCAT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3                367948  27 + 190850796 CACCCCCTCCTTCCAT--------------------------------------------------------------------------------------------TGCCCCATCAT
i calJac3.chr3             C 0 T 93246
e mm10.chr8                 87614219 1948 - 129401213 I
e canFam3.chr16             17912260  16 -  59632846 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=700.000000
s hg38.chr4_KI270925v1_alt    239501 1 +    555799 C
s ponAbe2.chr4_random        3946635 1 -  23176937 C
i ponAbe2.chr4_random      C 0 I 226
s nomLeu3.chr7b            113801400 1 + 115148730 T
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183617888 1 + 184069350 T
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189001318 1 + 189454096 T
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178424873 1 + 178775436 T
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135364390 1 + 135778131 T
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87614219 1948 - 129401213 I
e canFam3.chr16             17912260 16 -  59632846 I
e calJac3.chr3                367975 93246 + 190850796 T
e panTro4.chr4             192915934 35667 + 193495092 M

a score=155449.000000
s hg38.chr4_KI270925v1_alt    239502 91 +    555799 CAAACTGACTATGCTCACTACA-CCCTTCCTTCCATTGTCCATCATTCAAACT----ATGCTCACTACACCCCTTCCCTCCATTGT-CCATCATTCA
s ponAbe2.chr4_random        3946862 94 -  23176937 CAAACTGACTATGCTCACTACA-CCCTTCCTTCCATTGTCCATCATTCAAACCGACCATGCTCACTACACCCTTTCC-TCCATTGT-CCATCATTCA
i ponAbe2.chr4_random      I 226 C 0
s nomLeu3.chr7b            113801401 96 + 115148730 CAAACTGACTATGGTCACTACACCCCTTCCCTCCATTGTCCATCGTTCAAACTGACTATGCTCACTACACCCCTTCCTTCCGTTGT-CCATCATTCA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183617889 94 + 184069350 CAAACTGACTATGCTCACCACA-CCCTTCCTTCCATTGTCCATCATTCAAACTGACTATGCTCACTACACC--TTCCCTCGGTTGTCCCATCATTCA
i rheMac3.chr5             C 0 I 92
s macFas5.chr5             189001319 94 + 189454096 CAAACTGACTATGCTCACCACA-CCCTTCCTTCCATTGTCCATCATTCAAACTGACTATGCTCACTACACC--TTCCCTCCGTTGTCCCATCATTCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178424874 93 + 178775436 CAAACTGACTATGCTCACTACA-CCCTTCCTTCCATTGTCCATCATTCAAACTGACTATGCTCACTACACC--TTCCCTCCATTGT-CCATCATTCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135364391 94 + 135778131 CAAACTGACTATGCTCACTACA-CCCTTCCTTCCATTGTCCATCATTCAAACTGACTATGCTCACTACACC--TTCCCTCCATTGTCCCATCATTCA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87614219 1948 - 129401213 I
e canFam3.chr16             17912260 16 -  59632846 I
e calJac3.chr3                367975 93246 + 190850796 T
e panTro4.chr4             192915934 35667 + 193495092 M

a score=41855.000000
s hg38.chr4_KI270925v1_alt    239593 34 +    555799 AACCGACTATGCTCGCTACACCCCTTCCTTCCAT
s ponAbe2.chr4_random        3946956 34 -  23176937 AACCGACTATGCTCACTACACCCCTTCCTTCCAT
i ponAbe2.chr4_random      C 0 I 13
s nomLeu3.chr7b            113801497 23 + 115148730 AACTGACTATGCTCACTACACCC-----------
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183618075 33 + 184069350 AACTGACTATGCTCACTGCACCC-TTCCCTTCAC
i rheMac3.chr5             I 92 T 125
s macFas5.chr5             189001413 33 + 189454096 AACTGACTAGGCTCACTACACCC-TTCCTTCCAA
i macFas5.chr5             C 0 I 13
s papAnu2.chr5             178424967 33 + 178775436 AACTGACTATGCTCACTACACCC-TTCCTTCCAA
i papAnu2.chr5             C 0 I 335
s chlSab2.chr7             135364485 32 + 135778131 AACTGACTATGCTCACTACA-CC-TTCCCTCCAT
i chlSab2.chr7             C 0 I 48
e mm10.chr8                 87614219 1948 - 129401213 I
e canFam3.chr16             17912260 16 -  59632846 I
e calJac3.chr3                367975 93246 + 190850796 T
e panTro4.chr4             192915934 35667 + 193495092 M

a score=40981.000000
s hg38.chr4_KI270925v1_alt    239627 39 +    555799 AACTGACTATGCTCACTACACCCCTTCCCTCCATTGTCC
s ponAbe2.chr4_random        3947003 39 -  23176937 AACTGACTATGCTCACTGCACCCCTTCCTTCCACTGTCC
i ponAbe2.chr4_random      I 13 C 0
s nomLeu3.chr7b            113801520 14 + 115148730 -------------------------TTCTTCCGTTGTCC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183617983 38 + 184069350 AACTGACTAGGCTCACTACA-CCCTTCCTTCCAATGTCG
i rheMac3.chr5             T 125 C 0
s macFas5.chr5             189001459 38 + 189454096 AACTGACTGTGCTCACTACA-CCCTTCCCTCCATTGTCC
i macFas5.chr5             I 13 C 0
s papAnu2.chr5             178425335 39 + 178775436 AACTCACTATGCTCACTACACCCCTTGCCTCCATTGTCC
i papAnu2.chr5             I 335 C 0
s chlSab2.chr7             135364565 37 + 135778131 AACTGACTATGCTCACTACA--CCTTCCCTCCATTGTCC
i chlSab2.chr7             I 48 I 232
e mm10.chr8                 87614219 1948 - 129401213 I
e canFam3.chr16             17912260 16 -  59632846 I
e calJac3.chr3                367975 93246 + 190850796 T
e panTro4.chr4             192915934 35667 + 193495092 M

a score=135765.000000
s hg38.chr4_KI270925v1_alt    239666 80 +    555799 ATCATTCAAACTGACTATGCTCACTACACCCTTCCTATCATTGTCCATCATTCAAACTGACTATGCTCACTACACCCTTC
s ponAbe2.chr4_random        3947042 80 -  23176937 ATCATTCAAACTGACTATGCTCACTACACCCTTCCTATCATTGTCCATCATTCAAACTGACTATGCTCACTACACCCTTC
i ponAbe2.chr4_random      C 0 I 889
s nomLeu3.chr7b            113801534 77 + 115148730 ATCATTCAAACTGACTATGCTTACTACACCCTTCTT-CCATTGTCCATCATTCAAACTGACTA-GCTGACTACACCCTT-
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183618021 80 + 184069350 ATCATTCAAACTGACTATGCTCACTACACCCTTCCCTCCATTGTCCATCATTCAAACTGACTATGCTCACTGCACCCTTC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189001497 80 + 189454096 ATCATTCAAACTGACTATGCTCACTACACCCTTCCTTCCAATGTCCACTATTCAAACTGACTATGCTCACTACACCCTTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178425374 80 + 178775436 ATCATTCAAACTGACTATGCTCACTGCACCCTTCCCTTCACTGTCCATCATTCAAACTGACTATGCTCACTACACCCTTC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135364834 80 + 135778131 ATCATTCAAACTGACTATGCTCACTACACCCTTCCCTCCATTGTCCATCATTCAAACTGACTATACTCACTACACCTTTC
i chlSab2.chr7             I 232 C 0
e mm10.chr8                 87614219 1948 - 129401213 I
e canFam3.chr16             17912260 16 -  59632846 I
e calJac3.chr3                367975 93246 + 190850796 T
e panTro4.chr4             192915934 35667 + 193495092 M

a score=78675.000000
s hg38.chr4_KI270925v1_alt    239746 48 +    555799 CTTCCATTGTCCATCATTCAAACTGACTATGCTCACTACA-CCT--TTCCT
s ponAbe2.chr4_random        3948011 49 -  23176937 CCTCCATTGTCCATCATTCAAACTGACTATGCTCACTACA-CCCC-TTCCT
i ponAbe2.chr4_random      I 889 C 0
s nomLeu3.chr7b            113801611 50 + 115148730 CTTCCACTGTCCATCATTCAAACTGACTATGCTCACTACA-CCCCTTTCCC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183618101 49 + 184069350 CCTTCACTGTCCATCATTCAAACTGACTATGCTCACTACACCCC--TTGCC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189001577 48 + 189454096 CTTCCAATGTCCATCATTCAAACTGACTATGCTCACTACA-CCC--TTCCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178425454 48 + 178775436 CTTCCATTGTCCATCATTCAAACTGACTATGCTCACTACA-CCC--TTCCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135364914 48 + 135778131 CTTCCAATGTCCATCATTCAAACTGACTATGCTCACTACA-CCT--TCCCT
i chlSab2.chr7             C 0 I 232
e mm10.chr8                 87614219 1948 - 129401213 I
e canFam3.chr16             17912260 16 -  59632846 I
e calJac3.chr3                367975 93246 + 190850796 T
e panTro4.chr4             192915934 35667 + 193495092 M

a score=295.000000
s hg38.chr4_KI270925v1_alt    239794 1 +    555799 A
s ponAbe2.chr4_random        3948060 1 -  23176937 T
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113801661 1 + 115148730 T
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183618150 1 + 184069350 T
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189001625 1 + 189454096 T
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178425502 1 + 178775436 T
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87614219 1948 - 129401213 I
e canFam3.chr16             17912260 16 -  59632846 I
e calJac3.chr3                367975 93246 + 190850796 T
e chlSab2.chr7             135364962 232 + 135778131 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=21238.000000
s hg38.chr4_KI270925v1_alt    239795 13 +    555799 TCATTGTCCATCA
s ponAbe2.chr4_random        3948061 13 -  23176937 CCATTGTCTATCA
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113801662 13 + 115148730 CCATTGTGCATCA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183618151 13 + 184069350 CCATTGTCCATCA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189001626 13 + 189454096 CCAATGTCCATCA
i macFas5.chr5             C 0 I 230
s papAnu2.chr5             178425503 13 + 178775436 TCATTGTCCATCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135365194 13 + 135778131 CCATTGTCCATCA
i chlSab2.chr7             I 232 C 0
e mm10.chr8                 87614219 1948 - 129401213 I
e canFam3.chr16             17912260 16 -  59632846 I
e calJac3.chr3                367975 93246 + 190850796 T
e panTro4.chr4             192915934 35667 + 193495092 M

a score=92201.000000
s hg38.chr4_KI270925v1_alt    239808  73 +    555799 TTCAAACTGACTATGCTTACTACACCC-TTCCTTCCAT--------------------TATCTATCATTCCAACTGACTATGCTCACTA-----------------------------------------------CACCC
s ponAbe2.chr4_random        3948074  74 -  23176937 TTCAAACTGACTATGCTCACTACACCCCTTCCTTCCAT--------------------TGTCCATCATTCAAACTGACTATGCTCACTA-----------------------------------------------CACCC
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113801675  69 + 115148730 TTCAA----ACTATGCTCACTACACCC-TTCCTATCAT--------------------TGTCCATCATTCAATCTGACTATGCTCACTA-----------------------------------------------CACCC
i nomLeu3.chr7b            C 0 T 47
s rheMac3.chr5             183618164  92 + 184069350 TTCAAACTGACCATGCTCACTATACCC-TTCCCTCCATTGTCCATCGCTTCCCTTCACTGTCCATCATTCAAACTGACTATGCTCACTG-----------------------------------------------CACC-
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189001869 119 + 189454096 TTCAAACTGACTATGCTCACTACACCC-TTCCCTCCAT--------------------TGTCCATCATTCAAACTGACTATACTCACTACACCCCTTGCCTCCATTGTCCATCATTCAAACTGACTATGCTCACTGCACC-
i macFas5.chr5             I 230 C 0
s papAnu2.chr5             178425516 118 + 178775436 TTCAAACTGACCATGCTCACTACACCC-TTCCTTCCAT--------------------TGTCCATTGTTCAAACTGACTATGCTCACTACA-CCCTTCCTTCCATTGTCCATCATTCAAACTGACTATGCTCACTACACC-
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135365207  72 + 135778131 TTCAAACTGACTATGCTCACTGCACCC-TTCCTTTCAC--------------------TGTCCATCATTCAAACTGACCATGCTCACTA-----------------------------------------------CACC-
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87614219 1948 - 129401213 I
e canFam3.chr16             17912260  16 -  59632846 I
e calJac3.chr3                367975 93246 + 190850796 T
e panTro4.chr4             192915934 35667 + 193495092 M

a score=74180.000000
s hg38.chr4_KI270925v1_alt    239881 42 +    555799 CTTCCTTCCATTGTCCATCATTCAA----ACTATGCTCACTACACC
s ponAbe2.chr4_random        3948148 42 -  23176937 CTTCCTTCCATTGTCCATCATTCAA----ACTATGCTCACTACACC
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113801697 46 + 115148730 CTTCCTATCATTGTCCATCATTCAATCTGACTATGCTCACTACACC
i nomLeu3.chr7b            T 47 I 1
s rheMac3.chr5             183618256 46 + 184069350 CTTCCCTTCACTGTCCATCATTCAAACTGACTATGCTCACTACACC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189001988 46 + 189454096 CTTCCCTTCACTGTCCATCATTCAAACTGACTATGCTCACTACACC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178425634 46 + 178775436 CTTCCTTCCATTGTCCATCGTTCAAACTGACTATGCTCACTACACC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135365279 46 + 135778131 CTTCCTTCCATTGTCCATCGTTCAAACTGACCATGCTCACTACACC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87614219 1948 - 129401213 I
e canFam3.chr16             17912260 16 -  59632846 I
e calJac3.chr3                367975 93246 + 190850796 T
e panTro4.chr4             192915934 35667 + 193495092 M

a score=2865.000000
s hg38.chr4_KI270925v1_alt    239923 2 +    555799 CT
s ponAbe2.chr4_random        3948190 2 -  23176937 CT
i ponAbe2.chr4_random      C 0 C 0
s rheMac3.chr5             183618302 2 + 184069350 CT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189002034 2 + 189454096 CT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178425680 2 + 178775436 CT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135365325 2 + 135778131 CT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87614219 1948 - 129401213 I
e canFam3.chr16             17912260 16 -  59632846 I
e calJac3.chr3                367975 93246 + 190850796 T
e nomLeu3.chr7b            113801743 1 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=109627.000000
s hg38.chr4_KI270925v1_alt    239925  93 +    555799 TTCCTCCATTGTCCCATCATTCA----------------------------------------------ACTAGACATGTATTCAGATATTTAAGGTTATCTATAAAGGTTTAATTTGTTTTTCCTAATGTCTGTCTAC
s ponAbe2.chr4_random        3948192  88 -  23176937 TTCCTCCATTGTCCCATCATTCA----------------------------------------------ACTAGACATGTATTCAGATATTTAAGGTTATCTATAAAGG-----TTTGTTTTGGCTAATGTCTGTCTAC
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113801744  93 + 115148730 TCCTTCCATTGTCCCATCATTCA----------------------------------------------CCTAGACATGTATTCAGATATTTAAGGTTATCTATAAAGGTTTAATTTTTTTCTCCAAATGTCTCTCTAC
i nomLeu3.chr7b            I 1 T 97
s rheMac3.chr5             183618304  85 + 184069350 TCCTTCCATTGT-CCATCATTCA----------------------------------------------ACTCGACACGTAT-------TTTAATATTGTCTTTACAGGTTTAATTTGTTTATCCTAATGTCTCTCTAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189002036  85 + 189454096 TCCTTCCATTGT-CCATCATTCA----------------------------------------------ACTCGACATGTAT-------TTTAATATTGTCTTTACAGGTTTAATTTGTTTATCCTAATGTCTCTCTAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178425682 131 + 178775436 TCCTTCCATTGT-CCATCGTTCAAACTGACCATGCTCACTACACTCTTCCTTCCATTGTCCATCATTCCACTCGACACGTAT-------TTTAATATTGTCTTTACAGGTTTAATTTGTTTATCCTAATGTCTCTCTAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135365327  85 + 135778131 TCCTTCCATTGT-CCATCATTCA----------------------------------------------ACTTGACACATAT-------TTTAATATTGTCTTTACAGGTTTAATTTGTTTATCCTAATGTCTGTCTAC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87614219 1948 - 129401213 I
e canFam3.chr16             17912260  16 -  59632846 I
e calJac3.chr3                367975 93246 + 190850796 T
e panTro4.chr4             192915934 35667 + 193495092 M

a score=17017.000000
s hg38.chr4_KI270925v1_alt    240018 10 +    555799 CCCTTCCCTC
s ponAbe2.chr4_random        3948280 10 -  23176937 CCCTTCCCTC
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113801740 10 + 115148730 ACCCTCCTTC
i nomLeu3.chr7b            T 97 C 0
s rheMac3.chr5             183618389 10 + 184069350 CCCTTCCTTC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189002121 10 + 189454096 CCCTTCCTTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178425813 10 + 178775436 CCCTTCCTTC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135365412 10 + 135778131 CCCTTCCTTC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87614219 1948 - 129401213 I
e canFam3.chr16             17912260 16 -  59632846 I
e calJac3.chr3                367975 93246 + 190850796 T
e panTro4.chr4             192915934 35667 + 193495092 M

a score=14613.000000
s hg38.chr4_KI270925v1_alt    240028 8 +    555799 AATTGTCC
s ponAbe2.chr4_random        3948290 8 -  23176937 AATTGTCC
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113801750 8 + 115148730 CATTGTCC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183618399 8 + 184069350 CATTGTCC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189002131 8 + 189454096 CATTGTCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178425823 8 + 178775436 CATTGTCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135365422 8 + 135778131 CATTGTCC
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17912276 8 -  59632846 AGTCATCT
i canFam3.chr16            I 16 C 0
e mm10.chr8                 87614219 1948 - 129401213 I
e calJac3.chr3                367975 93246 + 190850796 T
e panTro4.chr4             192915934 35667 + 193495092 M

a score=489627.000000
s hg38.chr4_KI270925v1_alt    240036 230 +    555799 CATCATTCAACTCTATACATATTCAGATATTTAAGGTTATCTATAAAGGTTTAATTTGT-TT--CTCCAAATGTCTCTGTACAGGTACAATATTAAGAAATTAGTCATCTAAAGTCCATATTTTTAAAAATCATTATAAATATATAATAATTTTATGAGCACACCAAAGTAcagtaattccttctcatcatggttctctttatgcaaaattcgaatgggtacagatttttgtt
s ponAbe2.chr4_random        3948298 230 -  23176937 CAGCATTCAACTCTATACATATTCAGATATTTAAGGTTATCTATAAAGGTTTAATTTGT-TT--CTCCAAATTTCTCTCTACAGGCACAATATTAAGAAATTAGTCCCCTAAAGTCCatatttttaaaaataattataaatatataataattttatGAGCACACCAAAGTACAGTAATTCCTTCCAATCATGGTTCTCTTTACGCAAAATTCGAATGGACACAGATTTCTGTT
i ponAbe2.chr4_random      C 0 T 49202
s nomLeu3.chr7b            113801758 230 + 115148730 CATCATTCACCTAGACATGTATTCAGATATTTAAGGTTATCTATAAAGGTTTAATTTTT-TT--CTCCAAATGTCTCTCTACAGGCACAATATTAAGAAATTAGTCATCTAAAGTCCATATTTTTAAAAATCTTTATAAATATATAATAATTTCAAGAGTACACCAAAGTACAGTAATTCCTTCTCATCATGGTTCTCTTTATGCAAAATTCGAATGGGTACAGATTTCTGTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183618407 230 + 184069350 CATCATTCAACTTAACACATATTCAGATATTTAAGGCTATCTATAAAGGTTTAATTTGT-TT--CTCCTAATATCTCTCTACAGGCACAATATTAAGAAATTAGTCATCTAAAGCCCATATTTTAAAAAATCATTATAAACATACAATAATTTTATGAGCACACCAAAGTACAGTAATTCCTTCTCATCATGGTTCTCTTTATGCAAAATTTGACTTGGTGCAGCTTTCTGTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189002139 230 + 189454096 CATCATTCAACTTAACACATATTCAGATATTTAAGGCTATCTATAAAGGTTTAATTTGT-TT--CTCCTAATATCTCTCTACAGGCACAATATTAAGAAATTAGTCATCTAAAGCCCGTATTTTAAAAAATCATTATAAACATACAATAATTTTATGAGCACACCAAAGTACAGTAATTCCTTCTCATCATGGTTCTCTTTATGCAAAATTTGACTTGGTGCAGCTTTCTGTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178425831 230 + 178775436 CATCATTCAACTTAACACATATTCAGATATTTAAGGCTATCTATAAAGGTTTAATTTGT-TT--CTCCTAATATCTCTCTACAGGCACAATATTAAGAAATTAGTCATCTAaagcctgtattttaaaaaatcattataaacATACAATAATTTTATGAGCACACCAAAGTACAGTAATTCCTTCTCATCATGGTTCTCTTTATGCAAAATTTGACTTGGTGCAGCTTTCTGTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135365430 230 + 135778131 CATCATTCAACTTAACACATATTCAGATATTTAAGGCTATCTATAAAGGTTTAATTTGT-TT--CTCCTAATATCTCTCTACAGACACAATATTAAGAAATTAGTCATCTAAAGCCCGTATTTTTTAAAATCATTATAAACATACAATAATTTTATGAGCACACCAAAGTACAGTAATTCCTTCTCATCATGGTTCTCTTTATGCAAAATTTGACTTGGTGCAGCTTTCTGTT
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87616167 210 - 129401213 CACCCTTCAAGTTCACACTAACTCTAGTGATTTTGTTCATCTCTAAAGGTTGGATCTAC-TTTACTGATACTTTCCTCCTATAGGCAGAATGGTCATAAACTGGTCATTGAAAG----------ATGAGGTCTTTAAAAGTATAAAACA----------TGTGCTGAAATACAGAAATTCCTTTGCATCAT--CTCTGTCTGTGTAAAATTTGAATGATACCATGTTTCTCTC
i mm10.chr8                I 1948 C 0
s canFam3.chr16             17912284 227 -  59632846 CATCATTGAACTCCATTTTTACTCAGGTATTTAAATTAACCTGT-AAGGTTTAATTTATGCt--ttaataataataataaattttaataattGTTGGAAATTAGTCACCTAGAGTCCATATTTTTAAAAACTATCATAAAAATATGATAATTTCATAAGCACACCAAG--Acagtaatttcttctcattgtggttttctttacccaaaattggagtagaag-gggtttctttt
i canFam3.chr16            C 0 C 0
e calJac3.chr3                367975 93246 + 190850796 T
e panTro4.chr4             192915934 35667 + 193495092 M

a score=44730.000000
s hg38.chr4_KI270925v1_alt    240266 57 +    555799 tgaatacctt---ttTTTCTTAAATGTGGGAATtatatatatatatatacacacatatat
s nomLeu3.chr7b            113801988 45 + 115148730 TGAATACCAC---TTTTTCTTAAATGTGGGAATTAAATAAat------------atatat
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183618637 56 + 184069350 TGCATACCTT---TTTTTCTTAAATGT-GGAATTAAatatgtatttatgtatgtatatag
i rheMac3.chr5             C 0 I 13
s macFas5.chr5             189002369 56 + 189454096 TGCATACCTT---TTTTTCTTAAATGT-GGAATtaaatatgtatttatgtatgtatatat
i macFas5.chr5             C 0 I 12
s papAnu2.chr5             178426061 56 + 178775436 TGCatacctt---tttttcttaaatgt-ggaattaaatatgtatttatgtatgtatatat
i papAnu2.chr5             C 0 I 12
s chlSab2.chr7             135365660 56 + 135778131 TGCATACCTT---TTTTTCTTAAATGT-GGAATtaaatatgtatttatgtatgtatatat
i chlSab2.chr7             C 0 I 20
s mm10.chr8                 87616377 38 - 129401213 -----TCCTTGACTTTCCCTGAAGTATGAGAATC---------TTTAGCTAC--------
i mm10.chr8                C 0 C 0
s canFam3.chr16             17912511 40 -  59632846 ---ctacatc---ttctccccaactgtgagaact----------tcagGCAAATAT----
i canFam3.chr16            C 0 C 0
e calJac3.chr3                367975 93246 + 190850796 T
e ponAbe2.chr4_random        3948528 49202 -  23176937 T
e panTro4.chr4             192915934 35667 + 193495092 M

a score=226781.000000
s hg38.chr4_KI270925v1_alt    240323 118 +    555799 atatatatatata----------------------tatatatatatatatataCACACTCAAGTTGCC-ACCATGTCATATAATGGAAT---ATCTCTCCAGGTAGAAGAGATCTCT-GATTATTCAACTTTGTCTTCATTCTCT
s ponAbe2.chr4_random        3899326 118 -  23176937 atatatatgtata----------------------attatatatatatataaatCCACTCAAGTTGCC-ACCATGTCATATAATGGAAT---ATCTCTCCAGGTGGAAGAGATCTCT-GATTATTCATCTCTATCTTCATTCTCT
i ponAbe2.chr4_random      T 49202 C 0
s nomLeu3.chr7b            113802033 118 + 115148730 atatatatatata----------------------tatatatatatatGTTAGTCCACTCAAGTTGCC-ACTGTGTCATGTAATGGAAT---ATTTCTCCAGGTGGAAGAGATCTCT-GATTGTTCATCTCTATCTTCATTCTCT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183618706 138 + 184069350 atatctatgtatatacaaatatgacagcatgtt--tatatatatatatatTAGTCCACTCAAGTTGCC-ACCATGTCATATAATGGAAT---ATCTCTCCAGGTGGAAGAGATCTCT-GATTATTCATCTCTGTCTTCATTCTCT
i rheMac3.chr5             I 13 C 0
s macFas5.chr5             189002437 140 + 189454096 atatatatgtatatacacatatgacagcatgtttatatatatatatatatTAGTCCACTCAAGTTGCC-ACCATGTCATATAATGGAAT---ATCTCTCCAGGTGGAAGAGATCTCT-GATTATTCATCTCTGTCTTCATTCTCT
i macFas5.chr5             I 12 C 0
s papAnu2.chr5             178426129 136 + 178775436 atatatatgtatatacacatatggcagcatgtt----tatatatatatattagtccACTCAAGTTGCC-ACCATGTCATATAATGGAAT---ATCTCTCCAGGTGGAAGAGATCTCT-GATTATTCATCTCTGTCTTCATTCTCT
i papAnu2.chr5             I 12 C 0
s chlSab2.chr7             135365736 138 + 135778131 atatatatgtatatacacatatgacagcatgtt--tatatatatatatatTAGTCCACTCAAGTTGCC-ATCATGTCATATAATGGAAT---ATCTCTCCAGGTGGAAGAGATCTCT-GATTATTCATCTCTGTCTTCATTCTCT
i chlSab2.chr7             I 20 C 0
s mm10.chr8                 87616415 101 - 129401213 -------------------------------------------TATATTCTACCCAATCCAAACCACCAACTGTAGATTGTCACTGAGTCTGAGGTCTTCAGGCTGCAGAGAGCTCT-GGTCATTCATTCTTGTCTTTCTTCTct
i mm10.chr8                C 0 I 896
s canFam3.chr16             17912551  91 -  59632846 ----------------------------------------------ATGTTAGTGAATCCAAGATGCC-ACTATGTCCGATTAATGAAT---AGCTCTACAGATGGAAGAAAGCTCTGGATCATTCACCTTCACCTTCATC----
i canFam3.chr16            C 0 C 0
e calJac3.chr3                367975 93246 + 190850796 T
e panTro4.chr4             192915934 35667 + 193495092 M

a score=688379.000000
s hg38.chr4_KI270925v1_alt    240441 343 +    555799 CTGTTGCCATCTACCCAATTGGTAATAtattatctttaattttattttcttttattacatttcattgtgtgtttaACTAGTCATTtaactagcatttatatagcatatatgtggagcttattatatgccaggaattgttccaatcactttactgatactaattcatt-aactccttccaataattttatgagataattgcaattgttatctcggttttacagatgaagcaactgagggac-aagaggttaaataatgtgcccaagatcgtaaagctagttaccaccagagctgtaatcagagctgtaatcagagcccagttagtctggctccagagttagtcctT
s ponAbe2.chr4_random        3899444 344 -  23176937 CTGTTGCCATCTACCCAATTGGtaatatattatctttaattttattttcttttattaCATTTCATTGTGTGTTTAACTAGTCATTtaactagcatttatatagcatatacatgggacttattatgtgccaggaattgttccaatcactttactgatactaattcatttaactgcttccaataattttatgagataattgcgatcgtaatctcggttttacagatgaagcaactgagggac-aagaggttaaataatgtgcccaggatcgtaaagctagttaccaccagagctgtaatcatagctgtaatcagggcccaattagtctggctccagagttagtgctT
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113802151 339 + 115148730 CTGTTGCCATCTACCCAGTTGGTAATAtattatgtttaattttattttcttttattacatttcattgtgtgtt----taGTCATTTAACTAGCATTTATAcagcatatatgtggggcttattatatgccaggaattgttccaatcactttactgatactaattcatt-aattccttccaataattttatgagataattacaattgttatctcggttttacagatgaagtaactgagggac-aagaggttaaataatgtgcccaagatcgtaaagctagttaccactagagctgtaatcatagctgtaatcagagcccaattagtctgactccagagttagtcctT
i nomLeu3.chr7b            C 0 I 313
s rheMac3.chr5             183618844 343 + 184069350 CTGTTGCCATCCACCCAGTTGGTGATATATTACCTTTAAGTTTATTTTGTTTTATTACATTTCATTGTATGTTCAACTAGTCATTTAATTAGCATTTATATagcatatatgtggggtttcttatatgccaggaattgttccaatcattttactaatactaattcatt-aattacttccaattattttttgagataattgcaattgtcatcttgattttacagatgaagcaactgatggac-aagaggttaaataatgtgcccaaaatcataaagctagttaccgctagagctgtaatcatagctgtaatcagagcccaactagtctggctccagagttagtcctT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189002577 343 + 189454096 CTGTTGCCATCCACCCAGTTGGTGATAtattatctttaagtttattttgttttattacatttcattgtatgttCAACTAGTCATTTAATTAGCATTTATATagcatatatgtggggtttcttatatgccaggaattgttccaatcattttactaatattaattcatt-aattacttccaattattttttgagataattgcaattgtcatcttgattttacagatgaagcaactgatggac-aagaggttaaataatgtgcccaaaatcataaagctagttaccgctagagctgtaatcatagctgtaatcagagcccaactagtctggctccagagttagtcctT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178426265 343 + 178775436 CTGTTGCCATCCACCCAGTTGGTGATATATTATctttaagtttattttgttttattacatttcattGTATGTTCAACTAGTCATTTAATTAGCATTTATATAGCACATATGTGGGATTTCTTATATGCCAGGAATTGTTCCAATCATTTTACTAATACTAATTCATT-AATTACTTccaattattttttgagatgattgCAATTGTCAtcttgattttacagatgaagcaactGATGGAC-AAGAGGTTAAATAATGTGCCCAAAATCATAAAGCTAGTTACCGCTAGAGCTGTAATCATAGCTGTAATCAGAGCCCAActagtctggctccagagttagTCCTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135365874 343 + 135778131 CTGTTGCCATCCACCCAGTTGGTGATAtattttctttaagtttattttgttttattacatttcattgtatgttCAACTAGTCATTTAATTACCATTTATATagcatatatgtggggtttcttatatgccaggaattgttccaatcattttactaatactaattcatt-aattacttccaattattttatgagataattgcaattgtcatcttgattttacagatgaagcaactgatggac-aagaggttaaataatgtgcccaaaatcataaagctagttaccgctagagctgtaatcatagctgtaatcagagcccaattagtctggctccagagttagtcctT
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17912642 308 -  59632846 CTATTACCATTCACACAGTTGGCTATATAT----CTTTATTTCATTTAATTT--TTGTATTTTACTATATGTCTA-----TTCTTtaactagcacttacata-----------aggcttatcagatgccaggcagtattccaagcactttagcaatattaatttatc-taatccttctcatgactttatcagataattataatgattatcttcattctataggtaaagtaactgaggcacaaagaggataaataaactgcccaagattggagaggtaattactactaa------------agctgtgattggagcccaattggtctggctcc--agTCACTCATT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87616516 896 - 129401213 I
e calJac3.chr3                367975 93246 + 190850796 T
e panTro4.chr4             192915934 35667 + 193495092 M

a score=54641.000000
s hg38.chr4_KI270925v1_alt    240784 38 +    555799 AAAATCGATTATCACTCACTTTTCTGT---------tgtgtgtggtg
s ponAbe2.chr4_random        3899788 38 -  23176937 AAAATCGATTATCACTCACTTTTTTGT---------TGTGCGTGTAG
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113802803 37 + 115148730 aaaaTCGATTATCACTCACTTTTTtgt---------tgtgtgtgt-g
i nomLeu3.chr7b            I 313 C 0
s rheMac3.chr5             183619187 32 + 184069350 AAAATCAGTTATCACTCACTTTTTTGT---------TGTAT------
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189002920 32 + 189454096 AAAATCAGTTATCACTCACTTTTTTGT---------TGTAT------
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178426608 32 + 178775436 AAAATCAGTTATCACTCACTTttttgt---------tgtat------
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135366217 32 + 135778131 AAAATCAGTTATCACTCACTTTTTTGT---------TGTAT------
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17912950 44 -  59632846 AAAATCAATTAGCTTTCACTTTTTTTTTCgtgtgtgtgtgtgtg---
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87616516 896 - 129401213 I
e calJac3.chr3                367975 93246 + 190850796 T
e panTro4.chr4             192915934 35667 + 193495092 M

a score=286799.000000
s hg38.chr4_KI270925v1_alt    240822 134 +    555799 tgtgtgtgtgtgtgtgtgtgtgtgtTCTCACATGC---TGCTTAGGTAGTCCCCACGATATTGACCAGGAAGTGGATTCTGGATtttagttgttttacacaggaaatgtcatgctgtcctttagagagatccatt-----ac-
s ponAbe2.chr4_random        3899826 126 -  23176937 TTTGTGTGTGTGTGTGT--------TCTCACGTGC---TGCTTAGGTAGTCCCCACGATATTGACCAGGAAGTGAGTTCTGGATTTTAGTTGTTTTACACAGGAAATGTCATGCTGTCCTTTAGAGAAATCCATT-----AC-
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113802840 125 + 115148730 catg-gtgtgtgtgtgt--------TCTCACGTGC---TGCTTAGGTAGTCCCCACGATATTGACCAGGAAGTGAATTCTGGACTTTAGTTGTTTTACACAGGAAATGTCATACTGTCTTTTAGAGATATCCATT-----AC-
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183619219 121 + 184069350 -----GTGTGTATTTGT--------TCTCACGTGC---TGCTCAGGTAGTCCCCACAATATTGACCAGGAAGTGAATTCTGGCTTTTAGTTGTTTTACACAGGAAATGTCATGCTGTCCTTTAGAGAGATCCATT-----AC-
i rheMac3.chr5             C 0 I 6223
s macFas5.chr5             189002952 121 + 189454096 -----GTGTGTATTTGT--------TCTCACGTGC---TGCTCAGGTAGTCCCCACAATATTGACCAGGAAGTGAATTCTGGCTTTTAGTTGTTTTACACAGGAAATGTCATGCTGTCCTTTAGAGAGATCCATT-----AC-
i macFas5.chr5             C 0 I 3
s papAnu2.chr5             178426640 121 + 178775436 -----gtgtgtgtttgt--------tctcaCGTGC---TGCTCAGGTAGTCCCCACAATATTGACCAGGAAGTGAATTCTGGCTTTTAGTTGTTTTACACAGGAAATGTCATGCTGTCCTTTAGAGAGATCCATT-----AC-
i papAnu2.chr5             C 0 I 3
s chlSab2.chr7             135366249 120 + 135778131 -----GTGTGTGTTTGT--------TCTCACGTGC---TGCTCAGGTA-TCCCCACAATATTGACCAGGAAGTGAATTCTGGCTTTTAGTTGTTTTACACAGGAAATGTCATGCTGTCCTTTAGAGAGATCCATT-----AC-
i chlSab2.chr7             C 0 I 6180
s calJac3.chr3             190482963 131 - 190850796 --TGTTTGTGTGTCAGT--------GCT-GCGTGCGTTTGTTTAGACCGTACCCACAATACTGAACGGGAAGTGAATTCTGGCTTTCAGTAGTTTCACACAAGGAAGGTCGCGCTGTTCTTTAGAGAAAACCATTTACACAC-
i calJac3.chr3             I 145 C 0
s canFam3.chr16             17912994 137 -  59632846 tgtgtgtgtgtgtgtgtgtctgtgtgtTTGCATGCAG-TGCCTATGTGGAACCCACCATATTGACTGGGAAGAGAATTCCGGTTGCTAGTTGTTAAACACAGAAACTAACATGCTGCTGCATAGAGAGATCCATT-----CTC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87616516 896 - 129401213 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=27207.000000
s hg38.chr4_KI270925v1_alt    240956 24 +    555799 atcttggacctaaacatgagactc
s ponAbe2.chr4_random        3899952 24 -  23176937 ATCTTGGACCTAAACATGAAACTC
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113802965 24 + 115148730 ATCTTGGACGTAAACATGGAACTC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189003076 22 + 189454096 ACCCTGAACTT--GCATGAAACTC
i macFas5.chr5             I 3 I 6143
s papAnu2.chr5             178426764 22 + 178775436 ACCCTGAACAT--GCATGAAACTC
i papAnu2.chr5             I 3 I 6212
s calJac3.chr3             190483094 24 - 190850796 ATCTTGGACCCAAACATGAAACTC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17913131 24 -  59632846 GTCTTGAACCTAAACGTGAAACCA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87616516 896 - 129401213 I
e chlSab2.chr7             135366369 6180 + 135778131 I
e rheMac3.chr5             183619340 6223 + 184069350 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=191706.000000
s hg38.chr4_KI270925v1_alt    240980 315 +    555799 tctttctgccaaacaggatttaaaatgccGATCCAATGACCATAGAATAGAATGTGCTCATGGTGGCTGAGGAAATGCAGA-ACCAGGGAGAGTATTGGA-AACAGTCCTGTAATTAGATACACGGAAAACTGCAGCATCAAAAAAC----ACGGTATGATCCTTA-AGACGTGTGTTT-TAAAAAAGCTTC-ATGAAAATAAACTGGTAAAAAACACTGAACACTTTAAGGAACTACTTTGAATGTGTACAGAAACAATAGGCCTTCTAATAACGTTTGGTTGATTTGCTACAAGTTTGTAAAGATATGAAAAGGTTCCAATA
s ponAbe2.chr4_random        3899976 315 -  23176937 TCTTTCTGCCAAACAGGATTTAAAATGCCGATCCAATGACCATAGAATAGAATGTGCTCATGGTGGCTGAGGAAGTGCAGA-ATGAGGGAGAATATTGGA-AAGAGTCCTCTAATTAGATACACGGAAAACTGCAGCATCAAAAAAC----ACGGTATGATCCTTA-AGACGTGTGTTT-AAAAAAAGCTTC-GTGAAAATAAACTGGTAAAAAACACTGAACACTTTAAGGAACTACTTTGAATGTGTACAGAAACAATACGCCTTCCAATAATGTTTGGTTGATTTGCTACAAGTTTGTAAAGATATGAAAATGTTCCAATA
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113802989 315 + 115148730 TCTTTCTACCAAACAGGATTTAAAATGCCGATCCAATCACCATAGAGTAGAATGTGCTAATGGTGGCTGAGGAAATGCAGA-ACCAGGGAGAGTATTGGA-AAGAGCCCTGTAATTACATACACGGAAAACTGCAGCATC-AAAAAC----ACGGTATGATCCTTA-AGACGTGTGTTTAAAAAAAAGCTTC-ATGAAAATAAACTGGTAAAAAACACTGAACACTTTAAGGAACTAATTTGAATGTGTACAGAAACAATAGGCCTTCCAATAAAGTTTGGTTGATTTGCTACAACTTTGTAAAGATATGAAAAGGTTCCAATA
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190483118 318 - 190850796 TCTTTTGGCCAAACAGGATTTAAAATGCCGATCCAGTCACCACGGAATAGAAAATGCTCGTGATGGCTGAGGAAGTGCAGA-ACCTAGGAGAATATGGGACAAGGGCCCTCTAATTAGACACACGGAAATCTATAGTGTCAAAAAAC--AGACGGTATGATCCCGA-AGACACGTATTT-TTAAAAAGCTTC-ATGGAAATAAACTGGTAAAAAACACTGAACACTTTAAGGAGCTACTTTGAATATGTACAGAAATGAAAAGCATCCCGATAAAGTTTGGTTGGTTCGCTACAACTCTGTAAAGATATGAAAAGATTCCAGTA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17913155 318 -  59632846 TCCTCCTGCCACACAGGATTCAAAATGCCAATCCAATAACCACAGAAAAGAAAATGCTTCTGGTAACTAAGAAGATGCAGATACCAGAGAGAACACAGGCCAAAAGCCCTTAAGTGAGA-ACAAAGAGAACTGTAGCATC-AAAAGCTCAGATAGAATGACATTTACAAACAGATAT---GAAAAAAGTTCCTATGGAAGTAAGCTGATTAAAAAGACTCAAGACTTTCAAACACTGCTTTGAATATGTACATAAGCAATA-GCCTTTAGGTGAGGCTTGACTGATTTGTTGCAGCGTTGTAAAGATATGAAAAAATATCAATA
i canFam3.chr16            C 0 I 5588
e mm10.chr8                 87616516 896 - 129401213 I
e chlSab2.chr7             135366369 6180 + 135778131 I
e papAnu2.chr5             178426786 6212 + 178775436 I
e macFas5.chr5             189003098 6143 + 189454096 I
e rheMac3.chr5             183619340 6223 + 184069350 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=600.000000
s hg38.chr4_KI270925v1_alt    241295 1 +    555799 C
s ponAbe2.chr4_random        3900291 1 -  23176937 C
i ponAbe2.chr4_random      C 0 C 0
s nomLeu3.chr7b            113803304 1 + 115148730 C
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190483436 1 - 190850796 C
i calJac3.chr3             C 0 I 2844
e mm10.chr8                 87616516 896 - 129401213 I
e canFam3.chr16             17913473 5588 -  59632846 I
e chlSab2.chr7             135366369 6180 + 135778131 I
e papAnu2.chr5             178426786 6212 + 178775436 I
e macFas5.chr5             189003098 6143 + 189454096 I
e rheMac3.chr5             183619340 6223 + 184069350 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=1148.000000
s hg38.chr4_KI270925v1_alt    241296 5 +    555799 AATGT
s ponAbe2.chr4_random        3900292 5 -  23176937 GATGT
i ponAbe2.chr4_random      C 0 I 5812
s nomLeu3.chr7b            113803305 5 + 115148730 AATGT
i nomLeu3.chr7b            C 0 I 10691
e mm10.chr8                 87616516 896 - 129401213 I
e canFam3.chr16             17913473 5588 -  59632846 I
e calJac3.chr3             190483437 2844 - 190850796 I
e chlSab2.chr7             135366369 6180 + 135778131 I
e papAnu2.chr5             178426786 6212 + 178775436 I
e macFas5.chr5             189003098 6143 + 189454096 I
e rheMac3.chr5             183619340 6223 + 184069350 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=0.000000
s hg38.chr4_KI270925v1_alt    241301 3 +    555799 ATG
e mm10.chr8                 87616516 896 - 129401213 I
e canFam3.chr16             17913473 5588 -  59632846 I
e calJac3.chr3             190483437 2844 - 190850796 I
e chlSab2.chr7             135366369 6180 + 135778131 I
e papAnu2.chr5             178426786 6212 + 178775436 I
e macFas5.chr5             189003098 6143 + 189454096 I
e rheMac3.chr5             183619340 6223 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4_random        3900297 5812 -  23176937 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=3483.000000
s hg38.chr4_KI270925v1_alt    241304 5 +    555799 GAAGC
s ponAbe2.chr4_random        3906109 5 -  23176937 GAAGT
i ponAbe2.chr4_random      I 5812 C 0
s rheMac3.chr5             183625563 5 + 184069350 GAAAC
i rheMac3.chr5             I 6223 C 0
s macFas5.chr5             189009241 5 + 189454096 GAAAC
i macFas5.chr5             I 6143 C 0
s papAnu2.chr5             178432998 5 + 178775436 GAAAc
i papAnu2.chr5             I 6212 C 0
e mm10.chr8                 87616516 896 - 129401213 I
e canFam3.chr16             17913473 5588 -  59632846 I
e calJac3.chr3             190483437 2844 - 190850796 I
e chlSab2.chr7             135366369 6180 + 135778131 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=22515.000000
s hg38.chr4_KI270925v1_alt    241309 16 +    555799 GTACattcattcattc
s ponAbe2.chr4_random        3906114 16 -  23176937 GTACattcattcattc
i ponAbe2.chr4_random      C 0 C 0
s rheMac3.chr5             183625568 16 + 184069350 GTACattcattcattc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189009246 16 + 189454096 GTACattcattcattc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178433003 16 + 178775436 gtacattcattcattc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135372549 16 + 135778131 GTACattcattcattc
i chlSab2.chr7             I 6180 C 0
e mm10.chr8                 87616516 896 - 129401213 I
e canFam3.chr16             17913473 5588 -  59632846 I
e calJac3.chr3             190483437 2844 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=365527.000000
s hg38.chr4_KI270925v1_alt    241325 229 +    555799 aacagatatttgtgtaagtccctgtgtgtccactgttccaaagagaatgaggcaaaacgtccgccctcatgggccttacattctagtaggaaacatttgcaagataaataagt-tagtttacaacatgtcagggaataaacagtgagaaggaaaataaagcaggaagaagggatgagAC--GGGGCAGCATTTTAGATCGGTAG-TTTT-TAAACAAACAGATCATTGTTTTCT
s ponAbe2.chr4_random        3906130 226 -  23176937 aacagatatttgtgtaagtccctgtgtgtccactcttccaaagagaatgaggcaaaacatccaccctcatgggccttgcgttctagtagaaaacatttgcaagataaataagtatagtttacagcatgtcagggaataaacagtgagaaggaaaataaagcaggaagaagggatgagAC--GGGGCAGCATTTTAGATCGGTAG-TTTT-----AAAACAGACCATTGTTTTCT
i ponAbe2.chr4_random      C 0 C 0
s rheMac3.chr5             183625584 232 + 184069350 aacagatattagtgtaagcccctgtgtgtccactgttccaaagagaatgaagcgaaatgtctgccctcatgggccttacattctagtagaaaacattcacaagataactaagtgtagtttacagcatctcagggaataaacagtg-gaaggaaaataaagcaggaagaaaggagaaGACCTGGGGCAGCATTTTAGATGGGTAG-TTTTTTAAACAAACAGACCATTGTTTTCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189009262 233 + 189454096 aacagatattagtgtaagcccctgtgtgtccactgttccaaagagaatgaagcgaaacgtctgccctcatgggccttacattctagtagaaaacattcacaagataactaagtgtagtttacagcatctcagggaataaacagtgagaaggaaaataaagcgggaagaaaggagaaGACCTGGGGCAGCATTTTAGATGGGTAG-TTTTTTAAACAAACAGACCATTGTTTTCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178433019 234 + 178775436 aacagatattagTGTAAGCCCCTGTGTGTCCACTGTTCCAAAGAGAATGAAGCAAAATGTCTGCCCTCATGGGCCTTACATTCTAGTAGAAAACATTCGCAAGATAACTAAGTGTAGTTTACAGCATCTCAGGGAATAAACagtgagaaggaaaataaagcgggaagaagggagaagaccTGGGGCAGCATTTTAGATCGgtagtttttttaaacaaacagaccattgttttct
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135372565 233 + 135778131 aacagatatttgtgtaaacccctgtgtgtccactgttccaaagagaacgaagtgaaatgtctgccctcatgggccttacattctagtagaaaacattcacaagataactaagtgtagtttacagcatctcagggaataaacagtgagaaggaaaataaagcgggaagaagggagaagacgtgGGGCAGCATTTTAGATCAGTAG-TTTTTTAAACAAACAGACCATTGTTTTCT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190486281 229 - 190850796 aacaaatatttgtgcaagcccctgtgtgttcgctgttccaaagagaatga-gcaaagcatctgccctcatggaccttacattccagcggaaaacatttgcaagataagtaaatgtcgtttacagcttgttaggaaatgagcagtgagaaggaaaataaagcaggaagagggtctgggatgtagggCACCATGTTAGATCAGGAG-TCTTTTAAACAAA---ATCACTGTTTTCT
i calJac3.chr3             I 2844 C 0
e mm10.chr8                 87616516 896 - 129401213 I
e canFam3.chr16             17913473 5588 -  59632846 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=792838.000000
s hg38.chr4_KI270925v1_alt    241554 448 +    555799  
s ponAbe2.chr4_random        3906356 449 -  23176937  
i ponAbe2.chr4_random      C 0 C 0
s rheMac3.chr5             183625816 455 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189009495 455 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178433253 497 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135372798 497 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190486510 438 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17919061 435 -  59632846  
i canFam3.chr16            I 5588 C 0
e mm10.chr8                 87616516 896 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=502886.000000
s hg38.chr4_KI270925v1_alt    242002 311 +    555799 -TCACTTCTACGCTGGGTAAGCTGAGGTGTGTCACtgcaggacagctctccaggtggccttggaagatgtcctgggaatgcaacactctgagataagggtgagcaggctggaattctcaggctctgttcccaccctcccctagaaacgggacgtccttcaattctggagctccttgcatcatgttcccccgtggtgtaaaacccagtgtgggctgcatttcagggtccctcatctacagcacaacgggggcacacacagtcaaagctccatccac-cccggcagctttctgagtctcgaggaagcagct-ccca
s ponAbe2.chr4_random        3906805 311 -  23176937 -tcacttctatgctgggtaagctgaggtgtgtcactgcaggacagctctccaggtggccttggaagatgtcctgggaatgcaacactctgagataagagggagcaggctggaattctcaggctctgttcccaccctcccctagaaacgggaggtccctcaattctggagctcattgcatcatgtacccccgtggtgtaaaacccagggtgggctgcttttcagggtccctcatctacagcacaacaggggcacacacagtcaaagctccatccac-cctggcagctttctgagtctcgaggaagcagct-ccca
i ponAbe2.chr4_random      C 0 C 0
s rheMac3.chr5             183626271 310 + 184069350 -TCACTTCTACACTGGGTAAGCTGAGGTGTGTCACTGCAGAACCGCTCTCCAGGTGGCCTCGGAAGacgttctgggaatacgacactctgagataagagggagctggctggaaggctcaggctctattcccaccctcccctagaagtgggacgtccttcaatgctgtagctcattgcatcatggttccctgtggtgtaaaacccagggcgggctgctttccagggtcccccgtctgca-cacaaagggggcacacacaggcaaggctccgtccac-cttggcagctttctgagtctcgaggaagcagct-ccca
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189009950 310 + 189454096 -TCACTTCTACACTGGGTAAGCTGAGGTGTGTCACTGCAGAACCGCTCTCCAGGTGGCCTCGGAAGacgttctgggaatgcgacactctgagataagagggagctggctggaaggctcaggctctattcccaccctcccctagaagtgggacgtccttcaatgctgtagctcattgcatcatggttccctgtggtgtaaaacccagggcgggctgctttccagggtcccccgtctgca-cacaaagggggcacacacaggcaaggctctgtccac-cttggcagctttctgagtctcgaggaagcagct-cccg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178433750 309 + 178775436 -TCACTTCCACCCTGGGTAAGCTGAGGTGTGTCACTGCAGGACAGCTCTCCAGGTGGCCTCGGAAGACGTT-TGCGAATGCGACACTCTGAGATAAGAGGGAGCTGGCTGGAAGGCTCAGGCTCTGTTCCCACCCTCCCCTAGAAGTGGGACGTCCTTCCATGCTGTAGCTCATTGCATCATGGTTCCCTGTGGTGTAAAACCCAGGGCAGGCTGCTTTCCAGGGTCCCCCGTCTGCA-CACAAAGCGGGCACACACAGGCAAGGCTCTGTCCAC-CTTGGCAGCTTTCTGAGTCTCGAGGAAGCAGCT-CCCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135373295 310 + 135778131 -TCACTTCTACACTGGGTAAGCTGAGGTGTGTCACTGCAGAACCGCTCTCCAGGTGGCCTtggaagacgttctgggaatgcgacactctgagataagagggagctggctggaaggctcaggctctgttcctaccctcccctagaagtgggacgtccttcaatgctgtagctcactgcatcatggttccctgtggtgtaaaacccagggcgggctgctttccagggtccctcgtctgca-cacaaagggggcacacacaggcaaggctccatccac-cttggcagctttctgagtctcgaggaagcagct-ccca
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190486948 308 - 190850796 ATCACCTCTTCACTGGGGAACCGGAGGTGTGTCACCGCAGGATTGTTCTCCAGGCGGCCTTGGGAaatgtgctgggaatgcaacactctgagataag-gggagctggctgggacactcgggctctgctcccaccctcccctagaaatggggtgcccttcactgctgtagctcactgcgt-----ttccccatggtgtaaagcccagtgggggctgctttccagggtccctcatctgcagcataacgaggacacacagagtcaaggccccgttcactccgggcagctttctgagtcttggggaggcagctcccca
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87616516 896 - 129401213 I
e canFam3.chr16             17919496   0 -  59632846 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=208411.000000
s hg38.chr4_KI270925v1_alt    242313 141 +    555799 caaactcctgttgttccttgctgcctatccacaagcatcaaatc-tgcgtcatgtgagttgatgcctgggagtgtgctctcc----------------ctccacagactcaggcacgccagtc---acc-gctcacagtgagcctgcctcacaGGTCGTTCT
s ponAbe2.chr4_random        3907116 158 -  23176937 cgaactcctgttgtcccgtgctgcctatccacaagtatcaaatc-tgcgtcatgtgagttgatgcctgtgagtgtgctctcctgtgagtgtgctctccctccacagacttaggcatgccagtc---accagcgcacagtgagcctgcctcacagatcattct
i ponAbe2.chr4_random      C 0 C 0
s rheMac3.chr5             183626581 141 + 184069350 cgaactcctgttgtcccttcctgcctatccacgagcatcagatc-tgcctcttgtgagtggatgcctgtgagggtgccctcc----------------ctctacagactcagacacgccagtc---cta-acgcacagggagcccacctcacaGATCATTAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189010260 141 + 189454096 cgaagtcctgttgtcccttgctgcctatccacgagcatcagatc-tgcctcttgtgagttgatgcctgtgagggtgctctcc----------------ctctacagactcagacacgccagtc---cca-acacacagtgagcccacctcacaGAtcattct
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178434059 141 + 178775436 CGAACTCCTGTTGTCCCTTGCTGCCTATCCACGAGTATCAGATC-TGCATCTTGTGAGTTGGTGCCTGTGAGGATGCTCTCC----------------CTCTACAGACTCAGACACGCCAGTC---CCA-GCGCACAATGAGCCTACCTCACAGATCATTCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135373605 141 + 135778131 cgaactcctgttgtcccttgctgcctatccacgagtatcagatc-tacatcttgtgagctgatgcctgtgagggtgctctcc----------------ctctacagactcacacacgccagtc---cca-gcgcacagtgagcctacctcacaGAtcattct
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190487256 137 - 190850796 cgagtttctgttgtccctcgctgcctgtctgtacgtaaca-atc-tgcacc-tgtgagttcctgcctgtgag--tgttgtcc----------------ctccacaggctcagggaagccacca---cgg-gcgctcagtgagcctgattcacaGATCGTtct
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87617412 142 - 129401213 caggcttctgttgtcccttgaagcatatctatgtgta--aaatcatattttataaaatttgtttcatataaaga-gtcttat----------------tttgctggtctcagacaagtcagtcagtatc-atgcacggtgaacctccttcgcaGTTACTTTT
i mm10.chr8                I 896 C 0
e canFam3.chr16             17919496   0 -  59632846 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=1417691.000000
s hg38.chr4_KI270925v1_alt    242454 809 +    555799  
s ponAbe2.chr4_random        3907274 808 -  23176937  
i ponAbe2.chr4_random      C 0 C 0
s rheMac3.chr5             183626722 785 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189010401 785 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178434200 786 + 178775436  
i papAnu2.chr5             C 0 I 303
s chlSab2.chr7             135373746 786 + 135778131  
i chlSab2.chr7             C 0 I 306
s calJac3.chr3             190487393 776 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87617554 776 - 129401213  
i mm10.chr8                C 0 C 0
s canFam3.chr16             17919496 777 -  59632846  
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=13169.000000
s hg38.chr4_KI270925v1_alt    243263 6 +    555799 GCTTGC
s ponAbe2.chr4_random        3908082 6 -  23176937 GCTTGC
i ponAbe2.chr4_random      C 0 C 0
s rheMac3.chr5             183627507 6 + 184069350 GCTTGC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189011186 6 + 189454096 GCTTGC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178435289 6 + 178775436 gcttgc
i papAnu2.chr5             I 303 C 0
s chlSab2.chr7             135374838 6 + 135778131 GCTTGC
i chlSab2.chr7             I 306 C 0
s calJac3.chr3             190488169 6 - 190850796 ACTTGC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87618330 6 - 129401213 ATTTGT
i mm10.chr8                C 0 C 0
s canFam3.chr16             17920273 6 -  59632846 attttt
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=1694.000000
s hg38.chr4_KI270925v1_alt    243269 1 +    555799 A
s ponAbe2.chr4_random        3908088 1 -  23176937 A
i ponAbe2.chr4_random      C 0 C 0
s rheMac3.chr5             183627513 1 + 184069350 A
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178435295 1 + 178775436 a
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135374844 1 + 135778131 A
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190488175 1 - 190850796 A
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87618336 1 - 129401213 G
i mm10.chr8                C 0 C 0
s canFam3.chr16             17920279 1 -  59632846 a
i canFam3.chr16            C 0 C 0
e macFas5.chr5             189011192 0 + 189454096 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=7565.000000
s hg38.chr4_KI270925v1_alt    243270 6 +    555799 TGTTTT
s ponAbe2.chr4_random        3908089 6 -  23176937 TATTTT
i ponAbe2.chr4_random      C 0 C 0
s papAnu2.chr5             178435296 6 + 178775436 tatttt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135374845 6 + 135778131 TATTTT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190488176 6 - 190850796 TACTTT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87618337 6 - 129401213 TATTTA
i mm10.chr8                C 0 C 0
s canFam3.chr16             17920280 6 -  59632846 tttttt
i canFam3.chr16            C 0 I 2073
e macFas5.chr5             189011192 0 + 189454096 C
e rheMac3.chr5             183627514 0 + 184069350 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=-221.000000
s hg38.chr4_KI270925v1_alt    243276 2 +    555799 TT
s ponAbe2.chr4_random        3908095 2 -  23176937 TT
i ponAbe2.chr4_random      C 0 C 0
s papAnu2.chr5             178435302 2 + 178775436 ta
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135374851 2 + 135778131 TA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190488182 2 - 190850796 GA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87618343 2 - 129401213 TT
i mm10.chr8                C 0 I 14
e canFam3.chr16             17920286 2073 -  59632846 I
e macFas5.chr5             189011192 0 + 189454096 C
e rheMac3.chr5             183627514 0 + 184069350 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=175200.000000
s hg38.chr4_KI270925v1_alt    243278 236 +    555799 AAATTAAAATAcaggtcctcctagacttccagtggggttacagcctgataaactaatcataagtctaaaatatcataaatcaaaatgcatttaataccttgataaacccatgataaactcaaaatatcctaagg------taaaccattgtaagtccagatgctccttgacctacgatggggttacgtcccaataaacctattgtaagtcaaaaaatcctaaatt---caagttagtcagggTTT
s ponAbe2.chr4_random        3908097 236 -  23176937 AAATTAAAATACATGTCctcctagacttccagtggggttacagcctgataatctaatcataagtctaaaatatcataaatcaaaatgcatttagtacCTTGATAAACCCATGATAAACTCAAAATATCCTAAGG------TAAACCACTGTAAGTCcagatgctccttgacctaccatggggttacgtcccaataaacctattgtaagtcaaaaaatcctaaatt---caagttagtcagggTTT
i ponAbe2.chr4_random      C 0 C 0
s papAnu2.chr5             178435304 235 + 178775436 aaattaaaatacaggtcCTCCTGGACTTTCAGTGGGGTTACAGCCTGATAAACTCATCATAAGTCTAAAATATCATAaatcaaaatgcatttaataccttGTTAAATCCATGATAAACTCAAAATATCCTAAGG------TAAACTATTGGAAGTCCAGATGCTCCTTGATTTACAATGGGATTACGTCCCAGTAAACCTATTATAAGtcaaaaaattctaaatt---aaagtTA-TCAGGGTTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135374853 241 + 135778131 AAATTAAAATAcaggtcctcctggactttcagtggggttacagactgataaactcatcataaatctaaaatatcataaatcaaaatgcatttaatacCTTGTTAAACCCATGATAAACTCAAAATATCCTAAGGTTAAAATAAACTATTGGAAGTCcagatgctccttgatttacaatggggttacgtcccaataaacctattgtaagtcaaaaaattctaaatt---aaaGTTA-TCAGGGTTT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190488184 227 - 190850796 AAATTTAAACAcaggtccttcttgacttccagtggggttacagcctgacatactcatcgtgagtctaaagtatcgtaagtc-aaatgcatttaat-----------CCCATGATAAACTCAAAATATCCTAAGG------TAAACGCTTTTAAGTCcagatgctccttgacttataatgcggttacgtcccaaaaaacctatcgtaagtcaaaaaaccctaaattacaccagtaagtcagggTTT
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87618345  14 - 129401213 I
e canFam3.chr16             17920286 2073 -  59632846 I
e macFas5.chr5             189011192   0 + 189454096 C
e rheMac3.chr5             183627514   0 + 184069350 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=3295.000000
s hg38.chr4_KI270925v1_alt    243514 3 +    555799 GTG
s ponAbe2.chr4_random        3908333 3 -  23176937 GTG
i ponAbe2.chr4_random      C 0 C 0
s papAnu2.chr5             178435539 3 + 178775436 GTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135375094 3 + 135778131 GTG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190488411 3 - 190850796 GTG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17922359 3 -  59632846 GTT
i canFam3.chr16            I 2073 C 0
e mm10.chr8                 87618345 14 - 129401213 I
e macFas5.chr5             189011192 0 + 189454096 C
e rheMac3.chr5             183627514 0 + 184069350 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=108239.000000
s hg38.chr4_KI270925v1_alt    243517 89 +    555799 TTTCTTTCTCTTAGTTCTCCAAACATTCATGTTGAAGGACCTAGAGAGGAACGC-AGGGGAGATTTTAGAAAGACATAAAGGAAGTTTGC
s ponAbe2.chr4_random        3908336 89 -  23176937 TTTCTTTCTCTTAGTTCTCCAAACATTCATGTTGAAGGACCTAGAGAGGAACGC-AGGGGAGATTTTAGAGAGACATAAAGGAAGTTTGC
i ponAbe2.chr4_random      C 0 C 0
s papAnu2.chr5             178435542 83 + 178775436 TT--TTTCTCTCAGTTCTCCAAACATTCATGTTGAAGGACCTAGAGAAGAACAC-GGGGGAGATTATAGAGAGACAAA----AAGTTTGC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135375097 89 + 135778131 TTTCTTTCTCTCAGTTCTCCAAACATTCATGTTGAAGGACCTAGAGAGGAACGT-GGGGGAGATTATAGAGAGACATAAAGGAAGTTTGC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190488414 90 - 190850796 TTCCTTTCCATTAGTTCTCCAAACATTCACGTTGAAGGACCTAGAGGGCAATGCAGGGGGAGGTTGTAGAGAGACCTCAGGGAAGTTTGC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87618359 85 - 129401213 TTTGTTTCTCTTGGTACTCC-AATGTTCATTTGGAAGGACACAGAGA--AATAC--TGAGAGATTGCAGAGAAACATTAAGGAAGTTTGG
i mm10.chr8                I 14 C 0
s canFam3.chr16             17922362 90 -  59632846 TTTATTTCTCTTAGCTCTCCAAGTGTTCACATTGAAGGACTTAGCAAGAAATACAGGGAGAGATTACAGAAAGACATAAAGGAAGTTTAC
i canFam3.chr16            C 0 I 325
e macFas5.chr5             189011192  0 + 189454096 C
e rheMac3.chr5             183627514  0 + 184069350 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=20498.000000
s hg38.chr4_KI270925v1_alt    243606 23 +    555799 AAGAACGTATCCTTTATGTCCCA
s ponAbe2.chr4_random        3908425 23 -  23176937 AAAAACTTATCCTTTATGTCCCA
i ponAbe2.chr4_random      C 0 C 0
s papAnu2.chr5             178435625 23 + 178775436 AAAAACGTATCCTTTATGTCCCG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135375186 23 + 135778131 AAAAACGTATCCTTTATGTTCCG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190488504 23 - 190850796 AAAAACCTCTCCTTTATGTCCCG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87618444 22 - 129401213 AGAAACATA-ACTTTATGagcca
i mm10.chr8                C 0 I 4011
e canFam3.chr16             17922452 325 -  59632846 I
e macFas5.chr5             189011192  0 + 189454096 C
e rheMac3.chr5             183627514  0 + 184069350 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=66187.000000
s hg38.chr4_KI270925v1_alt    243629 84 +    555799 TGGTTTCTTTTATGAACGtaaactttttatttagtataatatgcatccagagatgtggatggattacaagtggtacagctcaac
s ponAbe2.chr4_random        3908448 84 -  23176937 TGGTTTCTTTTATGAACGtaaactttttattgagtataatatgcatccagagatgtggacggattataagtggtacagctaaac
i ponAbe2.chr4_random      C 0 C 0
s papAnu2.chr5             178435648 84 + 178775436 TGGTTTCTTTTATGAATGTCAACTTTTTATTGAGTATAATATGCACCCAGAGATGTGTACGGATTATAAGTGGTACAGCTCAAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135375209 84 + 135778131 TGGTTTCTTTTATGAATGTCaactttttattgagtataatatgcacccagagatgtgtacggattataagtggtacagctcaac
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190488527 84 - 190850796 TGGTTTCTTTTAGGAGCGtaagctttttatttagtgtaatatgcatccagagaaatgtgcagattgtaagtggcacagctcaaC
i calJac3.chr3             C 0 I 3766
e mm10.chr8                 87618466 4011 - 129401213 I
e canFam3.chr16             17922452 325 -  59632846 I
e macFas5.chr5             189011192  0 + 189454096 C
e rheMac3.chr5             183627514  0 + 184069350 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=52434.000000
s hg38.chr4_KI270925v1_alt    243713 107 +    555799 aaacttgcacaaaacaatcacaaccatctagtcagcacctggatcaagaaacagagagcattactgcgcccccaaaaccttcctggtgcccttccagtcactacctg
s ponAbe2.chr4_random        3908532 107 -  23176937 aaactttcacaaaacaaacacagatatctagtcagcacctggatcaagaaacagagagcattactgcacccccaaaaccttcctggtgtccttccagtcactacccc
i ponAbe2.chr4_random      C 0 I 10
s papAnu2.chr5             178435732 107 + 178775436 AGAGTTGCACAAAGCAAACACAGCCATCTAGTCAGCACCTGGATCAAGAAACAGAGAGCATTACTGAGCCCCCAAAACCTTCCTGGTGCCCTTCCTGTCACTACCCC
i papAnu2.chr5             C 0 I 10
s chlSab2.chr7             135375293 107 + 135778131 agagttgcacaaagcaaacacagccatctagtcagcacctggatcaagaaacagagagcattactgagcccccgaaaccttcctggtgcccttcctatcactacccc
i chlSab2.chr7             C 0 I 54
e mm10.chr8                 87618466 4011 - 129401213 I
e canFam3.chr16             17922452 325 -  59632846 I
e calJac3.chr3             190488611 3766 - 190850796 I
e macFas5.chr5             189011192   0 + 189454096 C
e rheMac3.chr5             183627514   0 + 184069350 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=8212.000000
s hg38.chr4_KI270925v1_alt    243820 46 +    555799 agcctctactctgagcctctaagaccatagtaatgttttaccagtt
s ponAbe2.chr4_random        3908649 46 -  23176937 agctactaccctgagcctctaagaccataggattgttttaccagtt
i ponAbe2.chr4_random      I 10 C 0
s papAnu2.chr5             178435849 44 + 178775436 AACTACTACCCTGAGCCTCTAACACCATAGGTTAGTTCTaccag--
i papAnu2.chr5             I 10 C 0
e mm10.chr8                 87618466 4011 - 129401213 I
e canFam3.chr16             17922452 325 -  59632846 I
e calJac3.chr3             190488611 3766 - 190850796 I
e chlSab2.chr7             135375400 54 + 135778131 I
e macFas5.chr5             189011192  0 + 189454096 C
e rheMac3.chr5             183627514  0 + 184069350 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=1672.000000
s hg38.chr4_KI270925v1_alt    243866 4 +    555799 cctt
s ponAbe2.chr4_random        3908695 4 -  23176937 cctt
i ponAbe2.chr4_random      C 0 C 0
s papAnu2.chr5             178435893 3 + 178775436 -ctt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135375454 3 + 135778131 -ctt
i chlSab2.chr7             I 54 I 1
e mm10.chr8                 87618466 4011 - 129401213 I
e canFam3.chr16             17922452 325 -  59632846 I
e calJac3.chr3             190488611 3766 - 190850796 I
e macFas5.chr5             189011192 0 + 189454096 C
e rheMac3.chr5             183627514 0 + 184069350 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=910.000000
s hg38.chr4_KI270925v1_alt    243870 1 +    555799 t
s ponAbe2.chr4_random        3908699 1 -  23176937 t
i ponAbe2.chr4_random      C 0 C 0
s rheMac3.chr5             183627514 1 + 184069350 t
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178435896 1 + 178775436 t
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135375458 1 + 135778131 t
i chlSab2.chr7             I 1 C 0
e mm10.chr8                 87618466 4011 - 129401213 I
e canFam3.chr16             17922452 325 -  59632846 I
e calJac3.chr3             190488611 3766 - 190850796 I
e macFas5.chr5             189011192 0 + 189454096 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=363279.000000
s hg38.chr4_KI270925v1_alt    243871 294 +    555799 ttttttttttttttt-gagatggagtctcactctgtcaa-caagatggagttcagtggcgtgatctcggctcactgcaaactctgcctcccgagttcaagcaattcccacctcagcctcccgagtagttgggactacaggcacgtaccaccacactcggttaatttttttgtagttttagtagagacggggtttctctatgttggccaggctggtctcgagctcctgacctcgtgatctgcccacctcggcctcccaaagtgctgggattacaggcctgagccactacacccagcc
s ponAbe2.chr4_random        3908700 295 -  23176937 ttttttttttttttttgagatggagtctcactctgtcaa-caggttggagttcagtggcatgatcttggctcactgcaaactctgcctcccgagttcaagcaattcccacctcagcctcctgagtagttgggactacaggcacgtaccaccacacccggttaatttttttgtagttttagtagagacggggtttcactattttggccaggctggtctcgagcttctgacctcgtgatctgcccacctcagcctcccaaagtgctgggattacaggcatgagccaccacacccagcc
i ponAbe2.chr4_random      C 0 C 0
s rheMac3.chr5             183627515 295 + 184069350 ttttttttttttttt-gaggcagagtctcgctctgtcgctcaggctggagtgcggtggtgcaatctcggctcactgcaagctccgcctcccgggttcaagcaattcctgcctcaacctcctgagtagttgggactacaggtatgtgccgccacacccagttaatttttttgtagttttagtagagacagggtttcactatgttggccaggctggtctcgaactcctgaccttgtgatctgcccacctcggcctcccaaagtgctgggattataggcgtgagccaccacacccagcc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189011192 295 + 189454096 ttttttttttttttt-gaggcggagtctcgctctgtcgctcaggctggagtgcggtggtgcaatctcggctcactgcaacctccacctcccgggttcaagcaattcctgcctcaacctcctgagtagttgggactacaggtatgtgccgccacacccagttaatttttttgtagttttagtagagacagggtttcactatgttggccaggctggtctcgaactcctgacctcgtgatctgcccacctcggcctcccaaagtgctgggattataggcgtgagccaccacacccagcc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178435897 294 + 178775436 tgttttgttttgttt-gagatggagtctcaccctgtcac-caggatggagttcagtggcatgatctcggctcgctgcaagctccgcctcctgggttcaagcaattcctgcctcaacctcctgagtagttgggactacaggtatgtgccgccacacccagttaatttttttgtagttttagtagagacagggtttcactatgttggccaggctggtctcgaactcctgacctcgtgatctgcccacctcggcctcccaaggtgctgggattataggcatgagccaccacacccagcc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135375459 294 + 135778131 gttttgttttttttt-gagatggagtctcaccttgtcac-caggatggagttcagcggcatgatctcggctcactgcaaactccgcctcccgggttcaagcaattcctgcctcagcctcctgagtagttgggactacaggtacgtgccgccacacctagttaatttttttgtagttttaatagagacagggtttcactatgttggccagtctggtctcaaactcctgacctcgtgatctgcccacctcggcctcccaaagtgctgggattataggcatgagccaccatacccagcc
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87618466 4011 - 129401213 I
e canFam3.chr16             17922452 325 -  59632846 I
e calJac3.chr3             190488611 3766 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=569465.000000
s hg38.chr4_KI270925v1_alt    244165 420 +    555799 agttttaccagttcttaaacttaagtcaatgtaattgtacagtatgtactgttgtatgtgcttcttgtctacaacatggcatttgtgagatgcacctgtgctgtagcgtgtagtc--gtttgttcatgctcattgctgc-attgtatcccagcttcaaaaaaagtcgactctgctgttgatggg-------------cacctggtagtttccagttgggagctattgcaaagagtgctgctataaacattttaataatatctatcttttg-gtgatcacatgcacacctttccattgggaatatgcctaggattggaattcttgggtt-cagttatgcccagctttagtaaatac--------------agcagtgcacacccccaggagcagagtaggagagtcccaactgctctacatcctagccaacacttaatactgtctgtattttc
s ponAbe2.chr4_random        3908995 420 -  23176937 agttttacctgttcttaaacttaagtcaatgtaattgtacagtatgtactgttgtatgtgcttcttgtctacaacatggcatttgtgagacgcacctgtgctgcaacgtgtggtc--atttgttcatgctcattgctgc-atagtatcccaacttcaaaaaaagtccactctgctgttgatggg-------------cacctggtagtttccagttgggagctattgcaaagagtgctgctataaacattttactagtatctatcttttg-gtgagcacatgcacacatttccattgggaatatgcctaggattggaattcttgggtt-cagttatgcccagcttcagtaaatac--------------agcagtgcgcacccccaggagcagagtaggagagtcccaactgctccatattctagtcaacacttagtactgtctgtattttc
i ponAbe2.chr4_random      C 0 C 0
s rheMac3.chr5             183627810 415 + 184069350 agttttaccagttattaagcttaagtcaatgtaattgtacggtgtgtactgttacatccgcttcttgtcttcaacatgacatttgtgagatgcgcctgcactgcagcgtgtggtc--atttgttcgtgctcactgctgc-gtggtatcccagctt--agaacagtccactctgctgttgatggg-------------catctggtagtttccagttgggagctattaccaagagtgctgctataaacattttaataa----caacttttg-gtgatcacatgcacacatgtctgttgggaatatgcctaggattggaattcttgggttgcagttatgcccagctttaggaaatac--------------agcagtgcacagccccaggagcagactaggagagtccgaactgttccgcatcctagccaacacttcatattgcctgtattttc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189011487 415 + 189454096 agttttaccagttattaagcttaagtcaatgtaattgtacggtgtgtactgttacatccgcttcttgtcttcgacatgacatttgtgagatgcgcctgcactacagcgtgtggtc--atttgttcgtgctcactgctgt-gtggtatcccagctt--agaacagtccactctgctgttgatggg-------------catctggtagtttccagttgggagctattaccaagagtgctgctataaacattttaataa----catcttttg-gtgatcacatgcacacatgtctgttgggaatatgcctaggattggaattcttgggttgcagttatgcccggctttaggaaatac--------------agcagtgcacagccccaggagcagactaggagagtccgaactgttccgcatcctagccaacacttcatattgcctgtattttc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178436191 415 + 178775436 agttttacCAGTTATTAAGCTTAAGTCAATGTAATTGTACGGTGTGTACTGTTACATCCGCTTCTTGTCTTCAACATGACATTTGTGAGATGCACCTGCACTGCAGCGTGTGGTC--ATTTGTTCGTGCTCATTGCTGT-GTAGTATCCCAGCTT-aaaaaaaGTCCACTCTgctgttgatggg-------------catctggtAGTTTCCAGTTGGGAGCTATTACCAagagtgctgctataaacattttaataa----catcTTTTG-GTGATCACATGCACACATGTCTGTTGGGAATATGCCTAGGATTGGAATTCTTGGGTTGCAGTTATGCCCGGCTTTAGGAAATAC--------------AGCAGTGCACC-CCCCAGGAGCAGAATAGGAGAGTCCTAATTGTTCCGCATCCTAGCCAACACTTCATATTGCCTGTATTTTC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135375753 415 + 135778131 agttttaccagttattacgcttaagtcaatgtaattgtatggtgtgtactgttatatctgcttcttgtcttcaacatgacatttgtgagatgcacctgcactgcagtgtgtggtc--atttgttcgtgctcattgctgc-atagtatcccagctt-aaaaacagtccactctgctgttgatggg-------------catctggtagtttccagttgggagctattacaaagagtgctgctataaacattttaataa----catcttttg-gtgatcacatggacacatttctgttgggaatatg-ctaggattggaattcttgggttgcagttatgcccagctttagtaaatac--------------agcagtacacacccccaggagcagaataggagagtcctaactgttccacatcctaaccaacacttcatattgcctgtattttc
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17922777 437 -  59632846 agttttgcctttgtcttctcttaaataaatgcagtcatgctctatgcattcttattcttgcttcttttgcttcacattatggttacaagactaacccatcatgtaacttgttttctaatttgtgcattctcattgctgtaacagcattccaacttttaaaa---tccattctac-attgataggcattgaaactacccattgagtaatttctaattcagtgttattaaaattggcattgctgtgtacattttaataa----tgcctttttcatgaacacctgtatatatttctgttgggaatatgcccaggactggaattcctgggtcataaatatcttcagttttaa-aaatactgccaagtgattttatccatgtatactctcaggaccagcatatgagagtcc----tgttctatgttctagctgatacttaatattg--tgtcttttc
i canFam3.chr16            I 325 I 546
e mm10.chr8                 87618466 4011 - 129401213 I
e calJac3.chr3             190488611 3766 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=547664.000000
s hg38.chr4_KI270925v1_alt    244585 433 +    555799 catcttagccattctagttggtgtcacatatattttaAAAGAATATAATCAAGAAAAATGGATTATAAGAGATAAAAGTAATATAACTGACCACTGTTGTGGTGGACCTGGACACCCACATTTTAAACAAACTCCAATTGCTTTTGGTGCAGATTGTAATGGTACAACAATTACAGAAGCACTGC-------ACCAGTGGAGGaaaactacagtttttgaaaattggtatgtggtaggcactagattgagtgattttactatgtatttcaaaataacccagattggttaatgttattcgcctccatttacagaggtgcaatgaagattcagaaagtcaggcatttttcccatgttacacatcttgtcaatc--gtagggccagtgattcaaacccagatctTTCCTCCCCTGAGCCTATAACAACCAAGAGGCAATCAATCT
s ponAbe2.chr4_random        3909415 433 -  23176937 catcttagccattctagttggtgtcacatatattttaAAAGAATATAATCAAGAAAAATGGATTATAAGAGATAAAAGTAATATAACTGACCACTGTTGTGGTGGGCGTGGATACCCACATTTTAAACAAACTCCTATTGCTTTTGGTGCAGATTGTAATGGTACAACAATTACAGAAGCACTGC-------ACCAGGGGAGAaaaactacagtttttgaaaattggtatgtggtaggcactagattgagtgattttactatgtatttcaaaataacctaggttggttaatgttattcgcctccatttacagagatgcaatgaagattcagaaagtcaggcatttttcccatgttacacatcttgttaatc--gtagggccagtgattcaaacccagatctttcctcccctgagcctatAACAACCAAGAGGCAATCAATCT
i ponAbe2.chr4_random      C 0 C 0
s rheMac3.chr5             183628225 442 + 184069350 catcttaggcattctagttggCATCACATATATTTTAAAAGAATATAATCAAGAAAAATGAACTATAGAAGACAAGAGTAATATAACTGACCACTGTGGTGGTGAGCCTGGATACCCACATTTTAAACAAACTCCAATTGCTGTTGGTGCAGATTGTAACAGTACAACGATTACAGAAGCACTGCTTCTGTAATCGGGGGAGGagaactacagttgtggaaaactggtatgtggtaggcaccagattgagtgattttactacatatttcaaaataacctagattgcttaatgtcattagcctccatttacagaggtgcaatgaagattcagaaagttaggcatttttcccatgttacacatcttgttaatcttgtagggccaatgattcaaacccaaatctttcctcccctgagcctgtAATAACCAAGAGGCAATAAATCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189011902 441 + 189454096 catcttaggcattctagttggCATCACATATATTTTAAAAGAATACAATCAAGAAAAATGAACTATAGAAGACAAGAGTAATATAACTGACCACTGTGGTGGTGAGCCTGGATACCCACATTTTAAACAAACTCCAATTGCTGTTGGTGCAGATTGTAACAGTACAACGATTACAGAAGCACTGCTTCTGTAATCGGGGGAGGAGAACTACAGTTGTGGAAAACTGGTATGTGGTAGGCACCAGATTGAGTGATTTTACTACATATTTCAAAATAACCTAGA-TGCTTAAtgtcattagcctccatttacagaggtgcaatgaagattcagaaagttaggcatttttcccatgttacacatcttgttaatcttgtagggccaatgattcaaacccaaatctttcctcccctgagcctgtAATAACCAAGAGGCAATAAATCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178436606 442 + 178775436 CATCTTAGGCATTCTAGTTGGcatcacatatattttaaaagaatacaatcAAGAAAAATGAACTATAGGAGATAAGAGTAATATAACTGACCACTGTGGTGGTGAGCCTGGATACTCACATTTTAAACAAACTCCAATTGCTGTTGGTGCAGATTGTAACAGTACAACGATTACAGAAGCACTGCTTCTATAATCGGGGGAGGAGAACTACAGTTTTGGAAAACTGGTATGTGGTAGGCACCAGATTGAGTGATTTTActacacatttcaaaataacctaGATTGCTTAATGTCATTAGCCTCCATTTACAGAGGTGCAATGAAGATTCAGAAAGTTAGGCATTTTTCCCATGTTACACATCTTGTTAATCTTGTAGGGCCAATGATTCAAACCCAAATCTTTCCTCCCCTGAGCCTGTAATAACCAAGAAGCAATAAATCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135376168 435 + 135778131 catcttaggcattctagttggcatcacatatattttaAAAGAATATAATCAAGAAAAATGGACTATAGGAGAAAAGAGTAATATAACTGACCACTGTGGTGGTGAGCCTGGATACCCACATTTTAAACAAACTCCAGTTGCTGTTGGTGCAGATTGTAACAGTACAACGATTACAGAAGCACTGC-------ACCGGGGGAGGAGAACTACAGTTTTGGAAAACTGGTATGTGGTGGGCACCAGATTGAGTGAGTTTACTATGTATTtcaaaataacctagattggttgatgtcattagcctccatttacagaggtgcaatgaagattcagaaagttgggcattttccccatgttacacatcttgttaatcttgtagggccaatggttcaaacccagatctttcctcccctgagcctgtAATAACCAAGAGGCAACAAATCT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87618466 4011 - 129401213 I
e canFam3.chr16             17923214 546 -  59632846 I
e calJac3.chr3             190488611 3766 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=500900.000000
s hg38.chr4_KI270925v1_alt    245018 344 +    555799 CTTCAGTGCAATTGTTTCT-GAGCAGCCATGTCTTGGGTGTGGAATCCCAGATTTGGGTAAAAACTATATCTTTTCAAGATGTGAAATTGTCTCTCCACAAAAAACGGTCATAGCCAATCTTTATGCAGCAATAGCACAATTTTTGTGCAGCTCTAGTGAGTATTGAAAAGTTCGTAAAGGGCCTGGAAACAGGTATTTACTGACATGCCACCTGGTCACGTCCTGGGCCTCGCA-TAGTTTGTTGTTTGAATCAGTGTGC-GGGTGAGTGTGTGTGCCAAAGGGCAGGCTCGTTAAAATTGCAGGTTCATTAGTTATTCAATACTGCCAGACAAGTTACCCCAAAT
s ponAbe2.chr4_random        3909848 344 -  23176937 CTTCAGCGCAATTGTTTCT-GAGCAGCCATGTCTTGGGTGTGGAATCCCAGATTTGGGTAAAAACTATACATTTTCAAGATGTGAAATTGTCTCTCCACAAAAAACAGTCATAGTCAATCTTTATGCAGCAATAGCATAATTTTTGTGTGGCTCTAGTGAGTATTGAAAAGTTCGTAAAGGGCCTGGAAACAGGTGTTTACTGACATGCCACCTGGTCACGTCCTGGGCCTTGCA-TAGTTTGTTGTTTGAATCAGTGTGC-GGGTGAGTGTGTGTGCCAAAGGGCAGGCTTGTTAAAATTGCAGGTTCATTAGTTATTCAATACTGCCAGACAAGGTACCCCAAAT
i ponAbe2.chr4_random      C 0 C 0
s rheMac3.chr5             183628667 343 + 184069350 CTTCAGTCCAATTGTTTCT-AAGCAGCCATGTCTTGAGTGTGGAATCCCAGATTTGGGTAAAAACTATATCTTTTCAAGATGTGAAACTCTCTTTCAACAAAAAACAGTCATAGCCAATATTTATGCAGCAACAGCACAATTTTTGTGCAGCTTCAGTGAGTATTGAAAAGTTCGTAAACGGCCTGGAAACAGG-GTTTACTGACACGCCACCTGGTCGTGTCCTAGGCCTCGCA-TAGTTTGTTATTTGAATCAGTGTGC-GGGTGAGTGTGTGTGCCAAAGGGCAGGCTTGTTAAAATTGTAGGTTTGTTAGTTATCCAACACTTCCCAACAAGGCACCCCAAAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189012343 342 + 189454096 CTTCAGTCCAATTGTTTCT-AAGCAGCCATGTCTTGAGTGTGGAATCCCAGATTTGGGTAAAAACTGTATCTTTTCAAGATGTGAAACTCTCTTTCAAC-AAAAACAGTCATAGCCAATATTTATGCAGCAACAGCACAATTTTTGTGCAGCTTTAGTGAGTATTGAAAAGTTCGTAAACGGCCTGGAAACAGG-GTTTACTGACACGCCACCTGGTCGTGTCCTAGGCCTCGCA-TAGTTTGTTATTTGAATCAGTGTGC-GGGTGAGTGTGTGTGCCAAAGGGCAGGCTTGTTAAAATTGTAGGTTTGTTAGTTATCCAACACTTCCCGACAAGGCACCCCGAAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178437048 344 + 178775436 CTTCAGTCCAATTGTTTCT-AAGCAGCCATGTCTTGAGTGTGGAATCCCAGATTTGGGTAAAAACTATATCTTTTCAAGATGTGAAACTCTCTTTCAACAAAAAACAGTCATAGCCAATATTTATGCAGCAACAGCACAATTTTTGTGCAGCTTCAGTGAGTATTGAAAAGTTCGTAAACAGCCTGGAAACAGGCGTTTACTGACATGCCACCTGGTCGTGTCCTAGGCCTCGCA-TAGTTTGTTATTTGAATCAGTGTGC-GGGTGAGTGTGTATGCCAAAGGGCAGGCTTGTTAAAATTGTAGGTTCGTTAGTTATCCAACACTTCCCGACAAGGCACCCCGAAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135376603 342 + 135778131 CTTCAGCCCAGTTGTTTCT-AAGCAGCCATGTCTTGAGTGTGGAATCCCAGATTTGGGTAAAAACTATATCTTTTCAAGATGTGAAACTCTCTTTCAACAAAAAACAGTCATAGCCAATCTTCATGCAGCAACAGCACAATTTTTGTGCAGCTTTAGTGAGTATTGAAAAGTTCATAAACAGCCTGGAAACGG--GTTTACTGACATCCCACCTGGTCGTGTCCTAGGCCTCGCA-CAGTTTGTTATTTGAATCAGTGTGC-TGGTGAGTGTGTGTGCCAAAGGGCAGGCTTGTTAAAATTGTAGGTTCGTTAGTTATCCAACACTTCCCGACAAGGCACCCCGAAT
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17923760 338 -  59632846 CTGTGCTTTAATTCTTTCTAAAGCTACAAAGCTTTAAATGTAAGACCTAATGCCTGGGTAAACACTTTCTATTTTCCAGATATTAAATTCTCTCTGAACTGAAAGCAGTAGTGGTCAAACTTTATTTTGTAAG-----AATTTCTGTCCAATTATATTAATTATTGAAAAATTCTTCAAAGATGtagaaagaggtatttaatgacataccagttgat----tcttagaacttaaatttgtttattatttgtatcagtgtttagggtgagtacacatgccagagggcaggcttatcaaaAGTATAGGTTTATCATTTACCTAATACTGCCTAACAAAGCACCTCAAAT
i canFam3.chr16            I 546 C 0
e mm10.chr8                 87618466 4011 - 129401213 I
e calJac3.chr3             190488611 3766 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=168909.000000
s hg38.chr4_KI270925v1_alt    245362 136 +    555799 AGGACTGACTTACATTTCTCACAGCTCTCTGGGTGGGCCAAGAGGTGCTTTTGCTGATCTTGCATGGGTTcagctgtgttggattaagctagagggttggctgggcctgagctcagctggctgaaccgcaagaact
s ponAbe2.chr4_random        3910192 136 -  23176937 CGGACTGACTGAAATTTCTCACAGCTCTCTGGGTGGGCCAACAGGTGCTTTTGCTGATCTTGCATGGGTTCAACTGTGTTGGATTAggctagagggttggctgggcctgagctcagctgggtgaaccagaagagct
i ponAbe2.chr4_random      C 0 C 0
s rheMac3.chr5             183629010 136 + 184069350 GGGACTGACTTGAATTTCTCACAGCTCTCTGGGTGGGCTGAGAAGTGCTTTTGCTGATTGTGCATGAGTTCAGCTGCGTCGGATTGggctggagggctggctgggcctgagctcagctgggtgaactggaagagct
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189012685 136 + 189454096 GGGACTGACTTGAATTTCTCACAGCTCTCTGGGTGGGCCGAGAGGTGCTTTTGCTGATCGTGCATGAGTTCAGCTGCATCGGATTGggctggagggctggctgggcctgagctcagctgggtgaactggaagagct
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178437392 135 + 178775436 GGGACTGACTTGAATTTCTCACAGCTCTCTGGGTGGGCCGAGAGGTGCTTTTGCTGATCGTGCATGAGTTCAGCTGCGTCGGATTgggctggagggctgga-gggCCTGAGCTCAGCTGGGTGAACTGGAAGAGCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135376945 136 + 135778131 GGGACTGACTTGGATTTCTCACAGCTCTCTGGGTGGGCCGAGAGGTGCTTTTGCTGATCGTGCATGAGTTCAGCTGCGTCGGATTGggctggagggctggctgggcctgagctcagctgggtgaactggaagagct
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87618466 4011 - 129401213 I
e canFam3.chr16             17924098   0 -  59632846 C
e calJac3.chr3             190488611 3766 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=407120.000000
s hg38.chr4_KI270925v1_alt    245498 270 +    555799 cctccttttcaggtcgtctttcaatctcaaagaggatca-ttgacttcctctcatgaaggcagcgacgtcccaggaaagtgaaggcagaagaggcaagacctctt-gggggt------ctttcactgcattctgttagtcaacgcgaatcacaagttcagcccagagtgaaggggtggagaaatagatcatgccct---gataggaaagctacaaaatagcatggccatgcttttcagtcagccacaGTGGATGAAAACTTGGATATGCCAGCACAAAGGA-
s ponAbe2.chr4_random        3910328 271 -  23176937 cctcctttccaggtaatctttcaatctcaaagaggatca-ttgacttcctctcgtgaaggcagcaatgtcccaggaaagtgaaggcagaagaggcaaggcctctt-gggggt-----tctttcaccacattctgttagtcaacgcgaatcacaagttgggcccagagtgaaggcgtggagaaacagatcatgccct---gataggaaagctacaaaatagcatggcCATGCTTTTCAGTCAGCCACGGTGGATGAAAACCTGGATATGCTAGCACAAAGGA-
i ponAbe2.chr4_random      C 0 C 0
s rheMac3.chr5             183629146 272 + 184069350 cctcctttccaggtaatctttcaatctcaaaagcgatcatttggcttcctctcatgaaggcagcaatgtcccaggaaagtgaaggcagaagatgcaagacctctcaggggat------cttccactgcattctgttagtcaaagcgaatcacaagttcggcccagagtgaaggcgtggagaaatagatcacgccct---gataggaaagctacaaaatagcgtggccatgctttTCGGTCAGCCACAGTGGATGAAAACCTGGATATGCTAGCACAAAGGA-
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189012821 272 + 189454096 cctcctttccaggtaatctttcaatctcaaaagcgatcatttggcttcctctcatgaaggcagcaatgtcccaggaaagtgaaggcagaagatgcaagacctctcggggggt------cttccactgtattctgttagtcaaagcgaatcacaagttcggcccagagtgaaggcgtggagaaatagatcacgccct---gataggaaagctacaaaatAGCGTGTCCATGCTTTTCGGTCAGCCACAGTGGATGAAAACCTGGATATGCTAGCACAAAGGA-
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178437527 272 + 178775436 CCTCCTTTCCAGGTAATCTTTCAATCTCAAAAGCGATCATTTGGCTTCCTCTCATGAAGGCAGCAATGTCCCAGGAAAGTGAAGGCAGAAGATGCAAGACCTCTCAGGGGGT------CTTCCACTGTATTCTGTTAGTCAAAGCGAATCACAAGTTCGGCCCAGAGTGAAGGCGTGGAGAAATAGATCACGCCCT---GATAGGAAAGCTACAAAATAGCGTGGCCATGCTTTTCGGTCAGCCACAGTGGATGAAAACCTGGATGTGCTAGCACAAAGGA-
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135377081 271 + 135778131 cctcctttccaggaagtctttcaatctcaaaaacgatcatttggcttcccctcatgaaggcagcgatgtcccaggaaagtgaaggcagaagatgcaagacctctc-gggggt------cttccactgcgttctgtgagtcaaagcgaatcacaagttcggcccagagtgaaggcgtggagaaacagatcacgccct---gacaggaaagctacaaaatAGCGTGGCCATGCTTTTCGGTCAGCCACAGTGGATGAAAATCTAGATATGCCAGCACAAAGGA-
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17924098 280 -  59632846 CTTTCTctccatatagtcttccatcctccagaaggatagattggcttcttcacatagaagcagtcgtgttccaagaaagagaaagtgaaaattgcaaggtctctt-gaggcttaggctcttctaccacattctatcagtcaaggccagtcacaagatcagcccagggtcaaatggtgt-gaaataaatgacaccttttaaatccgaaagccacaaaatcacatGGTCATGTTTTTCAGTCTACCGCTGAGGATAAAAGTCTGAATATGCTAGCACAAAATGA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87618466 4011 - 129401213 I
e calJac3.chr3             190488611 3766 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=1244078.000000
s hg38.chr4_KI270925v1_alt    245768 854 +    555799  
s ponAbe2.chr4_random        3910599 853 -  23176937  
i ponAbe2.chr4_random      C 0 C 0
s rheMac3.chr5             183629418 866 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189013093 866 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178437799 865 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135377352 867 + 135778131  
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87622477 841 - 129401213  
i mm10.chr8                I 4011 C 0
s canFam3.chr16             17924378 842 -  59632846  
i canFam3.chr16            C 0 I 208
e calJac3.chr3             190488611 3766 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=62502.000000
s hg38.chr4_KI270925v1_alt    246622 42 +    555799 GAAAGTACTTGGTTTAGATGGTGCCTAATGAAACAAGAGGAT
s ponAbe2.chr4_random        3911452 42 -  23176937 GAAAGTACTTGGTTTAGTTGGTGCTTAATGAAACAAGAGGTT
i ponAbe2.chr4_random      C 0 C 0
s rheMac3.chr5             183630284 42 + 184069350 AGAAGTACTTGGTTTAGATGGTGCCTAATGAAACAAGAGGAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189013959 42 + 189454096 AGAAGTACTTGGTTTAGATGGTGCCTAATGAAACAAGAGGAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178438664 42 + 178775436 AGAAGTACTTGGTTTAGATGGTGCCTAATGAAACAAGAGGAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135378219 42 + 135778131 AGAAGTACTTGGTTTAGATGGTGCCTGAGGAAACAAGAGGAT
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87623318 37 - 129401213 AGACACACTTTGT-----TGATGTCTAATGAAACAAGGGGAC
i mm10.chr8                C 0 C 0
e canFam3.chr16             17925220 208 -  59632846 I
e calJac3.chr3             190488611 3766 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=551925.000000
s hg38.chr4_KI270925v1_alt    246664 345 +    555799 GTAATGATGGTGGATATTGAAGTTCATAAGTTGAGGTTAATTTGACCCAAATGGAAGCTAATGTGCTGTT-GTGGAGGATAGTACAGAGGAAGAATTTAGAAAGATAATCTCAGTGCTATGTGCA------------------------------GAAGCCAC-------TACTGGCCCCATTTCTAGGGCACTTCGATGAGAGAGTAAGTAAATGGAAATA--TCTGAACATAAGAAAGAAGAAGCAACAG-ACTTGAAGACAAGCCAGCCA-TAAGTGGAAAAGTGCAGAAAAAGGATAAAAATGACCAGAGTTTGCATTTTATGTCACGACTTACACATATGAAAAAGCTGGGAAA-AG-GACAG---G--GGAACACAATCCTGCTTTTA----
s ponAbe2.chr4_random        3911494 345 -  23176937 GTAATGATGGTGGATATTAAAGTTCGTAAGTTGAGGTTAATTTGACCCAAATGGTAGCTAATGTGCTGTT-GTGGAGGATAGTACAGAGGAAGAATTTAGAAAGATAACCTCAGTGCTATGTGCA------------------------------GAATCCAC-------TACTGGCCTCATTTCTAGGGCACTTTGATGAGAGAGTAAGTAAATGGAAATA--TCTGAACATAAGAAAGAAAAAGCAACAG-ACTTGAAGACAAGCCAGACA-TAAGTGGAAAAGTGCAGAAAAAGGATAAAAATGACCAGAGTTTGCATTTTATGTCACGACTTACACATATGAAAAAGCTGGGAAA-AG-GATAG---G--GGAACACAATTCTGCTTTTA----
i ponAbe2.chr4_random      C 0 C 0
s rheMac3.chr5             183630326 346 + 184069350 GTGATGATGGTGGACACTGAAGTTCATACGTTGAGGTTAATTTGAGCCAAATGGAAGCTAAGGTGCTGCT-GTGGAGAACAGCACAGAGGACGAATTGAGAAAGACAACCTCGGTGCCGTGTGCA------------------------------GAATCCAC-------CGACGGCCCCATTCCCAGGACACTTCGATGAGGGAGTAAGTAAATGGAAATA--TCTCAATGTAAGAAAGAAGAAGCAACAG-ACTTGAAGACAAGCCAGACGTTAAGTGGAAAAGTGCAGAAAAAGGATGAAAATGCCCAGAGTTTGCATTTTACATCACTACTTACACATATGAAAAAGCTGGGGAA-AG-GACAG---A--GGAACACAGTCCTGCCTTTA----
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189014001 345 + 189454096 GTGATGATGGTGGACACTGAAGTTCATACGTTGAGGTTAATTTGAGCCAAATGGAAGCTAAGGTGCTGCT-GTGGAGAACAGCACAGAGGAAGAATTGAGAAAGACAACCTCGGTGCCATGTGCA------------------------------GAATCCAC-------CGACGGCCCCATTCCCAGGACACTTCGATGAGGGAGTAAGTAAATGGAAATA--TCTCAATGTAAGAAAGAAGAAGCAACAG-ACTTGAAGACAAGCCAGACG-TAAGTGGAAAAGTGCAGAAAAAGGATGAAAATGTCCAGAGTTTGCATTTTACATCACTACTTACACATATGAAAAAGCTGGGGAA-AG-GACAG---A--GGAACACAGTCCTGCCTTTA----
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178438706 345 + 178775436 GCGATGATGGTGGACACTGAAGTTCATACGTTGAGGTTAATTTGAGCCAAATGGAAGCTAAGGTGCTGCT-GTGGAGAACAGCACAGAGGAAGAATTGAGAAAGACAACCTCGGTGCCGTGTGCA------------------------------GAATCCAC-------CGACGGCCCCATTCCCAGGACACTTCGATGAGGGAGTAAGTAAATGGAAATA--TCTGAACGTAAGAAAGAAGAAGCAACAG-ACTTGAAGACAAGCCAGACG-TAAGTGGAAAAGTGCAGAAAAAGGATGAAAATGCCCAGAGTCTGCATTTTACATCACTACTTACACATATGAAAAAGCTGGGGAA-AG-GACAG---A--GGAACACAGTCCTGCCTTTA----
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135378261 345 + 135778131 GTGATGATGGTGGACACTGAAGTTCATACGTTGAGGTTAATTTGAGCCAAATGGAAGCTAAGGTGCTGCT-GTGGAGAACAGCACAGAGGAAGAATTGAGAAAGACAACCTCGGTGCCGTGTGCA------------------------------GAATCCAC-------CGATGGCCCCATTCCCAGGACACTTCGATGAGGGAGTAAGTAAATGGAAATA--TCTGAACGTAAGAAAGAAGAAGCAACAG-ACTTGAAGACAAGCCAGACA-TAAGTGGAAAAGTGCAGAAAAAGGATGAAAATGCCCAGAGTTTGCATTTTACATCACTACTTACACACATGAAAAAGCTGGGGAA-AG-GACAG---A--GGAACACAGTCCTGCCTTTA----
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87623355 368 - 129401213 ATAGAGACAGTGACTCCTAAG--TCATAAGCTGAGGTTAATTTAATCCAAATGGGAATTAATGTGCTGTG-ATGGAAAGCAG--CAGAAGGAGAAGTTAACA----AACTCCCTTGCAATACACAAAAGGAGATTAGATGAAGGGAAGGAGAGAGAAATCCAC-------TTATTGCCCCATTTCCAATATATTTAGTTGAGGGACTAAGTAAGTGGAAATATGTCTGAACATAGG---GAGGAAGCGACAG-GACTTGATAAAAGCTGCACA-CATGTGGCAACGGGAAGAAACTAGATAAAAACGACCGCAGTTTGCACTTC-TTTCACTACCAGTAATCACAAAGATGCTGGTAAA-AGTGACAA---AGTGGAACAACGTTCTATTTTCA----
i mm10.chr8                C 0 I 200
s canFam3.chr16             17925428 384 -  59632846 GTAGTCATGGTGAACCCTCAAGTTCATTAAATGGAGCAAATTTGATCTAAATGGAAATGAATGTTTAGTGAATTGAGGACAATACAGGAGAAGAACAGAAGATGAT--TCTTGCCTCTATATGAA-GAACAGACTAGAACAGGGGAACCTG----AAACCCACTTCCAAGTGATTGCCCCACTTCCAGGACACTTGGA-AAGGGAATCAGTGAAAAGAAATATACCAAAAAATAAGAAGGAAGAAACAATAGAAATTAATGACAAACTGCACC-TAAGTGACAAATAGGAAAAATAAGAAAAAAATGGCTAAAATTTGCATTTGATGTCACTA--GATAATCATGAAAAAGTTGGGAAAGAG-GATAGTGTA--GGAACAAAGTTCTGCTTTTGGTGA
i canFam3.chr16            I 208 C 0
e calJac3.chr3             190488611 3766 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=21390.000000
s hg38.chr4_KI270925v1_alt    247009 16 +    555799 TGATGAAGGGGAGA--TG
s ponAbe2.chr4_random        3911839 16 -  23176937 TGATGAAGTGGAGA--Tg
i ponAbe2.chr4_random      C 0 C 0
s rheMac3.chr5             183630672 16 + 184069350 TGATGAAGTGGCGA--TG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189014346 16 + 189454096 TGATGAAGTGGCGA--TG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178439051 18 + 178775436 TGATGAAGTGGAGAGGTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135378606 16 + 135778131 TGATGAAGTGGCGA--TG
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17925812 16 -  59632846 TAAGTAAGTGAAGA--TG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87623723 200 - 129401213 I
e calJac3.chr3             190488611 3766 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=375706.000000
s hg38.chr4_KI270925v1_alt    247025 299 +    555799 tgtgtagcagatgcacct-gtggaaatcacttaagcaaagcctgagaatgtacctgcaccagatctgtgtaaactgcatgcttttgacaaatgacagtgctcctcctgtccagcctgccaccgctcaatggccctgtatgaaagtttccttaataaaccctgtgtcctgttcactggctccaggtcttttcttcagcctcttgaacctgttgccatccccaccaaagccaataaggatccagcacaacTGGTGAGGAagccagtaagtcagagcaaaccccgtgaatgccaagatgatag
s ponAbe2.chr4_random        3911855 299 -  23176937 tgtgtagcagatgcacct-gtggaaatcacttaagcaaaccctgagaatgtacctgcaccagatctgtgtaaattgcatgcttttgacaaatgacagtgctcctcctgtccagcccgccaccgctcaacggccctgtatgaaagtttctgtaataaaccctgtgtcctgttcactggctccaggtcttttcttcagcctcttgaacctggtgccatccctaccgaagccaataaggatccagcacaacTGGTGAGGAagccagtaagtcagagcaaaccctgtgaatgccaagatgatgg
i ponAbe2.chr4_random      C 0 C 0
s rheMac3.chr5             183630688 298 + 184069350 TGTGTAACAGGTGCAGTTGGTGGAAATCATTT-AGCAAACCCTGAGAATGCACCTGCACCAGATctatgtgaactgcacccttttcacaaatgacagcgcttctcctg-tcagcctgcccccactcaacggccctgtacgaaagtttccttaataagccctgtgtcctgttcactggctgcaggtctcttcttcagcctcttgaacctggtgccatccctactgaagccaagaaggatccagcacagcTGGTGAGGAagccagtaagtcagagcaaaccccgtgaatgccaagatgatgg
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189014362 298 + 189454096 TGTGTAGCAGGTGCAGCTGGTGGAAATCATTT-AGCAAACCCTGAGAATGCACCTGCACCAGATctatgtgaactgcacccttttcacaaatgacagcgcttctcctg-ccagcctgcccccactcaacggccctgtacgaaagttcccttaataagccctgtgtcctgttcactggctgcaggtctcttcttcagcctcttgaacctggtgccatccctactgaagccaagaaggatccagcacagcTGGTGAGGAagccagtaagtcagagcaaaccccgtgaatgccaagatgatgg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178439069 299 + 178775436 TGTGTGGCAGGTGCAGCTGGTGGAAATCATTT-AGCAAACCCTGAGAATGCACCTGCACCAGATCTATGTGAACTGCACCCTTTTCACAAATGACAGCGCTTCTCCTGTCCAGCCTGCCCCCACTCAACGGCCCTGTACGAAAGTTTTCTTAATAAGCCCTGTGTCCTGTTCACTGGCTGCAggtctcttcttcagcctcttgaacctggtgccatcCCTACTGAAGCCAAGAAGGATCCAGCACAGCTGGTGAGGAAGCCAGTAAGTCAGAGCAAACCCCGTGAATGCCAAGATGATGG
i papAnu2.chr5             C 0 I 10
s chlSab2.chr7             135378622 299 + 135778131 TGTGTGGCAGGTGCAGCTGGTGGAAATCATTT-AGCAAACCCTGAGAATGCACCTGCACCAGATctgtgtggacggcacccttttcacaaatgacagcgctcctcctgtccggcctgcccccactcaacggccctgcacgaaagtttccttaataagccctgtgtcctgttcactggctgcaggtctcttcttcagcctcttgaacctgctgccatccctaccgaagccaagaaggatccagcacagcTGGTGAGGAagccagtaagtcagagcaaaccccgtgaatgccaagatgatgg
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87623723 200 - 129401213 I
e canFam3.chr16             17925828   0 -  59632846 C
e calJac3.chr3             190488611 3766 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=7530.000000
s hg38.chr4_KI270925v1_alt    247324 11 +    555799 catcagggaag
s ponAbe2.chr4_random        3912154 11 -  23176937 gatcagggaag
i ponAbe2.chr4_random      C 0 C 0
s rheMac3.chr5             183630986 11 + 184069350 gatcagggaag
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189014660 11 + 189454096 gatcagggaag
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135378921 10 + 135778131 gatcagggaa-
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87623723 200 - 129401213 I
e canFam3.chr16             17925828  0 -  59632846 C
e calJac3.chr3             190488611 3766 - 190850796 I
e papAnu2.chr5             178439368 10 + 178775436 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=53616.000000
s hg38.chr4_KI270925v1_alt    247335 44 +    555799 gggagatccgtgggggagaccctgggctggctgtccatgcctat
s ponAbe2.chr4_random        3912165 44 -  23176937 gggagatccacgggggagatcctgggccggctgtccatgcctat
i ponAbe2.chr4_random      C 0 C 0
s rheMac3.chr5             183630997 44 + 184069350 gggacatccatgggggaaattctgagccggctgtccatgtctat
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189014671 44 + 189454096 gggacatccatgggggaaattctgagccggctgtccatgtcaat
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178439378 44 + 178775436 GGGACATCCATGGGGGAAACTCTGAGCCGGCTGTCCATGTCTAT
i papAnu2.chr5             I 10 T 54
s chlSab2.chr7             135378931 44 + 135778131 gggacatccatgggggaaactctgagccggctgtccatgtctat
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87623723 200 - 129401213 I
e canFam3.chr16             17925828  0 -  59632846 C
e calJac3.chr3             190488611 3766 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=79905.000000
s hg38.chr4_KI270925v1_alt    247379 66 +    555799 gATCAGGGAAGGGGAGATCCATGGGGGAGACCCTGGGCCGGCTGTCCATGCCTATGATCAGGGAAG
s ponAbe2.chr4_random        3912209 66 -  23176937 gATCAGGGAAGGGGAGATCCACAGGGGAGACCCTGGGCCGGCTGTCCACGCCTATGATCAGGGAAG
i ponAbe2.chr4_random      C 0 C 0
s rheMac3.chr5             183631041 65 + 184069350 gATCAGGGAA-GGGAGATCCACGGGGGAGACCCTGGGCCTGCTGTCCATGTCTATGATCAGGGAAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189014715 66 + 189454096 gATCAGGGAAGGGGACATCCACGGGAGAGACCCTGGGCCTGCTGTCCATGTCTATGATCAGGGAAG
i macFas5.chr5             C 0 T 55
s papAnu2.chr5             178439368 65 + 178775436 GATCAGGGAA-GGGACATCCATGGGGGAAACTCTGAGCCGGCTGTCCATGTCTATGATCAGGGAAG
i papAnu2.chr5             T 54 C 0
s chlSab2.chr7             135378975 65 + 135778131 gGTCAGGGAA-GGGAGATCCACGGGGGAGACCCTGGGCCGGCTGTCCATGTCTATGGTCAGGGAAG
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87623723 200 - 129401213 I
e canFam3.chr16             17925828  0 -  59632846 C
e calJac3.chr3             190488611 3766 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=63454.000000
s hg38.chr4_KI270925v1_alt    247445 54 +    555799 GTGAGATCCGCGGGGGAGACACTGGGCTGGCTGTCCATGCCTATGATCAGGGAA
s ponAbe2.chr4_random        3912275 54 -  23176937 GGGACATCCATGGGGGAGACCCTGGGCTAGCTGTCCATGTCTATGATCAGGGAA
i ponAbe2.chr4_random      C 0 C 0
s rheMac3.chr5             183631106 53 + 184069350 -GGACATCCACGGGGGAGACCCCGGGCCGGCTGTCCATGTCtatgatcagggaa
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189014726 54 + 189454096 GGGACATCCACGGGAGAGACCCTGGGCCTGCTGTCCATGTCTATGATCAGGGAA
i macFas5.chr5             T 55 T 55
s papAnu2.chr5             178439433 53 + 178775436 -GGAGATCCGCGGGGGAGACCCTGGGCCTGCTGTCCATGTCTATGATCAGGGAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135379040 53 + 135778131 -GGACATCCACGGGGGAGACCCTGGGCCGGCTGTCCATGTCTTAGGTCAGGGAA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87623723 200 - 129401213 I
e canFam3.chr16             17925828  0 -  59632846 C
e calJac3.chr3             190488611 3766 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=12821.000000
s hg38.chr4_KI270925v1_alt    247499 12 +    555799 TGGGAGATCCAT
s ponAbe2.chr4_random        3912329 12 -  23176937 GGGGAGATCCAT
i ponAbe2.chr4_random      C 0 T 55
s rheMac3.chr5             183631159 11 + 184069350 -gggacatccac
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189014725 12 + 189454096 GGGGACATCCAC
i macFas5.chr5             T 55 C 0
s papAnu2.chr5             178439486 11 + 178775436 -GGGACATCCAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135379093 12 + 135778131 GGGGACATCCAC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87623723 200 - 129401213 I
e canFam3.chr16             17925828  0 -  59632846 C
e calJac3.chr3             190488611 3766 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=42568.000000
s hg38.chr4_KI270925v1_alt    247511 34 +    555799 GGGGAAGACCCTGGGCCGGCTGTCCATGCCTATG
s ponAbe2.chr4_random        3912286 34 -  23176937 GGGGGAGACCCTGGGCTAGCTGTCCATGTCTATG
i ponAbe2.chr4_random      T 55 C 0
s rheMac3.chr5             183631170 34 + 184069350 aggggagaccctgggccggctgtccattcctatg
i rheMac3.chr5             C 0 I 728
s macFas5.chr5             189014737 34 + 189454096 GGGAGAGACCCTGGGCCTGCTGTCCATGTCTATG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178439497 34 + 178775436 GGGGGAGACCCTGGGCCAGCTGTCCATGTCTATG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135379105 34 + 135778131 GGGGGAGACCCTGGGCCTGCTGTCCATGTCTATG
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87623723 200 - 129401213 I
e canFam3.chr16             17925828  0 -  59632846 C
e calJac3.chr3             190488611 3766 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=7206.000000
s hg38.chr4_KI270925v1_alt    247545 9 +    555799 ATCAGGGAA
s ponAbe2.chr4_random        3912320 9 -  23176937 ATCAGGGAA
i ponAbe2.chr4_random      C 0 C 0
s macFas5.chr5             189014771 9 + 189454096 ATCAGGGAA
i macFas5.chr5             C 0 I 54
s papAnu2.chr5             178439531 9 + 178775436 ATCATGGAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135379139 9 + 135778131 GTCAGGGAA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87623723 200 - 129401213 I
e canFam3.chr16             17925828 0 -  59632846 C
e calJac3.chr3             190488611 3766 - 190850796 I
e rheMac3.chr5             183631204 728 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=207.000000
s hg38.chr4_KI270925v1_alt    247554 1 +    555799 G
s ponAbe2.chr4_random        3912329 1 -  23176937 G
i ponAbe2.chr4_random      C 0 C 0
s papAnu2.chr5             178439540 1 + 178775436 A
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135379148 1 + 135778131 G
i chlSab2.chr7             C 0 I 53
e mm10.chr8                 87623723 200 - 129401213 I
e canFam3.chr16             17925828 0 -  59632846 C
e calJac3.chr3             190488611 3766 - 190850796 I
e macFas5.chr5             189014780 54 + 189454096 I
e rheMac3.chr5             183631204 728 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=8007.000000
s hg38.chr4_KI270925v1_alt    247555 11 +    555799 GGGAGATCCGT
s ponAbe2.chr4_random        3912330 11 -  23176937 GGGAGATCCAT
i ponAbe2.chr4_random      C 0 T 55
s macFas5.chr5             189014834 11 + 189454096 gggacatccac
i macFas5.chr5             I 54 C 0
s papAnu2.chr5             178439541 11 + 178775436 GGGACATCCAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135379202 11 + 135778131 GGGACATCCAC
i chlSab2.chr7             I 53 C 0
e mm10.chr8                 87623723 200 - 129401213 I
e canFam3.chr16             17925828  0 -  59632846 C
e calJac3.chr3             190488611 3766 - 190850796 I
e rheMac3.chr5             183631204 728 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=27329.000000
s hg38.chr4_KI270925v1_alt    247566 34 +    555799 GGGGGAGACCCTGGGCTGGCTGTCCATGCCTGTG
s ponAbe2.chr4_random        3912286 34 -  23176937 GGGGGAGACCCTGGGCTAGCTGTCCATGTCTATG
i ponAbe2.chr4_random      T 55 C 0
s macFas5.chr5             189014845 34 + 189454096 aggggagaccctgggccggtcgtccattcctatg
i macFas5.chr5             C 0 T 98
s papAnu2.chr5             178439552 34 + 178775436 GGGGGAGACCCCGGGCCAGCTGTCCATGTCTATG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135379213 34 + 135778131 GGGGGAGACCCTGGGCCGGCTGTCCATGTCTATG
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87623723 200 - 129401213 I
e canFam3.chr16             17925828  0 -  59632846 C
e calJac3.chr3             190488611 3766 - 190850796 I
e rheMac3.chr5             183631204 728 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=4764.000000
s hg38.chr4_KI270925v1_alt    247600 9 +    555799 ATCAGGGAA
s ponAbe2.chr4_random        3912320 9 -  23176937 ATCAGGGAA
i ponAbe2.chr4_random      C 0 I 12
s papAnu2.chr5             178439586 9 + 178775436 ATCAGGGAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135379247 9 + 135778131 GTCAGGGAA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87623723 200 - 129401213 I
e canFam3.chr16             17925828 0 -  59632846 C
e calJac3.chr3             190488611 3766 - 190850796 I
e macFas5.chr5             189014879 98 + 189454096 T
e rheMac3.chr5             183631204 728 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=-128.000000
s hg38.chr4_KI270925v1_alt    247609 1 +    555799 T
s papAnu2.chr5             178439595 1 + 178775436 G
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135379256 1 + 135778131 G
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87623723 200 - 129401213 I
e canFam3.chr16             17925828 0 -  59632846 C
e calJac3.chr3             190488611 3766 - 190850796 I
e macFas5.chr5             189014879 98 + 189454096 T
e rheMac3.chr5             183631204 728 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4_random        3912329 12 -  23176937 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=11089.000000
s hg38.chr4_KI270925v1_alt    247610 23 +    555799 GGAGATCCACGGAGGAAACCCTG
s macFas5.chr5             189014781 23 + 189454096 GGACATCCACGGGGGAGACCCCG
i macFas5.chr5             T 98 C 0
s papAnu2.chr5             178439596 23 + 178775436 GGACATCCACGGGGGAGATCCCG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135379257 23 + 135778131 GGACATCCACGGGGGAGACCCTG
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87623723 200 - 129401213 I
e canFam3.chr16             17925828  0 -  59632846 C
e calJac3.chr3             190488611 3766 - 190850796 I
e rheMac3.chr5             183631204 728 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4_random        3912329 12 -  23176937 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=452265.000000
s hg38.chr4_KI270925v1_alt    247633 632 +    555799  
s ponAbe2.chr4_random        3912341 606 -  23176937  
i ponAbe2.chr4_random      I 12 n 12
s macFas5.chr5             189014804 626 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178439619 551 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135379280 627 + 135778131  
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87623723 200 - 129401213 I
e canFam3.chr16             17925828   0 -  59632846 C
e calJac3.chr3             190488611 3766 - 190850796 I
e rheMac3.chr5             183631204 728 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=30589.000000
s hg38.chr4_KI270925v1_alt    248265 68 +    555799 cccacaaaactctcccctgcctgaaagatggcagcacg--acagtgcaaggcagcaccactgtggaactg
s macFas5.chr5             189015430 69 + 189454096 cccacaacactct-ccctgtctgaaagatggcagcacagcacagcgcagggcggcaccaccgtggaactg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178440170 61 + 178775436 --------ACTCT-CCCTGTCTGAAAGATGGCAGCACAGCACAGCGCAGGGCGGCACCACCGTGGAACTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135379907 69 + 135778131 cccacaacactct-ccctgtctgaaagatggcagcacagcgcagcgcagggcggcaccaccgtggaactg
i chlSab2.chr7             C 0 I 281
e mm10.chr8                 87623723 200 - 129401213 I
e canFam3.chr16             17925828  0 -  59632846 C
e calJac3.chr3             190488611 3766 - 190850796 I
e rheMac3.chr5             183631204 728 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4_random        3912947 12 -  23176937 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=683.000000
s hg38.chr4_KI270925v1_alt    248333 22 +    555799 TCTCCACTG----------CCTGAAAGATGGC---
s macFas5.chr5             189015499 35 + 189454096 gcagagctgggaaacagtttcaggaggaaggggag
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178440231 35 + 178775436 GCGGAGCTAGgaaatagtttcaggaggaaggggag
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87623723 200 - 129401213 I
e canFam3.chr16             17925828  0 -  59632846 C
e calJac3.chr3             190488611 3766 - 190850796 I
e chlSab2.chr7             135379976 281 + 135778131 I
e rheMac3.chr5             183631204 728 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4_random        3912947 12 -  23176937 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=14735.000000
s hg38.chr4_KI270925v1_alt    248355 38 +    555799 AGCACAACACAGCACAGGGCGGCACCACTGTGGAACTG
s rheMac3.chr5             183631932 38 + 184069350 AGCACAGCACAGCGCCGGGCGGCACCACTGTGGAACTG
i rheMac3.chr5             I 728 I 443
s macFas5.chr5             189015534 26 + 189454096 agcacagcacagcgcagggcggcacc------------
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178440266 38 + 178775436 agcaCAGCACAGCGCAGGGCGGCACCACCGTGGAACTG
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87623723 200 - 129401213 I
e canFam3.chr16             17925828  0 -  59632846 C
e calJac3.chr3             190488611 3766 - 190850796 I
e chlSab2.chr7             135379976 281 + 135778131 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4_random        3912947 12 -  23176937 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=53121.000000
s hg38.chr4_KI270925v1_alt    248393 289 +    555799 -------------TCTCccctgcctgaaagatggcagcatgacacagcgcagggcagcaccactgtggaactggtggagctgggaaatagtttcaggaggaggggggagagctgatcacgggtggcttctacctctaggggacatgaggtgctgtatctctgcatttgaggtgagtggaaaggtgtccaccacaatccacccggtcctgaggcagcaccgctgcagctccagtaatgaggattgagccatccccatggtagctgggtggttgtggctgcaaggggaactggccaaatgagta
s macFas5.chr5             189015560 236 + 189454096 -------------------------------------------------------------actgtggaactggcagagctgggaaacagtttcaggagga-agtggagagcacagcacaggtggcttctccctctaggggacatgaggtgttg----tctgcatttgaggtaggtagaatggtgtccaccacaagtcacccggtcctgaggcagcacctctacagcaccagtcatgagaattgagccatccccacggtagctgggtggtcgtggctgcaagggaaaccggccaaatgagtg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178440304 297 + 178775436 GCAGAGCTAGGGAACAGCttcaggaggaaggggagagcaCAGCACAGTGCAGGGCGGCACCATCGTGGAACTGGCGGAGCTAGgaaatagtttcaggagga-agTGGAGAGCACAGCACAGGTGGCTTCTCCCTCTAGGGGACATGAGGTGCTG----TCTGCATTTGAGGTAGGTGGAATGGTGTCCACCGCAAGTCGCCTGGCCCTGAGGCAGCACCTCTACAGCACCAGTCATGAGAATTGAGCCATCCCCACGGTAGCTGGGTGGTCGTGGCTGCAAGGGAAACCGGCCAAATGAGTG
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87623723 200 - 129401213 I
e canFam3.chr16             17925828   0 -  59632846 C
e calJac3.chr3             190488611 3766 - 190850796 I
e chlSab2.chr7             135379976 281 + 135778131 I
e rheMac3.chr5             183631970 443 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4_random        3912947  12 -  23176937 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=0.000000
s hg38.chr4_KI270925v1_alt    248682 291 +    555799 agacaccacccccaccccgtctcctctgcaatgccagcctaccacgaaaatgccagacattctctgggaattaagaaggaagcatattgtCTATGCTGAGCagacatccccacgtctcctctgcaacgccagactatgacgaaaatgccagacatcctctgggaattaagaaggaagcatcctgtCTATGCTGAGCagacatccccacgtctcctctgcaatgccagactgtgacgaaaatgccagacatcctctgggaattaagaaggaagcatgctgtCCATGCTGAGC
e mm10.chr8                 87623723 200 - 129401213 I
e canFam3.chr16             17925828   0 -  59632846 C
e calJac3.chr3             190488611 3766 - 190850796 I
e chlSab2.chr7             135379976 281 + 135778131 I
e papAnu2.chr5             178440601   0 + 178775436 C
e macFas5.chr5             189015796   0 + 189454096 C
e rheMac3.chr5             183631970 443 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4_random        3912947  12 -  23176937 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=9206.000000
s hg38.chr4_KI270925v1_alt    248973 11 +    555799 agacatcccca
s rheMac3.chr5             183632413 11 + 184069350 agacattcccc
i rheMac3.chr5             I 443 C 0
s macFas5.chr5             189015796 11 + 189454096 agacattcccc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178440601 11 + 178775436 AGACATTCCCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135380257 11 + 135778131 agacattcccc
i chlSab2.chr7             I 281 C 0
e mm10.chr8                 87623723 200 - 129401213 I
e canFam3.chr16             17925828  0 -  59632846 C
e calJac3.chr3             190488611 3766 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4_random        3912947 12 -  23176937 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=205411.000000
s hg38.chr4_KI270925v1_alt    248984 176 +    555799 cgtctcctctgcaacaccagactatgacgaaagtgccagacatcctctgggaattaagaaggaagcatgctatctatgctgagcactatctagtttccaaaaatcagcttttgttcactggtggcatgaaagatgtcatcttagagccagcatccagtcagtggtacggtgtgcta
s ponAbe2.chr4             198021273 175 + 198332218 cgtttcctctgcaatgccagcctatgatgaaaatgccagacatcctctgggaattaagaaggaagcatgctatctatgctgagcactatcta-tttccaaacatcagcttttgttcactggcggcatgaaagatggcatcttagagccagcatccagtcagtggtaaggtgtgcta
i ponAbe2.chr4             M 30000 C 0
s rheMac3.chr5             183632424 175 + 184069350 catctcctctgcaacgccagaccacgacgaaagtgccaggcatcctctgggaactgagaaggacgcatgctatctatgctgagcactgtccagtttccaaaactcagcttttt-tcactgccagtgtgaacgatgtcatcttacagccagcatccagtcagcggcacggtgtgcta
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189015807 175 + 189454096 catctcctctgcaacgccagaccacgacgaaagtgccaggcatcctctgggaactgagaaggacgcatgctatctatgctgagcactgtccagtttccaaaactcagcttttt-tcactgccagtgtgaatgatgtcatcttacagccagcatccagtcagcggcacggtgtgcta
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178440612 175 + 178775436 CATCTCCTCTGCAACGCCAGACCACGACGAAAGAGCCAGGCATCCTCTGGGAATTGAGAAGGACGCATGCTATCTATGCTGAGCACTATCCAGTTTCCAAAACTCAGCTTTTG-TCACTGCCAGCGTGAATGATGTCATCTTACAGCCAGCATCCAGTCAGCGGCACGGTGTGCTA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135380268 171 + 135778131 catctcctctgcaacgccagaccacgacgaaagagccaggcatcctctgggaattgagaaggacgcatactatctatgctgagcactatccagtttccaaaactcagcttttg-tcactgccagcgtgaacgatgccatcttacagcc----tccagtcagcggcacggtgtgcta
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87623723 200 - 129401213 I
e canFam3.chr16             17925828   0 -  59632846 C
e calJac3.chr3             190488611 3766 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=1471514.000000
s hg38.chr4_KI270925v1_alt    249160 981 +    555799  
s ponAbe2.chr4             198021448 973 + 198332218  
i ponAbe2.chr4             C 0 M 284
s rheMac3.chr5             183632599 944 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189015982 945 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178440787 945 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135380439 945 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190492377 948 - 190850796  
i calJac3.chr3             I 3766 C 0
e mm10.chr8                 87623723 200 - 129401213 I
e canFam3.chr16             17925828   0 -  59632846 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=29786.000000
s hg38.chr4_KI270925v1_alt    250141 27 +    555799 acaacagggatgcagcaTGGTAAGACC
s rheMac3.chr5             183633543 27 + 184069350 ccaacggggacccagcaTGGCAAGACG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189016927 27 + 189454096 ccaacggggacccagcaTGGCAAGACG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178441732 27 + 178775436 TCAAAGGGGACCCAGCATGGCAAGACG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135381384 27 + 135778131 tcaaaggggacccagcaTGGCAAGACG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190493325 27 - 190850796 cccacggggacccagcaTGGCAAGATG
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87623723 200 - 129401213 I
e canFam3.chr16             17925828  0 -  59632846 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198022421 284 + 198332218 M
e panTro4.chr4             192915934 35667 + 193495092 M

a score=87502.000000
s hg38.chr4_KI270925v1_alt    250168 68 +    555799 TCCTTTAGACAATAGAAGAAA-----AAAATTGAGGACTGAAAAAAATGAGAAG---CCTGACTAAATAAAAATTA
s rheMac3.chr5             183633570 70 + 184069350 TCCTTTAGACAAAAGAAGAAA---ACAAAATTGAGGACTGAAAAAAATGAGAAG---CCTGACTAAATAAAAATTA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189016954 70 + 189454096 TCCTTTAGACAAAAGAAGAAA---ACAAAATTGAGGACTGAAAAAAATGAGAAG---CCTGACTAAATAAAAATTA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178441759 70 + 178775436 TCCTttagacaaaagaagaaa---acaaaattgaggactgaaaaaaatgagaag---cctgactaaataaaaatta
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135381411 70 + 135778131 TCCTTTAGACAAAAGAAGAAA---ACAAAATTGAGGACTGAAAAAAATGAGAAG---CCTGACTAAATAAAAATTA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190493352 72 - 190850796 TCCTTTAGACAAAAAAGAAAAGAAATAAAATTGAGGACTG-AAGAAACAAGAAG---CCGGACTGAATAAAAAATA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17925828 69 -  59632846 TCCTTTCG--AAAGGAAGAATTGGGTGAAATAAA-----TAAATAAATAGGAAGCATCCAGACTTAAAAAAAAACA
i canFam3.chr16            C 0 I 8
e mm10.chr8                 87623723 200 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198022421 284 + 198332218 M
e panTro4.chr4             192915934 35667 + 193495092 M

a score=102578.000000
s hg38.chr4_KI270925v1_alt    250236 55 +    555799 TATCTAGGAATCTGTTGTTTTGTTGGTAAAAC-AAGATTGTTCCAATATTTTTCAT
s ponAbe2.chr4             198022705 55 + 198332218 TATCTAAGAATCTGTTGTTTTGTTGGTAAAAC-AAGATTGCTCCAATATTTTTCAT
i ponAbe2.chr4             M 284 C 0
s rheMac3.chr5             183633640 56 + 184069350 TATCTAGGAATCTGTTGTTTTGTTGGTAAAACAAAGGTTGCTCAAATGTATTTCAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189017024 55 + 189454096 TATCTAGGAATCTGTTGTTTTGTTGGTAAAAC-AAGGTTGCTCAAATGTATTTCAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178441829 55 + 178775436 tatctagGAATCTGTTGTTTTGTTGGTAAAAC-AAGGTTGCTCAAATGTATTTCAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135381481 55 + 135778131 TATCTAGGAATCTGTTGTTTTGTTGGTAAAAC-AAGGTTGCTCAAATGTATTTCAT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190493424 55 - 190850796 TATCCAGGAACCTGCTGTTTTATAGCTAAAAC-GAGGTTGCTCGAATGTATTTCAG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17925905 53 -  59632846 GATCTGGGAGTCTGTTG--GTATAGGTGACAC-AAGATTGTACAAACATATATTAT
i canFam3.chr16            I 8 I 1
e mm10.chr8                 87623723 200 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=784000.000000
s hg38.chr4_KI270925v1_alt    250291 398 +    555799  
s ponAbe2.chr4             198022760 398 + 198332218  
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183633696 426 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189017079 393 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178441884 393 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135381536 393 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190493479 432 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87623923 426 - 129401213  
i mm10.chr8                I 200 C 0
s canFam3.chr16             17925959 395 -  59632846  
i canFam3.chr16            I 1 I 366
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=-1187.000000
s hg38.chr4_KI270925v1_alt    250689  1 +    555799 T-----------
s ponAbe2.chr4             198023158  1 + 198332218 T-----------
i ponAbe2.chr4             C 0 C 0
s mm10.chr8                 87624349 12 - 129401213 TGCATGGGACTA
i mm10.chr8                C 0 C 0
e canFam3.chr16             17926354 366 -  59632846 I
e calJac3.chr3             190493911  0 - 190850796 C
e chlSab2.chr7             135381929  0 + 135778131 C
e papAnu2.chr5             178442277  0 + 178775436 C
e macFas5.chr5             189017472  0 + 189454096 C
e rheMac3.chr5             183634122  0 + 184069350 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=1082767.000000
s hg38.chr4_KI270925v1_alt    250690 562 +    555799  
s ponAbe2.chr4             198023159 564 + 198332218  
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183634122 569 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189017472 569 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178442277 568 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135381929 569 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190493911 558 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87624361 616 - 129401213  
i mm10.chr8                C 0 I 1150
s canFam3.chr16             17926720 549 -  59632846  
i canFam3.chr16            I 366 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=1012357.000000
s hg38.chr4_KI270925v1_alt    251252 591 +    555799  
s ponAbe2.chr4             198023723 591 + 198332218  
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183634691 587 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189018041 587 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178442845 587 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135382498 611 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190494469 538 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17927269 552 -  59632846  
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87624977 1150 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=988089.000000
s hg38.chr4_KI270925v1_alt    251843 477 +    555799 ATCAGAGCCTGTCT------------TCTAACCAAGGCTACAAAGTCAATATTCCTACAGGGGTAAC---AGTTTCTTGCATTTTTCCCtatcataacattttcatatcataacac--agt--cataAAAATAATTAATTCCACAAGGCATTCATCTCATTTATATCTTGATTGACATTTGAAACCCCTAACCAAGATCCATAAAGA-----ATTTTTTCCTCCC----CTTTCTCA-AATTTTAACATTTAGTTCTCATCCAGAAAATAACATAAGGGTTCTACTA----TATTTGTAGGTTTAATCAGCCAATTGCTTTGCACACCTGAAGTTAAGAAGAATTGATCAATTCCTAATTTCTACTGGAGCAAAAACTATGATGAAAAATCAATAGTTTAAAATGTTTAAATCACTGTTTAAAATACTACCTTATAGAGCAAACAGAATGTAGGGATTCTACACCTGACACACACCAACTAG-AAAAAAAAGTATAAATCCCCATTCAGAC
s ponAbe2.chr4             198024314 477 + 198332218 ATCGGAGCCTGTCT------------TCTGATCAAGGCTATAAAGTCAATATTCCTACAGGGGTAAC---AGTTTCTTGCATTTTTCCCTATCATAACATTTTCATATCATAACAC--AGA--CATAAAAATAATTAATTCCACAAGGCATTCATCTTATTTATATCTTGATTGACATTTGAAACCCCCAACCAAGATCCATAAAGT-----ATTTTGTCCTCAC----CTTTCTCA-AATTTTAACATTTAGTTCTCATCCAGAAAATGACATAAGCGTTCTACTA----TATTTGTAGGTTTAATCAGCCAATTGCTTTGCACACCAGAAGTTAAAAAGAATTGATCAATTCCTAATTTCTACTGGAGCAAAAACTATTATGAAAAATCAATAGTTTAAAATGTTTAAATTACTGTTTAAAATACTACCTTATAGAGCAAACTGAATGTAGGGATTCTACACCTGACACACACCAACTAG-AAAAAAATGTATAAATCCACATTCAGAC
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183635278 480 + 184069350 ATCGGAGCCTGTCT------------TCTAACTGAGGCTACAAAGTCAATATTCCTTCAGGGGTAAC---AGTTTCTTGCATTTTTCCCTATCAGAACATTTTCACATCATACCAC--AGT--CATAAAAATAATTAATTCCACAAAGCATTCATCTTATTTATATCTTGATTGACATTTGAAACCCC-AACCAAGATCCATAAAGT-----ATTTTGTCCTCAC----CTTCCCCA-AATTTTAACATTTAGTTCTCATCCAGAAAATAACATAAGGGTTCCACTGTATTTATTTGTAGGTTAAATCAGCCAATTGCTTTGTACACCTGAAGTTAAAAAGAACTGATCGATTCCTAAGTTCTACTGGAGCAAAAACTATTATGAAAAATCAATAGTTTAAAACGTTTCAATTAGTGCTTAAAATACTACCTTACAGAGCAAAGAGAATGCAGTGATTTTGCACCTGACACACACTAACCAG-AAAAAAATGTACAAATCCACATTCAGAA
i rheMac3.chr5             C 0 I 114
s macFas5.chr5             189018628 479 + 189454096 ATTGGAGCCTGTCT------------TCTAACTGAGGCTACAAAGTCAATATTCCTTCAGGGGTAAC---AGTTTCTTGCATTTTTCCCTATCAGAACATTTTCACATCATACCAC--AGT--CATAAAAATAATTAATTCCACAAAGCATTCATGTTATTTATATCTTGATTGACATTTGAAACCCC-AACCAAGATCCATAAAGT-----ATTTTGTCCTCAC----CTTCCCCA-AATTTTAACATTTAGTTCTCATCCAGAAAATAACATAAGGGTTCCACTGTATTTATTTGTAGGTTAAATCAGCCAATTGCTTTGTACACCTGAAGTTAAAAAGAACTGATCGATTCCTAAGTTCTACTGGAGCAAAAACTATTATGAAAAATCAATAGTTTAAAACGTTTCAATTAGTGCTTAAAATACTACCTTACAGAGCAAAGAGAATGCAGTGACTCTGCACCTGACACACACTAACCAG-AAAAAAATGTACAAATCCACATTCAGA-
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178443432 476 + 178775436 ATCGGAGCCTGTCT------------TCTAACTG-GGCTACAAAGTCAATATTCCTTCAGGGGTAAC---AGTTTCTTGCATTGTTCCCTATCAGAACATTTTCACATCATAacac--agt--cataaaaataattaattccaCAAGGCATTCATCTTATTTATATCTTGATTGACATTTGAAACCCC-AACCAAGATCCATAAAGT-----ATTTTGTCCTCAC----CTTCCCCA-AATTTTAACATTTAGTTCTCATCCAGAAAATAACATAAGGGTTCCACTG----TATTTGTAGGTTAAATCAGCCAATTGCTTTGTACACCTGAAGTTAAAAAGAACTGATCGATTCCTAAGTTCTACTGGAGCAAAAACTATTATGAAAAATCAATAGTTTAAAACGTTTCAATTAGTGCTTAAAATACTACCTTACAGAGCAAAGAGAATGCAGCGATTCTGCACCTGACACACactaaccagaaaaaaaatgtacaaatccACATTCAGAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135383109 473 + 135778131 ATCGTAGCCTGTCT------------TCTAACTGAGGTTACAAAGTCAATATTCCTTCAGGGGTAAC---AGTTTCTTGCATTTTTCCCTATCATAACATTTTCACATCATACCAC--AGT--CATAAAAATAATTAATTCCACAAGGCATTCATCTTATTTATATCTGGATTGACATTTGAAACCCCTAACCAAGATCCATAAAGT-----ATTTTGTCCTCAC----CTTCCCCA-AATTTTAACATTTAGTTCTCATCCAGA----AACATAAGGGTTCCACTG----TATTTGTAGGTTAAATCAGCCAATTGCTTTGTACACCTGAAGTTAAAAAGAACTGATCGATTCCTAATTTCTACTGGAGCAAAAACTATTATGAAAAATCAATAGTTTAAAATGTTTCAATTAGTGCTTAAAATACTACCTTATAGAGCAAAGAGAATGCAGCGATTCTGCACCTGACACACACTAACCAG-AAAAAAATGTACAAATCCACATTCAGAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190495007 471 - 190850796 ACAGGACCCTGTCT------------ACTAA----GGCTGCAAAGTCAATATTCCTAGAGGGGTAGC---AGTTTCTTGCATTTTTCTCTATCATAACATTTTCATATCATAACAT--AAT--CATAAAAGTAATTAATTCCACAAGGCATTCATCTGATTTATATCGTGACTGACATTTGAAACCCCTAACCAAGACCCATAAAAT-----AATTTTTCCTCAC----CTTACTCC-AATTTTAGCATTTGGTTCTCACCCAGGGAATAACAGAAAGGCTCTACTG----TATTCGTAGATCAAATCTGCCAATTTCTTTGCACACCTGAAGTTAAAAAGAATTGATCAATTCCTAATTTCTACTGGAGCAAAGGCTATTATGGAAAATCAGTAGTTTAATATGCTTCAATTACTCTTTAAAATACTACCTTACAGAGCAAACAGAATGCAGGGATTCTGTACCTG--ACACACCAACTAG-AAAAAAAAGTACGAACCCACATTCAGAA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87626127 445 - 129401213 ATCAAAGCCTGTTTAAAGGAAGAGAGACCAACCAGACCCACTAAACTAGGATT--------GGAAGT---CGGCTGTGGGGTTTTCCCACATCATAACATTTCTATACCATTCCTT--GGTGCCATGAAAATAATGAATTCAACAAGATGTTTGCCTTATTTATATCC---------------------AACCAAGATCCATAAAATTTAGGGTTTTTTTCTAAC----TCTTCTCATTTTTTTAAGGTTTTGTTTTCTCCCAGT-ACTGACAT----TTTCTATTA----TATTTGTACCTCACATCAGCC-ATTGCTTTATTCACCTGGAGATGAA---TCCTGGTTG-----TTGTTTGTAATGCAGTAAA-ACCAGTTCAGAAAATTGACAGTTTCCAATGCTTCAACCACTGGTTTA---ATTGCCTGGTACAGTAAAT--ACTACAGGGACCCTGCAGCTGTCTCAGATCAAGTAC-AAAAGAG---ACAAACCCACACTTGGAT
i mm10.chr8                I 1150 C 0
s canFam3.chr16             17927821 469 -  59632846 AGAGAAGTCTGTAT------------TCCAGCTAAAGCTATGAAGTTTATATTCCTACATGGTTCATTTGAGTTTT-----CTTTTTCTCATTGTAGCATTTCCATACTGTTCCTCTAATT--CATGAAAAT----AATTCAGTAAAACA-TCACCCCATTTATATCTGGATAACCATTTAAAATCCCTAACCAAGATCTATAAAGT-----ATTTTTTTCCTGCATATATTTCTCT-AATTTTTGTACTTAGTTGTCATCCAGAAAATAATGTAATGGTT-TACTA----TATTTGTACATTAAATCAGCCAATTGCTTTAAGCACCTGGAGATGAA-AGAATTGATCAATTCATAGTTTCTGCTGGTGCAGAACCAGTTATGAAAAATCTGTAGTTAAAAATGTTTCAACTAC--CTTAAAATACTGCCTTGTAGAATAAATAGAATGCAGGG--TCCCCACCTGTCATACATCAACCAG-AAAAAAG-GAATAAATCCACATTCAAAA
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=314825.000000
s hg38.chr4_KI270925v1_alt    252320 144 +    555799 GTATGTGAAATCACTGCCTTTGCACAGACCATTCTTTGACGGGCATTTATGAAGCCCAAGCCCACAGCAAAGGTCAGGCCTTCTCTTTGCCTTCAAATGTTAGCAGGACC-TCAAAACAAATACACAGCTTCCATACTGAGCCAA
s ponAbe2.chr4             198024791 144 + 198332218 ATATGTGAAAGCACTGCCTTTGCATAGACCATTCTTTGACGGGCATTTATCAAGCCCAAGCCCACAGTAAATGTCAGGCCTTCTCTTTGCCTTCAAATGTTAGCAGGACC-TCAAAACAAATACACAGCTTCCGTACTGACCCAA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183635872 144 + 184069350 ATATGTGGAACCACTGACTTTGCACAGACCATTCTTCGATGGGCGTTTATCAAGCCCAAGCCCACAGTAAAAGTCAGGCCTTCTCTTTGCCTTCAAATGTTAACAGGACC-TCAGAACAAATACACAGCTTTCACACTGAGCCAG
i rheMac3.chr5             I 114 C 0
s macFas5.chr5             189019107 144 + 189454096 ATATGTGGAACCGCTGACTTTGCACAGACCATTCTTCGATGGGCGTTTATCAAGCCCAAGCCCACAGTAAAAGTCAGGCCTTCTCTTTGCCTTCAAATGTTAGCAGGACC-TCAGAACAAATACACAGCTTTCATACTGAGCCAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178443908 144 + 178775436 ATATGTGGAACCACTGACTTTGCACAGACCATTCTTCCATGGGCGTTTATCAAGCCCAAGCCCACAGTAAAAGTCAGGCCTTCTCTTTGCCTTCAAATGTTAGCAGGACC-TCAGAACAAATACACAGCTTTCGTACTGAACCAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135383582 143 + 135778131 ATACGTGGAACCACTGACTTTGCACAGACCATTCTTCAATGGGCGTTTATCAAGCCCAAGCCCACAGTAAACGTCAGGCCTTCTCTTGG-CTTCAAATGTTAGCAGGACC-TCAGAACAAATACACAGCTTTCATACTGAGCCAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190495478 138 - 190850796 ACACGTGGGAGCACTGACTTTGTACAGCACATTCTGGGATGGACATTTATC-AGCCCAAGCCCACTGTAAATGACAGGCCTTCTCTCTGCCTTTAAATGTTAGCAAGACC-T-----CAAATACACAGCTTTCATACTGAGCTAA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87626572 137 - 129401213 ATATGTGAAAATACTCACTTTGTGTAGCCCA-TCTGTGACAAGCGTTTATT------GAGTCTATTGTAAACATCTGTCCTTTTCTTTGACTTCAGCACTGTGAAGACTT-TCAAAACAACTGCATAGTTCTCATCCCAAGCCAA
i mm10.chr8                C 0 I 1044
s canFam3.chr16             17928290 137 -  59632846 --ATATGAAAGCATTGGCTTTACATAGACCATTATTTGATGGACATTTATC------AAAGTCACAGTAAACACCAGGCCTTTTCTTTGGCCTCAAATGCTAGCAAGACCATCAAAACACCTGCACAGCTTTCATATTGAGCCAA
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=296637.000000
s hg38.chr4_KI270925v1_alt    252464 164 +    555799 CTCACCCTTCTTCTAGGCcagtggt---------------------------------------------------------tctccaacgggcacaattttgcccacaggggacatttgacaaa-gcttgaagatattttagttgtcacaactgggagaatactactggcccatggtgggtaaagacca-ggatgctgccaaacatcttaccatggacagtg
s ponAbe2.chr4             198024935 165 + 198332218 CTCACCCTTCTTCTAAGCcagcggt---------------------------------------------------------tctccaacgggcacaattttgcccacaggggacatttgacaaa-gctggaagatattttagttgtcacaactgggagaatactacaggcccatggtgggcatcagccagggatgctgctaaacaccctaccgtggacagtg
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183636016 165 + 184069350 CTCACCCTTCTTGTAAGCcagtggt---------------------------------------------------------tctccaatgggcacaattttgcccacaggggacatctgacaaa-gtttgaagatattttagttgtcacaactgggagaatactaccggtccatagtgggtaaaggccagggacgctgctaaacatcctgccatagacagtg
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189019251 165 + 189454096 CTCACCCTTCTTGTAAGCcagtggt---------------------------------------------------------tctccaatgggcacaattttgcccacaggggacatttgacaaa-gtttgaagatattttagttgtcacaactgggagaatactaccggtccatagtgggtaaaggccagggacgctgctaaacatcctgccatagacagtg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178444052 165 + 178775436 CTCAGCCTTCTTCTAAGCCAGTGGT---------------------------------------------------------TCTCCAATGGGCACAATTTTGCCCACAGGGGACATTTGACAAA-GTTTGCAGATACTTTATTTGTCACGACTGGGAGAATACTACTGGTCCATAGTGGGTAAAGGCCAGGGacgctgctaaacatcctgccaTAGACAGTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135383725 165 + 135778131 CTCAGCCTTCTTCTAAGCcagtggt---------------------------------------------------------tctccaatgggcacaactttgcccacaggggacatttgacaaa-gtttgaagatattttagttgtcacgactgggagaatactactggtccatagtgggcaaaggccagggccgctgctaaacatcctgccacagacagtg
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190495616 220 - 190850796 CTCACCCTT-TTCTAAACCAGTGCTATGGCCACCACATCTAAGCCACTGAGGGGGCAAAACTGTGCTTATTGGAGATGCCCATGTCTAACAAGCAcaattttgcccac-ggggacatttgttgaa-gtttgaagataatttagttgtcgcaatggggagactactactggaaggtagtgggtaaaggccagggatgctgctagacatcccaccatgcccagtg
i calJac3.chr3             C 0 I 524
s canFam3.chr16             17928427 163 -  59632846 CTTTCTCTTCCCAGAGGCcagtggt---------------------------------------------------------tctcagctggaggtaattttg-ccacaggggacatttagtaaatgtctgaagatattttagttgtctcaac-gggggaatactactggcattgagtaggtaaaggccaggggt-ctgttaaataacctgcaatgcacagag
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87626709 1044 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=895527.000000
s hg38.chr4_KI270925v1_alt    252628 545 +    555799  
s ponAbe2.chr4             198025100 550 + 198332218  
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183636181 547 + 184069350  
i rheMac3.chr5             C 0 I 50
s macFas5.chr5             189019416 527 + 189454096  
i macFas5.chr5             C 0 I 50
s papAnu2.chr5             178444217 534 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135383890 587 + 135778131  
i chlSab2.chr7             C 0 I 178
s calJac3.chr3             190496360 538 - 190850796  
i calJac3.chr3             I 524 I 2
s canFam3.chr16             17928590 570 -  59632846  
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87626709 1044 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=-2778.000000
s hg38.chr4_KI270925v1_alt    253173 4 +    555799 acac
s ponAbe2.chr4             198025650 4 + 198332218 acac
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183636778 2 + 184069350 AC--
i rheMac3.chr5             I 50 C 0
s macFas5.chr5             189019993 2 + 189454096 AC--
i macFas5.chr5             I 50 C 0
s papAnu2.chr5             178444751 2 + 178775436 ac--
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190496900 2 - 190850796 AC--
i calJac3.chr3             I 2 I 2
s canFam3.chr16             17929160 1 -  59632846 A---
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87626709 1044 - 129401213 I
e chlSab2.chr7             135384477 178 + 135778131 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=33986.000000
s hg38.chr4_KI270925v1_alt    253177 22 +    555799 acacaca-cacacGT----GAGTACAC
s ponAbe2.chr4             198025654 22 + 198332218 acacaca-cacacGT----GAGTACAC
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183636780 26 + 184069350 ACACACA-CACACACACGTGAGTGCAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189019995 22 + 189454096 ACACACA-CACACAC----GAGTGCAC
i macFas5.chr5             C 0 I 668
s papAnu2.chr5             178444753 22 + 178775436 acacaca-cacacac----gagtgcaC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135384655 22 + 135778131 ACACACA-CACACAC----GAGTGCAC
i chlSab2.chr7             I 178 C 0
s calJac3.chr3             190496904 23 - 190850796 ACGCACAGCACATGT----GAGTGCAC
i calJac3.chr3             I 2 C 0
s canFam3.chr16             17929161 16 -  59632846 -------GGACATGC----AAGTGCAC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87626709 1044 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=546.000000
s hg38.chr4_KI270925v1_alt    253199 1 +    555799 A
s ponAbe2.chr4             198025676 1 + 198332218 A
i ponAbe2.chr4             C 0 C 0
s calJac3.chr3             190496927 1 - 190850796 A
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17929177 1 -  59632846 A
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87626709 1044 - 129401213 I
e chlSab2.chr7             135384677 0 + 135778131 C
e papAnu2.chr5             178444775 0 + 178775436 C
e macFas5.chr5             189020017 668 + 189454096 I
e rheMac3.chr5             183636806 0 + 184069350 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=156364.000000
s hg38.chr4_KI270925v1_alt    253200 82 +    555799 CATGCACAC---TTTCTCACTGAGGCTGC--AGGACTCAGGAGAATTTACATGGAAAATA--TCCACAACTTTCCCCAGGTAAGAGAGT
s ponAbe2.chr4             198025677 82 + 198332218 CATGCACAC---TTTCTCACTGAGGCTGC--AGGAGTCAGGAGAATTTACATGGAAATTA--TCTGCAACTTTCCCCAGGCAAGAGAGT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183636806 82 + 184069350 CTTGCACAC---TTTCTCACTGAGGCTGC--AGGAGTCAGGAGAATTCACATGGAAATGA--TCTGCAACTTTCCCCAGGTAAGAGAGT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189020685 82 + 189454096 CTTGCACAC---TTTCTCACTGAGGCTGC--AGGAGTCAGGAGAATTCACATGGAAATGA--TCTGCAACTTTCCCCAGGTAAGAGAGT
i macFas5.chr5             I 668 C 0
s papAnu2.chr5             178444775 82 + 178775436 CTTGCACAC---TTTCTCACTGAGGCTGC--AGGAGTCAGGAGAATTCACATGGAAATGA--TCTGCAACTTTCCCCAGGTAAGAGAGT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135384677 82 + 135778131 CATGCACAC---TTTCTCACTGAGGCTGC--AGGAGTCAGGAGAATTCACATGGAAATGA--TCTGCAACTTTCCCCAGGTAAGAGAGT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190496928 80 - 190850796 --CAGGCAC---TTTCTCACTGAGGCTGC--AGGAGTGGGGAGAATTTACATGGAAGTTG--TCTGCAACTTTTTCCAGGTAAGCGAGT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17929178 89 -  59632846 GATGCACATTGGTTTCTTACTGATGCAGCATAGTAATCAGAGGACCTTATACAGAACggaaggctttgactttcctcaggtaagagcat
i canFam3.chr16            C 0 I 298
e mm10.chr8                 87626709 1044 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=445932.000000
s hg38.chr4_KI270925v1_alt    253282 253 +    555799 TGGCTAATCCCCTGGGTTAGCCAGTCCAGGCCATGCCCAC------TTGTA-GATTTCCTTACATGCAGCAAACCCATTTCCCTTAGTGTTTAATCT--TATTCTCATTGGACTTTC---TATTACATGAAGCCAAAATCTC----CCTGCTACAACTTCTAGAATAAAACTGCAATGTTCTTGTGAAACATTTTTT-AAAAGGCATA----------------------CTCTTTATTTCATTTCTCAGATTTTTAATCAGAATTCTAAAGTATAA---TTTTTTTCTGAATAG
s ponAbe2.chr4             198025759 254 + 198332218 TGGCTAACCCCCTGGCTTAGCCAGTCCAGGCCATGCCCCC------TTCTA-GATTTTCTTACAGGCAGTGAACCCATTTCCCTTAGTGTTTAATCT--TATTCTCATTGGGCTTTC---TATTACATGAAGCCAAAATCTC----CCTGCTACAACTTCTAGAATAAAACTGCAATGTTCTCGTGAAACATTTTTT-ATAAGGCATG----------------------CACTATATATCATGTCTCAGATTTTTAATCAGAATTCTAAAGTGTGA--TTTTTTTTCTGAATAT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183636888 255 + 184069350 TGACTAACCCCCTGGATTAGCCAGTCCAGGCCTTGCCCAC------TTCTA-GATTTCTTCACATGCAGCTAACCCATTTCCCTTAGCGTTTAATCT--TATTCTCATTGGGCTGTC---TACTACATGAAGCCAAAATCTC----CCTGCTACAACTTGTAGAATAAAACTGCAATGTTCCTGTGAAACATTTTTTTAAAAAGCATG----------------------CACTTTATTTCACTTCTTGGGTTTTTAATCAGAATTCTAAAGTATGA--TTTTTTTTCTGAATAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189020767 255 + 189454096 TGACTAACCCCCTGGATTAGCCAGTCCAGGCCTTGCCCAC------TTCTA-GATTTCTTCACATGCAGCTAACCCATTTCCCTTAGCGTTTAATCT--TATTCTCATTGGGCTGTC---TACTACATGAAGCCAAAATCTC----CCTGCTACAACTTGTAGAATAAAACTGCAATGTTCCTGTGAAACATTTTTTAAAAAAGCATG----------------------CACTTTATTTCACTTCTTGGGTTTTTAATCAGAATTCTAAAGTATGA--TTTTTTTTCTGAATAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178444857 255 + 178775436 TGACTAACCCCCTGAATTAGCCAGTCCAGGCCTTGCCCAC------TTCTA-GATTTCTTCACATGCAGCTAACCCATTTCCCTTAGTGTTTAATCT--TATTCTCATTGGGCTGTC---TACTACATGAAGCCAAAATCTC----CCTGCTACAACTTGTAGAATAAAACTGCAATGTTCCTGTGACACACTTTTT-AAAAGGCATG----------------------CACTTTATTTCACTTCTCGGGTTTTTAATCAGAATTctaaagtatgat-ttttttttctgaatat
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135384759 259 + 135778131 TGACTAACCCCCTGGATTAGCCAGTCCAGGCCTTGCCCAC------GTCTA-GATTTCTTCACATGCAGCTAATCCATTTCCCTTAATGTTTAATCTTATATTCTCATTGGGCTGTCTATTATTACATGAAGCCAAAATCTC----CCTGCTACAACTTGTAGAATAAAACTGCAATGTTCCTGTGAAACATTTTTTTAAAAGTCATG----------------------CACTTTATTTCATTTCTCGGGTTTTTAATCAGAATTCTAAAGTATG---TTTTTTTTCTGAATTG
i chlSab2.chr7             C 0 I 39
s calJac3.chr3             190497008 255 - 190850796 TGGGTAATCCCCTGGATTAGCCAATCCAGGACATGcccac------ttctc-gatttctttacatg-agctaacccatttcccttagtgtttaatct--tatcctcgttgagctttc---tattacatgaagccaaaatctt----tctGCTGCATCTTCTGGAATAAAACTGCAGTGTTCTCATGAAACACTTTTT-TAAAGGCATG----------------------CACTTCATTGCATTTTTCAGGTTTTTAATCAAAATCCTCAATTATGATATTATTTTTCTGAATAT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17929565 281 -  59632846 tggatgagccactgcattattcaacccaggacctacctgcctacctttctgtggttacttgatatgtagttaacacattatccttactgttaagtgc--tcgtcttgttaggcttcc---tgttatttgaagccaaaagcttcctacctgccacaATTTCTCAAATACTGTTACAACATTCCCTTGATATAA------AAAAGGCATGGACTCTATTACATTATATGAACCACTTTGCTACACTTTTCAGGCATTTCAACACTACTCAAAATGATGA---CTTTTTTCTGAATAT
i canFam3.chr16            I 298 C 0
e mm10.chr8                 87626709 1044 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=-6117.000000
s hg38.chr4_KI270925v1_alt    253535  9 +    555799 AAGC--------aaaaa
s ponAbe2.chr4             198026013  7 + 198332218 AAGT----------TGA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183637143  4 + 184069350 AAGT-------------
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189021022 17 + 189454096 AAGTaaaaaaaaaaaaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178445112  7 + 178775436 aagt----------aaa
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190497263  4 - 190850796 AAGT-------------
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17929846  1 -  59632846 -A---------------
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87626709 1044 - 129401213 I
e chlSab2.chr7             135385018 39 + 135778131 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=592879.000000
s hg38.chr4_KI270925v1_alt    253544 334 +    555799 aaaaaaaaaaaaaaagcaaaaCCTATGACCCAAGATCATTCCGTTCCCATTATGCCAATCCTCAACATGGATTGGTGCCTCCAGGAACCAACGTTCTGTGTGGTGTCTGCGGAGGGAGGACGAGCTGGTTAGCAAAGCCTGCTCTATTTTCCTATTACATCAGATGCTCTTTTATTTGATTACACTCAAGAGACGGTAG-AATGTAAC--AAACACATCAGTTTAATATGTATGGATGGTcaagatgaaacaagttc-ctgcagcttcttcctca----ctgattgcaactgaaagctctgggcaaaatcagaaagcaactgc---------------------------------------------------------tcaagagctccag----------------------------------------------------acatcc
s ponAbe2.chr4             198026020 334 + 198332218 AAAAAAAAAAAAGAAGCAAAACCTATGACCCAAGATCATTCCATTCCCATTATGCCAATCCTCAAAATGAACTGGAGCCTCCAGGAACCAATGTTCTTTGTGGTGTCTGTGGAGGGAGGATGAGCTGGTTAGGACAGCCTGCTCTATTTTCCTATTACATCAGATACTCTTTTATTTGATTACACTCAAGAGATGGTAG-AACGTAAC--AAACACATCGGTTTAATATGTATGGATGGTcaagatgaaataagttc-ctacagcttctttctca----ctgattgcaactgaaagttctgggcaaattcagaaagcaactgc---------------------------------------------------------tcaagagctccag----------------------------------------------------acatcc
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183637147 334 + 184069350 AAAAAAAAAAAAAAGGCAAAACCTGTGGCCCGAGATCATTCCGTTCCCATTATGCCAATCCTCAACATGACCCGGAGCCTCCAGGAACCAACGTTCTGCGTGGTGTCTGCGGAGGGAGGACGAGCTGGGCGGGAAAGCCTGCTCTATTTTCCTGTTACATCAGATGCTCTTTTACTTGATGACCATCAAGAGATGGTAC-AATGTAAC--AAACACATCAGTTTAATATGTACGGATGGTcaagatgaaataagttc-ctgcagcttctttctca----ttgatcgcaactgaaagctctgggcaaaatcagaaagcaactgc---------------------------------------------------------tcgagagctccag----------------------------------------------------gcatcc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189021039 334 + 189454096 aaaaaaaaaaaaaaGGCAAAACCTGTGGCCCGAGATCATTCCGTTCCCATTATGCCAATCCTCAACATGACCCGGAGCCTCCAGGAACCAACGTTCTGTGTGGTGTCTGCGGAGGGAGGACGAGCTGGTCGGTAAAGCCTGCTCTATTTTCCTGTTACATCAGATGCTCTTTTACTTGATGACCATCAAGAGATGGTAC-AATGTAAC--AAACACATCAGTTTAATATGTACGGATGGTcaagatgaaataagttc-ctgcagcttctttctca----ttgatcgcaactgaaagctctgggcaaaatcagaaagcaactgc---------------------------------------------------------tcgagagctccag----------------------------------------------------gcatcc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178445119 334 + 178775436 aaaaaaaaaaaaaaggcaaaacctgTGACCCGAGATCATTCCGTTCCCATTATGCCAATCCTCAACATGACCCGGAGCCTCCAGGAACCAACGTTCTGCGTGGTGTCTGCAGAGGGAGGACGAGCTGGTCGGGAAAGCCTGCTCTATTTTCCAATTACATCAGATGTTCTTTTACTTGATGACCATCAAGAGATGGTAC-AATGTAAC--AAACACATCAGTTTAATATGTACGGATGGTCAAGATGAAATAAGTTC-CTGcagcttctttctca----ttgattGCAACTGAAAGCTCTCGGCAAAATCAGAAAGCAACTGC---------------------------------------------------------TCGAGAGCTCCAG----------------------------------------------------ACACCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135385057 334 + 135778131 aaaaaaaaaaaaaaagcaaaaCCTGTGGCCCGAGATCATTCCGTTCCCATTACGCCAATCCTCAACATGACCTGGAGCCTCCAGGAACCAACGTTCTGTGTGGTGTCTGCAGAGGGAGGACGAGCTGGTCAGGAAAGTCTGCTCTATTTTCCAATTACATCAGATGCTCTTTTACTTGATGACGATCAAGAGATGGTAC-AATGTAAC--AAACACATTAGTTTAATATGTACGGATGGTcaagatgaaataagttc-ctgcagcttctttctca----ttgattgcaactgaaagctctgggcaaaatcagaatgcaactgc---------------------------------------------------------tcgagagctccag----------------------------------------------------acatcc
i chlSab2.chr7             I 39 C 0
s calJac3.chr3             190497267 320 - 190850796 ----GAAGAAAGAAAGCAAAAGCTATGACCCAAGATCATTCCGTTCCCATTATGCCAATCCTCAACACGAATGGGAGCCTCCAGGAATAAACTTCCCACGTGGCCTGCTGGGAGGGAGGTGAGGCTGATC-----------CTCTGTCTTCCTGTTACATCAGCTGTTCTTTCATTTGATCACACTCAAGAAATGGTAG-AATGTAAC--AAGCACATCAGTTTAATGTATGTGAATGGTcaagatgaaataaaccc-ctgcagcttctttctca---tttgattgcaactgaaagctctgggcaaaatcagaaagccactgt---------------------------------------------------------tctagagctccag----------------------------------------------------ataccc
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17929847 438 -  59632846 AATAAGGAATAAAATGCAAAACCTATATTGTAAGATTAGGAAACTTCCTTTATGCCAACTCTCAATGTAAATTAGAGCTTGCAGGGGCAAACTTTCTGTGT---------AGAGGAAGAAT---CTGCTTGGGAAAGTAT-CTTTACATTCCTAATACTTCTGATTTTCTTTGATTCAATAACTTTAAAGAGATGGCAGAAATGTAACATATACATATCTGTTTAACTCATATTGGTtgccaacaaggattaagctcactacagcctctgtctccccttctgatgatgaccaaaagctctgggcaaaatcagaaagcagccacctAgggacacctgggtggctcagtggttgagcatctgcctttggctcagggcgtgatcccagggttccaggatggagtcccatattgggctccccccatggagcatgcttctccctctgcctatatct
i canFam3.chr16            C 0 I 111
e mm10.chr8                 87626709 1044 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=410709.000000
s hg38.chr4_KI270925v1_alt    253878 252 +    555799 acaaaagcagacagactgggaagggaataaaaactcggggaggcaacccatagagg--ggtatactaacgtgctagagtcattgcagatg--gccacagactggctg------gcaatggaaatctactctctcacggtgttgaaaactg-gagtccaagattcaggtgtgc----a-ggtgcttcttccaaggcttctggccctggcttgcaggtgg-cgtcttcgctctgtgcctcctgcagtatgtgtgtc-gtgttccagtctcct
s ponAbe2.chr4             198026354 252 + 198332218 acaagagcagacagactgagaagagaatcaaaacttggggcagcaacccataGAGG--GGtatattaacttgctagagtcattgtagatg--gccacagaccggctg------gcaatggaaatttactctctcacggtgttgaaaactg-gagtccaagattcaggtgtgc----a-gatgcttcttccaaggcttctggccctgacttgcaggtgg-catcttcgatctgtgcctcctgcagtatgtgtgtc-gtgttccagtctcct
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183637481 251 + 184069350 acaagagcaggtagactgggaagagaatcgaaactc-gggaagcaacccacagagg--ggtATATTCGTCACCCAGAGTCATTGCAGGTG--Gccgcagactggctg------gcaacggaaatttactctctcacagtgacgaaggctg-gagtccaagattcaggtgtgc----a-gatgctgcttccgaggcgtctggccctggcttgcagatgg-catcttcgctctgtgcctcctgcagtgtgtgtgtc-gtgttccagtctcct
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189021373 251 + 189454096 acaagagcaggtagactgggaagagaatcgaaactc-gggaagcaacccacagagg--ggtATATTCGTCACCCAGAGTCATTGCAGGTG--Gccgcagactggctg------gcaacggaaatttactctctcacagtgacgaaggctg-gagtccaagattcaggtgtgc----a-gatgctgcttccgaggcatctggccctggcttgcagatgg-cgtcttcgctctgtgcctcctgcagtgtgtgtgtc-gtgttccagtctcct
i macFas5.chr5             C 0 I 224
s papAnu2.chr5             178445453 228 + 178775436 ACAAGAGCAGACAGATTGGGAAGAGAATCGAAACTC-GGGAAGCAACCCACAGGG-----------CGTCACCCAGAGTCATTGCAGGTG--GCCGCAGACTGGCTG------GCAACGGAAATTTACTCTGTCACAGTGATGAAGGCTG-CAGTCCAAGATTCAGGTGTGC-------------------AGGCGTCTGgccctggcttgcagatgg-cgaCTTCGCTCTGTGCCTCCTGCAGTGTGTGTGTT-GAGTTCCAGTCTCCT
i papAnu2.chr5             C 0 I 28
s chlSab2.chr7             135385391 251 + 135778131 acaagagcagacagattgggaagagaatcaaaactc-gggaagcaacccacagagg--ggtATATTCGTCACCTAGAGTCATTGCAGGTG--Gccgcagactggctg------gcaacggaaatttactctctcgcagtgacaaaagctg-gagtccaagattcaggtgtgc----a-ggtgccgcttccgaggcgtctggccctggcttgcagatgg-cgtcttcgctctgtgcctcctgcagtgtgtgtgtt-gtgttccagtctcct
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190497587 252 - 190850796 acaagag-agacagactggggagagaatcaaCAGCA-GGGGAGCATCCCACAGAGG--GGTCtattaatttgtcagagtcactgcagatg--gccacagactggccg------gccacggaaatctactctctcacgatgttgaaggctg-cagtccaagattcaggtgttc----agggtgctgcttctgaggcgtccggccctggcttgcagacgg-cgccttcgctccgtgcctcctgcagcggacgtgtctgtgttccagcctctt
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17930396 266 -  59632846 acaagagcagatagattggaagaagaatcaaaacttggagaagttgccaacataggtatatatattcgcttgcaagggcttctataaaaaataccacagactgggtgactttaacaacagacattaattttgtcacagttctggagactgaaagtctaaaatcaaggtgccatcaga-gttgttccttctgaggcctctgtccttggtttacagatggcccccctctcccttgtccttacatgctctttcctct-ctgtgtctgtatc--
i canFam3.chr16            I 111 C 0
e mm10.chr8                 87626709 1044 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=9779.000000
s hg38.chr4_KI270925v1_alt    254130 4 +    555799 cttc
s ponAbe2.chr4             198026606 4 + 198332218 cttc
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183637732 4 + 184069350 cttc
i rheMac3.chr5             C 0 I 832
s macFas5.chr5             189021848 4 + 189454096 cttc
i macFas5.chr5             I 224 C 0
s papAnu2.chr5             178445709 4 + 178775436 CTTC
i papAnu2.chr5             I 28 C 0
s chlSab2.chr7             135385642 4 + 135778131 cttc
i chlSab2.chr7             C 0 I 4
s calJac3.chr3             190497839 4 - 190850796 cttc
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17930662 4 -  59632846 tttc
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87626709 1044 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=225170.000000
s hg38.chr4_KI270925v1_alt    254134 178 +    555799 ccatcagggcacaggccagattgc-----gg----cccctgatgccctcatgttacctcaatcacgtctttaaagctgctgtttccaaatacagtcacactctcagatact-ggggctggggcttcattttgtgagtttcaagggggacac-gattcagtccatata-aaggaagtgcttcctttgaggg
s ponAbe2.chr4             198026610 183 + 198332218 ttatcaaggcactggccagattgcacgt-gg----cccctgatggcctcatgttacctcaatcacgtctttaaagctattttctctaaatacagtcacactctcagatcct-ggggctggggcttcattttgagagtttcaaggtggacacaaattcagtccataTA-AAGGAAGAGCTTCCTTTGGGGG
i ponAbe2.chr4             C 0 M 1261
s macFas5.chr5             189021852 183 + 189454096 ccatcaggtcaccggccggattgcacgc-gg----cccctgatgacctcatgttacctcaatcacgtctttaaagctgctgtctccaaatacagtcacactctcagatact-ggggctggggcttcattttgtgagtttcaagggggacac-gattcagtccataTAAAAGGAAGTGCTTCCTTTGGGGG
i macFas5.chr5             C 0 I 1
s papAnu2.chr5             178445713 182 + 178775436 CCATCAGGGCACCGGCCGGATTGCATGT-GG----CCCCTGATGACCTCATGTTACCTCAATCACGTCTTTAAAGCtgctgtctccaaatacagtcgcACTCTCAGATACC-GGGGCTGGGGCTTCATTCTGTGAGTTTCAA-GGGGACAC-GATTCAGTCCATATAGAAGGAAGTGCTTCCTTTggggg
i papAnu2.chr5             C 0 I 1
s chlSab2.chr7             135385650 183 + 135778131 gcaccagggcaccggccagattgcacgc-ag----cccctgatgacctcatgttacctcaatcacgtctttaaagctgctgtctccaaatacagtcacactctcagatact-ggggctggggcttccttttgtgagtttcaaggggtacac-gatacagtccataTAAAAGGAAGTGCTTCCTTTGGGGG
i chlSab2.chr7             I 4 I 1
s calJac3.chr3             190497843 183 - 190850796 ttaactgggcactggccagactgcatgtggg----tccctgatgacctcacgttacctctgtcacttctttaatgctgctgtttccaaatatggtcacgctgtcagatacc-ggggctgggacttcattttgtgagtttcaa-ggggacac-gattcagttcataaAAAAGGACATGCTTCCTTTCGGGG
i calJac3.chr3             C 0 I 3
s canFam3.chr16             17930666 186 -  59632846 ttgtgaagacactggtcatgtgggatta-gggttcaccctaatgcctcctgttttacttaattacctctttaaaggtctgatctcgaaacacagttacattctgcggtcctaggggctagggcttcagtatataaattttga--gcgatgc-aattcaactcataacaagggatgagtttcccttttgtt
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87626709 1044 - 129401213 I
e rheMac3.chr5             183637736 832 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=187552.000000
s hg38.chr4_KI270925v1_alt    254312 252 +    555799 gttagtttttttgttttttggctctccccagtggagcgccagctgtggtggcacaagcagct-aattcccaggagaaatccagtgtctgtggccagatg--------------------caaaaaggatcctgt-cttcaaagcgtggggggaaGAAATTGTGTGTGTTCTCTCAATCCCCGTCTCTCCCACCCCTCTTCCTCCCTCCTCTGCTCCGCTTTTCCTGTCTCCTTCCTCTCGCCCCTCTTTCCCCAGCTCTTCTGTCCCTCTCTTT
s macFas5.chr5             189022036 253 + 189454096 GTTAGTTTTTTTGTTTTTTGGCTCTccccagtggagcgccagctgtggtggcacgagcagct-aaatcccaggggaaatccggtgtctccagccagaag--------------------aaaaaggactcctgtgctccaaagcgtggggggaagaaatcccGTGTGTTCTCTCAGTCCCTGTCTCTCCCGCCTCTCTTCCTCCCTCCTCTGCTCCCCTCTTCCTGTCTCCTCCCTCTCACCCCTCTTCTCCCACCTCGTCTGTCCCTCTCTTT
i macFas5.chr5             I 1 C 0
s papAnu2.chr5             178445896 252 + 178775436 gttagtttttttgttttttggctctCGTCAGTGGAgcgccagctgtggtggcaccaGCAGCT-AAATCCCATGGGAAATCCGGTGTCTCCGGCCAGAAG--------------------AAAAAGGACTCCTGTGCTCCAAAGCGTGGGGGGAAGAAATCCCGTGTGTtctctcagtccctgtctctcccgcctctcttcctccc-cctctgctcccctcttcctgtctcctccctctcacccctcttctcccacctcttctgtccctctcttt
i papAnu2.chr5             I 1 C 0
s chlSab2.chr7             135385834 252 + 135778131 GTTAGTTTTTTTG-TTTTTGGCTCTCCCCAGTGGAGCACCAGCTGTGGTGGCATGAGCAGCT-AAATTCCAGGGGAAATCCAGTGTGTCCGGCCAGAAG--------------------AAAAAGGACTCCTGTGCTCCAAAGCATGGGGGAAAGAAATCCCGTGTGTTCTCTCAATCCCTGTCTCTCCTGCCTCTCTTCCTCCCTCCTCTGCTCCCCTCTTCCTGTCTCGTCCCTCTCACCCCTCTTTTCCCACCTCTTCTGTCCCTCTCTTT
i chlSab2.chr7             I 1 C 0
s calJac3.chr3             190498029 242 - 190850796 GGTGGTT-------TTTTTGGCTCTCTCCAGTGGAGCACCAGCTGTGGTGACATGCGCAGTT-AAATCCCAGGAGAAATCCAGTCTCTCTGGCCAGCAG--------------------AAAAGGGACTCCTATGCTCCAGAGCATGGGGGGAAG-AATCCTGAGTGCCCGCTC--TACCGGcctctcccacctgtctttctccctcctctgctcctcccttcctgcctcctccttctctctcctcttttcccgcctcttctg-acctcttgtc
i calJac3.chr3             I 3 C 0
s canFam3.chr16             17930852 182 -  59632846 gttgctgtttctc-tttttgtcattccccagtagagctgaaactgtggtggcataagcagctaaaattccaggagaaatcctatcttcctgaccagaagaactgaaagaaggggGGAAAAAAAAAACAACTTTTGCCCTCAAGCATGGGAGGAAGAAATCCTAGG------------------------------------------------------CTTGCTGTCTTTCTCTTG-------------------------------------
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87626709 1044 - 129401213 I
e rheMac3.chr5             183637736 832 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198026793 1261 + 198332218 M
e panTro4.chr4             192915934 35667 + 193495092 M

a score=57011.000000
s hg38.chr4_KI270925v1_alt    254564 101 +    555799 TTCCCTCCCCACTTCTTTTCCCTCCTCCCTTTCTCTTCTCTCCCCTTTCTCTCCCTACTCTCCCTCCCCAGCTTCCTTTCCCTCCATCTTCCTCCTTCTCC--------------------------------------------------
s macFas5.chr5             189022289 149 + 189454096 TTCCCTCCCCACTTCTTTTCCCTCCTCCTTTTCTCTTCTCTCCCCTTTCTCTCCCCATTCTCCCTCCCCAGTTTCCTCTCA--CTGTCTTCCTCCTTCTCCCTCTCCCTGCTTCTCCCTCTCTCCCTCCCTCTCCCTGCTTGTCTCTCTCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178446148  97 + 178775436 ttccctccctgcttcttttccctcctccttttcttttctctcccctttctctccccattctccctccctaatttcctct----ctgtcttcctccttctcc--------------------------------------------------
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135386086  99 + 135778131 TTCCCTCCCTGCTTCTTTTCCCTCCTCCTTTTCTCTTCTCTCCCCTTTCTCTCCCCATTCTCCCTCCCCAATTTCCTCTCA--CTGTCTTCCTCCTTCTCC--------------------------------------------------
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190498271  80 - 190850796 ttctctccccacctcttttgcctcctccctttttcttttctcccc------------cactctgtccccaacttcct------ctgtcttcctc---ctcc--------------------------------------------------
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87626709 1044 - 129401213 I
e canFam3.chr16             17931034   0 -  59632846 C
e rheMac3.chr5             183637736 832 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198026793 1261 + 198332218 M
e panTro4.chr4             192915934 35667 + 193495092 M

a score=9802.000000
s hg38.chr4_KI270925v1_alt    254665 14 +    555799 --CTCTCCCtccttct
s macFas5.chr5             189022438 14 + 189454096 --CTCTCCCTCCTTGT
i macFas5.chr5             C 0 I 67
s papAnu2.chr5             178446245 14 + 178775436 --ctctccctccttgt
i papAnu2.chr5             C 0 I 95
s chlSab2.chr7             135386185 14 + 135778131 --CTCTCCCTGCTTGT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190498351 14 - 190850796 --ctctccctccCGTC
i calJac3.chr3             C 0 I 1
s canFam3.chr16             17931034 14 -  59632846 CTGTCTCCCtctct--
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87626709 1044 - 129401213 I
e rheMac3.chr5             183637736 832 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198026793 1261 + 198332218 M
e panTro4.chr4             192915934 35667 + 193495092 M

a score=6505.000000
s hg38.chr4_KI270925v1_alt    254679 6 +    555799 ctctct
s rheMac3.chr5             183638568 6 + 184069350 ctctcc
i rheMac3.chr5             I 832 C 0
s macFas5.chr5             189022519 6 + 189454096 CTCTCC
i macFas5.chr5             I 67 C 0
s papAnu2.chr5             178446354 6 + 178775436 ctctct
i papAnu2.chr5             I 95 C 0
s chlSab2.chr7             135386199 6 + 135778131 CTCTCT
i chlSab2.chr7             C 0 I 225
s calJac3.chr3             190498366 4 - 190850796 CTCT--
i calJac3.chr3             I 1 C 0
s canFam3.chr16             17931048 6 -  59632846 ctcttt
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87626709 1044 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198026793 1261 + 198332218 M
e panTro4.chr4             192915934 35667 + 193495092 M

a score=67469.000000
s hg38.chr4_KI270925v1_alt    254685 48 +    555799 cttcttgtcacgtttccctttaggtggcaccagttatagagccacatc
s rheMac3.chr5             183638574 48 + 184069350 cttcttgtcacgtttccctttaggtagcaccagttacagagccacatc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189022525 48 + 189454096 CTTCTTGTCACGTTTCCCTTTAggtagcaccagttacagagccacatc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178446360 48 + 178775436 cttcttgcCACATTTCCCTTTAGGTAGCACCAGTTATAGAGCCACATC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135386430 48 + 135778131 CTTCTTGACACGTTTCCCTTTAggtagcaccagttacagagccacatc
i chlSab2.chr7             I 225 C 0
s calJac3.chr3             190498370 47 - 190850796 -TTCTTGCCACGTTTCCCTCAAGGTGGCACAAGTCACAGAGCCACATC
i calJac3.chr3             C 0 I 206
s canFam3.chr16             17931054 43 -  59632846 cttcttgccacaaaggcctgaagg-----ccagttatgtagttgcatc
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87626709 1044 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198026793 1261 + 198332218 M
e panTro4.chr4             192915934 35667 + 193495092 M

a score=19722.000000
s hg38.chr4_KI270925v1_alt    254733 27 +    555799 --------tgtgtggtgcctcagggcaaggacttt--
s rheMac3.chr5             183638622 27 + 184069350 --------tgtgtggtgcctcagagttaggacttt--
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189022573 27 + 189454096 --------tgtgtggtgcctcagagttaggacttt--
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178446408 27 + 178775436 --------TGTGTGGTGCCTCAGAGTTAGGACTTT--
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135386478 27 + 135778131 --------tgtgtggtgcctcagagttaggacttt--
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17931097 37 -  59632846 tgtgacaatatatgcagctacagctatagcaaaacaa
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87626709 1044 - 129401213 I
e calJac3.chr3             190498417 206 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198026793 1261 + 198332218 M
e panTro4.chr4             192915934 35667 + 193495092 M

a score=886124.000000
s hg38.chr4_KI270925v1_alt    254760  882 +    555799  
s rheMac3.chr5             183638649  876 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189022600  875 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178446435  765 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135386505  826 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190498623  791 - 190850796  
i calJac3.chr3             I 206 C 0
s canFam3.chr16             17931134 1070 -  59632846  
i canFam3.chr16            C 0 I 2189
e mm10.chr8                 87626709 1044 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198026793 1261 + 198332218 M
e panTro4.chr4             192915934 35667 + 193495092 M

a score=94917.000000
s hg38.chr4_KI270925v1_alt    255642 81 +    555799 aatcatgtcgaaaatgaccatgatgcaactgaaaattaattgacatataaatcaccaggaaaatgtgaccagttctcaaga
s rheMac3.chr5             183639525 81 + 184069350 aatcatgttgaaaatgcccatgacacaattcaaaattaattgacatacgaatcaccaggaaaatgtgaccagttctcaaga
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189023475 81 + 189454096 aatcatgttgaaaatgcccatgacacaattcaaaattaattgacatacgaatcaccaggaaaatgtgaccagttctcaaga
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178447200 81 + 178775436 AATCATGTTGAAAATGCCCACAACGCAATTCAAAATTAATTGACATAtgaatcatcaggaaaatgtgaCCAGTTCTCAAGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135387331 81 + 135778131 aatcatattgaaaatgcccacaacgcaattcaaaattaattgacatatgaatcaccaggaaaatgtgaccagttctcaaga
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190499414 80 - 190850796 aatcatgttgaaaatgcccgtgatacgacccaaaattga-tgacatgtaaatcaccaggaaaatgtaaccaattctcatga
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87626709 1044 - 129401213 I
e canFam3.chr16             17932204 2189 -  59632846 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198026793 1261 + 198332218 M
e panTro4.chr4             192915934 35667 + 193495092 M

a score=204957.000000
s hg38.chr4_KI270925v1_alt    255723 132 +    555799 -----------gagaagatcccaagcctgaaaagacccaatgtcaaagttatccccaaaagactctgaagcgacgctcgcatacttgtgctcagtgagatgaaggtaagtgcccttcacacgagtggaaagattgactatatc
s ponAbe2.chr4             198028088 130 + 198332218 -----------GAGAagatcccaagcctgagatgagcta-tgtcaaagttatccccaaaagactctgaagcgacgctcacataattgtgctcagtgagatgaaggtaagtgcc-ttcacatgagtggaaagaatgactatatc
i ponAbe2.chr4             M 1261 C 0
s rheMac3.chr5             183639606 132 + 184069350 -----------gagaagatcccaagcctgagatgagccagtgtcaaaattacccgcaaaacactttgaagcgacgctcacatatttgtgctcagtgagacgcaggtaagtgcacttcacatgagtggaaagattgactgtatc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189023556 132 + 189454096 -----------gagaagatcccaagcctgagatgagccagtgtcaaaattacccgcaaaacactttgaagcgacgctcgcatatttgtgctcagtgagacgcaggtaagtgcacttcacatgagtggaaagattgactgtatc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178447281 132 + 178775436 -----------GAGAAGATCCCAAGCCTGAGATGAGCCAATGTCAAAATTACCCGCAAAACACTTTGAAGCGACGCTGGCATATTTGTGCTCAGTGAGACGCAGGTAAGTGCACTTCACATGAGTGGAAAGATTGACTGTATC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135387412 132 + 135778131 -----------gagaaaatcccaagcctgagacgagccaatgtcaaaattacccgcaaaacacttcgaagcgacgctcgcatatttgtgctcagtgagacgcaggtaagtgcacttcacatgagtgaaaagactgactgtatc
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190499494 143 - 190850796 gaaaagacggtgagcagatgccaagcctgagatgagacaatgtcaaaattacccagaaaagactctgaagcggcactagcatgattgtgctcaatgagagaagggtaagtgcaggtcacgtgagtggaaagctcgaccatatc
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87626709 1044 - 129401213 I
e canFam3.chr16             17932204 2189 -  59632846 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=1513434.000000
s hg38.chr4_KI270925v1_alt    255855 913 +    555799  
s ponAbe2.chr4             198028218 914 + 198332218  
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183639738 904 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189023688 904 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178447413 898 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135387544 871 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190499637 924 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17934393 922 -  59632846  
i canFam3.chr16            I 2189 C 0
e mm10.chr8                 87626709 1044 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=1239328.000000
s hg38.chr4_KI270925v1_alt    256768 635 +    555799  
s ponAbe2.chr4             198029132 635 + 198332218  
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183640642 614 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189024592 614 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178448311 617 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135388415 629 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190500561 627 - 190850796  
i calJac3.chr3             C 0 I 311
s mm10.chr8                 87627753 701 - 129401213  
i mm10.chr8                I 1044 C 0
s canFam3.chr16             17935315 652 -  59632846  
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=70689.000000
s hg38.chr4_KI270925v1_alt    257403 29 +    555799 AAATATAAACATACATTCCCTTAACAACA
s ponAbe2.chr4             198029767 29 + 198332218 AAATATAAACATACATTCTCTTAACAACA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183641256 29 + 184069350 AAATATAAACATACATTCTCTTAACAGCA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189025206 29 + 189454096 AAATATAAACATACATTCTCTTAACAGCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178448928 29 + 178775436 aaatataaacatacattctCTTAACAGCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135389044 29 + 135778131 AAATATAAACATACATTCTCTTAACAGCA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190501499 29 - 190850796 aaaTGCAAACATACATTCTCTTAACAACA
i calJac3.chr3             I 311 C 0
s mm10.chr8                 87628454 29 - 129401213 AGACACATGCTTACATCTTCTCAGAAATA
i mm10.chr8                C 0 I 23
s canFam3.chr16             17935967 29 -  59632846 GGATATAAACACATACTCCCTTAACAACT
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=109389.000000
s hg38.chr4_KI270925v1_alt    257432 57 +    555799 CTCAGTACCTTAACTGCGGCGACAGTCAACAAAATGCTCTTGTGTGGTTTTGTGTTG
s ponAbe2.chr4             198029796 57 + 198332218 CGCAGTACCTTAACTGCGGCGACAGTCAACAAAATGCTCTTGCGTGGTTTCGCGTTG
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183641285 57 + 184069350 CACAGTACCTTAACTGCGGGGACAGTCAACAAAACGCTCTTGCATGGTTTCGTGTTG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189025235 57 + 189454096 CACAGTACCTTAACTGCGGGGACAGTCAACAAAACGCTCTTGCATGGTTTCATGTTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178448957 57 + 178775436 CACAGTACCTTAACTGCGGGGACAGTCAACAAAACGCTCTTGCATGGCTTCATGTTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135389073 57 + 135778131 CACAGTACCTTAACTGCGGCAACAGTCAACAAAACGCTCTTGCATGGTTTCATGTTG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190501528 57 - 190850796 CACGGTTCCTTAACTGCAGCAACGGTCAACCAAACGCTATTGCAGGATTCCACATTG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17935996 57 -  59632846 TGCAGTATCTTAACTAGGGCAACAGTAAAGAATACACTCCTGAATGATTTCACTTTG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87628483 23 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=794507.000000
s hg38.chr4_KI270925v1_alt    257489 320 +    555799 CTTTTTGCACTATTACAAATAACAAAACTACTTTGGAGAAG--TTTTTTAAAGTTTACAAATAACTGGCAATTTGGGAAACTTTTCAATGCATAACTTTATAAAAAACA----AATAAA----GA----CTCATAATAAATTAATATGTTGAATTAGGTCTAAAG---------TAGATGGGATTACATTAAAATCTCACTTCATTTTATTAAAAATTCAAT-AAAACAGTGCCAATTAAATGAGGCAATTGGTAAGAACAAGGAGAT-TACTT-GATGTTCCATACATTCTCCCTCATTATGAAGTTTCACTTTTAACAGCTTGTTGACAGTGAGTCTCTC--CTGA
s ponAbe2.chr4             198029853 324 + 198332218 CTTTTTACACTATTACAAATAACAAAACTACTTTGGAGAAG--TTTTTTAAAGTTTACAAATAACTGGCAATTTGGGAAACTTTTCAATGCATAACTTCATAAAAAACAAATTAATAAA----GA----TTCATAATAAATTAATACATTGAATTAGGTCTAAAG---------TAGATGGGATTACATTAAAATCTCATTTCATTTTATTAAAAATTCAAT-AAAACAGTGACAATTAAATGAGGCAATTGGTAAGAACACGGAGAT-TACTT-GATGTTTCATACATTCTCCCTCATTATGAAGTTTCATTTTTAACAGCTTGTTGACAGTGAGTCTCTC--CTGA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183641342 324 + 184069350 CTTTTAACATTGTTACAAATAACAAAACTACTTTGGAGAAG--TTTTTTAAAGTTTACAAATAACTGGCAATTTGGGAAACTTTTCATTGCATAACTTCataaaaaacaaattaataaa----ga----ttcataataaattaatatattGAATTAGGTCTAAAC---------TCGATGAGATTACATTAAAATCTCATTTCATTTTATTAAAAATTCAAT-AAAACAGTGCCAATTAAATGAGGCAATCGGTAAGAACAAGGAGAG-TACTT-GGTGTTCCTTACACTCTCCCTCATTGTGAAGTTTCATTTGTAACAGCTTGTTGACAGTGAGTTTCTC--CTGA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189025292 324 + 189454096 CTTTTAACATTGTTACAAATAACAAAACTACTTTGGAGAAG--TTTTTTAAAGTTTACAAATAACTGGCAATTTGGGAAACTTTTCATTGCATAACTTCATAAAAAACAAATTAATAAA----GA----TTCATAATAAATTAATATATTGAATTAGGTCTAAAC---------TCGATGAGATTACATTAAAATCTCATTTCATTTTATTAAAAATTCAAT-AAAACAGTGCCAATTTAATGAGGCAATCGGTAAGAACAAGGAGAG-TACTT-GGTGTTCCTTACACTCTCCCTCATTGTGAAGTTTCATTTGTAACAGCTTGTTGACAGTGAGTTTCTC--CTGA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178449014 310 + 178775436 CTTTTAACATTGTTACAAATAACAAAACTACTTTGGAgaag--ttttttaaagtttacaaataACTGGCAATTTGGGAAACTTTTCATTGCATAGcttcataaaaaacaaattaataaa----ga----ttcataataaattaatatattgaatTAGGTCTAAAC---------TCGATGAGATTACATTaaaatctcatttcattttattaaaaattcaat-aaaacagTGCCAATTAAATGAGGCAATCGGTAAGAACAAGGAGAG----------------TACACTCTCCCTCATTGTGAAGTTTCATTTGTAACAGCTTGTTGACAGTGAGTTTCTC--CTGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135389130 315 + 135778131 CTTTTAACATTGTTACAAATAAGAAAACTACTTTGGAGAAG--TTTTTTAAAGTTTACAAATAACTGGCAATTTGGGAAACTTTTCATTGCATAACTTCATAAAAAACaaattaataaa----ga----ttcataataaattaatatattgaattaggtctaaac---------tcgatgagattacattaaaATCTCATTTCATTTTATTAAAAATTCAAT-AAAACAGTGCCAATTAAATGAGGCAATCGGTAAGAACAAGGAGAG-TACTT-GGCGTTCCTTACACTCTCCCTCATTGTGAA---------GTAACAGCTTGTTGACAGTGAGTTTCTC--CTGA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190501585 330 - 190850796 CTTTTTACATTATCACAGACAACAAAACTACTTTGGAGAAAACGTTTTAAAAGTTTACAAATAACTGGCGATGTGGGAAACTTTTCACTGTATAACTTCATGAAAAACAAATTAATGAAGAATGA----TTCATAATACATTAATGTATTACATTAGGTCTAAAC---------TCCATGAGATTACATTAAAATCTCATTTCATTTCATTAAAAATTCAAT-AAAACAGTGCCAATTAAATGAAGCGATCAGTAAGAACAAGGAGAC-TGATGAGATGTTCCACTCATGCTCCCTCATTACAAAGTTTCATTTTTAACAGCCTGGTGACAGTGAGTCTCG---GTGA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87628506 337 - 129401213 CTTCTTCTCCCACTGCAAGTAACAAAATTCATCAGAAAAAA--ATT----AAGTTTACAAATAACTGGCAGTTGGGGAAACTTTTTGTTGCATAATTTCATACGAGAAAAATTAATGAA----GGAAACGTCATAATAAATTAGTATATTGAATTAGGTATACACATTAGGTATGAAATGAGATTACATTAAAATCTCATTTCATCCTACCAAGAACTCAATAAAAACAGTGCCAATTAAATGAGGCGGTCGGTAAGAACAAAGAGAATTTCTT-GACACTTCATGTCTTCCCCCTCATTATGAGGTTTCATTTTTAACAGCTTGTTGATAAGAGATCTCCCCACCAA
i mm10.chr8                I 23 C 0
s canFam3.chr16             17936053 326 -  59632846 CTTTTTGTGTTATTAC---TAATAAAACTCCTTAGGAGAAA--ATTTAAGAAGTTGACAAATAACTGACAATTTGGCAAACTTTTCATTGCATAACTTCATACAAAACAAATTAATGAGGGAAGA----TTCATAATAAATTAATATATTGAATTAGGTCTAAAC---------TCAATGAGATTACATTAAAATCTCATTTCATTCTATTAAAAATTCAAT-AAAATGATGCCAATTAAATGAAGCAATTGGTAAGAACACAGAGATTTACTT-GATGTTTCATCTATTCTCCCTCATTATTAGGTTTCATTTTTAACAGCTTGTTGACAGTAATTCTCTC--CTGA
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192915934 35667 + 193495092 M

a score=1083431.000000
s hg38.chr4_KI270925v1_alt    257809 345 +    555799 CAGTAGCAGGGCTAGAACCTTGAGTCAGCTTTGCAATCGACTTG-TAGAAA--------AA-CCCTCAGATTGCCAGTTAGCACATCTGCCTCTCTAGGTAATTGAATT-CTTATTGAAAATACATCATTGGCGATGTATTAGAAATAGCGGGAGAAAGAATGAAGTTAGTAGGTGGAAACACTAAAAATTGAGACAAAAGAACGGCATGAGGCATAAGAAAATAATTTAGAA-AGTTGTCACTTGCTGTAAGTTCTATTGCATTTCAACTGGGAGATTAGCTCCCAAAAGACTAATCTATTCC--CA-TTTTACTTTTGTGCCACAGGCTGCAGTTTCAAGAGGTGTGGTGAGCTTCCT
s panTro4.chr4             192951807 346 + 193495092 CAGCAGCAGGGCTAGAACCTTGAGTCTTCCTTGCAATCAACTTG-CAGGAA--------AATCCCTCAGATTGCCAGTTAGCACATCTGCCTCTCTAGGTAATTGAATT-CTTATTGAAAATACATCATTGGCGATGTATTAGAAATAGCGGGAGAAAGAATAAAGTTAGTAGGTGGAAACACTAAAAATAGAGACAAAAGAACGGCATGAGGCATAAGAAAATAATTTAGAA-AGTTGTCACTTGCTGTAAGTTCTATTGCATTTCAACTGGGAGATTAGCTCCCAAAAGACTAATCTATTCC--CA-TTTTACTTCTGTGCCACAGGCTGCAGTTTCAAGAGGTGTGGTGAGCTTCCT
i panTro4.chr4             M 35667 C 0
s ponAbe2.chr4             198030177 345 + 198332218 AAGCAGCAGGGCTAGAACCTTGAGTCAGCTTTGCAATCAACTTG-AAGAAA--------AA-CCTTCAGATTGCCAGTTAGCACATCTGCCTCTCTAGGTAATTGAATT-CTCGTTGAAAATTCATCATTGGAGATGTATTAGAAGTAGCAGGAGAAAGAATGAAGTTAGTAGGTGGAAACTCTAAAAATAGAGACAAAAGAACGGCATGAGGCATAAGAAAACAATTTAGAA-AGTTGTCACCTGCTGTAAGTTCTATTGCATTTCAACGGGGAGATTAGCTCCCAGAAGACTAATCTATTCC--CA-TTTTACTTTTGTGCCACAGGCTGCAGTTTCAagaggtgtggtgagcttcct
i ponAbe2.chr4             C 0 M 12562
s rheMac3.chr5             183641666 344 + 184069350 CAGTAGCAGGACTAGAACCATGAGTCAGCTTTGCCATCGACTTG--AAAAA--------TA-TCCTCAGATTGCCAGTTAGCACATCTGCCTCTCTAGGTAATTGAATT-CTCATTGAAAATACATCACTGGAGATGTATTAGAAATAGTGGGAGAGAGAATGAAGTTAGTAGGCGGAAACAGTAAAACTAGAGACAAAAGAACAGCATGAGGCATAAGAAAATAATTTAGAA-AGTTGTCACTCGCTGTACGTTCTATTGCATTTCAACTTGGAGATTAGCTCCCAAAAGACTAATCTATTCC--CA-TTTTATTTCTGTGCCACAGGCTGCAGTTTCAAGAGGTGTGGTGTGCTTCCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189025616 344 + 189454096 CAGTAGCAGGACTAGAACCATGAGTCAGCTTTGCCATCAACTTG--AAAAA--------AA-TCCTCAGATTGCCAGTTAGCACATCTGCCTCTCTAGGTAATTGAATT-CTCATTGAAAATACATCACTGGAGATGTATTAGAAATAGTGGGAGAGAGAATGAAGTTAGTAGGCGGAAACAGTAAAACTAGAGACAAAAGAACAGCATGAGGCATAAGAAAATAATTTAGAA-AGTTGTCACTCGCTGTACGTTCTATTGCATTTCAACTTGGAGATTAGCTCCCAAAAGACTAATCTATTCC--CA-TTTTATTTCTGTGCCACAGGCTGCAGTTTCAAGAGGTGTGGTGTGCTTCCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178449324 344 + 178775436 CAGTAGCAGGACTAGAACCATGAGTCAGCTTTGCCATCAACTtg--aaaaa--------aa-tcctcagattGCCAGTTAGCACATCTGCCTCTCTAGGTAATTGAATT-CTCATTGAAAATACATCACTGGAGATGTATTAGAAATAGTGGGAGAGAGTATGAAGTTAGTAGGCGGAAACAGTAAAACTAGAGACAAAAGAACAGCATGAggcataagaaaataatttagaa-agttgTCACTCGCTGTACGTTCTATTGCATTTCAACTTGGAGATTAGCTCCCAAAAGACTAatctattcc--ca-ttttatttctgtGCCACAGGCTGCAGTTTCAAGAGGTGTGGTGTGCTTCTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135389445 343 + 135778131 CAGTAGCAGGACGAGAACCATGAGTCAGCTTTGCCATCAACTTG--AAAAA---------A-TCCTCAGATTGCCAGTTAGCACATCTGCCTCTCTAGGTCATTGAATT-CCCATTGAAAATACATCACTGGAGATGTATTAGAAATAGTGGGAGAGAGAATGAAGTTAGTAGGCGGAAGCACTAAAACTAGAGACAAAAGAACAGCATGAGGCATAAGAAAATAATTTAGAA-AGTTGTCACTCGCTGTACGTTCTATTGCATTTCAACTTGGAGATTAGCTCCCAAAAGACTAATCTATTCC--CA-TTTTATTTCTGTGCCACAGGCTGCAGTTTCAAGAGGTGTGGTGTGCTTCCT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190501915 345 - 190850796 CAGCACCAGGGCTAGAACCATGAGTCAGGTTTGCAATCAGCTTGACAAGAA--------AC-TTCTCAGCCTGCCCGTTGGCACTTCTGCCTCTCGAGGTGACTGACTT-CTCATTGAAAGTGCATCGTTGGAGATACGTTAGACACCGCAGAAGAGAGAATGAAGTCAGCGGGTGGAAACCCTGAAAGTATAGACGGAAGAACAGCGCGGGGCCTAAGAAAATAATTCAGAA-AGTTGTCACTGGCTATAATTTCTACTGCATTTCAACCTGGAGATTCGCTCCCAAAAGACGAACCCATTCT--CA-TTTTGTTTTTGTGCCGCAGGCTGCAGTTTCGAAAGGCAT-GTGGGCTTCCT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87628843 351 - 129401213 CAGTAGTGCTGCTAGAATCATGAGTCAGCTTTGCAATCAACTTG--AGAAA--AAAAATAA-CCCTCAAATTACCATTTAGCACATCTGTCTGTCCAGGTAATTGAATTCCTTCCTGAAAATACATCGCTGGAGACATATTAAAAATAACAGGAGAGACAATGAAGTTAGTAGGTAGAAACACTAAAAATATAGTTTAAGGAACCATATGAAAC--AAGAAAATAATGTAGAAGAGTTGCTACTAGCTGAAATTCCATCTGCATCTCGACTTGGTAATTAG-TCCCCGAAGACTAATTCATTCTTGTA-TTTTATTTTTCCACCATAGGCTGCCATTTAAAGAGGTGTAGTGTTCTTCCT
i mm10.chr8                C 0 C 0
s canFam3.chr16             17936379 354 -  59632846 CAGTACTAGAGCTAGAATCATGACTCAGCTTTGAAATCAACTTG-GAGAAAAAAAAAATAA-TCCTCAAATTGCCATTTAGCACATCTGCTTCTCCAGGTAATTGAATT-CTCGTAGAAAATACATCATTGGAGATGTATTAGAAGTAGCGGCAGAGAGAATAAAGTTAGTAGGTGGAAGAGCTAAAAATATAGAATAAAGAAGAGCACAGAGCATAAGAAAATAATTTAGAA-AGTTGCTACTTGCTGTAATTTCTACTGCATTTCAACTTGGAGATTAGTCCCCAAAAGACTAATCCATTCC--CGTTTTTATTTATGCACTGCAGGCTTCAGTTTAAAGAGGTGTGGTGTGCTTGCT
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=732120.000000
s hg38.chr4_KI270925v1_alt    258154 361 +    555799 GGGCCTGCTGACTTC-AGTGTCACATCCCAGAGCTTCGTCTACTG-AAACACCCGGCTAATGGACGCAGCCACGCATCGTAACAGTCCGCCCACCAAGCCTCAGGTGGCTTGGCTCTTTACAGAAATTCACAATCATTCCACATG-------ACAGCCCACCGGCATCTGAGGTGCCAGCAAAA-GCCATATTATTTTGCTAATATCTA-ACAATTCAGAGGCAGATGTCACAGCAGATATTCCATAGTTTTTGAGTCTTCATTGCGGTTTCTTGATATCGTGGAC--AAAGACTCAGGGAAGGCCTGAGCCTCACTGACCAG-GCTCTGGATTTTGAGTGTGCTTTCCCCAA----CCTTCAGAGCTTCAGGCCCTT--T
s panTro4.chr4             192952153 361 + 193495092 GGGCCTGCTGACTTC-AGTGTCACATCCCAGAGCTTCGTCTACGG-AAACACCCGGCTAATGGATCCAGCCACGCTTCCTAACAGTCCACTCACCAAGCCTCAGCTGGCTTGGCTCTTTACAGAAATTCACAATCATTCCACATG-------ACAGCCCACCAGCGCCTGAGGTGCCAGCAAAA-GCCATATTATTTTGCTAATATCTA-ACAATTCAGAGGCAGATGTCACAGCAGATATTCCATAGTTTTTGAGTCTTCATTGCGGTTTCTTGATATCGTGGAC--AAAGACTCAGGGAAGGCCTGAGCCTCACTGACCAG-GCTCTGGATTTTGAGTGTGCTTTCCCCAA----CCTTCAGAGCTTCAGGCCCTT--T
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183642010 346 + 184069350 GGGCCTGCTGACTTT-AGTGTCACATCCCAGAGCTTGGTCTACTG-AAACACCCGGCTAATGGACCCAGCCACGCTTCCTAACAGTCCACCCACCAAGCCTTAGCTGGCTTGGCTCATTACAAAAATTCATAATCATTCCACATATGGACTCACAGCCTACCAGCATCTGAGGTGCCAGCAAAA-CCAATATTATTTTGCTAATACCTA-ACAATTCAAAGGCAGATGTCACAGTAGATATTCCGTAGTTTTTGAGTCTTCACTGCGGTTTCTTGGT-------------------------ACCCTGAGCCTCACGGACCAG-GCTCTGGATTTTGAGTGTGCTTTCCCCAGC---CCTTCAGAGCTTCAGGCCCTT--T
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189025960 346 + 189454096 GGGCCTGCTGACTTT-AGTGTCACATCCCAGAGCTTGGTCTACTG-AAACACCCGGCTAATGGACCCAGCCACGCTTCCTAACAGTCCACCCACCAAGCCTTAGCTGGCTTGGCTCATTACAAAAATTCATAATCATTCCACATATGGACTCACAGCCTACCAGCATCTGAGGTGCCAGCAAAA-CCAATATTATTTTGCTAATACCTA-ACAATTCAAAGGCAGACGTCACAGTAGATATTCCGTAGTTTTTGAGTCTTCACTGCGGTTTCTTGGT-------------------------ACCCTGAGCCTCACGGACCAG-GCTCTGGATTTTGAGTGTGCTTTCCCCAGC---CCTTCAGAGCTTCAGGCCCTT--T
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178449668 346 + 178775436 GGGCCTGCTGACTTT-AGTGTCACATCCCAGAGCTTGGTCTACTG-AAACACCTGGCTAAGGGACCCAGCCACGCTTCCTAACAGTCCACCCACCAAGCCTCAGCTGGCTTGGCTCATTACAAAAATTCATAATCATTCCACATATGGACTCACAGCCTACCAGCATCTGAGGTGCCAGCAAAA-GCAATATTATTTTGCTAATACCTA-ACAATTCAAAGGCAGACGTCACAGTAGATATTCCGTAGTTTTTGAGTCTTCACTGCGGTTTCTTGGT-------------------------ACCCTGAGCCTCACGGACCAG-GCTCTGGATTTTGAGTGTGCTTTCCCCAGC---CCTTCAGAGCTTCAGGCCCTT--T
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135389788 369 + 135778131 GGGCC-GCTGACTTT-AGTGTCACATCCCAGAGCTTGGTCTACTG-AAACACCCGGCTAAGGGACCCAGCCACGCTTCCTAACAGTCCACCCACCAAGCCTCAGCTGGCCTGGCTCATTACAAAACTTCATAATCATTCCACATATGGACTCACAGCCTACCAGCATCTGAGGTGCCAGCAAAA-GCAATATTATTTTGCTAATACCTA-ACAATTCAAAGGCAGACGTCACAGTAGATATTCTGTAGTTTTTGAGACTTCACTGCGGTTTGTTGGTGTCCTGGAC---AAGACTCAGGGGAGTCCTGAGCCTCATGGACCAG-GCTCTGGATTTTGAGCGTGCTTTCCCCAGC---CCTTCAGAGCTTCAGGCCCTTTGT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190502260 350 - 190850796 GGACCTGCTGACTTCAAGTGCCCCATCCCAGAGCTTGGAGCCCTG-AAACACCC-GCTGATGGAACCAGCCAGGCTTCCCCGCGGTCCACCCACCAGGTCTCAGC-----TGGCTCATTGCAGAAATTCACAATCATTCCACAT--------AGAGCCCACCAGCATCAGAGGTGCCAGCAAAA-GCAATGCTATTTTGCTAACATCTG-ACAGTTCAGAGGCAGAAGT--CAGCAGATAGTCCACAGTGTCTGCGTCCTCACTGCAGTGTCTCGGTATCCTGGAC--AAAGGCTCAGGGAACTCCTGGGCCTCACTGACCAG-GCTGTGGATTTTGA----GCTTTCCCCAAC---CCTTCATACCTCCAGGGCCTT--T
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87629194 341 - 129401213 GGGCCTGCTGACATTAAGTGTCACATCCCGGGGCTTAGTCTATTGAAAACAGCCTGGTAATGAGTCTATACACACTTTCAAAGAATCCACCCACCTAGTCTCAGCTGGTTTAGCTCATTACCAAAGTTCATAATCAGTCTGCTTATGGACACGGAGCCTATGAGCACTCAATGTGCCAAGAGAATGCAATATCCCCTCACTAATCTCCATGCAGCTCAGAAGCAAGTGACAGATGAGCTACCC-----TCACTGACACCTTG----GGCTTACAGAT----------------------------CTGTGCAGCACTGATCAG-ACACTGGACTTCAAGTATGTTTTCCCCACCCTTCCTTCACAACTCTAGGACCTT--T
i mm10.chr8                C 0 I 765
s canFam3.chr16             17936733 373 -  59632846 GGGCCTGCTGATTTTAAGTGTCATATCCTAGGGCTTAGTCTATTG-AAACACCCTGATAATGGATCCAACCGCACTTCAGAACAATCCACCCACTAGGTCTCAGCTGGACTGGCTCATTACAAAAATTCGTAATCATTCTGTGTATGGATTCAGAGTGCACCAGCAACTGAGGTGCCAGCAAAAAGCAATATTATTTTGTTAATCTCCAAGCAACTCAGAGGCAGA-GTCATGGCAGATCTTCTGCAATTTGGGGGTCTTCATTCCATTCCATTTATATGTTGGACACATAGATTCAGTGAGGGACTGGGCCTCATTGAATAATGCACTGGATTTGGAATATGTTTTCCCTAAC---TTTTCCTAACTTCAGGCCCTT---
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198030522 12562 + 198332218 M

a score=29450.000000
s hg38.chr4_KI270925v1_alt    258515 19 +    555799 TTGTGCTTTATGTAAGCCC
s panTro4.chr4             192952514 19 + 193495092 TTGTGCTTTATGTAAGCCC
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183642356 19 + 184069350 ATGTGCTTTGTGTAAGCCC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189026306 19 + 189454096 ATGTGCTTTATGTAAGCCC
i macFas5.chr5             C 0 I 500
s papAnu2.chr5             178450014 19 + 178775436 ATGTGCTTTATGTAAGCCC
i papAnu2.chr5             C 0 I 422
s chlSab2.chr7             135390157 19 + 135778131 GTGTGCTTTATGTAAGCCC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190502610 15 - 190850796 GTGGACTT----TAAGCTC
i calJac3.chr3             C 0 I 616
s canFam3.chr16             17937106  9 -  59632846 ----------TGTAAGCCC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87629535 765 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198030522 12562 + 198332218 M

a score=3276.000000
s hg38.chr4_KI270925v1_alt    258534 1 +    555799 A
s panTro4.chr4             192952533 1 + 193495092 A
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183642375 1 + 184069350 A
i rheMac3.chr5             C 0 I 422
s macFas5.chr5             189026825 1 + 189454096 a
i macFas5.chr5             I 500 C 0
s papAnu2.chr5             178450455 1 + 178775436 A
i papAnu2.chr5             I 422 C 0
s chlSab2.chr7             135390176 1 + 135778131 A
i chlSab2.chr7             C 0 I 422
s calJac3.chr3             190503241 1 - 190850796 a
i calJac3.chr3             I 616 C 0
s mm10.chr8                 87630300 1 - 129401213 a
i mm10.chr8                I 765 C 0
s canFam3.chr16             17937115 1 -  59632846 A
i canFam3.chr16            C 0 I 616
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198030522 12562 + 198332218 M

a score=837661.000000
s hg38.chr4_KI270925v1_alt    258535 449 +    555799  
s panTro4.chr4             192952534 449 + 193495092  
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183642798 513 + 184069350  
i rheMac3.chr5             I 422 C 0
s macFas5.chr5             189026826 513 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178450456 515 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135390599 499 + 135778131  
i chlSab2.chr7             I 422 C 0
s calJac3.chr3             190503242 430 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87630301 437 - 129401213  
i mm10.chr8                C 0 I 554
s canFam3.chr16             17937732 441 -  59632846  
i canFam3.chr16            I 616 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198030522 12562 + 198332218 M

a score=710835.000000
s hg38.chr4_KI270925v1_alt    258984 398 +    555799 TAAAAAGTCAGAAGCCTTTCGAGTTACAGAAGTAACTCCCTGCCACCCCTGCCTGCCA-CATAAAAGAAGGGAGAAGACTGTCTTATTTTTCCCTTCTAATTCATTGACCCACTTCTCTTTTTTAACTTAAAAAGA-CCATGCATAATTTGAAAAGTCATGGGTCTCAGCATTTCCCAAACTTC-----AGAAATTAGG-GGAA-ATTGAAGA--TGATATTTAGTTGAGTGATTTCCTCTGTTTCCCCATAAACCTTATCGCTTATGACTTCAGGAGACACACAGCATCACT-TGGTGGCGTA--GGCTTTCTCACCCTATGGCACTGAGCTGTCCTTGATAGCCT-CCCCCCATGCTCTGGCTCTCCTGCTCCAGAGCCCCTCATAAAATAAACAAAAACCAAAACCCTGT
s panTro4.chr4             192952983 398 + 193495092 TAAAAAGTCAGAAGCCTTTCGAGTTACAGAAGTAACTCCCTGCCACCCCTGCCTGCCA-CATAAAAGAAGGGAGAAGACTGTCTTATTTTTCCCTTCTAATTCATTGACCCACTTCTCTTTTTTAACTTAAAAAGA-CCATGCGTAATTTGAAAAGTCATGGGTCTCAGCATTTCCCAAACTTC-----AGAAATTAGG-GGAA-ATTGAAGA--TGATATTTAGTTGAGTGATTTCCTCTGTTTCCCTATAAACCTTATCGCTTATGACTTCAGGAGACACACAGCATCACT-TGGTGGCGTA--GGCTTTCTCACCCTATGGCACTGAGCTGTCCTTGATAGCCT-CCCCCCATGCTCTGGCTCTCCTACTCCAGAGCCCCTCATAAAATAAACAAAAACCAAAACCCTGT
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183643311 394 + 184069350 TAAAAAATCAGAAGCCTTTCGAGTTACACAAGTAACTCCCTGCCACCCCTGCCTGCCA-CATAAAAGAAGGGAGAAGACTGTCTTATGTTTCCCTTCTGATTCATCGACCCACTTCTCTTTTTTAACTTAAAAAGA-CCATGCATCCTTTGAGAAGTCATGGGTCTCAGCATTTCCCAAACTTC-----GGAGATTAGG-GGAA-ACTGCAGA--TGATATTTACTGGAGTGATGGCCTTTGTTTCCCCATAAACCTTATTGCTTATGACTTCAGGAGACACACAGCATCACC-TGGT---GTA--GGCTTTCGCACCCTAAGGCACTGAGCTGTCCTTGACAGCA--CCCCCCACGCTCTGGCTCTCCTGGTCCGGAGCCTCTCACAAAACAAACAAAAACTAAAACCCTCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189027339 394 + 189454096 TAAAAAATCAGAAGCCTTTCGAGTTACACAAGTAACTCCCTGCCACCCCTGCCTGCCA-CATAAAAGAAGGGAGAAGACTGTCTTATGTTTCCCTTCTGATTCATCGACCCACTTCTCTTTTTTAACTTAAAAAGA-CCATGCCTCCTTTGAGAAGTCAAGGGTCTCAGCATTTCCCAAACTTC-----GGAGATTAGG-GGAA-ACTGCAGA--TGATATTTACTGGAGTGATGGCCTTTGTTTCCCCATAAACCTTATTGCTTATGACTTCGGGAGACACACAGCATCACC-TGGT---GTA--GGCTTTCGCACCCTAAGGCACTGAGCTGTCCTTGACAGCA--CCCCCCACGCTCTGGCTCTCCTGGTCCGGAGCCTCTCACAAAACAAACAAAAACTAAAACCCTCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178450971 394 + 178775436 taaaaaatcagaagccTTTCGAGTTACACAAGTAACTCCCTGCCACCCCTGCCTGCCA-CATAAAAGAAGGGAGAAGACTGTCTTATGTTTCCCTTCTGATTCATCGACCCACTtctcttttttaacttaaaaaga-cCATGCATCATTTGAGAAGTCATGCGtctcagcatttcccaaacttc-----gGAGATTAGG-GGAA-ACTGCAGA--TGATATTTACTGGAGTGATGGCCTTTGTTTCCCCATAAACCTTATTGCTTATGACTTCAGGAGACACACAGCATCACC-TGGT---GTA--GGCTTTTGCACCCTAAGGCACTGAGCTGTCCTTGACAGCA--CCCCCCACGCTCTGGCTCTCCTGCTCCAGAGCctctcacaaaacaaacaaaaaccaaaaccctcT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135391098 377 + 135778131 ---------------CTTTCGAGTTACACAAGTAACT-CCTGCC-CCCCTGCCTGCCA-CATAAAAGAAGGGAGAAGACTGTCGTATGTTTCCCTTCTGATTCTTCGACACACTTCTCTTTTTTAACTTAAAAAGA-CCATGCATCGTTTGAGAAGTCATGGGTCTCAGCATTTCCCAAACTTC-----GGAGATTAGG-GGAA-ACTGCAGA--TGGTATTTACTGGAGTGATGGCCTTTGTTTCCCCATAAACCTTATTGCTTATGACTTCAGGAGACACACAGCATCACC-TGGT---GTA--GGCTTTCGCACCCTAAGGCACTGAGCTGTCTTTGACAGCA--CCCCCCACGCTCTGGCTCTCCTGCTCCAGAGCCTCTCACAAAACAAACAAAAACCAAAACCCTCT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190503672 366 - 190850796 TAAAAAATCAGACGCCTTTTGAGTTACAGAAGTAACTCCCTGCCATCCCTGCCTGCCA-CATAAAAGAAGGGAGAAGATTGTGTTGTTTTTCCCAAACTATGCATGG--------------------TCATTAAGC-CCATGCAGAGTTCGAAAACTCCTGGGTCTCAGCATGACCCAAACTTTGTGCGGGAAACTAGG-GGAA-ATTGAAGA-----TATCTAC--------TTTCCTGTGTTTCCCC--AGACCTTCTCTCTAACGACTTCAGAAAACACACAGCATCACC-TGGC---ATGGCGGATTCATCACCGCA-GGCAGAAAGCTGTCCTTGACAGCT--TCCCCCACGCTCTGGCTCTCCTGCTCCAGAGCCTCTCACAAAACAAAGGAAAAAC-AAACCCTGT
i calJac3.chr3             C 0 I 4
s mm10.chr8                 87631292 370 - 129401213 taaaaatatGAGGAACTTTTGAATCATACAAGTAACTCTCTAGCACCTCTACATGCTA-CATATAAA-------------GTCTTATTTTTCTCTTCTAACTCACCAACCTAGTTTTATTTATTAAC-CATAAAAA-ACATACATGCTTTACAGG---AAGAGTATGAGCACTACCAATATTCTATGCAGAAAACTGGGAGGAA-ATTAAAGAATAGATATTT-TTCCAGTGCTTTCTCATTTCTCACAAT--GCCATGCTCTCTATTGGGTGATATGGCAAATAATATCACT-GGACTTTATA--AAATTCTGTAACACTCAGTATTGAGTGGTCCTCACCAGTGTCCCTCCTAGGTTCTGACCCTTCTCCT-CAGAGCCTCTAACAA---AAGCAAAA-------------
i mm10.chr8                I 554 C 0
s canFam3.chr16             17938173 379 -  59632846 AAAAAAATCAGAGGCCTTTTAAATTATACAAGTAACTTCCTACCACCCCTGCCTGCCACCATAAAAGAAATA----------CCTATTTCTCCCTTCTAATTCATCATACCACTTTTCTCTTTTACCTTAAAAAAAGACATGTACATTTTTCAAAGTCATAGATCTCAGCACTATCCATACTTTGGGCAGGAAATCAGA-GGAATATTGAAGA--TAATGTTT-CTTCAGTGCTTTTTCACCTTTTCCAAT--GTCCTATCCTTTATTCCTTCAGGTGACATACAGCATTGCCATGGTTTTCTA--GAGTTTCTTAAAATAAGGTATCAAGTTGTCCTTGCCAGCATCACTTCTATGTTCTAGTCCTCCTCCCCTGGGGTCTCTACCAA---ATGCTAAA-------------
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198030522 12562 + 198332218 M

a score=4673.000000
s hg38.chr4_KI270925v1_alt    259382 4 +    555799 TCTA
s panTro4.chr4             192953381 4 + 193495092 TCTA
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183643705 4 + 184069350 TCTG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189027733 4 + 189454096 TCTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178451365 4 + 178775436 TCTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135391475 4 + 135778131 TCTG
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87631662 0 - 129401213 C
e canFam3.chr16             17938552 0 -  59632846 C
e calJac3.chr3             190504038 4 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198030522 12562 + 198332218 M

a score=28210.000000
s hg38.chr4_KI270925v1_alt    259386 15 +    555799 TACCTATTCTATAGG
s panTro4.chr4             192953385 15 + 193495092 TACCTATTCTATAGG
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183643709 15 + 184069350 AACCTTTTCTACAGG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189027737 15 + 189454096 TACCTTTTCTACAGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178451369 15 + 178775436 TACCTTTTCTACAGG
i papAnu2.chr5             C 0 I 3
s chlSab2.chr7             135391479 15 + 135778131 TCCCTTTTCTACAGG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190504042 15 - 190850796 TAACTATTCTACAGA
i calJac3.chr3             I 4 C 0
s mm10.chr8                 87631662 11 - 129401213 ----TATCCCATAGG
i mm10.chr8                C 0 C 0
s canFam3.chr16             17938552 11 -  59632846 ----TATTCTTTAGG
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198030522 12562 + 198332218 M

a score=4466.000000
s hg38.chr4_KI270925v1_alt    259401 3 +    555799 ACC
s panTro4.chr4             192953400 3 + 193495092 ACC
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183643724 3 + 184069350 ACC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189027752 3 + 189454096 ACC
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135391494 3 + 135778131 ACC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190504057 3 - 190850796 ACC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87631673 3 - 129401213 ACA
i mm10.chr8                C 0 C 0
s canFam3.chr16             17938563 3 -  59632846 ATG
i canFam3.chr16            C 0 C 0
e papAnu2.chr5             178451384 3 + 178775436 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198030522 12562 + 198332218 M

a score=66091.000000
s hg38.chr4_KI270925v1_alt    259404 38 +    555799 CGCCGGCATACACCCAGGCACTAGGTGTGATGAGATGG
s panTro4.chr4             192953403 38 + 193495092 CACCGGCATACACCCAGGCACTAGGTGTGATGAGATGG
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183643727 38 + 184069350 CGCCGGCATAGACCCAGGCACTAGGAGTGATGAGATGG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189027755 38 + 189454096 CGCCGGCATAGACCCAGGCACTAGGAGTGATGAGATGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178451387 38 + 178775436 CGCCGGCATAGACCCAGGCACTAGGAGTGATGAGATGG
i papAnu2.chr5             I 3 C 0
s chlSab2.chr7             135391497 38 + 135778131 CGCCAGCATAGACCCAGGCACTAGGAGTGATGAGATGG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190504060 38 - 190850796 TGCCTGCCTAGACTCAGGCATTAGGTGTGATGAGATGG
i calJac3.chr3             C 0 T 60
s mm10.chr8                 87631676 25 - 129401213 AGCCTGAGTGGCCACAGGCATCAGA-------------
i mm10.chr8                C 0 C 0
s canFam3.chr16             17938566 25 -  59632846 TGCCTGAGTGGCCCCAGATGTTAGA-------------
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198030522 12562 + 198332218 M

a score=96.000000
s hg38.chr4_KI270925v1_alt    259442 7 +    555799 GCTGAT--A
s panTro4.chr4             192953441 7 + 193495092 GCTGAT--A
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183643765 6 + 184069350 GCTGAT---
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189027793 6 + 189454096 GCTGAT---
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178451425 7 + 178775436 GCTGATA--
i papAnu2.chr5             C 0 T 48
s chlSab2.chr7             135391535 7 + 135778131 GCTGAT-A-
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190504038 6 - 190850796 GCTGTA---
i calJac3.chr3             T 60 C 0
e mm10.chr8                 87631701 0 - 129401213 C
e canFam3.chr16             17938591 0 -  59632846 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198030522 12562 + 198332218 M

a score=761.000000
s hg38.chr4_KI270925v1_alt    259449 13 +    555799 CCTATTCTATAGG
s calJac3.chr3             190504044 13 - 190850796 ACTATTCTACAGA
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87631701  0 - 129401213 C
e canFam3.chr16             17938591  0 -  59632846 C
e chlSab2.chr7             135391542  0 + 135778131 C
e papAnu2.chr5             178451432 48 + 178775436 T
e macFas5.chr5             189027799  0 + 189454096 C
e rheMac3.chr5             183643771  0 + 184069350 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198030522 12562 + 198332218 M
e panTro4.chr4             192953448  0 + 193495092 C

a score=564654.000000
s hg38.chr4_KI270925v1_alt    259462 368 +    555799 ACCCGCCGGCATACACCCAGGCACTAGGTGTGATGAGATGGGCTGACAGAGGCTTAATATGTTCCTCC--------------ATGTACTAGCAGGTGACTCT--GAGACCC----------AA------------AAGAACTTGTCATAGTATACCATAATTGGCATAATATCAGACTAGAGAGAAAACT-CTAGATATTCAGGGGGCCAAATCAGCTTTCTGTCAATGTCTAAATTATGCCAAAATAGCCATCCTGCCTCTG--GGGAAGACCAGTC----CCAGGCCTAGCTGACAATAGATTTCATATTCCCTCTCCACTGGAATGTAGAGACATCTCAGAGAGAGAGAGAGAGGATGGTATGGACCACA-------GCACACTGTTAACATTT---ATGTTGATGGCttttttgttgtt
s panTro4.chr4             192953448 322 + 193495092 ------------------------------------------------GAGGCTTAATATGTTCCTCC--------------ATGTACCAGCAGGTGACTCT--GAGACCC----------AA------------AAGAACTTGTCATAGTATACCATAATTGGCATAATATCAGACTAAAGAGAAAACT-CTAGATATTCAGGGGGCCAAATCAGCTTTCTGTCAATGTCTAAATTATGCCAAAATAGCCATCCTGCCTCTGTGGGGAAGACCAGTC----CCAGACCTAGCTGACAATAGATTTCATATTCCCTCTCCACTGGAATGTAGAGACATCTCAGAGAGAGAGAGAGAGGATGGTATGGACCACA-------GCACACTGTTAACATTT---ATGTTGATGGtttttttgttgtt
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183643771 342 + 184069350 -----------------------------------------------AAAGGCTTAATATGTTCCTCC--------------ATGTATTAGCAGGTGACTCT--GAGATCCCCCCCCTC--AAAAAAAAGATGACAAGAACTTGTCATAGTATACTAGAATTGGCATAATATCAGACTGGAGAGAAAACT-CTAGATATTCAGGGGGCAAAACCTGCTTTCTGTCAATGTCTAAATTATGCCAAAATAGCCATCCTGCCTCTA--GGGCAGACACGTC----CCAGACCTAGCTGACAATAGATCTCACATTCCCTCTCCACTGGAATGTAGAGACACCTC--AGAGAGGAGGAGAGGATGGTATGAACCTCA-------GCACACTGTTAACAGTGATAATGTTGATGGCttttttgttgtt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189027799 343 + 189454096 -----------------------------------------------AAAGGCTTAATATGTTCCTCC--------------ATGTATTAGCAGGTGACTCT--GAGATCCCCCCCCTCA-AAAAAAAAGATGACAAGAACTTGTCATAGTATACTAGAATTGGCATAATATCAGACTGGAGAGAAAACT-CTAGATATTCAGGGGGCAAAACCTGCTTTCTGTCAATGTCTAAATTATGCCAAAATAGCCATCCTGCCTCTA--GGGCAGACACGTC----CCAGACCTAGCTGACAATAGATCTCACATTCCCTCTCCACTGGAATGTAGAGACACCTC--AGAGAGGAGGAGAGGATGGTATGAACCTCA-------GCACACTGTTAACAGTGATAATGTTGATGGCttttttgttgtt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178451384 386 + 178775436 ACCCGCCGGCATAGACCCAGGCACTAGGAGTGATGAGATGGGCTGATAAAGGCTTAACATGTTCCCCC--------------ATGTATTAGCAGGTGACTCT--GAGACCTCCCCCCTCG-aaaaaaaagatgacaagaaCTTGTTATA-TATACCAGAATTGGC---ATATCAGACTGGAGAGAAAACT-CTAGATGTTCAGGGGGCAAAACCAGCTTTCTGTCAATGTCTAAATTACGCCAAAATAGCCATCCTGCCTCTA--GGGCAGACACGTC----CCAGACCTAGCTGACAATAGATCTCACATTCCCTCTCCACTGGAATGTAGAGACATCTC--AGAGAGAAGAAGAGGATGGTATGAACCTCA-------GCACACTGTTAACAGTGATAATGTTgatggcttttttgttgtt
i papAnu2.chr5             T 48 C 0
s chlSab2.chr7             135391542 343 + 135778131 ------------------------------------------------AAGGCTTAATATGTTCCTCC--------------ATGTATTAGCAGGTGACTCT--GAGACCAACCCCCTCGAAAAAAAAAGATGACAAGAACTTGTCATAGTATACTAGAATTGGCATAGGATCAGACTGGAGAGAAAACT-CTAGATATTCAGGGGGCAAAACCAGCTTTCTGTCAATGTCTAAATTGTGCCAAAATAGCCATCCTGCCTCTA--GGGAAGACACGTC----CCAGACCTAGCTGACAATAGATTTCACATTCCCTCTCCACTGGAATGTAGAGACATCTC--AGAGAGAAGGAGAGGATGGTATGAACCTCA-------GCACACTGTTAACAATGATAATGTTGATGGCttttttgttgtt
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190504057 331 - 190850796 ACCTGCCTGCCTAGACTCAGGCATTAGGTGTGATGAGATGGGTTGACAGAGGCTTCATATCTTCCTCCTTCCAAGTATATTTATGTATCAGCAGGTGACTCT--GAGACCC----------AA------------AAGAACTTGTCATAGTATAGAACAATTGGCATA--ATCAGA-------------------------------CAAAAGGAGCTTTCTACCAATGTCCAAATTATGCCAAAATAGGCATCCCGCCTCGA--GGGAAGACCAGTC----CCGGATCTAGCCGACAATAGGTTTCCCATTCCGTCTCCAGTG-------------TCTC--AGAGAGAA----AGGATGGCA-GGACCTCA-------GCACACTCTTAACAATGTTTATGTCGACAGCGttttt-ttg-t
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87631701 346 - 129401213 -------------------------AGCTGTGGTGAGAGAAGCCCACAGAGACTTTGTGTGTTTATTCTTGCAAGTATATTTATGTGTTAGCAGGTAATGGA--GAGATTT----------GAAGGG--------AAGCATCAGTCAGA-TAGACCATGACTAGCATAATAGCAGACTAGAGGAAAAACTGCCGGATAATAAAGGGATACAATTAACTCTTTTCCCATGTTCAGATCACACTAAAAT----ATTAAGTCTGTA--G----GACCCGTT----CCAGAGCTAGCTGA-------TGTCACACTC---TTTCGGTGGAATGCAGGAACATTTG--ACAGA-----AGTGGATTGTGTAAGCCACACTATTTTTCACAGCATCAGCAACACCTGGGCTGGATGTTTTTTTGTTTTT
i mm10.chr8                C 0 I 161
s canFam3.chr16             17938591 361 -  59632846 -------------------------AAGTATAGTGAGAAGAGTCAATGGAGGC-TATTACATTATTGCTTGCAAGTGGATTTATGCATTAGCAGGTGATTCTGGGAGACCT----------GGAGG---------AATCATCAATCATAGTATG--ATGATTGGCATAGCATCAGACTGGAGTAAAGACT-ATAGATACTTAGGGGGCAAAACCAGCTTTTTGTCAATGTCCAGATTGTGCCAACATAGCCATCTATCTACTA--GGTAAGATCAGTCGGTATGAGACACTGCTGACAAT-GATCTCACATTCCCTCTACATTGGCACATAGGGACATCGC--AGTGAGGG--AGAGGATGGTATACACCACA-------CCCTGCTATCAATAACATTTATGTTAGAGGCtttttttttttt
i canFam3.chr16            C 0 I 126
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198030522 12562 + 198332218 M

a score=114829.000000
s hg38.chr4_KI270925v1_alt    259830 71 +    555799 taagagataagaaggtctctctctgtcatctgcactggagtgcagtggtgaaatc-atggctcacagcagcc
s panTro4.chr4             192953770 71 + 193495092 taagagacaagaaggtctctctctgtcatctgcactggagtgcagtggtgaaatc-atggctcacagcagcc
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183644113 72 + 184069350 taagagacaagaaggtctcgctctgtcatccgcaatggagtgcagtggtgaaatcaatggctccaagcagcc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189028142 72 + 189454096 taagagacaagaaggtctcgctctgtcatccgcaatggagtgcagtggtgaaatcaatggctccaagcagcc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178451770 72 + 178775436 taagggATAagaaggtctcgctctgtcatccgcaatggagtgcagtggtgaaatcaatGGCTCAaagtagcc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135391885 72 + 135778131 taagagataagaaggtctcgctctgtcatccgcaatggagtgcagtggtgaaatcaatggctcaaagtagcc
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190504388 71 - 190850796 taagatataagaagctctcgctctgtcgtcagcactggagtgcagtggtgaaatt-tgggctcacagcatcc
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87632047 161 - 129401213 I
e canFam3.chr16             17938952 126 -  59632846 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198030522 12562 + 198332218 M

a score=58395.000000
s hg38.chr4_KI270925v1_alt    259901 39 +    555799 ttgaactcctgggctcaagt---gaactctcaa------------agtgttggg
s panTro4.chr4             192953841 39 + 193495092 ttgaactcctgggctcaagt---gaactctcaa------------agtgttggg
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183644185 39 + 184069350 ttgaactcctgggcacatgt---ggtctcccaa------------agtgttggg
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189028214 39 + 189454096 ttgaactcctgggcacacgt---ggtctcccaa------------agtgttggg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178451842 39 + 178775436 ttgaactcctgggcacacgt---ggtctcccaa------------agtgttggg
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135391957 39 + 135778131 ttgaactcctgggcacacgt---ggtctcccaa------------agtgttggg
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190504459 51 - 190850796 tggaactcctgggttcaagt---gatcctccggcctgggcctcccagtgctggg
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87632208 42 - 129401213 gtggattccagggatcaagcataggtcatcagg------------tgggctagt
i mm10.chr8                I 161 C 0
e canFam3.chr16             17938952 126 -  59632846 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198030522 12562 + 198332218 M

a score=1217927.000000
s hg38.chr4_KI270925v1_alt    259940 647 +    555799  
s panTro4.chr4             192953880 644 + 193495092  
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183644224 649 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189028253 648 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178451881 648 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135391996 645 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190504510 648 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87632250 618 - 129401213  
i mm10.chr8                C 0 I 1255
s canFam3.chr16             17939078 688 -  59632846  
i canFam3.chr16            I 126 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198030522 12562 + 198332218 M

a score=268463.000000
s hg38.chr4_KI270925v1_alt    260587 153 +    555799 TGGACAAAGTCTGGAAATTAATGTTTTAGTGGCATTTGAGCTCCGTTGTGGAGGATGGCAGATGTCATCC--GGGCTACAAACCTGTGCTGACAAAGGCACAGGTTTGTTATGAATGAAACCTGGTCCCAGGGTGGAAGGACACCAGAATCACTG
s panTro4.chr4             192954524 153 + 193495092 TGGACAAAGTCTGGAAATTAATGTTTTAGTGGCATTTGAGCTCCGTTGTGGAGGATGGCAGATGTCATCC--GGGCTACAAACCTGTGCTGACAAAGGCACAGGTTTGTTATGAATGAAACCTGGTCCCAGGGTGGAAGGACACCAGAGTCACTG
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183644873 145 + 184069350 TGGACAAAGTCTGGGAATAAGTGTATTGGTGGCATTTGAGCTCTGTCGTGGAGGACGGCAGATATCATTC--GGGCTACAAGCCTGTGCTAATGAAGGCAC-------TGATGAATGAAACCTGAT-CCGGAGTGGAAGGACACCAGAGTCACTG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189028901 145 + 189454096 TGGACAAAGTCTGGGAATAAGTGTATTGGTGGCATTTGAGCTCTGTCGTGGAGGATGGCAGATATCATTC--GGGCTACAAGCCTGTGCTAATGAAGGCAC-------TGATGAATGAAACCTGAT-CCGGAGTGGAAGGACACCAGAGTCACTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178452529 147 + 178775436 tggACAAAGTCTGGGAATAAGTGTATTGGTGGCATTTGAGCTCTGTCGTGGAGGATGGCAGATATCATTCGGGGGCTACAAGCCTGTGCTAATGAAGGCAC-------TGATGAATGAAACCTGAT-CCGGGGTGGAAGGACACCAGAGTCACTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135392641 145 + 135778131 TGGACAAAGTCTGGGAATAAGTGTATTGGTGGCATTTGAGCTCTGTCGTGGAGGATGGCAGATATCATTC--GGGCTACAAGCCTGTGCTAATGAAGGCAC-------TGATGAATGAAACCTGAT-CTGGGGTGGAAGGACACCAGAGTCACTG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190505158 135 - 190850796 AGGACAAGG-CTGGAAATACGTGTTCTGGTGGCATCTGAGCTCCATCGTGGAGGATGGCAGCTGTCATCC--GGGCTACAAACCTGTGCTGACAAAGGCAC-------TGCTGAACGA---------CC-GGGCGGGAGGACACCAGAGTCACCG
i calJac3.chr3             C 0 I 3
s canFam3.chr16             17939766 146 -  59632846 AGGACAAAATAAAAGAATGTATATTTGGGGGGCATTTGAGCTCTACTTTGGAGATAGAAGGAGATCATTT--AGGCTACAAACCTGTGTTAATAAAGACAT-------TGAGGAATGAAGCCTGATTGTGAGATGGACGGACATCAGAGTTACTG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87632868 1255 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198030522 12562 + 198332218 M

a score=955597.000000
s hg38.chr4_KI270925v1_alt    260740 678 +    555799  
s panTro4.chr4             192954677 723 + 193495092  
i panTro4.chr4             C 0 I 110
s rheMac3.chr5             183645018 727 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189029046 727 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178452676 681 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135392786 704 + 135778131  
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17939912 635 -  59632846  
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87632868 1255 - 129401213 I
e calJac3.chr3             190505293   3 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198030522 12562 + 198332218 M

a score=66767.000000
s hg38.chr4_KI270925v1_alt    261418 70 +    555799 TGAAAGAATATTTGCATAACCAGCTCACAGAGCAGTTTTTCCTGTTTGTCATCTGCTTCTGGGTAACCTA--
s rheMac3.chr5             183645745 68 + 184069350 TGAAAAAATA-TTGCATAACCAGCTCACAGAGCAGTTTTT-CTGTGTGTCATCTGCTTCTTGGTAACCTA--
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189029773 68 + 189454096 TGAAAGAATA-TTGCATAACCAGCTCACAGAGCAGTTTTT-CTGTGTGTCATCTGCTTCTTGGTAACCTA--
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178453357 68 + 178775436 TGAAAGAATA-TTGCATAACCagctcacagagcagttttt-ctgTGTGTCATCTGCTTCTTGGTAACCTA--
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135393490 69 + 135778131 TGAAAGAATA-TTGCATAACCAGCTCACAGAGCAGTTTTTCCTGTGTGTCATCTGCTTCTTGGTAACCTA--
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17940547 68 -  59632846 TGAGAGAATG-TTTAATAACTAGCTCACAAGTTGCTTTATTCTGTTTATTTCCTGCTTCTTAATA---TATA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87632868 1255 - 129401213 I
e calJac3.chr3             190505293  3 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198030522 12562 + 198332218 M
e panTro4.chr4             192955400 110 + 193495092 I

a score=515670.000000
s hg38.chr4_KI270925v1_alt    261488 349 +    555799 GACTCCTTTAAGCTCTGGATTTGAATGAAATTTGAATGCTGTAGGCCCCTTCAAGTACACCA----------------------------------------------------------------------------------------------------TTTTGGGATT----CAAAGACTGTTTATTTCTGGG-GTTTCTGAGAAGCAAGTCAGCTTGCTCTGGGGAGCCACAGCTGATTCTGCCTTTGGGAAGAGTGAAGTTACCAAGACT---AAAAGCTGGATTCTGGGGAACACAGGTGGGGTGACCAGGGACTGTGTTGAGAACAAAGAGCCAGCATCCAACAGGGACTCCAGAAGGCTGAGAATCTGTCCCCAACCAGACGTTGCAGCTCAGGAAGAGCTGTAAGCTGCCCTGCTTCTCCCATGCCCACTTAGAAGGAAGCTTCATC
s panTro4.chr4             192955510 349 + 193495092 GACTCCTTTAAGCTCTGGATTTCAATGAAATTTGAATGGTGTAGGCCCCTCCAAGTACACCA----------------------------------------------------------------------------------------------------TTTTGGGATT----CAAAGACTGTTTATTTCTGGG-GTTTCTGAGAAGCAAGTCAGCTTGCTCTGGGGAGCCACAGCTGATTCTGTCTTTGGGAAGAGTGAAGTTACCAAGACT---AAAAGCTGGATTCTGGGGAACACAGGTGGGGTGACCAGGGACTGTGTTGAGAACAAAGAGCCAGCATCCAACAGGGACTCCAGAAGGCTGAGAATCTGTCCCCAACCAGACGTTGCAGCTCAGTAAGAGCTGTAAGCTGCCCTGCTTCTCCCATGCCCACTTAGAAGGAAGCTTCATC
i panTro4.chr4             I 110 C 0
s rheMac3.chr5             183645813 349 + 184069350 GACTCCTTTAAGCCCTGGATTTGAATGAAATTTGAATGTTGTAGGCACCTCCAAGTACACCA----------------------------------------------------------------------------------------------------TTTTGGGACT----CAAAGACTGTTTATTTCTGGG-GTTTCTGAGAAGCAAGTCAGCTTGCTCTGGGGAGCCACAGCTGATTCTGTCTTTGGGAAGAGTGAAATTACCAAGACT---AAAAGCTGGATTCTGGGGAACACAGGGGGCGTGACCAGGGACTGTGTTAAGAACAAAAAGCCAGCATCCAACAGGGACTCCAGAAGGCTGAGAATCTGTCCCCAACCAAACACTGCAGCTCAGGAAGAGCTGTAAGCTGCCCTGCTTCTCCCACGCCCACTTAGAAGGAAGCTTCATC
i rheMac3.chr5             C 0 I 60
s macFas5.chr5             189029841 327 + 189454096 GACTCTTTTAAGCCCTGGATTTGAATGAAATTTGAATGTTGTAGGCACCTCCAAGTACACCA----------------------------------------------------------------------------------------------------TTTTGGGACT----CAAAGACTGTTTATTTCTGGG-GTTTCTGAGAAGCAAGTCAGCTTGCTCTGGGGAGCCACAGCTGATTCTGTCTTTGGGAAGAGTGAAATTACCAAGACT---AAAAGCTGGATTCTGGGGAACACAGGGGGCGTGACCAGGGACTGTGTTAAGAACAAAAAGCCAGCATCCAACAGGGACTCCAGAAGGCTGAGAATCTGTCCCCAACCAAACACTGCAGCTCAGGAAGAGCTGTAAGCTGCCCTGCTTCTCCCACGC----------------------
i macFas5.chr5             C 0 I 2
s papAnu2.chr5             178453425 349 + 178775436 GACTCCTTTAAGCCCTGGATTTGAATGAAATTCGAATGTTGTAGGCACCTCCAAGTACACCA----------------------------------------------------------------------------------------------------TTTTGGGACT----CAAAGACTGTTTATTTCTGGG-GTTTCTAAGAAGCAAGTCAGCTTGCTCTGGGGAGCCACAGCTGATTCTGTCTTTGGGAAGAGTGAAGTTACCAAGACT---AAAAGCTGGATTCTGGGGAACACAGGGGGCGTGACCAGGGACTGTGTTGAGAACAAAAAGCCAGCATCCAACAGGGACTCCAGAAGGCTGAGAATCTGTCCCCAACCAAACACTGCAGCTCAGGAAGAGCTGTAAGCTGCCCTGCTTCTCCCACGCCCACTTAGAAGGAAGCTTCATC
i papAnu2.chr5             C 0 I 309
s chlSab2.chr7             135393559 349 + 135778131 GACTCCTTTAAGCCGTGGATTTGAATGAAATTTGAATGTTGTAGGCACCTCTAAGTACACCA----------------------------------------------------------------------------------------------------TTTTGGGACT----CAAAGGCTGTTTATTTCTGGG-GTTTCTGAGAAGCAAGTCAGCTTGCTCTGGGGAGCCACAGCTGATTCTGTCTTTGGGAAGAGTGAAGTTACCAAGACT---AAAAGCTGGATTCTGGGGAACACAGGGGGCGTGACCAGGGACTGTGTTGAGAATAAAAAGCCAGCATCCAACAGGGACTCCAGAAGGCTGAGAATCTGTCCCCAACCAAACACTGCAGCTCAGGAAGAGCTGTAAGCTGCCCTGCTTCTCCCACACCCACTTAGAAGGAAGCTTCATC
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17940615 427 -  59632846 AAGCCATTTAAACTCTGGAACTGAAAGAAATTAAAATGCTGTAGGTCCCTCTATAGATGCCAAGGAAAACTGTGGAAATCTCCCAAGTTGGGTCTGGCTGAGCAAGTCATAAGCCTCATGACTGCCTCTGGAGTGCCTAATTCCTGGCATCACTCCAGTGGGTTCCAGGACTTGAGTAAAGACTGTTTATTTCTGGGAGTATCTAAGAAACAACTTTGGTTGTTCTGAGGAGCCACCATTGATTCTGTCTTTGGGGA-----AAGTTACCAAGACTTCCAAAA--TGGTTCCTGGAGAACAGTGCTAGAGCTGCTGGGGACTG-ATTAAGAATAAACAGCCAACACCAAACAAGGACTTGAGAAGGGTGAGAATCTGTCC----CAAGACATTGAAGCTCAG---------------GCCTTA---CTCCAATGCCCACTTAGAACCAATTACAATC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87632868 1255 - 129401213 I
e calJac3.chr3             190505293   3 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198030522 12562 + 198332218 M

a score=440946.000000
s hg38.chr4_KI270925v1_alt    261837 339 +    555799 AAGAAAC---------------------------------CTTGGTTTC---------TATAAGCACGAGG--ATGAGGCTACACA--------------------AGAA---------------------------GAACATTGCTTTGTTCAAAGGATCTTCAACTTCTATCCCTTGCTCACCACAGTATGTGAACTAGGACCATTAAAACTACTCAACTCTTTCTTATTTGTAGTAACAACTTATTAATCACA---AGTTACATGTTCATTGATGGAGGCTATATATCT--ATAtatttt----attttatttcattttttatttttGCTAGGAGGAAGATG-TTAAAGGGCATGCACTAAAACATAAACACTATTTCAAAAACCCTAATAACTTCTCTCCTAAAATATTTCTATGGGAAGTAAATGCCAATTTGCT
s panTro4.chr4             192955859 341 + 193495092 AAGAAAC---------------------------------CTTGGTTTC---------TATAAGCACGAGG--ATGAGGCCACACA--------------------AGAA---------------------------GAACATTGCTTTGTTCAAAGGATCTTCAACTTCTATCCCTTGCTCACCACAGTATGTGAACTAGGACCATTAAAACTACTCAACTCTTTCTTATTTGTAGTAACAACTTATTAATCACA---AGTTACATGTTCATTGATGGAGGCTATATATCTCtatatatttt----attttatttcattttttatttttGCTAGGAGGAAGATA-TTAAAGGGCATGCACTAAAACATAAACACTATTTCAAAAACCCTAATAACTTCTCTCCTAAAATATTTCTATGGGAAGTAAATGCCAATTTGCT
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183646222 341 + 184069350 AAGAAAC---------------------------------CTTGGTTTC---------TGTAAGCACCAGC--ATGAGGCTACAC-----------------------AA---------------------------GAACACTGCTTTGCTC-AAGGATCTTCAACTTCTATCCCTCACTCACCACAGTATGTGAACTGGGACGATTAAAATTACTCAACCCTTTCTTATTTGTAGTAACAACGTATTAATCACA---AACTACATGTTCATTGATGGAAGCTACAGATCCCTGtatattttattaattttattttaGATTGTATTTTTGCGAGGAGACATATG-TTAAAGGGCATGCACTAAAACCTAAACACTATTTCAAAAGTCCTAACAACTTCTCTCCTAAAATATTTCTATAGGAAGTTAATGTTAATTTGCT
i rheMac3.chr5             I 60 C 0
s macFas5.chr5             189030170 341 + 189454096 AAGAAAC---------------------------------CTTGGTTTC---------TGTAAGTACCAGG--ATGAGGCTACAC-----------------------AA---------------------------GAACACTGCTTTGCTC-AAGGATCTTCAACTTCTATCCCTCACTCACCACAGTATGTGAACTGGGACGATTAAAATTACTCAACCCTTTCTTATTTGTAGTAACAACGTATTAATCACA---AACTACATGTTCATTGATGGAAGCTACAGATCCCTGTAtattttattaattttattttagattgtattttTGCGAGGAGACATATG-TTAAAGGGCATGCACTAAAACCTAAACACTATTTCAAAAGTCCTAACAACTTCTCTCCTAAAATATTTCTATAGGAAGTTAATGTTAATTTGCT
i macFas5.chr5             I 2 C 0
s papAnu2.chr5             178454083 341 + 178775436 aagaaag---------------------------------cttggtTTC---------TGTAAGCACCAGG--ATGAGGCTACAC-----------------------AA---------------------------GAACACTGCTTTGCTC-AAGGATCTTCAACTTCTATCCCTCACTCACCACAGTATGTGAACTGGGACGATTAAAATTACTCAACCCTTTCTTATTTGTAGTAACAACGTATTCATCACA---AACTACATGTTCACTGATGGAGGCTACAGATCCctgtatattttattgattttattttagattgtatttttGCAAGGAGACATATG-TTAAAGGGCATGCACTAAAAcataaacactattttaaaagtcCTAACGACTTCTCTCCTAAAATATTTCTATAGGAAGTTAATGTCAATTTGCT
i papAnu2.chr5             I 309 C 0
s chlSab2.chr7             135393908 341 + 135778131 AAGAACC---------------------------------CTTGGTTTC---------TGTAAGCACCAGG--ATGAGGCTACAC-----------------------AA---------------------------GAACACTGCTTTGCTC-AAGGATCTTCAACTTCTATCCCTCACTCACCACAGTATGTGAACTGGGACGATTAAAATTACTCAACCCTTTCTTATTTGCAGTAACAACATATTCATCACA---AACTACATGTTCATTGATGGAGGCTACAGATCCCTGTAtattttattgattttattttcgattgtattttTGCGAGGAGACATATG-TTAAAGGGCATGCACTAAAACACAAACACTATTTCAAAAGTCCTAACAACTTCTCTCCTAAAATATTTCTATAGGAAGTTAATGTTAATTTGCT
i chlSab2.chr7             C 0 I 101
s canFam3.chr16             17941042 416 -  59632846 AAggggcatctgggtggcccagttggttaagcatctgactcttgatttcagctcaggtcatgatctcagggtcatgagattgagccccatgtcaggcactgaccatggaatctgcttaagattctctctctcctcctgagcactgcctcactcAAAGTATCTTCAATTATTATCCCTAGTGCACTGTAACATGTGGACTGTGATCGCTGTAATTATTCAACCGTGTCTTAT----AGGAAC----TGTTAGTTGCAACTAATTATAAATTCA-TGATAGAAGCTATAGAT----ATCTTTTTT----ACTTTATTTTTG-TTTTATTTTTGTCAGAAGG-ATATATTTAAAAAGCATGCACTAATATGCAAAGA-TATTTCAAAGGCACTAAAAACT----CCCTAAGATGTATCTATGGGAAATAAAGGCCAATATGCT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87632868 1255 - 129401213 I
e calJac3.chr3             190505293   3 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198030522 12562 + 198332218 M

a score=10055.000000
s hg38.chr4_KI270925v1_alt    262176 10 +    555799 ACCATCTCCC
s panTro4.chr4             192956200 10 + 193495092 ACCATCTCCC
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183646563 10 + 184069350 GCCTTCTCCC
i rheMac3.chr5             C 0 I 163
s macFas5.chr5             189030511 10 + 189454096 GCCTTCTCCC
i macFas5.chr5             C 0 I 56
s papAnu2.chr5             178454424 10 + 178775436 GCCTTCCCCC
i papAnu2.chr5             C 0 I 2
s canFam3.chr16             17941458 10 -  59632846 ACCTTCCTCC
i canFam3.chr16            C 0 I 9
e mm10.chr8                 87632868 1255 - 129401213 I
e calJac3.chr3             190505293  3 - 190850796 I
e chlSab2.chr7             135394249 101 + 135778131 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198030522 12562 + 198332218 M

a score=323.000000
s hg38.chr4_KI270925v1_alt    262186 3 +    555799 GCA
s panTro4.chr4             192956210 3 + 193495092 TCA
i panTro4.chr4             C 0 C 0
s macFas5.chr5             189030577 3 + 189454096 ACT
i macFas5.chr5             I 56 C 0
s papAnu2.chr5             178454436 3 + 178775436 ACT
i papAnu2.chr5             I 2 C 0
s canFam3.chr16             17941477 3 -  59632846 ACA
i canFam3.chr16            I 9 C 0
e mm10.chr8                 87632868 1255 - 129401213 I
e calJac3.chr3             190505293 3 - 190850796 I
e chlSab2.chr7             135394249 101 + 135778131 I
e rheMac3.chr5             183646573 163 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198030522 12562 + 198332218 M

a score=13724.000000
s hg38.chr4_KI270925v1_alt    262189 36 +    555799 TGTGGATGCCTGTAAACA--ACACTGCCCACCACAAAC
s panTro4.chr4             192956213 36 + 193495092 TGTGGATGCCTGTAAACA--ACACTGCCCACCACAAAC
i panTro4.chr4             C 0 C 0
s macFas5.chr5             189030580 38 + 189454096 TGTAGAAGTCTGTGGACAATATACTACACACCACAGAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178454439 36 + 178775436 TGTGGATGCCTGTAAACA--ACACTACCCAACACAGAC
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87632868 1255 - 129401213 I
e canFam3.chr16             17941480  0 -  59632846 C
e calJac3.chr3             190505293  3 - 190850796 I
e chlSab2.chr7             135394249 101 + 135778131 I
e rheMac3.chr5             183646573 163 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198030522 12562 + 198332218 M

a score=61475.000000
s hg38.chr4_KI270925v1_alt    262225  68 +    555799 AGTATATTTAATGTGCCACCTTCTCCCTCACTTGTGGATGCCCATGGACA--ATACTACCCACTA------------------------------------------------------------------CAGAG
s panTro4.chr4             192956249 134 + 193495092 AGTATATTTAATATGCCACCTTCTCCCTCACTTGTGGATGCCCATGGACA--ATACTACCCACCAGAGAGTATATTCAATGTGCTACCTTCTCCCTCACTTGCAGATGGCTGTGGACTATACTACCCACCACAGAG
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183646736  68 + 184069350 AGTATATTCAATATGCTGCCTTCTCCCTCACTTGTGGATGCCTGTGGACA--ACACTACCCATCA------------------------------------------------------------------CAGAG
i rheMac3.chr5             I 163 C 0
s macFas5.chr5             189030618  66 + 189454096 AATATATTCAATACGCTACCTTCTCCCTCACTTGTGGAAGTCTGTGGACA--ATACTACAAAC--------------------------------------------------------------------CAGAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178454475  70 + 178775436 AGGATATTCAATATGCTGCCTTCACACTCACTTGTGGAAGTCTGTGGACAATATACTACACACCA------------------------------------------------------------------CAGAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135394350  68 + 135778131 AGTATATTCAATACGCTGCCTTCTCCCTCACTTGTGGATGCCCATGGACA--ACACTACCCACCA------------------------------------------------------------------CAGAG
i chlSab2.chr7             I 101 C 0
e mm10.chr8                 87632868 1255 - 129401213 I
e canFam3.chr16             17941480   0 -  59632846 C
e calJac3.chr3             190505293   3 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198030522 12562 + 198332218 M

a score=13920.000000
s hg38.chr4_KI270925v1_alt    262293 15 +    555799 AGTATATTCAATATG
s panTro4.chr4             192956383 15 + 193495092 AGTATATTCAATATG
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183646804 15 + 184069350 AGTATATTCAATATG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189030684 15 + 189454096 AGTATATTCAATATG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178454545 15 + 178775436 AGTATATTCAATATG
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87632868 1255 - 129401213 I
e canFam3.chr16             17941480  0 -  59632846 C
e calJac3.chr3             190505293  3 - 190850796 I
e chlSab2.chr7             135394418  0 + 135778131 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198030522 12562 + 198332218 M

a score=1746.000000
s hg38.chr4_KI270925v1_alt    262308 3 +    555799 CTG
s panTro4.chr4             192956398 3 + 193495092 CTG
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183646819 3 + 184069350 CTG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189030699 3 + 189454096 CTG
i macFas5.chr5             C 0 C 0
e mm10.chr8                 87632868 1255 - 129401213 I
e canFam3.chr16             17941480 0 -  59632846 C
e calJac3.chr3             190505293 3 - 190850796 I
e chlSab2.chr7             135394418 0 + 135778131 C
e papAnu2.chr5             178454560 0 + 178775436 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198030522 12562 + 198332218 M

a score=38299.000000
s hg38.chr4_KI270925v1_alt    262311 431 +    555799 Ctatgtccagaattggtgggttcttggactctctgacttcaagaatgaagccggggaccctcacagtgactgttacagtttctaaagacagtgcatccggaggttgttccttctgatgttcagacatgttgggagtttcttccatctggtggattcatggtctcgctggcttcaggagtgaagctgcagaccttcgcggtaagtgttacagctcttcaagtgacgcgtctggagttgttcattcct-----------------------tccggtgagttcgtggtctcactggtctcaggagagaagctgcagacctttgcggtgagtgttacagctcataaaggcagcgtggacccaaacattgagcagcagcaagatttattgcaaagagtgaaagaacaaactttccacagtgtcaatcaggaccctagcgggttgccactgctgcttgg
s panTro4.chr4             192956401 454 + 193495092 Ctatgtccagaattggtgggttcttggactctctgacttcaagaatgaagccggggaccctcgccatgactgttacagtttttaaagacagtgcatccggaatttgttccttctgatgttcagacatgttgggagtttcttccatctggtggattcatggtctcgctggcttcaggagtgaagctgtagaccttcgcggtaagtgttacagctcttcaagtgacgcgtctggagttgttcattcctcccatccagagttgttcattccttccggtgggttcgtggtctcactgatctcaggagagaagctgcagacctttgcggtgagtgttacagctcataaaggcagcgtggacccaaacggtgagcagcagcaagatttattgcaaagagtgaaagaacaaaccttccacagtgtcaatcaggaccctagcgggttgccactgctgcttgg
i panTro4.chr4             C 0 C 0
e mm10.chr8                 87632868 1255 - 129401213 I
e canFam3.chr16             17941480   0 -  59632846 C
e calJac3.chr3             190505293   3 - 190850796 I
e chlSab2.chr7             135394418   0 + 135778131 C
e papAnu2.chr5             178454560   0 + 178775436 C
e macFas5.chr5             189030702   0 + 189454096 C
e rheMac3.chr5             183646822   0 + 184069350 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198030522 12562 + 198332218 M

a score=111455.000000
s hg38.chr4_KI270925v1_alt    262742 427 +    555799 ggcagcctgcttttattcccttatctggccccacccacatcctgctgattggtccgttttacagagagctgattggtctgttttacagagagctgattggccctttttgacagggtgctaattggggcgtttacaatcctttagctagacacaaaagttctccaagtccccactagattagctagacacagagcactgattggtgcattcacaaaccttgagctagatacagggcgctgattggtgtgttcacaaacctcgagctagacacagagtgctgattggtgcatttacaattccttagctagacataaaagttctccaagtccccactagactcaggagcccagctggcttcttccagtggatcctgcactggggaggcaggtggagctgcctgccagtcctgcgccatctgcccgcactg
s panTro4.chr4             192956855 427 + 193495092 ggcagcctgcttttattcccttatctggccccacccacatcctgctgattggtccgttttacagagagctgattggtctgttttacagagagctgattggccctttttgacagggtgctgattggggcgtttacaatcctttagctagacacaaaagttctccaagtccccactagattagctagacacagagcactgattggtgcattcacaaaccttgagctagatacagggcgctgattggtgtgttcacaaacctcgagctagacacagagtgctgattggtgcatttacaattccttagctagacataaaagttctccaagtccccactagactcaggagcccagctggcttcttctagtggatcctgcactggggaggcaggtggagctgcctgccagtcctgcgccgtctgcccgcactg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198043241 417 + 198332218 ggcaacctgtttttattcccttatctggccccacccacatcctgctgattggtccattttacagagagctgattggtctgttttacagagagctgattggtccattttgacagggtgctgattggtgcatttataatgcctgagctagacacaaaagttctccaagtccccactagattagctagacacagagcactgattggtgcattcacaaaccttgagctagataaagggcgctgattggtgtgttcacaaacctcgagctagacacagagtgctgattggtgcatttacaattccttagctagacata----------aagtccccactagactcgggagcccagctggcttcatctagtggatcctgcactggggaggcccgtggagctgcctgccagtcccgcgcgttctgcccgcactc
i ponAbe2.chr4             M 12562 I 39
e mm10.chr8                 87632868 1255 - 129401213 I
e canFam3.chr16             17941480   0 -  59632846 C
e calJac3.chr3             190505293   3 - 190850796 I
e chlSab2.chr7             135394418   0 + 135778131 C
e papAnu2.chr5             178454560   0 + 178775436 C
e macFas5.chr5             189030702   0 + 189454096 C
e rheMac3.chr5             183646822   0 + 184069350 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=4845.000000
s hg38.chr4_KI270925v1_alt    263169 54 +    555799 aggagtgcggctgaggagcccttgggtggtcgaggggaccctagccatcgagca
s panTro4.chr4             192957282 54 + 193495092 aggagtgtggctgaggagcccttgggtggtcgaagggaccctagccattgagca
i panTro4.chr4             C 0 C 0
e mm10.chr8                 87632868 1255 - 129401213 I
e canFam3.chr16             17941480  0 -  59632846 C
e calJac3.chr3             190505293  3 - 190850796 I
e chlSab2.chr7             135394418  0 + 135778131 C
e papAnu2.chr5             178454560  0 + 178775436 C
e macFas5.chr5             189030702  0 + 189454096 C
e rheMac3.chr5             183646822  0 + 184069350 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198043658 39 + 198332218 I

a score=123034.000000
s hg38.chr4_KI270925v1_alt    263223 512 +    555799  
s panTro4.chr4             192957336 512 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198043697 504 + 198332218  
i ponAbe2.chr4             I 39 C 0
e mm10.chr8                 87632868 1255 - 129401213 I
e canFam3.chr16             17941480   0 -  59632846 C
e calJac3.chr3             190505293   3 - 190850796 I
e chlSab2.chr7             135394418   0 + 135778131 C
e papAnu2.chr5             178454560   0 + 178775436 C
e macFas5.chr5             189030702   0 + 189454096 C
e rheMac3.chr5             183646822   0 + 184069350 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=1692.000000
s hg38.chr4_KI270925v1_alt    263735 3 +    555799 cTA
s panTro4.chr4             192957848 3 + 193495092 cTA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198044201 3 + 198332218 cTA
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178454560 3 + 178775436 CTA
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87632868 1255 - 129401213 I
e canFam3.chr16             17941480 0 -  59632846 C
e calJac3.chr3             190505293 3 - 190850796 I
e chlSab2.chr7             135394418 0 + 135778131 C
e macFas5.chr5             189030702 0 + 189454096 C
e rheMac3.chr5             183646822 0 + 184069350 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=45467.000000
s hg38.chr4_KI270925v1_alt    263738  50 +    555799 CCTTCTCCCTAACTTGTGGATGCCCGTGGACAACACTACCA--------------------------------------------------------------------ACCACAGAC
s panTro4.chr4             192957851  50 + 193495092 CCTTCTCCCTCACTTGTGGATGCCCGTGGACAACACTACCA--------------------------------------------------------------------ACCACAGAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198044204 118 + 198332218 CCTTCTCCCTCACTTGCGGATGCTGGTGGACAACACTACCAACCACAGAGTATATTCAATATGCTGCCTTCTCCTTCACTTGCGGATGCCTGTGGACGATATACTACCCACCACAGAG
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183646822  50 + 184069350 CCTTCTCCCTCACTTGTGGATGCCTGTGGACAACACTACCC--------------------------------------------------------------------ATCACAGAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189030702  50 + 189454096 CCTTCTCCCTCACTTGTGGATGCCTGTGGACAACACTACCC--------------------------------------------------------------------ATCACAGAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178454563  48 + 178775436 CCTTCTCCCTCACTTGTGGAAGTCTGTGGACAATACTACCA--------------------------------------------------------------------AC--CAGAG
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87632868 1255 - 129401213 I
e canFam3.chr16             17941480   0 -  59632846 C
e calJac3.chr3             190505293   3 - 190850796 I
e chlSab2.chr7             135394418   0 + 135778131 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=46165.000000
s hg38.chr4_KI270925v1_alt    263788 24 +    555799 AGTATATTCAATATGCTGCCTTCT
s panTro4.chr4             192957901 24 + 193495092 AGTATATTCAATATGCTGCCTTCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198044322 24 + 198332218 AGTATATTCAATATGCTGCCTTCT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183646872 24 + 184069350 AGTATATTCAATATGCTGCCTTCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189030752 24 + 189454096 AGTATATTCAATATGCTGCCTTCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178454611 24 + 178775436 AGTATATTCAATACGCTGCCTTCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135394418 24 + 135778131 AGTATATTCAATACGCTGCCTTCT
i chlSab2.chr7             C 0 I 6944
e mm10.chr8                 87632868 1255 - 129401213 I
e canFam3.chr16             17941480  0 -  59632846 C
e calJac3.chr3             190505293  3 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=50745.000000
s hg38.chr4_KI270925v1_alt    263812 27 +    555799 CCCTCACTTGTGGATGCCCGTGGACAA
s panTro4.chr4             192957925 27 + 193495092 CCCTCACTTGTGGATGCCCGTGGACAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198044346 27 + 198332218 CCCTCACTTGCGGATGCCTGTGGACAA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183646896 27 + 184069350 CCCTCACTTGTGGATGCCTGTGGACAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189030776 27 + 189454096 CCCTCACTTGTGGATGCCCATGGACAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178454635 27 + 178775436 CCCTCACTTGTGGATGCCTGTGGACAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135401386 27 + 135778131 CCCTCACTTGTGGATGCCTGTGGACAA
i chlSab2.chr7             I 6944 C 0
e mm10.chr8                 87632868 1255 - 129401213 I
e canFam3.chr16             17941480  0 -  59632846 C
e calJac3.chr3             190505293  3 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=1365.000000
s hg38.chr4_KI270925v1_alt    263839 1 +    555799 T
s panTro4.chr4             192957952 1 + 193495092 T
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198044373 1 + 198332218 T
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183646923 1 + 184069350 T
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178454662 1 + 178775436 T
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135401413 1 + 135778131 T
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87632868 1255 - 129401213 I
e canFam3.chr16             17941480 0 -  59632846 C
e calJac3.chr3             190505293 3 - 190850796 I
e macFas5.chr5             189030803 0 + 189454096 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=910.000000
s hg38.chr4_KI270925v1_alt    263840 1 +    555799 A
s panTro4.chr4             192957953 1 + 193495092 A
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198044374 1 + 198332218 A
i ponAbe2.chr4             C 0 I 1766
s rheMac3.chr5             183646924 1 + 184069350 A
i rheMac3.chr5             C 0 C 0
s chlSab2.chr7             135401414 1 + 135778131 A
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87632868 1255 - 129401213 I
e canFam3.chr16             17941480 0 -  59632846 C
e calJac3.chr3             190505293 3 - 190850796 I
e papAnu2.chr5             178454663 0 + 178775436 C
e macFas5.chr5             189030803 0 + 189454096 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=600.000000
s hg38.chr4_KI270925v1_alt    263841 1 +    555799 C
s panTro4.chr4             192957954 1 + 193495092 C
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183646925 1 + 184069350 C
i rheMac3.chr5             C 0 I 7
s chlSab2.chr7             135401415 1 + 135778131 C
i chlSab2.chr7             C 0 I 1
e mm10.chr8                 87632868 1255 - 129401213 I
e canFam3.chr16             17941480 0 -  59632846 C
e calJac3.chr3             190505293 3 - 190850796 I
e papAnu2.chr5             178454663 0 + 178775436 C
e macFas5.chr5             189030803 0 + 189454096 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198044375 1766 + 198332218 I

a score=116909.000000
s hg38.chr4_KI270925v1_alt    263842 1324 +    555799  
s panTro4.chr4             192957955 1325 + 193495092  
i panTro4.chr4             C 0 C 0
e mm10.chr8                 87632868 1255 - 129401213 I
e canFam3.chr16             17941480    0 -  59632846 C
e calJac3.chr3             190505293    3 - 190850796 I
e chlSab2.chr7             135401416    1 + 135778131 I
e papAnu2.chr5             178454663    0 + 178775436 C
e macFas5.chr5             189030803    0 + 189454096 C
e rheMac3.chr5             183646926    7 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198044375 1766 + 198332218 I

a score=300.000000
s hg38.chr4_KI270925v1_alt    265166 1 +    555799 c
s panTro4.chr4             192959280 1 + 193495092 c
i panTro4.chr4             C 0 C 0
s macFas5.chr5             189030803 1 + 189454096 C
i macFas5.chr5             C 0 C 0
e mm10.chr8                 87632868 1255 - 129401213 I
e canFam3.chr16             17941480 0 -  59632846 C
e calJac3.chr3             190505293 3 - 190850796 I
e chlSab2.chr7             135401416 1 + 135778131 I
e papAnu2.chr5             178454663 0 + 178775436 C
e rheMac3.chr5             183646926 7 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198044375 1766 + 198332218 I

a score=1050.000000
s hg38.chr4_KI270925v1_alt    265167 3 +    555799 acT
s panTro4.chr4             192959281 3 + 193495092 acT
i panTro4.chr4             C 0 C 0
s macFas5.chr5             189030804 3 + 189454096 ACT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178454663 3 + 178775436 ACA
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87632868 1255 - 129401213 I
e canFam3.chr16             17941480 0 -  59632846 C
e calJac3.chr3             190505293 3 - 190850796 I
e chlSab2.chr7             135401416 1 + 135778131 I
e rheMac3.chr5             183646926 7 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198044375 1766 + 198332218 I

a score=6296.000000
s hg38.chr4_KI270925v1_alt    265170 8 +    555799 ACCAACCA
s panTro4.chr4             192959284 8 + 193495092 ACCAACCA
i panTro4.chr4             C 0 C 0
s macFas5.chr5             189030807 8 + 189454096 ACCCATCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178454666 8 + 178775436 ACCAACCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135401417 8 + 135778131 ACCAACCA
i chlSab2.chr7             I 1 C 0
e mm10.chr8                 87632868 1255 - 129401213 I
e canFam3.chr16             17941480 0 -  59632846 C
e calJac3.chr3             190505293 3 - 190850796 I
e rheMac3.chr5             183646926 7 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198044375 1766 + 198332218 I

a score=4365.000000
s hg38.chr4_KI270925v1_alt    265178 3 +    555799 CAG
s panTro4.chr4             192959292 3 + 193495092 CAG
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183646933 3 + 184069350 CAG
i rheMac3.chr5             I 7 C 0
s macFas5.chr5             189030815 3 + 189454096 CAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178454674 3 + 178775436 CAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135401425 3 + 135778131 CAG
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87632868 1255 - 129401213 I
e canFam3.chr16             17941480 0 -  59632846 C
e calJac3.chr3             190505293 3 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198044375 1766 + 198332218 I

a score=50328.000000
s hg38.chr4_KI270925v1_alt    265181 29 +    555799 AGAGTATATTCAATATGCTGCCTTCTCCC
s panTro4.chr4             192959295 29 + 193495092 AGAGTATATTCAATATGCTGCCTTCTCCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198046141 29 + 198332218 AGAGTATATTCAATATGCTGCCTTCTCCC
i ponAbe2.chr4             I 1766 C 0
s rheMac3.chr5             183646936 29 + 184069350 AGAGGATATTCAATATGCTACCTTCTCCA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189030818 29 + 189454096 AGAGTATATTCAATATGCTGCCTTCTCCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178454677 29 + 178775436 AGAGGATATTCAATATGCTACCTTCTCCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135401428 29 + 135778131 AGAGGATATTCAGTATGCTACCTTCTCCA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87632868 1255 - 129401213 I
e canFam3.chr16             17941480  0 -  59632846 C
e calJac3.chr3             190505293  3 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=969673.000000
s hg38.chr4_KI270925v1_alt    265210 510 +    555799  
s panTro4.chr4             192959324 512 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198046170 516 + 198332218  
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183646965 492 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189030847 558 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178454706 492 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135401457 492 + 135778131  
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17941480 514 -  59632846  
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87632868 1255 - 129401213 I
e calJac3.chr3             190505293   3 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=162771.000000
s hg38.chr4_KI270925v1_alt    265720 69 +    555799 TGTCATTCATTAATCCACTAATGGATAACTCAGAGCTTGTCTCTGCAGAGCCATTTCTGACTTG-GC----CAG
s panTro4.chr4             192959836 69 + 193495092 TGTCATTCATTAATCCGCTAATGGATAACTCAGAGCTTGTCTCTGCAGAGCCATTTCTGACTTG-GC----CAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198046686 69 + 198332218 TGTCATTCATTAATCCACTAATGGATAACTCAGAGCTTGTCTCTGCAGAGCCGTTTCTGACTTG-GC----CAA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183647457 68 + 184069350 TGTGTTTCATTAATCCACTAATGGATAACTCAGAGCTTGTCTCTGCAGAGCCATTTCTGACTGG-CC-----AA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189031405 69 + 189454096 TGTGTTTCATTAATCCACTAACGGATAACTCAGAGCTTGTCTCTGCAGAGCCATTTCTGACTGG-CC----aaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178455198 70 + 178775436 TGTGTTTCATTAATCCACTAACGAACAACTCAGAGCTTGTCTCTGCAGAGCCATTTCTGactggacc----aaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135401949 73 + 135778131 TGTGTTTCATTAATCCACTAACGAACAACTCAGAGCTTGTCTCTGCAGAGCCATTTCTGACTGG-CCaaaaaaa
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190505296 69 - 190850796 TGTAATTCGTTAATGCACTAATGGATAACTCAGAGGTTAGCTTTGCAGAGCCATTTCTGACTTG-CC----AAA
i calJac3.chr3             I 3 C 0
s canFam3.chr16             17941994 60 -  59632846 ---------GTGACCCATTAATGGATAACTCAGAACTTATCTCTGCAGAGCCATTTCCTAACaa-ga----aag
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87632868 1255 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=700950.000000
s hg38.chr4_KI270925v1_alt    265789 243 +    555799 ----------------------------AAAAAGAAAAAAA----AGAAAAGAAAGCAAT----------------------TGCACAATGATTCAGCTTGCGATTTAACATTCAAGAGCCTAACAAATGCATTCAGTGAAAATCGAGCCTTATTAAGCCCTC-----CTGACTTTGACAAAGTGCTTCGGGTGCAGAGAGATGCCTCTGACACTAGACTTGAGGCACTGCTGTCTCTGATAATGAAAGAAGAGCAACACCCAAAGATGTATAAACACAAGGAACTTTTAAAAGAGAAACTC
s panTro4.chr4             192959905 243 + 193495092 ----------------------------AAAAAGAAAAAAA----AGAAAAGAAAGCAAT----------------------TGCACAGTGGTTCAGCTTGCGATTTAACATTCAAGAGCCCAACAAATGCATTCAGTGAAAATCGAGCCTTATTAAGCCCTC-----CTGACTTTGACAAAGTGCTTCGGGTGCAGAGAGATGCCTCTGACACTAGACTTGAGGCACTGCTGTCTCTGATAATGAAGGAAGAGCAACACCCAAAGATGTATAAACACAAGGAACTTTTAAAAGAGAAACTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198046755 247 + 198332218 ----------------------------AAAAAGAAAAAAAAAGCAGAAAAGAAAGCAAT----------------------TGCACAATGATTCAGCTTGCGATTTAACATTCAAGAGCCTAACAAATGCATTCAGTGAAAATCGAGCCTTATTAAGCCCTC-----CTGACTTTGACAAAGTGCTTCGGGTGCAGACAGATGCCTCTGACACTAGACTTGAGGCACTGCTGTCTCTGATAATGAAGGAAGAGCAACACCCAAAGATGTATAAACACAAGGAACTTTTAAAAGAGAAACTC
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183647525 247 + 184069350 ----------------------------AAAAAAAAAAAAAAGACAGAAAAGGAAGCAAT----------------------TGCACAATGATTCAGCTTGCAATTTAACATTCAAGAATCTAACAAATGCATTCAGTGAAAATCGAGCCTTATTAAGCCCTC-----CTGACTTTGACAAAGTGCCTTGGGTGCAGAGAGGTGCCTCTGACATTAGACTTGAGGCACTGCTGTCTCTGATAATGAAGGAACAGCAGCACCCAAAGATGTATACACACAAGGAACTTTTAAAATAGAAACTC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189031474 247 + 189454096 ----------------------------aaaaaaaaaaaaaagacagaaaaGGAAGCAAT----------------------TGCACAATGATTCAGCTTGCAATTTAACATTCAAGAATCTAACAAATGCATTCAGTGAAAATCGAGCCTTATTAAGCCCTC-----CTGACTTTGACAAAGTGCCTTGGGTGCAGAGAGGTGCCTCTGACATTAGACTTGAGGCACTGCTGTCTCTGATAATGAAGGAACAGCAGCACCCAAAGATGTATACACACAAGGAACTTTTAAAATAGAAACTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178455268 247 + 178775436 ----------------------------aaaaaaaaaaaaaagacagaaaaggaagcaaT----------------------TGCACAATGATTCAGCTTGCAATTTAACATTCAAGAATCTAACAAATGCATTCAGTGAAAATCGAGCCTTATTAAGCCCTC-----CTGACTTTGACAAAGTGCTTTGGGTGCAGAGAGGTGCCTCTGACATTAGACTTGAGGCACTGCTGTCTCTGATAATGAAGGAACAGCAGCACCCAAAGATGTATACACACAAggaacttttaaaatagaaactc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135402022 247 + 135778131 ----------------------------aaaaaaaaaaaaaagacagaaaaggaagaaaT----------------------TGCACAATGATTCAGCTTGCAATTTAACATTCAAGAATCTAACAAATGCATTCAGTGAAAACCGAGCCTTACTAAGCCCTC-----CTGACTTTGACAAAGTGCTTTGGGTGCAGAGACATGCCTCTGACATTAGACTTGAGGCACTGCTGTCTCTGATAATGAAGGAACAGCAACACCCAAAGATGTATACACACAAGAAACTTTTAAAATAGAAACTC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190505365 231 - 190850796 ----------------------------AAAAG------------AGAAAACAAAGAGGC----------------------TGAACAGTGAATCAGCTTGCG-TTTAACATTCAAGAACCTAAGGAATGCATTCAGTGAAAACCCGGCCTTATGACACCCTC-----CTGACGTTGACAAAGTGCTTCGGGTGCAAATAGATGCCTCTGACATTACACTTGAGGCATTGCTG--TCTGATGAGGAAGGAAGAGCAACACCCAAAGACGGATATGCAC-AGGAACGTTTAAAAGAGAAACTC
i calJac3.chr3             C 0 I 306
s mm10.chr8                 87634123 235 - 129401213 -----------------------------AATAAATGAAAA----AAAAATAGAAGACAC----------------------TAGGCAATATTTCAGTTCATAACTTAACATTCAGAAATGGAACAGATACAGTCAATAAG----CAGCTTTGTCATACACTCAAACACTGG---TGACATATTCCT----GTGCAGACAAGTGATTCTGACTTTGGACTTGAAGCACTGCTCTCTCTGACAATGAAGGAAGAGAAATACTC-ATGATAGCCATACACCAGAAACCTGGAAGATTACAACAC
i mm10.chr8                I 1255 C 0
s canFam3.chr16             17942054 296 -  59632846 aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaggaaggaaggaaagaGGATTCAACTTGTGATTTAACATTCAAGAACCTAACAAATGCATTCGGTGAAAATCTAGCCTTATTATGCCCTC-----CTGACTTTGATAAAGCATCCCTGGTTCAAACGGATTCCTCTGACATTTGACTTGAGGCACTGCTGTCTCTGATAATGAAGGAAGAGAAACACTCAGGGATATACACGCAC-AGGAACTTTTAAAAGGAAAACTC
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=6447.000000
s hg38.chr4_KI270925v1_alt    266032 3 +    555799 TGT
s panTro4.chr4             192960148 3 + 193495092 TGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198047002 3 + 198332218 TGT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183647772 3 + 184069350 TGT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189031721 3 + 189454096 TGT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178455515 3 + 178775436 tgT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135402269 3 + 135778131 TGT
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87634358 1 - 129401213 --T
i mm10.chr8                C 0 I 2
s canFam3.chr16             17942350 1 -  59632846 --T
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190505596 306 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=252208.000000
s hg38.chr4_KI270925v1_alt    266035 83 +    555799 AACTTTCTATTTCAA-AAAAGTCTTTGTCTT---C---GAAGTTTGTC--TATGTGGCCGGCTTGTTGAAATTTTCTTCCTAAACAAAA---TCC
s panTro4.chr4             192960151 83 + 193495092 AACTTTCTATTTCAA-AAAAGTCTTTGTCTT---C---GAAGTTTGTC--TATGTGGCCGGCTTGTTGAAATTTTCTTCCTAAACAAAA---TCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198047005 83 + 198332218 AACTTTCTATTTCAA-AAAAGTCTTTGTCTT---C---GAAGTTTGTC--TACGTGGCAGGCTTGTTGAAATTTTCTTCCTAAACAAAA---TCC
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183647775 83 + 184069350 AACTTTCTATTTCAA-AAAAGTCTTTGCCTT---C---GAAGTTTGTC--TGTGTAGCAGACTTGTTGAAATTTTCTTCCTAAACAAAA---TCC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189031724 83 + 189454096 AACTTTCTATTTCAA-AAAAGTCTTTGCCTT---C---GAAGTTTGTC--TGTGTAGCAGACTTGTTGAAATTTTCTTCCTAAACAAAA---TCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178455518 83 + 178775436 AACTTTCTATTTCAA-AAAAGTCTTTGCCTT---C---GAAGTTTGTC--TGTGTAGCAGACTTGTTGAAATTTTCTTCCTAAACAAAA---TCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135402272 83 + 135778131 AACTTTCTATTTCAA-AAAAGTCTTTGCCTT---C---GAAGTTTGTC--TGTGTAGCAGACTTGTTGAAATTTTCTTCCTAAACAAAA---TCC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190505902 83 - 190850796 AACTTTCTATTTCAA-AAAAGTCTTTGTCTT---A---GAAGTTTGTC--TCTGCAGCAGGCTTGTTGAAATTTTCTTGCTAACCAAAA---TCC
i calJac3.chr3             I 306 C 0
s mm10.chr8                 87634361 91 - 129401213 AGCTTTCTCTTTTAA-AGAAACCTTCCTCTTCTGC---AAATCTAATCATCACACACCAGGCTTATTAAACTTTTCTTCCTAAACataatttttt
i mm10.chr8                I 2 C 0
s canFam3.chr16             17942351 87 -  59632846 AACTTTCTTAACCAAGGAAAATCTTGGTCTT---CCAAGAAGTTGATC--TATCCAGCAGGTTTGTTGAAATTTTCTTCCTGTACAAAA---TTC
i canFam3.chr16            C 0 I 164
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=2948797.000000
s hg38.chr4_KI270925v1_alt    266118 1157 +    555799  
s panTro4.chr4             192960234 1157 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198047088 1163 + 198332218  
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183647858 1118 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189031807 1117 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178455601 1155 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135402355 1154 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190505985 1075 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87634452 1216 - 129401213  
i mm10.chr8                C 0 C 0
s canFam3.chr16             17942602 1188 -  59632846  
i canFam3.chr16            I 164 I 194
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=1691010.000000
s hg38.chr4_KI270925v1_alt    267275 551 +    555799  
s panTro4.chr4             192961391 550 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198048251 551 + 198332218  
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183648976 560 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189032924 560 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178456756 558 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135403509 559 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190507060 564 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87635668 566 - 129401213  
i mm10.chr8                C 0 C 0
s canFam3.chr16             17943984 567 -  59632846  
i canFam3.chr16            I 194 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=56621.000000
s hg38.chr4_KI270925v1_alt    267826 24 +    555799 g-----------------------ttaaaataaaaaccttagccaaa
s panTro4.chr4             192961941 24 + 193495092 g-----------------------ttaaaataaaaaccttagccaaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198048802 24 + 198332218 g-----------------------ttaaaataaaaaccttagccaaa
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183649536 24 + 184069350 g-----------------------ttaaaagaaaaatcttagccaaa
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189033484 24 + 189454096 g-----------------------ttaaaagaaaaatcttagccaaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178457314 24 + 178775436 G-----------------------TTAAAAGAAAAGTCTTAGCCAAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135404068 24 + 135778131 g-----------------------ctaaaagaaaaatcttagccaaa
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190507624 24 - 190850796 g-----------------------ttaaaataaaaatcttaaccaaa
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87636234 47 - 129401213 ATAGGCTCACGACTAAGGATTTGTTTAAAATAAAAATCCCTGCCAGA
i mm10.chr8                C 0 I 2
e canFam3.chr16             17944551  0 -  59632846 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=815090.000000
s hg38.chr4_KI270925v1_alt    267850 379 +    555799 ttaaattcaacagaatttaactgagcaaagagcaattcgccaatcgggcagcctcccaaatcagagaaggctgagagagagactccagcacagccacgtcatagcagatttatggacagagaaaggaaagtgatataccgaaaatggaaaccagctacagaaacagctggattggttacagctcagtgtttgccttatttgaatgtggcttgaacagctggccccctttgattgaccaaaactcagcaatt-gcacaaaagtaggttacaatctgtttacacctccctttagattatag-----ttcactatgtacagagaaacctttaggctgaacagaaaatacgtaaggaggcagttaggctaaacttgattcaacaGATTC
s panTro4.chr4             192961965 379 + 193495092 ttaaattcaacagaatttaactgagcaaagagcaattcgccaattgggcagcctcccaaatcagagaaggctgagagagagactccagcacagccacgtcgtagcagatttatggacagagaaaggaaagtgatataccgaaaatggaaaccagctacagaaacagctggattggttacagctcagtgtttgccttatttgaatgtggcttgaacagctggccccctttgattgaccaaaactcagcaatt-gcacaaaagtaggttacaatctgtttacacctccctttagattatag-----ttcactatgtacagagaaacctttaggctgaacagaaaataagtaaggaggcagttaggctaaacttgattcaacaGATTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198048826 378 + 198332218 ttaaattcaacagaatttaactgagcaaagagcaattcgccaatcgggcagcctcccaaatcagagaaggct--gagagagactccagcacagccatgtcatagcagatttatggacagagaaaggaaagtgatatactgaaaatggaaacgagctacagaaacagctggattggttacagctcagtgtttgccttatttgaatgtggcttgaacagctggccccctttgattgaccaaaactcagcaattggcacaagagtaggttacaatctgtttacacctccctttagattatag-----ttcactatgtacagagaaacctttaggctgaacagaaaatatgaaaggaggcagttaggctaaacttgatttaacaGATTC
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183649560 372 + 184069350 ttaaattcaacagaatttaactgagtgcggaacgattcaccagttgggcagcctcccaaatcagagaaggct--gagagagactcccgcacagccacatggtagcagatttatggacaga-----gaaagtgatataccaaaaagagaaatgaggtacagaaacagttggattggttacagctcagtgtttgctttatttgaatgtggtttgaacagctggcgccctttga-cgcccaaaactcggcaattggcacaagagtagattacaatctgtttacacctccctttagattatag-----ttcactatgtacagagaaacttttaggctgaacagaaaatatgtaaggaggctgttaggctaaactttattgagcaGATGC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189033508 371 + 189454096 ttaaattcaacagaatttaactgagtgcggaacgattcaccagttgggcagcctcccaaatcagagaaggct--gagagagactcccgcacagccacatggtagcagatttatggacaga-----gaaagtgatataccaaaaatagaaatgaggtacagaaacagttggattgg-tacagctcagtgtttgctttatttgaatgtggtttgaacagctggcgccctttga-cgcccaaaactcggcaattggcacaagagtagattacaatctgtttacacctccctttagattatag-----ttcactatgtacagagaaacttttaggctgaacagaaaatatgtaaggaggctgttaggctaaactttattgagcaGATGC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178457338 372 + 178775436 TTAAATTCAATAGAATTTAACTGAGTGAGGAACGATTCACCAGTTGGGCAGCCTCCCAAATCAGAGAAGGCT--GAGAGAGACTCCCGCACAGCCACATGGTAGCAGATTTATGGACAGA-----GAAAGTGATATACCGAAAATAgaaatgaggtacagaaacagttggattggttacagctcagtgtTTGCCTTATCTGAATGTGGTTTGAACAGCTGGCACCCTTTGA-CGACCAAAACTCGGCAATTGGCACAAGAGTAGATTACAATCTGTTTACACCTCCCTTTAGATTATAG-----TtcactatgtacagagaaacTTTTAGGCTGAACagaaaatatgtaaggaggctgTTAGGCTAAACTTTATTTAGCAGATGC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135404092 370 + 135778131 ttaaattcaacagaatttaactgagtgaagaacgattcaccagttgggcagcctcccaaatcagagaaggct--gagagagactcccgcacagccacatggtagcagatttatggacaga-----gaaagtgatatactgaaaatagaaatgaggtacagaaacagttggattggttacagctcagtgtttgccttatttgaatgtggtttgaacagctggcgccctttga-cgaccaaaactcggcaattggcacaagagtagattacaa--tgtttacacctcccttcagattatag-----ttcactatgtacagagaaacttttaggctgaacagaaaatatgtaaggaggctgttaggctaaactttatttagcaGATGC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190507648 382 - 190850796 tcaaattcaacagaatttaactgagtcaggaccgatttgccaatcaggcagccctccaagccagagcaggat--gagcgagactcccgcacggccacaccatagcagactgatggacagagaaagggaagtgacatactgaaaatggaaatgaggcacagaagcagctggattgcttacagctcagtgtttgccttacctgaatgtggtttgaacagctggcccccttggattcaccaaagctgggcgattggtacaagagtaggatatagtctgtttatacct-cctgtagattatagttcaattcactatgtacaaagaaaccgttatgctaaacagaaaacatgtgagggggcagttaagctaaacttgatttaacaGATGC
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87636281   2 - 129401213 I
e canFam3.chr16             17944551   0 -  59632846 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=134919.000000
s hg38.chr4_KI270925v1_alt    268229 53 +    555799 ATAGTGTTGTTGATGCCTAGGGTCTTATTACAAACAAAA-ATTCACAAGTTTTC
s panTro4.chr4             192962344 53 + 193495092 ATAGTGTTGTTGATGCCTAGGGTCTTATTACAAACAAAA-ATTCACAAGTTTTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198049204 53 + 198332218 ATAGTGTTGTTGATGCCTAGGGGCTTATTACAAACAAAA-ATTCACAAGTTTTC
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183649932 52 + 184069350 ATAGTGTTGTTGATGCCTAGGA-CTTATTACAAACAAAA-ATTCACAAGTTATC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189033879 52 + 189454096 ATAGTGTTGTTGATGCCTAGGA-CTTATTACAAACAAAA-ATTCACAAGTTATC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178457710 52 + 178775436 ATAGTGTTGTTGATGCCTAGGA-CTtattacaaacaaaa-attcacaagTTTTC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135404462 52 + 135778131 ATAGTGTTGTTGATGCCTAGGA-CTTATTACAAACAAAA-ATTCACAAGTTTTC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190508030 54 - 190850796 ATAGTGTTGTTCATGCCTGGGAGCTTATTAAAAACAAAACATTTACTAGTTTTC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17944551 52 -  59632846 ATAGTGTTTGTGATGACTCAGG-GCTGTTTAAAACAAAA-ATTCACTAGTTTTC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87636281  2 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=832207.000000
s hg38.chr4_KI270925v1_alt    268282 373 +    555799  
s panTro4.chr4             192962397 373 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198049257 452 + 198332218  
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183649984 445 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189033931 408 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178457762 412 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135404514 443 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190508084 379 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87636283 363 - 129401213  
i mm10.chr8                I 2 C 0
s canFam3.chr16             17944603 367 -  59632846  
i canFam3.chr16            C 0 I 160
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=320140.000000
s hg38.chr4_KI270925v1_alt    268655 133 +    555799 -----CCATGTCTTTG-AAAAGACTGTTTTGAAAAAATA---------------------------------------TAAATCATGTTATTCCATGGTAATG--ATGTTACTTTAATAAACTAATGACATG---------TATGGGTGCTAATACAA---TGGGTATTATTAGTGCATTAACAAAGTAACC
s panTro4.chr4             192962770 133 + 193495092 -----CCATGTCTTTG-AAAAGACTGTTTTGAAAAAATA---------------------------------------TAAATCATGTTATTCCATGGTAATG--ATGTTACTTTAATAAACTAATGACATG---------TATGGGTGCTAATACAA---TGGGTATTATTAGTGCATTAACAAAGTAACC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198049709 133 + 198332218 -----CCATGTCTTTA-GAAAGACTGTTTTGAAAAAATA---------------------------------------TAAATCATGTTATTCCATGGTAATG--ATGTTACTTTAATAAACTAATGACATG---------TATGGGTGCTAATACAA---TGGTTATTATTAGTGTATTAACAAAGTAACC
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183650429 132 + 184069350 -----CCATGTCTTTT--AAAGACTGTTTTGAAAAAATA---------------------------------------TAAATCATATTATTCCATGGTAATG--ATGTTACTTTAATAAACTGATGACATG---------TATGCGTGCTAATACAA---TGGGTATTATTAGTGTATTAAcataataacc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189034339 132 + 189454096 -----CCATGTCTTTT--AAAGACTGTTTTGAAAAAATA---------------------------------------TAAATCATATTATTCCATGGTAATG--ATGTTACTTTAATAAACTGATGACATG---------TATGCGTGCTAATACAA---TGGGTATTATTAGTGTATTAAcataataacc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178458174 132 + 178775436 -----CCATGTCTTTT--AAAGactgttttgaaaaaata---------------------------------------taaatcatattatTCCATGGTAATG--ATGCTACTTTAATAAACTGATGACATG---------TATGTGTGCTAATACAA---TGGGTATTATTAGTGTATTAACATAATAACC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135404957 132 + 135778131 -----CCATGTCTTTT--AAAGACTGTTTTGAAAAAATA---------------------------------------TAAATCATATTATTCCATGGTCATG--ATGTTACTTTAATAAACTGATGACATG---------TATGTGTGTTAATACAA---TGGGTATTATTAGTGTATTAACATAATAACC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190508463 134 - 190850796 -----CCATGTCTTTTAAAAGGACTGTTTTAAAAAATTA---------------------------------------TAAATCCTGTTATTGCATGGTAATG--ATGTTACCTTAGTAAACTAATGACACG---------TACGGGTGCTAATCCAG---TAGACAGTATTAGAGTATTGACACAGCAACC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87636646 137 - 129401213 -----ATAAATCTATTTGAAAGAC-----TAGAAAATCA---------------------------------------TGAATCATAT--TTCCATTATTATATTATGTTAATATATTATGACAATATTATGCTAATATATTATAGGTGTTAATATAA---CA-CTATTATTAGTGCAGTAGCACACTAACT
i mm10.chr8                C 0 I 813
s canFam3.chr16             17945130 165 -  59632846 tcatgctctctctctc-aaataaaagctttaaaaaTATAAATAAATAAATGAAACAAAACAAAACACTGGAGAAACAGTGAGTTGTGTTATTCCA--GTAAGG--------------TATACTAATAACATT---------TAAGGATGCTGACACAACACTGAGTATTCTTTGTGTATTAACATGA-AACT
i canFam3.chr16            I 160 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=-864.000000
s hg38.chr4_KI270925v1_alt    268788 1 +    555799 -A
s panTro4.chr4             192962903 1 + 193495092 -A
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198049842 1 + 198332218 -A
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183650561 1 + 184069350 -a
i rheMac3.chr5             C 0 I 108
s macFas5.chr5             189034471 1 + 189454096 -a
i macFas5.chr5             C 0 I 29
s papAnu2.chr5             178458306 1 + 178775436 -A
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135405089 1 + 135778131 -A
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190508597 1 - 190850796 -A
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87637596 1 - 129401213 -A
i mm10.chr8                I 813 C 0
s canFam3.chr16             17945295 1 -  59632846 T-
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=102753.000000
s hg38.chr4_KI270925v1_alt    268789 69 +    555799 ATTAAAGATGTAGAGTTTTCAAAT-AAACTTCGGGAAAGCATTGATGAAC-ACACAGCGCCCAC--TCAGGAA
s panTro4.chr4             192962904 69 + 193495092 ATTAAAGATGTAGAGTTTTCAAAT-AAACTTCGGGAAAGCATTGATGAAC-ACACAGCGCCCAC--TTAGGAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198049843 70 + 198332218 ATTAAAGATGTAGAGTTTTCAAATCAAACTTTGGGAAAGCACTGATGAAC-ACACGGCACCCAC--TCAGGAA
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189034501 64 + 189454096 ATTAAAGATGT--AGTTTCCAAATCAAACTTCGGGACAGCATT----AAC-ACATGGCACCCAC--TCGAGAA
i macFas5.chr5             I 29 C 0
s papAnu2.chr5             178458307 66 + 178775436 ATTAAAGATGTAGAGTTTCCAAATCGAACTTCGGGACAGCATT----AAC-ACATGGCACCCAC--TCGAGAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135405090 65 + 135778131 ATTAAAGATGTAGAGTTTCCAAATCGAACTTCGGTACAGCATT----AAC--CATGGCACCCAC--TCGAGAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190508598 65 - 190850796 ATTAAAGA-GCAGAGTTTCCAAACCAAACTTTGGGAAAGCATT----AAC-ACACAGCTCCCAC--TCAAGGA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87637597 69 - 129401213 AACAAAAAGCTATGATATTCAAGTTGCACCTTAGGATAGCATT----AATGATAGAGCCACCCCTATTACAAT
i mm10.chr8                C 0 C 0
s canFam3.chr16             17945296 67 -  59632846 TCTAAAGATCTAAA--TTTCAAATCAAATTTTAGGGAAACTTTGAT-ATT-ATACTGAGCCCAT--TCAAGAA
i canFam3.chr16            C 0 I 104
e rheMac3.chr5             183650562 108 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=9190.000000
s hg38.chr4_KI270925v1_alt    268858 5 +    555799 TCAGT
s panTro4.chr4             192962973 5 + 193495092 GCAGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198049913 5 + 198332218 GCACT
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189034565 5 + 189454096 GCATT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178458373 5 + 178775436 GCATT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135405155 5 + 135778131 GCATT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190508663 5 - 190850796 GCACT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87637666 5 - 129401213 GCACT
i mm10.chr8                C 0 C 0
s canFam3.chr16             17945467 5 -  59632846 tcagt
i canFam3.chr16            I 104 I 111
e rheMac3.chr5             183650562 108 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=19859.000000
s hg38.chr4_KI270925v1_alt    268863 8 +    555799 GCAGACTA
s panTro4.chr4             192962978 8 + 193495092 GCAGACTA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198049918 8 + 198332218 GCAGACTA
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189034570 8 + 189454096 GCAGACTA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178458378 8 + 178775436 GCAGACTA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135405160 8 + 135778131 GCAGACTA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190508668 8 - 190850796 GCAGGCTA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87637671 8 - 129401213 ATAGACAC
i mm10.chr8                C 0 C 0
s canFam3.chr16             17945583 8 -  59632846 GCAGACTC
i canFam3.chr16            I 111 C 0
e rheMac3.chr5             183650562 108 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=257235.000000
s hg38.chr4_KI270925v1_alt    268871 153 +    555799 CTTATCTGTTGTCTCTGGGCAAAGGATTCACTCTTCTGAAGCTATTTAGGCTAATAGCTATTATT--CCTTTCTATATTCTATTAATATTAGAGTCATTTAAGTTTATTCATTGGCTCCAACAAGCACTATTTAAGCTAATGATGGCATTCAATG
s panTro4.chr4             192962986 153 + 193495092 CTTATCTGTTGTCTCTGGGCAAAGGATTCCCTCTTCTGAAGCTATTTAGGCTAATAGCTATTATT--CCTTTCTATATTCTATTAATATTAGAGTCATTTAAGTTTATTCATTGGCTCCAACAAGCACTATTTAAGCTAATGATGGCATTCAATG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198049926 153 + 198332218 CTTATCTGTTGTCTCTGGGCAAAGGATTCACTCTTCTGAAGCTATTTAGGCTAATATCTATTATT--CCTTTCTATATTCTATTAATACTAGAGTCATCTAAGTTTATTCCTTGGCTCCAACAAACACTATTTAAGCTAATGATGGCATTCAATG
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178458386 153 + 178775436 CTTTTCTGTTGTCTCTGGGCAAATGATTAACTCTTCTGAAACTATTTGGGCTAATATCTATTATT--CTTTTCTATATTCTATTAATACTAGAGTCATTTATGTTTATTCATTGGCTCCAACAAACACTATTTCAGCTAATGATGGCATTTAATG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135405168 153 + 135778131 CTTTTCTGTTGTCTCTGGGCAAATGATTCACTCTTCTGAAGCTATTTGGGCTAATATCTATTATT--CTTTTCTGTATTCTATTAATACTAGAGTCATTTATGTTTATTCACTGGCTCCAACAAACACTATTTCAGCTAATGATGGCATTTAATG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190508676 153 - 190850796 CTTATCTGTTGTCTGTGGGCAAATGATTCGTTCTTCTGAAGCTATCTGGGCTAATAGCTATTATT--CTTGTCAATATTCTATCAATACTAGAGTCGTTTAACTGTATCCATTGGCTCCAACAAACACAATTTAAGCTGATGATGGCATTCGATG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87637679 137 - 129401213 TTCAACCATCATCTCTGAGTAAACGGTGCATTCTTCTGGAGTAATTT-------TGCCTATTATTGCCTTTTAAGTATCCGATCGATAATAGCTTTGTTTGAATGTATCCA-----------AACCTTTGACTATGCTAACGATGGCATTCAATA
i mm10.chr8                C 0 C 0
s canFam3.chr16             17945591 151 -  59632846 CTTATCTTTCATCTCAGGGCAAATAATTCATCCCTCTGAAGCTATTTGTGCTAAGATCTATTATT--ATTTT-TATGTCCTATCAATATTAGAACTATTTGAGTCTATCCA-TGACTCCAACAAACTCTATTTAAACAAATAATGGTATTCACTA
i canFam3.chr16            C 0 I 172
e macFas5.chr5             189034578   0 + 189454096 C
e rheMac3.chr5             183650562 108 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=203094.000000
s hg38.chr4_KI270925v1_alt    269024 128 +    555799 GCATCAAAAAGCACGTAAACATCACAGTC---------------------AAAAGCTAATCTTGGGATAGTTCCTCCATTCACAAAAGAATCTATCTAG-CT-CTGACTTTTGAAGTGTACCATAATTCTTGGAAGACAATGGAAGCCGAC
s panTro4.chr4             192963139 128 + 193495092 GCATCAAAAAGCACGTAAACATCACAGTC---------------------AAAAGCTAATCTTGGGATAGTTCCTCCAGTCACAAAAGAATCTATCTAG-CT-CTGACTTTTGAAGTGTACCATAATTCTTGGAAGACAATGGAAGCCGAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198050079 128 + 198332218 GAATCAAGAAGCACATAAACATCACAGTC---------------------AAAAGCCAATCTTGGGATAGTTCCTCCATTCACAAAAGAATCTATCTAT-CT-CTGACTTTTTAAGTGTACCATAATTATTGGAAGACAATGGAAGCTGAC
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178458539 128 + 178775436 GAGTCAAGAAGCACGTAAACATCACAGTC---------------------AAAAGCTAATCTTGGGATAGTTCCTCCATTCACAAAAGAATCTATCTAG-CT-CTGACATTTGAAGTGTACCATAATTACTGGAAGACAATGGAAGCTGAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135405321 128 + 135778131 GAGTCAAGAAGCACATAAACATCACAGTC---------------------AAAAGCTAATCTTGGGATAGTTCCTCCATTCACAAAAGAATCTATCTAG-CT-CTGACATTTGAAGTGTGCCACAATTACTGGAAGACAATGGAAGCTGAC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190508829 128 - 190850796 AAATGAAGAAGAGCGTAAACATCGCAATC----------------------AAAGCCAATCTTGGGATAGTTCCTCCATCCACAAGAGAATCCATCTAGTTT-CTGACATTTGAAGTGTCCCGTAATTATGGGACGACAATGAAAGCTGAC
i calJac3.chr3             C 0 I 310
s mm10.chr8                 87637816 121 - 129401213 GAATCAAGGAA-ATTTTGATATCAAGGTC---------------------AAAAGTGAATCTTGGGATACTTTCCCC--TCACAGGAAAA-----CTGA-CTACCGACCTTCAAAATCTAATGTAATTATTGGGGAGGCATGTAAGCTGAT
i mm10.chr8                C 0 C 0
s canFam3.chr16             17945914 149 -  59632846 GAATCAAGAAGCTCTTAAACATAAAAGCTATAAaaacaaacaaacaaacaaaaaaacaGTCTTAAGATATTTCCACCTTTCACAAAAGATTCAGTCTAG-TT-CTGGTCTTTGAAATGTACTATACTTATTGGGAGAGAGTGGCAGCTGAC
i canFam3.chr16            I 172 C 0
e macFas5.chr5             189034578   0 + 189454096 C
e rheMac3.chr5             183650562 108 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=710393.000000
s hg38.chr4_KI270925v1_alt    269152 412 +    555799 TCTTGACATAAGACACGTAAAA----------------------------------------------GTTGGTG-A--TTTCAAAAAAGTTTCCCAATTTCTTCATCAATAGCTCATCCAGTCAGTGCAGTAAAGCAAAATAGATGAGTTCTCAGATAAGACTAAACTATAGAAGAGACGG-----ATGAAACCTGTTTTATTACTGAAATAAGTCATTTTTAAATTATCTTGTCATTTATATTGGGTTTAGCTTCTCTTAATTTGTAACATGAATTATCATATTTTACTCTTCAAAATATTGAACAGAGAATCAATGCCAAGGCAATATTACCCTTAAAACACTACTATTTT-TAAAAAATCTTCAGCTATTAGACTTGTCTCAAATAAATAACTTTTCTATCATGTTCATTTATAACTAAGAAAGTGTGTATAGGTCTTGAAGT-ATTATAAAAGCTATCAGACT
s panTro4.chr4             192963267 412 + 193495092 TCTTGACATAAGACACGTAAAA----------------------------------------------GTTGGTG-A--TTTCAAAAAAGTTTCCCAATTTCTTCATCAATAGCTCATCCAGTCAGTGCAGTAAAGCAAAATAGATGAGTTCTCAGATAAGACTAAACTATAGAAGAGATGG-----ACGAAACCTGTTTTATTACTGAAATAAGTCATTTTTAAATTATCTTGTCATTTATATTGGGTTTAGCTTCTCTTAATTTGTAACATGAATTATCATATTTTACTCTTCAAAATATTGAACAGAGAATCAATGCCAAGGCAATATTACCCTTAAAACACTACTATTTT-TAAAAAATCTTCAGCTATTAGACTTGTCTCAAATAAATAACTTTTCTATCATGTTCATTTATAACTAAGAAAGTGTGTATAGGTCTTGAAGT-ATTATAAAAGCTATCAGACT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198050207 412 + 198332218 TCTTGACATAAGACACATAAAA----------------------------------------------GTTGGTA-A--TTTCAAAAAAGTTTCCCAATTTCTTCATCAATAGCTCATCCAGTCAGTGCAGTAAAGCAAAATAGATGAGTTCTCAGATAAGACTAAACTATAGAAGAGACGG-----ACGAAAACTGTTTTATTACTGAAATAAGTCATTTTTAAATTACCTTGTCATTTATATTGGGTTTAGCTTCTCTTAATTTGTAACATGAATTATCATATTTTATTCTTCAAAATATTGAACAGAGAATAAATGCCAAGGCAATATTACCCTTAAAACACTACTATTTT-AAAAAAATCTTCAGCTATTAGACTTGTCTCAAATAAATAACTTTTCTATCATGTTCATTTATAACTAAGAAAGTGTGTATGGGTCTTGAAGT-GTTATAAAAGCTATAGGACT
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178458667 409 + 178775436 TCTTGACATAAGACACATAAAA----------------------------------------------GTTGGCG-A--TTTCAAAAAAGTTtcccagtttcttcatcagtagCTCATGCAGTCAGTGCAGTAAAGCAAAATAGATGAGTTCTCAGCTAAGACTAAACTATAGAAGAGACGG-----ACGAAACctgttttattac-aaaataagtcatttttaaattaccttgTCACTTACATTGGGTTTAGCTTCTCTTAATTTGCAACATGAATTATcatatttta-tcttcaaaatattgaACAGAGAATCAATGCCAAGGCAATATTACCCTTAAAAcactactgtttt--aaaaaatattcagctATTAGACTTGTCCCAAATAAATAACCTTTCTAGCATGTTCATGTATAACTAAGACAGTGTGTATAAGCCTTGAAGT-GTTACAAAAGCTATAGGACT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135405449 410 + 135778131 TCTTGACATAAGACACATGAAA----------------------------------------------GTTGGTG-A--TTTCAAAAAAGTTTCCCAGTTTCTTCAGCAATAGCTCATGCAGTCAGTGCAGTCAAGCAAAATAGATGAGTTCTCAGCTAAGACTAAACTATAGAAGAGACGG-----ACGAAACCTGTTTTATTAC-AAAATAAGTCATTTTTAAATTACCTTGTCACTTACATTGGGTTTAGCTTCTCTTAATTTGCAACATGAATTATCATATTTTACTCCTCAAAATATTGAACAGAGAATCAATGCCAAGGCAATATTACCCTTAAAACACTACGGTTTT--AAAAAATATTCAGCTATTAGACTTGTCTCAAATAAATAACCTTTCTAGCATGTTCATTTATAACTAAGAAAGTGTGTATAAGTCTTGAAGT-GTTACAAAAGCTGTAGGACT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190509267 413 - 190850796 TCTTGACTGAAGACACATAAAA----------------------------------------------GTTGGAACA--TTTCAAAAAACTTTTCCAATTTCTTCATCAATAGCTCATCCAGTTGGTGCAGTAAAGTAAAATAGATGAGTTCTCAGAGAAGACTAAGCTACAGAAGAGACGA-----ACGAAATTTGTTTTATTACTGAAATAAGTCATTTTTAAATTACCTTGTCATTTAAATTGGGTTTAGCTTCTCTTAATTTGCAACATGAATTACCATATTTTACTCTTCAAAATATTGAACAGAGAATCAATGCCAAGGCAATATTACATATAAAACACTACCCTTTTTTTTATAATGTTCAGCTATTAAACTTGTCTCAAATAAATAACTCTTCTAGCATGTTCATTTATAACCAAGAAAGTGT-TGTAGGTCTTAAAGT-ATTATAAAACCTGTAGGACT
i calJac3.chr3             I 310 C 0
s mm10.chr8                 87637937 385 - 129401213 TCCAGACAGGA-ATTTATAAGC----------------------------------------------ATGGTAG-A--TTTCAAAAGAATGCTCCAATTGTTTCATCAC----------------TGCAGTGAA--AGAAAAGATGAATTCTTAGATAAGAGTCCATTAAAGAAGACACAGTCTAAATTAAGCTTCCTTTATTGCTGAAATAAGTCA-TTTCAAATTACCTTGTCTTTTAAACTAGGTTTAGTGTGTCTTAATTTACAGCACGAATGATCATATTTTAATCTCCAAAATACTCAACAGAGAATCTCTGCCAAAGCAAAATTACACTTAAAATACTACCACTTT-CTCTAA--CTTTGGCAATTCAATCTGTCT----TAAGCAACACTTCTCACGTGTGGCTACATGACTAAAATAGTGGGAGTTCTTCCTAA------CACACAAGTTATAGAAT-
i mm10.chr8                C 0 C 0
s canFam3.chr16             17946063 461 -  59632846 TCTTGACATAAAACTCAAAAAATTACTGGTGAGttttttaaaattattttgtattattattatattttGCTGGTG-ATTTTTTAAACATATTTCCCAGTTCTTTCATCAGTGGCTCATCTAGCCACCCCAGTAAAGTAGAAAAGATGAGTGTGCAGATAAGACTAGGTTATAGAAGAGAAAATCTAGATTAAACTTGTGTTATTACTGAAATAATTCACTTCTAAATTACCTTGTCACTTAAATTTGGTTTAGTTTTTCTTAATTTGCAACATGAATTATCATATTTTAATCTTCAAAATATTGAACAGAGAGTCAATGCCAAAGCAAAATTACATTTAAAACACTACCTTTTT------TATAGTTAGCTATTAGACTTGTCTCCAATAAATAACTCTTCTAGCACGTTTATATATAACTAAGAAAGTATGTGTAGTTCCTTAAGTAATAACACAAGTTAAAGGAAT
i canFam3.chr16            C 0 C 0
e macFas5.chr5             189034578   0 + 189454096 C
e rheMac3.chr5             183650562 108 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=236592.000000
s hg38.chr4_KI270925v1_alt    269564 217 +    555799 TGCTCTCAGCTAAAGAAACCACGGTTTAGGCATGCATGGGC----------------------ATTATTATCTCAGCAACAACAACAAAAATGTTAA--------CTTACAGAAATATTTTGTTAACAACTTAGGT-AACCAAGCTTTTAAATGCAATATAAAGCAATCTTTGAAAG---TGCTTTAGTGTGAGGAACAA-------------------------AGCATTGAAT------------------AATA----TAG-----------CTAACGCTAAAAGT---------CATTAGAAG---CCATTATATTT
s panTro4.chr4             192963679 217 + 193495092 TGCTCTCAGCTAAAGAAACCACGGTTTAGGCATGCATGGGC----------------------ATTATTATCTCAGCAACAACAACAAAAATGTTAA--------CTTACAGAAATATTTTGTTAACAACTTAGGT-AACCAAGCTTTTAAATGCAATATAAAGCAATCTTTGAAAG---TGCTTTAGTGTGAGGAACAA-------------------------AGCATTGAAT------------------AATA----TAG-----------CTAACGCTAAAAGT---------CATTAGAAG---CCATTATATTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198050619 217 + 198332218 TGCTCTCAGCTAAAGAAACCACGGTTTACGCATGCATGGAC----------------------ATTATAATCTCAGCAACAACAACAAAAATGTCAA--------CTTACAGAAATATTTTGTTAACAACTTAGGT-AACCAAGCTTTTAAATGCAATATAGAGCAATCTTTGAAAG---TGCTTTAGTGTGGGGAACAA-------------------------AGCATTGAAT------------------AGTA----TAG-----------CTAATGCTAAAAGT---------CATTAGAAG---CCATTATATTT
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178459076 217 + 178775436 TGTTCTCAGCTAAAGAAACCACGGTTTAGGCATGCATGGGC----------------------AGCATTATctcagcagcaacaacaaaaatgtaaa--------cttacagaaatattttgttaACAACTTAGGT-AACCAAGCTTTTAAATGCAATATAAAGCAATCTTTGAAAG---TGCTTTAGTGTGAGAAACAA-------------------------AGTATTGAAT------------------AGTA----TAG-----------CTAACGCTAAAAGT---------CATTAGAAG---ccattatattt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135405859 217 + 135778131 TGCTCTCAGCTAAAGCAACCACGGTTTAGGTATGCATGGGC----------------------AGTATTATCTCAGCAGCAGCAACAAAAATGTAAA--------CTTATGGAAATATTTTGTTAACAGCTTAGGT-AACCAAGCTTTTAAGTGCAAGATAAAGCAATCTTTGAAAG---TGCTTTCGTGTGAGAAACAA-------------------------AGTATTGAAT------------------AGCA----CAG-----------CTAACGCTAAAAGT---------CATTAGAAG---CCATTATATTT
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87638322 312 - 129401213 TTCTATTAGCTAACAAAACGACAgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtACGTAAAACATCACCTCAACAGAAAAAAGAAAGAGAGAAAACAATTCTCTTGCAGAAATATTTGGCTAACCATTTAAACAAAACAAGGTTTCACAGGTGAAACAAAGCAATCTC--AAAG---ACATTTAATGTTTGGGAAAACTGCTGGATGGGtattattaaatataatattaaatattaggtatattttaataagta----tagattcattaaatctaatactaaatattaaagataatattaaaaaGTTCACTTAAATAA
i mm10.chr8                C 0 C 0
s canFam3.chr16             17946524 217 -  59632846 TGCTTTCAGCTAAAGAAGCCACAGTTTATGCATGGCGGAAT----------------------A--ATTATTTCAACA--AACAACAATA---------------CTCACAGAAATATTTGGTTAACAATTTATGT-AACCAATCATTTAAATGTAAAACAAAGTAATCTTTGAAAGCTATTATTTAGTGGGAGGGGAAA-------------------AAGTAAAGCATTTAAC------------------AACACATTTAG-----------CCAATGCTAAAA-T---------CA-TAGAAG---TTATTAGGTTT
i canFam3.chr16            C 0 I 187
e calJac3.chr3             190509680   0 - 190850796 C
e macFas5.chr5             189034578   0 + 189454096 C
e rheMac3.chr5             183650562 108 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=75019.000000
s hg38.chr4_KI270925v1_alt    269781  97 +    555799 TAAACTATCACGAACAACAG---CT-----AAAAAAAATT--------------------------------------CAGTAGACTGAGTCTCCACTTAGTTAATGAAGCACGTGTTTCTACA-------------------------TGTTCCATGAATATAACAA
s panTro4.chr4             192963896  96 + 193495092 TAAACTATCACGAACAACAG---CT------AAAAAAATT--------------------------------------CAGTAGACTGAGTCTCCACTTAGTTAATGAAGCACGTGTTTCTACA-------------------------TGTTCCATGAATATAACAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198050836  98 + 198332218 TAAACTATCATGCACAAAAA---CTG----AAAAAAAATT--------------------------------------CAGTAGACTGAGTCTCCACTTAGTTAATGAAGCATGTGTTGCTACA-------------------------TGTTTCATGAATATAACAA
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178459293  95 + 178775436 taaactatcatgaacaa------cta----aaaaataatt--------------------------------------cagtagACTGAGTCTCCACTTAGTTAATGAAGCACCTGTTTCTACA-------------------------TGTTCCATGAATATAACAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135406076  95 + 135778131 TAAACTGTCATGAACAA------CTA----AAAAATAATT--------------------------------------CAGTAGACTGAGTCTCCACTTAGTTAATGAAGCACCTGTTTCTACA-------------------------TGTTCCATGAATGTAACAA
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87638634 167 - 129401213 TAGTTTTTCAATAAAAAGGGATTCTACAATACAAAATATTATAAAACACATAGTTGTGTAATGCTGAGTCCCCTTACACAGTAAGTGAAGTCTCTCCTTAGTGTACTGACTGCTTCCTTCCTCAGGAGCTGGGTCTCCTCTTTCTTAATTGTCCCACAAAGGCAACA-
i mm10.chr8                C 0 C 0
s canFam3.chr16             17946928  88 -  59632846 TAAAATATCATGAACAGGAGAT-CT-----TAAAAAAATT--------------------------------------CCATACACTGAACCCCACTCTTGCTAATGCA-------TTCCTACA-------------------------TGTTC----AAGGTAACAA
i canFam3.chr16            I 187 C 0
e calJac3.chr3             190509680   0 - 190850796 C
e macFas5.chr5             189034578   0 + 189454096 C
e rheMac3.chr5             183650562 108 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=861572.000000
s hg38.chr4_KI270925v1_alt    269878 633 +    555799  
s panTro4.chr4             192963992 632 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198050934 611 + 198332218  
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178459388 621 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135406171 616 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190509680 622 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87638801 634 - 129401213  
i mm10.chr8                C 0 I 1979
s canFam3.chr16             17947016 627 -  59632846  
i canFam3.chr16            C 0 C 0
e macFas5.chr5             189034578   0 + 189454096 C
e rheMac3.chr5             183650562 108 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=113006.000000
s hg38.chr4_KI270925v1_alt    270511  97 +    555799 CATTATAATCTCTCTATAGTT----------------------------------AATATGC---------TAACATTGTGAGGTAAG---ATAAATGCCCTTT---------GAAACTCGAATGTAAACACACTCTTTCTAGAGTTAACCA
s panTro4.chr4             192964624  97 + 193495092 CATTATAATCTCTCTATAGTT----------------------------------AATATGC---------TAACATTGTGAGGTAAA---ATCAATGCCCTTT---------GAAACTCGAATGTAAACACACTCTTTCTAGAGTTAACCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198051545  97 + 198332218 CATTATAATCTCTCTGTAGTT----------------------------------AATATGC---------TAACATTGTGAGGTAAG---ATAAATGCCTTTT---------GAAACTCGAATGTAAACACACTCTTTCTAGAGTTAACCA
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178460009 106 + 178775436 CCATATAATCTCTTTATAGTT----------------------------------AATACTCTAATACGCTTAACATTGTGAGGTAAG---ATCAATGCCCTTT---------GAAACTCGAATGTAAACACACTCTTTCTAGAGTTAACCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135406787 106 + 135778131 CCATACAATCTCTTTATAGTT----------------------------------AATACTCTAATACTCTTAACATTGTTAGGTAAG---ATCAATGCTCTTT---------GAAAGTCGAATGTAAACACTCTCCTTCTAGAGTTAACCA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190510302 131 - 190850796 CCATGTAACGTCTTTATAGTTGAAGTGTATGTGTAATAGATCATGTCTAAATGACAATACTC---------TAACATTGTGGGGTAAA---ATCAACACCCTTT---------GAAACTCAAATGTAAACACACTCTTTCTAGAGTCAACCA
i calJac3.chr3             C 0 I 671
s canFam3.chr16             17947643 142 -  59632846 TCATATCATTTCTTTACATTTGAGCTACATATGCAATAGATCATCTCTAAATGACAAAAATC---------CAACATTCTAAGGGAAGATCATCAATGTTTTTTGATGATGTGGACACTTGAATG-GGACACAGCCTCTCTAGAATTAGCAA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87639435 1979 - 129401213 I
e macFas5.chr5             189034578   0 + 189454096 C
e rheMac3.chr5             183650562 108 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=172267.000000
s hg38.chr4_KI270925v1_alt    270608 186 +    555799 GTGTTATTTTTATACCTTGCTTCAACCTTTCCACACCTCCACCCGCCAACAACCCTCCCCTAAACATGACTCCCTCCTGCTTCATTCCAGGTGGATGGCCCTTTAAGCTTTCACTAGGTGCAAGTATCTTGACTGTGTAACTCACAGCCTGGCAGAGCAGCTGGTTTCAGGAGTGATAACACCAGT
s panTro4.chr4             192964721 186 + 193495092 GTGTTATTTTTATACCTTGCTTCAACCTTTCCACACCTCCACCTGCCAACAACCCTCCCCTAAACATGACTCCCTCCTGCTTCATTCCAGGTGGATGGCCCTTTAAGCTTTCACTAGGTGCAAGTATCTTGACTATGTAACTCACAGCCTGGCAAAGCAGCTGGTTTCAGGAGTGATAACACCAGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198051642 183 + 198332218 GTGTTATTTTTATACCTTGCTTCAACCTTTCCACACTTCCACCTGCCAACAACCCTCCCCTAGACATGACTCCCTCCTGCTTCATTCCAGGTGGATGGCCCTTTAAGCTTTCACTAGGGG-AAGCATCTTGACTGTGTAACTCACAGCCTGGCAAAGCGGCTGGTTC--AGAGTGATAACACCAGT
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178460115 185 + 178775436 CTGTTATTTTTATACCTGGCTTCAACCTTTCCACACCTCCACCCGCCAACAACCCTCCCCTAAGCATTACTCCCTCCTGCTTCATTCCAGGTGGATGACCGTTTAAACTTTCGCTAGGTACAAGTATCTTGA-TGTGTAACTCACAACCCGGCAAAGCAGTGGGTTTCAGGAGTGATAACACCAGT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135406893 185 + 135778131 GTATTATTTTTATACCTTGCTTCACCCCTTCCACACCTCCACCCGCCAACAACCCTCCCCTAAGCATTACTCCCTCCTGCTTCACTCCAGGTGGATGGCCGTTTAAGCTTCCGCTAGGTACAAGTATCTTGA-TGTGTAACTCACAACCTGGCAAAGCAGCGGGTTTCAGGAGTGATAACACTAGT
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17947785 182 -  59632846 ACATTATCTTTACACACTGGTTCCACTTTCCCACACTGCC-CTGGTCAAC-TCTGCACCCTGTACAGTATCCCCTTCTGCATC-TATAAAGCAGATGACCCTTTAAGGCCTTGCCAGATGAAACTCTCCTCACAGATAAAGTCACAGGGTGA-AGAGCAGCTAGCTTCATGAGTGATAACCCCAGT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87639435 1979 - 129401213 I
e calJac3.chr3             190510433 671 - 190850796 I
e macFas5.chr5             189034578   0 + 189454096 C
e rheMac3.chr5             183650562 108 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=10192.000000
s hg38.chr4_KI270925v1_alt    270794 13 +    555799 CACTACAAGGTTA
s panTro4.chr4             192964907 13 + 193495092 CACTACAAGGTTA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198051825 13 + 198332218 CACTACAAGGTTA
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178460300 13 + 178775436 CATTAAAAGGTTA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135407078 13 + 135778131 CATTAAAAGGTTA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87639435 1979 - 129401213 I
e canFam3.chr16             17947967  0 -  59632846 C
e calJac3.chr3             190510433 671 - 190850796 I
e macFas5.chr5             189034578  0 + 189454096 C
e rheMac3.chr5             183650562 108 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=167922.000000
s hg38.chr4_KI270925v1_alt    270807 169 +    555799 CA---ATGTT---TC--TTCTAAAGGGCAGGGGCTTCCCAGAAAATTTCATTCATGCTCTCAGTTCTGCCTGTGGGGTAA-AGCGAACTAATTTTACTCAGTCTTCTGTGTAAAAGCtgctacccttccaatgtttgtcc-ctccaaaactcatgttgaaatttcactgtcattgtgat
s panTro4.chr4             192964920 169 + 193495092 CA---ATGTT---TC--TTCTAAAGGGCAGGGACTTCCCAGAAAATTTCATTCATGCTCTCAATTCTGCCTGTGGGGTAA-AACGAACTAATTTTACTCAGTCTTCTGTGTAAAAGCTGCTACCCTTACaatgtttgtcc-ctccaaaactcatgttgaaatttcactgtcattgtgat
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198051838 170 + 198332218 CATGTTTTCT---TC--TTCTAAAGGGCAGGGGCTTTCTCAGAAATTCCGTTCATGCTCTCAGTTCTGCCTGTGGGGT-A-AGCGAACT-ATTTTACTCAGTCTTCTGTGTAAAAGCtgctacccttccaatgtttgtcc-ctccaaaactcatgttgaaatttcactgtcattatgat
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178460313 174 + 178775436 CA---ATGTTTCCTC--TTCTAAAGAACGGAGGCTTCCCAGCAAATTTCATTCATGCTCTCAGTTCTGCCTGTGGGGTAACAGTGAACTGAGTTTACTCAGTCTTCAGTGTAAAGGCGGCTACGGTTGCAAAGTTTGTCCACTCCAAAACTCATGGTGAAATTTCACTGTCATTGTGAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135407091 174 + 135778131 CA---ATGTTTCCTC--TTCTAAAGGGCAGAGGCTTCCCAGCAAATTTCATTCATGCTGTCAGTTCTGCCTGTGGGGTAACAGTGAACTGAGTTTACTCAGTCTTCAGTGTAAAGGCGgctacgattccagagtttgtccccgccaaaactcatgttgaaatgtcactgtcattgtgat
i chlSab2.chr7             C 0 I 1512
s calJac3.chr3             190511104 172 - 190850796 ca---acatt---ttaaTTTTAAAGGGCAGGGgcttcctagtagatttcactcctgccctcagttctgcctgtggggtac-agcgaactcagcttactcagtcttctatgtaaaagctgctttcgtttcaatgctcgtcccttccaaaactcaagttgaaacttaattgtcattgtgat
i calJac3.chr3             I 671 C 0
e mm10.chr8                 87639435 1979 - 129401213 I
e canFam3.chr16             17947967   0 -  59632846 C
e macFas5.chr5             189034578   0 + 189454096 C
e rheMac3.chr5             183650562 108 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=14792.000000
s hg38.chr4_KI270925v1_alt    270976 21 +    555799 gatatt-gggaggtgggacctt
s panTro4.chr4             192965089 21 + 193495092 gatatt-gggaggtgggacctt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198052008 22 + 198332218 gatattggggaggtgagacctt
i ponAbe2.chr4             C 0 I 13
s papAnu2.chr5             178460487 21 + 178775436 GATATT-GGGACGTGGGCCCTT
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190511276 21 - 190850796 gatact-gggaggtggtacctt
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87639435 1979 - 129401213 I
e canFam3.chr16             17947967  0 -  59632846 C
e chlSab2.chr7             135407265 1512 + 135778131 I
e macFas5.chr5             189034578  0 + 189454096 C
e rheMac3.chr5             183650562 108 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=20883.000000
s hg38.chr4_KI270925v1_alt    270997 67 +    555799 taagaggggcttagatcatgaggtctctgccttcctgaatgagctagtgctg-tta-tgcagaaacagg
s panTro4.chr4             192965110 67 + 193495092 taagaggtccttagatcatgagggctctgccttcgtgaatgagttagtgctg-tta-tgcagaagcagg
i panTro4.chr4             C 0 C 0
s papAnu2.chr5             178460508 68 + 178775436 TAAGAGGTGCTTAGGTCATGAGGGCGCTACCTTCAAGAAAGAGCTAGGGCCGTTTA-CGCAGAAGCAGG
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190511297 65 - 190850796 taagaggtgcttcggtcctgagggcgctgccttcatgcatgagctgctgctc-ttattgcggaagg---
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87639435 1979 - 129401213 I
e canFam3.chr16             17947967  0 -  59632846 C
e chlSab2.chr7             135407265 1512 + 135778131 I
e macFas5.chr5             189034578  0 + 189454096 C
e rheMac3.chr5             183650562 108 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198052030 13 + 198332218 I

a score=1857.000000
s hg38.chr4_KI270925v1_alt    271064 7 +    555799 tctccct
s panTro4.chr4             192965177 7 + 193495092 tctccct
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198052043 1 + 198332218 ------t
i ponAbe2.chr4             I 13 C 0
s papAnu2.chr5             178460576 7 + 178775436 CCTCTTT
i papAnu2.chr5             C 0 I 856
s calJac3.chr3             190511362 7 - 190850796 tctctgt
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87639435 1979 - 129401213 I
e canFam3.chr16             17947967 0 -  59632846 C
e chlSab2.chr7             135407265 1512 + 135778131 I
e macFas5.chr5             189034578 0 + 189454096 C
e rheMac3.chr5             183650562 108 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=22901.000000
s hg38.chr4_KI270925v1_alt    271071  95 +    555799 ctccctctccctcttcctctccccctccctc------tccccctccattccccccctcttccctctctttgctctttctccatgtggtgtctt---catgtcac
s panTro4.chr4             192965184  99 + 193495092 ctccctctccctcttcctctccccctccctctccccttccccctccattccccccctcttccctctc--tgctctttctccatgtggtgtctt---cgtgtcat
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198052044 100 + 198332218 ctccctctccctcttcctctccccctccctctccccctccccctccatt-cccccctcttccctctctttgctctttctccatgtggtgtctt---catgtcat
i ponAbe2.chr4             C 0 C 0
s calJac3.chr3             190511369  46 - 190850796 ------------------------------------------------------cttcctccctctctttgctcctcc----tgggacttcttctccatgttat
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87639435 1979 - 129401213 I
e canFam3.chr16             17947967   0 -  59632846 C
e chlSab2.chr7             135407265 1512 + 135778131 I
e papAnu2.chr5             178460583 856 + 178775436 I
e macFas5.chr5             189034578   0 + 189454096 C
e rheMac3.chr5             183650562 108 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=9502.000000
s hg38.chr4_KI270925v1_alt    271166 11 +    555799 agcacagcaag
s panTro4.chr4             192965283 11 + 193495092 agcacagcaag
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198052144 11 + 198332218 agcacagcaag
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178461439 11 + 178775436 AGCACAGCAAg
i papAnu2.chr5             I 856 C 0
s calJac3.chr3             190511415 11 - 190850796 aatacagcaag
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87639435 1979 - 129401213 I
e canFam3.chr16             17947967  0 -  59632846 C
e chlSab2.chr7             135407265 1512 + 135778131 I
e macFas5.chr5             189034578  0 + 189454096 C
e rheMac3.chr5             183650562 108 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=281451.000000
s hg38.chr4_KI270925v1_alt    271177 246 +    555799 aaggcctttgtcagatgccggcccctcaattctggattttccagcctccagaaatgtgagtcaataaatttctgttcattataaattacccagtctgtggtattccattatatatagcag--gaaaaatggactaaaaAGCACTCTACGGTTTAATGAAATGAGCATATTTTCTTTCCCATTTTTCTTCCGTTTCCTAGAAATAGAGATTGCAAATGGATGCCATCTACATCAATACTCATCTAGAAT
s panTro4.chr4             192965294 246 + 193495092 aaggcctttgtcagatgccggcccctcaattctggtttttccagcctccagaaatgtgagtcaataaatttctgttcattataaattgcccagtctgtggtattccattatatatagcag--gaaaaatggactaaaaAGCACTCTACGGTTTAATGAAATGAGCATATTTTCTTTCCCATTTTTCTTCCGTTTCCTAGAAATAGAGATTGCAAATGGATGCCATCTACATCAATACTCATCTAGAAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198052155 246 + 198332218 aaggcctttgtcagatgccggcccctcaattctggattttccagcctccaggaatgtgagtcaataaatttctgtccattataaattacccagtctgtggtattccattatatatagcag--gaaaaatggactaaaaAACACTCTATGGTTTAATGAAATTAGCATGTTTTCTTTGCCATTTTTCTTCCATTTCCTAGAAATAGAGATTGCAAATGGATGCCATCTACATCAATATTCATCTAGAAT
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178461450 246 + 178775436 aaggcctttgtcagatgctgGCCCCTCGATtctggactttccagcctccagaaatgtgagtcaataaatttctgttcattttaaattaaccagtc--tggtattccattatatatagcAGCaaaaaaaTGGACTAAAAAGCACTCTACAGTTTAATGAAATTAGCAtattttctttgccatttttcttccctttcttagAAATAGAGATTACAGAGGGATGCCATCTATATCAATACTCATCTAGAAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135408777 245 + 135778131 aaggcctttgtcagatgcccgcccct-gattctggactttccagtctccagaaatgtgagtcaataaatttctgttctttttaaattaaccagtc--tggtattccattatatatagcagcaagaaaatggactaaaaAGCACTCTACAGTTTAATGAAATTAGCATATTTTCTTTCCCATTTTTCTTCCCTTTCTTAGAAATAGAGATTACACAGGGATGCCATCTATATCAATACTCACTTAAAAT
i chlSab2.chr7             I 1512 I 7
s calJac3.chr3             190511426 243 - 190850796 gaggcctttgtcacatggcggcccctcaattttagactttccagcccccagaaatgtgagttaataaatttttgttcattataaattacccagcctgtggtattccgt----gatagcaac-aaaaaatggactgaaaggtactttacattttaatgaaattggcatattttctttcccatttttcttccccTTCCCAGAAATAGAAATTGCATATGGATGCCATCCACACCAATACTCCTCTAGAAT
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87639435 1979 - 129401213 I
e canFam3.chr16             17947967   0 -  59632846 C
e macFas5.chr5             189034578   0 + 189454096 C
e rheMac3.chr5             183650562 108 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=1614.000000
s hg38.chr4_KI270925v1_alt    271423 17 +    555799 CTAATTACATCTAGAAT
s panTro4.chr4             192965540 17 + 193495092 CTAATTACATCTAGAAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198052401 12 + 198332218 CTAATTACAGT-----T
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178461696  7 + 178775436 -----TACAGTT-----
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190511669 12 - 190850796 CCAATTACAGTT-----
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87639435 1979 - 129401213 I
e canFam3.chr16             17947967  0 -  59632846 C
e chlSab2.chr7             135409022  7 + 135778131 I
e macFas5.chr5             189034578  0 + 189454096 C
e rheMac3.chr5             183650562 108 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=78290.000000
s hg38.chr4_KI270925v1_alt    271440 77 +    555799 CTCTCAGCCATTCAGtgtttcgtttatctatttctacattaaaatatactcccaaaataaatgactcaagccagcag
s panTro4.chr4             192965557 77 + 193495092 CTCTCAGCCATTCAGtgtttcgtttatctatttctacattaaaatatactcccaaaatgaatgacttaagccagcag
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198052413 77 + 198332218 CTTTCAGCCATTCAGtgttttggttatctatttctaggttaaaatatactgccaaaatgaatgacttaacccagcag
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178461703 77 + 178775436 CTTTCAGCCATTCAGTGTTTCAGTTACCTATTTCTACATTAAAATCTGCTCCCCAAATGAATGACTTAAACCAGCAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135409029 77 + 135778131 CTTTCAGCCATTCAGtgtttcagttacctatttctacattaaaatctgctgcccaaatgaatgacttaaatcagcag
i chlSab2.chr7             I 7 C 0
s calJac3.chr3             190511681 70 - 190850796 CTTTCAGTCATTCAGTG------ACATCTGTTTCTACATTAAAGTC-ACTCTCAAAGTTAATGACTTAAACCAGCAG
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87639435 1979 - 129401213 I
e canFam3.chr16             17947967  0 -  59632846 C
e macFas5.chr5             189034578  0 + 189454096 C
e rheMac3.chr5             183650562 108 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=271321.000000
s hg38.chr4_KI270925v1_alt    271517 128 +    555799 cttattagtgtatttcatcgttttgtggTTTGACTGGCCTTATCATAGTTGTTGATTGGAATCTCCCAAGTGGTTGCAAGTTAGACGGCAGTGTGACCAGAACCATCTGAAAGCTCACGTGGG------------GTGGC
s panTro4.chr4             192965634 128 + 193495092 cttattagtgtatttcatcgttttgtggtttgactggccttatcatagttgttgattggaatctcccaagtggttgcaagttagacggcagtgggactagaaccatctgaaagctcacgtggg------------gTGGC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198052490 128 + 198332218 cttattagtgtatttcatcgttttgtggtttgactggtcttatcgtagttgttgattagaatctcccaagtggttgcaagttagacggcagtggggctagaaccatctgaaagctcacgtggg------------gTGGC
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183650670 128 + 184069350 CTTATTAGTGTATTTCATTGTTTTGTGGTTTGATTGACTTTATCATCGTTGTTGATTAGAAGCTCCCAAGTGGTTGCAAGTTAGATGGCAGTGGGACTAGAACCATCTGAAAGCTCACGTGCG------------GTGGC
i rheMac3.chr5             I 108 C 0
s macFas5.chr5             189034578 128 + 189454096 CTTATTAGTGTATTTCATTGTTTTGTGGTTTGATTGACTTTATCATCGTTGTTGATTAGAAGCTCCCAAGTGGTTGCAAGTTAGATGGCAGTGGGACTAGAACCATCTGAAAGCTCACGTGCG------------GTGGC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178461780 128 + 178775436 CTTATTAGTGTATTTCATCGTTTTGTGGTTTGATTGACTTTATCATAGTTGTTGATTAGAAGCTCCCAAGTGGTTGCAAGTTAGATGGCAGTGGGACTAGAACCATCTGAAAGCTCACGTGCA------------GTGGC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135409106 128 + 135778131 cttattagtgtatttcatcattttgtggTTTGATTGACTTTATCATAGTTGTTGATTAGAAGCGCCCAAGTGGTTGCAAGTTAGATGGCAGTGGGACTAGAACCATCTGAAAGCTCACGTGCG------------GTGGC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190511751 129 - 190850796 CTCATTAGTTTATTTCATCGTTCTCTGGTTTGACTGGCCTTA---TAGTTGATGATTAGAATCTCCCAGGT-------AGTTAGACAGCAGTGGGGCTGGAGTCATCCGGAAGC-CACGTGGACGCGTCTCCAGCCTGGG
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87639435 1979 - 129401213 I
e canFam3.chr16             17947967   0 -  59632846 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=182583.000000
s hg38.chr4_KI270925v1_alt    271645 74 +    555799 CTCTTCACTCACCTCAGCCATCCTTCCCCCCACT-GCCTCCACATGTG---CTCTCAGTCTCCAAGGAAATTGCCACT
s panTro4.chr4             192965762 74 + 193495092 CTCTTCACTCACCTCAGCCATCCTTCCCCCCACT-GCCTCCACATGTG---CTCTCAGTCTCCAAGGAAATTGCCACT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198052618 74 + 198332218 CTCTTCACTCACATCAGCCGTCCTTCCCCCCACT-GCCTCCACATGTG---CTCTCAGCCTCCAAGGAAATTGCCACT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183650798 74 + 184069350 TTCTTCACTCACCTCAGCCATCCTTCCCCCAACT-GCCTCCACATGTG---CTGTCAGTCTCCAAGGAAATTGCTACT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189034706 74 + 189454096 TTCTTCACTCACCTCAGCCATCCTTCCCCCAACT-GCCTCCACATGTG---CTGTCAGTCTCCAAGGAAATTGCTACT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178461908 74 + 178775436 TTCTTCACTCACCTCAGCCATCCTTCCCCCAACT-GCCTCCACATGTG---CTCTCAGTCTCCAAGGAAATTGCTACT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135409234 74 + 135778131 TTCTTCACTCACCTCAGCCATCCTTCCCCCAGCT-GCCTCCACACGTG---CTCTCAGTCTCCAAGGAAATTGCTACT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190511880 78 - 190850796 GTCTTCACTCCCCTCCATGACCCTTCCCCCGACTGGCCTCCACATGTGCTCCTCTCCAACTCTAAGGAAACTGCCACT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17947967 74 -  59632846 CCCTTTACTCACTTCATTGATCCTTGTTCCCTCT-CTCTCCATCTGCC---TTCTCAATCTCTCAGAGAGTTATAACT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87639435 1979 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=471821.000000
s hg38.chr4_KI270925v1_alt    271719 249 +    555799 TGGCTTGGAC------------------------------------------tt-ttttttttttttttttgacggagtcttgctctgtcgcccaggctggagtgcaatgacgtgatcttggctcactgcaacctctgcctcccaggttccagtgattcccctgcttcagcctcgcaagtagctgggattacagccagctgccatcatgcctggctcatgtttgtatttttgtagagac-ggggtttcaccatgttggccaggctggtctcgaacccctgacctc--atgatcAg
s panTro4.chr4             192965836 249 + 193495092 TGGCTTGGAC------------------------------------------tt-ttttttttttttttttgatggagtcttgctctgtcgcccaggctggagtgcaatgacgtgatctcagctcgctgcaacctctgcctcctgggttccagtgattctcctgcttcagcctcacaaatagctgggattacaggcagctgccatcatgcctggctcatgtttgtatttttgtagagat-ggggtttcaccatgttggccaggctggtcttgaacccctgacctc--gtgatTGg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198052692 247 + 198332218 TGGCTTGAAC---------------------------------------------ttttttttttttttttgacggagtcttgctctgttgcccaggctggagtgcaatgacgtgatcttggctcactgcaaactctgcctcccgggtttcagtgattctcctgcttcagcctcacaagtagctgggattacaggtgcccaccaccatgcctggctcatgtttgtatttttgtagagac-ggggtttcaccatgttggccaggctggtctcgaaatcctgacctc--gtgatcAG
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183650872 254 + 184069350 CAGCTTGGACTCTT-------------------------ttttcttttcttttc-ttttcttttcttttttgacagagtcttgctctgtcacccaggctggagtgcaatgaggtgatcttggctcactgcaactttcgcctcctgggttccagcgattgtcctgcctcagcctcctgagtagctggaattacaggcagcc------------ggctcgtttttgtatttttgtagagac-ggagtttcaccatgttggccaggctggcctcgaactcctgacgtc--gtgatccg
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189034780 279 + 189454096 CAGCTTGGACTCTTttttcttttcttttcttttcttttcttttcttttcttttc-ttttcttttcttttttgacagagtcttgctctgtcacccaggctggagtgcaatgaggtgatcttggctcactgcaactttcgcctcctgggttctagcgattgtcctgcctcagcctcccgagtagctggaattacaggcagcc------------ggctcgtttttgtatttttgtagagac-ggagtttcaccatgttggccaggctggcctcgaactcctgacgtc--gtgatccg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178461982 264 + 178775436 AGGCTTGgac-----------------------------ttgacttttcttttctttttttttttttttttgacagagtcttgctctgtcgcccaggctggagtgcaaggacatgatcttggctcactgcaaccttcgcctcctgggttccagggattctcttgcctcagcctcctgagtagctgaaattacaggcagccaccatcatgcctggctcatttttgtatttttgtagaaacaggagtttcaccatgttggccaggctggtctcgaactcctcacgtC--GTGATCGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135409308 252 + 135778131 CAGCTTGGAC---------------------------------------ttttc-ttttcttttcttttttgacagagtcttgctctgtcacccaggctggagtgcaatgaggtgatcttggctcactgcaaccttcacctcctgggttccagcgattctcctgcctcagcctcccgagtagctggaattataggcagccaccaccatgcccagctcgtttttgtatttttgtagagac-ggagtttcaccatgttggccaggctggtctcgaactcctgacgac--gtgatccg
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190511958 243 - 190850796 TAGCTGGGCC-------------------------------------------------tttttattttttgatggagtctcattctgtcacccaggctggagtgcagtgacacaatctcggctcaatgcagcctccgcctcc-aggtttaagcaagtcttctgcctcagcctcccaagtagctgggattacaggctgccaacatcatgcccggctaattttta-atttttgtagagat-ggggtttcactgtgttggtcaggctggtctcaaactcctgaccccaggtgatccA
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87639435 1979 - 129401213 I
e canFam3.chr16             17948041   0 -  59632846 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=539754.000000
s hg38.chr4_KI270925v1_alt    271968 203 +    555799 tggcttggacttttaatagcttgagaat-cccaaagtggtcacacttttaacatggcagctgacttctaaagaggaggaaacagcagctttgagagcatttaagggc---------------cacagtattattttggctgtat----ttcattgctcaaagcagtcattatacttgcccctgttaaaggaggagg-agaggtagactccattgcttgataggg
s panTro4.chr4             192966085 203 + 193495092 tggcttggacttttaatagcttgagaat-cccaaagtagtcacacttctaacatgacagctgacttctaaaaagcaggaaacagaagctttgagagcatttaagggc---------------tacagtattattttggctgtat----ttcattggtcaaagcagtcattatacttgcccctgttaaaggaggagg-agaggtagactccattgcttgataggg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198052939 218 + 198332218 TGGCTTAGATTTTTAATagcttgagaat-cccaaagtactcacacttctaacatggaagctgacttctaaaaagcaggaaacagaagctttgagagcatttaagggctacacccagaactagcacagtattattttggctgtat----ttcattggtcaaagcagtcattatacttgcccctgttaaaggaggagg-agaggtagactccattgcttgataggg
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183651126 217 + 184069350 TGGCTTGGACTTTTAATagcttgagaat-cccaaagtggtcacacttctaacatggcagctgacttctaaaaagcaggaaacagaagcttcaagagcatttaagggctacaccctgaactagcacagtattattttggctttat----ttcattggtcaaagcagtcattgtacttgcctctgttaaagga-gagg-agaggtagactccattgcttgataggg
i rheMac3.chr5             C 0 I 1
s macFas5.chr5             189035059 217 + 189454096 tggcttggacttttaatagcttgagaat-cccaaagtggtcacacttctaacatggcagctgacttctaaaaagcaggaaacagaagcttcaagagcatttaagggctacaccctgaactagcacagtattattttggctttat----ttcattggtcaaagcagtcattgtacttgcctctgttaaagga-gagg-agaggtagactccattgcttgataggg
i macFas5.chr5             C 0 I 1
s papAnu2.chr5             178462246 219 + 178775436 TGGCTTGGACTTTTAATAGCTTGAGAATCCCCAAAGTGGTCACACGTCTAACATGGCAGCTGACTTCTAAAAAGCAGGAAACAGAAGCTTCGAGAGCATTTAAGGGCTACACCCTGAACTAGCACAGTATTATTTTGGCTTTAT----TTCATTGGTCAAAGTAGTCGTTGTACTTGCCCCTGTTAAAGCA-GAGACCCAACTGAATCCCATCTCTTCATAGAG
i papAnu2.chr5             C 0 I 349
s chlSab2.chr7             135409560 217 + 135778131 TGGCTTGGACTTTTAATagcttgagaat-cccaaagtggtcacacttctaacatggcagctgacttctaaaaagcaggaaacagaagcttcaagagcatttaagggctacaccctgaactcgcacagtattattttggctttat----ttcattggtcaaagcagtcattgtacttgcctttgttaaagga-gagg-agaggtagactccattgcttgataggg
i chlSab2.chr7             C 0 I 1
s calJac3.chr3             190512201 217 - 190850796 tggcttggacttttaatagcttgagaat-cccaaagtagtcacacttctaaaatggcagctgacttctaaaaagcaggaaacaggagctttgggagtatttaagggctacatccagaaccagcacagtaatattttggctgcat----ttcattggtcaaagaagttattacacttgcccctattaaggag-gagg-agaagtggactccattgcttgacaggg
i calJac3.chr3             C 0 I 1
s canFam3.chr16             17948041 216 -  59632846 TGGCATGGACTATGCACCACTTGATGGT-CCCAAGGTTGTCACCCTTCTAATGTGGCAACTGACTTAAAAGAAGCaggaagcagaaactgtgaggacatttaagggctacgcccagaactgacacaa-gtcattttggtcatacttagtttactgctc-----agtcgccgtatttgtctacacttaagggggaga-agagatagactccattacttgatggag
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87639435 1979 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=86040.000000
s hg38.chr4_KI270925v1_alt    272171 46 +    555799 tcacgtgata-aagagctt-----gtggaagacatt--gttgtgataacacttg
s panTro4.chr4             192966288 47 + 193495092 tcatgtgatagaagagctt-----gtggaagacatt--gttgtgatcacacttg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198053157 47 + 198332218 tcacatgatagaagagctt-----gtggaagacatt--gttgtgatcacacttg
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183651344 44 + 184069350 tcacgttatagaaGAGCTT-----TTGGAAGAC-----GTTGTGATCACACTTG
i rheMac3.chr5             I 1 C 0
s macFas5.chr5             189035277 44 + 189454096 tcacgttatagaagagctt-----ttggaagac-----gttgtgatcacacttg
i macFas5.chr5             I 1 C 0
s papAnu2.chr5             178462814 47 + 178775436 TCACGTTATAGAAGAGCTT-----TTGGAAGACATT--GTTGTGATCACACTTG
i papAnu2.chr5             I 349 C 0
s chlSab2.chr7             135409778 44 + 135778131 tcacgttatagaagagctt-----ttagaagac-----gttgtgatcacacttg
i chlSab2.chr7             I 1 C 0
s calJac3.chr3             190512419 43 - 190850796 tcaggt-atagaagagcct-----gtggaagaa-----attgtgatcacacatg
i calJac3.chr3             I 1 C 0
s canFam3.chr16             17948257 52 -  59632846 tcacaataccgaagagcatatgagatggaaaatatttctttgtgactatcta--
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87639435 1979 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=1045331.000000
s hg38.chr4_KI270925v1_alt    272217 364 +    555799 gttggaaaatacaatctcccacaTTCAACAAACCTTTGATGAGTGCTCTTCATGCCC-AGATACCAGGCTAATTCCTAAAGATTAGAATGTAAGTAATCCATAGTCCCTGCAAGTTAATAGTTGTAGAAGCTGAGTCACATACTACCTCCATcccct--agccttcctcacaggtactgctgtca-------------------agctactgcctgatatttacatcaatatttctttccactatagacatgactttgcttctatccctgtaaagttgtacctggttgatctcccct-tctattctaacctaaaaatctcattctgaa------tatctacctc---ttcagctgtcattatccaataagcatactgttcatattttatataaatt
s panTro4.chr4             192966335 364 + 193495092 gttggaaaatacaatctcccacaTTCAACAAACCTTTGATGAGTGCTCTTCATGCCC-AGATACCAGGCTAATTCCTAAAGATTAGAATGTAAGTAATCCATAGTCCCTGCAAGTTAATAGTTGTAGAAGCTGAGTCACATACTACCTCCATcccct--agccttcctcacaggtactgctgtca-------------------aactactgcctgatatttacatcaatatttctttccactatagacatgactttgcttctatccctgtaaagttgtacctggttgatctccccc-tctattctaacctaaaaatctcattctgaa------tatctaccac---ttcagctgtcattattcaataagcatactgttcatattttatacaaatt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198053204 364 + 198332218 gttggaaaatacaatctcccacaTTCAACAAACCTTTGATGAGTGCCTTTCATGCCC-AGATACCAGGCTAAGTCCCAATGATTAGAATGTAAGTAATCCATAGTCCCTACAAGTTAATAATTGTAGAAGCTGAGTCACATACTACCTCCATcccct--agccttcctcacaggtactgctgtca-------------------agcaactgcctgatatttacatcaatatttctttccactatagacatgactttgcttctatccctgtaaagttgtacctggttgatctcaccc-tctattctaacctaaaaatctcattctgaa------tatccacctc---ttcagctgtcattatccaataagcatagtgttcacattttatataaatt
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183651388 364 + 184069350 GTTGGAAAACACAATCTCCCACATTCAGCAAACCTTTGATGAGTGCCCTTCATGCCC-AGATACCAGGCTAATTCCTAATGATTAGAATGCAAGCAATCCATAGTCCCTGCAAGTTAATAATTGTAGCAGCTGAGTCACATACTACCTCCaacccct--aaccttcctcacaggtactgctgtca-------------------agctactgcctgatatttacatcaatatttctttccactatagccatgactttgcttctacccctgtaaagttgtacctggttgacctcaccc-tctattctaacctaaaaatctcattctgaa------tatcgacctc---ttcaactgtcattattcaataagcatactgttcatattttatgtaaatt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189035321 364 + 189454096 gttggaaaacacaatctcccacaTTCAGCAAACCTTTGATGAGTGCCCTTCATGCCC-AGATACCAGGCTAATTCCTAATGATTAGAATGCAAGCAATCCATAGTCCCTGCAAGTTAATAATTGTAGCAGCTGAGTCACATACTACCTCCaacccct--aaccttcctcacaggtactgctgtca-------------------agctactgcctgatatttacatcaatatttctttccactatagccatgactttgcttctacccctgtaaagttgtacctggttgacctcaccc-tctattctaacctaaaaatctcattctgaa------tatcgacctc---ttcaactgtcattattcaataagcatactgttcatattttatgtaaatt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178462861 361 + 178775436 GTTGGAAA--ACAATCTCCCACATTCAGC-AACCTTTGATGAGTGCCCTTCATGCCC-AGATACCAGGCTAATTCCTAATGATTAGAATGCAAGCAATCCATAGTCCCTGCAAGTTAATAATTGTAGCAGCTGAGTCACATACTACCTCCAACCCCT--AACCTTCCTCACAGGTACTGCTGTCA-------------------AGCTACTGCCTGATATTTACATCAATATTTCTTTCCACTATAGCCATGACTTTGCTTCTACCCCTGTAAAGTTGTACCTGGTTGACCTCACCC-TCTATTCTAACTTAAAAATCTCATTCTGAA------TATCGACCTC---TTCAACTGTCATTATTCAATAAGCATACTgttcatattttatgtaaatt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135409822 361 + 135778131 gttggaaaacacaatctcccacaTTCAGCAAACCTTTGATGAGTGCCCTTCATGCCC-AGATACCAGGCTAATTCCTAATGATTAGAATGCAGGCAATCCATAGTCCCTGCAAGTTAATAACTGTAGCAGCTGAGTCACATACTACCTCCaacccct--agccttcctcaccggtactgctgtca-------------------agctactgcctgatatttacatcaatatttctttccactatagccatgactttgctt---cccctgtaaagttgtacctggttgacctcaccc-tctattctaacctaaaaatctcattctgaa------tatcgacctc---ttcaactgtcattattcaataagcatactgttcatattttatgtaaatt
i chlSab2.chr7             C 0 I 34
s calJac3.chr3             190512462 383 - 190850796 gttaaaaaacacaatctgccacattaaacaaacctttgatgagtgcccttcatgccc-agatgccaggctaattcctgaggattagaatgcaagtaacccacagtccctgcAGGTGAATAATTGTAGCAGCTGACTCACATCCTACCTCCGTCCCCT--GGCCTTGCCCACAGGAACTGATGTCAGGATATTTACATCAATATCAGTAACTGcctgatactcacatagatagttcttttaactacagccataactttgcttcaacccctgtaaagctctacctggttggtctcaccc-tctaatgtaacctaaaaacctcattctgaa------tatctgcctc---ttcaactgtcgttacccgctaagcacactgtccatgctttatataaatt
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87641414 350 - 129401213 GCTGGAAA--ACAGTCTGCCATACTCCTCTAGCTTCCAACGAATGTCCTTCATGTTC-AGATGCCATGTTAGGTCCTAATGATTAAAATTCAAGTGAGTGAATGTCCCTGTCGGTAAGGAGCTTTAGCAGCTCACACATGTGCTACGTCACTCTCCA--GGCTTTACTCA---GAATTGCTGTCA-------------------TGCTA-----TGATAGTCACACTCATAGT--TTTTAGCTGTGGTTACAACTTTGCTTCT---CTTGTAAAGTTTTGCCTGATTGGTCTCATGT-TCTATTCTAACCTAAAAATCACATCTTGAA------TGTCTACCCCCCTCCCAACTCTCAATATCTAATATGCATACTTCTAACCTTTTA--CAAATC
i mm10.chr8                I 1979 C 0
s canFam3.chr16             17948309 355 -  59632846 --tgaaaaacacagtttgcACCATTCAGCCAAATTTTCATGAGTGTCCTTTATGTCCTAGGCACCAGGCTCATTTCTCATGATTAAA---------TCTCATAGTCTCAATAAGTTAAT---TTTAGCAGCTGGGTCACATACcaactttatcctctcaagtctttttcacaggaactgctgcca-------------------agctactgcatgatatttatattatttaaaacaaaaattatattcacaacttggtttctatccctataaagtttcacctagttgatctcacccttttcctttaacctcaaagtatacttctgaattctattatctacttc---tttgactctcatcatttaa-----aaaccttttacattttatataaatc
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=13467.000000
s hg38.chr4_KI270925v1_alt    272581 8 +    555799 gttcattt
s panTro4.chr4             192966699 8 + 193495092 attcattt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198053568 8 + 198332218 gttcattt
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183651752 4 + 184069350 ----attt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189035685 4 + 189454096 ----attt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178463222 4 + 178775436 ----attt
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190512845 8 - 190850796 ggtcactt
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87641764 8 - 129401213 ATTCATTT
i mm10.chr8                C 0 I 47
s canFam3.chr16             17948664 8 -  59632846 attcattt
i canFam3.chr16            C 0 C 0
e chlSab2.chr7             135410183 34 + 135778131 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=30640.000000
s hg38.chr4_KI270925v1_alt    272589 18 +    555799 tctttttca----atatgtatt
s panTro4.chr4             192966707 18 + 193495092 tctttttca----atatgtatt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198053576 22 + 198332218 tctttttcaacatatatttatt
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183651756 18 + 184069350 tctttttca----acatatatt
i rheMac3.chr5             C 0 I 15
s macFas5.chr5             189035689 18 + 189454096 tctttttca----acatatatt
i macFas5.chr5             C 0 I 12
s papAnu2.chr5             178463226 18 + 178775436 tctttttca----acatatatt
i papAnu2.chr5             C 0 I 12
s calJac3.chr3             190512853 18 - 190850796 tctttctca----acacatatt
i calJac3.chr3             C 0 I 4
s canFam3.chr16             17948672 18 -  59632846 attgattca----acacatatt
i canFam3.chr16            C 0 I 4
e mm10.chr8                 87641772 47 - 129401213 I
e chlSab2.chr7             135410183 34 + 135778131 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=8972.000000
s hg38.chr4_KI270925v1_alt    272607 10 +    555799 gagtactttc
s panTro4.chr4             192966725 10 + 193495092 gagtactttc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198053598 10 + 198332218 gagtactttc
i ponAbe2.chr4             C 0 C 0
s calJac3.chr3             190512875 10 - 190850796 gagtactttc
i calJac3.chr3             I 4 I 693
s canFam3.chr16             17948694 10 -  59632846 gagtaccttc
i canFam3.chr16            I 4 C 0
e mm10.chr8                 87641772 47 - 129401213 I
e chlSab2.chr7             135410183 34 + 135778131 I
e papAnu2.chr5             178463244 12 + 178775436 I
e macFas5.chr5             189035707 12 + 189454096 I
e rheMac3.chr5             183651774 15 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=53688.000000
s hg38.chr4_KI270925v1_alt    272617 204 +    555799 tctttttttattatactttaagttctagggcacatgtgtacaacgtgcaggtttattacatatgtatacatgtgccatattggtgtgctgcacccattaactcatcatttacattaggtatatctcctaatgctatccctcccccctccccccaccccacaacaggccccagtgtgtgatgttccccttcctgtgttcaagtgt
s panTro4.chr4             192966735 203 + 193495092 tctttttttattatactttaagttctagggcacatgtgtacaacgtgcaggtttattacatatgtatacatgtgccatattggtgtgctgcacccattaactcatcatttacattaggtatatcgcctaatgctatccct-ccccctccccccaccccacgacaggccccagtgtgtgatgttccccttcctgtgttcaagtgt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198053608 203 + 198332218 tctttttttattatactttaagttctaaggtacatgtgcacaacgtgcaggtttattacatatgtatacatgtgccatattggtgtgctgcacccattaactcatcatttacattaggtatatctcctaatgctatccct-ccccctgccccgaccccatgacaggccccagtgtgtgatgttccccatcctgtgtccaagtgt
i ponAbe2.chr4             C 0 C 0
e mm10.chr8                 87641772  47 - 129401213 I
e canFam3.chr16             17948704   0 -  59632846 C
e calJac3.chr3             190512885 693 - 190850796 I
e chlSab2.chr7             135410183  34 + 135778131 I
e papAnu2.chr5             178463244  12 + 178775436 I
e macFas5.chr5             189035707  12 + 189454096 I
e rheMac3.chr5             183651774  15 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=1536.000000
s hg38.chr4_KI270925v1_alt    272821 3 +    555799 tct
s panTro4.chr4             192966938 3 + 193495092 tct
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198053811 3 + 198332218 tct
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189035719 3 + 189454096 tca
i macFas5.chr5             I 12 C 0
s papAnu2.chr5             178463256 3 + 178775436 tCA
i papAnu2.chr5             I 12 C 0
e mm10.chr8                 87641772 47 - 129401213 I
e canFam3.chr16             17948704 0 -  59632846 C
e calJac3.chr3             190512885 693 - 190850796 I
e chlSab2.chr7             135410183 34 + 135778131 I
e rheMac3.chr5             183651774 15 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=6790.000000
s hg38.chr4_KI270925v1_alt    272824 3 +    555799 ata
s panTro4.chr4             192966941 3 + 193495092 ata
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198053814 3 + 198332218 ata
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183651789 3 + 184069350 ata
i rheMac3.chr5             I 15 C 0
s macFas5.chr5             189035722 3 + 189454096 ata
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178463259 3 + 178775436 ATA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135410217 3 + 135778131 ata
i chlSab2.chr7             I 34 C 0
s canFam3.chr16             17948704 3 -  59632846 aca
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87641772 47 - 129401213 I
e calJac3.chr3             190512885 693 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=800895.000000
s hg38.chr4_KI270925v1_alt    272827 380 +    555799 gtgaaggcattgataaaaatacatacattaaatggaacatgaacaatcacata----gccctttgttatactactagat-tctccccaaagctaatattaattcatcaacacattccgaatacagctgttccagtgaactaaaa-gctctgtaaatgtgttatatgccagcccatatttctacagctagttcataaagaaaaactatgaggctttcacaggggccatatttgctatatctgatctgtgagaaccgtatcctatc--aaaaaagg-----------------aaatagatttagtttaatgacttaatgcaaatataaacaggtcccaattgattactgttttctatt----ttagggtcttacatg----atatttg-ttttataacattttatattttATTAT
s panTro4.chr4             192966944 381 + 193495092 gtgaaggcattgataaaaatatatacattaaatggaacatgaacaatcacata----gccctttgttatactactagat-tcttcccaaagctaatattaattcatcaacacattccgaatacagctgttccagtgaactaaaa-gctctgtaaatgtgttatatgccagcccatatttctacagctagttcataaagaaagactatgaggctttcacaggggccatatttgctatatctgatctgtgagaaccgtatcctatc--aaaaaagg-----------------aaatagatttagtttaatgacttaatgcaaatacaaacaggtcccaattgattcctgttttctatt----ttagggtcttacatg----atacttgtttTTATAACATTTTATATTTTATTAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198053817 380 + 198332218 gtgaaggcattgataaaaatatatacattaaatggaacatgaacaatcactta----gccctttgtcatactgctagat-tctccccaaagctaatattaattcatcgacacatcccgaatacagctgttccagtgaactaaaa-cctctgtaaatgtgttatatgccagcccatatttctacagctaattcacaaagaaagactatgaggctttcacaggagccatatttgctatatctgatctatgagaaccgtatcctatc--aaaaaagg-----------------aaatagatttagtttaatgacttaatgcaaatataaacaggtcccaattgattactgttttctatt----ttagggtcttacatg----atatttg-ttttataacattttatattttattat
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183651792 381 + 184069350 gtgaaggcattaataaaaatatatacattaaatggaatatgaacgatcactta----accctttgtcatattactagat-tctccccaaagctaatattaattcatcaacagatgcc-aatacagctgttccagtgaactaaaa-tctctgtgaatgtgttgtatgccagcccatatttctacaactagttcacaaagaaagactatgaagccctcacaggggccatatttgctatatctgatctatgagaaccatatcctatcaaaaaaaaaa-----------------aaaaagatatagtttaatgacttaatgcaaatacaaacaggtcccaattgattaccgttttctatt----ttagggtcttacatg----atatttg-ttttataacattttatattttATTAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189035725 379 + 189454096 gtgaaggcattaataaaaatatatacattaaatggaatatgaacgatcactta----accctttgtcatattactagat-tctccccaaagctaatattaattcatcaacagatgcc-aatacagctgttccagtgaactaaaa-tctctgtgaatgtgttgtatgccagcccatatttctacaactagttcacaaagaaagactatgaagccctcacaggggccatatttgctatatctgatctatgagaaccatatcctatc--aaaaaaaa-----------------aaaaagatatagtttaatgacttaatgcaaatacaaacaggtcccaattgattaccgttttctatt----ttagggtcttacatg----atatttg-ttttataacattttatattttATTAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178463262 380 + 178775436 GTGAAGGCattaataaaaacatacacattaaATGTAATATGAACGATCACTTA----ACCCTTTGTCATATTACTAGAT-TCTCCCCAAAGCTAATATTAATTCATCAACAGATGTCAAATACAGCTGTTCCAGAGAACTAAAAGCCTCTGTGAATGTGTTGTATGCCAGCTCATATTTCTACAACTAGTTCACAAAGAAAGACTATGAAGCCCTCACAGGGGCCATATTTGCTATATCTGATCTATGAGAACCATatcctatc---aaaaaaa-----------------aaatagatacagttTAATGACTTAATGCAAATACAAACAGGTCCCAATTGATTACCGttttctatt----ttagggtcttacatg----atatttg-ttttataacattttatattttattat
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135410220 381 + 135778131 gtgaaggcattaataaaaatatatacattaaatggaacatgaacaatcactta----acccttcgtcatactactagat-tctccccaaggctaatattaattcatcaacacatgccaaatacagctgttccagagaactaaaa-cctctgtgaatgtgttgtatgccagcccatatttctacaactagttcacaaagaaacactatgaagctttcacaggggccatatttgctatatctgatctatgagaaccacatcctatc-aaaaaaaaa-----------------aaatagatctagtttaatgacttaatgcaaatacaaacaggtcccagttgattaccgttttctatt----ttagggtcttacatg----atatttg-ttttataacattttatattttATTAT
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87641819 342 - 129401213 GTAAacacacacacacacacacacacac--------acacacacacTTATCTACTCCATCTTTTGTGGTGCTTCCAGA--------CAGTTGTAGTATAGTTTTACAAACACATTCCAAACACAGATTATCAGATGGGCCACAC-CCTTT------------------AGTCCTTATTCCTATGACTGGTTCTCAAGGAAAACATAGGCAAC-TTCTCAGGAACACTATGTGT---------TCTATAGTAA--ATACAATATC-------AAA-----------------ATGTAAATTTGCTTTAATGACTTAAAACAAATACATGTATATTCCATATAACATTCCTTACTTATTATTCCTAACATTCCTTATGAAACATACTTG-TTTCATAATATTTCATATTAGATGAT
i mm10.chr8                I 47 C 0
s canFam3.chr16             17948707 380 -  59632846 gtcaaagcattggtaaaaatgggtacattgagtggaacttgagcaatgacttc----accctttgtcctattactccacaactacctaaggctaatattgattcatcaacacatcctgaatacagctgttcaaagggactaaaa-tctatac-aatgtattatctgct--------ttttcacagctagttcacaaggaaagcctaggagactgt--cagatgccACGTTTGCCATATTTGATCTATGGGAGCTGTAGCACATC--AAAAGGGAGGCAGGAAAGCGGGTTGGAAGACATTTGGTTTAAAAAC--AATGCAAATTCAAACAAGTTCCAGTTGATCATTGCTTTCTATT----TTAGATGCTT---------ATATTTG-CtttataaaaatatattttttataaC
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190512885 693 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=2016416.000000
s hg38.chr4_KI270925v1_alt    273207  893 +    555799  
s panTro4.chr4             192967325  890 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198054197  892 + 198332218  
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183652173  850 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189036104  850 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178463642  852 + 178775436  
i papAnu2.chr5             C 0 I 319
s chlSab2.chr7             135410601  841 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190513578  896 - 190850796  
i calJac3.chr3             I 693 C 0
s mm10.chr8                 87642161  855 - 129401213  
i mm10.chr8                C 0 C 0
s canFam3.chr16             17949087 1149 -  59632846  
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=1564156.000000
s hg38.chr4_KI270925v1_alt    274100 503 +    555799  
s panTro4.chr4             192968215 500 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198055089 502 + 198332218  
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183653023 502 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189036954 502 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178464813 502 + 178775436  
i papAnu2.chr5             I 319 C 0
s chlSab2.chr7             135411442 503 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190514474 502 - 190850796  
i calJac3.chr3             C 0 I 771
s mm10.chr8                 87643016 521 - 129401213  
i mm10.chr8                C 0 C 0
s canFam3.chr16             17950236 519 -  59632846  
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=425666.000000
s hg38.chr4_KI270925v1_alt    274603 129 +    555799 CTCCACCCTATACCATCCATCATCCCACGTGGAGAGTTAATAATTTCAGTCATGTTGCCGTGACATTGTAATGAGAATCTTTCATATCCTGCAGCGCCTTTGTCAGCTGGACCTGTTCTAAGGACAAAT
s panTro4.chr4             192968715 125 + 193495092 CTCCACCCTATA----CCATCATCCCACTTGGAGAGTTAATAATTTCAGTCATGTTGCCGTGACATTGTAATGAGAATCTTTCATATCCTGCAGCGCCTTTGTCAACTGGACCTGTTCTAAGGACAAAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198055591 129 + 198332218 CTCCACGCTATACCATCCATCATCCCACCTGGAGAGTTAATAATTTCAGTCATGTTGCCGTGACATTGTAATGAGAATCTTTCATATCCCGCAGCGCCTTTGTCAACTGGACCTGTTCTCAGGACAAAT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183653525 129 + 184069350 CCCCACCCTACACCATCCGTCATCCCACGTGGAGAGTTAATAATTTCAGTCATGTTGCCGTGACAATGTAATGAGAATCTTTCATATCCGGCAGCGACTTTGTCAACTGGACCTGTTCTAAGGAAAAAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189037456 129 + 189454096 CCCCACCCTACACCATCCGTCATCCCACGTGGAGAGTTAATAATTTCAGTCTTGTTGCCGTGACATTGTAATGAGAATCTTTCATATCCGGCAGCGACTTTGTCAACTGGACCTGTTCTAAGGAAAAAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178465315 129 + 178775436 CCCCACCCTACACCATCCATCATCCCACTTGGAGAGTTAATAATTTCAGTCATGTTGCCGTGACATTGTAATGAGAATCTTTCACATCCGGCAGCGACTTTGTCAACTGGACCTGTTCTAAGGAAAAAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135411945 129 + 135778131 CCCCACCCTACACCATCCGTCATCCCACTTGGAGAGTTAATAATTTCAGTCATGTTGCCGTGACATTGTAATGAGAATCTTTCACATCCAGCAGCGACTTTGTCAACTGGACCTGTTGTAAGGAAAAAT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190515747 128 - 190850796 CCCCACCCTCTACCCTCCCTCACCCCACTTGGAGAGGTAAGAATTTCAGTAATGTTGCCGTGACGTCGCAGTGGGAACCTTTCAAACCCTGCAGCGCCTTTATCAA-TGGACCTGTTCTAAGGACAAAT
i calJac3.chr3             I 771 I 310
s mm10.chr8                 87643537 129 - 129401213 GGCCACCCTACCACATCCATCATCTCCCTTGGATAGTTAATAATTTCAATAATGTTGCCATGACACTATAATGAGAATGTTTCATATCCTGCAGCTCCTTTGTCAATTGGACCTGCTCTAAGGTCAAAT
i mm10.chr8                C 0 C 0
s canFam3.chr16             17950755 128 -  59632846 CACCACCCTGTAACATCCATCATC-CACTTGGATGGTTAATAATTTCAGTAATGTTGCCATGACATTGTAATGAGAATGTTTCATATCCTGCAGCTCCTTTGTCAATTGGACCTGCTCTAAGGTCAAAT
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=1439194.000000
s hg38.chr4_KI270925v1_alt    274732 593 +    555799  
s panTro4.chr4             192968840 570 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198055720 603 + 198332218  
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183653654 583 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189037585 581 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178465444 585 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135412074 587 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190516185 596 - 190850796  
i calJac3.chr3             I 310 I 1258
s mm10.chr8                 87643666 521 - 129401213  
i mm10.chr8                C 0 I 2
s canFam3.chr16             17950883 578 -  59632846  
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=385508.000000
s hg38.chr4_KI270925v1_alt    275325 193 +    555799 CTTTCTTT-TGCCCACATAAAGATAACAGGAAACCTGTACCAGAGAAGCACTTACTCCCACAGTCAAAAAGATAATAATTCCCACATTATTAGTAATTTTTGTTTACTGA----CCAAACAACTGTAATAGGTGTTAGTCTGTGTTTGTGGCTTTCAAATAGCTCATTTGTGGAAAAATC---TGAGCTTTTCGTAAACCT
s panTro4.chr4             192969410 193 + 193495092 CTTTCTTT-TGCCCACATAAAGATAACAGGAAACCTGTACCAGAGAAGCACTTACTCCCACAGTCAAAAAGATAATAATTCCCACATTATTAGTAATTTTTATTTACTGA----CCAAACAACTGTAATAGGTGTTAGTCTGTGTTTGTGGCTTTCAAATAGCTCATTTGTGGAAAAATC---TGAGCTTTTCGTAAACCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198056323 193 + 198332218 GTTTCTTT-TGCCCACATACAGATAACAGGAAACCTGTACCAGAGAAGCACTTACTCCCACAGTCAAAAAGATAATAATTTCCACATTATTAGTAATTTTTATTTACTGA----CCAAACAATTGTAATAGGTGTTAGTCTGTGTTTGTGGCTTTCAAATAGCTCATTTGTGGAAAAATC---TGACCTTTTCGTAAACCT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183654237 193 + 184069350 GTTTCTTT-TGCTCACATAAAGATAACAGGGAACCTGTACCAGAGAAGCACTTACTCCCACAGGCAAAAAGATAGTAATTTCCACATTATTAGTAATTTTTATTTACTGG----CCAAACAATTGTAATAGGTGTTAGTCTGTGTTTGTGACTTTCAGATAGCTCATTTATGGAAAAATC---TGAACTTTTCGTAAACCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189038166 193 + 189454096 GTTTCTTT-TGCTCACATAAAGATAACAGGGAACCTGTACCAGAGAAGCACTTACTCCCACAGGCAAAAAGATAGTAATTTCCACATTATTAGTAATTTTTATTTACTGG----CCAAACAATTGTAATAGGTGTTAGTCTGTGTTTGTGACTTTCAGATAGCTCATTTATGGAAAAATC---TGAACTTTTCGTAAACCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178466029 193 + 178775436 GTTTCTTT-TGCTCACATAAAGATAACAGGAAACCTGTACCAGAGAAGCACTTACTCCCACAGGCAAAAAGATAGTAATTTCCACattattagtaatttttatttactgg----CCAAACAATTGTAATAGGTATTAGTCTGTGTTTGTGACTTTCAGATAGCTCATTTATGGAAAAATC---TGAACTTTTCGTAAACCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135412661 192 + 135778131 GTTTCTTT-TGCTCACATAAAGATAACAGGAAACCTGTACCAGAGAAGCACTTACTCCCACAGGCAAAAAGATAGTAATTTCCACATTATTAGT-ATTTTTATTTACTGG----CCAAACAATTGTAATAGGTGTTAGTCTGTGTTTGTGACTTTCAGATAGCTCATTTATGGAAAAATC---TGAACTTTTCGTAAACCT
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87644189 177 - 129401213 gtgtgtctgtATTCCCACAAAGA-----------ATATACTAGAAAAGAG---ACTCttataataaaaaataaattgattt-cacattattata---ttttatttattGA------AGAAAATATTAGAAGATACTAATCTACATTTGTGGATTTAAATTAGCTTATATTTGTCATAATCTAATAATTATTTTATAACCCT
i mm10.chr8                I 2 I 35
s canFam3.chr16             17951461 168 -  59632846 ---GCTTT-TATTCACATAAGGATAACAGGAATCCTATATCAGAAATGA---TACTCTC-TGGTCaaaataaaatgtatttaaaaataa--aataaatCATGGGTACTAAAagtcaataatattgtaata------actttgta-tggtga-------------cagttatgataataac---tacacttatggtgagcat
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190516781 1258 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=97373.000000
s hg38.chr4_KI270925v1_alt    275518 61 +    555799 -TTATGAAGGTAGAAAAGACTTTAggctgggcgcagtggctcaca-ctgtcatcccagcactt
s panTro4.chr4             192969603 61 + 193495092 -TTATGAAGGTAGAAAAGACTTCAggctgggcgcagtggctcaca-ctgtcatcccagcactt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198056516 61 + 198332218 -TTATGAGGGTAGAAAAGACTTTAggctgggtacagtggctcaca-ctgtaatcccagcactt
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183654430 62 + 184069350 -TTATGAAGGTAGAAAAGACTTTAggccaggcatggtggctcatgcctgtaatcccagcattt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189038359 62 + 189454096 -TTATGAAGGTAGAAAAGACTTTAggccaggcatggtggctcatgcctgtaatcccagcattt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178466222 62 + 178775436 -TTATGAAGGTAGAAAAGACtttaggctaggcatggtggctcacgcctgtaatcccagcattt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135412853 62 + 135778131 -TTATGAAGGTAGAAAAGACTTTAggccgggcatggtagctcacgcctgtaatcccagcactt
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17951629 42 -  59632846 tttat-aatgtacataatagtcaaa---------------tcact-atgtcat----gcactt
i canFam3.chr16            C 0 I 173
e mm10.chr8                 87644366 35 - 129401213 I
e calJac3.chr3             190516781 1258 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=303521.000000
s hg38.chr4_KI270925v1_alt    275579 178 +    555799 tgggaggccgaggcgggtggatcatgaggcccaaagattgagaccaccctggccaacatgatgaaacctcgtctctactaaaaat-acaaaaattagcctggcgtgtttggcacatgcctatagtcccagctacttgggaggctgagacaggagaatcgcttgagctcgggtggcggag
s panTro4.chr4             192969664 178 + 193495092 tgggaggccgaagcgggtggatcatgaggcccaaagattgagaccaccctggccaacaggatgaaactccgtctctactaaaaat-acaaaaattagtctggcgtgtttggcacatgcctgtagtcccagctacttgggaagctgagacaggagaatcgcttgaactcgggtggcggag
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198056577 178 + 198332218 tgggagaccgaggcaggtggatcatgaggcccaaagattgagaccatcctggccaacatggtgaaactccgtctctactaaaaat-acaaaaattagccaggcgtgtttggcgcatgcctgtagtcccagctactcgggaggctgagacaggagaatcgcttgaacttgggaggtggag
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183654492 178 + 184069350 tgggaagccgaggcgggtgaatcatgagg-ccaaagatagagaccaccctggccaacatggtgaaaccccgtctctactaaaaataacaaaaattagcccggtatgtttggcgcatgcctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaactcgggaggcagag
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189038421 178 + 189454096 tgggaagccgaggcgggtgaatcatgagg-ccaaagatagagaccaccctggccaacatggtgaaaccccgtctctactaaaaataacaaaaattagccgggtatgtttggcgcatgcctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaactcgggaggcagag
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178466284 178 + 178775436 tgggaagccgaggcgggtgaatcatgagg-ccaaagatagagaccaccctggccaacatggtgaaaccccgtctctactaaaaataacaaaaattagccgggtatgtttggcgcatgcctgtaatcccagctacttgggaggctgaggcaggagaatcacttgaactcgggaggcagag
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135412915 178 + 135778131 tgggaagccgaggcgggtgaatcatgagacccaaagatcgaggccaccctggccaacatggtgaaaccccgtctctactaaaaataacaaaaattagccgggtgtg-gtggtgcatacctgtaattccagctactcgggaggctgaggcaggagaatcgcttgaactcgggaggcagag
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87644366  35 - 129401213 I
e canFam3.chr16             17951671 173 -  59632846 I
e calJac3.chr3             190516781 1258 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=101055.000000
s hg38.chr4_KI270925v1_alt    275757 61 +    555799 gttgcagtgagtcgagattgcatcactgcacgccagcctggtgacagagcgagactctgtc
s panTro4.chr4             192969842 61 + 193495092 gttgcagtgagtcgagattgcatcactgcacgccagcctggtgacagagcgagactctgtc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198056755 61 + 198332218 gttgcagtgagttgagaatgcgtcactgcacaccagcctggcgacagagcgaggctctgtc
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183654670 61 + 184069350 gttgcagtgagttgagatcgcgccactgcactccagcctggtgacagagcgagactctgcc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189038599 61 + 189454096 gttgcagtgagttgagatcgcgccactgcactccagcctggtgacagagcgagactctgcc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178466462 61 + 178775436 gttgcagtgagttgagatcacgccactgcactccagcctggtgacagagcgagactctgtc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135413093 61 + 135778131 gttgcagtgagttgagatcgcgccactgcactccagcctggtgacagagtgagactctgtc
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87644401 11 - 129401213 GTTGCAATGTG--------------------------------------------------
i mm10.chr8                I 35 C 0
e canFam3.chr16             17951671 173 -  59632846 I
e calJac3.chr3             190516781 1258 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=421605.000000
s hg38.chr4_KI270925v1_alt    275818 200 +    555799 tcaaag-aaaaaaagaaaaaaGGGAAGACTTTAGACTACACCATGAGGTCCTGGAAACCCACAGATGTTAGATGTTTGCCCTC--AGAAAGGCCCATAGGAAAGGCTTTCTATTGACCC-CACAGGAATACAAGTAACTCTCTCAAGGTTTTCAACTTTATGTTAAGATC-TTGAAGTCTCATGGGGCTGAAGAC-AAAATATTAC
s panTro4.chr4             192969903 201 + 193495092 tcaaagaaaaaaaagaaaaaaGGGAAGACTTTAGACTACACCATGAGGTCCTGGAAACCCACAGATGTTAGATGTTTGCCCTC--AGAAAGGCCCATAGGAAAGGCTTTCTATTGACCC-CACAGGAATACAAGTAACTCTCTCAAGGTTTTCAACTTTATGTTAAGATC-TTGAAGTCTCATGGGGCTGAAGAC-AAAATATTAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198056816 201 + 198332218 tcaaagaaaaaaagaaaaaaagagaaGACTTTAGACTACACCATGAGGTCCTGGAAACCCACAGATGTTAGATGTTTGCCCTC--AGAAAGGCCCATAGGAAAGGCTTTCTATTGACCC-CACAGGAATACAAGTAACTCTCTCAAGGTTTTCAACTTTATGTTAAGATC-TTGAAGTCTCATGGGGCTGAAGAC-AAAATATTAC
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183654731 193 + 184069350 tccaagaa--------aaaaagagaaGACTTTAGACTTCACCATGAGGTCCTGGAAACCCACAGATGCTAGATGTTTGCCCTC--AGAAAGGCCCATAGGAAAGGCTTTCTACTGACCC-CACAGGAATACAAGCAACTCTCTCAAGGTTTTCAACATTATGTTAAGATT-TTGAAGTCTCATGAGGCTGAAGAC-AAAATATTAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189038660 193 + 189454096 tccaagaa--------aaaaagagaaGACTTTAGACTTCACCATGAGGTCCTGGAAACCCACAGATGCTAGATGTTTGCCCTC--AGAAAGGCCCATAGGAAAGGCTTTCTACTGACCC-CACAGGAATACAAGCAACTCTCTCAAGGTTTTCAACATTATGTTAAGATT-TTGAAGTCTCATGAGGCTGAAGAC-AAAATATTAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178466523 193 + 178775436 tccaagaa--------aaaaagagaagactttaGACTCCACCATGAGGTCCTGGAAACCCACAGATGCTAGATGTTTGCCCTC--AGAAAGGCCCATAGGAAAGGCTTTCTATTGACCC-CACAGGAATACAAGCAACTCTCTCAAGGTTTTCAACATTATGTTAAGATT-TTGAAGTCTCATGAGGCTGAAGAC-AAAATATTAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135413154 201 + 135778131 tccaagaaaaaaagacaaaaagagaaGACTTTAGACTCCACCATGAGGTCCTGGAAACCCACAGATGTTATATGTTTGCCCTC--AGAAAGGCCCATAGGAAAGGCTTTCTACTGACCC-CACAGGAATACAAGCAACTCTCTCAAGGTTTTCAACTTTATGTTAAGATT-TTGAAGTCTCATGAGGCTGAAGAC-AAAATATGAC
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87644412 154 - 129401213 ----------------AATA-------TCCTTAGACTA---------------------CACAGGTTTCAGACATTGGTCCTC--AAAGAAGCCCTTGGGCAGGACTTCCCATAGACTC-TTCGGAAATATAAGTTACTATTCCAAGATTTTCAACATTTTCTCAGCACA-GT---GTTGGAAAAAAATGAAGAT-AAAATACTAT
i mm10.chr8                C 0 C 0
s canFam3.chr16             17951844 190 -  59632846 TTGAAGAA--------AAAAA---AAGACTCTGGACTGGACCATGAGGTCTTTGGGATACAGAGGGAATAGA---TTACCCTCAAAAAAAAATCCAAAGAAAGTACTTTCCACTGACCCATGCAGGAATATGGTCCAC--TCCCAAGATTTTCAACATTATATTCAGATTCTTAAAATCTCAAGGAACAAAAGACAAAAATATTAA
i canFam3.chr16            I 173 C 0
e calJac3.chr3             190516781 1258 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=166861.000000
s hg38.chr4_KI270925v1_alt    276018 71 +    555799 ATCAGAAAAAGATTATGTGGGGAAAAGTGTTTAACCATATTGCATTTTCCAATGAGAAA---GTAAACCAAAGA
s panTro4.chr4             192970104 71 + 193495092 ATCAGAAAAAGATTATGTGGGGAAAAGTGTTTAACCATATTGCATTTTCCAATGAGAAA---GTAAACCAAAGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198057017 70 + 198332218 ATCAGAAAAAGATTGTGTGGGGAAAGG-GTTTAACTGTATTGCATTTTCCATTGAGGAA---GCAAACCAAAGA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183654924 70 + 184069350 ATCAGGAAAAGATTATGTGGGGAAAAGGTTTTAACCATATTGCA-TTTCCATTGAGAAA---GTAAACCAAAGA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189038853 70 + 189454096 ATCAGGAAAAGATTATGTGGGGAAAAGGTTTTAACCATATTGCA-TTTCCATTGAGAAA---GTAAACCAAAGA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178466716 70 + 178775436 ATCAGGAAAAGATTATGTGGGGAAAAGGTTTTAACCATATTGCA-TTTCCACTGAGAAA---GTAAACCAAAGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135413355 70 + 135778131 ATCAGGAAAAGATTACGTGGGGAAAAGGTTTTAACCATATTGCA-TTTCCATTGAGAAA---GTAAACCAAAGA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190518039 60 - 190850796 ATCAAAAAGAGATTATGCGGGGAAAGG-ATTTAACCATATTGCATTTTTCACGGAG-------------AAAGA
i calJac3.chr3             I 1258 C 0
s mm10.chr8                 87644566 73 - 129401213 ATCAGAGAAAGATGACATGGGGAAAAT-ATTTTATTGTTTTGCACTGTTCACAGGGAAAGATGTAAAACATGGA
i mm10.chr8                C 0 C 0
s canFam3.chr16             17952034 67 -  59632846 GTTAGAAA---ATGTTGTGGGAAAACAGTTTTAACCATCTTTCATTTTTCAGTAGGATA----TAAGCCAAAAA
i canFam3.chr16            C 0 I 1378
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=225307.000000
s hg38.chr4_KI270925v1_alt    276089 76 +    555799 AAAAGTAGACACACCAACAGCATTTTCTTGCTGAGCTTAGTTTTGTCCATATCAT--AATAGCTTTTGTCTTTTCAGG
s panTro4.chr4             192970175 76 + 193495092 AAAAGTAGACACACCAACAGCATTTTCTTGCTGAGCTTAGTTTTGTCCATATCAT--AATAGCTTTTGTCTTTTCAGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198057087 76 + 198332218 AAAATTGGAGGCACCAACAGCATTTTCTTGCTGAGCTTAGTTTTGTCCATATCAT--AGTAGCTTTTGTCTTTCCAGG
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183654994 76 + 184069350 AAAAGTAGAGGCACCAACAGTATTTTCTTGCTGAGCTTAGTTTTGTCCACATCAT--AATAACTTTTGTCTTTCTAGG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189038923 76 + 189454096 AAAAGTAGAGGCACCAACAGTATTTTCTTGCTGAGCTTAGTTTTGTCCACATCAT--AATAACTTTTGTCTTTCTAGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178466786 76 + 178775436 AAAAGTAGAGGCACCAACAGTATTTTCTTGCTGAGCTTAGTTTTGTCCACATCGT--AATAACTCTTGTCTTTCTAGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135413425 76 + 135778131 AAAAGTAGAGGCACCAACAGCATTTTCTTGCTGAGCTTAGTTTTGTCCACATCGT--AATAACTTTTGTCTTTCTAGG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190518099 76 - 190850796 AAAACTAGAGGTACTAACAGCATTTTCTTGCTGAGCTTAGTTTTGCCCACATCGT--AATAGCTTTTGTCTTTCCAGG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87644639 71 - 129401213 A-------AGCCATTGACAGCATGTTCTTATCAAGCTCATTATTCTTCATATTATAAAATACCATCCATCTTCCCAGG
i mm10.chr8                C 0 I 814
s canFam3.chr16             17953479 76 -  59632846 AAAGGTAGAGTCATCCACAGCATTTTCTTGCTGAGCTTAGTTTTCTTCAAATCAC--GGATAACTCTGTCTTTTCGGG
i canFam3.chr16            I 1378 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=303520.000000
s hg38.chr4_KI270925v1_alt    276165 118 +    555799 TTACAGTGGAGATTTAGGGAGA-TTTTATTTGCTCTAAATAAAGGTTTTGT-GTCTCTATGAAGAGATGGGATTCAGTTGGGTCTCTACTCAGACCCCTCATCGCGCATATCACAGTGGC
s panTro4.chr4             192970251 118 + 193495092 TTACAGTGGAGATTTAGGGAGA-TTTTATTTGCTCTAAATAAAGGTTTTGT-GTCTCTATGAAGAGATGGGATTCAGTTGGGTCTCTACTCAGACGCCTCATCGCGCATATCACAGTGGC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198057163 119 + 198332218 TTACGGTGGAGATTTAGGGAGATTTTTTTTTGCTCTAAGTAAAGGTTTTGT-GTCTCTATGAAGAGATGGGATTCAGTTGGGTCTCTACTCAGACCCTTCGTCGCGCATATCACAGTGGC
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183655070 118 + 184069350 TTAGGATGGAGATTTAGGGAGA-TTTTGTTTGCTCTAAATAAAGGTCTTGT-GCCTCTATGAAGAGATGGGATTCAGTTGGGTCTCTACTCAGACCCCTCATCGCGCGTATCACAGTGGC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189038999 118 + 189454096 TTAGGATGGAGATTTAGGGAGA-TTTTGTTTGCTCTAAATAAAGGTCTTGT-GCCTCTATGAAGAGATGGGATTCAGTCGGGTCTCTACTCAGACCCCTCATCGCGCGTATCACAGTGGC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178466862 118 + 178775436 TTAGGATGGAGATTTAGAGAGA-TTTTGTTTGCTCTAAATAAAGGTCTTGT-GCCTCTATGAAGAGATGGGATTCAGTTGGGTCTCTACTCAGACCCCTCATCGCACGTATCACAGTGGC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135413501 114 + 135778131 TTAGGATGGAGATTT----AGA-TTTTGTTTGCTCTAAATAAAGGTCTTGC-GCCTCTATGAAGAGATGGGATTCAGTTGGGTCTCTACTCAGACCCCTCATCGCGCGTATCACAGTGGC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190518175 117 - 190850796 TGAGGA-GTAGGTTTAGGGATA-TTTTGTTGGCTCGAAGTAAAGGTTTTGT-GTCTCTGTGAAGAGATGGGATTTAGTGGGGTCTCTATGCAGACCCCTCATCACACGTATCACAGTGAC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17953555 118 -  59632846 TTAGGATAGAAGTTTAAAAAGA-TTTTGTTTGTCCTAA-TAAAGATTTTATAATCCTCAGGAAGAAATGAGACCAAGTTGGGTCTACACTCAGATTCTTTATAGCACGTATCACAGTGGA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87644710 814 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=1005528.000000
s hg38.chr4_KI270925v1_alt    276283 495 +    555799  
s panTro4.chr4             192970369 508 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198057282 525 + 198332218  
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183655188 507 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189039117 507 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178466980 509 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135413615 501 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190518292 478 - 190850796  
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87644710 814 - 129401213 I
e canFam3.chr16             17953673   0 -  59632846 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=582050.000000
s hg38.chr4_KI270925v1_alt    276778 348 +    555799 cctctgtctcctgagttcaagggattctcctgcctcagcctcccatgc--ctgggattacaggcacccaccaccacgtccggctaatttttgtatttttagtagagacggggtttcaccatgttggacaggctggtctcgaactcctgtcgtcaggtgatccatctgcctcagcctcccaaagtgctgagattacaggcatgagccactgtgccttgccTCTTTTCTAGTTtttatcacctgcttcaggggagagggatgggggaaggtcagagggtccttcctgcttctgtggttttctcaaatgccAAGGTGTCGTACGTTGTGGTGTCCAGCCCCGAATTTCATCAG
s panTro4.chr4             192970877 348 + 193495092 cctctgtctcctgagttcaagggaatctcctgcctcagcctcccatgc--ctgggattacaggcacccaccaccacgtccggctaatttttgtatttttaatagagacggggtttcaccacgttggacaggctggtctcgaactcctgtcatcaggtgatctgtctgcctcagcctcccaaagtgctgagattacaggcatgagccactgtgccctgccTCTTttctagtttttatcacctgcttcaggggagaggaatgggagaaggtcagagggtccttcctgcttctgtggttttctcaaatgccaaggtgtcgtactttgtggtgtcAAGCTCCAAATTTCATCGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198057807 348 + 198332218 cctccatctcctgagttcaagggattctcctgcctcagcctcccatgc--ctgggattacaggcacccgccaccacgtccggataatttttgtatttttagtagagacggggtttcaccacgttggacaggctgatctcgaactcctgtcatcaggtgatccatctgcctcagcctcccaaagtgctgagattacaggcatgagccactgtgccctgcctcttttctagtttttatcacctacttccggggagaggggtgggagaaggtcagagggtccttcctgcttctgtggttttctcaaatgtcaagatgccatatgttttggtgtCAAGCCCCGAATTTCATCAG
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183655695 347 + 184069350 cctgcgtctcctgagctcaagcgattctcctgcctcagcctcctgagtagctgggactacaggcacccgcccccacgcctgcctaa-ttttgtatttttagtagagatggggtttcaccatattggccgggctggtctcaaattcctatcctcaggtgatccgcctgccttggcctcccaaagtgctgggattacaggcgtgagccactgtgcccggccTCTTTTCTAGTTTTTATCACCTGCTTCAGGGGCGAGGGGTGGGAGAAGGTCAAAAGGTCCTTCCTGCTTCTGTGGTTTTCTCAAATGCCAAGA-GCCATACTTGGTGGTGTCAAGCCCCG-ATTTCATCAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189039624 347 + 189454096 cctgcgtctcctgagctcaagcgattctcctgcctcagcctcctgagtagctgggactacaggcacccgcccccacgcctgcctaa-ttttgtatttttagtagagatggggtttcaccatgttggccgggctggtctcaaattcctatcctcaggtgatccgcctgccttggcctcccaaagtgctgggattacaggcgtgagccactgtgcccggcctcttttctagtttttatcacctgcttcaggggcgaggggtgggagaaggtcaaaAGGTCCTTCCTGCTTCTGTGGTTTTCTCAAATGCCAAGA-GCCATACTTGGTGGTGTCAAGCCCCG-ATTTCATCAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178467489 347 + 178775436 cctgcgtctcctgagctcaagcgattctcctgcctcagcctcccaagtagctgggactacaggcacccgcccccacgcctgcctaa-ttttgtatttttagtagagatggggtttcaccatgttggccgggctggtctcaaattcctgtcctcaggtgatccgcctgccttggcctcccaaagtgctgggattacaggcgtgagccactgcacctggcctcttttctagtttttatcacctGCTTCAGGGGCGAGGGGTGGGAGAAGGTCAAAAGGTCCTTCCTGCTTCtgtggttttctcaaatgccaaga-gCCATACTTGGTGGTGTCAAGCCCCG-ATTTCATCAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135414116 347 + 135778131 cctgcgtctcctgagctcaagtgattctcctgcctcagactcccaagtagctgggattacaggcacccgcccccatgcctgcctaa-ttttgtatttttagtagagatagggtttcaccatgttggccgggctggtctcaaactcctgtcctcaggtgatccacacaccttggcctcccaaagtgctgggattacaggcgtgagccactgcgcccggccTCTCTTCTAGTTTTTATCACCTGCTTCAGGGGTGAGGGGTGGGAGAAGGTCAAAAGGTCCTTCCTGCTTCTGTGGTTTTCTCAAATGCCAAGA-GCCATACTTGGTGGTGTCAAGCCCCG-ATTTCATCAG
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87644710 814 - 129401213 I
e canFam3.chr16             17953673   0 -  59632846 C
e calJac3.chr3             190518770   0 - 190850796 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=619535.000000
s hg38.chr4_KI270925v1_alt    277126 308 +    555799 CTGCAACTGCTTTCACCTCTCCTGC------------------TCCCATGAGACTCCATGTTCCCCAAAGGCCATTTCTTCTCATCTGTGACTCTCCA-TCCCAAACACAATGCTTAGCAGTGTGATCAATATGTGCTTCGTGCATATTAGTTACCTTGAAAATTTTCTCAAGGCCAGACTCCAAAAAAAATTATAAATACATGGAAACCAGTGGAATCAGGTAAAGGCAAAACTATTCAAAGA-------------AACTCGACTCACCATTGAGAGAAAAAGAAAGTCAACCCCTCTCTGTGCTAAGTAAAAAT-TTTACTTTATTTCAGCACTTTTCA
s panTro4.chr4             192971225 308 + 193495092 CTGCAACTGCTTTCACCTCTCCTGC------------------TCCCATGAGACTCCATGTTCCCCAAAGGCCATTTCTTCTCATCTGTGACTCTCCA-TCCCAAACACAATGCTTGGCAGTGTGATCAATATGTGCTTCGTGCATATTAGTTACCTTGAAAATTTTCTCAAGGCCAGACTCCAAAAAAAATTATAAATACATGGAAACCAGTGGAATCAGGTAAAGGCAAAACTATTCAAAGA-------------AACTCGACTCACCATTGAGAGAAAAAGAAAGTCAACCCCTCTCTGTGCTAAGTAAAAAT-TTTACTTTATTTCAGCACTTTTCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198058155 308 + 198332218 CTGCAACTATTTTCACCTCTCCTGC------------------TCCCATGAGACTCCATGTTCCCCAAAGGCCATTTCTTCTCATCTGTGACTCTCCA-TCCCACACACAATGCTTGGCACTGTGATTAATATGTGCTTAGTGCATATTAGTTACCTTGAAAATTTTCTCAAGGCCAGACTCCAAAAAAGATCATAAATACATGGAAACCAGTGGAATCAGGTAAAGGCAAAACTATTCAAAGA-------------AACTCGACTCACCATTGAGAGAAAAAGAAAGTCAACCCCTCTCTGTGCTAAGTAAAAAT-TTTACTTTATTTCAGCACTTTTCA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183656042 326 + 184069350 CTGCAACTGCTTTCAGCTCTCCTGCTCCCATGGGACTCCATGTTCCCACGGGACTCCATGTTCCCCAAAGGCCATTTCTTCTCATCTGTGACTCTCCA-TCCCGAACACAATGCTTGGCAGTGTGATCAGTATGTGCTTAGTGCATATTAGTGACCTTGAAAATGTTCTCAAGGCCAGACTCCAAAAACAATTATAAATACATGGAAACCAGTGGAATCACGTAAAGGCAAAACTATTCAAAGA-------------AAGTCAACTCACCATTGAGAGAAAAAGAAAGTCAACCCCTCTCTGTGCTAAGTAAAATT-TTTACTTTATTTCAGCACTTTTCA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189039971 326 + 189454096 CTGCAACTGCTTTCAGCTCTCCTGCTCCCACGGGACTCCATGTTCCCACGGGACTCCATGTTCCCCAAAGGCCATTTCTTCTCATCTGTGACTCTCCA-TCCCGAACACAATGCTTGGCAGTGTGATCAGTATGTGCTTAGTGCATATTAGTGACCTTGAAAATGTTCTCAAGGCCAGACTCCAAAAACAATTATAAATACATGGAAACCAGTGGAATCACGTAAAGGCAAAACTATTCAAAGA-------------AAGTCAACTCACCATTGAGAGAAAAAGAAAGTCAACCCCTCTCTGTGCTAAGTAAAATT-TTTACTTTATTTCAGCACTTTTCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178467836 326 + 178775436 CTGCAACTGCTTTCAGCTCTCCTGCTCCCACGGGACTCCATGTTCCCATGGGACTCCATGTTCCCCAAAGGCCATTTCTTCTCATCTATGACTCTCCA-TCCCGAACACAATGCTTGGCAGCGTGATCAGTATGTGCTTAGTGCATATTAGTGACCTTGAAAATGTTCTCAAGGCCAGACtccaaaaacaattataaatacatgGAAACCAGTGGAATCACGTAAAGGAAAAACTATTCAAAGA-------------AAGTCAACTCACcattgagagaaaaagaaagtcaacCCCTCTCTGTGCTAagtaaaatt-tttactttatttcagcACTTTTCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135414463 308 + 135778131 CTGCAACTGCTTTCACCTCTCCTGC------------------TCCCATGGGACTCCATGTTCCCCAAAGGCCATTTCTTCTCATCTGTGACTCTCCA-TCCCGAACACAATGCTTGGCAGTGTGATCAGTATGTGCTTAGTGCATATTAGTGACCTTGAAAATGTTCTCAAGGCCAGACTCCAAAAACAATTATAAATACATGGAAACCAGTGGAATCACGTAAAGGCAAAACTATTCAAAGA-------------AAGTCAACTCACCATTGAGAGAAAAAGAAAGTCAACCCCTCTCTGTGCTAAGTAAAATT-TTTACTTTATTTCAGCACTTTTCA
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17953673 278 -  59632846 CTGCAAATGCTCTCACTTCTCACCC------------------ACCTGACAGAC-CCATATTCAATAAAGACCAT---TTCTCAACTATGACCCCCCACTTTCTAACATTGTGCTTGACA---TGAT--------------------------------------TTCCCAAGGTCAGATTCTGAAAGAAATTGCAAATATAGGGAAACTGCTAGAACTGGTTAAAGGAAAAACAATTAAAAAGAAAAGAAAAAAATAACTTAGATCACTACAGATAGAAAAAAAAAATCAATGCTATTAAATGCCAACTAGAATTGTTCACTTTATTTCAGCAATCATCA
i canFam3.chr16            C 0 I 24
e mm10.chr8                 87644710 814 - 129401213 I
e calJac3.chr3             190518770   0 - 190850796 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=272185.000000
s hg38.chr4_KI270925v1_alt    277434 160 +    555799 AAACTAC--GAGTCACATAAAAAAATCACTACggctgggtgcagtggctgactcctgtaatcccagcacgatgggaggccaaggca-gtggatcacctgaggtcaagcgtctgagaccagcctgaccaacatggtgaaaccctatctctactaaaaataca--aa
s panTro4.chr4             192971533 160 + 193495092 AAACTAC--GAGTCACATAAAAAAATCACTAGggctgggtgcagtggctgacgcctgtaatcccagcacaatgggaggccaaggca-gtggatcacctgaggtcaagagtttgagaccagcctgaccaacatggtgaaaccccatctctactaaaaataca--aa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198058463 162 + 198332218 AAACTACATGAGTCACATAAAAAAATCACTAGggctgggtgcagtggctgacgcctgtaatcccagcacgatgggaggccaaggca-gtggatcacctgaggtcaagagtttgagaccagcctgaccaacacagtgaaaccccgtctctactgaaaataca--aa
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183656368 163 + 184069350 AAACTACATGAGTCACATAAAAGAATCACTAGggctgggtgcagtggctcacacctgtaatcccagcactgtgggaggccaaggtgggtggatcacctgaggtcaggagtttgagaccagcctgaccaacatggtaaaaccccttctccactaaaaatacaaa--
i rheMac3.chr5             C 0 I 156
s macFas5.chr5             189040297 161 + 189454096 AAACTACATGAGTCACATAAAAGAATCACTAGggctgggtgcagtggctcacacctgtaatcccagcactgtgggaggccaaggtgggtggatcacctgaggtcaggagtttgagaccagcctgaccaacatggtaaaaccccttctccactaaaaataca----
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178468162 161 + 178775436 AAACTACATGAGTCACATAAAAGAATCactagggctgggtgcagtggctcacacctgtaatccaagcactgtgggaggccaaggtgggtggatcacctgaggtcaggagtttgagaccagcctgaccaacatggtaaaaccccttctccactaaaaataca----
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135414771 161 + 135778131 AAACTACATGAGTCACATAAAAGAATCACTAGggctgggtgcagtggctcacacctgtaatcccagcactgtgggaggccaaggtgtgtggatcacctgaggtcaagagtttgagaccagcctgaccaacatggtaaaaccccttctccactaaaaataca----
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87644710 814 - 129401213 I
e canFam3.chr16             17953951  24 -  59632846 I
e calJac3.chr3             190518770   0 - 190850796 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=230614.000000
s hg38.chr4_KI270925v1_alt    277594 289 +    555799 aattagccaggtatcgtggtgggcacctgtaatctcagctagttgggaggctgaggcaggagaatcacttgaacgcgggcggcagaggttgcagtgagctgagatcgcaccgctgcactccagcctgg-ggctgagtgagactccatctgaaaaaaaaagaaaagagaaagaaagaaagaaaaaaagaaagaaagagaaagaaaaagagaga---gagaaagaaagacaaagaaag--aaagagagagaaagaaagaaag-acgaaagaaagaaaagaaagaaagaaaaag----------------aaaaa--
s panTro4.chr4             192971693 286 + 193495092 aattagccaggtatggtggtgggcgcctgtaatcccagctagttgggaggctgaggcaggagaatcacttgaacgcgggaggcagaggttgcagtgagctgagatcacaccactgcactccagcctggtgactgagtgagactccatctggaaaaaaaagaaaagagaaagaaagaaagaaaaaaggaaagaaagagaaagaaaa--agaga---gagaaagaaagacaaagaaag--agcgagaaagaaagaaagaaag-----aagaaagaaaagaaagaaagaaaaag--------------aaaaaaa--
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198058625 232 + 198332218 aattagccaggcgtggtggtgggcacctgtaatcccagctagttgggcggctgaggctggagaatcacttgaacctgggaggcagaggttgcagtgagctgagatcgcaccactgcactccagcctggcgacagagtgagactccatctgaaa--------------------------aaaaaaagaaacaaagagaaagaaag--agaga---aagaaagaaaga-----------agaaagagagaaagaaagaaag-----aagaaagaa---------------------------------agaaa--
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189040458 302 + 189454096 aattagctggacgtggtggcacgtgtctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacctgggaggcagaggctgcagtaagccgagattgcaccactgcactgcagcctggcgacagagtgagactccatctgaaaaa------ataaaaaaaggaagaagaagaaagaaaaagaaagagaaaaagaa--agagagagaagaaagaaagaaaaagaaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaa----ggaaggaagaaaagaaaga
i macFas5.chr5             C 0 I 3
s papAnu2.chr5             178468323 304 + 178775436 aattagctggacgtggtggcacgtgtctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaacctgggaggcagaggctgcagtgagccgagattgcaccactgcactgcagcctggcgacagagtgagactccatctgaaaaa--------aaaaaaaggaagaagaagaaagaaaaagaaagagaaaaagaa--agagagagaagaaagaaagaaaaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggagggaaggaagaaaagaaaga
i papAnu2.chr5             C 0 I 3
s chlSab2.chr7             135414932 255 + 135778131 aattagctggacgtggtggcacgtgtctgtaatcccagttactcgggaggctgaggcaggagaattgcttgaacctgggaggcagaggctgcagtgagccaagactgcaccactgcactgcagcctggcgacagagtgagNNNNNNNNNNaaaga--------------------aagaaagaaaagaaagaaagaaagaaagaa--aga-----aagaaagaaag--aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaagaaagaaa------------------------------
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87644710 814 - 129401213 I
e canFam3.chr16             17953951  24 -  59632846 I
e calJac3.chr3             190518770   0 - 190850796 C
e rheMac3.chr5             183656531 156 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=13453.000000
s hg38.chr4_KI270925v1_alt    277883 10 +    555799 aaagagaaag
s panTro4.chr4             192971979 10 + 193495092 aaaaagaaag
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198058857 10 + 198332218 gaaaagaaag
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183656687 10 + 184069350 aaagaaaAAG
i rheMac3.chr5             I 156 C 0
s macFas5.chr5             189040763 10 + 189454096 aaagaaaAAG
i macFas5.chr5             I 3 C 0
s papAnu2.chr5             178468630 10 + 178775436 aaagaaaaag
i papAnu2.chr5             I 3 C 0
s chlSab2.chr7             135415187  6 + 135778131 ----agaaag
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87644710 814 - 129401213 I
e canFam3.chr16             17953951 24 -  59632846 I
e calJac3.chr3             190518770  0 - 190850796 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=2548.000000
s hg38.chr4_KI270925v1_alt    277893 1 +    555799 a
s panTro4.chr4             192971989 1 + 193495092 a
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198058867 1 + 198332218 a
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183656697 1 + 184069350 A
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189040773 1 + 189454096 A
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178468640 1 + 178775436 a
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135415193 1 + 135778131 a
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17953975 1 -  59632846 A
i canFam3.chr16            I 24 C 0
e mm10.chr8                 87644710 814 - 129401213 I
e calJac3.chr3             190518770 0 - 190850796 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=727472.000000
s hg38.chr4_KI270925v1_alt    277894 331 +    555799 TCGCCAGAAGCCTTGAAAAGTCACCTCTCTTAATAAAGGCAACTGTTTTCCTGTGGAAGGCATTACGTCATGT--ATGGACATCTTTCCTTTTTATGAAGGACATATTAGTGTTCTTATTTATTGGCCTGATCCTAACACCTCTAAATTTTAAATGAAATTTTTTCCTATATTTAGCCTGGTATGT--TGGTCCTTTTTGGATGGGTTTATAGTGGATATTCCAGTTTTCTTAGTTGTTACATAAACTCTTGATTTGTGTTCCAGAAATTTAGTCCCACCTTCC-TT--TTTTTCCTGTGAAAATACTTTTCAGGATGATGGCAGCTTCATTGTTCCA
s panTro4.chr4             192971990 331 + 193495092 TCGCCAGAAGCCTTGAAAAGTCACCTCTCTTAATAAAGGCAACTGTTTTCCTGTGGAAGACATTACGTCAAGT--ATGGACATCTTTCCTTTTTATGAAGGACATATTAGTGTTCTTATTTATTGGCCTGATCCTAACACCTCTAAATTTTAAATGAAATTTTTCCCTATATTTAGCCTGGTATGT--TGGTCCTTTTTGGATGGGTTTATAGTGGATATTCCAGTTTTCTTAGTTGTTACATAGACTCTTGATTTGTGTTCCAGAAATTTAGTCCCACCTTCC-TT--TTTTTCCTGTGAAAATACTTTTCAGGATGATGGCAGCTTCATTGTTCCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198058868 331 + 198332218 TCGCCAGAAGCCTTGGAAAGTCACCTCTCTTAATAAAGGCAACTGTTTTCCTGTGGAAGACATTACATTATGT--ATGGACATCTTTCCTTTTTATGAAGGACATATTAGTGTTCTTATTTATTGACCTGATCCTAACACCTCtaaattttaaataaaattttttCCTATATTTAACCTGATATGT--TGGTCCTTTTTGGGTGGGTTTATAGTGGATATTCCAGTTTTCTTTGTTGTTACATAAACTCTTGATTTGTGTTCCAGAAATTTAGTCCCACCTTCC-TT--TTTTTCCTGTGAAAATACTTTTCAGGATGATGGCCACTTCACTGTTCCA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183656698 331 + 184069350 TCGCCAGAAGCCTTGAAAAGTCACCTCTATTAATAAAGGCAACTGTTTTCCTGTGGAA-ACATTACATCATAC--ATGGACGTCTTTCCTTTTTATGAAAGACACATTAGTGTTATTACTTATTGACCTGATCCTAACACCTCTAAATTTTAAGTGAAATGTTTTCCTGTATTTAACCTGATATGT--TGTTCCTTTTTGGATGGGTTTATAGCAGATA-TCCAGTTTTCTTAGTTGTTACATAAATTCCTGATTTGTGTTCCAGAAATTTAGTTCCACCTTCC-TTTATTTTTTCTGTGAAAATACTTTTCAGGATGGTGGCAGCTTCATTGTTCCA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189040774 331 + 189454096 TCGCCAGAAGCCTTGAAAAGTCACCTCTATTAATAAAGGCAACTGTTTTCCTGTGGAA-ACATTACATCATAC--ATGGACGTCTTTCCTTTTTATGAAAGACACATTAGTGTTATTACTTATTGACCTGATCCTAACACCTCTAAATTTTAAGTGAAATGTTTTCCTGTATTTAACCTGATATGT--TGTTCCTTTTTGGATGGGTTTATAGCAGATA-TCCAGTTTTCTTAGTTGTTACATAAATTCCTGATTTGTGTTCCAGAAATTTAGTTCCACCTTCC-TTTATTTTTTCTGTGAAAATACTTTTCAGGATGGTGGCAGCTTCATTGTTCCA
i macFas5.chr5             C 0 T 40
s papAnu2.chr5             178468641 331 + 178775436 tcgccagaagccttgaaaagTAACCTCTATTAATAAAGGCAACTGTTTTCCTGTGGAA-ACATTACATCATAC--ATGGACgtctttcctttttatgaaaGACACATTAGTGTTATTACTTATTGACCTGATCCTAACACCTCtaaattttaagtgaaatgttTTCCTGTATTTAACCTGATATGT--TGTTCCTTTTTGGATGGGTTTATAGCgaata-tccagttttcttagTTGTTACATAAATTCCTGATTTGTGTTCCAGAAATTTAGTTCcaccttcc-tttattttttctgtgaaaatactTTTCAGGATGGTGGCAGCTTCATTGTTCCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135415194 335 + 135778131 TCGCCAGAAGCCTTGAAAAGTCACCTCTATTAATAAAGGCAGCTATTTTCCTGTGGAACACATCACATCATAC--ATGGACAGCTTTCCTTTTTATGAAAGACATATTAGCGTTCTTACTTATTGACCTGATCCTAACACCTCTAAATTTTAAGTTAAATTTTTTCCTATATTTAACCTGATATGTTGTGTTCCTTTTTGGATGGGTTTATAGCGGATA-TCCAGTTTTCTTAGTTGTTACATAAATTCCTGATTTGTGTTCCAGAAATTTAGTTCCACCTTCCTTTTTTTTTTTCTGTGAAAATACTTTTCAGGATGATGGCAGCTTCATTGTTCCA
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87645524 294 - 129401213 TCCCCAGAAACCTTGAGATGTCCCCTCTCTGAACATAGGTAAATGTTTTCTTATGAAACACAATAGGTTATATAAATGACAAATGTCCTTTTTTGTGAAAGATATGTTAG---TTATGGCTATTAATGTGTTTTCAACTGCTC--------------AATTTTTTTCTGTATTTAACCTGCTACTT--TAGTCC-TTAAAGAAAAAAACATCTTAGATA-TC--ATTTTCTTAGTTTGTATAGAATTTCCTTATTTGAATTCCAAAAGCATAGCCACGTGCTCG-ATTGCTTTTAC--TTAAAATAAGCTTCAAGTTAAT------------------
i mm10.chr8                I 814 C 0
s canFam3.chr16             17953976 329 -  59632846 TTCCCATAAGCCTTGGGAAGTCACCTCTCTTAACAGAGGCAAGTATTATCCTGTGAAACATATTATATCATAT--TAGAACATCTGTCA-TCTTATGAAAGATGTATTAGTGTTCCTGTTTATTGATCTGACCTCAATACCTCAAGATTGTAAATAAAATTTTTCCCCACATTGAACCTGATATTC--GGATTCTTTTTGGATGAGTTTGTACTAGATC-CTCTGTTCTCTTAGTTTTTATATAAAATCTTCCTTTGTGTAAGAAAAACTTAGTCCCACCTTTA-ATT-TCTTTTCTTTTAAAATA-TTTTCAAGATAACACCTGCTTCACTGAACCA
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190518770   0 - 190850796 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=-4169.000000
s hg38.chr4_KI270925v1_alt    278225 39 +    555799 GGAAAATACTTTTCAGGATGATGGCAGC-TTCATTGTTCC
s panTro4.chr4             192972321 39 + 193495092 GGAAAATACTTTTCAGGATGATGGCAGC-TTCATTGTTCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198059199  3 + 198332218 GGA-------------------------------------
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189041065 39 + 189454096 TGAAAATACTTTTCAGGATGGTGGCAGC-TTCATTGTTCC
i macFas5.chr5             T 40 I 1
s mm10.chr8                 87645818 19 - 129401213 ---------------------TAATAACTTTTATTGCACA
i mm10.chr8                C 0 I 1
s canFam3.chr16             17954305  4 -  59632846 --------------AGAA----------------------
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190518770  0 - 190850796 C
e chlSab2.chr7             135415529  0 + 135778131 C
e papAnu2.chr5             178468972  0 + 178775436 C
e rheMac3.chr5             183657029  0 + 184069350 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=525903.000000
s hg38.chr4_KI270925v1_alt    278264 213 +    555799 AGGGGAAATGTAAATTTGAGTTCTGAAATTGTTTTTGAACACC-GGGTTTCTTCTTTTTGTATTTT--AACTGAGAAGTAGACAAAGATGTTTCACTTAAACACTTAGACATGATTTATTCTATAAGTTAACTCTTTACCATGGAATAAAGTCACCTTTAGAAAATGACAGAAAAAA--ATAGATGGGAAG-GTGTTTATTCTCTGATATTTTT-CCAGA
s panTro4.chr4             192972360 213 + 193495092 AGGGGAAATGTAAATTTGAGTTCTGAAATTGTTTTTGAACACC-GGGTTTCTTCTTTTTGTATTTT--AACTGAGAAGTAAACAAAGATGTTTCACTTAAACACTTAGACATGATTTATTCTACAAGTTAACTCTTTGCCATGGAATAAAGTCACCTTTAGAAAATGACAGAAAAAA--ATAGATGGGAAG-GTGTTTATTCTCTGATATTTTT-CCAGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198059202 209 + 198332218 ----GAAATGTAAATTTGAGTTCTGAAATTGTTTTTGAACACCTGGGTTTCTTCTTTTTGTGTTTT--AACTGAGAAGTAAACAAAAATGTTTCACTTAAACACTTAGACATGATGTATTCTATAAGTTAACTGTTTACCATGGAATAAAGTCACCTTTAG-AAATGATAGGAAAAA--ATAGATGGGAAG-GTGTTTATTCTCTGATATTATT-CCAGA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183657029 214 + 184069350 AGGGGAAATGTAAATTTGAGTTCTGAAATTGTTTTTGAACACCAGGGTTTCTTCTTTCTGTATTTT--AACTGAGAAGTAAACAAAAAATTTCCACTTAAACACTTAGACATGATTTATTCTATAAGTTAACTCTTTACCATGGAATAAAGTCACCTTTAGAAAATGATGGAAAAAAAGATAGATGGGAAG-GTGTTTATTCTC--ATATTTTT-CCAGA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189041105 214 + 189454096 AGGGGAAATGTAAATTTGAGTTCTGAAATTGTTTTTGAACACCAGGGTTTCTTCTTTCTGTATTTT--AACTGAGAAGTAAACAAAAAATTTCCACTTAAACACTTAGACATGATTTATTCTATAAGTTAACTCTTTACCATGGAATAAAGTCACCTTTAGAAAATGACGGAAAAAAAGATAGATGGAAAG-GTGTTTATTCTC--ATATTTTT-CCAGA
i macFas5.chr5             I 1 C 0
s papAnu2.chr5             178468972 214 + 178775436 AGGGGaaatgtaaatttgagttctGAAATTGTTTTTGAACACCAGGgtttcttctttctgtatttt--aactgagaagtaaacaaaaaattaccACTTAAACACTTAGACATGATTTATTCTGTAAGTTAACTCTTTACCATGGAATAAAGTCACCTTTAGAAAATGACGGaaaaaaaGATAGATGGGAAG-GTGtttattctc--atattttt-ccAGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135415529 214 + 135778131 AGGGGAAATGTAAATTTGAGTTCTGAAATTGTTTTTGAACACCAGGGTTTCTTCTTTCTGTATTTT--AACTGAGAAGTAAACAAAAAATTTCCACTTAAACACTTAGACATGATTTATTCTATAAGTTAACTCTTTACCATGGAATAAAGTCACCTTTAGAAAATGACGGAAAAAAATATAGATGGGAAG-GTGTTTATTTTC--ATATTTTT-CCAGA
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87645838 214 - 129401213 AGAGTAAATATAAATGTTAGTGCCAAAATTGTTTTTGGATAATTGAGTTTATTATTCCTTTTTTTTGAAATTTAGAAGTAGACAAACATCTCCAACTTCAGTACTTTGGCATGATTGATTTTGTAAGTTCACTCCTTATCATGGAATAAAGTCACCTTTGGAAAATGACGAGCAAAAA-ATAAATGGA----GTTCACATTCACTGATATTTTT-ACAAA
i mm10.chr8                I 1 I 49
s canFam3.chr16             17954309 210 -  59632846 ----GAAATGTAAACTTGGGTTCTTGAATTGGTTTTGAATACC----TTTCTTCTTCCTTTATTTT--AACTGAGAAATAAACAAAAACCCTCCACTTATACACTTTGACATGATTGATGCCGGCAGTTAACTCTTTATCGTGGAGCAAAGTCACCTTTAGAAGATGACAGAAAATAAAATAAATGGTGAGTATGTTTATTCTCTGATACTTTTACCAGA
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190518770   0 - 190850796 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=68216.000000
s hg38.chr4_KI270925v1_alt    278477 39 +    555799 CCCCACAGGAGCAAGGAGGGCGGTAACCCATGCTTTTCT
s panTro4.chr4             192972573 39 + 193495092 CCCCACAGGAGCAAGGAGGGCGGTAACCCATGCTTTTCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198059411 39 + 198332218 CCCCACAGGAGCAAGGAGGGTGGTAACCCATGCTTTTCT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183657243 37 + 184069350 CCCCACCGAAGCAAGGAGA--GGTAACCCATGCTTTTCT
i rheMac3.chr5             C 0 I 46
s macFas5.chr5             189041319 37 + 189454096 CCCCACAGAAGCAAGGAGA--GGTAACCCATGCTTTTCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178469186 37 + 178775436 CCCCACAGAAGCAAGGAGA--GGTAACCCATGCTTTTCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135415743 37 + 135778131 CCCCACAGAAGCAAGGAGA--GGTAACCCATGCTTTTCT
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17954519 38 -  59632846 CCCCAAAGGAA-ATGGAGGAAAATTCTGTGTGCTTATCT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87646052 49 - 129401213 I
e calJac3.chr3             190518770  0 - 190850796 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=29501.000000
s hg38.chr4_KI270925v1_alt    278516 42 +    555799 -TCCCTAAAGCAACAGCCATTTCT------CCCCCCC------------------------------------------CCCAAAAAAAAA
s panTro4.chr4             192972612 84 + 193495092 -TCCCTAAAGCAACAGCCATTTCT------CCCCCCCAaaaaaaacaaaacaaaaaaacaaacaaacaaacaaaaaacaaacaaacaaaaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198059450 53 + 198332218 -TCCCTAAAGCAACAGCCATTTCTACCCTCCCCCCCCACAAA-------------------------------------AAAAAAAAAAAA
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189041356 36 + 189454096 -TTCCTAAAGCAATAGCCATTTCT------CCCC------------------------------------------------aaaaaaaaa
i macFas5.chr5             C 0 I 39
s papAnu2.chr5             178469223 42 + 178775436 -TTCCTAAAGCAATAGCCATttct------cccc------------------------ccc------------------caaaaaaaaaaa
i papAnu2.chr5             C 0 I 9
s chlSab2.chr7             135415780 66 + 135778131 -TTCCTAAAGCAATAGCCATTTCT------CCCaaaaaaaaaaaaaaaaaaaaaaaaatcg------------------caaaaaaaaaaa
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17954557 38 -  59632846 TCCCTTGAAGCAACAGCTGTTTCT------CTC----------------------------------------------AACAAAAGAAA-
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87646052 49 - 129401213 I
e calJac3.chr3             190518770  0 - 190850796 C
e rheMac3.chr5             183657280 46 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=1540685.000000
s hg38.chr4_KI270925v1_alt    278558 784 +    555799  
s panTro4.chr4             192972696 790 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198059503 786 + 198332218  
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183657326 768 + 184069350  
i rheMac3.chr5             I 46 C 0
s macFas5.chr5             189041431 768 + 189454096  
i macFas5.chr5             I 39 I 8
s papAnu2.chr5             178469274 791 + 178775436  
i papAnu2.chr5             I 9 C 0
s chlSab2.chr7             135415846 785 + 135778131  
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17954595 816 -  59632846  
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87646052  49 - 129401213 I
e calJac3.chr3             190518770   0 - 190850796 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=26701.000000
s hg38.chr4_KI270925v1_alt    279342 17 +    555799 GCCTGCTAT-GTTAGAGG
s panTro4.chr4             192973486 17 + 193495092 GCCTGCTAT-GTTAGAGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198060289 17 + 198332218 GCCTGCTAT-GTTAGAGG
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183658094 17 + 184069350 ACCTGCTAT-GTTAGAGG
i rheMac3.chr5             C 0 T 14
s papAnu2.chr5             178470065 17 + 178775436 ACCTGCTAC-GTTAGAGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135416631 17 + 135778131 ACCTGCTAT-GTTAGAGG
i chlSab2.chr7             C 0 T 17
s canFam3.chr16             17955411 18 -  59632846 ACCTGCTACAATTATAGG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87646052 49 - 129401213 I
e calJac3.chr3             190518770  0 - 190850796 C
e macFas5.chr5             189042199  8 + 189454096 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=32854.000000
s hg38.chr4_KI270925v1_alt    279359 59 +    555799 AACTCTACAAATG------AATCACAGGAAACAGAATGGTTACATTGTCAATGAGTAGAATCTGC
s panTro4.chr4             192973503 59 + 193495092 AACTCTACAAATG------AATCACAGGAAACAGAATTGTTACATTGTCACTGAGTAGAATCTGC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198060306 59 + 198332218 AACTCTACAAATG------AATCACATGAAACGGAATGGTTCCATTGTCACTGAGTAGAACCTGC
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178470082 59 + 178775436 AACTGTATAGATG------AATCACATGAAATAGAATGGTTCCGTTGTCACCGAGTAGAACCCAT
i papAnu2.chr5             C 0 I 25
s canFam3.chr16             17955429 65 -  59632846 AACTCTACAAATTATGCTCAATTGAATGAAATTAAATTGCTATACTAACACAGAGTAAAACTCAT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87646052 49 - 129401213 I
e calJac3.chr3             190518770  0 - 190850796 C
e chlSab2.chr7             135416648 17 + 135778131 T
e macFas5.chr5             189042199  8 + 189454096 I
e rheMac3.chr5             183658111 14 + 184069350 T
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=5618.000000
s hg38.chr4_KI270925v1_alt    279418 10 +    555799 TGTCAGAGAA
s panTro4.chr4             192973562 10 + 193495092 TGTCAGAGAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198060365 10 + 198332218 TGTTAGAGGA
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189042207 10 + 189454096 TGTTAGAGGA
i macFas5.chr5             I 8 C 0
s papAnu2.chr5             178470166 10 + 178775436 ttttctagaa
i papAnu2.chr5             I 25 C 0
s canFam3.chr16             17955494 10 -  59632846 TGGCCAATAA
i canFam3.chr16            C 0 I 29
e mm10.chr8                 87646052 49 - 129401213 I
e calJac3.chr3             190518770  0 - 190850796 C
e chlSab2.chr7             135416648 17 + 135778131 T
e rheMac3.chr5             183658111 14 + 184069350 T
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=38476.000000
s hg38.chr4_KI270925v1_alt    279428 51 +    555799 ACTCTATA-ATGAATCACATGAAACAGAATAGTTCCCTTGTCACCGAGTAGA
s panTro4.chr4             192973572 51 + 193495092 ACTCTATA-ATGAATCACATGAAACAGAATAGTTCCCTTGTCACCGAGTAGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198060375 51 + 198332218 ACTCTATG-ATGAATCACATGAAACAGAGTGGTTCCGTTGTCACTGAGTAGA
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189042217 52 + 189454096 ACTGTGTAGACGAATCACATGAAATAGAATGGTTCCGTTGTCACCGAGTAGA
i macFas5.chr5             C 0 T 70
s papAnu2.chr5             178470176 52 + 178775436 aCTGTATAGATGAATCACATGAAATAGAATGGTTCCGTTGCCACCGAGTAGA
i papAnu2.chr5             C 0 I 21
e mm10.chr8                 87646052 49 - 129401213 I
e canFam3.chr16             17955504 29 -  59632846 I
e calJac3.chr3             190518770  0 - 190850796 C
e chlSab2.chr7             135416648 17 + 135778131 T
e rheMac3.chr5             183658111 14 + 184069350 T
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=66043.000000
s hg38.chr4_KI270925v1_alt    279479  70 +    555799 ACC--TGCTATGTTAGAGGAACTCTATAAA---------------------------------------------------------------------TGAATCACATGAAACAGAATGATTCCGTTGTCACCGAGTAGA
s panTro4.chr4             192973623 138 + 193495092 ACC--TGCTATGTTAGAGGAACTCTAT-AATGAATCACATGACACAGAATCGTTCCGTTGTCACCGAGTAGAACTTGCTATGTTAGAGGAACTCTATAATGAATCACATGAAACAGAATCGTTCCGTTGTCACCGAGTAGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198060426  70 + 198332218 ACC--TGCTATGTTAGAGGATCTCTATAAA---------------------------------------------------------------------TGAATCACATGAAACAGAGTGGTTCCGTTGTCACTGAGTAGA
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189042199  70 + 189454096 ACC--TGCTATGTTAGAGGAACTGTGTAGA---------------------------------------------------------------------CGAATCACATGAAATAGAATGGTTCCGTTGTCACCGAGTAGA
i macFas5.chr5             T 70 T 70
s papAnu2.chr5             178470249  72 + 178775436 ACcaatattattttctagaaaCTGTATAGA---------------------------------------------------------------------TGAATCACATGAAATAGAATGGTTCCGTTGCCACCGAGTAGA
i papAnu2.chr5             I 21 C 0
s chlSab2.chr7             135416631  70 + 135778131 ACC--TGCTATGTTAGAGGAACTGTATAGA---------------------------------------------------------------------TGAATCACATGAAATAGAATGGTTCCATTGTCACCGAGTAGA
i chlSab2.chr7             T 17 T 70
e mm10.chr8                 87646052  49 - 129401213 I
e canFam3.chr16             17955504  29 -  59632846 I
e calJac3.chr3             190518770   0 - 190850796 C
e rheMac3.chr5             183658111  14 + 184069350 T
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=4365.000000
s hg38.chr4_KI270925v1_alt    279549 3 +    555799 ACC
s panTro4.chr4             192973761 3 + 193495092 ACC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198060496 3 + 198332218 ACC
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189042199 3 + 189454096 ACC
i macFas5.chr5             T 70 C 0
s papAnu2.chr5             178470321 3 + 178775436 ACC
i papAnu2.chr5             C 0 I 23
s chlSab2.chr7             135416631 3 + 135778131 ACC
i chlSab2.chr7             T 70 C 0
e mm10.chr8                 87646052 49 - 129401213 I
e canFam3.chr16             17955504 29 -  59632846 I
e calJac3.chr3             190518770 0 - 190850796 C
e rheMac3.chr5             183658111 14 + 184069350 T
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=111466.000000
s hg38.chr4_KI270925v1_alt    279552 70 +    555799 TGCTATGTTAGAGGAACTCTATAAATGAATCACATGAAACAGAATGATTCCGTTGTCACCGAGTAGAACC
s panTro4.chr4             192973764 69 + 193495092 TGCTATGTTAGAGGAACTCTATAA-TGAATCACATGAAACAGAATGGTTCCGTTGTCACCGAGTAGAACC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198060499 67 + 198332218 TGT--TGTTAGAGGAACTCTATGA-TGAATCACATGAAACAGAGTGGTTCCGTTGTCACTGAGTAGAACC
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183658097 70 + 184069350 TGCTATGTTAGAGGAACTGTATAGATGAATCACATGAAATAGAATGGTTCCGTTGTCACCGAGTAGAACC
i rheMac3.chr5             T 14 T 56
s macFas5.chr5             189042202 70 + 189454096 TGCTATGTTAGAGGAACTGTGTAGACGAATCACATGAAATAGAATGGTTCCGTTGTCACCGAGTAGAACC
i macFas5.chr5             C 0 T 70
s papAnu2.chr5             178470347 70 + 178775436 tattattttctagaaaCTGTATAGATGAATCACATGAAATAGAATGGTTCCGTTGCCACCGAGTAGAACC
i papAnu2.chr5             I 23 I 116
s chlSab2.chr7             135416634 70 + 135778131 TGCTATGTTAGAGGAACTGTATAGATGAATCACATGAAATAGAATGGTTCCATTGTCACCGAGTAGAACC
i chlSab2.chr7             C 0 T 56
e mm10.chr8                 87646052 49 - 129401213 I
e canFam3.chr16             17955504 29 -  59632846 I
e calJac3.chr3             190518770  0 - 190850796 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=51914.000000
s hg38.chr4_KI270925v1_alt    279622 69 +    555799 TGCTATGTTAGAGGAACTCTAT-AACGAATCACATGAAACAGAATGGTTCCGTTGTCACCGAGTACAACC
s panTro4.chr4             192973833 69 + 193495092 TGCTATGTTAGAGGAACTCTAT-AATGAATCACATGAAACAGAATGGTTCCGTTGTCACCGAGTAGAACC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198060566 70 + 198332218 TGCTATGTTAGAGAAACTCTGTAAATGAATCACATGAAACAGAGTGGTTCCGTTGTCACTGAGTAGAACC
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189042202 70 + 189454096 TGCTATGTTAGAGGAACTGTGTAGACGAATCACATGAAATAGAATGGTTCCGTTGTCACCGAGTAGAACC
i macFas5.chr5             T 70 T 70
s papAnu2.chr5             178470533 70 + 178775436 tattattttctagaaaCTGTATAGATGAATCACATGAAATAGAATGGTTCCGTTGCCACCGAGTAGAACC
i papAnu2.chr5             I 116 T 163
e mm10.chr8                 87646052 49 - 129401213 I
e canFam3.chr16             17955504 29 -  59632846 I
e calJac3.chr3             190518770  0 - 190850796 C
e chlSab2.chr7             135416704 56 + 135778131 T
e rheMac3.chr5             183658167 56 + 184069350 T
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=45991.000000
s hg38.chr4_KI270925v1_alt    279691 67 +    555799 TGCTATGTTACAGGAACTCTATAAATGAATCACATGAAACGGAATGGTTCTGTTGTCACCAAGTAGA
s panTro4.chr4             192973902 66 + 193495092 TGCTATGTTAGAGGAACTCTAT-AATGAATCACATGACACAGAATGGTTCCGTTGTCACCGAGTAGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198060636 65 + 198332218 TGC--TGTTAGAGGAACTCTATAAATGAATCACATGAAACAGAATGGTTCCGTTGTCACTAAGTGGA
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189042202 67 + 189454096 TGCTATGTTAGAGGAACTGTGTAGACGAATCACATGAAATAGAATGGTTCCGTTGTCACCGAGTAGA
i macFas5.chr5             T 70 T 70
s papAnu2.chr5             178470440 67 + 178775436 tattattttctagaaaCTGTATAGATGAATCACATGAAATAGAATGGTTCCGTTGCCACCGAGTAGA
i papAnu2.chr5             T 163 I 21
e mm10.chr8                 87646052 49 - 129401213 I
e canFam3.chr16             17955504 29 -  59632846 I
e calJac3.chr3             190518770  0 - 190850796 C
e chlSab2.chr7             135416704 56 + 135778131 T
e rheMac3.chr5             183658167 56 + 184069350 T
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=9975.000000
s hg38.chr4_KI270925v1_alt    279758 17 +    555799 ACC--TGCTATGTTAGAGA
s panTro4.chr4             192973968 17 + 193495092 ACC--TGCTATGTTAGAGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198060701 17 + 198332218 ACC--TGCTATGTTAGAGG
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189042199 17 + 189454096 ACC--TGCTATGTTAGAGG
i macFas5.chr5             T 70 C 0
s papAnu2.chr5             178470528 19 + 178775436 ACcaatattattttctaga
i papAnu2.chr5             I 21 C 0
e mm10.chr8                 87646052 49 - 129401213 I
e canFam3.chr16             17955504 29 -  59632846 I
e calJac3.chr3             190518770  0 - 190850796 C
e chlSab2.chr7             135416704 56 + 135778131 T
e rheMac3.chr5             183658167 56 + 184069350 T
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=12234.000000
s hg38.chr4_KI270925v1_alt    279775 8 +    555799 AACTCTAT
s panTro4.chr4             192973985 8 + 193495092 AACTCTAT
i panTro4.chr4             C 0 I 754
s ponAbe2.chr4             198060718 8 + 198332218 AACTCTAT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183658111 8 + 184069350 AACTGTAT
i rheMac3.chr5             T 56 C 0
s macFas5.chr5             189042216 8 + 189454096 AACTGTGT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178470547 8 + 178775436 aaCTGTAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135416648 8 + 135778131 AACTGTAT
i chlSab2.chr7             T 56 C 0
e mm10.chr8                 87646052 49 - 129401213 I
e canFam3.chr16             17955504 29 -  59632846 I
e calJac3.chr3             190518770 0 - 190850796 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=1365.000000
s hg38.chr4_KI270925v1_alt    279783 1 +    555799 A
s ponAbe2.chr4             198060726 1 + 198332218 A
i ponAbe2.chr4             C 0 I 66
s rheMac3.chr5             183658119 1 + 184069350 A
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189042224 1 + 189454096 A
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178470555 1 + 178775436 A
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135416656 1 + 135778131 A
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87646052 49 - 129401213 I
e canFam3.chr16             17955504 29 -  59632846 I
e calJac3.chr3             190518770 0 - 190850796 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192973993 754 + 193495092 I

a score=517427.000000
s hg38.chr4_KI270925v1_alt    279784 323 +    555799 AATGAATCACATGAA---------------------------------------------------------------------ACAGAATGATTCCGTTGTCATCGAGTAGAACCCATTGGCCAATAACT-------TTGACAAATATTATTTTCTGGATATTAAACACAAACATAAATATTAAAAatgtttatgttggccaggcgtggtggctcacgcctgtaatcctagcacttttggaggcccaggcgggcagatcacaaggtcaagagatcgagaccagcccggtcaacatggtgaaaccctgtctctactaaaaataaaaaaattagctgggcatggtggtgtgtacctgtaatcccagctactcaggaggctgaggcag------------------------------------cagaatctcttga
s panTro4.chr4             192974747 323 + 193495092 AATGAATCACATGAA---------------------------------------------------------------------ACGGAATGGTTCCGTTGTCACCGAGTAGAACCCATTGGCCAATAACT-------TTGACAAATATTATTTTCTGGATATTAAACACAAACATAAATATTAAAAATGTTTATGTTggccaggggtggtggctcacacctgtaatcctagcacttttggaggcccaggtgggcagatcacaaggtcaagagatcgagaccagcccggtcaacatggtgaaaccctgtctctactaaaaataaaaaaattagctgggcatggtggtgtgtgcctgtaatcccagctactcaggaggctgaggcag------------------------------------cagaatctcttga
i panTro4.chr4             I 754 I 2747
s ponAbe2.chr4             198060793 392 + 198332218 AATGAATCACATGAAACAAAATGGTTCCATTGTCACCAAGTAGAACCTGCTATGTTAGAGGATCTCTATAAGGAATCACATGACACGGAATGGTTCCATTGTCACCGAGCAGAACCCATTGGCCAGTAACT-------CTGACATATATTATTTTCTGGATATTAAACACAAACATAAATATTAAAAATGTTTATGTTggccaggcatgatggcttatgccagtaatcccagcactttcggaggcccaggcggacacatcatgaggtcaagagattgagaccagcctggccaacatggtgaaaccccgtctctaataaaaatacaaaaattagccgggcatggtggtgcactcctgtaatcccagctactcaggaggctgaggcag------------------------------------gagaattgtttga
i ponAbe2.chr4             I 66 C 0
s rheMac3.chr5             183658120 358 + 184069350 GATGAATCACATGAA---------------------------------------------------------------------ATAGAATGGTTCCGTTGTCACCGAGTAGAACCCATTGCTCAATAGCT-------CTGACCAATATTATTTTCTAGATATTAAACAC-AACATAAATATTTAAAATGTTTATATTggccaggcatggtggctcacacctgtaatcccagcactttgggaggcccagtcaggcggatcatgaggtcaagagattgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagctgggtgtggtggagcgcacctggagtgccagctactcaggaggctgaggcaggagaattgcttgaacgctggaggtggtgggggtttcaagaattgcttga
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189042225 322 + 189454096 GACGAATCACATGAA---------------------------------------------------------------------ATAGAATGGTTCCGTTGTCACCGAGTAGAACCCATTGCTCAATAGCT-------CTGACCAATATTATTTTCTAGATATTAAACAC-AACATAAATATTTAAAATGTTTATATTggccaggcatggtggctcacacctgtaatcccagcactttgggaggcccagtcaggcggatcatgaggtcaagagattcagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagctgggtgtggtggtgcgcgcctgtagtgccagctactcaggaggctgaggcag------------------------------------aagaattgcttga
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178470556 322 + 178775436 GATGAATCACATGAA---------------------------------------------------------------------ATAGAATGGTTCCGTTGCCACCGAGTAGAACCCATTGCTCAGTAGCT-------CTGACCAATATTATTTTCTAGATATTAAAcac-aacataaatatttaaaatgtttatgttggccaggcatggtggctcacgcctgtaatcccagcactttgggaggcccagtcaggcggatcatgaggtcaagagattgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagccgggcgtggtggtgcgcacctgtagtgccagctactcgggaggctgaggcag------------------------------------gagaatcgcttga
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135416657 328 + 135778131 GATGAATCACATGAA---------------------------------------------------------------------ATAGAATGGTTCCATTGTCACCGAGTAGAACCCATTGCTCAATAGCTCTGACCACTGACCAATATTATTTTCTAGATATTAAACAC-AACATAAATATTTAAAATGTTTATATTggccagacatggtggctcacacctgtaatcccagcactttgggagacccagtcaggcggatcatgaggtcaagagattgagatgatcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagctgggcgtggtggcg-gcgcctgtagtgccagctactcgggaggctgaggcag------------------------------------gagaatcgcttga
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87646052  49 - 129401213 I
e canFam3.chr16             17955504  29 -  59632846 I
e calJac3.chr3             190518770   0 - 190850796 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=95925.000000
s hg38.chr4_KI270925v1_alt    280107 89 +    555799 acccagga---gggggagtttgcactgagccgaaattgtgccactgcactccagcctgggcgacagagcaagactccatct----caaaaaaaaaa
s ponAbe2.chr4             198061185 89 + 198332218 acctggga---ggcggaggttgcactgagccaaaattgtgccactgcactccagcctgggcaaaagagcgagactccgtct----caaaaaaaaaa
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183658478 93 + 184069350 accctggaggtggtgggggtttcaatgagccgaaattacaccactgcactccagcctgggcgatggagagagactccatct---aaaaaaaaaaaa
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189042547 92 + 189454096 accctggaggtggtgggggtttcaatgagccgaaattgcaccactgcactccagcctgggcgatggagagagactccatct----aaaaaaaaaaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178470878 91 + 178775436 accctggaggaggtggaggtttcaatgagccgaaattgcaccactgcactgcagcctgggcgatggagagagactccgtct----aaaaaaaaaa-
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135416985 96 + 135778131 accctggaggtggtggaggtttcaatgagccgaaattgcaccactgcactccagcctgggcgatggagagagactccatctaaaaaaaaaaaaaaa
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87646052 49 - 129401213 I
e canFam3.chr16             17955504 29 -  59632846 I
e calJac3.chr3             190518770  0 - 190850796 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192975070 2747 + 193495092 I

a score=174491.000000
s hg38.chr4_KI270925v1_alt    280196 126 +    555799 aaaaa-tgtttatgttgaagacaatgtttC-----CATCCACAGATCT--AAGAGATTTGCCCTCAAATTACAAACTGTTTTGTAAAGT-GAACAAAAATGCCCCACGACTCTCCCTACATTT-TTTA----ATATCATT
s ponAbe2.chr4             198061274 130 + 198332218 aaaaaGTGTTTATGTTGAAGACAATGTTTC-----CACCCACAGATCTCTAAGAGATTTGCCCTAAAATTACAAACTGTTTTGTAAAGTAGAACACAAATGCCCCACGACTCTCCCTACATTT-TTTT----ATATTGTT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183658571 128 + 184069350 aaaaa-TGTTTATGTTGAGGACCATGTTTC-----CATCCACAGAGCT--AAGAGATTTGCCCTCAAATTACAAACTGTTTTGTAAAGTAGAACAGAAATGCCCCACGACTCTCCCTTCATTTATTTT----ATATTGTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189042639 128 + 189454096 aaaaa-TGTTTATGTTGAGGACCATGTTTC-----CATCCACAGAGCT--AAGAGATTTGCCCTCAAATTACAAACTGTTTTGTAAAGTAGAACAGAAATGCCCCACGACTCTCCCTTCATTTATTTT----ATATTGTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178470969 121 + 178775436 -------gtttatgttgAGGACCATGTTTC-----CATCCACAGAGCT--AAGAGATTTGCCCTCAAATTA-AAACTGTTTGGTAAAGTAGAACAGAAATGCCCCACGACTCtcccttcatttatttt----atattgtt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135417081 128 + 135778131 aaaaa-aGTTTATGTTGAGGGCCATGTTTC-----CATCCACAGAGCT--AAGAGATTTGCCCTCAAATTACAAACTGTTTTGTAAAGTAGAACAGAAATGCCCCACGACTCTCCCTTCATTTATTTT----ATATTGTT
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17955533 135 -  59632846 AAAAG-TGGTTGTGTTCAAGACAGAGTTTCTAAAGCATCTATACATGC--AACAGATTTGCCCTCAAGTTACAAACTATTTTGTAAAGTAGAA-AAAAATGTCCC-TGGCTCTGCCTAATTTTCTTTTTTAAAAATTATC
i canFam3.chr16            I 29 C 0
e mm10.chr8                 87646052  49 - 129401213 I
e calJac3.chr3             190518770   0 - 190850796 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192975070 2747 + 193495092 I

a score=555838.000000
s hg38.chr4_KI270925v1_alt    280322 308 +    555799 -CCTGTGATCATTATCTC-TCTTTTCAATAAGTT-TCTCATTCAAACAAACTGGAAAA--TTCAGGTGATTATCTGAATCAAAAGACATATATTTTACCTAAATTATCAGAACAAGGCTCTTAAACATTTTGCTTTG-------CTGTGGTTATGCAGACTTGTTCTCTGTGCACTAAAGCCTCCCAAATCATTTACATTATTTTGATCCCTGGTCATATAAATTATTAGTTCTGCT---TTAGAGATCAGGAAATTGATGCATTTCATTTTTGCATTTAACTCATA---TTAAGGTGGTCCCTTTACTAAAAGTGgaagacataa
s panTro4.chr4             192977817 308 + 193495092 -CCTGTGATCATGGTCTC-TCTTTTCAATAAGTT-TCTCATTCAA-CAACCTGGAAAAA-TTCAGGTGATTATCTGAATCAAAACACATATATCTTACCTAAATTATCAGAACAAGGCTATTAAACATTTTGCTTTG-------CTGTAGTTATGCAGACTTGTTCTCTGTGCACTAAAGCCTCCCAAATCATTTACATTATTTTGATCCCTGGTCATATAAATTATTAGTTCTGCT---TTAGAGATCAGGAAATTGATGCATTTCATTTTTGCATTTAACACATA---TTAAGGTGGTCCCTTTACTAAAAGTGgaagacataa
i panTro4.chr4             I 2747 C 0
s ponAbe2.chr4             198061404 313 + 198332218 -CCTGTGATCATTGTCTC-TCTTTTCAACACGTT-TCTCATTCAAACAAACTGGAAAA--TTCAGGTGATTATCTGAATCAAAAAACAGATATTTTACCTAAATTATCAGAACTAGGCTCTTAAACATTTTGCTTTACTGTGGCCTGTGGCTAAGCAGACTTGTTCTCTGTGCACTAAAGCCTCCCAAATCATTTACATTATTTTAACCCCTGGTCATATAAATTATTAGTTCTGCT---TTAGAGATTAGGAAATTGATGCATTTC--TCTTGCATTTTACACATA---TTAAGGTGGTCAGTTTACTAAATGTGGAAGACATAA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183658699 287 + 184069350 -CCTGTGATCATTGTCTC-TCTTTTCAACAAGTT-TCTCGTTCAAACAAAGTGGAAAA--TTCAGGTGATTATCTGAGTCAAAAAACAGATATTTTACCTAAGTTATCAGA--------------------GCTTTG-------CTGTGACTGTGCGGACTTGCTCTCTGTGCACTAAAGGCTCCCAAATCATTTACATTATTTTAGT-CCTGGTCATATAAATTATTAGTTCTGCT---TTAGAGATTAGGAAATTGATGCATTTCATTCTTGCATTTAACACATA---TCAAGGTGGTCACTTTACTAAATGTGGAAGACATGA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189042767 287 + 189454096 -CCTGTGATCATTGTCTC-TCTTTTCAATAAGTT-TCTCGTTCAAACAAAGTGGAAAA--TTCAGGTGATTATCTGAGTCAAAAAACAGATATTTTACCTAAGTTATCAGA--------------------GCTTTG-------CTGTGACTGTGCGGACTTGCTCTCTGTGCACTAAAGGCTCCCAAATCATTTACATTATTTTAGT-CCTGGTCATATAAATTATTAGTTCTGCT---TTAGAGATTAGGAAATTGATGCATTTCATTCTTGCATTTAACACATA---TCAAGGTGGTCACTTTACTAAATGTGGAAGACATGA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178471090 287 + 178775436 -cctGTGATCATTGTCTC-TCTTTTCAATAAGTT-TCTCGTTCAAACAAAGTGGAAAA--TTCAGGTGATTATCTGAGTcaaaaaacagatattttacctAAGTTATCAGA--------------------GCTTTG-------CTGTGACTGTGCGGACTTGCTCTCTGTGCACTAAAGGCTCCCAaatcatttacattattttagt-CTTGGtcatataaattattaattctGCT---CTAGAGATTAGGAAATTGATGCATTTCATTCTTGCATTTAACACATA---TCAAGGTGGTCACTTTACTAAATGTGGAAGACATAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135417209 287 + 135778131 -CCTGTGATCGTTGTCTC-TCTTTTCAATAAGTT-TCTCGTTCAAACAAAGTGGAAAA--TTCAGGTGATTATCTGAGTCAAAAAGCAGATATTTTACCTAAGTTATCAGA--------------------GCTTTG-------CTGTGACTGTGCGGACTTGCTCTCTGTGCACTAAAGGCTCCCAAATCATTTACATTATTTTAGT-CCTGGTCATATAAATTATTAGTTCTGCT---TTAGAGATTAGGAAATTGATGCATTTCATTCTTGCATTTAACACATA---TCAAGGTGGTCACTTTACTAAATGTGGAAGACATAA
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17955668 299 -  59632846 CCTAATGAGTGTTGTCTCTTTTTTTCAATGACTTCTCACATCTAAGCAAAATTGAGATGTTTCAGATG--------------GAAGCAGATATTTTGCCTAAATTATCTGA-----GTGTTTTAAACTTCTGCTTTG-------CTATGGTTATGTAGACTTGGCCTCTATGCACTGAAGttttttaaatcatttaaattattttaatCCTTTATAATATAGGTCATCATAACTGATGACCTAGAAATTGGGCAATTTGTGCATTT-GCTCTTAAATTTAATACATATTTTTAAGATGGGGACTTTATTAAATGTGAAGAATAAAA
i canFam3.chr16            C 0 I 18
e mm10.chr8                 87646052  49 - 129401213 I
e calJac3.chr3             190518770   0 - 190850796 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=659618.000000
s hg38.chr4_KI270925v1_alt    280630 318 +    555799 agattaatgtgattcagtctctgcccaaaaggaactcacaCAGATAAGCATATAGATTTTAATATAAAAACATATAAACCATGGAATGTTCTATAATA-------------------------AATCTATAACAAAGATTTAAGT------------------ACACGCAGAAGCCTGGAGATGCCAGTCGGTGCCACAGTCGGATGAAAGGATATATGCGCCAGCCCTTTCTAAATGTTACC-AGTGCTGTGCTT-AGTTAAGAGAATTGGTGGCCAAACTAGAAACCAACTCATTTTCAGTAGCTACACAGACTACCATGAAGAAATGA-CTCGGGACAAATGACTATAAACCTTGGGTCAA
s panTro4.chr4             192978125 320 + 193495092 agattaatgtgattcagtctctgcccaaaaggaactcacaCAGATAAGCATATAGATTTTAGTATAAAAACATATAAACCATGGAACGTTCTATAATA-------------------------AATCTATAACAAAGATTTAAGT------------------ACACGCAGAAGCCTGGAGATGCCAGTCAGTGCCACAGTCGGATGAAAGGATATATGTGCCAGCCCTTTCTAAATGTTACC-AGTGCTGTGCTTGAGTTAAGAGAATTGGTGGCCAAACTAGAAACCAACTCACTTTCAGTAGCTACACAGACTACCATGAAGAAATGAGCTCGGGACAAATGACTATAAACCTTGGGTCAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198061717 319 + 198332218 ATATTAGTGTGATTCAGTCTC-GCCTGAAAGGAACTCACACAGATAAGCATATAGATTTTAGTATAAAAACATATAAACCACAGAACATTCTATAATA-------------------------AATCTATAACAAAGATCTAAGT------------------ACACGCAGAAGCCTAGAGATGCCAGTCGGTGCCATAGTCGGATGAGAGGATATATGTGCCAGCCCTTTCTAAATGTTACC-AGTGCTATGCTTGAGTTAAGAGAATTGGTGGTCAAACTAGAAATCCACTCATTTTCAGTAGCTATATACACTCCCATGAAGAAATGAGCTCTGGAGAAATGACTATAAACCTTGGGTCAA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183658986 320 + 184069350 AGATTAATGTGATTCAGTCTCTGACCAAAAGGAACTCGCACAGATAAGCATATAGACTTCACTATAAAACCATAGAAACCACGGAATATTCTATAATA-------------------------AATCTATAACAAAGATCTAAGT------------------GCACACAGAAGCCTGGAGACGCCAGTCAGTGCCACAGTCGGAGGAGAGGATCTATGCGCCAGCCCTTTCGAAATGTTGCC-AGTGCTGTGCTTGAGGTAAGAGAATTGGTGGTCAGACTAGAAACCCTCTCATTTTCAGTAGCTACAAACACACCCATGAAGAAATGAGCTCTGGATAAATAACTCTAAACCTTGGGTCAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189043054 320 + 189454096 AGATTAATGTGATTCAGTCTCTGACCAAAAGGAACTCGCACAGATAAGCATATAGATTTCACTATAAAACCATAGAAGCCACGGAACGTTCTATAATA-------------------------AATCTATAACAAAGATCTAAGT------------------GCACACAGAAGCCTGGAGACGCCAGTCAGTGCCACAGTCGGAGGAGAGGATCTATGCGCCAGCCCTTTCGAAATGTTGCC-AGTGCTGTGCTTGAGGTAAGAGAATTGGTGGTCAGACTAGAAACCCTCTCATTTTCAGTAGCTACAAACACACCCATGAAGAAATGAGCTCTGGATAAATAACTCTAAACCTTGGGTCAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178471377 320 + 178775436 AGATTAATGTGATTCAGTCTCTGACCAAAAGGAACTCGCACAGATAAGCATATAGACTGCACTATAAAACCATAGAAACCACGGAACATTCTATGATA-------------------------AATCTCTAACAAAGATCTAAGT------------------GCACGCAGAAGCCTGGAGACGCCAGTCGGTGCCACAGTCGGAGGAGAGGATCTATGCGCCAGTCCTTTCGAAATGTTGCC-AGTGCTGTGCTTGAGGTAAGAGAATTGGTGGTCAGACTAGAAACCCTCTCATTTTCAGTAGCTACAAACACACCCATGAAGAAATGAGCTCTGGATAAATAACTCTAAACCTTGGGTCAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135417496 305 + 135778131 AGATTAATGTGATTCAGTCTCTGACCAAAAGGAACTCGCACAGATAAGCATATAGATTTCACTATAAAACCATAGAAACCACGGAACGTTCTAT-----------------------------AATCTATAACAAAGATCTAAGT------------------GCATGAAGAAGCCTGGAGACGCCCGTCGGTGCCATAGTCAGATGACAGGATCTATGCGCCAGCCCTTCCTAAATGTTGCC-AGTGCTGTGCTTGAGGTAAGAGAATTGGTGGTCAGACTAGAAACCCTCTCGTTTTCAGTAGCTA-----------ATGAAGAAATGAGCTCCGGATAAATAACTCTAAACCTTGGGTCAA
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87646101 326 - 129401213 AAACTAATTAGATTCAGACTCAGCCCCAAGAGAATTCACACACATAAACATAT--ATTTCACTATAAA--CTTATTAACAGTGGGATATTCTACAATG-------------------------AAACTATAATAA-----TAAGCACATAGAATAACAATATAGCATACAGAAACCTGGAGAGACTGATTA-TGCCATA-TCAGTTAAAGGAACATATGTAAAAAATCTTTATAAATGTTACTAAGGACCATGCTTGAGGTTGGATAACTTATGACCA-ACCAGAAGCCTGCTTATTTACCATGAACCCAAACTATTCTTTGGA-AAGTGATCTACAGTCAAACCTCTATAAACCTAAAATCAA
i mm10.chr8                I 49 C 0
s canFam3.chr16             17955985 314 -  59632846 ATATAAATGTGATTGAGTTGCCAACCATAATGAGCTCACA--------CATACAGATTTTCACATAAAA--ATATGAACAGTGATATGTTCTATAATACTACAGTTACATATATTTAAAGTTTTAACTATAACAAAGATCTATGC------------------GTACACAGAAGCCTAGAGAGGCTGATCT-TGCCATAGTCACATGAGAGAATACACATGCAAGTCATTTATAAATTTTATC---------------------AGAATTGGTAATCAAACTAGAAACCCACTCATTTACAATAGATACACACCATTTCATGGTGAAATGGGCTCTGGTCAAATACCTATAAATCTTGGATCAA
i canFam3.chr16            I 18 C 0
e calJac3.chr3             190518770   0 - 190850796 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=558772.000000
s hg38.chr4_KI270925v1_alt    280948 361 +    555799 ATAGCAacaaagattctcttcttgaccaaactctagtcaggctcctctgagctactttttcaacaaggtctcatccttgggccttgtcctcaagagccaagagccagaaacctgctaagtcagtttagccaga-acctcc----cgccctcaacaagtgttctgatcaatttcctcactcctcccagaacctcctgcactcaacgtgtgttctgagcaatgtcctcactcccccaccatccccaggtgatatctcagcactctagtgcctgcaggattc----tgaataagttcagac-agaatcccctgtactcctgaggttttttcttcataatttggcacctactgactcccacccttggctgtaaat
s panTro4.chr4             192978445 361 + 193495092 ATAGCAacaaagattctcttcttgaccaaactctagtcaggctcctctgagctactttttcaacaaggtctcatccttgggccttgtcctcaagagccaagagccagaaacctgctaagtcagtttagccaga-acttcc----cgccctcaacaagtgttctgatcaatttcctcactccccacagaacctcctgcactcaacgtgtgttctgagcaatgtcctcactcccccaccatccccaggtgatatctcagcagtgtagtgcctgcaggattc----tgaataagttcagac-agaatcccctgtactcctgaggttttttcttcataatttggcacctactgactcccacccttggctgtaaat
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198062036 311 + 198332218 ATAGCAacaaagattatcttcttgaccaaactctagtcaggctcctctgagctactttttctacagggtctcatccttgggccttgtcctcaagagccaagagccagaaacctgctaagtcagtttagccaga-acctcc----tgccctcaaca--------------------------------------------------tatgttctgagcaatgtcctcactcccccaccatccccaggtgatatctcagcactctagtacctgcaggattc----ttaataagttcagac-agaatcccctgcactcctgaggttttctcttcataatttggcacctactgactcccacccttggctgtaaat
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183659306 310 + 184069350 ATGACAacaaaggttcttttcttgacccaactctagtcaggctcctctgagctactttttgaacaaggtctcatccttgggccttgtcctcaag-gccaagagccagaaacctgatgagtcggtttagccaga-acctcc----cgccctcaaca--------------------------------------------------taagttctgatcagtgtcctcactcccccaccatccccaggtaatatctcagcactctagtgcctccaggattc----tgagtaagttcagac-agaatctcctgtactcctgaggttttctgttcataatttggcacctactgactcccacccttggctgtaaat
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189043374 310 + 189454096 ATAACAacaaaggttcttttcttgacccaactctagtcaggctcctctgagctactttttgaacaaggtctcatccttgggccttgtcctcaag-gccaagagccagaaacctgatgagtcggtttagccaga-acctcc----cgccctcaaca--------------------------------------------------taagttctgatcagtgtcctcactcccccaccatccccaggtaatatctcagcactctagtgcctccaggattc----tgagtaagttcagac-agaatctcctgtactcctgaggttttctgttcataatttggcacctactgactcccacccttggctgtaaat
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178471697 306 + 178775436 ATAACAACAAAGATTCTCTTCTTGACCCAACTCTAGTCA-GCTCCTCTGAGCTACTTTTTG-ACAAAGTCTCATCCTCGGGTCTTGTCCTCAAG-GCCAAGAGCCAG-AACCTGATGAGTCGGTTTAGCCAGA-ACCTCC----CGCCCTCAACA--------------------------------------------------TAAGTTCTGATCAGTGTCCTCACTCCCCCACAA-CCCCAGGTAATATCTCAGCACCCTAGTGCCTCCAGGATTC----TGAGTAAGTTCAGAC-AGAATCTCCTGTACTCCTGAGGTTTTCTGCTCATAATTTGGCACCTACTGACTCCCACCCTTGGCTGTAAAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135417801 310 + 135778131 ATAACCacaaaggttctcttcttgacccaactctagtcaggctcctctgagctactttttgaacaaggtctcatcctcgggccttgtcctcaag-accaagagccagaaacctgctgagtcggtttagcccga-acctcc----tgccctcaaca--------------------------------------------------taagttgtgatcaatgtcctcactcccccaccagccccaggtaatatctcagcactctagtgcctccaggattc----tgagtaagttcagac-agaatctcctgtactcctgaggttttctgttcataatttggcacctactgactcccacccttggctgtaaat
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87646427 286 - 129401213 ATAATGCTCAAA------CTcttcaccaaacactatccaggttcttttaagttagtttttcaattaagttccatacttaagcctcttcctcaag-------attcagaatcctgatcaaaca-ttcagctagatacattctcggtatcgttggta--------------------------------------------------ttatagctgatcaaactccccattctttc-ttatccccaggtgatgttt---tgctctgtcttcaacaagaatcatggtgaattggtttaaccaagaacactttttgctcctgatggtt----------------cacctcttgagcccc-ctcttgtttgtaaat
i mm10.chr8                C 0 C 0
e canFam3.chr16             17956299   0 -  59632846 C
e calJac3.chr3             190518770   0 - 190850796 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=218224.000000
s hg38.chr4_KI270925v1_alt    281309 89 +    555799 cctcacttgtccctgatatatttagagctgagtccaatttctct-ccctactgtaaaaccccatggcagtggtctcttaacctatcaaga
s panTro4.chr4             192978806 89 + 193495092 cctcacttgtccctgatagatttagagctgagtccaatttctct-ccctactgtaaaaccccatggcagtggtctctttacctatcaaga
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198062347 89 + 198332218 cccctcttgtccttgatatatttggagctgagtccaatttctct-ccctactgtaaaaccccatggcagtggtctctttacctatcaaga
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183659616 89 + 184069350 ccccacttgtccctgatatatttggagctgagtccaatttcact-ccctactgtaaaaccccatggcagtggtctctgtacctatcaaga
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189043684 89 + 189454096 ccccacttgtccctgatatatttggagctgagtccaatttcact-ccctactgtaaaaccccatggcagtggtctctgtacctatcaaga
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178472003 89 + 178775436 CCCCACTTGTCCCTGATATATTTGGAGCTGAGTCCAAGTTCACT-CCCTACTGTAAAACCCCATGGCAGTGGTCTCTGTACCTATCAAGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135418111 89 + 135778131 ccccacttgtccctgatatatttggagctgagtccaatttcact-ccctactgtaaaaccccatggcagtggtctccgtacctatcaaga
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190518770 90 - 190850796 ccccacttgcccgtgatgtgtttgcagctgagcccagtttctctcccccaccgtgaaagcccatggcagtgatctctttgcttatcaagg
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87646713 82 - 129401213 ----tctcacctatgatacatttgtggctgaacccagtctcttt--tctatcacataacctcactgatataatttct--accaatcaaga
i mm10.chr8                C 0 I 637
e canFam3.chr16             17956299  0 -  59632846 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=129331.000000
s hg38.chr4_KI270925v1_alt    281398 65 +    555799 taatcccgctgaatgaattcggccttattgttttaacaaatgtcatgaatga---ttttttt-----tCGATG
s panTro4.chr4             192978895 64 + 193495092 taatccccctgaatgaattcggccttattgttttaacaaatgtcatgaatga---ttttttT------CGATG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198062436 70 + 198332218 tagtccccctgaatgaactcggtcttattgttttaacaaatgtcatgaatta---ttttttttttTTTTGATG
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183659705 67 + 184069350 tagtccccctgaataaactcagccttattgttttaacaaatgtcatgaatga---ttttttt---tCCCGATA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189043773 67 + 189454096 tagtccccctgaataaactcagccttattgttttaacaaatgtcatgaatga---ttttttt---ttCCGATA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178472092 67 + 178775436 TAGTCCCCCTGAATAAACTCAGCCTTATTGTTTTAACAAATGtcatgaatga---atttttt---tttcgaTA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135418200 70 + 135778131 tagtccccctgaataaactcagccttattgttttaacaaatgtcacgaatgatttttttttt---TTTCGATA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190518860 68 - 190850796 taggccccctgaatgaactctgttttatcattttaacaaacgtcatgagtga---ttctttt--ttCTTGTCA
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87646795 637 - 129401213 I
e canFam3.chr16             17956299  0 -  59632846 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=1221495.000000
s hg38.chr4_KI270925v1_alt    281463 513 +    555799  
s panTro4.chr4             192978959 513 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198062506 505 + 198332218  
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183659772 510 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189043840 509 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178472159 509 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135418270 509 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190518928 462 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17956299 498 -  59632846  
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87646795 637 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=2298222.000000
s hg38.chr4_KI270925v1_alt    281976  957 +    555799  
s panTro4.chr4             192979472  930 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198063011  906 + 198332218  
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183660282  891 + 184069350  
i rheMac3.chr5             C 0 I 266
s macFas5.chr5             189044349  891 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178472668  898 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135418779  897 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190519390  859 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87647432 1006 - 129401213  
i mm10.chr8                I 637 I 1
s canFam3.chr16             17956797  928 -  59632846  
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=699786.000000
s hg38.chr4_KI270925v1_alt    282933 398 +    555799 atacagtttaacgtatatttcccataagacttagcaatcacactcctggatagttgcccaagagaaatgaaaacatatgtacccataaatacttgcatgcaaatattacagtgggtttattcacagtagccaaaaactggaggaaaa--gaaaaaaaatcaaaatttccatcaactggtgaataaattctggtacatttatacacctgaactctacgaagcaat--gaaaaggaaacaactactgatacgatcaagaac--gaatgaatatcaaaaatattagtctacatgaaa----gaaacgag------------gca----------cagactgtctgtttccatttagatgccattctag--agaaggcaacactaggaacagaaagcagacaagtggctgc--agggctgggtctcaggaaagacgac
s panTro4.chr4             192980402 396 + 193495092 atacggtttaacgtatatttcctgtaagacttagcaatcacactcctggatagttgcccaagagaaatgaaaacatatgtacccataaatacttgcatgcaaatattacagtgggtttattcacactagccaaaaactggaggaaaa--gaaaaaaaatcaaaatttccatcaactggtgaataaattctggtacatttatacacctgaactctacgaagcaat--gaaaaggaaacaactactgatacgatcaagaac--gaatgaatatcaaaaatattagtctacatgaaa----gaaacgag------------gca----------cagactgt--gcttccatttagatgccaatctag--agaaggcaacaccaggaacagaaagcagacgagtggctgc--agggctgggtctcaggaaagacgac
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198063917 398 + 198332218 atatggtttaacgtatatttcccataagacttagcaatcacactcctggatagttgcccaagagaaatgaacacatatgtacacataaatacttgcatgcaaatattacagtgggtttattcactgtagccaaaaactggaggaaaa--gaaaaaaaatcaaaatttccatcaactggtgaataaattctggtacatttatacacctgaactctacgaagcaat--gaaaaggaaacaactactaatacgatcaagaac--gaatgaatatcaaaaatattagtctatgtgaaa----gaaaccag------------gca----------caggctgtctgattgcatttagatgccattctag--agaaggcaacactaggaacagaaagcagatcagtggctgc--agggctgggtctcagggaagacgac
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189045240 393 + 189454096 ctatggtttaatgtatatttcctgtaagacttagcggtcacactcctggatagttgcccaagaggaatgaaaacatatgta-acgtaaatacttgcatgcagatattacagtgggtttattcacagcagccaaagccttgaggaaaag-aaaaaaaaatcaaaatttccatcaactggtgaataaattctggtacatttatacacctgaattctactaagcaat--gacaaggcaacaatcactgatgcaaacaacaac--aaatgaatatccaaaatatcagtctacacgaaa----gaaaccag------------gca----------cagact----gagtccatttagatgccattctag--agaaggcaacactaggaacagaaagcggatgaggggctgc--agggctgggtctca-gggagaggat
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178473566 390 + 178775436 ctaTGGTTTAATGTATATTTCCTGTAAGACTTAGCAGTCACACTCCTGGATAGTTGCCCAAgaggaatgaaaacatatgta-ACATAAATACTTGCATGCAGATATTACAGTGGgtttattcacagtagccaaagccttgaggaa----aaaaaaaaatcaaaatttccatcaactggtgaataaATTCTGGTACATTTATACACCTGAATTCTACTAAGCAAT--GACAAGGCAACAATCACTGATGCAAACAACAAC--GAATgaatatccaaaatatcagtCTACATGAAA----GAAACCAG------------GCA----------CAGACT----GATTCCATTTAGATGCCATTCTAG--AGAAGACAACACTAGGAACAGAAAGCGGATGAGGGGCTGC--AGGGCTGGGTCTCA-GGGAGAGGAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135419676 395 + 135778131 ctatggtttaatgtatatttcctgtaagacttagcagtcacactcctggatagttgcccaagaggaatgaaaacatatgta-acataaatacttgcatgcaaatattacagtgggtttattcacagtagccaaagccttgaggaaaagaaaaaaaaaatcaaaatttccatcaactggtaagtaaattctggtacatttatacacctgaattctactaagcaat--gacaaggaaacaatcaccgatgcaaacaacaac--gaacgaatatccaaaatattagtctacatgaaa----gaaaccag------------gca----------cagact----gattccatttagatgccattctag--agaaggcaacactaggaacagaaagcagatgaggggctgc--aggcctgggtctcaggggagagaat
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190520249 393 - 190850796 -------ttcacaaatatttcccgcaagacttagcagtcacactcctggatagttgcccaagagaaatgaaaatgtgtgtttgcacaaatatgtgcaggcagatattccggcagctttattctcagtagcccaaaactggagggaaagaagaaaaaaatcaaaatttccatcagtgggtaagtcaatcgtggtacatttatacatctgaattttactaagccgt--gaaaaggaaacaacggccgatacagccaacaat--gaaggaaaataaaaaatattagtc-aagtgaca----gaatccag------------gcc----------cagactgtatgattccattcagatgcctttctag--agagggccacgctaggagcaggaagcagatgggtggctgc-gagcgctgggtctcgggggagaggac
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87648439 401 - 129401213 caaaaacttaatatgtagctaccatatgatgtaacgaccagacttttggttatttacccaaggaaagtgttagc--------ttgtaacttatgataagcaaatattatagtagattcattcacaatagctaaaccgagaaagaa----aaaataaaatcaaaactcccatcaacttgt-aataaactgtgctgcatttgtgtaattcaattcaacacagcagtaaaaaaaggaataaagtgctaatacaattgtgaacatgggtgaatacccaaaacattaggccaggtgaaagaaggaaacaaa------------gtatataaacttgcatgctagatgagcctgtttatacaccattctaggaagaaaggaaaactaagaacaaaaag------AGAAGCTTA--AAGACTGAGCATCCAGGAAGGGAGA
i mm10.chr8                I 1 I 1
s canFam3.chr16             17957725 271 -  59632846 ataaaggttaacatgtagttaccataaaacccagtaatcactctcctgg-tatttgcccaagagaaacgaaaacatatgcacataTACATATTGAT-------------------------------------------------------------------------------------------------------------------------------T--G-------------tactaatacaatcaacaacatggatgaatatcaaaaatagtatgcta-atgaaa----gaaaccaaactcaaaaatataca----------caggatag--gattccatctatatgccattctga--aaaaggcaaaactattaacagaaagcagctcagtggttgcctagggctggatatca-gggagtagat
i canFam3.chr16            C 0 C 0
e rheMac3.chr5             183661173 266 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=171138.000000
s hg38.chr4_KI270925v1_alt    283331  87 +    555799 cgcctgccat----gaggc---agggagaa----------ttgggggtgacggacac------attctg------------catcatgactg-------cggcgatcgtGA-------AGTACGACAAGGATTTGT
s panTro4.chr4             192980798  87 + 193495092 cgcctgccat----gaggc---agggaaaa----------ttgggggtgacggacac------attctg------------catcatgattg-------cggcgatCATGA-------AGTACGATAAGGATTTGt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198064315  94 + 198332218 tgcctgccat----gaggc---agggagaa----------ttgggggtgacagacac------attctg------------catcatgattgtgTGAATCAGCAATTGTGA-------AGTATGATAAGGATTTGt
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183661439  82 + 184069350 CGCCTGCCAT----GAGGC---AGGGAGAA----------GT----GTGACGGGCAC------ATTCTA------------CATCATGATTG-------CGGCGATCGTGA-------AGTACGATAAGGATTTG-
i rheMac3.chr5             I 266 C 0
s macFas5.chr5             189045633  86 + 189454096 cgcctgccat----gaggc---agggagaa----------gcgggggtgaccggcac------attctg------------catcatgattg-------cggcgatcgtGA-------AGTACGATAAGGATTTG-
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178473956  86 + 178775436 CGCCTGCCAT----GAGGC---AGGGAGAA----------GTGGGGGTGACGGGCAC------ATTCTG------------CATCATGATTG-------CGGCAATCGTGA-------AGTACGAtaaggatttt-
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135420071  87 + 135778131 cacctgccat----gaggc---agggagaa----------ttgggggtgacgggcac------attctg------------catcatgattg-------cggcgatcgtGA-------AGTATGATAAGGATTTGt
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190520642  86 - 190850796 cccctgccac----gaggc---acggagaa----------tt-ggggtgagggacac------attctg------------cgtcatgatcg-------cggtgatcgtGA-------AGTATGATTAGAGATTGT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87648841 122 - 129401213 -CTCAGAAATTTAAAAGGT---AATGAAAATGATCCACATTTGGGTTCCACTTGTACTTAAGTATTCTGTTTACCCAAGCTCATCA--ACTT-------AATCACTGGTGAAGCCTTTAGCATCACAAGGGAAAC-
i mm10.chr8                I 1 C 0
s canFam3.chr16             17957996  90 -  59632846 tgactgccaa----gaagcgtaagtgaaat----------ttaggggtgatggaaaa------gttcta------------tatcttgatga-------tggcagtagtta-------agtattacatacatttat
i canFam3.chr16            C 0 I 108
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=452887.000000
s hg38.chr4_KI270925v1_alt    283418 205 +    555799 tttcctcttt--cattgttaggttcataactgagagtcg-aaaacaaa----agattaacaagagaaaggcatacacatttat-------ttaacacaagttatacat--------aacgtgaagacttcacaagtgaaggcctaacaaaacagaaaaacctgtgtatttttatgctaaatttggtgaagaag---tgtata---gtagagaaatatgattggaggccaaaag
s panTro4.chr4             192980885 205 + 193495092 tttcctcttt--cattgttaggttcataactgagagtcg-aaaacaaa----agattaacaagagaaaggcatacatatttat-------ttaacacaagttatacat--------aacgtgaagacttcacaagtgaaggcctaacaaaacagcaaaacctgtgtatttttatgctaaatttggtgaagaag---tgtata---gtagagaaatatgattggaggccaaaag
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198064409 206 + 198332218 tttcctcttt--cattgttaggttcgtaactgagagtcataaaacaaa----agattaacaagagaaaggcatacacatttat-------ttaacacaagttatacat--------aacatgaagacttcacaagtgaaggcctaacaaaacagaaaaacctgtgtatttttatgcaaaatttggtgaagaag---tgtata---gtagagaaatatgattggaggccaaaag
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183661521 210 + 184069350 tttcctcttt--cgttgttaggttcataactgagagtactaaaacaaaagacagactaacgaccgaaaggcatacacatttat-------ttaatacaagtcatacag--------aacgtgaagacttcagaagtgaaggcctaacaagacagaaaaacctgtgtatttttatgcaaaatttggtgaagaag---tgtata---ggagagaaatatgattggagccccaaag
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189045719 210 + 189454096 tttcctcttt--cgttgttaggttcataactgagagtactaaaacaaaagacagactaacgaccgaaaggcatacacatttat-------ttaatacaagttatacag--------aacgtgaagacttcagaagtgaaggcctaacaaaacagaaaaacctgtgtatttttatgcaaaatttggcgaagaag---tgtata---ggagagaaatatgattggagccccaaag
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178474042 210 + 178775436 tttcctcttt--cgtTGTTAGGTTCATAACTGAGAGTACTAAAACAAAAGACAGACTAACGACCGaaaggcatacacatttat-------ttaatacaagTTATACAT--------AACCTGAAGACTTCAGAAGTGAAGGcctaacaaaacagaaaaacctgtgtatttttatgcAGAATTTGGCGAAGAAG---TGTATA---GGAGAGAAATATGATTGGAGCCCCAAAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135420158 210 + 135778131 tttcctcttt--cgttgttaggttcataactgagagtactaaaacaaaaggcagattaatggccaaaaggcatacacatttat-------tcaatacaagttatacat--------aatatgaagacttcagaagtgaaggcccaacaaaacagaacaacctgtgtatttttatgcaaaatttggtgaagacg---tgtata---ggagagaaatatgattggagccccaaag
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190520728 205 - 190850796 TTTCCCCTCT--TGTTGTCaggttcataacttagattcctacaacaaaagacagattaacaagagaaaggcatacacattcat-------ttattgcaagttttacat--------gatgtgaagactttgcaagtgaagacc-----gaacaggaaaccctgtgcatttttatgctaaagttggtaatgaag---ggtgta---gcagggacatatgactggagaccgaaag
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87648963 231 - 129401213 TTTCTTCCTCAGCATTGATGGGTTCATGGCTGAGAGCTCCACACTAAAAGAGAGACAAGCAAGAGAAAGTC-TACAAATCTGCTTTACTATTATCATGAGTTTTACATTCGGGGTGGGGGTGGGGGCTGTAGAAGTTAGCTCTGAGGAAATGTAGGAAACCTTCAT-TCTTTGTATTTCATTTGATGAGGAAGGCTTGAATACTTCTAATAAGGTACACTTAGAGGTCAGTAG
i mm10.chr8                C 0 I 254
e canFam3.chr16             17958086 108 -  59632846 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=107618.000000
s hg38.chr4_KI270925v1_alt    283623 45 +    555799 ccttgatataatagtaataaattgggggaacttgagcaaggcctg
s panTro4.chr4             192981090 45 + 193495092 ccttgatataatagtaataaattggggtaacttgagcaaggcctg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198064615 45 + 198332218 ccttgatataatagtaataaattgggggaacttgagcaaggcctg
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183661731 45 + 184069350 ccttgatataatagtaataaactgggggaaattgagcaaggcctg
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189045929 45 + 189454096 ccttgatataatagtaataaactgggggaaactgagcaaggcctg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178474252 45 + 178775436 CCTTgatataatagtaataaactgGGGGAAATTGAGCAAGGCCTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135420368 45 + 135778131 ccttgatataatagtaataaattgggggaaattgagcaaggccta
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190520933 45 - 190850796 ccttgatacaatagtaataaatggggagaaattgagcaaggcctg
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87649194 254 - 129401213 I
e canFam3.chr16             17958086 108 -  59632846 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=775773.000000
s hg38.chr4_KI270925v1_alt    283668 310 +    555799 tttcttcagattctacttgacagctctgtgtcttgaaggatagagatgttcctttcctag-gacatagggagggcagccctgaagtgaaggttttattatctactttagaggaaggtcagagagttattttatgacctgtttcatgggagac-gagcaaggggaaggtgagagtgacctttctgcatctgccatttccccaagtgccaaggtaacgtattttggggtagtatat-caagaaccccgtcaCCATATGTAAATTATACCTTAATAAACCCTGACTTTAAAATGTTACAATTCATTGTTTAGTCCT
s panTro4.chr4             192981135 307 + 193495092 tttcttcagattctacttgacagctctgtgtcttgaaggatagagatgttcctttcctag-gacatagggagggcagccctgaagtgaaggttttattttctactttagaggaaggtcagag--ttattttatgacctgtttcatgggagac-gagcaaggg-aaggttagagtgacctttctgcatctgccatttccccaagtgccaaggtaacgtattttggggtagtatat-caagaaccccgtcaCCATATGTAAATTATACCTTAATCAACCCTGACTTTAAAATGTTACAATTCATTGTTTAGTCCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198064660 310 + 198332218 tttcttcagattctacttgacatctctgtgtcttgaaggatagagatgttcctttcctag-gacatagggagggcagccctgaagtgaaggttttattatctactttagaggaagatcagagagttattttatgacctgttccatgggagac-aagcaaggggaaggtgagagtgacctttctgcatctgccgtttcctcaaatgccaaggtaacgtattttggggtagtatat-caagaaccccatcaCCATATGTAAATTATACCTTAATCAACCCTGACTTTAAAATGTTACAATTCATTGTTTAGTCCT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183661776 310 + 184069350 tttcttcagattctacttgacatctctgtgtcttgaaggatagaggtgttcctctcccag-ggcatagggagggtagccctgaagtgaaggttccatgatctactttagaggaaggtcagagagttattttatgacctgtttcatgggagac-gagcaaggggaaggagagagtgacctttctgcatctgccgtttcctcaaatgccaaagtaacatattttggagtcgtatat-ccagaaccccgtcaCCATATGTAAATTATACCTCAATCAACCCTGACTTTAAAATGTTACCATTCATTGTTTAGTCCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189045974 310 + 189454096 tttcttcagattctacttgacatctctgtgtcttgaaggatagaggtgttcctctcccag-ggcatagggagggtagccctgaagtgaaggttccatgatctactttagaggaaggtcagagagttattttatgacctgtttcatgggagac-gagcaaggggaaggagagagtgacctttctgcatctgccgtttcctcaaatgccaaagtaacttattttggagtcgtatat-ccagaaccccgtcaCCATATGTAAATCATACCTCAATCAACCCTGACTTTAAAATGTTACCATTCATTGTTTAGTCCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178474297 310 + 178775436 TTTCTTCAGATTCTACTTGACATCTCTGTGTCTTGAAGGATAGAGGTGTTCCTTTCCCAG-GGCATAGGGAGGGTAGCCCTGAAGTGAAGGTTCCATGATCTACTTTAGAGGAAGGTCAGAGAGTTATTTTATGACCTGTTTCATGGGAGAC-gagcaaggggaaggagagagtgaCCTTTCTGCATCTGCCGTTTCCTCAAATGCCAAAGTAACATATTTTGGAGTCGTATAT-CCAGAACCCCGTCaccatatgtaaattatacctcaatcaACCCTGACTTTAAAATGTTACCATTCATTGTTTAATCCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135420413 310 + 135778131 tttcttcagattctacttgacatctctgtgtcttgaaggatagaggtgttcctttcccag-ggcatagggagggtagccctgaagtgaaggtttcatgatctactttagaggaaggtcagagagttattttatgacctgtttcatgggagac-gagcaaggggaaggagagagtgacctttctgcatctgccgtttcctcaaatgccaaagtaacatattttggagtcgtatat-gcagaaccccgtcaCCATATGTAAATTGTACCTCAATCAACCCTGACTTTAAAATGTTACCATTCATTGTTTAGTCCT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190520978 309 - 190850796 tttcttcagattcctcttggaatctctgtgtcttgaaggacgaagatgttcctttcctag-ggtatagggagggtagccctgaagtgaaggtcttatgatctgctttagaggaaggtcagagagttattttatggcctgtttcatgggagatggagcaagaggaaggtgagagtgacctttctgcatctgccgcttcctcagatgccAAGGTCACCTGTTTTGGGGTACTCTAT-CCAGAACCGAGTCGCC-TTTCTGAATCATA-CTTAATCAACCGTGACTTTAAGATACTACAATTCATTGTTTAGTCCT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87649448 289 - 129401213 TTTGTTCAGATTTTTCTTGGCATCCCCATGTGTTCAAGGCTAAGGATGTTTCTTTCCTTGAAGGGTGGGAAGGGCAGCTCTAGCGTGAAGGTTTC-------TCTTTGGATGAAGGTCAGAAAATCCTTTTATTCGTGGTATCAAGGGAGAT-----CCGAGGAAGGTAAGGATGACCCAT-----TCTACTGTTTCCTCAAATGCTAAGG----ATCTTATCTGGCAACAAATGCCAGCAGCTCTT--CCACACATTGGTTAAACCATAATACATCCTGAGTTGAAAA-GTCATAATACAGTATTTAAGCCT
i mm10.chr8                I 254 C 0
e canFam3.chr16             17958086 108 -  59632846 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=1254246.000000
s hg38.chr4_KI270925v1_alt    283978 631 +    555799  
s panTro4.chr4             192981442 630 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198064970 626 + 198332218  
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183662086 623 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189046284 616 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178474607 623 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135420723 628 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190521287 555 - 190850796  
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87649737   0 - 129401213 C
e canFam3.chr16             17958086 108 -  59632846 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=1760590.000000
s hg38.chr4_KI270925v1_alt    284609 693 +    555799  
s panTro4.chr4             192982072 697 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198065596 699 + 198332218  
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183662709 701 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189046900 703 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178475230 701 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135421351 703 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190521842 641 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87649737 708 - 129401213  
i mm10.chr8                C 0 C 0
s canFam3.chr16             17958194 677 -  59632846  
i canFam3.chr16            I 108 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=8352.000000
s hg38.chr4_KI270925v1_alt    285302 3 +    555799 TCT
s panTro4.chr4             192982769 3 + 193495092 TCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198066295 3 + 198332218 TCT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183663410 3 + 184069350 TCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189047603 3 + 189454096 TCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178475931 3 + 178775436 tct
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135422054 3 + 135778131 TCT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190522483 3 - 190850796 TGT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17958871 3 -  59632846 TCT
i canFam3.chr16            C 0 I 299
e mm10.chr8                 87650445 0 - 129401213 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=192156.000000
s hg38.chr4_KI270925v1_alt    285305 133 +    555799 aaagaagaaagagaaaaaagaaggaaggg---------aggaaggaagg-----------------------------------------------------------aaggaaggaatcaaggaa--gaaggaaggaaagaagggaaaga--------------------------gaaagaaaga----------------------gaaaaaagacaaaaagaaaagaaaggagaaagagaaagacga
s panTro4.chr4             192982772 129 + 193495092 AAAGaagaaagagaaaaaagaaggaaggg---------aggaaggaagg-----------------------------------------------------------aaggaa----tcaaggaa--gaaggaagggaagaagggaaaga--------------------------gaaagaaaga----------------------gaaaaaagaccaaaagaaaagaaaggagaaagagaaagatga
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198066298 126 + 198332218 AAAGaagaaagagaaaaaagaaggaaggg---------gggaaggaagg-----------------------------------------------------------aaggaa----tcaaggaa--gaaggaaggaaagaagggaaaga--------------------------gaaagaga-------------------------aaaaaagacaaaaagaaaagaagggagaaagagaaagatga
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183663413 119 + 184069350 aaagaaaaataaagagaaaaaaggaaggg---------agcaaggaagg-----------------------------------------------------------aaggaa----tc---------aaggaaggaaggaagggaaaga--------------------------gaaagaa-------------------------aataaaagacaaaaagaaaagaagggagaaagagaaagatga
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189047606 119 + 189454096 AAAGAAAAATAaagagaaaaaaggaaggg---------agcaaggaagg-----------------------------------------------------------aaggaa----tc---------aaggaaggaaggaagggaaaga--------------------------gaaagaa-------------------------aataaaagacaaaaagaaaagaagggagaaagagaaagatga
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178475934 167 + 178775436 aaagaagaaagagaaaaaaggaggaaggg---------agggaggaaggaaggaaggaaggaagtaagtaagtaagtaagtaagtaagtaagt---------------aaggaa----gg---------aaggaaggaaggaagggaaaga--------------------------gaaagaaaga---------------------taataaaagacaaaaagaaaagaagggagaaagagaaagatga
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135422057 115 + 135778131 aaagaagaaagacaaaaaaggaggaaggg-------------aggaagg-----------------------------------------------------------aagaaa----tc---------aaggaaggaaggaagggaaaga--------------------------gaaagaaaga---------------------taataaaagac----agaaaagaagggagaaagagaaagatga
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190522486 247 - 190850796 AAAGAAGAAAGAGAAAAaagaagggagggagggatgggagggaggaaggaaggaaggaaagaaagaaggaaggaggaaggaagggaaggagggagggagggagggggaaaggga----ggaaagaagggaaggaaggaaggaagggaaggaaggaagggaaggaagggaggaaaggggaaagaaagggagggaagagggaaACagaaacaaaaaaagacgaaaagaaaagaagggagaaagagaaagatga
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87650445   0 - 129401213 C
e canFam3.chr16             17958874 299 -  59632846 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=52064.000000
s hg38.chr4_KI270925v1_alt    285438 30 +    555799 a-------------aagaaagagagaaaaa--gaaagggagaaag
s panTro4.chr4             192982901 32 + 193495092 a-------------aagaaagagagaaaaaaagaaagggagaaag
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198066424 31 + 198332218 a-------------aagagagagaaaaaaa-aaaaagggagaaag
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183663532 38 + 184069350 aa------agaaagaaaagagagagaaaaa-agatagggagaaag
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189047725 38 + 189454096 aa------agaaagaaaagagagagaaaaa-agatagggagaaag
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178476101 35 + 178775436 a---------aaagaaaagagagagaaaaa-agacagggagaaag
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135422172 35 + 135778131 a---------aaagaaaagagagagagaaa-agacagggagaaag
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190522733 43 - 190850796 aatgaaggagaaagaaaaaagagaaaagaG--GAAagggagagag
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17959173 30 -  59632846 --------------aaaaaaataaataaaa-ataaaagaagaaag
i canFam3.chr16            I 299 C 0
e mm10.chr8                 87650445  0 - 129401213 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=1301389.000000
s hg38.chr4_KI270925v1_alt    285468 468 +    555799 ggagtgagggagg-----------gaggGGAAAATCCAGTAAAAAGGAAATGGTTTGCT-CGAGTGGAAAAATATGGCCGCAGATTGTAAAGAATGACCTGAGAGAATTAGTGCTTCTTTG-AAATCTGAACACGGCCTCGCCATATTTCAGAATTAATAGGGAAAAGAGAAACACAGATTCCTGAAACCCCATAATAATTATGTGTATTAC-CATCATTTATGTCCCTGTCCCTGGCAGATTTTAT--AAGAGTTGTTAACAAGTTAAAAGAAGGTGAT-AGCTTTTCACCTGATTCTCTGCTTTGCC-------------TACACAAAATAGATCATGTATTTTCCTCAAAGCCAAAGTTCCTTCTTGACTGTGCTATTTCTGTCAACTACATGCTTATAAAACATGGAGT--CATC--TGACTCTTCCCATCT--GAATCCCAGCATGCAGTCAGCT-CCCAGCCCTCCTCTAGGGATGCCTC-ACACAGCCACCCCGACACC
s panTro4.chr4             192982933 468 + 193495092 GGAGTGAGGGAGG-----------GAGGGAAAAACCCAGTAAAAAGGAAATGGTTTGCT-CTAGTGGAAAAATATGGCCGCAGATTGTAAAGAATGACCTGAGAGATTTAGTGCTTCTTTG-AAATCTGAACACAGCCTCGCCATATTTCAGAATTAATAGGGGAAAGAGAAACACAGATTCCTGAAACCCCATAATAATTATGTGTATTAC-CATCATTTATGTCCCTGTCCCTGGCAGATTTTAT--AAGAGTTGTTAACAAGTTAAAAGAAGGTGAT-AGCTTTTCACCTGATTCTCTGCTTTGCC-------------TACACAAAATAGATCATGTATTTTCCTCAAAGCCAAAGTTCCTTCTTGACTGTGCTATTTCTGTCAACTACATGTTTATAAAACATGGAGT--CATC--TGACTCTTCCCATCT--GAATCCCAGCATGCAGTCAGCT-CCCAGCCCTCCTCTAGGGATGCCTC-ACACAGCCACCCCGACACC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198066455 469 + 198332218 GGAGTGAGGGAGG-----------GAAGGAAAAATCCAGTAAAAAGGAAATGGTTTGCT-CGAGTGGAAAAATATGGCTGCAGATTGTAAAGAATGACCCGAGAGAATTAGTGCTTCTTTGAAAATCTGAACACAGCCTCCCCATATTTCAGAATTAATAGGGAAAAGAGAAACACAGATACCTGAAACCCCATAATAATTACATGTATGAC-CATCATTTATGTCCCTGTCCCTGGCAGATTTTAT--AAGCGTTGTTAACAAGTTAAAAGAAGGTGAT-AGCTTTTCACCTGATTCTCTGCTTTGCC-------------TACACAAAATAGATGATGTATTTTCCTCAAAGCCAAAGTTCCTTCTTGACTGTGCTATTTCTGTCAACTACATGCTTATAAAACATGGAGT--CATC--TGACTCTTCCCATCT--GAATCCCAGCATGCAGTCAGCT-CCCAGCCCTCCTCTAGGGATGCCTC-ATGCAGCCACCCCGACACC
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183663570 465 + 184069350 ggagggagggagg---------------aaaaaaTCCAGCAAAAAGGAAGTGGTTTGCT-CTAGTGGAAAAATATGGCCCCAGATTGTAAAGAATGACCTGAGAGAATTAATGCTTCTTTAAAAATCTGAACACAGCCTCGCCATATTTCAGAATTAATAGGGAAAAGAGAAACACGGATGCCTGAAACCCTATAATAATTATGTGTCTTAC-CGTCATTTATGTCCCAGTCCCTGGCAGATTTTGT--AAGAGTTGTTAGCAAGTTAAAAGAAGATGAT-GGCTTTTCACCTGATTCTCTGCTTTGCC-------------TACAGAAAATAGATCAGGTATTTTCCTCAAAGCCAAAGTTCCTTCTTGACTGTGCTATTTCTGTCAACCACATACTGATAAAGCATGGAGT--CATC--TGATTCTTCCCATCT--GAATCCCAGCATGCAGTCGGCT-CCCAGCCCTCCTCTAGGGACGCCTC-ACACAGCCATCCCAACACT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189047763 465 + 189454096 ggagggagggagg---------------aaAAAATCCAGCAAAAAGGAAGTGGTTTGCT-CTAGTGGAAAAATATGGCCCCAGATTGTAAAGAATGACCTGAGAGAATTAATGCTTCTTTAAAAATCTGAACACAGCCTCGCCATATTTCAGAATTAATAGGGAAAAGAGAAACACGGATGCCTGAAACCCTATAATAATTATGTGTCTTAC-CGTCATTTATGTCCCAGTCCCTGGCAGATTTTGT--AAGAGTTGTTAGCAAGTTAAAAGAAGATGAT-GGCTTTTCACCTGATTCTCTGCTTTGCC-------------TACAGAAAATAGATCAGGTATTTTCCTCAAAGCCAAAGTTCCTTCTTGACTGTGCTATTTCTGTCAACCACATACTGATAAAGCATGGAGT--CATC--TGATTCTTCCCATCT--GAATCCCAGCATGCAGTCGGCT-CCCAGCCCTCCTCTAGGGACGCCTC-ACACAGCCATCCCAACACT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178476136 466 + 178775436 ggagggagggagg----------gaggaaaaaaatccagcaaaa--gaaaTGGTTTGCT-CGAGTGGAAAAATATGGCCCCAGATTGTAAAGAATGACCTGAGAGAATTAATGCTTCTTTGAAAATCTGAACACAGCCTCGCCATATTTCAGAATTAATAGGGAAAAGAGAAACACGGATACCTGAAACCCTATAATAATTATGTGTCTTAC-CGTCATTTATGTCTCAGTCCCTGGCAGATTTTAT--AAGAGTTGTTAGCAAGTTAAAAGAAGGTGAT-GGCCTTTCACCTGATTCTCTGCTTTGCC-------------TACAGAAAATAGATCAGGTATTTTCCTCAAAGCCAAAGTTCCTTCTTGAC--TGCTATTTCTGTCAACCACATGCTTATAAAACATGGAGT--CATC--TGATTCTTCCCATCT--GAATCCCAGCGTGCAGTCGGCT-CCCAGCCCTCCTCTATGGACGCCTC-ACACAGCCACCCCAACACT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135422207 464 + 135778131 ggagggagggagg--------------aaAAAAATCCAGCAAAA--GAAATGGTTTGCT-CGAGTGGAAAAATTTAGCCCCAGATTGTAAAGAATGACCTGAGAGAATTAATGCTTCTTTGAAAATCTGAACACAGCCTCGCCATATTTCAGAATTAATAGGGAAAAGAGAAACACGGATACCTGAAACCCTATAATAATTATGTGTCTTAC-CATCATTTATGTCTCAGTCCCTGGCAGATTTTGT--AAGAGTTGTTAACAAGTTAAAAGAAGGTGAT-GGCTTTTCACCTGATTCTCTGCTTTGCC-------------TACAGAAAACAGATCAGGTATTTTCCTCAAAGCCAAAGTTCCTTCTTGACTGTGCTATTTCTGTCAACCACATGCTTATGAAACATGGAGT--CATC--TGATTCTTCCCATCT--GAATCCCAGCGTGCAGTCGGCT-CCCAGCCCTCCTCTAGGGACGCCTC-ACACAGCCATCCCAACACT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190522776 481 - 190850796 ggagggaggcaggaaaggagggagggagggaAAATCCAGCCAGAAGGAAATTCTTTGCT-TAAGTGCAAAAATATGGCTGCAGATTGTAAAGAATGACCTGAGAGAATTAATGCTTCTTTGAAAATCTGAACACAGCCTCTCTATATTTCAGAATTATTAGGGAAAAGAGAAACACAGATACCAGAAACCCCATAATAACTGTGCGTCTTACTCATCATTTATGTCCCTGTCACGGGCAGATTTTAT--AAGAGTTATTAGCAAGTTAAACCAAGGCGATAGGCTTTTCATCTGATTTTCTGCTTTGCC-------------TACGCAAAACAGATGACATATTTTCCTCAAAGCCCAAGTTCCTTCTTTACTGTGCTATTTCTGTCAACTATATGCTTACAAAACATGGTGT--CATC--TGACTCTTCCCACCC--GAATCCCAGTGTGCAGGCAGCT-CCCAGCCCTCCTCTGGGGGTGCCTC-ACAC-GCCACTCCGACACC
i calJac3.chr3             C 0 I 429
s mm10.chr8                 87650445 453 - 129401213 AGGGTGAGAGAGC----------------------TCAGAAAGAAGGAAATGGTTTGCTCCAAATGGAAAAAGAGAGCTACAATTTATAAACAAAAGCCCAAGAGAATCCAAGCTACCCTGAAAATCTGAACA--GACCCACGATGTTTCAGAATTAGTAAGGGAAGG----CCATGGATACCTGAAGCTTAGTCACAATGGTGTGTC--AC-CATCTCTCATGTCCCTGTCCCTAACACATCGCATAAAAGAGTTATTAGCAAGTTAAAGTAATA-----TGCTTTTCACTTATTTTTTTCCTTTGCCACCCCACTCCCAACACACCAAA-GGATCATTTATTTTCCTCAATGTCAACTTTTCTTCCTGAC--TGTCTTTTTTTCCAATT--ATGATTATTCAAGGTGTGGT-GCATCCTTGTCTCTTCACACAT-CAAATCCTAATATAAACTCATTC-ACTAGACCCC--------ATACCTT-ATAACAGCGCCTCACCATT
i mm10.chr8                C 0 I 4
s canFam3.chr16             17959203 451 -  59632846 -----------------------aaaaggaaagacatgggaagaaggaaaTGTTTTGTTCCAAGTGGAAAAACATTGCTGTAGATTCTAAATAATGGCCTGAGAGAATTCATGCTTCTCTGAAATTCTGAACATAGCTTCCCTATATTTCAGGATTTAAAGGGAAAAAAGGAACACAGAGACCTGAAACCCTATAATAATGATGTATCTTAG-CAT--TTCACACCCCTATCCCTGACAGATTTTGA------GCTATTAGCAACTTAAAATAAGGTGATATGCTTCTCATCTCATTCTTTCCTTTGCC-------------CACATAAAACAGATTATTTGTTTGCCTCAAAACCAACTTTCCTTCTTGACTATCCTATTTCTGCC-----TATGATTATTTAAAGTGGTGTAACCTC--TGACTCTTCCCACACACAAATCCCGATGTACAATCAGCTACTCAACCCTTCCCTAGGAATGTTTCTATAT---CACCCTTATGCC
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=10941.000000
s hg38.chr4_KI270925v1_alt    285936 10 +    555799 CTCCTTGCGG
s panTro4.chr4             192983401 10 + 193495092 CTTCTTGCGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198066924 10 + 198332218 CTCCTTGCGG
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183664035 10 + 184069350 CCCCTTGCAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189048228 10 + 189454096 CCCCTTGCAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178476602 10 + 178775436 CTCCTTGCAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135422671 10 + 135778131 CTCCTTGCAG
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87650902  8 - 129401213 GATTTTGA--
i mm10.chr8                I 4 C 0
s canFam3.chr16             17959654 10 -  59632846 TTCATCACTC
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190523257 429 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=962024.000000
s hg38.chr4_KI270925v1_alt    285946 353 +    555799 TTCACCCAGGATAATGCCACCCACTCTCCTTTAGCTTCCCTGTCTCAAG-TTTTTGT----CTCAGTCCATCTAACTTCTATTTCTAATGTAATT-CTTTATTACAAAA-ATAA-TTTGTGCAGATCAGTCTCCTCCAGAA-AAACCTCCAATGGCTCTTTACTCCTGCCAAAGGTTAAAACCTATTTAACAGGTCAAAAATT-ACAACACTTCAAAACGCAACTCACTATCGCCACAATTTTGCTGC-TGTTCACCTAAATTAACCCTCTAGTTCAAACTAGCTTATTC---TCTCGAGAACGTGCTGTG-TTCGTTACCTGACACGAACCTTTGGAAAGTGATTTTTGGTGGGAAAGATATG-CTCA
s panTro4.chr4             192983411 353 + 193495092 TTCACCCAGGATAATGCCACCCACTCTCCTTTAGCTTCCCTGTCTCAAG-TTTTTGT----CTCAGTCCATCTAACTTCTATTTCTAATGTAATT-CTTTATTACAAAA-ATAA-TTTGTGCAGGTCAGTCTCCTCCAGAA-AAACCTCCAATGGCTCTTTACTCCTGCCAAAGGTTAAAACCTATTTAACAGGTCAAAAATT-ACAACACTTCAAAACGCAACTCACTATCGCCACAATTTTGCCAC-TGTTCACCTAAATTAACCCTCTAATTCAAACTAGCTTATTC---TCTTGAGAACGTGCTATG-TTCGTTACCTGACACGAACCTTTGGAAAGTGATTTTTGGTGGGAAAGATATG-CTCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198066934 359 + 198332218 TTCACCCAGGACAATGCCACCCTCTCTCATTTGGCTTCCCTGCCTCAAGTTTTTTGTCTCACTCAGTCCATCTAACTTCTATTTCTAATGTAATT-ATTTATTACAAAA-ATAATTTTGTGCAGGTCTGTCTCCTCCAGAA-AAACCTCCAATGGCTCTTTACTCCTGACAAACATTAAAACCTATTTAACAGGTCAAAAATT-ACAACACTTCAAAACGCAACTCACTATTGCCAAAATTTTGCCAC-TATTCACCTAAATTAACCCTCTAGTTCAAACTAGCTTATTC---TCTCGAGAACGTGCTGTG-TTAGTTACCTGACACGAACCTTTGGAAAGAGATTTTTGGTGGGAAAGATATG-CTCA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183664045 358 + 184069350 TTCGCCCAGGAAAATGCCACCCTCTCTCATTTGGCTTCCCTGCCTCAAGTTTTTTGTCTCACTCAGTCCATCTAACTTCCATTTCTAATGTAATT-CTTTATTACAAAA-ATAA-TTTGTGCAGGTCAGTCTTCTCTAGAG-AAACCTCCGATGGCTCCTTACAAATGCTGAAGGTTAAAACCTGTTTAACAGGTCAAAAATT-CTAACACTTCAAAACGCAACTCACGATCGCCAAAATTTTGCCAC-TATTCACCTAAATTAACCCTCTAGTTCAAACTAGCTTATTC---TCTCAAGAACGTGCTGTG-TTGGTTACCTGACATGAACCTTTGGAAAGAGATTTTTGGTGGGAAAAATATG-CTCA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189048238 358 + 189454096 TTCACCCAGGAAAATGCCACCCTCTCTCATTTAGCTTCCCTGCCTCAAGTTTTTTGTCTCACTCAGTCCATCTAACTTCCATTTCTAATGTAATT-CTTTATTACAAAA-ATAA-TTTGTGCAGGTCAGTCTTCTCCAGAG-AAACCTCCGATGGCTCCTTACTACTGCCGAAGATTAAAACCTGTTTAACAGGTCAAAAATT-CTAACACTTCAAAACGCAACTCACGATCGCCAAAATTTTGCCAC-TATTCACCTAAATTAACCCTCTAGTTCAAACTAGCTTATTC---TCTCAAGAACGTGCTGTG-TTGGTTACCTGACATGAACCTTTGGAAAGAGATTTTTGGTGGGAAAAATATG-CTCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178476612 358 + 178775436 TTCACCCAGGAAAATGCCACCCTCTCTCATTTGGCTTCCCTGCCTCAAGTTTTTTGTCTCACTCAGTCCATCTAACTTCCATTTCTAATGTAAtt-ctttattacaaaa-ataa-tttgtgcAGGTCAGTCTTCTCCAAAG-AAACCGCCGATGGTTCCTTACTACTGCCGAAGATTAAAACCTGTTCAACAGGTCAAAAATT-CTAACACTTCAAAACGCAACTCACGATCGCCAAAATTTTGCCAC-TATTCACCTAAATTAACCCTCTAGTTCAAACTAGCTTATTC---TCTCAAGAACGTGCTGTG-TTGGTTACCTGACGTGAACCTTTGGAAAGAGGTTTTTGGTGGGAAAAATATG-CTCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135422681 358 + 135778131 TTCACCCAGGAAAATGCCACCCTCTCTCATTTGGCTTCCCTGCCTCAAGTTTTTTGTCTCACTCAGTCTATCTAACTTCCATTTCTAATGTAATT-CTTTATTACAAAA-ATAA-TTTGTGCAGGTCAGTCTTCTCCAGAG-AAACCTCCGATGGTTCCTTACTACTGCCGAAGATTAAAACCTGTTTAACAGGTCAAAAATT-ATAACACTTCAGAACACAATTCACGATCGCCAAAATTTTGCCAC-TATTCACCTAAATTAACCCTCTAGTTCAAACTAGCTTATTC---TCTCAAGAACGTGCTGTG-TTGGTTACCTGATTTGAACCTTTGGAAAGAGATTTTTGGTGGGAAAAATGTG-CTCT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190523686 353 - 190850796 TTCGCCCAGGACAAGG-CACCATCTCTCATTTGGCTTCCCTGCCTCAAGGTTTTTGTCTCACTCGGTCCATGTAACTTCCACTTCTAATGTAATTCCTTTTTTAAAAAA-ATAA-TTTGTGTGCTTCAGTCTCCCCCAGGA-AAACCTCCAGTGGCTCTTTACTACAGCTGAAAATTAAAACCGATTTAACAAGTCAAAAATT-ATAACACTTAAAAACGCAACT----ATCTCCAAAATGTTGCCAC-TATTCACCTAAATTAACCCT-TAGTTCAAACCTCATTATTC---TCTCAAGAGTGTGCTGTG-TTTGTTACCTGATATGAACCTTTGGAAAGAGATTGTTGGTGGGAAAAAAGTG-TTCA
i calJac3.chr3             I 429 I 1260
s mm10.chr8                 87650910 345 - 129401213 CTTCCCCAGGCTGATACCATCCAATCCCATTTGCCTTCAATACCTCAAGTTTTCAAC----TTCATTCCAACT-ATGGCTGCTTCTAATGCAATC-CTTTTTCACAAAACATAA-TTTGCATGTGTCAATCTCCTACAAAATAAACCTCAGGTGGTTCCTTAC---TGCCAAAGGTCAAAACACGTTTAACAAATCAACACTT-GCAATGTGTTAAAATGTACCTCATTCTCTCTAAAGTTTTGCCAC-TATTGACCTAAATTAGTCCCATC-TTCAAACAAGCTAATTCTTTTCTTAAGAATATAGTGTGTTTCATTATTTCCCATGCTCCTTTGAAA---------TGGCTGAACAGAGA-G-CTCA
i mm10.chr8                C 0 C 0
s canFam3.chr16             17959664 341 -  59632846 TTCACCCAGACCTGTGCTGCACA-TCTCATTTGGCTTCAACACCTCACAGTCTTA--CTCACTCAGTCCACCCAACCACCGTTTGCAATGTAATC-CACTTTCACAAAG-ATAA-CGTGTGTGGGTCATTCTCCTGTGGAA-AAAATTCTAATGGGCCCCAAC---TGTCAAAGGTCAAAA--TATTTAACTGATCAAAACCTAACAACACTTCAAAAGATGATCTACTATCTCCAAAATTCTACCACTTGTTCACCTAAATTAACCCTCTATTCCAAACTACCCAATTCTTCTCTTTAGAACATGCTATA-TCCATTAC--------AAATTT-------AGATTTTTGCTGAGAAACAAGGGCCTCA
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=3600.000000
s hg38.chr4_KI270925v1_alt    286299 1 +    555799 G
s panTro4.chr4             192983764 1 + 193495092 G
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198067293 1 + 198332218 G
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183664403 1 + 184069350 G
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189048596 1 + 189454096 G
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178476970 1 + 178775436 G
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135423039 1 + 135778131 G
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87651255 1 - 129401213 G
i mm10.chr8                C 0 C 0
s canFam3.chr16             17960005 1 -  59632846 G
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190524039 1260 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=647428.000000
s hg38.chr4_KI270925v1_alt    286300 282 +    555799 AAAAAAGTTGGCTGAACTTATT---AAGGATGTCCTCCCTGAAGATTTTCAGTATGTGGGGACTTCCCATTCCTCAGTGCAAGGCTGCAGGTGCTCGTGCCAGGCTAAGCCTG--TCCAGCC-CCAC-GCTCAAAGCACTCT----CTCTCCTCAAC---CGCGGCATTCATCTGCACCATTCTTTTAGAAATTAACATCTGTAATGGCCCA-CATTTGAgtgtgtgtgtgtgt-gtgtgtgtgtgtACACAT-------------------CAATATATGTAGAAATATGTAGGTTATTAAATATATATTTACATT
s panTro4.chr4             192983765 282 + 193495092 AAAAAAGTTGGCTGAACTTATT---AAGGATGTCCTCCCTGAAGATTTTCAGTCTGTGGGGACTTCCCATTCCTCAGTGCAAGGCTGCAAGTGCTCGTGCCAGGCTAAGCCTG--TCCAGCC-CCAA-TCTCAAAGCAGCAA----ATCTCCTCAAT---CGCGGCATTTGTCTGCACCATTCTTTTAGAAATTAACATCTGTAATGGCCCA-CATTTGAgtgtgtgtgtgtgt-gtgtgtgtgtgtACACAT-------------------CAATATATGTAGAAATATGTAGGTTATTAAATATATATTTACATT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198067294 276 + 198332218 AAAAAAGTTGGCTGAACTTATT---AAGGATGTCCTCCCTGAAGCTTTTCAGTATGTGGGGACTTCCCATTCCTCAGTGCAAGGCTGCAGGTGCTCGTGCTGGGCTAAGCCCG--TCTAGCC-CCAC-ACTCAAAGCAGTCT----CTCTCCTCAAC---CGCAGCATTTGTCTGCAACATTCTTTTAGAAATTAACATCTGTAATGGCCCA-CATTTGA------GTGTGTGT-GTGTGTGTGCGCACACAT-------------------CAATATATGTAGAAATATGTAGGTTATTAATTATATATTTACATT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183664404 280 + 184069350 -AAAAAGTTGACTGAACTTATT---AAGGATGTCCTCCCTGAAACTTTTCAGTATGTGGGGACTTCCCATTCCTCAGTGCAAGGCTGCAGGTGCCCGTGCTGGGCTAAGCCTG--TCCAGCC-CCAC-ACTCAAAGCACTCT----CTCTCCTCAAC---CGCGGCATTAGTCTGCACCATTCTTTTAGAATTTAACATCTGTTGTGGCCCA--ATTTGAgtgtgtgtgtgtgt-gtgtgtgtgtATACACAT-------------------CAATATATGTAGAAATATGTAGGTTATTAAATATATAGTTACATT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189048597 276 + 189454096 -AAAAAGTTGACTGAACTTATT---AAGGATGTCCTCCCTGAAACTTTTCAGTATGTGGGGACTTCCCATTCCTCAGTGCAAGGCTGCAGGTGCCCGTGCTGGGCTAAGCCTG--TCCAGCC-CCAC-ACTCAAAGCACTCT----CTCTCCTCAAC---CGCGGCATTAGTCTGCACCATTCTTTTAGAATTTAACATCTGTTGTGGCCCA--ATTtga----gtgtgtgtgt-gtgtgtgtgtATACACAT-------------------CAATATATGTAGAAATATGTAGGTTATTAAATATATAGTTACATT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178476971 278 + 178775436 -AAAAAGTTGGCTGAACTTATT---AAGGATGTCCTCCCTGAAACTTTTCAGTATGTGGGGACTTGCCATTCCTCAGTGCAAGGCTGCAGGTGCCCATGCTGGGCTATGCCTG--TCCAGCC-CCAC-ACTCAAAGCACTCT----CTCTCCTCAAC---CGCGGCATTAATCTGCACCATTCTTTTAGAATTTAACATCTGTTGTGGCCCa--acttga--gtgtgtgtgtgt-gtgtgtgtgtatacacat-------------------caATATATGTAGAAATGTGTAggttattaaatatgtatttacatt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135423040 272 + 135778131 -AAAAAGTTG--TGAACTTATT---ACGGATGTCCTCCCTGAAACTATTCAGTATGTGGGGACTTCCCATTCCTCAGTGCAAGGCTGCAGGTGCCCATGCTGGGCTAAGCCTG--TCCAGCC-CCAC-ACTCAAAGCACTCT----CTCTCCTCAAC---CGTGGCACTAATCTGCACCATTCTTTTAGAATTTAACATCTGTTGTGGCCCA--ATTtga------gtgtgtgt-gtgtgtgtgtATACACAT-------------------CAATATATGTATAAATATGTAGGTTATTAAATATGTATTTACATT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190525299 255 - 190850796 AAAAACGTTGGCCAGACTTATT---AAGGATGTCCTCCCTGAAGCTTTTCGGTATGTGAGGACTTCCCGTTCCTCAGTGC-AGGCTGCAGGTCCCC-----------AGCTGG--CTAAGCC-CCAT-GCTCAAAGCACTCT----CCCTCCTCAAC---CGTGGCATTAGTCAGCACCATGCTTTTAAGATTTAACA--TGTTACGGCCAC--ATTTGA------------GT-GTGTGTGTGTATACACAT-------------------CAACATATGTAGGGACATGTAGGTTATTCAACATACATTTACACT
i calJac3.chr3             I 1260 C 0
s mm10.chr8                 87651256 242 - 129401213 AAACAAGTTGGCTGACCTT----------------------------TTCATCCTGTGGGAACTT--CATTTCTCCATGCTAAGCTAAAATCCCCTGCAATTGGTAAGGGTTGGCTTCAGCT-TC------CACAGTTCTCATAAGCTAGTCTAAAC--------AACTTATGTGCATCATTTTCTTGGAACGTAACACATGTAATGACCCATCATTTGT------GAGTGTGCAATGTCTGTGTATA------------------------CAATGTAAATAGGCAAATGCAGATTATTAGATACACATTTACATT
i mm10.chr8                C 0 I 880
s canFam3.chr16             17960006 299 -  59632846 AAACTATTTGGCTGAACTTCTTTTAAGAAACATCCTCC--AAATTCTTTTTTCTCTTGGGAACTTCTCATTCCTCAGTGCTGAGTTTAAATCTCATGTACTTGATTAGGCCTA-TTCTAGCCTCCACGGCCCTGAGTGAACC----CTCTCTCTAACTAGTGTGGCACATGTCTGTACCATTCCTCTAGAACATAGTATATGTCATGGTCTATCATCCCT-------TGTGTAT-GTGtataaaacaatatatgaaaaaaattaaaaaatgaaaatatatGCAGAAATATGGAG---ATTAAATATATACACATATA
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=15895.000000
s hg38.chr4_KI270925v1_alt    286582 6 +    555799 ATGTGt
s panTro4.chr4             192984047 6 + 193495092 ATATGt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198067570 6 + 198332218 ATATGt
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183664684 6 + 184069350 ATGTGt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189048873 6 + 189454096 ATGTGt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178477249 6 + 178775436 atGTGT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135423312 6 + 135778131 ATGTGt
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190525554 6 - 190850796 GTGTGT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17960305 6 -  59632846 ATATAT
i canFam3.chr16            C 0 I 2
e mm10.chr8                 87651498 880 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=358178.000000
s hg38.chr4_KI270925v1_alt    286588 167 +    555799 gaagcagcatcattgtcagtggtaagtaccaggggttcatcctcttgtgctgagaaaattaaggacatgaacacatgtgggtgggttaaggagtagaaagtttaataggcagaagaaaggagagaggagagcagctccttgtgagagagaggtgtcagaaaggggga
s panTro4.chr4             192984053 167 + 193495092 gaagcagcatcattgtcagtggtaagtaccaggggttcatcctcttgtgctgagaaaattaaggacatgaacacatgtgggtgggttaaggagtggaaagtttaataggcagaagaaaggagagaggagagcagctccttgtgagagagaggtgtcagaaaggggga
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198067576 167 + 198332218 gaagcagcatcattgtcagtggtaagtaccaggggttcatcctcttgtgctgagaaaattaaggacatgaacacatgtgggtgagctaaggagtggaaagtttaataggcagaagaaaggagagaggagagcagctccttgtaagagagaggtgtcagaaaggggga
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183664690 167 + 184069350 gaagtaacgtcattgtcagtggtaaataccaggggttcatcctctcatgctgagaaaattaaggacacgaacacatgtgggtgggttaaggagtggaaagttcaataggcagaagaaaggagagaggagagccgctccttgtgagagagaggtgtcctaaaggggga
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189048879 167 + 189454096 gaagtaacgtcattgtcagtggtaaataccaggggttcatcctctcatgctgagaaaattaaggacacgaacacatgtgggtgggttaaggagtggaaagttcaataggcagaagaaaggagagaggagagccgctccttgtgagagagaggtgtcctaaaggggga
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178477255 165 + 178775436 GAAGCAACATCATTGTCAGTGGTAAATACCAGGGGTTCATCCTCTCATGCTGAGAAAATTAAGGACACGAACACATGTGGGTGGGT--AGGAGTGGAAAGTTCaataggcagaagaaaggagagaggagagccgCTCCTTGTGAGAGAGAGGTGTCCTAAAGGGGGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135423318 167 + 135778131 gaagcaacgtctttgtcagtggtaaataccaggggttcattctcttgtgctgagaaaattaaggacacgaacacatgtgggtgggttaaggagtggaaagttcaataggcagaagaaaggagagaggagagccgctccttgtgagagagaggtgtcctaaaggggga
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190525560 154 - 190850796 GATGCAG---cattgccaggggtaa-taccaggcactcaccctcttgtgcggaggaaatgaagcacacaaacgcatgtgggtgtgttagg-----gaaagtgtaataggcagaagaagggagagag--gagcagctcttggc--gagaggtgtgtccgaAACAGGGA
i calJac3.chr3             C 0 I 65
e mm10.chr8                 87651498 880 - 129401213 I
e canFam3.chr16             17960311   2 -  59632846 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=846641.000000
s hg38.chr4_KI270925v1_alt    286755 492 +    555799 cagtgtcagaccacagcagagtttataggcaggcttgaggagatggtgtctgctttcccaagggctcatggattggcttgaccaggtgggacgtttacatagcaggcgggaaaggctggtagtcccaccctaatcttattatgcaaatggactttccacttgaccttcaccatcttgtctgctccttacaatacagtggctggcaaaaagagaaaatggagccaccactttgaacatgcctagcccaggtagtacattactatgggcacaattgctgacattcacccatgcaagctttcagcttgcttgtttatgtctgtagcttgattttacaggctgctctttgttagaaaaataatgatttgggggccacttttgattaaaaggaaaactttactgaggacttctgta-ccctcactaactgactaagtaatttcttttcaactcctatatcaTATGCACTtgtgatgctgtgaaatatatatttgacct
s panTro4.chr4             192984220 492 + 193495092 cagtgtcagaccacagcagagtttataggcaggcttgaggaggtggtgtctgctttccctagggctcatggattggcttgaccaggtgggacatttacatagcaggcggggaaggctggtagtcccaccctaatcttattatgcaaatggactttccacttgaccttcaccgtcttgtctgctccttacaatagagtggctggcaaaaagagaaaatggagccaccactttgaacatgcctagcccaggtagtacattactatgggcacaattgctggcattcacccatgcaagctttcagcttgcttgtttatgtctgtagcttgattttacaggctgctctttgttagaaaaataatgatttgggggccacttttgattaaaaggaaaactttactgaggacttctgta-ccctcactaactgactaagtactttcttttcaactcctatatcaTATGCACTtgtgatgctgtgaaatatatatttggcct
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198067743 487 + 198332218 cagtgtcagaccacagcagattttataggcaggcttgaggaggtggtgtctgctttccacggggttcatggattggcttgaccaggtgggacgtttacatagcaggcggggaaggctggtagtcccaccctaatcttattatgcaaatggactttccacttgaccgtcaccatcctgtctgctccttacaatacagtggctggcaaaaagagaaaatggagccaccactttgaacatgcctagcccaggtagtacattactatgggcacaattgctggcattcacccatgcaggctttcagcttgcttgtttatgtctgcagcttgattttacaggctgccttttgttagaaaaataatgattttggggccacttttgtttaaaaggaaaactttaccgaggacttctgta-ccctcacta----actaagtaatttcttttcaactcctatatcaTATGCAC-tgtgatgctgtgaaatatatatttgacct
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183664857 484 + 184069350 cagtgtcagaccacagcagattttataggcaggcttgaggaggtggtgtctgctttccatagggcacatggattggcttgactaggtgtgacatttacataacaggcggggaaggcaggtagtcccaccctaatcttattactgaaataggctttccacttgaccttcaccatcttgtctgctccttactgtacagtggctcgcaaaa--agaaaatggagccaccacattgaacatgcctagtccaggtagcacattactatgggcacaattgctggcagttacccatgcaagctttcagcttccttgcttatgtctgcagcttgattttacaggctgctctttgttagaaaaataatgatttgggggctgcttttcattaaaaggaaaactttaccaaggacttctgta-ccct--gta----tctaagtaatttcttttcaactcctatgtcaTATGTACTtgtgatgctgtgaaatatatatttggtat
i rheMac3.chr5             C 0 I 56
s macFas5.chr5             189049046 484 + 189454096 cagtgtcagaccacagcagattttataggcaggcttgaggaggtggtgtctgctttccatagggcacatggattggcttgactaggtgtgacatttacataacaggcggggaaggcaggtagtcccaccctaatcttattactgaaataggctttccacttgaccttcaccatcttgtctgctccttactgtacagtggctcgcaaaa--agaaaatggagccaccaccttgaacatgcctagtccaggtagcacattactatgggcacaattgctggcagttacccatgcaagctttcagcttccttgcttatgtctgcagcttgattttacaggctgctctttgttagaaaaataatgatttgggggctgcttttcattaaaaggaaaactttaccgaggacttctgta-ccct--gta----tctaagtaatttcttttcaactcctatgtcaTATGTACTtgtgatgctgtgaaatatatatttggtat
i macFas5.chr5             C 0 I 17
s papAnu2.chr5             178477420 483 + 178775436 CGGTGTCAGACCACAGcagattttataggcaggcttgaggaggtggtgtctgctTTCCATAGGGCACATGGATTGGCTTGACTAGGTGTGACATTTATGTAACAGACGGGGAAGGCAGGTAgtcccaccctaatcttattactGAAATAGGCTTTCCACTTGACCTtcaccatcttgtctgctccttactgtacagtGGCTCGCAAAA--AGAAAATGGAGCCACCACCTTGAACATGCCTAGTCCAAGTAGTACATTACTATGGGCACAATTGCTGGCAGTTACCCATGCAAGCTTTCAGCTTCCTTGTttatgtctgcagcttgattttacaggctgctgtttgttagaaaaataatgattt-ggggctgcttttcatttaaAGGAAAACTTTACCGAGGACTTCTGTA-CCCT--GTA----TCTAAGTAATTTCTTTTCAACTCCTATGTCATATGTACTTATGAtgctgtgaaatatatatttggtat
i papAnu2.chr5             C 0 I 17
s chlSab2.chr7             135423485 487 + 135778131 cggtgtcagaccacagcagattttataggcaggcttgaggaggtggtgtctgctttccgtagggcacatggattggcttgactaggtgtgacatttacgtaacaggcggggaaggcaggtagtcccaccctaatcttattactgaaataggctttccacttgaccttcaccatcttgtctgctccttactgtacagtggctcgcaaaaagagaaaatggagccaccaccttgaacatgcctagtccaggtagtacattactatgggcacaattgctggcagttacccatgcaagctttcagcttccttgtttatgtctgcagcttgattttacaggctgctgtttgttagaaaaataatgattagggggctgcttttcattaaaaggaaaactttaccgaggacttctgtagccct--gta----tctaagtaatttcttttcaactcctatgtcaTATGTACTtgtgatgctgtgaaatatatatttggtat
i chlSab2.chr7             C 0 I 56
e mm10.chr8                 87651498 880 - 129401213 I
e canFam3.chr16             17960311   2 -  59632846 I
e calJac3.chr3             190525714  65 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=35208.000000
s hg38.chr4_KI270925v1_alt    287247 54 +    555799 tccttctgctttccccctgcctgagatacaactcctaatgtccttggaatctct
s panTro4.chr4             192984712 54 + 193495092 tccttctgttttccccctgcctgagatacaactcctaatgtccttagaatctct
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198068230 54 + 198332218 tccttctgttttccccctgcctgagatacaactcctaatgtccttggaatctct
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189049547 38 + 189454096 ----------------ctgcctgacatacaactcccaatgtccttggaatctct
i macFas5.chr5             I 17 I 1
s papAnu2.chr5             178477920 38 + 178775436 ----------------CTGCCTGACATACAACTCCTAATGTCCTTGGAATCTCT
i papAnu2.chr5             I 17 I 1
e mm10.chr8                 87651498 880 - 129401213 I
e canFam3.chr16             17960311  2 -  59632846 I
e calJac3.chr3             190525714 65 - 190850796 I
e chlSab2.chr7             135423972 56 + 135778131 I
e rheMac3.chr5             183665341 56 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=1288323.000000
s hg38.chr4_KI270925v1_alt    287301 750 +    555799  
s panTro4.chr4             192984766 749 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198068284 750 + 198332218  
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183665397 743 + 184069350  
i rheMac3.chr5             I 56 C 0
s macFas5.chr5             189049586 743 + 189454096  
i macFas5.chr5             I 1 C 0
s papAnu2.chr5             178477959 755 + 178775436  
i papAnu2.chr5             I 1 C 0
s chlSab2.chr7             135424028 745 + 135778131  
i chlSab2.chr7             I 56 C 0
e mm10.chr8                 87651498 880 - 129401213 I
e canFam3.chr16             17960311   2 -  59632846 I
e calJac3.chr3             190525714  65 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=180061.000000
s hg38.chr4_KI270925v1_alt    288051 102 +    555799 TATATTTATGTTTACACTTAGATATGTATGTATAC-ATGATTATTGTTGTATATTA--ATGTTATTAAATTTATTCATATTTTTCTATTCTAGtgtattagtcca
s panTro4.chr4             192985515 102 + 193495092 TATATTTATGTTTACACTTAGATATGTATGTATAC-ATGATTATTGTTGtatatta--atgttattaaatttattcatatttttatattCTAGtgtattagtcca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198069034  98 + 198332218 TATATTTATTTGTACACTTAGA----TATGTATAT-GTGATTATTGTTGtatatta--atgttattaaatttattcatatttttatattCTAGtgtattagtcca
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183666140 101 + 184069350 AATATTTATTTGTACACTTAGATATGTGTGCATAC-ATGATTA---TTGtatattaatatgttattaaatttattcatatttttatattCTAGtgtattagtcca
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189050329 101 + 189454096 AATATTTATTTGTACACTTAGATATGTGTGCATAC-ATGATTA---TTGTATATTAATATGTTATTAAATTTATTCATATTTTTATATTCTAGtgtattagtcca
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178478714 101 + 178775436 AATATTTATTTGTACACTTagatatgtgtgcatac-atgatta---ttgtatattaatatgttataaaatttattcatatttttatattctagtgtattagtcca
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135424773 101 + 135778131 AATATTTATTTGTACACTTAGGTATGTATGTATAC-ATGATTA---TTGTATATTAATATGTTATTAAATTTATTCATATTTTTATATTCTAGtgtattagtcca
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17960313 102 -  59632846 TATGTTCTTATTTATACTCATTTATGGATGCATACAATTTTTA---CTGTGTATTACTTGATTGCTAAATTTATTCACTTTTATGTTTTATATAATTTTATTACA
i canFam3.chr16            I 2 I 61
e mm10.chr8                 87651498 880 - 129401213 I
e calJac3.chr3             190525714  65 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=593614.000000
s hg38.chr4_KI270925v1_alt    288153 362 +    555799 ttctcttgctgctttgaaaacatactcaagactgggtaatttataagggaaagtttttgtcttaattgactcacatggctgggaaggcctcaggaaacttacaatcatggctgaaggggaagcaagcacgtccttcttcacaaaggggtaggagagagaagtgcctagcaaagcggggaaagcccctt-atacaaccatcaggtttcatgagaatttactcactatcttgagaacagcagcataagggtaactgccccatgattcaattacctcccaccaggtccctcccaccacatatggggattatgggaactaaaattcaagattagatttgggtggggacagagccaaaccatatcaTC
s panTro4.chr4             192985617 361 + 193495092 ttctcatgctgctttgaaaacatactcaagactgggtaatttacaa-ggaaagtttttgtcttaattgactcacatggctgggaaggcctcaggaaacttacaatcatggctgaaggggaagcaagcacgtccttcttcacaaaggggtaggagagagaagtgcctagcaaagaggggaaagcccctt-atacaaccatcaggtttcatgagaatttactcactatcttgagaacagcagcataagggtaactgccccatgattcaattacctcccaccaggtccctcccaccacacatggggattatgggaactaaaattcaagattagatttgggtggggacagagccaaaccatatcaTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198069132 358 + 198332218 ttctcatgctgctttgaaaacatactcaagactgggtaatttataagggaaag----tggtttaattgactcacatggctgggaaggcctcaggaaacttacaatcatggctgaaggggaagcaagcacatccttcttcacaaaggggtaggagagagaagtgcctagcaaagaggggaaagcacctt-atacaaccatcagatctcaggagaatttactcacaatcttgagaacagcagcatgagggtaactgccccatgattcaattacctcccaccaggtccctcccaccacacatgggaattatgggaactaaaattcaagattagatttgggtggggacagagccaaactatatcaTC
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183666241 340 + 184069350 ttctcatgctgctttgaaaacatactcaatactgtgtaatttataagggaaag----tggcttcattgactcacatgcctgggaaggcctcaggaaacttacactgatgactgaaggggaagcaagcatgtccttctccacaaaggggtaggagagagaagtgccgagcaaagagaggaaagtcctttaaaaaaaccgtcagatctcatgagaatttactcactatcacgagaacagcagcatgagggtaaatgccccatgattcaattccctcccactgggtccctcccaccacacatggggattatgg-------------------gatttgggtggggacagagccaaaccatatcaTC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189050430 340 + 189454096 ttctcatgctgctttgaaaacatactcaatactgtgtaatttataagggaaag----tggcttcattgactcacatgcctgggaaggcctcaggaaacttacactgatgactgaaggggaagcaagcatgtccttctccacaaaggggtaggagagagaagtgccgagcaaagaggggaaagtcctttaaaaaaaccgtcagatctcatgagaatttactcactatcacgagaacagcagcatgagggtaaatgccccatgattcaattacctcccactgggtccctcccaccacacatggggattatgg-------------------gatttgggtggggacagagccaaaccatatcaTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178478815 340 + 178775436 ttctcatgctgctttgAAAACATACTCaatactgtgtaatttataagggaaag----tgGCTTCATTGACTCACAtgcctgggaaggcctcaggaaacttacactgatgactgaaggggaagcaagcatgtccttcttcacaaaggggtaggagagagaagtgccgagcaaagaggggaaagtcctttaaaaaaaccatcagatctcatgagaatttactcactatcacgagaacagcagcaTGAGGGTAaatgccccatgattcaattacctcccactgggtccctcccaccacacatggggattatgg-------------------gatttgggtggggacagagccaaaccatatcatc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135424874 339 + 135778131 ttctcatgctgctttgaaaacatactcaatactgtgtaatttataagggaaag----tggcttaattgactcacatgcctgggaaggcctcaggaaacttacactgatgactgaaggggaagcaagcatgtccttcttcacaaaggggcaggagagagaagtgccaagcaaagaggggaaagtccctt-aaaaacccatcagatcttgtgagaatttactcactatctcgagaacagcagcgtgagggtaactgccccatgattcaattacctcccactgggtccctcccaccacacatggggattatgg-------------------gatttgggtggggacagagccaaaccatatcaTC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87651498 880 - 129401213 I
e canFam3.chr16             17960415  61 -  59632846 I
e calJac3.chr3             190525714  65 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=97970.000000
s hg38.chr4_KI270925v1_alt    288515 56 +    555799 TAGATAATTTTATTAAATAGTAATCATTTATAATTAATATATCTA--------ACTTATACAGT
s panTro4.chr4             192985978 56 + 193495092 TAGataattttattaaatagtaatcatttataattaatataCCTA--------ACTtatacagt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198069490 56 + 198332218 TAGATAATTTTATTAAATGGTAATCATTTATAATTAatatatcta--------acttatacaat
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183666581 52 + 184069350 TAGataattttattaaatagtaatcatttataatt----tatata--------aCTTATACAAt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189050770 52 + 189454096 TAGATAATTTTATTAAATAGTAATCATTTATAATT----TATATA--------ACTTATACAAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178479155 52 + 178775436 tagataattttattaaatagtaatcatttataatt----tatata--------acttatacaat
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135425213 56 + 135778131 TAGATAATTTTATTAAATAGTAATCGTTTATAATTAATATATCTA--------ACTTATACAAT
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17960476 62 -  59632846 tatatatttatattatatag--aatatttacattttgtatatttatatattatacatattcaat
i canFam3.chr16            I 61 I 19
e mm10.chr8                 87651498 880 - 129401213 I
e calJac3.chr3             190525714 65 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=1100663.000000
s hg38.chr4_KI270925v1_alt    288571 601 +    555799  
s panTro4.chr4             192986034 604 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198069546 595 + 198332218  
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183666633 593 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189050822 593 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178479207 593 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135425269 593 + 135778131  
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87652378 633 - 129401213  
i mm10.chr8                I 880 C 0
s canFam3.chr16             17960557 578 -  59632846  
i canFam3.chr16            I 19 I 163
e calJac3.chr3             190525714  65 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=114469.000000
s hg38.chr4_KI270925v1_alt    289172 56 +    555799 AAGAAAAGAA-------AAACGAATAAAGGTATTGAATTAAAA--ATTCTTGGAAAAACAAAAAT
s panTro4.chr4             192986638 56 + 193495092 AAGAAAAGAA-------AAACGAATAAAGGTATTGAATTAAAA--ATTCTTGGAAAAACAAAAAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198070141 52 + 198332218 ----AAAGAA-------AAACGAATAAAGGGATTGAATTAAAA--ATTCTTGGAAAAACAAAAAT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183667226 56 + 184069350 GAGAAAAGAA-------AAATGAATAAAGGGATGGAATTAAAA--ATTCTTGGAAAAACAAAAAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189051415 56 + 189454096 GAGAAAAGAA-------AAATGAATAAAGGGATGGAATTAAAA--ATTCTTGGAAAAACAAAAAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178479800 54 + 178775436 gag--aagaa-------aaatgaataaagggatggaattaaaa--attcttggaaaaacaaaaat
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135425862 56 + 135778131 GAGAAAAGAA-------AAATGAATAAAGGGATGGAATTAAAA--ATTCTTGGAAAAACAAAAAT
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87653011 54 - 129401213 AAT-AAAGAG-------AAATGAAC-AAGAGACAGAACCAAAC--ACTCATAAAAGAAgggaaat
i mm10.chr8                C 0 I 233
s canFam3.chr16             17961298 65 -  59632846 aagtaaataaaatctttaaacaaaCAAACACTTGAGACAAAAATTAATCTCAGAAAAACAAAAAT
i canFam3.chr16            I 163 C 0
e calJac3.chr3             190525714 65 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=348257.000000
s hg38.chr4_KI270925v1_alt    289228 161 +    555799 TAATCTCACAACCGCTT----AAACACAGATTACAGCAAATTTTGAAATGCCTCTCAAATTATTGAGTGCTT---GTTCAGTTA--TTTTTAATAAATGTATTTAATATGGATTGTGT-ACAGTGAAATGCTCATTCTTGTGC-TAGTAAAAGTGAATTTTAGTAAAATCAT
s panTro4.chr4             192986694 161 + 193495092 TAATTTCACAACCACTT----AAACACAGATTACAGCAAATTTTGAAATGCCTCTCAAATTATTGAGTGCTT---ATTCAGTTA--TTTTTAATAAATGTATTTAATATGGATTGTGT-ACAGTGAAATGCTCATTCTTGTGC-TAGTAAAAGTGAATTTTAGTAAAATCAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198070193 168 + 198332218 TAATCTCACAACCCCTTAAAGAAACACAGATTACAGCAAATTTTGAAATCCCACTCAAATTATTGAGTGCTTGTAGTTCAGTTA--TTTTTAATAAATGTATTTAATATGGATTGTGT-ACAGTGAAATACTCATTCTTGTGC-TAGTAAAAGTGAATTTTAGTAAAATCAT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183667282 167 + 184069350 TAATCTCACAATCCATTAAAGAAACTCAGATTACAGCAAATTTTGAAATGCCTCTCAAATTATTGAGTGCTTGCAGTGCAGTTA--TTTTTAGTAAATGTATTCAATATGGATTGTGT--CAGTGAAATACCCATTCTTGTGC-TAGTAAAAGTGAATTTTGGTAAAATCAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189051471 168 + 189454096 TAATCTCACAATCCATTAAAGAAACTCAGATTACAGCAAATTTTGAAATGCCTCTCAAATTATTGAGTGCTTGCAGTGCAGTTA--TTTTTAGTAAATGTATTCAATATGGATTGTGT-ACAGTGAAATACTCATTCTTGTGC-TAGTAAAAGTGAATTTTGGTAAAATCAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178479854 167 + 178775436 taatctcACAATCCATTAAAGAAACTCAGATTACAGCAAATTTTGAAATGTCTCTCAAATTATTGAGTGCTTGCAGTGCagtta--tttttagtaaatgtatTCAATATGGATTGTGT--CAGTGAAATACTCATTCTTGTGC-TAGTAAAAGTGAATTTTGGTAAAATCAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135425918 168 + 135778131 TAATCTTGCAACCCATTAAAGAAACTCAGATTACAGCAAATTTTGAAATGCCTCTCAAATTATTAGGTGCTTGTAGTTCAGTTA--TTTTTAGTAAATGTATTCAATACGGATTGTGT-ACAGTGAAATACTCATTCTTGTGC-TAGTAAAAGTGAATTTTGGTAAAATCAT
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87653298 157 - 129401213 TAGTCTCGCAACCCATTCACGAAATTTAGATTAGGACACATTTT-AAATTCCCATAAAATTATAGAGTGCTTGTTGCTCAG-----TTTTTAAGGATAGTATTCATTGATGATCACGACATAGTAA---------TCCTATACACAAAAAAAATGATTATTAGTAAAATGAT
i mm10.chr8                I 233 I 3183
s canFam3.chr16             17961363 164 -  59632846 TAACCC----AACTATTAAAGAAGCTCAGATTAAAGTACATCTTGAAATGCTGATCAACTTATTGAGCGCTTGTGGTTTATTTACTTTTTTAAtgatagtggttaatattgacaatggtgtagtaaaatactcattctcatac--actactggt--ATCTTGGCAAAATCAT
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190525714  65 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=19924.000000
s hg38.chr4_KI270925v1_alt    289389 11 +    555799 TCTTGATAAGA
s panTro4.chr4             192986855 11 + 193495092 TCTTGGTAAGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198070361 11 + 198332218 TCTTGGTAGGA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183667449 11 + 184069350 TCTTGGTAAGA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189051639 11 + 189454096 TCTTGGTAAGA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178480021 11 + 178775436 TCTTGGTAAGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135426086 11 + 135778131 TCTTGGTAAGA
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17961527 11 -  59632846 CCCCCCCAAAA
i canFam3.chr16            C 0 I 17
e mm10.chr8                 87653455 3183 - 129401213 I
e calJac3.chr3             190525714 65 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=318475.000000
s hg38.chr4_KI270925v1_alt    289400 175 +    555799 CTCTGTATAACTTTGGACAT-AAATTACTATTCCTGCCTGGGCATGGTGGCTcgggcatggggtgcatgcctgtaat-ccagctacttgggaggctgaggtgggagaatcgtttgaacccaggaggccgaggttgcagtgagccgagatcacaccactgccctccagcctggccaac
s panTro4.chr4             192986866 175 + 193495092 CTCTGTATAACTTTGGACAT-AAATTACTATTCCTGCCTGGGCATAGTGGCTcgggcatggggtgcatgcctgtaat-ccagctacttgggaggctgaggtgggataatcgtttgaacccgggaggccgaggttgcagtgagccgagatcacaccactgccctccagcctggccaac
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198070372 177 + 198332218 CTGTGTATAACTTTGGATGTAAAATTACTATTCCTGCCTGGGCATGGTGGCTcaggcatggggtgcatgcctgtaatcccagctacttgggaggctgaggtgggagaatcatttgaacccaggaggccgaggttgcagtgagctgagatcacaacactgccctccagcctggacgac
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183667460 177 + 184069350 CTCTGTATAACTTTGGATGTAAAATTATTATTCCTGCCTGGGCACGGTGGCTcgggcatggggtgcacgcctgtaatcccagctacttcggagactgaggtgggagaatcatttgaacccaagaggccaaggttgcagtgagccgagatcacaccactgcccttcaccctggccaac
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189051650 177 + 189454096 CTCTGTATAACTTTGGATGTAAAATTATTATTCCTGCCTGGGCACGGTGGCTcgggcatggggtgcacgcctgtaatcccagctacttcggagactgaggtgggagaatcatttgaacccaagaggccaaggttgcagtgagccgagatcacaccactgcccttcagcctggccaac
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178480032 177 + 178775436 CTCTGTATAACTTTGGatgtaaaattattattcctgcctgggcatggtggctcgggcatggggtgcatgcctgtaatcccagctacttcggagactgaggtgggagaatcatttgaacccaagaggccaaggttgcagtgagccgagatcacaccactgcccttcagcctggccaac
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135426097 177 + 135778131 CTCTGTATAACTTTGGATGTAAAATTATTATTCCTGCCTGGGCATGGTGGCTcgggcatggggtgcacgcctgtaatcccagctacttgggagactgaggtgggagaatcatttgaacccaagaggccaaggttgcagtgagccgagatcacaccactgcccttcagcctggccaac
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87653455 3183 - 129401213 I
e canFam3.chr16             17961538  17 -  59632846 I
e calJac3.chr3             190525714  65 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=310598.000000
s hg38.chr4_KI270925v1_alt    289575 185 +    555799 agagtgaggattcatctc----------------------------------------------------------------aaaaTATATATATA-ATTGTTATTATTATTCC--------------TTTTAGAAATCTTATCTAAACAAATTTGGGCCAAGACTTGTTTAAAAGATGTCTGGAcatttttctc-taacagcaaaattggaaaacaaactaaacgttgataaataagagaaaagtaagatcaattatggtctgt
s panTro4.chr4             192987041 239 + 193495092 agagtgagGATTCAtctctctctctctctctctctctctctctctctctct----------atatatatatatatatatatatatatatatatata-ATTATTATTATTATTCC--------------TTTTAGAAATCTTATCTAAACAAATTTAGGCCAAGACTTGTTTAAAAGATGTCTGGACATTTTTCTC-TAACAGCAAAATTGGAAAACAAACTAAACCTTGATAAATAAGAGAAAAGTAAGATCAATTATGGTCTGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198070549 217 + 198332218 agagtgagaattcatctc---------------------------------aaaaaaaaaaaaatatatatatatatatacacatatatgtatatatatTATTATTATTATTCC--------------TTTTAGAAATCTTATCTAAACAAATTTAGGCCaagacttatttaaaagatgtcttgacatttttctc-taacagcaaaattggaaaacaaactaaaccttgaaaaataagagaaaagtaagatcaattatggtctgt
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183667637 186 + 184069350 agactaagaattcatcAA----------------------------------------------------------------A--ATATATATATA------------TAGTCCTNNNNNNNNNNNNNTTTTTGAAATCTTATCTAAACAAATTTAGGCCaagatatatttaaaagatgtcttgacatttttctc-taacagcaaaattggaaagcaaactaaaccttgaaaaataagagaaaagtaatatcaattatggtctgt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189051827 174 + 189454096 agactaagaattcatcAA----------------------------------------------------------------AATATATATATATA------------TATTCC--------------TTTTTGAAATCTTATCTAAACAAATTTAGGCCaagatatatttaaaagatgtcttgacatttttctc-taacagcaaaattggaaagcaaactaaaccttgaaaaataagagaaaagtaatatcaattatggtctgt
i macFas5.chr5             C 0 I 788
s papAnu2.chr5             178480209 174 + 178775436 agactaagaattcatcaa----------------------------------------------------------------aatatatatatata------------tgttcc--------------ttTTTGAAATCTTATCTAAACAAATTTAGGCcaagatatatttaaaagatgtCTTGACATTTTTCTC-TAACAGCAAAATTGGAAAGCAAACTAAACcttgaaaaataagagaaaagtaaTATCAATTATGGTCTGT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135426274 172 + 135778131 agactaagaattcatcAA----------------------------------------------------------------A--ATATATATATA------------TATTCC--------------TTTTTGAAATCTTATCTAAACAAATTTAGGCCaagatatatttaaaagatgtcttgacatttttctc-taacagcaaaattggaaagcaaactaaaccttgaaaaataagagaaaagtaatatcaattatggtctgt
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17961555 169 -  59632846 AGACTGAAAATCTAACTT----------------------------------------------------------------TGAATTCA---ATA-----------TTCTTAT--------------TTTTAGAAATATTGTCTAAACAAACTCAAGCCAAGAC-tatataaaaggtatctcaacattttttttgtaatagcaaaatttgaaaacaacctaaacactgaaaaat---agaatagttatatcaattatggccaat
i canFam3.chr16            I 17 C 0
e mm10.chr8                 87653455 3183 - 129401213 I
e calJac3.chr3             190525714  65 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=2800.000000
s hg38.chr4_KI270925v1_alt    289760 1 +    555799 c
s panTro4.chr4             192987280 1 + 193495092 C
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198070766 1 + 198332218 c
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183667823 1 + 184069350 c
i rheMac3.chr5             C 0 I 765
s macFas5.chr5             189052789 1 + 189454096 C
i macFas5.chr5             I 788 C 0
s papAnu2.chr5             178480383 1 + 178775436 C
i papAnu2.chr5             C 0 I 1587
s chlSab2.chr7             135426446 1 + 135778131 c
i chlSab2.chr7             C 0 I 765
s canFam3.chr16             17961724 1 -  59632846 c
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87653455 3183 - 129401213 I
e calJac3.chr3             190525714 65 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=476.000000
s hg38.chr4_KI270925v1_alt    289761 1 +    555799 c
s panTro4.chr4             192987281 1 + 193495092 C
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198070767 1 + 198332218 c
i ponAbe2.chr4             C 0 I 771
s macFas5.chr5             189052790 1 + 189454096 C
i macFas5.chr5             C 0 I 1
s canFam3.chr16             17961725 1 -  59632846 t
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87653455 3183 - 129401213 I
e calJac3.chr3             190525714 65 - 190850796 I
e chlSab2.chr7             135426447 765 + 135778131 I
e papAnu2.chr5             178480384 1587 + 178775436 I
e rheMac3.chr5             183667824 765 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=-820.000000
s hg38.chr4_KI270925v1_alt    289762 1 +    555799 -C
s panTro4.chr4             192987282 1 + 193495092 -C
i panTro4.chr4             C 0 C 0
s canFam3.chr16             17961726 1 -  59632846 a-
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87653455 3183 - 129401213 I
e calJac3.chr3             190525714 65 - 190850796 I
e chlSab2.chr7             135426447 765 + 135778131 I
e papAnu2.chr5             178480384 1587 + 178775436 I
e macFas5.chr5             189052791 1 + 189454096 I
e rheMac3.chr5             183667824 765 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198070768 771 + 198332218 I

a score=14494.000000
s hg38.chr4_KI270925v1_alt    289763 13 +    555799 GTATGAAGCTATT---
s panTro4.chr4             192987283 13 + 193495092 GTATGAAGCTATT---
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198071539 13 + 198332218 GTATGAAACTATT---
i ponAbe2.chr4             I 771 C 0
s rheMac3.chr5             183668589 13 + 184069350 GTATGAAGCTATT---
i rheMac3.chr5             I 765 C 0
s macFas5.chr5             189052792 13 + 189454096 GTATGAAGCTATT---
i macFas5.chr5             I 1 C 0
s chlSab2.chr7             135427212 13 + 135778131 GTATGAAGCTATT---
i chlSab2.chr7             I 765 C 0
s canFam3.chr16             17961727 16 -  59632846 gtaacgaaatgccagt
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87653455 3183 - 129401213 I
e calJac3.chr3             190525714 65 - 190850796 I
e papAnu2.chr5             178480384 1587 + 178775436 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=61022.000000
s hg38.chr4_KI270925v1_alt    289776 33 +    555799 ---TATTTAAATT-TTGCTCTTTATGTATTTTCAATA
s panTro4.chr4             192987296 33 + 193495092 ---TATTTAAATT-TTGCTCTTTATGTATTTTCACTA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198071552 33 + 198332218 ---TATTTAAATT-TTGCTCTTTATGTATTTTCAATA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183668602 33 + 184069350 ---CATTTAAATT-TTGCTCGTTACGTATTTTCAATA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189052805 33 + 189454096 ---CATTTAAATT-TTGCTCGTTACGTATTTTCAATA
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135427225 33 + 135778131 ---CATTTAAATT-TTGCTCTTTATGTATTTTCAATA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190525779 33 - 190850796 ---TGTTTAAACT-TTGCTCTTTATGTATTTCTAATA
i calJac3.chr3             I 65 C 0
s canFam3.chr16             17961743 37 -  59632846 gataatttaaaatgttggttttgatgaatatttaata
i canFam3.chr16            C 0 I 1063
e mm10.chr8                 87653455 3183 - 129401213 I
e papAnu2.chr5             178480384 1587 + 178775436 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=316339.000000
s hg38.chr4_KI270925v1_alt    289809 213 +    555799 TTCAGTGCAA-TTGctgccacc-agcagctgtgtggccttggcaagagccttccttcctctgcgtcttgatttcctcCAAGGTGGTGGAGACCTCAGTCCTCCAGAGGACACCTAGTTGCGCTT-GCGTCTGCTGctgccactgctagatctttgaccacggaaggtaaatgaacccctcgaggcctaggtttcttacctgtaaggcagggataat
s panTro4.chr4             192987329 213 + 193495092 TTCAGTGCAA-TTGctgccacc-agcagctgtgtggccttggcaagagccttctttcctctgcgtcttgatttcctcCAAGGTGGTGGAGACCTCAGTCCTCCAGAGGACacctggttgcgctt-gcgtctgctgctgctactgctagatctttgaccacggaaggtaaatgaacccctcgaggcctaggtttcttacctgtaaagcagggataat
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198071585 213 + 198332218 TGCGGTGCAA-TTGctgccacc-accagctgtgtggccttgacaagagccttccttcctctgagtcttgatttcctcCAAGGCGGTGGAGACCTCAGTCCTCCAGAGGACacctggttgtgctt-gcgtctgctgctgccaccgttcgatctttgaccacggaaggtaaatgaacctctcaaggcctaggtttcttatctgtaaagcaggggtaat
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183668635 204 + 184069350 TGCAGTGCAA-TTGCTGCCACC-ACCAGCTGTGTGGCCTTGACAAGAGCC----TTCATCTGGGTTTTGAGTTCCTCCAAGgtggtggagacctcaggcctccaggggccacctggttgcgctt-gcttctgctgctgccaccgctagatctttggccgtggaaagt-----aacctctcaaggcctaggtttcttatctgtaaagcagtgataat
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189052838 204 + 189454096 TGCAGTGCAA-TTGCTGCCACC-ACCAGCTGTGTGGCCTTGACAAGAGCC----TTCATCTGGGTTTTGAGTTCCTCCAAGgtggtggagacctcaggcctccaggggccacctggttgcgctt-gcttctgctgctgccaccgctagatctttggccgtggaaagt-----aacctctcaaggcctaggtttcttatctgtaaagcagcgataat
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135427258 209 + 135778131 TGCAGTGCAA-GTGCTGCCAGC-ACCAGCCGTGTGGCCTTGACATGAGCC----TTCATCTGCGTTTTGATTTCCTCCAAGGTGGTGGAGACCTCAGTCCTCCAGGgaccacctggttgcgcct-gcttctgctgctgccaccgctagatctttggccaaggaaggtaaatgaacctctcgaggcctaggtttcttatctgtaaagcagcgataat
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190525812 216 - 190850796 TGCAGTAAAATTTGCTGCCACCAACCAGCAGTGAGGCCTTGACACGATCCTTTGCCCCTCTGTGTTCTGATATCCTCCATGGTGCTGGAGATCTCACTCCTCGAGACGCCACctgcttgcatttggtttctgctgctcccaccacgagatctttgaccacagaaggtaaatgaatcattcaagacctaggtttcttatctgtaaagcagggataat
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87653455 3183 - 129401213 I
e canFam3.chr16             17961780 1063 -  59632846 I
e papAnu2.chr5             178480384 1587 + 178775436 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=2730.000000
s hg38.chr4_KI270925v1_alt    290022 3 +    555799 aat
s panTro4.chr4             192987542 3 + 193495092 aat
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183668839 3 + 184069350 aat
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189053042 3 + 189454096 aat
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135427467 3 + 135778131 aat
i chlSab2.chr7             C 0 I 15
e mm10.chr8                 87653455 3183 - 129401213 I
e canFam3.chr16             17961780 1063 -  59632846 I
e calJac3.chr3             190526028 0 - 190850796 C
e papAnu2.chr5             178480384 1587 + 178775436 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198071798 0 + 198332218 C

a score=2238.000000
s hg38.chr4_KI270925v1_alt    290025 4 +    555799 aATC
s panTro4.chr4             192987545 4 + 193495092 aATC
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183668842 4 + 184069350 aatC
i rheMac3.chr5             C 0 I 11
s macFas5.chr5             189053045 4 + 189454096 aatC
i macFas5.chr5             C 0 C 0
e mm10.chr8                 87653455 3183 - 129401213 I
e canFam3.chr16             17961780 1063 -  59632846 I
e calJac3.chr3             190526028 0 - 190850796 C
e chlSab2.chr7             135427470 15 + 135778131 I
e papAnu2.chr5             178480384 1587 + 178775436 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198071798 0 + 198332218 C

a score=26174.000000
s hg38.chr4_KI270925v1_alt    290029 321 +    555799 ATAACGACCTCggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcttggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgtggtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccggggggcggagcttgcagtgagcagagatggagccactgcactccagcctgggcgacagagcgagactccgtctcaaataaataaataaataaataaataaata
s panTro4.chr4             192987549 309 + 193495092 ATAACGACCTCggccgggcgcggtggctcacgcctgtaatcccagcacttcgggaggccgagacgggcggatcatgaggtcaggagatcgagaccatcttggctaacacggtgaaaccccgtctctattaaaaatacaaaaaattagctgggcctggtgtccggcgcctgtaatcccagctactcgggaggctgaggcaggagaatggcatgaacccgggaggcggagcttgcattgagccgagatcgcaccactgcactccagcctgggcgacagagcgagactccgtctc------------aaataaataaataaata
i panTro4.chr4             C 0 C 0
e mm10.chr8                 87653455 3183 - 129401213 I
e canFam3.chr16             17961780 1063 -  59632846 I
e calJac3.chr3             190526028   0 - 190850796 C
e chlSab2.chr7             135427470  15 + 135778131 I
e papAnu2.chr5             178480384 1587 + 178775436 I
e macFas5.chr5             189053049   0 + 189454096 C
e rheMac3.chr5             183668846  11 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198071798   0 + 198332218 C

a score=4422.000000
s hg38.chr4_KI270925v1_alt    290350 8 +    555799 aataaTCA
s panTro4.chr4             192987858 8 + 193495092 aataaTCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198071798 8 + 198332218 aataATCA
i ponAbe2.chr4             C 0 C 0
s calJac3.chr3             190526028 8 - 190850796 aataatca
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87653455 3183 - 129401213 I
e canFam3.chr16             17961780 1063 -  59632846 I
e chlSab2.chr7             135427470 15 + 135778131 I
e papAnu2.chr5             178480384 1587 + 178775436 I
e macFas5.chr5             189053049 0 + 189454096 C
e rheMac3.chr5             183668846 11 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=6424.000000
s hg38.chr4_KI270925v1_alt    290358 10 +    555799 TAACGACCTC
s panTro4.chr4             192987866 10 + 193495092 TAACGACCTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198071806 10 + 198332218 TAATGACCTT
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189053049 10 + 189454096 TAACAACTCT
i macFas5.chr5             C 0 I 1
s calJac3.chr3             190526036 10 - 190850796 taacaacctc
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87653455 3183 - 129401213 I
e canFam3.chr16             17961780 1063 -  59632846 I
e chlSab2.chr7             135427470 15 + 135778131 I
e papAnu2.chr5             178480384 1587 + 178775436 I
e rheMac3.chr5             183668846 11 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=73631.000000
s hg38.chr4_KI270925v1_alt    290368 61 +    555799 ATCAGCTTGCAAGAATCAGTTcat--acacacacacacacac------------aacacacacac--cccacattat
s panTro4.chr4             192987876 73 + 193495092 ATCAGCTTACAAGAATCAGTTcat--acacacacacacacacacacacacacaaaacacacacac--CCCACATCAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198071816 75 + 198332218 ATCAGCTTACAAGAATCAGTTcat--acacacacacacacacacacacacacaaaacacacacacaTCCCACATCCT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183668857 58 + 184069350 ATCAGCTTACAAGTATCAGTTCAT--ACCcacacacacacac---------------acacacaA--GCCACATCAT
i rheMac3.chr5             I 11 C 0
s macFas5.chr5             189053060 58 + 189454096 ATCAGCTTACAAGTATCAGTTcat--acccacacacacacac---------------acacacaa--gccacatcat
i macFas5.chr5             I 1 C 0
s chlSab2.chr7             135427485 60 + 135778131 atcagctcacaagTATCAGTTCATacacacacacacacacac---------------acacacaA--GCCACATCAC
i chlSab2.chr7             I 15 C 0
s calJac3.chr3             190526046 47 - 190850796 atcaggttatAAGAGTCAGTTcat--acacaaacacacacac----------------------------acatcat
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87653455 3183 - 129401213 I
e canFam3.chr16             17961780 1063 -  59632846 I
e papAnu2.chr5             178480384 1587 + 178775436 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=175006.000000
s hg38.chr4_KI270925v1_alt    290429 97 +    555799 acacataaaaaacacggacaacaG-AACCTTTAGAGCTGT--ACGTGATAACTGTATTGTTTTCACCTTTAAAATGAGAAGCTTAGACA-GACAGAATCTG
s panTro4.chr4             192987949 97 + 193495092 ACACATATAAAACACTGACAACAG-AACCTTTAGAGCTGT--ACGTGATAACTGTATCGTTTTCACCTTTAAAATGAGAAGCTTAGACA-GACAGAATCTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198071891 93 + 198332218 ACACATATAAAACACTGACAACAG-AACCTTTAGAGCTGT--ACGTGTTAACTGTATTGttttcacctttaaaatgagaagctt----a-gacagaatctg
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183668915 93 + 184069350 ACAAATATAAGACACTGACAACAG-AACCTTTAGTGCTGT--ATGTGTTAACTATATTgtttccacctttaaaatgagaagctt----a-gacagaatctg
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189053118 93 + 189454096 acaAATATAAGACACTGACAACAG-AACCTTTAGTGCTGT--ATGTGTTAACTATATTGTTTCCACCTTTAAAATGAGAAGCTT----A-GACAGAATCTG
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135427545 93 + 135778131 ACAAATATAAGACACTGACAACAG-AACCTTTAGTGCTGT--AGATGTTAACTATATTGTTTTCACCTTTAAAATGAGAAGCTT----A-GACAAAATCTG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190526093 94 - 190850796 acacatacaaaacacagacaACAG-AATCTTCAGTGCTGT--ATGTGTTAACTACATTGTTTTCACCTTTAAGATCAGAAGCTT----ATGACGGAATCTG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17962843 93 -  59632846 atatatataaaacattgacagcagaaatacttagtgctataaaagtgtt---tatattattTTCGCTTTTAAAATAAGCAGTTT----T-GGTAAGATCTG
i canFam3.chr16            I 1063 C 0
e mm10.chr8                 87653455 3183 - 129401213 I
e papAnu2.chr5             178480384 1587 + 178775436 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=377502.000000
s hg38.chr4_KI270925v1_alt    290526 162 +    555799 AGAGCTCCCTTTC-AGTTTTAAATTGTTTATTTTTGTTTTAAATTTTGTTTCTCAGACCTCTCAGGGATGAATACAATTTTTAAACTGGGGGAATTTTAATTACTGATTGGGGTTATCATATTTAGATGGTTTGATAAAGAATTAAACTTGCAGTTCTAATTT
s panTro4.chr4             192988046 163 + 193495092 AGAGCTCCCttttaaattttaaattgtttatttttgttttaaattttGTTTCTCAGACCTCTCAGGGATGAATACAATTTTTTAACTGGGGGAATTTTAATTACTGATTGGGGTTATCATATTTAGATGATTTGATAAAGAATTAAACTTGCAGTTCTAATTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198071984 162 + 198332218 agagctccctttc-agttttaaATCGTTTATTTTTGTTTTAAATTTTGTTTCTCAGACCTCTCAGGGATGAATACAATTTTTAAACTGGGGGAATTTTAATTACTGATTGGGGTTATCATATTTAGATGATTTGATAAAGAATTAAACTTGCAGCTCTAATTT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183669008 162 + 184069350 agagctccctttc-agttttaaattgtttattctTATTTTAAATTTTGTTTCTCAAACCTCTCAGGGAGGAATACAATTTTTAAACTGGGGGAATTTTAATTACTGATTGGGGTTATCATATTTAGATGGTTTGATAAAGAATTAAACTTGCAGTTCTAATTA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189053211 162 + 189454096 AGAGCTCCCtttc-agttttaaattgtttattcttattttaaattttGTTTCTCAAACCTCTCAGGGAGGAATACAATTTTTAAACTGGGGGAATTTTAATTACTGATTGGGGTTATCATATTTAGATGGTTTGATAAAGAATTAAACTTGCAGTTCTAATTA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178481971 162 + 178775436 aGAGCTCCCTTTc-agttttaaattgtttattcttattttaaattttgtttctcaaACCTCTCAGGGAGGAATACAATTTTTAAACTGGGAGAATTTTAATTACTTATTGGGGTTATCATATTTAGATGGTTTGATAAAGAATTAAACTTGCAGTTCTAATTA
i papAnu2.chr5             I 1587 C 0
s chlSab2.chr7             135427638 162 + 135778131 AGAGCTCCCtttc-agttttaaattgtttattcttattttaaattttGTTTCTCAGACCTCTCAGGGAGGAATACAATTTTTAAACTGGGGGGATTTTAATTACTGATTGGGGTTATCATATTTAGATGGTTTGATAAAGAATTAAACTTGCAGTTCTAATTA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190526187 150 - 190850796 AGAGCTCCCTTTC-AGTTGCAAATTGTTT-TTTTTATTTTTAATTTTGT----------TCTCAGGAATCAATATAATTTTTAAACTGGGGGAATTTTAATTGCTGATTGAGGTTATCATATTTAGATAGTTCAATAAAGaattaaacttttatttttaatt-
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17962936  98 -  59632846 CAAGTTTTCTTTT-AGTTCTAAAATGTGC-----------------------------------------------------AGATTTGAAGGGTTTTAATTATTGATCGATGTT-----------ATGTTTATACAAAGAATTACATTTTCAGTTTTAATTT
i canFam3.chr16            C 0 I 5821
e mm10.chr8                 87653455 3183 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=469146.000000
s hg38.chr4_KI270925v1_alt    290688 228 +    555799 AAAAATTGAGAAGGTATCCTGTTTCTACTGGTGAAGACATGAAACCTTAGA-CCTGAACAGAGGAT--GCCATCGTGTATAAACCAAACAAGAACCAGAGCAGCACAGCTCACCTTGGGGCCACTGACCCAAACAAAGGAAAAGGGACCTGCCTGCAGTCATCGGCCTCAGCGACTGGCCCTACAAACCTCAAATTTTGAAAATGCTATCACTCGGAAAGTGGCCTATTGG
s panTro4.chr4             192988209 228 + 193495092 AAAAATTGAGAAGGTATCCTGTTTCTACTGGTGAAGACATGAAACCTTAGA-CCTGAACAGAGGAT--GCCATCATGCATAAACCAAACAAGAACCAGAGCAGCACAGCTCACCTCAGGGCCACTGACCCAAACAAAGGAAAAGGGACCTGCCTGCAGTCATCGGCCTCAGCGACTGGCCCTACAAACCTCAAATTTCGAAAATGCTATCACTCGGAAAGTGGCCTATTGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198072146 228 + 198332218 AAAAATTGAGAAGGTATCCCGTTTCTACCGGTAAAGACATGAAACCTTAGA-CCTGAACAGAGGAT--GCCATTGTGTATAAACCAAACAAGAACCAAAGCAGCACAGCTCACCTCGGGGCCACTGACCCAAACAAAGGAAAAGGGACCTGCCTGCAATCATCGGCCTCAGCGACTGGCCCTACAAACCTCAAGTTTTCAAAATACTACCACTCTGAAAGTGGAGTATTGG
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183669170 227 + 184069350 AGAAATTGAGAAGATATCCTGTTTCTACTGGTAAAGAGATGAAAACTTAGACCCTGAACAGAGGAT--GCCTTCGTGTATAAACCAAACAAGAATCAAAGCAGCACAGCTCACCTCGGGGCCACTGACCCAAACCAAGGGAAAGGGACCTGCCTGCGACAATTGA-CTCACCAACGGGCCCTACAAACCTCAAGTTTTGAAAATACTA-CCCTCTGAAAGTGGCCTGTTGG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189053373 228 + 189454096 AGAAATTGAGAAGATATCCTGTTTCTACTGGTAAAGAGATGAAAACTTAGACCCTGAACAGAGGAT--GCCTTCGTGTATAAACCAAACAAGAACCAAAGCAGCACAGCTCACCTCGGGGCCACTGACCCAAACCAAGGGAAAGGGACCTGCCTGCAACAATTGA-CTCACCGACGGGCCCTACAAACCTCAAGTTTTGAAAATACTCTCCCTCTGAAAGTGGCCTGTTGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178482133 228 + 178775436 AGAAATTGAGAAGATATCCTGTTTCTACTGGTAAAGAGATGAAAACTTAGACCCTGAACAGAGGAT--GCCTTCGTGTATAAACCAAACAAGAACCAAAGCAGCACAGCTCACCTCGGGGCCACTGACCCAAACCAAGGGAAAGGGACCTGCCTGCGACAATTGA-CTCACCGACGGGCCCTACAAACCTCAAGTTTTGAAAATACTCTCCCTCTGAAAGTGGCCTGTTGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135427800 227 + 135778131 AGAAATTGAGAAGATATCCTGTTTCTACTGGTAAAGAGATGAAAGCTTAGACCCTGAACAGAGGAT--GCCTTCGTGTATAAACCAAACAAGAACCAAA-CAGCACAGCTCACCTCGGGGCCACTGACCCAAACCAAGGGAAAGGGACCTGCCTGCGATAATTGA-CTCACCGACTGGCCGTACAAACCTCAAGTTTTGAAAATACTCTCCCTCTGAAAGTGGCCTGTTGG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190526337 228 - 190850796 aaaaattGAGAAGGTATCCTGTTTCTACTGGTAAAGAGATTAAACCTTAGACTCTGAACAGAGGATACGCCTTGGCCTATAAACCAAACAGGAACCAGAGCAGCACAGCTGACCTTGGGGCAGC--ACCC-AACACAGATAAAGGGACCTGCGTGACATAATCCACCTCACCCATTGACCTTACAGACATAGAGTTCTGAAAATACCATCACTGTGAAAGTGGCCTGCTGG
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87653455 3183 - 129401213 I
e canFam3.chr16             17963034 5821 -  59632846 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=373549.000000
s hg38.chr4_KI270925v1_alt    290916 148 +    555799 GCAAAACAGAAGA----TTGGCCTCAGTC-ACATGGTAATATTCTCTTTATTGTGCCATCACACCTCAAA------------------------------------------------GAAATGAGTTTAGTTCCATAAAGCTATGTAACTAATG-AAAGCCATTTTCTGGCTGGCCAGTAAGATAAATGGCTGATTGGCAC
s panTro4.chr4             192988437 148 + 193495092 GCACAACAGAAGA----TTGGCCTCAGTC-GCATGGGAATATTCTCTTTATTGTGCCATCACACCTCAAA------------------------------------------------GAAATGAGTTTAGTTCCATAAAGCTATATAACTAATG-AAAGCCATTTTCTGGCTGGCCAGTAAGATAAATGGCTGATTGGCAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198072374 148 + 198332218 GCAAAACAGAAGA----CCGGCCTCAGTC-GCATGGGAATATTCTCCTTATTGTGCCATCACACCTCAAA------------------------------------------------GAAATGAGTTTAGTTCCATAAAGCTGTATAACTAATG-AAAGCCATTTTCTGGCTGGCCAGTAAGATAAATGGCTGATTGGCAC
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183669397 149 + 184069350 GCAAAACAGAAGA----CTGGCCTCAGTCTGCATAGGAATATTCTCTTTATTGTGCCATCACACCTCAAA------------------------------------------------GAAATGGGTTTAGTTCCATAAAGCTATATAACTAAAG-AAATCCATTTTCTGGCTGGCCAGTAAGATAAATGGCTGATTGGCAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189053601 149 + 189454096 GCAAAACAGAAGA----CTGGCCTCAATCTGCATGGGAATATTCTCTTTATTGTGCCATCACACCTCAAA------------------------------------------------GAAATGGGTTTAGTTCCATAAAGCTATATAACTAAAG-AAATCCATTTTCTGGCTGGCCAGTAAGATAAATGGCTGATTGGCAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178482361 149 + 178775436 GCAAAACAGAAGA----CTGGCCTCAGTCTGCATGGGAATATTCTCTTTATTGTGCCATCACACCTCAAA------------------------------------------------GAAATGGGTTTAGTTCCATAAAGCTATATAACTAAAG-AAATCCATTTTCTGGCTGGCCAGTAAGATAAATGGCTGATTGGCAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135428027 149 + 135778131 GCAAAACAGAAGA----CTGGCCTCAGTCTGCGTGGGAATATTCTCTTTATTGTGCCATCACACCTCAAA------------------------------------------------GAAATGGGTTTAGTTCCATAAAGCTATGTAACTAAAG-AAATCCATTTTCTGGCTGGCCAGTAAGATAAATGGCTGATTGGCAC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190526565 197 - 190850796 GCAAACCAGAAGA----TTGGCCTCAGTCTGCAGAGGAATATTCTCTTTCTTGTGCTATCACACCTCAAAGAAATGAGTGTAGTGCCGTAAAGCTATATGACTAACGAAACTCATATGGAAATGAGTGTAGTTCCGTAAAGCTATATGACTAATG-AAATCAATTTTCTGGCTAACTGGTCAGATAAATGGCTGATTGGCAC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17968855 151 -  59632846 gtaaaactggaGAGGATTTGGTCTAGTCCTGCAGAAGAGAATTCTCTTTACCATGCTTTCATACACCACA------------------------------------------------GAAATGATTTCAGTTCCATAGAGCTATACAGACAATGAAAATAAACTCTCTGACTGACCA---ACATAAAGAACAGACTGGTGT
i canFam3.chr16            I 5821 C 0
e mm10.chr8                 87653455 3183 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=986052.000000
s hg38.chr4_KI270925v1_alt    291064 352 +    555799 ATACAAGGTATCACCTGTACCTTTCGCCACCATCACTCTCGTGAC---AAAATATCTTCAAAGTGGTTAATTTGCCAGTCAGATA-TTTAGTTTG--ATTAATTGTTATAAATGAGTTAAAAGCACACTGCAGTTCACTTTTCTCATACATTA-TTTTTCCTCCAACC------------CTATTGCTGTACCTTCTGAGACATGCTGATTGGATTCATTCTCTTTTGCTAAACAGGACTGCCCAAAAT---TTACTAGATGCTGAAACAAGAAGAAAATAGACTATTTTAGAAGAATTGAAGC-------AATCAAATATTTGCTCTGGCAAAGGAAA------------------AGCTTTTTACCCAAAATATTAGTTTTGCACTAACTTCAAAGC-------------------
s panTro4.chr4             192988585 352 + 193495092 ATACAAGGTATCACCTGTACCTTTCACCACCATCACTCTCGTGAC---AAAATATCTTCAAAGTGGTTAATTTGCCAGTCAGATA-TTTAGTTTA--ATTAACTGTTATAAATGAGTTAAAAGCACACTGCAGTTCACTTTTCTCATACATTA-TTTTTCCTCCAACC------------CTATTGCTGTACCTTCTGAGACATGCTGATTGGATTCATTCTCTTTTGCTAAATAGGACTGCCCAAAAT---TTACTAGATGCTGAAACAAGAAGAAAATAGAATATTTTAGAAGAATTGAAGC-------AATCAAATATTTGCTCTGGCAAAGGAAA------------------AGCTTTTTACCCAAAATATTAGTTTTGCACTAACTTCAAAGC-------------------
i panTro4.chr4             C 0 I 20
s ponAbe2.chr4             198072522 352 + 198332218 ATATAAGGTATCACCTGTACCTTTCGCCACCATCACTCTCGTGAC---AAAATATCTTCAAAGTGGTTAATTTGCTAGTCAGATA-TTTAGTTTG--ATTAACTGTTATAAATGAGTTAAAAGCACACTGCAATTCACTTTTCTCATACATTA-TTTTTCCTCCAACC------------CTATTGCTGTACCTTATGAGACATGCTGACTGGATTCATTCTCTTTTGCTAAATAGGACTGCCCAAAAT---TTACTAGATGCTGAAACAAGAAGAAAATAGAATATTTTAGAAGAATTGAAGC-------AATCAAATATTTCCTCTGGCAAAGGAAA------------------AACTTTTTACTCAAAATATTAGTTTTGTACTAACTTCAAAGC-------------------
i ponAbe2.chr4             C 0 I 20
s rheMac3.chr5             183669546 353 + 184069350 ATGTAAGGTATCACCTATACCTTTCGCCACCATCACTCTCGTGGC---AAAATATCTTCAAAGTGGTTAATTTGCTAGTTAGATA-TTTAGTTTG--ATTAACTGTTATAAATGAGTTAAAAGCACACTCCAGTTCACTTTTTTCATACATTA-TTTTTCCTCCAACC------------CTATTGCTATACGTTATGAGACATGCTGGTTGGATTCATTCTCTTTTGCTAAATAGGACTGCCCAAAAT---TTACTAGATCCTGAAACAAGAAGAAAATAGAATATTTTAGAAGAATTGAAGC------AAATCAAATATTTGCTCTGGCAAAGGAAA------------------AACTTTTTACCGAAAATATTCTTTTTGTACTAACTTGAAAGC-------------------
i rheMac3.chr5             C 0 I 20
s macFas5.chr5             189053750 353 + 189454096 ATGTAAGGTATCACCTATACCTTTCGCCACCATCACTCTCGTGGC---AAAATATCTTCAAAGTGGTTAATTTGCTAGTTAGATA-TTTAGTTTG--ATTAACTGTTATAAATGAGTTAAAAGCACACTCCAGTTCACTTTTTTCATACGTTA-TTTTTCCTCCAACC------------CTATTGCTATACGTTATGAGACATGCTGGTTGGATTCATTCTCTTTTGCTAAATAGGACTGCCCAAAAT---TTACTAGATCCTGAAACAAGAAGAAAATAGAATATTTTAGAAGAATTGAAGC------AAATCAAATATTTGCTCTGGCAAAGGAAA------------------AACTTTTTACCGAAAATATTCTTTTTGTAGTAACTTGAAAGC-------------------
i macFas5.chr5             C 0 I 1
s papAnu2.chr5             178482510 353 + 178775436 ATGTAAGGTATCACCTGTACCTTTCGCCACCATCACTCTCGTGGC---AAAATATCTTCAAAGTGGTTAATTTGCTAGTTAGATA-TTTAGTTTG--ATTAACTGTTATAAATGAGTTAAAAGCACACTCCAGTTCACTTTTTTCATACATTA-TTTTTCCTCCAACC------------CTATTGCTATACGTTATCAGACATGCTGGTTGGATTCATTCTCTTTTGCTAAATAGGACTGCCCAAAAT---TTACTAGATcctgaaacaagaagaaaatagaatattttagaaGAATTGAAGC------AAATCAAATATTTGCTCTGGCAAAGGAAA------------------AACTTTTtaccaaaaatattctttttgtacTAACTTGAAAGC-------------------
i papAnu2.chr5             C 0 I 1
s chlSab2.chr7             135428176 353 + 135778131 ATGTAAGGTATCACTTATACCTTTCGCCACCATCACTCTCGTGAC---AAAATATCTTCAAAGTGGTTAATTTGCTAGTTAGATA-TTTAGTTTG--ATTAACTGTTATAAACGAGTTAAAAGCACACTCCAGTTCACTTTTTTCATACATTA-TTTTTCCTCCAACC------------CTATTGCTATACGTTATGAGACATGCTGGTTGGATTCATTCTCTTTTGCTAAATAGGACTGCCCAAATT---TTACTAGATCCTGAAACAAGAAGAAAATAGAATATTTTAGAAGAATTGAAGC------AAATCAAATATTTGCTCTGGCAAAGGAAA------------------AACTTTTTACCCAAAATATTCTTTTTGTTCTAACTTCAAAGC-------------------
i chlSab2.chr7             C 0 I 20
s calJac3.chr3             190526762 344 - 190850796 ATG--AGGTACTACCTATGTCTTTCACCACCATCCCTCTCATGAC----AAATAACCTCAAAGTGGTTAATTAGAAAGTCAGATA-TTGAGTTTG--ATTAATTATTATAAATGAGTTAAAATCATGCTTCGGTTAACTTTTTTCATACATTATTTTTTCCTCCAACC------------CTGTTGCTCTAGCTTATGAGTCATGCTGATTGGATTCATTTTCTTTTGCTAAGTAGAACTGCCCAGAAT---TTACTAAAT------ACAACAAGAAAATAGAATATTTTAGAATAACTAAAGC-------AATCAAATATTTGTTCTGGCAAAGAAAA------------------ACCTTTTTACCCAAAATCTTCTTTTTGTACTAACTTTGAAGC-------------------
i calJac3.chr3             C 0 I 15
s mm10.chr8                 87656638 350 - 129401213 ACATAAGGGAT-ATGTGTACCTCTGGCAAGCTGCATTCTtctgacattagaatatcctccaaaaggctgatttgttaatcagatgctcttctttg--ttttagtcttattggTGAATTTAACTCACGTTCCAGTCCATGTCCCTCTTGTATTC-TATTTCCTTCCTGCA---------GGCGATAGCTGTTC--TGTGAGATGTTCTGAGTGCATTCATTTTCTCCAACTGATTAGGATTTTCCA------------AGATGTTTAAACAAAAAGAAAATAGGAGCTTTCCAAAGAACAAAAAGTAGTCAAATTCAAATATTTGCTTTGGCCAAG----------------------AACTTTTTACCAACAACATTCTTCTAGTCTTAAATAGAAAGC-------------------
i mm10.chr8                I 3183 I 15
s canFam3.chr16             17969006 401 -  59632846 ATATAAGGCATCACCTATAACTTCGGGCATGATCACTCTTGTGACATTAAAATATTTTCAACATAGTTAATTTGTTAATTAGATA-TTTAGTTTGATATTAAATATTATCGATGAATTAAAAGCACACTGCAGTTAACTACTTTCATACATTG-TTTTTTCTTCCCCCAAGCTATAGCAGCTATAGCTGTAC-------GACATGCTGATTGGATTCATGTCCTTTTGCTGCATATAACTGCCAGAACTTTATTATTAGATGCTTAAATGAGAAGAAAACAGAGTTTTTTAAAGAACTGGAAAC-------AATCAAATATTTGCTTTGGCaaaaaaaaaaaaaaaaaaaaaaaaagaaCATTTCACCCA-AACATTCTTTTAGTCCTAAATTCAAAGTTCAAAGTCAGCTACATGTC
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=2297.000000
s hg38.chr4_KI270925v1_alt    291416 4 +    555799 TTTG
s macFas5.chr5             189054104 4 + 189454096 TGTG
i macFas5.chr5             I 1 I 15
s papAnu2.chr5             178482864 4 + 178775436 TGTG
i papAnu2.chr5             I 1 I 15
s calJac3.chr3             190527121 4 - 190850796 AGTG
i calJac3.chr3             I 15 C 0
s mm10.chr8                 87657003 4 - 129401213 AGTG
i mm10.chr8                I 15 C 0
s canFam3.chr16             17969407 4 -  59632846 TTTG
i canFam3.chr16            C 0 I 4
e chlSab2.chr7             135428529 20 + 135778131 I
e rheMac3.chr5             183669899 20 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198072874 20 + 198332218 I
e panTro4.chr4             192988937 20 + 193495092 I

a score=141473.000000
s hg38.chr4_KI270925v1_alt    291420 60 +    555799 CTTTGCTtccttctccttccctg-----ccctctccctcttcccacctcccctcACCGTagacag
s panTro4.chr4             192988957 60 + 193495092 CTTTGCTTCCTTCTCCTTCCTTG-----CCCTCTCCCTCTTCCCACCTCCCCTCACCGTagacag
i panTro4.chr4             I 20 C 0
s ponAbe2.chr4             198072894 60 + 198332218 CTTTGCTTCCTTCTCCTTCCGTA-----CCCTCTCCCTCATCCCACCTCCCCTCATCGTagacag
i ponAbe2.chr4             I 20 C 0
s rheMac3.chr5             183669919 60 + 184069350 CTTTGcttccttctccttcccta-----ccctctccctcttcccacctcccctcACTGTAGACAG
i rheMac3.chr5             I 20 C 0
s macFas5.chr5             189054123 60 + 189454096 CTTTGCTtccttctccttcccta-----ccctctccctcttcccacctcccctcactGTagacag
i macFas5.chr5             I 15 C 0
s papAnu2.chr5             178482883 60 + 178775436 Ctttgcttccttctccttcccta-----ccctctccctcttcccacctcccctcactgtagacag
i papAnu2.chr5             I 15 C 0
s chlSab2.chr7             135428549 60 + 135778131 CTTTGCTtccttctccttcccta-----ccctctccctcttcccacctcccctcactGTAGacag
i chlSab2.chr7             I 20 C 0
s calJac3.chr3             190527125 53 - 190850796 TTTTGCTTCCTTCTGCTTCCT------------ACCCTCTTCTCACTTCCCCTCATCCTGGACAG
i calJac3.chr3             C 0 I 441
s mm10.chr8                 87657007 53 - 129401213 TTTTGATTCCCTTGTTCTCCCAG-----------CCTCAATTCCAGACCTCCTCATTCCAGACA-
i mm10.chr8                C 0 C 0
s canFam3.chr16             17969415 57 -  59632846 CTTAGATTTCTTCTCCTACCTCACTGCCCCCTCTAGCCACCCCAACCCTCCCTCCCC--------
i canFam3.chr16            I 4 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=387946.000000
s hg38.chr4_KI270925v1_alt    291480 168 +    555799 acagacag----------------------acacgcacacacacaCTTTCTG-----GGCAATAAAAGCACACAGAAAATAAAAATAAAGGTTCAAAATGTGTTATCTCAACACTAACAATATGTGTGATTCCCGAAAAAGGCAGGTGTTGGG-ACAGAAACAGTGCTGATG-CTTTCAAACTTGAGTCTGTGTCAC
s panTro4.chr4             192989017 176 + 193495092 acagacagacagac--------------acacaCGCACACACACACTTTCTG-----GGCAATAAAAGCACACAGAAAATAAAAATAAAGGTTCAAAATGTGTTATCTCAACACTAACAATATGTGTGATTCCCGAGAAAGGCAGGTGTTGGG-ACAGAAACAGTGCTGATG-CTTTCAAACTTGAGTCTGTGTCAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198072954 177 + 198332218 acagacagacagac--------------agacagacaCCCACACATTTTCTT-----GGCAATAAAAGGACATAGAACATAAAAATGAAGGTTCAAAATGTGTTATCTCAACACTAACAATATGTGTCATTCCAGAGAAAGGCAGGTGTTGGG-ACAGAAACAGTGCTGATGATTTTCAAACTTGAGTCTGTGTCGT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183669979 179 + 184069350 GCAGacagacagacag------------acacacacacacacacacacacac-----GGCAATAAAAGGACACAGAAAATAAAAATGAAGGTTCAAAATGTGTTATCTCAACACTAACAATATGTGTCATTCCAGAGAAAGGCAGGTGTTGGG-ACAGAAACAGTGCTGATGCTTTTCAAACTTGAGCCTATGTCAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189054183 190 + 189454096 gcagacaggcagacagacagacagacacacacacacacacacacacacacac-----GGC-ATAAAAGGACACAGAAAATAAAAATGAAGGTTCAAAATGTGTTATCTCAACACTAACAATATGTGTCATTCCAGAGAAAGGCAGGTGTTGGG-ACAGAAACAGTGCTGATGCTTTTCAAACTTGAGCCTATGTCAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178482943 183 + 178775436 gcagacagacagacagacag--------acagacacacacacacacacacac-----ggcaataaaaggacacagaaaataaaaatgaaggttCAAAATGTGTTATCTCAACACTAACAATATGTGTCATTCCAGAGAAAGGCAGGTGTTGGG-ACAGAAACAGTGCTGATGCTTTTCAAACTTGAGTCTGTGTCAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135428609 171 + 135778131 acagacag--------------------acacacacacacacatacacacac-----GGCAATAAAAGGACACAGAAAATAAAAATGAAGGTTCAAAATGTGTTATCTCAACACTAACAATATGTGTCACTCCAGAGAAAGGCAGGTGTTGGG-ACAGAAACAGTGCTGATGCTTTTCAAACTTGAGTCTGTGTCAT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190527619 166 - 190850796 ----------------------------acacacacacacacacacacacTCTTTTTGGCAATAAAAGGATGCCGGCAATAAAAATGAAGGCTCAATATGTGTTATCTCAACACTAACAATATGTGTCATTCCAGAGACAGGCAGGTTTTGGG-ACAGAA--AGTGCTGATGCATTTCAAACTTGAGTCTGTGTCAT
i calJac3.chr3             I 441 C 0
s mm10.chr8                 87657060  80 - 129401213 -----------------------------CAGACATACACCCATTATTGCAC--------------------------ATATGAATACAGATTTAACAGGT--------------------------------AGAGAGAG--------------------CAGTCC----------CAGGTTTGAGTCCCTGTTTC
i mm10.chr8                C 0 I 43
s canFam3.chr16             17969472 164 -  59632846 ---------------------------CCCACACACACACTTTTAATGTCTT-----GGCAATAAAAGGAGGAAGAACAT-TAAATGAAGGTTTGAAATATGTCATCCCAACACTAACAATATGTGTTACTCCAGAGAAAGCCAGGTGGTGGACACAGACACAGAGCTGCTACCCTTCAAACTTGAGACTTCATCAT
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=449782.000000
s hg38.chr4_KI270925v1_alt    291648 192 +    555799 CATAGGTGAATCTGGGAAAAGATGCTTCCCACCACCAAAGAGAATGCCAGGAAACAGCCAGTGTCTCCGTGGGCACGGTGGG-----------------------------------------------------------------------------------------------TTCTAGCTGTATT-------CTCAGAGCCTTTTTCCCTCCATGCACAGAAACACTTCATAAAGAATAAGCACGAATGGAAACAACAACAGTGGTTGATAGTTCCTTCTGTTATTTGC
s panTro4.chr4             192989193 192 + 193495092 CATAGGTGAGTCTGGGAAAAGATGCTTCCCACCACCAAAGAGAATGCCAGGAAACAGCCAGTGTCTCTGTGGGCACGGTGGG-----------------------------------------------------------------------------------------------TTCTAGCTGTATT-------CTCAGAGCCTTTTTCCCTCCATGCACAGAAACATTTCATAAAGAACAAGCATGAATGGAAACAACAACAGTGGTTGATAGTTCCTTCTGTTATTAGC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198073131 286 + 198332218 CATAGGTGAATCTGGGAAAAGATACTTCCCACCACCAAAGAGAATACCAGGAAACAACCAGTGTCTCCGTGGGCATGGTGGGTTCTAGCTGCATTCTTAAAACAGCCAGCGTCTCCGTGGGCATGGTTGGGTCTAGCTGCATTCTCAAACAGCCAGTGTCTCTGTGGGTATGGTGGATTCTAGCTGCATT-------CTCAGAGCCTTTTTCCCT-CATGCACAGAAACATTTCATAAAGAATAAGCATGAACGGAAACAACGCGAGAGGTTGATAGTTCCTTCTGTTATTTGC
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183670158 192 + 184069350 CATAGGGGAATCTGGGAAAAGATGCTTCCCACCACCAAAGAGAATGCCAGGAAACAACCAGCATCTCCGTGGACACGGTGGG-----------------------------------------------------------------------------------------------TTCTAGCTGCATT-------CTTAGGGTCTTTTTCCCTCCATGCGCAGAAACATTTTGTAAAGAATAAGCATGAATGGCAACAATGCCAGGGGTTGATAGTTCCTCCTGTTATTTGC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189054373 192 + 189454096 CATAGGGGAATCTGGGAAAAGATGCTTCCCACCACCAAAGAGAATGCCAGGAAACAACCAGCATCTCCGTGGACACGGTGGG-----------------------------------------------------------------------------------------------TTCTAGCTGCATT-------CTTAGAGTCTTTTTCCCTCCATGCGCAGAAACATTTTGTAAAGAATAAGCATGAATGGTAACAAGGCCAGGGGTTGATAGTTCCTCCTGTTATTTGC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178483126 192 + 178775436 CATAGGGGAATCTGGGAAAAGATGCTTCCCACCACCAAAGAGAAGGCCAGGAAGCAACCAGCATCTCCGTGGACACGGTGGG-----------------------------------------------------------------------------------------------TTCTAGCTGCATT-------CTTAGAGTCTTTTTCCCTCCATGCGCAGAAACACTTTGTAAAGAATAAGCATGCATGGCAACAATGCCAGGGGTTGATAGTTCCTCCTGTTATTTGC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135428780 191 + 135778131 CATAGGGGAATCTGGGAAAAGATGCTTCCCACCACCAAAGAGAATGCCAGGAAACAGCCAGCATCTCCGTGGACTCGGTGGG-----------------------------------------------------------------------------------------------TTCTAGCTGCATT-------CTTAGAGTCTTTTTCCCTCCATGCACAGAAACATTTTGTAAAGAATAAGCATG-ATGGCAACAACGCCAGGGGTTGATAGTTCCTCTTGTTATTTAC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190527785 186 - 190850796 CATGGGTGAATCT-GGAAAAGACGCTTCCCACCATCAAAGAGAAGGCCAGGAAACAACCATTGTCTCCGTGGGCATGGTGGGC----------------------------------------------------------------------------------------------CTCTAGCTGCATT-------CTCAGAGCCTCTATTCCTCCAGG--CAGACACATTTAGTGAAGAATAA-CATGAAAGGACACGAGGCC-GGGGCTGGTAGTT--TGCTGTTACTTGC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17969636 198 -  59632846 CATAAGGGAATCTGAGAAAAGATGCTTCCCACGGCCAAACAGAACACCAGGAAACAATCAG--TCTTGGTAAGCATGGTGAGC----------------------------------------------------------------------------------------------TTCTTGCTGCATTAATCTGCCTCAGAGCCCTTTATTCCCTGTGCACAGAAACATTTAGTGAAGAACAAGAATGAAAGGAAATTATACCAGGGTTTGATGGTCCATTCTGTCATTTGG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87657140  43 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=584108.000000
s hg38.chr4_KI270925v1_alt    291840 226 +    555799 CTCTTCTTTTTGCTATCAGTT------TAAGATGGGAAAGTCTACCTACATTTTTAACAAAATATCAGTAG-AAAAA-----AAAAACAACAGAAAAAGAAACAGAGTTCTCTCCAGCCTCTCAGAAGGG-CT-GCAGTGACTGGCATAGTAAAT-----TATGGGAAAGTTCCACATTGTGGCTCAGCATGCCCAAGAACAAAGCCATGGACAGTTTTTCACAAGAGAAATCT---CA--GGGAATAGG
s panTro4.chr4             192989385 227 + 193495092 CTCTTCTTTTTGCTGTCAGTT------TAAGATGGGAAAGTCTACTTAAATTTTTAACAAAATATCAGTAGAAAAAA-----AAAAACAACAGAAAAAGAAACAGAGTTCTCTCCAGCCTCTCAGAAGGG-CT-GCAGTGACTGGCATAGTAAAT-----TATGGGAAAGTTCCACATTGTGGCTCAGCATGTCCAAGAACAAAGCCATGGACAGTTTTTCACAAGAGAAATCT---CA--GGGAATATG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198073417 205 + 198332218 CTCTTCTTTTTGCTATCAGTT------TAAGATGGGAAAGTCTACCTACATTTTTTAC--------------AAAAG-----AAAA-----AGAAAAAGAAACAGAGTTCTCGCCAACCTCTCAGAAGGG-CT-GCAGTGACTGGCGTGGTAAAT-----TATGGGAAAGGTCCACACTGTGGCTCAACATCTCCAAGAAAAGAGCCA---ACAGTTTTTCACAAGAGAAATAT---CA--GGGAATACG
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183670350 229 + 184069350 CTCTTCTTTTTGCTATCAGTT------TAAGATGGGAAAGTCTACCTAAATTTTTTACAAAATATCAGTAGGAAAAATTTT-AAAA--AGCAGAAAAAGAAACAGAATTCTCTCCAGCCTCTCAGAAGGG-CT-GCAGTGACGGGCGTGGTAAAT-----GATGGGAAAGGTCCACGTTGTGGCTCAGCATCTCCAAGAACAAAGCCATGGACAGTTTATCACACGAGAAAGCT---CA--GGGAATATG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189054565 229 + 189454096 CTCTTCTTTTTGCTATCAGTT------TAAGATGGGAAAGTCTACCTAAATTTTTTACAAAATATCAGTAGGAAAAATTTT-AAAA--AGCAGAAAAAGAAACAGAATTCTCACCAGCCTCTCAGAAGGG-CT-GCAGTGACGGGCGTGGTAAAT-----GATGGGAAAGGTCCACATTGTGGCTCAGCATCTCCAAGAACAAAGCCATGGACGGTTTTTCACATGAGAAAGCT---CA--GGGAATATG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178483318 229 + 178775436 CTCTTCTTTTTGCTATCAGTT------TAAGATGGGAAAGTCTACCtaaattttttacaaaatatcagtaggaaaaatttt-aaaa--agcagaaaaagaaacagaattctcTCCAGCCTCTCAGAAGGG-CT-GCAGTGACGGGCGCGGTAAAT-----GATGGGAAAGGTCCACATTGTGGCTCAGCATCTCCAAGAACAAAGCCATGGACAGTTTTTCACACGAGAAAGCT---CA--GGGAATATG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135428971 230 + 135778131 CTCTTCTTTTTGCTATCAATT------TAAGATGGGAAAGTCTACCTACATTTTTTACAAAATATCAGTAGGAAAAATTTTAAAAA--AGCAGAAAAAGAAACAGAATTCTCTCCAGCCTCTCAGAAGGG-CT-GCAGTGACTGGCGTGGTAAAT-----GATGGGAAAGGTGCACATTGTGGCTCAGCATCTCCAAGAACAAAGCCATGGACGGTTTTTCACACGAGAAAGCT---CA--GGGAATACG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190527971 220 - 190850796 CTC-TCATTTTGCAATCAGTT------TAAGATGGGAAAGCCTACCTACATTTTTTACAAAATATCAGTAGA----------AAAA--AATGGAAAAAGAAACAGCGTTCTCTCCAGCCTCTCAGAAGGG-CT-GCAATGAGCGGGGTGGTAAAT-----TACGGGGAAGTCACACATTGTGGCTCAGCATCTCCAAGAACAAAGCCAGGGACAGGTTTTCACAAGAGAAATCT---CA-GGGGAATATA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87657183 199 - 129401213 CTTTTCTTTT----------------------------------------TTTTTATCAAAATATCAGTATAAAAGA-----AAGAAAAGGGGAAATAAAGATGGACTTCTCTCCGGGCTCTCCAAAGGGCCC-ACAATGACTGTTATGGTAAATTGCTCTACAGGAAAGGGATGTA-TGTGGCTCAGCATCT-CAAGACCCAAACCACTGCAACTTTTCCTCAAGGGACATCA---CAAGGGGGATATG
i mm10.chr8                I 43 C 0
s canFam3.chr16             17969834 234 -  59632846 CTCTTCTTTTTGCAATCAGCTCAAAAATGAGATGGGAAACTCTACTTGCTTCTTTTGCAAAATATCAGTATG----------AAAA--AGCAGAGAAAGACACAGTGTTCTCTCCAGGCTCTCAGGAGAG-CTGGCAATGACTGTTGTGGTAAATTACTCTACAGAAAACGTACGC-TTGTGGCTCAGCATTTTCAAGAACAAAGTCATAGAAAGTTTTTCTCCAGGGAAATCATGGCA--GGGAGGAGG
i canFam3.chr16            C 0 I 139
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=224249.000000
s hg38.chr4_KI270925v1_alt    292066 106 +    555799 AGCAGATTATATAGCACAAAACATGCCACAGCCTCAACAATGTTTTC-AGCCCTGAAACAAGTAACAGGACAATAGGGTTGTTGGAAAGCTT-AGAGTCTAATCTTGA
s panTro4.chr4             192989612 107 + 193495092 AGCAGATTATATAGCACAAAACATGCCACAGCCTCAACAATGTTTTTGAGCCCTGAAACAAGTAACAGGACAATAGGGTTGTTGGAAAGCTT-AGAGTCTAATCTTGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198073622 107 + 198332218 AGCAGATTATATAGCACAAAAGATGCCACAGCCTCAATGATGTTTTTGAGCCCTGAAACAAGTAACAGGACAATAGGGTTGTTGGAAAGCTT-AGAGTCTAATTTTAA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183670579 104 + 184069350 AGCAGATTATATAACACAAAACATGCCACGGCCTCAACAGTATTTTTCAGCCCTGAAACAAGTAACAGGACAACAG-GTTGTTGGAAAGCTT---AGTCTAATCTTGA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189054794 104 + 189454096 AGCAGATTATATAGCACAAAACATGCCACGGCCTCAACAGTGTTTTTCAGCCCTGAAACAAGTAACAGGACAACAG-GTTGTTGGAAAGCTT---AGTCTAATCTTGA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178483547 104 + 178775436 AGCAGATTATATAGTACAAAACATGCCACGGCCTCAACAGTATTTTCCAGCCCTGAAACAAGTAACAGGACAACAG-GTTGTTGGAAAGCTT---AGTCTAATCTTGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135429201 100 + 135778131 AGCAGATTATATAACACAAAACATGCTACGGCCTCAACAGTGTTTCTCAGCCCTGAAACAAGTAACAGGACAACAGCGTTGTTGGAAAGCTT---AGTCTAAT-----
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190528191  95 - 190850796 AGTAGATAATATAACACAAGACACGCCACAGCCGCAAAAA------------CTGAAACAAGTAGCAGGGCAATGCGGCTTTTGGGAGGCTT-AGAGTCTAGTCTTGA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87657382 107 - 129401213 AGCAGAGCACAGAGCACAAATAGCATCACAGCCTCTGAAAGGCTTTG-AGCATCAACACATGTGGCATGACAATACAGTTGTTAAAAGTGTTGGGGGTCTAGTCTTGA
i mm10.chr8                C 0 I 27
e canFam3.chr16             17970068 139 -  59632846 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=746464.000000
s hg38.chr4_KI270925v1_alt    292172 348 +    555799 TTCTAAAACATGTAATATGgtcatgtgccc--catgacgtctcagtcgatgacagaccacatgtacaacagtggtctcgtaagattatagtactgtatttttattgtaccttttctatgtttagatacacaaatacttaccattgtgttacaactgcctacagtattcagtacagtaccctgct------gcttgcagcttaggagcaatagactttatcatacagcttaggtgtgtgagaggctctaccatcctggtttatgcaaagacactctatgatatttgcacaatgacgaaatcacctaaggacacatttctcagagcaaatcctggtcattaagctacacatgactgTA
s panTro4.chr4             192989719 348 + 193495092 TTCTAAAACATGTAATATGgtcatgtgccc--catgacgtctcagtcgatgacagaccacatgtacaacagtggtctcgtaagattatagtactgtaattttattgtaccttttctatgtttagatacacaaatacttaccattgtgttacaactgcctacagtattcagtacagtaccctgct------gcttgtagcttaggagcaatagactttatcatacagattaggtgtgtgagaggctctaccatcctggtttatgcaaggacactctatgatgtttgcacaatgatgaaatcacctaaggacacatttctcagagcaaatcctggtcattaagctacacatgactgTA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198073729 348 + 198332218 TTCTAAAACATGTAATATGgtcatgtgccc--catgacgtctcagtcaatgacagaccacatgtacaacagtggtctcttaagattatagtactgtatttttattgtaccttttctatatttagatacacaaatacttaccattgtattacaactgcccacagtactcagtacagtaccctgct------gtttgtagcttaggagcaatagactttatcatacagcttaggtgtgtgagaggctctaccatcttggtttatgcaaggacactctacgatgtttgcacaatgatgaaatcacctaaggacacatttcccagaacaaatcctggtcattaagctacacatgactgTA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183670683 345 + 184069350 TTCTAAAGCATGTAATATGgtcatgggccc--catgacgtctcagtcaatgtcagaccacgtgtacgacagt-gtctcatacgattatagtactgtatttttattgtaccttttctatgtttagatacgcaaatacttaccattgtgttacagctgcctacagtactcagtacagtaacctgct------gtttgtagctttggagcgacagac--tatcccacagcttaggtgtggaagaggctctgccatcctggtttatgcaaggacaccctatgatgtttgcacaatgatgaaatctcctgaggacacagttctcagaacaaatcctggccattaagctacacatgactgTA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189054898 345 + 189454096 TTCTAAAGCATGTAATATGgtcatgggccc--catgacgtctcagtcagtgtcagatcacatgtacgacagt-gtctcatacgattatagtactgtatttttattgtaccttttctatgtttagatacgcaaatacttaccattgtgttacagctgcctacagtactcagtacagtaacctgct------gtttgtagctttggagcgacagac--tatcccacagcttaggtgtggaagaggctctgccatcctggtttatgcaaggacaccctatgatgtttgcacaatgatgaaatctcctgaggacacagttctcagaacaaatcctggccattaagctacacatgactgTA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178483651 345 + 178775436 TTCTAAAGCATGTAATATGGTCATGGGCCC--CAAGACGTCTCAGTCAATGTCAGACCACATGTACGACAGT-GTCTCATACGATTATagtactgtatttttattgtaccttttctatgtttagatacgcaaatacttaccattgtgttacagctgCCTACAGTACTCAGTACAGTAACCTGCT------GTTTGTAGCTTTGGAGCGACAGAC--TATCCCACAGCTTAGGTGTGGAAGAGGCTCTGCCATCCTGGTTTATGCAAGGACAccctatgatgtttgcacaatgatgaaatctcCTGAGGACACAGTTCTCAGAACAAATCCTGGCCATTAAGCTACACATGACTGTA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135429301 338 + 135778131 ---TAAAGCATGTAATATGgtcatgggccc--catgacgtc----tcaatgtcagaccacatgtacaacagt-gtctcgtatgattatagtgctgtatttttattgtaccttttctatgtttagatacacaaatacttaccattgtgttacagctgcctacagtactcagtacagtaacctgct------gtttgtagctttagagcaacagac--tatcccacagcttaggtgtggaagaggctctgccatcctggtttatgcaaggacaccctatgatgtttgcacattgatgaaatctcctgaggacacagttctcagaacaaatcctggccatgaagctacacgtgactgTA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190528286 349 - 190850796 TTCCGACACAGGTCATGTGgtcacgtgcccgtaatggcgtctcagccgatgataggccacatgtacagcagt-ggtccgtaagattagagcactgtatttttattgtaccttttctatgtctagatacacaaatacttaccattgtgttataactgcctccagtattcagtagagtcacctgctgtacaggtttgtagcttacgagcaatagacattatcatccagcttaggtgtgtaagaggctccaccctctgggtttgtgcaaggacactct--gatgtttgcac---gatgaagtcacctaaggacacatttctcagaacatgtcct-atcatcaaactacacgtgactgTA
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87657489  27 - 129401213 I
e canFam3.chr16             17970068 139 -  59632846 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=1881706.000000
s hg38.chr4_KI270925v1_alt    292520 758 +    555799  
s panTro4.chr4             192990067 758 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198074077 782 + 198332218  
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183671028 757 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189055243 757 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178483996 757 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135429639 758 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190528635 761 - 190850796  
i calJac3.chr3             C 0 I 10
s mm10.chr8                 87657516 722 - 129401213  
i mm10.chr8                I 27 C 0
s canFam3.chr16             17970207 866 -  59632846  
i canFam3.chr16            I 139 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=40467.000000
s hg38.chr4_KI270925v1_alt    293278 15 +    555799 AATGCTGAAATGGGA
s panTro4.chr4             192990825 15 + 193495092 AATGCTGAAATGGAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198074859 15 + 198332218 AATACTGAAATGGGA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183671785 15 + 184069350 AACGCTGAAATGGGA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189056000 15 + 189454096 AACGCTGAAATGGGA
i macFas5.chr5             C 0 I 8
s papAnu2.chr5             178484753 15 + 178775436 AACGCTGAAATGGGA
i papAnu2.chr5             C 0 I 8
s chlSab2.chr7             135430397 15 + 135778131 AATGCTGAAATGGGA
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87658238 15 - 129401213 GCTGCTGAACTGGGA
i mm10.chr8                C 0 C 0
s canFam3.chr16             17971073 15 -  59632846 AATGCTGAAATAAGA
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190529396 10 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=7580.000000
s hg38.chr4_KI270925v1_alt    293293 6 +    555799 GGAGGC
s panTro4.chr4             192990840 6 + 193495092 GGAGGC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198074874 6 + 198332218 GGAGGC
i ponAbe2.chr4             C 0 I 2
s rheMac3.chr5             183671800 6 + 184069350 GGAGGC
i rheMac3.chr5             C 0 I 2
s chlSab2.chr7             135430412 6 + 135778131 GGAGGC
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87658253 6 - 129401213 GGAGCT
i mm10.chr8                C 0 C 0
s canFam3.chr16             17971088 6 -  59632846 AGGGAT
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190529396 10 - 190850796 I
e papAnu2.chr5             178484768 8 + 178775436 I
e macFas5.chr5             189056015 8 + 189454096 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=3276.000000
s hg38.chr4_KI270925v1_alt    293299 1 +    555799 T
s panTro4.chr4             192990846 1 + 193495092 T
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198074882 1 + 198332218 T
i ponAbe2.chr4             I 2 C 0
s rheMac3.chr5             183671808 1 + 184069350 T
i rheMac3.chr5             I 2 C 0
s macFas5.chr5             189056023 1 + 189454096 T
i macFas5.chr5             I 8 C 0
s papAnu2.chr5             178484776 1 + 178775436 T
i papAnu2.chr5             I 8 C 0
s chlSab2.chr7             135430418 1 + 135778131 T
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87658259 1 - 129401213 T
i mm10.chr8                C 0 C 0
s canFam3.chr16             17971094 1 -  59632846 T
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190529396 10 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=2800.000000
s hg38.chr4_KI270925v1_alt    293300 1 +    555799 G
s panTro4.chr4             192990847 1 + 193495092 G
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198074883 1 + 198332218 G
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183671809 1 + 184069350 G
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189056024 1 + 189454096 G
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178484777 1 + 178775436 G
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135430419 1 + 135778131 G
i chlSab2.chr7             C 0 I 24
s mm10.chr8                 87658260 1 - 129401213 G
i mm10.chr8                C 0 C 0
e canFam3.chr16             17971095 0 -  59632846 C
e calJac3.chr3             190529396 10 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=7455.000000
s hg38.chr4_KI270925v1_alt    293301 5 +    555799 AGGGC
s panTro4.chr4             192990848 5 + 193495092 AGGGC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198074884 5 + 198332218 AGGGC
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183671810 5 + 184069350 AGGGC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189056025 5 + 189454096 AGGGC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178484778 5 + 178775436 AGGGC
i papAnu2.chr5             C 0 C 0
s mm10.chr8                 87658261 5 - 129401213 TGAAC
i mm10.chr8                C 0 I 554
e canFam3.chr16             17971095 0 -  59632846 C
e calJac3.chr3             190529396 10 - 190850796 I
e chlSab2.chr7             135430420 24 + 135778131 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=10998.000000
s hg38.chr4_KI270925v1_alt    293306 13 +    555799 CGTCCAGACAAGC
s panTro4.chr4             192990853 13 + 193495092 CGTCCAGACAAGC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198074889 13 + 198332218 CATCCAGACAAGC
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183671815 13 + 184069350 GGTCCACACGTGC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189056030 13 + 189454096 GGTCCACACATGC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178484783 13 + 178775436 AGTCCACACGTGC
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87658266 554 - 129401213 I
e canFam3.chr16             17971095  0 -  59632846 C
e calJac3.chr3             190529396 10 - 190850796 I
e chlSab2.chr7             135430420 24 + 135778131 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=4230.000000
s hg38.chr4_KI270925v1_alt    293319 9 +    555799 CACATGCTA
s panTro4.chr4             192990866 9 + 193495092 CACATGCTA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198074902 9 + 198332218 CAGATGCTA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183671828 9 + 184069350 CAGATGCTA
i rheMac3.chr5             C 0 C 0
e mm10.chr8                 87658266 554 - 129401213 I
e canFam3.chr16             17971095 0 -  59632846 C
e calJac3.chr3             190529396 10 - 190850796 I
e chlSab2.chr7             135430420 24 + 135778131 I
e papAnu2.chr5             178484796 0 + 178775436 C
e macFas5.chr5             189056043 0 + 189454096 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=2697.000000
s hg38.chr4_KI270925v1_alt    293328 12 +    555799 ACGAAGGCGGGA
s ponAbe2.chr4             198074911 12 + 198332218 ATGAAGGCAGGA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183671837 12 + 184069350 ACGAAAGCAGGA
i rheMac3.chr5             C 0 I 2
e mm10.chr8                 87658266 554 - 129401213 I
e canFam3.chr16             17971095  0 -  59632846 C
e calJac3.chr3             190529396 10 - 190850796 I
e chlSab2.chr7             135430420 24 + 135778131 I
e papAnu2.chr5             178484796  0 + 178775436 C
e macFas5.chr5             189056043  0 + 189454096 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192990875  0 + 193495092 C

a score=3467.000000
s hg38.chr4_KI270925v1_alt    293340 51 +    555799 ACGCCGCGGGGTGAACAGATGCTAAGGAAGGCGGGAGCGCGGCGGGGTGAA
s ponAbe2.chr4             198074923 51 + 198332218 GCATGGTGGGGTGAACAGATGCTAACGAAGGCAGGAATGTGGCGGGGTGAA
i ponAbe2.chr4             C 0 I 120
e mm10.chr8                 87658266 554 - 129401213 I
e canFam3.chr16             17971095  0 -  59632846 C
e calJac3.chr3             190529396 10 - 190850796 I
e chlSab2.chr7             135430420 24 + 135778131 I
e papAnu2.chr5             178484796  0 + 178775436 C
e macFas5.chr5             189056043  0 + 189454096 C
e rheMac3.chr5             183671849  2 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192990875  0 + 193495092 C

a score=0.000000
s hg38.chr4_KI270925v1_alt    293391 1089 +    555799  
e mm10.chr8                 87658266  554 - 129401213 I
e canFam3.chr16             17971095    0 -  59632846 C
e calJac3.chr3             190529396   10 - 190850796 I
e chlSab2.chr7             135430420   24 + 135778131 I
e papAnu2.chr5             178484796    0 + 178775436 C
e macFas5.chr5             189056043    0 + 189454096 C
e rheMac3.chr5             183671849    2 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198074974  120 + 198332218 I
e panTro4.chr4             192990875    0 + 193495092 C

a score=2375.000000
s hg38.chr4_KI270925v1_alt    294480 27 +    555799 ACGAAGGCGGGAGCGCGGCGGGGTGAA
s panTro4.chr4             192990875 27 + 193495092 ACGAAGGCAGGAGCGTGGCGGGGTGAA
i panTro4.chr4             C 0 C 0
e mm10.chr8                 87658266 554 - 129401213 I
e canFam3.chr16             17971095  0 -  59632846 C
e calJac3.chr3             190529396 10 - 190850796 I
e chlSab2.chr7             135430420 24 + 135778131 I
e papAnu2.chr5             178484796  0 + 178775436 C
e macFas5.chr5             189056043  0 + 189454096 C
e rheMac3.chr5             183671849  2 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198074974 120 + 198332218 I

a score=8651.000000
s hg38.chr4_KI270925v1_alt    294507 36 +    555799 CAGATGCTGACGAAGGCGGGAGCGCGGCGGGGTGAA
s panTro4.chr4             192990902 36 + 193495092 CAGATGCTGACGAAGGCGGGAATGTGGCGGGGTGAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198075094 36 + 198332218 CAGATGCTAATGAAGGCAGGAGTGTGGTGGGGTGAA
i ponAbe2.chr4             I 120 C 0
e mm10.chr8                 87658266 554 - 129401213 I
e canFam3.chr16             17971095  0 -  59632846 C
e calJac3.chr3             190529396 10 - 190850796 I
e chlSab2.chr7             135430420 24 + 135778131 I
e papAnu2.chr5             178484796  0 + 178775436 C
e macFas5.chr5             189056043  0 + 189454096 C
e rheMac3.chr5             183671849  2 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=70657.000000
s hg38.chr4_KI270925v1_alt    294543 93 +    555799 CAGATGCTAAGGAAGGCGGGAGCGCGGCGGGGTGAAGCACAAGGATGTGACTGAGAAGACGAAGTCGCTGTTGGAGAATATGGTGACTTTGAC
s panTro4.chr4             192990938 93 + 193495092 CAGATGCTAATGAAGGCGGGAACGTGGCGGGGTGAAGCACAAGGATGTGACTGAGAAGACGACGTCGCTGTTGGAGAATATGGTGACTTTGAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198075130 93 + 198332218 CAGGTGATAATGAAGGCAGCAACGTGGCGGGCTGAAGCACAAGGAGATGACTGAGAAGATGATGTCACTCTTGGAGAATATGATGACTTTGAC
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189056043 93 + 189454096 CAGATGCTAACGAAAGCAGGAGCGTGGTGGGGCGAAGCACAAGGAGGTGGCTGAGAAGATGATGTCACTCTTGGAGAATGTGGTGACTCTGAC
i macFas5.chr5             C 0 T 121
s papAnu2.chr5             178484796 93 + 178775436 CAGATGCTAACCAAAGCAGGAGCGTGGTGGGGCGAAGCACAAGGAGGTGGCTGAGAAGATGATGTCACTCTTGGAGAATGTGGTGACTCTGAC
i papAnu2.chr5             C 0 T 121
e mm10.chr8                 87658266 554 - 129401213 I
e canFam3.chr16             17971095  0 -  59632846 C
e calJac3.chr3             190529396 10 - 190850796 I
e chlSab2.chr7             135430420 24 + 135778131 I
e rheMac3.chr5             183671849  2 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=7538.000000
s hg38.chr4_KI270925v1_alt    294636 30 +    555799 TGAGAAGGCGACGTCACTCTTGGAGAATAT
s panTro4.chr4             192991031 30 + 193495092 TGAGAAGGCAACGTCACTCTTGGAGAATAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198075223 30 + 198332218 TGAGAAGACGATGTCACTCTTGGGGAATAT
i ponAbe2.chr4             C 0 C 0
e mm10.chr8                 87658266 554 - 129401213 I
e canFam3.chr16             17971095  0 -  59632846 C
e calJac3.chr3             190529396 10 - 190850796 I
e chlSab2.chr7             135430420 24 + 135778131 I
e papAnu2.chr5             178484889 121 + 178775436 T
e macFas5.chr5             189056136 121 + 189454096 T
e rheMac3.chr5             183671849  2 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=2000.000000
s hg38.chr4_KI270925v1_alt    294666 2 +    555799 GG
s panTro4.chr4             192991061 2 + 193495092 GG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198075253 2 + 198332218 GG
i ponAbe2.chr4             C 0 I 12
s macFas5.chr5             189056015 2 + 189454096 GG
i macFas5.chr5             T 121 C 0
s papAnu2.chr5             178484768 2 + 178775436 GG
i papAnu2.chr5             T 121 C 0
e mm10.chr8                 87658266 554 - 129401213 I
e canFam3.chr16             17971095 0 -  59632846 C
e calJac3.chr3             190529396 10 - 190850796 I
e chlSab2.chr7             135430420 24 + 135778131 I
e rheMac3.chr5             183671849 2 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=546.000000
s hg38.chr4_KI270925v1_alt    294668 1 +    555799 A
s panTro4.chr4             192991063 1 + 193495092 A
i panTro4.chr4             C 0 C 0
s macFas5.chr5             189056017 1 + 189454096 A
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178484770 1 + 178775436 A
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87658266 554 - 129401213 I
e canFam3.chr16             17971095 0 -  59632846 C
e calJac3.chr3             190529396 10 - 190850796 I
e chlSab2.chr7             135430420 24 + 135778131 I
e rheMac3.chr5             183671849 2 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198075255 12 + 198332218 I

a score=3205.000000
s hg38.chr4_KI270925v1_alt    294669 4 +    555799 GGCC
s panTro4.chr4             192991064 4 + 193495092 GGCC
i panTro4.chr4             C 0 C 0
s macFas5.chr5             189056018 4 + 189454096 GGCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178484771 4 + 178775436 GGCT
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190529406 4 - 190850796 GGCC
i calJac3.chr3             I 10 C 0
e mm10.chr8                 87658266 554 - 129401213 I
e canFam3.chr16             17971095 0 -  59632846 C
e chlSab2.chr7             135430420 24 + 135778131 I
e rheMac3.chr5             183671849 2 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198075255 12 + 198332218 I

a score=12658.000000
s hg38.chr4_KI270925v1_alt    294673 25 +    555799 GTGAGGGCCGTCCAAACACAACAGT
s panTro4.chr4             192991068 22 + 193495092 GTGAGGGCCGTCCAAACACA---GG
i panTro4.chr4             C 0 C 0
s macFas5.chr5             189056022 25 + 189454096 GTGAGGGCGGTCCACACATGCCAGA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178484775 25 + 178775436 GTGAGGGCAGTCCACACGTGCCAGA
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190529410 23 - 190850796 GGGAGGGCG--TCAGACACAGCAGG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17971095 25 -  59632846 GCAAAGGCTGTCCAAATACAGTGAA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87658266 554 - 129401213 I
e chlSab2.chr7             135430420 24 + 135778131 I
e rheMac3.chr5             183671849  2 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198075255 12 + 198332218 I

a score=19743.000000
s hg38.chr4_KI270925v1_alt    294698 19 +    555799 --TGCTAAAGAAGGCAGGAGT
s panTro4.chr4             192991090 19 + 193495092 --TGCTAAAGAAGGCAGGAGT
i panTro4.chr4             C 0 C 0
s macFas5.chr5             189056047 19 + 189454096 --TGCTAACGAAAGCAGGAGC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178484800 19 + 178775436 --TGCTAACCAAAGCAGGAGC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135430444 19 + 135778131 --TGCTAATGAAAGCAGGAGC
i chlSab2.chr7             I 24 C 0
s calJac3.chr3             190529433 19 - 190850796 --TGCTGACTGAGGCGGAAGC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17971120 21 -  59632846 TACTTTAATAAATATGGGAAC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87658266 554 - 129401213 I
e rheMac3.chr5             183671849  2 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198075255 12 + 198332218 I

a score=43333.000000
s hg38.chr4_KI270925v1_alt    294717 33 +    555799 GTGGTGGGGTGAAGCACAAGGAGGTGACTGAAG
s panTro4.chr4             192991109 33 + 193495092 GTGGTGGGGTGAAGCACAAGGAGGTGACTGAAA
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183671851 29 + 184069350 GTGGTGGGGCGAAGCACAAGGAGGTGGCT----
i rheMac3.chr5             I 2 C 0
s macFas5.chr5             189056066 29 + 189454096 GTGGTGGGGCGAAGCACAAGGAGGTGGCT----
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178484819 29 + 178775436 GTGGTGGGGCGAAGCACAAGGAGGTGGCT----
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135430463 29 + 135778131 GTGGTGGGGCGAAGCACAAGGAGATGGCT----
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190529452 31 - 190850796 -CGGCGGGACTTAGCACCAGG-GATGGCTGAGA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17971141 33 -  59632846 ATTATAGAATTgagcacaaggagacaatttaga
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87658266 554 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198075255 12 + 198332218 I

a score=279104.000000
s hg38.chr4_KI270925v1_alt    294750 178 +    555799 GACGACGTCACTCTTGGAGAATATGGTGACTTTGACCGAGAAGACGACG-TCGTTCTTGGAGAATATGGTGACTCTGACGGCTGAGATT------CTGTGAtgcccgggaagccgtgcagctgctcattct-cattgtacatttatga-g-aaaaaagcaaatgaaaaaaaaTTAATCCAGAACTTAC
s panTro4.chr4             192991142 174 + 193495092 GACGACGTCACTCTTGGAGAATATGGTGACTTTGACTGAGAAGACG----TCACTCTTGGAGAATATGGTGACTCTGACGGCTGAGATG------CTGTGAtgcccgggaagccgtgcagctgctcattct-cattgtacatttatga-g-aaaaaagcaaatgaaaaaaA-TTAATCCAGAACTTAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198075267 176 + 198332218 GACGACGTCACTCTTGGAGAATATGGTGACTTTGACTGAGAAGACGACG-TCACTCTTGGAGAATATGGTGACTCTGACGGCTGAGATG------CTGTGAtgcccaggaagccgtgcagctgctcattct-aattgtacttttatga-g-aaaaaaacaaatgaaaaaaa--aAGTCCAGAACTTAC
i ponAbe2.chr4             I 12 C 0
s rheMac3.chr5             183671880 140 + 184069350 -------------------------------------GAGAAGATGATG-TCACTCTTGGAGAATGTGGTGACTCTGACAGCTGAGATG-------TGTGAtgcccaggaagctgtgcagctgctcgttct-aattgtacatttatga-g-aaaaaaggaaatgaaaaaaaaTTAATCCAGAACTTAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189056095 140 + 189454096 -------------------------------------GAGAAGATGATG-TCACTCTTGGAGAATGTGGTGACTCTGACAGCTGAGATG-------TGTGAtgcccaggaagctgtgcagctgctcgttct-aattgtacatttatga-g-aaaaaaggaaatgaaaaaaaattaatccggaacttac
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178484848 139 + 178775436 -------------------------------------GAGAAGATGATG-TCACTCTTGGAGAATGTGGTGACTCTGACAGCTGAGATG-------TGTGATGCCCAGGAAGCTGTGCAGCTGCTCGTTCT-AATTGTacatttatga-g-aaaaaaggaaatg-aaaaaaattaatccgGAACTTAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135430492 140 + 135778131 -------------------------------------GAGAAGATGATG-TCACTCTTGGAGAATGTGGTGACTCTGAGAGCTGAGATG-------TGTGAtgcccaggaagctgtgcagctgctcgttct-aattgtacatttatga-g-aaaaaaggaaatgaaaaaaaattaatccggaacttac
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190529483 139 - 190850796 ----ACAGGACTTT--------------------------------------ACTCTTGGGGAA-ATGGTGACTTTGATAGATGAGGAG-TAGCATCGCGATGCC---ACAGCTGTGCAGCTGCTCACTCT-AATTGTACATGTGTGAGG-AAAAAAGCCAATGAAAAAAAATTAATCCAGAAGTTAT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17971174 139 -  59632846 -------------------------------------------acactgctttccctttgaatccatagttcttatggttgctaaaaagattctattaaagtgcccaagaaaccctgcagctgatcattctaaattctacttttatga-gaaaaaaagtaaatgaAA-----TTAATCCAGAAATTAT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87658266 554 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=149432.000000
s hg38.chr4_KI270925v1_alt    294928 47 +    555799 TTAAGGGAACACAATATGGTAGAATCAGCCAAAAACCTACATTTAAA
s panTro4.chr4             192991316 47 + 193495092 TTAAGGGAACACAATATGGTAGAATCAGCCAAAAACCTACATTTAAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198075443 47 + 198332218 TTAAGGGAACACAATACGGTAGAATCAGCCAAAAACCTACATTTAAA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183672020 47 + 184069350 TTAAGGGAACACAATATGGTAGAATCAGCCAAAAACCTACATTGAAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189056235 47 + 189454096 ttaagggaacaCAATATGGTAGAATCAGCCAAAAACCTACATTGAAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178484987 47 + 178775436 TTAAGGGAACACAATATGGTAGAATCAGCCAAAAACCTACATTGAAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135430632 47 + 135778131 ttaagggaacaCAATATGGTAGAATCAGCCAAAAACCTACATTGAAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190529622 45 - 190850796 TTAAGGGA--ACAACATGGTAGAATCAGCCAAAACCCCGCATTTAGA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87658820 46 - 129401213 TTAAGGGTACACATTATGGCAGACTCAA-CAAAAATCCACATCTAGA
i mm10.chr8                I 554 I 168
s canFam3.chr16             17971313 47 -  59632846 TTAAAGGAATACATTATAGTAGGAACAGTCATAAATCAACATCTAAA
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=7531.000000
s hg38.chr4_KI270925v1_alt    294975 4 +    555799 GTAT
s panTro4.chr4             192991363 4 + 193495092 GTAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198075490 4 + 198332218 GTAT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183672067 4 + 184069350 GTAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189056282 4 + 189454096 GTAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178485034 4 + 178775436 GTAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135430679 4 + 135778131 GTAT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190529667 4 - 190850796 GCAT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17971360 3 -  59632846 -TTT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87658866 168 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=256142.000000
s hg38.chr4_KI270925v1_alt    294979  99 +    555799 AGGAGAGTAAGTTGTAATGGTGGACTTGAAATAGTAAGGAAAGCTTGTATTATCATCTGTTTACTAAAGCAGAAAGGGAGTGTAACAATAGTTTTTAAA------------------------
s panTro4.chr4             192991367  99 + 193495092 AGAAGAGTAAATTGTAATGGTGGACTTGAAATAGTAAGGAAAGTTTGTATTATCATCTGTTTACTAAAGCAGAAAGGGAGTGTAACAATAGTTTTTAAA------------------------
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198075494  99 + 198332218 AGGAGAATAAGTTGTAATGGTGGACTTGAAATAGTAAGAAAAGTTTGGATTATCATCTCTTTACTAAAGCAGAAAGGGAGTGTAACAATAGTTTTTAAA------------------------
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183672071  98 + 184069350 AGGAGAGTAAGTTGTAATGGTGGACTTGAAGCAGTAAGAAAAGTTTGGATTATCATCCGTTTACTAAAGCAGAAAAGGAGTGTAA-AATAGTGTTTAAA------------------------
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189056286  98 + 189454096 AGGAGAGTAAGTTGTAATGGTGGACTTGAAGCAGTAAGAAAAGTTTGGATTATCATCCGTTTACTAAAGCAGAAAAGGAGTGTAA-AATAGTGTTTAAA------------------------
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178485038  98 + 178775436 AGGAGAGTAAGTTGTAATGGCGGACTTGAAGTAGTAAGAAAAGTTTGGATTATCATCCGTTTACTAAAGCAGAAAAGGAGTGTAA-AATAGTGTTTAAA------------------------
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135430683  99 + 135778131 AGGAGAGTAAGTTGCAATGGTGGACTTGAAGTACTAAGAAAAGTTTGGATTATCATCTGTTTACTAAAGCAGAAAAGGAGTGTAACAATAGTGTTTAAA------------------------
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190529671  96 - 190850796 AGGAGCAGCAGTTGTGATTGTGGACTCGAAATAGTAAGAAAAGTTTGGATTGTCATCTGTTTACTAAAGCAGAAGAGGAGTGT---AATAGTTTTTTAG------------------------
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87659034  96 - 129401213 agaagaagaagaagaagaaACAAACCTGAAACACCAATAACAGCTTAGATTATCCT---GTTACTAAAGAGGGAATGGTGTGCAATATTGGCTTTGAAA------------------------
i mm10.chr8                I 168 C 0
s canFam3.chr16             17971363 120 -  59632846 -ATAGAATAAATGATAATGGTGGATCTGAAACATCAAGAAAATTTTAGATCACCCTCTGTTTACTAAGACAGAAAAATA-TATAA-TATAGTTTTAAAATGTCAATCAAAAATCATTTTTAAg
i canFam3.chr16            C 0 I 113
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=299534.000000
s hg38.chr4_KI270925v1_alt    295078 172 +    555799 TATCAATG-------------------------------------------AAAAATCCTTGG---AAAAAC----ATATCAGTGC-CAGTGTTGAGACACAGTC-----AGAAAAATA-GGTCACCTCAGACGTGT------------------------------------------------------------------------------GAAT---AGGCTCAG-CAAAGCCTAACAGAAAA-------------------------------------------------------------------------------------------------------------TTCTGTCACCTCATAAAGTACTTTTCAATTGCAGAGGTCAAAGTGCTT------CTTACATTTAGTACA
s panTro4.chr4             192991466 172 + 193495092 TATCGATG-------------------------------------------AAAAATCCTTGG---AAAAAC----ATATCAGTGC-CAGTGTTGAGACACAGTC-----AGAAAAATA-GGTCACCTCAGATGTGT------------------------------------------------------------------------------GAAT---AGGCTCAG-CAAAGCCTAACAGAAAA-------------------------------------------------------------------------------------------------------------TTCTGTCACCTCATAAAGTACTTTTCAATTGCAGAGGTCAAAGTGCTT------CTTACGTTTAGTACA
i panTro4.chr4             C 0 I 3
s ponAbe2.chr4             198075593 172 + 198332218 TATCAATG-------------------------------------------AAAAATCCTTGG---AAAAAC----ATATCAGTGT-TAGTGTTGAGACACAGTC-----AGAAAAATA-GGTCGCCTCAGACGTGT------------------------------------------------------------------------------GAAT---AGGCTCAG-CAAAGCCTAACAGAAAA-------------------------------------------------------------------------------------------------------------TTCTGTCACCTCATAAAGTACTTTTCAATTGCAGAGGTCAAAGTGCTT------CTTACATTTAGTACA
i ponAbe2.chr4             C 0 I 3
s rheMac3.chr5             183672169 174 + 184069350 TATCAATG-------------------------------------------AAAAATCCATGG---AAAAAT----ACATCAGTGC-TAGGGCTGAGACACGGTC-----CGAAAAATAGGGTCACCTCAGATGTGT------------------------------------------------------------------------------GAAT---GGGCACAG-CAAAGCCCAGCTGAGAA------------------------------------------------------------------------------------------------------------CTTCTGCCACCTCATAAAGTGCTTTTCAATTGCAGAGGTCAAAGTGCGT------CTTATATTTAGTACA
i rheMac3.chr5             C 0 I 2
s macFas5.chr5             189056384 174 + 189454096 TATCAATG-------------------------------------------AAAAATCCGTGG---AAAAAT----ACATCAGTGC-TAGGGCTGAGACACGGTC-----CGAAAAATAGGGTCACCTCAGATGTGT------------------------------------------------------------------------------GAAT---GGGCACAG-CAAAGCCCAGCTGAGAA------------------------------------------------------------------------------------------------------------CTTCTGCCACCTGATAAAGTGCTTTTCAATTGCAGAGGTCAAAGTGCGT------CTTATATTTAGTACA
i macFas5.chr5             C 0 I 2
s papAnu2.chr5             178485136 172 + 178775436 TATCAATG-------------------------------------------AAAAATCCGTGG---AAAAAT----ACATCAGTGC-TAGCGCTGAGACACAGTC-----CGAAAAATAGGGTCACCTCAGATGTGT------------------------------------------------------------------------------GAAC---GGGCACAG-CAAAGCCCGGCTGAGAA------------------------------------------------------------------------------------------------------------CTTCTGCCACCTCAT-AAGTGCTTTTCAACTGCAGAGGTCAAAGTGCGT------CTTACA-TTAGTaca
i papAnu2.chr5             C 0 I 3
s chlSab2.chr7             135430782 174 + 135778131 TATCAATG-------------------------------------------AAAAATCCGTGG---AAAAAT----ATATCAGTGC-TAGCATTGAGACACAGTC-----AGAAAAATAGGGTCACCTCAGATGTGT------------------------------------------------------------------------------GAAT---AGGCACAG-CAAAGTCCAGCTGAGAA------------------------------------------------------------------------------------------------------------CTTCTGCCACCTCATAAAGTGCTTTTCAATTGCAGAGGTCAAAGTGCTT------CTTATATTTAGTACA
i chlSab2.chr7             C 0 I 2
s calJac3.chr3             190529767 160 - 190850796 TAACAATC-------------------------------------------AAAAATCCTTGG---AAAAAC----ATTCCAGCGC-TAGTGCTGAGAAAGGATC-----GGAAAAGTA-GGTCATCTGAGA---------------------------------------------------------------------------------------------AACAG-CAAAGCCAAACTGAGAAG-----------------------------------------------------------------------------------------------------------CTTCTGTGACTTCATAAAGTAC-CTTCAACTGCAGA-GTCGAAGTGCTT------CTCACACACAGTGCA
i calJac3.chr3             C 0 I 1728
s mm10.chr8                 87659130 185 - 129401213 TGTCAATC-------------------------------------------CAAAATAGTTGGGGTAAAAATTGGGATGTTAGT----AGTGTTACTATGCAATC-----AGAAAAATA-GGCCAAACCACATGTAT------------------------------------------------------------------------------CCTTTCCAGGCTCAT-GGGTATATAATTGGGAAA-----------------------------------------------------------------------------------------------------------CTTCAA--ACCTAATCAAGTGCTTTACAGGTGCAAAGGACGAGATGCTCGCTGGATTTGTAGTTAACACC
i mm10.chr8                C 0 I 1
s canFam3.chr16             17971596 408 -  59632846 tacctatgtctctgcctctctctgtcactcatgaataaataaaATCTTTTTAAAAATCATTTT---TAAAAA----ACATCAGTACTTAGAGTTGAAGTACTGATGTTGAAGAAAAATA-GGTCATC-CACATATGTTATAGGCATCTAAACTGTATAACTGAGCAACTTCTATATACAttttttaaagattttatttatttattcatgagagagggag---aggcagagacacaggccgagggagaagcaggctccatgcagggagcccgatgcgggactcaatccctggaccccaggatcacaccctgggctaaaggcaggcgctcaactgctgagccaccaggcatccTGCAACTTCTATATTCTAATAATGTGTTCTTCATTTATAGAAATCAAGGTGATT------TTTGTATTTGATATG
i canFam3.chr16            I 113 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=11297.000000
s hg38.chr4_KI270925v1_alt    295250 7 +    555799 TGTGTTT
s panTro4.chr4             192991641 7 + 193495092 TGTGTGT
i panTro4.chr4             I 3 C 0
s ponAbe2.chr4             198075768 7 + 198332218 TATGTGT
i ponAbe2.chr4             I 3 C 0
s rheMac3.chr5             183672345 6 + 184069350 -GTGTGT
i rheMac3.chr5             I 2 C 0
s macFas5.chr5             189056560 6 + 189454096 -GTGTGT
i macFas5.chr5             I 2 C 0
s papAnu2.chr5             178485311 7 + 178775436 tgtgtgt
i papAnu2.chr5             I 3 C 0
s chlSab2.chr7             135430958 6 + 135778131 -GTGTGT
i chlSab2.chr7             I 2 C 0
s mm10.chr8                 87659316 5 - 129401213 --TGTGG
i mm10.chr8                I 1 I 3
s canFam3.chr16             17972004 7 -  59632846 TGGGTCT
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190529927 1728 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=928264.000000
s hg38.chr4_KI270925v1_alt    295257 433 +    555799  
s panTro4.chr4             192991648 439 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198075775 432 + 198332218  
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183672351 420 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189056566 419 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178485318 429 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135430964 431 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190531655 424 - 190850796  
i calJac3.chr3             I 1728 C 0
s mm10.chr8                 87659324 443 - 129401213  
i mm10.chr8                I 3 I 332
s canFam3.chr16             17972011 406 -  59632846  
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=451799.000000
s hg38.chr4_KI270925v1_alt    295690 210 +    555799 GCCCTGAG----GGGTGAGGGGAAGGCCAGACC----------------------------------TGTACTCTGTACATTACAAGTACCCACctctctctctctttctctctttccttccttctctctctcCCCATTTTTAGCACACAGTTTGTTCAGACTCCTGACCCCCCACCACCAGTCACAGGCGTGGCATGGCATAGCCTCATAGATTAATTACATTCATCCCCACTAAATTCTGCATTGT
s panTro4.chr4             192992087 209 + 193495092 GCCCTGAG----GGGTGAGGGGAAGGCCAGACC----------------------------------TGTACTCTGTACATTACAAGTACCCTCctctctctctctt-ctctctttccttccttctctctctcCCCATTTTTAGCACACAGTTTGTTCAGACTTCTGACCCCCCACCACCAGTCACAGGCATGGCATGGCGTAGCCTCATAGATTAATTACATTCATCCCCACTAAATTCTGCATTGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198076207 209 + 198332218 ACCCCAAG----GGGTGAGGGGAAGGCCAGACC----------------------------------TGTACTCTGTACGTTACAAGTACCCACctctctctctctt-ctctctctccttccttctctctctcCCCATGTTTAGCACACGGTTTGTTCAGACTCCTGACCCCCAACCACCAGTCACAGGCATGGTATGGCATAGCCTCATAGAGTAATTAGATTCATCCCCACTAAATTCTGCATTGT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183672771 203 + 184069350 ACCCTAAG----GGGTGAGGGGAAGGTTAGCCC----------------------------------TCTACTCTGTACGTTACAAGTAGCCACctctctgtcttt--ctctctctccctccttctctctctcCCCATTTTTAGCACACAGTTTGTTCAGACTCCTGACCCCCCACCACCAGTCACAGGC-----ATGGTGTAGCCTCATAGATGAATTAGATTCATCCCCACCAAATTCTGCATTGT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189056985 203 + 189454096 ACCCTAAG----GGGTGAGGGGAAGGTTAGCCC----------------------------------TCTACTCTGTACGTTACAAGTAGCCACctctctgtcttc--ctctctctccctccttctctctctcCCCATTTTTAGCACACAGTTTGTTCAGACTCCTGACCCCCCCCCACCAGTCACAGGC-----ATGGTGTGGCCTCATAGATGAATTAGATTCATCCCCACCAAACTCTGCATTGT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178485747 202 + 178775436 ACCCTAAG----GGGTGAGGGGAAGGTTAGCCC----------------------------------TCTACTCTGTACGTTACAAGTAGCcacctctctgtcttt--ctctctctccctccttctctctctccccatttttAGCACACAGTTTGTTCAGACTCCTGA-CCCCCACCACCAGTCACAGGC-----ATGGTGTAGCCTCATAGATGAATTAGATTCATCCCCACTAAATTCTGCATTGT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135431395 203 + 135778131 ACCCTAAG----GGGTGAGGGGAAGGTTAGACC----------------------------------TCTACTCTGTACGTTACAAGTAGCCACctctctgtcttt--ctctttctccctccttctctctctcCCCATTTTTAGCACACAGTTTGTTCAGACTCCTGACCCCCCACCACCAGTCACAGGC-----ATGGTGTAGCCTCATAGATGAATTAGATTCATCCCCACTAAATTCCACATTGT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190532079 195 - 190850796 ATCCCG-G----GGATGAAGGGAAGGCTAGACC----------------------------------TGCACCCCGTGCATTACAAGCACCCGCctctctctctcct-ctctgtctccctc---ctctctctcCCCATTTTCAGCACATGGTTTGTTCAGACTGCTGACCAGCCACCACCAATGACAGGC----------ACAGCCTCATAGAGTAATCAGATTCATACACGCTAAACCCTGCATCGT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17972417 240 -  59632846 GCCCTGAGCACCAGCTAAGCAGGAGGGCAAAACAAGTGGCCACTTCTGTTGTcttcccttttttctttcttcttccttccctccactcctctccctctttctatct--cccccttccccttctccttccttccctctctcTTAA-GCACAGTTTTCAGGGACTCTGGGCCACCCACTACCAAACACAGGA-----CTGGCACAGCCTCAAAGACTAGTTAGAGCCATGTTCACTGTATTATGCATTAG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87659767 332 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=530029.000000
s hg38.chr4_KI270925v1_alt    295900 208 +    555799 GCTCTGTGTGACAAT---CAATATAATAATGTG----CTTATATTCTTAGAAG--TTTTATACTCATGACAAATAAGATATTAATAGGAGTGGCTTCTGAAATCTGTGGTTGCACATCACAAAATACATCTGCAC-TTCCCCCGTTGTTAGTTACGTCTAATGATCTTTCCATGGTTTAAGTGAGCATTTCTGTTGGTGTTGGCATTGGGG-TTAGAAC
s panTro4.chr4             192992296 208 + 193495092 GCTCTGTGTGACAAT---CAATATAATAATGTG----CTTATATTCTTAGAAG--TTTTATACTCATGACAAATAAGATATTAATAGGAGTGGCTTCTGAAATCTGTGGTTGCACATCACAAAATACATCTGCAC-TTACCCCGTTGTTAGTTACGTCTAATGATCTTTCCATGGTTTAAGTGAGCATTTCTGTTGGTGTTGGCATTGGGG-TTAGAAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198076416 208 + 198332218 GCTCTGTGTGACAAT---CAATATAGTAATGTG----CTTATATTCGTAGAAG--TTTTATACTCATGACAAATAAGGTATTAATAGGAATGGCTTCTGAAATCTGTGGTTGCACATCACAAATTACAACTGCAT-TTCCCCTGTTGTTAGTTAGGTCTAATGATCTTTCCATGGTTTCAGTGAGCATTTCTGTTGGTGTTGGCATCGGGG-TTAAAAC
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183672974 208 + 184069350 GCTGTCTGTGACAAT---CAATGTAATAATGTG----CTTATATTCGTAGAAG--TTTCATACTCATGACAAATAAGATATTAATAGGAATAACTTCTGAAATCTGTGGTTGCACATCACAAATTACATCTGCAT-TTCCCCTGTTGTTAGTTACGTCTAATGACTTTTCCATGGTTTCAATAAGCATTTGTGTTGGTGTTAGCATTGGTG-TTAGAAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189057188 208 + 189454096 GCTCTCTGTGACAAT---CAATGTAATAATGTG----CTTATATTCGTAGAAG--TTTCATACTCATGACAAATAAGATATTAATAGGAATAACTTCTGAAATCTGTGGTTGCACATCACAAATTACATCTGCAT-TTCCCCTGTTGTTAGTTACGTCTAATGACTTTTCCATGGTTTCAATGAGCATTTGTGTTGGTGTTAGCATTGGTG-TTAGAAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178485949 197 + 178775436 GCTCTCTGTGACAAT---CAATGTAATAATGTG----CTTATATTCGTAGAAG--TTTCATACTCATGACAAATAA-----------GAATAACTTCTGAAATCTGTGGTTGCACATCTCaaattacatctgcat-ttcccCCGTTGTTAGTTACGTCTAATGACCTTTCCACAGTTTCAATGAGCATTTGTGTTGGTGTTAGCATCGGTG-TTAGAAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135431598 208 + 135778131 GCTCTCTGTGACAAT---CAATGTAATAATGTG----CTTATATTTGTAGAAG--TTTTATACTCATGACAAATAAGATATTAATAGGAATAACTTCTGAAATCTATGGTTGCACATCACAAATTACATCTGCAT-TTCCCCCATTGTTAGTTACGTCTAATGACTTTTCCATGGTTTCAATGAGCATTTGTGTTGGTGTTAGCATTGGTG-TTAGAAC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190532274 203 - 190850796 GCTCTGTGTGACAAT---AAATATAATAATGTG----CTTCTACTCACGTAAG--TTTTACACTCACGACAAATAAGATATTAATAGGAATAGCTTCTCAAATCTGTGGCTGCACATCATAAATCACATCTGCTT-GTACCTTGTTGTTAGTTACTTACAATGTTCTTTTTATGTTTTCAATGGGCCTTTGCTCTGGTGTCAGCGTCAGTG-TT-----
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87660099 211 - 129401213 ACTCCAGTCACCAAT---TAAAAGCATGACATGGTCTCTCAGATTAAT--AAA--TTTTACATCCAATGGATGCAAGATATTAAAAGGAATAGCTTCTCAAATTTGTGAAGCTACATCTTAAGTTACCATAGTGTCTTTCCTTGTTAATAATTATTTCTGACATTCTTTTGATCACTACTAT-AGTCTTTGTGTCAGCATACACATCCGTGATCATATC
i mm10.chr8                I 332 C 0
s canFam3.chr16             17972657 206 -  59632846 --TCTCTATAGTTATACAAAGAATAATAATATG----CTCATATTCATATAAACCTTGTATGCTCAAGATAAATAAGATCTTAGCAGGAATAGCTTCCCAAATCTGTG-----ATATCACAAGTTATATCTGCAT-TTTCCTTGTTACTAGTAGTTTGCAAAGTTCTTTCCATCATTTCAATGAGTATTTGTGTTAATTTTAGAATTTGTG-TTAGAAT
i canFam3.chr16            C 0 I 206
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=1300467.000000
s hg38.chr4_KI270925v1_alt    296108 482 +    555799  
s panTro4.chr4             192992504 482 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198076624 483 + 198332218  
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183673182 480 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189057396 480 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178486146 478 + 178775436  
i papAnu2.chr5             C 0 M 696
s chlSab2.chr7             135431806 478 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190532477 481 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87660310 443 - 129401213  
i mm10.chr8                C 0 C 0
s canFam3.chr16             17973069 501 -  59632846  
i canFam3.chr16            I 206 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=716229.000000
s hg38.chr4_KI270925v1_alt    296590 288 +    555799 TCATGACTGTC-AAAGCAAAGGAGCGAAGTCGGAACTATTTTTGCTGTAGAGATAGCCAGCCTTCAGGAAGGGCCATGTTTCCCAGTAATTTAATCTGAAAGACATAAATCATGAC-GAAAATCTCCCTGCATTAGTAATGGAGAGAAATACCTGCATTCTAGCAAGGTTTGCATGATAAAAGACAGGTTTTCATACATCTGAGATCAGGAAAAATAATTATCAATCAAAGATAACCCCCTGCATCCTCGTTTGAAGTGAAATTGGAGGTCAGCGGAGGCCAAG-TAAAAG
s panTro4.chr4             192992986 288 + 193495092 TCATGACTGTC-AAAGCAAAGGAGCGAAGTCGGAACTCTTTTTTCTGTAGAGATAGCCAGCCTTCAGGAAGGGCCATGTTTCCCAGTAATTTAATCTGAAAGACATAAATCATGAT-GAAAATCTCCTTGCATTAGTAATGGAGAGAAATACCTGCATTCTAGCAAGGTTTGCATGATAAAAGACAGGTTTTCATACATCTTAGATCAGGAAAAATAATTATCAATCAAAGATAACCCCCTGCATCCTCGTTTGAAGTGAAATTGGAGGTCAGCGGAGGCCAAG-AAAAAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198077107 289 + 198332218 TTGTGACTGTC-AAAGCGAAGGAGCGAAGTCGGAACTCCTTTTGCTGTAGGGATAGCCACCCTTCAGGAAGGGCCGTGATTCCCGGTAATTTAATCTGAAAGATATAAATCATGAC-GAAAAGCTCCCTGCATTAGTAATGGAGAGAAATACCTGCATTCTAGCAAGGTTTTCATGATAAAAGACAGGTTTTCATACATCTGAGATCAGGAAAAATAATTATCGATCAAAGATAACCCCCTGCATCCTCATTTGAAGTGAAATTGGAGGTCAGCGGAGGCCAAGAAAAAAG
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183673662 287 + 184069350 TCGTGGCTGCC-GAAGCGAAGGAGTGAAGTCGGAACTATTTTTGCCGTAGAGATAA-CAGCCTTCAGGAAGGGCCATGTTGCCCAGTAATTTAATCTGAAAGATACAAATCATGAC-GAAAAGCTCCCTGCATTAGTAATGGAGAGAAATACCTACATTCTAGCAAGGTTTTCATGACAAAAGACAGGTTTTCATACATCTGAGATCAGGAAAAATAATTGTCAATCGAAGACAACCCCCTGGATCCTGGTTTGAAGTAAAATTGGAGGTCGGCGAAGGCCAAG-AGAAAA
i rheMac3.chr5             C 0 I 1
s macFas5.chr5             189057876 287 + 189454096 TCGTGGCTGCC-GAAGCGAAGGAGTGAAGTCGGAACTATTTTTGCCGTAGAGATAA-CAGCCTTCAGGAAGGGCCATGTTGCCCAGTAATTTAATCTGAAAGATACAAATCATGAC-GAAAAGCTCCCTGCATTAGTAATGGAGAGAAATACCTACATTCTAGCAAGGTTTTCATGACAAAAGACAGGTTTTCATACATCTGAGATCAGGAAAAATAATTGTCAATCGAAGACAACCCCCTGGATCCTCGTTTGAAGTAAAATTGGAGGTCGGCGAAGGCCAAG-AGAAAA
i macFas5.chr5             C 0 I 1
s chlSab2.chr7             135432284 285 + 135778131 TGGTGGCTGCC-GAAGCGAAGGAGTGAAGTCGGAACTATTTTTGCTGTAGAGATAGCCAGCCTTCAGGAAGGGCCGTGTTGCCCAGTAATTTAATCTGAAAGATATAA--CATGAC-GAAAAGCTCCCTGCATTAGGAATGGAGAGAAATACCTACATTCTAGCAAGGTTTTCATGACAAAAGACAGGTTTTCATACATCTGAGATCAGGAAAAATACTTATCAATCAAAGACAA-CCCCTGGATCCTCGTTTGAAGTAAAATTGGAGGTCAGCGAAGGCCAAG-ACAAAA
i chlSab2.chr7             C 0 I 1
s calJac3.chr3             190532958 280 - 190850796 TTGTGACTGTC-AGCG---AGGAGCCGAGTTGGAACTATTTTTGCTGCAGAGGTAG----CCTTCAGGAAGGGCCGTGTTTCCCCGTATTTTAATCTGAAAGATAAAAATCATGACTGAAAAGCTCCCTGCATTAGTAATGGAGAGAAATGCCTACATTCTAGCAAGGTTTTCATGATACAAGACAGGTTTTCATACATCTGAGATCAGGGAAAATAATTATCAATCAAAGATAACCTCC--AATGCTGGTTTGAAGTAAGATTGGAGGTCGGTGAAAGCCAAG-ACAACA
i calJac3.chr3             C 0 I 1
s mm10.chr8                 87660753 287 - 129401213 CTATGAGTGTCAAAAGCAAAGGGGAAAGGTCT---CCTTATTTGCTATTGAGCTATCCAGCTTTTAGGAAGGGTCATGCTTCCTGGTAATTTAATCTGAAAGATAAAAATCATGACTGAAAACCTTCCTGAATTGGTAATGGAGAAAATTTTCTACATGCTAGAAAGGTCTTCATGATAAAAGGCAGGTTTTCATAAATATGAGATCAGGAGAAACAATTATCAATCAAAGATAACCCTCGTGATACCTGTTTGAAGTGAAATTGGAGGTCAGTATAGACCTGA-AACAGA
i mm10.chr8                C 0 I 2
s canFam3.chr16             17973570 290 -  59632846 TTATGGGTGTCAAAAACAAAGTAGCAAAGTCAGGACTATTTTTGCTGTGAAGATAGCCAGCCTTCACGAAGGGCCATGTTTCCCAGTAATTTAATCTGAAAGATATAAATCATGACTGAGAAGCTCCCTGCATCAGTAATGGAGAGAAATGCCTATATTCGAGCAAGTTTTCCGTGATAAAAGACAGGTTTCCATACATATGAGATCAGGAAAAACAATTATCAATCAAAGATAACCCCCTTGATACCTGTTTGAAGTGAAATTGGGGGTCAGCAAAGGCCAAA-AAGGAG
i canFam3.chr16            C 0 C 0
e papAnu2.chr5             178486624 696 + 178775436 M
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=1033150.000000
s hg38.chr4_KI270925v1_alt    296878 344 +    555799 AGAGGACTGGATTGTCTCTGCAATTTTAAGGAGCTCATTACTAGAAATGCTGTTTTACAAAGTTTCAGCTGTATGTGATTTTGAAACATTAATGATTTAATGCCTGCCAGACAAAGAAAGGGAAGGGATGTC-AAAAACCAAAAACAGGTATAACTGTATCATTGGCATGAAAATGGAGGCTGACATCATAATGAT---GAGAAATCACCCCAGGGCCAAAGTATGCCAACTGAAATCATAGCCAAACAC-AAATCTCCTGGTGCTTTGGAAGAATGCAACTGGAAATTGATAAGAGCAGAGGAATCTGTATTATCTGCTTCCCAGAGAATTGGGAGTTCACAGAGAAC
s panTro4.chr4             192993274 344 + 193495092 AGAGGACTGGATTGTCTCTGCAATTTTAAGGAGCTCATTACTAGACATGCTGTTTTACAAAGTTTCAGCTGTATGTGATTTTGAAACATTAATGATTTAATGCCTGCCAGACAAAGAAAGGGAAGGGATGTC-AAAAACCAAAAACAGGTATAACTGTATCATTGGCATGAAAATGGAGGCTGACAGCATAATGAT---GAGAAATCACCCCAGGGCCAAAGTATGCCAACTAAAATCATGGCCAAACAC-AAATCTCCTGGTGCTTTGGAAGAATGCAACTGGAAATTGATAAGAGCAGAGGAATCTATATTATCTGCTTCCCAGAGAATTGGGAGTTCACAGAGAAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198077396 344 + 198332218 AGAGGACTGGATTGTCTCTGCAATTTTAAGGAGCTCATTGCTAGAAATGCTATTTTACAAAGTTTCAGCTGTATGTGATTTCAAAACATTAATGATTCCATGCCTGCCAGACAAAGAAAGAGAAGGGATGTC-AAAAACCAAAAACAGGTATAACTGTATCATCAGCATGAAAATGGAGGCTGACATCATAATGAT---GAAAAATCACCCCAGGGCCAAAGTATGCGAACTGAAATCATGGCCAAACAC-AAATCTCCTGGTGCTTTGGAAGAATGCAACTGGAAATTGATGAGAGCAGAGGAATCTATACTATCTGCTTCCCAGAGAATTGGGAGTTCACAGAGAAC
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183673950 304 + 184069350 AGAGGACTGGATCGTCT----------------------------GGTGCTGTTTTACAAAGTTTCAGCTGTATGCGATTTTGAAAC---AATGATTTAATGCCTGCCAGACGAAGGAAGAG-AGGGATGTC-AAAAACCAAAAACAGGTACGACT--------GGCATGAAAATGGAGGCTGACATTATAATGAT---GAAAAATCACCCCAGGGCCAAAGTATGCGAACTGAAATAATGGCCAAACAC-AAATCTCATGGTGCTTCGGAAGAATACAACTGGAAATTGATGAAAGCAGAGTAATCTATACTATCTGCTTCCCAGAGAATTGGGAGTTCACAGAGAAC
i rheMac3.chr5             I 1 C 0
s macFas5.chr5             189058164 312 + 189454096 AGAGGACTGGATCGTCT----------------------------GGTGCTGTTTTACAAAGTTTCAGCTGTATGCGATTTTGAAAC---AATGATTTAATGCCTGCCAGACGAAGGAAGAG-AGGGATGTC-AAAAACCAAAAACAGGTACGACTGTATCATGGGCATGAAAATGGAGGCTGACATCATAATGAT---GAAAAATCACCCCAGGGCCAAAGTATGCGAACTGAAATAATGGCCAAACAC-AAATCTCATGGTGCTTCGGAAGAATACAACTGGAAATTGATGAAAGCAGAGTAATCTATACTATCTGCTTCCCAGAGAATTGGGAGTTCACAGAGAAC
i macFas5.chr5             I 1 C 0
s papAnu2.chr5             178487320 341 + 178775436 aGAGGACTGGATCGTCTCTGCAATTTTAAGGAGCTCATTACTAGAGATGCTGTTTTACAAAGTTTCAGCTGTATCCGATTTTGAAAC---AATGATTTAATGCCTGCCAGACGAAGGAAGAG-AGGGAtgtcaaaaaaccaaaaacaggtaTGACTGTATCATGGGCATGAAAATGGAGGCTGACATCATAATGAT---GAAACATCACCCCAGGGCCAAAGTATGCAAACTGAAATAATGGCCAAACAC-AAATCTCATGGTGCTTCGGAAGAATACAACTGGAAACTGATGAAAGCAGAGTGATCTATACTATCTGCTTCCCAGAGAATTGGGAGTTCACAGAGAAC
i papAnu2.chr5             M 696 C 0
s chlSab2.chr7             135432570 340 + 135778131 AGAGGAGTGGATCATCTCTGCAATTTTAAGGAGCTCATTACTAGAGATGCTGTTTTACAAAGTTTCAGCTGTATGTGATTTTGAAAC---AATGATTTAATGCCTGCCAGACAAAGGAAGAG-AGGGATGTC-AAAAACCAAAAACAGGTATGACTGTATCATGGGCATGAAAATGGAGGCTGACATCATAATGAT---GAAAAATCACCCCAGGGCCAAAGTATGTAAACTGAAACAATGGCCAAACAC-AAATCTCGTGGTGCTTCGGAAGAATACAACTGGAAATTGATGAAAGCAGAGTAATCTATACTATCTGCTTCCCAGAGAATTGGGAGTTCACAGAGAAA
i chlSab2.chr7             I 1 C 0
s calJac3.chr3             190533239 344 - 190850796 AGAAGACTGGATTGTCTCTGCAATTTTGAGGAGCTCATCCCTAGAAATACTGTCTTACAAAGTTTCAGCTGCATGTGATTTTGAAACATTAATGATTTAATGCCTGCCAGACGAAGAAACACAAGGGATGTC-AAAAACCAAAAGCAGGTATAACTGTCTCATCGGCATAAAAACGGAGGCTGACATCATGACAAT---GAAAAATCGTCCCAGGGCCAGAGTATGTAAACCGGAGTAATGTCCAAACAC-AAATCTCATAGTGCTTTGGAAGAATATCACTGGAAATCGATGAAAGAAGGGACATCTACACCATCTGCTCCCCAGAGGACAGAGAGTCCACAGAGAAC
i calJac3.chr3             I 1 C 0
s mm10.chr8                 87661042 341 - 129401213 -AAAGGTTGCGTCATCCCTGCACATTTAAGGAACTCGACACTAGACACTCTGTCTCCCAGAGCTTCAGCTGTATGTGATTTTGAAACATTAATGATTTAATGTCTGCCAGACAAAGAAAGAACAGGGTTGTCAAAAAATCAAAGACAGATACAACTGTATCATCAGCATAAAAATGGGGTCTGACATCATAATCATAAAAAAAAATCAGTCCAGAGAAAAAGTATGCAAACTAAAACCATTACCCAAAAG-GA------TAGTGTGTTGGAAAAATCCAACCAGCCATTGGTGGAAACAGAGGAACATGTAACATCTGATTGCCAGAGAACTGGGAGTTCACAGAGCAT
i mm10.chr8                I 2 I 17
s canFam3.chr16             17973860 345 -  59632846 AAAGAACTGAATTGTCTCTGCAATTTTAAGGAGCTCTTCACTAGATATTCTATTTTACAAAGTTTCAGCTGTATGTAATTTTGAAACATTAATGATTTAATGCCTGCCAGACAAAGAAAGAGAAAAGATGTC-AAAAATCAAAGACAGATATAACTGTATCATGAGCATAAAAATGGAGGCTGACATCATAATGAT---GAAAAATCAGTCCAGGGCAAAAGTATGCAAACTAAAATAATGGCCAAATGCGGAATCACACAGTGCCTTGGAAGACTACAACTGGCAATTGATGAAAACAGGAGTGTATTTGCCATCTGAAAGCCAGAAAATGAGGAGTTCAAGGAACAC
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=59073.000000
s hg38.chr4_KI270925v1_alt    297222 22 +    555799 AAAGTCAGTGGCCCCAGCAGAA
s panTro4.chr4             192993618 22 + 193495092 AAAGTCAGTGGCCCCAGCAGAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198077740 22 + 198332218 AAAGGCAGTGGCCCCAGCAGAA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183674254 22 + 184069350 AAAGTCAGTGGCCTTAGCAGAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189058476 22 + 189454096 AAAGTCAGTGGCCTTAGCAGAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178487661 22 + 178775436 AAAGTCAGTGGCCTTAGCAGAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135432910 22 + 135778131 AAAGTCAGTGGCCCTAGCAGAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190533583 22 - 190850796 AAAGTCAGTGGCCCTAGAAGAG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17974205 22 -  59632846 AAAGTCAGAAGCCCCAGAATGG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87661383 17 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=1215968.000000
s hg38.chr4_KI270925v1_alt    297244 457 +    555799 CCCTTTGCTATGCAAATAAGCTGGAACACTTACCCGAACACACTCTCTAAATCAAGATTACCTGTAATTCCTCTGTGCTGCAGCCTATAGGGCTGTAGAGGCTTAATCATATTTATTACCTAACCAATGAACACATGGG-CTGTTTGATCAGAAAGTAAATTTTGGCCCCACCTCACC--ATTCCTACAACATCATGCAAGACCAGTGAAG---TCCTGAGAACCTGGAAAGCCCTAATCTGCATTCAGTGACTGGTCTCTGACCAT---TTCTTTTGCCCGCACAACTGAG-------TAATGGAGGGACAAACAGCTTAAATTGTTAGCAACTACTAGACTATAAAATTCTTACTAAACAGTCA----------CTTTCTTGAAAGCTCAGACCATTTTTTATTCA------------ATTTTTGCAATTAGTAGAATTTGTCTCCC----TGGTGGTTTCTCAATTAAGATTAAATAGGGCCCTCAAAGATGCTGG
s panTro4.chr4             192993640 460 + 193495092 TCCTTTGCTATGCAAATAAGCTGGAACACTTACCCAAACACACTCTCTAAATCAAGATTACCTGTAATTCCTCTGTGCTGCAGCCTATAGGGCTGTAGAGGCTTAATCATATTTATTACCTAACCAATGAACACATGGG-CTGTTTGATCAGAAAGTAAATTTTGGCCCCACCTCACC--ATTCCTACAACATCATGCAAGACCAGTGAAGTCCTCCTGAGAACCTGGAAAGCCCTAATCCACATTCAGTGACTGGTCTCTGACCAT---TTGTTTTGCCCGGACAACTGAG-------TAATGGAGGGACAAACAGCTTAAATTGTTAGCAACTACTAGACTATAAAATTCTTACTAAACAGTCA----------CTTTCTTGAAAGCTCAGACCATTTTTTATTCA------------ATTTTTGCAATTAGTAGAATTTGTCTCCC----TGGTGGTTTCTCAATTAAGATTAAATAGAGCCCTCAAAGATGCTGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198077762 456 + 198332218 CCCTTTGCTATGCGAATAAGCTGGAACACTCACCCGAACGCACTCTCTAAATCAAGATTACCTGTAATTCCTCTGTGCTGCAGCCTATAGGGCTGTAGAGGCTTAATCATATTTATTACCTAACCAATGAACACATGGG-CTGTTTGACCAGAAAGTAAATTTTGGCCCCACCTCACC--ATTCCTACAACAGCATGCAAGACCAGTGAAG---TCTTGAGAACCTGGAAAGCCCTAATCCGCGTTCAGTGACTGGTCTCTGACCAT---TTGTTTTGCCCGGACAAATGAG-------TAATGGAGGAACAAACAGCTTAAATTGTTAGCAACTACTAGACTATAAAATTCTTACTGAACAGTCA----------CTTTCTTGAAAGTTCAGACCA-TTTTTATTAA------------ATCTTTGCAATTAGTAGAATTTGTCCCCT----TGGTGGTTTCTCAATTAAGATTAAATAGGGCCCTCAAAAATGCTGG
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183674276 468 + 184069350 CCCTTTGCCATGCAAATAAACTGGAACACTCATCCGAATGCACTCTCTGAATCAAGATTACCTGTAATTCCTCTGTGCTGCAGCCTATAGGGCTGTAGAAGCTTAATCATATTTATTACCCAACCAATGAACATATGGG-CTATTGGATCAGAAAGTAAATTTTGGCCCCAACTCACC--ATTCCTGCAACATCATGCAAGACCAGTGAAG---CCTTAGGAACCTGGAAAGCCC-AATATGCATTCAGTGACTGGTCTCTGAGCAT---TGGTTTTGCCCAGACAACTGAG-------TAATGGAGGAACAAAAAGCTTAAATTATTAGCAACTACCAGACTGTAAAATTCTTACTAAACAGTCA----------CTTCCTCGAAAGCTCAGACCattttttattaaattttttattacatttttGCGATTAGTAGAATTTGTCCACC----TGGTGGTTTCTGAATTAAGATTAAATAGGGACCTCAAAAAAGCTGG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189058498 468 + 189454096 CCCTTTGCCATGCAAATAAACTGGAACACTCATCCGAATGCACTCTCTGAATCAAGATTACCTGTAATTCCTCGGTGCTGCAGCCTATAGGGCTGTAGAAGCTTAATCATATTTATTACCCAACCAATGAACATATGGG-CTATTGGATCAGAAAGTAAATTTTGGCCCCAACTCACC--ATTCCTGCAACATCATGCAAGACCAGTGAAG---CCTTAGGAACCTGGAAAGCCC-AATATGCATTCAGTGACTGGTCTCTGAGCAT---TGGTTTTGCCCAGACAACTGAG-------TAATGGAGGAACAAAAAGCTTAAATTATTAGCAACTACCAGACTGTAAAATTCTTACTAAACAGTCA----------CTTCCTCGAAAGCTCAGACCattttttattaaattttttattacatttttGCGATTAGTAGAATTTGTCCACC----TGGTGGTTTCTGAATTAAGATTAAATAGGGACCTCAAAAAAGCTGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178487683 468 + 178775436 CCCTTGGccatgcaaataaactggaacaCTCATCCGAATGCACTCTCTGAATCAAGATTACCTGTAATTCCTCTGTGCTGCAGCCTATAGGGCTGTAGAAGCTTAATCATATTTATTACCCAACCAATGAACATATGGG-CTATTGGATCAGAAAGTAAATTTTGGCCCCAACTCACC--ATTCCTGCAACATCATGCAAGACCAGTGAAG---CCTTAGGAACCTGGAAAGCCC-AATATGCATTCAGTGACTGGTCTCTGAGCAT---TGGTTTTGCCCAGACAACTGAG-------TAATGGAGGAACAAAAAGCTTAAATTATTAGCAACTACCAGACTGTAAAATTCTTACTAAACAGTCA----------CTTCCTCGAAAGCTCAGaccattttttattaaattttttattacatttttgcgATTAGTAGAATTTGTTCACC----TGGTGGTTTCTGAATTAAGATTAAATAGGGACCTCAAAAAAGCTgg
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135432932 468 + 135778131 CCCTCTGCCATGCAGATAAACTGGAACACTCATCCGAATGCACTCTCTGAATCGAGATTACCTGTAATTCCTCTGTGCTGCAGCCTATAGGGCTGTAGAAGCTTAATCATATTTATTACCCAACCAATGAACATATGGG-CTATTGGATCAGAAAGTAAATTTTGGCCCCAACTCACC--ATTCCTGCAACATCGTGCAAGACCAGTGAAG---CCTTGGGAACCTGGAAAGCCC-AATATGCATTCAGTGACTGGTCTCTGAGCAT---TGCTTTTGCCCAGACAACTGAG-------TAATGGAGGAACAAAAAGCTTAAATTATTAGCAACTACCAGACTGTAAAATTCTTACTAAACAGTCA----------CTTCCTCGAAAGCTCAGACCattttttattaaattttttattaaatttttGTGATTAGTAGAATTTGTCCACC----TGGTGGTTTCTGAATTAAGATTAAATAGGGACCTCAAAAAAGCTGG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190533605 455 - 190850796 CCCTTTGCTATGCAAATAAGCTGGGACATCCATCCACATGTACTCGCTACATCAAGACTGTCTGTCACTCCTCCGTGCTGCAGCCAATAGGGCTGTGGAAGCTTAGTCATATTTATTACCTAACCCATGAACATATGGG-CTCTTTGATCAGAAAGTAACTTTTGGCCCCAACTCGCC--ATTCCTACAACGTCGTTCAAGACCAGCGAAG---TGTTGAGAACCTGGAAGGTTCTAATGTGCATTCAGTGACTGCTCTCTGAGCCT---TTGTTTTGCCCAGAC-ACTGGG-------TTATGGAGGAACAAAAGGCTTACATTGTTAGCAACTACTAGACTATAAAATTCTTACTAAACAGTCA----------CTTTCTTGAAAACTCAGACCATCTTTTATTAA------------ATGTTTGCAATTAATAGAATATGTCCCTT----GAGTGGTTTCTCAATTAAGATTAAATAGGGACCTCAAAAAAG-TGG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87661400 424 - 129401213 TCATTTACTATGAAAATAATATGCAATACTCATCTAAATTTATTCTCTAAATCAGAACTATATACAATTCCTCTGTGATGCAGCCTTTGGTG-TATGCAAGCTGAACCA----TGTTACCAAGCCAGAG-ACACCTGGG-CTGTGTGAGGGTTAAGCAAATTCTCGCCCAGACTCATC--ATTTTTCCAATGTCATTTAAGACCAGTG------C--------TCTAGATGGTCC-AACCTGCATGCAGTAACTAGTTACTGAGCCT---CGG--TTGTACAGGAGGCTGGAATACGTTTTATTAAAGAACAAACA-TTTAACTTATTAGCTGCTACTAGGCTCTAAAAATT--------------------------------AGAGC-CTGATTGAGTTGTACTGA------------GGGTCTGCAATCACCAGAATGTATCCTCCAATATATATATATTTTGTCTAAGATTATATAGAAAGCTCAATAAAATTGG
i mm10.chr8                I 17 I 1505
s canFam3.chr16             17974227 437 -  59632846 CCCTTTGCTATGCAAATGATATGCAATACAGTTCCAAGTTTACTTTCTAAATCAGGATGATCTGTCACT--TCTGTGTTGCAGACAGTAGAGCTGTGGAAGCTTAACCA----TATTACC-AACCGATGACCATCTGGGTCTAGTTGAGCATAAAGTAAATTTTGACCCTATCTTGCCTTTTTTTTACAATATCATTCAAGACCAGAGAA----TCTTGAGAACCTATGAAGTCTCAAAATGCATTCAATGACTAGTTGCTGAGTATCTGTTGTTATGCCTCAACAACTGAGTTAAGTTTTATGGTGAAATGAAAGGC-TAAAATATAAGCAACTACTAGATTGTAAGAGTCTTACTAAAGAGTCAGTAAGGCTCTCTTTCTTGAGAGCCCAAATCAGATTTTACTAA------------ATCTCTCTAATTACCAGAGTCTATCT-CC----TGCTAGAATCTCa---------------------------------
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=594321.000000
s hg38.chr4_KI270925v1_alt    297701 286 +    555799 GGagaaaaaacgagaaaacaaaaaaattaaatggggaatgaagaaaagaaagg-----agaaaatg-----agaaaagaaataggga-agggagaaa--ggtaaaaAATAAATGGCATGCCAATCATTAACTCTAAAATCCAGGTGGAG------------AGATATATCAAACCAGGCAGGCAGGCCAAattagtcagagcaatgtttgctggccactataacaagcaac-ccaaaatctcagtggcttaaaataaaacttacgtctttctcattcgaagtcattgtcccttcagtggccctact------tggtgg
s panTro4.chr4             192994100 285 + 193495092 Ggagaaaaaacgagaaaac-aaaaaattaaatggggaatgaagaaaagaaagg-----agaaaatg-----agaaaagaaataggga-agggagaaa--ggtaaaaaaTAAATGGCATGCCAATCATTAACTCTAAAATCCAGGTAGAG------------AGATATATCAAACCAGGCAGGCAGGCCAACttagtcagagcaatgtttgctggccactataacaagcaac-ccaaaatctcagtggcttaaaataaaacttacgtctttctcattccaagttattgtcccttcagtggccctact------tggttg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198078218 278 + 198332218 Ggagaaaaaatgagagaac-aaaaaattaaatggggaatgaagaaaagaaagg-----agaaaatg-----agaaaagaaataggga-ggggagaaa--ggtaaaaaaTAAATGGCATGCCAGTCATTAACTCTAAAATCCAGGTGGAG------------AGATATATCAAAC----CAGGCAGGCCAAattagtcagagcaatgtttgctggccactataacaaacaac-ccaaaatctcagtgacttaaaataaaacttacgtctttctcattcaaagtcattgacccttcagtggccctact------tg---g
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183674744 269 + 184069350 G--GAACaaacgagagaac-agaaaattaaatggggaatgaagaaaagaaagg-----agaaaatg-----agaaaggaaataggga-ggggagaaa--ggtaaaaaataagTGGCATGCCAATCAT------TAAACTCCAGATGGAG------------AGATATAACAAACCAGATAGCCAGGTCAAATT----AGAGCAATGTTtgctggccactataaccaacaac-ccaaaatctcagtgacttaaaataaa----acatctctctcatgcaaagtcattgTCCCTTCAGTGGCCCTACTGACAGG------
i rheMac3.chr5             C 0 I 64
s macFas5.chr5             189058966 263 + 189454096 G--GAACAAACGAGAGAAC-AGAAAATTAAATGGGGAATGAAGAAAAGAAAGG-----AGAAAATG-----AGAAAGGAAATAGGGA-GGGGAGAAA--GGTAAAAAATAAGTGGCATGCCAATCAT------TAAACTCCAGATGGAG------------AGATATAACAAACCAGATAGCCAGGTCAAATT----AGAGCAATGTTtgctggccactataaccaacaac-ccaaaatctcagtgacttaaaataaa----acatctctctcatgcaaagtcattgTCCCTTCAGTGGCCCTACT------------
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178488151 267 + 178775436 g--gaacaaacgagagaac-agaaaattaaatggggaatgaagaaaagaaagg-----agaaaatg-----agaaaggaaataggga-ggggagaaa--ggtaaaaaatAAGTGGCATGCCAATCAT------TAAACTCCAGATGGAG------------AGAGATAACAAACCAGGTAGGCAGGTCAAATT----AGAGCAATGTTTGCTGGCCACTATAACCAACAAc-cccaaatctcagtgacttaaaataaaacttacatcTCTCTCATGCAAAGTCATTGTCCCTTCAGTGGCCCTACT------------
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135433400 267 + 135778131 G--GAACaaacgagagaac-agaaaattaaatggggaatgcagaaaagaaagg-----agaaaatg-----agaaaggaaataggga-ggggagaaa--ggTAAAAAATAAGTGGCATGCCAATCAT------TAAACTCCAGATGGAC------------AGAGGTAACAAACCAGATAGGCAGGTCAAATT----AGAGCAATGTTtgctggccactataaccaacaac-ccaaaatctcagtgacttaaaataaaacttacatctctctcatgcaaagtcattgTCCCTTCAGTGGCCCTACT------------
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190534060 282 - 190850796 G--GGGAAAATGAGAGAAC-AAAAAATTAAATGGGGAATGAAGAAAAGAAAGG-----AGAACATG-----TGAAAAGAAATGGGGGTGGGGAGAAA--AGTAAAACGTAAGTGGCACTGCAGTCACTAACTCTGAAATCCA-ATGGGG------------ACATACACCAAACCAGGCAGGCAGGCCAAatcagtcagtgcaatgttcgctagccactgtaacaaacaac-ccccaatctcagtgacttcagataaaact-atgtcttcctcatgcaaactcatcaccccttcagcagccctact------tggtgg
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17974664 268 -  59632846 -------------------aaagacattaaatgggaaatgaagaaaagtaaggaaggaagaaaaggcaaaaaggaaaggaatagaaa-atggaaaaagggggaaagaaTATGAGGCATCCCTACTCTCAATTCTAAAATCTAGATGGGGATTCCAAAATATACATATGTCAGTCAAAGCAGGAATGCTAAattagtcagtgcaatgttcactagctgctataacaaacaacacccaaatgtcagtggcttc-----------atgtatttttcatgc-atgctatagtctcctcagtggc------------------
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87661824 1505 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=7162.000000
s hg38.chr4_KI270925v1_alt    297987 9 +    555799 gtctcctcc
s panTro4.chr4             192994385 9 + 193495092 gtctcctcc
i panTro4.chr4             C 0 I 2053
s ponAbe2.chr4             198078496 9 + 198332218 gtctcctct
i ponAbe2.chr4             C 0 C 0
s calJac3.chr3             190534342 9 - 190850796 gtctcctcc
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17974932 8 -  59632846 -tctcttcc
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87661824 1505 - 129401213 I
e chlSab2.chr7             135433667 0 + 135778131 C
e papAnu2.chr5             178488418 0 + 178775436 C
e macFas5.chr5             189059229 0 + 189454096 C
e rheMac3.chr5             183675013 64 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=1883.000000
s hg38.chr4_KI270925v1_alt    297996 14 +    555799 gagtggtaactcag
s panTro4.chr4             192996447 14 + 193495092 gagtggtaactcag
i panTro4.chr4             I 2053 C 0
s ponAbe2.chr4             198078505 14 + 198332218 aagtggtaactcag
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189059229  5 + 189454096 ----GACAG-----
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178488418  5 + 178775436 ----GACAG-----
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135433667  5 + 135778131 ----GACAG-----
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190534351 14 - 190850796 gagagctaactcag
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17974940 14 -  59632846 aagtgctgactcag
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87661824 1505 - 129401213 I
e rheMac3.chr5             183675013 64 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=1217476.000000
s hg38.chr4_KI270925v1_alt    298010 547 +    555799  
s panTro4.chr4             192996461 547 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198078519 536 + 198332218  
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183675077 577 + 184069350  
i rheMac3.chr5             I 64 C 0
s macFas5.chr5             189059234 537 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178488423 537 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135433672 538 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190534365 538 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17974954 564 -  59632846  
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87661824 1505 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=1335022.000000
s hg38.chr4_KI270925v1_alt    298557 609 +    555799  
s panTro4.chr4             192997008 609 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198079055 610 + 198332218  
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183675654 604 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189059771 604 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178488960 603 + 178775436  
i papAnu2.chr5             C 0 M 332
s chlSab2.chr7             135434210 604 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190534903 579 - 190850796  
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87661824 1505 - 129401213 I
e canFam3.chr16             17975518   0 -  59632846 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=106524.000000
s hg38.chr4_KI270925v1_alt    299166 65 +    555799 cagcatctcattattgggccacgagaataagcagccagactctcagtttggtctgggaacaAACG
s panTro4.chr4             192997617 65 + 193495092 ctgcatctcattattgggccatgagaataagcagcctgactctcagtttggtctgggaacaAACG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198079665 65 + 198332218 ctgcatctcattattgggccacgagaataagcagcctgactctcagtttggtctgggaacaAACG
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183676258 65 + 184069350 ctgcatctcattattgggccacaagaataagcagcccgactcccagtttggtctgggaacaAACA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189060375 65 + 189454096 ctgcatctcattattgggccacaagaataagcagcccgactcccagtttggtctgggaacaAACA
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135434814 65 + 135778131 ctgcatctcattattgggccacgagaataagcagcccgactcccagtttggtctgggaacaAACA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190535482 59 - 190850796 ctgcatgtcggtattgggccacgagcgtaagcagcccgact----gtttgg--tgggaacaAACT
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87661824 1505 - 129401213 I
e canFam3.chr16             17975518  0 -  59632846 C
e papAnu2.chr5             178489563 332 + 178775436 M
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=256706.000000
s hg38.chr4_KI270925v1_alt    299231 111 +    555799 GACTTATCCCTGTAGGTAATAAAATGCCTTTGTCCATAGCTCCTGGCT---ATGAGCAGTGAACGAGGCCAAGGTTCTGCATGGCCCATTGAAGAGGAGACACTACTGGCAACA
s panTro4.chr4             192997682 111 + 193495092 GACTTATCCCTGTAGGTAATAAAATGCCTTTGTCCATAGCTCCTGGCT---ATGAGCAGTGAACGAGGCCAAGGTTCTGCATGGCCCATTGAAGAGGAGAAACTACTGGCAACA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198079730 111 + 198332218 GACTTATCCCTGTAGGTAATAAAATGCCTTTGTCCATAGCTCCTGGCT---ATGAGCAGTGAACGAGGCCAAGGTTCTGCAGGGCCCATTGAAGAGGAGAAACTACTGGCAACA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183676323 111 + 184069350 GACTTATCCCTGTAGGTAATAAAATGCCTTTGTCCATAGCTCCTGGTT---ATGAGCAGTGAACGAAGCCAAAGGTCTGCATGACCCATGGAAGAGGAGAAACTACTGGCAACA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189060440 111 + 189454096 GACTTATCCCTGTAGGTAATAAAATGCCTTTGTCCGTAGCTCCTGGTT---ATGAGCAGTGAACGAAGCCAAAGGTCTGCATGACCCATGGAAGAGGAGAAACTACTGGCAACA
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135434879 111 + 135778131 GACTTATCCCTGTAGGTAATAAAATGCCTTTGTCCGTAGCTCCCGGCT---ATGAGCAGTGAACGAAGCCAAAGGTCTGCATGACCCACTGAAGAGGAGAAACTACTGGCAACA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190535541 109 - 190850796 GACTTATCCCTCTGGGTAATAAAACGCCTTTGTCCATAGCTCCTGGCT---ATGAGCAGTGAACAAAGCCAGGGGTCTGCATG-CGCATTAAAGA-GAAAACCCACTGGGAACA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87663329 114 - 129401213 GACTTTTCCCTGTAGATAATAAAATACTTTTGTTCATATACCCTGGCTAAAAAGAAAAGTGAAGTGTATTAAGAGTACACATTATCCACTGAAAAGCAGCAAATGCCAGCAACA
i mm10.chr8                I 1505 C 0
s canFam3.chr16             17975518 108 -  59632846 GACTTTTCCCTTCAGACTATGAA---TATTTGTTAATAGCTCCTGACC---ATAAGCAGTGAAGAGTGTGAAGGGTATGCATGGTCAACTGAAAAGAAGAAACTACTGGCAACA
i canFam3.chr16            C 0 I 798
e papAnu2.chr5             178489563 332 + 178775436 M
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=86778.000000
s hg38.chr4_KI270925v1_alt    299342 50 +    555799 GCAAGCCAGGCAGGCTGCT--CTCCAGGTGctaggtacc-----------agtcttggcctca
s panTro4.chr4             192997793 61 + 193495092 GCAAGCCAGGCAGGCTGCT--CTCCAGGTGCTAGGTACCTCCAGGCTAGAGgtcttggcctca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198079841 50 + 198332218 GCAAGCCAGGCAGGCTGCT--CTCCAGGTGctggatacc-----------agtcttggcctca
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183676434 50 + 184069350 GCAGGCCAGGCAGGCTGCT--CTGCAGGTGTtggatacc-----------agtcttggcctca
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189060551 50 + 189454096 GCAGGCCAGGCAGGCTGCT--CTGCAGGTGTtggatacc-----------agtcttggcctca
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135434990 50 + 135778131 GCAGGCCAGGCAGGCTGCT--CTGCAGGTGTtgggtacc-----------agtcttggcctca
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190535650 50 - 190850796 GCAAGCCGGGCAGCCTGCT--CTCCAGGTGCCCggtacc-----------agtcttggcctca
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87663443 45 - 129401213 GGAAGCCAAGGAATTTGCCAGAGCTGGATGCTGGGTACG-----------AGT-------TCA
i mm10.chr8                C 0 C 0
e canFam3.chr16             17975626 798 -  59632846 I
e papAnu2.chr5             178489563 332 + 178775436 M
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=82067.000000
s hg38.chr4_KI270925v1_alt    299392 37 +    555799 atccttaactatctgtgtg----aattggacaagtccatca
s panTro4.chr4             192997854 37 + 193495092 atccttaactatctgtgtg----aattggacaagtccatca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198079891 37 + 198332218 atccttaactatctgtgtg----aattggacaagtccatca
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183676484 37 + 184069350 atccgtaactatctgtgtg----aactggacaagcccatca
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189060601 37 + 189454096 atccgtaactatctgtgta----aactggacaagcccatca
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178489895 37 + 178775436 aTCCGTAACTATCTGTGTG----AACTGGACAAGCCCATCA
i papAnu2.chr5             M 332 C 0
s chlSab2.chr7             135435040 36 + 135778131 atccgtaactatctgtgtg----aa-tggacaagcccatca
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190535700 37 - 190850796 gtacttaactgtcggtgtt----cactggacaagcccatca
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87663488 41 - 129401213 GTGCTTAGTCTGATGTGTGATGAAATTGAAAAACAACATCA
i mm10.chr8                C 0 I 15756
e canFam3.chr16             17975626 798 -  59632846 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=268700.000000
s hg38.chr4_KI270925v1_alt    299429 136 +    555799 gttccttggtgtctcagttgattcatctataaaatgaggaaaataatGTGTAATGTGTAAGAAAGCTCTGTGGATCAATGTTTAAAATACGTGAGAGAAACACCAAAAGCAACACCAAAGCGTGCAGTCATGGAAG
s panTro4.chr4             192997891 136 + 193495092 gttccttggtgtctcagttgattcatctataaaatgaggaaaataatGTGTAATGTGTAAGAAAGCTCTGTGGATCAATGTTTAAAATACGTGAGAGAAACACCAAAAGCAACACCAAAGGGTGCAGTCATGGAAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198079928 115 + 198332218 gttccttcgtgtctcagttgattcatctataaaatgaggaaaataatGTGTAATGTGTAAGAAAGCTCT---------------------GTGAGAAAAACACCAAAAGCAACACCAAAGCATGCAGTCATGGAAG
i ponAbe2.chr4             C 0 I 6
s rheMac3.chr5             183676521 135 + 184069350 attcctttgtgtctcagttgattaatctataaaatgagaagaataatGTGTAATGTGTAGAAAAGCT-TGTTGATCAATGTTTAAAATATGTGAGAGAAACACCAAAAGCAACACCAAAGCGTGCAGTCATGGAAG
i rheMac3.chr5             C 0 I 5
s macFas5.chr5             189060638 135 + 189454096 attcctttgtgtctcagttgattaatctataaaatgagaagaataatGTGTAATGTGTAGAAAAGCT-TGTTGATCAATGTTTAAAATATGTGAGAGAAACACCAAAAGCAACACCAAAGCGTGCAGTCATGGAAG
i macFas5.chr5             C 0 M 6494
s papAnu2.chr5             178489932 134 + 178775436 ATTCCTTTGTGTCTCAGTTGattaatctataaaatgaggagaatAATGTGTAATGTGTAG-AAAGCT-TGTTGatcaatgtttaaaatatgtgAGAGAAACACCAAAAGCAGCACCAAAGCGTGCAGTCATGGAAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135435076 136 + 135778131 attcctttgtgtctcagttgattaatctataaaatgagaagaataatGTGTAATGTGTAGAAAAGCTCTGTTGATCAATGTTTAAAATATGTGAGAGAAACACCAAAAGCAACACCAAAGCCTGCAGTCATGGAAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190535737 132 - 190850796 agtcctttgtgtcccagctgattcatctataaaatgaggagaatcatgcttaatgcgtaggaaagctctgtggatCGGTGTTTAACGTATGTGAGAGGAA---GTAGAGCCACCTCGACACGTGCAGTC-TGGAAG
i calJac3.chr3             C 0 I 10
e mm10.chr8                 87663529 15756 - 129401213 I
e canFam3.chr16             17975626 798 -  59632846 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=-2332.000000
s hg38.chr4_KI270925v1_alt    299565 30 +    555799 TCATGACT-TCAGCGTGAAGTCATGATTACT
s panTro4.chr4             192998027 30 + 193495092 TCATGACT-TCAGCGTGAATTCATGATTACT
i panTro4.chr4             C 0 C 0
s papAnu2.chr5             178490066  4 + 178775436 ----GACA-----------------------
i papAnu2.chr5             C 0 I 1
s chlSab2.chr7             135435212  5 + 135778131 ----GACAG----------------------
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87663529 15756 - 129401213 I
e canFam3.chr16             17975626 798 -  59632846 I
e calJac3.chr3             190535869 10 - 190850796 I
e macFas5.chr5             189060773 6494 + 189454096 M
e rheMac3.chr5             183676656  5 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198080043  6 + 198332218 I

a score=187.000000
s hg38.chr4_KI270925v1_alt    299595 1 +    555799 G
s panTro4.chr4             192998057 1 + 193495092 G
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183676661 1 + 184069350 A
i rheMac3.chr5             I 5 C 0
s papAnu2.chr5             178490071 1 + 178775436 A
i papAnu2.chr5             I 1 C 0
s chlSab2.chr7             135435217 1 + 135778131 A
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87663529 15756 - 129401213 I
e canFam3.chr16             17975626 798 -  59632846 I
e calJac3.chr3             190535869 10 - 190850796 I
e macFas5.chr5             189060773 6494 + 189454096 M
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198080043 6 + 198332218 I

a score=22855.000000
s hg38.chr4_KI270925v1_alt    299596 18 +    555799 AATCAGTGAGGAATAAGG
s panTro4.chr4             192998058 18 + 193495092 AATCAGTGAGGAATAAGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198080049 18 + 198332218 AATCCGTGAGGAATAAGG
i ponAbe2.chr4             I 6 I 1
s rheMac3.chr5             183676662 18 + 184069350 AATCAGTGAggaataagg
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178490072 18 + 178775436 ACTCAGTGAGGAAtaagg
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135435218 18 + 135778131 AATCAGTGAGGAACAAGG
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87663529 15756 - 129401213 I
e canFam3.chr16             17975626 798 -  59632846 I
e calJac3.chr3             190535869 10 - 190850796 I
e macFas5.chr5             189060773 6494 + 189454096 M
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=30672.000000
s hg38.chr4_KI270925v1_alt    299614 35 +    555799 GTGGAGGGTGGGGTCACGGAGATGGAAACACCAGT
s panTro4.chr4             192998076 35 + 193495092 GTGGAGGGTGGGGTCATGGAGATGGAAACACCAGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198080068 35 + 198332218 GTGGAGGGTGGGGTCGTGGAGATGGAAACACCAGT
i ponAbe2.chr4             I 1 T 45
s rheMac3.chr5             183676680 35 + 184069350 gtggagggtggggggatggagatagaaacaccagt
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178490090 20 + 178775436 gtggagggtgaggggatGGA---------------
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135435236 35 + 135778131 TTGGAGGCTGGGGCCATGGAGATGGAAACACCAGT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87663529 15756 - 129401213 I
e canFam3.chr16             17975626 798 -  59632846 I
e calJac3.chr3             190535869 10 - 190850796 I
e macFas5.chr5             189060773 6494 + 189454096 M
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=39227.000000
s hg38.chr4_KI270925v1_alt    299649 55 +    555799 GGAATAAG-G-GTGGAGGGTGGGGTCATGGAGATGGAAACACCAGTGGAATAAGAGG
s panTro4.chr4             192998111 55 + 193495092 GGAATGAG-G-GTGGAGGGTGGGGTTATGGAGATGGAAACAGCAGGGGAATAAGAGG
i panTro4.chr4             C 0 I 42
s ponAbe2.chr4             198080058 56 + 198332218 GGAATAAG-GAGTGGAGGGTGGGGTCGTGGAGATGGAAACACCAGTGGAATAAGAGG
i ponAbe2.chr4             T 45 C 0
s rheMac3.chr5             183676715 54 + 184069350 ggaataag-g-gtggagggtgaggtcatggaggtggaaacaccagtgggatagg-gg
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178490110 21 + 178775436 -----------------------------------GAAACACCAGTGGAAtaag-gg
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135435271 56 + 135778131 GGAATAAGAG-GTGGAGGGTAGGGGGATGGAGATGGAAACACCAGTGGAATAAGAGG
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87663529 15756 - 129401213 I
e canFam3.chr16             17975626 798 -  59632846 I
e calJac3.chr3             190535869 10 - 190850796 I
e macFas5.chr5             189060773 6494 + 189454096 M
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=45252.000000
s hg38.chr4_KI270925v1_alt    299704 70 +    555799 TAGAGAGTGGGGTCGTGGAGATGGAAACACCAGTGGAATAAG-GGTGGAGGGTGGGGTCATGGAGATGG-AA
s ponAbe2.chr4             198080114 71 + 198332218 TAGACGGTAGGGTTATGGAGATGGAAACACCAGTGGAAAAAG-GGTGGAGGGTGGAGTCATGGAAATGGAAA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183676769 70 + 184069350 tggagggtggggggatggagatagaaacaccagtgggataag-ggtggagggtgaggtcatggaggtgg-AA
i rheMac3.chr5             C 0 I 276
s papAnu2.chr5             178490131 66 + 178775436 tggagggtgaggggatGG----AGAAACACCAGTGGAataag-ggtggagggtggggggatGGCGATGG-AA
i papAnu2.chr5             C 0 I 1
s chlSab2.chr7             135435327 71 + 135778131 TGGAGGGTGGGGCCATGGAGATGGAAACACCAGTGGAATAAGAGGTGGAGGGTAGGGGGATGGAGATGG-AA
i chlSab2.chr7             C 0 I 1
e mm10.chr8                 87663529 15756 - 129401213 I
e canFam3.chr16             17975626 798 -  59632846 I
e calJac3.chr3             190535869 10 - 190850796 I
e macFas5.chr5             189060773 6494 + 189454096 M
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192998166 42 + 193495092 I

a score=27071.000000
s hg38.chr4_KI270925v1_alt    299774 59 +    555799 CACCAGGGGAATAAG-G-GTGGAGGGTGGAGTCATGGAGATGGAAACACCAGTGGAATAAG
s ponAbe2.chr4             198080185 60 + 198332218 CACCAGTGGAATAAG-GAGTAGAGGGTGGTGTCATGGAGATGGAAACACCAGGGGAATAAG
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178490198 59 + 178775436 CACCAGTGGAAtaag-g-gtggagggtgaggggatGGAGATGGAAACACCAGTGGAAtaag
i papAnu2.chr5             I 1 C 0
s chlSab2.chr7             135435399 60 + 135778131 CACCAGTGGAATAAGAG-GTGGAGGGTGGAGTCATGGAGATGGAAACACCAGTGGAATAAG
i chlSab2.chr7             I 1 C 0
e mm10.chr8                 87663529 15756 - 129401213 I
e canFam3.chr16             17975626 798 -  59632846 I
e calJac3.chr3             190535869 10 - 190850796 I
e macFas5.chr5             189060773 6494 + 189454096 M
e rheMac3.chr5             183676839 276 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e panTro4.chr4             192998166 42 + 193495092 I

a score=3003.000000
s hg38.chr4_KI270925v1_alt    299833 4 +    555799 AGGT
s panTro4.chr4             192998208 4 + 193495092 AGGT
i panTro4.chr4             I 42 C 0
s ponAbe2.chr4             198080245 4 + 198332218 AGGT
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178490257 3 + 178775436 -ggt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135435459 3 + 135778131 -GGT
i chlSab2.chr7             C 0 T 179
e mm10.chr8                 87663529 15756 - 129401213 I
e canFam3.chr16             17975626 798 -  59632846 I
e calJac3.chr3             190535869 10 - 190850796 I
e macFas5.chr5             189060773 6494 + 189454096 M
e rheMac3.chr5             183676839 276 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=21897.000000
s hg38.chr4_KI270925v1_alt    299837 35 +    555799 AGAGGGTGGTGTC------ATGGAGATTGAAACACCAGTGG
s panTro4.chr4             192998212 41 + 193495092 AGAGGGTGGGGTCGGGGTGATGGAAATGGAAACACCACTGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198080249 35 + 198332218 GGAGGGTGGTATC------ACAGAGATGGAAACACCAGTGG
i ponAbe2.chr4             C 0 T 213
s papAnu2.chr5             178490260 35 + 178775436 ggagggtgagggg------atGGAGATGGAAACACCAGTGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135435283 35 + 135778131 GGAGGGTAGGGGG------ATGGAGATGGAAACACCAGTGG
i chlSab2.chr7             T 179 C 0
e mm10.chr8                 87663529 15756 - 129401213 I
e canFam3.chr16             17975626 798 -  59632846 I
e calJac3.chr3             190535869 10 - 190850796 I
e macFas5.chr5             189060773 6494 + 189454096 M
e rheMac3.chr5             183676839 276 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=1218.000000
s hg38.chr4_KI270925v1_alt    299872 9 +    555799 AATAAG-AGA
s panTro4.chr4             192998253 9 + 193495092 AATAAG-GGA
i panTro4.chr4             C 0 T 96
s papAnu2.chr5             178490295 8 + 178775436 AAtaag-gg-
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135435318 9 + 135778131 AATAAGAGG-
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87663529 15756 - 129401213 I
e canFam3.chr16             17975626 798 -  59632846 I
e calJac3.chr3             190535869 10 - 190850796 I
e macFas5.chr5             189060773 6494 + 189454096 M
e rheMac3.chr5             183676839 276 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198080284 213 + 198332218 T

a score=613.000000
s hg38.chr4_KI270925v1_alt    299881 2 +    555799 TA
s panTro4.chr4             192998166 2 + 193495092 TA
i panTro4.chr4             T 96 C 0
s papAnu2.chr5             178490303 2 + 178775436 tg
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135435327 2 + 135778131 TG
i chlSab2.chr7             C 0 T 90
e mm10.chr8                 87663529 15756 - 129401213 I
e canFam3.chr16             17975626 798 -  59632846 I
e calJac3.chr3             190535869 10 - 190850796 I
e macFas5.chr5             189060773 6494 + 189454096 M
e rheMac3.chr5             183676839 276 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198080284 213 + 198332218 T

a score=35589.000000
s hg38.chr4_KI270925v1_alt    299883 41 +    555799 GAGGGTGGGGTCGTGGAGATGGAAACACCAGTGGAATAAGA
s panTro4.chr4             192998168 41 + 193495092 GAGGGTGGGGTCATGGAGATGGAAACACCAGTGGAGTAAGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198080071 41 + 198332218 GAGGGTGGGGTCGTGGAGATGGAAACACCAGTGGAATAAGA
i ponAbe2.chr4             T 213 T 45
s papAnu2.chr5             178490305 41 + 178775436 gagggtgaggtCATGGAGATGGAAACACCAGTGGAAtaagg
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135435239 41 + 135778131 GAGGCTGGGGCCATGGAGATGGAAACACCAGTGGAATAAGA
i chlSab2.chr7             T 90 C 0
e mm10.chr8                 87663529 15756 - 129401213 I
e canFam3.chr16             17975626 798 -  59632846 I
e calJac3.chr3             190535869 10 - 190850796 I
e macFas5.chr5             189060773 6494 + 189454096 M
e rheMac3.chr5             183676839 276 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=67620.000000
s hg38.chr4_KI270925v1_alt    299924 107 +    555799 GGTAGAGGGTGGGGTCG------TGGAGATGGAAACACCAGTGGAATAAGAGGTGGAGGGTGGGGCCATGGAGATGGAAACACCAGGGGAATAAG-GG-TGGAGGGTGGAGTCAT
s panTro4.chr4             192998209 113 + 193495092 GGTAGAGGGTGGGGTCGGGGTGATGGAAATGGAAACACCACTGGAATAAG-GGAGGAGGGTGGGGTCATGGAGATGGAAACACCAGTGGAATAAG-AGATGGAGGGTGGGGTCAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198080067 107 + 198332218 AGTGGAGGGTGGGGTCG------TGGAGATGGAAACACCAGTGGAATAAGAGGTAGACGGTAGGGTTATGGAGATGGAAACACCAGTGGAAAAAG-GG-TGGAGGGTGGAGTCAT
i ponAbe2.chr4             T 45 C 0
s papAnu2.chr5             178490346  98 + 178775436 ggtggagggtgggggga------tgga----gaaacaccagtggaataag-ggtggagggtgaggggatgga----gAAACACCAGTGGAAtaag-gg-tggagggtgaggggat
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135435280 108 + 135778131 GGTGGAGGGTAGGGGGA------TGGAGATGGAAACACCAGTGGAATAAGAGGTGGAGGGTGGGGCCATGGAGATGGAAACACCAGTGGAATAAGAGG-TGGAGGGTAGGGGGAT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87663529 15756 - 129401213 I
e canFam3.chr16             17975626 798 -  59632846 I
e calJac3.chr3             190535869  10 - 190850796 I
e macFas5.chr5             189060773 6494 + 189454096 M
e rheMac3.chr5             183676839 276 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=71524.000000
s hg38.chr4_KI270925v1_alt    300031 72 +    555799 GGAGATGGAAACACCAGTGGAATAAGAGGTAGAGGGTGGTGTCATGGAGATTGAAACACCAGTGGAATAAGA
s panTro4.chr4             192998322 72 + 193495092 GGAGATGGAAACACCAGTGAAGTAAGAGGTAGAGGGTAGGGTCATAGAGATGGAAACACCAGTGGAATAAGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198080174 72 + 198332218 GGAAATGGAAACACCAGTGGAATAAGGAGTAGAGGGTGGTGTCATGGAGATGGAAACACCAGGGGAATAAGA
i ponAbe2.chr4             C 0 T 175
s rheMac3.chr5             183677115 70 + 184069350 GGAGATGGAAACACCAGTggaataa-gggtggagggtggggggatggagatggaaacaccagtgggataag-
i rheMac3.chr5             I 276 C 0
s papAnu2.chr5             178490444 63 + 178775436 GGA----GAAACACCAGTGGAATAaggggtggagggtgaggggatGGA----GAAACACCAGTGGAAtaag-
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135435388 71 + 135778131 GGAGATGGAAACACCAGTGGAATAAGAGGTGGAGGGTGGAGTCATGGAGATGGAAACACCAGTGGAATAAG-
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87663529 15756 - 129401213 I
e canFam3.chr16             17975626 798 -  59632846 I
e calJac3.chr3             190535869 10 - 190850796 I
e macFas5.chr5             189060773 6494 + 189454096 M
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=139.000000
s hg38.chr4_KI270925v1_alt    300103 4 +    555799 GATA
s panTro4.chr4             192998394 3 + 193495092 G-TG
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183677185 4 + 184069350 ggtg
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178490507 4 + 178775436 ggtg
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135435459 4 + 135778131 GGTT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87663529 15756 - 129401213 I
e canFam3.chr16             17975626 798 -  59632846 I
e calJac3.chr3             190535869 10 - 190850796 I
e macFas5.chr5             189060773 6494 + 189454096 M
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198080246 175 + 198332218 T

a score=35392.000000
s hg38.chr4_KI270925v1_alt    300107 34 +    555799 G-AGGGTGGGGTCGTGGAGATGGAAACACCAGTGG
s panTro4.chr4             192998397 34 + 193495092 G-AGGGTGGGGTCATGGAGATGGAAACACCAGTGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198080071 34 + 198332218 G-AGGGTGGGGTCGTGGAGATGGAAACACCAGTGG
i ponAbe2.chr4             T 175 C 0
s rheMac3.chr5             183677189 34 + 184069350 g-agggtggggggatggagatagaaacaccagtgg
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178490511 30 + 178775436 g-agggtgaggggatGG----CGAAACACCAGTGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135435463 35 + 135778131 GCAGGGTGGGGGGATGGAGATGGAAACACCAGTGG
i chlSab2.chr7             C 0 T 135
e mm10.chr8                 87663529 15756 - 129401213 I
e canFam3.chr16             17975626 798 -  59632846 I
e calJac3.chr3             190535869 10 - 190850796 I
e macFas5.chr5             189060773 6494 + 189454096 M
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=90093.000000
s hg38.chr4_KI270925v1_alt    300141 86 +    555799 AATAAGAGGTAGAGGGTGGGGTCGTGGAGATGGAAACACCAGTGGAATAAG-AGGTGGAGGGTGGGGCCATGGAGATGGAAACACCA
s panTro4.chr4             192998431 85 + 193495092 AGTAAGAGGTAGAGGGTGGGGTCATGGAGATGGAAACACCAGTGGAATAAG-AG-TGGAGGGTGGGGTCATGGAGATGGAAACACCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198080105 85 + 198332218 AATAAGAGGTAGACGGTAGGGTTATGGAGATGGAAACACCAGTGGAAAAAG-GG-TGGAGGGTGGAGTCATGGAAATGGAAACACCA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183677223 84 + 184069350 gatagg-ggtggagggtggggggatggagatagaaacaccagtgggatagg-gg-tggagggtgggggGATGGAGATAGAAACACCA
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178490541 84 + 178775436 AAtaag-ggtggagggtgaggggatGGCGATGGAAACACCAGTGGAAtaag-gg-tggagggtgaggggatGGCGATGGAAACACCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135435363 86 + 135778131 AATAAGAGGTGGAGGGTAGGGGGATGGAGATGGAAACACCAGTGGAATAAGAGG-TGGAGGGTGGAGTCATGGAGATGGAAACACCA
i chlSab2.chr7             T 135 C 0
e mm10.chr8                 87663529 15756 - 129401213 I
e canFam3.chr16             17975626 798 -  59632846 I
e calJac3.chr3             190535869 10 - 190850796 I
e macFas5.chr5             189060773 6494 + 189454096 M
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=16185.000000
s hg38.chr4_KI270925v1_alt    300227 10 +    555799 GGGGAATAAG
s panTro4.chr4             192998516 10 + 193495092 GTGGAATAAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198080190 10 + 198332218 GTGGAATAAG
i ponAbe2.chr4             C 0 I 46
s rheMac3.chr5             183677307 10 + 184069350 GTGGGATAAG
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178490625 10 + 178775436 GTGGAAtaag
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135435449 10 + 135778131 GTGGAATAAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190535879 10 - 190850796 GAGGAATAGG
i calJac3.chr3             I 10 C 0
e mm10.chr8                 87663529 15756 - 129401213 I
e canFam3.chr16             17975626 798 -  59632846 I
e macFas5.chr5             189060773 6494 + 189454096 M
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=2019.000000
s hg38.chr4_KI270925v1_alt    300237 3 +    555799 -GGT
s panTro4.chr4             192998526 3 + 193495092 -GGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198080246 3 + 198332218 -GGT
i ponAbe2.chr4             I 46 C 0
s rheMac3.chr5             183677317 3 + 184069350 -GGT
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178490635 3 + 178775436 -ggt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135435459 3 + 135778131 -GGT
i chlSab2.chr7             C 0 I 1
s calJac3.chr3             190535889 3 - 190850796 GAG-
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87663529 15756 - 129401213 I
e canFam3.chr16             17975626 798 -  59632846 I
e macFas5.chr5             189060773 6494 + 189454096 M
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=11061.000000
s hg38.chr4_KI270925v1_alt    300240 6 +    555799 GGAGGG
s panTro4.chr4             192998529 6 + 193495092 GGAGGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198080249 6 + 198332218 GGAGGG
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183677320 6 + 184069350 GGAGGG
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178490638 6 + 178775436 ggaggg
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135435463 6 + 135778131 GCAGGG
i chlSab2.chr7             I 1 C 0
s calJac3.chr3             190535892 6 - 190850796 GGAGGG
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87663529 15756 - 129401213 I
e canFam3.chr16             17975626 798 -  59632846 I
e macFas5.chr5             189060773 6494 + 189454096 M
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=9560.000000
s hg38.chr4_KI270925v1_alt    300246 11 +    555799 TGGGGCCATGG
s panTro4.chr4             192998535 11 + 193495092 TGGAGTCATGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198080255 11 + 198332218 TGGTATCACAG
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183677326 11 + 184069350 TGAGGTCATGG
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178490644 11 + 178775436 tgaggggatGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135435469 11 + 135778131 TGGGGGGATGG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190535898  9 - 190850796 CG--GTTACGG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17976424 11 -  59632846 TGGTACCATGG
i canFam3.chr16            I 798 C 0
e mm10.chr8                 87663529 15756 - 129401213 I
e macFas5.chr5             189060773 6494 + 189454096 M
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=145382.000000
s hg38.chr4_KI270925v1_alt    300257 67 +    555799 AGATGGAAA-CACCAGT--GAGGCACTAGGGATACATTCACATGATTTGGAAATGC-AAAGACATGGAAGA
s panTro4.chr4             192998546 67 + 193495092 AGATGGAAA-CACCAGT--GGGGCACTAGGGATACATTCACATGATTTGGAAATGC-AAAGACATGGAAGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198080266 67 + 198332218 AGATGGAAA-CACCAGT--GGGGCACTAGGGATACATTCACATGATTTGGAAATGT-AAAGACATGGAAGA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183677337 67 + 184069350 AGGTGGAAA-CACCAGT--GGGGCACTAGGgatacagtcacatgatttggaaatgc-agagacatggaaga
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178490655 67 + 178775436 CGATGGAAA-CACCAGT--GGGGCACTAGGGATACAGTCACATGATTTGGAAATGC-AGAGACATGGAAGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135435480 67 + 135778131 AGATGGAAA-CACCAGT--GGGGCACTAGGGATACAGTCACATGATTTGGAAATGC-AGAATCATGGAAGA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190535907 66 - 190850796 AGATGGACT-TGCCAGC--GGGGCACTGGGGAGAC--TCACATGATTTGGAAACGCAAAAGGCACGGAAGA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87679285 69 - 129401213 AAATGAAAA-CAGCATTTCAAGGCACAAAGCAAAAGTTGGCAAGATTTGGAGACAA-AAAGGCATGACAGA
i mm10.chr8                I 15756 I 586
s canFam3.chr16             17976435 68 -  59632846 AAATGGAAACCACAGGC--AGGGCACAAAGGATAAATTAACAAGATTTGGAAACAC-AAAGACACGATAGA
i canFam3.chr16            C 0 C 0
e macFas5.chr5             189060773 6494 + 189454096 M
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=409170.000000
s hg38.chr4_KI270925v1_alt    300324 234 +    555799 CAGAGCACagaaagaaatgacaagcagctccaatttctgagtgcaggtaactg-aaagaatgatggtatcaccgaa-aa--aataaagtagttgtgtgggggctcacttgacggggaagacaaggagttcacttttgcacaaatcaatctgaactgAAAGC-AAGGAACCAACCGTGCTCTAGGGAGTAAGAGATACCCAACCAAAACTCAGGAAGTGATTGCCATTTAAGCTCAGCTT
s panTro4.chr4             192998613 234 + 193495092 CAGAGCACagaaagaaatgacaagcaactccagtttctgagtccaggtaactg-aaagaacgatggtatcaccgaa-aa--aataaagtagttgtgtgggggctcacttgacggggaagacaaggagttcacttttgcacaaatcaatctgaactgAAAGC-AAGGAACCAATCGTGCTCTAGGGAGTAAGAGATACACAACCAAAGCTCAGGAAGTGATTGCCATTTAAGCTCAGCTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198080333 234 + 198332218 Cagagcacagaaagaaatcacaagcagctccagtttctgagtccaggtaactg-aaacaacaatggtatcactgaa-aa--aataaagtagttgtgtgggggctcacttgatggggaagacaaggagttcaattttgcacaaatcaatctgaactgAAAGC-AAGGAACCAACTGTCCTCTAGGGAGTAAGAGATACCCAACCAAAGCTCAGGAAGTGATTGTCATTTAAGCTCAGCTT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183677404 229 + 184069350 cagagcacagaaagaaatcacaagcagctcccgtttctgagtccaggtaactg-aaagaacgatggcataactgaataa--aataaagtagt-gggtggggactcacttgatggggaagacaaagagttcaactttgcacGAATCAATCTGAACTGAAGGC-AAGAAACCAAGTGTCCTCTAAGGAGTAAGAGAT-----ACCAAAGCTCAGGAAGTGACTGTCATTTAAGCTCAGCTT
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178490722 230 + 178775436 CAGAGCACAGAAAGAAATCACAAGCAGCTCCCGTTTCTGAGTCCAGGTAACTGAAAAGAACGATGGCAtaactgaataa--aataaagtagt-gGGTGGGGACTCACTTGATGGGGAAGACAAAGAGTTCAACTTTGCACGAATCAATCTGAACTGAAGGC-AAGAAACCAAGTGTCCTCTAGGGAGTAAGAGAT-----ACCAAAGCTCAGGAAGTGACTGTCATTTAAGCTCAGCTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135435547 230 + 135778131 Cagagcacagaaagaaatcacaagcagctccagtgtctgagtccaggtaactg-aaagaacgatggtataactgaataa--aataaagtagtggggtggggactcacttgatggggaagacaaagagttcaactttgcacGAATCAATCTGAACTGAAGGC-AAAAAACCAAGTGTCCTCTAAGGAGTAAGAGAT-----ACCAAAGCTCAGGAAGTGACTGTCATTTAATCTCAGCTT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190535973 234 - 190850796 CAGAGCACAGAGAGAAATCACAAGCAGAGCCAGCTTCTGAGTCCAGGTAA-TG-AAGGAACCATGGCATCGCCAAA-AAGCGATAAAGTATGTGGGTGGGG-CTCACTTGATGGGGAACACAAGGAGTTAGACTGTGCACAAATCAATCTGAACCGAAGGC-CAGAAACCAGCTGTCTCTTAGGGAGCAAGAGGCACCCGACCAACGTCCAGGAAGTGACTGTCCTTTAAGCTCAGTTT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17976503 216 -  59632846 TATAGAGTAGAAAGGAATCAAAAATAGCTTACATTT-GGAATCTAGGTAACTA-AGAGAATAACGATATTGATGAA-AA------AAGTAGTTGGGTGGGGTCTCATTT-ATGAGGAAGACAA--AGTTAAGTTTTGGGCAAATCAATCTGAATGGAAGACAAAAAAACCAGGTGACTTTCAGAGAGCAAGA----------TAAAGTTCA-GAAGTGACTGTCACTTAAAACCAATTT
i canFam3.chr16            C 0 I 395
e mm10.chr8                 87679354 586 - 129401213 I
e macFas5.chr5             189060773 6494 + 189454096 M
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=2130.000000
s hg38.chr4_KI270925v1_alt    300558 2 +    555799 CC
s panTro4.chr4             192998847 2 + 193495092 CC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198080567 2 + 198332218 CT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183677633 2 + 184069350 CC
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178490952 2 + 178775436 CC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135435777 2 + 135778131 CC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190536207 2 - 190850796 AC
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87679354 586 - 129401213 I
e canFam3.chr16             17976719 395 -  59632846 I
e macFas5.chr5             189060773 6494 + 189454096 M
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=138752.000000
s hg38.chr4_KI270925v1_alt    300560 85 +    555799 GATCAATTCACAT------A--GTTAAATCCACATGTGAAGTAAGC-------TTACAATCACTTTCCGAATTTTT-ATTACTCTAATATATATTTAAATT
s panTro4.chr4             192998849 86 + 193495092 GATCAATTCACAT------A--GTTAAATCCACACGTGAAGTAAGT------GTTACAATCACTTTCCGAATTTTT-ATTACTCTAATATATATTTAAATT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198080569 93 + 198332218 GATCAATTCACATAGAAAGA--GTTAAATCCACATGTGAAGTAAGC------GTTACAATCACTTTCCGAATTTTTGATTACTCTAATATATATTTAAATT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183677635 90 + 184069350 GATCAATTCACGTAGAAAAATTGCTAAATCCATACATGAAGTAAGC------GTTACAATCACTTTCAGAATTTTTGAT-----TAATATATATGTAAATT
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178490954 90 + 178775436 GATCAATTCACATAGAAAAATTGCTAAATCCATACGTGAAGTAAGC------GTTACAATCACTTTCAGAATTTTTGAT-----TAATCTATATGTAAATT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135435779 86 + 135778131 GATCAATTCACATAGAAAAA--GCTAA--TGATACGTGAAGTAAGC------GTTACAATCACTTTCAGAATTTTTGAT-----TACTATATATTTAAATT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190536209 98 - 190850796 GATCAATTCA-GTAGAAAGA--GTTAAATCCCTATGTGAAGTAAGCATTACAATTACAATCACTGTCAGAATTTGTGATTACTCTAATATGGATGTAAATT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17977114 92 -  59632846 GATCAATTCACACAGAAAGA--GTTAA-TACATAAGTGAAGTAAAC------CCTGCAATCCCTTTCAGAATTTTGGATTACTCTAATCTAGACTTAAGTT
i canFam3.chr16            I 395 C 0
e mm10.chr8                 87679354 586 - 129401213 I
e macFas5.chr5             189060773 6494 + 189454096 M
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=1330846.000000
s hg38.chr4_KI270925v1_alt    300645 708 +    555799  
s panTro4.chr4             192998935 698 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198080662 707 + 198332218  
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183677725 699 + 184069350  
i rheMac3.chr5             C 0 I 24
s papAnu2.chr5             178491044 708 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135435865 696 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190536307 658 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87679940 676 - 129401213  
i mm10.chr8                I 586 C 0
s canFam3.chr16             17977206 732 -  59632846  
i canFam3.chr16            C 0 C 0
e macFas5.chr5             189060773 6494 + 189454096 M
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=161601.000000
s hg38.chr4_KI270925v1_alt    301353 48 +    555799 TTATTTCCTAATTCAAAGCTGTAATGGGATCAGGTTAGTAAGAGCCTG
s panTro4.chr4             192999633 48 + 193495092 TTATTTCCTAATTCAAAGCTGTAATGGGATCAGGTTAGTAAGAGCCTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198081369 48 + 198332218 TTATTTCCTAATTCAAAGCTGTAATGGGATCAGGTTAGTAAGAGCCTG
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183678448 48 + 184069350 TTATTTCCTAATTCAAAGCCGTAATGGGATCAGGTTAGTAAAAGCCTA
i rheMac3.chr5             I 24 C 0
s macFas5.chr5             189067284 48 + 189454096 TTATTTCCTAATTCAAAGCCGTAATGGGATCAGGTTAGTAAAAGCCTA
i macFas5.chr5             M 6494 C 0
s papAnu2.chr5             178491752 48 + 178775436 TTATTTCCTAATTCAAAGCCGTAATGGGATCAGGTTAGTAAAAGCCTA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135436561 48 + 135778131 TTATTTCCTAATTTAAAGCCGTAATGGGATCAGGTTAGTAAAAGCCTA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190536965 48 - 190850796 TAATTTACGAATTCAAAGCTGTAATCCGCTCGGGTTAGTAAAAGCCTG
i calJac3.chr3             C 0 I 145
s mm10.chr8                 87680616 48 - 129401213 TTATTTCCTAATTCAGCAGTGTAATGGGATTGAGTTAGTGAAAGCTTA
i mm10.chr8                C 0 C 0
s canFam3.chr16             17977938 48 -  59632846 TTATTTCCTAATTCAACACTATAATGGAATCAAGTTAGTGAAAGTCTA
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=1741201.000000
s hg38.chr4_KI270925v1_alt    301401 713 +    555799  
s panTro4.chr4             192999681 713 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198081417 763 + 198332218  
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183678496 696 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189067332 696 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178491800 695 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135436609 699 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190537158 705 - 190850796  
i calJac3.chr3             I 145 C 0
s mm10.chr8                 87680664 737 - 129401213  
i mm10.chr8                C 0 I 308
s canFam3.chr16             17977986 747 -  59632846  
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=19704.000000
s hg38.chr4_KI270925v1_alt    302114 7 +    555799 GGATCAG
s panTro4.chr4             193000394 7 + 193495092 GGATCAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198082180 7 + 198332218 GGATCAG
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183679192 7 + 184069350 GGATCGG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189068028 7 + 189454096 GGATCGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178492495 7 + 178775436 GGATCGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135437308 7 + 135778131 GGATCAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190537863 7 - 190850796 GGATCAG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17978733 7 -  59632846 GGATCCA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87681401 308 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=294978.000000
s hg38.chr4_KI270925v1_alt    302121 124 +    555799 GGCAGACATGTAGG---GAACCTTTGTCTGCAGCA------GAAAGTCTTTCCCC--A-CCCCCCATTGCTCTACTTCCCCAA-ATCGTTCAAAGCTCATTTCATCTAAGACACTGCTCTTCCAATAAAAGGTTTAC
s panTro4.chr4             193000401 124 + 193495092 GGCAGACATGTAGG---GAACCTTTGTCTGCAGCA------GAAAGTCTTTCCCC--A-CCCCCCATCGCTCTACTTCCCCAA-ATCGTTCAAAGCTCATTTCATCTAAGACACTGCTCTTTCAATAAAAGGTTTAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198082187 126 + 198332218 GGCAGACATGTAGG---CAAACTTTCTCTGCAGCA------GAAAGTCTTTTCCCCAC-CCCCCCATCACTCTACTTCCCCAA-ATTGCTCAAAGCTCATTTCATCTAAGACGCTGCTCTTTCAATGAAAGGTTTAC
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183679199 121 + 184069350 GGCAGACATGCAG----GACCCTTTGTCTGCAGCG--------GAGTCTTTCCCC--A-ACCCCCACCACTCTACCTCCCCAA-ATCGCTCAAAGCCCATTTCCTCTAAGATGCTGCTGTTTCAATAAAAGGTTTAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189068035 121 + 189454096 GGCAGACATGCAG----GACCCTTTGTCTGCAGCG--------GAGTCTTTCCCC--A-ACCCCCACCACTCTACCTCCCCAA-ATCGCTCAAAGCCCATTTCCTCTAAGATGCTGCTGTTTCAATAAAAGGTTTAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178492502 121 + 178775436 GGCAGGCATGCAG----GACCCTTTGTCTGCAGCG--------GAGTctttcccc--a-acccccaccactCTACCTCCCCAA-ATCGCTCAAAGCCCATTTCCTCTAAGATGCTGCTGTTTCAATAAAAGGTTTAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135437315 127 + 135778131 GGCAGACATGCAGGTTTGAACCTTTGTCTGCAGCG------GAGAGTCTTTCCCC--A-ACCCCCACCACTCTACCTCCCCAA-ATCGCTCAAAGCCCATTTCATCTAAGATGCTGCTGTTTCAATAAAAGGGTTAC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190537870 124 - 190850796 GGCAGACATGTAGG---GAACGTTTGTCTGCAGTG------GGGAGTCTTTCCCC--A-TGCCCCATGACTCTACTTCCCCAA-ATACCTCAAAACTCATTTCATCTAAGACGTTGCTCTGTAAACAAAAAGCTTAC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87681709 127 - 129401213 GGCAGGCAT--AGG---AAATATCTGTCTGCAGCCCCACAACCAAGTCTTTCCTT-----TTCCCATCACTTAGCCTTACTAACATGTCTCAAATCTCACTGAATCAAAGACACTGCTCTATCAAGAAAATTATTCC
i mm10.chr8                I 308 C 0
s canFam3.chr16             17978740 129 -  59632846 -CGAGACATATTAG---GAACATTTGTCTGCAGCT-CCAAGGTCAACCTGTCTTA--ATTCCCCTATTACTTTACCAACTAGA-ATCCTTCAAAACTCATATAATCTAGAATACTGTTCTTTCAATAAAATATCTAC
i canFam3.chr16            C 0 I 31
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=348725.000000
s hg38.chr4_KI270925v1_alt    302245 154 +    555799 CTCAGACTCACCAAACAGCTGATCCCCGTAGCGTGTTACATTCCACGAG----------AACCTAGGCACACAGAATGTCATGACTTGAAAACACGAGGCATTTGGACcaagggttggcaaactttttctataaaggatcagattgtaaatgttttaggttacc
s panTro4.chr4             193000525 154 + 193495092 CGCAGACTCACCAAAGGGCTGATCCCTGTAGCGTGTTACATTCCACGAG----------AACCTAGGCACACAGAATGTCATGACTTGAAAACATGAGGCATTTGGACcaagggttggcaaactttttctataaaggatcagattgtaaatgttttaggcttcc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198082313 154 + 198332218 CAGAGACTCACCAAATGGCTGATCCCTGTAACGTGTTACATTCCACAAG----------AACCTAGGCACACAGAATGTCATGACTTGAAAACATGAGGCATTTGGACcaagggttggcaaactttttctataaaggatcagattgtaaatgttttaggcttcg
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183679320 154 + 184069350 CAGAGACTCACCAAATGGCTGATCCCTATAACGTGTTACATTCCATGAG----------AACCTAAGCACACAGAACGTCACGACTTGAAAACATGAAGCATTTGGACTaaaggttggcacactttttctataaaggatcagattggaaatgttttaggcttca
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189068156 154 + 189454096 CAGAGACTCACCAAATGGCTGATCCCTATAACGTGTTACATTCCATGAG----------AACCTAAGCACACAGAACGTCACGACTTGAAAACATGAAGCGTTTGGACTaaaggttggcacactttttctataaaggatcagattggaaatgttttaggcttca
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178492623 154 + 178775436 CAGAGACTCACCAAATGGCTGATCCCTATAACGTGTTACATTCCATGAG----------AACCTAAGCACACAGAACGTCACGACTTGAAAACATGAAGCGTTTGGACTAAAGGTTGGcacactttttctataaaggatcAGATTGGAAATGTTTTAGGCTTCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135437442 154 + 135778131 CAGAGACTCACCAAATGGCTGATCCCTATAACGTGTTACATTCCACGAG----------AACCTAGGCACACACAGCGCCACGACTTGAAAACATGAAGCGTTTGGACTaaaggttggcacactttttctataaaggatcagattggaaatgttttaggcttca
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190537994 151 - 190850796 CAGAGACTCACCCGATGAATGCCTCCTATAAGGTGTGACATTTCACAGG----------AGCCTCGGCACAC-GAATGTCATGACTCGAGGACGTGAGGCATTTAGACGaagggctggcaaactttt--tataaaggattggattgtaaatgtttcaggcttcg
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87681836 148 - 129401213 AAGACAAGTATTAGCTGATGGTTCCCTGCAATGTATTATAATTCCAATGTATTTTATTAAACCAAGGCACACAGAATACTCAAA---GAACACTTAAGGTATTAGGATAAAGTG----------TTTTATATAAAAGTTGAGAT---AAATATTTTAGGCTTCA
i mm10.chr8                C 0 C 0
e canFam3.chr16             17978869  31 -  59632846 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=132611.000000
s hg38.chr4_KI270925v1_alt    302399 50 +    555799 tgagccaagagacaaaaatcaaagatattatgtt--gatattaataaaagaa
s panTro4.chr4             193000679 50 + 193495092 tgagccaagagacaaaaatcaaagatattatgtc--gatactaataaaagaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198082467 50 + 198332218 tgagccaagagacaaaaatcaaagatattatgtc--gatactaatgaaagaa
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183679474 49 + 184069350 tgagccaagagac-aaaatcaaagctgttatgta--gatgctaataaaagaa
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189068310 49 + 189454096 tgagccaagagac-aaaatcaaagctgttatgta--gatgctaataaaagaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178492777 49 + 178775436 TGAGCCAAGAGAC-AAAATCAAAGCTGTTATGTA--GATGCtaataaaagaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135437596 49 + 135778131 tgagccaagagac-aaaatcaaagctgttatgta--gatgctaataaaagaa
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190538145 47 - 190850796 tgagcca--agac-aaaatcaaacacattgtgta--ggtactaataaaagaa
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87681984 52 - 129401213 GGGGTTAAGAGAAAAAAGTCACAATTATTACTTCATGGTACTCATGGAAGAA
i mm10.chr8                C 0 I 302
s canFam3.chr16             17978900 49 -  59632846 tgggccaagagga-aaaatcagagacattatata--aatactaatatgagaa
i canFam3.chr16            I 31 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=25933.000000
s hg38.chr4_KI270925v1_alt    302449 16 +    555799 gagataaaataaattt
s panTro4.chr4             193000729 16 + 193495092 gagataaaataaattt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198082517 16 + 198332218 gagataaaataaattt
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183679523 11 + 184069350 gag-----ataaattt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189068359 11 + 189454096 gag-----agaaattt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178492826 11 + 178775436 gag-----ataaattt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135437645 11 + 135778131 gag-----ataaattt
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190538192 16 - 190850796 gagataaaacaaattt
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17978949 16 -  59632846 gagatcaaatgaattt
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87682036 302 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=417314.000000
s hg38.chr4_KI270925v1_alt    302465 150 +    555799 ccacaacatttt-tcttgacaaaattcaaactataacataatcatttagtt----tttgtttgttttgataatacaggcccacaaaagag-ataaatggaatcgtttgaggaggagataacattttgcttattggaagttcaaagttagttcccta
s panTro4.chr4             193000745 150 + 193495092 ccacaacatttt-tcttgacaaaattcaaactataacataatcatttagtt----tttgtttgttttgataatacaggcccacaaaagag-ataaatggaatcctttgaggaggagataacattttgcttattggaagttcaaagttagttcccta
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198082533 150 + 198332218 ccacaacatttt-tcttgacaaaattcaaactataacataatcatttagtt----tttgtttgttttgataatacaggtccacaaaagag-ataaatggaatcctttgaggaggagataatattttccttattggaagttcaaagttagttcccta
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183679534 146 + 184069350 ccacaacgtttt-tcttgacaaaattcaaact-----ataatcatttagtt----tttgtttgttttgataatacaggcccacgaaagagaaaaaattgaattctttgaggaggagataacattttgcttattggaagttcaaagttacttcccta
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189068370 146 + 189454096 ccacaacgtttt-tcttgacaaaattcaaact-----ataatcatttagtt----tttgtttgttttgataatacaggcccacgaaagagaaaaaatggaattctttgaggaggagataacattttgcttattggaagttcaaagttacttcccta
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178492837 146 + 178775436 CCACAACGTTTT-Tcttgacaaaattcaaact-----ataatcatttagtt----tttgtttgttttgataataCAGACCCACgaaagagaaaaaatgggatTCTTTGAGGAGGAGATAACATTTTGCTTATTGGAAGTTCAAAGTTACTTCCCTA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135437656 146 + 135778131 ccacaacgtttt-tcttgacaaaattcaaact-----ataatcatttcgtt----tttgtttgttttgataatacaggcccacaaaagagaaaaaatggaattctttgaggaggagataacattttgcttattggaagttcaaagttacttcccta
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190538208 151 - 190850796 ccacaagatttt-tcttaacaaaattcaaattatggcatcatcatttagtttttatttgcttgttttgatattacaggcctacaaatgag-ataaatggaattcctt---gaggagataacattttgcttattggaagttcaaagtcagttcccta
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87682338 142 - 129401213 ccTCACTGCttt-tcttgatatagttcaaaatatagcacagttgtttggtg----tacttttct-------ataccagcctccaaatgag-gcacacagaattctttaagaggaaaataacactttgattatttgtggttccaagttagctctc-a
i mm10.chr8                I 302 C 0
s canFam3.chr16             17978965 146 -  59632846 ccataaagctttaaattgataaaattcaaaatacagcataaccatttagta----ttt-----tttttataatacaggtctacaaataaa-gttaatggaattctttgggagggagatgacattttccttaattgaggttcaaagtaagttcccta
i canFam3.chr16            C 0 I 649
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=281064.000000
s hg38.chr4_KI270925v1_alt    302615 115 +    555799 gaaccaaattaatcccaaatgttcatccataaaaaccattctcagcctgtattgccacacataagcaggaggggctggatctggcctgggggctacagtttgcaatctctgGATT
s panTro4.chr4             193000895 115 + 193495092 gaaccaaattaatcccaaatgttcatccataaaaaccattctcagcctatgttgccacacataagcaggaggggctggatctggcctgggggctacagtttgcAATCTCCGGATT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198082683 115 + 198332218 gaaccaaattaattccaaatgttcatccataaaaaccattctcagcctgtgttgccacacataagcaggagaggctggatctggcctgggggctacggtttgcaatctctgGATT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183679680 115 + 184069350 gaaccaaattaatcccaaatgtacatccataaaaaccattctcagcctgttttgccacacataagcaggaggggctggatctggtctgggggctacaatgtgagatctctgGATT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189068516 115 + 189454096 gaaccaaattaatcccaaatgtacatccataaaaaccattctcagcctgttttgccacacataagcaggaggggctggatctggtctgggggctacaatgtgagatctctgGATT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178492983 115 + 178775436 GAACCAAATTAATCCCAAATGTACATCCATAAAAACCATTCTCAGCCTGTTTTGCCACACATAAGCAGGAGGGGCCGGATCTGGTCTGGGGGCTACAATGTGAGATCTCTGGATT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135437802 115 + 135778131 gaaccaaattaatcccaaatgtacatccataaaaaccattctcagcctgttttgccacacataagcaggaggggctggatctggtctgggggctacaatttgagatctctgGATT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190538359 115 - 190850796 gaaccaaattaatcccaaatgttcatccataaaaacgattctcagcctgtgctgccacatatcagcagcagggtctggatctggcccaggggctatagtttgccAGTTCTGGATT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87682480  91 - 129401213 gaatcaaa------acaaatgcttatctgtgagaattgcccttagctt-tgcttccacacatagacaaa-----------------cagAAGCTGCAGCCTGCCAGTTCCCGATT
i mm10.chr8                C 0 C 0
e canFam3.chr16             17979111 649 -  59632846 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=229243.000000
s hg38.chr4_KI270925v1_alt    302730 92 +    555799 TAGACTAATCTGCCTGTTATATACACAAG---GCATCTGAACCTCAGAGAC-TTAAGGATTGCTGAAAATCACAGGTCTTGTGGGAACATGGCAAG
s panTro4.chr4             193001010 92 + 193495092 TAGACTAATCTGCCTGTTATATATACAAG---GCATCTGAACCTCAGAGAC-TTAAGGATTGCTGAAAATCACAGGTCTTGTGGGAACATGGCAAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198082798 92 + 198332218 AAGACTAATCTGCCTATTATATATACAAG---GCATCTGAATCTCAGAGAC-TTAAGGATTGCTGAAAATCACAGGTCTTGTGGAAACATGGCAAG
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183679795 91 + 184069350 TAGACTAATCTGCCTGTTATAGATACAAG---GCATCTGAATCTCAGAGAC-TTAAGGATTGCTTAGAATCACAGG-CTTGTGGAAACATGGCAAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189068631 92 + 189454096 TAGACTAATCTGCCTGTTATAGATACAAG---GCATCTGAATCTCAGAGAC-TTAAGGATTGCTTAGAATCACAGGTCTTGTGGAAACATGGCAAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178493098 92 + 178775436 TAGACTAATCTGCCTATTATAGATACAAG---GCATCTGAATCTCAGAGAC-TTAAGGATTGCTTAGAATCACAGGTCTTGTGGAAACATGGCAAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135437917 92 + 135778131 TAGACTAATCTGTCTATTATAGATACAAG---GCATCTGAATCTCAGAGAC-TTAAGGATTACTTAGAATCACAGGTCTTGTGGAAACATGGCAAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190538474 84 - 190850796 TAGACTGAT----CTATTACACATACGAATCTGCATCTGAATCTCAGAGAC--------CTGCTTAAAATGACAAGTCTTAGGGAAACGTGACAAG
i calJac3.chr3             C 0 I 571
s mm10.chr8                 87682571 91 - 129401213 GACACCAACCTACCTAAATTATGTGTAAG---GAATTAGAACATCAGAGAT-TTGGGAACCATTCAAAGCCATAGAACTT-TTAAAATGGGGAAAA
i mm10.chr8                C 0 C 0
s canFam3.chr16             17979760 93 -  59632846 TAAACTACTCTGCTTATTTTGTAAATAAG---TGATCTAAACTCTACAGATGGTAGGTATTGCTCAAAGTCATAGAACCTACAGAAGCAAGACAAG
i canFam3.chr16            I 649 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=13487.000000
s hg38.chr4_KI270925v1_alt    302822 8 +    555799 CCCCTCAC
s panTro4.chr4             193001102 8 + 193495092 CCCCTCAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198082890 7 + 198332218 CCCCTCA-
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183679886 8 + 184069350 CCCCTCAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189068723 8 + 189454096 CCCCTCAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178493190 8 + 178775436 CCCCTCAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135438009 8 + 135778131 CCCCTCAC
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17979853 8 -  59632846 CATCTAAT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87682662 0 - 129401213 C
e calJac3.chr3             190538558 571 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=1030636.000000
s hg38.chr4_KI270925v1_alt    302830 437 +    555799  
s panTro4.chr4             193001110 437 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198082897 434 + 198332218  
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183679894 435 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189068731 435 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178493198 436 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135438017 438 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190539129 416 - 190850796  
i calJac3.chr3             I 571 C 0
s mm10.chr8                 87682662 370 - 129401213  
i mm10.chr8                C 0 I 52
s canFam3.chr16             17979861 570 -  59632846  
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=14796.000000
s hg38.chr4_KI270925v1_alt    303267 12 +    555799 ctctgtctgtct
s panTro4.chr4             193001547 12 + 193495092 ctatgtctGTCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198083331 12 + 198332218 ctctctcGGTCT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183680329 12 + 184069350 ctctctctgtcc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189069166 12 + 189454096 ctctctctgtcc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178493634 12 + 178775436 ctctctctgtct
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135438455 10 + 135778131 ctgtctCAGT--
i chlSab2.chr7             C 0 I 16
s calJac3.chr3             190539545 12 - 190850796 ctGTGTGTGTGT
i calJac3.chr3             C 0 I 2
s canFam3.chr16             17980431 11 -  59632846 -tttgccagcct
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87683032 52 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=14439.000000
s hg38.chr4_KI270925v1_alt    303279 11 +    555799 caccctCCTac
s panTro4.chr4             193001559 11 + 193495092 CACCTTCCTac
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198083343 11 + 198332218 CACCCTCCTAT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183680341  9 + 184069350 caccctcct--
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189069178  9 + 189454096 caccctcct--
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178493646 11 + 178775436 caccctcctac
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190539559 11 - 190850796 CACACTCCTac
i calJac3.chr3             I 2 C 0
s canFam3.chr16             17980442 11 -  59632846 ctctctctttc
i canFam3.chr16            C 0 I 42
e mm10.chr8                 87683032 52 - 129401213 I
e chlSab2.chr7             135438465 16 + 135778131 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=-798.000000
s hg38.chr4_KI270925v1_alt    303290 8 +    555799 acagacat
s panTro4.chr4             193001570 8 + 193495092 acagacat
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198083354 6 + 198332218 AC--ACAC
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178493657 6 + 178775436 ac--acac
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190539570 3 - 190850796 aca-----
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87683032 52 - 129401213 I
e canFam3.chr16             17980453 42 -  59632846 I
e chlSab2.chr7             135438465 16 + 135778131 I
e macFas5.chr5             189069187 0 + 189454096 C
e rheMac3.chr5             183680350 0 + 184069350 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=16319.000000
s hg38.chr4_KI270925v1_alt    303298 35 +    555799 gtacacacacgcgcacacacacgcacacacacaca
s panTro4.chr4             193001578 23 + 193495092 gtacacacacgcg------------cacacacaca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198083360 21 + 198332218 GTACACACACGTG--------------CACACACA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183680350  7 + 184069350 ----------------------------acacaca
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189069187  7 + 189454096 ----------------------------acacaca
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178493663 21 + 178775436 gtacacacatgag--------------cacacaca
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135438481 23 + 135778131 gtacacacatgcg------------cacacacaca
i chlSab2.chr7             I 16 C 0
s calJac3.chr3             190539573 22 - 190850796 -cacacacacgca------------catgcacaca
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87683032 52 - 129401213 I
e canFam3.chr16             17980453 42 -  59632846 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=113225.000000
s hg38.chr4_KI270925v1_alt    303333 46 +    555799 cGTTTCTCTGGTGAACCCTAAGCAATGCATTGACTCAGATAATCAT
s panTro4.chr4             193001601 44 + 193495092 cGTTTCTCTGGTGAACCCTAAGCAATGCATTGACTC--ATAATCAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198083381 46 + 198332218 CATTTCTCTGGTGAACCCTAAGCAATACATTAACTCAGATAATCAT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183680357 46 + 184069350 cgtttctctggtgaaccctaagcaatacaTTGACTCAGGTAATCAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189069194 46 + 189454096 tgtttctctggtgaaccctaagcaatacaTTGACTCAGGTAATCAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178493684 46 + 178775436 cGTTTCTCTGGTGAACCCTAAGCAATACATTGACTCAGGTAATCAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135438504 46 + 135778131 cGTTTCTCTGGTGAACCCTAAGCAATACATTGACTCAGGTAATCAT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190539595 39 - 190850796 cGTTTCTCTGGTG-------GTCAATACACTGCCCCAATTAATCAT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17980495 46 -  59632846 tctttctctggagaaccctgagcaatacaCTGACCAAATTATTCAC
i canFam3.chr16            I 42 I 135
e mm10.chr8                 87683032 52 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=693882.000000
s hg38.chr4_KI270925v1_alt    303379 277 +    555799 CTTATG-------------------------------------------------GGAAATGCTATGAAAAAAAG----------------AACCTAAACA-------------CACATACAAGCTTATGGTAATCGTGGGACACTTGTGTGAAGAAGCAAATGCAAC------TATTGTAATTCATAGCATTGAAGGTAATTTATTTACATTCATTAATTGCCTACAAGAtaag-tattgcaaatataatagcaaacaagcctgacccagccctgtcctctcgttgcttatattctaatgg-aaaagtaaaacaggacaaacag---aaaaAAAAAGTGCTGAATAGACAAATAATAAATAAAAA
s panTro4.chr4             193001645 278 + 193495092 CTTACG-------------------------------------------------GGAAATGCTATGAAAAAAAG----------------AACCTAAACA-------------CACATACAAGCTTATAGTAATCGTGGGACACTTGTGTGAAGAAGCAAATGCAAC------TATTATAATTCATAGCATTGAAGGTAATTTATTTACATTCATTAATTGGCTACAAGAtaag-tattgcaaatataatagcaaacaagcctgacccagccctgtcctctcattgcttatattctaatgg-aaaagtaaaacaggacaaacag--aaaaAAAAAAGTGCTGAATAGACAAATAATAAATAAAAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198083427 276 + 198332218 CTTATG-------------------------------------------------GGAAATGCTATGAAAAAAAG----------------AACCTAAACA-------------CACATACAAGCTTATGTTAATCATGGGACAATTGTGTGAAGAAGCAAATGCAAC------TATTATAATTCATAGCATTGAAAGTAATTTATTTACATTCATTAATTGCCTACAAGAtaag-tattgcaaatatagtagcaaataagccggacccagccctgtcctctcattgcttatattctaatgg-aaaagtaaaacaggacaaacag----aaaaAAAAGTGCTGAATAGACAAATAATAAATAAAAA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183680403 278 + 184069350 CTTACG-------------------------------------------------GGAAATGCTATGAAGAAAAG----------------AACCTAAACA-------------CACATACAAGCTTATGTTAATCGTGGGACGATTGTGTGAAGAAGCAAATGCAAC------TATTATAATTCATAGCATTGAAGGTAATTTATTTACATTCATTAACTGCCTACAAGATAAG-TACTGCAAATATAATAGCAAATAAGCCTGACCCAGCCTTGCCCTCTCATTGCTTATATTCTAATAG-AAAAGTAAAACAGGACCAACAG--AAAAAAAAAAGTGCTGAATAGACAAATAATAAATAAAAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189069240 278 + 189454096 CTTATG-------------------------------------------------GGAAATGCTATGAAGAAAAG----------------AACCTAAACA-------------CACATACAAGCTTATGTTAATCGTGGGACGATTGTGTGAAGAAGCAAATGCAAC------TATTATAATTCATAGCATTGAAGGTAATTTATTTACATTCATTAACTGCCTACAAGATAAG-TACTGCAAATATAATAGCAAATAAGCCTGACCCAGCCTTGCCCTCTCATTGCTTATATTCTAATAG-AAAAGTAAAACAGGACCAACAG--AAAAAAAAAAGTGCTGAATAGACAAATAATAAATAAAAA
i macFas5.chr5             C 0 I 338
s papAnu2.chr5             178493730 278 + 178775436 CTTATG-------------------------------------------------ggaaatgctatgaagaaaag----------------aaCCTAAACA-------------CACATACAAGCTTATGTTAATCGTGGGACGATTGTGTGAAGAAGCAAATGCAAC------TATTATAATTCATAGCATTGAAggtaatttatttacattcattAACTGCCTACAAGATAAG-TACTGCAAATATAATAGCAAATAAGCCTGACCCAGCCTTGCCCTCTCATTGCTTATATTCtaatag-aaaagtaaaacaggaccaacag--aaaaaaaaaagtgctgaatagacaaataataaataaaaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135438550 280 + 135778131 CTTATG-------------------------------------------------GGAAATGCTATGAAAAAAAG----------------AACCTAAGCA-------------CACATACAAGCTTATGTTAATCGTGGGACGATTGTGTGAAGAAGCAAATGCAAC------TATTATAATTCATAGCATTGAAGGTAATTTATTTacattcattaactgcctacaagataag-tactgcaaatataatagcaaataagcctgacccagccctgccctctcattgcttatattctaatag-aaaagtaaaacaggacaaacagaaaaAAAAAAAAGTGCTGAATAGACAAATGATAAATAAAAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190539634 275 - 190850796 CTTATG-------------------------------------------------GGAAATGCTATGAAAAATAG----------------AACCCAAACT-------------CACATACACGCTCATGTTGACCGTGGGACAATTGTGTGAAGAAGGGAATGCAGC------TATTACAATTCATAGCATTGAAGGTAATGTATTCACATTTATTAATTGCCTACAAGATAAA-TATTGCAAATGTAATAGT-AATAAGCCTGACTCAGCCCTGCCCTCTCATTGCTTATATTCTAATGGAAAAAATAAAACACAAC-AACAG----AAAAAAAGGTGCTGAATAGAAAAATAATCGATAAAAA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17980676 347 -  59632846 cctatgtctctgcctctctctctctctgtgactatcataaataaataaaaattaaaaaaaaattattaaaaaaaaaaaaaaaaGAAAAGATAACCCAAACTACTCCTACCCTCCCACACACAAACACACACAGATTTTGTGAC---------AAAAACTACATGCAACTAAACATATTATAATCCATAATATTTACTATTTttcattcatatttattaattgcctaccagataggatgttagagatacaatactgtataaaccagacccagccctgtacttccacggcttgttttctaatgg-ggaaaaaaagca-----aaaag----aaaaataagcatcaaatagacctgtaataaataaaaa
i canFam3.chr16            I 135 C 0
e mm10.chr8                 87683032  52 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=41449.000000
s hg38.chr4_KI270925v1_alt    303656 21 +    555799 CTG--ATGAACGCGCTATGTAAA-
s panTro4.chr4             193001923 21 + 193495092 CTG--ATGAGCGCGCTATGTAAA-
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198083703 21 + 198332218 CTG--ATGAACGCGCTACGTAAA-
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183680681 21 + 184069350 CTG--ATGAAAGCGCTATGTAAA-
i rheMac3.chr5             C 0 I 226
s macFas5.chr5             189069856 21 + 189454096 CTG--ATGAAAGCGCTATGTAAA-
i macFas5.chr5             I 338 C 0
s papAnu2.chr5             178494008 21 + 178775436 ctg--atgaaagcgctatgtaaa-
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135438830 21 + 135778131 CTG--ATGAAAGCGCTACGTAAA-
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190539909 20 - 190850796 TGG--ATGAAAGTGCCATGTAA--
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17981023 24 -  59632846 ctgccccaaaaatgctacatagaa
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87683032 52 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=86866.000000
s hg38.chr4_KI270925v1_alt    303677 45 +    555799 AACAAAAATGGGACTGACGGA---------GAGGGGCAGGAAATGCCTC----TCTGA
s panTro4.chr4             193001944 45 + 193495092 AACAAAAATGGGACTGACGGA---------GAGGGGCAGGAAATGCCTC----TCTGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198083724 49 + 198332218 AACAAAAATGGGACTGACGGA---------GAGGGGCAGGGAAGGTCTAAGGGTCTGA
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189069877 45 + 189454096 AACGAGAATGGGACTGACAGA---------AAGGGGCAGGAAAGGCCTC----TCTGA
i macFas5.chr5             C 0 I 774
s papAnu2.chr5             178494029 45 + 178775436 aacgaaaatGGGACTGACAGA---------GAGGGGTAGGAAAGGCCTC----TCTGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135438851 45 + 135778131 AACGAAAATGGGACTGACGGA---------GAGGGGCAGGAAAGGCCTC----TCTGA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190539929 45 - 190850796 ACCAAAAACGGGACTGACCGA---------GAGGGGCAGGAAAGGCCTC----TCAGA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17981047 54 -  59632846 aacaaaaaggagattggcagagaatgataggagGACCAGGAAAAGCCTC----TCAGA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87683032 52 - 129401213 I
e rheMac3.chr5             183680702 226 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=16186.000000
s hg38.chr4_KI270925v1_alt    303722 20 +    555799 CGGTCAGGTCTAAACGGAGA
s panTro4.chr4             193001989 20 + 193495092 TGGTCAGGTCTAAACGGAGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198083773 20 + 198332218 TGGTCAGGTCTAAACGGAGA
i ponAbe2.chr4             C 0 C 0
s chlSab2.chr7             135438896 20 + 135778131 TGGTCAGGTCTAAACAGTGA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190539974 20 - 190850796 AGGGCGGGTCTAAATAGGGA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17981101 20 -  59632846 AGTTCAAGACTTAAGAGTGA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87683032 52 - 129401213 I
e papAnu2.chr5             178494074  0 + 178775436 C
e macFas5.chr5             189069922 774 + 189454096 I
e rheMac3.chr5             183680702 226 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=16580.000000
s hg38.chr4_KI270925v1_alt    303742 17 +    555799 GGTCTTCCCTGAAACTT
s panTro4.chr4             193002009 17 + 193495092 GGACTTCCCTGAAACTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198083793 16 + 198332218 GGACTT-CCTGAAACTT
i ponAbe2.chr4             C 0 C 0
s chlSab2.chr7             135438916 17 + 135778131 GGACTTCCCTGAAACTT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190539994 16 - 190850796 GGACTT-CCTGATACTC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87683084 17 - 129401213 GGACTTCTCAGCAACTT
i mm10.chr8                I 52 I 6
s canFam3.chr16             17981121 17 -  59632846 GGAGTTAATTGAAATTC
i canFam3.chr16            C 0 C 0
e papAnu2.chr5             178494074  0 + 178775436 C
e macFas5.chr5             189069922 774 + 189454096 I
e rheMac3.chr5             183680702 226 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=34277.000000
s hg38.chr4_KI270925v1_alt    303759 22 +    555799 CAGGAAGGGGCAAAATTGAAGC
s panTro4.chr4             193002026 22 + 193495092 CAGGAAGGGGAAAAATTGAAGC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198083809 22 + 198332218 CAGGAAGGGGCAAAATTGAAGC
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189070696 20 + 189454096 CAGAAAGGGGCAGGA--AAGGC
i macFas5.chr5             I 774 I 8
s chlSab2.chr7             135438933 22 + 135778131 CAGGAAGGGGCAAAATTGAAGC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190540010 22 - 190850796 TAGGAAGGAGCTAACCTGAAGC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87683107 22 - 129401213 AAGAAAGGAGCATAGTAGAAGC
i mm10.chr8                I 6 C 0
s canFam3.chr16             17981138 22 -  59632846 CAGGAGGGGATAAAATTGAAGC
i canFam3.chr16            C 0 C 0
e papAnu2.chr5             178494074  0 + 178775436 C
e rheMac3.chr5             183680702 226 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=317740.000000
s hg38.chr4_KI270925v1_alt    303781 132 +    555799 TGAGGAAACAGC----ACAAACAGCCC-TGAAATGGAAAAGGTTTTCGATGCTTCACAGACCTGGAAGATCAGTGTGTGGGGGACGTGCAATATGAGACGAAGCCTGAAGCA--GATTGGGAATTTGGCTCCAGAGATG
s panTro4.chr4             193002048 132 + 193495092 TGAGGAAACAGC----ACAAACAGCCC-TGAAATGGAAAAGTGTTTCGATGCTTCACAGACCTGGAAGATCAGTGTGTGGGCGACGTGCAATATGAGACGAAGCCTTAAGCA--GATTGGGAATTTGGCTCCAGAGATA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198083831 132 + 198332218 TGAGGAAACAGC----ACAAACAGCCC-TGAAATGGAAAAGGGTTTAGATGCTTCACAGACCTGGAAGATCAGTGTGTGGGGGACGTGCAATATGAGACGAAGCCTTAAGCA--GACTGGGAATTTGGCTCCAGAGATG
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183680928 132 + 184069350 TGAGGAAACAGC----ACAAACAGCCC-TGAAATGAAAAACGGTTTAGACGCTTCACAGACCTGGAAGATCAGTAGGTGGGGGACGTGCCATATGAGACGAAGCCTTAAGCG--TATTGGGAATTTGGCTCCAGAGATG
i rheMac3.chr5             I 226 I 483
s macFas5.chr5             189070724 132 + 189454096 TGAGGAAACAGC----ACAAACAGCCC-TGAAATGAAAAACGGTTTAGACGCTTCACAGACCTGGAAGATCAGTAGGTGGGGGACGTGCGATATGAGACGAAGCCTTAAGCG--TATTGGGAATTTGGCTCCAGAGATG
i macFas5.chr5             I 8 C 0
s papAnu2.chr5             178494074 132 + 178775436 TGAGGAAACAGC----ACAAACAGCCC-CGAAATGAAAAACGGTTTAGACGCTTCACAGACCTGGAAGATCAGTAGGTGGGGGACGTGCGATATGAGACGAAGCCTTAAGCG--TATTGGGAATCTGGCTCCAGAGATG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135438955 132 + 135778131 TGAGGAAACAGC----ACAAACAGCCC-TGAAATGAAAAACGGTTTAGACGCTTCACAGACCTGGACGATCAGTAGGTGGGGGACGTGCGATATGAGATGAAGCCTTAAGCA--TATTGGGAATTTGGCTCCAGAGATG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190540032 132 - 190850796 CGAGGAAACAGC----ACAAACAGCCC-TGAAATGGAAAA-GGTTCAGAGGCTTCCCAGGCCTGGATGATCAGTGAGTGGG-GATGTGCAACATGAGGCAAAGCCTTAAGTAGTGGTTGGGAATCTGGCTCTGGGGATG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87683129 131 - 129401213 TGAGAAAACAGTGGGAAGGAGTATCCT-AGAAAC---AGATTTCTTTGTCTCTTCACAGACCCAGATG-CCAGCAAATGGTAGAAAGACCACAT-AGACAAAAACAGGTAGA--GAACAGGAACTGACCTCTAGTGACG
i mm10.chr8                C 0 C 0
s canFam3.chr16             17981160 125 -  59632846 -TAAGAAATGGA----ATGGACAAAATATACAAGAGAAGAATGTTTGGACTCTTCATAGACCTGGAAGGTCAATGAATGTCAGAAAAACAGTACAAGATAAAATCCTAAGCA------GAGAATCAGAATTTGAAG---
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=13910.000000
s hg38.chr4_KI270925v1_alt    303913 26 +    555799 GTGGT-GGTATGGACAA-TACAGTGCTG
s panTro4.chr4             193002180 26 + 193495092 GTGGT-GGTATGGAAAA-TACAGTGGTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198083963 26 + 198332218 GTGGT-GGGGTGGGTAA-TACAGTGGTG
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189070856 26 + 189454096 ACCAT-GGGAGGGGCAG-CACAGTACTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178494206 27 + 178775436 ACCGTgggggggggCAG-TACAGTACTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135439087 26 + 135778131 ACCGT-AGGGTGGGCAA-CACAGTACTG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190540164 23 - 190850796 GCGGT---GATGGGCAG--ATAGCGCTG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87683260 18 - 129401213 ---GT-TTTGTGACCA---CCAGTG---
i mm10.chr8                C 0 C 0
s canFam3.chr16             17981285 27 -  59632846 GTGGT-GGGGTGGGCAAATATTGTGTTC
i canFam3.chr16            C 0 C 0
e rheMac3.chr5             183681060 483 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=789495.000000
s hg38.chr4_KI270925v1_alt    303939 320 +    555799 -AGACTCCAACTCCTGCCCTTTGTCT-----CCACTCACCAACGGCAGATTCCCCCTGAAGATGGGCTGGGAGATAAATATCCCATTCAAATGGACCCTAAGTGAAGAGGCTCATGGGGAAA-ACC-TTCCTCCCATTGCACACCCACTGCAGGCAGAGCCTTCCCAA--GCTCCGTCCAGGCCTC-CT-GCCTAGTTATCTACGGGGTGAATCAGTCCACAGAGAAACACTCACCAAAATGTCAGCTGGACTTCAACAGGAAGGGTCAAGCTCACAGGAAATTATATGAGGTTTTTAGAAAATTACAACAAATTCAACTG-TTTGTAGTCAG
s panTro4.chr4             193002206 320 + 193495092 -AGACCCCAACTCCTGCCCTTTGTCT-----CCACTCACCAACGGCAGATTCCCCCTGAAGATGGGCTGGGAGATAAATGTCCCGTTCAAATGGACCCTAAGTGAAGAGGCTCATGGGGAAA-ACC-TTCCTCCCATTGCACACCCACTGCAGGCAGAGCCTTCCCAA--GCTCTGTCCAGGCCTC-CT-GCCTAGTTATCTACGGGGTGAATCAGTCCACAGAGAAACACTCACCAAAATGTCAGCTGGACTTCAACAGGAAGGGTCAAGCTCAAAGGAAATTATATGAGGTTTTTAGAAAATTACAACAAATTCAACTC-TTTGTAGTCAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198083989 320 + 198332218 -AGACCCCGACTCCTGCCCTTTGTCT-----CCACTCACCAACGGCAGATTCCCCCTAAAGATGGGCTGGGAGAGAAACATCCCGTTCAAATGGACCCTAAGTGAAGAGGCTCATGGGGAAA-ACC-TTCCTCCCGTTGCACACCCACTGCAAGCAGAGCCTTCCCAA--GCTCTGTCCGGGCCTC-CT-GCCTAGCTATCTACGGGGTAAATCAGTCCACAGAGAAACACTCACCAAAATGTCAGCTGAACTTCAACAGGAAGGGTCAGGCTCAAAGGAAATTATACGAGGTTTTTAGAAAATTACAACAAATTCAACTA-TTTGTAGTCAG
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183681543 300 + 184069350 -AGACCCCAACTCCTGCCCTTTGTCT-----CCACTCACCAACAGCAGATTCCTCCTGAAGATGGGCTGGGAGAGAAACGTCCTGTTCAAATGGACCCTCAGTGAAGAGGCTCATGGGGAAA-ACC-TTCCTCGCATTGCACACCAGCTGCAAGCAGAGCCTTCCCAA--GCTACGTCCAGGCCTT-CT-GCCT-GCTGTCTACTGGGTGAATCAATCCACAGAGAAACACTTACC-AAATGTCAGTTGGACTTCAAC------------------AGGAAATTATACTAGGTTTCTAGAAAATTACAACAAATTCAACTG-TTTGTAGTCAG
i rheMac3.chr5             I 483 I 23
s macFas5.chr5             189070882 300 + 189454096 -AGACCCCAACTCCTGCCCTTTGTCT-----CCACTCACCAACGGCAGATTCCCCCTGAAGATGGGCTGGGAGAGAAACGTCCTGTTCAAATGGACCCTCAGTGAAGAGGCTCATGGGGAAA-ACC-TTCCTCGCATTGCACACCAGCTGCAAGCAGAGCCTTCCCAA--GCTACGTCCAGGCCTT-CT-GCCT-GCTGTCTACTGGGTGAATCAATCCACAGAGAAACACTTACC-AAATGTCAGTTGGACTTCAAC------------------AGGAAATTATACTAGGTTTCTAGAAAATTACAACAAATTCAACTG-TTTGTAGTCAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178494233 300 + 178775436 -AGACCCCAACTCCTGCCCTTTGTCT-----CCACTCACCAACGGCAGATTCCCCCTGAAGATGGGCTGGGAGAGAAACGTCCTGTTCAAATGGACCCTAAGTGAAGAGGCTCATGGGGAAA-ACC-TTCCTCACATTGCACACCAGCTGCAAGCAGAGCCTTCCCAA--GCTACGTCCAGGCCTT-CT-GCCT-GCTGTCTACTGGGTGAATCAATCCACAGAGAAACACTTACC-AAATGTCAGTTGGACTTCAAC------------------AGGAAATTATACTAGGTTTCtagaaaattacaacaaattcAACTG-TTTGTAGTCAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135439113 300 + 135778131 -AGACCCCAACTCCTGCCCTTTGTCT-----CCACTCACCAACGGCAGATTCCCCCTGAAGACGGGCTGGGAGAGAAACGTCCTGTTCAAATGGACCCTAAGTGAAGAGGCTCATGGGGAAA-ACC-TTCCTCACATTGCACACCAGCTGCAAGCAGAGCCTTCCCAA--GCTACGTCCAGGCCTT-CT-GCCT-GCTGTCTACTGGGTGAATCAATCCACAGAGAAACACTTACC-AAATGTCAGTTGGACTTCAAC------------------AGGAAATTATACTAGGTTTTTAGAAAATTACAACAAATGCAACTG-TTTGTAGTCAG
i chlSab2.chr7             C 0 I 23
s calJac3.chr3             190540187 313 - 190850796 -AGACTCCAGC-CCTGCCCTCTGCCC-----TCACTC----ACGGCAGATTCCTCCTGAAGATGGACTGGGAGAGGAATGTCCCACGCAAATGAACCTCAAGTGGAGAGGCTCATGGCGAAA-GCC-TCTCTCCCACTGCATGCCAACTGCAAGCGGAGCCTCCCCGA-CCCCACATTCAGACCTC-CC-TCCTGGCTATTTACTCAGTGAGTCAGTCTAAAGAGAAACGCCTA---AAGTGTCAGCTGGTCTTCAATCGGAAGGGTCAAGCCCAAAGGAAGTTCTCCCAGATTTTTAGGAAATTACAACAAATTCAACTG-TTTGTATTCAG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87683278 307 - 129401213 -------------------TTTGTCTCTCTCCCAATTACTTTAATCAGATGTCTCCTAAAAGTGAACTGAAAGAGAAATGTCCCATTCAAGTTGAGCCTAA-TGGGCCAACTCAAGGAGAAACATT-TTCCTCACACTGCACATCGGGTACACACAGGGTCTTCATAATCCCTGGGTCCAAGCCTCACT-ATATAACTGTCTACCCA-TGAATCAA--CAGAGTAAAATAGTGTCC-AAATGCCAGCCACATTTCAGGGGGAGAGATCCAGCTCAGAGCAAATCTTAATAGATGTTTAAGGAATTATGACAAAGAATGTTGATTTGCAAAGAG
i mm10.chr8                C 0 C 0
s canFam3.chr16             17981312 310 -  59632846 CATCCCCCAACACGT-CTTTTTGTCT-----CTGCTCACCAATG---------TACTAAAAATGGATTAGAAGAGTAATTTCCCAT-CAAATTGACCCAAAGTGGACAGATTCATGAAGAAA-ATCATTCCTCACATTCTATACCAACTGCAGGCAGGGCCTTCCCAA--TCTGTGCTCACGCCTC-CCAATATATCTATCTACACAATAAATCAGTT--GAGATGAATATTCATCAAAATGTCAGCTAGACTTCAACAAGAGGGATCAAGCTCAGAGTAAATCATAGTAGGTTTGGGGGGAATTGTTACGAAGTCAACTT-TTtgtattcag
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=11545.000000
s hg38.chr4_KI270925v1_alt    304259 10 +    555799 TAACTAACTC
s panTro4.chr4             193002526 10 + 193495092 TACCTAACTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198084309 10 + 198332218 CACCTAACTC
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189071182  8 + 189454096 --CTTGGCTT
i macFas5.chr5             C 0 I 15
s papAnu2.chr5             178494533  8 + 178775436 --CTTGGCTT
i papAnu2.chr5             C 0 I 15
s calJac3.chr3             190540500 10 - 190850796 CGCCTGACTC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87683585 10 - 129401213 CAACTAACTC
i mm10.chr8                C 0 C 0
s canFam3.chr16             17981622 10 -  59632846 cacttaattc
i canFam3.chr16            C 0 C 0
e chlSab2.chr7             135439413 23 + 135778131 I
e rheMac3.chr5             183681843 23 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=108163.000000
s hg38.chr4_KI270925v1_alt    304269 42 +    555799 AGCGCCTAGCGTATAAG----GCTCAACAAATCATATGGAAAgtta
s panTro4.chr4             193002536 42 + 193495092 AGCGCCTAGCATATAAG----GCTCAACAAATCATATGGAAAgtta
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198084319 42 + 198332218 AGTGCCTAGCATATAAG----GCTCAACAAATCATATGGAAAgtta
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183681866 42 + 184069350 GGTGCCCAGCATACAAG----CCTCAACAAATCATATGGAAAgtta
i rheMac3.chr5             I 23 C 0
s macFas5.chr5             189071205 42 + 189454096 GGTGCCCAGCATACAAG----CCTCAACAAATCATATGGAAAgtta
i macFas5.chr5             I 15 C 0
s papAnu2.chr5             178494556 42 + 178775436 GGTGCCCAGCATACAAG----CCTCAACAAATCTTATGGAAAGTTA
i papAnu2.chr5             I 15 C 0
s chlSab2.chr7             135439436 42 + 135778131 GGTGCCCAGCATATAAG----GCTCAACAAATCTTATGGAAAgtta
i chlSab2.chr7             I 23 C 0
s calJac3.chr3             190540510 42 - 190850796 AGTGCATATCACATAAG----GCTCAACAAATCATACAGAAAGTTA
i calJac3.chr3             C 0 I 20
s mm10.chr8                 87683595 46 - 129401213 AATGTATGGACTATAGGAAATGTTCAATACATCCTACAGGATGCTA
i mm10.chr8                C 0 I 3
s canFam3.chr16             17981632 46 -  59632846 agtgcctggcatagagcaaatgaccaacaaatattatagaatatta
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=2300.000000
s hg38.chr4_KI270925v1_alt    304311 1 +    555799 t
s panTro4.chr4             193002578 1 + 193495092 t
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198084361 1 + 198332218 t
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183681908 1 + 184069350 t
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189071247 1 + 189454096 t
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178494598 1 + 178775436 T
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135439478 1 + 135778131 c
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190540572 1 - 190850796 t
i calJac3.chr3             I 20 C 0
s canFam3.chr16             17981678 1 -  59632846 t
i canFam3.chr16            C 0 I 829
e mm10.chr8                 87683641 3 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=731295.000000
s hg38.chr4_KI270925v1_alt    304312 355 +    555799 ctggtgtaaatacccagcgttcctggtctcgtgccaggaagatttagaacacagacacacaggaagagtttaggagcagatgtttaataggcaaaagaaagaggaaggagaatag-tctctctctagtg----agagagagagagtttcccaaagggaagaccagc-cggcaaggagtgtgcaggattttttaggcaggcttgaggaggcggtgtctgatttccccagagcttaca-------------------taggtttacacggcatgcggagaaggccggccaccccacccgaatcttattatgcaaatggactttccacttgaccggtgccatc-ttgtctgctccttcctgtacacgtggttggcaaagggaag
s panTro4.chr4             193002579 359 + 193495092 ctggtgtaaatacccagggttcatggtcttgtgccaggaagatttagaacacaaacacacaggaagagtttaggagcagatgtttaataggcaaaagaaagagaaaggagaatag-tctctctctagtgagaaagagagagagagtttcccaaagggaagaccagc-cagcaaggagtgtgcaggattttttaggcaggcttgaggaggcggtgtctgatttccctagagcttaca-------------------taggtttacacggcatgcggagaaggctggccaccccatccgaatcttattatgcaaatggactttccacttgaccggtgccatc-ttgtctgctccttcctgtacacgtggttggcaaagggaag
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198084362 359 + 198332218 ctggtgtaaatacccagggttcatcgtcttgcgccgggaagatttagaacacagacacacaggaagagtttaggagcagatgtttaataggcaaaagaaagagaaaggagaatag-tctctctctagtgagagagagagagagagtttcccaaagggaagaccagc-cggcaaggagtgtgccggattttttaggcaggcttgaagaggcgatgtctgatttccgtagagcttaca-------------------taggtttacacagcatgcggagaaggctggtcgccccaccagaatcttattatgcaaatggactttccacttgaccggtgccatc-ttgtctgctccttcctgtacatgtggttggcaaagggaag
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183681909 351 + 184069350 ctggtgtaaatacccagggttcatcgtcttgcgcggcgaagatttagaacacagacacacaggaggagtttaggagcagaggtttaataggcaaaagaaagagaaaggagaatag-tctctctctagggag--agagaaagggggtttcccaaagggaagaccag--gggcaaggagtgtgcaggactttttaggcaggcttgaggaggcggtgtctgatttacgtagagctaaca-------------------taggtttacatagcatgt----aaggctggccaccccacc-gcatcttattatgcaaatggactttccacttgaccggtgccatc-ttgtctgctccttcctgtacacgtggctggcaaagggaag
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189071248 351 + 189454096 ctggtgtaaatacccagggttcatcgtcttgcgcggcgaagatttagaacacagacacacgggaggagtttaggagcagaggtttaataggcaaaagaaagagaaaggagaatag-tctctctctagggag--agagaaagggggtttcccaaagggaagaccag--gggcaaggagtgtgcaggactttttaggcaggcttgaggaggcggtgtctgatttacgtagagctaaca-------------------taggtttacatagcatgt----aaggctggccaccccacc-gcatcttattatgcaaatggactttccacttgaccggtgccgtc-ttgtctgctccttcctgtacacgtggctggcaaagggaag
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178494599 352 + 178775436 CTGGTGTAAATACCCAGGGTTCATCGTCTTGTGCGGCGAAGATttagaacacagacacacaggaggagtttaggagcagaggtttaataggcaaaagaaagagaaaggagaatag-tCTCTCtctagggag--agagaaagggggttTCCCAAAGGGAAGACCAG--GGGCAAGGAGTGTGCAGGACTTTTTAGGCAGgcttgaggaggcggtgtctgatttacgTAGAGCTAACA-------------------TAGGTTTACATAGCATGT----AAGGCTGGCCACCCCACc-gaatcttattatgcaaatggattTTCCACTTGACCGGTGCCATCTTTGTCTGCTCCTTCCTGTACACGTGGCTGGCAAAGGGAAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135439479 350 + 135778131 ctggtgtaaatacccgggattcatcgtcttgtgtggcgaagatttagaacacagacacacaggaggagtttaggagcagaggtttaataggcaaaagaaggagaaaggagaatag-tctctctctagggcg--agagaaagagggtttcccaaagggaagacc-g--gggcaaggagtgtgcaggattttttaggcaggcttgaggaggcggtgtctgatttatgtagagctaaca-------------------taggtttacgtagcatgg----aaggctggccgccccacc-gaatcttattacgcaaatagactttccacttgaccggtgccatc-ttgtctgctccttcctgtacacgtggctggcaaagggcag
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190540573 360 - 190850796 ctggtgtaaatacct----------gtcttgtgccaggaagagttagaacacagatacacagagaaagtttagaagcagaggttttataggcaaaaga--gagaaaggagaatagccctgcctctaatgag--agaaagag-----ttgtgaaagggaagaccagcgggcccaggagtgtgccgggtttcagaggcagacttgagga-gcggtgcctgattcacgtagagcttacggattggtctgattaggtgtgaggtttacacagcaaacggcaaaggctggccaacccaccctcatcttcttataaaaataagatttccatttgaccggtgccgtc-ttatctgctccttacagtacacatggttggcaaagggaag
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87683641   3 - 129401213 I
e canFam3.chr16             17981679 829 -  59632846 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=400284.000000
s hg38.chr4_KI270925v1_alt    304667 234 +    555799 gggagatggagcctccgttttgaacatgcctagtccccgtagctttttcctgctgaccttcacccatgcaagcttgccgctggcttgtctatgtctgcagctccatcttacaggctgatctttgttagacaatgattttggggctgcttttcattaaaaagcaaaacctactgaggattcccataccctcactatctgcctaagcagtttcttcttaacgcctatatcGTTAAG
s panTro4.chr4             193002938 234 + 193495092 gggagatggagcctctgttttgaacatgcctagtccccgtagctttttcctgctgaccttcacccatgcaagcttgccgctggcttgtctatgtctgcagctccatcttacaggctgatctttgttagacaatgattttggggctgcttttcattaaaaagcaaaacctactgaggattcccataccctgactatctgcctaagcagtttcttcttaacgcctatatcaTTAAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198084721 234 + 198332218 gggtgatggagcctctgttttgaacatgcctagtccccgtagctttttcctgctgaccttcaccggtgcaagcttgctgctggcttgtctatgtctgcagctccatcttacaggctgatctttgttagacaatgatttgggggctgcttttcattaaaaagcaaaacctattgaggattcccatactctcactatctgcctaagcagtttcttcttaatgcctatatcaTTAAG
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183682260 233 + 184069350 gggagatggagccgccctgttgaacatgcctagtcccagtagctttttcctgctgaccttcacccctgccagcttccagctgccttgtctatgtctgcagctcaatcttacagggtgatctttgttagaaaattattttcgggctgcttttcattaaaaaggaaaa-ccactgaggatctccataccctcactatctgtctaagcagtttcttcttaacgcctatgtcTTTAAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189071599 233 + 189454096 gggagatggagccgccgtgttgaacatgcctagtcccagtagctttttcctgctgaccttcacccctgccagcttccagctgccttgtctatgtctgcagctcaatcttacagggtgatctttgttagaaaattattttcgggctgcttttcattaaaaaggaaaa-ccactgaggatctccataccctcactatctgtctaagcagtttcttcttaacgcctatgtcTTTAAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178494951 233 + 178775436 GGGAGATGGAGCCGCTGTGTTGAACATGCCTAGTCCCAGTAGCTTTTTCCTGCTGACCTTCACCCCTGCCAGCTTCCAGCtggcttgtctatgtctgcagctcaatcTTACAGGGTGATCtttgttagaaaattattttcgggctgcttttcattaaaaaggaaaa-ccacTGAGGATTCCCATACCCTCACTATCTGTCTAAGCAGTTTCTTCTTAACGCCTATGTCTTTAAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135439829 234 + 135778131 gggagatggagccgccgtgttgaacatgcctagtcccggtagctttttcctgctgaccttcacccctggaagcttccagctggcttgtctatgtctgcggctcaatcttacagggtgatctttgttagaaaatgattttcaggctgcttttcattaaaaaggaaaacccactgaggattcccataccctcactatctgtctaagcagtttcttcttaacgcctgtgtcTTTAAG
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87683641   3 - 129401213 I
e canFam3.chr16             17981679 829 -  59632846 I
e calJac3.chr3             190540933   0 - 190850796 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=22134.000000
s hg38.chr4_KI270925v1_alt    304901 10 +    555799 AGAGATATTA
s panTro4.chr4             193003172 10 + 193495092 AGAGATATTA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198084955 10 + 198332218 AGAGATATTA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183682493 10 + 184069350 AGAGATATTA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189071832 10 + 189454096 AGAGATATTA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178495184 10 + 178775436 AGAGATATTA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135440063 10 + 135778131 AGAGATATTA
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87683644 10 - 129401213 AGGGTTTTTA
i mm10.chr8                I 3 C 0
e canFam3.chr16             17981679 829 -  59632846 I
e calJac3.chr3             190540933  0 - 190850796 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=117965.000000
s hg38.chr4_KI270925v1_alt    304911 70 +    555799 TGCAGCTTAGAGTTATTAGGGT-TTGTGAAATAACA------------AATAAAGAGATAAAAGGTTTTTGTGTGTATTGGTG
s panTro4.chr4             193003182 70 + 193495092 TGCAGCTTAGAGTTATTAGGGT-TTGTGAAATAACA------------AATAAAGAGATAAAAGGTTTTTGTGTGTATTGGTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198084965 66 + 198332218 TGCAGCTTAGTGTTATTAGGGT-TTGTGAAATAAC----------------AAAGAGATAAAAGGTTTTTGTGTGTATTTGTG
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183682503 65 + 184069350 TGAAGCTTAGTGTTATTAGAGT-TTGTGAAATAAC----------------AAAGAGAT-AAAGGTTTTTGTGTGTATTGGTG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189071842 65 + 189454096 TGAAGCTTAGTGTTATTAGAGT-TTGTGAAATAAC----------------AAAGAGAT-AAAGGTTTTTGTGTGTATTGGTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178495194 65 + 178775436 TGAAGCTTAGTGTTATTAGAGT-TTGTGAaataac----------------aaagagat-aaaagtttttgtgtgtattggtg
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135440073 63 + 135778131 TGAAGCTTAGTGTTATTAGAGT-TTGTGAAATAAC------------------AGAGAT-AAAGGCTTTTGTGTGTATTGGTG
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87683654 81 - 129401213 TGCAACTTTGTATCATTAGAGC-TCAAGAAATAACAGTAGAATCAATGAGCAGAAAGAG-TCAGGATTTTATGTTCCTTAGTG
i mm10.chr8                C 0 I 63
s canFam3.chr16             17982508 74 -  59632846 tgttgATCAAAACTATAAAGGTCTTGTTAAATAAA---TAAGCAAACAGATAAAAAGAC-TCAGGTTTTTTTGTGTAT-----
i canFam3.chr16            I 829 C 0
e calJac3.chr3             190540933  0 - 190850796 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=935453.000000
s hg38.chr4_KI270925v1_alt    304981 497 +    555799  
s panTro4.chr4             193003252 501 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198085031 519 + 198332218  
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183682568 506 + 184069350  
i rheMac3.chr5             C 0 I 659
s macFas5.chr5             189071907 512 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178495259 512 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135440136 519 + 135778131  
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17982582 442 -  59632846  
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87683735  63 - 129401213 I
e calJac3.chr3             190540933   0 - 190850796 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=4249.000000
s hg38.chr4_KI270925v1_alt    305478 11 +    555799 ---ATCTGATGGGG-----------------
s panTro4.chr4             193003753 11 + 193495092 ---ATCTGATGGGG-----------------
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198085550 11 + 198332218 ---ATCTGAGGCAG-----------------
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189072419 11 + 189454096 ---GTTTGGCGGGG-----------------
i macFas5.chr5             C 0 I 13
s papAnu2.chr5             178495771 11 + 178775436 ---GTTtggcgggg-----------------
i papAnu2.chr5             C 0 I 13
s chlSab2.chr7             135440655 11 + 135778131 ---GTTTGGTGGGG-----------------
i chlSab2.chr7             C 0 I 748
s canFam3.chr16             17983024 31 -  59632846 ATTGTGTGCTTGGGAAGTGGGAAAAAAAGGT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87683735 63 - 129401213 I
e calJac3.chr3             190540933  0 - 190850796 C
e rheMac3.chr5             183683074 659 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=12305.000000
s hg38.chr4_KI270925v1_alt    305489 9 +    555799 GGCAGTACT
s panTro4.chr4             193003764 9 + 193495092 GGCAGTACT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198085561 9 + 198332218 GGCAGTACT
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189072443 9 + 189454096 GGCAGTACT
i macFas5.chr5             I 13 I 723
s papAnu2.chr5             178495795 9 + 178775436 ggcagtACT
i papAnu2.chr5             I 13 C 0
s canFam3.chr16             17983055 9 -  59632846 GGCAATACT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87683735 63 - 129401213 I
e calJac3.chr3             190540933 0 - 190850796 C
e chlSab2.chr7             135440666 748 + 135778131 I
e rheMac3.chr5             183683074 659 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=4230.000000
s hg38.chr4_KI270925v1_alt    305498 3 +    555799 GAA
s panTro4.chr4             193003773 3 + 193495092 GAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198085570 3 + 198332218 GAA
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189073175 3 + 189454096 GAA
i macFas5.chr5             I 723 C 0
s papAnu2.chr5             178495804 3 + 178775436 GAA
i papAnu2.chr5             C 0 I 965
s canFam3.chr16             17983064 3 -  59632846 GAA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87683735 63 - 129401213 I
e calJac3.chr3             190540933 0 - 190850796 C
e chlSab2.chr7             135440666 748 + 135778131 I
e rheMac3.chr5             183683074 659 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=597.000000
s hg38.chr4_KI270925v1_alt    305501 3 +    555799 CCA
s panTro4.chr4             193003776 3 + 193495092 CCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198085573 3 + 198332218 TTG
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189073178 3 + 189454096 TTG
i macFas5.chr5             C 0 C 0
s canFam3.chr16             17983067 3 -  59632846 CTG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87683735 63 - 129401213 I
e calJac3.chr3             190540933 0 - 190850796 C
e chlSab2.chr7             135440666 748 + 135778131 I
e papAnu2.chr5             178495807 965 + 178775436 I
e rheMac3.chr5             183683074 659 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=66863.000000
s hg38.chr4_KI270925v1_alt    305504 42 +    555799 GTTTTATAATTTCTTCTGTAGAGGCCAAACCAAAAAAGCCTA
s panTro4.chr4             193003779 41 + 193495092 GTTTTATAATTTCTTCTGTAGAGGCCAAA-CAAAAAAGCCTA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198085576 42 + 198332218 GTTTTATAATTTCTTCTGTAGCGGCCAAACCAAAAAAGCCTA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183683733 42 + 184069350 GTTTTATCATTTCTTCTGTAGAGGCCAAGCCAAAAAAGCCTA
i rheMac3.chr5             I 659 C 0
s macFas5.chr5             189073181 42 + 189454096 GTTTTATCATTTCTTCTGTAGAGGCCAAGCCAAAAAAGCCTA
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135441414 42 + 135778131 GTTTTATAATTTCTTCTGTAGAGGGCAAGCCAAAAAAGCCTA
i chlSab2.chr7             I 748 C 0
s canFam3.chr16             17983070 42 -  59632846 TCTTTATAATTCCATCTGTAGAGACCAAGCCAAAGATGCCTA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87683735 63 - 129401213 I
e calJac3.chr3             190540933  0 - 190850796 C
e papAnu2.chr5             178495807 965 + 178775436 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=448756.000000
s hg38.chr4_KI270925v1_alt    305546 231 +    555799 gaatgaatgaatgtaactgtgaatgaataaac-aaatgTGTTTCCAAAAATAAGTGATTCTTATATTAGACCATATTTTGAAAGATCTCAAAGTCCTTTTTATAAACTCCATTTGTCGAGAAAAATAACTCCTTTTATTAGGTTCCCTCTCAAGGATGTAGAACATACAGACTTGGG----CAT-------GAGGAAACATTTAAGAATCTCAGTATTTAACATTTACTAGGAGGACG--TGCCT
s panTro4.chr4             193003820 231 + 193495092 GAATGAATGAATGTAACTGTGAATGAATAAAC-AAATGTGTTTCCAAAAATAAATGATTCTTATATTATATCATATTTTGAAAGATCTCAAAGTCCTTTTTATAAACTCCATTTGTCAAGAAAAATAACTCCTTTTATTAGGTTCCCTCTCAAGGATGTAGAACATACAGACTTGGG----CAT-------GAGGAAACATTTAAGAATCTCAGTATTTAACATTTACTAGGAGCACG--TGCCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198085618 231 + 198332218 GAATGAATGAATGCAACTGTGAATGAATAAAC-ACATGTGTTTCCAAAAATAAATGATTCTTATATTAGATCATATTTTGAAAGATCTCAAAGTCCTTTTTATGAACTCCATTTACTGAGAAAAATAACTCCTTTTATTAGGTTCCCTCTCAAGGATGTAGAACATACAGACTTGGG----GAT-------GAGGAAACATTTAAGAATCTCAGTATTTAACATTTACTAGGAGCACG--TGCCT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183683775 229 + 184069350 GAATGAATGAATGTAACTGTGAATGAATAAAC-AAATGTGTTTCCAAAAATAAATGATTCTTATATTAGATCATATTGTGAAAGATCTCAAAGTCCTTTTTATGAACTCCATTTATTGAGAAAAATAACTCCTTTCATTAGGTTCCCTCTCAGGGATACAGAA--TACAGACTGGGG----GAT-------GAGGAAACATTTAAGAATCTCAGTATTTAACATTTACTAGGAGCACG--CGCCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189073223 229 + 189454096 gaatgaatgaatgtaactgtgaatgaataaac-aaatgTGTTTCCAAAAATAAATGATTCTTATATTAGATCATATTGTGAAAGATCTCAAAGTCCTTTTTATGAACTCCATTTATTGAGAAAAATAACTCCTTTCATTAGGTTCCCTCTCAGGGATACAGAA--TACAGACTGGGG----GAT-------GAGGAAACATTTAAGAATCTCAGTATTTAACATTTACTAGGAGCACG--TGCCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178496772 231 + 178775436 gaatgaatgaatgtaactgtgaatgaataaac-aaatgtgtttccaaaaataaatgattcttaTATTAGATCATATTGTGAAAGATCTCAAAGTCCTTTTTATGAACTCcatttattgagaaaaataactCCTTTCATTAGGTTCCCTCTCAGGGATACAGAACCTACAGACTGGGG----GAT-------GAGGAAACATTTAAGAATCTCAGTATTTAACGTTTACTAGGAGCACG--CGCCT
i papAnu2.chr5             I 965 C 0
s chlSab2.chr7             135441456 231 + 135778131 GAATGAATGAATGTAACTGTAAATGAATAAAC-AAATGTGTTTCCAAAAATAAATGATTCTTATATTAGATCATATTGTGAAAGATCTCCAAGTCCTTTTTATGAACTCCATGTATTGAGAAAAATAACTCCTTTCATTAGGTTCCCTCTCAGGGATACAGAACCTACAGACTGGGG----GAT-------GAGGAAACATTTAAGAAGCTCAGTATTTAACGTTTACTAGGAGCACG--CACCT
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17983112 216 -  59632846 --------------------GAATGAATAAACAAAATGAGTTTTCTAAAATAAATCTTTC-----TTAGATAGTATTTTAGAAGTTCCAAATCTAACATTTGGAA----CATTTATGGGAAACAATAACCCCTTCTATCAAGTTGCATCTCAGTTTTATAGAACATACAGCCTGGggaggagatagtggcagggggcacatttaagaatagtaacatctaatattcacgtagaagttgattgcat
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87683735  63 - 129401213 I
e calJac3.chr3             190540933   0 - 190850796 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=1980990.000000
s hg38.chr4_KI270925v1_alt    305777 935 +    555799  
s panTro4.chr4             193004051 936 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198085849 936 + 198332218  
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183684004 962 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189073452 904 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178497003 898 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135441687 902 + 135778131  
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87683798 891 - 129401213  
i mm10.chr8                I 63 I 1456
s canFam3.chr16             17983328 946 -  59632846  
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190540933   0 - 190850796 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=9842.000000
s hg38.chr4_KI270925v1_alt    306712 4 +    555799 CTTG
s panTro4.chr4             193004987 4 + 193495092 CTTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198086785 4 + 198332218 CTTG
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183684966 4 + 184069350 CTTG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189074356 4 + 189454096 CTTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178497901 4 + 178775436 CTTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135442589 4 + 135778131 CCTG
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17984274 4 -  59632846 CTTG
i canFam3.chr16            C 0 I 104
e mm10.chr8                 87684689 1456 - 129401213 I
e calJac3.chr3             190540933 0 - 190850796 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=108171.000000
s hg38.chr4_KI270925v1_alt    306716 59 +    555799 ACCTTCtctaaagcaaattaaaaatgtagagatgaatctctaaatttaatatttaggaa
s panTro4.chr4             193004991 59 + 193495092 ACCTTCtctaaagcaaattaaaaatgtagagctgaatctctaaatttaatatttaggaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198086789 59 + 198332218 ACCTTCtctaaagcaaattaaaaacgtagagatgaatctctaaattgaatatttaggaa
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183684970 59 + 184069350 AACTTCtctaaagcaaattaaaaatgtagagatgaatctctaaatttaatatttgggaa
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189074360 59 + 189454096 AACTTCtctaaagcaaattaaaaatgtagagatgaatctctaaatttaatatttgggaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178497905 59 + 178775436 AACTTCtctaaagcaaattaaaaatgtagaGATGAATCTCTAAATTTAATATTTGGGAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135442593 59 + 135778131 AACTTCtctaaagcaaattaaaaatgtagagatgaatctctaaatttaatatttgggaa
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87684689 1456 - 129401213 I
e canFam3.chr16             17984278 104 -  59632846 I
e calJac3.chr3             190540933  0 - 190850796 C
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=1274796.000000
s hg38.chr4_KI270925v1_alt    306775 588 +    555799  
s panTro4.chr4             193005050 588 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198086848 586 + 198332218  
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183685029 593 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189074419 593 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178497964 595 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135442652 595 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190540933 602 - 190850796  
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87684689 1456 - 129401213 I
e canFam3.chr16             17984278 104 -  59632846 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=261205.000000
s hg38.chr4_KI270925v1_alt    307363 112 +    555799 TGCTTTCAAA----------------ACAGGAGATCGAGTGATAATCTATCTAATGTTCTAGAAATGTTTGAGGCACCCTAGACAAATGTCAATCTTA--AAGTTTTCCTTTTGCCTTATTTCTCTAAGT
s panTro4.chr4             193005638 112 + 193495092 TGCTTTCAAA----------------ACAAGAGATCAAGTGATAATCTATCTAATGTTCTAGAAATGTTTGAGGCACCCTAGACAAATGTCAATCTTA--AAGTTTTCCTTTTGCCTTATTTCTCTAAGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198087434 112 + 198332218 TGCTTTCAAA----------------AAAGGAGATCAAGTGATAATTTATCTAATGTTCTAGAAATGTTTGAGGCACACTAGACAAATGTCAACCTTA--AAGTTTTCCTTTTGCCTTATTTCTCTAAGT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183685622 113 + 184069350 TGCTTTCAAA---------------CAAAGCAGATCAAGTGATAATCTACCTAATGTTCTAGAAATGTTTGAGGCACCTTAGGCAAATGTCAATCTTA--AAGTTTTCCATTTGCCTTATTTCTCTAAAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189075012 113 + 189454096 TGCTTTCAAA---------------CAAAGCAGATCAAGTGATAATCTACCTAATGTTCTAGAAATGTTTGAGGCACCTTAGGCAAATGTCAATCTTA--AAGTTTTCCATTTGCCTTATTTCTCTAAAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178498559 113 + 178775436 TGCTTTCAAA---------------CAAAGCAGATCAAGTGATAATCTATCTAATGTTCTAGAAATGTTTGAGGCACCTTAGGCAAATGTCAATCTTA--AAGTTTTCCATTTGCCTTATTTCTCTAAAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135443247 109 + 135778131 TGCTTTCAAA---------------CAAAGCAGATCAAGTGAT----TATCTAATGTTCTAGAAATGTTTGAGGCACCTTAGGCAAATGTCAATCTTA--AAGTTTTCCATTTGCCTTATTTCTCTAAAT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190541535 122 - 190850796 CCACTTCAAAGCTGACACTTTGTAACAAAGCAGGCCAAGTGAT----TATCTAATGTTCTAGAAATGTTTGTGGCACCCTGGACAAATGCCAATCTT----AGTTTTCCTTTTGCCTTATTTCTCTAAGG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             17984382 114 -  59632846 TATTTGCAAC----------------AAAGTGGATCAAGAGATAATCCATCTAATTATCTTGAAATGTTTGAGGAATCAGAGAAAATTTTCTATCAAAAGAAATTTCACTTTCACTATATTCATCTAAGT
i canFam3.chr16            I 104 C 0
e mm10.chr8                 87684689 1456 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=54522.000000
s hg38.chr4_KI270925v1_alt    307475 23 +    555799 AACACCTTCTCAAATCATGAAAG--------------
s panTro4.chr4             193005750 23 + 193495092 AACACCTTCTCAAATCATGAAAG--------------
i panTro4.chr4             C 0 I 5522
s ponAbe2.chr4             198087546 23 + 198332218 AACACCTTCTCAAATCATGAAAG--------------
i ponAbe2.chr4             C 0 I 1
s rheMac3.chr5             183685735 23 + 184069350 AACACCTTTTCCAATCATGAAAG--------------
i rheMac3.chr5             C 0 I 1
s macFas5.chr5             189075125 23 + 189454096 AACACCTTTTCCAATCATGAAAG--------------
i macFas5.chr5             C 0 I 1
s papAnu2.chr5             178498672 23 + 178775436 AACACCTTTTCCAATCATGAAAG--------------
i papAnu2.chr5             C 0 I 1
s chlSab2.chr7             135443356 23 + 135778131 AACACCTTTTCCAACCATGAAAG--------------
i chlSab2.chr7             C 0 I 1
s calJac3.chr3             190541657 23 - 190850796 AATGCCTTTTCAAATCATGAAAG--------------
i calJac3.chr3             C 0 I 1
s mm10.chr8                 87686145 23 - 129401213 aatacctaattaaaaaatgtaTA--------------
i mm10.chr8                I 1456 I 3
s canFam3.chr16             17984496 37 -  59632846 ATCATTTTCTAAAATCAAGAAATCAATAAACACTTTG
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=493990.000000
s hg38.chr4_KI270925v1_alt    307498 215 +    555799 AAGAGTGATCT------AAATTTTTTTTTAAAAATCCATATTAGGAGGAA----GATCT----------------------------------ATTAAGGATCTAGT---------GAGTAAATGGC-ACTTTTGGAATGTTTAGAACTTCGAGGGGGAAACCACATGTTTTCACATCCCACTATATCATTTCCATAAGGATGAGGCAAAGCACTACCCCTATTTGCAGAAGAGAGACTGCCGTGAAGTCAGTGGACACTATCTCCAGG
s panTro4.chr4             193011295 215 + 193495092 AAGAGTGATCT------AAAACTTTTTTTAAAAATCCATATTAGAAGGAA----GATCT----------------------------------ATTAAGGATCTAGT---------GAGTAAATGAC-ACTTTTGGAATGTTTAGAACTTCAAGGGGGAAACCACATGTTTTCACATCCCACTATATCATTTCCATAAGGATGAGGAAAAGCACTACCCCTATTTGCAGAAGAGAGACTGCCGTGAAGTCAGTGGACACTATCTCCAGG
i panTro4.chr4             I 5522 C 0
s ponAbe2.chr4             198087570 215 + 198332218 AAGAGTGAACT------AAATTTTTTTTAAAAAATCCATATTAGAAGAAA----GATCT----------------------------------ATTAAGGGTCTAGT---------GAGTAAATGAT-ACTTTTGGAATGTTTAGAACTTTGAGGGGGAAATCACATGTTTTCACATCCCACTATATAATTTCCATAACGATGAGGCAAAGCACTACCCCTATTTGCAGAAGAGAGACTGCCGTGAAGTCAGTGGACACTACCTCTAGG
i ponAbe2.chr4             I 1 C 0
s rheMac3.chr5             183685759 215 + 184069350 AAGAGTGatat-aaaaaaaaaatttt-----aaatCCATATTAGAAGGAA----GATCT----------------------------------ATTAAGGATCTAGT---------GAGTAAACGAC-GCTTTTGGAATGTTTAGAACTTTGAGGGGGCTAGCACATGTCTTCAGATCCCACTATATCATTTCCATAAGGATGAGGCAAAGCACTACTGCTATTTGCAGAAGAGAGACTGCCGTGAAGTCAGTGGACACTACCTCCAGG
i rheMac3.chr5             I 1 C 0
s macFas5.chr5             189075149 216 + 189454096 AAGAGTGATATAAAAAAAAAAATTTT-----AAATCCATATTAGAAGGAA----GATCT----------------------------------ATTAAGGATCTAGT---------GAGTAAACGAC-GCTTTTGGAATGTTTAGAACTTTGAGGGGGCTAGCACATGTCTTCAGATCCCACTATATCATTTCCATAAGGATGAGGCAAAGCACTACTGCTATTTGCAGAAGAGAGACTGCCGTGAAGTCAGTGGACACTACCTCCAGG
i macFas5.chr5             I 1 C 0
s papAnu2.chr5             178498696 215 + 178775436 AAGAgtgatat-aaaaaaaaattttt-----aaatccacATTAGAAGGAA----GATCT----------------------------------ATTAAGGATCTAGT---------GAGTAAACGAC-GCTTTTGGAATGTTTAGAACTTTGAGGGGGCTAGCACATGTCTTCAGATCCCACTGTATCATTTCCATAAGGACGAGGCAAAGCACTACTGCTATTTGCAGAAGAGAGACTGCCGTGAAGTCAGTGGACACTACCTCCAGG
i papAnu2.chr5             I 1 C 0
s chlSab2.chr7             135443380 215 + 135778131 AAGAGTGATAT-AAAAAAAATTTTTT-----TAATCCATATTAGAAGGAA----AATCT----------------------------------ATTAAGGATCTAGT---------GAGTAAATGAC-GCTTTTGGAATGTTTAGAACTTTGAGGGGGGTAGCACACGTCTTCAGATCCCACTATATCATTTCCATAAGGATGAGGCAAAGCACTACCGCTATTTGCAGAAGAGAGACTGCCGTGAAGTCAGTGGACACTACCTCCAGG
i chlSab2.chr7             I 1 C 0
s calJac3.chr3             190541681 203 - 190850796 AAGAGTGATCT-CAAAAACCATTTTT----AAAATCTATATTAGAAGAAA-------------------------------------------------GATCTAGC---------GACTAAATGCT---TTTCAGAATGTTTACAGCTGTGAAGGGAACATCACACGTTTTGAGATCCCACTACATTATTTCCATAAGCCTGAGGCAAAGCACGCCCTCTCTTTGCAAAAGAGAGACTGCTGTGAAGTCAGGGGACACTGCCACCTGG
i calJac3.chr3             I 1 C 0
s mm10.chr8                 87686171 198 - 129401213 AAAAAGGACCT------ATATTCTTTCTAATTAATCTATACTAGAAGTGA-------------------------------------------------GACCTAGT---------GGGTGATTACT-TGCTATGGAATCTCTAG--CTTTGA--GAGACAGCACAGGTTTCCAGGCCCCAACATATCTCTTTGGTAAGGAAGAAACTAAAGACATCCACCATTTGCAGAA-ATAGCATGCAATGATATCAGT-GAGGCTATTCCTAGT
i mm10.chr8                I 3 C 0
s canFam3.chr16             17984533 253 -  59632846 AAATCTGTATT------AGATTCTTT---------CTATATTAGAAAGAACAAAGATCTaaaaaaaaaaaaagaaaagaaaaaagaaagaaCGAACAAAGATCTAATAAGGGCCGAGAATAGATGACTGTTTCTGGAATGTTTAGGACTTTGAGAAAAAAGTCCCAGGTTTTCAGATTCTACTGTATGTTTTCTGTAGGAATGAGGCT-AGCTCATGCTTCATTGGCAGAAGAAGGGCTGTAATTAACTCTGTGGAAATTATCTCCAGG
i canFam3.chr16            C 0 I 384
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=6876.000000
s hg38.chr4_KI270925v1_alt    307713 2 +    555799 TC
s panTro4.chr4             193011510 2 + 193495092 TC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198087785 2 + 198332218 TC
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183685974 2 + 184069350 TC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189075365 2 + 189454096 TC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178498911 2 + 178775436 TC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135443595 2 + 135778131 TC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190541884 2 - 190850796 TC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87686369 2 - 129401213 TC
i mm10.chr8                C 0 C 0
e canFam3.chr16             17984786 384 -  59632846 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=6363278.000000
s hg38.chr4_KI270925v1_alt    307715 2405 +    555799  
s panTro4.chr4             193011512 2409 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198087787 2404 + 198332218  
i ponAbe2.chr4             C 0 I 1
s rheMac3.chr5             183685976 2386 + 184069350  
i rheMac3.chr5             C 0 I 1
s macFas5.chr5             189075367 2388 + 189454096  
i macFas5.chr5             C 0 I 1
s papAnu2.chr5             178498913 2404 + 178775436  
i papAnu2.chr5             C 0 I 1
s chlSab2.chr7             135443597 2310 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190541886 2400 - 190850796  
i calJac3.chr3             C 0 I 1
s mm10.chr8                 87686371 2379 - 129401213  
i mm10.chr8                C 0 I 20787
s canFam3.chr16             17985170 2466 -  59632846  
i canFam3.chr16            I 384 I 15
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=88779.000000
s hg38.chr4_KI270925v1_alt    310120 35 +    555799 CCTCCATCAGCGTGCATTCTCAAGTGACTACCTGG
s panTro4.chr4             193013921 35 + 193495092 CCTCCATCAGCGTGCATTCCCAAGTGACTACCTGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198090192 35 + 198332218 CCTCCATCAGCGTCCATTCCTGAGTGACTACCTGG
i ponAbe2.chr4             I 1 C 0
s rheMac3.chr5             183688363 35 + 184069350 CCTCCATCAACGTGCATTCCTGAGTGACTACCTGG
i rheMac3.chr5             I 1 C 0
s macFas5.chr5             189077756 35 + 189454096 CCTCCATCAACGTGCATTCCTGAGTGACTACCTGG
i macFas5.chr5             I 1 C 0
s papAnu2.chr5             178501318 35 + 178775436 CCTCCATCAACGTGCATTCCTGAGTGACTACCTGG
i papAnu2.chr5             I 1 C 0
s chlSab2.chr7             135445907 33 + 135778131 CCTCCATCA--GCGCATTCCTGAGTGACTACCTGG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190544287 35 - 190850796 CCTCCAATACCACCCATTCCTGAGTCGCTACCTGG
i calJac3.chr3             I 1 I 2155
s canFam3.chr16             17987651 35 -  59632846 cccccatctacctgcattcttgagtgactatatgg
i canFam3.chr16            I 15 I 2002
e mm10.chr8                 87688750 20787 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=6111.000000
s hg38.chr4_KI270925v1_alt    310155 3 +    555799 GTG
s panTro4.chr4             193013956 3 + 193495092 GTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198090227 3 + 198332218 GTG
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183688398 3 + 184069350 GTG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189077791 3 + 189454096 GTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178501353 3 + 178775436 GTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135445940 3 + 135778131 GTG
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87688750 20787 - 129401213 I
e canFam3.chr16             17987686 2002 -  59632846 I
e calJac3.chr3             190544322 2155 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=12831.000000
s hg38.chr4_KI270925v1_alt    310158 5 +    555799 GCCTG
s panTro4.chr4             193013959 5 + 193495092 GCCTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198090230 5 + 198332218 GCCTG
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183688401 5 + 184069350 GCCTG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189077794 5 + 189454096 GCCTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178501356 5 + 178775436 GCCTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135445943 5 + 135778131 GCCTG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190546477 5 - 190850796 GTCTG
i calJac3.chr3             I 2155 C 0
e mm10.chr8                 87688750 20787 - 129401213 I
e canFam3.chr16             17987686 2002 -  59632846 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=115818.000000
s hg38.chr4_KI270925v1_alt    310163 42 +    555799 ACGGGTCTAGAGTCTTTCAAGGGTCTGCTGGCATCTCATCTG
s panTro4.chr4             193013964 42 + 193495092 ACGGGTCTAGAGTCTTTCAAGGCTCTGCTGGCATCTCATCTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198090235 42 + 198332218 ATGGGTCTAGAGTCTTTCAAGGCTCTGCTGGCATCTCATCTG
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183688406 42 + 184069350 ATGGGTCTAGAGTCTTtcaaggctctgctggcatctcatctg
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189077799 42 + 189454096 ATGGGTCTAGAGTCTTtcaaggctctgctggcatctcatctg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178501361 42 + 178775436 ATGGGTCTAGAGTCTTTCAAGGCTCTGCTGGCATCTCATCTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135445948 42 + 135778131 ACGGGTCTGGAGTCTCTCAAGGCTCTGCTGGCATCTCATCTG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190546482 42 - 190850796 ATGGGTCTAGCGTCTTTCACGGCTCTGCTGGCATCTCATCTG
i calJac3.chr3             C 0 I 29542
s canFam3.chr16             17989688 40 -  59632846 atagaccaagggtctttccaggctctatttgta--tcacttg
i canFam3.chr16            I 2002 C 0
e mm10.chr8                 87688750 20787 - 129401213 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=596668.000000
s hg38.chr4_KI270925v1_alt    310205 317 +    555799 CGAACAT-----CCCACTGGCCACAGCAAATCTCATGGtgggatggttaattgtacgtgtcaacttgactgggccacagggtgcccagaaatttgtttcaacattattctgggtctgtctgggagggtgactgcaaatgagattagcatttacattggcagactga-----------------------------gcacagcaggttgtcccctccgccccacctgatgtggctgggcctcagccagtcagctggaggcctgaatggagcaa-------------------gtcagagggaactctttctgcttggactgctgtgaacctgggcattgggttttgtgttttgtgtttctgcctgtggacc
s panTro4.chr4             193014006 317 + 193495092 CGAACAT-----CCCACTGGCCACAGCAAATCTCATGGtgggatggttaattgtatgtgtcaacttgactgggccacagggtgcccagaaatttgtttcaacattattctgggtctgtctgggagggtgattgcaaatgagattagcatttacattggcagactga-----------------------------gcatagcaggttgtcccccccgccccacccgatgtggctgggcctcagccagtcagctggaggcctggatggagcaa-------------------gtcagagggaactctttctgcttggactgctgtgaacccaggcattgggttttgtgttttgtgtttctgcctgtggacc
i panTro4.chr4             C 0 I 4098
s ponAbe2.chr4             198090277 308 + 198332218 CGAACAT-----CCCACTGGCCACAGCAAATCTCATGGtgggatggttaattgtatgtgtcaacttgactgggccacagggtgcccagaaatttgattcaacattattctgggtctgtctgggagggtgattccaaatgagattagcatttacattggcagactga-----------------------------gcacagcaggttgtcccct---------ctgatgtggttgggcctcagccagtcagctggaggcctgaacagaacaa-------------------gtcagagggaactctttctgcttggactgctgtgaaccagggcattgggttttgtgttttgtgtttctgcctgtggacc
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183688448 305 + 184069350 cgaacat-----tccactggcaacagcaaatctcatggtgggatggtgaattgtatgtgtcaacttgactgggccacagggtgcccagaaatttggttcaacattattctgggtctgtct-ggagggtgattccaaatgagattagcatttacgttggcagaccga-----------------------------gcacagcagcttgtccca----------ctgatgtgggtgggcctcagccagtcagctggaggcctgaacagagcaa-------------------gtcagagggaactctttctgctt-gaccgctgtgaaccggggcattgggttttgtgttttgtgtttctgcctgtggacc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189077841 305 + 189454096 tgaacat-----tccactggcaacagcaaatctcatggtgggatggtgaattgtatgtgtcaacttgactgggccacagggtgcccagaaatttggttcaacattattctgggtctgtct-ggagggtgattccaaatgagattagcatttacgttggcagaccga-----------------------------gcacagcagcttgtccca----------ctgatgtgggtgggcctcagccagtcagctggaggcctgaacagagcaa-------------------gtcagagggaactctttctgctt-gaccgctgtgaaccggggcattgggttttgtgttttgtgtttctgcctgtggacc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178501403 304 + 178775436 CGAACAT-----TCCACTGGCAACAGCAAATCTCATGGTGGGATGGTGAATTGTATCTGTCAACTtcactgggccacagggtgcccagaaaTTTGGTTCAACATTATTCTGGGTCTGTCT-GGAGGGTGATTCCAAATGAGATTAGCATTTACGTTGGCAGACCGA-----------------------------GCACAGCAGC-TGTCCCA----------CTGATGTGGATGGGCCTCAGCCAATCAGCTGGAGGCCTGAACAGAGCAA-------------------GTCAGAGGGAACTCTTTCTGCTT-GACCGCTGTGAACCGGGGCAttgggttttgtgttttgtgtttctgCCTATGGACC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135445990 300 + 135778131 CGAACAT-----CCCACTGGCAACAGCAAATCTCATGGtgggatggttaattgtatgtgtcaacttgactgggacacagggtgcccagaaatttggttcaacattattctgggtctgtct-ggagggtgactccaaatgagattagcatttacgttggcagactga-----------------------------gcacagcagcttgtccca----------ctgatgtgggtgggcctcagccaatcagctggaggcctgaacacagcaa-------------------gtcaggggga-----ctctgctt-gactgctgtgaaccggggcattgggttttgtgttttgtgtttctgcctgtggacc
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17989728 342 -  59632846 ctaatatatttgaccattggtcaaagcaaatcacatggtatgatggttaattttaagtgtcaacttgactaggccaca-agtgcccagatatttagccaaaatttattcttaatatgtctgtgaggat-attctggatgagattcacatttaaattggtagactgaaaaaaaataaaaaaataaactggtagactgaaaaggagatgaccttcc---------ctaatatgagtggatctcacccaaacagttgaaggcctgggtagaagaaaaaggctgacccatccatgaataagggaaacttctcctgcct--------ttgagctggggtatcaggtttt-tgtttt-tgtttctgttt-------
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87688750 20787 - 129401213 I
e calJac3.chr3             190546524 29542 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=183521.000000
s hg38.chr4_KI270925v1_alt    310522 110 +    555799 tgaactgaaacatcagattttcccttggaagcccaccagcatttggactagaattagcccatcagctttcctaggtctgcagtttgcaaatgcatatctatcttgagact
s panTro4.chr4             193018421 110 + 193495092 tgaactgaaacatcagattttcccttggaagcccaccagcatttggactagaattagcccatcagctttcctaggtctgcagtttgcaaatgcatatctatcttgagact
i panTro4.chr4             I 4098 C 0
s ponAbe2.chr4             198090585 106 + 198332218 tgaactgaaacatcagattttcccttggaagcccatcagcatttggactagaattagcccaccagctttcctaggtctgcagtttgcaaatgca----tatcttgagact
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183688753 106 + 184069350 tgaacggaaacatcagaatttctcttggaagcccactagcatttggactagaattagtccatcagttttcctaggtctgcagtttgcaaatgca----tatcatgagact
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189078146 106 + 189454096 tgaacggaaacatcagaatttctcttggaagcccactagcatttggactagaattagtccatcagttttcctaggtctgcagtttgcaaatgca----tatcatgagact
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178501707 106 + 178775436 TGAACGGAAACATCAGAATTTTTCTTGGAAGCCCACTAGCATTTGGACTAGAATTAGTCCATCAGTTTTCCTAGGTCTGCAGTTTGCAAATGCG----TATCATGAGACT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135446290 106 + 135778131 tgaacggaaacatcagaatttctcttggaatcccactagcatttggactagaattagtccatcagctttcctacgtctgcagtttgcaaatgca----tatcatgagact
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17990070  72 -  59632846 ------------------tctactttccaaacccaaaa-----tgaaattgaact-----------cttcctgggtctcaaacctactggtatt----cagattggaact
i canFam3.chr16            C 0 I 145
e mm10.chr8                 87688750 20787 - 129401213 I
e calJac3.chr3             190546524 29542 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=203545.000000
s hg38.chr4_KI270925v1_alt    310632 121 +    555799 tctgttttcataatcacgtgagccaatttcatatggtatatatttataaaatagtattataggccgggtgcagtggctcacacctgtaatcccagcattttgggagaccaaggcaggcaga
s panTro4.chr4             193018531 121 + 193495092 tctgttttcataatcacgtgagccaatttcatatggtatatatttataaaattgtattataggccgggtgcagtagctcacacctgtaatcccagcattttgggagaccaaggtgggcaga
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198090691 121 + 198332218 tctgttttcataatcatgtgagccaatttcTTATGGtatatatttataaaataaaattatGggctgggcacagtggctcagacctgtaatcccagcattttggaaggccgagatgggcaga
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183688859 121 + 184069350 tctgttttcataatcacgtgagccaatttcttatagtatatATTTATAAAATAATATTATGggccatgcgcagtggcttacacctgtagtcccagcactttgggaggccgaggctggcaga
i rheMac3.chr5             C 0 M 244
s macFas5.chr5             189078252 121 + 189454096 tctgttttcataatcacgtgagccaatttcttatagtacatatttataaaataatattatgggccatgcgcagtggcttacacctgtagtcccagcactttgggaggccgaggctggcaga
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178501813 121 + 178775436 TCTGTtttcataatcatgtgagccaatttcttatagtatatatttataaaataatattacgGGCCatgcgcagtggcttacacctgtagtcccagcactttgggaggccgaggctggcaga
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135446396 121 + 135778131 tttgttttcatgatcacataagccaatttcttatggtatatatttataaaataatattatgggccgtgcgcagtggctcacacctatagtcccagcactttgggaggccaaggctggcaga
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87688750 20787 - 129401213 I
e canFam3.chr16             17990142 145 -  59632846 I
e calJac3.chr3             190546524 29542 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=161521.000000
s hg38.chr4_KI270925v1_alt    310753 136 +    555799 ttacaaggtcaggagattgagaccatcctggcaaacatggtgaaaccccgtctgtactaaaaatacaaa--aattaacggggcatggtggcgggcgcctgtagtcgcagctactcgggaggctgaggcaggagaatca
s panTro4.chr4             193018652 136 + 193495092 ttacaaggtcaggagatcgagaccatcctggcaaacatggtgaaaccccgtctgtactaaaaatacaaa--aattaacggggcatggtggcgggcacctgtagtcgcagctactcgggaggctgaggcaggagaatca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198090812 135 + 198332218 ttacaaggtcaagagattgagaccatcctggcaaacatggtgaaa-cctgtctctactaaaaatacaaa--aattagctgggcatggtggcgggtgcctgtaatcccagctactcgggaggctgaggcaggagaatta
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189078373 138 + 189454096 ttacaaggacaagaaattgagaccatcctggccaacatggtgaaaccccatctccactaaaaatataaaaaaattagctgggcatggtggcatgcacctgtagtcacagctacttgggaggctgaggcaggataattg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178501934 138 + 178775436 ttacAAGgacaagaaattgagaccatcctggccaacatggtgaaaccccatctccactaaaaatataaaaaaattagctgggcatggtggcatgcacctgtagtcacagctacttgggaggctgaggcaggagaattg
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135446517 138 + 135778131 ttacaaggacaagagattgagaccatcctggccaacatggtgaaaccccatctccactaaaaatacaaaacaattagctgggcatggtggcatgcacctgtagtcacagctacttgggaggctgaggcaggagaattg
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87688750 20787 - 129401213 I
e canFam3.chr16             17990142 145 -  59632846 I
e calJac3.chr3             190546524 29542 - 190850796 I
e rheMac3.chr5             183688980 244 + 184069350 M
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=164266.000000
s hg38.chr4_KI270925v1_alt    310889 105 +    555799 cttgaacccggcaggcggaggttgccgtgaacagagatcatgccactgcatgccagcctggcgacagagcaagactctgtctcaaa-aaataaacaaataaataaa
s panTro4.chr4             193018788 101 + 193495092 cttgaacccggcaggcggaggttgctgtgaacagagatcatgccactgcatgccagactggcgacagagcaagactctgtctcaaa-aaataaa----taaataaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198090947 106 + 198332218 cttgaatccgggaggcggaggttgcagtgagcagagatcacgccactgcactccagcctggcaacagagaaagactctgtctcaaataaataaataaataaataaa
i ponAbe2.chr4             C 0 I 529
s rheMac3.chr5             183689232 102 + 184069350 cttgaacccaggaggcagaggttgcagtgagccgagatcgcgccactgcactccagcctggtgacagagcaagactctgtctcaaagaaataaa----gaaataaa
i rheMac3.chr5             M 244 C 0
s macFas5.chr5             189078511 102 + 189454096 cttgaacccaggaggcagaggttgcagtgagccgagatcgcgccactgcactccagcctggtgacagagcaagactctgtctcaaagaaataaa----gaaataaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178502072 102 + 178775436 cttgaacccaggaggcggaggttgcagtgagccgagaccgcgccactgcactccagcctggtgacagagcaagactctgtctcaaagaaataaa----gaaataaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135446655 102 + 135778131 cttgaacccaggagggagaggttgcagtgagccgagatcgtgccactgcactccagcctggtgacagagcaagactctgtctcaaagaaagaaa----gaaataaa
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87688750 20787 - 129401213 I
e canFam3.chr16             17990142 145 -  59632846 I
e calJac3.chr3             190546524 29542 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=67318.000000
s hg38.chr4_KI270925v1_alt    310994 53 +    555799 aataatattatgaacaatattattt--tatatatatacacacctatcctattgtt
s panTro4.chr4             193018889 53 + 193495092 aataatattatgaacaatattattt--tatatgtatacacacctatcctattgtt
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183689334 53 + 184069350 aaTAATATTATGAACAACATTAttt--tatatatatacacacgtatcctattgtt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189078613 53 + 189454096 aataatattatgaacaacattattt--tatatatatacacacgtatcctattgtt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178502174 55 + 178775436 aataatattatgaacaacgttattttatatatatatacacacgtatccTATTGTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135446757 53 + 135778131 aataatattatgaacaacattattt--tatatatatacacacgtatcctattgtt
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87688750 20787 - 129401213 I
e canFam3.chr16             17990142 145 -  59632846 I
e calJac3.chr3             190546524 29542 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198091053 529 + 198332218 I

a score=148790.000000
s hg38.chr4_KI270925v1_alt    311047 93 +    555799 tctgtttttctggagaacctagactaattcaCAGGGCTAAGCCCAAAGTCAAACTTGGTGACCTCTATAAAATTACATGGCAAAGGCT---GGAGA
s panTro4.chr4             193018942 93 + 193495092 tctgtttttctggagaacctagactaatTCGCAGGGCTAAGCCCAATGTCAAACTTGGTGACCTCTATAAAATTACATGGCAAAGGCT---GGAGA
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183689387 93 + 184069350 tctattcttctggagaaccttgactaattcaCAGCGCTAAGCCCAGTGTCAAACTGGGAGACCTctgtaaaactacatggcaaaggct---ggaga
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189078666 93 + 189454096 tctattcttctggagaaccttgactaattcacagcgctaagcccagtgtcaaactgggagacctctgtaaaactacatggcaaaggct---ggaga
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178502229 93 + 178775436 TCTATTcttctggagaaccttgactaattcACAGGGCTAAGCCCAGTGTCAAACTGGGAGACCTCTGTAAAACTACATGGCAAAggct---ggaga
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135446810 96 + 135778131 tctgtttttctggagaaccttgactaattcaCAGGGCTAAGCCCAGTGTCAAACTGGGAGACCTCTGTAAAACTACATGGCAAAGGCTGGAGGAGA
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17990287 93 -  59632846 tctgtttctCTGAAGAATCTTAACACATATACATGACTAAGCCTAAAGTCAAACTGGGAGAGCTTTATAAAATTACATGGCAAAGGCT---ATAGA
i canFam3.chr16            I 145 I 231
e mm10.chr8                 87688750 20787 - 129401213 I
e calJac3.chr3             190546524 29542 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198091053 529 + 198332218 I

a score=1570873.000000
s hg38.chr4_KI270925v1_alt    311140 1088 +    555799  
s panTro4.chr4             193019035 1085 + 193495092  
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183689480 1065 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189078759 1070 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178502322 1073 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135446906 1088 + 135778131  
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17990611 1058 -  59632846  
i canFam3.chr16            I 231 C 0
e mm10.chr8                 87688750 20787 - 129401213 I
e calJac3.chr3             190546524 29542 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I
e ponAbe2.chr4             198091053  529 + 198332218 I

a score=71966.000000
s hg38.chr4_KI270925v1_alt    312228 34 +    555799 GGAGTTATT-------GAGATAAATAGA---AGAAACAGTGTTC
s panTro4.chr4             193020120 34 + 193495092 ggacttatt-------gagataaataga---agaaacagtgttc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198091582 34 + 198332218 GGAGTTATT-------AAGATAAATAGA---AGAAACAGTGTTC
i ponAbe2.chr4             I 529 C 0
s rheMac3.chr5             183690545 34 + 184069350 ggggttatt-------gagataaataga---agaaacagtgttc
i rheMac3.chr5             C 0 I 27496
s macFas5.chr5             189079829 34 + 189454096 ggggttatt-------gagataaataga---agaaacagtgttc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178503395 34 + 178775436 GGGGTTATT-------GAGATAAATAGA---AGAAACAGTGTTC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135447994 34 + 135778131 ggggttatt-------gagataaataga---agaaacagtgttc
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17991669 44 -  59632846 ggagttattataagaagttataaaaagacggaggaacagtgttc
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87688750 20787 - 129401213 I
e calJac3.chr3             190546524 29542 - 190850796 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=7261.000000
s hg38.chr4_KI270925v1_alt    312262 6 +    555799 CAGGTT
s panTro4.chr4             193020154 6 + 193495092 caggtt
i panTro4.chr4             C 0 I 23869
s ponAbe2.chr4             198091616 6 + 198332218 CAGGTT
i ponAbe2.chr4             C 0 I 18018
s macFas5.chr5             189079863 6 + 189454096 tgggtt
i macFas5.chr5             C 0 I 30648
s papAnu2.chr5             178503429 6 + 178775436 TGGGTT
i papAnu2.chr5             C 0 I 25755
s chlSab2.chr7             135448028 6 + 135778131 cgggtt
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             17991713 6 -  59632846 caggca
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87688750 20787 - 129401213 I
e calJac3.chr3             190546524 29542 - 190850796 I
e rheMac3.chr5             183690579 27496 + 184069350 I
e nomLeu3.chr7b            113803310 10691 + 115148730 I

a score=845.000000
s hg38.chr4_KI270925v1_alt            312268 1 +    555799 G
s panTro4.chr4_AACZ03155287_random      9388 1 -     33815 g
i panTro4.chr4_AACZ03155287_random n 23869 C 0
s ponAbe2.chr4                     198109640 1 + 198332218 g
i ponAbe2.chr4                     I 18018 C 0
s nomLeu3.chr7b                      1334726 1 - 115148730 g
i nomLeu3.chr7b                    n 10691 C 0
s chlSab2.chr7                     135448034 1 + 135778131 g
i chlSab2.chr7                     C 0 I 21836
s canFam3.chr16                     17991719 1 -  59632846 a
i canFam3.chr16                    C 0 C 0
e mm10.chr8                         87688750 20787 - 129401213 I
e calJac3.chr3                     190546524 29542 - 190850796 I
e papAnu2.chr5                     178503435 25755 + 178775436 I
e macFas5.chr5                     189079869 30648 + 189454096 I
e rheMac3.chr5                     183690579 27496 + 184069350 I

a score=4916.000000
s hg38.chr4_KI270925v1_alt            312269 7 +    555799 agcccag
s panTro4.chr4_AACZ03155287_random      9389 7 -     33815 agcccag
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198109641 7 + 198332218 agcccag
i ponAbe2.chr4                     C 0 C 0
s nomLeu3.chr7b                      1334727 7 - 115148730 agcccag
i nomLeu3.chr7b                    C 0 C 0
s canFam3.chr16                     17991720 7 -  59632846 tgtctag
i canFam3.chr16                    C 0 I 21658
e mm10.chr8                         87688750 20787 - 129401213 I
e calJac3.chr3                     190546524 29542 - 190850796 I
e chlSab2.chr7                     135448035 21836 + 135778131 I
e papAnu2.chr5                     178503435 25755 + 178775436 I
e macFas5.chr5                     189079869 30648 + 189454096 I
e rheMac3.chr5                     183690579 27496 + 184069350 I

a score=290672.000000
s hg38.chr4_KI270925v1_alt            312276 630 +    555799  
s panTro4.chr4_AACZ03155287_random      9396 631 -     33815  
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198109648 654 + 198332218  
i ponAbe2.chr4                     C 0 C 0
s nomLeu3.chr7b                      1334734 621 - 115148730  
i nomLeu3.chr7b                    C 0 C 0
e mm10.chr8                         87688750 20787 - 129401213 I
e canFam3.chr16                     17991727 21658 -  59632846 I
e calJac3.chr3                     190546524 29542 - 190850796 I
e chlSab2.chr7                     135448035 21836 + 135778131 I
e papAnu2.chr5                     178503435 25755 + 178775436 I
e macFas5.chr5                     189079869 30648 + 189454096 I
e rheMac3.chr5                     183690579 27496 + 184069350 I

a score=-501.000000
s hg38.chr4_KI270925v1_alt            312906 6 +    555799 -ctcA--TG
s panTro4.chr4_AACZ03155287_random     10027 8 -     33815 -ctctcTTC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198110302 8 + 198332218 -ctctcaTC
i ponAbe2.chr4                     C 0 C 0
s nomLeu3.chr7b                      1335355 8 - 115148730 -ctctcaTC
i nomLeu3.chr7b                    C 0 C 0
s canFam3.chr16                     41619453 6 +  59632846 ccTAT---C
i canFam3.chr16                    n 21658 C 0
e mm10.chr8                         87688750 20787 - 129401213 I
e calJac3.chr3                     190546524 29542 - 190850796 I
e chlSab2.chr7                     135448035 21836 + 135778131 I
e papAnu2.chr5                     178503435 25755 + 178775436 I
e macFas5.chr5                     189079869 30648 + 189454096 I
e rheMac3.chr5                     183690579 27496 + 184069350 I

a score=3641.000000
s hg38.chr4_KI270925v1_alt            312912 2 +    555799 TT
s panTro4.chr4_AACZ03155287_random     10035 2 -     33815 TT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198110310 2 + 198332218 TT
i ponAbe2.chr4                     C 0 C 0
s nomLeu3.chr7b                      1335363 2 - 115148730 TT
i nomLeu3.chr7b                    C 0 C 0
s macFas5.chr5                        343577 2 - 189454096 TT
i macFas5.chr5                     n 30648 C 0
s papAnu2.chr5                        246244 2 - 178775436 TT
i papAnu2.chr5                     n 25755 C 0
s mm10.chr8                         41691678 2 + 129401213 CT
i mm10.chr8                        n 20787 C 0
s canFam3.chr16                     41619459 2 +  59632846 CT
i canFam3.chr16                    C 0 C 0
e calJac3.chr3                     190546524 29542 - 190850796 I
e chlSab2.chr7                     135448035 21836 + 135778131 I
e rheMac3.chr5                     183690579 27496 + 184069350 I

a score=6501.000000
s hg38.chr4_KI270925v1_alt            312914 4 +    555799 TAAC
s panTro4.chr4_AACZ03155287_random     10037 4 -     33815 TAAT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198110312 4 + 198332218 TAAT
i ponAbe2.chr4                     C 0 C 0
s nomLeu3.chr7b                      1335365 4 - 115148730 TAAT
i nomLeu3.chr7b                    C 0 C 0
s macFas5.chr5                        343579 4 - 189454096 GAAT
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                        246246 4 - 178775436 GAAT
i papAnu2.chr5                     C 0 C 0
s calJac3.chr3                        274729 4 + 190850796 taAA
i calJac3.chr3                     T 93246 C 0
s mm10.chr8                         41691680 4 + 129401213 GAAT
i mm10.chr8                        C 0 C 0
s canFam3.chr16                     41619461 4 +  59632846 GAAT
i canFam3.chr16                    C 0 C 0
e chlSab2.chr7                     135448035 21836 + 135778131 I
e rheMac3.chr5                     183690579 27496 + 184069350 I

a score=875251.000000
s hg38.chr4_KI270925v1_alt            312918 229 +    555799 ACAAATTTTCCTATATGCTCTAAGGCTACAATTTTGTCTGTTACTCTGGTAATAATACACTTTCAGGCAGTAACTTGAAATAAAATTCAATTTTCATAAAATCTCCGGAAAACTGGAGAA-AGAGGGAATTTTATTTCAGTATTGTTGTCCTGTGGATTGGAATATGTTCTAACTCACATCATAATTCTTGAAACATTATAAAAT---ATAAAAGCTTAAACTAATATGTTTA
s panTro4.chr4_AACZ03155287_random     10041 229 -     33815 ACAAATTTTGCTATATGCTCTAAGGCTACAATTTTGTCTGTTACTCTGGTAATAATACACTTTCGGGCAGTAACTTGAAATAAAATTCAATTTTCATAAAATCTCTGGAAAACTGGAGAA-AGAGAGAATTTTATTTCAGTATTGTTGTCCTGTGGATTGGAATATGTTCTAACTCACATCATAATTCTTGAAACATTATAAAAT---ACAAAAGCTTAAACTAATATGTCTA
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198110316 222 + 198332218 ACAAATTTTGCTATATGCTCTAAGGCTACAATTTTGTCTGTTACTCTGGTAATAATATACTTTCAGGCAGTAACTTGAAATAAAATTCAATTTTCATAAAATCTCCGGAAAACTGG-----AGAGAGAATTTTATTTCAGTA---TTGTCCTGTGGATTGGAATATGTTCTAACTCACATCATAATTCTTGAAACATTATAAAAT---ATAAAAGCTTAAACTGATATGTTTA
i ponAbe2.chr4                     C 0 C 0
s nomLeu3.chr7b                      1335369 227 - 115148730 ACAAATTTTGCTATATGCTCTAAGGCTACAGTTTTGTCCATTACTCTGGTAATAATATACTTTCAGGCAGTAACTTGAAATAAAATTCAATTTTCATAAAATCTCTGGAAAACTGGAG---AAAGAGAATTTTATTTCAGTATTGTTGTCCTGTGGATTGGAATATGTTCTAGCTCACATCATAATTCTTGAAACATTATAAAAT---ATAAAAGCTTAAACTAATATGTTTA
i nomLeu3.chr7b                    C 0 C 0
s rheMac3.chr5                        351286 230 - 184069350 ACAAACTTTGCTGTATGCTCTAAGGTTACAATTTTGTCTGTTACTCTGGTAATAATATACTTTCCAGCAGTAACTTGGAATAAAATTCAATTTTCATAAAATCTCCAGAAAACTGGAGAAGGAGGAGAGTTTTATTTCAGTATTGTTGTCCTGTGGATTGGAAAACGTTCTAGCTCACATCATAATTCTTGAAACATTATAAAAT---ATAAAAGCTTAAGTTAATATGCTTA
i rheMac3.chr5                     n 27496 C 0
s macFas5.chr5                        343583 230 - 189454096 ACAAACTTTGCTGTATGCTCTAAGGTTACAATTTTGTCTGTTACTCTGGTAATAATATACTTTCCAGCAGTAACTTGGAATAAAATTCAATTTTCATAAAATCTCCAGAAAACTGGAGAAGGAGGAGAGTTTTATTTCAGTATTGTTGTCCTGTGGATTGGAAAACGTTCTAGCTCACATCATAATTCTTGAAACATTATAAAAT---ATAAAAGCTTAAGTTAATATGCTTA
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                        246250 230 - 178775436 ACAAACTTTGCTGTATGCTCTAAGGTTACAATTTTGTCTGTTACTCTGGTAATAATATACTTCCCAGCAGTAACTTGgaataaaattcaattttcatAGAATCTCCAGAAAACTGGAGAAGGAGGAGAGTTTTATTTCAGTATTGTTGTCCTGTGGATTGGAAAACGTTCTAGCTCACATCATAATTCttgaaacattataaaat---ataaaagcttaaGTTAATATGCTTA
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        308264 227 - 135778131 ACAAACTTTGCTGTATGCTCTAAGGTTACAATTTTGTCTGTTACTTTGG---TAATATACTTTCCAGCAGTAACTTGGAATAAAATTCAATTTTCATAAAATCTCCGGAAAACTGGAGAAGGAGGAGAGTTTTATTTCAGTATTGTTGTCCTGTGGATTGGAAAACGTTTTAGCTCACATCATAATTCTTGAAAAATTATAAAAT---ATAAAAGCCTAAGTTAATATGCTTA
i chlSab2.chr7                     n 21836 C 0
s calJac3.chr3                        274733 229 + 190850796 ACAAACTTTGCCGTGTGCTCTCAGGCTACAGTTTAGTCTGTTACTCTGCTAATAATATCCTTTCAGGCAGTAACTTGGAATAAAATTCGATTTTCAAAAAATCTCCAGAAAACTGGAGAA-GGAGAGAATTTTATTTCAGTATTGTTGTCCTGTGGATTGGAATACGTTGTAGGTCACGTCATAATTCCTGAAACATTATAAAAT---ATAAAAGCCTAAAGTAATATGCTTA
i calJac3.chr3                     C 0 T 3019
s mm10.chr8                         41691684 223 + 129401213 ACAAAATTTGCTATATGCTCTATAGCTGTGATTCAGTTTATTACTCTGGGAATAGCATATTTTCAGGTAAAAACTTGGAATGGAAGGCAATTTATAGAAGATCT-TGTATAACTATAAAA-GGAGAGAATTTTATTTCAGCATTACCATGCTGCAGATTGGAATATGTCCTAGGCCATCCCACAATTCCTAAAGCATCATAAAAT--------AATTGAAAGAAATATGATTA
i mm10.chr8                        C 0 C 0
s canFam3.chr16                     41619465 232 +  59632846 ATAAAGTTTGTTTTATGCTCTAAGGCCATAATTTAGTTTAATACTCTGGAAGTAACATACTTTCAGGCAGTAACTTAGAATAACATTCAATTTTTATAGAATCTGCAGGTAACTGGAGAA-AAAGAGAATTTTATTTTAGCATTGTTGTCCTGAAGATTGGAATATGTCTCAGGTTACATCATAATTCTTAAAGCATTGTAAAATATGATAAGAGCCTAATTTAATAGGGTTA
i canFam3.chr16                    C 0 C 0

a score=48405.000000
s hg38.chr4_KI270925v1_alt            313147 16 +    555799 ATTGACTCCAAGAGCA
s panTro4.chr4_AACZ03155287_random     10270 16 -     33815 ATTGACTCCAAGAGCA
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198110538 16 + 198332218 ACTGACTCCAAGAGCA
i ponAbe2.chr4                     C 0 C 0
s nomLeu3.chr7b                      1335596 16 - 115148730 ACTGACTCCAAGAGCA
i nomLeu3.chr7b                    C 0 C 0
s rheMac3.chr5                        351516 16 - 184069350 ACTGACTCCAGGAGCA
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                        343813 16 - 189454096 ACTGACTCCAGGAGCA
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                        246480 16 - 178775436 ACTGACTCCAGGAGCA
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        308491 16 - 135778131 ACTGACTCCAGGAGCA
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        271943 16 + 190850796 GCTGACTCCAGGAGCA
i calJac3.chr3                     T 3019 C 0
s mm10.chr8                         41691907  9 + 129401213 ------GCCAATAAC-
i mm10.chr8                        C 0 C 0
s canFam3.chr16                     41619697 10 +  59632846 ------GCCAATAACA
i canFam3.chr16                    C 0 T 4312

a score=131382.000000
s hg38.chr4_KI270925v1_alt            313163 34 +    555799 TTAATGAAAAGTATATAAATAGGAATACAGATGT
s panTro4.chr4_AACZ03155287_random     10286 34 -     33815 TTAATGAAAAGTATATAAATAGGAATACAGATGT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198110554 34 + 198332218 TTAATGAAAAGTATATAAATATGAATACAGATGT
i ponAbe2.chr4                     C 0 C 0
s nomLeu3.chr7b                      1335612 34 - 115148730 TTAATGAAAAGTATATAACTATGAATACAGATGT
i nomLeu3.chr7b                    C 0 C 0
s rheMac3.chr5                        351532 34 - 184069350 TTAATGAAAAGTGTATAAATATGAATACAGGTAT
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                        343829 34 - 189454096 TTAATGAAAAGTATATAAATATGAATACAGGTAT
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                        246496 34 - 178775436 TTAATGAAAAGTGTATAAATATGAATACAGGTAT
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        308507 34 - 135778131 TTAATGAAAAGTGTATAAATATGAATACAGGTGT
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        271959 34 + 190850796 TTAATGAAAAGTATATAAATATGAATACAGGTGT
i calJac3.chr3                     C 0 C 0
s mm10.chr8                         41691916 32 + 129401213 --AAAGACACGGGCCTGTCTCAGAATGCAGATAT
i mm10.chr8                        C 0 T 4434
s canFam3.chr16                     41615395 34 +  59632846 TTAATGAAAAGTATCTAAATATGAATACAGGTGT
i canFam3.chr16                    T 4312 C 0

a score=40535.000000
s hg38.chr4_KI270925v1_alt            313197 8 +    555799 AGTAATAA
s panTro4.chr4_AACZ03155287_random     10320 8 -     33815 AGTAATAA
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198110588 8 + 198332218 AGTAATAA
i ponAbe2.chr4                     C 0 C 0
s nomLeu3.chr7b                      1335646 8 - 115148730 AGTAATAA
i nomLeu3.chr7b                    C 0 C 0
s rheMac3.chr5                        351566 8 - 184069350 AGTAATAA
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                        343863 8 - 189454096 AGTAATAA
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                        246530 8 - 178775436 AGTAATAA
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        308541 8 - 135778131 AGTAATAA
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        271993 8 + 190850796 AGTAATAA
i calJac3.chr3                     C 0 C 0
s mm10.chr8                         41687514 8 + 129401213 AGTAATAA
i mm10.chr8                        T 4434 C 0
s canFam3.chr16                     41615429 8 +  59632846 AGTAATAA
i canFam3.chr16                    C 0 I 4270

a score=214075.000000
s hg38.chr4_KI270925v1_alt            313205 62 +    555799 AAGAGAATTATCAGTCACCCTTAATTTAATTGGTGTCACCTTAGCTTTTAGAAGGGTAATAG
s panTro4.chr4_AACZ03155287_random     10328 62 -     33815 AAGGGAATTATCAGTCACCCTTAATTTAATTGGTGTCACCTTAGCTTTTAGAAGGGTAATAG
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198110596 62 + 198332218 AAGAGAATTATCAGTCACCCTTAATTTAATTGGTGTCACCTTAGCTTTTAGAAGGGTAATAG
i ponAbe2.chr4                     C 0 C 0
s nomLeu3.chr7b                      1335654 62 - 115148730 AAGAGAATTATCAGTCACCCTTAATTTGATTGCTGTCACCTTAGCTTTTAGAAGGGTAATAG
i nomLeu3.chr7b                    C 0 C 0
s rheMac3.chr5                        351574 60 - 184069350 AA--GAATTATCAGTCACCCTTAATTTAATTGATGTCACCTTAGCTTTTAGAAGGGTAATAG
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                        343871 60 - 189454096 AA--GAATTATCAGTCACCCTTAATTTAATTGATGTCACCTTAGCTTTTAGAAGGGTAATAG
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                        246538 60 - 178775436 AA--GAATTATCAGTCACCCTTAATTTAATTGACGTCACCTTAGCTTTTAGAAGGGTAATAG
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        308549 60 - 135778131 AA--GAATTATCAGTCACCCTTAATTTAATTGATGTCACTTTAGCTTTTAGAAGGGTAATAG
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        272001 62 + 190850796 AAGAGAATTATCAGTCACCCTTAATTTAATTGGTGTCACCTTAGCTTTTAGAAGGGTAAAAG
i calJac3.chr3                     C 0 I 2906
s mm10.chr8                         41687522 61 + 129401213 GGAAGAATTATCAGTCACCC-TAATTTAATTAGTGTCACCTTAGCTTTTAGTAGGGTAATAG
i mm10.chr8                        C 0 C 0
s canFam3.chr16                     41619707 26 +  59632846 ----------------------AAGACAA-TGGTCCTATCTCAG-------------AATAG
i canFam3.chr16                    I 4270 C 0

a score=23090.000000
s hg38.chr4_KI270925v1_alt            313267 10 +    555799 GTAAAGACTG
s panTro4.chr4_AACZ03155287_random     10390 10 -     33815 GTAAAGACTG
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198110658 10 + 198332218 GTAACGACTT
i ponAbe2.chr4                     C 0 C 0
s nomLeu3.chr7b                      1335716 10 - 115148730 GTAAAGACTG
i nomLeu3.chr7b                    C 0 C 0
s rheMac3.chr5                        351634 10 - 184069350 GTAAAGACTG
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                        343931 10 - 189454096 GTAAAGACTG
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                        246598 10 - 178775436 GTAAAGACTG
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        308609 10 - 135778131 GTAAAGACTG
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        274969 10 + 190850796 GCAAAGACAG
i calJac3.chr3                     I 2906 C 0
s mm10.chr8                         41687583 10 + 129401213 GATGGGATTG
i mm10.chr8                        C 0 I 4412
s canFam3.chr16                     41619733  1 +  59632846 -----G----
i canFam3.chr16                    C 0 C 0

a score=170648.000000
s hg38.chr4_KI270925v1_alt            313277 62 +    555799 TTGTGCTCAGAACACCAGAAATCTAT---TCGAACTAGGTGAAAATTTACTAGTG----------------AAGGTATTTG
s panTro4.chr4_AACZ03155287_random     10400 62 -     33815 TTGTGCTCAGAACACCAGAAATCTAT---TCAAACTAGGTGAAAATTTGCTAGTG----------------AAGGTATTTG
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198110668 62 + 198332218 TTGTGCTCAGAACACCAGAAATCTAT---TCGAACTAGGTGAAAATTTGCTAGTG----------------AAGGTATTTG
i ponAbe2.chr4                     C 0 C 0
s nomLeu3.chr7b                      1335726 62 - 115148730 TTGTGCTCAGAACACCAGAAATCTAT---TAGAACGAGGTGAAAATTTGCTAGTG----------------AAGGTATTTG
i nomLeu3.chr7b                    C 0 C 0
s rheMac3.chr5                        351644 62 - 184069350 TTATGCTCAGAACACCGGAACTCTAT---TAGAACTAGGTGAAAATTTGATAGTG----------------AACGTATTTA
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                        343941 62 - 189454096 TTATGCTCTGAACACCGGAACTCTAT---TAGAACTAGGTGAAAATTTGATAGTG----------------AACGTATTTA
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                        246608 62 - 178775436 TCATGCTCAGAACACCGGAACTCTAT---TAGAACTAGGTGAAAATTTGATAGTG----------------AACGtattta
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        308619 62 - 135778131 TTATGCTCAGAACACCGGAACTCTAT---TAGAACTAGGTGAAAATTTGATAGTG----------------AACGTATTTA
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        274979 62 + 190850796 CTGTGCGTAGAACACCACAAATCTAT---TAGAACTAGGTGAAAATTTGCTAGTG----------------AAGGTACTTG
i calJac3.chr3                     C 0 C 0
s canFam3.chr16                     41619734 67 +  59632846 --------------CCAGCTATCTATTTCTAGAACCAAGGGGAGTTGTGTAAGCATTTCTGCATATGAGCCAAGATACCTA
i canFam3.chr16                    C 0 C 0
e mm10.chr8                         41687593 4412 + 129401213 I

a score=3646937.000000
s hg38.chr4_KI270925v1_alt            313339 974 +    555799  
s panTro4.chr4_AACZ03155287_random     10462 973 -     33815  
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198110730 974 + 198332218  
i ponAbe2.chr4                     C 0 C 0
s nomLeu3.chr7b                      1335788 971 - 115148730  
i nomLeu3.chr7b                    C 0 C 0
s rheMac3.chr5                        351706 974 - 184069350  
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                        344003 974 - 189454096  
i macFas5.chr5                     C 0 I 209
s papAnu2.chr5                        246670 970 - 178775436  
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        308681 972 - 135778131  
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        275041 969 + 190850796  
i calJac3.chr3                     C 0 C 0
s mm10.chr8                         41692005 918 + 129401213  
i mm10.chr8                        I 4412 C 0
s canFam3.chr16                     41619801 959 +  59632846  
i canFam3.chr16                    C 0 C 0

a score=150482.000000
s hg38.chr4_KI270925v1_alt            314313 48 +    555799 GTTCAAATTTGGATTTAGAAAACAAATACCAAGCCTGCAAAACAGGAG
s panTro4.chr4_AACZ03155287_random     11435 48 -     33815 GTTCGAATTTGGATTTAGAAAACAAATACCAAGCCTGCAAAACAAGAG
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198111704 48 + 198332218 GTTCAAATTTGGATTTAGAAAACAAATACCAAGCCTGCAAAACAAGAG
i ponAbe2.chr4                     C 0 C 0
s nomLeu3.chr7b                      1336759 48 - 115148730 GTTCAAATTTGGATTTAGAAAACAAATACCAGGCTCGTAAAACAAGAG
i nomLeu3.chr7b                    C 0 C 0
s rheMac3.chr5                        352680 48 - 184069350 GTTCACGTTTCACTTTAGAAAACAAATACCAGGCTCGCAAAACAAGAG
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                        345186 48 - 189454096 GTTCGCGTTTCACTTTAGAAAACAAATACCAGGCTCGCAAAACAAGAG
i macFas5.chr5                     I 209 C 0
s papAnu2.chr5                        247640 48 - 178775436 GTTCACGTTtcactttagaaaacaaatacCAGGCTCGCAAAACAAGCG
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        309653 48 - 135778131 GTTCACGTTTCACTTTAGAAAACAAATACCAGGCTCACAAAACAAGAG
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        276010 46 + 190850796 GTTCAGGTTTAGATTTAGAAAATGAATACCAGGCTGACAAAAT--GAG
i calJac3.chr3                     C 0 C 0
s mm10.chr8                         41692923 48 + 129401213 TTTCCAAATTTAGTTTATAAAACACATATATTCCCTACAAGACAAGAG
i mm10.chr8                        C 0 I 394
s canFam3.chr16                     41620760 48 +  59632846 TTTCAAGTTTAGGTGTGGAAAACAAAGACTGTGCTCATAAAACAACAA
i canFam3.chr16                    C 0 C 0

a score=77774.000000
s hg38.chr4_KI270925v1_alt            314361 24 +    555799 ACCTGGAATA---------AATTATCAGCTTTG
s panTro4.chr4_AACZ03155287_random     11483 24 -     33815 ACCTGGAATA---------AATTATCAGCTTTG
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198111752 24 + 198332218 ACCTGGAATA---------AATTATCAGCTTTG
i ponAbe2.chr4                     C 0 C 0
s nomLeu3.chr7b                      1336807 24 - 115148730 ACCTGGAATA---------AATTATCAGCTTTG
i nomLeu3.chr7b                    C 0 C 0
s rheMac3.chr5                        352728 24 - 184069350 ACCTTGAATA---------AATTATCAGCTTTG
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                        345234 24 - 189454096 ACCTTGAATA---------AATTATCAGCTTTG
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                        247688 24 - 178775436 ACCTTGAATA---------AATTATCAGCTTTG
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        309701 24 - 135778131 ACCTTGAATA---------AATTATCAGCTTTG
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        276056 24 + 190850796 ACCTGGTATA---------AACTATCAGCTTTG
i calJac3.chr3                     C 0 C 0
s canFam3.chr16                     41620808 30 +  59632846 ---TAAATTATAGCCTTATAATTACCAGTTTTG
i canFam3.chr16                    C 0 C 0
e mm10.chr8                         41692971 394 + 129401213 I

a score=404010.000000
s hg38.chr4_KI270925v1_alt            314385 112 +    555799 AAAAAATCAGAGTTTGAAAAAATATATTAATTCTTATTTCAGAGACATCCATGTAATTCAGTGTCTTTCACAAGGCAGACAAAAAGATCTTAGGAGAGAGAGACAAAGGAAA
s panTro4.chr4_AACZ03155287_random     11507 112 -     33815 AAAAAATCAGAGTTTGAAAAAATATATTAATTCTTATTTCAGAGACATCCATGTAATTCAGTGTCTTTCACAAGGCAGACAAAAAGAGCTTAGGAGAGAGAGACAAAGGAAA
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198111776 112 + 198332218 AAAAAATCAGAGTTTGAAAAAATATATTAATTCTTATTTCAGAGACATCCATGTAATTCAGTGTCTTTCACAAGGCAGACAAAAAGAGCTTAGGAGAGAGAGACAAAGGAAA
i ponAbe2.chr4                     C 0 C 0
s nomLeu3.chr7b                      1336831 111 - 115148730 AAAAAATTAGAGTTTGAAAAAATATATTAATTCTTATTTCAGAGACATCCATGTAATTCAGTGTCTTTCACAAGGCAGACAAAAAGAGCTTAGGAGAGAGAGAC-AAGGAAA
i nomLeu3.chr7b                    C 0 C 0
s rheMac3.chr5                        352752 112 - 184069350 AAAAAAGTAGAGTTTGAAAAAATATGTTAATTCTTATTTCAGAGACATCCATGTAATTCATTGTCTTTCACAAGGCAGACAAAAAGAGCTTAGGCGAGAGAGAAAAAGGAAA
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                        345258 112 - 189454096 AAAAAAGTAGAGTTTGAAAAAATATGTTAATTCTTATTTCAGAGACATCCATGTAATTCATTGTCTTTCACAAGGCAGACAAAAAGAGCTTAGGCGAGAGAGAAAAAGGAAA
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                        247712 112 - 178775436 AAAAAAGTAGAGtttgaaaaaatatgttaattctTATTTCAGAGACATCCATGTAATTCATTGTCTTTCACAAGGCAGACaaaaagagcttaggcgagagagaaaaaggaaa
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        309725 112 - 135778131 AAAAAAGTAGAGTTTGAAAAAATATGTTAATTCTTATTTCAGAGACATCCATGTAATTCATTGTCTTTCACAAGGCAGACAAAAAGAGCTTAGGAGAGAGAGAAAAAGGAAA
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        276080 108 + 190850796 AAAAAGTCAGAATTTGAAAAAGCATATTG--TCTTATTTCAGAGACATTCATGTAATTCAGTGTCTTTCATAAGGAAGACAAAAAGAGCGGAGGGGAGAGAAA--AAAGAAA
i calJac3.chr3                     C 0 C 0
s mm10.chr8                         41693365 112 + 129401213 AAAAAACTAAAGGCTGGAGGATTATAGGAACCCATATTTCAGAGATGTCAGTAAGATTTACCGTCTTTCAGAAGATAGACAACACAAGCTTAAGGCAAAGAGAAAAAGGAAA
i mm10.chr8                        I 394 I 1116
s canFam3.chr16                     41620838 101 +  59632846 AGTAAATTAGAGTTTGAAGAACTATTTTCATTCTTATTTCAGAGATATCTATGCAATTTACTATCTTTCCTGATTT-TACAATAAGAACTTGCATGAGAAag----------
i canFam3.chr16                    C 0 C 0

a score=491465.000000
s hg38.chr4_KI270925v1_alt            314497 168 +    555799 ATAGAAACAAAGAAAAGGTGTTAAGTTTCTAAAAAA----cagacactgtgttgggc-tttgaacatatagaatagcatgaat--------tctcaccatgactacctgcagtagccagtattattcccacttcatggatgaaaga-ttcaatcttagagagtttaggtaacttgTAA-----CAGT
s panTro4.chr4_AACZ03155287_random     11619 168 -     33815 ATAGAaacaaacaaaagttgttaagtttctaaaaaa----caggcactgtgttgggc-tttgaacatatagaatagcatgaat--------tctcaccatgactacctgcagtagccagtattattcccacttcatggatgaaaga-ttcaatcttagagagtttgggtaacttataa-----cagt
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198111888 171 + 198332218 ATAGAAACAAACAAAAGGTGTTAAGTTTCTAAAAAC-CATcaggcactgtgttgggc-tttgaacatatagaatagcatgaat--------tctcaccgtgactacctgcagtaaccagtattattcccacttcatggatgaaaga-ttcaatcttagagagtttaggtaacttATAA-----CAGT
i ponAbe2.chr4                     C 0 C 0
s nomLeu3.chr7b                      1336942 171 - 115148730 ATAGAAACAAATAAAAAGTGTTAAGTTTCTAAAAAG-CATcaggcactgtgttgggc-tttgaacatgtataatagcaagaat--------tctccctgtgactacctgcagtagccagtattattcccacttcatggatgaaaga-ttcaatcttagagagtttaggtaacttATAA-----CAGT
i nomLeu3.chr7b                    C 0 I 506
s rheMac3.chr5                        352864 168 - 184069350 ATAGAAAC----AAAATGTGTTAAGTTTCTAAAAAAGCATcaggcgctgtgttgggc-tttgagcatatatagtagcatgaat--------tctcaccgtgactgcttgccgtagccagtattattcccacttcatggatgaaaga-ttcaatcttagagagtttgggtaacttATAA-----CAGT
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                        345370 168 - 189454096 ATAGAAAC----AAAATGTGTTAAGTTTCTAAAAAAGCATcaagcgctgtgttgggc-tttgagcatatatagtagcatgaat--------tctcaccgtgattgtttgccgtagccagtattattcccacttcatggatgaaaga-ttcaatcttagagagtttgggtaacttATAA-----CAGT
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                        247824 168 - 178775436 atagaaac----aaaatgtgttaagtttctaaaaaagCATCAGGCGCTGTGTTGGGC-TTTGAGCATATATAGTAGCATGAAT--------TCTCACCGTGACTGCTTGCCGTAGCCAGTATTATTCCCACTTCATGGATGAAAGA-TTCAATCTTAGAGAGTTTGGGTAACTTATAA-----CAGT
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        309837 168 - 135778131 ATAGAAAC----AAAATGTGTTAAGTTTCTAAAAAAGCATcaggcgctgtgttgggc-tttgagcacatatagtagcatgaat--------tctcaccgtgactgcttgccgtagccagtactattcccacttcatggatgaaaga-ttcaatcttagagagtttgggtaacttataa-----cagt
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        276188 175 + 190850796 ATAGAAAC----AAGGCGTGTTAAGTATCCAAAAA--CAccaggcgctgtgctgggc-atttgacagacataatagcgtgaattgcgtgaatttcaccatggccaccagcagtggcctgtattattcccgcctcatgtttgaaagattttaatcttagagagttcaggtaacttacac-----cagT
i calJac3.chr3                     C 0 C 0
s canFam3.chr16                     41620939 168 +  59632846 --------gactaaaatttattgagtgtctaataaa-catcaggcatcatattaggtatttggacttatgtgattgcctactt--------cttcacagtgaccaaatgcagtggacagtgttattcccatttcgtatatggcaaatttcaatctc--agagttgaggtaaattataaagggttagt
i canFam3.chr16                    C 0 C 0
e mm10.chr8                         41693477 1116 + 129401213 I

a score=366566.000000
s hg38.chr4_KI270925v1_alt            314665 114 +    555799 AGAAAAGCAAGAATTTAATTACAAATCCTATGTTCTCTTCTCTAtactaaatgtatgaactcaagcaagttatttatcctctttattcttcatgttttaatgggcataataatg
s panTro4.chr4_AACZ03155287_random     11787 114 -     33815 agaaaagcaagaatttaattacaaatcctatgttctcttctctatactaaatgtatgaactcgagcaagttatttatcctctttattcttcatgttttaatgggcataataatg
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198112059 109 + 198332218 AGAAAAGCAAGAATTTAATTAcaaatcctatg-----ttctctatactaaatgtatgaactcaagcaagttaattatcctctttattcttcatgttttaatgggcataataatg
i ponAbe2.chr4                     C 0 C 0
s nomLeu3.chr7b                      1337619 114 - 115148730 AGAAAAGCAAGAATTTAATTACAAATCCTATGTTctcttctctatactaaatgtatgaactcaagcaagttatttatcctctttattcttcatgttttaatgggcataataatg
i nomLeu3.chr7b                    I 506 C 0
s rheMac3.chr5                        353032 114 - 184069350 AGAAAAGCAAGAATTTAATTAcaaatcctatgttcttttctctatactaaatgtatgaactcaagcaagttatttaacctctttattcctcatgctttaatgggcataataatg
i rheMac3.chr5                     C 0 I 322
s macFas5.chr5                        345538 114 - 189454096 AGAAAAGCAAGAATTTAATTAcaaatcctatgttcttttctctatactaaatgtatgaactcaagcaagttatttaacctctttattcctcatgctttaatgggcataataatg
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                        247992 114 - 178775436 AGAAAAGCAAGAATTTAATTACAAATCCTATGTTCTTTTGTCTATACTAAATGTATGAACtcaagcaagttatttaacctctttattCCTCATGCTTTAATGGGCATAATAATG
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        310005 113 - 135778131 ggaaaagcaagaatttaattacaaatcctatgttcttttctctatactaaatgtacg-tctcaagcaaattatttaacctctttattcctcatgctttaatgggcataataatg
i chlSab2.chr7                     C 0 I 327
s calJac3.chr3                        276363 114 + 190850796 AGAAATGGAAGAATTTAATGAcaaatcctgtgttcttttctctttactaactgtatgaactcaagcaagttatgtcacctctcttttccttatgtttaaatgggcataataacc
i calJac3.chr3                     C 0 C 0
s canFam3.chr16                     41621107 111 +  59632846 ggacaagttaggatt---tcaaaaaactcatgttctgtcttcagttctaactgtatgaacttcatcaaactacttaatctccctgtgcctcattttcaaatgggcatattaata
i canFam3.chr16                    C 0 C 0
e mm10.chr8                         41693477 1116 + 129401213 I

a score=20663.000000
s hg38.chr4_KI270925v1_alt            314779 14 +    555799 gtttattcactaga
s panTro4.chr4_AACZ03155287_random     11901 14 -     33815 gtttattcactaga
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198112168 14 + 198332218 ctttattcactaga
i ponAbe2.chr4                     C 0 C 0
s nomLeu3.chr7b                      1337733 14 - 115148730 ctttattcactaga
i nomLeu3.chr7b                    C 0 C 0
s macFas5.chr5                        345652 14 - 189454096 cttttttcatgaga
i macFas5.chr5                     C 0 I 305
s papAnu2.chr5                        248106 14 - 178775436 CTTTTttcatgaga
i papAnu2.chr5                     C 0 C 0
s calJac3.chr3                        276477 14 + 190850796 cttatttcacaaga
i calJac3.chr3                     C 0 C 0
s canFam3.chr16                     41621218 14 +  59632846 atttcttcacagaa
i canFam3.chr16                    C 0 C 0
e mm10.chr8                         41693477 1116 + 129401213 I
e chlSab2.chr7                        310118 327 - 135778131 I
e rheMac3.chr5                        353146 322 - 184069350 I

a score=25641.000000
s hg38.chr4_KI270925v1_alt            314793 7 +    555799 atatttt
s panTro4.chr4_AACZ03155287_random     11915 7 -     33815 atatttc
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198112182 7 + 198332218 atatttt
i ponAbe2.chr4                     C 0 C 0
s nomLeu3.chr7b                      1337747 7 - 115148730 atatttt
i nomLeu3.chr7b                    C 0 C 0
s rheMac3.chr5                        353468 7 - 184069350 atatttt
i rheMac3.chr5                     I 322 C 0
s macFas5.chr5                        345971 7 - 189454096 atatttt
i macFas5.chr5                     I 305 C 0
s papAnu2.chr5                        248120 7 - 178775436 atttttt
i papAnu2.chr5                     C 0 I 525
s chlSab2.chr7                        310445 7 - 135778131 atatttt
i chlSab2.chr7                     I 327 C 0
s calJac3.chr3                        276491 7 + 190850796 atatttt
i calJac3.chr3                     C 0 C 0
s canFam3.chr16                     41621232 7 +  59632846 atatttt
i canFam3.chr16                    C 0 C 0
e mm10.chr8                         41693477 1116 + 129401213 I

a score=86340.000000
s hg38.chr4_KI270925v1_alt            314800 28 +    555799 aagaattaaa---gttaataattgtaaaAAT
s panTro4.chr4_AACZ03155287_random     11922 31 -     33815 aagaattaaaaaagttaataattgtaaaAAT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198112189 31 + 198332218 aagaattaaaaaagttaataattataaaAAT
i ponAbe2.chr4                     C 0 C 0
s nomLeu3.chr7b                      1337754 31 - 115148730 aagaattaaaaaaattaataattgtaaaAAT
i nomLeu3.chr7b                    C 0 C 0
s rheMac3.chr5                        353475 31 - 184069350 aagaattaaaaaagttaataattgtaaaAAT
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                        345978 31 - 189454096 aagaattaaaaaagttaataattgtaaaAAT
i macFas5.chr5                     C 0 C 0
s chlSab2.chr7                        310452 31 - 135778131 aagaattaaaaaagttaataattgtaaaaat
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        276498 31 + 190850796 aagaatcaaaaaagttaataactgtaaaAAT
i calJac3.chr3                     C 0 C 0
s canFam3.chr16                     41621239 31 +  59632846 aagaatttcaggagttaatagttgtaaaaat
i canFam3.chr16                    C 0 I 18
e mm10.chr8                         41693477 1116 + 129401213 I
e papAnu2.chr5                        248127 525 - 178775436 I

a score=50104.000000
s hg38.chr4_KI270925v1_alt            314828 17 +    555799 TCTCACAGAATTTTTTT
s panTro4.chr4_AACZ03155287_random     11953 17 -     33815 TCTCACAGAATTTTTTT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198112220 17 + 198332218 TATTAGAGTCTTTTTTT
i ponAbe2.chr4                     C 0 C 0
s nomLeu3.chr7b                      1337785 17 - 115148730 TCTCACAGAGTCTTTTT
i nomLeu3.chr7b                    C 0 I 1
s rheMac3.chr5                        353506 17 - 184069350 TCTCACAGAGTCTTTTT
i rheMac3.chr5                     C 0 I 1
s macFas5.chr5                        346009 17 - 189454096 TCTCACAGAGTCTTTTT
i macFas5.chr5                     C 0 I 1
s papAnu2.chr5                        248652 17 - 178775436 tCTCACAGagtcttttt
i papAnu2.chr5                     I 525 I 1
s chlSab2.chr7                        310483 17 - 135778131 tctcacagagtctTTTT
i chlSab2.chr7                     C 0 I 1
s calJac3.chr3                        276529 17 + 190850796 TCTCACAGTCTTTTTTT
i calJac3.chr3                     C 0 I 1
s canFam3.chr16                     41621288 17 +  59632846 TTTCACATGTTTTTTtt
i canFam3.chr16                    I 18 I 205
e mm10.chr8                         41693477 1116 + 129401213 I

a score=1169015.000000
s hg38.chr4_KI270925v1_alt            314845 411 +    555799 T-ATGTTTGTTGAATATGAAAGTATGATAATTACTTTTGTTGAGCAACTATCAGCATAGCAGATGTTTGAACTGTTTCTGCAG-AGGGATTTGGGCAAGACACCTTTTATTCTTATACCTGGGTTTTATTGTGAAGTTATATCCAGTTAA---GCTTGTGAGAATTTGGAGTGCAGCCTGCAGTTGTATGATGGCTGAG--GAATACAGGAACATTGTGGTTACTGTAAACATG-----------------------AGAGTAATAACTGCAAACTAAGGAATAA-----------------------------------CAGTATATTAatcaggatcctccaaagaaacagaa--------------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg-tagaga-------gagattatttgtagggaattggctgccacagttatagaggctgagaagtcctgtgatctctagttggcaagctgaa
s panTro4.chr4_AACZ03155287_random     11970 408 -     33815 --ATGTTTGTTGAATATGAAAGTATGATAATTACTTTTGTTGAGCAACTATCAGCATAGCAGATGTTTGAACTGTTTCTGCAG-AGGGATTTGGGCAAGACACCTTTTATTCTTATACCTGGGTTTTATTGTGAAGTTATATCCAGTTAA---GCTTGCGAGAATTTGGAGTGCAGCCTGCAGTTGTATGATGGCTGAG--GAATACAGGAACATTGTGGTTACTGTAAACATG-----------------------AGAGTAATAACTGCAAACTAAGGAATAA-----------------------------------CAGTATATTAatcaggatcctccaaagaaacagaa--------------gtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg-taggga-------ga--ttaattgtagggaattggcttccacaattatagaggctgagaagtcctgtgatctctagttggcaagctgaa
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198112237 393 + 198332218 --ATGTTTGTTGAATATGAAAGTATGATAA----TTTTGTTGAGCAACTATCAGCATAGCAGATGTTTGAACTGTTTCTGCAG-AGGGATTTGGGCAAGACACCTTTTATTCTTATACCTGGGTTTTA-TGTGAAGTTATATCCAGTTAA---GCTTGCGAGAATTTGGAGTGCAGCCTGCAGTTGTATGATGGCTGAG--GAATACAGGAACATTGTGGTTACTGTAAACATG-----------------------AGAGTAATAACTACAAACTAAGGAATAA-----------------------------------CAGTATATTAatcaggatcctccaaagaaacagaa--------------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt-----------aga-------ga--ttaattgtagggaattggctcccacaattatagaggctgagaagtcctgtgatctgtagttggcaagctgaa
i ponAbe2.chr4                     C 0 C 0
s nomLeu3.chr7b                      1337803 408 - 115148730 T-ATGTTTGTTGAATATGAAAGTATGATAATTACTTTTGTTGAGCAACCATCGGCATAGCCGATGTTCGAACTCTTTCTGCAG-AGGGATTTGGGCAAGACACCTTTTGTTCTTATACCTGGGTTTTATTGTG-AGTTTTATCCAGTTAA---GCTTGCGAGAATTTGGAGTGCAGCTTGCAGTTGTACAATGGCTGAG--GAATATGAGAACATTGTGGTTACTGTAAAAATA-----------------------AGAGTAATAACTACAAACTAAGGAATAA-----------------------------------CCTTATATTAatcagggtcctccaaagaaacagaa--------------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg-tgtaga-------ga--ttaattgtagggaattggctcccacaattatagaggctgagaagtcctgtgatctgtagttggcaagctgaa
i nomLeu3.chr7b                    I 1 C 0
s rheMac3.chr5                        353524 381 - 184069350 T-ATGTTTGTTGAATATGAAATTATGATAATTACTTTTGTTGAGCAACCATCAACATAGCAGATGTTGGAATCGTTTCTGCAG-AGGGATTTGTGCAAG--ACCTTCTGTTCTTTTACCTGGGTTTTATTGTG-AGTTATATCGAGTTAA---GCTTTCGAGAATTTCGAGTGCAGCCTGCAGTTGTACAATGGCTGAG--GAATACGGGAACATTGTGGTTACTGTAAAAATG-----------------------AGGGTAATAATTACAAACTAAGGAATAA-----------------------------------CAGTATACTAatcaggattctccaaagaaacagaa----------------------atgtgtgtgtgtgtgtgtgtgtgt---------------------ga--ttaattgtagggaactggctcccacaaccatagaggctaagaagtcctg----ctgtagtcggcaagctgaa
i rheMac3.chr5                     I 1 C 0
s macFas5.chr5                        346027 383 - 189454096 T-ATGTTTGTTGAATATGAAATTATGATAATTACTTTTGTTGAGCAACCATCAACATAGCAGATGTTGGAATCGTTTCTGCAG-AGGCATTTGTGCAAGACACCTTCTGTTCTTTTACCTGGGTTTTATTGTG-AGTTATATCGAGTTAA---GCTTTCGAGAATTTCGAGTGCAGCCTGCAGTTGTACAATGGCTGAG--GAATACGGGAACATTGTGGTTACTGTAAAAATG-----------------------AGAGTAATAATTACAAACTAAGGAATAA-----------------------------------CAGTATACTAatcaggattctccaaagaaacagaa----------------------atgtgtgtgtgtgtgtgtgtgtgt---------------------ga--ttaattgtagggaactggctcccacaaccatagaggctaagaagtcctg----ctgtagtcggcaagctgaa
i macFas5.chr5                     I 1 C 0
s papAnu2.chr5                        248670 371 - 178775436 t-atgtttgttgaatATGAAATTATGATAATTACTTTTGTTGAGCAACCATCAACATAGCAGATGTTGGAATCGTTTCTGCAG-AGGGATTTGTGCAAGACACCTTCTGTTCTTTTACCTGGGTTTTATTGTG-AGTTATATCGAGTTAA---GCTTTCGGGAATTTCGAGTGCAGCCTGCAGTTGTACAATGGCTGCG--GAATACGGGAACATTGTGGTTACTGTAAAAATG-----------------------AGAGTAATAATTACAAACTAAGGAATAA-----------------------------------CAGTATACTAATCAggattctccaaagaaacagaa----------------------------------gtgtgtgtgtgt---------------------ga--ttaatTGTAGGGAACTGGCTCCCACAACCATAGAGGCTAAGAAGTCCTG----CTGTAGTCGGCAAGCTGAA
i papAnu2.chr5                     I 1 C 0
s chlSab2.chr7                        310501 405 - 135778131 T-ATGTTTGTTGAATATGAAATTATGATAATTACTTTTGTTGAGCAACCATCAGCATAGCAGATGTTGGAATCGTTTCTGCAG-AGGGATTTATGCAAGACACCTTCTGTTCTTTTACCTGGGTTTTATTGTG-AGTTGTATCGAGTTAA---GCTTTCGAGAATTTCGAGTGCAGCCTGCAGTTGTACAATGGCTGAG--GAATACGGGAACATTGTGGTTACTGTAAAAATG-----------------------AGAGTAATAATTACAAACTAAGGAATAA-----------------------------------CAGtatactaatcaggattctccaaagaaacagaagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt---------------------ga--gtattagtagggaactggctcccacaaccatagaggctaagaagtcctg----ctgtagttggcaagctgaa
i chlSab2.chr7                     I 1 I 208
s calJac3.chr3                        276547 454 + 190850796 TAATGTTTGTTGAATATAAAAGTGTGATAATTACTTTTGTTGAGCAGCCAACAGCATAGAAGATGTTCACATTGTTTTTGCAG-AGAGATTTGGGCAAGACGCATTTTGTTCCTTTACCTGGGTTTTATTGTG-AATTATATCCAGTTGA---GCTTGTGAGAATTTGGAGTGCAGCCTGTGGTGGTACAATGGCTGAGATGAACACAGAAACACTGGGGTTACTGTAAAAATG-----------------------AGAGTAATAACTACAAACTAAGGAGTAACAGATCAATCAGGATTCTCCAAAGAAACAGGACAGCAGTAGATCAatcaggtttctccaaagaaacagaa--------------ctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacagagaattaattga--ttaattgtagggaattggctcacacaattatagaggctgagaagtcctgtgatctatagttggcaagctgaa
i calJac3.chr3                     I 1 C 0
s canFam3.chr16                     41621510 404 +  59632846 T-ATATTTATTGCATATGAAAGTatgacaatgac-actactgagcaaccatcagcatatcagatgtttgaattgtttttgcagtggggttttgggcaaggcaccctaagttcttttacctggattgtattgtg-aattatattcaattgactggctggctagaatttggagtgcagcccatggctatgCAGTGGCTGAG--GAATATTAACACATTATGGCTATTGCAATAAAGAGAGTAATATCTTTTTGCAATAAAGAGTAATATCTTTAAACTAAGGAATAA-----------------------------------GAGTGTTTTGGT----GTTCTCCACAGATATAGAG------------CAGACAGGATGGATGCATGCATGTGTTTGTGTGTTCATGTG--------------TA--CTTATTATAAAGAGTTGGCTTCTGTGATCATA-AGGCTGACAAGGTC--------------------CTAa-
i canFam3.chr16                    I 205 C 0
e mm10.chr8                         41693477 1116 + 129401213 I

a score=2459387.000000
s hg38.chr4_KI270925v1_alt            315256 761 +    555799  
s panTro4.chr4_AACZ03155287_random     12378 761 -     33815  
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198112630 761 + 198332218  
i ponAbe2.chr4                     C 0 C 0
s nomLeu3.chr7b                      1338211 759 - 115148730  
i nomLeu3.chr7b                    C 0 C 0
s rheMac3.chr5                        353905 761 - 184069350  
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                        346410 761 - 189454096  
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                        249041 761 - 178775436  
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        311114 758 - 135778131  
i chlSab2.chr7                     I 208 C 0
s calJac3.chr3                        277001 752 + 190850796  
i calJac3.chr3                     C 0 I 2917
s canFam3.chr16                     41621914 699 +  59632846  
i canFam3.chr16                    C 0 C 0
e mm10.chr8                         41693477 1116 + 129401213 I

a score=1032867.000000
s hg38.chr4_KI270925v1_alt            316017 339 +    555799 CGAGGATCCCTGGGGAATGCACCTTCCCTGAGGTATGATGTGACACTTACAATATACACTGATGTATAGTGTATACGTTTTATTGAGTTGGAGCCAGATGGGGTCTATTTACTCCCAgttgattttcagaatcatcatttttatatattctcaacaaacctgtccctttctctcctcgtggtaaccacctggcacaactctatcccttgtaaatccagctctcc-acagagctgagtgtggctgga-gaagcccacagtgacgctgattgctcttcccttacattcgtgatcactaaccggggctggctgcctgatttgcagggcccagggcaaaatgaaa
s panTro4.chr4_AACZ03155287_random     13139 339 -     33815 CAAGGATCCCTGGAGAATGCACCTTCCCTGAGGTATGATGTGACACTTACAATATACACTGATGTATATTGTATACGTTTTATTGAGTTGGAGCCAGATGGGGTCTATTTACTCCCAgttgattttcagaatcatcatttttatatattctcaacaaacctgtccctttctctcctcgtggtaaccacctggcacaactctatcccttgtaaatccagctctcc-acagagctgagtgtggctgga-gaagcccacagtgacgctgattgctcttcccttacattcgtgatcactaaccggggctggctgcctgatttgcagggcccagggcaaaatgaaa
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198113391 339 + 198332218 CAAAGATCCCTGGAGAATGCACCTTCCCTGAGGTATGATGTGACACTTACAATATACACTGATGTATATTGTATACGTTTTATTGAGTTGGAGCCAGATGGGGTCTATTTACTCCCAgttgattttcagaatcatcatttttatatattcttaacaaacctgtccctctctctcctcatggtaaccacctggcacaactctatcccttgtaaatccagctctcc-acagagctgagtgtggccgga-gaagcccacagtgacactgattgctcttcccttacattcgtgatcactaaccggggctggttgcctgatttgcagggcccagggcaaaatgaaa
i ponAbe2.chr4                     C 0 C 0
s nomLeu3.chr7b                      1338970 339 - 115148730 CAAAGATCCCTGGAGAATGCACCTTCCCTGAGGTATGGTGTGACATTTACAATACACACTGATGTATATTGTATACGTTTTATTGAGTTGGAGCAAGATGGGGTCTATTTACTCCCAgttgattttcagaatcatcatttttgtatattctcaacaaacctgtccctctctcgcctcatgataactacctggcacaactctatcccttgtaaatccagctttcc-acagagctgagtgtggctgga-gaagcccacagcgacgctgattgctcttcccttacattcgtgatcacTGATcggggctggctgcctgatttgcagggcccagggcaaaatgaaa
i nomLeu3.chr7b                    C 0 C 0
s rheMac3.chr5                        354666 339 - 184069350 CAAAGCTCCCCGGAGAATGCACCTTCCCGGAGGTGTGAGGTGACACTTACAATGTACACGGATGTATATCGTATACCTTGGATTGAGTTGCAGCAAGATGGAGTCTGTTTGCTCCCACTTGATTTTCAGaatcatcacttttatatattctcagcaaacctgtctctctctctcctcgtggtaaccacctggcacaactctaccccttgtaaatccagctctcg-acagagctgagcgtggccgga-gaagcccacagcgacgctgactgctgtccctttacatgtgtgatcacTCACTGgggctggctgcctgatttgcagggcccagggcaaaatgaaa
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                        347171 339 - 189454096 CAAAGCTCCCCGGAGAATGCACCTTCCCGGAGGTGTGAGGTGACACTTACAATGTACACGGATGTATATCGTATACCTTGGATTGAGTTGCAGCAAGATGGAGTCTGTTTGCTCCCACTTGATTTTCAGaatcatcacttttatatattctcagcaaacctgtctctctctctcctcgtggtaaccacctggcacaactctaccccttgtaaatccagctctcg-acagagctgagcgtggccgga-gaagcccacagcgacgctgactgctgtccctttacatgtgtgatcacTCACTGgggctggctgcctgatttgcagggcccagggcaaaatgaaa
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                        249802 339 - 178775436 CAAAGCTCCCCGGAGAATGCACATTCCCCGAGGTGTGAGGTGACACTTACAATGTACACGGATGTATATTGTATACCTTGGATTGAGTTGGAGCAAGATGGAGTCTGTTTGCTCCCACTTGATTTTCAGAATCATCACTTTTATATATTCTCAGCaaacctgtctctctctctcctcgtGGTAACCACCTGGCACAACTCTACCTCTTGTAAATCCCGTTCTCC-ACAGAGCTGAGCGTGGCTGGA-GAAGCCCACAGCGACGCTGACTGCTGTCCCTTTACATGTGTGATCACTCACTGGGGCTGGCTGCCTGATTTGCAGGGCCCAGGGCAAAATGAAA
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        311872 337 - 135778131 CAAAGCTCCCCGGAGAATGCACCTTCCCGGAGGTGTGAGGTGACACTTACAATGTACACGGATGTATATCGTATACCTTGGATTGAGTTGGAGCAAGATGGAGTCTGTTTGCTCCCAgttgattttcagaatcatcacttctatatattctcagcaaacctg--tctctctctccttgtggtaaccacctggcagaactctatcccttgtaaatcccgctctcc-acagagctgagcgtggctgga-gaagcccacagcgacgctgactgctgtccctttacatgtgtgatcactaacTGgggctggctgcctgatttgcagcgcccagggcaaaatgaaa
i chlSab2.chr7                     C 0 I 9
s calJac3.chr3                        280670 272 + 190850796 CAAAGAGCCCTGGGGAATGCACCTCCCCTGAGGTGTGATGTGACACTTAACATACACACTGCTGTA-----TATACGTTGTGTTGAGTTGGAGCAAGATGGAGTCTATTTactcctagttgatcttcagaatcatcatttttatatgttctcaacaaacctgtgcctctctgtccttatagtaagtacctggcacaa-tctaggccctgtaaatccagctctcc-acAGAGCTGAGTGCggctgga--------------------------------------------------------------tgtctgatttgcagggctcagggcaaaatgcaa
i calJac3.chr3                     I 2917 C 0
s canFam3.chr16                     41622613 333 +  59632846 CAAAGAGCCCTGGAGAATGGTCATTCTCCGAGGTTTTATATGATACTTAAAATATATACTGATGCCC----TCACTTTTATATTCAG-TGGGGCAAGTTGGAGTCTATTCACTACCAATTGATCTTTA-ATTTATCAAtttcatatattctcaacaaacttgtccctctcttacctcatgatacctacctggcacaactccaacttttgaaatgccacttttccaacccagctaaatgtggctggaaaaaacccaccggcacattgattggtcttgcttaaaattcatgatcactagcc-Aggttggcttcataatttgcag-gtctagtgccagatgaaa
i canFam3.chr16                    C 0 C 0
e mm10.chr8                         41693477 1116 + 129401213 I

a score=35965.000000
s hg38.chr4_KI270925v1_alt            316356 13 +    555799 gtgtggggctgtt
s panTro4.chr4_AACZ03155287_random     13478 13 -     33815 gtgtggggctgtt
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198113730 13 + 198332218 gtgtggggctgtt
i ponAbe2.chr4                     C 0 C 0
s nomLeu3.chr7b                      1339309 13 - 115148730 gtgtggggctgtt
i nomLeu3.chr7b                    C 0 C 0
s rheMac3.chr5                        355005 13 - 184069350 gtggggggctgtt
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                        347510 13 - 189454096 gtggggggctgtt
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                        250141 13 - 178775436 GTGGGGGGCTGTT
i papAnu2.chr5                     C 0 C 0
s calJac3.chr3                        280942 13 + 190850796 gtgtggggctgtt
i calJac3.chr3                     C 0 C 0
s canFam3.chr16                     41622946 13 +  59632846 ctgtggggcccct
i canFam3.chr16                    C 0 C 0
e mm10.chr8                         41693477 1116 + 129401213 I
e chlSab2.chr7                        312209  9 - 135778131 I

a score=332122.000000
s hg38.chr4_KI270925v1_alt            316369 123 +    555799 cgttcaaaagacattttta-aaaagcctcattaaatgcactaaaat--ctaaggtgttttcattttcaaaataatttgtgacttataaaccataaagca-ggcaacagtgacacatgagaaataaca
s panTro4.chr4_AACZ03155287_random     13491 123 -     33815 cgttcaaaagacattttta-aaaagcctcattaaatgcactaaaat--ctaaggtgttttcattttaaaaataatttgtgacttataaaccataaaaca-ggcaacagtgacacacaagaaataaca
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198113743 123 + 198332218 tgttcaaaatacattttta-aaaagcctcattaaatgcactaaaat--ctaaggcgttttcattttaaaaataatttgtgacttataaaccataaaaca-ggcaacagtgacacacaagaaacaata
i ponAbe2.chr4                     C 0 C 0
s nomLeu3.chr7b                      1339322 122 - 115148730 tgttcaaaagacattttta-aaaagcctaattaaatgcactaaaat--ctaaggcgttttcattttaaaaataatttgtgacttataaaccataaa-ca-ggcaacagtgacacacgagaaataaca
i nomLeu3.chr7b                    C 0 C 0
s rheMac3.chr5                        355018 118 - 184069350 ggttcaaaagaca--ttta-aaaaacctctttaaatgcactaaaat--ctaacgcgttttcgttttaaa---aatttgtgacttgtaagccataaaaca-ggcaacagtgacacacaagaaataaca
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                        347523 118 - 189454096 ggttcaaaagaca--ttta-aaaaacctctttaaatgcactaaaat--ctaacgcgttttcgttttaaa---aatttgtgacttgtaagccataaaaca-ggcaacagtgacacacaagaaataaca
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                        250154 118 - 178775436 GGttcaaaagaca--ttta-aaaaacctCTTTAAATGCACTAAAAT--CTAACgcgttttcattttaaa---aatttgtgactTGTAAGCCATAAAACA-GGCAACAGTGACACACGAGAAATACCA
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        312218 121 - 135778131 tgttcaaaagaca--ttta-aaaaacctctttaaatgcgctaaaat--ctaacgcgttttcattttaaaaataatttgtgtcttgtaagccatgaaaca-ggcaacagtgacacacgagaaataaca
i chlSab2.chr7                     I 9 C 0
s calJac3.chr3                        280955 101 + 190850796 tgttaaaaagaca--tgaacgaaagcatcattaaatgcac----------------ttttcctttaaaaaataatttg-------taaaccataaaaca-ggcaacagtgacacatgagaaatagca
i calJac3.chr3                     C 0 C 0
s canFam3.chr16                     41622959 122 +  59632846 tgtttgaaaggca----gg-aaaaaagtcattaagtgcactaaaataatcaaagttttttgactttaaaaatattttatgacttataaaccatattacagggtaatagtggtacatgaatagtaata
i canFam3.chr16                    C 0 I 1599
e mm10.chr8                         41693477 1116 + 129401213 I

a score=166580.000000
s hg38.chr4_KI270925v1_alt            316492 57 +    555799 taaacttacaaattgc--aaaaattaTGTGTGACTCCACAGTCACACACATTAAGCCAC
s panTro4.chr4_AACZ03155287_random     13614 57 -     33815 taaacttacaaattgc--aaaaattaTGTGTGACTCCACAGTCACACACATTAAGCCAC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198113866 57 + 198332218 taaacttacaaattgc--aaaaattaTGTGTGACTCCACAGTCACACACATTAAGCTAC
i ponAbe2.chr4                     C 0 C 0
s nomLeu3.chr7b                      1339444 57 - 115148730 caaacttacaaattgc--aaaaaTTATGTGTGACTCCACAGTCACACACATTAAGACAC
i nomLeu3.chr7b                    C 0 C 0
s rheMac3.chr5                        355136 57 - 184069350 taaacttataaattgc--aaaaattaCGTGTGACTCCACAGTCACCCACATGAAGCCAT
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                        347641 57 - 189454096 taaacttacaaattgc--aaaaattaCGTGTGACTCCACAGTCACCCACATGAAGCCAT
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                        250272 57 - 178775436 TAAACTTACAAAGTGC--AAAAATTACGTGTGACTCCACAGTCACACACGTGAAGCCAT
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        312339 57 - 135778131 taaacttacaaattgc--aaaaaTTATGTGTGACTCCACAGTCACACACATGAAGCCAT
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        281056 59 + 190850796 taaacttacaaattgcaaaaaaATTGTGTGTGACTCCACAGTCGCCCATATGAAGCCAT
i calJac3.chr3                     C 0 C 0
e mm10.chr8                         41693477 1116 + 129401213 I
e canFam3.chr16                     41623081 1599 +  59632846 I

a score=1107619.000000
s hg38.chr4_KI270925v1_alt            316549 360 +    555799 CAATGCAGCTGGCCCTGTCGCTaaccgctagtaggctccta-gcacacctgccattctaatgccttccctcgctcattcatgtttctgggaggctccttcagattctctctcctcttaagcctctaatgttttctctcccatcctcactctcagttaatgactttggggtatatgtcactgaaagaaaaacaaatttaagccaaaaccagaat----aagatgagagcttctgcaaactgctacttcctcatcacccc--ccacctggatctatgtccaaaca--c-tgtcttcctttttgttac-ccataagttaaactggagcactaaatcccaatgtctctctcgaattccagcaattctccttctac
s panTro4.chr4_AACZ03155287_random     13671 360 -     33815 CAATGCAGCTGGCCCTGTCGCTAACTGCTAGTAGGCTCCTA-GCACACCTGCCATTctaatgccttccctcgctcattcatgtttctgggaggctccttcagattctctcttctcttaagcccctaatgttttctctcccatcctcactctcagttaatgactttggggtatatgtcactgaaagaaaaacaaatttaagccaaaaccagaat----aagatgagagcttctgcaaactgctacttcctcatcacccc--ccacctggatctatgtccaaaca--c-tgtcttcctttttgttac-ccataagctaaactggagcactaaatcccaatgtctctctcgaattccagcaattctccttctac
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198113923 362 + 198332218 CAATGCAGCTGGCCCTGTCGGTaaccgctagtaggctccca-gcacacctgccattctaatgccttccctcactcattcatgtttctgggaggctccttcagattctctctcctcttaagcctctaatgttttctctcccatcctcactcttagttaatgactttgaggtatatgtcactgaaagaaaaacaaatttaagccaaaaccagaat----aagatgagagcttctgcaaactgctacttcctcttcacccc--ccacctggatctatgtccaaacactc-tgtcttcctttttgttac-ccataagttaaactggagaactgaatcccaatgtctctctcgaattccagcaattctccttctac
i ponAbe2.chr4                     C 0 C 0
s nomLeu3.chr7b                      1339501 361 - 115148730 CAATGCAGCTGGCCATGTCGGTaaccgctagtaggctccta-gcacacctgccattctaatgccttccctcactcattcctgtttct-ggaggctccttcagattctctctcctctcaagcctctaacgttttctctcccattctcactcacagttgatgactttggggtatatgtcactgaaagaaaaacaaatttaagccaaaaccagaat----aagatgagagcttctgcaaactgctacttcctcatcacccc--ccacctggatctacggccaaacactc-tgtcttcctttttgttac-ccagaagttaaactggtgcactaaatcccaatgtctctctcgaattccagcaattctccttctac
i nomLeu3.chr7b                    C 0 n 0
s rheMac3.chr5                        355193 359 - 184069350 CAATGTGGCTGGCCCTGTCGGTAATGGCTAGGAGGCTCCTA-GCACACCTGCCATTCCAAC-CCTTCCCtcgctcattcacgcttctgggaggctacttcagattctccctcctc--aagcctccaacgttttctctcccatcctcactctcagttgatgactttggggtatatgtcactgaaggaaaagcaaatttaagctaaaaccagaat----aagatgagagcttctgcaaactgctactccctcatcacccc--caacctggatctatgtccaaacactc-tgacttcttttttgttac-ccgtgagttaccctggagcactaaatcccaatgtctctcttgaattacaacaattctccttctac
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                        347698 359 - 189454096 CAATGTGGCTGGCCCTGTCGGTAATGGCTAGGAGGCTCCTA-GCACACCTGCCATTCCAAC-CCTTCCCtcgctcattcacgcttctgggaggctacttcagattctccctcctc--aagcctccaacgttttctctcccatcctcactctcagttgatgactttggggtatatgtcactgaaggaaaagcaaatttaagctaaaaccagaat----aagatgagagcttctgcaaactgctactccctcatcacccc--caacctggatctatgtccaaacactc-tgacttcttttttgttac-CCGTGAGTTACCCTGGAgcactaaatcccaatgtctctctcgaattacaacaattctccttctac
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                        250329 359 - 178775436 CAATGCGGCTGGCCCTGTCGGTAATGGCTAGGAGGCTCCTA-GCACACCTGCCATTCCAAC-CCTTCCCTCGCTCATTCACGCCTCTGGGAGGCTACTTCAGATTCTCCCTCCTC--AAGCCTCCAATGTTTTCTCTCCCATCCTCACTCTCAGTTGATGACTTTGGGGTATATGTCACTGAAGGAAAAGCAAATTTAAGCTAAAACCAGAAT----AAGATGAGAGCTTCTGCAAACTGCTACTCCCTCATCACCCC--CAACCTGGATCTATGTCCAAACACTC-TGACTTCTTTTTTGTTAC-CCGTGAGTTACCCTGGAGCACTAAATCCCAATGTCTCTCTCGAATTACAGCAATTCTCCTTCTAC
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        312396 359 - 135778131 CAATGCGGCTGGCCCTGTCGGTAATGGCTAGGAGGCTCCTA-GCACACCTGCcattcccac-ccttccctcactcattcacgcttctgggaggctacttcagattctccctcccc--aagcctccaacgttttctctcccatcctcactctcagttgatgactttggggtatatgtcactgaaggaaaagcaaatttaagctaaaaccagaat----aagatgagagtttctgcaaactactactccctcatcacccc--cgacctggatctatgtccaaacactc-tgacttcttttttgttac-CTGTGAGTTACCCTGGAgcactaaatcccaatgtctctctcgaattacagcaattctccttctac
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        281115 357 + 190850796 TGGCGCAGCTGGTCTTGCCAGTAA-GGCTAGCAGGCTTCCA-GCACGCCTGCCATTCCAATGCCTTCCCGCGCTCCTTCCTGcttct-ggaagctgtctcagattctccctccgtttaagcctgcaacgctttctctcccatcctcactctcagttgatgactttggggtatatttcactgaaagcaaaacaaatttaaggcaaaaccagaat----aagatgacagcttctgcaaactgctgctccctcatcgcccc--c-acctgggtctacgtccaaacactcttgtcttcctttttgttac-ccataagttaccccggagcaccaaatcccaacatcgctctccaattccagccgctcttctac---
i calJac3.chr3                     C 0 C 0
s canFam3.chr16                     41624680 332 +  59632846 caatgaagatggtcctgTGACC-----CTCATGGACTCCTGTGGACACC-AACATCCTACT-CTTTCCATAGTTCGTTCATGCTTGCCTGAGGCCActtca----------------aagcctccaacatttcctctcccatcttcactctcagttggtgaccttggaccatatttcactgaaaaaa--------------caagaacagaagtacaaagatgacagtttctatagaccatcgttccctcatcgacacggcaatctatctctgtgtgcagacactc-caccttctttccccttactctatgggttatgctggggcactaagtctcaacatctccctccaa-tccagcctttctctccctgc
i canFam3.chr16                    I 1599 C 0
e mm10.chr8                         41693477 1116 + 129401213 I

a score=723115.000000
s hg38.chr4_KI270925v1_alt            316909 299 +    555799 ctcccacaatgtcgacttttctgtctctact-ggagtgttcctatcaacatgcacagttgaattt-tccc-atct-ggcactacctgtcctgatctt-atgttcctttcaaactactgcactatttctgctttcttcagagtggaattctttggaagggttttcatatttaccatctccaatttctgtcttcatttttcctctcagatccac-taggtctgacagtttcctctgtcctttcacagaaattgctcatttcaaaatgtgaatatcttccatgttgttatagcccatgatcaattctt
s panTro4.chr4_AACZ03155287_random     14031 299 -     33815 ctcccacaatgtcgacttttctgtctctact-ggagtgttcttatcaacatgcacagtggaattt-tccc-atct-ggcactacctgtcctgatctt-atgttcctttcaaactactgcactatttctgctttcttcagagtgaaattctttgaaagggttttcatatttaccatctccaatttctctcttcatttttcctctcagatccac-taggtctgacagtttcctctgtcctttcacagaaattgctcatttcaaaatgtgaatatcttccatgttgttacagcccatgaccaattctt
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198114285 299 + 198332218 ctcccacaatgtcgacttttctgtctctact-ggagtgttcctgtcaacacgcacagtggaattt-tccc-atct-ggcactacctgtcctggtctt-atgttcctttcaaactactgcactatttctgctttcttcaaagtgaaattctttgaaagggttttcgtatttaccatctccaatttctctctccatttttcctctcagatccac-taggtctgacagtttcctctgtcctttcacagaaattgctcatttcaaaatgtgaatatcttccatgttgttacagcccatgatcaattctc
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                        355552 299 - 184069350 ctcccacaatgtcgatttttctgtctctact-gcagtgttcctatcaacatgcacagtggaattt-tcat-atct-ggcactacctgttctgatctt-acattcctctcaaactactacactatttctgctttcttcagagtgaaattctttgaaagggttttcatatttaccatctccaatttctctcttcatttttcctcttagatccac-tcggtctgacggttgcctctgtcctttcacagaaattgctcatttcaaaatgtgagtatcttccatgctgttacagcccatgatcagtcctt
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                        348057 299 - 189454096 ctcccacaatgtcgatttttctgtctctact-gcagtgttcctatcaacatgcacagtggaattt-tcat-atct-ggcactacctgttctgatctt-acattcctctcaaactactacactatttctgctttcttcagagtgaaattctttgaaagggttttcatatttaccatctccaatttctctcttcatttttcctcttagatccac-tcggtctgacggttgcctctgtcctttcacagaaattgctcatttcaaaatgtgagtatcttccatgctgttacagcccatgatcagtcctt
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                        250688 295 - 178775436 CTCCCACAATGTCGATTTTTCTGTCTCTACT-GCAATGTTCCTATCAACATGCACAGTGGAATTT-TCAT-ATCT-GGCACTACCTGTTCTGATCTT-ACGTTCCTCTCAAACTGCTACactatttctgctttcttcagagtGAAATTCTTTGAAAGGGTTTTCATATTTACCATctccaatt----tcttcatttttcctcttaGATCCAC-TCGGTCTGACGGTTGCCTCTGTCCTTTCACAGAAATTGCTCATTTCAAAATGTGAGTATCTTCCATGCTGTTACAGCCCATGATCAGTCCTT
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        312755 299 - 135778131 ctcccacaatgtcggtttttctgtctctact-gcaatgttcctatcaacatacacagtggaattt-tcac-atct-ggcactacctgtcctgatctt-atgttcctctcaaacgactacactatttctgctttcttcagagtgaaattctttggaagggttttcatatttaccatctccaatttctctcttcatttttcctctcagatccac-tcggtctgacggttgcctctgtcctttcacagaaattgcttatttcaaaatgtgagtatcttccatgctgttacagcccatgatcagtcctt
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        281472 301 + 190850796 ctcccataatgtcgagttttcctcctctgttcattaggttcctttcgagatgcacagtggaattt-ctttgatctaagcaccacctgtccttatcttaacattcctctcaaacttctacactgtttccgctttcttcagagtgaaatgctttgaaagcg-tttcatatttactgtctccagtttcttccttcgtttttcctcccagatccac-ttggtctgacctttggctctctcctttcaca-aaattgctcatttcaaaatgttaatattttccatgttgttacagccactgatcaattctt
i calJac3.chr3                     C 0 I 1561
s canFam3.chr16                     41625012 272 +  59632846 -ccccatagcaccg--------------act-gttagttacctctctatg---acagtggaatttctccc-acta-aatgtaacttttcctgatctt-cagtttccctctagctactgccctatttctgttttctttggagtgaaattctttga----gtttccatatttgctgtctcca-tttctcacctcactattcctcttaaactcacttcaatcagatgtttgcttccatcatatcaaaggaatttctaatgttagagtactaataactccca---tgttaaatccagtggtcagct---
i canFam3.chr16                    C 0 C 0
e mm10.chr8                         41693477 1116 + 129401213 I
e nomLeu3.chr7b                      1339862   0 - 115148730 I

a score=1012385.000000
s hg38.chr4_KI270925v1_alt            317208 518 +    555799  
s panTro4.chr4_AACZ03155287_random     14330 517 -     33815  
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198114584 519 + 198332218  
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                        355851 520 - 184069350  
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                        348356 520 - 189454096  
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                        250983 515 - 178775436  
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        313054 518 - 135778131  
i chlSab2.chr7                     C 0 C 0
s canFam3.chr16                     41625284 495 +  59632846  
i canFam3.chr16                    C 0 C 0
e mm10.chr8                         41693477 1116 + 129401213 I
e calJac3.chr3                        281773 1561 + 190850796 I
e nomLeu3.chr7b                      1339862   0 - 115148730 I

a score=2918679.000000
s hg38.chr4_KI270925v1_alt            317726 1253 +    555799  
s panTro4.chr4_AACZ03155287_random     14847 1253 -     33815  
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198115103 1257 + 198332218  
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                        356371 1240 - 184069350  
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                        348876 1240 - 189454096  
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                        251498 1237 - 178775436  
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        313572 1241 - 135778131  
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        283334 1231 + 190850796  
i calJac3.chr3                     I 1561 C 0
s canFam3.chr16                     41625779 1211 +  59632846  
i canFam3.chr16                    C 0 I 128
e mm10.chr8                         41693477 1116 + 129401213 I
e nomLeu3.chr7b                      1339862    0 - 115148730 I

a score=972931.000000
s hg38.chr4_KI270925v1_alt            318979 427 +    555799 -----------------------------CCA------GATGACTTTGAAGTAGTTTTTCTTATGGT-AAGGTTTTCTCCTAAGTCTGTAGCATAGAATCCTTGTTTTGGGGTTGATCCATGCCTAACCTGAAGATGATAGAATGCAAATTCTGCTTTACATTTGTGTATATAAATATTGCATCAGTCACATGTCCATTTTGGTG-GCAACATCGTCTGTGG--TTTTCTTAGCTGCCCTGGGAT-CAGATTTGCTTAATCATGTTCCCTTTTCTTTCAGGTTGTGCTTGGCTTCTTGCTGC-CCACACCTACTCCATGATTTCGTGCTAA-TTTCTG-CCCTTCTTCTCAGTTAGTGAAAGCTT-CCCCGCACTC-----ATTATCAGCACACTTGAATGTCCACTTAGTGTCAGACGTACAATTTTTAAAGTGAGAATTTCATCCAGGACTTTTACAAAGCCTCTCATGTGGCC
s panTro4.chr4_AACZ03155287_random     16100 428 -     33815 -----------------------------CCA------GATGACTTTGAAGTAGTTTTTCTTATGAT-AAGGTTTTCTCCTAAGTCTGTAGCATAGAATCCTTGTTTTGGGGTTGATCCATGCCTAACCTGAAGATAATAGAATGCAAATTCTGCTTTATATTTGTGTATATAAATATTGCATCAGTCACATGTCCATTTTGGTG-GCAACATCGTCTGTGG--TTTTCTTAGCTGCCCTGGGAT-CGGATTTGCTTAATCATGTTCCCTTTTCTTTCAGGTTGTGCTTGGCTTCTTGCTGC-CCACACCTACTCCATGATTTCATGCTAA-TTTCTG-CCCTTCTTCTCAGTTAGTGAAAGCTTTCCCCGCACTC-----CTTATCAGCACACTTGAATGTCCACTTAGTGTCAGACATACAATTTTTAAAGTGAGAATTTCGTGCAGGACTTTTACAAAGCCTCTCATGTGGCC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198116360 430 + 198332218 -----------------------------CCA------GATGACTTTGAAGTGGTTTTTCTTATGGT-AAGATTTTCTCCTAAGTCTGTAGCATAGAATCCTTGTTTTGGGGTTGATCCATGCCTAACCTGAAGATGATAGAATGC-AATTTTGCTGTATATTTGTGTATATAAATATTGCATCAGTCACATGTCCATTTTGGTG-GCAACATCATCTGTGG--TTTTCTTAGCTGCCCTGGGAT-CGGATTTGCTTAATCAGGTTCCCTTTTCTTTCAGGTTGTGCTTGGCTCCTTGCTGC-CCACACCTACTCCATGATTT-ATGCTAA-TTTCTG-CCCTTCTTCTCAGTTAGTGAAAGCTT-TCCTGCACTCATTTTATTATCAGCACACTTGAATGTCCATTTAGTGTCAGATATACAATTTTTAAAGTGAGAATTTTGTCCAGGACTTTTACAAAGCCTCTCACGTAGCC
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                        357611 428 - 184069350 -----------------------------CCA------GATGACTTTGAAGTAGTTTTCCTTATGGTAAAGGTTTTCTCCTAAGTCTGTAGCATAGAATCCTTGTTTTGGGGTTGATCCATGTCTAACCTGAAGATAATATAATGCAAATTCTGCTCTCTATTTGTGTATATAAATATTGCATCA-------GTCCACTGTGGTGAGCAACATTGTCTGTGG-TTTTTTTTAGCTTTCCTGGGAT-TGGATTTGCTTAACTGTGTTCCCTTGTCTTTCAGGTTGTGCTTGAGTCCTTGCTGC-TGACACTTACTCCACGATTTTATGCTAA-TTTCTG-CCCTTCTTCTCAGTTGGTGAAAGCTT-TCCCACATTCATTTTATTATCAGCCCATTCGAATGTCCATTTAGTGTCAGACATACAATTTTTAAAGTGAGAATTGTGTCCAGCACTTTTATAAAGCCTCTCATGTGGGC
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                        350116 428 - 189454096 -----------------------------CCA------GATGACTTTGAAGTAGTTTTCCTTACGGTAAAGGTTTTCTCCTAAGTCTGTAGCATAGAATCCTTGTTTTGGGGTTGATCCATGTCTAACCTGAAGATAATATAATGCAAATTCTGCTCTCTATTTGTGTATATAAATATTGCATCA-------GTCCACTGTGGTGAGCAACATTGTCTGTGG-TTTTTTTTAGCTTTCCTGGGAT-TGGATTTGCTTAACTGTGTTCCCTTGTCTTTCAGGTTGTGCTTGAGTCCTTGCTGC-TGACACTTACTCCACGATTTTATGCTAA-TTTCTG-CCCTTCTTCTCAGTTGGTGAAAGCTT-TCCCACATTCGTTTTATTATCAGCCCATTCGAATGTCCATTTAGTGTCAGACATACAATTTTTAAAGTGAGAATTGTGTCCAGCACTTTTATAAAGCCTCTCATGTGGGC
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                        252735 425 - 178775436 -----------------------------GCA------GATGACTTTGAAGTAGTTTTCCTTACGGTAAAGGTTTTCTCCTAAGTCTGTAGCATAGAATCCTTGTTTTGGGGTTGATCCATGTCTAACCTGAAGATAATATAATGCAAATTCTg----ctatttgtgtatataaatattgCATCA-------GTCCACTGTGGTGAGCAACAttgtctgtggtttttttttagctttcttgGGAT-TGAATTTGCTTGACCGTGTTCCCTTGTCTTTCAGGTTGTGCTTGAGTCCTTGCTGC-TGACACTTACTCCACGATTTTATGCTAA-TTTCTG-CCCTTCTTCTCAGTTAGTGAAAGCTT-TCccatattcattttattatcagCCCATTCGAATGTCCATTTAGTGTCagacatacaatttttaaagtgaGAATTGTGTCCAGGACTTTTACAAAGCCTCTCATGTGGGC
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        314813 426 - 135778131 -----------------------------CCA------GATGACTTTGAAGTAGTTTTCCTTACGGTAAAGGTTTTCTCCTAAGTCTGTAGCATAGAATTCTTGTTTTGGGGTTGATCCATGCCTAACCTGAAGATAATATAATGCCAATTCTGCTCTCTATTTGTGTATATAAATATTGCATCA-------GTCCACTGTGGTGAGCAACGTTGTCTGTGG-TTTTTTTTAGCTTTCTTGGGAT-TGAATTTGCTTAACTGTGTTCCCTTGTCTTTCAGGTTGTGTTTGAGTCCTTGCTGC-TGACACTTACTCCACGATTTTATGCTAA-TTTCTG-CCCTTCTTCTCAGTTAGTGAAAGCTT-TCCTACATTCATTTTATTATCAGCCCATTCGAATGTCCATTTAGTGTCAGACATACAATTTTTAAAGTGAGAATTGTGTCCAGCACTTTTACAAAGCCTCTC--GTGGGC
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        284565 426 + 190850796 -----------------------------CCA------GATTACTTTGAAGTAGCTTTTTGTATGCT-AAGGTTTTCTTCTAAGTCCGTATCATAGAATTCTTGTTTTGGGGTTGATCCACACCTAACCTGAAGATAACATGATGCAAATTCTGCTTTATGTGTGTGTACATAAATATTGCATTAGTCGCATGTCCATT-TGGTGAGCAGCGTCATATGTGG---TTTTCCAGCTTTCCTGAGAT-GGGATTTGCTTCTTCCTGTTTCCGTTTCTGTCAGGTTGCACTTGGCTCCTTGCTGC-CCACACCTACTCCATGATTTTATGGTAA-TTTCTGCCCCCTCTTCTCCGTGAGCAAAGCCTT-CCCCACTCCT-----ATTACCAGCCCATTTGAATGTCCCCTTAGTGTCCGAC-TGGACATTTTAAAGTGAGAAGTTTGTCCAGAACTTTTATAAAGCCTCTCACGTGGAC
i calJac3.chr3                     C 0 I 301
s canFam3.chr16                     41627118 437 +  59632846 ccagggcagatactcaaccactgagccatccagatgTGGATGACTTTGAAGTGGGTTT-CTTGTAGT-GAAACTTTCTTTGAAGTCTGCATCATAGAATCTTTG-------------CTATGTCTGACCAGGAGAGAAGGT-ACACAGAAACTGC--------------CACACATATCATAGCTGTCATGTGCTCATTTTGCTGAATGATATCATAGATGG--TTTTCTTTGCTTTCCTGGGATACGGTTTTAATTGAT--GCTTGATTTTTCTGTCAGGTTGTGCTTGTCTCCTGGCTGAGTCACACCCACTCAGTGATTTTATTTTAATTTTCTG-CCCTTCTGTTCAGTTGGTGAAAGCTT-TCCCACACCCATTTTATTACCAGCCAATTTGAATGTCCA-TTAGTGTCTGACACTCAATATTTAAA--CAGAATTTTGTTCAGGACTTCTGCACAGCTGCTCATGTAGAC
i canFam3.chr16                    I 128 C 0
e mm10.chr8                         41693477 1116 + 129401213 I
e nomLeu3.chr7b                      1339862   0 - 115148730 I

a score=2401450.000000
s hg38.chr4_KI270925v1_alt            319406 1057 +    555799  
s panTro4.chr4_AACZ03155287_random     16528 1070 -     33815  
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198116790 1076 + 198332218  
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                        358039 1138 - 184069350  
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                        350544 1138 - 189454096  
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                        253160 1087 - 178775436  
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        315239 1086 - 135778131  
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        285292 1075 + 190850796  
i calJac3.chr3                     I 301 C 0
s canFam3.chr16                     41627555  928 +  59632846  
i canFam3.chr16                    C 0 C 0
e mm10.chr8                         41693477 1116 + 129401213 I
e nomLeu3.chr7b                      1339862    0 - 115148730 I

a score=166450.000000
s hg38.chr4_KI270925v1_alt            320463  75 +    555799 aaaactttctacatttaactaccagcaatta------------ca-tttttttgtcgt-------------------------------aaaacaaagggtaagtcaaacaaaacGTCT---
s panTro4.chr4_AACZ03155287_random     17598  74 -     33815 aaaactttctacatttaactaccagcaatta------------ca-tttttt-gtcgt-------------------------------aaaacaaagggtaggtcaaacgaaacgtct---
i panTro4.chr4_AACZ03155287_random C 0 I 1
s ponAbe2.chr4                     198117866  74 + 198332218 aaaactttctacatttaactaccagcaatta------------aa-tttttt-gtcgt-------------------------------aaaacaaagggtaggtcaaacaaaacgtct---
i ponAbe2.chr4                     C 0 I 1
s rheMac3.chr5                        359177  75 - 184069350 aaaactctctaaatttaactaccaacaatta------------aattttttt-gtcgt-------------------------------aaaacaaagcgtaggtcaaacaaatcaTCT---
i rheMac3.chr5                     C 0 I 1
s macFas5.chr5                        351682  75 - 189454096 aaaactctctaaatttaactaccaacaatta------------aattttttt-gtcgt-------------------------------aaaacaaagcgtaggtcaaacaaaTCGTCT---
i macFas5.chr5                     C 0 I 1
s papAnu2.chr5                        254247  74 - 178775436 AAAACTCTCTAAATTTAGCTACCAACAATTA------------AA-TTTTTT-GTCGT-------------------------------AAAACAAAGCGTAGGTCAAACAAATCGTCT---
i papAnu2.chr5                     C 0 I 254
s chlSab2.chr7                        316325  74 - 135778131 aaaactctctaaatttaactaccaacaatta------------aa-tttttt-gtcgt-------------------------------aaaacaaagcgtaggtcaaacaaaTCGTCT---
i chlSab2.chr7                     C 0 I 1
s calJac3.chr3                        286367  77 + 190850796 aaaactttctaaatttaa-tgctggcaatta--------ttatta-ttattt-ttagt-------------------------------aaaacaaagggttcagcaaacaaaacGTCT---
i calJac3.chr3                     C 0 I 1
s mm10.chr8                         41694593  72 + 129401213 AAAACTCTTT--GTTTTACTGCTAGCCATTA------------TT-TATTTT-GATTT-------------------------------TAAACAAGAGGTAGGTCAAATGGATCATGC---
i mm10.chr8                        I 1116 I 3
s canFam3.chr16                     41628483 120 +  59632846 aaaactttctagattaaactgctggcaGttttttgtttgttttta-ttcttt-gtttttgaggcttttttttttttttttctttttGGAAAAGCAGCAAGTAGACCAAACAAAACCTATCTT
i canFam3.chr16                    C 0 C 0
e nomLeu3.chr7b                      1339862   0 - 115148730 I

a score=1055057.000000
s hg38.chr4_KI270925v1_alt            320538 426 +    555799 AAGAGTAAATCTGTCTACAGTGTGTTCAGGAAATGAACACAGGTCAGGTTTATGTGGAAGATATCCAGGGCGTAGCACATCTGCTGGAAGCATTTCAGTCATGAGC-ACAGCTGGGTATTGGCCGTGAACCTGGTGTGCACTGAATACACATCCCCGTGGCCCCTACAGTGCATTCCCTGTGGATAGTTTATTAGGTttcctttattcccttcatctattcttccctttcctttcttccttcctc------------------------------------------------tttttttgcc--------tccctctctctcttcctGTCT----TTATTAAATATATGGGATGCAGATTTGATGAA---TATGTCAATCAAAGATCACCAAGAAGTCTTAAACAGGTAAACCACAGAAAACAGTCAGGATCAGAATAAGAACACT--GTTTAGTGGTTCTCAAGCTTTTTGTTCTCAGAA-CTTCT-TTATA
s panTro4.chr4_AACZ03155287_random     17673 423 -     33815 AAGAGTAAATCTGTCTACAATGTGTTCAGGAAACGAACACAGGTCAGGTTTATGTGGAAGATATCCAGGGCGTAGCACATCTGCTGGAAGCATTTCAGTCATGAGC-ACAGCTGGGTATTGGCCGCGAACCTGGTGTGCACTGAATACACATCCCCGTGGCCCCTACAGTGCATTCCCTGTGGATAGTTTATTAGGtttc-tttattcccttcatctattcttccctttcctttcttccttcctc------------------------------------------------tttttttgcc--------tccctctctctcttcctgtct----ttattAAATATATGGGATGCAGATTTGATGAA---TATGTCCATCAAAGATCACCAAGAAGTCTTAAACAGGTAAACCACAGAAAACAGTCAGGATCAGAATAAGAACA----GTTTAGTGGTTCTCAAGCTTTTTGTTCTCAGAA-CTTCT-TTATA
i panTro4.chr4_AACZ03155287_random I 1 C 0
s ponAbe2.chr4                     198117941 419 + 198332218 AAGAGCAAATCTGTCTACAATGTGTTCAGGAAACAAACACAGGTCAGGTTTATGTGGAAGATATCCAGGGCGTAACACATCTAGTGGAAGCATTTCAGTCATGAGC-ACAGCTAGGTATTGGCCGTGAACCTGGTGTGCACTGAATACACATCCCTGTGGCCCCTACAGTGCATTCCCTGTGGATAGTTCATTAGGTttcctttattcccttcatctattcttccctttcctttcttccttcctc---------------------------------------------------ttttgcc--------tccctctctctcttcctgtct----tTATTAAGTATATGGGATGCAGATTTGATGAA---TATGTCAATCAAAGATCACCAAGACGTCTTAAACAGGTAAACCACAGAAAA----CAGGATCAGAATAAAAACACT--GTTTAGTGGTTCTCAAGCTTTTTGTTCTCACAA-CTTCT-TTATA
i ponAbe2.chr4                     I 1 C 0
s rheMac3.chr5                        359253 428 - 184069350 AAGAGCAAATCTATCT--AGTGTGTTCAGGAAACAACCACAGGTCAGGTTTATGTGGCAGATATCCAGGGCGTAGCACATCTAGTGGAAGCATTTCGGTCATGAGC-ACGGCTGGGCATTGGCCGTGAACCTGGTGGGTACTGAGTACGCATCCCTGTGGCCCCTACAGTGCATTCCCTGTGGATAGTTTATCAGGTttcctttattcccttcatcgattcttccctttcctttcttccttcctc---------------------------------------t--------tttttttccc--------tccctctgtctcttcctgtct----tTATTAAATATATAAGATGCAGATTTGATGAATGTTATGTCAATCAAAGATCACCAAGAAGTCTGAAACAGGCAAACCGCAGAAAACTGTCAGGGTGAGAGTAAGAACATT--GTTTagtggttctcaagctttttgttctcagaa-cttct-ttata
i rheMac3.chr5                     I 1 C 0
s macFas5.chr5                        351758 428 - 189454096 AAGAGCAAATCTATCT--AGTGTGTTCAGGAAACAACCACAGGTCAGGTTTATGTGGCAGATATCCAGGGCGTAGCACATCTAGTGGAAGCATTTCGGTCATGAGC-ACGGCTGGGCATTGGCCGTGAACCTGGTGGGTACTGAGTACGCATCCCTGTGGCCCCTACAGTGCATTCCCTGTGGATAGTTTATCAGGTttcctttattcccttcatcgattcttccctttcctttcttccttcctc---------------------------------------t--------tttttttccc--------tccctctgtctcttcctGTCT----TTATTAAATATATAAGATGCAGATTTGATGAATGTTATGTCAATCAAAGATCACCAAGAAGTCTGAAACAGGCAAACCGCAGAAAACTGTCAGGGTGAGAGTAAGAACATT--GTTTAGTGGTTCTCAAGCTTTTTGTTCTCAGAA-CTTCT-TTATA
i macFas5.chr5                     I 1 C 0
s papAnu2.chr5                        254575 426 - 178775436 aagagcaaatctatCT--AGTGTGTTCAGGAAATGACCACAGGTCAGGTTCATGTGGCAGATATCCAGGGCGTAGCACATCTAGTGGAAGCATTTCGGTCGTGAGC-ACGGCTGGGCATTGGCCGTGAACCTCGTGTGTACTGAGTACGCATCCCTGTGGCCCCGACAGTGCATTCCCTGTGGATAGTTTATCAGGtttcctttattcccttcatcgattcttccctttcctttcttccttcctc------------------------------------------------tttttttccc--------tccctctctctcttcctgtct----ttattaaatatataagatGCAGATTTGATGAATGTTATGTCAATCAAAGATCACCAAGAAGTCTGAAACAGGCAAACCGCAGAAAACGGTCAGGGTCACAGTGAGAACGTT--G-TGAGTGGTTCTCAAGCTTTTTGTTCTCAGAA-CTTCT-TTATA
i papAnu2.chr5                     I 254 C 0
s chlSab2.chr7                        316400 414 - 135778131 AAGAGCAAATCTATCT--AGTGTGTTCAGGAAACGACCACA--------------AGCAGATATCCAGGGCGTAGCACATCTAGTGGAAGCATTTCGGTCGTGAGC-ACGGCTGGGCATTGGCCGTGAACCTGGTGTGTACTGAGTACGCATCCCTGTGGCCCCCACAGTGCATTCCCTGTGGATAGTTCGTCAGGTttcctttattcccttcatcgattcttccctttcctttcttccttcctc---------------------------------------t--------tttttttccc--------tccctctatctcttcctGTCT----TTATTAAATATATAAGATGCAGATTTGATGAATGTTATGTCAATCAAAGATCACCAAGAAGTCTGAAACAGGCAAACCGCAGAAAACGGTCAGGGTCAGAGTAAGAACATT--GTTTagtggttctcaagctttttgttctcagaa-cttct-ttata
i chlSab2.chr7                     I 1 C 0
s calJac3.chr3                        286445 469 + 190850796 AAGGGCAAATCTATCTACAGTGTGTTCAGTAAATGAACACAGGTCGGGTTTATGTGGCAGATATCCAGGGTGTAGCACGTCTAGTTGAAGCATTTCGGTTATGAGC-ACAGCTGGGTATTGTCTGTGAACCTGGAGTGCCCTGAACAGACAACGCTGTGGTCCCTACAGTGCATTCCCCATGGAGAGCTTGTTAGATTTCCTTTATTCAGTTCATCTAGTCTTCATTttccttccttccttccttccttccttccttccttccttccttccttccatccttcctt--------cttttttccc--------tccgtctctctcttcctGTTT----GTGTTAAACATATGGGATGCAGATTTGATGAATGTCATGTCAGTCAAACATCCCCCAGACGTCTTAAACAGGTAAACCACAGAAGACGGTCAGGGTCAGAGTAAGAACATA--ATTTACTggttcgcaagctttttggtctcagaa-cttct-ttaca
i calJac3.chr3                     I 1 C 0
s mm10.chr8                         41694668 367 + 129401213 AAGTATAAGTCTATTC--AAACTTTTCAGTAAGCAA----AGGCCAGTTTCATA----AGGTGCCTTAGGC-TATTCCATCTAGTTGAAACTTTTTAATAGTTAACTACAGCTCACTGGGGATTGCGAAC-----------------------------------ATAGTATACTGCCTATGGACATTTCATTAGAtttccttt----------tcaattgtcccccttccctt-ttcctccctc---------------------------------------t-------atttccttcct--------ttcttttcttccttcctttctGGCCTCATTAAATATAGATGGAGCAGGTT----------TATGTGAATTAAGGTTCACCAAGAAACATTAAGCAAATTAGCCACAGA--ACTCTTAGGGTCAGAGGGAAAATGCT--ATGTGGTGGTTATCAAGATTTCTG-TGTCAATA-CTTCTGGCACA
i mm10.chr8                        I 3 C 0
s canFam3.chr16                     41628603 384 +  59632846 AAAGGCAAATCTATTTACAACATGTTAAGTAAACAAACACATGTTACGTTTATATGTG-------------------------------------------------ACAG-----TATTGACTATGAACCTGATAGGAATTGAATAAATAACTCAGTGGTCCTTTCAGGGCACATTCC-TAAGCAGTTTAGTACATttcctctacttctttaatcta----tctctttcctcttttccttcctc---------------------------------------tttcttttctttttttcccccttttcttccctctctcCCTTGCTGGCC----TTATT-----TATGAGATACAGGTTCCATGAATGT--TGTAACTTAAATATCGCCCAGAAGAATTAAACAGATAAACTGCACAGAACTGACAGGGTCAGAGCAAAGATGTCCAATTcaatggtccccaaactgtttggtctcaggagcttct-ttaca
i canFam3.chr16                    C 0 I 1096
e nomLeu3.chr7b                      1339862   0 - 115148730 I

a score=197081.000000
s hg38.chr4_KI270925v1_alt            320964 102 +    555799 ATCTAAAATGTGTTGCACCCCCTGAAAAGCTTTCACTTTTA-TGGGATAAAAATAAATATTTAT----AAAATATATAG--------TAAAA--AATATAAATATATAAATAAATTT
s panTro4.chr4_AACZ03155287_random     18096 102 -     33815 ATCTAAAATGTGTTGCGCCCCCTGAAAAGCTTTCACTTTTA-TGGGataaaaataaatatttat----aaaatatatag--------taaaa--aatataaatatataaataaattt
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198118360 103 + 198332218 ATCTAAAATGTGTTGCGCCCCCTGAAAAGCTTTCACTTTTA-TGGGATAAaaataaatatttat----aaaatatatag------a-taaaa--aatataaatatataaataaatTT
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                        359681 101 - 184069350 atgtaaaatgtattgtgccccctgaaaagctttcactttta-tgggataaaaataaatatttata---aaaatatatagattaaaattaaaa--aatat----------ataaattt
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                        352186  95 - 189454096 ATGTAAAATGTATTGTGCCCCCTGAAAAGCTTTCACTTTTA-TGGGataaaaataaatatttata---aaaatatatag------attaaaa--aatat----------ataaattt
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                        255001  92 - 178775436 ATCTAAAATGTG-TGTG-CCCCTGAAAAGCTTTCACTTTTa-tgggataaaaataaatatttata---aaaatatatag------a-taaaa--aatat----------ataaattt
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        316814  95 - 135778131 atgtaaaatgtattgtgccccctgaaaagctttcactttta-tgggataaaaataaatatttata---aaaatatatag------attaaaa--aatat----------ataaattt
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        286914 106 + 190850796 atctaaaatgttttgcagaccctgaaaagctttcatttttg-tgggataaaaataaatatttatt---aaaatctatag------a-taaaaataatataaataagtaaataaattt
i calJac3.chr3                     C 0 C 0
s mm10.chr8                         41695035 107 + 129401213 CTGTAAAAAAATTTGAGATGTCTAAAGCACTTTTGTTTTTATTGGGATATAAAGAAATAAATATACTCAGTATATATAT--------TATAT--TATCAAGATTTGAAACTAAACTT
i mm10.chr8                        C 0 I 3441
e canFam3.chr16                     41628987 1096 +  59632846 I
e nomLeu3.chr7b                      1339862   0 - 115148730 I

a score=282903.000000
s hg38.chr4_KI270925v1_alt            321066 139 +    555799 ATG----ATTTGTTTATATAAATATGTATATAAAACCATATTTATCATACTAAGATTTGAAATGGACAAATATTTAAAATATTTATTAGTTAATTTTAAAT---AATTACCAACCTTTCAAATaaataacattttaatgaaaatta
s panTro4.chr4_AACZ03155287_random     18198 135 -     33815 atg----atttgtttatataaatatgtatataaaaccatatttatCATACTAAGATTTGAAATGGACaaatatttaaaatatttatta----attttaaat---aattaCCAACCTTTCAAATAAGTAACattttaatgaaaatta
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198118463 137 + 198332218 ATG----Atttgtttatataaatatgtatataaaa-catatttatcatattaagatttgaaatggacaaatatttaaaatatttatta----attttaaataacaattaccaacctttcaaataaataacattttaatgaaaattt
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                        359782 139 - 184069350 atG----Atttgtttatataaatatgtatataaaa-c--atttatcatattaggatttgaaatggacaaatatttaaaatatttattagttaattttaaataacaattatcaacatttcaaataaataacgttttaatgaaaaTTT
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                        352281 139 - 189454096 atG----Atttgtttatataaatatgtatataaaa-c--atttatcatattaggatttgaaatggacaaatatttaaaatatttattagttaattttaaataacaattatcaacatttcaaataaataacgttttaatgaaaaTTT
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                        255093 133 - 178775436 atg----atttatttgttta------tataaaaca-t--atttatcgtattaGGATTTGAAAtggacaaatatttaaaatatttattagttaattttaaataacaattaccaacatttcaaataaataacgttttaatgaaaattt
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        316909 145 - 135778131 atgatttatttgtttatataaaTATGTATATAAAA-CATATTTATCATATTAAGATTTGAAATGGACAAATATTTAAAATATTTATTGGTTAATTTTAAATAACAATTACCAACATTTCAAATAAATAACGTTTTAATGAAAATTT
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        287020 142 + 190850796 ata----atttgtttatgtaaaaatgtatataaaaacatatttatcatattaGGATTTGAAATGCAGAAATATTTAAAATAGTGATTAGTTAATTTTAAATAACAACTACCAACATTTCAAATAAATAACATTTTAATGAaaattt
i calJac3.chr3                     C 0 C 0
e mm10.chr8                         41695142 3441 + 129401213 I
e canFam3.chr16                     41628987 1096 +  59632846 I
e nomLeu3.chr7b                      1339862   0 - 115148730 I

a score=453195.000000
s hg38.chr4_KI270925v1_alt            321205 253 +    555799 aaaaaaattaaaTTCCgcctggcgcagtggctcatgcctgtaatcccagcactttgagaggccgaggcgggcggatcatttgagttcaggagttcgagaccagcccgaccaacattgtgataccccatctctgctaaaaatccaaaaaaattagctgggtgtggtggcggacacctgtagtcccagctactcgggaggctgaggcaggagaattgcttgaacctgggaggcagaggttgcagtgtgccaagat
s panTro4.chr4_AACZ03155287_random     18333 253 -     33815 aaaaaaattaaattCCgcctggcgcagtggctcatgcctgtaatcccagcactttgagaggccgaggcgggcggatcatttgagttcaggagttcgagaccagcccgaccaacattgtgataccccatctctactaaaaatccgaaaaaattagctgggtgtggtggcatatgcctgtagtcccagctactcgggaggctgaggcaggagaattgcttgaacttgggaggcagaggttgcagtgtgccaagat
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198118600 253 + 198332218 aaaaaaattaaattccgcctggcgcagtggctcacgcctgtaatcccagcactttgagaggccaaggcgggtggatcatttgaggtcaggagttcgagaccagcctgaccaacattgtgataccccatctctactaaaaatacaaaaaaattagctgggtgtggtggcatatgcctgtagtcccagctactcgggaggctgaggcaggagaattgcttggacctgggaggcagaggttgcagtgagccaagat
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                        359921 252 - 184069350 -TAAAAATTAAATTCCgcctggcatggtggctcatgcctgtaatcccagcactttgggaggccaaggcaggtggatcatttgaggtcaggagttcgagacccgcctgaccaacatggtgataccccatctctactaaaaatacaaaaaaattagccgggcgtggtggcacacacctgcagtcccagctacttgggaggctgaggcaggagaattgcttgaacctgggtggcagaggttgcagtgagccaagat
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                        352420 252 - 189454096 -TAAAaattaaattccgcctggcatggtggctcatgcctgtaatcccagcactttgggaggccaaggcaggtggatcatttgaggtcaggagttcgagacccgcctgaccaacatggtgataccccatctctactaaaaatacaaaaaaattagccgggcgtggtggcacacacctgcagtcccagctacttgggaggctgaggcaggagaattgcttgaacctgggtggcagaggttgcagtgagccaagat
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                        255226 252 - 178775436 -taaaaattaaattccgcctggcatggtggctcacgcctgtaatcccagcactttgggaggccaaggtgggtggatcatttgaggtcagaagttcgagaccagcctgaccaacatggtgataccccatctctactaaaaatacaaaaaaaatagccgggcatggtggcgggcacctgcagtcccagctactcgggaggctgaggcaggagaattgcttgaacctgggaggcagaggttgcagtgagccaagat
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        317054 252 - 135778131 -TAAAAATTAAATTCCgcctggcatggtggctcatgcctgtaatcccagcactttggaaggccaaggcaggtggatcatttgaggtcaggagttcgagacccgcctgaccaacatggtgataccccatctctactaaaaatacaaaaaaattagccaggcgtggtgatgggcacctgcagtcccagctactcgggaggctgaggcaggagaattgcttgaacctgggtggcagaggttgcagtgagccaagat
i chlSab2.chr7                     C 0 I 37
e mm10.chr8                         41695142 3441 + 129401213 I
e canFam3.chr16                     41628987 1096 +  59632846 I
e calJac3.chr3                        287162   0 + 190850796 C
e nomLeu3.chr7b                      1339862   0 - 115148730 I

a score=57052.000000
s hg38.chr4_KI270925v1_alt            321458 53 +    555799 ggtgccactgcactccagcctgggagacagagcaagactctgtctc--aaaaaaa
s panTro4.chr4_AACZ03155287_random     18586 53 -     33815 cgagccactgcactccagcctgggagacagagcaagactctgtctc--aaaaaaa
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198118853 53 + 198332218 cgtgccactgcactccagcctgggagacacagcaagactctgtctc--aaaaaaa
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                        360173 52 - 184069350 cgtgccactgcactccagcctggt-gacaaagcaaga--ctgtctcaaaaaaaaa
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                        352672 50 - 189454096 cgtgccactgcactccagcctggt-gacaaagcaaga--ctgtctc--aaaaaaa
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                        255478 52 - 178775436 cgtgccactgcactccagcctggt-gacagagcaagaccctgtctc--aaaaaaa
i papAnu2.chr5                     C 0 C 0
e mm10.chr8                         41695142 3441 + 129401213 I
e canFam3.chr16                     41628987 1096 +  59632846 I
e calJac3.chr3                        287162  0 + 190850796 C
e chlSab2.chr7                        317306 37 - 135778131 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=15063.000000
s hg38.chr4_KI270925v1_alt            321511 25 +    555799 aaaaaaa-----TTAAATTCCAATTTaatt
s panTro4.chr4_AACZ03155287_random     18639 26 -     33815 aaaaaaa----aTTAAATTCCAATTTaatt
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198118906  3 + 198332218 aaa---------------------------
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                        360225 30 - 184069350 aaaaaaaaaaaaTTAAATTCCaatttaatt
i rheMac3.chr5                     C 0 I 16
s macFas5.chr5                        352722 30 - 189454096 aaaaaaaaaaaattaaattccaatttaatt
i macFas5.chr5                     C 0 I 16
s papAnu2.chr5                        255530 18 - 178775436 aa------------aaattccaatttaatt
i papAnu2.chr5                     C 0 I 16
s calJac3.chr3                        287162 25 + 190850796 aaaaaaa-----taaaatttcaatttaatt
i calJac3.chr3                     C 0 C 0
e mm10.chr8                         41695142 3441 + 129401213 I
e canFam3.chr16                     41628987 1096 +  59632846 I
e chlSab2.chr7                        317306 37 - 135778131 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=32030.000000
s hg38.chr4_KI270925v1_alt            321536 20 +    555799 ---------------------tttattttaattta-tttagt
s panTro4.chr4_AACZ03155287_random     18665 20 -     33815 ---------------------tttattttaattta-tttagt
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198118909 20 + 198332218 ----------------------tttttttaacttattttagt
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                        360271 20 - 184069350 ---------------------ttaattttaattta-tttagt
i rheMac3.chr5                     I 16 C 0
s macFas5.chr5                        352768 20 - 189454096 ---------------------ttaattttaattta-tttagt
i macFas5.chr5                     I 16 C 0
s papAnu2.chr5                        255564 20 - 178775436 ---------------------ttaattttaattta-tttagt
i papAnu2.chr5                     I 16 C 0
s chlSab2.chr7                        317343 20 - 135778131 ---------------------ttaattttaactta-tttagt
i chlSab2.chr7                     I 37 C 0
s calJac3.chr3                        287187 41 + 190850796 tttgttttaatttatttaaaattaattttaatgta-tttaat
i calJac3.chr3                     C 0 C 0
e mm10.chr8                         41695142 3441 + 129401213 I
e canFam3.chr16                     41628987 1096 +  59632846 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=876063.000000
s hg38.chr4_KI270925v1_alt            321556 356 +    555799 tctaaaattatatttaattttgt-aatttattttaatcgtat--attaatc--acatttattttaaaaccaaataaatgtgttgagaagagagaaattg-ttttacatttttgcaaatctccttaatgtgtagcttaataaaagataactctactattctgtttctgcatttaatctgttatgaagtcacctatcatgaatcttctggaaaatttcat-gtatatttgtgagagaatgagggtaaaaatggcgaataacatcttagtattattataaaagtcattttggcctcctgttgccactgaaaaagtctcaggatgtcccaggggactttggcccacactttgagaatcAATGTTCAG
s panTro4.chr4_AACZ03155287_random     18685 356 -     33815 tctaaaattatatttaattttgt-aatttattttaattgtat--attaatc--acatttattttaaaaccaaataaatgtgttgagaagagagaaattg-ttttacatttttgcaaatctccttaatgtgtagcttaataaaagataactgtactattctgtttctgcatttaatctgttatgaagtcacctatcatgaatcttctggaaaattccac-gtaaatttgtgagagaatgagggtaaaaatggcgaataacatcttagtattagtataaacgtcgttttggcctcctgttgccactgaaaaagtctcaggatgtcccaggggactttggcccacactttgagaatcAATGTTCAG
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198118929 356 + 198332218 tctaaaattatatataattttgt-aatttattttaattgtat--attaatC--ACATCtattttaaaaccaaataaatgtgttgagaagagagaaattg-ttttacatttttgcaaatctccttaatgtgtagcttaataaaagataactgtactattccgtttctgcatttaatatgtcatgaagtcacctatcatgaatcttctggaaaattccac-gtatatttgtgagagaatgagggtaaaaatggtaaataacatcttagtattattataaaagtcattttggcctcctgttgccactgaaaaagtctcaggatgtcccagaggaccttggcccacactttgagaatcAATGTTCAG
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                        360291 358 - 184069350 tctaaaattatatttaattttgt-aatttattttaattGTAT--ATTAATCTtatatttattttgaaaccaaatgaatgtattgagaggagagaaattg-ttttacatttttgcaaatctccttaatgtgtagcttaataaaagatatctggactattctgtttctgcatttaatctgttatgaagtcacctatcatgaatcttctggaaaattgcat-gtatatttgtgagagaatgaaggtaaaaatggcaaacgacatcataatattattataaaagtcattctggcctcctatagccactgaaaaagtctcaagatgtcccgggggtccttggtccacacttggagaatcgACGTTCAG
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                        352788 358 - 189454096 tctaaaattatatttaattttgt-aatttattttaattgtat--attaatCTtatatttattttgaaaccaaatgaatgtattgagaggagagaaattg-ttttacatttttgcaaatctccttaatgtgtagcttaataaaagatatctggactattctgtttctgcatttaatctgttatgaagtcacctatcatgaatcttctggaaaattgcat-gtatatttgtgagagaatgaaggtaaaaatggcaaacgacatcataatattattataaaagtcattctggcctcctatagccactgaaaaagtctcaagatgtcccgggggtccttggtccacacttggagaatcgACGTTCAG
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                        255584 358 - 178775436 tctaaaattatatttaattttgt-aatttattttaattgtat--attaatcttatatttattttgaaaccaaATGAATGTGTCGAGAGGAGagaaattg-ttttacatttttgcaaatctcctTAATGTGTAGCTTAATAAAAGATATCTGGACTATTCTGTTTCTGCATTTAATCTGTTATGAAGTCACCTATCATGAATCTTCTGGAAAATTGCAC-GTATATTTGTGAGGGAATGAAGGTAAAAATGGCAAACGACAtcataatattattataaaagtcATTCTGGCCTCCTATAGCCACTGAAAAAGTCTCAAGATGTCCCGGGGGTCCTTGGCGCACACTTGGAGAATCGACGTTCAG
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        317363 358 - 135778131 tctaaaattatatttaattttgt-aatttattttaattgtat--attaatcttagatttattttgaaaccaaatgaatgtattgagaggagagaaattg-ttttacgtttttgcaaatctccttaatgtgtagcttaataaaagatatctggactattctgtttctgcatttaatctgttatgaagtcacctatcatgaatcttctggaaaattgcac-gtatatttgtgagagaatgaaggtaaaaatggaaaacgacataataatattattataaaagtcattctggcctcctatagcctctgaaaaagtctcaagatgtcccgggggtccttggtccacacttggagaatcgttgTTCAG
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        287228 359 + 190850796 tctaaaattatatttaattttgtaaatttattttaattttat--attattgttatatttattttaaaagcaaacaaatgtgttgagaagagagaaattg-ttttacgtttttgcaaatcttcttaacgtgtagcttaataaaagatatctggattatcctgtttctgcatttcatctgttatgaagtcacctatcatgaatcttccagaaaattccactgtatgtttgtgagagaatgagggtaaacatggcaaatgacatcttagtattattataaaagtcattttggactcctgcagccactgagaaagtctcgtggtg-ctcggggatccttggcccacactttgagaatcggtgATCAG
i calJac3.chr3                     C 0 C 0
s canFam3.chr16                     41630083 331 +  59632846 tttaaaaaaaattttttttttaG-GGTAAATTTTAGTTATATCAGATAAACTAAAATTTACCCtaaaa------aaatttttttttaa-----aaattgtttttacatttttccatatctcctttatatgtggc-----aatagatgtctggattctcccattttggcatttgatctgttgtgatactcactgtcatcaatc-tctggaaaactttac------tgtgtgaaagaatgagagtaaaaatggcaaatgatttct---tcttattgtataagtagttttgaccttacatcatcactgacagattctcagggtctctgagtgtccct--gCCTGCACATGGAG---CAGTGGTCTA
i canFam3.chr16                    I 1096 C 0
e mm10.chr8                         41695142 3441 + 129401213 I
e nomLeu3.chr7b                      1339862   0 - 115148730 I

a score=1136122.000000
s hg38.chr4_KI270925v1_alt            321912 455 +    555799 GCTCCTTTCTGAGCTGATTATGTAGCTGAGCACGCT----GAACGTCATGTGATTGAGAACCTGCCCCT-TCCAGC-CT---TCATCTCTTCCATTAGCTT-CCCTAAACCATTCAT--TTT------T-----TAGGGCATTAttttctatcaaa-tacaaacaccagtggaagacagaacacatgaagccattagtag--tttaatgccttaatgtgaataaa-ttTAATTCATTTCAATTTGAGAGTCCATGGGGTCACAAAGGAGATGAAAGAGAAAGTACAAGAGCCAGACATAAGGT-TGGAAAGAACCCTGTCCCCAGTGAAAGGCCAATTTTTTC--TTTCACAGCATCGTCTTGGAA--CAACCTGCTT-TCTGGATTCTTAGCTCACAAGTTTGAAAAGGAGCCATTCCCTGATCTATTTTAATTGCTTATCTTCAAAAACTGTCTGAACTACGGTACCCTGTG-GCTACTAC-CTTCCA
s panTro4.chr4_AACZ03155287_random     19041 455 -     33815 GCTCCTTTCTGAGCTGATTATGTAGCTAAGCACGCT----GAACATCATGTGATTGAGAACCTGCCCCT-TCCAGC-CT---TCATCTCTTCCATTAGCTT-CCCTAAACCATTCAT--TTT------T-----TAGGGCATTAttttctatcaaa-tacaaacaccagtggaagagagaacacatgaagccattagtag--tttaatgccttaatgtgaataaa-ttTAATTCATTTCAATTTGAGAGTCCATGGGGTCACAAAGGAGATGAAAGAGAAAGTACAAGAGCCAGACAGAAGGT-TGGAAAGAACCCTGTCCCCAGTGAAAGGCCAATTTTTTC--TTTCACAGCATGGTCTTGGAA--CAACCTGCTT-TCTGGATTCTTAGCTCACAAGTTTGAAAAGGAGCCATTCCCTGATCTATTTTAATTGCTTATCTTCAAAAACTATCTGAACTATGGTACCCTGTG-GCTACTAC-CTTCCA
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198119285 455 + 198332218 GCTCCTTTCTGAGCTGATTATGTAGCTGAGCACGTT----GAACGTCATGTGACTGAGAACCTGCCCCT-TCCAGC-CT---TCATCTCTTCCATTAGCTT-CCCTAAACCATTCAT--TTT------T-----TAGGGCATTATTTTCTATCAAA-TACAAACGCCAGTGGAAGAGAGAACACATCAAACCATTAGTAG--TTTAATGCCTTAATGTGAATAAA-TTTAATTCATTTCAATTTGAGAGTCCATGGGGTCACAAAGGAGATGAAAGAGAAAGTACAAGAGCCAGAAATAAGGT-TGGAAAGAACCCTGTCTCCAATGAAAGGCCAATTTTTTC--TTTCACAGCATGGTCTTGGAA--CAACCTGCTT-TCTGGATTCTTAGCTAACAAGTTTGAAAAGGAGCCATTCCCTGATCTATTTTAATTGCTTATCTTCAAAAACTATCTGAACTACGGTACCCTGTG-GCTACTAC-CTTCCA
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                        360649 433 - 184069350 GCTCCTTTCTGAGCTGATCGCGTAGCTGAGCACGGT----GAACGTCATGTGGTTGAGAACCTGCCCCT-TCCAGC-CT---TCCTCTCTTCCATTAGCTT-CCCTAAACCATTCA---TTT------T-----TACGGCATTATTTTCTGTCaaa-tacaaacaccagtggaagagagaacacgtgaagccattagtag--cttaatgccttaatgtgaacaaa-ttTAATTCATTTCAATTTGAGAGTCCATGGGGTCACAACAGAGATGAAAGAGAAAGTACAAGAGCCAGAAATAAGGT-TGGAAAGACCCCTGTCCCCAGCAAAAGGCCAATTTCTTC------------------TGGA-------TTGCTT-TCTAGATTCTTAGCTCACAACTGTGAAAAGGAGCCATTCCCTCATCTATTTTAATTGCTTATCTTCAAAAACTCTCTGAAATACGGTATCCTGTG-GCTACTAC-CTTCCA
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                        353146 433 - 189454096 GCTCCTTTCTGAGCTGATCGCGTAGCTGAGCACGGT----GAACGTCATGTGGTTGAGAACCTGCCCCT-TCCAGC-CT---TCCTCTCTTCCATTAGCTT-CCCTAAACCATTCA---TTT------T-----TACGGCATTATTTTCTGTCaaa-tacaaacaccagtggaagagagaacacgtgaagccattagtag--cttaatgccttaatgtgaacaaa-ttTAATTCATTTCAATTTGAGAGTCCATGGGGTCACAACAGAGATGAAAGAGAAAGTACAAGAGCCAGAAATAAGGT-TGGAAAGACCCCTGTCCCCAGCAAAAGGCCAATTTCTTC------------------TGGA-------TTGCTT-TCTAGATTCTTAGCTCACAACTGTGAAAAGGAGCCATTCCCTCATCTATTTTAATTGCTTATCTTCAAAAACTCTCTGAAATACGGTATCCTGTG-GCTACTAC-CTTCCA
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                        255942 433 - 178775436 GCTCCTTTCTGAGCTGATCGCGTAGCTGAGCACGGT----GAACGTCATGTGGTTGAGAACCTGCCCCT-TCCAGC-CT---TCCTCTCTTCCATTAGCTT-CCCTAAACCATTCA---TTT------T-----TAGGGCATTATTTTCTGTCAAA-TACAAACACCAGTGGAAGAGAGAACACATGAAGCCGTTAGTAG--CTTAATGCCTTAATGTGAAcaaa-tttaattcatttcaatTTGAGAGTCCATGGGGTCACAACAGAGATGAAAGAGAAAGTACAAGAGCCAGAAATAAGGT-TGGAGAGACCCCTGTCCCCAGCAAAAGGCCAATTTCTTC------------------TGGA-------TTGCTT-TCTGGATTCTTAGCTCACAACTGTGAAAAGGAGCCATTCCCTGATCTATTTTAATTGCTTATCTTCAAAAACTATCTGAACTACAGTATCCTGTG-GCTACTAC-CTTCCA
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        317721 433 - 135778131 GCTCCTTTCTGAGCTGATCATGTAGCTGAGCACGGT----GAACGTCATGTGGTTGAGAACCTGCCCCT-TCCAGC-CT---TCCTCTCTTCCATTAGCTT-CCCTAAACCATTCA---TTT------T-----TAGGGCATTATTTtctatcaaa-tacaaacaccagtggaagagagaacacatgaagccgttagtag--cttaatgccttaatgtgaaccaa-tttAATTCATTTCAATTTGAGAGTCCATGGGGTCACAACAGAGATGAAAGAGAAAGTACAAGAGCCAGAAATAAGGT-TGGAAAGACCCCTGTCCCCAGCAAAAGGCCAATTTCTTC------------------TGGA-------TTGCTT-TCTGGATTCTTAGCTCACAACTGTGAAAAGGAGCCATTCCCTGATCTATTTTAATTGCTTATCTTCAAAAACTATCTGAACTACGGTATCCTGTG-GCTACTAC-CTTCCA
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        287587 442 + 190850796 GCTCCTTTCTGAGCTGATGATGTAGCTGAGCGTGTT----GAGCCTCCTGTGGTTGAGAGCCTGCCCCT-TCCAGC-CT---GTGCCTCTTCCATTAGCTT-CCCTAAACCACTCA----TT------T-----TAGGGCG-TATTTTCTATCAAAGCACAAACACCAGTGGAAGAGAGAACACATCAAGCTGTTAGTAG--CTTAATGCCTTAATGTGAACACG-TTTAACGCATTTCAGTTTGA-----CATGGGATCACAGAGGAGATGAAAGGGAAA-TACAAGAGCCGGAAATAAGGT-TGGAAAGACCCCTGTCCCCAGCTAAAGTCC-ATTTTTGC--TTTCAAGGCATGGTCTTGGAA--CAACCT-CTT-TCTGGAATCTT-GCTCACAGCTTTGAAAAGGAGCCATTCCCTCATCTA-TTTAATTGC-TATCTTCAAAAACTATCTGGACTACGGTACCCTGTG-GCCACGAC-CTTCCA
i calJac3.chr3                     C 0 C 0
s mm10.chr8                         41698583 419 + 129401213 GTTCCTTTCTGAGATAGTCATGCAG--GAACAGATT----TAGCAGCCTGTG--------CACATCTCT-TCCCCA-CTTTCTCTTCTTTCCTACTATATC-AACCAGATAATTCAT--TCTTTTAAGT-----TAAGGCATTAT----TACCAGAGTTCAAATATTAGTTAGAGAGATAACACATTCAGAAAGTAATGG--CTTAATACATTAGTGTGAACAAA---TAATTCATTACAATTGGA------------------AGGAGATGAAAGAAACAAGAGAAGGAGTAGA-ATACATT-TGGATAACCCCCATT--TCAACTAAAGCCTAATTTCTCT-ATTTCACATGATC----TGAAAAGCCACGTGCTTGGAGGGATACTCAGCTCACAGCTACAGAAAGAAGTGGTTCTGTAATTTATGTCAATCACTCATCTTCAGAAGCTGCCTGGA---------CCTGCA-GCCATTAC-TTTCCA
i mm10.chr8                        I 3441 C 0
s canFam3.chr16                     41630414 438 +  59632846 GGTCCCTCCTGATCTAATTCTGTAAGCTAGCCCAGTCAGCAAACCACAGGAGGTTGAGAACCTGCCCTTCTCCAACACT---TCATCTTTTCCATCAACCTGCCCCAAACAATTCATCCTTT------TGAATCTAAGGAATTGT------------tgcaaaaatcagtgggagagaaaacacattaagctgttaacagatatcagttccttagtgTAAACAAAATTGAATTCATTTCAACTGAAGAGTACATGAGAACACAA-------GAAAGAGAAAG-------GCCAGAAATGGACTATGGAAAGGCCCCTTTCCCC------AGGTCAACTTTTTCTATTTCACAGTC------TGGAG--CAGACTTGTT-TCCTGATACTTTGCTCACAGCTATGAAAAGAAGTCAGTCCTCAATCTATTTCAATAGCTTATCCTCAAAAGCTACCTGAA-TACTGTA-CCTGTGTACTTCTGCACATCCA
i canFam3.chr16                    C 0 C 0
e nomLeu3.chr7b                      1339862   0 - 115148730 I

a score=186807.000000
s hg38.chr4_KI270925v1_alt            322367 74 +    555799 ATTTAGGACTCAGGTTTCCAGGAAAAGAAAAGAGTTACAACTACTAA-TAAAAGTCAGTCAAAGTAACTGCTCCT
s panTro4.chr4_AACZ03155287_random     19496 74 -     33815 ATTTAGGACTCAGGTTTCCAGGAAAAGAAAAGAGTTACAACTACTAA-TAAAAGTCAGTCAAAGTAACTGCTCCT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198119740 74 + 198332218 ATTTAGGACTCAGGTTTCCAGGAAAAGAAAAGAGTTACAACTACTAA-TAAAAGTCAGTCAAAGTAACTGCTCCT
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                        361082 74 - 184069350 GTTTAGGACTTAGGGTTCCAGGAAGAGAAAAGAGTTACAACTACTAA-TAAAAGTCCATCAAAGTAACTGCTCCT
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                        353579 74 - 189454096 GTTTAGGACTTAGGGTTCCAGGAAGAGAAAAGAGTTACAACTACTAA-TAAAAGTCCATCAAAGTAACTGCTCCT
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                        256375 74 - 178775436 GTTTAGGACTTAGGGttccaggaagagaaaaaagttacAACTACTAA-TAAAAGTCCATGAAAGTAACTGCTCCT
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        318154 74 - 135778131 GTTTAGGACTTAGGGTTCCACGAAGAGAAAAGAGTTACAACTACTAA-TAAAAGTCCATCAAAGTAACTGCTCCT
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        288029 72 + 190850796 ATTTAGGACTCATGGATCCAGGAAAAG--CAGAGTTACAGCTACTAA-TAAAAGTCGGTCAAAATAACTGCTCCT
i calJac3.chr3                     C 0 C 0
s canFam3.chr16                     41630852 75 +  59632846 GTTTGGGACTCATTGATCCAGGAAATGGGGAAAGTTCCAATTACTAATTAAAAAACAATCAAAACAAAACCCACT
i canFam3.chr16                    C 0 I 113
e mm10.chr8                         41699002  0 + 129401213 C
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=60568.000000
s hg38.chr4_KI270925v1_alt            322441 29 +    555799 CTTT--GAAAGtttcagctcttattttagat
s panTro4.chr4_AACZ03155287_random     19570 29 -     33815 CTTT--GAAAGtttcagctcttattttagat
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198119814 29 + 198332218 CTTT--GAAAGtttcagctcttattttagat
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                        361156 29 - 184069350 TTTT--GAAAGtttcagcatttattttggat
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                        353653 29 - 189454096 TTTT--GAAAGtttcagcatttattttggat
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                        256449 29 - 178775436 TTTT--GAAAGTTTCAGCATTTATTTTGGAT
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        318228 29 - 135778131 TTTT--GAAAGtttcagcatttattttggat
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        288101 31 + 190850796 TTTTAAAAAAACttcagcttttattttagat
i calJac3.chr3                     C 0 C 0
e mm10.chr8                         41699002  0 + 129401213 C
e canFam3.chr16                     41630927 113 +  59632846 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=158448.000000
s hg38.chr4_KI270925v1_alt            322470 93 +    555799 atgggg----gttcacatgcaggtgtgttacatgggt----gtattacacccagctagtgagtatcgtacccctggctagtttttcaatgcatgcccctcc
s panTro4.chr4_AACZ03155287_random     19599 93 -     33815 atgggg----gttcacatgcaggtgtgttacatgggt----gtattacacccagctagtgagtatcgtacccctggctagtttttcaatgcatgcccctcc
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198119843 93 + 198332218 atgggg----gttcacgtgcaggtgtgttacatgggt----gtattacacccagctagcgagtatcatacccctgggtagtttttcaatgcatgccccttc
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                        361185 97 - 184069350 atggga----ttacacatgcaggtgtgttacatggatgggtgtattgcacccagctagtgagtatcatacccctgggtggtttttcaatgcatgcccctcc
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                        353682 97 - 189454096 atggga----ttacacatgcaggtgtgttacatggatgggtgtattgcacccagctagtgagtatcatacccctgggtggtttttcaatgcatgcccctcc
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                        256478 58 - 178775436 GTGGGA----TTACacatgcaggtgtgttacatggAT---------------------------------------GTGGTTTTTCAATGCATGCTCCTCC
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        318257 97 - 135778131 atggga----ttacacatgcaggtgtgttacatggatgggtctattgcacccagctagtgagtatcatacccctgggtggtttttcaatgcatacccctcc
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        288132 96 + 190850796 atgggggcatgtacacgtgcaggtctgttaca-gggt----ctatggcatgtggctggtgagaatcgtatccctgggtggtttttcagtgcatgcccctcc
i calJac3.chr3                     C 0 C 0
s mm10.chr8                         41699002 52 + 129401213 ATGAGC----ATTCAC---------TGATGTGTGGGA------ATCAAAACCAG------------------------------TCAAAACCAGCCTCTTC
i mm10.chr8                        C 0 C 0
e canFam3.chr16                     41630927 113 +  59632846 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=141222.000000
s hg38.chr4_KI270925v1_alt            322563 67 +    555799 cttctttgccccgcgcagtccacagcgcctgttgttcccatgtgtacgtccatgtgtgctcaatgca
s panTro4.chr4_AACZ03155287_random     19692 67 -     33815 cttctttgccccccacagtccacagcgcctgttgttcccatgtgtacgtccatgtgtgctcaatgca
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198119936 67 + 198332218 cttctttgcctcccgcagtccacagtgcctgttgttcccaggtgtacatccatgtgtgctcaatgca
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                        361282 67 - 184069350 cttccttgccccccgcagtgcacagcacctgtggttcccgtgtggacgtccatgtgtgctcaaggca
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                        353779 67 - 189454096 cttccttgccccccgcagtgcacagagcctgtggttcccgtgtggacgtccatgtgtgctcaaggca
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                        256536 67 - 178775436 CTTCCTTGCCCCCCGCAGTGCACAGCGCCTGTGGTTCCCGTGTGGacgtccatgtgtgctcaatgca
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        318354 67 - 135778131 cttccttgccccccgcagtgcacagcgcctgtggttcccatgtggacgtccatgtgtgctcaatgca
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        288228 67 + 190850796 cttctttgcgcccagtagttcacagcatctgctggtcccatgtgtacgtccacatgtgctcagcggg
i calJac3.chr3                     C 0 C 0
e mm10.chr8                         41699054  0 + 129401213 C
e canFam3.chr16                     41630927 113 +  59632846 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=112890.000000
s hg38.chr4_KI270925v1_alt            322630 53 +    555799 tagcttggagctcc--cacctataactgag-aacatgcagtgtGTAAACC--------------------------CCACTA
s panTro4.chr4_AACZ03155287_random     19759 53 -     33815 tagcttggagctcc--cacctataactgag-aacatgcagtgtttAAACC--------------------------CCACTA
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198120003 53 + 198332218 tagcttggagctcc--cacctataactgag-aacatgcagtgtttAAACC--------------------------CCACTA
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                        361349 53 - 184069350 tagcttggagcacc--cagttatgagtggg-aacatgcagtgtttAAACC--------------------------CCACTA
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                        353846 53 - 189454096 tagcttggagcacc--cagttatgagtggg-aacatgcagtgtttAAACC--------------------------CCACTA
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                        256603 53 - 178775436 TAGCTTGGAGCACC--CAgttatgagtggg-aacatgcagtatttaaaCC--------------------------CCACTA
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        318421 53 - 135778131 tagcttggagcacc--cagttatgagtggg-aacatgcagtgtttAAACC--------------------------CCACTA
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        288295 53 + 190850796 tagctcagagctcc--cacttacaagtgag-aacatgcaatctttAAACC--------------------------CCACTA
i calJac3.chr3                     C 0 C 0
s canFam3.chr16                     41631040 82 +  59632846 tatcctggagccccagtatcatgaactgagtcaaaggcagacgcttaaccactgagccacccaggcatcccCAAAACCATTA
i canFam3.chr16                    I 113 C 0
e mm10.chr8                         41699054  0 + 129401213 C
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=126790.000000
s hg38.chr4_KI270925v1_alt            322683 40 +    555799 ATTTCTATGAAAA-AGTATTTCTGTTGATAACCCTGCAGGA
s panTro4.chr4_AACZ03155287_random     19812 40 -     33815 ATTTCTATGAAAA-AGTATTTCTGTTGATAACCCTGCAGGA
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198120056 40 + 198332218 ATTTCTATGAAAA-AGTATTTTTGTTGATAACCCTGCAGGA
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                        361402 40 - 184069350 ATTTCCAGGAAGA-AGTATTTTTGTTGATAACCCTGCAGGA
i rheMac3.chr5                     C 0 I 4703
s macFas5.chr5                        353899 40 - 189454096 ATTTCCAGGAAGA-AGTATTTTTGTTGATAACCCTGCAGGA
i macFas5.chr5                     C 0 I 1
s papAnu2.chr5                        256656 40 - 178775436 ATTTACATGAAGA-AGTATTTTTGTTGATAACCCTGCAGga
i papAnu2.chr5                     C 0 I 1
s chlSab2.chr7                        318474 40 - 135778131 ATTTCCATGAAGA-AGTATTTTTGTTGATAACCCTGCAGGA
i chlSab2.chr7                     C 0 I 2743
s calJac3.chr3                        288348 40 + 190850796 ATTTCTGTGAAAA-AGCACTTTAGTTGGTAACCCTGCAGGA
i calJac3.chr3                     C 0 C 0
s mm10.chr8                         41699054 41 + 129401213 ATTTCTGTGAAAACAGTATTTTTATTGATAGCCATTCTGAA
i mm10.chr8                        C 0 C 0
s canFam3.chr16                     41631122 39 +  59632846 ATTTCTATG-AGA-AGTATTTTTATTGATAACCATTCAGGA
i canFam3.chr16                    C 0 C 0
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=-1959.000000
s hg38.chr4_KI270925v1_alt            322723 2 +    555799 AG
s panTro4.chr4_AACZ03155287_random     19852 2 -     33815 AG
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198120096 2 + 198332218 AG
i ponAbe2.chr4                     C 0 C 0
s macFas5.chr5                        353940 1 - 189454096 A-
i macFas5.chr5                     I 1 I 4660
s papAnu2.chr5                        256697 1 - 178775436 a-
i papAnu2.chr5                     I 1 I 4681
s calJac3.chr3                        288388 2 + 190850796 AG
i calJac3.chr3                     C 0 C 0
s mm10.chr8                         41699095 1 + 129401213 -G
i mm10.chr8                        C 0 I 1
s canFam3.chr16                     41631161 2 +  59632846 AG
i canFam3.chr16                    C 0 C 0
e chlSab2.chr7                        318514 2743 - 135778131 I
e rheMac3.chr5                        361442 4703 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=29453.000000
s hg38.chr4_KI270925v1_alt            322725 19 +    555799 CTCTTTATTA--ATGTCTTCA
s panTro4.chr4_AACZ03155287_random     19854 19 -     33815 CTCTTTATTA--ATGTCTTCA
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198120098 19 + 198332218 CTCTTTATTA--ATGTCTTCA
i ponAbe2.chr4                     C 0 C 0
s macFas5.chr5                        358601 19 - 189454096 cTCTTTATTA--GTGTCTTCA
i macFas5.chr5                     I 4660 I 20
s papAnu2.chr5                        261379 19 - 178775436 CTCTTTATTA--GTGTCTTCA
i papAnu2.chr5                     I 4681 I 20
s calJac3.chr3                        288390 19 + 190850796 CTCCTTATGA--ATGTCTTCA
i calJac3.chr3                     C 0 I 20
s mm10.chr8                         41699097 16 + 129401213 CTCTTCTT-----TCTCTTCA
i mm10.chr8                        I 1 I 11
s canFam3.chr16                     41631163 21 +  59632846 CTCTTTATTACTGTATCTTCC
i canFam3.chr16                    C 0 C 0
e chlSab2.chr7                        318514 2743 - 135778131 I
e rheMac3.chr5                        361442 4703 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=2269458.000000
s hg38.chr4_KI270925v1_alt            322744 871 +    555799  
s panTro4.chr4_AACZ03155287_random     19873 878 -     33815  
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198120117 872 + 198332218  
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                        366145 915 - 184069350  
i rheMac3.chr5                     I 4703 C 0
s macFas5.chr5                        358640 915 - 189454096  
i macFas5.chr5                     I 20 C 0
s papAnu2.chr5                        261418 915 - 178775436  
i papAnu2.chr5                     I 20 C 0
s chlSab2.chr7                        321257 915 - 135778131  
i chlSab2.chr7                     I 2743 C 0
s calJac3.chr3                        288429 931 + 190850796  
i calJac3.chr3                     I 20 I 911
s mm10.chr8                         41699124 844 + 129401213  
i mm10.chr8                        I 11 C 0
s canFam3.chr16                     41631184 910 +  59632846  
i canFam3.chr16                    C 0 C 0
e nomLeu3.chr7b                      1339862   0 - 115148730 I

a score=997213.000000
s hg38.chr4_KI270925v1_alt            323615 451 +    555799 TTTTTATTACACCACAACTTTG-GAAAACATCTCTAAGCCAGGCATATAAGC----CAAGGTTACATAGTATGTCAGGAAAG-GTATAACCATTAAATTATTTAACTGTG--TTTTGTCTATGATTTTTA--AG-AAAAAAATCTATATTTTCTGCGAGTAGTGAGC---AATACTTATCAATTGGTTAGTCACTTGTGTCTGCGAGTTTCATCACCAGCATGATCGGAAAGGTATCTCCCCTCAGCTTCATTTGCAGAGAGGCCTGAGTCGC-----------TCTCAGCCTCCCCCATTTCTGCGCTGCAGCTTCTGGGGAGCCCCTGACACC--ACAGACCCCAGAGCAGCCCCTGCCGACAGCGTGCCTGCTCCGGACAATCCCGAGCTAAGGATCTGTTAGTATTAACCGGGATTTTCTGTCTCGTATAACGCATGGAGCAGTGTTTCTTAAAGAATGAATTTGTGAAGAAAA
s panTro4.chr4_AACZ03155287_random     20751 451 -     33815 TTTTTATTACACCACAACTTTG-GAAAACATCTCTAAGCCAGGCATATAAGC----CAAGGTTACATAGTATGTCAGGAAAG-GTATAACCATTAAATTATTTAACTGTG--TTTTGTCTATGATTTTTA--AG-AAAAAAATCTATATTTTCTGCGAGTAGTGAGC---AATACTTACCAATTGGTTAGTCACTTGTGTCTGCGAGTTTCATCACCAGCGTGATCGGAAAGGTATCTCCCCTCAGCTGCATTTGCAGGGAGGCCTGAGTCGC-----------TCTCAGCCTCCCCCATTTCTGCGCTGCAGCTTCTGGGGAGCCCCTGACACC--ACAGACCCCAGAGCAGCCCCTGCCGACAGCGTGCCTGCTCCAGACAATCCCGAGCTAAGGATCTGTTAGTATTAACCGGGATTTTCTGTCTCGTATAACGCATGGAGCAGTGTTTCTTAAGGAATGAAGTTGTGAAGAAAA
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198120989 452 + 198332218 TTTTTTTTACACCACAACTTTG-GAAAACATCTCTAAGCAAGGCATATAAGC----CAAGGTTACGTAGTACGTCAGGAAAG-GTATAACCATTAAATTAATTAACTGTG--TTTTGTCTATGATTTTTA--AGAAAAAAAATCTATATTTTCTGCGAGTAGTGAGC---AATATTTATCAATTCGTTAGTCGCTTGTGTCTGTGAGTTTCATCACCAGCATGATCGGAAAGGTACCTCCCCTCAGCTTTATTTGCAGGGACGCCTGAGTGGC-----------TCTCAGCCTCCCCCATTTATGCGCTGCAGCTTCTGGGGAGCCCCTGACACC--ACAGACCCCAGAGCAGCCCCTGCCGACAGCGTGCCTACTCCAGACAATCCCGAGCTAAGGATCTGTTAGTATTAACTGGGATTTTCTGTCTGGTATAATGCATGGAGCAGTGTTTCTTAAGGAATGAATTGGTGAAGAAAA
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                        367060 444 - 184069350 TTTTTATTACACCACAACTTTG-GAAAACATCTTTAAGCAAGGAAAATAAGC----CAAGGTTACATAGTATGTCAGGAAAA-GTATAACCATTAAATTATTTAAATGTG--TTTTGTCTATGATATTTT--TT-TAAAAAATCTATATTTTCTGCGAGTAGTGAGC---A------ATCAATTGGTTAGTTACTTGTGGCTGTGAGTTTCCTCACCAGCGTTATTGGAAAGGCATCTCCCCTCAGCTTCATTTGCAGGGAAGCCCGAGTCGC-----------TCTCAGCCGCCCCCACCTCTGCGCGGCAGCTTCTGTGGAGCCCCTGACACC--ACAGACCCCAGAGCAGCCCCTGCCGGCAGCGTGCCTGCCCTGGACAGTCCTGAGCCGAGGATCTGTCAGTA-TAACGGGGATGTTCTGTCTTGTGTAAGGCGTGGAGCAGTGTTTGTTAAGGAATGAATTTGTGAAGAAAA
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                        359555 444 - 189454096 TTTTTATTACACCACAACTTTG-GAAAACATCTTTAAGCAAGGAAAATAAGC----CAAGGTTACATAGTATGTCAGGAAAA-GTATAACCATTAAATTATTTAAATGTG--TTTTGTCTATGATATTTT--TT-TTAAAAATCTATATTTTCTGCGAGTAGTGAGC---A------ATCAATTGGTTAGTTACTTGTGGCTGTGAGTTTCCTCACCAGCGTTATTGGAAAGGCATCTCCCCTCAGCTTCATTTGCAGGGAAGCCCGAGTCGC-----------TCTCAGCCGCCCCCACCTCTGCACGGCAGCTTCTGTGGAGCCCCTGACACC--ACAGACCCCAGAGCAGCCCCTGCCGGCAGCGTGCCTGCCCTGGACAGTCCTGAGCCGAGGATCTGTCAGTA-TAACGGGGATGTTCTGTCTTGTGTAAGGCGTGGAGCAGTGTTTGTTAAGGAATGAATTTGTGAAGAAAA
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                        262333 446 - 178775436 TTTTTATTACACCACAACTTTG-GAAAACATCTTTAAGCAAGGAATATGAGC----CGAGGTTACATAGTACGTCAGGAAAA-GTATAaccattaaattatttaaatgtg--ttttgtctatgatattttaaaa-aaaaaaatctatgttttcTGCGAGTATTGAGC---A------ATCAATTGGTTAGTTACTTGTGGCTGTGAGTTTCCTCACCAGCGTTATTGGAAAGGCATCTCCCCTCAGCTTCATTTGCAGGGAAGCCCGAGTCAC-----------TCTCAGCCGCCCCCATCTCTGCGCGGCAGCTTCTGTGGAGCCCCTGACACC--ACAGACCCCAGAGCAGCCCCTGCCGGCAGCGTGCCTGCCCTGGACAGTCCTGAGCCGAGGATCTGTCAGTA-TAACGGGGATGTTCTGTCTTGTGTAAGGCGTGGAGCAGTGTTTCTTAAGGAATGAATTTGTGAAGAAAA
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        322172 450 - 135778131 TTTTTATTACACCACAACTTTG-GAAAACATCTTTAAGCAAGGAATATAAGC----CAAGGTTACATAGTACGTCAGGAAAA-GTATAACCATTAAATTATTTAAATGTGTTTTTTGTCTATGATATTT---AA-AAAAAAATCTATGTTTTCTGCGAGTAGTGAGC---AATACTTATCAATTGGTTAGTTACTTGTGGCTGTGAGTTTCATCACCAGCGTTATTGGAAAGGCATCTCCCATCAGCTTCATTTGCAGGGAAGCCCGAGTCGC-----------TCTCTGCTGCCCCCACCTCTGTGCAGCAGCTTCTGTGGAGCCCCTGACACC--ACAGACCCCAGAGCAG-CCCTGCCGGCAGCGTGCCTGCCCTGGACAGTCCTGAGCCGAGGATCTGTCAGTA-TAACGGGGATGTTCTGTCTTGTGTAAGGCGTGGAGCAGTGTTTCTTAAGGAATGAATTTGTGAAGAAAA
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        290271 434 + 190850796 TTTTTATTGCACCAGAACTTTG-GAAAGCATCTCTAAGCAAGGAATATAAGC----CAAGGTTACATGGTATGTCCGGAAAG-ATATGACCATTAAATTATGCAACTGTG--TTTTGTCCACGAGTTTT---AA-GACAAAGTCTGTATTTTATGCTGAGAGTGAGC---AGTAGTTACCTATTGGCCTGTCAGTTG----TGTGTGTTTCATCACCAGCTCTGC-----AGGCATTTCCC-TCAGCTTCATTTG-AGGGAAGCCTGATTC--------------CTCAGCCCCCTCCACTCCTGTGCTGCAGCTTCCGCAGAGCCCCTGACACC--ACAGCCCTCGGA-CGGCCTCTGCCGACAGCGCCCCTGCTTTGGACAA-CCTGTGCTAAGGATCTGTTAGTACTAACTGAGATCTTCTGTCTTGTGTAATGCATAGAGCAGTGTTTCTTAAGGAATGAGCTTGTGAAGAAAA
i calJac3.chr3                     I 911 C 0
s mm10.chr8                         41699968 392 + 129401213 ---TTCCTGCA--ATAGTTTTG-GAAAATGT---------------AACAGCCCCTCAAAGATGTATAGTAAATAAGCAAAGCATGTATGCATTAAATCACCTACCTACG--GCTT-----TAAGTTTTA--AG---AAGAATTTA-----TCTGC-ATCAGAGATCCCTAGTACTTATGTATTGGCTTATCACTTATGTATAT-AGTTTCATTTCCA-CATTGCAGGCAAAGCATATCTTCATGGCTTTCTCTTTAGGAAAGGTCACTTTGTTTTTGTTTTAGTTTTACCTTCCTCC--TTTTGCA-------TTCTATAAA--TCTTGTTATC--A----------AACAGCTGCT----ACAGTTTCCCTAATTTGAGTTAGCGAGAAGTAAGGATAAGTTGTTCCTA-----------CCTTCTTATGTGGTATATGGAACA-------TTAAAGAATTTGTTAGTGAAGGCAA
i mm10.chr8                        C 0 I 1313
s canFam3.chr16                     41632094 426 +  59632846 TTTTGATTACAAACTAATTTTGAAAAAATGACTCTTTGCAAGGAATATAAGC----CAAGA-TACATGGC-CATCAGAAAAAAGAATACCTATGAAATCATTTGACTGTG--GTTTGTCTATGATTTTTA--AG-AAAAA-----------TCTACCAACGATAGCA---AATATTTATTAATCGGTTGTGTAAATG---------GTTTCACCACCAGCAGTATAGGTGCGGCATTTCCTCTCAGCTTCATTTTCAGGAAACCCTGATATGC---------TGTATCAGCCTCCTGCTTTCAGATGATGTTTCTTCAGAACAGCCCCTGCCCCCTGATGG---CCAGAGCAGCTGCTTCTGACAGAGTCTCAG-TTTGGACAA-CCCATGCTCAGTACATATCAGAC-TAACAGAGACTTTCTCTCTTATATAAGAAGTAAA--ATTTTCTTTTAAAGGA-GAGTTTCTGAAGAGAA
i canFam3.chr16                    C 0 C 0
e nomLeu3.chr7b                      1339862   0 - 115148730 I

a score=343361.000000
s hg38.chr4_KI270925v1_alt            324066 135 +    555799 TGCACAGCTGCCCCAAACACTGTAGGCACTGAACGAGCACTCATGGCTTCT-CCCTTTGCAGAAATCTCTGTGGACTC--TCCTGTTCGTGGGAGGAGTGCCTTTTTCTGGGGTGCAGTGGCTTCCTCTCCATGCTCA
s panTro4.chr4_AACZ03155287_random     21202 135 -     33815 TGCACAGCTGCCCCAAACACTGTAGGCACTGAACGAGCACTCATGGCTTCT-CTCTTTGCAGAAATCTCTGTGGACTC--TCCTGTTCGTGGGAGGAGTGCCTTTTTCTGGGGTGCAGTGGCTTCCTCTCCATGCTCA
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198121441 134 + 198332218 TGCACAGCTGCCCCAAACACTGTAGGAACTGAACGAGCACTCACGGCTTCTACTCTTTGCAGAAA--TCTGTGGACTC--TCCTGTTCGTGGGAGGAGTGCCTTTTTCTGGGGTGCATTGGCTTCCTCTCCATGCTCA
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                        367504 137 - 184069350 GGCACAGCTGCCCCACACATCGTAGGAACTGAACGAGCACTCGTGGCTTCT-CTCTTTGCAGAAATCTCTGTGGACTCTTTTCCGTTCGTGGGAGCAGTGCCTTTTTCTGGGGTGCAGTGGCTTCCTCTCCATACTCA
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                        359999 137 - 189454096 GGCACAGCTGCCCCACACATCGTAGGAACTGAACGAGCACTCGTGGCTTCT-CTCTTTGCAGAAATCTCTGTGGACTCTTTTCCGTTCGTGGGAGCAGTGCCTTTTTCTGGGGTGCAGTGGCTTCCTCTCCATACTCA
i macFas5.chr5                     C 0 I 7927
s papAnu2.chr5                        262779 137 - 178775436 GGCACAGCTGCCCCACACATGGTAGGAACTGAACGAGCACTCGTGGCTTCT-CTCTTTGCGGAAATCTCTGTGGACTGTTTTCCGTTCGTGGGAGCAGTGCCTTtttctggggtgcagtggcttccTCTCCATGCTCA
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        322622 137 - 135778131 TGCACAGCTGCCCCACACATTGTAGGAATTGAACAAGCACTCGTGGCTTCT-CTCTTTGCAGAAATCTCTGTGGACTCTTTTCCGTTCGTGAGAGGAGTGTCTTTTTCTGGGGTGCAGTGGCTTCCTCTCCATGCTCA
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        290705 135 + 190850796 CGCACAGCTGCCCCAAACATTGTAGGAATTAAACAAGCTCTCATGGCTTCT-CTCTTTGCAGAAATCTC--TGGACTCTTTTCCATTTATGCGAGGAGCGCCTTTTTCTCTGGTGCAGTGACGTCCTCTTCATGCTCA
i calJac3.chr3                     C 0 C 0
s canFam3.chr16                     41632520 137 +  59632846 TGCACAGCTGTCCCAAGCATTTTGGGACTGGAGCAAGCATTCATATATTTT-TCCTTTGCAGAAGTCTCCTTGGACTGCTTCCTGTTAATGGGAAGAGTGTCTTTTGGTCTGATACAGTTCCTGCCTCTTCATGTACA
i canFam3.chr16                    C 0 C 0
e mm10.chr8                         41700360 1313 + 129401213 I
e nomLeu3.chr7b                      1339862   0 - 115148730 I

a score=465081.000000
s hg38.chr4_KI270925v1_alt            324201 275 +    555799 CCTCGCACACTCCCGGCTCTGCCTCTGCCCTCGGGCCAC--------------CGGTCCCCCAGTCGTGCCACG-TCCCTGCTGCCTGAGGGGATGCTTGCACGGCTCCCTCTGCCGGGACTTTCCACCTAGATGCTCGGCCTTGACCCCTCACTCACATACCCTTTTCCTCATAACTCTTTCCTGACTCTCGACACCATCCTACACTCACAGAGTACTGCACGCCTTTCTGACATAGCCGTGTGTCGGTGTGCTGTGTGAAGTGTTTT--TGTGTATATGACTACTTGCAT
s panTro4.chr4_AACZ03155287_random     21337 277 -     33815 CCTCGCAAACTCCCGGCTCTGCCTCTGCCCTCGGGCCAC--------------CGGTCCCCCAGTCGTGCCACG-TCCCTGCTGCCTGAGGGGATGCTTGCACGGCTCCCTCTGCCGGGACTTTCCACCTATATGCTCGGCCTTGACCCCTCACTCACATACCCTTTTCTTCACAACTCTTTCCTGACTCTCGACACCATCCTACACTCACAGAGTACTGCACACCTTTCTGACATAGCCGTGTGTCAGTGTGCTGTGTGATGTGTTTTCATGTGTATATGACTATTTGCGT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198121575 271 + 198332218 CCTCGCACACTTCCGGCTCTGCCTCTGCCCTCTGGCCAC--------------CGGTCCCCCAATCGTGCCACA-TCCCTGCTGCCTGAGGGGATGCTTGCACGGCTCCCACTGCCGGGACTTTCCACCTATATGCTCGGCCTTGACCCCTCACTCACATACCCTTTTCTCCACAATTCTTTCCTGACTCTAGACACCATCCTACACTCACAGAGTACTGCATGCCTTTCTGACACAGCCGTGTGTCAGGGTTCTGTGTGAAGTGTTTT--TGTGTAT----CTATTTGCGT
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                        367641 275 - 184069350 CCTCGCACACTCCCTGCTGTGCCTCTGCTCTCCAGTCAC--------------TGGTCCCCGAGTCATGCCACG-TCCCTGCTGCCTGAGGGGATGCGTGCATGGCTCCCTCTGCCAGGACTGTCTACCTATGTGTTTGGCCTTGACCCCTCACTCACATACCCTTTTCTCCACAATTCTTTCCTGACTCTCCACACCGTGCTACACTCATAGAGTACCGCATGCCTTTCTGACATAGCCGTGTGTCCGTGTGCTATGGGAAGTGTTTT--GGTGTATATGACTATTTGCAT
i rheMac3.chr5                     C 0 C 0
s papAnu2.chr5                        262916 275 - 178775436 CCTCGCACACTCCCCGCTGTGCCTCTGCTCTCCAGTCAC--------------TGGTCCCCAAGTCATGCCACG-TCCCTGCTGCCTGAGGGGACGCGGGCATGGCTCCCTCTGCCAGGACTGTCTACCTCTGTGCTTGGCCTTGACCCCTCACTCACatacccttttctccacaactctTTCCTGACTCCCCATACCGCGCTACACTCATAGAGCACCGCATGCCTTTCTGACATAGCCGTGTGTCCGTGTGCTGAGGGAGGTGTTTC--GGTGTATATGACTATTTCCAT
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        322759 274 - 135778131 CCTCGCACACTCCCCGCTGTGCCTCTGCTCTCCAGTCAC--------------TGGTCCCCGAGTCATGCCACG-TCCCTGCTGCCTGAGGGGACGCGTGCATGGCTCCCTCTGCCAGGACTGTCTGCCTCTGTGCTTGGCCTTGACCCCTCACTCACATG-CCTTTTCTCCACAATGCTTTCCGGACTCTCCACACCATGCTACACTCATAGAGTACCGCATGCCTTTCTGACATAGCCGTGTGTCTGTGTGCTGTGTGAAGTGTTTT--GGTGTATATGAGTATTTGCAT
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        290840 272 + 190850796 CCTCGCACACTGTTCTCTCTGCCTCTGCCCTCTGGACAC--------------CAGTCCTCCAGCCATGCTCCA-TCCCTGCTGCCTCAGGGGATGCTTGCATGGTTTCCTCTGCGAGGACTCTCTGCCTCTGTGTTCGGTCTTGACCCCCCACTCACATGCCCTTTTCTCCACAATTCCTTCCTGTCTCTCCACACTGTCCTGTCCTCACAGAGTACTGCATGGCTTTCTGACAG---CATGTGTCCGTGTGCTGTGGGAGGTGTTTT--TGTCTATATGACTGTTTGCAT
i calJac3.chr3                     C 0 C 0
s canFam3.chr16                     41632657 284 +  59632846 -----GAGATGTGCATCTTCATCTTTGCCTtccagccacattggttcttttttagatctatctatcatggggtattccctccagcctcaggggatgctgatagtgttccctctgccatgaatttctagc-atctactcaaacttgacctcttgctcatcagttcttttctccagaatccttcccttactctctaaactttgctgtattcctgtagtactctgttccctcttgacacaggtacatctcagcatgctatattatgtgtttt--agttgatgtaattatttgtgt
i canFam3.chr16                    C 0 I 299
e mm10.chr8                         41700360 1313 + 129401213 I
e macFas5.chr5                        360136 7927 - 189454096 I
e nomLeu3.chr7b                      1339862   0 - 115148730 I

a score=15417.000000
s hg38.chr4_KI270925v1_alt            324476 11 +    555799 GTTACAGCAGT
s panTro4.chr4_AACZ03155287_random     21614 11 -     33815 GTTACAGCAGT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198121846  9 + 198332218 GTTACAGCA--
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                        367916 11 - 184069350 GTTACAGCACT
i rheMac3.chr5                     C 0 C 0
s papAnu2.chr5                        263191 11 - 178775436 GTTACAGCAGT
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        323033 11 - 135778131 GTTACAGCGGT
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        291112 11 + 190850796 GTTATAGCAGT
i calJac3.chr3                     C 0 I 409
e mm10.chr8                         41700360 1313 + 129401213 I
e canFam3.chr16                     41632941 299 +  59632846 I
e macFas5.chr5                        360136 7927 - 189454096 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=36161.000000
s hg38.chr4_KI270925v1_alt            324487 27 +    555799 GTGTCAGTGTGCTGTGTGAAGTGTTT-T
s panTro4.chr4_AACZ03155287_random     21625 25 -     33815 GTGTCAGTGTGC--TGTGAAGTGTTT-T
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198121855 27 + 198332218 GTGTCAGTGTGCTGTGTGAAGTGTTT-T
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                        367927 26 - 184069350 GTGTCAGTGTGCTGTGTGAAGTGTTT--
i rheMac3.chr5                     C 0 I 1
s papAnu2.chr5                        263202 27 - 178775436 GTGTCCGTGTGCTGTGTGAAGTGTTTT-
i papAnu2.chr5                     C 0 T 27
s chlSab2.chr7                        323044 26 - 135778131 GTGTCTGTGTGCTGTGTGAAGTGTTT--
i chlSab2.chr7                     C 0 I 1
s calJac3.chr3                        291532 27 + 190850796 GTGTCCGTGTGCTGTGGGAGGTGTTT-T
i calJac3.chr3                     I 409 C 0
e mm10.chr8                         41700360 1313 + 129401213 I
e canFam3.chr16                     41632941 299 +  59632846 I
e macFas5.chr5                        360136 7927 - 189454096 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=29.000000
s hg38.chr4_KI270925v1_alt            324514 1 +    555799 C
s panTro4.chr4_AACZ03155287_random     21650 1 -     33815 T
i panTro4.chr4_AACZ03155287_random C 0 C 0
s calJac3.chr3                        291559 1 + 190850796 T
i calJac3.chr3                     C 0 C 0
e mm10.chr8                         41700360 1313 + 129401213 I
e canFam3.chr16                     41632941 299 +  59632846 I
e chlSab2.chr7                        323070 1 - 135778131 I
e papAnu2.chr5                        263229 27 - 178775436 T
e macFas5.chr5                        360136 7927 - 189454096 I
e rheMac3.chr5                        367953 1 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e ponAbe2.chr4                     198121882 0 + 198332218 C

a score=7850.000000
s hg38.chr4_KI270925v1_alt            324515 6 +    555799 GTGTAT
s panTro4.chr4_AACZ03155287_random     21651 6 -     33815 GTGTAT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198121882 6 + 198332218 GTGTAT
i ponAbe2.chr4                     C 0 I 4
s rheMac3.chr5                        367954 6 - 184069350 GTGTAT
i rheMac3.chr5                     I 1 I 4
s chlSab2.chr7                        323071 6 - 135778131 GTGTAT
i chlSab2.chr7                     I 1 I 15
s calJac3.chr3                        291560 6 + 190850796 GTGTAC
i calJac3.chr3                     C 0 T 443
e mm10.chr8                         41700360 1313 + 129401213 I
e canFam3.chr16                     41632941 299 +  59632846 I
e papAnu2.chr5                        263229 27 - 178775436 T
e macFas5.chr5                        360136 7927 - 189454096 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=2956.000000
s hg38.chr4_KI270925v1_alt            324521 8 +    555799 CTATCTAC
s panTro4.chr4_AACZ03155287_random     21657 8 -     33815 CTATTTAC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198121892 8 + 198332218 CTATTTGC
i ponAbe2.chr4                     I 4 C 0
s rheMac3.chr5                        367964 8 - 184069350 GTATTTGC
i rheMac3.chr5                     I 4 C 0
e mm10.chr8                         41700360 1313 + 129401213 I
e canFam3.chr16                     41632941 299 +  59632846 I
e calJac3.chr3                        291566 443 + 190850796 T
e chlSab2.chr7                        323077 15 - 135778131 I
e papAnu2.chr5                        263229 27 - 178775436 T
e macFas5.chr5                        360136 7927 - 189454096 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=5953.000000
s hg38.chr4_KI270925v1_alt            324529 10 +    555799 GTGTAATAGC
s panTro4.chr4_AACZ03155287_random     21665 10 -     33815 GTGTAATAGC
i panTro4.chr4_AACZ03155287_random C 0 I 3
s ponAbe2.chr4                     198121900 10 + 198332218 GTGTTATAGC
i ponAbe2.chr4                     C 0 I 3
s rheMac3.chr5                        367972 10 - 184069350 GTGTTACAGC
i rheMac3.chr5                     C 0 I 3
s chlSab2.chr7                        323092 10 - 135778131 GTACAGCAGC
i chlSab2.chr7                     I 15 C 0
e mm10.chr8                         41700360 1313 + 129401213 I
e canFam3.chr16                     41632941 299 +  59632846 I
e calJac3.chr3                        291566 443 + 190850796 T
e papAnu2.chr5                        263229 27 - 178775436 T
e macFas5.chr5                        360136 7927 - 189454096 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=112773.000000
s hg38.chr4_KI270925v1_alt            324539 85 +    555799 GTGTCAGTGTGCTGTGTGAAGTGTTTTTGTGTATATGACTATT----TGTTATAGCAGCGTGTCAGTGTGCTGTGTGAAGTGTTTTCAC-
s panTro4.chr4_AACZ03155287_random     21678 85 -     33815 GTGTCAGTGTGCTGTGTGAAGTGTTTTCATG----TGACTATTTGCATGTTACAGCAGTGTGTCAGTGTGCTGTGTGAAGTGTTTTCAT-
i panTro4.chr4_AACZ03155287_random I 3 C 0
s ponAbe2.chr4                     198121913 87 + 198332218 CGGTCAGTGTGCTGTGTGAAGTGTTTTCATGTATGTGACTATTTGAGTGTTATAGCAGTGTGTCAGTGTGCTGTGTGAAGTGTTTGC---
i ponAbe2.chr4                     I 3 T 118
s rheMac3.chr5                        367985 86 - 184069350 GTGTCCGTGTGCTGTGTGAAGTG-TTTGGTGTATATGAGTATTTGCATGTTACAGCGGTGTGTCCGTGTGCTGTGTGAAGTGTTTTG---
i rheMac3.chr5                     I 3 C 0
s papAnu2.chr5                        263202 87 - 178775436 GTGTCCGTGTGCTGTGTGAAGTGTTTTGGTGTATATGAGTATTTCCATGTTACAGCAGTGTGTCTGTGTGCTGTGTGAAGTGTTTTG---
i papAnu2.chr5                     T 27 C 0
s chlSab2.chr7                        323102 87 - 135778131 GTGTCCATGTGCTGTGGGAAGTGTTTCGGTGTATATGAGTATTTCCATGGTACAGCAGCGTGTCCGTGTGCTGTGTGAAGTGTTTTG---
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        291123 88 + 190850796 GTGTCCGTGTGCTGTGCGAGGTGTTTTTCTGTATATGACTGTTTGCATGTTATAGCAGTGTGTCCCTGTGCTGTGGGAGTTGTGTTC--A
i calJac3.chr3                     T 443 C 0
e mm10.chr8                         41700360 1313 + 129401213 I
e canFam3.chr16                     41632941 299 +  59632846 I
e macFas5.chr5                        360136 7927 - 189454096 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=79896.000000
s hg38.chr4_KI270925v1_alt            324624 58 +    555799 GTGTATATGACTATTTGCGTGTTATAGCCATGTGTCGCTGTGCTGTGTGAAGTGTTTT
s panTro4.chr4_AACZ03155287_random     21763 58 -     33815 GTGTATATGACTATTTGCGTGTCATAGCAGTGTGTCTGTGTGTTGTGTGAAGTGTTTT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198121882 58 + 198332218 GTGTATGTGACTATTTGCGTGTTATAGCCATCGGTCAGTGTGCTGTGTGAAGTGTTTT
i ponAbe2.chr4                     T 118 C 0
s rheMac3.chr5                        368071 58 - 184069350 GTGTATATGACTATTTCCATGTTACAGCGGTGTGTCCGTGTGCTGTGTGAAGTGTTTT
i rheMac3.chr5                     C 0 C 0
s papAnu2.chr5                        263289 58 - 178775436 GTGTATTTGACTATTTGCGTGTTACAGCAGTGTGTCCGTGTGCTGTGTGAAGTGTTTT
i papAnu2.chr5                     C 0 T 118
s chlSab2.chr7                        323189 57 - 135778131 GTGTGTATGAGTGTTTGCATGTTACAGCAGTGTGTCCGTGTGCTGTGTGAAGTGTTT-
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        291211 55 + 190850796 -TGTACGTCAATATTTGCATGTTAGAGCCGTGTGTC--TGTGCTGTGGGAGGTGTTTC
i calJac3.chr3                     C 0 C 0
e mm10.chr8                         41700360 1313 + 129401213 I
e canFam3.chr16                     41632941 299 +  59632846 I
e macFas5.chr5                        360136 7927 - 189454096 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=-3580.000000
s hg38.chr4_KI270925v1_alt            324682 2 +    555799 --CA
s panTro4.chr4_AACZ03155287_random     21821 1 -     33815 --G-
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198121940 1 + 198332218 --C-
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                        368129 1 - 184069350 --G-
i rheMac3.chr5                     C 0 C 0
s calJac3.chr3                        291266 2 + 190850796 CA--
i calJac3.chr3                     C 0 C 0
e mm10.chr8                         41700360 1313 + 129401213 I
e canFam3.chr16                     41632941 299 +  59632846 I
e chlSab2.chr7                        323246 0 - 135778131 C
e papAnu2.chr5                        263347 118 - 178775436 T
e macFas5.chr5                        360136 7927 - 189454096 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=228824.000000
s hg38.chr4_KI270925v1_alt            324684 183 +    555799 TGTGTATATGACTATTTGCATGTTATAGCAGCGTGTCAGTGTGCTGTGTGAAGTGTTTTCATGTGTATATGATTATTTGCATGTTATAGCAGGGTGTCAGGGTGCTGTGTGAAGTGTTTTCATGTGTATATGACTATTTGCATGTTATAGCAGGGTGTCAGTGTGCTGTGTGAAGTGTTTTC-A
s panTro4.chr4_AACZ03155287_random     21822 178 -     33815 -GTGTATGTGACTATTTGCATGTTAGAGCAGTGTGTCAGGGTGCTGTGTGAAGTGTTTTCATGTG--TATGACTATTTGCATGTTATAGCAGCGTGTCAGTGTGCTGTGTGAAGTGTTTTC--GTGTATATGACTATTTGCGTGTTATAGCAGTGTGTCAGTGTGCTGTGTGACGTGTTTTC-A
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198121941 173 + 198332218 -ATGTATGTGACTATTTGAGTGTTATAGCAGTGTGTCAGTGTGCTGTGTGAAGTGTTTGCGTGTA--TATGACTATTTGCATGTTATAGCCGTGTGTCAGTGTGCCGTGTGAAGTATTTTG--GTGTATGTGACTATTTGCATGTTACAGTAGTGTGTCAGTGTACTGT-----GTGTTTTC-G
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                        368130 174 - 184069350 -GTGTATTTGACTATTTGCATGTTACAGCGGTGTGTCCGTGTGCTGTGTGAAGTG-TTTGGTGTA--TATGAGTATTTGCGTGTTACAGCGGTGTGTCTGTGTGCTGTGTGAAGTGTTTTG--GTGTATATGACTATTTCCATGTTACAGCA--GTGTCCGTGTGCTGAGGGAGGTGTTTTG--
i rheMac3.chr5                     C 0 C 0
s papAnu2.chr5                        263229 179 - 178775436 GGTGTATATGAGTATTTCCATGTTACAGCAGTGTGTCTGTGTGCTGTGTGAAGTGTTTTGGTGTA--TTTGACTATTTGCGTGTTACAGCAGTGTGTCCGTGTGCTGTGTGAAGTGTTTTG--GTGTATATGAGTATTTCCATGTTACAGCGGTGTGTCCATGTGCTGAGGGACATGTTTTCA-
i papAnu2.chr5                     T 118 I 116
s chlSab2.chr7                        323246 176 - 135778131 GGTGTATATGAGTATTTCCATGTTACAGCAGTGTGTCCGTGTGCTGTGTGAAGTG-TTT-GTGTA--TATGAGTATTTCCACGTTACAGCAGTGTGTCCCTGTGCTGTGTGAAGTGTTGTG--GTGTATATGAGTATTTCCATGGTACAGCAGTGTGTCCGTGTGCTGTGTGAAGTGTTTTG--
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        291268 175 + 190850796 --TGTACGTGACTATTTACATGTTATAGCCGTGTGTCAGTGTGCTGTGGGAGGTGTTTCCGTGTA--CATGACTGTTTGCATGTTAGAGCCGTGTGTC--TGTGCTGTGGGAGGTGTTTCC--ATGTACGTGACTATTTACATGTTATAGCAGTGTGTCCGTGTGCTATGGGAGGTGTTTCC-A
i calJac3.chr3                     C 0 C 0
e mm10.chr8                         41700360 1313 + 129401213 I
e canFam3.chr16                     41632941 299 +  59632846 I
e macFas5.chr5                        360136 7927 - 189454096 I
e nomLeu3.chr7b                      1339862   0 - 115148730 I

a score=69700.000000
s hg38.chr4_KI270925v1_alt            324867 63 +    555799 TGTGTATATGACTATTTGCATGTCATAGCAGGGTGTCAGGGTGCTGTGTGAAGTATTTTCATG
s panTro4.chr4_AACZ03155287_random     22000 55 -     33815 TGTGTATGTGACTATTTGCATGTTACAGCAGTGTGTCAGTGTGCTGTGTG-----TTT---TG
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198122114 55 + 198332218 TGTAT------CTATTTGCCTGTTATAGCAGTGTGTCAGTGTGCTGTGTGAAGTGTTTT--CA
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                        368304 59 - 184069350 -GTGTATATGAGTATTTGCATGTTACAGCGGTGTGTCCGTGTGCTGTGTGAAGTGTTT---TG
i rheMac3.chr5                     C 0 I 1
s papAnu2.chr5                        263524 60 - 178775436 GGTGTATATGAGTGTTTCCATGTTACAGCGATGTATCCGTGTGCTGTGTGAAGTGTTT---TG
i papAnu2.chr5                     I 116 T 176
s chlSab2.chr7                        323422 59 - 135778131 -GTGTATTTGACTATTTGCATGTTACAGCCGTGTGTCCGTGTGCTGTGTGAAGTGTTT---TG
i chlSab2.chr7                     C 0 I 1
s calJac3.chr3                        291443 59 + 190850796 --TGTACATCACAATTTGCATGTTATAGCAGTGTGTCTGTGTGCTGTGGGAGGTGTTTC--TG
i calJac3.chr3                     C 0 C 0
e mm10.chr8                         41700360 1313 + 129401213 I
e canFam3.chr16                     41632941 299 +  59632846 I
e macFas5.chr5                        360136 7927 - 189454096 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=69068.000000
s hg38.chr4_KI270925v1_alt            324930 44 +    555799 TGTATATGACTATTTGCATGTTACAGCAGTGTGTCAGTGTGCTG
s panTro4.chr4_AACZ03155287_random     22055 42 -     33815 TGTATGTGACTATTTGCATGTTCCAGCAGTGTGTCAGTGTGC--
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198122169 44 + 198332218 TGTATGTGACTATTTGCATGTTACAGAAGTGTGTCAGTGTGCTG
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                        368364 44 - 184069350 TGTATTTGACTATTTGCGTGTTACAGCAGTGTGTCAGTGTGCTG
i rheMac3.chr5                     I 1 I 15
s papAnu2.chr5                        263408 44 - 178775436 TGTATATGAGTATTTCCATGTTACAGCAGTGTGTCAGTGTGCTG
i papAnu2.chr5                     T 176 C 0
s chlSab2.chr7                        323482 44 - 135778131 TGTATATGAGTATTTGCATGTTACAGCCGTGTGTCCGTGTGCTG
i chlSab2.chr7                     I 1 C 0
s calJac3.chr3                        291502 44 + 190850796 TGTACATGACTATTTACATGTTATAGCAGTGTGTCCGTGTGCTG
i calJac3.chr3                     C 0 C 0
e mm10.chr8                         41700360 1313 + 129401213 I
e canFam3.chr16                     41632941 299 +  59632846 I
e macFas5.chr5                        360136 7927 - 189454096 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=14617.000000
s hg38.chr4_KI270925v1_alt            324974 13 +    555799 TGTGAAGTGTTTT
s panTro4.chr4_AACZ03155287_random     22097 13 -     33815 TGTGAAGTGTTTT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198122213 13 + 198332218 TGTGAAGTGTTTT
i ponAbe2.chr4                     C 0 C 0
s papAnu2.chr5                        263452 13 - 178775436 AGGGAGGTGTTTT
i papAnu2.chr5                     C 0 I 236
s chlSab2.chr7                        323526 13 - 135778131 TGTGAAGTGTTTT
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        291546 13 + 190850796 TGGGAGGTGTTTT
i calJac3.chr3                     C 0 C 0
e mm10.chr8                         41700360 1313 + 129401213 I
e canFam3.chr16                     41632941 299 +  59632846 I
e macFas5.chr5                        360136 7927 - 189454096 I
e rheMac3.chr5                        368408 15 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=-789.000000
s hg38.chr4_KI270925v1_alt            324987 1 +    555799 C
s panTro4.chr4_AACZ03155287_random     22110 1 -     33815 T
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198122226 1 + 198332218 C
i ponAbe2.chr4                     C 0 C 0
s papAnu2.chr5                        263701 1 - 178775436 G
i papAnu2.chr5                     I 236 C 0
s chlSab2.chr7                        323539 1 - 135778131 G
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        291559 1 + 190850796 T
i calJac3.chr3                     C 0 T 118
e mm10.chr8                         41700360 1313 + 129401213 I
e canFam3.chr16                     41632941 299 +  59632846 I
e macFas5.chr5                        360136 7927 - 189454096 I
e rheMac3.chr5                        368408 15 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=5152.000000
s hg38.chr4_KI270925v1_alt            324988 6 +    555799 GTGTAT
s panTro4.chr4_AACZ03155287_random     22111 6 -     33815 GTGTAT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198122227 6 + 198332218 GTGTAT
i ponAbe2.chr4                     C 0 T 125
s papAnu2.chr5                        263702 6 - 178775436 GTGTAT
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        323540 6 - 135778131 GTGTGT
i chlSab2.chr7                     C 0 I 25
e mm10.chr8                         41700360 1313 + 129401213 I
e canFam3.chr16                     41632941 299 +  59632846 I
e calJac3.chr3                        291560 118 + 190850796 T
e macFas5.chr5                        360136 7927 - 189454096 I
e rheMac3.chr5                        368408 15 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=759.000000
s hg38.chr4_KI270925v1_alt            324994 18 +    555799 CTATCTACGTGTAATAGC
s panTro4.chr4_AACZ03155287_random     22117 18 -     33815 CTATTTACGTGTAATAGC
i panTro4.chr4_AACZ03155287_random C 0 I 3
s papAnu2.chr5                        263708 12 - 178775436 GTGACTCCATGT------
i papAnu2.chr5                     C 0 C 0
e mm10.chr8                         41700360 1313 + 129401213 I
e canFam3.chr16                     41632941 299 +  59632846 I
e calJac3.chr3                        291560 118 + 190850796 T
e chlSab2.chr7                        323546 25 - 135778131 I
e macFas5.chr5                        360136 7927 - 189454096 I
e rheMac3.chr5                        368408 15 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I
e ponAbe2.chr4                     198122233 125 + 198332218 T

a score=4208.000000
s hg38.chr4_KI270925v1_alt            325012 27 +    555799 GTGTCAGTGTGCTGTGTGAA-------GTGTTTT
s panTro4.chr4_AACZ03155287_random     22138 20 -     33815 GTGTCAGTGTGCTGTGTGAA--------------
i panTro4.chr4_AACZ03155287_random I 3 C 0
s papAnu2.chr5                        263720 33 - 178775436 -TTTCTGTGCACTAGATGGGGTGCAGAGTGTTTT
i papAnu2.chr5                     C 0 T 524
s chlSab2.chr7                        323571 27 - 135778131 GTGTCCGTGTGCTGAGGGAG-------GTGTTTT
i chlSab2.chr7                     I 25 C 0
e mm10.chr8                         41700360 1313 + 129401213 I
e canFam3.chr16                     41632941 299 +  59632846 I
e calJac3.chr3                        291560 118 + 190850796 T
e macFas5.chr5                        360136 7927 - 189454096 I
e rheMac3.chr5                        368408 15 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I
e ponAbe2.chr4                     198122233 125 + 198332218 T

a score=-128.000000
s hg38.chr4_KI270925v1_alt            325039 1 +    555799 T
s papAnu2.chr5                        263229 1 - 178775436 G
i papAnu2.chr5                     T 524 C 0
s chlSab2.chr7                        323598 1 - 135778131 G
i chlSab2.chr7                     C 0 C 0
e mm10.chr8                         41700360 1313 + 129401213 I
e canFam3.chr16                     41632941 299 +  59632846 I
e calJac3.chr3                        291560 118 + 190850796 T
e macFas5.chr5                        360136 7927 - 189454096 I
e rheMac3.chr5                        368408 15 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e ponAbe2.chr4                     198122233 125 + 198332218 T
e panTro4.chr4_AACZ03155287_random     22158 0 -     33815 C

a score=-547.000000
s hg38.chr4_KI270925v1_alt            325040 45 +    555799 GTGTATATGACTA----TTTGTTATAGCAGCGTGTCAGTGTGCTGTGTG-----
s panTro4.chr4_AACZ03155287_random     22158  3 -     33815 ----------------------------------------------GTG-----
i panTro4.chr4_AACZ03155287_random C 0 C 0
s papAnu2.chr5                        263230 49 - 178775436 GTGTATATGAGTATTTCCATGTTACAGCAGTGTGTCTGTGTGCTGTGTG-----
i papAnu2.chr5                     C 0 I 186
s chlSab2.chr7                        323599 13 - 135778131 GTGTATATGAGTG-----------------------------------------
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        291442 54 + 190850796 ATGTACATCACAATTTGCATGTTATAGCAGTGTGTCTGTGTGCTGTGGGAGGTG
i calJac3.chr3                     T 118 C 0
e mm10.chr8                         41700360 1313 + 129401213 I
e canFam3.chr16                     41632941 299 +  59632846 I
e macFas5.chr5                        360136 7927 - 189454096 I
e rheMac3.chr5                        368408 15 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I
e ponAbe2.chr4                     198122233 125 + 198332218 T

a score=1705.000000
s hg38.chr4_KI270925v1_alt            325085 4 +    555799 TTTT
s panTro4.chr4_AACZ03155287_random     22161 4 -     33815 TTTT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s chlSab2.chr7                        323612 4 - 135778131 TTTC
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        291496 4 + 190850796 TTTC
i calJac3.chr3                     C 0 T 174
e mm10.chr8                         41700360 1313 + 129401213 I
e canFam3.chr16                     41632941 299 +  59632846 I
e papAnu2.chr5                        263279 186 - 178775436 I
e macFas5.chr5                        360136 7927 - 189454096 I
e rheMac3.chr5                        368408 15 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e ponAbe2.chr4                     198122233 125 + 198332218 T

a score=573.000000
s hg38.chr4_KI270925v1_alt            325089 2 +    555799 CA
s panTro4.chr4_AACZ03155287_random     22165 2 -     33815 CA
i panTro4.chr4_AACZ03155287_random C 0 C 0
s chlSab2.chr7                        323616 2 - 135778131 CA
i chlSab2.chr7                     C 0 C 0
e mm10.chr8                         41700360 1313 + 129401213 I
e canFam3.chr16                     41632941 299 +  59632846 I
e calJac3.chr3                        291500 174 + 190850796 T
e papAnu2.chr5                        263279 186 - 178775436 I
e macFas5.chr5                        360136 7927 - 189454096 I
e rheMac3.chr5                        368408 15 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e ponAbe2.chr4                     198122233 125 + 198332218 T

a score=-137.000000
s hg38.chr4_KI270925v1_alt            325091 1 +    555799 T
s panTro4.chr4_AACZ03155287_random     22167 1 -     33815 T
i panTro4.chr4_AACZ03155287_random C 0 C 0
s papAnu2.chr5                        263465 1 - 178775436 G
i papAnu2.chr5                     I 186 C 0
e mm10.chr8                         41700360 1313 + 129401213 I
e canFam3.chr16                     41632941 299 +  59632846 I
e calJac3.chr3                        291500 174 + 190850796 T
e chlSab2.chr7                        323618 0 - 135778131 C
e macFas5.chr5                        360136 7927 - 189454096 I
e rheMac3.chr5                        368408 15 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e ponAbe2.chr4                     198122233 125 + 198332218 T

a score=24676.000000
s hg38.chr4_KI270925v1_alt            325092 54 +    555799 GTGTATATGACTATTTGCGTGTTATAGCCATGTGTCGCTGTGCTGTGTGAAGTG
s panTro4.chr4_AACZ03155287_random     22168 48 -     33815 G------TGACTATTTCCATGTTACAGCAGTGTGTCAGTGTGCTGTGTGAAGTG
i panTro4.chr4_AACZ03155287_random C 0 C 0
s papAnu2.chr5                        263466 54 - 178775436 GTGTATATGAGTATTTCCATGTTACAGCTGTGTGTCCGTGTGCTGAGGGAGGTG
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        323618 35 - 135778131 -------------------CGTTACAGCGGTGTGTCCGTGTGCTGTGTGAAGTG
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        291326 52 + 190850796 GTGTACATGACTGTTTGCATGTTAGAGCCGTGTGTC--TGTGCTGTGGGAGGTG
i calJac3.chr3                     T 174 C 0
e mm10.chr8                         41700360 1313 + 129401213 I
e canFam3.chr16                     41632941 299 +  59632846 I
e macFas5.chr5                        360136 7927 - 189454096 I
e rheMac3.chr5                        368408 15 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I
e ponAbe2.chr4                     198122233 125 + 198332218 T

a score=53561.000000
s hg38.chr4_KI270925v1_alt            325146 69 +    555799 TTTTCATGTGTATATGACTGTTTGCATGTTATAGCAGGGTGTCAGGGTGCTGTGTGAAGTGTTTTCATG--
s panTro4.chr4_AACZ03155287_random     22216 65 -     33815 TTTTCA--TGTATCTGAGTATTTGCATGTTATAGTAGTATGTCAGTGTGCTGTGTGAAGTATTTTC--G--
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198122108 61 + 198332218 TTTTCG--TGTATC----TATTTGCCTGTTATAGCAGTGTGTCAGTGTGCTGTGTGAAGTGTTTTC--A--
i ponAbe2.chr4                     T 125 C 0
s papAnu2.chr5                        263520 65 - 178775436 TTTTGG--TGTATATGAGTGTTTCCATGTTACAGCGATGTATCCGTGTGCTGTGTGAAGTGTTTTG--G--
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        323653 65 - 135778131 TTTTGG--TGTATATGAGTATTTGCATGTTACAGCGGTGTGTCCGTGTGCTGTGTGAAGAGTTTTG--G--
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        291378 67 + 190850796 TTTCCA--TGTACGTGACTATTTACATGTTATAGCAGTGTGTCCGTGTGCTATGGGAGGTGTTTCC--ATG
i calJac3.chr3                     C 0 C 0
e mm10.chr8                         41700360 1313 + 129401213 I
e canFam3.chr16                     41632941 299 +  59632846 I
e macFas5.chr5                        360136 7927 - 189454096 I
e rheMac3.chr5                        368408 15 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=76088.000000
s hg38.chr4_KI270925v1_alt            325215 57 +    555799 TGTATATGACTATTTGCATGTTACAGCAGTGTGTCAGTCTGCTGTGTGAAGTGTTTT-
s panTro4.chr4_AACZ03155287_random     22281 53 -     33815 TGTGTATGAC----TGCATGTTACAGCAGTGTGTCAGTCTGCTGTGTGAAGTGTTTT-
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198122169 57 + 198332218 TGTATGTGACTATTTGCATGTTACAGAAGTGTGTCAGTGTGCTGTGTGAAGTGTTTT-
i ponAbe2.chr4                     C 0 I 7
s rheMac3.chr5                        368423 57 - 184069350 TGTATATGAGTATTTCCATGTTACAGCTGTGTGTCAGTGTGCTGAGGGAGGTGTTTT-
i rheMac3.chr5                     I 15 C 0
s papAnu2.chr5                        263585 57 - 178775436 TGTATATGAGTATTTCCATGTTACAGCAGTGTGTCCGTGTGCTGAGGGAGGTGTTTT-
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        323718 57 - 135778131 TGTATATGAGTATTTCCATGGTACAGCAGTGTGTCCGTGTGCTGTGTGAAGAGTTTT-
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        291445 56 + 190850796 --TACATCACAATTTGCATGTTATAGCAGTGTGTCTGTGTGCTGTGGGAGGTGTTTCT
i calJac3.chr3                     C 0 C 0
e mm10.chr8                         41700360 1313 + 129401213 I
e canFam3.chr16                     41632941 299 +  59632846 I
e macFas5.chr5                        360136 7927 - 189454096 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=1500.000000
s hg38.chr4_KI270925v1_alt            325272 1 +    555799 G
s panTro4.chr4_AACZ03155287_random     22334 1 -     33815 G
i panTro4.chr4_AACZ03155287_random C 0 C 0
s rheMac3.chr5                        368480 1 - 184069350 G
i rheMac3.chr5                     C 0 T 526
s papAnu2.chr5                        263642 1 - 178775436 G
i papAnu2.chr5                     C 0 I 1
s chlSab2.chr7                        323775 1 - 135778131 G
i chlSab2.chr7                     C 0 I 1
s calJac3.chr3                        291501 1 + 190850796 G
i calJac3.chr3                     C 0 C 0
e mm10.chr8                         41700360 1313 + 129401213 I
e canFam3.chr16                     41632941 299 +  59632846 I
e macFas5.chr5                        360136 7927 - 189454096 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e ponAbe2.chr4                     198122226 7 + 198332218 I

a score=9257.000000
s hg38.chr4_KI270925v1_alt            325273 9 +    555799 TTTATGTGA
s panTro4.chr4_AACZ03155287_random     22335 9 -     33815 TTTATGTGA
i panTro4.chr4_AACZ03155287_random C 0 C 0
s rheMac3.chr5                        367955 9 - 184069350 TGTATATGA
i rheMac3.chr5                     T 526 C 0
s papAnu2.chr5                        263644 9 - 178775436 TGTATATGA
i papAnu2.chr5                     I 1 C 0
s chlSab2.chr7                        323777 9 - 135778131 TGTATATGA
i chlSab2.chr7                     I 1 C 0
s calJac3.chr3                        291502 9 + 190850796 TGTACATGA
i calJac3.chr3                     C 0 C 0
e mm10.chr8                         41700360 1313 + 129401213 I
e canFam3.chr16                     41632941 299 +  59632846 I
e macFas5.chr5                        360136 7927 - 189454096 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e ponAbe2.chr4                     198122226 7 + 198332218 I

a score=29680.000000
s hg38.chr4_KI270925v1_alt            325282 25 +    555799 CTATTTGCATGTTACAGCAGTGT----CT
s panTro4.chr4_AACZ03155287_random     22344 25 -     33815 CTATTTGCATGTTACAGCAGTGT----GT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198122233 29 + 198332218 CTATTTGCATGCTATAGCAGTATGTCAGT
i ponAbe2.chr4                     I 7 C 0
s rheMac3.chr5                        367964 29 - 184069350 GTATTTGCGTGTTACAGCAGTGTGTCCGT
i rheMac3.chr5                     C 0 C 0
s papAnu2.chr5                        263653 29 - 178775436 GTGTTTCCATGGTACAGCCGTGTGTCCGT
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        323786 29 - 135778131 GTATTTCCATGTTACAGCAGTGTGTCCGT
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        291511 25 + 190850796 CTATTTACATGTTATAGCAGTGTGT----
i calJac3.chr3                     C 0 I 24
e mm10.chr8                         41700360 1313 + 129401213 I
e canFam3.chr16                     41632941 299 +  59632846 I
e macFas5.chr5                        360136 7927 - 189454096 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=1500.000000
s hg38.chr4_KI270925v1_alt            325307 1 +    555799 G
s panTro4.chr4_AACZ03155287_random     22369 1 -     33815 G
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198122262 1 + 198332218 G
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                        367993 1 - 184069350 G
i rheMac3.chr5                     C 0 C 0
s papAnu2.chr5                        263682 1 - 178775436 G
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        323815 1 - 135778131 G
i chlSab2.chr7                     C 0 C 0
e mm10.chr8                         41700360 1313 + 129401213 I
e canFam3.chr16                     41632941 299 +  59632846 I
e calJac3.chr3                        291536 24 + 190850796 I
e macFas5.chr5                        360136 7927 - 189454096 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=20480.000000
s hg38.chr4_KI270925v1_alt            325308 19 +    555799 TGTTGTGTGAAGTGTTTTG
s panTro4.chr4_AACZ03155287_random     22370 19 -     33815 TGTTGTGTGAAGTGTTTTG
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198122263 19 + 198332218 TGCTGAGGGAGGTGTTTTA
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                        367994 18 - 184069350 TGCTGTGTGAAGTGTTT-G
i rheMac3.chr5                     C 0 C 0
s papAnu2.chr5                        263683 19 - 178775436 TGCTGAGGGACGTGTTTCG
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        323816 19 - 135778131 TGCTGAGGGACGTGTTTTG
i chlSab2.chr7                     C 0 C 0
s canFam3.chr16                     41633240 19 +  59632846 tgctatattatgtgtttta
i canFam3.chr16                    I 299 C 0
e mm10.chr8                         41700360 1313 + 129401213 I
e calJac3.chr3                        291536 24 + 190850796 I
e macFas5.chr5                        360136 7927 - 189454096 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=25129.000000
s hg38.chr4_KI270925v1_alt            325327 17 +    555799 GTGTATATGACTATTTG
s panTro4.chr4_AACZ03155287_random     22389 17 -     33815 GTGTATATGACTATTTG
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198122282 17 + 198332218 GTGTATGtgactatttg
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                        368012 17 - 184069350 GTGTATATGAGTATTTG
i rheMac3.chr5                     C 0 I 524
s papAnu2.chr5                        263702 13 - 178775436 GTGTATGTGACTC----
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        323835 17 - 135778131 GTGTACGTGACTCTTTC
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        291560 17 + 190850796 GTGTACGTGACTATTTG
i calJac3.chr3                     I 24 C 0
s canFam3.chr16                     41633259 17 +  59632846 gttgatgtaattatttg
i canFam3.chr16                    C 0 C 0
e mm10.chr8                         41700360 1313 + 129401213 I
e macFas5.chr5                        360136 7927 - 189454096 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=213321.000000
s hg38.chr4_KI270925v1_alt            325344 119 +    555799 ---CATGTTTTCTGCACACTAGATGgagtgcagagtgtgttgcctgtttttct--------------------------------------------------------------cc---accgctccatcctcagtgcctgctacggtgttggacacacagtaggggttcagtaaatgctaatgaa
s panTro4.chr4_AACZ03155287_random     22406 119 -     33815 ---CATGTTTTCTGCACACTAGATGgagtgcagagtgtgttgcctgtttttct--------------------------------------------------------------cc---accgctccatcctcagtgtctgctacggtgttggacacacagtaggggttcagtaaatgctaatgaa
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198122299 119 + 198332218 ---catgttttctgcacactagatggagtgcagagtgttttgcctgtttttct--------------------------------------------------------------ct---accactccatcctcagtgcctgctacagtgttggacacacagtaggagttcagtaaatgctaatgaa
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                        368553 119 - 184069350 ---CATGTTTTCTGTGCACTAGatggggtgcagagtgttttgcctgtctttct--------------------------------------------------------------cc---agcgcttcatcctcagtgcctgctacagtgttggacacacagtaggagttcagtaaatgctaatgaa
i rheMac3.chr5                     I 524 C 0
s papAnu2.chr5                        263715 119 - 178775436 ---CATGTTTTCTGTGCACTAGATGGGGTGCAGAGTGTTTTGCCTGTCTTTCT--------------------------------------------------------------CC---AGCGCTTCGTCCTCAGTGCCTGCTACAGTGTTGGACACACAGTGGGAGTTCAGTAAATGCTAATGAA
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        323852 119 - 135778131 ---CATGTTTTctgtgcactagatggggtgcagagtgttttacctgtctttct--------------------------------------------------------------cc---agcgcttcgtcctcagtgcctgctacagtgttggacacacagtaggagttcagtaaatgctaatgaa
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        291577 122 + 190850796 ---CATGTTTTCTGCACACTGGACAGAGTGCAACGTCTTCAGCCtattttttt--------------------------------------------------------------ttttggctgctccatcctcattgcctgctacagtgtcagacacatagtaggtgttcaataaatgctaatgaa
i calJac3.chr3                     C 0 C 0
s canFam3.chr16                     41633276 181 +  59632846 tgtagtgtttcctgcccactagactgagagcaggtcttccttccttccttccttccttccttccttccttccttccttccttccttccttccttccttccttccttccttccttccc---attgcttcatcctcagggtctgccatggtgtctgacata---tgggctttcagtaaataccaattca
i canFam3.chr16                    C 0 C 0
e mm10.chr8                         41700360 1313 + 129401213 I
e macFas5.chr5                        360136 7927 - 189454096 I
e nomLeu3.chr7b                      1339862   0 - 115148730 I

a score=141763.000000
s hg38.chr4_KI270925v1_alt            325463 66 +    555799 CAGTCGATTAAATGAGCAAA--AACCTTTATTGAATACCTACCATGTTCCAGACATGGCTAACTgatg
s panTro4.chr4_AACZ03155287_random     22525 66 -     33815 CAGTTGATTAAATGAGCAAA--AACCTTTATTGAACACCTACCACGTTCCAGACATGGCTAACTGATG
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198122418 66 + 198332218 CAGTTGATTAAATGAGCAAA--AACCTTTATTCAATACCTACCATGTTCCAGACATGGCTAACTGATG
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                        368672 66 - 184069350 CAGTTGACTAAATGGGTGAA--AACCTTTATGGAATACCTACCATGCTCCAGACACGGCTAACCGATG
i rheMac3.chr5                     C 0 C 0
s papAnu2.chr5                        263834 66 - 178775436 CAGTTGACTAAATGGGCGAA--AACCTTTATGGAATACCTACCATGCTCCAGGCATGGCTAACCGATG
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        323971 66 - 135778131 cagttgactaaatgaGCAAA--AACCTTTATGGAATACCTGCCATGCTCCAGACATGGCTAACTGATG
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        291699 66 + 190850796 CAGTTGATCATATAGGCAAA--AACCTTTATTAAATACCCAGCATATTCCAGACATGGCTTACTGATG
i calJac3.chr3                     C 0 C 0
s mm10.chr8                         41701673 64 + 129401213 caatcaatcaaacaaacaaA--Aa--tatagtgaacacctattgtgttccagacctcagtaactgatg
i mm10.chr8                        I 1313 C 0
s canFam3.chr16                     41633457 67 +  59632846 ttaatgattgaatGAGCAAATGAGCTTTTATTGAATGCCTCCAAGTTTCCAGACAT-GCTAAGTGATG
i canFam3.chr16                    C 0 C 0
e macFas5.chr5                        360136 7927 - 189454096 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=14026.000000
s hg38.chr4_KI270925v1_alt            325529 19 +    555799 agaatttaccaattacatg
s panTro4.chr4_AACZ03155287_random     22591 19 -     33815 AGAATTTACCAATTACATG
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198122484 19 + 198332218 AGAATTTACCAATTACATG
i ponAbe2.chr4                     C 0 C 0
s calJac3.chr3                        291765 19 + 190850796 AGAATATACCGATTACATG
i calJac3.chr3                     C 0 C 0
s mm10.chr8                         41701737 18 + 129401213 -tggcaaaccaatgagatg
i mm10.chr8                        C 0 C 0
s canFam3.chr16                     41633524 19 +  59632846 AGAATATATCAACAGGATG
i canFam3.chr16                    C 0 C 0
e chlSab2.chr7                        324037  0 - 135778131 C
e papAnu2.chr5                        263900  0 - 178775436 C
e macFas5.chr5                        360136 7927 - 189454096 I
e rheMac3.chr5                        368738  0 - 184069350 C
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=52679.000000
s hg38.chr4_KI270925v1_alt            325548 105 +    555799 cttgctgccttcagggagctcgacctcacaAGACAGACCGTCACGTA--GAGACAACTGCTACACAACATGGGAAGAACTGCTATAGAGATGTAAAGATGTAAAGAC
s panTro4.chr4_AACZ03155287_random     22610 103 -     33815 CTTGCTGCTTTCAGGGAGCTCGACCTCACAAGACAGACCGTCACGTA--GAGACAACTGCTACACAACATGGGAAGAACTGC--TAGAGATGTAAAGATGTAAAGAC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198122503  97 + 198332218 CTTGCTGCCTTCGGAGAGCTCGACCTCACAAGACAGACCGTCATGTA--GAGACAACTGCTACACAACATGGGAAGAACTGC--------CATAGAGATGTAAAGAC
i ponAbe2.chr4                     C 0 C 0
s calJac3.chr3                        291784  97 + 190850796 CTGCTTGCCTTCCGGAAGCTTGGTCTCACAAGACAGACAGTCATGCA--GAGACAACTGCTACACAACATGGGAAGACCTGC--------TGTAGAGATGTAAAGAC
i calJac3.chr3                     C 0 C 0
s mm10.chr8                         41701755 104 + 129401213 tatcct-ctgtcaaggagctcaatattgcagta-agatagtcatataaggagatgacag-taCAAAACATGGGAAGACCTGACACAGAGATGTTATGTTATGCAGAC
i mm10.chr8                        C 0 I 1284
e canFam3.chr16                     41633543   0 +  59632846 C
e chlSab2.chr7                        324037   0 - 135778131 C
e papAnu2.chr5                        263900   0 - 178775436 C
e macFas5.chr5                        360136 7927 - 189454096 I
e rheMac3.chr5                        368738   0 - 184069350 C
e nomLeu3.chr7b                      1339862   0 - 115148730 I

a score=200774.000000
s hg38.chr4_KI270925v1_alt            325653 477 +    555799 CCAAAATGAAGAAGCCAGAACACAT--------------GAACACGAAACCAGCCAACCAACAAACACAAGCAGCATGGAGCATAGAGTCTGGGGACCAACTG-CAGGGTGCTGAGGAATGCAGGTGGAGGCAGagtggaaatcacctgagtttccatcaggcagagttgcgcttgaatttgagttctggcatttgctgagcctctctgattctg----tcttctgtaaaataggagtaataatatttatttatatctaccgtacaggcaattgtgagatttacttaagacaTActtt----gtccatttttctgttgcttataacagaatacctgaaactaggtgacttatttttaaaaagctaatttctt-agagttatgaaggctcagaaatccaaggatgggggtctgcagctggtgagggccttcttgctgatgggaaatcagaaaagccctaaggtggttcagagaaccacatggcaagggggccgagaatgcta
s panTro4.chr4_AACZ03155287_random     22713 477 -     33815 CCAAAATGAAGAAGCCAGAACACAT--------------GAACACG-----AGCCAACCAACAAACACAAGCAGCATGGAGCATAGAGTCTGGGGACCAACTG-CAGGGTGCTGAGGAATGCAGGTGGAGGCAGagtggaaatcacctgagtttccatcaggcagaattgcgcttgaatttgagttctggcacttgctgagcctctctgattctg----tcttctgtaaaataggagtaataatatgtatttatatctactgtacaggcaattgtgagatttacctaagacaTACtgtcttagtccatttttctgttgcttataacagaatacctgaaactaggtgacttatttttaaaaagcttatttcttaagagttatgaaggctgagaagtccaaggatgggggtctgcagctggtgagggccttcttgctgatgggaaatcagaagagccctaaggtggttcagagcaccacatggcgagggggccaagaatgcta
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198122600 484 + 198332218 CCAAAATGAAGAAGCTGGAACACAT--------------GAACACGAAACCAGCCGACCAACAAACACAAGCAGCATGGAGCATAGAGTCTGGGGACCGACTG-CAGGGTGCTGAGGAATGCAGGTGgaggcagagtggaaatcacctgagtttccatcaggtagagctgagcttgaatttgagttctggcacttgctgagcctctctgattctgtctttcttctgtaaaatgggagtaataacatttatttatacctactgtacagggaattgtgagatttacttaagacaTACtgtcttagttca-ctttctgttgcttataacagaatacctgaaactaagtgacttatttttaaaaagcttatttctt-aaagttatgaaggctgagaagtccaaggttggggggctgcagctggtgaaggccttcttgctggtgggaaatcggaagatccctaaggtggttcagagcaccacatggtgagggggctgaggatgcta
i ponAbe2.chr4                     C 0 C 0
s calJac3.chr3                        291881 484 + 190850796 CCAAAATGAAGAAGCCAAAACACATCCAACCAACAAACAAAACAGGAAACCGAGCAACCAACAAACAAGAGCAGAATGGAACATACAGCCTGGAgagacactgccggggcactgaggagcgcaggtggagatggggtgagaacaaccagatcctggatcaggcagatctgagcttgaatttgagttctggcacttgctaagcctctctgattctgtctctcttctgtaaaatgtgaataataatatttatttatacatactgtacagggAATGGTGAGATTTACTTAAGACATACTATTTTAGTA-----------tgcttataatagaatacctgaaactaggtaacttatttttaaaaagcttatttctt-acagttatgaaggctgagaagtccaaagg-gaggggctgcagctggtgagggca-tcttgctggtgggaaatctgagagcccatgtg--ggtgcagagtaccacgtagtga-ggggctgagcatgcta
i calJac3.chr3                     C 0 I 959
e mm10.chr8                         41701859 1284 + 129401213 I
e canFam3.chr16                     41633543   0 +  59632846 C
e chlSab2.chr7                        324037   0 - 135778131 C
e papAnu2.chr5                        263900   0 - 178775436 C
e macFas5.chr5                        360136 7927 - 189454096 I
e rheMac3.chr5                        368738   0 - 184069350 C
e nomLeu3.chr7b                      1339862   0 - 115148730 I

a score=41817.000000
s hg38.chr4_KI270925v1_alt            326130 180 +    555799 gcgtgttagctcagatctctcttcttcttataaggccac---cagttcctctcccatgataacccagttatccattaacccattagttctttaatccaggagtagattg----attcataaggggataacccctgtgatccaatcaccacttaaaggatg-cccctctcaatactcccatatcgggga
s panTro4.chr4_AACZ03155287_random     23190 181 -     33815 gcgtgttagctcagatctctcttcttcttataagggcac---tagttcctctcccatgataacccatttagccattaacccattagttgtttaatccatgagtagattg----attcataaggggataacccctgtgatccaatcaccacttaaaggatgccccctctcaatactcccatatcgggga
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198123084 187 + 198332218 gcatgctagctcaggtctctcttcctcttataaagccaccagcagttcctctcccatgataaccaactgatgcattaacccattagtcctttaatccatgagtagattgattcattcataaggacataacccttgtgatccaatcaccacttaaaggatg-cccctctcaatactcccatatcgagga
i ponAbe2.chr4                     C 0 I 376
e mm10.chr8                         41701859 1284 + 129401213 I
e canFam3.chr16                     41633543   0 +  59632846 C
e calJac3.chr3                        292365 959 + 190850796 I
e chlSab2.chr7                        324037   0 - 135778131 C
e papAnu2.chr5                        263900   0 - 178775436 C
e macFas5.chr5                        360136 7927 - 189454096 I
e rheMac3.chr5                        368738   0 - 184069350 C
e nomLeu3.chr7b                      1339862   0 - 115148730 I

a score=128.000000
s hg38.chr4_KI270925v1_alt            326310 5 +    555799 cagtt
s panTro4.chr4_AACZ03155287_random     23371 5 -     33815 ttgtt
i panTro4.chr4_AACZ03155287_random C 0 C 0
e mm10.chr8                         41701859 1284 + 129401213 I
e canFam3.chr16                     41633543 0 +  59632846 C
e calJac3.chr3                        292365 959 + 190850796 I
e chlSab2.chr7                        324037 0 - 135778131 C
e papAnu2.chr5                        263900 0 - 178775436 C
e macFas5.chr5                        360136 7927 - 189454096 I
e rheMac3.chr5                        368738 0 - 184069350 C
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e ponAbe2.chr4                     198123271 376 + 198332218 I

a score=62492.000000
s hg38.chr4_KI270925v1_alt            326315 172 +    555799 gcaacaCAAACAAATTAAGATGGCCTATTAGACACCCTAAATCTTACATCTTAAGGTGTTCTGTGATGTTGCAGTTCAACCCCCTCTCATTCCTCTCTACT-----CTTTTAGCAGTTacaaacaaacaaactcactcaccaaagaaaacaccaaacaaacatacaTCCAATAGTAT
s panTro4.chr4_AACZ03155287_random     23376 172 -     33815 gcaacaCAAACAAATTAAGATGGCCTATTAGATACCCTTAATCTTACGTCTTACGGTGTTCTGTAATGTTGCAGTTCAACCCCCTCTCATTCCTCTCTACA-----CTTTTAGCAGTTACAAACAAACAAACTCACTCACCAAAGAAAACACCAAACGAACATACATCCAATAGTAT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198123647 155 + 198332218 gcaacataaacaaattaagatggcctattagatacccttaatcttaaGT-------GGTTCTGCGATATTGTGGTTCAACCCCCTCTCATTCCTCT----------CTTTTAGCGGCCACAAACAAAAAAAC-----CACCAAACCAAACACCATATGAACAAACATCCAATAGTAC
i ponAbe2.chr4                     I 376 C 0
s calJac3.chr3                        293324 172 + 190850796 GCAACTCAAACAAATGAAGATGTCCTGTTACATATCCTTAATCTTAAGTCTTAAGGTGTTCTGTGATGTTGTGGTTCAATCCCCTCTCATTCCTCTCCACTCTTTCCTTTTAGGAGCTCCAAACAAACAAACAAAATCAGCAAACAAAA-ACCA----AACACACACCCAATAGTAT
i calJac3.chr3                     I 959 C 0
e mm10.chr8                         41701859 1284 + 129401213 I
e canFam3.chr16                     41633543   0 +  59632846 C
e chlSab2.chr7                        324037   0 - 135778131 C
e papAnu2.chr5                        263900   0 - 178775436 C
e macFas5.chr5                        360136 7927 - 189454096 I
e rheMac3.chr5                        368738   0 - 184069350 C
e nomLeu3.chr7b                      1339862   0 - 115148730 I

a score=50745.000000
s hg38.chr4_KI270925v1_alt            326487 200 +    555799 tgtgtccggaattggtgggttcttggtctaactgacttcaagaatgaagccacggacccttgcggtgagtgttacagttcctaaagatggtgtgtccagagtttgttcattcagatgttcagatgggtccagagtttcttccttctggtgggtttgtggtctaactggcttcaggaatgaagctgcagaccttcacggtg
s panTro4.chr4_AACZ03155287_random     23548 200 -     33815 tgtgtctggaattggtgggttcttggtctcactgacttcaagaatgaagccacggacccttgcggtgagtgttacagttcctaaagatggtgtgtccagagtttgttccttcagatgttcagatgggtccagagtttcttccctctggtgggtttgtggtctcactggcttcaggagtgaagctacagaccttcatggtg
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198123802 200 + 198332218 tgtgtccagaattggtgggttcttggtctcactgacttcaagaatgaagccgcagatctttgcagtgagtgttacagttcttaaagatggtgtgtccggagtttattccttcagatgttcagatgtgtccagagtttcctccttctggtgggtttgtggtctcgctgacttcaagagtgaagctgcggaccttcacggtg
i ponAbe2.chr4                     C 0 I 954
e mm10.chr8                         41701859 1284 + 129401213 I
e canFam3.chr16                     41633543   0 +  59632846 C
e calJac3.chr3                        293496   0 + 190850796 C
e chlSab2.chr7                        324037   0 - 135778131 C
e papAnu2.chr5                        263900   0 - 178775436 C
e macFas5.chr5                        360136 7927 - 189454096 I
e rheMac3.chr5                        368738   0 - 184069350 C
e nomLeu3.chr7b                      1339862   0 - 115148730 I

a score=66909.000000
s hg38.chr4_KI270925v1_alt           326687 352 +    555799 ttacagctcataaagatagcgcagacccaaagagtgagcagcagccgccaaagacggtgcagacccaaagagtgagcagcagcaggatttattgccaaaggcaaaagaacaaagcttctacaatctggaagaggaccctagccggttgccactgctagctcgggcagcctgcttttattcccttatctggccccacccacatcctactcattggctcattttagagagagctgattggtccattttacagaaagctgattgg-gccgttttacagatagctgattggtccattttgacagagcgctgattggtgcatttacaaacctttcgctagacacagagcgctgattgg
s panTro4.chr4_AACZ03155287_random    23748 352 -     33815 ttacatctcataaacataacacagacccaaagagtgagcagcagccaccaaagacggtgcagacccaaagactgagcagcagcaagatttattgcaaaaggcaaaagaacaaaccctccacactctgcaagaggaccctagccggttgccactgctagctcgggcagcctgcttttattcccttatctggccccacccacatcctactcattggctcattttagagagagctgattggtccattttacagaaagctgattgg-gccgttttacagagagctgattggtccattttgacagagcgctgattggtgtgtttacaaacgtttcgctagacacagagcgctgattgg
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                       229895 290 - 198332218 ttccagctcat--------------------------------------aaaaacggcgctgacctcaacagtgaacagcagcaagatttattgcaaacagcaaaagaatgaagcttccacagcagggaagaggacctgagcaggttgccactgctggctggggcagcctgcttttattccc-tatctggccccacccacatccta------------------------ctgattggtccattttacagaaagctgattggttccgttttacagagagctgattggtcagttttgacagagcagtgattggtgcatttaccaacctttcgctagacacagagcactgattgg
i ponAbe2.chr4                     n 954 M 1068
e mm10.chr8                        41701859 1284 + 129401213 I
e canFam3.chr16                    41633543   0 +  59632846 C
e calJac3.chr3                       293496   0 + 190850796 C
e chlSab2.chr7                       324037   0 - 135778131 C
e papAnu2.chr5                       263900   0 - 178775436 C
e macFas5.chr5                       360136 7927 - 189454096 I
e rheMac3.chr5                       368738   0 - 184069350 C
e nomLeu3.chr7b                     1339862   0 - 115148730 I

a score=43836.000000
s hg38.chr4_KI270925v1_alt           327039 493 +    555799 tgcatttacaatcctttagctagacaggaaagttctccaagtccccaccagattagctagacacggagcgctgattgatgcggttacaaacctctagctaaacagaaaagttctccaagtccccacccgacacagaagcccagctggcttcacctctcaatgacacttgctctgaggctttgcggcacctagcctgggtattccggcagcccagagggggcagcccagtaggcaccggccggccacaccgagtgtgggctcctgagcctgcacccacctggaaccagcactggcccgtgagcatgcacagccccgctcccacctgcgcctctccctccacacctggtggggagcagagggagccgccgggcctccgccagccccagagaagggcccccacagcacagcggtgggctgaagggctcctggagcaccgccagagcagttgctgagagccagtgagggctgctagcacgttgtcacctctcaGTAT
s panTro4.chr4_AACZ03155287_random    24100 493 -     33815 tgcatttacaatcctttagctagacaggaaagttctccaagtccccaccagattagctagacacagagtgctgattgatgtggttacaaacctctagctaaacagaaaagttctccaagtccccacccgacacagaaacccagccggcttcacctctcaatggcacttgccctgagactttgtggcacctagcctgggtactccggcagcccagagggggcagcccagtaggcaccggctggccacaccgagtgtgggccccggagcccgcacccacccggaaccagcactggcccacaagcatgcacagccccgctcccgcctgcgcctctccctccacacctggtggggagccgagggagccgctcggcctctgccagccccagagaagggcccccacagcacagcagcgggctgaagggctcctggagcacctccagagcggttgctgagagccagtgagggctgctagcacgttgtcacctctcaGTAT
i panTro4.chr4_AACZ03155287_random C 0 C 0
e mm10.chr8                        41701859 1284 + 129401213 I
e canFam3.chr16                    41633543   0 +  59632846 C
e calJac3.chr3                       293496   0 + 190850796 C
e chlSab2.chr7                       324037   0 - 135778131 C
e papAnu2.chr5                       263900   0 - 178775436 C
e macFas5.chr5                       360136 7927 - 189454096 I
e rheMac3.chr5                       368738   0 - 184069350 C
e nomLeu3.chr7b                     1339862   0 - 115148730 I
e ponAbe2.chr4                       230185 1068 - 198332218 M

a score=166267.000000
s hg38.chr4_KI270925v1_alt           327532 760 +    555799  
s panTro4.chr4_AACZ03155287_random    24593 763 -     33815  
i panTro4.chr4_AACZ03155287_random C 0 C 0
s calJac3.chr3                       293496 762 + 190850796  
i calJac3.chr3                     C 0 I 21
e mm10.chr8                        41701859 1284 + 129401213 I
e canFam3.chr16                    41633543   0 +  59632846 C
e chlSab2.chr7                       324037   0 - 135778131 C
e papAnu2.chr5                       263900   0 - 178775436 C
e macFas5.chr5                       360136 7927 - 189454096 I
e rheMac3.chr5                       368738   0 - 184069350 C
e nomLeu3.chr7b                     1339862   0 - 115148730 I
e ponAbe2.chr4                       230185 1068 - 198332218 M

a score=782.000000
s hg38.chr4_KI270925v1_alt           328292 8 +    555799 agcccgac
s panTro4.chr4_AACZ03155287_random    25356 8 -     33815 agcccgac
i panTro4.chr4_AACZ03155287_random C 0 C 0
e mm10.chr8                        41701859 1284 + 129401213 I
e canFam3.chr16                    41633543 0 +  59632846 C
e calJac3.chr3                       294258 21 + 190850796 I
e chlSab2.chr7                       324037 0 - 135778131 C
e papAnu2.chr5                       263900 0 - 178775436 C
e macFas5.chr5                       360136 7927 - 189454096 I
e rheMac3.chr5                       368738 0 - 184069350 C
e nomLeu3.chr7b                     1339862 0 - 115148730 I
e ponAbe2.chr4                       230185 1068 - 198332218 M

a score=20045.000000
s hg38.chr4_KI270925v1_alt           328300 106 +    555799 cacatgg-agaggccacatgaaggttctcaaatc-agaaccccacctgaggtcccagcctacaaccagtatcaaccaccagacatgtgagtaatgatgtttccagttg
s panTro4.chr4_AACZ03155287_random    25364 106 -     33815 cacatgg-agaggccacatgaaggttctcagatc-agaaccccagctgaggtcccagcctacaaccagtatcaaccaccagacacgtaagtaatgatgtttccagttg
i panTro4.chr4_AACZ03155287_random C 0 C 0
s calJac3.chr3                       294279 105 + 190850796 tacatgataggtataaaatgaagaatctcaattcaaaaaccctggctgaggtcacagtctacaaccagtatcaaccaccagacacatgagta---atgtttcctgttg
i calJac3.chr3                     I 21 C 0
e mm10.chr8                        41701859 1284 + 129401213 I
e canFam3.chr16                    41633543   0 +  59632846 C
e chlSab2.chr7                       324037   0 - 135778131 C
e papAnu2.chr5                       263900   0 - 178775436 C
e macFas5.chr5                       360136 7927 - 189454096 I
e rheMac3.chr5                       368738   0 - 184069350 C
e nomLeu3.chr7b                     1339862   0 - 115148730 I
e ponAbe2.chr4                       230185 1068 - 198332218 M

a score=40604.000000
s hg38.chr4_KI270925v1_alt           328406 148 +    555799 attccaaccaacagcctttg------ggtcacct-------ccagcctttggatctttgcatctgaaatgccacacatgacagagcagatacaag-catttctgctgtgtcctgtccaagtctctgactgatagaatctgggcttgttctaggcacctgagt
s panTro4.chr4_AACZ03155287_random    25470 148 -     33815 attccaaccaacagcctttg------ggtcacct-------ccagcctttggatctttgcatctgaaatgccacgcatgacagagcagatacaag-catttctgctgtgtcctgtccaagtctctgactgatagaatctaggcttgttctaggcacctgagt
i panTro4.chr4_AACZ03155287_random C 0 C 0
s calJac3.chr3                       294384 148 + 190850796 attccaaaaaacagcctttg------agtcacct-------ccagcctgtgggtctttgcatttgagatgccacacaagacagagcagagacaagccattcctgctatgtcctgtccaag-ccctgatcgctagtatctagggttgttctaggcatctgagt
i calJac3.chr3                     C 0 C 0
s mm10.chr8                        41703143 144 + 129401213 ACTCAAATCAGCTGACCTTGAATGTTGGTCATTTAACTGTCCTGGTTTCTGAGCCTTTGTGTCCGAGAAGCCAGATGTGACAGAGCAGACCCAGG-GAAGGCTGCTGTGCACTGC------CTATGATC-------TCTGTGCCTGTTTTAGGGAC----AC
i mm10.chr8                        I 1284 C 0
e canFam3.chr16                    41633543   0 +  59632846 C
e chlSab2.chr7                       324037   0 - 135778131 C
e papAnu2.chr5                       263900   0 - 178775436 C
e macFas5.chr5                       360136 7927 - 189454096 I
e rheMac3.chr5                       368738   0 - 184069350 C
e nomLeu3.chr7b                     1339862   0 - 115148730 I
e ponAbe2.chr4                       230185 1068 - 198332218 M

a score=3236.000000
s hg38.chr4_KI270925v1_alt           328554 6 +    555799 cttgag
s panTro4.chr4_AACZ03155287_random    25618 6 -     33815 cttgag
i panTro4.chr4_AACZ03155287_random C 0 C 0
s calJac3.chr3                       294532 6 + 190850796 tttgag
i calJac3.chr3                     C 0 C 0
s mm10.chr8                        41703287 6 + 129401213 TTCGGG
i mm10.chr8                        C 0 I 1
s canFam3.chr16                    41633543 6 +  59632846 CCTGGG
i canFam3.chr16                    C 0 C 0
e chlSab2.chr7                       324037 0 - 135778131 C
e papAnu2.chr5                       263900 0 - 178775436 C
e macFas5.chr5                       360136 7927 - 189454096 I
e rheMac3.chr5                       368738 0 - 184069350 C
e nomLeu3.chr7b                     1339862 0 - 115148730 I
e ponAbe2.chr4                       230185 1068 - 198332218 M

a score=2359.000000
s hg38.chr4_KI270925v1_alt            328560 7 +    555799 gttgttt
s panTro4.chr4_AACZ03155287_random     25624 7 -     33815 gttgttt
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198124956 7 + 198332218 GTTGTTT
i ponAbe2.chr4                     I 954 C 0
s calJac3.chr3                        294538 7 + 190850796 tttgatt
i calJac3.chr3                     C 0 I 5362
s mm10.chr8                         41703294 4 + 129401213 GATG---
i mm10.chr8                        I 1 C 0
s canFam3.chr16                     41633549 7 +  59632846 GTTATTT
i canFam3.chr16                    C 0 C 0
e chlSab2.chr7                        324037 0 - 135778131 C
e papAnu2.chr5                        263900 0 - 178775436 C
e macFas5.chr5                        360136 7927 - 189454096 I
e rheMac3.chr5                        368738 0 - 184069350 C
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=337061.000000
s hg38.chr4_KI270925v1_alt            328567 774 +    555799  
s panTro4.chr4_AACZ03155287_random     25631 760 -     33815  
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198124963 754 + 198332218  
i ponAbe2.chr4                     C 0 M 3061
s mm10.chr8                         41703298 767 + 129401213  
i mm10.chr8                        C 0 C 0
s canFam3.chr16                     41633556 756 +  59632846  
i canFam3.chr16                    C 0 C 0
e calJac3.chr3                        294545 5362 + 190850796 I
e chlSab2.chr7                        324037   0 - 135778131 C
e papAnu2.chr5                        263900   0 - 178775436 C
e macFas5.chr5                        360136 7927 - 189454096 I
e rheMac3.chr5                        368738   0 - 184069350 C
e nomLeu3.chr7b                      1339862   0 - 115148730 I

a score=21845.000000
s hg38.chr4_KI270925v1_alt            329341 70 +    555799 CGCAAGAAAGCACTAGATCATTAGTTTGCCTGGTAAGGGAAAAAACAGGGGCTGCAGCCTGCCCAGCTAC
s panTro4.chr4_AACZ03155287_random     26391 70 -     33815 CGCAAGAAAGCACTAGATCATTAGTTTGCCTGGTAAGGGAAAAAACAGCGGCTGCAGCCTGCCCAGCTGC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s mm10.chr8                         41704065 65 + 129401213 GGCAAGAAAGCACTATATCACTAGCCCGCCTTGT-----GGCAAACAGCAGCTGCTGCCAGACAAGCTCC
i mm10.chr8                        C 0 I 1
s canFam3.chr16                     41634312 66 +  59632846 TGCAAGAAAGCACTAGATCATTAGCTTGTCTCAT----GAACAAACAGTGGCTGCAGCCTGACCCAGTAT
i canFam3.chr16                    C 0 C 0
e calJac3.chr3                        294545 5362 + 190850796 I
e chlSab2.chr7                        324037  0 - 135778131 C
e papAnu2.chr5                        263900  0 - 178775436 C
e macFas5.chr5                        360136 7927 - 189454096 I
e rheMac3.chr5                        368738  0 - 184069350 C
e nomLeu3.chr7b                      1339862  0 - 115148730 I
e ponAbe2.chr4                     198125717 3061 + 198332218 M

a score=117773.000000
s hg38.chr4_KI270925v1_alt            329411 84 +    555799 AGAAGAAA-GTGGAATCAGCAGAACAAGTGGCCTGTGAAGATGCCAGCTTGTGAGAAATGCCTGGCTGA--CTGTGAA-CAGGGATAT
s panTro4.chr4_AACZ03155287_random     26461 84 -     33815 AGAAGAAA-GTGGAATCAGCAGAACAAGTGGCCTGTGAAGATGCCAGCTTGTGAGAAATGCCTGGCTGA--CTGTGAA-CAGGGATAT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s rheMac3.chr5                        368738 84 - 184069350 AGAAGAAA-GTGGAATCAGCAGAACAAGTGGCCTGTGAAGATGCCAGTGTGTGAGAAATGCCTGGCTGA--CTGTGAA-CAGGGATAT
i rheMac3.chr5                     C 0 C 0
s papAnu2.chr5                        263900 84 - 178775436 AGAAGAAA-GTGGAATCAGCAGAACAAGTGGCCTGTGAAGATGCCAGTGTGTGAGAAATGCCTGGCTGA--CTGTGAA-CAGGGATAT
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        324037 84 - 135778131 AGAAGAAA-GTGGAATCAGCAGAACAAGTGGCCTGTGAAGATGCCAGTGTGTGAGAAATGCCTGGCTGG--CTGTGAA-CAGGGATAT
i chlSab2.chr7                     C 0 C 0
s mm10.chr8                         41704131 81 + 129401213 AGAAGAGATGCAGAATCAGCAGATCTCATGATCCGTCGAGATACTGGTGTGTTTGAGATGCCTGACTGATCCCGTGAG-TGC------
i mm10.chr8                        I 1 C 0
s canFam3.chr16                     41634378 85 +  59632846 AGGGGAAA-GCCGAATCAGCAGAATGAGTGGCCTGTGGAGATGACAGTTTGTGAGAAATGCCTGGCTAA--GTGTGAAGCAGGGATAC
i canFam3.chr16                    C 0 C 0
e calJac3.chr3                        294545 5362 + 190850796 I
e macFas5.chr5                        360136 7927 - 189454096 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I
e ponAbe2.chr4                     198125717 3061 + 198332218 M

a score=1266634.000000
s hg38.chr4_KI270925v1_alt           329495 766 +    555799  
s panTro4.chr4_AACZ03155287_random    26545 795 -     33815  
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                       231259 793 - 198332218  
i ponAbe2.chr4                     M 1068 C 0
s rheMac3.chr5                       368822 747 - 184069350  
i rheMac3.chr5                     C 0 C 0
s papAnu2.chr5                       263984 747 - 178775436  
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                       324121 746 - 135778131  
i chlSab2.chr7                     C 0 C 0
s mm10.chr8                        41704212 776 + 129401213  
i mm10.chr8                        C 0 I 1705
s canFam3.chr16                    41634463 823 +  59632846  
i canFam3.chr16                    C 0 C 0
e calJac3.chr3                       294545 5362 + 190850796 I
e macFas5.chr5                       360136 7927 - 189454096 I
e nomLeu3.chr7b                     1339862   0 - 115148730 I

a score=834730.000000
s hg38.chr4_KI270925v1_alt           330261 606 +    555799  
s panTro4.chr4_AACZ03155287_random    27340 606 -     33815  
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                       232052 599 - 198332218  
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                       369569 581 - 184069350  
i rheMac3.chr5                     C 0 I 1
s papAnu2.chr5                       264731 581 - 178775436  
i papAnu2.chr5                     C 0 I 335
s chlSab2.chr7                       324867 581 - 135778131  
i chlSab2.chr7                     C 0 I 1
s canFam3.chr16                    41635286 584 +  59632846  
i canFam3.chr16                    C 0 C 0
e mm10.chr8                        41704988 1705 + 129401213 I
e calJac3.chr3                       294545 5362 + 190850796 I
e macFas5.chr5                       360136 7927 - 189454096 I
e nomLeu3.chr7b                     1339862   0 - 115148730 I

a score=130273.000000
s hg38.chr4_KI270925v1_alt           330867 82 +    555799 GAGAAGTTCT-----GAGAGAATTTTTAATCTTTAGGTCAGACAGCAAGGATGTGAGGCGGTGAAGTTAAATTACACTGAGTCACAT
s panTro4.chr4_AACZ03155287_random    27946 82 -     33815 GAGAAGTTCT-----GAGAGAATTTTTAATCTTTAGGTCAGACAGCAAGGATGTGAAGCGGTGAAGTTAAATTACACTGAGTTACAC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                       232651 82 - 198332218 GAGAAGTTCT-----GAGAGAATTTTTAATCTTTAGGTCAGACAGCAAGGATGTGAGGCAGTAAAGTTAAATTACACTGAGTTACAC
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                       370151 82 - 184069350 GAGAATTTCT-----GAGAGAATTTTCAATCTTTAGGTCAGACAGCAAGGATGTGAGGCAGTAAAATTAAATTACACTGAGTTACAT
i rheMac3.chr5                     I 1 I 2488
s papAnu2.chr5                       265647 82 - 178775436 gAGAATTTCT-----GAGAGAATTTTCAATCTTTGGGTCAGACAGCAAGGATGTGAGGcagtaaaattaaattacactGAGTTACAT
i papAnu2.chr5                     I 335 C 0
s chlSab2.chr7                       325449 82 - 135778131 GAGAATTTCT-----GAGAGAATTTTCAATCTTTAGGTCAGACAGCAAGGATGTGAGGCAGTAAAATTAAATTACACTGAGTTACAT
i chlSab2.chr7                     I 1 C 0
s canFam3.chr16                    41635870 87 +  59632846 GAGAATCTTTCGTAGGAGAATAGTATTTATCTTTAGTTCAGAGAGCAAGAATGTGAAGCAGTAAGGTTGAACTACCCTGGATTATAT
i canFam3.chr16                    C 0 C 0
e mm10.chr8                        41704988 1705 + 129401213 I
e calJac3.chr3                       294545 5362 + 190850796 I
e macFas5.chr5                       360136 7927 - 189454096 I
e nomLeu3.chr7b                     1339862  0 - 115148730 I

a score=8263.000000
s hg38.chr4_KI270925v1_alt           330949 14 +    555799 TGACGTTGACTAGT
s panTro4.chr4_AACZ03155287_random    28028 14 -     33815 TAATGTTCACTAGT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                       232733 14 - 198332218 TAATGTTCACTAGT
i ponAbe2.chr4                     C 0 C 0
s papAnu2.chr5                       265729 13 - 178775436 CAATGTTCACTAT-
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                       325531 13 - 135778131 CAATGTTCACTAT-
i chlSab2.chr7                     C 0 C 0
s canFam3.chr16                    41635957 14 +  59632846 TATTGTGCACTAGT
i canFam3.chr16                    C 0 C 0
e mm10.chr8                        41704988 1705 + 129401213 I
e calJac3.chr3                       294545 5362 + 190850796 I
e macFas5.chr5                       360136 7927 - 189454096 I
e rheMac3.chr5                       370233 2488 - 184069350 I
e nomLeu3.chr7b                     1339862  0 - 115148730 I

a score=18664.000000
s hg38.chr4_KI270925v1_alt           330963 23 +    555799 CTGATAGAT--ACAGAAACACACAA------------------
s panTro4.chr4_AACZ03155287_random    28042 23 -     33815 CTGATAGAT--ACAGAAACACACAG------------------
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                       232747 23 - 198332218 CTGATAGAT--ACAGAAACACACAA------------------
i ponAbe2.chr4                     C 0 C 0
s macFas5.chr5                       368063 22 - 189454096 ctgacagac--acacagacagaca-------------------
i macFas5.chr5                     I 7927 C 0
s papAnu2.chr5                       265742 23 - 178775436 CTGATATGT--ACAGAAACACGCAA------------------
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                       325544 23 - 135778131 CTGATATGT--ACAGAAACACGCAA------------------
i chlSab2.chr7                     C 0 T 6407
s canFam3.chr16                    41635971 43 +  59632846 TTGACAGATGCACGCAAATAAACATATGTGTATGTGTATACAT
i canFam3.chr16                    C 0 C 0
e mm10.chr8                        41704988 1705 + 129401213 I
e calJac3.chr3                       294545 5362 + 190850796 I
e rheMac3.chr5                       370233 2488 - 184069350 I
e nomLeu3.chr7b                     1339862  0 - 115148730 I

a score=-541.000000
s hg38.chr4_KI270925v1_alt           330986 4 +    555799 -TTAC
s panTro4.chr4_AACZ03155287_random    28065 4 -     33815 -TTAC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                       232770 4 - 198332218 -CTAC
i ponAbe2.chr4                     C 0 C 0
s papAnu2.chr5                       265765 4 - 178775436 -CTGc
i papAnu2.chr5                     C 0 I 3412
s canFam3.chr16                    41636014 4 +  59632846 GTGA-
i canFam3.chr16                    C 0 C 0
e mm10.chr8                        41704988 1705 + 129401213 I
e calJac3.chr3                       294545 5362 + 190850796 I
e chlSab2.chr7                       325567 6407 - 135778131 T
e macFas5.chr5                       368085 0 - 189454096 C
e rheMac3.chr5                       370233 2488 - 184069350 I
e nomLeu3.chr7b                     1339862 0 - 115148730 I

a score=33764.000000
s hg38.chr4_KI270925v1_alt           330990 78 +    555799 CTTCACT--CACAGa-----gtttcctagggctgcaggaaca----aagcgccataag---------------------ctcggtggctcaaaacatttggaaatggttc
s panTro4.chr4_AACZ03155287_random    28069 80 -     33815 CTTCACCCACACAGa-----gtttcctagggctgcaggaaca----aagcaccataag---------------------ctcggtggctgaaaacatttggaaatggttc
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                       232774 78 - 198332218 CTACACA--CACAGa-----gtttcttagggctgcaggaaca----aagtgccataag---------------------cttggtggctcaaaacattcggaaatggttc
i ponAbe2.chr4                     C 0 C 0
s macFas5.chr5                       368085 96 - 189454096 ---caca--gaGAGA-----GCTTCTTAGGGCTGCGGGAACA----ACATGCCATAAGTGTCAGTGATGAAACTGATGTTTCAGTGCCTCGAAACGTCAGGAAACGGTTC
i macFas5.chr5                     C 0 C 0
s canFam3.chr16                    41636018 87 +  59632846 ATGCACA--CACATATGCACACACTctagggctgcagtaacaaaccaatcaccataaa---------------------ctctatagcttaaagcaacagaagtttattc
i canFam3.chr16                    C 0 C 0
e mm10.chr8                        41704988 1705 + 129401213 I
e calJac3.chr3                       294545 5362 + 190850796 I
e chlSab2.chr7                       325567 6407 - 135778131 T
e papAnu2.chr5                       265769 3412 - 178775436 I
e rheMac3.chr5                       370233 2488 - 184069350 I
e nomLeu3.chr7b                     1339862  0 - 115148730 I

a score=11608.000000
s hg38.chr4_KI270925v1_alt           331068 17 +    555799 tctcacagagtcacagc
s panTro4.chr4_AACZ03155287_random    28149 17 -     33815 tctcacagagtcacagc
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                       232852 17 - 198332218 tctcacagagtcacagc
i ponAbe2.chr4                     C 0 M 3000
s rheMac3.chr5                       372721 17 - 184069350 TCTCACAgtgtcccagt
i rheMac3.chr5                     I 2488 C 0
s macFas5.chr5                       368181 15 - 189454096 --TCACAgtgtcccagt
i macFas5.chr5                     C 0 C 0
s canFam3.chr16                    41636105 12 +  59632846 tctcacagt-tca----
i canFam3.chr16                    C 0 C 0
e mm10.chr8                        41704988 1705 + 129401213 I
e calJac3.chr3                       294545 5362 + 190850796 I
e chlSab2.chr7                       325567 6407 - 135778131 T
e papAnu2.chr5                       265769 3412 - 178775436 I
e nomLeu3.chr7b                     1339862  0 - 115148730 I

a score=39209.000000
s hg38.chr4_KI270925v1_alt           331085 74 +    555799 cacggaagctccaagtctgaactcaaggtgttggcagggctgtgttccctctggaggccctac-ggaggcccctt-
s panTro4.chr4_AACZ03155287_random    28166 75 -     33815 cacggaagctccaagtctgaactcaaggtgttggcagggctgtgttccctctggagcccctatgggagggccctt-
i panTro4.chr4_AACZ03155287_random C 0 C 0
s rheMac3.chr5                       372738 74 - 184069350 tacggaagctccaagtctgaa-tcagggtgttggccgggctgtgttccctccggaggccccaggggagagtcctt-
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                       368196 74 - 189454096 tacggaagctccaagtctgaa-tcagggtgttggccgggctgtgttccctccggaggccccaggggagagtcctt-
i macFas5.chr5                     C 0 C 0
s canFam3.chr16                    41636117 64 +  59632846 ---ggaagctagaagcctgaaatcaagctggtggtagggcattactctctctcaaggctct---------ttcttg
i canFam3.chr16                    C 0 C 0
e mm10.chr8                        41704988 1705 + 129401213 I
e calJac3.chr3                       294545 5362 + 190850796 I
e chlSab2.chr7                       325567 6407 - 135778131 T
e papAnu2.chr5                       265769 3412 - 178775436 I
e nomLeu3.chr7b                     1339862  0 - 115148730 I
e ponAbe2.chr4                       232869 3000 - 198332218 M

a score=203304.000000
s hg38.chr4_KI270925v1_alt           331159 247 +    555799 cctcgtctccagcttctggtggcttcaagtgtcccgtagtttgtgacagcaacactc---------------caatctctgcctctgtcttcacatggccttctctgtgca--tctgtgtgtgtcaaatctttgtctgtctttgtcttataaggacact---tattggatttagggaccacatggataatccaagataacctcatttcaaaacccttaattttataacat-tggcaagac-tttgtttgtttgtttgtttgtt--ttgcaa
s panTro4.chr4_AACZ03155287_random    28241 248 -     33815 cctcatctccagcttctggtggcttcaagtgtcccgtagtttgtgacagcaacactc---------------caatctctgcctctgtcttcacatggccttctctgtgca--tctgtgtgtgtcaaatctttgtctgtctttgtcttataaggacact---tattggatttagggaccacatggataatccaagataacctcatttcaaaacccttaattttataacat-tggcaagacttttgtttgtttgtttgtttgtt--ttgcaa
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                       235918 240 - 198332218 cctcgtctccagcttccggtggcttcaagtgtcccatagtttgtgacagcaacactt---------------caatctctgc--ctgtcttcacatggccttctctgtgca--tctgtgtgtgtcaaatctttgtctgtttttgtcttatgaggacact---tattggatttggggaccacatggataatctaagataacctcatttcaaaacccttaattttataacat-tggcaagac-ttt-----tttttttttttttt--tttcaa
i ponAbe2.chr4                     M 3000 C 0
s rheMac3.chr5                       372812 239 - 184069350 cctggtctccagcttctggtggctgcaagtgt--cgtggttcgtgacagcagcactc---------------cagtccctgcctgtgtcttcacgtgcacttctctgtgcatctctgtgtgtgtcagatctttgtc----tttctcttacaaggacact---tattggatttagggaccacttggataatccaagataacctcatttcaagacccttcattttataactt-tggcaagac-ttt-----tttttttttttttttccccca-
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                       368270 237 - 189454096 cctggtctccagcttctggtggctgcaagtgt--cgtggttcgtgacagcagcactc---------------cagtccctgcctgtgtcttcacgtgcacttctctgtgcatctctgtgtgtgtcagatctttgtc----tttctcttacaaggacact---tattggatttagggaccacttggataatccaagataacctcatttcaagacccttcattttataactt-tggcaagac-ttt-----tttttttttttttt--cccca-
i macFas5.chr5                     C 0 C 0
s canFam3.chr16                    41636181 248 +  59632846 cctc--ttccagtttctggtggatctagacattccttggtttgtggctgcatgactctctctaaatctccatcattctttgcctccatctccacatagcttcctcc-------tctgtgtgtcttaaatctctccttgtgtttctcatataaggaaacttaatatttggcttagggctcatctggattacttaggatgatcttaacttgagatccttaacttaattatatctgaaaaggc-ctg-----tttgtttttcccaa--------
i canFam3.chr16                    C 0 C 0
e mm10.chr8                        41704988 1705 + 129401213 I
e calJac3.chr3                       294545 5362 + 190850796 I
e chlSab2.chr7                       325567 6407 - 135778131 T
e papAnu2.chr5                       265769 3412 - 178775436 I
e nomLeu3.chr7b                     1339862   0 - 115148730 I

a score=145079.000000
s hg38.chr4_KI270925v1_alt           331406 101 +    555799 ataaggccatagtcacaggttccggatggatatatcatttgagggga---gac--aattcaactcaCTATATACACAAACACATGTGTGTATCTATATAGCTGTAT
s panTro4.chr4_AACZ03155287_random    28489 101 -     33815 ataaggccatagtcacaggttccggatggacatgtcatttgagggga---gac--aattcaactcaCTATATACACAAACACATGTGTGTATCTATATAGCTGTAT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                       236158  99 - 198332218 ataaggccgtagtcacaggttctgggtggacatatcatttgagggga---gac--aattcaactcaCTATATACACAAACACATGTGTATA--TATATAGCTGTAT
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                       373051 101 - 184069350 ataaggccacagtcacaggttctgggtggacatatcattggagggga---gac--aattcaactcaCTTTATACACAAACACGTGTGTGTATCTATATCTCTGTAT
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                       368507 101 - 189454096 ataaggccacagtcacaggttctgggtggacatatcattggagggga---gac--aattcaactcaCTTTATACACAAACACGTGTGTGTATCTATATCTCTGTAT
i macFas5.chr5                     C 0 C 0
s chlSab2.chr7                       319160 101 - 135778131 ATAAGGCCACAGTCACAGGTTCTGGGTGGACATATCATTTGAGGGGA---GAC--AATTCAACTCACTTTATACACAAACACATGTGTGTATCTATATCTCTGTAT
i chlSab2.chr7                     T 6407 C 0
s canFam3.chr16                    41636429 101 +  59632846 ataaagtcacaatcACAAGATTTGAGTGGACTTATCATCTAAAGGGAATGGACCACATTAACCTCACCAT----ACATGCACATGTGTATA-CAatatatatgcat
i canFam3.chr16                    C 0 I 2073
e mm10.chr8                        41704988 1705 + 129401213 I
e calJac3.chr3                       294545 5362 + 190850796 I
e papAnu2.chr5                       265769 3412 - 178775436 I
e nomLeu3.chr7b                     1339862   0 - 115148730 I

a score=369740.000000
s hg38.chr4_KI270925v1_alt           331507 302 +    555799 AATTGA-CACCATGAAATCATTAATAAAAACACTGCCC---ttttttgagacagagtctcgctctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaacctccacctcccggattcaagcaattctcctgcctcagcctcccaagtagctgggattacaagcgcccgccaccacgcctggctaatttttgtatttttagtagagacggggtttcaccatgttggccaggctggtctcaatctcttgacctggtgatccacctgccttggcctcccaaagtgctgggattccaga
s panTro4.chr4_AACZ03155287_random    28590 302 -     33815 AATTGA-CACCATGAAATCATTAATAAAAACACTGCCC---ttttttgagacagagtctcgctctgtcgcccaggctggagtgcagtggtgcgatctcggctcattgcaacctccacctcccggattcaagcaattctcctgcctcagcctcccaagtagctgggattacaagcgcccgccacaacgcctggctaatttttgtatttttagtagagacagggtttcaccatgttggccaggctggtctcaatctcttgacctagtgatccacctgccttggcctcccaaagtgctgggattacaga
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                       236257 293 - 198332218 AACTGA-CACCATGAAATCATTAATAAAAATACTGCCC--tttttttgagacagagtctcgctctgtcacccaggctggagtgcagtggtgtgatctcagctcactgcaacctccacctcctgggttcaagcaattctcctgcctcagcctcccaggtagctgggattacaagcgcccgccaccacgcctggctaatctttgtatttttagtagag----------accatgttggccaggctggtctcgatctcttgacctggtgatccacctgccttggcctcccaaagtgctgggattacagA
i ponAbe2.chr4                     C 0 I 2276
s rheMac3.chr5                       373152 305 - 184069350 AATTGGCCACTGTGAAATCATTAATAAAAACGCTGCCC-ttttttttgagatggagtctcactctgtcgcccaggctggagtgcagtggcgcgatcttggctctctgcaacctccacctcccgggttcaagcgattctcctgcctcagcctcccgagtagctgggactacaggtgcccaccacctcgcccggctaatttttgtgtttttagtagagatggggattcactgtgttggccagactggtcttgatctcttgacctggtgatccacccgcctcggcctcccaaagtgctgggattacagg
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                       368608 305 - 189454096 AATTGGCCACTGTGAAATCATTAATAAAAACGCTGCCC-ttttttttgagatggagtcgcactctgtcgcccaggctggagtgcagtggcgcgatcttggctcactgcaacctccacctcccgggttcaagcgattctcctgcctcagcctcccgagtagctgggactacaggtgcccaccacctcgcccggctaatttttgtgtttttagtagagatggggattcactgtgttggccagactggtcttgatctcttgacctggtgatccacccgcctcggcctcccaaagtgctgggattacagg
i macFas5.chr5                     C 0 C 0
s chlSab2.chr7                       319261 306 - 135778131 AATTGGCCACTGTGAAATCATTAATAAAAACACTGCCCtttttttttgagacagagtctcgctctgtcacccaggctggagtgcagaggcgtgatcttggctcactgcaacctccacctcccgggttcaagtgattctcctgcctcagcctcccgagtagctgggactacaggtgcccaccaccacgcccagctaatttttgtgtttttagtagagatgaggtttcactgtgttggccagactggtcttgatctcttgacctggtgatccacccgcctcggcctcccaaagtgctgggattacagg
i chlSab2.chr7                     C 0 C 0
e mm10.chr8                        41704988 1705 + 129401213 I
e canFam3.chr16                    41636530 2073 +  59632846 I
e calJac3.chr3                       294545 5362 + 190850796 I
e papAnu2.chr5                       265769 3412 - 178775436 I
e nomLeu3.chr7b                     1339862   0 - 115148730 I

a score=286999.000000
s hg38.chr4_KI270925v1_alt           331809 342 +    555799 tgtaagctacccctcccATATAAAACACTGCCCTTTCTATAGAAAAACTGGTCAAGTACTGGACAGTTTACTACAAAAGAAACAGTAAGTAGATAAAAAATGAAACCTAGGTTCAAAAGCATGAATAATGAatcttgattttaatgatggtttcatcagtgtatgcatatgtccaaacttatcaaattgtacactaaatatgtgtagttttttatattgattttacctcaacaaagctattataaaTACAAATAATAAAAAGTGCAAATAAATTGACAAGATACAAATATATTTAAATATCAAAATGATAGAGATTAAAAAACTGTGCTGCTggccaggtgc
s panTro4.chr4_AACZ03155287_random    28892 342 -     33815 tgtaagctacccctcccATATAAAACACTGCCCTTTCTatagaaaaactggtcaagtactggacagtttactacaaaagaaacagtaagtagataaaaaatgaaacctaggttcaaaagcatgaataatgaatcttgattttaatgatggtttcatcagtgtatgcatatgtccaaacttatcaaattgtacactaaatatgtgtagttttttatattgattttacctcaacaaagctattataaatacaaataataaaaagtgcaaataaattgacaagatacaaatatatttaactatcaaaatgatagagattaaaaaactgtgctgctggccaggtgc
i panTro4.chr4_AACZ03155287_random C 0 C 0
s rheMac3.chr5                       373457 342 - 184069350 cgtgagccaccacacccagACAAAACACTGCCCTTTCTATAGAAAAACTGGTCAAGCACTGGACAGTTTACTAAAAAAGAAACAGTAAATAGATGAAAAATGAAACCTAGGTTCAAAAGCATGAATAATGAatcttgattttaatgatggtttcatcagtgtatacatatgtccaaactcatcaaattgtacattaaatatgtgcagtttttcatattgattttacctcaacaaagctattACAAATACAAATAACAAAAAACGCAAATAAAATGACAAGATACAAATACATTTAACTATCAAAATGATAGAGATTATAAAACAGTGCTGCTggctgggtgt
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                       368913 342 - 189454096 cgtgagccaccacacccagACAAAACACTGCCCTTTCTatagaaaaactggtcaagcactggacagtttactaaaaaagaaacagtaaatagatgaaaaatgaaacctaggttcaaaagcatgaataatgaatcttgattttaatgatggtttcatcagtgtatacatatgtccaaactcatcaaattgtacattaaatatgtgcagtttttcatattgattttacctcaacaaagctattacaaatacaaataacaaaaaacgcaaataaaatgacaagatacaaatacatttaactatcaaaatgatagagattataaaacagtgctgctggctgggtgt
i macFas5.chr5                     C 0 C 0
s chlSab2.chr7                       319567 336 - 135778131 cgtgagccaccacacccagACAAAACACTGCCCTTTCTATAGAAAAACTGGTCAAGTACTGGACAGTTTACTAAAAAAGAAACAGTAAATAGATGAAAAATGAAACCTAGGTTCAAAAGCATGAATAATGAatcttgattttaatgatggtttcatcagtgtatacgtacgtccaaactcatcaaatcgtacattaaatatgtgcaatttttcatattgattttacctcaacaaagctattacaaatacaaataacaaaaaactcaaataaaatgacaagatccagatacaTTTAACTATCAAAAT------GATTAAAAAACAGTGCTGCTggctgggtgt
i chlSab2.chr7                     C 0 C 0
e mm10.chr8                        41704988 1705 + 129401213 I
e canFam3.chr16                    41636530 2073 +  59632846 I
e calJac3.chr3                       294545 5362 + 190850796 I
e papAnu2.chr5                       265769 3412 - 178775436 I
e nomLeu3.chr7b                     1339862   0 - 115148730 I
e ponAbe2.chr4                       236550 2276 - 198332218 I

a score=267984.000000
s hg38.chr4_KI270925v1_alt           332151 219 +    555799 ggtggctcacgcctgtaattccagcactttgggaggccaaagcgggtggatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccacatctctactaaaaatacaaaaattagctgggcatgatggtgcacgcctgtgatcccaactacttgggaggctgaggcaggagaatcgcttgaacctgggaggcagaagttgcagtgag
s panTro4.chr4_AACZ03155287_random    29234 219 -     33815 ggtggctcacgcctgtaatcccagcactttgggaggccaaagcgggtggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagctgggcatgatggtgcacgcctgtgatcccagctacttgggaggctgaggcaggagaatcgcttgaacctgggaggcagaagttgcagtgag
i panTro4.chr4_AACZ03155287_random C 0 C 0
s rheMac3.chr5                       373799 218 - 184069350 ggtggctcacacctgtaatccccgcactttgggaggctgatgtgggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggcgaaccaccatctctactaaaaatacaaaagttagccggg-atggtggtgcatgcctgtgatcccagctactcgggaggctgaggcaggagaatcgcttgaactcaggaggcagaaattacagtgag
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                       369255 218 - 189454096 ggtggctcacacctgtaatccccgcactttgggaggctgatgtgggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggcgaaccaccatctctactaaaaatacaaaagttagccggg-atggtggtgcatgcctgtgatcccagctactcgggaggctgaggcaggagaatcgcttgaactcaggaggcagaaattacagtgag
i macFas5.chr5                     C 0 C 0
s chlSab2.chr7                       319903 218 - 135778131 ggtggctcacgcctgtaatcctcgcactttgggaggctgaggcgggtggattacctgaggtcaggagttcaagaccagcctggccaacatggcgaaacaccatctctactaaaaatacaaaagttagccggg-atggtggtgcacacctgtgatcccagctactcgggaggctgaggcaggagaatcgcttgaactcaggaggcagaaattacagtgag
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                       299907 219 + 190850796 ggtggctcacgcctgtaatcccagcactttgggagtccgaggcatgcaaatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccgaatttactaaaagtacaaaaattagctgggcatggtggtgcacacctgtgatcccagctactcgggaggctgaggcaggagaatagcttgagcctggaaggcagaagtttcagtgag
i calJac3.chr3                     I 5362 C 0
e mm10.chr8                        41704988 1705 + 129401213 I
e canFam3.chr16                    41636530 2073 +  59632846 I
e papAnu2.chr5                       265769 3412 - 178775436 I
e nomLeu3.chr7b                     1339862   0 - 115148730 I
e ponAbe2.chr4                       236550 2276 - 198332218 I

a score=466258.000000
s hg38.chr4_KI270925v1_alt            332370 324 +    555799 ctgagatcaggccgctgtactccagcctgggcaacagaatgaggctccatctc-aaaaaaacgacagacaaacaaaaa-----aCAGTGCTGTTGAGTGTGCATTGAGACAGGCATTTTCCAACACTGCCTTTCTGGAAGCAGGGAGGAGAGGCACAGAAATTTCAGC-AAGGGTAAAGTCTTCATCCTGCAACCATATTTCTAGGAGTCTAGATAATTCGATATACAGGTAAAGTCACAGCATTTATTTAATCATGTTAATTAG-----TTATGTAACAT-------ATA--ATAAAATAATATTGTATGTTAATACATAATATAAATATATTATGCTAATACA
s panTro4.chr4_AACZ03155287_random     29453 317 -     33815 ccgagatcaggctgctgtactccagcctgggcaacagaatgaggctccatctc-aaaaaaacgacagacaaacaaaaa-----acagtgctgttgagtgtgcattgagacaggcattttccaacactgcCTTTCTGGAAGCAGGGAGGAGAGGCACAGAAATTTCAGC-AAGGGTAAAGTCTTCACCCAGCAACCATGTTTCTAGGAGTCTAGGTAATTCAATATACAGGTAAAGTCACAGCATTTATTTAATCATGTTAATTAG-----TTATGTAACAT----------------AATAATATTGTATGTTAATACATAATATAGATATATTATGCTAATACA
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198128780 320 + 198332218 ctgagatcaggtcactgtactccagcctgggcaatagagtgaggctccccttc-aaaaaaacgacag----acaaaaa-----aCAGTGCTGTTGAGTGTGCATTGAGACAGGCATTTTCCAACACCGCCTTTCTGGAAGCAGGGAGGAGAGGCACAGAAATTTCAGC-AAGGGTAAAGTCTTCATCCTGCAACCATGTTTCTAGGAGTCTAGACAATTCGATATACGGGTAAAGTCACAGCATTTATTTAATCATGTTAATTAG-----TTATGTAGtat-------ata--ataaaataatattgtatgttaatatataatataaatatattatGCTAATACA
i ponAbe2.chr4                     M 3061 C 0
s rheMac3.chr5                        374017 323 - 184069350 ctgagatcaggccactggactccagcatgggcaacagaatgaggctccatctccaaaaaaatgacaaacaaac-aaaa-----aCCGTGCTGTGGAGTGTGCATTGAGACAGGCATTTTCCAACACTGACTTTCTGGAAGCAGGGAGAAGAG--ACAGAAATTTCAGCAAAGGATAAAGTCTTTATCCTGCACCCATGTTTCCAGGAGTCTAGATAATTCGATACA-GGGTAAAGTCACAG-ATTTATTTAATCATGTTAATTAG-----TTATGTAACATAG-----ATA--ATAAAATAACATTGTATGTTAATATATAATATACATATATTATGCGAATACA
i rheMac3.chr5                     C 0 I 1609
s macFas5.chr5                        369473 328 - 189454096 ctgagatcaggccactggactccagcatgggcaacagaatgaggctccatctccaaaaaaatgacaaacaaac-aaaa-----accgtgctgtggagtgtgcattgagacaggcattttccaacactgACTTTCTGGAAGCAGGGAGAAGAG--ACAGAAATTTCAGCAAAGGATAAAGTCTTTATCCTGCACCCATGTTTCCAGGAGTCTAGATAATTCGATACA-GGGTAAAGTCACAG-ATTTATTTAATCATGTTAATTAG-----TTATGTAACATAGATAATATA--ATAAAATAACATTGTATGTTAATATATAATATACATATATTATGCGAATACA
i macFas5.chr5                     C 0 I 1
s chlSab2.chr7                        320121 321 - 135778131 ctgagatcaggccactggactccagcatgggcaacagaatgaggctccatctcaaaaaacacgacaaacaaac-aaaa-----aCAGTGCTGTTGAATGTGCATTGAGACAGGCATTTTCCAACACTGCCTTTCTGGAAGCAGGGAGAAGAG--AGAGAAATTTCAGCAAAGGATAAAGTCTTTATCCTGCAACCATGTTTCCAGGAGTCTAGATAATTCGATACC-AGGTGAA-TCACAG-ATTTATTTAATCATGTGAATTAG-----TTATGTAATATAG-----ATAATATAAAATAACA---TATGCTAATATATAATATACATATATTATGCTAATACA
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        300126 322 + 190850796 ctgagatcacaccactgcactccagcgtgggcaacagagtgagactccatctc-agaaaaacaaaaaacaaacaaaaacaaaCACAGTGCTGTCAAGTGCGCACTGAGGCAGG-ATCTTCCAACACTGCCTTTCCAGAAGCAGAGAGGAGAGGCACAGAAATTTCAGC-AGGGTTAAAGTC-TCATCCTGCAACCATGTTTTCAGGAGTCTAGACGGTTCAATAGATGGGTAAAGTCACAG----CACTTAGTCATGTTAATTAGTTACATTATGTAACAT-------ATG--ATAAGtta------tatattaatatgtaatataaatatattatGCTAATCCA
i calJac3.chr3                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e papAnu2.chr5                        265769 3412 - 178775436 I
e nomLeu3.chr7b                      1339862   0 - 115148730 I

a score=-2382.000000
s hg38.chr4_KI270925v1_alt            332694 2 +    555799 -TT
s panTro4.chr4_AACZ03155287_random     29770 2 -     33815 -TT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129100 2 + 198332218 -TT
i ponAbe2.chr4                     C 0 C 0
s macFas5.chr5                        369802 1 - 189454096 -T-
i macFas5.chr5                     I 1 C 0
s chlSab2.chr7                        320442 1 - 135778131 -T-
i chlSab2.chr7                     C 0 I 6757
s calJac3.chr3                        300448 2 + 190850796 TT-
i calJac3.chr3                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e papAnu2.chr5                        265769 3412 - 178775436 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=5737.000000
s hg38.chr4_KI270925v1_alt            332696 8 +    555799 GATATATA
s panTro4.chr4_AACZ03155287_random     29772 8 -     33815 AATATATA
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129102 8 + 198332218 GATATATA
i ponAbe2.chr4                     C 0 C 0
s macFas5.chr5                        369803 8 - 189454096 AATCTATA
i macFas5.chr5                     C 0 I 1587
s calJac3.chr3                        300450 8 + 190850796 AATATATA
i calJac3.chr3                     C 0 I 1660
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e chlSab2.chr7                        320443 6757 - 135778131 I
e papAnu2.chr5                        265769 3412 - 178775436 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=5743.000000
s hg38.chr4_KI270925v1_alt            332704 22 +    555799 CACACTTAGTCCTTCTATCTGT
s panTro4.chr4_AACZ03155287_random     29780 22 -     33815 CACACTTAGTCCTTCTATCTGT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129110 22 + 198332218 TACACTTAGTCCTCCTATCTGT
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        320443 6757 - 135778131 I
e papAnu2.chr5                        265769 3412 - 178775436 I
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=28085.000000
s hg38.chr4_KI270925v1_alt            332726 54 +    555799 TACTAAAGGGAGCTCACGTGGCACCAACAAGGAAACACACACTTAGTCCTTCTA
s panTro4.chr4_AACZ03155287_random     29802 54 -     33815 TACTAAAGGGAGCTCACGTGGCACCAACAAGGAAACACACACTTAGTCCTTCTA
i panTro4.chr4_AACZ03155287_random C 0 I 111
s ponAbe2.chr4                     198129132 54 + 198332218 TACTAAAGGGAGCTCACCTGACATCAACAAGGAAACACACACTTAGTCCTTCTA
i ponAbe2.chr4                     C 0 C 0
s chlSab2.chr7                        327200 54 - 135778131 tactaaagggagCTCATGTGACATCCACAAGGAAACACACACTTAGTCCTTCTA
i chlSab2.chr7                     I 6757 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e papAnu2.chr5                        265769 3412 - 178775436 I
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=2838.000000
s hg38.chr4_KI270925v1_alt            332780 5 +    555799 TCTGT
s panTro4.chr4_AACZ03155287_random     29967 5 -     33815 TCTGT
i panTro4.chr4_AACZ03155287_random I 111 C 0
s ponAbe2.chr4                     198129186 5 + 198332218 TCTGT
i ponAbe2.chr4                     C 0 C 0
s chlSab2.chr7                        327254 5 - 135778131 TCTGT
i chlSab2.chr7                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e papAnu2.chr5                        265769 3412 - 178775436 I
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=27560.000000
s hg38.chr4_KI270925v1_alt            332785 42 +    555799 TACTAAAGCGAGCTCACGTGACATCAACAAGGAAACACACTT
s panTro4.chr4_AACZ03155287_random     29972 42 -     33815 TACTAAAGGGAGCTCACGCGACATCAACAAGGAAACACACTT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129191 40 + 198332218 TACTAAAGCAAGCTCACCTGACATCAGCAAGGAAACAGTT--
i ponAbe2.chr4                     C 0 T 55
s papAnu2.chr5                        269181 42 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAGGAAATGCACTT
i papAnu2.chr5                     I 3412 C 0
s chlSab2.chr7                        327259 42 - 135778131 TACTAAAGGGAGCTCATGTGACATCCACAAGGAAACAcactt
i chlSab2.chr7                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=7116.000000
s hg38.chr4_KI270925v1_alt            332827 8 +    555799 AGTCCTTC
s panTro4.chr4_AACZ03155287_random     30014 8 -     33815 AGTCCTTC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129176 8 + 198332218 AGTCCTTC
i ponAbe2.chr4                     T 55 C 0
s papAnu2.chr5                        269223 8 - 178775436 AGTCCTTT
i papAnu2.chr5                     C 0 I 1
s chlSab2.chr7                        327301 8 - 135778131 agtccttc
i chlSab2.chr7                     C 0 T 109
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=3930.000000
s hg38.chr4_KI270925v1_alt            332835 7 +    555799 TATCTGT
s panTro4.chr4_AACZ03155287_random     30022 7 -     33815 TATCTGT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129184 7 + 198332218 TATCTGT
i ponAbe2.chr4                     C 0 C 0
s papAnu2.chr5                        269232 7 - 178775436 TATCTGT
i papAnu2.chr5                     I 1 T 58
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 109 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=9127.000000
s hg38.chr4_KI270925v1_alt            332842 37 +    555799 TACTAAAGGGAGTTCACGTGACATCAGCAAGGAAACA
s panTro4.chr4_AACZ03155287_random     30029 37 -     33815 TACTAAAGGGAGTTCACGTGACATCAGCAAGGAAACA
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129191 37 + 198332218 TACTAAAGCAAGCTCACCTGACATCAGCAAGGAAACA
i ponAbe2.chr4                     C 0 I 11
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 109 - 135778131 T
e papAnu2.chr5                        269239 58 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=573.000000
s hg38.chr4_KI270925v1_alt            332879 6 +    555799 CAGTCT
s panTro4.chr4_AACZ03155287_random     30066 6 -     33815 CAGTCT
i panTro4.chr4_AACZ03155287_random C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 109 - 135778131 T
e papAnu2.chr5                        269239 58 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e ponAbe2.chr4                     198129228 11 + 198332218 I

a score=302.000000
s hg38.chr4_KI270925v1_alt            332885 2 +    555799 TA
s panTro4.chr4_AACZ03155287_random     30072 2 -     33815 CA
i panTro4.chr4_AACZ03155287_random C 0 T 218
s ponAbe2.chr4                     198129239 2 + 198332218 TA
i ponAbe2.chr4                     I 11 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 109 - 135778131 T
e papAnu2.chr5                        269239 58 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=11534.000000
s hg38.chr4_KI270925v1_alt            332887 44 +    555799 TCTGTTACTAAAGCGAGCTCACGCGACATCAACAAGGAAACACA
s panTro4.chr4_AACZ03155287_random     29856 44 -     33815 TCTGTTACTAAAGGGAGCTCACGAGACATCAACAAGGAAACACA
i panTro4.chr4_AACZ03155287_random T 218 C 0
s ponAbe2.chr4                     198129241 44 + 198332218 TCTGTTACTAAAGGGAGCTCACGTGACATCAACAAGGAAACACA
i ponAbe2.chr4                     C 0 T 57
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 109 - 135778131 T
e papAnu2.chr5                        269239 58 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=3315.000000
s hg38.chr4_KI270925v1_alt            332931 18 +    555799 GTTAGTCCTTCTATCTGT
s panTro4.chr4_AACZ03155287_random     29900 15 -     33815 GTTAGTCCT---ATCTGT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129228 18 + 198332218 GTTAGTCCCTCTATCTGT
i ponAbe2.chr4                     T 57 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 109 - 135778131 T
e papAnu2.chr5                        269239 58 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=26846.000000
s hg38.chr4_KI270925v1_alt            332949 57 +    555799 TACTAAAGGGAGCTCACGAGACATCAACAAGGAAACACAGTTAGTCCTTC-TATCTGT
s panTro4.chr4_AACZ03155287_random     29915 57 -     33815 TACTAAAGGGAGCTCACGAGACATCAACAAGGAAACACAGTTAGTCCTTC-TATCTGT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129246 57 + 198332218 TACTAAAGGGAGCTCACGTGACATCAACAAGGAAACACACTTAGTCCTTC-TATCTGT
i ponAbe2.chr4                     C 0 C 0
s papAnu2.chr5                        269181 58 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAGGAAATGCACTTAGTCCTTTGTATCTGT
i papAnu2.chr5                     T 58 T 58
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 109 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=21509.000000
s hg38.chr4_KI270925v1_alt            333006 48 +    555799 TACTAAAGGGAGCTCAAGTGACATCAACAAGGAA--ACACACTTAGTCCT
s panTro4.chr4_AACZ03155287_random     29972 48 -     33815 TACTAAAGGGAGCTCACGCGACATCAACAAGGAA--ACACACTTAGTCCT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129303 50 + 198332218 CACTAAAGCAAGCTCACGTGACATCAACAAGGAAACACACACTTAGTCCT
i ponAbe2.chr4                     C 0 I 54
s papAnu2.chr5                        269181 48 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAGGAA--ATGCACTTAGTCCT
i papAnu2.chr5                     T 58 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 109 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=3720.000000
s hg38.chr4_KI270925v1_alt            333054  9 +    555799 -TCCATCTGT
s panTro4.chr4_AACZ03155287_random     30020  9 -     33815 -TCTATCTGT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129407  9 + 198332218 -TGTATCTGT
i ponAbe2.chr4                     I 54 C 0
s papAnu2.chr5                        269229 10 - 178775436 TTGTATCTGT
i papAnu2.chr5                     C 0 T 58
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 109 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=6920.000000
s hg38.chr4_KI270925v1_alt            333063 36 +    555799 TACTACAGGGAGCTCATGTGACATCAGCAAGGAAAC
s panTro4.chr4_AACZ03155287_random     30029 36 -     33815 TACTAAAGGGAGTTCACGTGACATCAGCAAGGAAAC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129416 34 + 198332218 TACTCAAGCGAGCT--TGTGACATCAACAAGGAAAC
i ponAbe2.chr4                     C 0 I 127
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 109 - 135778131 T
e papAnu2.chr5                        269239 58 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=282.000000
s hg38.chr4_KI270925v1_alt            333099 3 +    555799 ACA
s panTro4.chr4_AACZ03155287_random     30065 3 -     33815 ACA
i panTro4.chr4_AACZ03155287_random C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 109 - 135778131 T
e papAnu2.chr5                        269239 58 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e ponAbe2.chr4                     198129450 127 + 198332218 I

a score=573.000000
s hg38.chr4_KI270925v1_alt            333102 2 +    555799 GT
s panTro4.chr4_AACZ03155287_random     30068 2 -     33815 GT
i panTro4.chr4_AACZ03155287_random C 0 I 224
s ponAbe2.chr4                     198129577 2 + 198332218 GT
i ponAbe2.chr4                     I 127 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 109 - 135778131 T
e papAnu2.chr5                        269239 58 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=946.000000
s hg38.chr4_KI270925v1_alt            333104 10 +    555799 CCTTCTATCT
s ponAbe2.chr4                     198129579 10 + 198332218 CCTTCTATCT
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 109 - 135778131 T
e papAnu2.chr5                        269239 58 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I
e panTro4.chr4_AACZ03155287_random     30070 224 -     33815 I

a score=9523.000000
s hg38.chr4_KI270925v1_alt            333114 41 +    555799 ATTACTAAACGGAGCTCACGTGACATCAGCAAGGAAACACA
s panTro4.chr4_AACZ03155287_random     30294 41 -     33815 GTTACTAAAGCGAGCTCACGCGACATCAACAAGGAAACACA
i panTro4.chr4_AACZ03155287_random I 224 C 0
s ponAbe2.chr4                     198129589 41 + 198332218 GTTGCTAAAGGGAGCTCATGTGACATCAACAAGGAAACACA
i ponAbe2.chr4                     C 0 T 391
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 109 - 135778131 T
e papAnu2.chr5                        269239 58 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=-442.000000
s hg38.chr4_KI270925v1_alt            333155  4 +    555799 G-------TAC
s panTro4.chr4_AACZ03155287_random     30335 11 -     33815 GTTAGTCCTTC
i panTro4.chr4_AACZ03155287_random C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 109 - 135778131 T
e papAnu2.chr5                        269239 58 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I
e ponAbe2.chr4                     198129630 391 + 198332218 T

a score=1721.000000
s hg38.chr4_KI270925v1_alt            333159 7 +    555799 TATCTGT
s panTro4.chr4_AACZ03155287_random     30346 7 -     33815 TACCTGT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129239 7 + 198332218 TATCTGT
i ponAbe2.chr4                     T 391 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 109 - 135778131 T
e papAnu2.chr5                        269239 58 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=16204.000000
s hg38.chr4_KI270925v1_alt            333166 34 +    555799 TACTAAAGGGAGCTCACGTGACATCAAAAACGAA
s panTro4.chr4_AACZ03155287_random     30353 34 -     33815 TACTAAAGGGAGCTCACGCGACATCAGCAAGGAA
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129246 34 + 198332218 TACTAAAGGGAGCTCACGTGACATCAACAAGGAA
i ponAbe2.chr4                     C 0 I 170
s papAnu2.chr5                        269181 34 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAGGAA
i papAnu2.chr5                     T 58 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 109 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=6613.000000
s hg38.chr4_KI270925v1_alt            333200 23 +    555799 ACACACTTAGTCCTTC-TATCTGT
s panTro4.chr4_AACZ03155287_random     30387 19 -     33815 ACACACTTAGTCCT-----TCTGT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129450 23 + 198332218 ACACACTTACTCCCTC-TATCTGT
i ponAbe2.chr4                     I 170 C 0
s papAnu2.chr5                        269215 24 - 178775436 ATGCACTTAGTCCTTTGTATCTGT
i papAnu2.chr5                     C 0 T 58
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 109 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=4924.000000
s hg38.chr4_KI270925v1_alt            333223 19 +    555799 TACTAAAGGGAGCTCACGC
s panTro4.chr4_AACZ03155287_random     30406 19 -     33815 TACTAAAGGGAGCTCACGT
i panTro4.chr4_AACZ03155287_random C 0 I 267
s ponAbe2.chr4                     198129473 19 + 198332218 TACTAAAGGGAGCTCATGT
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 109 - 135778131 T
e papAnu2.chr5                        269239 58 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=1801.000000
s hg38.chr4_KI270925v1_alt            333242 19 +    555799 GACATCAACAAGGAAACAC
s ponAbe2.chr4                     198129492 19 + 198332218 GACATCAACAAGGAAACAC
i ponAbe2.chr4                     C 0 T 280
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 109 - 135778131 T
e papAnu2.chr5                        269239 58 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I
e panTro4.chr4_AACZ03155287_random     30425 267 -     33815 I

a score=1297.000000
s hg38.chr4_KI270925v1_alt            333261 15 +    555799 AGTCCTTCTATCTGT
s ponAbe2.chr4                     198129231 15 + 198332218 AGTCCCTCTATCTGT
i ponAbe2.chr4                     T 280 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 109 - 135778131 T
e papAnu2.chr5                        269239 58 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I
e panTro4.chr4_AACZ03155287_random     30425 267 -     33815 I

a score=12993.000000
s hg38.chr4_KI270925v1_alt            333276 57 +    555799 TACTAAAGGGAGCTCACGTGACATCAACAAGGAAACAAACTTAGTCCTTC-TATCCGT
s ponAbe2.chr4                     198129246 57 + 198332218 TACTAAAGGGAGCTCACGTGACATCAACAAGGAAACACACTTAGTCCTTC-TATCTGT
i ponAbe2.chr4                     C 0 C 0
s papAnu2.chr5                        269181 58 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAGGAAATGCACTTAGTCCTTTGTATCTGT
i papAnu2.chr5                     T 58 T 58
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 109 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I
e panTro4.chr4_AACZ03155287_random     30425 267 -     33815 I

a score=9424.000000
s hg38.chr4_KI270925v1_alt            333333 57 +    555799 TACTAAAGTGAGCTCATGTGACATCAACAAGGAAACACAG--TTAGTCCTTC-TATCTGT
s ponAbe2.chr4                     198129303 55 + 198332218 CACTAAAGCAAGCTCACGTGACATCAACAAGGAAACACACACTTAGTCCTTC-T----GT
i ponAbe2.chr4                     C 0 C 0
s papAnu2.chr5                        269181 58 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAGGAAATGCAC--TTAGTCCTTTGTATCTGT
i papAnu2.chr5                     T 58 T 58
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 109 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I
e panTro4.chr4_AACZ03155287_random     30425 267 -     33815 I

a score=8806.000000
s hg38.chr4_KI270925v1_alt            333390 113 +    555799 TACTAAAGCAAGCTCACCTGACAACAACAAGAAAATACACACTTAGTCCTTTGTATCTGTTACTCAAGCGAGCTCATGACATCAACAAGGAAACACACACTTACTCCTTCT----GT
s ponAbe2.chr4                     198129358 115 + 198332218 TACTAAAGCGAGCTCACCTGACATCAACAAGAAAATACAC--TTAGTCCTTTGTATCTGTTACTCAAGCGAGCTTGTGACATCAACAAGGAAACACACACTTACTCCCTCTATCTGT
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 109 - 135778131 T
e papAnu2.chr5                        269239  58 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862   0 - 115148730 I
e panTro4.chr4_AACZ03155287_random     30425 267 -     33815 I

a score=9823.000000
s hg38.chr4_KI270925v1_alt            333503 36 +    555799 TACTAAAGGGAGCTCATGTGACATCAACAAGGAAAC
s ponAbe2.chr4                     198129473 36 + 198332218 TACTAAAGGGAGCTCATGTGACATCAACAAGGAAAC
i ponAbe2.chr4                     C 0 I 59
s chlSab2.chr7                        327200 36 - 135778131 tactaaagggagCTCATGTGACATCCACAAGGAAAC
i chlSab2.chr7                     T 109 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e papAnu2.chr5                        269239 58 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I
e panTro4.chr4_AACZ03155287_random     30425 267 -     33815 I

a score=6072.000000
s hg38.chr4_KI270925v1_alt            333539 23 +    555799 ACACAGTTAGTCCTTCTATCTGT
s ponAbe2.chr4                     198129568 23 + 198332218 ACACACTTAGTCCTTCTATCTGT
i ponAbe2.chr4                     I 59 C 0
s chlSab2.chr7                        327236 23 - 135778131 ACACACTTAGTCCTTCTATCTGT
i chlSab2.chr7                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e papAnu2.chr5                        269239 58 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I
e panTro4.chr4_AACZ03155287_random     30425 267 -     33815 I

a score=5128.000000
s hg38.chr4_KI270925v1_alt            333562 11 +    555799 TGCTAAAGGGA
s ponAbe2.chr4                     198129591 11 + 198332218 TGCTAAAGGGA
i ponAbe2.chr4                     C 0 C 0
s papAnu2.chr5                        269181 11 - 178775436 TACTAACGGGA
i papAnu2.chr5                     T 58 C 0
s chlSab2.chr7                        327259 11 - 135778131 TACTAAAGGGA
i chlSab2.chr7                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I
e panTro4.chr4_AACZ03155287_random     30425 267 -     33815 I

a score=23752.000000
s hg38.chr4_KI270925v1_alt            333573 28 +    555799 GCTCATGTGACATCAACAAGGAAACACA
s panTro4.chr4_AACZ03155287_random     30692 28 -     33815 GCTCACGTGACATCAACAAGGAAACACA
i panTro4.chr4_AACZ03155287_random I 267 C 0
s ponAbe2.chr4                     198129602 28 + 198332218 GCTCATGTGACATCAACAAGGAAACACA
i ponAbe2.chr4                     C 0 T 116
s papAnu2.chr5                        269192 28 - 178775436 GCTCATGTGACATCAGCAAGGAAATGCA
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        327270 28 - 135778131 GCTCATGTGACATCCACAAGGAAACAca
i chlSab2.chr7                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=-75.000000
s hg38.chr4_KI270925v1_alt            333601 1 +    555799 G
s ponAbe2.chr4                     198129514 1 + 198332218 C
i ponAbe2.chr4                     T 116 C 0
s papAnu2.chr5                        269220 1 - 178775436 C
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        327298 1 - 135778131 c
i chlSab2.chr7                     C 0 T 99
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e panTro4.chr4_AACZ03155287_random     30720 0 -     33815 C

a score=3091.000000
s hg38.chr4_KI270925v1_alt            333602 10 +    555799 TTTGTCCTTC
s panTro4.chr4_AACZ03155287_random     30720  7 -     33815 ---GTCCTTC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129515 10 + 198332218 TTACTCCTTC
i ponAbe2.chr4                     C 0 C 0
s papAnu2.chr5                        269221 10 - 178775436 TTAGTCCTTT
i papAnu2.chr5                     C 0 T 50
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327299 99 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=8196.000000
s hg38.chr4_KI270925v1_alt            333612 41 +    555799 TATCTGTTATTAAAGGGAGCCCACGCGACATCAACAAGGAA
s panTro4.chr4_AACZ03155287_random     30727 41 -     33815 TATCTGTTAATGAAGCAGGCTCACCTGACGTCAGCAAGAAA
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129525 41 + 198332218 TATCTGTTACTAAAGGGAGCTCACGTGACATCAACAAGGAA
i ponAbe2.chr4                     C 0 T 338
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327299 99 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=282.000000
s hg38.chr4_KI270925v1_alt            333653 5 +    555799 --ACACA
s panTro4.chr4_AACZ03155287_random     30768 7 -     33815 ATATACA
i panTro4.chr4_AACZ03155287_random C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327299 99 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e ponAbe2.chr4                     198129566 338 + 198332218 T

a score=2923.000000
s hg38.chr4_KI270925v1_alt            333658 18 +    555799 ATCAGTCCTTC-TATCTGT
s panTro4.chr4_AACZ03155287_random     30775 19 -     33815 CTTAGTCCTTTGTATCTGT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129228 18 + 198332218 GTTAGTCCCTC-TATCTGT
i ponAbe2.chr4                     T 338 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327299 99 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=14029.000000
s hg38.chr4_KI270925v1_alt            333676 34 +    555799 TACTAAAGGGAGCTCACGTGACATCAGCCAGGAA
s panTro4.chr4_AACZ03155287_random     30794 32 -     33815 TACTCAAGCGAGCT--CGTGACATCAACAAGGAA
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129246 34 + 198332218 TACTAAAGGGAGCTCACGTGACATCAACAAGGAA
i ponAbe2.chr4                     C 0 I 59
s papAnu2.chr5                        269181 34 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAGGAA
i papAnu2.chr5                     T 50 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327299 99 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=4516.000000
s hg38.chr4_KI270925v1_alt            333710 14 +    555799 AC--ACACTTAGTCCT
s panTro4.chr4_AACZ03155287_random     30826 16 -     33815 ACATACACTTACTCCT
i panTro4.chr4_AACZ03155287_random C 0 T 170
s ponAbe2.chr4                     198129339 14 + 198332218 AC--ACACTTAGTCCT
i ponAbe2.chr4                     I 59 T 59
s papAnu2.chr5                        269215 14 - 178775436 --ATGCACTTAGTCCT
i papAnu2.chr5                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327299 99 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=4311.000000
s hg38.chr4_KI270925v1_alt            333724  9 +    555799 -TCTATCTGT
s panTro4.chr4_AACZ03155287_random     30672  9 -     33815 -TCTATCTGT
i panTro4.chr4_AACZ03155287_random T 170 C 0
s ponAbe2.chr4                     198129294  9 + 198332218 -TCTATCTGT
i ponAbe2.chr4                     T 59 C 0
s papAnu2.chr5                        269229 10 - 178775436 TTGTATCTGT
i papAnu2.chr5                     C 0 T 58
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327299 99 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=9109.000000
s hg38.chr4_KI270925v1_alt            333733 38 +    555799 TACTAAAGGGAGTTCACATGACATCAGCAAGGAAACAC
s panTro4.chr4_AACZ03155287_random     30681 38 -     33815 TACTAAAGGGAGCTCACGTGACATCAACAAGGAAACAC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129303 38 + 198332218 CACTAAAGCAAGCTCACGTGACATCAACAAGGAAACAC
i ponAbe2.chr4                     C 0 I 12
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327299 99 - 135778131 T
e papAnu2.chr5                        269239 58 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=451.000000
s hg38.chr4_KI270925v1_alt            333771 6 +    555799 AGCCCT
s panTro4.chr4_AACZ03155287_random     30719 6 -     33815 AGTCCT
i panTro4.chr4_AACZ03155287_random C 0 I 117
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327299 99 - 135778131 T
e papAnu2.chr5                        269239 58 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e ponAbe2.chr4                     198129341 12 + 198332218 I

a score=0.000000
s hg38.chr4_KI270925v1_alt            333777 4 +    555799 TCTA
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327299 99 - 135778131 T
e papAnu2.chr5                        269239 58 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e ponAbe2.chr4                     198129341 12 + 198332218 I
e panTro4.chr4_AACZ03155287_random     30725 117 -     33815 I

a score=8717.000000
s hg38.chr4_KI270925v1_alt            333781 43 +    555799 TCTGTTACTAAAGGGAGCTCACGCGACATCAACAAGGAA--ACAC
s panTro4.chr4_AACZ03155287_random     30842 45 -     33815 TCTGTTGCTAAAGGGAGCTCATGCGAGATCAACAAGGAAACACAC
i panTro4.chr4_AACZ03155287_random I 117 C 0
s ponAbe2.chr4                     198129353 43 + 198332218 TCTGTTACTAAAGCGAGCTCACCTGACATCAACAAGAAA--ATAC
i ponAbe2.chr4                     I 12 T 165
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327299 99 - 135778131 T
e papAnu2.chr5                        269239 58 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=13919.000000
s hg38.chr4_KI270925v1_alt            333824 54 +    555799 AGTCCTTCTATCTGTTACTAAAGCGAGCTCACATGACATCAACAAGGAAACACA
s panTro4.chr4_AACZ03155287_random     30887 54 -     33815 AGTCCTTCTATCTGTTGCTAAAGGGAGCTCACGTGACATCAGCAAGGAAACACA
i panTro4.chr4_AACZ03155287_random C 0 T 871
s ponAbe2.chr4                     198129231 54 + 198332218 AGTCCCTCTATCTGTTACTAAAGGGAGCTCACGTGACATCAACAAGGAAACACA
i ponAbe2.chr4                     T 165 T 99
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327299 99 - 135778131 T
e papAnu2.chr5                        269239 58 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=0.000000
s hg38.chr4_KI270925v1_alt            333878 10 +    555799 GTTAGTCCCT
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327299 99 - 135778131 T
e papAnu2.chr5                        269239 58 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I
e ponAbe2.chr4                     198129285 99 + 198332218 T
e panTro4.chr4_AACZ03155287_random     30941 871 -     33815 T

a score=-139.000000
s hg38.chr4_KI270925v1_alt            333888 3 +    555799 CTC-
s panTro4.chr4_AACZ03155287_random     30070 4 -     33815 CTCA
i panTro4.chr4_AACZ03155287_random T 871 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327299 99 - 135778131 T
e papAnu2.chr5                        269239 58 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e ponAbe2.chr4                     198129285 99 + 198332218 T

a score=1419.000000
s hg38.chr4_KI270925v1_alt            333891 5 +    555799 TCTGT
s panTro4.chr4_AACZ03155287_random     30074 5 -     33815 TCTGT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129186 5 + 198332218 TCTGT
i ponAbe2.chr4                     T 99 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327299 99 - 135778131 T
e papAnu2.chr5                        269239 58 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=16636.000000
s hg38.chr4_KI270925v1_alt            333896 38 +    555799 TACTAAAGCGAGCTCACGTGACATCAACAAGGAAACAC
s panTro4.chr4_AACZ03155287_random     30079 38 -     33815 TACTAAAGCGAGCTCACGCGACATCAACAAGGAAACAC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129191 38 + 198332218 TACTAAAGCAAGCTCACCTGACATCAGCAAGGAAACAG
i ponAbe2.chr4                     C 0 T 55
s papAnu2.chr5                        269181 38 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAGGAAATGC
i papAnu2.chr5                     T 58 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327299 99 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=123.000000
s hg38.chr4_KI270925v1_alt            333934 2 +    555799 AC
s panTro4.chr4_AACZ03155287_random     30117 2 -     33815 AG
i panTro4.chr4_AACZ03155287_random C 0 C 0
s papAnu2.chr5                        269219 2 - 178775436 AC
i papAnu2.chr5                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327299 99 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e ponAbe2.chr4                     198129229 55 + 198332218 T

a score=5283.000000
s hg38.chr4_KI270925v1_alt            333936 10 +    555799 TTAGTCCTTC
s panTro4.chr4_AACZ03155287_random     30119 10 -     33815 TTAGTCCTTC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129174 10 + 198332218 TTAGTCCTTC
i ponAbe2.chr4                     T 55 C 0
s papAnu2.chr5                        269221 10 - 178775436 TTAGTCCTTT
i papAnu2.chr5                     C 0 T 50
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327299 99 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=1721.000000
s hg38.chr4_KI270925v1_alt            333946 7 +    555799 TATCTGT
s panTro4.chr4_AACZ03155287_random     30129 7 -     33815 TACCTGT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129184 7 + 198332218 TATCTGT
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327299 99 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=21017.000000
s hg38.chr4_KI270925v1_alt            333953 50 +    555799 TACTAAAGGGAGTTCACGTGACATCAGCAAGGAAACACAGTTAGTCCTTC
s panTro4.chr4_AACZ03155287_random     30136 50 -     33815 TACTAAAGGGAGCTCACGCGACATCAGCAAGGAAACACAGTTAGTCCTTC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129191 48 + 198332218 TACTAAAGCAAGCTCACCTGACATCAGCAAGGAA--ACAGTTAGTCCCTC
i ponAbe2.chr4                     C 0 C 0
s papAnu2.chr5                        269181 50 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAGGAAATGCACTTAGTCCTTT
i papAnu2.chr5                     T 50 T 50
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327299 99 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=1721.000000
s hg38.chr4_KI270925v1_alt            334003 7 +    555799 TATCTGT
s panTro4.chr4_AACZ03155287_random     30186 7 -     33815 TACCTGT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129239 7 + 198332218 TATCTGT
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327299 99 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=15318.000000
s hg38.chr4_KI270925v1_alt            334010 31 +    555799 TACTAAAGGGAGCTCACGAGACATCAACAAG
s panTro4.chr4_AACZ03155287_random     30193 31 -     33815 TACTAAAGGGAGCTCACGCGACATCAGCAAG
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129246 31 + 198332218 TACTAAAGGGAGCTCACGTGACATCAACAAG
i ponAbe2.chr4                     C 0 I 291
s papAnu2.chr5                        269181 31 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAG
i papAnu2.chr5                     T 50 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327299 99 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=846.000000
s hg38.chr4_KI270925v1_alt            334041 3 +    555799 GAA
s panTro4.chr4_AACZ03155287_random     30224 3 -     33815 GAA
i panTro4.chr4_AACZ03155287_random C 0 C 0
s papAnu2.chr5                        269212 3 - 178775436 GAA
i papAnu2.chr5                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327299 99 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e ponAbe2.chr4                     198129277 291 + 198332218 I

a score=6534.000000
s hg38.chr4_KI270925v1_alt            334044 14 +    555799 ACACAGTTAGTCCT
s panTro4.chr4_AACZ03155287_random     30227 14 -     33815 ACACACTTAGTCCT
i panTro4.chr4_AACZ03155287_random C 0 T 278
s ponAbe2.chr4                     198129568 14 + 198332218 ACACACTTAGTCCT
i ponAbe2.chr4                     I 291 C 0
s papAnu2.chr5                        269215 14 - 178775436 ATGCACTTAGTCCT
i papAnu2.chr5                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327299 99 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=753.000000
s hg38.chr4_KI270925v1_alt            334058 2 +    555799 TC
s panTro4.chr4_AACZ03155287_random     29963 2 -     33815 TC
i panTro4.chr4_AACZ03155287_random T 278 C 0
s ponAbe2.chr4                     198129582 2 + 198332218 TC
i ponAbe2.chr4                     C 0 C 0
s papAnu2.chr5                        269229 2 - 178775436 TT
i papAnu2.chr5                     C 0 T 50
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327299 99 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=1965.000000
s hg38.chr4_KI270925v1_alt            334060 7 +    555799 TATCTGT
s panTro4.chr4_AACZ03155287_random     29965 7 -     33815 TATCTGT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129584 7 + 198332218 TATCTGT
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327299 99 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=16730.000000
s hg38.chr4_KI270925v1_alt            334067 34 +    555799 TACTAAAGGGAGCTCAAGTGACATCAACAAGGAA
s panTro4.chr4_AACZ03155287_random     29972 34 -     33815 TACTAAAGGGAGCTCACGCGACATCAACAAGGAA
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129591 34 + 198332218 TGCTAAAGGGAGCTCATGTGACATCAACAAGGAA
i ponAbe2.chr4                     C 0 T 116
s papAnu2.chr5                        269181 34 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAGGAA
i papAnu2.chr5                     T 50 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327299 99 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=7287.000000
s hg38.chr4_KI270925v1_alt            334101 16 +    555799 ACACACTTAGTCCTTC
s panTro4.chr4_AACZ03155287_random     30006 16 -     33815 ACACACTTAGTCCTTC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129509 16 + 198332218 ACACACTTACTCCTTC
i ponAbe2.chr4                     T 116 C 0
s papAnu2.chr5                        269215 16 - 178775436 ATGCACTTAGTCCTTT
i papAnu2.chr5                     C 0 T 50
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327299 99 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=302.000000
s hg38.chr4_KI270925v1_alt            334117 2 +    555799 CA
s panTro4.chr4_AACZ03155287_random     30022 2 -     33815 TA
i panTro4.chr4_AACZ03155287_random C 0 I 217
s ponAbe2.chr4                     198129525 2 + 198332218 TA
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327299 99 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=11444.000000
s hg38.chr4_KI270925v1_alt            334119 41 +    555799 TCTGTTACTAAAGGGAGCTCACGTGACATCAGCAAGGAAAC
s panTro4.chr4_AACZ03155287_random     30241 41 -     33815 TCTGTTACTAAAGGGAGCTCACGTGACATCAGCAAGGAAAC
i panTro4.chr4_AACZ03155287_random I 217 C 0
s ponAbe2.chr4                     198129527 41 + 198332218 TCTGTTACTAAAGGGAGCTCACGTGACATCAACAAGGAAAC
i ponAbe2.chr4                     C 0 T 104
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327299 99 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=573.000000
s hg38.chr4_KI270925v1_alt            334160 6 +    555799 ACAGTC
s panTro4.chr4_AACZ03155287_random     30282 6 -     33815 ACAGTC
i panTro4.chr4_AACZ03155287_random C 0 I 160
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327299 99 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e ponAbe2.chr4                     198129568 104 + 198332218 T

a score=191.000000
s hg38.chr4_KI270925v1_alt            334166 2 +    555799 CT
s panTro4.chr4_AACZ03155287_random     30448 2 -     33815 CT
i panTro4.chr4_AACZ03155287_random I 160 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327299 99 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e ponAbe2.chr4                     198129568 104 + 198332218 T

a score=10224.000000
s hg38.chr4_KI270925v1_alt            334168 49 +    555799 TCTATCTATTACTAAACGGAGCTCACGTGACATCAGCAAGGAAACACAG---------
s panTro4.chr4_AACZ03155287_random     30450 49 -     33815 TCTATCTGTTACTAAAGCGAGCTCACATGACATCAACAAGGAAACACAG---------
i panTro4.chr4_AACZ03155287_random C 0 I 57
s ponAbe2.chr4                     198129464 58 + 198332218 TCTATCTGTTACTAAAGGGAGCTCATGTGACATCAACAAGGAAACACACACTTACTCC
i ponAbe2.chr4                     T 104 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327299 99 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=1538.000000
s hg38.chr4_KI270925v1_alt            334217 10 +    555799 TC---CTATCTGT
s panTro4.chr4_AACZ03155287_random     30556 13 -     33815 TCCTTCTATCTGT
i panTro4.chr4_AACZ03155287_random I 57 C 0
s ponAbe2.chr4                     198129522 10 + 198332218 ---TTCTATCTGT
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327299 99 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=20799.000000
s hg38.chr4_KI270925v1_alt            334227 31 +    555799 TACTAAAGGGAGCTCACGTGACATCAAAAAC
s panTro4.chr4_AACZ03155287_random     30569 29 -     33815 TACTAAAGCGAGCTCACATGAC--CAACAAG
i panTro4.chr4_AACZ03155287_random C 0 I 57
s ponAbe2.chr4                     198129532 31 + 198332218 TACTAAAGGGAGCTCACGTGACATCAACAAG
i ponAbe2.chr4                     C 0 T 286
s papAnu2.chr5                        269181 31 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAG
i papAnu2.chr5                     T 50 C 0
s chlSab2.chr7                        327200 31 - 135778131 tactaaagggagCTCATGTGACATCCACAAG
i chlSab2.chr7                     T 99 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=2820.000000
s hg38.chr4_KI270925v1_alt            334258 3 +    555799 GAA
s panTro4.chr4_AACZ03155287_random     30655 3 -     33815 GAA
i panTro4.chr4_AACZ03155287_random I 57 C 0
s ponAbe2.chr4                     198129277 3 + 198332218 GAA
i ponAbe2.chr4                     T 286 I 229
s papAnu2.chr5                        269212 3 - 178775436 GAA
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        327231 3 - 135778131 GAA
i chlSab2.chr7                     C 0 I 2
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=12754.000000
s hg38.chr4_KI270925v1_alt            334261 16 +    555799 ACACACTTAGTCCTTC
s panTro4.chr4_AACZ03155287_random     30658 16 -     33815 ACACACTTAGTCCTTC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129509 16 + 198332218 ACACACTTACTCCTTC
i ponAbe2.chr4                     I 229 C 0
s papAnu2.chr5                        269215 16 - 178775436 ATGCACTTAGTCCTTT
i papAnu2.chr5                     C 0 T 50
s chlSab2.chr7                        327236 16 - 135778131 ACACACTTAGTCCTTC
i chlSab2.chr7                     I 2 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=23442.000000
s hg38.chr4_KI270925v1_alt            334277 43 +    555799 TATCTGTTACTAAAGGGAGCTCACGTGACATCAACAAGGAAAC
s panTro4.chr4_AACZ03155287_random     30674 43 -     33815 TATCTGTTACTAAAGGGAGCTCACGTGACATCAACAAGGAAAC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129525 43 + 198332218 TATCTGTTACTAAAGGGAGCTCACGTGACATCAACAAGGAAAC
i ponAbe2.chr4                     C 0 T 279
s chlSab2.chr7                        327252 43 - 135778131 TATCTGTTACTAAAGGGAGCTCATGTGACATCCACAAGGAAAC
i chlSab2.chr7                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=846.000000
s hg38.chr4_KI270925v1_alt            334320 3 +    555799 ACA
s panTro4.chr4_AACZ03155287_random     30717 3 -     33815 ACA
i panTro4.chr4_AACZ03155287_random C 0 C 0
s chlSab2.chr7                        327295 3 - 135778131 Aca
i chlSab2.chr7                     C 0 T 56
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e ponAbe2.chr4                     198129568 279 + 198332218 T

a score=3984.000000
s hg38.chr4_KI270925v1_alt            334323 14 +    555799 GTCCTTCTATCTGT
s panTro4.chr4_AACZ03155287_random     30720 14 -     33815 GTCCTTCTATCTGT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129289 14 + 198332218 GTCCTTCTATCTGT
i ponAbe2.chr4                     T 279 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=13280.000000
s hg38.chr4_KI270925v1_alt            334337 34 +    555799 TACTAAAGGGAGCTCACGTGACATCAACAAGGAA
s panTro4.chr4_AACZ03155287_random     30734 34 -     33815 TAATGAAGCAGGCTCACCTGACGTCAGCAAGAAA
i panTro4.chr4_AACZ03155287_random C 0 T 53
s ponAbe2.chr4                     198129303 34 + 198332218 CACTAAAGCAAGCTCACGTGACATCAACAAGGAA
i ponAbe2.chr4                     C 0 I 2
s papAnu2.chr5                        269181 34 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAGGAA
i papAnu2.chr5                     T 50 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=4462.000000
s hg38.chr4_KI270925v1_alt            334371 16 +    555799 ACAAACTTAGTCCTTC
s panTro4.chr4_AACZ03155287_random     30715 12 -     33815 ACA----CAGTCCTTC
i panTro4.chr4_AACZ03155287_random T 53 C 0
s ponAbe2.chr4                     198129339 16 + 198332218 ACACACTTAGTCCTTC
i ponAbe2.chr4                     I 2 C 0
s papAnu2.chr5                        269215 16 - 178775436 ATGCACTTAGTCCTTT
i papAnu2.chr5                     C 0 T 50
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=273.000000
s hg38.chr4_KI270925v1_alt            334387 1 +    555799 T
s panTro4.chr4_AACZ03155287_random     30727 1 -     33815 T
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129355 1 + 198332218 T
i ponAbe2.chr4                     C 0 T 116
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=1448.000000
s hg38.chr4_KI270925v1_alt            334388 6 +    555799 ATCCGT
s panTro4.chr4_AACZ03155287_random     30728 6 -     33815 ATCTGT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129240 6 + 198332218 ATCTGT
i ponAbe2.chr4                     T 116 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=13817.000000
s hg38.chr4_KI270925v1_alt            334394 34 +    555799 TACTAAAGTGAGCTCACGTGACATCAGCAAGGAA
s panTro4.chr4_AACZ03155287_random     30734 34 -     33815 TAATGAAGCAGGCTCACCTGACGTCAGCAAGAAA
i panTro4.chr4_AACZ03155287_random C 0 I 2
s ponAbe2.chr4                     198129246 34 + 198332218 TACTAAAGGGAGCTCACGTGACATCAACAAGGAA
i ponAbe2.chr4                     C 0 C 0
s papAnu2.chr5                        269181 34 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAGGAA
i papAnu2.chr5                     T 50 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=7682.000000
s hg38.chr4_KI270925v1_alt            334428 16 +    555799 ACACACTTAGTCCTTC
s panTro4.chr4_AACZ03155287_random     30770 16 -     33815 ATACACTTAGTCCTTT
i panTro4.chr4_AACZ03155287_random I 2 C 0
s ponAbe2.chr4                     198129280 16 + 198332218 ACACACTTAGTCCTTC
i ponAbe2.chr4                     C 0 C 0
s papAnu2.chr5                        269215 16 - 178775436 ATGCACTTAGTCCTTT
i papAnu2.chr5                     C 0 T 50
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=4711.000000
s hg38.chr4_KI270925v1_alt            334444 21 +    555799 -TATCTGTTACTAAAACGAGCT
s panTro4.chr4_AACZ03155287_random     30786 22 -     33815 GTATCTGTTACTCAAGCGAGCT
i panTro4.chr4_AACZ03155287_random C 0 T 737
s ponAbe2.chr4                     198129296 21 + 198332218 -TATCTGTCACTAAAGCAAGCT
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=1836.000000
s hg38.chr4_KI270925v1_alt            334465 23 +    555799 CACCCGACATCAACAAGGAAACA
s ponAbe2.chr4                     198129317 23 + 198332218 CACGTGACATCAACAAGGAAACA
i ponAbe2.chr4                     C 0 T 165
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I
e panTro4.chr4_AACZ03155287_random     30808 737 -     33815 T

a score=664.000000
s hg38.chr4_KI270925v1_alt            334488 7 +    555799 TAGTCCT
s ponAbe2.chr4                     198129175 7 + 198332218 TAGTCCT
i ponAbe2.chr4                     T 165 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e panTro4.chr4_AACZ03155287_random     30808 737 -     33815 T

a score=77.000000
s hg38.chr4_KI270925v1_alt            334495 4 +    555799 TCTA
s panTro4.chr4_AACZ03155287_random     30071 3 -     33815 TC-A
i panTro4.chr4_AACZ03155287_random T 737 C 0
s ponAbe2.chr4                     198129182 4 + 198332218 TCTA
i ponAbe2.chr4                     C 0 I 55
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=6627.000000
s hg38.chr4_KI270925v1_alt            334499 29 +    555799 TCTGTTACTAAAGGGGGCTCAGGCAACAT
s panTro4.chr4_AACZ03155287_random     30074 29 -     33815 TCTGTTACTAAAGCGAGCTCACGCGACAT
i panTro4.chr4_AACZ03155287_random C 0 I 185
s ponAbe2.chr4                     198129241 29 + 198332218 TCTGTTACTAAAGGGAGCTCACGTGACAT
i ponAbe2.chr4                     I 55 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=1419.000000
s hg38.chr4_KI270925v1_alt            334528 15 +    555799 CAACAAGGAAACACA
s ponAbe2.chr4                     198129270 15 + 198332218 CAACAAGGAAACACA
i ponAbe2.chr4                     C 0 T 57
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I
e panTro4.chr4_AACZ03155287_random     30103 185 -     33815 I

a score=733.000000
s hg38.chr4_KI270925v1_alt            334543 9 +    555799 GTTAGTCCT
s ponAbe2.chr4                     198129228 9 + 198332218 GTTAGTCCC
i ponAbe2.chr4                     T 57 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e panTro4.chr4_AACZ03155287_random     30103 185 -     33815 I

a score=1496.000000
s hg38.chr4_KI270925v1_alt            334552 9 +    555799 TCTATCTGT
s panTro4.chr4_AACZ03155287_random     30288 8 -     33815 TC-ATCTGT
i panTro4.chr4_AACZ03155287_random I 185 C 0
s ponAbe2.chr4                     198129237 9 + 198332218 TCTATCTGT
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=23880.000000
s hg38.chr4_KI270925v1_alt            334561 50 +    555799 TACTAAAGGGGGCTCACGTGACATCAACAAGGAAACACACTTAGTCCTTC
s panTro4.chr4_AACZ03155287_random     30296 50 -     33815 TACTAAAGCGAGCTCACGCGACATCAACAAGGAAACACAGTTAGTCCTTC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129246 50 + 198332218 TACTAAAGGGAGCTCACGTGACATCAACAAGGAAACACACTTAGTCCTTC
i ponAbe2.chr4                     C 0 C 0
s papAnu2.chr5                        269181 50 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAGGAAATGCACTTAGTCCTTT
i papAnu2.chr5                     T 50 T 50
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=1721.000000
s hg38.chr4_KI270925v1_alt            334611 7 +    555799 TATCTGT
s panTro4.chr4_AACZ03155287_random     30346 7 -     33815 TACCTGT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129296 7 + 198332218 TATCTGT
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=15242.000000
s hg38.chr4_KI270925v1_alt            334618 34 +    555799 TACTGAAGGGAGCTCACGCGGCATCAACAAGGAA
s panTro4.chr4_AACZ03155287_random     30353 34 -     33815 TACTAAAGGGAGCTCACGCGACATCAGCAAGGAA
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129303 34 + 198332218 CACTAAAGCAAGCTCACGTGACATCAACAAGGAA
i ponAbe2.chr4                     C 0 T 108
s papAnu2.chr5                        269181 34 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAGGAA
i papAnu2.chr5                     T 50 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=1213.000000
s hg38.chr4_KI270925v1_alt            334652 6 +    555799 ACACAC
s panTro4.chr4_AACZ03155287_random     30387 6 -     33815 ACACAC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s papAnu2.chr5                        269215 6 - 178775436 ATGCAC
i papAnu2.chr5                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e ponAbe2.chr4                     198129337 108 + 198332218 T

a score=4917.000000
s hg38.chr4_KI270925v1_alt            334658 10 +    555799 TTAGTCCTTC
s panTro4.chr4_AACZ03155287_random     30393 10 -     33815 TTAGTCCTTC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129229 10 + 198332218 TTAGTCCCTC
i ponAbe2.chr4                     T 108 C 0
s papAnu2.chr5                        269221 10 - 178775436 TTAGTCCTTT
i papAnu2.chr5                     C 0 T 50
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=179.000000
s hg38.chr4_KI270925v1_alt            334668 7 +    555799 TATCTGT
s panTro4.chr4_AACZ03155287_random     30403 3 -     33815 T----GT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129239 7 + 198332218 TATCTGT
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=18027.000000
s hg38.chr4_KI270925v1_alt            334675 34 +    555799 TACTAAAGGGAGCTCACGTGACATCAGCAAGGAA
s panTro4.chr4_AACZ03155287_random     30406 34 -     33815 TACTAAAGGGAGCTCACGTGACATCAGCAAGGAA
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129246 34 + 198332218 TACTAAAGGGAGCTCACGTGACATCAACAAGGAA
i ponAbe2.chr4                     C 0 I 59
s papAnu2.chr5                        269181 34 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAGGAA
i papAnu2.chr5                     T 50 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=3461.000000
s hg38.chr4_KI270925v1_alt            334709 16 +    555799 ACACACTTAGTCCTTC
s panTro4.chr4_AACZ03155287_random     30440 12 -     33815 ACACA----GTCCTTC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129339 14 + 198332218 ACACACTTAGTCCT--
i ponAbe2.chr4                     I 59 C 0
s papAnu2.chr5                        269215 16 - 178775436 ATGCACTTAGTCCTTT
i papAnu2.chr5                     C 0 T 50
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=1481.000000
s hg38.chr4_KI270925v1_alt            334725 7 +    555799 TATCTGT
s panTro4.chr4_AACZ03155287_random     30452 7 -     33815 TATCTGT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129353 5 + 198332218 --TCTGT
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=23015.000000
s hg38.chr4_KI270925v1_alt            334732 50 +    555799 TACTAAAGCGAGCTCACATGACATCAACAAGGAAACACACTTAGTCCTTC
s panTro4.chr4_AACZ03155287_random     30459 50 -     33815 TACTAAAGCGAGCTCACATGACATCAACAAGGAAACACAGTTAGTCCTTC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129358 50 + 198332218 TACTAAAGCGAGCTCACCTGACATCAACAAGAAAATACACTTAGTCCTTT
i ponAbe2.chr4                     C 0 C 0
s papAnu2.chr5                        269181 50 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAGGAAATGCACTTAGTCCTTT
i papAnu2.chr5                     T 50 T 50
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=1905.000000
s hg38.chr4_KI270925v1_alt            334782 7 +    555799 -TATCTGT
s panTro4.chr4_AACZ03155287_random     30509 7 -     33815 -TATCTGT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129408 8 + 198332218 GTATCTGT
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=14025.000000
s hg38.chr4_KI270925v1_alt            334789 34 +    555799 TACTAAAGGGAGCTCACGCGACATCAACAAGGAA
s panTro4.chr4_AACZ03155287_random     30516 34 -     33815 TACTAAAGGGAGCTCACGCGACATCAGCAAGGAA
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129416 32 + 198332218 TACTCAAGCGAGCT--TGTGACATCAACAAGGAA
i ponAbe2.chr4                     C 0 T 161
s papAnu2.chr5                        269181 34 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAGGAA
i papAnu2.chr5                     T 50 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=640.000000
s hg38.chr4_KI270925v1_alt            334823 4 +    555799 ACAC
s panTro4.chr4_AACZ03155287_random     30550 4 -     33815 ACAC
i panTro4.chr4_AACZ03155287_random C 0 I 331
s papAnu2.chr5                        269215 4 - 178775436 ATGC
i papAnu2.chr5                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e ponAbe2.chr4                     198129448 161 + 198332218 T

a score=-196.000000
s hg38.chr4_KI270925v1_alt            334827 3 +    555799 ACT
s panTro4.chr4_AACZ03155287_random     30885 2 -     33815 AC-
i panTro4.chr4_AACZ03155287_random I 331 C 0
s papAnu2.chr5                        269219 3 - 178775436 ACT
i papAnu2.chr5                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e ponAbe2.chr4                     198129448 161 + 198332218 T

a score=4374.000000
s hg38.chr4_KI270925v1_alt            334830 9 +    555799 TAGTCCTTC
s panTro4.chr4_AACZ03155287_random     30887 8 -     33815 -AGTCCTTC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129287 9 + 198332218 TAGTCCTTC
i ponAbe2.chr4                     T 161 C 0
s papAnu2.chr5                        269222 9 - 178775436 TAGTCCTTT
i papAnu2.chr5                     C 0 T 50
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=10118.000000
s hg38.chr4_KI270925v1_alt            334839 43 +    555799 TATCTGTTACTAAAGGGAGTTCACGTGACCTCAGCAAGGAAAC
s panTro4.chr4_AACZ03155287_random     30895 43 -     33815 TATCTGTTGCTAAAGGGAGCTCACGTGACATCAGCAAGGAAAC
i panTro4.chr4_AACZ03155287_random C 0 T 221
s ponAbe2.chr4                     198129296 43 + 198332218 TATCTGTCACTAAAGCAAGCTCACGTGACATCAACAAGGAAAC
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=573.000000
s hg38.chr4_KI270925v1_alt            334882 2 +    555799 AC
s panTro4.chr4_AACZ03155287_random     30717 2 -     33815 AC
i panTro4.chr4_AACZ03155287_random T 221 T 435
s ponAbe2.chr4                     198129339 2 + 198332218 AC
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=843.000000
s hg38.chr4_KI270925v1_alt            334884 7 +    555799 AGTCTTA
s panTro4.chr4_AACZ03155287_random     30284 7 -     33815 AGTCTCA
i panTro4.chr4_AACZ03155287_random T 435 C 0
s ponAbe2.chr4                     198129341 7 + 198332218 ACACTTA
i ponAbe2.chr4                     C 0 T 162
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=1419.000000
s hg38.chr4_KI270925v1_alt            334891 5 +    555799 TCTGT
s panTro4.chr4_AACZ03155287_random     30291 5 -     33815 TCTGT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129186 5 + 198332218 TCTGT
i ponAbe2.chr4                     T 162 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=15769.000000
s hg38.chr4_KI270925v1_alt            334896 38 +    555799 TACTAAAGTGAGCTCACATGACATCAACAAGGAAATAG
s panTro4.chr4_AACZ03155287_random     30296 38 -     33815 TACTAAAGCGAGCTCACGCGACATCAACAAGGAAACAC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129191 38 + 198332218 TACTAAAGCAAGCTCACCTGACATCAGCAAGGAAACAG
i ponAbe2.chr4                     C 0 C 0
s papAnu2.chr5                        269181 38 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAGGAAATGC
i papAnu2.chr5                     T 50 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=123.000000
s hg38.chr4_KI270925v1_alt            334934 2 +    555799 AC
s panTro4.chr4_AACZ03155287_random     30334 2 -     33815 AG
i panTro4.chr4_AACZ03155287_random C 0 C 0
s papAnu2.chr5                        269219 2 - 178775436 AC
i papAnu2.chr5                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e ponAbe2.chr4                     198129229 0 + 198332218 C

a score=1092.000000
s hg38.chr4_KI270925v1_alt            334936 2 +    555799 TT
s panTro4.chr4_AACZ03155287_random     30336 2 -     33815 TT
i panTro4.chr4_AACZ03155287_random C 0 I 381
s ponAbe2.chr4                     198129229 2 + 198332218 TT
i ponAbe2.chr4                     C 0 C 0
s papAnu2.chr5                        269221 2 - 178775436 TT
i papAnu2.chr5                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=3825.000000
s hg38.chr4_KI270925v1_alt            334938 8 +    555799 AGTCCTTC
s panTro4.chr4_AACZ03155287_random     30719 8 -     33815 AGTCCTTC
i panTro4.chr4_AACZ03155287_random I 381 C 0
s ponAbe2.chr4                     198129231 8 + 198332218 AGTCCCTC
i ponAbe2.chr4                     C 0 C 0
s papAnu2.chr5                        269223 8 - 178775436 AGTCCTTT
i papAnu2.chr5                     C 0 T 50
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=8292.000000
s hg38.chr4_KI270925v1_alt            334946 41 +    555799 TATCTGTTGCTAAAGGGGGCTCACGTGACTTCAACAAGGAA
s panTro4.chr4_AACZ03155287_random     30727 41 -     33815 TATCTGTTAATGAAGCAGGCTCACCTGACGTCAGCAAGAAA
i panTro4.chr4_AACZ03155287_random C 0 I 170
s ponAbe2.chr4                     198129239 41 + 198332218 TATCTGTTACTAAAGGGAGCTCACGTGACATCAACAAGGAA
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=1419.000000
s hg38.chr4_KI270925v1_alt            334987 5 +    555799 ACACA
s panTro4.chr4_AACZ03155287_random     30938 5 -     33815 ACAca
i panTro4.chr4_AACZ03155287_random I 170 C 0
s ponAbe2.chr4                     198129280 5 + 198332218 ACACA
i ponAbe2.chr4                     C 0 T 111
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=100.000000
s hg38.chr4_KI270925v1_alt            334992 1 +    555799 G
s panTro4.chr4_AACZ03155287_random     30943 1 -     33815 g
i panTro4.chr4_AACZ03155287_random C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e ponAbe2.chr4                     198129285 111 + 198332218 T

a score=2538.000000
s hg38.chr4_KI270925v1_alt            334993 9 +    555799 TTAGTCCTT
s panTro4.chr4_AACZ03155287_random     30944 9 -     33815 ttagtcctt
i panTro4.chr4_AACZ03155287_random C 0 T 168
s ponAbe2.chr4                     198129174 9 + 198332218 TTAGTCCTT
i ponAbe2.chr4                     T 111 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=889.000000
s hg38.chr4_KI270925v1_alt            335002 8 +    555799 C-TATCTGT
s panTro4.chr4_AACZ03155287_random     30785 9 -     33815 TGTATCTGT
i panTro4.chr4_AACZ03155287_random T 168 C 0
s ponAbe2.chr4                     198129183 8 + 198332218 -CTATCTGT
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=12878.000000
s hg38.chr4_KI270925v1_alt            335010 37 +    555799 TACTAAAGCGAGCTCACATGACATCAACAAGGAAAC--A
s panTro4.chr4_AACZ03155287_random     30794 37 -     33815 TACTCAAGCGAGCT--CGTGACATCAACAAGGAAACATA
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129191 37 + 198332218 TACTAAAGCAAGCTCACCTGACATCAGCAAGGAAAC--A
i ponAbe2.chr4                     C 0 I 1
s papAnu2.chr5                        269181 37 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAGGAAAT--G
i papAnu2.chr5                     T 50 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=873.000000
s hg38.chr4_KI270925v1_alt            335047 3 +    555799 CAC
s panTro4.chr4_AACZ03155287_random     30831 3 -     33815 CAC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s papAnu2.chr5                        269218 3 - 178775436 CAC
i papAnu2.chr5                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e ponAbe2.chr4                     198129228 1 + 198332218 I

a score=2420.000000
s hg38.chr4_KI270925v1_alt            335050 10 +    555799 TTAGTCCTTC
s panTro4.chr4_AACZ03155287_random     30834  8 -     33815 TTACTCCT--
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129229 10 + 198332218 TTAGTCCCTC
i ponAbe2.chr4                     I 1 C 0
s papAnu2.chr5                        269221 10 - 178775436 TTAGTCCTTT
i papAnu2.chr5                     C 0 T 50
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=1481.000000
s hg38.chr4_KI270925v1_alt            335060 7 +    555799 TATCTGT
s panTro4.chr4_AACZ03155287_random     30842 5 -     33815 --TCTGT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129239 7 + 198332218 TATCTGT
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=17800.000000
s hg38.chr4_KI270925v1_alt            335067 39 +    555799 TACTAAAGGGGGCTCACGTGGCATCAACAAGGAAACACA
s panTro4.chr4_AACZ03155287_random     30847 39 -     33815 TGCTAAAGGGAGCTCATGCGAGATCAACAAGGAAACACA
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129246 39 + 198332218 TACTAAAGGGAGCTCACGTGACATCAACAAGGAAACACA
i ponAbe2.chr4                     C 0 T 57
s papAnu2.chr5                        269181 39 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAGGAAATGCA
i papAnu2.chr5                     T 50 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=3948.000000
s hg38.chr4_KI270925v1_alt            335106 11 +    555799 GTTAGTCCTTC
s panTro4.chr4_AACZ03155287_random     30886  9 -     33815 --CAGTCCTTC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129228 11 + 198332218 GTTAGTCCCTC
i ponAbe2.chr4                     T 57 C 0
s papAnu2.chr5                        269220 11 - 178775436 CTTAGTCCTTT
i papAnu2.chr5                     C 0 T 50
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=1965.000000
s hg38.chr4_KI270925v1_alt            335117 7 +    555799 TATCTGT
s panTro4.chr4_AACZ03155287_random     30895 7 -     33815 TATCTGT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129239 7 + 198332218 TATCTGT
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=17739.000000
s hg38.chr4_KI270925v1_alt            335124 36 +    555799 TACTAAAGCGAGCTCACGTGACATCAGCAAGGAAAC
s panTro4.chr4_AACZ03155287_random     30902 36 -     33815 TGCTAAAGGGAGCTCACGTGACATCAGCAAGGAAAC
i panTro4.chr4_AACZ03155287_random C 0 T 443
s ponAbe2.chr4                     198129246 36 + 198332218 TACTAAAGGGAGCTCACGTGACATCAACAAGGAAAC
i ponAbe2.chr4                     C 0 C 0
s papAnu2.chr5                        269181 36 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAGGAAAT
i papAnu2.chr5                     T 50 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=6534.000000
s hg38.chr4_KI270925v1_alt            335160 14 +    555799 ACACTTAGTCCTTC
s panTro4.chr4_AACZ03155287_random     30495 14 -     33815 ACAGTTAGTCCTTC
i panTro4.chr4_AACZ03155287_random T 443 C 0
s ponAbe2.chr4                     198129282 14 + 198332218 ACACTTAGTCCTTC
i ponAbe2.chr4                     C 0 C 0
s papAnu2.chr5                        269217 14 - 178775436 GCACTTAGTCCTTT
i papAnu2.chr5                     C 0 T 50
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=9229.000000
s hg38.chr4_KI270925v1_alt            335174 45 +    555799 TATCTGTTACTAAAACGAGCTCACCCGACATCAACAAGGAAACAT------
s panTro4.chr4_AACZ03155287_random     30509 45 -     33815 TATCTGTTACTAAAGGGAGCTCACGCGACATCAGCAAGGAAACAC------
i panTro4.chr4_AACZ03155287_random C 0 T 369
s ponAbe2.chr4                     198129296 51 + 198332218 TATCTGTCACTAAAGCAAGCTCACGTGACATCAACAAGGAAACACACACTT
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=573.000000
s hg38.chr4_KI270925v1_alt            335219 6 +    555799 AGTCCT
s ponAbe2.chr4                     198129347 6 + 198332218 AGTCCT
i ponAbe2.chr4                     C 0 T 116
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e panTro4.chr4_AACZ03155287_random     30554 369 -     33815 T

a score=3948.000000
s hg38.chr4_KI270925v1_alt            335225 48 +    555799 TCTATCTGTTACTAAAGGGGGCTCAGGCAACATCAACAAGGAAACACA
s ponAbe2.chr4                     198129237 48 + 198332218 TCTATCTGTTACTAAAGGGAGCTCACGTGACATCAACAAGGAAACACA
i ponAbe2.chr4                     T 116 T 57
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I
e panTro4.chr4_AACZ03155287_random     30554 369 -     33815 T

a score=824.000000
s hg38.chr4_KI270925v1_alt            335273 10 +    555799 GTTAGTCCTT
s ponAbe2.chr4                     198129228 10 + 198332218 GTTAGTCCCT
i ponAbe2.chr4                     T 57 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I
e panTro4.chr4_AACZ03155287_random     30554 369 -     33815 T

a score=2021.000000
s hg38.chr4_KI270925v1_alt            335283 8 +    555799 CTATCTGT
s panTro4.chr4_AACZ03155287_random     30185 8 -     33815 CTACCTGT
i panTro4.chr4_AACZ03155287_random T 369 C 0
s ponAbe2.chr4                     198129238 8 + 198332218 CTATCTGT
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=24364.000000
s hg38.chr4_KI270925v1_alt            335291 48 +    555799 TACTAAAGGGGGCTCACGTGACATCAACAAGGAAACACACTTAGTCCT
s panTro4.chr4_AACZ03155287_random     30193 48 -     33815 TACTAAAGGGAGCTCACGCGACATCAGCAAGGAAACACACTTAGTCCT
i panTro4.chr4_AACZ03155287_random C 0 I 601
s ponAbe2.chr4                     198129246 48 + 198332218 TACTAAAGGGAGCTCACGTGACATCAACAAGGAAACACACTTAGTCCT
i ponAbe2.chr4                     C 0 C 0
s papAnu2.chr5                        269181 48 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAGGAAATGCACTTAGTCCT
i papAnu2.chr5                     T 50 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=311.000000
s hg38.chr4_KI270925v1_alt            335339 2 +    555799 TC
s ponAbe2.chr4                     198129294 2 + 198332218 TC
i ponAbe2.chr4                     C 0 C 0
s papAnu2.chr5                        269229 2 - 178775436 TT
i papAnu2.chr5                     C 0 T 50
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e panTro4.chr4_AACZ03155287_random     30241 601 -     33815 I

a score=182.000000
s hg38.chr4_KI270925v1_alt            335341 2 +    555799 TA
s ponAbe2.chr4                     198129296 2 + 198332218 TA
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e panTro4.chr4_AACZ03155287_random     30241 601 -     33815 I

a score=1419.000000
s hg38.chr4_KI270925v1_alt            335343 5 +    555799 TCTGT
s panTro4.chr4_AACZ03155287_random     30842 5 -     33815 TCTGT
i panTro4.chr4_AACZ03155287_random I 601 C 0
s ponAbe2.chr4                     198129298 5 + 198332218 TCTGT
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=14174.000000
s hg38.chr4_KI270925v1_alt            335348 34 +    555799 TACTGAAGGGAGCTCACGCGGCATCAACAAGGAA
s panTro4.chr4_AACZ03155287_random     30847 34 -     33815 TGCTAAAGGGAGCTCATGCGAGATCAACAAGGAA
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129303 34 + 198332218 CACTAAAGCAAGCTCACGTGACATCAACAAGGAA
i ponAbe2.chr4                     C 0 T 108
s papAnu2.chr5                        269181 34 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAGGAA
i papAnu2.chr5                     T 50 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=1213.000000
s hg38.chr4_KI270925v1_alt            335382 6 +    555799 ACACAC
s panTro4.chr4_AACZ03155287_random     30881 6 -     33815 ACACAC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s papAnu2.chr5                        269215 6 - 178775436 ATGCAC
i papAnu2.chr5                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e ponAbe2.chr4                     198129337 108 + 198332218 T

a score=4191.000000
s hg38.chr4_KI270925v1_alt            335388 10 +    555799 TTAGTCCTTC
s panTro4.chr4_AACZ03155287_random     30887  8 -     33815 --AGTCCTTC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129229 10 + 198332218 TTAGTCCCTC
i ponAbe2.chr4                     T 108 C 0
s papAnu2.chr5                        269221 10 - 178775436 TTAGTCCTTT
i papAnu2.chr5                     C 0 T 50
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=546.000000
s hg38.chr4_KI270925v1_alt            335398 2 +    555799 TA
s panTro4.chr4_AACZ03155287_random     30895 2 -     33815 TA
i panTro4.chr4_AACZ03155287_random C 0 T 656
s ponAbe2.chr4                     198129239 2 + 198332218 TA
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=1419.000000
s hg38.chr4_KI270925v1_alt            335400 5 +    555799 TCTGT
s panTro4.chr4_AACZ03155287_random     30241 5 -     33815 TCTGT
i panTro4.chr4_AACZ03155287_random T 656 C 0
s ponAbe2.chr4                     198129241 5 + 198332218 TCTGT
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=18753.000000
s hg38.chr4_KI270925v1_alt            335405 40 +    555799 TACTAAAGGGAGCTCACGTGACATCAGCAAGGAAACACAC
s panTro4.chr4_AACZ03155287_random     30246 38 -     33815 TACTAAAGGGAGCTCACGTGACATCAGCAAGGAAACAC--
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129246 40 + 198332218 TACTAAAGGGAGCTCACGTGACATCAACAAGGAAACACAC
i ponAbe2.chr4                     C 0 C 0
s papAnu2.chr5                        269181 40 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAGGAAATGCAC
i papAnu2.chr5                     T 50 T 40
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=1208.000000
s hg38.chr4_KI270925v1_alt            335445 6 +    555799 TTAGTC
s panTro4.chr4_AACZ03155287_random     30284 4 -     33815 --AGTC
i panTro4.chr4_AACZ03155287_random C 0 T 49
s ponAbe2.chr4                     198129286 6 + 198332218 TTAGTC
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269221 40 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=10190.000000
s hg38.chr4_KI270925v1_alt            335451 53 +    555799 CTTCTATCTGTTACTAAAGCGAGCTCACGCGACATCAAAAAGGAAGCACAATC
s panTro4.chr4_AACZ03155287_random     30239 49 -     33815 CT----TCTGTTACTAAAGGGAGCTCACGTGACATCAGCAAGGAAACACAGTC
i panTro4.chr4_AACZ03155287_random T 49 T 173
s ponAbe2.chr4                     198129292 53 + 198332218 CTTCTATCTGTCACTAAAGCAAGCTCACGTGACATCAACAAGGAAACACACAC
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269221 40 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=60.000000
s hg38.chr4_KI270925v1_alt            335504 2 +    555799 CT
s ponAbe2.chr4                     198129345 2 + 198332218 TT
i ponAbe2.chr4                     C 0 T 110
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269221 40 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e panTro4.chr4_AACZ03155287_random     30288 173 -     33815 T

a score=4013.000000
s hg38.chr4_KI270925v1_alt            335506 45 +    555799 TCTATCTGTTACTAAAGGGAGCTCACGCAACATCAACAAGGAAAC
s ponAbe2.chr4                     198129237 45 + 198332218 TCTATCTGTTACTAAAGGGAGCTCACGTGACATCAACAAGGAAAC
i ponAbe2.chr4                     T 110 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269221 40 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I
e panTro4.chr4_AACZ03155287_random     30288 173 -     33815 T

a score=418.000000
s hg38.chr4_KI270925v1_alt            335551 3 +    555799 AAA
s panTro4.chr4_AACZ03155287_random     30115 3 -     33815 ACA
i panTro4.chr4_AACZ03155287_random T 173 C 0
s ponAbe2.chr4                     198129282 3 + 198332218 ACA
i ponAbe2.chr4                     C 0 T 57
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269221 40 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=12508.000000
s hg38.chr4_KI270925v1_alt            335554 52 +    555799 GTTAGTCCTTCTATCTGTTAATAAAGGGTGCTCACGTGACATCAAGAAGGAA
s panTro4.chr4_AACZ03155287_random     30118 52 -     33815 GTTAGTCCTTCTACCTGTTACTAAAGGGAGCTCACGCGACATCAGCAAGGAA
i panTro4.chr4_AACZ03155287_random C 0 I 384
s ponAbe2.chr4                     198129228 52 + 198332218 GTTAGTCCCTCTATCTGTTACTAAAGGGAGCTCACGTGACATCAACAAGGAA
i ponAbe2.chr4                     T 57 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269221 40 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=530.000000
s hg38.chr4_KI270925v1_alt            335606 8 +    555799 ACACAGTT
s ponAbe2.chr4                     198129280 8 + 198332218 ACACACTT
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269221 40 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e panTro4.chr4_AACZ03155287_random     30170 384 -     33815 I

a score=9493.000000
s hg38.chr4_KI270925v1_alt            335614 52 +    555799 AGTCCTTCTATCTGTTACTAAAGCGAGCTCACATGACATCAACAAGGAAACA
s panTro4.chr4_AACZ03155287_random     30554 37 -     33815 AGTCCTTCTATCTGTTACTAAAGCGAGCTCACATGAC---------------
i panTro4.chr4_AACZ03155287_random I 384 C 0
s ponAbe2.chr4                     198129288 52 + 198332218 AGTCCTTCTATCTGTCACTAAAGCAAGCTCACGTGACATCAACAAGGAAACA
i ponAbe2.chr4                     C 0 T 110
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269221 40 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=1266.000000
s hg38.chr4_KI270925v1_alt            335666 16 +    555799 CAGTCCTTCTATCTGT
s ponAbe2.chr4                     198129230 16 + 198332218 TAGTCCCTCTATCTGT
i ponAbe2.chr4                     T 110 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269221 40 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I
e panTro4.chr4_AACZ03155287_random     30591  0 -     33815 C

a score=10843.000000
s hg38.chr4_KI270925v1_alt            335682 40 +    555799 TACTAAAGGGGGCTCACGTGGCATCAACAAGGAAACACAG
s panTro4.chr4_AACZ03155287_random     30591 16 -     33815 ------------------------CAACAAGGAAACACAC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129246 40 + 198332218 TACTAAAGGGAGCTCACGTGACATCAACAAGGAAACACAC
i ponAbe2.chr4                     C 0 I 229
s papAnu2.chr5                        269181 40 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAGGAAATGCAC
i papAnu2.chr5                     T 40 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=4608.000000
s hg38.chr4_KI270925v1_alt            335722 10 +    555799 TTAGTCCTTC
s panTro4.chr4_AACZ03155287_random     30607 10 -     33815 TTAGTCCTTC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129515 10 + 198332218 TTACTCCTTC
i ponAbe2.chr4                     I 229 C 0
s papAnu2.chr5                        269221 10 - 178775436 TTAGTCCTTT
i papAnu2.chr5                     C 0 T 50
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=1965.000000
s hg38.chr4_KI270925v1_alt            335732 7 +    555799 TATCTGT
s panTro4.chr4_AACZ03155287_random     30617 7 -     33815 TATCTGT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129525 7 + 198332218 TATCTGT
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=19525.000000
s hg38.chr4_KI270925v1_alt            335739 40 +    555799 TACTAAAGCGAGCTCACGCGACATCAACAAGGAAACACAC
s panTro4.chr4_AACZ03155287_random     30624 40 -     33815 TACTAAAGGGAGCTCACGCGACATCAACAAGGAAACACAC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129532 40 + 198332218 TACTAAAGGGAGCTCACGTGACATCAACAAGGAAACACAC
i ponAbe2.chr4                     C 0 T 343
s papAnu2.chr5                        269181 40 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAGGAAATGCAC
i papAnu2.chr5                     T 50 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=4917.000000
s hg38.chr4_KI270925v1_alt            335779 10 +    555799 TTAGTCCTTC
s panTro4.chr4_AACZ03155287_random     30664 10 -     33815 TTAGTCCTTC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129229 10 + 198332218 TTAGTCCCTC
i ponAbe2.chr4                     T 343 C 0
s papAnu2.chr5                        269221 10 - 178775436 TTAGTCCTTT
i papAnu2.chr5                     C 0 T 50
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=1965.000000
s hg38.chr4_KI270925v1_alt            335789 7 +    555799 TATCTGT
s panTro4.chr4_AACZ03155287_random     30674 7 -     33815 TATCTGT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129239 7 + 198332218 TATCTGT
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=22467.000000
s hg38.chr4_KI270925v1_alt            335796 50 +    555799 TACTAAAGGGAGCTCACGTGGCATCAACAAGGAAACACAGTTAGTCCTTC
s panTro4.chr4_AACZ03155287_random     30681 46 -     33815 TACTAAAGGGAGCTCACGTGACATCAACAAGGAAACAC----AGTCCTTC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129246 50 + 198332218 TACTAAAGGGAGCTCACGTGACATCAACAAGGAAACACACTTAGTCCTTC
i ponAbe2.chr4                     C 0 C 0
s papAnu2.chr5                        269181 50 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAGGAAATGCACTTAGTCCTTT
i papAnu2.chr5                     T 50 T 50
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=1965.000000
s hg38.chr4_KI270925v1_alt            335846 7 +    555799 TATCTGT
s panTro4.chr4_AACZ03155287_random     30727 7 -     33815 TATCTGT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129296 7 + 198332218 TATCTGT
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=19547.000000
s hg38.chr4_KI270925v1_alt            335853 50 +    555799 TACTAAAGCGAGCTCACGTGACATCAGCAAGGAA--ACACACTTAGTCCTTC
s panTro4.chr4_AACZ03155287_random     30734 52 -     33815 TAATGAAGCAGGCTCACCTGACGTCAGCAAGAAAATATACACTTAGTCCTTT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129303 52 + 198332218 CACTAAAGCAAGCTCACGTGACATCAACAAGGAAACACACACTTAGTCCTTC
i ponAbe2.chr4                     C 0 C 0
s papAnu2.chr5                        269181 50 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAGGAA--ATGCACTTAGTCCTTT
i papAnu2.chr5                     T 50 T 50
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=3831.000000
s hg38.chr4_KI270925v1_alt            335903 21 +    555799 -TATCTGTTACTAAAACGAGCT
s panTro4.chr4_AACZ03155287_random     30786 22 -     33815 GTATCTGTTACTCAAGCGAGCT
i panTro4.chr4_AACZ03155287_random C 0 T 254
s ponAbe2.chr4                     198129355 17 + 198332218 -----TGTTACTAAAGCGAGCT
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=1370.000000
s hg38.chr4_KI270925v1_alt            335924 24 +    555799 CACCCGACATCAACAAGGAAACA----T
s ponAbe2.chr4                     198129372 28 + 198332218 CACCTGACATCAACAAGAAAATACACTT
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I
e panTro4.chr4_AACZ03155287_random     30808 254 -     33815 T

a score=6053.000000
s hg38.chr4_KI270925v1_alt            335948 30 +    555799 AGTCCTTC-TATCTGTTACTAAAGGGGGCTC
s panTro4.chr4_AACZ03155287_random     30554 30 -     33815 AGTCCTTC-TATCTGTTACTAAAGCGAGCTC
i panTro4.chr4_AACZ03155287_random T 254 C 0
s ponAbe2.chr4                     198129400 31 + 198332218 AGTCCTTTGTATCTGTTACTCAAGCGAGCTT
i ponAbe2.chr4                     C 0 T 203
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=91.000000
s hg38.chr4_KI270925v1_alt            335978 1 +    555799 A
s panTro4.chr4_AACZ03155287_random     30584 1 -     33815 A
i panTro4.chr4_AACZ03155287_random C 0 I 223
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e ponAbe2.chr4                     198129431 203 + 198332218 T

a score=0.000000
s hg38.chr4_KI270925v1_alt            335979 23 +    555799 GGCAACATCAACAAGGAAACACA
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I
e ponAbe2.chr4                     198129431 203 + 198332218 T
e panTro4.chr4_AACZ03155287_random     30585 223 -     33815 I

a score=1579.000000
s hg38.chr4_KI270925v1_alt            336002 18 +    555799 GTTAGTCCTTCTATCTGT
s ponAbe2.chr4                     198129228 18 + 198332218 GTTAGTCCCTCTATCTGT
i ponAbe2.chr4                     T 203 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I
e panTro4.chr4_AACZ03155287_random     30585 223 -     33815 I

a score=3903.000000
s hg38.chr4_KI270925v1_alt            336020 16 +    555799 TACTAAAGGGGGCTCA
s ponAbe2.chr4                     198129246 16 + 198332218 TACTAAAGGGAGCTCA
i ponAbe2.chr4                     C 0 C 0
s papAnu2.chr5                        269181 16 - 178775436 TACTAACGGGAGCTCA
i papAnu2.chr5                     T 50 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I
e panTro4.chr4_AACZ03155287_random     30585 223 -     33815 I

a score=13586.000000
s hg38.chr4_KI270925v1_alt            336036 34 +    555799 CGTGACATCAACAAGGAAAC--ACACTTAGTCCTTC
s panTro4.chr4_AACZ03155287_random     30808 34 -     33815 CGTGACATCAACAAGGAAACATACACTTACTCCT--
i panTro4.chr4_AACZ03155287_random I 223 C 0
s ponAbe2.chr4                     198129262 34 + 198332218 CGTGACATCAACAAGGAAAC--ACACTTAGTCCTTC
i ponAbe2.chr4                     C 0 C 0
s papAnu2.chr5                        269197 34 - 178775436 TGTGACATCAGCAAGGAAAT--GCACTTAGTCCTTT
i papAnu2.chr5                     C 0 T 50
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=1481.000000
s hg38.chr4_KI270925v1_alt            336070 7 +    555799 TATCTGT
s panTro4.chr4_AACZ03155287_random     30842 5 -     33815 --TCTGT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129296 7 + 198332218 TATCTGT
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=14174.000000
s hg38.chr4_KI270925v1_alt            336077 34 +    555799 TACTGAAGGGAGCTCACGCGGCATCAACAAGGAA
s panTro4.chr4_AACZ03155287_random     30847 34 -     33815 TGCTAAAGGGAGCTCATGCGAGATCAACAAGGAA
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129303 34 + 198332218 CACTAAAGCAAGCTCACGTGACATCAACAAGGAA
i ponAbe2.chr4                     C 0 I 231
s papAnu2.chr5                        269181 34 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAGGAA
i papAnu2.chr5                     T 50 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=6036.000000
s hg38.chr4_KI270925v1_alt            336111 16 +    555799 ACACACTTAGTCCTTC
s panTro4.chr4_AACZ03155287_random     30881 14 -     33815 ACACAC--AGTCCTTC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129568 16 + 198332218 ACACACTTAGTCCTTC
i ponAbe2.chr4                     I 231 C 0
s papAnu2.chr5                        269215 16 - 178775436 ATGCACTTAGTCCTTT
i papAnu2.chr5                     C 0 T 50
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=1965.000000
s hg38.chr4_KI270925v1_alt            336127 7 +    555799 TATCTGT
s panTro4.chr4_AACZ03155287_random     30895 7 -     33815 TATCTGT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129584 7 + 198332218 TATCTGT
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=18941.000000
s hg38.chr4_KI270925v1_alt            336134 38 +    555799 TACTAAAGGGAGCTCACGTGACATCAGCAAGGAAACAC
s panTro4.chr4_AACZ03155287_random     30902 38 -     33815 TGCTAAAGGGAGCTCACGTGACATCAGCAAGGAAACAC
i panTro4.chr4_AACZ03155287_random C 0 T 656
s ponAbe2.chr4                     198129591 38 + 198332218 TGCTAAAGGGAGCTCATGTGACATCAACAAGGAAACAC
i ponAbe2.chr4                     C 0 C 0
s papAnu2.chr5                        269181 38 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAGGAAATGC
i papAnu2.chr5                     T 50 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=846.000000
s hg38.chr4_KI270925v1_alt            336172 3 +    555799 ACT
s ponAbe2.chr4                     198129629 3 + 198332218 ACT
i ponAbe2.chr4                     C 0 T 345
s papAnu2.chr5                        269219 3 - 178775436 ACT
i papAnu2.chr5                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e panTro4.chr4_AACZ03155287_random     30940 656 -     33815 T

a score=273.000000
s hg38.chr4_KI270925v1_alt            336175 1 +    555799 T
s ponAbe2.chr4                     198129287 1 + 198332218 T
i ponAbe2.chr4                     T 345 C 0
s papAnu2.chr5                        269222 1 - 178775436 T
i papAnu2.chr5                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e panTro4.chr4_AACZ03155287_random     30940 656 -     33815 T

a score=2238.000000
s hg38.chr4_KI270925v1_alt            336176 8 +    555799 AGTCCTTC
s panTro4.chr4_AACZ03155287_random     30284 6 -     33815 AGTC--TC
i panTro4.chr4_AACZ03155287_random T 656 I 111
s ponAbe2.chr4                     198129288 8 + 198332218 AGTCCTTC
i ponAbe2.chr4                     C 0 C 0
s papAnu2.chr5                        269223 8 - 178775436 AGTCCTTT
i papAnu2.chr5                     C 0 T 50
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=3569.000000
s hg38.chr4_KI270925v1_alt            336184 51 +    555799 TATCTGTTACTAAAGCGAGCTCACGCGACATCAAAAAGGAAGCACAATCCT
s ponAbe2.chr4                     198129296 51 + 198332218 TATCTGTCACTAAAGCAAGCTCACGTGACATCAACAAGGAAACACACACTT
i ponAbe2.chr4                     C 0 T 119
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I
e panTro4.chr4_AACZ03155287_random     30290 111 -     33815 I

a score=0.000000
s hg38.chr4_KI270925v1_alt            336235 4 +    555799 TCTA
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e ponAbe2.chr4                     198129347 119 + 198332218 T
e panTro4.chr4_AACZ03155287_random     30290 111 -     33815 I

a score=3609.000000
s hg38.chr4_KI270925v1_alt            336239 42 +    555799 TCTGTTACTAAAGGGAGCTCACGCAACATCAACAAGGAAACA
s panTro4.chr4_AACZ03155287_random     30401 42 -     33815 TCTGTTACTAAAGGGAGCTCACGTGACATCAGCAAGGAAACA
i panTro4.chr4_AACZ03155287_random I 111 T 323
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I
e ponAbe2.chr4                     198129347 119 + 198332218 T

a score=0.000000
s hg38.chr4_KI270925v1_alt            336281 2 +    555799 AA
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e ponAbe2.chr4                     198129347 119 + 198332218 T
e panTro4.chr4_AACZ03155287_random     30443 323 -     33815 T

a score=191.000000
s hg38.chr4_KI270925v1_alt            336283 2 +    555799 GT
s ponAbe2.chr4                     198129228 2 + 198332218 GT
i ponAbe2.chr4                     T 119 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e panTro4.chr4_AACZ03155287_random     30443 323 -     33815 T

a score=13750.000000
s hg38.chr4_KI270925v1_alt            336285 58 +    555799 TAGTCCTTCTATCTGTTAATAAAGGGTGCTCACGTGACATCAAGAAGGAAACACAGTT
s panTro4.chr4_AACZ03155287_random     30120 58 -     33815 TAGTCCTTCTACCTGTTACTAAAGGGAGCTCACGCGACATCAGCAAGGAAACACAGTT
i panTro4.chr4_AACZ03155287_random T 323 I 376
s ponAbe2.chr4                     198129230 58 + 198332218 TAGTCCCTCTATCTGTTACTAAAGGGAGCTCACGTGACATCAACAAGGAAACACACTT
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=9783.000000
s hg38.chr4_KI270925v1_alt            336343 37 +    555799 AGTCCTTCTATCTGTTACTAAAGCGAGCTCACATGAC
s panTro4.chr4_AACZ03155287_random     30554 37 -     33815 AGTCCTTCTATCTGTTACTAAAGCGAGCTCACATGAC
i panTro4.chr4_AACZ03155287_random I 376 T 163
s ponAbe2.chr4                     198129288 37 + 198332218 AGTCCTTCTATCTGTCACTAAAGCAAGCTCACGTGAC
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=3986.000000
s hg38.chr4_KI270925v1_alt            336380 15 +    555799 ATCAACAAGGAAACA
s panTro4.chr4_AACZ03155287_random     30428 15 -     33815 ATCAGCAAGGAAACA
i panTro4.chr4_AACZ03155287_random T 163 C 0
s ponAbe2.chr4                     198129325 15 + 198332218 ATCAACAAGGAAACA
i ponAbe2.chr4                     C 0 T 110
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=4051.000000
s hg38.chr4_KI270925v1_alt            336395 16 +    555799 CAGTCCTTCTATCTGT
s panTro4.chr4_AACZ03155287_random     30443 16 -     33815 CAGTCCTTCTATCTGT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129230 16 + 198332218 TAGTCCCTCTATCTGT
i ponAbe2.chr4                     T 110 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=10890.000000
s hg38.chr4_KI270925v1_alt            336411 24 +    555799 TACTAAAGGGGGCTCACGTGGCAT
s panTro4.chr4_AACZ03155287_random     30459 24 -     33815 TACTAAAGCGAGCTCACATGACAT
i panTro4.chr4_AACZ03155287_random C 0 I 108
s ponAbe2.chr4                     198129246 24 + 198332218 TACTAAAGGGAGCTCACGTGACAT
i ponAbe2.chr4                     C 0 C 0
s papAnu2.chr5                        269181 24 - 178775436 TACTAACGGGAGCTCATGTGACAT
i papAnu2.chr5                     T 50 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=7389.000000
s hg38.chr4_KI270925v1_alt            336435 15 +    555799 CAACAAGGAAACACA
s panTro4.chr4_AACZ03155287_random     30591 15 -     33815 CAACAAGGAAACACA
i panTro4.chr4_AACZ03155287_random I 108 C 0
s ponAbe2.chr4                     198129270 15 + 198332218 CAACAAGGAAACACA
i ponAbe2.chr4                     C 0 T 57
s papAnu2.chr5                        269205 15 - 178775436 CAGCAAGGAAATGCA
i papAnu2.chr5                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=4617.000000
s hg38.chr4_KI270925v1_alt            336450 11 +    555799 GTTAGTCCTTC
s panTro4.chr4_AACZ03155287_random     30606 11 -     33815 CTTAGTCCTTC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129228 11 + 198332218 GTTAGTCCCTC
i ponAbe2.chr4                     T 57 C 0
s papAnu2.chr5                        269220 11 - 178775436 CTTAGTCCTTT
i papAnu2.chr5                     C 0 T 50
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=273.000000
s hg38.chr4_KI270925v1_alt            336461 1 +    555799 T
s panTro4.chr4_AACZ03155287_random     30617 1 -     33815 T
i panTro4.chr4_AACZ03155287_random C 0 T 328
s ponAbe2.chr4                     198129239 1 + 198332218 T
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=1692.000000
s hg38.chr4_KI270925v1_alt            336462 6 +    555799 ATCTGT
s panTro4.chr4_AACZ03155287_random     30290 6 -     33815 ATCTGT
i panTro4.chr4_AACZ03155287_random T 328 C 0
s ponAbe2.chr4                     198129240 6 + 198332218 ATCTGT
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=18625.000000
s hg38.chr4_KI270925v1_alt            336468 40 +    555799 TACTAAAGCGAGCTCACGCGACATCAACAAGGAAACACAC
s panTro4.chr4_AACZ03155287_random     30296 40 -     33815 TACTAAAGCGAGCTCACGCGACATCAACAAGGAAACACAG
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129246 40 + 198332218 TACTAAAGGGAGCTCACGTGACATCAACAAGGAAACACAC
i ponAbe2.chr4                     C 0 T 57
s papAnu2.chr5                        269181 40 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAGGAAATGCAC
i papAnu2.chr5                     T 50 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=4917.000000
s hg38.chr4_KI270925v1_alt            336508 10 +    555799 TTAGTCCTTC
s panTro4.chr4_AACZ03155287_random     30336 10 -     33815 TTAGTCCTTC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129229 10 + 198332218 TTAGTCCCTC
i ponAbe2.chr4                     T 57 C 0
s papAnu2.chr5                        269221 10 - 178775436 TTAGTCCTTT
i papAnu2.chr5                     C 0 T 50
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=1721.000000
s hg38.chr4_KI270925v1_alt            336518 7 +    555799 TATCTGT
s panTro4.chr4_AACZ03155287_random     30346 7 -     33815 TACCTGT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129239 7 + 198332218 TATCTGT
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=17155.000000
s hg38.chr4_KI270925v1_alt            336525 34 +    555799 TACTAAAGGGAGCTCACGTGGCATCAACAAGGAA
s panTro4.chr4_AACZ03155287_random     30353 34 -     33815 TACTAAAGGGAGCTCACGCGACATCAGCAAGGAA
i panTro4.chr4_AACZ03155287_random C 0 I 328
s ponAbe2.chr4                     198129246 34 + 198332218 TACTAAAGGGAGCTCACGTGACATCAACAAGGAA
i ponAbe2.chr4                     C 0 C 0
s papAnu2.chr5                        269181 34 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAGGAA
i papAnu2.chr5                     T 50 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=4833.000000
s hg38.chr4_KI270925v1_alt            336559 16 +    555799 ACACAGTTAGTCCTTC
s panTro4.chr4_AACZ03155287_random     30715 12 -     33815 ACAC----AGTCCTTC
i panTro4.chr4_AACZ03155287_random I 328 C 0
s ponAbe2.chr4                     198129280 16 + 198332218 ACACACTTAGTCCTTC
i ponAbe2.chr4                     C 0 C 0
s papAnu2.chr5                        269215 16 - 178775436 ATGCACTTAGTCCTTT
i papAnu2.chr5                     C 0 T 50
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=1965.000000
s hg38.chr4_KI270925v1_alt            336575 7 +    555799 TATCTGT
s panTro4.chr4_AACZ03155287_random     30727 7 -     33815 TATCTGT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129296 7 + 198332218 TATCTGT
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=13645.000000
s hg38.chr4_KI270925v1_alt            336582 34 +    555799 TACTAAAGCGAGCTCACGTGACATCAGCAAGGAA
s panTro4.chr4_AACZ03155287_random     30734 34 -     33815 TAATGAAGCAGGCTCACCTGACGTCAGCAAGAAA
i panTro4.chr4_AACZ03155287_random C 0 T 275
s ponAbe2.chr4                     198129303 34 + 198332218 CACTAAAGCAAGCTCACGTGACATCAACAAGGAA
i ponAbe2.chr4                     C 0 I 2
s papAnu2.chr5                        269181 34 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAGGAA
i papAnu2.chr5                     T 50 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=6534.000000
s hg38.chr4_KI270925v1_alt            336616 14 +    555799 ACACACTTAGTCCT
s panTro4.chr4_AACZ03155287_random     30493 14 -     33815 ACACAGTTAGTCCT
i panTro4.chr4_AACZ03155287_random T 275 C 0
s ponAbe2.chr4                     198129339 14 + 198332218 ACACACTTAGTCCT
i ponAbe2.chr4                     I 2 T 55
s papAnu2.chr5                        269215 14 - 178775436 ATGCACTTAGTCCT
i papAnu2.chr5                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=311.000000
s hg38.chr4_KI270925v1_alt            336630 2 +    555799 TC
s panTro4.chr4_AACZ03155287_random     30507 2 -     33815 TC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s papAnu2.chr5                        269229 2 - 178775436 TT
i papAnu2.chr5                     C 0 T 50
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e ponAbe2.chr4                     198129353 55 + 198332218 T

a score=182.000000
s hg38.chr4_KI270925v1_alt            336632 2 +    555799 TA
s panTro4.chr4_AACZ03155287_random     30509 2 -     33815 TA
i panTro4.chr4_AACZ03155287_random C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e ponAbe2.chr4                     198129353 55 + 198332218 T

a score=10402.000000
s hg38.chr4_KI270925v1_alt            336634 49 +    555799 TCTGTTACTAAAACGAGCTCACCCGACATCAACAAGGAAACAT------AGTCCT
s panTro4.chr4_AACZ03155287_random     30511 49 -     33815 TCTGTTACTAAAGGGAGCTCACGCGACATCAGCAAGGAAACAC------AGTCCT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129298 55 + 198332218 TCTGTCACTAAAGCAAGCTCACGTGACATCAACAAGGAAACACACACTTAGTCCT
i ponAbe2.chr4                     T 55 T 116
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=6401.000000
s hg38.chr4_KI270925v1_alt            336683 25 +    555799 TCTATCTGTTACTAAAGGGGGCTCA
s panTro4.chr4_AACZ03155287_random     30560 25 -     33815 TCTATCTGTTACTAAAGCGAGCTCA
i panTro4.chr4_AACZ03155287_random C 0 T 295
s ponAbe2.chr4                     198129237 25 + 198332218 TCTATCTGTTACTAAAGGGAGCTCA
i ponAbe2.chr4                     T 116 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=1805.000000
s hg38.chr4_KI270925v1_alt            336708 24 +    555799 GGCAACATCAACAAGGAAACACAC
s ponAbe2.chr4                     198129262 24 + 198332218 CGTGACATCAACAAGGAAACACAC
i ponAbe2.chr4                     C 0 T 57
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I
e panTro4.chr4_AACZ03155287_random     30585 295 -     33815 T

a score=701.000000
s hg38.chr4_KI270925v1_alt            336732 11 +    555799 TTAGACCTTCT
s ponAbe2.chr4                     198129229 11 + 198332218 TTAGTCCCTCT
i ponAbe2.chr4                     T 57 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I
e panTro4.chr4_AACZ03155287_random     30585 295 -     33815 T

a score=1692.000000
s hg38.chr4_KI270925v1_alt            336743 6 +    555799 ATCTGT
s panTro4.chr4_AACZ03155287_random     30290 6 -     33815 ATCTGT
i panTro4.chr4_AACZ03155287_random T 295 C 0
s ponAbe2.chr4                     198129240 6 + 198332218 ATCTGT
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=24021.000000
s hg38.chr4_KI270925v1_alt            336749 50 +    555799 TACTAAAGCGAGCTCACGTGACATCAACAAGGAAACACACTTAGTCCTTC
s panTro4.chr4_AACZ03155287_random     30296 50 -     33815 TACTAAAGCGAGCTCACGCGACATCAACAAGGAAACACAGTTAGTCCTTC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129246 50 + 198332218 TACTAAAGGGAGCTCACGTGACATCAACAAGGAAACACACTTAGTCCTTC
i ponAbe2.chr4                     C 0 C 0
s papAnu2.chr5                        269181 50 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAGGAAATGCACTTAGTCCTTT
i papAnu2.chr5                     T 50 T 50
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=10292.000000
s hg38.chr4_KI270925v1_alt            336799 51 +    555799 TATCTGTTACTAAATCGAGCTCACGCGACATCAACAAGGAAACACAGTCCT
s panTro4.chr4_AACZ03155287_random     30346 51 -     33815 TACCTGTTACTAAAGGGAGCTCACGCGACATCAGCAAGGAAACACACTTAG
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129296 51 + 198332218 TATCTGTCACTAAAGCAAGCTCACGTGACATCAACAAGGAAACACACACTT
i ponAbe2.chr4                     C 0 I 5
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=160.000000
s hg38.chr4_KI270925v1_alt            336850 3 +    555799 TCT
s panTro4.chr4_AACZ03155287_random     30397 3 -     33815 TCC
i panTro4.chr4_AACZ03155287_random C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e ponAbe2.chr4                     198129347 5 + 198332218 I

a score=1692.000000
s hg38.chr4_KI270925v1_alt            336853 6 +    555799 TTCTGT
s panTro4.chr4_AACZ03155287_random     30400 6 -     33815 TTCTGT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129352 6 + 198332218 TTCTGT
i ponAbe2.chr4                     I 5 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=16727.000000
s hg38.chr4_KI270925v1_alt            336859 40 +    555799 TACTAAAGGGGGCTCACGTGACATCAACAAGGAAACACAC
s panTro4.chr4_AACZ03155287_random     30406 39 -     33815 TACTAAAGGGAGCTCACGTGACATCAGCAAGGAAACACA-
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129358 40 + 198332218 TACTAAAGCGAGCTCACCTGACATCAACAAGAAAATACAC
i ponAbe2.chr4                     C 0 C 0
s papAnu2.chr5                        269181 40 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAGGAAATGCAC
i papAnu2.chr5                     T 50 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327298 56 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=7213.000000
s hg38.chr4_KI270925v1_alt            336899 10 +    555799 TTAGTCCTTC
s panTro4.chr4_AACZ03155287_random     30445  7 -     33815 ---GTCCTTC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129398 10 + 198332218 TTAGTCCTTT
i ponAbe2.chr4                     C 0 I 1
s papAnu2.chr5                        269221 10 - 178775436 TTAGTCCTTT
i papAnu2.chr5                     C 0 T 50
s chlSab2.chr7                        327242 10 - 135778131 TTAGTCCTTC
i chlSab2.chr7                     T 56 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=3930.000000
s hg38.chr4_KI270925v1_alt            336909 7 +    555799 TATCTGT
s panTro4.chr4_AACZ03155287_random     30452 7 -     33815 TATCTGT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129409 7 + 198332218 TATCTGT
i ponAbe2.chr4                     I 1 C 0
s chlSab2.chr7                        327252 7 - 135778131 TATCTGT
i chlSab2.chr7                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=33812.000000
s hg38.chr4_KI270925v1_alt            336916 50 +    555799 TACTAAAGCGAGCTCATGTGACATCAACAAGGAA--ACACACTTAGTCCTTC
s panTro4.chr4_AACZ03155287_random     30459 50 -     33815 TACTAAAGCGAGCTCACATGACATCAACAAGGAA--ACACAGTTAGTCCTTC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129416 50 + 198332218 TACTCAAGCGAGCT--TGTGACATCAACAAGGAAACACACACTTACTCCCTC
i ponAbe2.chr4                     C 0 C 0
s papAnu2.chr5                        269181 50 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAGGAA--ATGCACTTAGTCCTTT
i papAnu2.chr5                     T 50 T 50
s chlSab2.chr7                        327259 50 - 135778131 TACTAAAGGGAGCTCATGTGACATCCACAAGGAA--ACAcacttagtccttc
i chlSab2.chr7                     C 0 T 10
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=11629.000000
s hg38.chr4_KI270925v1_alt            336966 45 +    555799 TATCTGTTACTAAAGTGAGCTCACGCGACATCAACAAGGAAACAC
s panTro4.chr4_AACZ03155287_random     30509 45 -     33815 TATCTGTTACTAAAGGGAGCTCACGCGACATCAGCAAGGAAACAC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129466 45 + 198332218 TATCTGTTACTAAAGGGAGCTCATGTGACATCAACAAGGAAACAC
i ponAbe2.chr4                     C 0 T 158
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 10 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=946.000000
s hg38.chr4_KI270925v1_alt            337011 10 +    555799 AGTCCTTCTA
s panTro4.chr4_AACZ03155287_random     30554 10 -     33815 AGTCCTTCTA
i panTro4.chr4_AACZ03155287_random C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 10 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I
e ponAbe2.chr4                     198129511 158 + 198332218 T

a score=1419.000000
s hg38.chr4_KI270925v1_alt            337021 5 +    555799 TCTGT
s panTro4.chr4_AACZ03155287_random     30564 5 -     33815 TCTGT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129353 5 + 198332218 TCTGT
i ponAbe2.chr4                     T 158 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 10 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=9406.000000
s hg38.chr4_KI270925v1_alt            337026 22 +    555799 TACTAAAGGGGGCTCACGTGAC
s panTro4.chr4_AACZ03155287_random     30569 22 -     33815 TACTAAAGCGAGCTCACATGAC
i panTro4.chr4_AACZ03155287_random C 0 I 177
s ponAbe2.chr4                     198129358 22 + 198332218 TACTAAAGCGAGCTCACCTGAC
i ponAbe2.chr4                     C 0 C 0
s papAnu2.chr5                        269181 22 - 178775436 TACTAACGGGAGCTCATGTGAC
i papAnu2.chr5                     T 50 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 10 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=2332.000000
s hg38.chr4_KI270925v1_alt            337048 10 +    555799 ATCAACAAGG
s ponAbe2.chr4                     198129380 10 + 198332218 ATCAACAAGA
i ponAbe2.chr4                     C 0 I 1
s papAnu2.chr5                        269203 10 - 178775436 ATCAGCAAGG
i papAnu2.chr5                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 10 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I
e panTro4.chr4_AACZ03155287_random     30591 177 -     33815 I

a score=-1173.000000
s hg38.chr4_KI270925v1_alt            337058 2 +    555799 -AT
s panTro4.chr4_AACZ03155287_random     30768 2 -     33815 -AT
i panTro4.chr4_AACZ03155287_random I 177 T 383
s ponAbe2.chr4                     198129391 1 + 198332218 -A-
i ponAbe2.chr4                     I 1 C 0
s papAnu2.chr5                        269213 2 - 178775436 AA-
i papAnu2.chr5                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 10 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=7069.000000
s hg38.chr4_KI270925v1_alt            337060 14 +    555799 ACACACTTAGTCCT
s panTro4.chr4_AACZ03155287_random     30387 14 -     33815 ACACACTTAGTCCT
i panTro4.chr4_AACZ03155287_random T 383 C 0
s ponAbe2.chr4                     198129392 14 + 198332218 ATACACTTAGTCCT
i ponAbe2.chr4                     C 0 I 62
s papAnu2.chr5                        269215 14 - 178775436 ATGCACTTAGTCCT
i papAnu2.chr5                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 10 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=546.000000
s hg38.chr4_KI270925v1_alt            337074 1 +    555799 T
s panTro4.chr4_AACZ03155287_random     30401 1 -     33815 T
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129468 1 + 198332218 T
i ponAbe2.chr4                     I 62 C 0
s papAnu2.chr5                        269229 1 - 178775436 T
i papAnu2.chr5                     C 0 T 49
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 10 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=10197.000000
s hg38.chr4_KI270925v1_alt            337075 40 +    555799 CTGTTACTAAAGCGAGCTCATGCGACATCAACAAGGAAAC
s panTro4.chr4_AACZ03155287_random     30402 40 -     33815 CTGTTACTAAAGGGAGCTCACGTGACATCAGCAAGGAAAC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129469 40 + 198332218 CTGTTACTAAAGGGAGCTCATGTGACATCAACAAGGAAAC
i ponAbe2.chr4                     C 0 T 279
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 10 - 135778131 T
e papAnu2.chr5                        269230 49 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=91.000000
s hg38.chr4_KI270925v1_alt            337115 1 +    555799 A
s panTro4.chr4_AACZ03155287_random     30442 1 -     33815 A
i panTro4.chr4_AACZ03155287_random C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 10 - 135778131 T
e papAnu2.chr5                        269230 49 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e ponAbe2.chr4                     198129509 279 + 198332218 T

a score=4051.000000
s hg38.chr4_KI270925v1_alt            337116 16 +    555799 CAGTCCTTCTATCTGT
s panTro4.chr4_AACZ03155287_random     30443 16 -     33815 CAGTCCTTCTATCTGT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129230 16 + 198332218 TAGTCCCTCTATCTGT
i ponAbe2.chr4                     T 279 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 10 - 135778131 T
e papAnu2.chr5                        269230 49 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=15725.000000
s hg38.chr4_KI270925v1_alt            337132 34 +    555799 TACTAACGCGAACTCACGTGATATCAACAAGGAA
s panTro4.chr4_AACZ03155287_random     30459 34 -     33815 TACTAAAGCGAGCTCACATGACATCAACAAGGAA
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129246 34 + 198332218 TACTAAAGGGAGCTCACGTGACATCAACAAGGAA
i ponAbe2.chr4                     C 0 I 229
s papAnu2.chr5                        269181 34 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAGGAA
i papAnu2.chr5                     T 49 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 10 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=6612.000000
s hg38.chr4_KI270925v1_alt            337166 16 +    555799 ACACACTTAGTCCTTC
s panTro4.chr4_AACZ03155287_random     30493 16 -     33815 ACACAGTTAGTCCTTC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129509 16 + 198332218 ACACACTTACTCCTTC
i ponAbe2.chr4                     I 229 C 0
s papAnu2.chr5                        269215 16 - 178775436 ATGCACTTAGTCCTTT
i papAnu2.chr5                     C 0 T 50
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 10 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=10732.000000
s hg38.chr4_KI270925v1_alt            337182 41 +    555799 TATCTGTTACTAAAGCGAGCTCACGCGACATCAGCAAGGAA
s panTro4.chr4_AACZ03155287_random     30509 41 -     33815 TATCTGTTACTAAAGGGAGCTCACGCGACATCAGCAAGGAA
i panTro4.chr4_AACZ03155287_random C 0 I 285
s ponAbe2.chr4                     198129525 41 + 198332218 TATCTGTTACTAAAGGGAGCTCACGTGACATCAACAAGGAA
i ponAbe2.chr4                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 10 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=382.000000
s hg38.chr4_KI270925v1_alt            337223 4 +    555799 ACAC
s ponAbe2.chr4                     198129566 4 + 198332218 ACAC
i ponAbe2.chr4                     C 0 T 217
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 10 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e panTro4.chr4_AACZ03155287_random     30550 285 -     33815 I

a score=0.000000
s hg38.chr4_KI270925v1_alt            337227 15 +    555799 AGTCCTTCTATCTGT
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 10 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I
e ponAbe2.chr4                     198129570 217 + 198332218 T
e panTro4.chr4_AACZ03155287_random     30550 285 -     33815 I

a score=3182.000000
s hg38.chr4_KI270925v1_alt            337242 41 +    555799 TACTAAAGGGGGCTCATGTGACATCAACAAGGAAACACACT
s papAnu2.chr5                        269181 41 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAGGAAATGCACT
i papAnu2.chr5                     T 50 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 10 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I
e ponAbe2.chr4                     198129570 217 + 198332218 T
e panTro4.chr4_AACZ03155287_random     30550 285 -     33815 I

a score=1269.000000
s hg38.chr4_KI270925v1_alt            337283 6 +    555799 TAGTCC
s panTro4.chr4_AACZ03155287_random     30835 6 -     33815 TACTCC
i panTro4.chr4_AACZ03155287_random I 285 C 0
s papAnu2.chr5                        269222 6 - 178775436 TAGTCC
i papAnu2.chr5                     C 0 T 47
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 10 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e ponAbe2.chr4                     198129570 217 + 198332218 T

a score=-339.000000
s hg38.chr4_KI270925v1_alt            337289 2 +    555799 TA
s panTro4.chr4_AACZ03155287_random     30841 1 -     33815 T-
i panTro4.chr4_AACZ03155287_random C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 10 - 135778131 T
e papAnu2.chr5                        269228 47 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e ponAbe2.chr4                     198129570 217 + 198332218 T

a score=1419.000000
s hg38.chr4_KI270925v1_alt            337291 5 +    555799 TCTGT
s panTro4.chr4_AACZ03155287_random     30842 5 -     33815 TCTGT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129353 5 + 198332218 TCTGT
i ponAbe2.chr4                     T 217 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 10 - 135778131 T
e papAnu2.chr5                        269228 47 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=9681.000000
s hg38.chr4_KI270925v1_alt            337296 24 +    555799 TACTAAAGCGAGCTCATGTGACAT
s panTro4.chr4_AACZ03155287_random     30847 24 -     33815 TGCTAAAGGGAGCTCATGCGAGAT
i panTro4.chr4_AACZ03155287_random C 0 T 280
s ponAbe2.chr4                     198129358 24 + 198332218 TACTAAAGCGAGCTCACCTGACAT
i ponAbe2.chr4                     C 0 C 0
s papAnu2.chr5                        269181 24 - 178775436 TACTAACGGGAGCTCATGTGACAT
i papAnu2.chr5                     T 47 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 10 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=12599.000000
s hg38.chr4_KI270925v1_alt            337320 26 +    555799 CAACAAGGAAACACACTTAGTCCTTC
s panTro4.chr4_AACZ03155287_random     30591 26 -     33815 CAACAAGGAAACACACTTAGTCCTTC
i panTro4.chr4_AACZ03155287_random T 280 C 0
s ponAbe2.chr4                     198129382 26 + 198332218 CAACAAGAAAATACACTTAGTCCTTT
i ponAbe2.chr4                     C 0 C 0
s papAnu2.chr5                        269205 26 - 178775436 CAGCAAGGAAATGCACTTAGTCCTTT
i papAnu2.chr5                     C 0 T 50
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 10 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=5029.000000
s hg38.chr4_KI270925v1_alt            337346 21 +    555799 -TATCTGTTACTAAAGCGAGCT
s panTro4.chr4_AACZ03155287_random     30617 21 -     33815 -TATCTGTTACTAAAGGGAGCT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129408 22 + 198332218 GTATCTGTTACTCAAGCGAGCT
i ponAbe2.chr4                     C 0 T 113
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 10 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=1009.000000
s hg38.chr4_KI270925v1_alt            337367 39 +    555799 CACGCGATATCAACAAGGAAACACAGTCCT--TCTATCTGT
s panTro4.chr4_AACZ03155287_random     30638 11 -     33815 CACGCGACATC------------------------------
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129317 41 + 198332218 CACGTGACATCAACAAGGAAACACACACTTAGTCCTTCTGT
i ponAbe2.chr4                     T 113 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 10 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=3453.000000
s hg38.chr4_KI270925v1_alt            337406 16 +    555799 TACTAAAGGGGGCTCA
s ponAbe2.chr4                     198129358 16 + 198332218 TACTAAAGCGAGCTCA
i ponAbe2.chr4                     C 0 I 56
s papAnu2.chr5                        269181 16 - 178775436 TACTAACGGGAGCTCA
i papAnu2.chr5                     T 50 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 10 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I
e panTro4.chr4_AACZ03155287_random     30649  0 -     33815 C

a score=11312.000000
s hg38.chr4_KI270925v1_alt            337422 34 +    555799 CGTGACATGAACAAGGAA--ACACACTTAGTCCTTC
s panTro4.chr4_AACZ03155287_random     30649 25 -     33815 ---------AACAAGGAA--ACACACTTAGTCCTTC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129430 36 + 198332218 TGTGACATCAACAAGGAAACACACACTTACTCCCTC
i ponAbe2.chr4                     I 56 C 0
s papAnu2.chr5                        269197 34 - 178775436 TGTGACATCAGCAAGGAA--ATGCACTTAGTCCTTT
i papAnu2.chr5                     C 0 T 50
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 10 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=12030.000000
s hg38.chr4_KI270925v1_alt            337456 45 +    555799 TATCTGTTACTAAAGGGAGCTCACGTGACATCAGCAAGAAAACAC
s panTro4.chr4_AACZ03155287_random     30674 45 -     33815 TATCTGTTACTAAAGGGAGCTCACGTGACATCAACAAGGAAACAC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129466 45 + 198332218 TATCTGTTACTAAAGGGAGCTCATGTGACATCAACAAGGAAACAC
i ponAbe2.chr4                     C 0 T 281
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 10 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=3273.000000
s hg38.chr4_KI270925v1_alt            337501 49 +    555799 AGTCCTTCTATCTGTTACTAAAGGTAGCTCACGTGACATCAGCAAGGAA
s panTro4.chr4_AACZ03155287_random     30719 49 -     33815 AGTCCTTCTATCTGTTAATGAAGCAGGCTCACCTGACGTCAGCAAGAAA
i panTro4.chr4_AACZ03155287_random C 0 T 541
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 10 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I
e ponAbe2.chr4                     198129511 281 + 198332218 T

a score=7730.000000
s hg38.chr4_KI270925v1_alt            337550 109 +    555799 ACACAGTCCTTCTATCTGTTACTAAAGGGAGCTCACGTGACATCAGCAAGGAAACACAGTCCTTCTGTCTGTTACTAAAGGGAGCTCACGCGACATCAACAAGGAAACA
s panTro4.chr4_AACZ03155287_random     30227 106 -     33815 ACACACTTAGTCCTTCTGTTACTAAAGGGAGCTCACGTGACATCAGCAAGGAAACACAGTC--TC-ATCTGTTACTAAAGCGAGCTCACGCGACATCAACAAGGAAACA
i panTro4.chr4_AACZ03155287_random T 541 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309  10 - 135778131 T
e papAnu2.chr5                        269231  50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862   0 - 115148730 I
e ponAbe2.chr4                     198129511 281 + 198332218 T

a score=2398.000000
s hg38.chr4_KI270925v1_alt            337659 16 +    555799 CAGT----CCTTCTATCTGT
s panTro4.chr4_AACZ03155287_random     30333 20 -     33815 CAGTTAGTCCTTCTACCTGT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129230 16 + 198332218 ----TAGTCCCTCTATCTGT
i ponAbe2.chr4                     T 281 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 10 - 135778131 T
e papAnu2.chr5                        269231 50 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=24841.000000
s hg38.chr4_KI270925v1_alt            337675 50 +    555799 TACTAAAGGGAGCTCATGTGACATCAGCAAGTAAACACACTTAGTCCTTC
s panTro4.chr4_AACZ03155287_random     30353 50 -     33815 TACTAAAGGGAGCTCACGCGACATCAGCAAGGAAACACACTTAGTCCTTC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129246 50 + 198332218 TACTAAAGGGAGCTCACGTGACATCAACAAGGAAACACACTTAGTCCTTC
i ponAbe2.chr4                     C 0 C 0
s papAnu2.chr5                        269181 50 - 178775436 TACTAACGGGAGCTCATGTGACATCAGCAAGGAAATGCACTTAGTCCTTT
i papAnu2.chr5                     T 50 T 10
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 10 - 135778131 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=10147.000000
s hg38.chr4_KI270925v1_alt            337725 51 +    555799 TGTCTGTTACTAAAGGGAGCTCACGTGACATCAGCAAGGAAACACAGTCCT
s panTro4.chr4_AACZ03155287_random     30403 47 -     33815 TGT----TACTAAAGGGAGCTCACGTGACATCAGCAAGGAAACACAGTCCT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129296 51 + 198332218 TATCTGTCACTAAAGCAAGCTCACGTGACATCAACAAGGAAACACACACTT
i ponAbe2.chr4                     C 0 I 285
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 10 - 135778131 T
e papAnu2.chr5                        269231 10 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I

a score=3550.000000
s hg38.chr4_KI270925v1_alt            337776 48 +    555799 TCTATCTGTTACTAAAGGGAGCTCACGCGACATCAACAAGGAAACAC----A
s panTro4.chr4_AACZ03155287_random     30450 52 -     33815 TCTATCTGTTACTAAAGCGAGCTCACATGACATCAACAAGGAAACACAGTTA
i panTro4.chr4_AACZ03155287_random C 0 I 438
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 10 - 135778131 T
e papAnu2.chr5                        269231 10 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I
e ponAbe2.chr4                     198129347 285 + 198332218 I

a score=0.000000
s hg38.chr4_KI270925v1_alt            337824 14 +    555799 GTCCTTCTATCCGT
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 10 - 135778131 T
e papAnu2.chr5                        269231 10 - 178775436 T
e macFas5.chr5                        369811 1587 - 189454096 I
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I
e ponAbe2.chr4                     198129347 285 + 198332218 I
e panTro4.chr4_AACZ03155287_random     30502 438 -     33815 I

a score=582.000000
s hg38.chr4_KI270925v1_alt            337838 13 +    555799 TACTAAAGCGAGG
s macFas5.chr5                        371398 13 - 189454096 tactaaagggcgc
i macFas5.chr5                     I 1587 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 10 - 135778131 T
e papAnu2.chr5                        269231 10 - 178775436 T
e rheMac3.chr5                        374340 1609 - 184069350 I
e nomLeu3.chr7b                      1339862  0 - 115148730 I
e ponAbe2.chr4                     198129347 285 + 198332218 I
e panTro4.chr4_AACZ03155287_random     30502 438 -     33815 I

a score=1748.000000
s hg38.chr4_KI270925v1_alt            337851 7 +    555799 TCACGTG
s rheMac3.chr5                        375949 7 - 184069350 tcatgtg
i rheMac3.chr5                     I 1609 C 0
s macFas5.chr5                        371411 7 - 189454096 tcatgtg
i macFas5.chr5                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        300458 1660 + 190850796 I
e chlSab2.chr7                        327309 10 - 135778131 T
e papAnu2.chr5                        269231 10 - 178775436 T
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e ponAbe2.chr4                     198129347 285 + 198332218 I
e panTro4.chr4_AACZ03155287_random     30502 438 -     33815 I

a score=9054.000000
s hg38.chr4_KI270925v1_alt            337858 18 +    555799 ACATCAACAAGGAAACAT
s rheMac3.chr5                        375956 18 - 184069350 acatcaacaaggaaacac
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                        371418 18 - 189454096 acatcaacaaggaaacac
i macFas5.chr5                     C 0 C 0
s calJac3.chr3                        302118 18 + 190850796 ACATCAACAGGGAAATAC
i calJac3.chr3                     I 1660 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e chlSab2.chr7                        327309 10 - 135778131 T
e papAnu2.chr5                        269231 10 - 178775436 T
e nomLeu3.chr7b                      1339862  0 - 115148730 I
e ponAbe2.chr4                     198129347 285 + 198332218 I
e panTro4.chr4_AACZ03155287_random     30502 438 -     33815 I

a score=2820.000000
s hg38.chr4_KI270925v1_alt            337876 3 +    555799 Aca
s panTro4.chr4_AACZ03155287_random     30940 3 -     33815 Aca
i panTro4.chr4_AACZ03155287_random I 438 C 0
s rheMac3.chr5                        375974 3 - 184069350 aca
i rheMac3.chr5                     C 0 I 1
s macFas5.chr5                        371436 3 - 189454096 aca
i macFas5.chr5                     C 0 I 1
s calJac3.chr3                        302136 3 + 190850796 ACA
i calJac3.chr3                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e chlSab2.chr7                        327309 10 - 135778131 T
e papAnu2.chr5                        269231 10 - 178775436 T
e nomLeu3.chr7b                      1339862 0 - 115148730 I
e ponAbe2.chr4                     198129347 285 + 198332218 I

a score=300.000000
s hg38.chr4_KI270925v1_alt            337879 1 +    555799 g
s panTro4.chr4_AACZ03155287_random     30943 1 -     33815 g
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129632 1 + 198332218 g
i ponAbe2.chr4                     I 285 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e calJac3.chr3                        302139 0 + 190850796 C
e chlSab2.chr7                        327309 10 - 135778131 T
e papAnu2.chr5                        269231 10 - 178775436 T
e macFas5.chr5                        371439 1 - 189454096 I
e rheMac3.chr5                        375977 1 - 184069350 I
e nomLeu3.chr7b                      1339862 0 - 115148730 I

a score=671227.000000
s hg38.chr4_KI270925v1_alt            337880 318 +    555799 ttagtcctttgtatctgtgatttgtgcatgtgctgattcaagcaaccacgagtcaaaaatatttgcaaaaaaagccctttaaactgtattgaacatatacaaagtt-tttctttttattattctctaaatgacacagcgtaacaacgatttgcatagcatttacattgtagtaggtgttaccagtaatctagagatgatttaaagtatagggagaatgtgcatagtctacgctgaatactacacaactgcatatcagggacttgagcgt------------------ctagggattctggtatctggggg-aggtcctggatccaatttctcatgaat
s panTro4.chr4_AACZ03155287_random     30944 319 -     33815 ttagtcctttgtatctgtgagttgtgcatctgctgattcaagcagccacgagtcaaaaatatttgcaaaaaaagccctttaaactgtattgaacatgtacaaagtc-tttctttttattattctctaaatgacacagtgtaacaatgatttgcatagcatttacattgtagtaggtgttaccagtaatctagagatgatttaaagtatagggagaatgtgcataggctaggctgaatactacaccattgcatatcagggacttgagcgt------------------ctagggattctggtatctggggggaggtcgtggaaccaatttctcatgaat
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129633 317 + 198332218 ttagtccttcgtatctgtgagttgtgcatctgctgattcaagcagccacgagtcaaaaatatttgcaaaaaaa-ccctttaaactgtattgaacatgtacaaagtt-tttctttttattattctctaaatgacacagtataacaacgatttgcatagcatttacattgtaataggtgttaccagtaatctagagatgatttaaagtatagggagaatgtgcataggctacactgaatactacaccattgcatatcagggacttgagcat------------------ctagggattctggtatctggggg-aggtcctggaaccaatttctcatgaat
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                        375978 313 - 184069350 ttagtccttcgtatctgtgagttctgcatctgctgattcaaccagccacgagtcaaaaatatttgcaaaaaaagccctttaaattgtattgaacatgaacaatttg-----tttttatttttctctaaatgacacagtataacaacgatttgcatagcatttacattgtagtatatgttaccagtaatctagagatgatttaaagtatagggagaacgtgcataggttacgctgaatactacaccattgcatgtcagggacttgagtg-------------------ctagggactctggtatctggggg-aggtcctggaaccaattgctcataaat
i rheMac3.chr5                     I 1 C 0
s macFas5.chr5                        371440 313 - 189454096 ttagtccttcgtatctgtgagttctgcatctgctgattcaaccagccacgagtcaaaaatatttgcaaaaaaagccctttaaattgtattgaacatgaacaatttg-----tttttatttttctctaaatgacacagtataacaacgatttgcatagcatttacattgtagtatatgttaccagtaatctagagatgatttaaagtatagggagaacgtgcataggttacgctgaatactacaccattgcatgtcagggacttgagtg-------------------ctagggactctggtatctggggg-aggtcctggaaccaattgctcataaat
i macFas5.chr5                     I 1 C 0
s papAnu2.chr5                        269221 318 - 178775436 TTAGTCCTTTGTATCTGTGAGTTCTGCATCTGCTGATTCAACCAGCCACGagtcaaaaatatttgcaaaaaaagcCCTTTAAATTGTATTGAACAtgtacaatttgttttctttttatttttctctaaatgacACAGTATAACAACgatttgcatagcatttacattgtagtaTATGTTAccagtaatctagagatgatttaaagtatagggAGAACGTGCATAGGTTACGCTGAATACTACACCATTGCATGTCAGGGACTTGAGTG-------------------CTAGGGACTCTGGTATCTggggg-aggtcctggaaccaattgcTCATAAAT
i papAnu2.chr5                     T 10 C 0
s chlSab2.chr7                        327299 317 - 135778131 ttagtccttcgtatctgtgagttccgcatctgctgattcaaccagccacgagtcaaaaatatttgcaaaaaaagccctttacattgtattgaacatgtacaatttt-tttctttttatttttctttaaatgacacagtataacaatgatttgcatagcatttacattgtagtacatgttaccagtaatctagagatgatttaaagtatagggagaatgtgcataggttacgctgaatactacaccattgcatgtcagggacttgagtg-------------------ctagggactctggtatctgcggg-aggtcctggaaccaattgctcatgaat
i chlSab2.chr7                     T 10 C 0
s calJac3.chr3                        302139 332 + 190850796 Ccagttctccctattggtgagttctgcatctgctgattcacccagccatgaatcaaaaatatttgcaaagaaggccttttaacccgtattgaacacgtacaaagtt-tttcttttt-ttatgctgtaaatgacacag--taacaatgatttgcgtagtgttcacattgtgaaaggtacagcaagtgatctggagacgatttaaagtgcagggaggatgtgtacaggttacgccaagtaccacactg-tgcatgtcagggacttgggtggacactgagtagacagtaagcagggattctggtgtctagggg-aggtcctggagccagtttctcatgaat
i calJac3.chr3                     C 0 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e canFam3.chr16                     41636530 2073 +  59632846 I
e nomLeu3.chr7b                      1339862   0 - 115148730 I

a score=301313.000000
s hg38.chr4_KI270925v1_alt            338198 120 +    555799 atcgacagatgactgTATGTTGTATCTTGATGCAATGAATAAACAAAGCAGATAACAGTAACTGACATGGGGTAGAAGGTGAGGGGAAATGAAGGGGTTGCTATTTATATGTTTACATGG
s panTro4.chr4_AACZ03155287_random     31263 120 -     33815 accgacagatgactgTATGTTGTATCTTGATGCAATGAATAAACAAAGCAGATAACAGTAACTGACATGGGGTAGAAGGTGAGGGGAAATGAAGGGGTTGCTATTTACATGTTTCTATGG
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198129950 120 + 198332218 accgacagatgactgTATGTTGTATCCTGATGCAATGAATAAACAAAGCAGATAACAGTAACCGACATggggtagaaggtgaggggaaatgaaggggctgctatttacatgtttatatgg
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                        376291 120 - 184069350 actgatggatgactgtatgttgtatcttgatgcaatgaataaacaaagcagataacagtaactgacaagcggtagaaggtgagggaaaatgaaggggttgctatttacgtgtttatatgg
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                        371753 120 - 189454096 actgatggatgactgtatgttgtatcttgatgcaatgaataaacaaagcagataacagtaactgacaagcggtagaaggtgagggaaaatgaaggggttgctatttgcgtgtttatatgg
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                        269539 120 - 178775436 ACTGATGGATGACTGTATGTTGTATCTTGATGCAATGAATAAACAAAGCAGATAACAGTAACTGACAAGCGGTAGAAGGTGAGGGAAAATGAAGGGGTTGCTATTTACGTGTTTATATGG
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        327616 120 - 135778131 actgatggatgactgTATGTTGTATCTTGATGCAATGAATAAACAAAGCAGATAACAGTAACTGACAAGGGGTAGAAGGTGAGGGAAAATGAAGGGGTTGCTATTTACATGTTTGTATGG
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        302471 119 + 190850796 actgagggataactgTGTGTTGTGTCTTGATACAATGAATATAC-AAGCAGGTAACAGTAACTGACAAGAGGCAGAAGGTGAGGGAAAATGAAGGGGCTGCTATTTGTACGTTTATGTGG
i calJac3.chr3                     C 0 C 0
s canFam3.chr16                     41638603 112 +  59632846 atcaacaagtaaatatatggtctatc-tgatatagagaataaacagggcagagaaaggtaaggaagaagtgatagaagaatagtaaatatgagggacatgctatttacatgcc-------
i canFam3.chr16                    I 2073 C 0
e mm10.chr8                         41704988 1705 + 129401213 I
e nomLeu3.chr7b                      1339862   0 - 115148730 I

a score=1592029.000000
s hg38.chr4_KI270925v1_alt            338318 660 +    555799  
s panTro4.chr4_AACZ03155287_random     31383 660 -     33815  
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                     198130070 663 + 198332218  
i ponAbe2.chr4                     C 0 I 2800
s rheMac3.chr5                        376411 654 - 184069350  
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                        371873 654 - 189454096  
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                        269659 659 - 178775436  
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                        327736 658 - 135778131  
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                        302590 597 + 190850796  
i calJac3.chr3                     C 0 C 0
s mm10.chr8                         41706693 742 + 129401213  
i mm10.chr8                        I 1705 I 9
s canFam3.chr16                     41638715 689 +  59632846  
i canFam3.chr16                    C 0 C 0
e nomLeu3.chr7b                      1339862   0 - 115148730 I

a score=1183227.000000
s hg38.chr4_KI270925v1_alt           338978 418 +    555799 -CTGTTAACCAATGGCATC--------TGTATCCATTACAGAATTTAAAGGCA--GGGTATCATACAGCCAGTACCTTACAGTCTTCCCATTAGCAGCATTCAACACATCTGTCCAGGTAGTAAACCTAAGTGGCCCAGCTCTGGGCCATT-AAATTTTGATGTAACCCATTAAGG-AAACTTACG-GCCTTAGTTCAAAGGGCTGTTGCCATTGTGTCTGTGAGAGCAGTG-CTGCAGAGTGCATTTTATGCAAATCTCATAGATTT-TAATGAGTGCTCCTGCTTAATAAGCTAGTTAGACCATTTGGGCATTTACTTGagagtgaccacaaatgcctttttctgaaaccattttacagtgctaa-catttcactgaaatagcacttaacacggagccag-------------------------gcacacagtgagcactA--------------------------------------AGAGTGTTACGTGACT
s panTro4.chr4_AACZ03155287_random    32043 418 -     33815 -CAGTTAACCAATGGCATC--------TGTATCCATTACAGAATTTAAAGGAA--GGGCATCATACAGCCAGTACCTTACAATCTTCCCATTAGCAGCATTCAACACATCTGTCTGGGTAGTAAACCTAAGTGGCCCAGCTCTGGGCCATT-AAATTTTGATGTAACCCATTAAGG-AAACTTACG-GCCTTAGTTCAAAGGGCTGTTGCCATTGTGTCTGTGAGAGCGGCG-CTGCAGAGTGCACTTTATGCAAATCTCATAGATTT-TAATGAGTGATCCTGCTTAATAAGCTAGTTAGACCATTTGGGCATTTACTTGAGAGTGACCACAAATGCCTTTTTCTGAAACCATTTCACAGTGCTAA-CATTTCACTGAAATAGCACTTAACACGGAGCCAG-------------------------GCACACAGTGAGCATTA--------------------------------------AGAGTGTTACGTGACT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                       238826 419 - 198332218 -CTGTTAACCAATGGCATC--------TGTATCCATTACAGAATTTAAAGGAA--GGGCATCAAATAGCCGGTACCTTACAATCTTCCTATTAGCAGCATTCAACACATCTGTCTAGGTAGTAAACCTAAGTGGCCCAGTTCCGGGCCATTAAAATTTTGATGTAACCCATTAAGG-AAACTTACG-GCCTTAGTTCAAAGGGCTGTTGCCATTGTGTCTGTGAGAGCAGTA-CTGCAGAGTGCATTTTATGCAAATCCCGCAGATTT-TAATGAGTGATCCTGCGTAATAAGCTAGTTAGACCATTTGGGCATTTACTTGGGAGTGACCACAAATCCCTTTTTCTGAAACCATTTCACAGTGCTAA-CATTTAACTGAAATagcacttaacacagagccag-------------------------gcacacagtaagcacta--------------------------------------aaagtgttATGTCACT
i ponAbe2.chr4                     I 2276 C 0
s rheMac3.chr5                       377065 416 - 184069350 -CTGTTAACCAACGGCATC--------TGTATCCATTACAGAATTTAACGGAA--GGGCATCAAATAGCCGGTACCGTACAATCTTCC-ATTAGCAGCGTTCAGCACATCTGTCTAGGTAGTAAACCTAGGTAGCCCAGTTCTGGGCCATTAAAATTTTGATGTAACCCATTAACG-AAACTTACG-GCCTTAGTTCAAAGGGCTGTTGCCATTGTGTCTGTGAGAGCAGTA-CTGCAGAGTGCATTTTATGCAAATCTAATAGATTT-TAATGAGTGATCCTGCTTAATAAGCTAGTTAGACCATTCGGGCATTTACTTGAGAGTGACCACAAATCCCTTTGTCTGAAACCATTTCACAGCGCTAA-CATTTAACTGAAACAGCACTTAACACAACGCCAG-------------------------GCACACAGGGAGCACT----------------------------------------GAGTGTTGTGTTACT
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                       372527 416 - 189454096 -CTGTTAACCAACGGCATC--------TGTATCCATTACAGAATTTAACGGAA--GGGCATCAAATAGCCGGTACCGTACAATCTTCC-ATTAGCAGCGTTCAGCACATCTGTCTAGGTAGTAAACCTAGGTAGCCCAGTTCTGGGCCATTAAAATTTTGATGTAACCCATTAACG-AAACTTATG-GCCTTAGTTCAAAGGGCTGTTGCCATTGTGTCTGTGAGAGCAGTA-CTGCAGAGTGCATTTTATGCAAATCTAATAGATTT-TAATGAGTGATCCTGCTTAATAAGCTAGTTAGACCATTCGGGCATTTACTTGAGAGTGACCACAAATCCCTTTGTCTGAAACCATTTCACAGCGCTAA-CATTTAACTGAAACAGCACTTAACACAACGCCAG-------------------------GCACACAGGGAGCACT----------------------------------------GAGTGTTGTGTTACT
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                       270318 416 - 178775436 -ctgTTAACCAACGGCATC--------TGTATCCATTACAGAATTTAACGGAA--GGGCATCAAACAGCCGGTACCATACAATCTTCC-ATTAGCAGCGTTCAGCACATCTGTCTAGGTAGTAAACCTAGGTAGCCCAGTTCTGGGCCATTAAAATTTTGATGTAACCCATTAACG-AAACTTACG-GCCTTAGTTCAAAGGGCTGTTGCCATTGTGTCTGTGAGAGCAGTA-CTGCAGAGTGCGTTTTATGCAAATCTAATAGATTT-TAATGAGTGATCCTGCTTAATAAGCTAGTTAGACCATTCGGGCATTTACTTGAGAGTGACCACAAATCCCTTTGTCTGAAACCATTTCACAGCGCTAA-CATTTAACTGAAACAGCACTTAACACAACGCCAG-------------------------GCACACAGGGAGCACT----------------------------------------GAGTGTTATGTTACT
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                       328394 417 - 135778131 -CTGTTAACCAACGGCATC--------TGTATCCATTACAGAATTTAACGGAA--GGGCATCAAACAGCCGGTACCGTACAATCTTCC-ATTAGCAGCGTTCAGCACATCTGTCTAGGTAGTAAACCTA-GTGGCCCAGTTCTGGGCCATTAAAATTTTGATGTAACCCATTAACG-AAACTTACG-GCCTTAGTTCAAAGGGCTGTTGCCATTGTGTCTGTGAGAGCAGTA-CTGCAGAGTGCGTTTTATGCAAATCTAATAGATTT-TAATGAGTGATCCTGCTTAATAAGCTAGTTAGACCATTCGGGCATTTACTTGAGAGTGACCACAAATCCCTTTGTCTGAAACCATTTCACAGTGCTAA-CATTTAACTGAAACAGCACTTACCACAACGCCAG-------------------------GCACACAGGGAGCACTA--------------------------------------AGAGTGGTATGTTACT
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                       303187 404 + 190850796 -ATGTTAGACAATGGCGTC--------TGTGTTGGATACAGAATTTAAAGGAA--GGGCGTCACACTGCCAGTACCTTCCAATCTTCCCAATAGTAGCACTCAGCACATCTGTCTAGGTAGTAAACCTGAGTGGCCCATT------------AAATTTTGATGTATCCCATTAAGG-AAACTTATG-GCCTTAGTTCAAAGGGCTGTTGCCATTGTGTCTGTGAGCGTGCCG-CTGCAGAGTGCATTTCATGCAGATCTGATAGACTG-TAAGGAGTGACCCTGCTTAATCAGCTACTTAGATCATT-GGGCATTTACTTGAGACTGACCACAGACGCCTTTTTCTGAGACCATTTCACAGCTCTAA-CGTTTAACTGAAATAGCACTTAACA-GATGCCAG-------------------------GCAC-CAGAGAGCACTA--------------------------------------AGCATGCTACGTTACT
i calJac3.chr3                     C 0 C 0
s mm10.chr8                        41707444 482 + 129401213 -TAATTAAACAATGGCATAATGGCATGTGTATCGTCTATGGATTTAAAAAAAAGGGGGGATTTGAAAGCTGGTACCTGTGAATCTC---ATTAGCATCATTCA--ACATCTGTCCAGGTAGTAAATGTAAGTGGTCCAGTTCTAGGCTATTAAGTTTTTGATGTTACTCATTAAAG-CAACCTATGAGCCTTAGTTCAAAGGGCTGTTGCCATTGTGTCTGAGAAACTTG----TGCAGAGTGTATTTTATGTAAATTTAATAGATTTGTAATGAATGATTCTGTTCAATAATCTGGCTAGAACATCTGGCCATTCATGTGACAGTGACCACCAAAGTCTCTTTCTAAGACTCCTTTGAAGCACTAGTCAGTTGAGTGAA-----ACTTAAGAGAATGTCAGTAGTGAGCATGAAGTATGGGTTGATGCTGACAGTGAGAATTATGGTTCTTTTGTTTTTGTTTTTTAATGAtttatttttgagattataatataact
i mm10.chr8                        I 9 I 179
s canFam3.chr16                    41639404 408 +  59632846 AATATTAAACAATATCATG--------TGTGTCAATTATAGAATTTTAAGGAA--GAGCATTAGAAACCCAGTATTTGATAATCTTCTCATTAGCAGTACTTA--ACATCTGTCTAGGTACTAAATGTAAGTGGCCAAGTTCTGGGCCATTAAAATTTTGATGTAACCTATTAAGGCAAACTTATGGGCCTTAGTTCAAAGGG-TGTTGCCATTGTATCTGTGAGAGTGGCAGCAGTAGAGTA-----TATGCAAATCTAATAGATTTGTAATGAATGATTCTGCTTAATAAGCTAGTTAGACCATTTGAACATTTACTTGACAGTGGTCATAAATGTCTTTTTTTAAAAGTGATTT----TTCTAGTCATCTAACTGCAATAGCATTTAATA-----CCTA-------------------------GCACACAGCAAGCATTA--------------------------------------GGTTTATTTTGTTCTT
i canFam3.chr16                    C 0 I 10
e nomLeu3.chr7b                     1339862   0 - 115148730 I

a score=81275.000000
s hg38.chr4_KI270925v1_alt           339396 37 +    555799 GATGAC---------AGGGATGAAGAACAGGAG------------------------TCTTACCAGGTGT
s panTro4.chr4_AACZ03155287_random    32461 37 -     33815 GATGAC---------AGGGATGAAGAACAGGAG------------------------TCTTACCAGGTGT
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                       239245 37 - 198332218 GATGAC---------AGGGATGAAGAACAGGAG------------------------TCTTATCAGGTGT
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                       377481 37 - 184069350 GATGAC---------GGGGATGGAAAACAGGGG------------------------TCTTACCCAGTGT
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                       372943 37 - 189454096 GATGAC---------GGGGATGGAAAACAGGGG------------------------TCTTACCCAGTGT
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                       270734 37 - 178775436 GATGAC---------GGGGATGGAGAACAGGGG------------------------TCTTACCCAGTGT
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                       328811 37 - 135778131 GATGAC---------GGGGATGGAGAACAGGGG------------------------TCTTACCCAGTGT
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                       303591 36 + 190850796 GATGAT----------GGGATGAAGGACACGGG------------------------TCTTACAAGGTGT
i calJac3.chr3                     C 0 C 0
s mm10.chr8                        41708105 70 + 129401213 gatgaccatattgtatgggaaggccaactggtgtgttctttcctggaagaTGATGGTTCTTACGGGCTGT
i mm10.chr8                        I 179 C 0
s canFam3.chr16                    41639822 37 +  59632846 gatgat---------gatgatgatgatgatgTT------------------------TCTAACAAGGTGT
i canFam3.chr16                    I 10 I 30
e nomLeu3.chr7b                     1339862  0 - 115148730 I

a score=38444.000000
s hg38.chr4_KI270925v1_alt           339433 16 +    555799 --GTCAGTCTC--------------GATGCTC
s panTro4.chr4_AACZ03155287_random    32498 16 -     33815 --GTCAGTCTC--------------GATGCTC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                       239282 16 - 198332218 --GTCAGTCTC--------------GATGCTC
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                       377518 16 - 184069350 --GTCAGTCTC--------------GATGCTC
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                       372980 16 - 189454096 --GTCAGTCTC--------------GATGCTC
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                       270771 16 - 178775436 --GTCAGTCTC--------------GATGCTC
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                       328848 16 - 135778131 --GTCAGTCTC--------------GATGCTC
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                       303627 16 + 190850796 --GTCCATCTA--------------GATGCTC
i calJac3.chr3                     C 0 C 0
s mm10.chr8                        41708175 32 + 129401213 CAGTCAGATTCAAAGGAAATCACCAGATGCCA
i mm10.chr8                        C 0 C 0
e canFam3.chr16                    41639859 30 +  59632846 I
e nomLeu3.chr7b                     1339862  0 - 115148730 I

a score=2010486.000000
s hg38.chr4_KI270925v1_alt           339449 638 +    555799  
s panTro4.chr4_AACZ03155287_random    32514 637 -     33815  
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                       239298 637 - 198332218  
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                       377534 636 - 184069350  
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                       372996 636 - 189454096  
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                       270787 623 - 178775436  
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                       328864 636 - 135778131  
i chlSab2.chr7                     C 0 C 0
s calJac3.chr3                       303643 629 + 190850796  
i calJac3.chr3                     C 0 n 0
s mm10.chr8                        41708207 603 + 129401213  
i mm10.chr8                        C 0 C 0
s canFam3.chr16                    41639889 640 +  59632846  
i canFam3.chr16                    I 30 C 0
e nomLeu3.chr7b                     1339862   0 - 115148730 I

a score=416976.000000
s hg38.chr4_KI270925v1_alt           340087 177 +    555799 GCCTCCACCTTGAGGAGAGAACTATTTCCAGCCCCAGAGTCAAGCTGCCTCATTGCACGGAAGAGGG---AGTAAAATAAGA--AGCCTGGTGATGTGCTTATTGTCACAATTTGTGGTACAGCTGACACTTAGACTACATCTGCCCTTGAAGCTCAACTTCTTTG-CCCTACTCC-TGTGGTG
s panTro4.chr4_AACZ03155287_random    33151 177 -     33815 GCCTCCACCTTGAGGAGAGAACTATTTCCAGCCCCAGAGTCAAGCTGCCTCATTGCACGGAAGAGGG---AGTAAAATAAGA--AGCCTGGTGATGTGCTTATTGTCACAATTTGTGGTACAGCTGACACTTAGACTACATCTGCCCTTGAAGCTCAACCTCTTTG-CCCTACTCC-TGTGGTG
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                       239935 177 - 198332218 GCCTCCACCTTGAGGAGAGAACTATTTCCAGCTCCAGAGTCAAGCTGCCTCATTGCACGGAAGAGGG---GGTAAAATAAGA--AGCCTGGTGATATGCTTATTGTCACAATTTGTGGTACGACTGACACTTAGACTATTTCTGAGCTTGAAGCTCAACCTCTTTG-CCTTACTCC-TGTGGTG
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                       378170 177 - 184069350 GCCTCCACGTTGAGGAGAGAACTATTTCCAGCCCCAGAGTCAAGCTGCCTCATTGCACGGAAGAGGG---GCTAAAATAAGA--AGCCTGGTGAGGTGCTTATTGTCACAACTTGTAGTACAGCTGACACTTAGACTAAATCTGCCCTTGAAGCTCAACCTCTTTG-CCCTACTCC-TGTCGTG
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                       373632 177 - 189454096 GCCTCCACGTTGAGGAGAGAACTATTTCCAGCCCCAGAGTCAAGCTGCCTCATTGCACGGAAGAGGG---GCTAAAATAAGA--AGCCTGGTGAGGTGCTTATTGTCACAACTTGTAGTACAGCTGACACTTAGACTAAATCTGCCCTTGAAGCTCAACCTCTTTG-CCCTACTCC-TGTCGTG
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                       271410 177 - 178775436 GCCTCCACGTTGAGGAGAGAACTATTTCCAGCCCCAGAGTCAAGCTGCCTCATTGCACGGAAGAGGG---GGTAAAATAAGA--AGCCTGGTGAGGTGCTTATTGTCACAACTTGTGGCACAGCTGACACTTAGACTAAATCTGCCCCTGAAGCTCAGCCTCTTTG-CCCTGCTCC-TGTCGTG
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                       329500 179 - 135778131 GCCTCCACCTTGAGGAAAGAACTATTTCCAGCCCCAGAGTCAAGCTGCCTCATTGCACGGAAGAGGG---GTTAAAATAAGAAGAGCCTGGTGAGGTGCTTATTGTCACAACTTGTGGTACAGCTGACACTTAGACTAAATCTGCCCCTGAAGCTCAGCCTCTTTG-CCCTACTCC-TGTCGTG
i chlSab2.chr7                     C 0 C 0
s mm10.chr8                        41708810 176 + 129401213 GCTACCACCTTGAGCAGAGAGCAATTTCCAGCCCCAGAAGTGAGCTGCCTTGTT-----TAGGAGTGTCAGGTAAAATAAGA--AGTTTTATAATGTGTCTATCGTCACAATTTGTAGCACATCCCAGACTCCAATTATATCTATTGGTCAAACCCAGCCTCTTTGTTTCTGCTCC-TATGGTG
i mm10.chr8                        C 0 n 0
s canFam3.chr16                    41640529 171 +  59632846 TCCACTACCTTGAGCTAGAAACTATTTCCGGCTGTACAGGTGAGCTGCC---TTGTACATAAGAGGA---GGTAAAATACAA--AGATCGGCAATTAGCTCATCATCACAATCTATAGCACAGCTGAGATTCAGACTATACTTGA----GAAGCACTGCTTCCTTG-CCCTATTCCATAACTTG
i canFam3.chr16                    C 0 C 0
e calJac3.chr3                       304272   0 + 190850796 I
e nomLeu3.chr7b                     1339862   0 - 115148730 I

a score=232117.000000
s hg38.chr4_KI270925v1_alt           340264 122 +    555799 TTTCTTGGCATCTGGTATCATTTCAAAAGGATAAGAATGGCATAGAGAAGGTTTCTCATTGCTAAGCATGGAGTAGGAATATTTTAGTGAAATGTGTAAGTTTTGGGGCGGAAGTAAAAACA
s panTro4.chr4_AACZ03155287_random    33328 122 -     33815 TTTCTTGGCATCTGGTATCATTTCAAAAGGATAAGAATGGCATAGAGAAGGTTTCTCGTTGCTAAGCATGGAGTAGGAATATTTTAGTGAAGTGTGTAAGTTTGGGGGCGGAAGTAAAAACA
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                       240112 122 - 198332218 TTTCTTGGCATCTGGTATCATTTCAAAAGGATAAGAATGGCATAGAGAAGGTTTCTCGTTGCTAAGCATGGCGTAGTAATATTTTAGTGAAGTGTGTAACTTTTGTGGCTGAAGTAAAAACA
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                       378347 121 - 184069350 TGTCTTGGCATCTGGTATCATTTCAAAAGGGTAAGAATGGCATAGAGAAGGTTTCTTGTTGCTAAACATGGAGTAGGAATATTTTAGTGAAGTGTC-AAGTTTTGTGGCCAAAGTAAAAACA
i rheMac3.chr5                     C 0 I 6
s macFas5.chr5                       373809 121 - 189454096 TGTCTTGGCATCTGGTATCATTTCAAAAGGGTAAGAATGGCATAGAGAAGGTTTCTTGTTGCTAAACATGGAGTAGGAATATTTTAGTGAAGTGTC-AAGTTTTGTGGCCAAAGTAAAAACA
i macFas5.chr5                     C 0 I 6
s papAnu2.chr5                       271587 121 - 178775436 TGTCTTGGCATGTGGTATCATTTCAAAAGCGTAAGAATGGCATAGAGAAGGTTTCTCGTTGCTAAGCATGGAGTAGGACTATTTCAGTGAAGTGTC-AAGTTTTGTGGCCAAAGTAAAGACA
i papAnu2.chr5                     C 0 I 6
s chlSab2.chr7                       329679 122 - 135778131 TGTCTTGGCATCTGGTATCATTTCAAAAGGGTAAGAATGGCATAGAGAAGGTTTCTCGTTGCTGCGCATGGAGTAGGAATATTTTAGTGAAGTGTCTAAGTTTTGTGGCCAAAGTGAAAACA
i chlSab2.chr7                     C 0 I 6
s canFam3.chr16                    41640700 113 +  59632846 TTTCTT--------GTACTATTTCAGAAGTATAAGAATATCATAGAAAAAAATTCTAGTTTGTAAGTCTGGTGTGGAGACATTTTAGGGAAGTATAAAAGTTTTGTGGACAAAGGGACAAA-
i canFam3.chr16                    C 0 C 0
e mm10.chr8                        41708986   0 + 129401213 I
e calJac3.chr3                       304272   0 + 190850796 I
e nomLeu3.chr7b                     1339862   0 - 115148730 I

a score=6540.000000
s hg38.chr4_KI270925v1_alt           340386 15 +    555799 CCCCATCTGCTCTTC
s panTro4.chr4_AACZ03155287_random    33450 15 -     33815 CCCCATCTGCTCTTC
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                       240234 15 - 198332218 CCCTATCTGCTCTTC
i ponAbe2.chr4                     C 0 C 0
s canFam3.chr16                    41640813 15 +  59632846 GCCCATGTGCTTTTC
i canFam3.chr16                    C 0 C 0
e mm10.chr8                        41708986  0 + 129401213 I
e calJac3.chr3                       304272  0 + 190850796 I
e chlSab2.chr7                       329801  6 - 135778131 I
e papAnu2.chr5                       271708  6 - 178775436 I
e macFas5.chr5                       373930  6 - 189454096 I
e rheMac3.chr5                       378468  6 - 184069350 I
e nomLeu3.chr7b                     1339862  0 - 115148730 I

a score=524080.000000
s hg38.chr4_KI270925v1_alt           340401 284 +    555799 CACACTTGGAGAGAGCTGCACACAAAGCAGCA-ACTTGGCTCT-GGGC-GGCAGCTGGCTGAGGTCTCATGGTCTGGAGGACAGCCCCTGGCTTTCACATCGTCCGTGTCTTGCCATTTCTCTTTGGATAAGGCACAAATGTCTGAAGATATCCTCCAGGCCC--GAGG-----ACCTGCTCCTATTCTATCCAGTCTC-------------------------------------------------------GTCTTTCATGAGCCACTGTGCTTCAGCCA--CTGCTTTTCCTTCCACCCCTT----TGTCTTTCCTTTTTCCCAGGTATAAGGCCTTTGCACTTTCTAAAC
s panTro4.chr4_AACZ03155287_random    33465 284 -     33815 CACACTTGGAGAGAGCTGCACACAAAGCAGCA-ACTTGGCTCT-GGGC-GGCAGCTGGCTGAGGTCTCATGGTCTGGAGGACAGCCCCTGGCTTTCACATCGTCCGTGTCTTGCCATTTCTCTTTGGATAAGGCACAAATGTCTGAAGATATCCTCCAGGCCA--GAGG-----ACCTGCTCCTATTCTATCCAGCCTC-------------------------------------------------------GTCTTTCATGAGCCACTGTGCTTCAGCCA--CTGCTTTTCCTTCCACCCCTT----TGTCTTTCCTTTTTCCCAGGTATaaggcctttgcactttctaaac
i panTro4.chr4_AACZ03155287_random C 0 C 0
s ponAbe2.chr4                       240249 342 - 198332218 CACACTTGGAGAGAGTTGCCCACAAAGCAGCA-ACTTGGCTCT-GAGCAGGCAGCTGGCTGAGATCTCATGGTCTGGAGGACAGCCCCTGGCTTTCACATCATCCGTATCTTGCCATTTCTCTTTACATAAGGCACAAATGTCTGAAGATATCCTCCAGGCCCAAGAGA-----ACCTGCTCCTATTCTATCCAGTCTCCTCTTTCATGAGCTACTGTGCTTCAGCCACACTCTGCTCCTATTCTATCCAGTCTGTCTTTCATGAGCCACTGTGCTTCAGCCA--CTGCTTTTCCTTCCACTCCTT----TGTCTTTCCTTTTTCCCAGGTATAAGGCCTTTGCGCGTTCTAAAC
i ponAbe2.chr4                     C 0 C 0
s rheMac3.chr5                       378474 286 - 184069350 CACACTTGGAGTGAGCTGCCCGCAAAGCAGCACACTTGGTTCT-GGGTGGGCAGCTGGCTGAGGTCTCCTGGTCTGGAGGACAGATCCTGGCTTTTACATCTTCCATGTCTTGCTATTTCTCTTTGGATGAGGCACAAATGTCTGAAGATGTCCTCCAGGCCCAAGAGG-----ACCTGCTGCTATTCTATCCAGTCTT-------------------------------------------------------GTCTTTCGTGAGCcactgtgcttcagccacactgcttttccttccactc--------gtctttcctttttgccaggtacaaggcctttgcacgttctaaac
i rheMac3.chr5                     I 6 C 0
s macFas5.chr5                       373936 286 - 189454096 CACACTTGGAGTGAGCTGCCCGCAAAGCAGCACACTTGGTTCT-GGGTGGGCAGCTGGCTGAGGTCTCCTGGTCTGGAGGACAGATCCTGGCTTTTACATCTTCCATGTCTTGCTATTTCTCTTTGGATGAGGCACAAATGTCTGAAGATGTCCTCCAGGCCCAAGAGG-----ACCTGCTGCTATTCTATCCAGTCTT-------------------------------------------------------GTCTTTCGTGAGCcactgtgcttcagccacactgcttttccttccactc--------gtctttcctttttgccaggtacaaggcctttgcacgttctaaac
i macFas5.chr5                     I 6 C 0
s papAnu2.chr5                       271714 282 - 178775436 CACACTTGGAGTGAGCTGCCCGCAAAGCAGCACACTTGGTTCT--GGTGGGCAGCTGGCTGAGGTCTCCTGGTCTGGAGGACAGATCCTGGCTTTTA-ATCTTCCATGTCTTGCCATTTCTCTTTGGATGAGGGAGAAATGTCTGAAGATGT--TCCAGGCCCAAGAGG-----ACCTGCTGCTATTCTATCCAGTCTC-------------------------------------------------------GTCtttcatgagccactgtgcttcagccacGCTGCTTTTCCTTCCACTC--------GTCTTTCCTTTTTCCCAGGTACAAGGCCTTTGCACGTTCTAAAC
i papAnu2.chr5                     I 6 C 0
s chlSab2.chr7                       329807 285 - 135778131 CACACTTGGAGTGAGCTGCCCACAAAGCAGCACACTTGGTTCT-GGGTGGGCAGCTGGCTGAGGCCTCCTGGTCTGGAGGACAGATCCTGGCTTTTA-ATCTTCCACGTCTTGCCATTTCTCTTTGGATGAGGCAGAAATGTCTGAAGATGTCCTCCAGGCCCAAGAGG-----ACCGGCTGCTAttctatccagtctc-------------------------------------------------------gtctttcgtgagccactgtgcttcagccacactgcttttccttccactc--------gtctttcctttttcccaggtacaaggcctttgcacgttctaaac
i chlSab2.chr7                     I 6 C 0
s canFam3.chr16                    41640828 297 +  59632846 CATGGCTGAAGTGAGCTGCCCAGAAAACAGCAAACTTCATTTTTAAGTGAACAGTTGGTTTAAGTCTATTGGTAT-GAGGATAGctcctggcctataaaccttcagtgtcttgacatttctctttagatgaagcacaaattccttaaaatggtttccaggcctatgtgatctgtacctgct--tgttttatctcatctc-------------------------------------------------------ttctttcacaagctcctctgctccacttagaactgtcttccttctatcccctatagtctctttgcttcttcctgctataaagacctttgcacattctagac
i canFam3.chr16                    C 0 n 0
e mm10.chr8                        41708986   0 + 129401213 I
e calJac3.chr3                       304272   0 + 190850796 I
e nomLeu3.chr7b                     1339862   0 - 115148730 I

a score=6111.000000
s hg38.chr4_KI270925v1_alt           340685 3 +    555799 CCT
s panTro4.chr4_AACZ03155287_random    33749 3 -     33815 cct
i panTro4.chr4_AACZ03155287_random C 0 n 0
s ponAbe2.chr4                       240591 3 - 198332218 CCT
i ponAbe2.chr4                     C 0 n 0
s rheMac3.chr5                       378760 3 - 184069350 cct
i rheMac3.chr5                     C 0 C 0
s macFas5.chr5                       374222 3 - 189454096 cct
i macFas5.chr5                     C 0 C 0
s papAnu2.chr5                       271996 3 - 178775436 CCT
i papAnu2.chr5                     C 0 C 0
s chlSab2.chr7                       330092 3 - 135778131 cct
i chlSab2.chr7                     C 0 C 0
e mm10.chr8                        41708986 0 + 129401213 I
e canFam3.chr16                    41641125 0 +  59632846 I
e calJac3.chr3                       304272 0 + 190850796 I
e nomLeu3.chr7b                     1339862 0 - 115148730 I

a score=2800.000000
s hg38.chr4_KI270925v1_alt    340688 1 +    555799 c
s panTro4.chr4             193044029 1 + 193495092 c
i panTro4.chr4             I 23869 C 0
s ponAbe2.chr4             198133533 1 + 198332218 c
i ponAbe2.chr4             I 2800 C 0
s nomLeu3.chr7b            113814001 1 + 115148730 c
i nomLeu3.chr7b            I 10691 C 0
s rheMac3.chr5                378763 1 - 184069350 c
i rheMac3.chr5             C 0 C 0
s macFas5.chr5                374225 1 - 189454096 c
i macFas5.chr5             C 0 C 0
s papAnu2.chr5                271999 1 - 178775436 C
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7                330095 1 - 135778131 c
i chlSab2.chr7             C 0 n 0
e mm10.chr8                 41708986 0 + 129401213 I
e canFam3.chr16             41641125 0 +  59632846 I
e calJac3.chr3                304272 0 + 190850796 I

a score=1911.000000
s hg38.chr4_KI270925v1_alt    340689 1 +    555799 t
s panTro4.chr4             193044030 1 + 193495092 t
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198133534 1 + 198332218 t
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113814002 1 + 115148730 t
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5                378764 1 - 184069350 t
i rheMac3.chr5             C 0 n 0
s macFas5.chr5                374226 1 - 189454096 t
i macFas5.chr5             C 0 n 0
s papAnu2.chr5                272000 1 - 178775436 T
i papAnu2.chr5             C 0 n 0
e mm10.chr8                 41708986 0 + 129401213 I
e canFam3.chr16             41641125 0 +  59632846 I
e calJac3.chr3                304272 0 + 190850796 I
e chlSab2.chr7                330096 0 - 135778131 I

a score=313066.000000
s hg38.chr4_KI270925v1_alt    340690 623 +    555799  
s panTro4.chr4             193044031 623 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198133535 623 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113814003 616 + 115148730  
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 41708986   0 + 129401213 I
e canFam3.chr16             41641125   0 +  59632846 I
e calJac3.chr3                304272   0 + 190850796 I
e chlSab2.chr7                330096   0 - 135778131 I
e papAnu2.chr5                272001   0 - 178775436 I
e macFas5.chr5                374227   0 - 189454096 I
e rheMac3.chr5                378765   0 - 184069350 I

a score=11729.000000
s hg38.chr4_KI270925v1_alt    341313 4 +    555799 AAGa
s panTro4.chr4             193044654 4 + 193495092 AAGa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198134158 4 + 198332218 AAGa
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113814619 4 + 115148730 AAGA
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189110517 4 + 189454096 AAGA
i macFas5.chr5             I 30648 C 0
s papAnu2.chr5             178529190 4 + 178775436 AAGA
i papAnu2.chr5             I 25755 C 0
s chlSab2.chr7             135469871 4 + 135778131 AAGa
i chlSab2.chr7             I 21836 C 0
s calJac3.chr3             190576066 4 - 190850796 agga
i calJac3.chr3             I 29542 C 0
s canFam3.chr16             18013385 4 -  59632846 AGGA
i canFam3.chr16            I 21658 C 0
e mm10.chr8                 41708986 0 + 129401213 I
e rheMac3.chr5                378765 0 - 184069350 I

a score=648.000000
s hg38.chr4_KI270925v1_alt    341317 3 +    555799 --gag
s panTro4.chr4             193044658 3 + 193495092 --gag
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198134162 3 + 198332218 --gag
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113814623 3 + 115148730 --GAG
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189110521 3 + 189454096 --GCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178529194 3 + 178775436 --GCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135469875 3 + 135778131 --gcg
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190576070 3 - 190850796 --gag
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87709537 3 - 129401213 --GAA
i mm10.chr8                I 20787 C 0
s canFam3.chr16             18013389 3 -  59632846 TAg--
i canFam3.chr16            C 0 C 0
e rheMac3.chr5                378765 0 - 184069350 I

a score=1272485.000000
s hg38.chr4_KI270925v1_alt    341320 369 +    555799 gcctaagaaaccatctaggccaatgctatggttttggagttcaggacattgtggcttagagacaataatggatctgcctaaaatcacaacacaaactagtaccagttcttgaatgaaaatgtaggtcttctgattccta-gccaaatgcttt-----ttATAAGAATGAAAATTTTGTGTCCTTGGAAGGCCTAAGGCATTTTCCCAGAGTAACTTAGAAGAGTCGGGCTCC--ATGAATAATTTAGTAATATAGAAATAAGATTTTTTAAA--ATGTCTAAAATTGACTGCATGACCCTGGATATAAAGTATAAAAGCAGAAGACAGATGTGATGTGAGGCTGGCAACAAGTCGTGCCATGCTCTATGTACCCACACT
s panTro4.chr4             193044661 369 + 193495092 gcctaagaaaccatctaggccaatgctgtggttttggagtccaggacattgtggcttagagacaataatggatctgcctaaaatcacaacacaaactagtaccagttcttgaatgaaaatgtaggtcttctgattccta-gccaaatgcttt-----ttGTAAGAATGAAAATTTTGTGTCCTTGGAAGGCCTAAGGCATTTTCCCAGAGTAACTTAGAAGAGTCTGGCTCC--ATGAATAATTTAGTAATATAGAAATAAGATTTTTTAAA--ATGTCTAAACTTGACTGTATGACCCTGGATATAAAGTATAAAAGCAGAAGATAGATGTGATGTGAGGCTGGCAACAACTCGTGCCATGCTCTATGTACCCACACT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198134165 362 + 198332218 gcctaagaaaccatttaggacaacgctgtggttttggagttcaggacattgtggcttagagacaataatggatctccctaaaatcacaacacaaactagtaccagttcttgaatgaaaatgtaggtcttctgattccta-gccaaatgcttt-----ttATAAGAATGAAAATTTTGTGTCCTTGGAAGGCCTAAGGCATTTTCCCAGAGTAACTTAGAAGAGTCTGGCTCC--ATGAATAATTTAGTAATATAGAAATAAGATTTTAAAAA--ATGTCTAAAATTGACTGTATGACCCTGGATATAAAGTATAAAAGCAGAAGACA----TGATGTGAGGCTGG---CAAGTCGTGCCGTGCTCTATGTGCCCACATT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113814626 373 + 115148730 ACCTAAGAAACCATCCAGGCCAATGCTGTGG-tttggagttcaggacattgtggcttagagacaacaatggatctgcctaacatcacaacaaaaactagtaccagttcttgaatgaaaatgtaggtcttctgattccta-gccaaatgctttt--tATTATAAGAAGGAAAATTTTGTGTCTGTGGAAGGCCTAAGGCATTTTCCCAGAGTAACTTAGAAGAGTCTGGCTCCTAATGAATAATTTAGTAATATAGAAATAAGATTTTTAAAA--ATATCTAAAATTGACTGTATGACCCTGGATATAAAGTATAAAAGCAGAAAACAGATGTGATGTGAGGCTGGCAACAAGTCGTGCTGTGCTCTAAGTACCCACACT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183718075 376 + 184069350 Gcctaagaaaccatctcagccaatgctgcggttttggagttcaggacattgtggctcagagacaataatggatctgcctaacatcacaacacaaactagtaccagttcttgaatgaaaatgtaggtcttctgaatccta-gccAAATGTTTTT--TATTATAAGAATGAAAATTTTGTGTCCTTGGAAGGCCTAAGGTATTTTCCCAGAGTAACTTCAAAGAGTCTGGTTCCTAAAGAATAATTTAGTAATATAGAAATAAGATTTTAAAAAATATGTCTAAAATTGACTGTGTGACCCTGGATATAAAGTATAAAAGCAGAAGACAGATGTGATGTGAGGCTGGCAACAAGTCGTGCCATGCTCTGTGTACCCACACT
i rheMac3.chr5             I 27496 C 0
s macFas5.chr5             189110524 376 + 189454096 Gcctaagaaaccatctcagccgatgctgcggttttggagttcaggacattgtggctcagagacaataatggatctgcctaacatcacaacacaaactagtaccagttcttgaatgaaaatgtaggtcttctgaatccta-gccaaatgctttt--tATTATAAGAATGAAAATTTTGTGTCCTTGGAAGGCCTAAGGTATTTTCCCAGAGTAACTTCAAAGAGTCTGGTTCCTAAAGAATAATTTAGTAATATAGAAATAAGATTTTTAAAAATATGTCTAAAATTGACTGTGTGACCCTGGATATAAAGTATAAAAGCAGAAGACAGATGTGATGTGAGGCTGGCAACAAGTCGTGCCATGCTCTGTGTACCCACACT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178529197 376 + 178775436 GCCTAAGAAACCATCTCGGCCGATGCTGCGGTTTTGGAGTTCAGGACATTGTGGCTCAGAGACAATAATGGATCTGCCTAACATCACAACACAAACTAGTACCAGTTCTTGAATGAAAATGTAGGTCTTCTGAATCCTA-GCCAAATGCTTTT--TATTATAAGAATGAAAATTTTGTGTCCTTGGAAGGCCTAAGGTATTTTCCCAGAGTAACTTCGAAGAGTCTGGTTCCTAAAGAATAATTTAGTAATatagaaataagatttttaaaaatatgtctaaaatTGACTGTGTGACCCTGGATATAAAGTATAAAAGCAGAAGACAGATGTGATGTGAGGCTGGCAACAAGTCGTGCCATGCTCTGTGTACCCACACT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135469878 376 + 135778131 gcctaagaaaccatctcggccaatgctgcagttttggagttcaggacattgtggctcagagacaataatggatctgcctaacatcacaacacaaactagtaccagttcttgaatgaaaatgtaggtcttctgaatccta-gccaaatgctttt--tATTATAAGAATGAAAATTTTGTGTCCTTGGAAGGCCTAAGGTATTTTCTCAGAGTAACTTCGAAGAGTCTGGTTCCTAAAGAATAATTTAGTAATATAGAAATAAGATTTTTAAAAATATGTCTAAAATTGACTGTGTGACCCTGGATATAAAGTATAAAAGCAGAAGACAGATGTGATGTGAGGCTGGCAACAAGTCGTGCCATGCTCTGTGTACCCACGCT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190576073 375 - 190850796 gcctaagacaccatgtaggccaatgctgtgggtttggagttcaggacattgtggcttagagacaataatggatccgtgtaacatcacagcacaaactagtatcagttcttgaatgaaaatgtcagtcttctgattcctg-cccaggtgctttT--AATTATAAGAATGACAA-TTTGTGTCCTCGGAAGGCCTAAGGTATTTTCCCGGAGTGACTTAGAAGACCCTGGCTCCTAATTAATAATTCAGTAATATAGAAATGAGATTCCTAAAAATATGTCTAAAATTGACCGTGTGACCCTGGATATAAAGTACGCAAGCAGGAGACAGATGTGGTGTGAGGCTGGCAACAAGCCGTGCCACGCTCTATGTGCCCACACT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87709540 342 - 129401213 ACCTAAGAAAACATGTAGTTTGATAATGGGATTTGGCACTCAGAAACATTG----CTAAGGA-----------CTCCCTGGGGTCACAATATGACTTGGTAAc-------------aaacacagatttttctgattcta-gccaaatgctttttgtactgtaAAAGTGGTCATTATATGACCTC---AAGACTAAGGCATTGTCCCAGAGACTCTTAGAA---CTTGACTCCTTCTGACTCATTTAGTA--ATAACAATGAGCTGGTTTTTAATATACTTGGAATTGACTTTGTGATCCTGGGTATAAAGCCTTAAAAAAAGGTCAGGGGGTGACATGAACCTATTAGTTAACCAAGTCATACGACATATATCCATGCT
i mm10.chr8                C 0 I 1828
s canFam3.chr16             18013392 362 -  59632846 gtctaagagaccatctaggtcaaagttgtggttttaaagtttaggagactgtggctcaaagacattaaatgaactac------------tgtctattagtaccagagcttgaaccaaaaggtaggttttcctgattctattccaaatgcttttc-tactgtaAGACTAATAATTTTGTGTTCTTGGGAAGCCAAAGTTATTGTCCCAGAATAACTTAAAAGAATGTTAATCCTCGTGAATCATTT-GAAATACAGATATAAGGTGGTTTTTAATGTGTCTAGAATTGATCATGTGACCCTT--TATAAAACA-GTAAGCCAGAGACAGATGTGAAATAAAGCTAGCAATAAGCCATGTCATGCTTAATATACCCAAGCT
i canFam3.chr16            C 0 C 0

a score=1272835.000000
s hg38.chr4_KI270925v1_alt    341689 446 +    555799  
s panTro4.chr4             193045030 449 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198134527 450 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113814999 438 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183718451 442 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189110900 441 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178529573 441 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135470254 441 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190576448 480 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18013754 427 -  59632846  
i canFam3.chr16            C 0 I 1657
e mm10.chr8                 87709882 1828 - 129401213 I

a score=6712.000000
s hg38.chr4_KI270925v1_alt    342135 3 +    555799 GTG
s panTro4.chr4             193045479 3 + 193495092 gtt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198134977 3 + 198332218 gtt
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113815437 3 + 115148730 gtt
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183718893 3 + 184069350 GTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189111341 3 + 189454096 GTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178530014 3 + 178775436 GTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135470695 3 + 135778131 GTT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190576928 3 - 190850796 CTT
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87709882 1828 - 129401213 I
e canFam3.chr16             18014181 1657 -  59632846 I

a score=84984.000000
s hg38.chr4_KI270925v1_alt    342138 23 +    555799 TGTAATTCTGGAATAGATCCTAC
s panTro4.chr4             193045482 23 + 193495092 TGTAATTCTGGAATAGATCCTAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198134980 23 + 198332218 TGTAATTCTGGAATAGATCCTAC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113815440 23 + 115148730 TGTAATACTGGAATAGCTCCTAT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183718896 23 + 184069350 TGTAATTCTGGAATAGCTCCTAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189111344 23 + 189454096 TGTAATTCTGGAATAGCTCCTAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178530017 23 + 178775436 TGTAATTCTGGAATAGCTCCTAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135470698 23 + 135778131 TGTAATTCTGGAATAGCTCCTAC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190576931 23 - 190850796 TGCAATTCTGGAAGAGCTCCTGC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18015838 23 -  59632846 TGTAATTCTAGAATAGCTCCTAC
i canFam3.chr16            I 1657 C 0
e mm10.chr8                 87709882 1828 - 129401213 I

a score=303513.000000
s hg38.chr4_KI270925v1_alt    342161 105 +    555799 TGACCTtgaagcaggcccaa-----tactcccacagcgtg-ttcttttgtataaacatagacattgactcttccgctcttaaagcttgaaacttgtatttgtttcatctga
s panTro4.chr4             193045505 105 + 193495092 TGACCTtgaagccagcccaa-----tactcctatagtgtg-ttctttcgtataaacatagacattgactcttccgctcttaaagcttgaaacttgtatttgtttcatctga
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198135003 106 + 198332218 TGACCTtgaagccagcccaa-----tactcccatagtgtgttttttttgtataaacatagacattgactcttccgctcttaaagcttgaaacttgtatttgtttcatctga
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113815463 110 + 115148730 TGACCTtgaagctggcccaatggagtactcctatagtgtg-ttcttttgtataaacatagacattgactcttctgctgttaaaacttgaaacttgtatttgtttcatctga
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183718919 105 + 184069350 TGACCTtgaagctggcccaa-----tactcccatagcgtg-ttcttttgtataaatatagacattgactcttctgctgttaaagcttgaaacttgtgtttgttttatctga
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189111367 105 + 189454096 TGACCTtgaagctggcccaa-----tactcccatagcatg-ttcttttgtataaatatagacattgactcttctgctgttaaagcttgaaacttgtgtttgttttatctga
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178530040 105 + 178775436 TGACCTTGAAGCTGGCCCAA-----TACTCCCATAGCGTG-TTCTTTTGTATAAATATAGACATTGACTCTTCTGCtgttaaagcttgaaacttgtgtttgttttatctga
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135470721 105 + 135778131 TGACGTtgaagctggcccaa-----tactcccatagcgtg-ttcttctgtataaatatagacattgactcttctgctgttaaagcttgaaacttgtgtttgttttatctga
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190576954 105 - 190850796 TGACCTtgaaaacagcccaa-----tactcccaaagactg-ttcttttgtgtaaacatagacactgactcttctgctggtaaggcttgaaacttttatttgttttatctga
i calJac3.chr3             C 0 I 401
e mm10.chr8                 87709882 1828 - 129401213 I
e canFam3.chr16             18015861   0 -  59632846 C

a score=73612.000000
s hg38.chr4_KI270925v1_alt    342266 35 +    555799 gttctttcctcaggaaaggaccttcaggcctctcc
s panTro4.chr4             193045610 35 + 193495092 gttctttcctcaggaaaggaccttcaggcctctcc
i panTro4.chr4             C 0 I 5
s ponAbe2.chr4             198135109 35 + 198332218 gttctttcctcaggaaaggaccttcaggcctcttc
i ponAbe2.chr4             C 0 I 7
s nomLeu3.chr7b            113815573 35 + 115148730 gttctttcctcaggaaaagacctttaggcctctcc
i nomLeu3.chr7b            C 0 I 14
s rheMac3.chr5             183719024 35 + 184069350 gttcttgtctcacgaaaggacctacaggcctcttc
i rheMac3.chr5             C 0 I 54
s macFas5.chr5             189111472 35 + 189454096 gttcttgtctcacgaaaggacctacaggcctcttc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178530145 35 + 178775436 gttcttGTCTCACGAAAGGACCTACAGGCCTCTTC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135470826 35 + 135778131 gttcttgtctcacaaaaggacctacacgcctcttg
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87709882 1828 - 129401213 I
e canFam3.chr16             18015861  0 -  59632846 C
e calJac3.chr3             190577059 401 - 190850796 I

a score=53916.000000
s hg38.chr4_KI270925v1_alt    342301 46 +    555799 aaaaaaaaaaaaaaaagcattaaagaactgaaactcaccagatgag
s panTro4.chr4             193045650 46 + 193495092 aaaaaaaaaaaaaaaagcattgaagaactgaaactcaccagatgag
i panTro4.chr4             I 5 C 0
s ponAbe2.chr4             198135151 46 + 198332218 aaaaaaaaaaaaaaaagcattaaagaactgaaactcaccagatgag
i ponAbe2.chr4             I 7 C 0
s nomLeu3.chr7b            113815622 46 + 115148730 aaaaaaaaaaaaaaaagcattaaagaactgcaactcaccagatcag
i nomLeu3.chr7b            I 14 C 0
s macFas5.chr5             189111507 44 + 189454096 --ggggtggggggtacgtattaaagaactaaaactcaccggatcag
i macFas5.chr5             C 0 I 10
s papAnu2.chr5             178530180 44 + 178775436 --GGGGTGGGGGGTACGTATTAAAGAACTAAAACTTACCGGATCAG
i papAnu2.chr5             C 0 I 10
s chlSab2.chr7             135470861 44 + 135778131 --ggggtggggggtacatattaaagaactaaaactcaccggatcag
i chlSab2.chr7             C 0 I 10
e mm10.chr8                 87709882 1828 - 129401213 I
e canFam3.chr16             18015861  0 -  59632846 C
e calJac3.chr3             190577059 401 - 190850796 I
e rheMac3.chr5             183719059 54 + 184069350 I

a score=515739.000000
s hg38.chr4_KI270925v1_alt    342347 231 +    555799 ac----------ctccttgttcctccctagttcgtgtttcctacacattgttacatttcttgcctgttgtataaaaccccatttttagtcagtcagggcgatggatttgaggctgagctcccatctcctcagctgcagcaccagatgaaag-cttcttccctggaaacactcaccatctcagtgattggctttctgtgcagtgagc----agcaggacttagaccaaacccatggtgttttggtaa
s panTro4.chr4             193045696 245 + 193495092 gccaccagatgactccttgttcctccctagttcgtgtttcctacacattgttacatttcttgcctgttgtataaaaccccatttttagtcagtcagggcgatggatttgaggctgagctcccatctcctcagctgcagcaccggatgaaag-cttcttccctggaaacactcaccatctcagtgattggctttctgtgcagtgagcagcaagcaggacctagaccaaacccatggtgttttggtaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198135197 241 + 198332218 gccaccagatgcctccttgttcctccctagttcgtgtttcctacacattgttacatttcttgcctgttgtataaaaccccatttttagtcagtcagggcgatggatttgaggctgagctcccatctcctcagctgcagcactagatgaaag-cttcttccctggcgacactcaccatctcagtgattggctttctgtgcagtgagc----agcaggacttagaccaaacccatggtgtttcggtaa
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113815668 240 + 115148730 gccaccagatgcctccctgttcctccctagttcgtgtttcctacacattgttacgtttcttgcctgttgtatgaaaccctatttttagtcagtcagggcgatggatttgaggctaagctcccatttccttggctgcagcactggatgaaag-cttcttcgctggcaacactcaccatctcagtgattggctttctgtgcagtgag-----agcaggacttagaccacacccatggtgtttcagtaa
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183719113 225 + 184069350 ----------gcctccttgttcctcccttattcatgtttcctacacactgttacatttcttgcttgttgtataaaaccctatttttagtcagtcagggagatggatttgaggctcagctcccatctcctcagctgcagcacccgatgaaagccttcttccttggcaatcctcatcatc-------ttggctttctgtgcagtgagc----agcaggacttagaccaaacccatagtgttttggtga
i rheMac3.chr5             I 54 C 0
s macFas5.chr5             189111561 225 + 189454096 ----------gcctccttgttcctcccttattcatgtttcctacacactgttacatttcttgcttgttgtataaaaccctatttttagtcagtcagggagatggatttgaggctcagctcccatctcctcagctgcagcacccgatgaaagccttcttccttggcaaccctcatcatc-------ttggctttctgtgcagtgagc----agcaggacttagaccaaacccatagtgttttggtga
i macFas5.chr5             I 10 C 0
s papAnu2.chr5             178530234 225 + 178775436 ----------GCCTCCTTGTTCCTCCCTAATTCATGTTTCCTACACACTGTTACATTTCTTGCTTGTTGTATAAAACCCTATttttagtcagtcagggagatggatttgaggctcagctcccatctcctcagctgcagcacctgatgaaagccttcttccttggcaaccCTCATCAtc-------ttggctttctgtgcagtgagc----agcagGACTTAGACCAAACCCATAGTGTTTTGGTGA
i papAnu2.chr5             I 10 C 0
s chlSab2.chr7             135470915 225 + 135778131 ----------gcctccttgttcctccctaattcatgtttcctacacactattacatttcttgcttgttgtataaaaccctatttttagtcagtcagggagatggatttgaggctgagctcccatctcctcggctgcagcacccgatgaaagccttcttccttggcaaccctcatcatc-------ttggctttctgtgcagtgagc----agcaggactcagaccaaacccatagtgttttggtga
i chlSab2.chr7             I 10 C 0
e mm10.chr8                 87709882 1828 - 129401213 I
e canFam3.chr16             18015861   0 -  59632846 C
e calJac3.chr3             190577059 401 - 190850796 I

a score=589242.000000
s hg38.chr4_KI270925v1_alt    342578 214 +    555799 caACCTCACCAAAATA-GATGGGCACACACACAAGCCTTTAAAGATACAAAGTTAAACGGATAGTATGgatcattcagtatagaggaaacagcatagcaaatgtatagagacggaaaattactagatatgttccagga-----------gcaaCATGC----------AAATTCCACTGCCAGTTTTGGCTGTGAGGTCAAACAGATCtga-tctgaat-----gtttgcattcctccaaaa
s panTro4.chr4             193045941 214 + 193495092 caACCTCACCAAAATA-GATGGGCACACACACAAGCCTTTAAAGATACAAAGTTAAATGGATAGTATGGATCATTCAGTATAGAGGAAACAGCATAGCAAATGTATAGAGATGGAAAATTACTAGATATGTTCCAGGA-----------GCAACATGC----------AAATTCCACTGCCAGTTTTGGCTGTGAGGTCAAACAGATCtga-tctgaat-----gtttgcattcctccaaaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198135438 215 + 198332218 caACCTCACCAAAATAGGATGGGCACACATACAAGCCTTTAAAGATACAAAGTTAAATGGATAGTATGGATCATTCAGTATAGAGGAAACAGCATAGCAAATGTATAGAGATGGAAAATTACTAGATATGTTCCAGGA-----------GCAACATGC----------AAATTCCACTGCCAGTTTTGGCTGTGAGGTCAAACAGATCtga-tctgaat-----gtttgcattcctccaaaa
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113815908 215 + 115148730 caACCTCACCAAAATAGGATGGACACACACGCAAGCCTTTAAAGATACAAAGTTAAACGGATAGTATGGATCATTCAGTATAGAGGAAACAGCATAGCAAATGTATAGAGATGGAAAATTACCAGATATGTTCCAGGA-----------GCAACATGC----------AAATTCCACTTCCAGTTTTGGCTCTGAGGTCAAACAGATCtga-tctgaat-----gtttgcattcctccaaaa
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183719338 215 + 184069350 caGCCTCACCAAAATAGGATGGGCACACACGCAAGCCTTTAAAGACACAAAGTTAAGCAGATGGTATGGATCATTCAGTATAGAGGAAACAGCATAGCAAATGTATAGAGATGGAAAATTGCTAGATATGTTCCAGGA-----------ACAACATGC----------AAATTCCACTGCCCATTTTGGCTCTGAGGTCAAACGGATCtga-tctgaat-----gtttgcattcctccaaaa
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189111786 215 + 189454096 caGCCTCACCAAAATAGGATGGGCACACACGCAAGCCTTTAAAGACACAAAGTTAGGTAGATGGTATGGATCATTCAGTATAGAGGAAACAGCATAGCAAATATATAGAGATGGAAAATTGCTAGATATGTTCCAGGA-----------ACAACATGC----------AAATTCCACTGCCCGTTTTGGCTCTGAGGTCAAACGGATCtga-tctgaat-----gtttgcattcctccaaaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178530459 215 + 178775436 CAGCCTCACCAAAATAGGATGGGCACACACGCAAGCCTTTAAAGACACAAAGTTAAGCAGATGGTATGGATCATTCAGTATAGAGGAAACAGCATAGCAAATGTATAGAGATGGAAAATTACTAGATATGTTCCAGGA-----------ACAACATGC----------AAATTCCACTGCCAGTTTTGGCTCTGAGGTCAAACGGATCTGA-TCTGAAT-----GTTTGcattcctccaaaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135471140 215 + 135778131 caGACTCACCAAAATAGGATGGGCACACACGCAAGCCTTTAAAGACACAAAGTTAAGCAGATGGTATGGATCATTCAGTATAGAGGAAGCAGCATAGCCAATGTATAGAGATGGAAAATTACTAGATATGTTCCAGGA-----------ACAACATGC----------AAATTCCACTGCCAGTTTTGGCTCTGAGGTCAAACGGATCtga-tctgaat-----gtttgcattcctccaaaa
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             18015861 237 -  59632846 CGATCTCACCAAAGTAGGAGAGGCATACAAATCAGCATTTGAAAATGAAAAGTTATATGGGCAGTAGGAGT--TTCAGTTTGGAGGAAATATA--AGCAAATATATAGAAATGGAAATTTATTAG-TATGTTCCAAGAAATTAATTCTGGAAATATGTTCCAGGTGAGAAATTCCACTGCCATTTTTGGCTCTGGAGTCCAACAAATCTGAGCCTAAATTGCTCGTTTGTCTTCTATCAGAA
i canFam3.chr16            C 0 I 70
e mm10.chr8                 87709882 1828 - 129401213 I
e calJac3.chr3             190577059 401 - 190850796 I

a score=498981.000000
s hg38.chr4_KI270925v1_alt    342792 216 +    555799 ttcatacattgaaacctaattcccaatgcaataacattaagaggt-ggggtctctaggaggtgaccaggtcataagggtggacccttcatgaatgggtttagtacccttataaaaatgtctgagagagc--ttgcttgtttcttctgccatatgaggacatagagaaaactccatctatgatgaatgggccctcagcaggcaccgagtccactgctgcc
s panTro4.chr4             193046155 217 + 193495092 ttcatacattgaaacctaattcccaatgcaataacattaagaggtgggggtctctaggaggtgactaggtcataagggtggacccttcatgaatgggtttagtacccttataaaaaggtctgagagagc--ttgcttctttcttctgccatatgaggacatagagaaaactccatctatgatgaatgggccctcagcaggcaccgagtctactgctgcc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198135653 216 + 198332218 ttcatacattgaaacctaattcccaatgcaataacattaagaggt-ggggtctctaggaggtgactaggtcatgagggtgcagccttcatgaatgggtttagtacccttataaaaaggtctgagagagc--ttacttccttcttctgccatatgaggacatagagaaaactccatctatgatgaatgggccctcaggaggcaccgagtctactgctgcc
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113816123 216 + 115148730 ttcatacattgaaacataattcccaatgaaataacattaagaggt-ggggtctttaggaggtgactaggtcatgaggatggagccttcatgaatgggtttagtgcccttataaaaaggcctgagagagc--ttgcttccttcttctgccatatgaggacatacggaagactccatctatgacgaatgggccctcagcaggcagcaagtctactgctgcc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183719553 218 + 184069350 ttcatacatttaaacctaattcccaatgcaataatatgaagaggt-ggggtcttcaggaggtgactaggtcatgagggtggagccttcatgaatgggtttagtgcccttataaaaaggcccgagagagcttttgcttccttcttctgccatatgaggacacacagaagactccatctatgacgaatgggccctcagcaggcaccgaggctgctgctgcc
i rheMac3.chr5             C 0 I 184
s macFas5.chr5             189112001 218 + 189454096 ttcatacatttaaacctaattcccaatgcaataatatgaagaggt-ggggtcttcaggaggtgactaggtcatgagggtggagccttcatgaatgggtttagtgcccttataaaaaggcccgagagagcttttgcttccttcttctgccatatgaggacacacagaagactccatctatgacaaatgggccctcagcaggcaccgaggctgctgctgcc
i macFas5.chr5             C 0 I 184
s papAnu2.chr5             178530674 218 + 178775436 ttcatacatttaaaCCTAATTCCCAATGTAATAATATGAAGAGGT-GGGGTCTTCaggaggtgactaggtcatgagggtggagccttcatgaatgggtttagtgcccttataaaaaggcCCGAGAGAGCTTTTGCTTCCttcttctgccatatgaggacacacaGAAGACTCCATCTATGACGAATGGGCCCTCAGCAGGCACCGAGTCTGCTGCTGCC
i papAnu2.chr5             C 0 I 184
s chlSab2.chr7             135471355 217 + 135778131 ttcatacatttaaacctaattcccaatgcaataatatgaagaggt-ggggttttcaggaggtaactaggacatgagggtgcagccttcatgaatgggtttagtgcccttataaaaaggcctgagggagcttttgcttccttcttctgccatgtgaggac-cacagaagactccatctatgacaaatgggccctcagcgggcaccgggtctgctgctgcc
i chlSab2.chr7             C 0 I 371
e mm10.chr8                 87709882 1828 - 129401213 I
e canFam3.chr16             18016098  70 -  59632846 I
e calJac3.chr3             190577059 401 - 190850796 I

a score=10773.000000
s hg38.chr4_KI270925v1_alt    343008 21 +    555799 atatgaggacatacagaagac
s panTro4.chr4             193046372 21 + 193495092 atatgaggacatacagaagac
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198135869 21 + 198332218 acatgaggacacacagaagac
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113816339 21 + 115148730 atatgaggacatacagaagat
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87709882 1828 - 129401213 I
e canFam3.chr16             18016098 70 -  59632846 I
e calJac3.chr3             190577059 401 - 190850796 I
e chlSab2.chr7             135471572 371 + 135778131 I
e papAnu2.chr5             178530892 184 + 178775436 I
e macFas5.chr5             189112219 184 + 189454096 I
e rheMac3.chr5             183719771 184 + 184069350 I

a score=8646.000000
s hg38.chr4_KI270925v1_alt    343029 35 +    555799 tccatccatgatgcatgggccctcagcaggcacca
s ponAbe2.chr4             198135890 35 + 198332218 tccatctatgatgaatgggctctcagcaggcacca
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113816360 35 + 115148730 tccatctatgatgaatgggccctcagcaggcactg
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87709882 1828 - 129401213 I
e canFam3.chr16             18016098 70 -  59632846 I
e calJac3.chr3             190577059 401 - 190850796 I
e chlSab2.chr7             135471572 371 + 135778131 I
e papAnu2.chr5             178530892 184 + 178775436 I
e macFas5.chr5             189112219 184 + 189454096 I
e rheMac3.chr5             183719771 184 + 184069350 I
e panTro4.chr4             193046393  0 + 193495092 C

a score=1010.000000
s hg38.chr4_KI270925v1_alt    343064 14 +    555799 attctactgccgcc
s nomLeu3.chr7b            113816395 14 + 115148730 agtctactgctgcc
i nomLeu3.chr7b            C 0 I 186
e mm10.chr8                 87709882 1828 - 129401213 I
e canFam3.chr16             18016098 70 -  59632846 I
e calJac3.chr3             190577059 401 - 190850796 I
e chlSab2.chr7             135471572 371 + 135778131 I
e papAnu2.chr5             178530892 184 + 178775436 I
e macFas5.chr5             189112219 184 + 189454096 I
e rheMac3.chr5             183719771 184 + 184069350 I
e ponAbe2.chr4             198135925  0 + 198332218 C
e panTro4.chr4             193046393  0 + 193495092 C

a score=0.000000
s hg38.chr4_KI270925v1_alt    343078 88 +    555799 atatgaggacatacagaagactccatccatgaattggctctcagcaggcaccgagtctactgctgccatatgaggacatacagaagaa
e mm10.chr8                 87709882 1828 - 129401213 I
e canFam3.chr16             18016098 70 -  59632846 I
e calJac3.chr3             190577059 401 - 190850796 I
e chlSab2.chr7             135471572 371 + 135778131 I
e papAnu2.chr5             178530892 184 + 178775436 I
e macFas5.chr5             189112219 184 + 189454096 I
e rheMac3.chr5             183719771 184 + 184069350 I
e nomLeu3.chr7b            113816409 186 + 115148730 I
e ponAbe2.chr4             198135925  0 + 198332218 C
e panTro4.chr4             193046393  0 + 193495092 C

a score=2813.000000
s hg38.chr4_KI270925v1_alt    343166 35 +    555799 tccatccatgatgcatgggccctcagcaggcaccg
s panTro4.chr4             193046393 35 + 193495092 tccatctatgatgaatgggccctcagcagccaccg
i panTro4.chr4             C 0 C 0
e mm10.chr8                 87709882 1828 - 129401213 I
e canFam3.chr16             18016098 70 -  59632846 I
e calJac3.chr3             190577059 401 - 190850796 I
e chlSab2.chr7             135471572 371 + 135778131 I
e papAnu2.chr5             178530892 184 + 178775436 I
e macFas5.chr5             189112219 184 + 189454096 I
e rheMac3.chr5             183719771 184 + 184069350 I
e nomLeu3.chr7b            113816409 186 + 115148730 I
e ponAbe2.chr4             198135925  0 + 198332218 C

a score=438788.000000
s hg38.chr4_KI270925v1_alt    343201 1745 +    555799  
s panTro4.chr4             193046428 1745 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198135925 1744 + 198332218  
i ponAbe2.chr4             C 0 C 0
e mm10.chr8                 87709882 1828 - 129401213 I
e canFam3.chr16             18016098   70 -  59632846 I
e calJac3.chr3             190577059  401 - 190850796 I
e chlSab2.chr7             135471572  371 + 135778131 I
e papAnu2.chr5             178530892  184 + 178775436 I
e macFas5.chr5             189112219  184 + 189454096 I
e rheMac3.chr5             183719771  184 + 184069350 I
e nomLeu3.chr7b            113816409  186 + 115148730 I

a score=16704.000000
s hg38.chr4_KI270925v1_alt    344946 5 +    555799 aagat
s panTro4.chr4             193048173 5 + 193495092 aagat
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198137669 5 + 198332218 aagat
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113816595 5 + 115148730 aagat
i nomLeu3.chr7b            I 186 C 0
s rheMac3.chr5             183719955 5 + 184069350 aagat
i rheMac3.chr5             I 184 C 0
s macFas5.chr5             189112403 5 + 189454096 aagat
i macFas5.chr5             I 184 C 0
s papAnu2.chr5             178531076 5 + 178775436 aagat
i papAnu2.chr5             I 184 C 0
s calJac3.chr3             190577460 5 - 190850796 aagat
i calJac3.chr3             I 401 C 0
s canFam3.chr16             18016168 5 -  59632846 aagat
i canFam3.chr16            I 70 C 0
e mm10.chr8                 87709882 1828 - 129401213 I
e chlSab2.chr7             135471572 371 + 135778131 I

a score=202720.000000
s hg38.chr4_KI270925v1_alt    344951 64 +    555799 aaaatgaaataaatggatatgaagttctcagcacagtgcctagaaaacaataagatcagcaaat
s panTro4.chr4             193048178 64 + 193495092 aaaatgaaataaatggatatgaagttctcagcacagtgcctagaaaacaataagatcagcaaat
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198137674 64 + 198332218 aaaatgaaataaatggatatgaagttctcagcacagtgcctagaaaacaataagatcagcaaat
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113816600 64 + 115148730 gaaatgaaataaatggatatgaagttctcagcacagtgcctagaaaacaataagatcagcaaat
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183719960 64 + 184069350 gaaaggaaataaatggatatgaagttctcagcacagtgcctagcaaacaatatgatcagcaaat
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189112408 64 + 189454096 gaaaggaaataaatggatatgaagttctcagcacagtgcctagcaaacaatatgatcagcaaat
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178531081 64 + 178775436 gaaaagaaataaatggatatGAAGTtctcagcacagtgcctagcaaaCAATACGATCAgcaaat
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190577465 64 - 190850796 gaaatgaaataaatggatatgaagttctcagcacagtccctagcaaacaataagaccagcaaag
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87711710 64 - 129401213 aagatgaaatgaatgactacaaagtctttagcatgatgcctgtcaaataaagagttcaacgtat
i mm10.chr8                I 1828 C 0
s canFam3.chr16             18016173 64 -  59632846 aaaatgaaataaatgaatataaggtttttcccacaattcctcacaaataatgagataagcaaat
i canFam3.chr16            C 0 C 0
e chlSab2.chr7             135471572 371 + 135778131 I

a score=365671.000000
s hg38.chr4_KI270925v1_alt    345015 127 +    555799 gttagcAACCATAATAATAATTATCATTAGTTGCTGCAGTAGAGAGTTTATGTAGAAAACTAGAAGGATGTAGGCTAGTAAATGGTCAGGTCCTATCAGAAAACCATCCATTATAATGTGTGATATC
s panTro4.chr4             193048242 127 + 193495092 gttagcAACTATAATAATAATTATCATTAGTTGCTGCAGTAGAGAGTTTATGTAGAAAACTAGAAGGACGTAGGCTAGTAAATGGTCAGGTCCTATCAGAAAACCATCCATTATAATGTGTGATATC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198137738 127 + 198332218 gttagcAACTATAATAATAATTATTATTAGTTGCTGCAGTAGAGAGTTTATGTAGAAAACTAGAAGAATGTAGGCTAGTAAATGGTCAGGTCCTATCAGAAAATCATCCATTATAATGTGTGATATG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113816664 127 + 115148730 gttagcAACTATAATAATAATAATTATTAGTTGCTGCAGTAGAGAGTTTATGTAGAAAACTAGAAGGATGTAGGCTAGTAAATGGTCAGGTCCTATCAGAAAACCATCCATTATAATGTGTGATATC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183720024 116 + 184069350 --------gt-taataattattATTATTAGTTGCTGCAGG--AGAGTTTATGTAGAAAACCAGAAGGATGTAGGCTAGTAAATGTTCAGGTCCTATCAGAAAACCATCCATTGTAATGTGTGATATC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189112472 116 + 189454096 --------gt-taataattattATTATTAGTTGCTGCAGT--AGAGTTTATGTAGAAAACCAGAAGGATGTAGGCTAGTAAATGTTCAGGTCCTATCAGAAAACCATCCATTGTAATGTGTGATATC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178531145 116 + 178775436 --------gt-taataataattattattagttgctGCAGT--AGAGTTTATGTAGAAAACCAGAAGGATGTAGGCTAGTAAATGTTCAGGTCCTATCAGAAAACCATCCATTGTAATGTGTGATATC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135471943 125 + 135778131 GTTAGCAAGTATAATAATAATTATTATTAGTTGCTGCAGT--ACAGTTTATGTAGAAAACTAGAAGGATGTAGGCTAGTAAATGTTCAGGTCCTATCAGAAAACCATCCATTGTAATGTGTGATATC
i chlSab2.chr7             I 371 C 0
s calJac3.chr3             190577529 126 - 190850796 gttagcAACTAAAATAATAATGACTATTAGTTGCTGCAGTAGAGAGTTTTTGTAGAAAAATAGAAGGATGTGGGCCAGTAAGTGGCCAGGTCCAGTCAG-AAACCATCCACTATAATGGGTGCTATC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87711774 126 - 129401213 attAACAATCACATTAATAATCAGAAGTGCTAACTACAGGAGTGAATTTATATAGTTAAG-AGAAGAATTTATGCTAGTAAGTGGTAAGGTCCACTTGTGGAACTAGCCATTAATAAGTATAGTATC
i mm10.chr8                C 0 I 743
s canFam3.chr16             18016237  73 -  59632846 -------------------ataagcattaattattactATAACAAGTTTATATAAACAAATAGGAAGATGTGGACTAGTATATAGTTGGGTT-----------------------------------
i canFam3.chr16            C 0 C 0

a score=762905.000000
s hg38.chr4_KI270925v1_alt    345142 249 +    555799 AAATCTACT-GTATCT-CAAGTATAAGT------TCAAAAAATGTTCAGAAGTCAAGCTCTTTCAAGAAAGGTCAATAACACCTATCATTGGCTCATCATCATGGTCCTTCAATCAGCTCTCTCCTCATTAGGAAATTTGCTATCTGTGAGAA---AAGGAGTC-TCCTTAATGGGAAAACGTGCTTTGGATTTCCGCTTGATGGGAGGCACTGAATACTAGTGAATTTTGCTTTGTGGCAATTAAATTGAAAGGTCAAAA
s panTro4.chr4             193048369 258 + 193495092 AAATCTACT-GTATCT-CAAGTATAAGTATAAGTTCAAAAAATGTTCAGAAGTCAAGCTGTTTCAGGAAAGGTCAATAACACCTATCATTGGCTCATCATCATGGTCCTTCAACCAGCTCTCTCCTCATTTGGAAATTTGCTATCTGTGAGAAGAGAAGGAGTC-TCCTTAATGGGAAAACATGCTTTGGATTTCCGCTTGATGGGAAGCACTGAATACTAGTGAATTTTGCTTTGTGGCAATTAAATTGAAAGGTCAAAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198137865 252 + 198332218 AAATCTACT-GTATCT-CAAGTATAAGT------TCAAAAAATGTTCAGAAGTCAAGCTGTTTCAAGAAAGGTCAGTAACACCTATCGTTGGCTGATCATCATGGTCCTTCAACCAGCTCTCTCCTCATTTGGAAATTTGCTATCTGTGAGAAGAGAAGGAGTC-TCCTTAATGGGAAAACATGCTTTGGATTTCCGCTTGAGGGGAGGCACTGAATACTAGTGAATTTTGCTTTGTGGCAATTAAATTGAAAGGTCAAAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113816791 246 + 115148730 AAATCTACT-GTATCT-CAAGT------------TCAAAAGATGCTCAGAAGTCAAGCTGTTTCAAGAAAGGTCAATAACGCCTATCACTGGCTGATCATCATGGTTCTTCAACCAGCTCTCTCCTCATTTGGAAATCTGCTATCTGTGAGAAGAGAAGGAGTC-TCCTTAATGGGAAAACGTGCTTCGGATTTCTGCTTGAGGGGAGGCACTGAATACTAGTGAATTTTGCTTTGTGGCAATTAAATTGAAAGGTCAAAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183720140 251 + 184069350 AAATCTACT-GTATCT-CAAGTATATGT------TCAAAAAACACTCAGAAGTCAAGCTGTTTCAAGAAA-GTCAGTAATGCCTATCATTGGCTGATCATCATGGCCCTTCAACCAGCTCTCTCCTCATTTGGAAATTTGCTATCTGTGAGAAGAGAAGGAGTC-TCCTTAATGGGAAAACATGCTTTGGATTTGCACTTGGGGATAAGCACTGAATACTAGTGAATTTTGCTTTGTGGCAATTAAATCGAAAGGTCAAAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189112588 251 + 189454096 AAATCTACT-GTATCT-CAAGTATATGT------TCAAAAAACGCTCAGAAGTCAAGCTGTTTCAAGAAA-GTCAGTAACGCCTATCATTGGCTGATCATCATGGCCCTTCAACCAGCTCTCTCCTCATTTGGAAATTTGCTATCTGTGAGAAGAGAAGGAGTC-TCCTTAATGGGAAAACATGCTTTGGATTTGCACTTGGGGATAAGCACTGAATACTAGTGAATTTTGCTTTGTGGCAATTAAATCGAAAGGTCAAAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178531261 251 + 178775436 AAATCTACT-GTATCT-CAAGTATATGT------TCAAAAAACGCTCAGAAGTCAAGCTGTTTCAAGAAA-GTCAGTAACGCCTATCATTGGCTGATCATCATGGCCCTTCAACCAGCTCTCTCCTCATTTGGAAATTTGCTATCTGTGAGAAGAGAAGGAGTC-TCCTTAATGGGAAAACATGCTTTGGATTTGCACTTGGGGATAAGCACTGAATACTAGTGAATTTTGCTTTGTGGCAATTAAATTGAAAGgtcaaaa
i papAnu2.chr5             C 0 I 604
s chlSab2.chr7             135472068 251 + 135778131 AAATCTACT-GTATCT-GAAGTAT-TGT------TCAAAAAACGCTCAGAAGTCAAGCTGCTTCAAGAAAGGTCAATAATGCCTATCATTGGCTGATCATCATGACCCTTCAACCAGCTCTCTCCTCATTTGGAAATTTGCTATCTGTGAGAAGAGAAGGAGTC-TCCTTAATGGGAAAATATGCTTTGGATTTGCACTTGGGGATAAGCATTGAATACTAGTGAATTTTGCTTTGAGGCAATTAAATTGAAAGGTCAAAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190577655 254 - 190850796 AAGTCTATC-GTATCTCCAAGTGTATGT------TCAAAAAATGCCCCGAAGTCAGGCTGTTGCAAGAAGAGCTGACAATGGCTCTCATTAGCTGATCATCACCGCCCTTCCACCACCTCTCTCCTCATTTGGAAATCTGCTACCCGTGAGAAGAAGAGGAGTCTTTCATAATGGCAAATCATGCTTTGGATTTGCGCTTTTGGGGAGGCACTGAATACTAATGAATTTTGCTTTGTGCTAATTAAGTTGAAAGGCCAGAA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87712643 189 - 129401213 AAATCTACTAAAATTT-TAAGTAT--TT------TTGACTTAGTCTTAGAAGT-----TGCTCAGTGAAA-ATTAATAACACCTATCATTCATTCATCACCACAGACCC---ACACGTTCTTTCCACA----GAA---------CTGTGA-------------C----------------CATGCTTTATATTGGTGCTTGGG------------ACATTGGTGAATTTTGCTTTGTACTCATTAAATTGAAAGTTAATGA
i mm10.chr8                I 743 C 0
s canFam3.chr16             18016310 178 -  59632846 ------------------------------------AGAAAAATTTCAGAAGTCAAGCTGTTCCAAGAAAAACCAACTGCACCCATCAATAGCTCATAATCTGGGCACTTAAACAGGATTTCTTCTCATTCGGAG----------------------------------------------ATGCTTTGGATTAGTGTTT-AGGAGAGGCACTGGCTCCTAATAAATTTTGCTTTGTAGTCGTTAAAGTGAAAAGCCAACA
i canFam3.chr16            C 0 C 0

a score=941216.000000
s hg38.chr4_KI270925v1_alt    345391 347 +    555799 TATGCTAGTTTGGATTCATTTCTAACGTGGCAGATAACTACCAAAATTGCAACTATCACTAAAGCACTTTGATGTACATATGCAACAAAGGCAGAAAACTGCTCTGAATGTCTCCTAAATCAAATATGTCTCTTGTGTATCTTACAAGTAAAAATATCGTTTTAAGCGTTTCTTTAATGTGGAAAATTTTGCTAAGAAACAAGAGATGCCCACTAGTTTGATTTG-CAGTTACAT-CCACTTTCATCAGCTGT-TATG-GTTACTGATAATTCTTGGCAAGAGTGTTTAACTCATATGATGTAATATTCAGC-TTTTTAGTAAAGTTATTCTTTATATGCCTTATCCCAAAT
s panTro4.chr4             193048627 347 + 193495092 TATACTAGTTTGAATTCATTTCTAAAGTGGCAGATAACTACCAAAATTGCAACTATCACTAAAGCACTTTGATGTACATATGCAACAAAGGCAGAAAACTGCTCTGAATGTCTCCTAAATCAAATATGTCTCTTGTGTATCTTACAAGTAAAAATGTCGTTTTAAGGGTTTCTTTAATGTGGAAAATTTTGCTAAGAAACAAGAGATGCCCACTAGTTTGATTTG-CAGTGACAT-CCACTTTCATCAGCTGT-TATG-GTTACTGATAATTCTTGGCAAGAGCGTTTAACTCATATGATGTAATATTCAGC-TTTTTAGTAAAGTTATTCTTTATATGCCTTATCCCAAAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198138117 348 + 198332218 TATGCTAGTTTGGATTCATTTCTAATGTGGCAGATAACTACCAAAATTGCAACTATCACTAAAGCACTTTGATGTACATATGCAACAAAGGTAGAGAACTGCTCTGAATGTCTCCTAAATCAAATATGTCTCTTGTGTATCTTACAAGTAAAAATGTCGTTTTGAGGGTTTCTTTAATGTGGAAAATTTTGCTAAGAAACAAGAGATGCCCACTGGTTTGATTTG-CAGTTACAT-CCACTTTCATCAGCTGT-TATG-GTTACTGATAATTCTTGGCAAGAGTGTTTAACTCAAATGATGTAATATTCAGCTTTTTTAGTAAAGTTATTCTTTATATGCCTTATCCCAAAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113817037 347 + 115148730 TATGCTAGTTTGGATTCATTTCTAACGTGGCAGATAACTACCAAAATTGCAACTATCACTAAAGCACTTTGATATACATATGCAACAAAGGCAGAGAACTGCTCTGAATGTCTCCTAAATCAAATACGTCTCCTGTGTATCTTACAAGTAAAAATGTCGTTTTGAGGGTTTCTTTAATGTGGAAAATTTTGCTAAGAAACAAGAGATGCCCACTGGTTTGATTCG-CAGTTATAT-CCACTTTCATCGGCTGT-TATG-GTTACTGATAACTCTTGGCAAGTGTGTTTAACTCATATGATGTAATATTCAGC-TTTTTTGTAAAGTTATTCTTTATATGTCTTATCCCAAAT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183720391 346 + 184069350 TATGCTAGTCTGGATTCATTTCTGACTTGGCAGATAACTATCAAAATTGCAACTATTACTAAAGCAC-TTGATGAACATATGCAACAAAGGCAGAGAACTGCTCTGAATGTCTCCTAAATCAAATATGTCTCTTGTGTATCTTACAAGTAAAAATGTTATTTTGAGCATTTCTTTAATGTGGAAAATTTTGTTAAGAAACAAGAGATGCCCACTGGTTTGAGTTG-CAGTTATAT-CCACTTTCATTGGCTAT-TATG-GCTACTGATAATTCTTGGCAAGAGTGTTTAACTCATATGATGTAATATTCAGC-TTTTTAGTAAAGTTATTCTTTATATGTCTTATCCCAACT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189112839 346 + 189454096 TATGCTAGTCTGGATTCATTTCTGACTTGGCAGATAACTATCAAAATTGCAACTATTACTAAAGCAC-TTGATGAACATATGCAACAAAGGCAGAGAACTGCTCTGAATGTCTCCTAAATCAAATATGTCTCTTGTGTATCTTACAAGTAAAAATGTTATTTTGAGCATTTCTTTAATGTGGAAAATTTTGTTAAGAAACAAGAGATGCCCACTGGTTTGAGTTG-CAGTTATAT-CCACTTTCATTGGCTAT-TATG-GCTACTGATAATTCTTGGCAAGAGTGTTTAACTCATATGATGTAATATTCAGC-TTTTTAGTAAAGTTATTCTTTATATGTCTTATCCCAACT
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135472319 347 + 135778131 TATGCTAGTTTGGATTCATTTCTGACTTGGCAGATAACTATCAAAATTGCAACTATTACTAAAGCACTTTGATGAACATATGCAACAAAGGCAGAGAACTGCTCTGAATGTCTCCTAAATCAAATATGTCTCTTGTGTATCTTACAAGTAAAAATGTTATTTTGAGCATTTCTTTAATGTGGAAAAATTTGTTAAGAAACAAGAGATGCCCACTGGTTCGAGTTG-CAGTTATAT-CCACTTTCATTGGCTAT-TATG-GCTACTGATAATTCTTGGCAAGAGTGTTTAACTCATATGATGTAATATTCAGC-TTTTTAGTAAAGTTATTCTTTATATGTCTTACCCCAACT
i chlSab2.chr7             C 0 I 7
s calJac3.chr3             190577909 344 - 190850796 TATGTTAGTTTGGATTCA-TTCTGATTTGGCAGATAACTACCAAAATCGCGAGTGTCAGTAGAGCACTTCGATGAACACAGGCGCTGAAGGCGGAG-GCTGCTCTGAACGCCTCCGAAATC-AATACGTCTCTTGTGCATCTCACAAGTAAAAATGTCATTTTGAGGGTTTCTTGAATGTGGAAAATTGTGCTTAGAAACAAGAGATGCCCACTGGTTTGATCTG-CAGTTATAT-CCATTTTCATCGGCCAT-TATG-GTTACTGATAATTCTTGGCAAGAGTGTTGAACTTGTATGATGTAATATCCAAC-CTTTCAATGAAGTTATTCTTTATATGTCTGATTCCAAAT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87712832 308 - 129401213 ----TAAGTTTGGTTCTATTTATGACACAGCAGGTAATGGCCAAAATCACAAGTATTCTTAAGTAATTTCAGGGAATGT-------GAAGGCCATGGATTGTGCTAAATAACT-TTACATAAAA---GTAACTAGTATATCTCTC---TAAGCATGCCATACTGAGAGTGTCATTAACATGGGAGTGTGT----------AAGAGAGTCCCAGAGGCTT--TTTGTTAATAGCATCCCAAGTTC-----CTGT-TGTATGCTACTCATAATTCTTAACAAATGTGTTTAAATGA-ATCACACAATATTCAAT-CTTACA-TGAACTTA-----TGTACATTCTATATTAGAT
i mm10.chr8                C 0 C 0
s canFam3.chr16             18016488 340 -  59632846 -ATGCTTTCTTGGATCCTTTTCTGATATGGCA-ATAACTATCCAAATCACATGCTCTGTTAAAGCATTTCAAAGAACATATACAACAAAGCTAGTGAACTGCTCTGAATGTCTCCTAAATGAAATA-GTCTCT-GTATCTCCTA-AAATAAAACTGTCATTTTGAAGA---CTTTAGTACAAAAACTTTTCCTGAGGAACAAGAGAAGCCTACTAGCTTGATATG-TAGTTACAT-TTACCTTTGCTGATTGTGCATG-GTTACTGATAATTCTTAGCAAATGTGTTTAACTTGTATGATGTAATATTTAAC-TTTTTCATGGAGTTGTTCTGTGTATGTCTCTTTCTAAAT
i canFam3.chr16            C 0 C 0
e papAnu2.chr5             178531512 604 + 178775436 I

a score=115693.000000
s hg38.chr4_KI270925v1_alt    345738 35 +    555799 -CCCAGCATACACTCTCTTCAGaggc--------c-----atgt---tttgt
s panTro4.chr4             193048974 35 + 193495092 -CCCAGCATACACGCTCTTCAGAGGC--------C-----ATGT---TTTGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198138465 35 + 198332218 -CCCAGCATGCACTTTcttcagaggc--------c-----atgt---tttgt
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113817384 35 + 115148730 -CCCAGCATACACGCTCTTCAGAGGC--------C-----ATGT---TTTGT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183720737 35 + 184069350 -CCCAGCATACACGCTCTTCAGAGGC--------C-----ATGT---TTTGT
i rheMac3.chr5             C 0 I 302
s macFas5.chr5             189113185 35 + 189454096 -CCCAGCATACACGCTCTTCAGAGGC--------C-----ATGT---TTTGT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178532116 35 + 178775436 -CCCAGCATACACGCTCTTCAGAGGC--------C-----ATGT---TTTGT
i papAnu2.chr5             I 604 C 0
s chlSab2.chr7             135472673 35 + 135778131 -CCCAGCACACACGCTCTTCAGAGGC--------C-----ATGT---TTTGT
i chlSab2.chr7             I 7 C 0
s calJac3.chr3             190578253 35 - 190850796 -CCCAGCATCCGTGCTCTTCGGAGGC--------C-----ATGT---TTTCT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87713140 40 - 129401213 -CCCATAATAT---CTCTTGATAGGG--------CCACAAAAGTCCATTTGT
i mm10.chr8                C 0 C 0
s canFam3.chr16             18016828 44 -  59632846 CTTCATAATACAAGTTCCTCAGAGGCAGCACAATC-----ATGT---TTGGG
i canFam3.chr16            C 0 C 0

a score=4500.000000
s hg38.chr4_KI270925v1_alt    345773 1 +    555799 g
s panTro4.chr4             193049009 1 + 193495092 G
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198138500 1 + 198332218 g
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113817419 1 + 115148730 G
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189113220 1 + 189454096 G
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178532151 1 + 178775436 G
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135472708 1 + 135778131 G
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190578288 1 - 190850796 G
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87713180 1 - 129401213 G
i mm10.chr8                C 0 C 0
s canFam3.chr16             18016872 1 -  59632846 G
i canFam3.chr16            C 0 C 0
e rheMac3.chr5             183720772 302 + 184069350 I

a score=743201.000000
s hg38.chr4_KI270925v1_alt    345774 218 +    555799 tttgtctccatgccaaaagtagtcataatggaattcaatgcaca-taga-cgaaagctggtTGAATAAATTGCACCTATAACCAAGAAGAT-------------CAAACATGCTTCCTAGT--------------CTACAGGGTATTTTGCACGT-------------------AATATTGGAAGAGAGACTGTGGAGTATCTGACACATTGATATAACCTCCAGTTGCTAGATGCCTAGT-AACTCCGTGCACGAAAAGAGTGTTT
s panTro4.chr4             193049010 218 + 193495092 TTTGTCTCCATGCCAAAAGTAGTCATAATGGACTTCAATGCACA-TAGA-CGAACGCTGGTTGAATAAATTGCACCTATAACCAAGAAGAT-------------CAAACATGCTTCCTAGT--------------CTACAGGGTATTTTGCAAGT-------------------AATATTAGAAGAGAGACTGTGGAGTATCTGACACATTGATATAACCTCCAGTTGCTAGATGCCTAGT-AACTCCATGCACGAAAAGAGTCTTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198138501 218 + 198332218 tttgtctccatgccaaaagtagtcaTAATGGAATTCAATGCACA-TAGA-CAAACGCTGGTTGAATAAATTGCACCTATAACCAAGATGAT-------------CAAACATGCTTCCTAGT--------------CTATAGGGTATTTTGCACAT-------------------AATATTAGCTGAGAGACTGTGGAGTATCTGACACATCGATATAACCTCCAGTTGCTAGATGCCTAGT-AAACCCATGCACGAAAAGAGTGTTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113817420 218 + 115148730 TTTGTCTCCATGCCAAAAGTAGTCATAATGGAATTCAATGCACG-TAGA-CAAACGCTGGTTGAATAAATTGCACCTATAACCAAGAAGAT-------------CAAACATGCTTCCTAGT--------------CTATAGGGTATTTTGCACAT-------------------AATATTAGATGAGAGACTGTGGAGTATCTGCCACATGGATATAACCTCCAATTGCTAGATGCCTAGT-AAATCTATGCACGAAAAGAGTGTTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183721074 219 + 184069350 TTTGTCTTCATGCCAAAAGTAGTCATAATGGAATTCAATGCACA-TAGA-CAAATGTTGGTTGAATAAATCACACCTATAACCAAGAAGAT-------------CAAACATGCTTCCTAGC--------------CTATAGGGTATTTTGCACGT-------------------AATATTAGATGAGAGACTGTGGAGTATCTGACACATTGATATAACCTCCAGTTGCCAGATGCCTAGTAAAATCCATGCACGAAAAGAGTGTTT
i rheMac3.chr5             I 302 I 300
s macFas5.chr5             189113221 219 + 189454096 TTTGTCTCCATGCCAAAAGTAGTCATAATGGAATTCAATGCACA-TAGA-CAAATGTTGGTTGAATAAATCACACCTATAACCAAGAAGAT-------------CAAACATGCTTCCTAGC--------------CTATAGGGTATTTTGCACGT-------------------AATATTAGATGAGAGACTGTGGAGTATCTGACACATTGATATAACCTCCAGTTGCCAGATGCCTAGTAAAATCCATGCACGAAAAGAGTGTTT
i macFas5.chr5             C 0 I 300
s papAnu2.chr5             178532152 219 + 178775436 TTTGTCTCCATGCCAAAAGTAGTCATAATGGAATTCAATGCACA-TAGA-CAAATGTTGGTTGAATAAATCACACCTATAACCAAGAAGAT-------------CAAACATGCTTCCTAGC--------------CTATAGGGTATTTTGCATGT-------------------AATATTAGATGAGAGACTGTGGAGTATCTGACACATTGATATAACCTCCAGTTGCCAGATGCCGAGTAAAATCCATGCACGAAAAGAGTGTTt
i papAnu2.chr5             C 0 I 300
s chlSab2.chr7             135472709 219 + 135778131 TTTGCCTCCATGCCAAAAGTAGTCATAATGGAATTCAATGCACA-CAGA-CAAATGTTGGTTGAATAAATCACACCTATAACCAAGAAGAT-------------CAAACATGCTTCCTAGC--------------CTATAGGGTATTTTGCACGT-------------------AATATTAGATGAGAGACTGTGGAGTATCTGACACATTGATACAACCTCCAGTTGCCAGATGCCTAGTAAAATCCATGCACGAAAAGAGTGTTT
i chlSab2.chr7             C 0 I 317
s calJac3.chr3             190578289 224 - 190850796 TTTGTCTACCTGCCAAAAGTAATCATAATGGAATCCAACGCACA-GACAGCAAACATTGGTTGAATAAATCACAACT---ACCAAAAAGGT-------------CAAACATGCTTCCTAGA--------------CAATAGGGCATTTTGCACATAGAGTATCTAAGAATTCACAATATTAGATGAGAGACTGTGGAATATCAGACACGCTGAAATAACCTCCAGTTGCT------------AATACAATGCACATAAAGAGTGTCT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87713181 247 - 129401213 TTTCTTTACAT-CCTAAAGTAGCCATAATAGAAATCAGTACACACTCGA-CTACTAATAGC----TAAATTGCATGTTTATTGAAAAGAAT-------------CAAACACCCCTCCTACCCATTAATATTGTCTCTACAGGGCATTTTGCACAGCAACTGTCTAATAATGAACAACATTAGTTAAGAGACCTTGGAGTATCCAACACATCAAAATTACCACTAGTACCTGGAGACTTAGG-AAGTCCATGAAACAAGAGAGTCCTT
i mm10.chr8                C 0 C 0
s canFam3.chr16             18016873 247 -  59632846 TTATTCTTCATGACAAAAGTAGTCATAGTAAAGTTCAGTGCACA-CACAATAAATA----TTGAATAAATTGGACTTTTAGCCAAAAGCATGAACTACCCTTCCCAAACATATTACCATGT--------------ATATAGGATATTTTGTATCCAGGGAATTTAAGAATTAATAAAACTAGATGAAAGACCTTGGAGTATCAGACATAGTGAaataagctccagttactagagttttaga-aagtctgtgcaccacgagagtgttt
i canFam3.chr16            C 0 C 0

a score=3710227.000000
s hg38.chr4_KI270925v1_alt    345992 951 +    555799  
s panTro4.chr4             193049228 952 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198138719 937 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113817638 951 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183721593 955 + 184069350  
i rheMac3.chr5             I 300 C 0
s macFas5.chr5             189113740 955 + 189454096  
i macFas5.chr5             I 300 C 0
s papAnu2.chr5             178532671 945 + 178775436  
i papAnu2.chr5             I 300 C 0
s chlSab2.chr7             135473245 955 + 135778131  
i chlSab2.chr7             I 317 C 0
s calJac3.chr3             190578513 949 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87713428 945 - 129401213  
i mm10.chr8                C 0 I 22
s canFam3.chr16             18017120 954 -  59632846  
i canFam3.chr16            C 0 C 0

a score=168528.000000
s hg38.chr4_KI270925v1_alt    346943 52 +    555799 CTCTACTTAAATGTTGCTTTtgtgtgtatgtgtctgtgtttgtctgtCATTT
s panTro4.chr4             193050180 52 + 193495092 CTCTACTTAAATATTGCTTTTGTGTGTATGTGTCTGTGTTTGTCTGTCATTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198139656 52 + 198332218 CTCTACTTAAATGTTTCTTTTGTGTGTATGTGTCTGTGTTTGTCTGTCATTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113818589 52 + 115148730 CTCTACTTAAAtgtttcttttgtgtgtatgtgtctgtgtttgtctgtCATTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183722548 52 + 184069350 CTCTACTTAAATGTTTCTTTTGTGTGTATGTGTCTGTGTTTGTCTGTCATTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189114695 52 + 189454096 CTCTACTTAAAtgtttcttttgtgtgtatgtgtctgtgtttgtctgtCATTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178533616 52 + 178775436 CTCtacttaaatgtttcttttgtgtgtatgtgtctgtgtttgtctGTCATTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135474200 52 + 135778131 CTCTACTTAAAtgtttcttttgtgtgtatgtgtctgtgtttgtctgtCATTT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190579462 46 - 190850796 CTCCACTTACATGTTTCTTTTGTGTGTATGTGTC------TGTCTGTCATTT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18018074 39 -  59632846 TTCTATTTAAATGTGCCTT---TGTGTGTGTGTCCATCTTTT----------
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87714373 22 - 129401213 I

a score=751410.000000
s hg38.chr4_KI270925v1_alt    346995 197 +    555799 AAA-GGTATGACCAGATGCTACC-TTGCAGCCTTTTCCTGGT-----AAACTCTTGGTCATTTTCAACATTTTCCTGACAT--------TCCAGCTGAATAGTTATCATCACTTCAAT-TTTTAATACAATAATTTAAAGCATTCTATGATTCCAGTT-TTCAAAAGGTACAACACACATAAGTACTTCCCTTAAGATGCTGATAACTAGTGAA
s panTro4.chr4             193050232 197 + 193495092 AAA-GGTATGACCGGGTGCTACC-TTGCAGCCTTTTCCTGGT-----AAACTCTTGGTCATTTTCAACATTTTCCTGACAT--------TCCAGCTGAATAGTTATCATTACTTCAAT-TTTTAATACAATAATTTAGAGCAATCTATGATTCCAGTT-TTCAAAAGGTACAACACACATAAGTACTTCCCTTAAGATGCTGATAACTAGTGAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198139708 197 + 198332218 AAA-GGTATGATCAGGTGCTACC-TTGCAGCCTTTTCCTGGT-----AAACTCTTGGTCATTTTCAACATTTTCCTGACAT--------TCCAGCTGAATAGTTATCATTACTTCAAT-TTTTAATACAATAACTTAGAGCATTCTATGATTCCAGTT-TTCAAAAGGTACAACACACATAAGTACTTCCCTTAAGATACTGATAACTAGTGAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113818641 198 + 115148730 AAAGGGTATGACCAGGTGCTACC-TTGCAGCCTTTTCCTGGT-----AAACTCTTGGTCATTTTCAACATTTTCCTGACAT--------TCCAGCTGAATGGTGACCATTACTTCAAT-TTTTAATATAATAATTTAGAGCATTCTATGATTCCAGTT-TTCAAAAGATACAATGCATGTAAGTACTTCCCTTAGGATACTGATAACTAGTGAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183722600 197 + 184069350 GAA-GGTATGACCAGGTGCTACC-TTGCAGCTTTTTCCTGGT-----AAACTCTTGGTCATTTTCAACATTTTCCTGACAT--------TCCAGCTGAATGGTGATCATTACTTCAAT-TTTTAATATAATAATTtagagcattctgtgattccagtt-ttcaaaaggTACAACACACATAAGTACTTCCCTGAAGATACTGATAACTAGTGAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189114747 197 + 189454096 GAA-GGTATGACCAGGTGCTACC-TTGCAGCTTTTTCCTGGT-----AAACTCTTGGTCATTTTCAACATTTTCCTGACAT--------TCCAGCTGAATGGTGATCATTACTTCAAT-TTTTAATATAATAATTtagagcattctgtgattccagtt-ttcaaaaggTACAACACACATAAGTACTTCCCTGAAGATACTGATAACTAGTGAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178533668 197 + 178775436 GAA-GGTATGACCAGGTGCTACC-TTGCAGCTTTTTCCTGGT-----AAACTCTTGGtcattttcaacattttcctGACAT--------TCCAGCTGAATGGTGATCATTActtcaat-ttttaatataataatttagaGCATTCTGTGATTCCAGTT-TTCAAAAGGTACAACACACATAAGTACTTCCCTGAAGATACTGATAACTAGTGAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135474252 197 + 135778131 GAA-GGTATGACCAGGTGCTACC-TTGCAGCCTTTTCCTGGT-----AAACTCTTGGTCACTTTCAACATTTTCCTGACAT--------TCCAGCTGAATGGTGATCATTACTTCAAT-TTTTAATATAATAATTtagagtattctgtgattccagtt-ttcaaaaggTACAACACACATAAGTACTTCCCTGAAGATACTGATAACTAGTGAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190579508 198 - 190850796 AAA-AGTATGACCGGGTGCCACCTTTGCAGCCGTTTCCTGGT-----AAACTCTTGGTCATTTTCAACATTTTCCTGACAT--------TCCAGCTGAATGGTAATCATTAATCCAAT-TTTTACTATAATAATTtagagcattctatgattccagtt-ttcaaaaggtacaatatatGTAAGTACTTCCCTTGAGATACTGATATGTACTGAA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87714395 208 - 129401213 AGG-GGTATGACCAGGTGCTACC-CTGCAGCCTTTTCCCAGTAATAGAAACTCATGTTCATTTTCAGCTTTTTCCTAACATCAACATTCCCTAGCTGAATGGTGCTCAAAATATTGA----TTAAGATAAAATTTTAAATAATTCTGCATTGCTAGTTGTTTAGAAGGCACCGTGCATGTGGATATTTATCTTAAGATGTAGATAAGGAGGGAA
i mm10.chr8                I 22 I 342
s canFam3.chr16             18018113 202 -  59632846 AAA-AGTATAACTAGATAGTACC-CTGAAGACCTTTCCTGGTAATGTAAGCTCTTGTTTATTTCCAGCTTTTTCCTGACATTGGCA---TTCCATTGAATGCTGATTATTAA---AATGTTTTAATGAAATAATTTAGAGCATCCTATAATTCCATTT-TTTAAA---TGCAGTACATATGAATATTTCCCTTAAGATGCTGGTAAGTAGTGAA
i canFam3.chr16            C 0 C 0

a score=66485.000000
s hg38.chr4_KI270925v1_alt    347192 20 +    555799 AACACTATAGTGATAATTCT
s panTro4.chr4             193050429 20 + 193495092 AACACTATACTGATAATTCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198139905 20 + 198332218 AACACTATACTGATAATTCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113818839 20 + 115148730 AACACTATACTGACAATTCT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183722797 20 + 184069350 AAGACTATACTGATAATTCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189114944 20 + 189454096 AAGACTATACTGATAATTCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178533865 20 + 178775436 AAGACTATACTGATAATTCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135474449 20 + 135778131 AAGACTATACTGATAATTCT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190579706 20 - 190850796 AACACTACACTGATAATTCT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18018315 20 -  59632846 AACTCTACACTGGCATTTTT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87714603 342 - 129401213 I

a score=538590.000000
s hg38.chr4_KI270925v1_alt    347212 187 +    555799 CTACTAAACAGCAAAATAAAGGCTAAAATGTTA-TTGATGCTTTCGCATTCTGTAGAGAAAGTGATTTTTCATAGCGTTATTGACTGCATTTCATCTGTTTTGCATATTGTTAATGAACCTTGTT---CTCTTT--------aaaacaaaacaaaacaaaacaaaacaTCTTTC-TTTAAAAAAAAGAACTCACTTATTT
s panTro4.chr4             193050449 177 + 193495092 CTACTAAACAGTAAAATAAAGGCTAAAATGTTA-TTGATGCTTTCTCATTCTGTATAGGAAGTGATTTTTCATAGCGTTATTGACTGCATTCCATCTGTTTTGCATATTGTTAATGAACCTTGTT---CTCTTT--------AAAACAAAACAAAACA----------CCTTTC-TTTAAAAAAAAGAACTCACTTATTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198139925 177 + 198332218 CTACTAAACGGTAAAATAAAAGCTAAAATGTTA-TTGATGCTTTCTCATTCTGTATAGAAAGTGATTTTTCATAGCATTATTGACTGCATTTCATCTGTTTTGCATATTGTTAATGAACCTTGTT---CTCTTT--------AAAACAAAACAAAACA----------CCTTTC-TTTAAAAAAAAGAACTCACTTATTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113818859 174 + 115148730 CTACTAAACAGTAAAACAAAAGCTAAAATGTTA-TTGATGCTTTCTCATTCTGTACAGAAAGTGATTTTTCATAGCGTTATTGACTGCATTTCATCTGTTTTGCATATTGTTAATGAACCCTGTT---CTCTTT-----------ACAAAACAAAACA----------CCTTTC-TTTAAAAAAAAGAACTCACTTATTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183722817 184 + 184069350 CTACTAAACAGTAAAACAAAAGCTAAAATGTAA-TCGATGCTTTCTCATTCTGTATAGAAAGTGGTTTTTCATAGCGTTATTGACTGCATTTCATCTGTTTTGC----TGATAATGAACTTTGTT-TGCTTTTTAAAAAAAACAAAAAACAAAAAACA----------CCTTTCTTTTAAAAAGAAGAACTCACTTATTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189114964 184 + 189454096 CTACTAAACAGTAAAACAAAAGCTAAAATGTAA-TCGATGCTTTCTCATTCTGTATAGAAAGTGGTTTTTCATAGCGTTATTGACTGCATTTCATCTGTTTTGC----TGATAATGAACTTTGTT-TGCTTTTTaaaaaaaacaaaaaacaaaaaaaa----------CCTTTCTTTTAAAAAAAAGAACTCACTTATTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178533885 182 + 178775436 CTActaaacagtaaaacaaaagctaaaatgtAA-TCGATGCTTTCTCATTCTGTATAGAAAGTGGTTTTTCATAGCGTTATTGACTGCATTTCATCTGTTTTGC----TGATAATGAaccttgtt-tgcttttt--aaaaaataaaaaaaaaaaaaca----------cctttcttttaaaaaaaagaactcactTATTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135474469 176 + 135778131 CTAGTAAACAGTAAAACAAAAGCTAAAATGTTA-TTGATGCTTTCTCATTCTGTATAGAAAGTGGTTTTTCATAGCATTATTGACTGCATTTCATCTGTTTTGC----TGATAATGAACCTTGTT-TGCTTTTT--------TAAAAAAAAAAAAACA----------ACCTTTCTTTTAAAAAAAGAATTCACTTATTT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190579726 170 - 190850796 CCACTAAAAAGTAAAGCAAAAGCTAAAACGTTA-TTGATGCTTTCTTATTCTGTATAGAAAATGATTTTTCATAGTGTTATCAACTGCATTTCATCTGTTTTGCATATTGTTAATGAACCCTGTT---CTCTTT--------------AAAAAAAAAA----------TCTTTC-TTTAAAAAAAA-ACCTCACTTATTT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87714945 165 - 129401213 ctgCT-----TTAGAGCAAAATCGAAACCATTT-TAGATGCTTTGGAAAGCTGTACAG---GTGATTTTTCATGGGGAAATTGACCAAATTTTATCTAGTTTACACATTGTAAAAGGACCTTGTTTTTTTCTTT----------------AAAAAGAG----------CTATTCTTTTAAAAGAAAAATGTTAATTATTT
i mm10.chr8                I 342 I 31
s canFam3.chr16             18018335 166 -  59632846 CTATTAAACTGTAAAGCTAAAGTTAGAATATCACTTGATGCTTTCTCCCACAGTGTGAAAGGTGACTTTCCATAGGGAAATTGACTACATTTTATCTATTCTACATATTGTTAAAGGACCCCATT-CCTTCTTT------------------AAACAA----------TTGTTC-TTTAAGAAAAACATACAATTC----
i canFam3.chr16            C 0 C 0

a score=242390.000000
s hg38.chr4_KI270925v1_alt    347399 73 +    555799 CCTTGACACCAACATACAC--TATG------ACTTCCAAATTATGCCACCTCTGGGGAACAGTTTTTCATATCCTCTCAAG
s panTro4.chr4             193050626 73 + 193495092 CCTTGACACCAACATACAC--TATG------ACTTCCAAATTATGCCACCTCTGGGGAACAGTTTTTCATATCCTCTCAAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198140102 73 + 198332218 CCTTGACACCAACATACAC--TATG------ACTTCCAAATTATGCCATCTCAGGGGAACAGTTTTTCATATCCTCTCAAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113819033 73 + 115148730 TCTTGACATCAGCATACAC--TATG------ACTTCCAAATAATGCCACCTCTGGGGAACAGTTTTTCATATCCTCTCAAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183723001 75 + 184069350 CCTTGACATCAACATACTCTATATA------ACTTCCAAATAATGCCACCTCTGGGGAACAGTTTTTGATATCCTCTCAAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189115148 75 + 189454096 CCTTGACATCAACATACTCTATATA------ACTTCCAAATAATGCCACCTCTGGGGAACAGTTTTTGATATCCTCTCAAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178534067 75 + 178775436 CCTTGACATCAACATACTCTATATA------ACTTCCAAATAATGCCACCTCTGGGGAACAGTTTTTGATATCCTctcaag
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135474645 75 + 135778131 CCTTGACATCAACATACTCTATATA------ACTTCCAAATAATGCCACCTCTGGGGAACAGTTTTTGATATCCTCTCAAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190579896 75 - 190850796 TCTTGACATCAACATATACTATGTA------ACTTCCAAATAATGCCACCTCTGGGGAACAGTCTTTGATATCCTCTCAAG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18018501 81 -  59632846 CCTTGAAGTCAATACACACAGTGTAATTGATACCTCCAAATAATACCTCTTCTGGAGAATCTTTCTTGATATACTCCCAAA
i canFam3.chr16            C 0 I 19
e mm10.chr8                 87715110 31 - 129401213 I

a score=26863.000000
s hg38.chr4_KI270925v1_alt    347472 10 +    555799 TACttttttt
s panTro4.chr4             193050699 10 + 193495092 TACTTAtttt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198140175 10 + 198332218 TACttttttt
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113819106 10 + 115148730 TACttttttt
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183723076 10 + 184069350 TACttttttt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189115223 10 + 189454096 TACttttttt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178534142 10 + 178775436 cacttttttt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135474720 10 + 135778131 TACttttttt
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190579971 10 - 190850796 TAATTCTTTC
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87715110 31 - 129401213 I
e canFam3.chr16             18018582 19 -  59632846 I

a score=663751.000000
s hg38.chr4_KI270925v1_alt    347482 306 +    555799 ttttttttttttttgagatggagtctctctctgttgcccaggctggagtacagtggtgcaatgtcggctcactgcaacctctgcctcccaggttcaagtgattctcctgcctcagcctcctgagtagctgggattataggcgcccgccaccatgctcggctaa--tttttttgtatttttagtagagacagggtttcaccatgttggtcagactggtctcgaactcctgacctgctgatccacctgcctcggcctcccaaagggctgcgattacaggcatgagccactgtgcccggccAGTAAT---TTTA-
s panTro4.chr4             193050709 305 + 193495092 tttttttttt----gagatggagtctctctctgttgcccaggctggagtacagtggtgcaatgttggctcactgcaacctctgcctccaaggttcaagtgattctcctgcctcagcctcttgagtagctgggattataggtgcccgccaccatgcttggctaa--tttttttgtatttttagtagagacagggtttcaccatgttggtcagactggtctcgaactcctgacctgatgatccacctgcctcggcctcccaaagggctgcgattacaggcatgagccactgcgcccggccAGTAATAATTTTT-
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198140185 303 + 198332218 tttttttt------gatatggagtctctctctgtcacccaggctggagtacagtggcacaatgtcggctcactgcaacctctgcctcctgggttcaagtgattctcctgcctcagcctcctgggtagctgggattataggcggccgccaccatgctcggctaa--tttttttgtatttttagtagagacagggtttcaccatgttggtcagactggtcttgaactcctgacctgatggtccacctgcctcagcctcacaaagggctgggattacaggcgtgagccactgcgcccagccAGTAATTTTTTTT-
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113819116 302 + 115148730 ttttttt-------gagatggagtctcgctctgtcgcccaggctggagtacagtggctcaatgtcggctcactgcaacttctgcctcccgggttcaagtgattctcctgcctcagcctcctgagtagctgggattacagccacccgccaccatgcccggctaa--tttttttgtatttttagtagagacggggtttcaccatgttggtcagactggtctcgaactcctgacctgatgatccacctgcctcggcctcccaaagggctgggattacaggcgggagccactgcgccccgccAGTAATTTTTTTT-
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183723086 305 + 184069350 tttctttt------gagatggagtctcactctgtcgcccaggctggagtgcagtggtgcaatctcggctcactgcaacctctgcctcctgggttcaagtgattctcctgcctcagcctcctgagtagctgggattacagacatgtgtcaccatacccggctaa-ttttttttgtatttttagtagagatggggtttcaccgtattagccaggatggtctccatctcctgacctagtgatccacctgcctcagcctcccaaagggctgggattacaggcgtgagacaccgcgcccagccAGTAATTTTTTTTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189115233 305 + 189454096 tttctttt------gagatggagtctcactctgtcgcccaggctggagtgcagtggtgcaatctcggctcactgcaacctctgcctcctgggttcaagtgattctcctgcctcagcctcctgagtagctgggattacagacatgtgtcaccatacccggctaa-ttttttttgtatttttagtagagatggggtttcaccgtattcgccaggatggtctccatctcctgacctagtgatccacctgcctcagcctcccaaagggctgggattacaggcgtgagacaccgcgcccagccAGTATTTTTTTTTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178534152 305 + 178775436 tttctttt------gagatgcagtctcactctgtcgcccaggctggagtgcagtggtgcaatctcggctcactgcaacctctgcctcctgggttcaagtgattctcctgcctcagcctcctgagtagctgggattacaggcatgtgtcaccatacccggctaa-ttttttttgtatttttagtagagatggggtttcaccgtattagccaggatggtctccatctcctgacctagtgatccacctgcctcagcctcccaaagggctgggattacaggcgtgagacaccgcgcccagccagtaattttttttc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135474730 303 + 135778131 tttctttt------gagacagagtctcactctgttgcccaggctggcgtgcagtggtgcaatctcggctcactgcaacctccgcctcctgggttcaagtgattctcctgcctcagcctcctgagtagctgggattgcaggcgtgtgtcaccacacccggctaatttttttttgtatttttagtagagatggggtttcaccgtgttagccaggacagtcttgatctcctgacctagtgatccacctgcctcggcctcccaaagggctgggattacaggcgtgagacaccgcgcccggccAGTAATTTTTT---
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87715110  31 - 129401213 I
e canFam3.chr16             18018582  19 -  59632846 I
e calJac3.chr3             190579981   0 - 190850796 C

a score=32221.000000
s hg38.chr4_KI270925v1_alt    347788 11 +    555799 CTCTGTGTGTT
s panTro4.chr4             193051014 11 + 193495092 CTCTGTGTGTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198140488 11 + 198332218 CTCTGTGTGTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113819418 11 + 115148730 CTCTGTGTATT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183723391 11 + 184069350 CTCTGTGTGTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189115538 11 + 189454096 CTCTGTGTGTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178534457 11 + 178775436 ctctgtgtgtt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135475033 11 + 135778131 CTCTGTGTGTT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190579981 11 - 190850796 CTCTGGGCATC
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87715110 31 - 129401213 I
e canFam3.chr16             18018582 19 -  59632846 I

a score=247882.000000
s hg38.chr4_KI270925v1_alt    347799 75 +    555799 ACTTGGCATTTTCCACTTTTCTGTTCTCTTTTGTGCATTTGTATTCTATTTTATATTAGTCCATGGTTGTGGCAC
s panTro4.chr4             193051025 75 + 193495092 ACTTGACATTCTCCACTTTTCTGTTCTCTTTTGTGCATTTGTATTCTATTTTATATTAGTCCATGGTTGTGGCAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198140499 75 + 198332218 ACTTGACATTTTCCAATATTCTGTTCTCTTTTGTGCATTTGTATTCTATTTTATATTAGTCCATGGTTGTGGCAC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113819429 75 + 115148730 ACTTGCTATTTTCCACTTTTGTGTTCTCTTTTGTGCATTTGTATTGTATTTTATATTAGTCCATGGTTGTGGCAC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183723402 75 + 184069350 ACTTGCTATTTTCCACTTTTGTGTTCTCTTTTGTACATTTGTATTCTACTTTATATCAGTCCATGGTTGTGGCAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189115549 75 + 189454096 ACTTGCTATTTTCCACTTTTGTGTTCTCTTTTGTACATTTGTATTCTACTTTATATCAGTCCATGGTTGTGGCAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178534468 75 + 178775436 ACTTGCTATTTTCCACTTTTGTGTTCTCTTTTGTACATTTGTATTCTACTTTATATCAGTCCATGGTTGTGGCAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135475044 75 + 135778131 ACTTGCTATTTTCTACTTTTGTGCTCTCTTTTGTACATCTGTATTCTACTTTATATCAGTCCATGGTTGTGGCAC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190579992 75 - 190850796 ACTTGCTGTTTTCCAACTTTGTGTCATCTTTTGTACATTTGTATTTCATTTTATATCAGTCCATGCTTGTGGCAC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18018601 71 -  59632846 ACTTACCATTTTCCACATGTATATTCTTT----TGCATTTGTTTTCTCTTTTATATGAGTCCATGGTAATGGTAT
i canFam3.chr16            I 19 I 3
e mm10.chr8                 87715110 31 - 129401213 I

a score=743160.000000
s hg38.chr4_KI270925v1_alt    347874 208 +    555799 ATATTAAAGATG-TTTGTAAATTCTTGTCAAGTAAAATGAATAAACGATCTG-ATGCCAGTTGTTCTTAAAATTATGTTCCCTCTCAATCTCAGAGGGACTTAATACTCTTCACA-CTTTTTACCGACTGAATGCAGGAAAATCCCAGGTCATCCATGAAGCCTGTGATTCTGTTGGTTCCATCGTCCAACGTGTCCCAGCTATCATTCAA
s panTro4.chr4             193051100 208 + 193495092 ATATTAAAGATG-TTTGTAAATTCTTGTCAAGTAAAATGAATAAACGATCTG-ATGCCAGTTGTTCTTAAAATTACGTTCCCTCTCAATCTCAGAGGGACTTAATACTCTTCACA-CTTTTTACCGACTGAATGCAGGAAAATCCCAGGTCATCCATGAAGCCTGTGATTTTGTTGGTTCCACCGTCCAAAGTGTCCCAGCTATCATTCAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198140574 206 + 198332218 ATATTAAAGATG-TTTGTAAATTCTTGTCAAGTAAAATGAATAAACGATCTG-AT-CCAGTTGTTCTTAAAATTATGTTCCCTCTCAATCTCAGAGGGACTTAATACTCTTCACA-C-TTTTACCGACTGAATGCAGGAAAATCCCAGGTCATCCATGAAGCCTGTGATTCTGTAGGTTCCACCGTCCAACGTGTCCCAGCTATCATTCAA
i ponAbe2.chr4             C 0 I 426
s nomLeu3.chr7b            113819504 208 + 115148730 ATATTAAAGATG-TTTGTAAATTCTTGTCAAGTAAAACGAATAAACGGTCTG-ATGCCAGTTGTTCTTAAAATTACGTTCCCTCTCAATCTCAGAGGGACTTAATACTCTTCACA-CTTTTTACCGACTGAATGCAGGAAAATCCCAGGTCATCCATGAAGTCTGTGATTCTGCTGGTTCCACCATCCAACTTGTCCCAGTTATCATTCAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183723477 208 + 184069350 ATATTAAAGATG-TTTGTAAATTCTTGTCAAGTAAAATGAATAAATGGTCTG-ATGCCAGTTGTTCTTAAAATTGCATTCCCTCTCAATCTCAGAGGGTCTTAATATTCTTCACA-CTTTTTACCAACTGAATGCAGGAAAATCCCAGGTCATCCACGAAGCCTGTGATTTTGCTGTTTCCACCATCCAATGTGTCCCAGCTGTCATTCAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189115624 208 + 189454096 ATATTAAAGATG-TTTGTAAATTCTTGTCAAGTAAAATGAATAAATGGTCTG-ATGCCAGTTGTTCTTAAAATTGCGTTCCCTCTCAATCTCAGAGGGTCTTAATATTCTTCACA-CTTTTTACCAACTGAATGCAGGAAAATCCCAGGTCATCCACGAAGCCTGTGATTTTGCTGTTTCCACCGTCCAATGTGTCCCAGCTGTCATTCAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178534543 208 + 178775436 ATATTAAAGATG-TTTGTAAATTCTTGtcaagtaaaatgaataaatggtcTG-ATGCCAGTTGTTCTTAAAATTGCGTTCCCTCTCAATCTCAGAGGGTCTTAATATTCTTCACA-CTTTTTACCGACTGAATGCGGGAAAATCCCAGGTCATCCACGAAGCCTGTGATTTTGCTGTTTCCACCGTCCAATGTGTCCCAGCTGTCATTCAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135475119 208 + 135778131 ATATTAAAGATG-TTTGTAAATTCTTGTCAAGTAAAATGAATAAATGGTCTG-ATGCCAGTTGTTCTTAAAATTACATTCCCTCTCAGTCTCAGAGGGTCTTAATATTCTTCACA-CTTTTTACCGACTGAATGCAGGAAAATCCCAGGTCATCCACGAAGCCTGTGATTTTGCTGTTTCCACCGTCCAATGTGTCCCAGCTGTCATTCAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190580067 208 - 190850796 ATATTGAAGATG-TTTGTAAATTCTTGTCAAGCAAGATAAATAAACGGTATG-ATGCCAGCTGTTCTCAAAATTATGTTCCCTCTCAATCTGAGAGGGACTAGCTAC-CTTCACATCTTTCTACCAACTGAAGGCAGGAAAATCCCAGGTCATCCATGAAGCCGGGGATTCTGCTGGTTCCACCTTTCAATATGTCCCAGCTATCATTCAA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87715141 197 - 129401213 ATGttaaa-ata-tttataaattattGTCCACTAAA---AATAGATGGTCCATAAGATTTTTTTCTTCAAAATTGTACTCACACTTAATTTGAGTATCACTTCATGCTCTCCTTA---------CAATGCAGTACACAGAAACTCCAGGGCATCCATGACGCAGGTGGTTCTTGTATTCTTAGCTTCATAGTTTTTCAAGCTATAACTTAA
i mm10.chr8                I 31 C 0
s canFam3.chr16             18018675 208 -  59632846 ATATGAAAGATGCTTTATAAATTCTTGTTAAGTGAAATGAGTAAGTGGTCTG-ATGCCAATTTTTCTCAAAATTACTTTCATTCTCAATATGAGGGACACTTAGTACTCTATGC--TTTCCTGATGATTAAACATAGGGAAATCCTTGGTCATCCACAAAGCATATGATTCTGATCATTTTGCCTTCTAATTTTTCCCAGGTACCATTTGA
i canFam3.chr16            I 3 C 0

a score=153050.000000
s hg38.chr4_KI270925v1_alt    348082 60 +    555799 GAGTGGACATAATGCTCTGCTCCCAGACCACGTCAAAGTGTCCACTCTGGGTGCCCCACG
s panTro4.chr4             193051308 60 + 193495092 GAGTGGACATAATGCTCTGCTCCCAGACCACGTCAAAGTGTCCACTCTGGGTACCCCATG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198141206 60 + 198332218 GAGTGGACATAATGCTCTGCTCCCAGACCACGTGGAAGTGTCCACTCTGGGTGCCCCATG
i ponAbe2.chr4             I 426 C 0
s nomLeu3.chr7b            113819712 60 + 115148730 GAGTGGACATAATGCTCTGCTCCCAGACCTCGTCGAAGTGTCCACTCTGGGTGCCCCACG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183723685 59 + 184069350 GAGTGGACATAATGCTCTGCTCCCAGACCCCATCGAAGTGTCCACTCTGGGCA-CCCATG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189115832 59 + 189454096 GAGTGGACATAATGCTCTGCTCCCAGACCCCATCGAAGTGTCCACTCTGGGCA-CCCATG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178534751 59 + 178775436 GAGTGGACATAATGCTCTGCTCCCAGACCCCATCGAAGTGTCCACTCTGGGCA-CCCATG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135475327 59 + 135778131 GAGTGGACATAATGCTCTGCTCCCAGACCCCATCGAAGTGTCCACTCTGGGCA-CCCATG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190580275 60 - 190850796 GAGTGGACATAATGCTCTGCTCCCAGGCCCCATCTAAGTGTCCACTCTGGGTGCCCCACT
i calJac3.chr3             C 0 I 672
s mm10.chr8                 87715338 35 - 129401213 AAATGGATATACTG-TTTGCCACTAATTCAAAT------------TCT------------
i mm10.chr8                C 0 C 0
s canFam3.chr16             18018883 27 -  59632846 ----GCATAAAATG-TCTATTAACA----------------CCTCTAT------------
i canFam3.chr16            C 0 C 0

a score=85467.000000
s hg38.chr4_KI270925v1_alt    348142 101 +    555799 ACAACCTACTGGCCAGCACTGACT-ACCAGACCCTGTTGAAGTGTCCACTCTGGGTGCTCCACGACAACTTACTAGCCAACACTGACTACAGGGCTCTAAAC
s panTro4.chr4             193051368 101 + 193495092 ACAACCTACTGGCCAGCACTGACT-ACCAGACCCTGTTGAAGTGTCCACTCTGGGTGCTCCACGGCAACTTACTGGCCAACACTGACTACAGGGCTCTAAAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198141266 101 + 198332218 ACAACCTACTGGCAAGCACTGACT-ACCAGACCCCATCGAAGTGTCCACTCTGGGTGCTCCACGACAACCTACTGGCCAGCACTGACTACAGGGCTCTAAAC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113819772 101 + 115148730 ACAACCTACTGGCCAGCACTGACT-ACCAGACCCCGTCGAAGTGTCCACTCTGGGTGCCCCATGACAACCTACTGGCCAGCACTGACTACAGGGCTCTAAAC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183723744  33 + 184069350 AC---------------------------------------------------------------------ACTAGCCAGCACTGACTACAGGGCTCTAAAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189115891  33 + 189454096 AC---------------------------------------------------------------------ACTAGCCAGCACTGACTACAGGGCTCTAAAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178534810  33 + 178775436 AC---------------------------------------------------------------------ACTAGCCAGCACTGACTACAGGGCTCTAAAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135475386  33 + 135778131 AC---------------------------------------------------------------------ACTAGCCAGCACTGACTACAGGGCTCTAAAC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190581007  94 - 190850796 ACAAGCTGCTAACCGGCCCTGACTAACCACAAGCTGCTAACCGGCCC--------TGAGTAACCACAAGCTGCTAACCGGCCCTGATTATAGGGCTGTAAAC
i calJac3.chr3             I 672 C 0
s mm10.chr8                 87715373  67 - 129401213 -------------------------------TCCAGTCTAAATATTCATTC----TACTTTGTTGCTACCTTTGAACTAACCCTGAATGGAGAGTTCTAAAC
i mm10.chr8                C 0 C 0
s canFam3.chr16             18018910  74 -  59632846 ------------------------ACCCAGGTTTCACCTAAGCACTCATTC----TGACCCACTCCAACTTACTAACCAGCACTGACCACAACGTTCTAAGC
i canFam3.chr16            C 0 I 25

a score=13356.000000
s hg38.chr4_KI270925v1_alt    348243 4 +    555799 TAAA
s panTro4.chr4             193051469 4 + 193495092 TAAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198141367 4 + 198332218 TAAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113819873 4 + 115148730 TAAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183723777 4 + 184069350 TAAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189115924 4 + 189454096 TAAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178534843 4 + 178775436 TAAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135475419 4 + 135778131 TAAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190581101 4 - 190850796 TGAA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87715440 4 - 129401213 AAAA
i mm10.chr8                C 0 I 20
e canFam3.chr16             18018984 25 -  59632846 I

a score=106961.000000
s hg38.chr4_KI270925v1_alt    348247 45 +    555799 GGAGAGAACTGTTGGGTGGTTATGCTTGCAATTAGACCCTCCAGG
s panTro4.chr4             193051473 45 + 193495092 GGAGAGAACTGTTGGGTGGTTATGCTTGCAATTAGACCCTCCAGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198141371 33 + 198332218 AGAGAGAACTGTTGGGTGGTTATG------------CCCTCCAGG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113819877 45 + 115148730 GGAGAGAACTGTTGGGTGCTTATTTTTGCAATTAGACCATCCAGG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183723781 45 + 184069350 GGAGAGAACTGTTGGGTGGTTAAGCCTGCAATTAGACCCTCCAGG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189115928 45 + 189454096 GGAGAGAACTGTTGGGTGGTTAAGCCTGCAATTAGACCCTCCAGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178534847 45 + 178775436 GGAGAGAACTGTTGGGTGGTTAAGCCTGCAATTAGACCTTCCAGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135475423 45 + 135778131 GGATAGAACTGTTGGGTGGTTAAGCCTGCAATTAGACCCTCCAGG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190581105 44 - 190850796 GGAAAGAACTGCTGGATGGTGAAGCTCGCACTAAGACATTGCA-G
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87715444 20 - 129401213 I
e canFam3.chr16             18018984 25 -  59632846 I

a score=11037.000000
s hg38.chr4_KI270925v1_alt    348292 4 +    555799 GTGT
s panTro4.chr4             193051518 4 + 193495092 GTGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198141404 4 + 198332218 GTGT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113819922 4 + 115148730 GTAT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183723826 4 + 184069350 GTGT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189115973 4 + 189454096 GTGT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178534892 4 + 178775436 GTGT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135475468 4 + 135778131 GTGT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190581149 4 - 190850796 ACAT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18019009 4 -  59632846 GTAC
i canFam3.chr16            I 25 C 0
e mm10.chr8                 87715444 20 - 129401213 I

a score=495698.000000
s hg38.chr4_KI270925v1_alt    348296 165 +    555799 CTACTACCACTGATGGAAGCAGGGGAAAATAAATATTATACATTCAGAG-TTTGGCTACTCCAAAAGAGTAGGAGTCCCCCAAACACTGGGGACTCCTACTGAAGCATCATATATGAGACATATG-AAGAGTAGAAAATGTAGGAAACATTGACAAACATGTATTAA
s panTro4.chr4             193051522 165 + 193495092 CTACTACCACTGATGGAAGCAGGGGAAAAGAAATATTATACATTCAGAG-TTTGACTACTCCAAAAGAGTAGGAGTCCCCCAAACACTGGGGACTCCTACTGAAGCATCATATATGAGACATATG-AAGAGTAGAAAATGTAGGAAACATTGACAAACATGTATTAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198141408 165 + 198332218 CTACTACCACTGATGGAAGCAGGGGAAAAGAAATATTATACATTCAGAG-TTTGGCTACTCCAAAAGAGTAGGAGTCCCCCAAACACTGGGGACTCCTACTGAAGCATCATATATGAGACATATG-AAGAGTAGAAAATGTAGGAAACATTGACAAACATGTATTAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113819926 165 + 115148730 CTACTAACACTGATGGAAGCAGGGGAAAATAAACGTTATACATTCAGAG-TTTGGCTACTCCAAAAGAGTAGGAGTCCTCCAGACACTGGGGACTCCTACTGAAGCATCATATATGAGACATATG-AAGAGTAGAAAATGTAGGAAACATTGACAAACTTGTATTAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183723830 152 + 184069350 CTACTACCACTGATGCAAGCAGGGGAAAATACATGGTAGACACTCAGAG-TTTGGCTACTCT-------------TTTGCCAAACACTGGGGACTCCTATTGAAGCATCATATATGAGACATATG-AAGAGTAGACAATGTAGGAAACATTGACAAACATGTATGAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189115977 152 + 189454096 CTACTACCACTGATGCAAGCAGGGGAAAATACATGGTAGACACTCAGAG-TTTGGCTACTCT-------------TTTGCCAAACACTGGGGACTCCTATTGAAGCATCATATATGAGACATATG-AAGAGTAGAAAATGTAGGAAACATTGACAAACATGTATGAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178534896 152 + 178775436 CTACTACCACTGATGCAAGCAGGGGAAAATACATGGTAGACACTCAGAG-TTTGGCTACTCT-------------TTTGCCAAACGCTGGGGACTCCTATTGAAGCATCATATATGAGACATATG-AAGAGTAGAAAATGTAGGAAACATTGACAAACATGTATGAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135475472 152 + 135778131 GTACTACCACTGATGCAAGCAGGGGAAAATACATGGTAGACACTCAGAG-TTTGGCTACTCT-------------TTTGCCAAACACTGGGGGCTCCTATTGAAGCATCATATATGAGACATATG-AAGAGTAGAAAATGTAGGAAACATTGACAAACATGTATGAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190581153 149 - 190850796 CTCCTGTCACTGATGGAAGCAGGGGAAAG-AAACGGAATACATTCAGAG-CTCGGCTACCCC---------------TGCGGAACAGTGGGGACTCTGACTGAAACATCGTATATGGGACATATG-AAGAGTATAAAATGTAGCGAACATTGACAAACATGTATTAA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87715464 149 - 129401213 CAACTAACACAGAT--AACGTAAGGAAAAGAAATCCAATCTATATAGAG-CATGTCTCATCT-------------TTCATCAAAAACTGTAGTCTCCTCATTAAACATCACATATAAAACACATATAAATGCAGAAAATTTAGTGA--ATTCAAAAATATGCATTAA
i mm10.chr8                I 20 I 44
s canFam3.chr16             18019013 150 -  59632846 CCACTA-TAATGATAAAAGCAGAGAAAAGGAAAGGTTACACATTTGGAGAGATAGGTAGTCT-------------TTTGCCAAACATTGACATCTCCTACTGATACATCATATGTAAAATATGTT-AAGAATA-AAAATGTAGTAAGCATTGGC-AATACATATTAA
i canFam3.chr16            C 0 C 0

a score=220772.000000
s hg38.chr4_KI270925v1_alt    348461 79 +    555799 GTCACTTCAATATAAGCCTTGGAAAAGTCTAGGAGCTCTATTAGAGATGCATGAATAGAATACAATCAGggga-----------catggt
s panTro4.chr4             193051687 79 + 193495092 GTCACTTCAATATAAGCCTTGGAAAAGTCTAGGAGCTCTATTAGAGATGCATGAAGAGAATACAATCAGggga-----------catggt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198141573 79 + 198332218 GTCACTTTAATATGAGCCTTGGAAAAGTCTAGGAGCTCTATTAGAGATGCATGAATAGAATACAATCAGggga-----------catggt
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113820091 74 + 115148730 GTCACTT-----TAAGCCTCGGAAAAGTCCAGGAGCTCTATTGGAGATGTGTGAATAGAGTACAATCACggga-----------catggt
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183723982 90 + 184069350 GTCACTTTAATATAAGCTTCAGAAAAGTCTAGGAGCTGTATTAGAGATGCGTGAGTAGAGTACAATGAGGGGACACCTCAGAGTCATGGT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189116129 90 + 189454096 GTCACTTTAATATAAGCTTCAGAAAAGTCTAGGAGCTGTATTAGAGATGCGTGAGTAGAGTACAATGAGGGGACACCTCAGAGTCATGGT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178535048 90 + 178775436 GTCACTTTAATATAAGCTTCAGAAAAGTCTAGGAGCTGTATTAGAGATGCGTGAGTCGAGTACAATGAGGGGACACCTCAGGGCCATGGT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135475624 90 + 135778131 GTCACTTAAATATAAGCTTCAGAAAAGTCTAGGAGCTGTATTAGAGATGTGTGAGTAGAGTACAATGAGGGGACACCTCAGAGCCATGGT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190581302 83 - 190850796 GTCACTTTAATACAAGCCTCAGAGAAGTCTAGGAGCTTGATTCGAGATGTGTGAATC-AGTACAAGGAAGGGACATCC------AGTGCC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18019163 74 -  59632846 ACTATTCC----CAAGCCTTAGAAAAGTCTAGGAGCTCCATTAGAGATGTG-GACTAGAGTACTATTAGGTGA-----------CATGCC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87715613 44 - 129401213 I

a score=268556.000000
s hg38.chr4_KI270925v1_alt    348540 72 +    555799 atgaccagagttgaataaacagcattgctcactactcttcctgaaaataatactaaaaacagcaagaatata-
s panTro4.chr4             193051766 72 + 193495092 atgaccagagttgaataaacagcatttctcactactcttcctgaaaataatactaaaaacagcaagaatata-
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198141652 72 + 198332218 atgaccagagttgaataaacagcattgctcactactcttcctgaaaataatactaaaaacagcaagaatata-
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113820165 72 + 115148730 atgaccagagttgaataaccagcattgctcactactcttcttgaaaataatactaaaaacagcaagaatata-
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183724072 72 + 184069350 GTGACCAGAGTTGAATAAACAGCATTGCTCACTGCTCTTCCTGAAAATAATATTAAAAACAGCAAGAATATA-
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189116219 72 + 189454096 GTGACCAGAGTTGAATAAACAGCATTGCTCACTGCTCTTCCTGAAAATAATATTAAAAACAGCAAGAATATA-
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178535138 72 + 178775436 GTGACCAGAGTTGAATAAACAGCATTGCTCACTGCTCTtcctgaaaataatattaaaaacagcaagaatcta-
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135475714 72 + 135778131 GTGATCAGAGTTGAATAAACAGCATTGCTCAATGCTCTTCCTGAAAATAATATTAAAAACAGCAAGAATATA-
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190581385 72 - 190850796 ATGACCAGAGTTGAATGAACAGCATTGCTTACTCCTCCTCCCCAAAATAATAATAAAAACAGCAAGAATATA-
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87715657 72 - 129401213 ATAACTATAGTGGCATAAATATTATCCTTTAATACTCTTCCTAAGGAGAATTCTAAAACAAAACAAAAcata-
i mm10.chr8                I 44 I 9203
s canFam3.chr16             18019237 70 -  59632846 --AACCATAGT-gcataaacagcatctctcaccactgttcctagaaatgacactaaaagcagcaaaaatattt
i canFam3.chr16            C 0 C 0

a score=877998.000000
s hg38.chr4_KI270925v1_alt    348612 302 +    555799 ttttaaaatac-aatttcattttaagttgaactaggagtaaatagaaatggaccatagact-caaaagta-catatagagactctaaacagctgaaatcaagcaagccat-ggaagaccaaaggaagaaaagcacagtgatggcttaaaggcacagtggtggctgatttcagaaagggctg-------------------aaggccaggg----actctgaaatataaaagttgtattctttgtttgtaataatggattcagaa-cctctatggaccg-aggtcatc-gaagactttctggacccagtttcact------cagagaaggtgatgctct
s panTro4.chr4             193051838 302 + 193495092 ttttaaaatac-aatttcattttaagtcgaactaggagtaaatagaaatggatcatagact-caaaagta-catatagagactctaaacagctgaaatcaagcaagccat-ggaagaccaaaggaagaaaagcacagtgatggcttaaaggcacagtggtggctgatttcagaaagggctg-------------------aaggccaggg----actctgaaatataaaagttgtattctttgtttgtaataatggattcagaa-cctctatggaccg-aggtcatc-gaagcctttctggactgagtttcact------cagagaaggtgatgctct
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198141724 302 + 198332218 ttttaaaatac-aatttcattttaagccaaactaggagtaaatagaaatagaccatagact-caacagta-catatagagactctaaacagctgaaatcaagcaagccat-ggaagaccaaaggaggaaaagcacagtgatggcttaaaggcacagtggtggctgacttcagaaagggctg-------------------aaggccaggg----actctgaaatataaaagttgtattctttgtttgtaataatggattcagaa-actctatggacca-aggtcatc-gaagcctttctggacccagtttcact------caaagaaggtgatgctct
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113820237 301 + 115148730 ttttaaaatac-aatttcattttaagccagactaggagtaaatagaaatggaccatagaag-caaaagta-catatagagactccaaacagctgaaatcaagcaaatcat-gcaagacaaaaggaagaaaagcacagtgatggcttaaaggcacagtggtggctgatttcagaaagggctg-------------------aaggccaggg----actctgaagtataaaagttgtattctttgtttgtaataatggattcagaa-tttctatggacag-aggtcacc-aaagcctttctgagcctaggttcact------cagagaa-gtgatgctct
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183724144 303 + 184069350 TTTTAAAAGAT-AATTCCATTTGAAGCCAAACTAGGACTAATTAGAAATGGACCATAGACT-CAAAAGTA-CATACAGAGACTCCAAACAGCCGAAATCAAGCAAGTCAC-GCAAGACAAAAGGAAGAAAAGCACAGTGGTGGCTTAAAGGCACAGTGGTGGCTGATTTCAGAAAGGGCGG-------------------AAGGCCAGGG----ACTCTGAAATATAAAAGTTGTATTCTTAGTTCGTAATTATGGATTCAGAAGCCTCTATGGACCG-AGGTCATC-AAAGCCCTTTTTGGCCCAGTTTCACT------CAGAGAAGGCGATGCTCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189116291 303 + 189454096 TTTTAAAAGAT-AATTCCATTTGAAGCCAAACTAGGACTAATTAGAAATGGACCATAGACT-CAAAAGTA-CATACAGAGACTCCAAACAGCCGAAATCAAGCAAGTCAC-ACAAGACAAAAGGAAGAAAAGCACAGTGGTGGCTTAAAGGCACAGTGGTGGCTGATTTCAGAAAGGGCGG-------------------AAGGCCTGGG----ACTCTGAAATATAAAAGTTGTATTCTTAGTTCGTAATTATGGATTCAGAAGCCTCTATGGACCG-AGGTCATC-GAAGCCCTTTTTGGCCCAGTTTCACT------CAGAGAAGGCGATGCTCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178535210 303 + 178775436 ttttaaaagat-aattccaTTTGAAGCCAAACTAGGACTAATTAGAAATGGACCATAGACT-CAAAAGTA-CATACAGAGACTCCAAACAGCCGAAATCAAGCAAGTCAC-AcaagacaaaatgaagaaaagcacaGTGGTGGCTTAAAGGCACAGTGGTGGCTGATTTCAGAAAGGGTGG-------------------AAGGCCAGGG----ACTCTGAAATTTAAAAGTTGTATTCTTAGTTCGTAATAATGGATTCAGAAGCCTCTATGGACCG-AGGTCATC-GAAGCCCTTTTTGGCCCAGTTTCACT------CAGAGAAGGCGATGCTCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135475786 303 + 135778131 CTTTAAAAGAC-AATTCCATTTGAAGCCAAACTAGGAGTAAATAGAAATGGACCATAGACT-CAGAAGTA-CATACAGAGACTCCAAACAGCTGAAATCAAGCAAGTCAC-GCAAGACAAAAGGAAGAAAAGCACAGTGGTGGCTTAGAGGCACAGTGGTGGCTGATTTCAGAAAGGGCTG-------------------AAGGCCAGGG----ACTCTGAAATACAAAAGTTGTATTCTTAGTTCGTAATAATGGATTCAGAAGCCTCTATGGACCG-AGGTCATC-GAAGCCCTTTTTGGCCCAGTTTCACT------CAGAGAAGGCGATGCTCT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190581457 287 - 190850796 TTTTAAGATAC-AATTCCATTGAAAGCAAAAGTAGGAGTGAATAGACATGGACCACAGACT-CAAAAGTCTCACACAGAGACTCCAAACAGCGGAAATCAAGCAAGTCATAGAAAGACAAAAGGAAGACAGGAGCAGTG-------AGGGGCAC-GTGGCAGCTGCATTCAGACAGTGCTG-------------------CACGCCAGGG----ATGCGGAAACATAGAAGCTGCGTTC----TTTGTAATAATGGATTCAGAAGCCTCTATGAACAG-AGGTCACC-GAAGTCTTTCTGGGCCCAGTTCCACT------CA------GTGATACTCT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18019307 303 -  59632846 ttttaaaatacaaataccattttcagcaaaattagggaaaaatacaca--aactctagactccaaaaata-tctgtagaaactcaaaatagctgagatcaagaaagtcat-g----------------------------tagct---aggcgcaatggtagctgatttcagatagtgttggcaaaaatcacacatcctaaaggccagagagtcactctgaaatacaaaaattatacactttgtttgcaacaatggctttaggaactgagataaacaatatgtcaccagaagccctcttggatccaatctatctaggctataaaaaaagtggcactat
i canFam3.chr16            C 0 I 19
e mm10.chr8                 87715729 9203 - 129401213 I

a score=3276.000000
s hg38.chr4_KI270925v1_alt    348914 1 +    555799 a
s panTro4.chr4             193052140 1 + 193495092 a
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198142026 1 + 198332218 a
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113820538 1 + 115148730 a
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183724447 1 + 184069350 A
i rheMac3.chr5             C 0 I 25
s macFas5.chr5             189116594 1 + 189454096 A
i macFas5.chr5             C 0 I 7
s papAnu2.chr5             178535513 1 + 178775436 A
i papAnu2.chr5             C 0 I 7
s chlSab2.chr7             135476089 1 + 135778131 A
i chlSab2.chr7             C 0 I 25
s calJac3.chr3             190581744 1 - 190850796 A
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I

a score=12251.000000
s hg38.chr4_KI270925v1_alt    348915 15 +    555799 caaagagccgatgac--
s panTro4.chr4             193052141 15 + 193495092 caaagagccgatgac--
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198142027 15 + 198332218 caaagagccaaccac--
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113820539 15 + 115148730 cagaaagcgaaccac--
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189116602 13 + 189454096 CAAAGAGCC--CCAC--
i macFas5.chr5             I 7 I 3
s papAnu2.chr5             178535521 13 + 178775436 CAAAGAGCC--CCAC--
i papAnu2.chr5             I 7 I 2
s calJac3.chr3             190581745 15 - 190850796 CAAAGAGCC--CCACAC
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e chlSab2.chr7             135476090 25 + 135778131 I
e rheMac3.chr5             183724448 25 + 184069350 I

a score=-872.000000
s hg38.chr4_KI270925v1_alt    348930 2 +    555799 tt-
s panTro4.chr4             193052156 2 + 193495092 tt-
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198142042 2 + 198332218 tt-
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189116618 2 + 189454096 TC-
i macFas5.chr5             I 3 C 0
s calJac3.chr3             190581760 2 - 190850796 -TG
i calJac3.chr3             C 0 T 4
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e chlSab2.chr7             135476090 25 + 135778131 I
e papAnu2.chr5             178535534 2 + 178775436 I
e rheMac3.chr5             183724448 25 + 184069350 I
e nomLeu3.chr7b            113820554 0 + 115148730 C

a score=24016.000000
s hg38.chr4_KI270925v1_alt    348932 52 +    555799 aggtgtatctgcagaagccactgaattctatggcagtgaaggagaagactgt
s panTro4.chr4             193052158 52 + 193495092 aggtgtatctgcagaagccactgaattctatggcagtgaaggagaagaCTGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198142044 52 + 198332218 agctgtatccgcagaagccaccgaattctatggcagtgaaggagaagactgt
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189116620 52 + 189454096 AGCCGTATTTGCAGAAGCCATCTAATTCTGTGGTGGGAAAGGAGAAGACTGT
i macFas5.chr5             C 0 T 55
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e calJac3.chr3             190581762  4 - 190850796 T
e chlSab2.chr7             135476090 25 + 135778131 I
e papAnu2.chr5             178535534  2 + 178775436 I
e rheMac3.chr5             183724448 25 + 184069350 I
e nomLeu3.chr7b            113820554  0 + 115148730 C

a score=17270.000000
s hg38.chr4_KI270925v1_alt    348984 64 +    555799 tgggttgttaaGCTCTTAGCCGTATCTGCAGAAGCCACCAAATCCTATGATGGTGAAGGAGAAG
s panTro4.chr4             193052210 64 + 193495092 TGGGTTGTTAAGCTCTTAGCCGTGTCTGCAGAAGCCACTGAATCCTATGATGGTGAAGGAGAAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198142096 64 + 198332218 tgggttgttaagctcttagctgTATCTGCAGAAGCCACCAAATCCTATGATGGTGAAGGAGAAG
i ponAbe2.chr4             C 0 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e calJac3.chr3             190581762  4 - 190850796 T
e chlSab2.chr7             135476090 25 + 135778131 I
e papAnu2.chr5             178535534  2 + 178775436 I
e macFas5.chr5             189116672 55 + 189454096 T
e rheMac3.chr5             183724448 25 + 184069350 I
e nomLeu3.chr7b            113820554  0 + 115148730 C

a score=546.000000
s hg38.chr4_KI270925v1_alt    349048 1 +    555799 A
s panTro4.chr4             193052274 1 + 193495092 A
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198142160 1 + 198332218 A
i ponAbe2.chr4             C 0 C 0
s calJac3.chr3             190581758 1 - 190850796 A
i calJac3.chr3             T 4 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e chlSab2.chr7             135476090 25 + 135778131 I
e papAnu2.chr5             178535534 2 + 178775436 I
e macFas5.chr5             189116672 55 + 189454096 T
e rheMac3.chr5             183724448 25 + 184069350 I
e nomLeu3.chr7b            113820554 0 + 115148730 C

a score=56009.000000
s hg38.chr4_KI270925v1_alt    349049 48 +    555799 CTTAGCCATATCTGCAGAAGCCACCTAATTCTATGGTGGTGAAGGAGA
s panTro4.chr4             193052275 48 + 193495092 CTTAGCCATATCTGCAGAAGCCACCTAATTCTATGGTGGTGAAGGAGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198142161 48 + 198332218 CTTAGCCGTATCTGCAGAAGCCACCTAATTCTATGGTGGTGAAGGAGA
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189116617 48 + 189454096 CTCAGCCGTATTTGCAGAAGCCATCTAATTCTGTGGTGGGAAAGGAGA
i macFas5.chr5             T 55 C 0
s papAnu2.chr5             178535536 48 + 178775436 CTCAGCCGTATTTGCAGAAGCCATCTAATTCTGTGGTGGGAAAGGAGA
i papAnu2.chr5             I 2 C 0
s calJac3.chr3             190581759 48 - 190850796 CTGAGCCGTATTTGCAGAAACCACCTAATTCTACGGTGCTTAAGAAGA
i calJac3.chr3             C 0 T 49
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e chlSab2.chr7             135476090 25 + 135778131 I
e rheMac3.chr5             183724448 25 + 184069350 I
e nomLeu3.chr7b            113820554  0 + 115148730 C

a score=3935.000000
s hg38.chr4_KI270925v1_alt    349097 5 +    555799 AGATT
s panTro4.chr4             193052323 5 + 193495092 AGATT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198142209 5 + 198332218 AGACT
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189116665 5 + 189454096 AGACT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178535584 5 + 178775436 AGACT
i papAnu2.chr5             C 0 T 52
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e calJac3.chr3             190581807 49 - 190850796 T
e chlSab2.chr7             135476090 25 + 135778131 I
e rheMac3.chr5             183724448 25 + 184069350 I
e nomLeu3.chr7b            113820554 0 + 115148730 C

a score=3644.000000
s hg38.chr4_KI270925v1_alt    349102 50 +    555799 TAGCCGTATCTGCAGAAGCCTCCAAATTCTACGGTGGTGAAGGAGAAGA------------------T
s panTro4.chr4             193052328 68 + 193495092 TAGCCATATCTGCAGAAGCCATTTAATCCTATGGTGGTGAAGGAGAAGACTGTTGGGTTGTTAAGCTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198142214 50 + 198332218 TAGCCGTATCTGCAGAATCCATCTAATCCTATGATGGTGAAGGAGAAGA------------------C
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189116670  4 + 189454096 -----GTAT-----------------------------------------------------------
i macFas5.chr5             C 0 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e calJac3.chr3             190581807 49 - 190850796 T
e chlSab2.chr7             135476090 25 + 135778131 I
e papAnu2.chr5             178535589 52 + 178775436 T
e rheMac3.chr5             183724448 25 + 184069350 I
e nomLeu3.chr7b            113820554  0 + 115148730 C

a score=27787.000000
s hg38.chr4_KI270925v1_alt    349152 49 +    555799 TTAGCCATATCTGCAGAAGCCTCCTAATTCTATGGTGGTGAAGGAGAAG
s panTro4.chr4             193052396 49 + 193495092 TTAGCCATATCTGCAGAAGCCACCTAATTCTATGGTGGTGAAGGAGAAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198142264 49 + 198332218 TTAGCCATATCTGCAGAAGCCACCAAATCCTATGATGGTGAAGGAGAAG
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189116674 26 + 189454096 -----------------------CTAATTCTGCGGTGGGAAAGGAGAAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178535537 49 + 178775436 TCAGCCGTATTTGCAGAAGCCATCTAATTCTGTGGTGGGAAAGGAGAAG
i papAnu2.chr5             T 52 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e calJac3.chr3             190581807 49 - 190850796 T
e chlSab2.chr7             135476090 25 + 135778131 I
e rheMac3.chr5             183724448 25 + 184069350 I
e nomLeu3.chr7b            113820554  0 + 115148730 C

a score=1365.000000
s hg38.chr4_KI270925v1_alt    349201 1 +    555799 A
s panTro4.chr4             193052445 1 + 193495092 A
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198142313 1 + 198332218 A
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189116700 1 + 189454096 A
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178535586 1 + 178775436 A
i papAnu2.chr5             C 0 T 51
s calJac3.chr3             190581758 1 - 190850796 A
i calJac3.chr3             T 49 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e chlSab2.chr7             135476090 25 + 135778131 I
e rheMac3.chr5             183724448 25 + 184069350 I
e nomLeu3.chr7b            113820554 0 + 115148730 C

a score=40503.000000
s hg38.chr4_KI270925v1_alt    349202 48 +    555799 CTTAGCCATATCTGCAGAAGCCACCTAATTCTATGGTGGTGAAGGAGA
s panTro4.chr4             193052446 48 + 193495092 CTTAGCCGTATCTGCAGAATCCATCTAATCCTATGGTGGTGAAGGAGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198142314 48 + 198332218 CTTAGCCGTATCTGCAGAATCCATCTAATCCTATGATGGTGAAGGAGA
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189116701 30 + 189454096 -----CTGT-------------ATCTAATTCTGCGGTGGGAAAGGAGA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178535536 48 + 178775436 CTCAGCCGTATTTGCAGAAGCCATCTAATTCTGTGGTGGGAAAGGAGA
i papAnu2.chr5             T 51 C 0
s calJac3.chr3             190581759 48 - 190850796 CTGAGCCGTATTTGCAGAAACCACCTAATTCTACGGTGCTTAAGAAGA
i calJac3.chr3             C 0 T 49
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e chlSab2.chr7             135476090 25 + 135778131 I
e rheMac3.chr5             183724448 25 + 184069350 I
e nomLeu3.chr7b            113820554  0 + 115148730 C

a score=1910.000000
s hg38.chr4_KI270925v1_alt    349250 2 +    555799 AG
s panTro4.chr4             193052494 2 + 193495092 AG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198142362 2 + 198332218 AG
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189116731 2 + 189454096 AG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178535584 2 + 178775436 AG
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e calJac3.chr3             190581807 49 - 190850796 T
e chlSab2.chr7             135476090 25 + 135778131 I
e rheMac3.chr5             183724448 25 + 184069350 I
e nomLeu3.chr7b            113820554 0 + 115148730 C

a score=975.000000
s hg38.chr4_KI270925v1_alt    349252 3 +    555799 ACT
s panTro4.chr4             193052496 3 + 193495092 ACT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198142364 3 + 198332218 ACT
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189116733 1 + 189454096 A--
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178535586 3 + 178775436 ACT
i papAnu2.chr5             C 0 T 51
s calJac3.chr3             190581758 3 - 190850796 ACT
i calJac3.chr3             T 49 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e chlSab2.chr7             135476090 25 + 135778131 I
e rheMac3.chr5             183724448 25 + 184069350 I
e nomLeu3.chr7b            113820554 0 + 115148730 C

a score=15871.000000
s hg38.chr4_KI270925v1_alt    349255 21 +    555799 TAGCCATATCTGCAGAAGCCA
s panTro4.chr4             193052499 21 + 193495092 TAGCCATATCTGCAGAAGCCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198142367 21 + 198332218 TAGCCATATCTGCACAAGCCA
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178535538 21 + 178775436 CAGCCGTATTTGCAGAAGCCA
i papAnu2.chr5             T 51 C 0
s calJac3.chr3             190581761 21 - 190850796 GAGCCGTATTTGCAGAAACCA
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e chlSab2.chr7             135476090 25 + 135778131 I
e macFas5.chr5             189116734  0 + 189454096 C
e rheMac3.chr5             183724448 25 + 184069350 I
e nomLeu3.chr7b            113820554  0 + 115148730 C

a score=4677.000000
s hg38.chr4_KI270925v1_alt    349276 11 +    555799 CCTAATTCTAT
s ponAbe2.chr4             198142388 11 + 198332218 CCTAATCCTAT
i ponAbe2.chr4             C 0 I 277
s papAnu2.chr5             178535559 11 + 178775436 TCTAATTCTGT
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190581782 11 - 190850796 CCTAATTCTAC
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e chlSab2.chr7             135476090 25 + 135778131 I
e macFas5.chr5             189116734  0 + 189454096 C
e rheMac3.chr5             183724448 25 + 184069350 I
e nomLeu3.chr7b            113820554  0 + 115148730 C
e panTro4.chr4             193052520  0 + 193495092 C

a score=1240.000000
s hg38.chr4_KI270925v1_alt    349287 11 +    555799 GGTGGTGAAAG
s papAnu2.chr5             178535570 11 + 178775436 GGTGGGAAAGG
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190581793 11 - 190850796 GGTGCTTAAGA
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e chlSab2.chr7             135476090 25 + 135778131 I
e macFas5.chr5             189116734  0 + 189454096 C
e rheMac3.chr5             183724448 25 + 184069350 I
e nomLeu3.chr7b            113820554  0 + 115148730 C
e ponAbe2.chr4             198142399 277 + 198332218 I
e panTro4.chr4             193052520  0 + 193495092 C

a score=1692.000000
s hg38.chr4_KI270925v1_alt    349298 3 +    555799 AGA
s ponAbe2.chr4             198142676 3 + 198332218 AGA
i ponAbe2.chr4             I 277 C 0
s papAnu2.chr5             178535581 3 + 178775436 AGA
i papAnu2.chr5             C 0 T 48
s calJac3.chr3             190581804 3 - 190850796 AGA
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e chlSab2.chr7             135476090 25 + 135778131 I
e macFas5.chr5             189116734 0 + 189454096 C
e rheMac3.chr5             183724448 25 + 184069350 I
e nomLeu3.chr7b            113820554 0 + 115148730 C
e panTro4.chr4             193052520 0 + 193495092 C

a score=1146.000000
s hg38.chr4_KI270925v1_alt    349301 2 +    555799 CT
s ponAbe2.chr4             198142679 2 + 198332218 CT
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178535536 2 + 178775436 CT
i papAnu2.chr5             T 48 C 0
s calJac3.chr3             190581807 2 - 190850796 CT
i calJac3.chr3             C 0 T 51
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e chlSab2.chr7             135476090 25 + 135778131 I
e macFas5.chr5             189116734 0 + 189454096 C
e rheMac3.chr5             183724448 25 + 184069350 I
e nomLeu3.chr7b            113820554 0 + 115148730 C
e panTro4.chr4             193052520 0 + 193495092 C

a score=7270.000000
s hg38.chr4_KI270925v1_alt    349303 32 +    555799 TAGCTGTATCTGCAGAAGCCATCTAATTCTAC
s ponAbe2.chr4             198142681 32 + 198332218 TAGCCGTATCTGCAGAAGCCACATAATTCTAT
i ponAbe2.chr4             C 0 T 314
s macFas5.chr5             189116734 16 + 189454096 ---CTGT-------------ATCTAATTGTGC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178535538 32 + 178775436 CAGCCGTATTTGCAGAAGCCATCTAATTCTGT
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e calJac3.chr3             190581809 51 - 190850796 T
e chlSab2.chr7             135476090 25 + 135778131 I
e rheMac3.chr5             183724448 25 + 184069350 I
e nomLeu3.chr7b            113820554  0 + 115148730 C
e panTro4.chr4             193052520  0 + 193495092 C

a score=7063.000000
s hg38.chr4_KI270925v1_alt    349335 18 +    555799 GGTAGTGAAGGAGAAGAT
s ponAbe2.chr4             198142399 18 + 198332218 GAAAGTGAAGGAGAAGAC
i ponAbe2.chr4             T 314 C 0
s macFas5.chr5             189116750 18 + 189454096 GGTGGGAAAGGAGAAGAC
i macFas5.chr5             C 0 T 150
s papAnu2.chr5             178535570 18 + 178775436 GGTGGGAAAGGAGAAGAC
i papAnu2.chr5             C 0 T 51
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e calJac3.chr3             190581809 51 - 190850796 T
e chlSab2.chr7             135476090 25 + 135778131 I
e rheMac3.chr5             183724448 25 + 184069350 I
e nomLeu3.chr7b            113820554  0 + 115148730 C
e panTro4.chr4             193052520  0 + 193495092 C

a score=613.000000
s hg38.chr4_KI270925v1_alt    349353 2 +    555799 TT
s ponAbe2.chr4             198142417 2 + 198332218 TT
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189116618 2 + 189454096 TC
i macFas5.chr5             T 150 C 0
s papAnu2.chr5             178535537 2 + 178775436 TC
i papAnu2.chr5             T 51 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e calJac3.chr3             190581809 51 - 190850796 T
e chlSab2.chr7             135476090 25 + 135778131 I
e rheMac3.chr5             183724448 25 + 184069350 I
e nomLeu3.chr7b            113820554 0 + 115148730 C
e panTro4.chr4             193052520 0 + 193495092 C

a score=33618.000000
s hg38.chr4_KI270925v1_alt    349355 26 +    555799 AGCCGTATCTGCAGAAGCCATCTAAT
s ponAbe2.chr4             198142419 26 + 198332218 AGCCATATCTGCACAAGCCACCTAAT
i ponAbe2.chr4             C 0 I 212
s rheMac3.chr5             183724473 26 + 184069350 AGCCGTATTTGCAGAAGCCATCTAAT
i rheMac3.chr5             I 25 C 0
s macFas5.chr5             189116620 26 + 189454096 AGCCGTATTTGCAGAAGCCATCTAAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178535539 26 + 178775436 AGCCGTATTTGCAGAAGCCATCTAAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135476115 26 + 135778131 AGCCGTATTTGCAGAAGCCATCTAAT
i chlSab2.chr7             I 25 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e calJac3.chr3             190581809 51 - 190850796 T
e nomLeu3.chr7b            113820554  0 + 115148730 C
e panTro4.chr4             193052520  0 + 193495092 C

a score=27115.000000
s hg38.chr4_KI270925v1_alt    349381 22 +    555799 TCTATGGTGGTGAAGGAGAAGA
s ponAbe2.chr4             198142657 22 + 198332218 TCTATGATGGTGAAGGAGAAGA
i ponAbe2.chr4             I 212 C 0
s rheMac3.chr5             183724499 22 + 184069350 TCTGTGGTGGGAAAGGAGAAGA
i rheMac3.chr5             C 0 I 4
s macFas5.chr5             189116646 22 + 189454096 TCTGTGGTGGGAAAGGAGAAGA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178535565 22 + 178775436 TCTGTGGTGGGAAAGGAGAAGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135476141 22 + 135778131 TCTGTGGTGGGAAAGGAGAAGA
i chlSab2.chr7             C 0 I 70
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e calJac3.chr3             190581809 51 - 190850796 T
e nomLeu3.chr7b            113820554  0 + 115148730 C
e panTro4.chr4             193052520  0 + 193495092 C

a score=753.000000
s hg38.chr4_KI270925v1_alt    349403 2 +    555799 TT
s ponAbe2.chr4             198142679 2 + 198332218 CT
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189116668 2 + 189454096 CT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178535587 2 + 178775436 CT
i papAnu2.chr5             C 0 T 52
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e calJac3.chr3             190581809 51 - 190850796 T
e chlSab2.chr7             135476163 70 + 135778131 I
e rheMac3.chr5             183724521 4 + 184069350 I
e nomLeu3.chr7b            113820554 0 + 115148730 C
e panTro4.chr4             193052520 0 + 193495092 C

a score=6589.000000
s hg38.chr4_KI270925v1_alt    349405 49 +    555799 TAGCCATATCTGCAGAAGCCTCCAAATTCTACGGTGGTGAAGGAGAAGA
s ponAbe2.chr4             198142681 49 + 198332218 TAGCCGTATCTGCAGAAGCCACATAATTCTATGGTGGTGAAGGAGAAGA
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189116670 31 + 189454096 -----GTATCT-------------AATTCTGCGGTGGGAAAGGAGAAGA
i macFas5.chr5             C 0 I 33
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e calJac3.chr3             190581809 51 - 190850796 T
e chlSab2.chr7             135476163 70 + 135778131 I
e papAnu2.chr5             178535589 52 + 178775436 T
e rheMac3.chr5             183724521  4 + 184069350 I
e nomLeu3.chr7b            113820554  0 + 115148730 C
e panTro4.chr4             193052520  0 + 193495092 C

a score=38.000000
s hg38.chr4_KI270925v1_alt    349454 1 +    555799 T
s ponAbe2.chr4             198142730 1 + 198332218 C
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189116734 1 + 189454096 C
i macFas5.chr5             I 33 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e calJac3.chr3             190581809 51 - 190850796 T
e chlSab2.chr7             135476163 70 + 135778131 I
e papAnu2.chr5             178535589 52 + 178775436 T
e rheMac3.chr5             183724521 4 + 184069350 I
e nomLeu3.chr7b            113820554 0 + 115148730 C
e panTro4.chr4             193052520 0 + 193495092 C

a score=2398.000000
s hg38.chr4_KI270925v1_alt    349455 22 +    555799 TTAGCCATATCTGCAGAAGCCT
s ponAbe2.chr4             198142731 22 + 198332218 TTAGCCGTATCTGCAGAATCCA
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189116735  4 + 189454096 -----------TG-------TA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178535537 22 + 178775436 TCAGCCGTATTTGCAGAAGCCA
i papAnu2.chr5             T 52 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e calJac3.chr3             190581809 51 - 190850796 T
e chlSab2.chr7             135476163 70 + 135778131 I
e rheMac3.chr5             183724521  4 + 184069350 I
e nomLeu3.chr7b            113820554  0 + 115148730 C
e panTro4.chr4             193052520  0 + 193495092 C

a score=18336.000000
s hg38.chr4_KI270925v1_alt    349477 27 +    555799 CCTAATTCTATGGTGGTGAAGGAGAAG
s panTro4.chr4             193052520 27 + 193495092 CCTAATCCTATGAAGGTGAAGGAGAAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198142753 27 + 198332218 TCTAATCCTATGATGGTGAAGGAGAAG
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189116739 27 + 189454096 TCTAATTGTGCGGTGGGAAAGGAGAAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178535559 27 + 178775436 TCTAATTCTGTGGTGGGAAAGGAGAAG
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e calJac3.chr3             190581809 51 - 190850796 T
e chlSab2.chr7             135476163 70 + 135778131 I
e rheMac3.chr5             183724521  4 + 184069350 I
e nomLeu3.chr7b            113820554  0 + 115148730 C

a score=1365.000000
s hg38.chr4_KI270925v1_alt    349504 1 +    555799 A
s panTro4.chr4             193052547 1 + 193495092 A
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198142780 1 + 198332218 A
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189116766 1 + 189454096 A
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178535586 1 + 178775436 A
i papAnu2.chr5             C 0 T 51
s calJac3.chr3             190581758 1 - 190850796 A
i calJac3.chr3             T 51 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e chlSab2.chr7             135476163 70 + 135778131 I
e rheMac3.chr5             183724521 4 + 184069350 I
e nomLeu3.chr7b            113820554 0 + 115148730 C

a score=40839.000000
s hg38.chr4_KI270925v1_alt    349505 48 +    555799 CTTAGCCATATCTGCAGAAGCCACCTAATTCTATGGTGGTGAAGGAGA
s panTro4.chr4             193052548 48 + 193495092 CTTAGCCGTATCTGCAGAAGCCACCTAATTCTATGGTGGTGAAGGAGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198142781 48 + 198332218 CTTAGCCATATCTGCAGAAGCCACCAAATCCTATGATGGTGAAGGAGA
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189116767 30 + 189454096 -----CTGT-------------ATCTAATTCTGTGGTGGGAAAGGAGA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178535536 48 + 178775436 CTCAGCCGTATTTGCAGAAGCCATCTAATTCTGTGGTGGGAAAGGAGA
i papAnu2.chr5             T 51 C 0
s calJac3.chr3             190581759 48 - 190850796 CTGAGCCGTATTTGCAGAAACCACCTAATTCTACGGTGCTTAAGAAGA
i calJac3.chr3             C 0 T 49
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e chlSab2.chr7             135476163 70 + 135778131 I
e rheMac3.chr5             183724521  4 + 184069350 I
e nomLeu3.chr7b            113820554  0 + 115148730 C

a score=1910.000000
s hg38.chr4_KI270925v1_alt    349553 2 +    555799 AG
s panTro4.chr4             193052596 2 + 193495092 AG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198142829 2 + 198332218 AG
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189116797 2 + 189454096 AG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178535584 2 + 178775436 AG
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e calJac3.chr3             190581807 49 - 190850796 T
e chlSab2.chr7             135476163 70 + 135778131 I
e rheMac3.chr5             183724521 4 + 184069350 I
e nomLeu3.chr7b            113820554 0 + 115148730 C

a score=4230.000000
s hg38.chr4_KI270925v1_alt    349555 3 +    555799 ACT
s panTro4.chr4             193052598 3 + 193495092 ACT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198142831 3 + 198332218 ACT
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189116799 3 + 189454096 ACT
i macFas5.chr5             C 0 T 101
s papAnu2.chr5             178535586 3 + 178775436 ACT
i papAnu2.chr5             C 0 T 51
s calJac3.chr3             190581758 3 - 190850796 ACT
i calJac3.chr3             T 49 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e chlSab2.chr7             135476163 70 + 135778131 I
e rheMac3.chr5             183724521 4 + 184069350 I
e nomLeu3.chr7b            113820554 0 + 115148730 C

a score=11021.000000
s hg38.chr4_KI270925v1_alt    349558 46 +    555799 TAGCCATATCTGCAGAAGCCACCTAATTCTATGGTGGTGAAAG---AGA
s panTro4.chr4             193052601  6 + 193495092 TAGCCA-------------------------------------------
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198142834 49 + 198332218 TAGCCGTATCTGCAGAATCCATCTAATCCTATGATGGTGAAGGAGAAGA
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178535538 46 + 178775436 CAGCCGTATTTGCAGAAGCCATCTAATTCTGTGGTGGGAAAGG---AGA
i papAnu2.chr5             T 51 T 48
s calJac3.chr3             190581761 46 - 190850796 GAGCCGTATTTGCAGAAACCACCTAATTCTACGGTGCTTAAGA---AGA
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e chlSab2.chr7             135476163 70 + 135778131 I
e macFas5.chr5             189116802 101 + 189454096 T
e rheMac3.chr5             183724521  4 + 184069350 I
e nomLeu3.chr7b            113820554  0 + 115148730 C

a score=1146.000000
s hg38.chr4_KI270925v1_alt    349604 2 +    555799 CT
s ponAbe2.chr4             198142883 2 + 198332218 CT
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178535536 2 + 178775436 CT
i papAnu2.chr5             T 48 C 0
s calJac3.chr3             190581807 2 - 190850796 CT
i calJac3.chr3             C 0 T 48
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e chlSab2.chr7             135476163 70 + 135778131 I
e macFas5.chr5             189116802 101 + 189454096 T
e rheMac3.chr5             183724521 4 + 184069350 I
e nomLeu3.chr7b            113820554 0 + 115148730 C
e panTro4.chr4             193052607 0 + 193495092 C

a score=822.000000
s hg38.chr4_KI270925v1_alt    349606 3 +    555799 TAG
s ponAbe2.chr4             198142885 3 + 198332218 TAG
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178535538 3 + 178775436 CAG
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190581761 3 - 190850796 GAG
i calJac3.chr3             T 48 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e chlSab2.chr7             135476163 70 + 135778131 I
e macFas5.chr5             189116802 101 + 189454096 T
e rheMac3.chr5             183724521 4 + 184069350 I
e nomLeu3.chr7b            113820554 0 + 115148730 C
e panTro4.chr4             193052607 0 + 193495092 C

a score=2596.000000
s hg38.chr4_KI270925v1_alt    349609 4 +    555799 CTGT
s panTro4.chr4             193052607 1 + 193495092 ---T
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198142888 4 + 198332218 CCAT
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189116701 4 + 189454096 CTGT
i macFas5.chr5             T 101 T 33
s papAnu2.chr5             178535541 4 + 178775436 CCGT
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190581764 4 - 190850796 CCGT
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e chlSab2.chr7             135476163 70 + 135778131 I
e rheMac3.chr5             183724521 4 + 184069350 I
e nomLeu3.chr7b            113820554 0 + 115148730 C

a score=9489.000000
s hg38.chr4_KI270925v1_alt    349613 13 +    555799 ATCTGCAGAAGCC
s panTro4.chr4             193052608 13 + 193495092 ATTTGCAGAATCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198142892 13 + 198332218 ATCTGCACAAGCC
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178535545 13 + 178775436 ATTTGCAGAAGCC
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190581768 13 - 190850796 ATTTGCAGAAACC
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e chlSab2.chr7             135476163 70 + 135778131 I
e macFas5.chr5             189116705 33 + 189454096 T
e rheMac3.chr5             183724521  4 + 184069350 I
e nomLeu3.chr7b            113820554  0 + 115148730 C

a score=25090.000000
s hg38.chr4_KI270925v1_alt    349626 26 +    555799 ATCTAATTCTACGGTGGTGAAGGAGA
s panTro4.chr4             193052621 26 + 193495092 ATCCAATTCTACGGTGGTGAAGGAGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198142905 26 + 198332218 ACCTAATCCTATGAAAGTGAAGGAGA
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189116672 26 + 189454096 ATCTAATTCTGCGGTGGGAAAGGAGA
i macFas5.chr5             T 33 C 0
s papAnu2.chr5             178535558 26 + 178775436 ATCTAATTCTGTGGTGGGAAAGGAGA
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190581781 26 - 190850796 ACCTAATTCTACGGTGCTTAAGAAGA
i calJac3.chr3             C 0 T 45
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e chlSab2.chr7             135476163 70 + 135778131 I
e rheMac3.chr5             183724521  4 + 184069350 I
e nomLeu3.chr7b            113820554  0 + 115148730 C

a score=3296.000000
s hg38.chr4_KI270925v1_alt    349652 4 +    555799 AGAT
s panTro4.chr4             193052647 4 + 193495092 AGAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198142931 4 + 198332218 AGAC
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189116698 4 + 189454096 AGAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178535584 4 + 178775436 AGAC
i papAnu2.chr5             C 0 T 51
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e calJac3.chr3             190581807 45 - 190850796 T
e chlSab2.chr7             135476163 70 + 135778131 I
e rheMac3.chr5             183724521 4 + 184069350 I
e nomLeu3.chr7b            113820554 0 + 115148730 C

a score=20485.000000
s hg38.chr4_KI270925v1_alt    349656 51 +    555799 TTAGCCGTATCTGCAGAAGCCATCTAATTCTATGGTGGTGAAGGAGAAGAT
s panTro4.chr4             193052651 48 + 193495092 TTAGCTGTATCTGCAGAAGCCATCTAATTTTATGGTGGTG---GAGAAGAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198142935 51 + 198332218 TTAGCCATATCTGCACAAGCCACCTAATCCTATGAAGGTGAAGGAGAAGAC
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178535537 51 + 178775436 TCAGCCGTATTTGCAGAAGCCATCTAATTCTGTGGTGGGAAAGGAGAAGAC
i papAnu2.chr5             T 51 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e calJac3.chr3             190581807 45 - 190850796 T
e chlSab2.chr7             135476163 70 + 135778131 I
e macFas5.chr5             189116702  0 + 189454096 C
e rheMac3.chr5             183724521  4 + 184069350 I
e nomLeu3.chr7b            113820554  0 + 115148730 C

a score=1365.000000
s hg38.chr4_KI270925v1_alt    349707 1 +    555799 T
s panTro4.chr4             193052699 1 + 193495092 T
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198142986 1 + 198332218 T
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113820554 1 + 115148730 t
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189116702 1 + 189454096 T
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178535588 1 + 178775436 T
i papAnu2.chr5             C 0 T 51
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e calJac3.chr3             190581807 45 - 190850796 T
e chlSab2.chr7             135476163 70 + 135778131 I
e rheMac3.chr5             183724521 4 + 184069350 I

a score=422.000000
s hg38.chr4_KI270925v1_alt    349708 1 +    555799 T
s panTro4.chr4             193052700 1 + 193495092 T
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198142987 1 + 198332218 T
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113820555 1 + 115148730 t
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178535538 1 + 178775436 C
i papAnu2.chr5             T 51 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e calJac3.chr3             190581807 45 - 190850796 T
e chlSab2.chr7             135476163 70 + 135778131 I
e macFas5.chr5             189116703 0 + 189454096 C
e rheMac3.chr5             183724521 4 + 184069350 I

a score=54737.000000
s hg38.chr4_KI270925v1_alt    349709 45 +    555799 AGCCGTATCTGCAGAAGCCTCCTAATTCTACGGTGGTGAAGGAGA
s panTro4.chr4             193052701 45 + 193495092 AGCCATATTTGCAGAATCCATCCAATTCTACGGTGGTGAAGGAGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198142988 45 + 198332218 agccatatctgcagaagccacctaattctatggtggtgaaggaga
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113820556 45 + 115148730 agccatatcttcagaagccatctaattctatggtggtgaatgata
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189116703 28 + 189454096 -----------------GTATCTAATTCTGCGGTGGGAAAGGAGA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178535539 45 + 178775436 AGCCGTATTTGCAGAAGCCATCTAATTCTGTGGTGGGAAAGGAGA
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190581762 45 - 190850796 AGCCGTATTTGCAGAAACCACCTAATTCTACGGTGCTTAAGAAGA
i calJac3.chr3             T 45 T 45
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e chlSab2.chr7             135476163 70 + 135778131 I
e rheMac3.chr5             183724521  4 + 184069350 I

a score=4230.000000
s hg38.chr4_KI270925v1_alt    349754 3 +    555799 AGA
s panTro4.chr4             193052746 3 + 193495092 AGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198143033 3 + 198332218 aga
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113820601 3 + 115148730 aga
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189116731 3 + 189454096 AGA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178535584 3 + 178775436 AGA
i papAnu2.chr5             C 0 T 51
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e calJac3.chr3             190581807 45 - 190850796 T
e chlSab2.chr7             135476163 70 + 135778131 I
e rheMac3.chr5             183724521 4 + 184069350 I

a score=43419.000000
s hg38.chr4_KI270925v1_alt    349757 52 +    555799 CTTAGCTGTATCTGCAGAAGCCATCTAATTCTATGGTGGTGAAGGAGAAGAT
s panTro4.chr4             193052749 52 + 193495092 CTTAGCCATATCTGCAGAAGCCTCCTAATTCTGCAGTGGTGAAGGAGAAGAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198143036 52 + 198332218 cttagccgtatctgtagaagccacctaattctatggtggtgaaggagaagac
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113820604 52 + 115148730 cttagccatatttgcagaagcaatctaatcctatagtggtgaaggagaagac
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189116734 33 + 189454096 -----CTGT-------------ATCTAATTGTGCGGTGGGAAAGGAGAAGA-
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178535536 52 + 178775436 CTCAGCCGTATTTGCAGAAGCCATCTAATTCTGTGGTGGGAAAGGAGAAGAC
i papAnu2.chr5             T 51 T 51
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18019610 19 -  59632846 I
e calJac3.chr3             190581807 45 - 190850796 T
e chlSab2.chr7             135476163 70 + 135778131 I
e rheMac3.chr5             183724521  4 + 184069350 I

a score=2120.000000
s hg38.chr4_KI270925v1_alt    349809 2 +    555799 TT
s panTro4.chr4             193052801 2 + 193495092 TT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198143088 2 + 198332218 tt
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113820656 2 + 115148730 tt
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178535537 2 + 178775436 TC
i papAnu2.chr5             T 51 C 0
s canFam3.chr16             18019629 2 -  59632846 tt
i canFam3.chr16            I 19 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e calJac3.chr3             190581807 45 - 190850796 T
e chlSab2.chr7             135476163 70 + 135778131 I
e macFas5.chr5             189116767 0 + 189454096 C
e rheMac3.chr5             183724521 4 + 184069350 I

a score=25377.000000
s hg38.chr4_KI270925v1_alt    349811 19 +    555799 AGCCATATCTGCAGAAGCC
s panTro4.chr4             193052803 19 + 193495092 AGCTGTATCTGCAGAAGCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198143090 19 + 198332218 agccgtatctgcagaaatc
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113820658 19 + 115148730 agctgtatctgcagaagcc
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189116767  5 + 189454096 --CTGTA------------
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178535539 19 + 178775436 AGCCGTATTTGCAGAAGCC
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190581762 19 - 190850796 AGCCGTATTTGCAGAAACC
i calJac3.chr3             T 45 C 0
s canFam3.chr16             18019631 19 -  59632846 agccacatttgcagcagca
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e chlSab2.chr7             135476163 70 + 135778131 I
e rheMac3.chr5             183724521  4 + 184069350 I

a score=1509138.000000
s hg38.chr4_KI270925v1_alt    349830 497 +    555799  
s panTro4.chr4             193052822 496 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198143109 499 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113820677 496 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183724525 489 + 184069350  
i rheMac3.chr5             I 4 C 0
s macFas5.chr5             189116772 491 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178535558 489 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135476233 494 + 135778131  
i chlSab2.chr7             I 70 C 0
s calJac3.chr3             190581781 436 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18019650 501 -  59632846  
i canFam3.chr16            C 0 I 147
e mm10.chr8                 87715729 9203 - 129401213 I

a score=1153920.000000
s hg38.chr4_KI270925v1_alt    350327 400 +    555799 --------taaat-aaaaaagtaaaag--------------------------------taaatacagtaaaat-----taaagggaaaatctaaaaattattagagggaaaacagtggctatagaagataagcagagacaatctaaaatatatc----------aaaaaaggaaggtatggaaagaaaaaa---aaaaagacagcattgaaagagcatgaat-----------ccctttaagaactgattcaacaaaacttttccagaat-aaaattaggttccacagaaaaggaaacactaagaacaccctacaaagttttaaagaaacattaaggaaaagatccttt-----------------aatcaagccgctc-ttaaaaaagagaatgtaacaggctagtctcatatttttt-cctagcaaaatttaatgcc-aagatacagtggcccattacttacaagatattcaaaaagtggaatgaaaa
s panTro4.chr4             193053318 395 + 193495092 --------taaat-aaaaatgtaaaag--------------------------------taaatacagtaaaat-----taaagggaaaatctaaaaattattagaaggaaaacagtggctatagaagataagcagagacaatctaaaatatatc----------aaaaaaggaaggtatggaaagaaaaaa---aaaaagacagcattgaaagagcatgaat-----------ccctttaagaactgattcagcaaaacttttccagaat-aaaattaggttccacagaaaaggaaacactaagaacaccctagaaaattttaaagaaacattaaggaaaagatccttt-----------------aatcaagccactc-ctaaaaaagagaatg------gctagtctcatatttttttcctagcaaaatttaatgcc-aagatacagtggcccattacctacaagatattcaaaaagtggaatgaaaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198143608 404 + 198332218 --------gaaat-aaaaaagtaaaag--------------------------------taaataaagtaaaattaaagtaaagggaaaatctaaaaattattagagggaaaacagtggctatagaagataagcagagacaatctaaaatatatc----------agaaaaggaaggtatggaaag-aaaaa---aaaaagacagcattgaaacagcatgaat-----------ccctttaagaactgattcaacaaaacttttccagaat-aaaattaggttccacagaaaaggaaacactaagaacaccctagaaagttttaaagaaacattaaggaaaatatccttt-----------------aatcaagccactc-ttaaaaaagagaatgtaacaggccagtctcatatttttt-cctagcaaaatttaatgcc-aagatacagtggcccattacttacaagatattcaaaaagtggaatgaaaa
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113821173 409 + 115148730 --------gaaat-aaaaaagtaaaag--------------------------------taaataaagtaaaat-----taaagggaaaatctaaaaagcattagagggaaaacagtggctataaaagataagcagagacaatctaaaatatatc----------aaaaaaggaaggtatggaaag-aaaaa---aaaaagacagcattgaaacagcacgactgactcaagaaaacttttaagaactgactcaagaaaacttttccagaat-aaaattaggttccacagaaaaggaaacactaag-acatcctagaaagttttaaagaaacattaaagaaaatatccttt-----------------aatcaagccacta-ttaaaaaagagaatgtaactggctagtctcatatttttt-cctagcaaaatttaatgcc-aagatacagtggcccaatacttacaagatattcaaaaagcggaatgagaa
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183725014 395 + 184069350 --------gaaat--aaaatgtgaaag--------------------------------taaataaagtaaaat-----taaagggaaaatctaaaaagtattagagggaaaacaatggctctagaagataagtagagacaatctaaaatatatt----------aaaaaaggaaggtatggaaag-aaaaa---aaaaagacagcactgaaacagcatgaat-----------ccctttaagaactgattcaagaaaacttttccagaat-aaaattaggttccacagaaaaggaaacactaagaacatcctagaaagttttaaagaaacattaaagaaaatatccttt-----------------aatcgagccact---taaaaaagagaatgtaattggctagtctt-tttttttt-cctagcaaaatttaatgcc-aagatgcagtggcccaatacttacaagatattcaaaaagcgaaatgagaa
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189117263 395 + 189454096 --------gaaat--aaaatgtgaaag--------------------------------taaataaagtaaaat-----taaagggaaaatctaaaaagtattagagggaaaacaatggctctagaagataagtagagacaatctaaaatatatt----------taaaaaggaaggtatggaaag-aaaaa---aaaaagacagcactgaaacagcatgaat-----------ccctttaagaactgattcaagaaaacttttccagaat-aaaattaggttccacagaaaaggaaacactaagaacatcctagaaagttttaaagaaacattaaagaaaatatccttt-----------------aatcaagccact---taaaaaagagaatgtaattggctagtctt-tttttttt-cctagcaaaatttaatgcc-aagatgcagtggcccaatacttacaagatattcaaaaagcgaaatgagaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178536047 394 + 178775436 --------aaaat--aaaatgtgaaag--------------------------------taaataaagtaaaat-----taaagggaaaatctaaaaagtattagagggaaaaCAATGGCTCTAGACGATAAGTAGAGAccatctaaaatatatt----------taaaaaggaaggtatggaaag-aaaaa---aaaaagacagcactGAAACAGCATGAAT-----------CCCTTTAAGAACTGATTCAAGAAAACTTTTCCAGAATAAAAATTAGGttccacagaaaaggaaacactaaGAACATCCTAGaaagttttaaagaaacattaaagaaaatatccttt-----------------aatCGAGCCact---taaaaa--agaatgtaattggctagtctt-tttttttt-cctagcaaaaTTTAATGCC-AAGATGCAGTGGCCCAATACTTACAAGATATTCAAAAAGCGAAATAAGAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135476727 399 + 135778131 --------gaaat--aaaatgtaaaag--------------------------------taaataaagtaaaat-----taaaggaaaaatctaaaaagtattacagggaaaataacggctctagaagataagcagagacaatctaaaatatatt----------taaaaatgaaggtatggaaag-aaaaaaacaaaaagacagcactgaaacagcatgaat-----------ccctttaagaattgattcaagaaaacttttccagaat-aaaaTTAGGTTCCACAGAAAAGGAAACACTAAGAACATCCAAGAAAGTTTTAAAGAAACATTAAAGAAAATATCCTTT-----------------Aattgagccact---taaaaaagagaatgtaactggctagactcatatttttt-cctagtaaaatttaatgcc-aagatgtagtggcccaatacttacaagatattcaaaaagcgaaaggagaa
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190582217 402 - 190850796 --------gaaataaaaaaattaaaag--------------------------------taaa-aaagtaagattaaaataaagggagaatctaaaaaatattagcgggaatacaatggctacagaagataagcagagacaatctgaaatatac------------aaaaataaaggaactgaaag----aa---aaaacgacagcattgaaaaaacatgaat-----------ctctttaagaactgattcaagaaaacttttccagaat-aaaattcgattccacagaaaaggaaacactaagaacatcctggaaagttttaaa-----------gaaaaaatcctttagtctgtcaggaaaaagaatcaagccattc-ataaaaaagagaatgtaacaagccagccta--ttttttt-gctagcaaaatgtaatgcc-aagacacagcggcacaatacttacaagcttttc-aaaagtgagatgagaa
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18020298 458 -  59632846 tgaataaataaat--aaaatcttaaagaaaaaatatatagaggatagaaatgaaagaaataaatgaaatgaaattgaaataaaggaagagttttaaagggattagagagaaaataatgactacagaaaataagccaagatgat----gagataccacctcccccaaacagaggggagtattgaaag---aag---aaaatcaaagtattgaaacagcac-aat-----------gacttgaagagctaattcaagaaaacttttcaaaaat-aagattaggttcccaaaaaaggaaaatactaagaatatcctagaaactcttaaaaactcac--agaaaaaaatcctttagtctgtcaggaaaaaggatcaagtctttcgcaaaaaaagagaatgcaactatctggcata--ttttttt-cacaacagcatttaaaaccaaaaatacagtga---aacatttacaagctattctaaaagagaaactgaaa
i canFam3.chr16            I 147 I 304
e mm10.chr8                 87715729 9203 - 129401213 I

a score=612071.000000
s hg38.chr4_KI270925v1_alt    350727 214 +    555799 ccaaaggttttatacctagtcaggctacatttcaaa-gtatacttcaggcagttttaaatacacacaaactcagggaatattttcctacttgggaaaagtcccagagaacaaactttagccaacaaagagataactaaggaaaaactatggtgaaatattataattgtgaattgtgttgactaaaactaaaataaacatgagaaccagggtaata
s panTro4.chr4             193053713 213 + 193495092 ccaaaggttttatacctagtcaggcta-atttcaaa-gtatacttcaggcagttttaaatacacacaaactcagggaatattttcctacttgggaaaagtcccagagaacaaactttagccaacaaagagataactaaggaaaaactatggtgaaatattataattgtgaattgcattgactaaaactaaaataaacatgagaaccagggtaata
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198144012 214 + 198332218 ccaaaggttttatacctagtcaggctacatttcaaa-gtatacttcaggcagttttaaatacacacaaactcagggaatattttcctacttgggaaaagtcccagagaacaaactttagccaacaaagagataactaaggaaaaactatggtgaaatattataattgtgaattgcattgactaaaactaaaataaacatgagaaccagggtaata
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113821582 212 + 115148730 ccaaaggttttatacctagtcaggctatatttcaaa-gtatacttcaggcagttttaaatacacacaaactcagggaatattttcctacttgggaaaagtcccagagaacaaactttagccaacaaagagataactaagg--aaactatgctgaaatattataattgtgaattgcattgagtaaaactaaaataaacatgagaaccagggtaata
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183725409 213 + 184069350 acaaaggttttctgcctagtcaggctatacgtcaaatgtatacttcaggcagttttaaatacatacaaactcagggaatattttcctacttgggtaaaaccccagagaacaaactttagccaacaaagagataactaagg--aaactatgatagactattataattgtgaattgcattgactaaaactaaaataaacacaggaaccagggtaata
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189117658 213 + 189454096 acaaaggttttctgcctagtcaggctatacgtcaaatgtatacttcaggcagttttaaatacatacaaactcagggaatattttcctacttgggtaaaaccccagagaacaaactttagccaacaaagagataactaagg--aaactatgatagactattataattgtgaattgcattgactaaaactaaaataaacacaggaaccagggtaata
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178536441 213 + 178775436 ACAAAGGTTTTCTACCTAGTCAGGCTATATGTCAAATGTATACTTCAGGCAGTTTTAAACACATACAAACTCAGGGAATATTTTCCTACTTGGGTAAAACCCCAGAGAACAAACTTTAGCCAACAAAGAGATAACTAAGG--AAACTATGATGGACTATTACAATTGTGAATTGCATtgactaaaactaaaataaacacaGGAACCAGggtaata
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135477126 213 + 135778131 acaaaggttttctacctagtcaggctatatgtcaaatgtatacttcaggcagttttaaatacacacaaactcagggaatatcttcctacttgggaaaaaccccagagaacaaactttagcctacaaatagataacaaagg--aaactatgatggactattataattgtgaattgcattgactaaaactaaaataaacacaggaaccagggtaata
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190582619 213 - 190850796 ccgaaggttttatacctggtcagactctatttcaaatgtatacttcagacagtttgaaatacgcacaaacttggtgaatatttgtctacttgggaagagtcccagagaataaacttcagccaataaagagatgattaagg--aaactatggtgaaatattattattgtgaatcgaattgactaaaactaaaataaacataagaaccagggtaata
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18020756 304 -  59632846 I

a score=835557.000000
s hg38.chr4_KI270925v1_alt    350941 295 +    555799 aaatgcatataaatgccatatgccctggaaataaaccaatatcgaaactaacaaaaagtggaagaagaaggaggaaagaaTGGAAGACATAGGGTAGATCAAG--GCTGC---TGCATACGATG---TTTGTACAGTTTTCAACTTTGAGGGGTCTTGTTTGCTGAGACCCTGACATCATCTGCAG-CTCCAGAGCTGAG-AGACACGATGTGCACACACACAGGTGGGGGTCTGAGGAGGAGGACTTGGTCAActcagctgtaacagccaggactcaaagtggatcattcaaagcagtaaatca
s panTro4.chr4             193053926 295 + 193495092 aaatgaatataaatgccatatcccctggaaataaaccaatatcaaaactaacaaaaagtagaagaagaaggaggaaagaaTGGAAGACATAGGGTAGATCAAG--GCTGC---TGCATACGATG---TTTGTACAGTTTTCAACTTTGAGGGGTCTCGTTTGCTGAGACCCTGACATCATCTGCAG-CTCCAGAGCTGAG-AGACACGATGTGCACACACACAGGTGGGGGTCTGAGGAGGAGGACTTGGTCAACTCAGCTATAACAGCCAGGACTCAAAGTGGATCATTCAAAGCAGTAAATCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198144226 295 + 198332218 aaatgaatataaatgccatatgccctggaaataaaccagtatcaaaactaacaaaaagtggaagaagaaggaggaaagaaTGGAAGACATAGGGTAGATCAAG--GCTGC---TGCATACGATG---TTTGTACAGTTTTTAACTTTGAGGGGTCTTGTTTGCTGAGACCCTGACATCACCTGCAG-CTCCAGAGCTGAG-AGACATGATGTGCACACACACAGGTGGGGGTCTGAGGAGGAGGACTTGGTCAcctcagctgtaacagccaggactcaaagtggatcatgcaaagcagtaaatca
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113821794 290 + 115148730 aaatgaatataaatgccatatgccctggaaataaaccagtattgaaactaacaaaaagtggaagaggaaggaggaaagaatgggggACATAGGGTAGATCAAG--GCTGC---TGCATACGATG---TTTGTACAGTTTTCGACTCTGAGGGGTCTCATTCACTGAGACCCTGACATCACCTGCAG-CTCCAGAGCTGAG-ACACACGATGTGCACACACACAGGTGGGGGTCTGAGGAGGAGAACTTGGTCACCTCAGCTGTAACAGCCAGGACTCAAAGTGGATCATTCAAAGCAGT-----A
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183725622 277 + 184069350 aaatgaatataaatgccatatgccctgg----------------aaactaacaaaaagtggaagaggaaggaggaaagaaTGGAGGACACAGGGTAGATCAAG--CCTGC---CGCATACGATG---TTTGTACAGTTTTCAACTCTGAGGGGTCTTGTTCGCTGAGACCCTGACCTCACCAGCAG-CTCCAGAGCTGAG-AGACATGATGTG--CACACACAGGTGGGGGACTGAGGAGGAGGACTTGGTCACCTCAGCGGTAACAGCCAGGACTCAAAGTGGATCATTTAAAGCAGTAAATCG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189117871 277 + 189454096 aaatgaatataaatgccatatgccctgg----------------aaactaacaaaaagtggaagaggaaggaggaaagaaTGGAGGACACAGGGTAGATCAAG--CCTGC---CGCATACGATG---TTTGTACAGTTTTCAACTCTGAGGGGTCTTGTTCGCTGAGACCCTGACCTCACCAGCAG-CTCCAGAGCTGAG-AGACATGATGTG--CACACACAGGTGGGGGACTGAGGAGGAGGACTTGGTCACCTCAGCGGTAACAGCCAGGACTCAAAGTGGATCATTTAAAGCAGTAAATCG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178536654 277 + 178775436 aaatgaatataaatgccATATGCCCTGG----------------AAACTAACAaaaagtggaagaggaaggaggaaagaatggaGGACACAGGGTAGATCAAG--CCTGC---CGCATACGATG---TTTGTACAGTTTTCAACTCTGAGGGGTCTTGTTCGCTGAGACCCTGACCTCACCAGCAG-CTCCAGAGCTGAG-AGACACGATGTG--CACACACAGGTGGGGGACTGAGGAGGAGGACTTGGTCACCTCAGCGGTAACAGCCAGGACTCAAAGTGGATCATTTAAAGCAGTAAATCG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135477339 275 + 135778131 aaatgaatataaatgccatatgccctgg----------------aaactaacaaaaagtggaagaggaaggaggaaagaaTGGAGGACACAGGGTAGATCAAG--CCTGC---CGCATACCATG---TTTGTACAGTTTTCAACTCTGAGGGGTCTTGTTCGCTGAGACCCTGACCTCACCAGCAG-CTCCAGAGCTGAG-AGAC--GATGTG--CACACACAGGTGGGGGACTGAGGAGGAGGACTTGGTCACCTCAGCGGTAACAGCCAGGACTCAAAGTGGATCATTCAAAGCAGTAAATCG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190582832 284 - 190850796 aaatacatacaaatgccgtatgcactggaaatAAACCAGGACTGCAGCTAACAAGAAGTGGGAGAG-----------GAATGGAGCACGCAGGGTAGATGACG---CTGC---CGCATATGATGGCTTTTGTACAGTGTTCACCTCTGAGGGGCCTCATTCTCCAAGACCCTGATGTCGCCAGCAG-CCCCAGAACTGAG-AGGCACGATGTG--CACACACAGGTGGGGTTCTGACGATGGGGACTTGGTCACCTCAGCTGTATCAGCCAGAACTCAAAGTGGATCATTTAAAGGAGTAAATCA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18021060 280 -  59632846 aaatacacaagaa---------ctcaggcaatatACAAATATTACAGCTAACAAAAACCAAAAGAA-------GAAAGAATGTAATACAGAGAGTAAATTAAGAGTCTGCACacagatatgcag---tttgtataattcacaatgccaaattatatcattctcctaaattctaatatgaatggcaacctctagagctgtgtagAGACAATGTAGTCAAACACA------GTAATCCTGAGATTTACCTAATTACCTTATCTATAATCACTAGGAGTCAAAGTTTATCATTTAaagtgataaatca
i canFam3.chr16            I 304 I 127
e mm10.chr8                 87715729 9203 - 129401213 I

a score=2275377.000000
s hg38.chr4_KI270925v1_alt    351236 770 +    555799  
s panTro4.chr4             193054221 773 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198144521 773 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113822084 788 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183725899 754 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189118148 754 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178536931 755 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135477614 755 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190583116 717 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18021467 742 -  59632846  
i canFam3.chr16            I 127 I 200
e mm10.chr8                 87715729 9203 - 129401213 I

a score=590103.000000
s hg38.chr4_KI270925v1_alt    352006 197 +    555799 -----------------TGATCTCATCCCCAGACACCACCCCTCTAAGTAAAGGAAATTaggatgccatctcacatcaaggggac-agatgagatgtttcaacaatgttgatgtttggacaactaggaagatatatgaaaaaataaagttagattcatttcccacatcacataccaaaataaattccaaataagacaaaaactttaatgtgaata
s panTro4.chr4             193054994 197 + 193495092 -----------------TGATCTCATCCCCAGACACCACCCCTCTAAGTAAAGGAAATTAGGATGCCATCTCACAtcaaggggac-agatgagatgtttcaacaatgttgatgtttggacaactaggaagatatatgaaaaaataaagttagattcatttcccacatcacatagaaaaataaattccaaatacgacaaaaactttaatgtgaata
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198145294 198 + 198332218 -----------------TGATCTCATCCCCAGACCCCACCCCTCTAAGTAAAGGAAATTAGGATGCCATCTCACAtcaaggggacaagatgagatgtttcgacaatgttgatgtttggacaactaggaagatatatgaaaaaataaagttagattcatttcccacatcacataccaaaataaattccaaataagacaaaaactttaatgtgaata
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113822872 198 + 115148730 -----------------TGATCTCATCCCCAGACCCCACCTCTCTAAGTAAAGGAAATTAGGATGCCATCTCACAtcaagagggcaagatgagatgtttcaacaatgttgatgtttggacaactaggaagatacatgaaaaaataaagttacattcatttcccacatcacataccaaaataaactccaaataagacaaaaactttaatgtgaata
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183726653 215 + 184069350 aaaaggtgattgccagcagacctcatccccAGACCCCACCCCTCTAAGTAAAGGAAAGTAGGACGCCATCTCACAtcaaggggacaagatgagatgtttcaacaatgttgatgtttagacaactaggaagatacgcgaaaaaataaagttagattcatttcccacgtcacgtaccaaaataaattccaaataagacaaaagctttaatgtaaata
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189118902 215 + 189454096 aaaaggtgattgccagcagacctcatccccAGACCCCACCCCTCTAAGTAAAGGAAAGTAGGATGCCATCTCACAtcaaggggacaagatgagatgtttcaacaatgttgatgtttagacaactaggaagatacgcgaaaaaataaagttagattcatttcccacgtcacgtaccaaaataaattccaaataagacaaaagctttaatgtaaata
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178537686 215 + 178775436 AAAAGGTGATTGCCAGCAGACCCCATCCCCAGACCCCACCCCTCTAAGTAAAGGAAAGTAGGACGCCATCTCACATCAAGGGGACAAGATGAGATGTTTCAACAATGTTGATGTTTAGACAACTAGGAAGATACgcgaaaaaataaagttagattcATTTCCCACGTCACGTACcaaaatgaattccaaataagacaaaagctttaatgtaaata
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135478369 215 + 135778131 aaaaggtgattgccagcagacctcatccccAAACCCCTCCCCTCTAAGTAAAGGAAATTaggatgccatcccacatcaaggggacaagatgagatgtttcaacaatgttgatgtttggacaactaggaagatacatgaaaaaacaaagttagattcatttcccacgtcacataccaaaataaattccaaataagacaaaagctttaatgtaaata
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190583833 215 - 190850796 aaaggttgactgccagtatgtctcatccccAGACTCCAACCCTCTGCGTAAAGGAAATTAGGATGGCATCTCACAtcaaggggacaagatgagatgtttcaacaacattggtatttggacaactagaaaaatatatgaaaaaatagagttggattcatttcccacatcacgtaccaaaataaattccaaatAAGAGAAAACTTTTGATCTAAATA
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18022209 200 -  59632846 I

a score=8334.000000
s hg38.chr4_KI270925v1_alt    352203 10 +    555799 aaaataaaac
s panTro4.chr4             193055191 10 + 193495092 aaaataaaac
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198145492 10 + 198332218 aaaataaaac
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113823070 10 + 115148730 aaattaaaac
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183726868 10 + 184069350 aaaataaaac
i rheMac3.chr5             C 0 I 405
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18022209 200 -  59632846 I
e calJac3.chr3             190584048  0 - 190850796 C
e chlSab2.chr7             135478584  0 + 135778131 C
e papAnu2.chr5             178537901  0 + 178775436 C
e macFas5.chr5             189119117  0 + 189454096 C

a score=546.000000
s hg38.chr4_KI270925v1_alt    352213 1 +    555799 t
s panTro4.chr4             193055201 1 + 193495092 t
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198145502 1 + 198332218 t
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113823080 1 + 115148730 t
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18022209 200 -  59632846 I
e calJac3.chr3             190584048 0 - 190850796 C
e chlSab2.chr7             135478584 0 + 135778131 C
e papAnu2.chr5             178537901 0 + 178775436 C
e macFas5.chr5             189119117 0 + 189454096 C
e rheMac3.chr5             183726878 405 + 184069350 I

a score=0.000000
s hg38.chr4_KI270925v1_alt    352214 306 +    555799 aggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcatgaggtcaggagatcgagaccatcctggctaacaaggtgaaaccccgtctctactaaaaatacaaaaaaaattagccgggcgcagtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagattgcgccactgcagtccgcagtccggcctgggcgacagagcgagactccgtctcaaaaaaataaataaa
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18022209 200 -  59632846 I
e calJac3.chr3             190584048   0 - 190850796 C
e chlSab2.chr7             135478584   0 + 135778131 C
e papAnu2.chr5             178537901   0 + 178775436 C
e macFas5.chr5             189119117   0 + 189454096 C
e rheMac3.chr5             183726878 405 + 184069350 I
e nomLeu3.chr7b            113823081   0 + 115148730 C
e ponAbe2.chr4             198145503   0 + 198332218 C
e panTro4.chr4             193055202   0 + 193495092 C

a score=1209.000000
s hg38.chr4_KI270925v1_alt    352520 30 +    555799 taaataaaataaa-ataaaat----aaaataaaat
s canFam3.chr16             18022409 35 -  59632846 taaataaaataaggataaaaccataaaaGTAACAT
i canFam3.chr16            I 200 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e calJac3.chr3             190584048  0 - 190850796 C
e chlSab2.chr7             135478584  0 + 135778131 C
e papAnu2.chr5             178537901  0 + 178775436 C
e macFas5.chr5             189119117  0 + 189454096 C
e rheMac3.chr5             183726878 405 + 184069350 I
e nomLeu3.chr7b            113823081  0 + 115148730 C
e ponAbe2.chr4             198145503  0 + 198332218 C
e panTro4.chr4             193055202  0 + 193495092 C

a score=11685.000000
s hg38.chr4_KI270925v1_alt    352550 11 +    555799 aaaataaaacc
s macFas5.chr5             189119117 11 + 189454096 aaaataaaacc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178537901 11 + 178775436 aaaataaaacc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135478584 11 + 135778131 aaaataaaacC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190584048 11 - 190850796 AAAATAAAACC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18022444 11 -  59632846 AGTATGAAATT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e rheMac3.chr5             183726878 405 + 184069350 I
e nomLeu3.chr7b            113823081  0 + 115148730 C
e ponAbe2.chr4             198145503  0 + 198332218 C
e panTro4.chr4             193055202  0 + 193495092 C

a score=671814.000000
s hg38.chr4_KI270925v1_alt    352561 288 +    555799 atacaaaaacataaaataacattaaagaatttctttaaaacctggaagtgaggatgacctttttat----ttctgaaaatccagaatccataaagtattaacattttatcacatacaaattaaaaatttctacatggc---aaaa--aataaggtatttggatctaaagacatataacaaattggagggcagacatttgtaatcatatcacagataacgggtgaatctctctgtataggaactt-ttagaaatgaagaaggaaaagataaacaacag--aaaaggattcaaagattaata------
s panTro4.chr4             193055202 287 + 193495092 atacaacAACATAAAATAACATTAAAGAATTTCTTTAAAGCCTGGAAGTGAGGATGACCTTTTTAT----TTCTGAAAATCCAGAATCCATAAAGTATTAACATTTTATCACACACAAATTAAAAATTTCTACATGG----AAAA--ATTATTGTATTTGGATCTAAAGACATATAACAAATTGGAGGGCAGACATTTGTAATCATATCACAGATAACGAGTGAATCTCTCTGTATaggaagtt-ttagaaatgaagaaggaaaagataaacaacag--aaaaggattcaaagataaata------
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198145503 282 + 198332218 atacaaaaacataAAATAATATT----AATTTCTTTAAAACCTGGAAGTGAGGATGACCTTTTTAT----TTCTGAAAATCCAGAATCCATAAAGTATTAACATTTTATCATATACAAATTAAAAATTTCTACATGGC---AAAA--AATAAGGTATTTGGATCTAAAGACATGTAACAAATTGGAGGGCAGACATTTGTAATCATATCACAGACAATGAGTGAATCTCTCTGTATAGGAAGTT-TTAGAAATGAAGAAGGAAAAG--TAACAACAG--AAAAGGATTCAAAGataaata------
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113823081 288 + 115148730 atacaaAAACATAAAATAACATTAAAGAATTTCTTTAAAACCTGGAAGTGAGGACAACCTTTTTAT----TTCTGAAAATCCAGAATCCATAAAGTATTAACACTTTATCACATACAAATTAAAAATTTCTACATGGC---AAAA--AATAAGGTATTTGGATCTAAAGACATATAACAAATTGGAGGGCAGACATTTGTAATCATATCACAGATAACGAGTGAATCTCTCTGtataggaagtt-ttagaaatgaagaaggaaaagattaacaacag--aaaaggattcaaagataaata------
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189119128 288 + 189454096 acacaaaaacataaaataacattaaagaatttctttaaaacctggaagtaagggcaacctttttat----ttctgaaaatccagaatccatcaagtattaacattttattacatacaaattaaaaatttctacatggc---aaaa--aataaggtatttgaatctaaagacatataacaaattggaaggcagacatttgtaatcatatcacagataacgaatgaatctctCTATATAGGAAGTT-TTAGATGTGaagaaggaaaagattaacaacag--aaaaggattcaaagataaaca------
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178537912 284 + 178775436 acacaaaaacataaaataacattaaagaatttctttaaaaccTGG----AAGGGcaacctttttat----ttctgaaaatccAGAATCCATCAAGTATTAACATTTTAtcacatacaaattaaaaatttctacATGGC---AAAA--AATAAGGTATCTGAATCTAAAGACATATAACAAATTGGAAGGCAGACATTTGTAATCATATCACAGATAACGAATGAATCTCTCTGTATAGGAAGTT-TTAgatgtgaagaaggaaaagattAACAACAG--AAAAGGATTCAAAGATAAACA------
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135478595 285 + 135778131 ACACAAAAACATAAAATAACATTAAAGAATTTCTGTAAAACCTGGAACTAAAGGCAACCTTTTTAT----TTCTGAAAATCCAGAATCCATCAAGTATTAACATTTTATCACATACAAATTAAAAATTTCTACATGGC---AAAA--AATAAGGTATTTGAATCTAAAGACATAAAACAAATTGGAAGGCAGACATTTGTA---ATATCACAGATAACGAACGAATCTCTCTGTATAGGAAGTC-TTAGATGTGaagaaggaaaagattaacaacag--aaaaggattcaaagataaaca------
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190584059 279 - 190850796 ATACAAAAACATAAAATAACATCGAGAAGTTTCTTTAAGACTAGGAAGTGAGAACAACCTTTTTAT----TCTTGAAAATCCAGAGTCCATAGGGTACTAACATTTTATCACGTACAATTACAAAATTTCTATATGACAAAAAAA--AATCAGATATTTGAGTCTGAAGACATATAACAAGTTGGAGGGCAGACATTTGTAATCACATCACGGATAAAGA------------GTATAGGAAGTT-CTAGAAATGAAGAAGGAAAAAATTAACAATAG--AAAAGGATTCAGAGATAAACA------
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18022455 277 -  59632846 -TTTTAAAGCCTAA--------TAGAGAG------TAAAGCCTAATAGAGAGTAAAGCCTTTCTACCTAGTTCTGAAAAATGAGAATCCATGAAATATTAACAATTTactacacaaacataaaaagtttcta-atggc---aaaaacaataagcaa----aactaaaagacatat---aagttggaaa--aaacatctgtaaccatatcaaagctaaagtgctaatcta-atatatagtaagttcttaaaaactgaaatggaaagatttaacaataagcaaatagatccaaagatataaacagata
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e rheMac3.chr5             183726878 405 + 184069350 I

a score=1362999.000000
s hg38.chr4_KI270925v1_alt    352849 421 +    555799  
s panTro4.chr4             193055489 421 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198145785 421 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113823369 417 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183727283 406 + 184069350  
i rheMac3.chr5             I 405 C 0
s macFas5.chr5             189119416 418 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178538196 422 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135478880 420 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190584338 417 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18022732 507 -  59632846  
i canFam3.chr16            C 0 I 170
e mm10.chr8                 87715729 9203 - 129401213 I

a score=1587165.000000
s hg38.chr4_KI270925v1_alt    353270 506 +    555799  
s panTro4.chr4             193055910 506 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198146206 505 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113823786 509 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183727689 507 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189119834 507 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178538618 507 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135479300 507 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190584755 472 - 190850796  
i calJac3.chr3             C 0 I 12
s canFam3.chr16             18023409 455 -  59632846  
i canFam3.chr16            I 170 C 0
e mm10.chr8                 87715729 9203 - 129401213 I

a score=434030.000000
s hg38.chr4_KI270925v1_alt    353776 176 +    555799 GCTGAGATGCTTTTGCCCCGTTAACCCCCACAGGCTGAACCACTTGGAGAAATTGTCCAGCCTTGCATAGACACAGAAATGGGCTCCT--CTCTTGAAAGCAATTCTGAACCTCAGTGTTAC--ACCGGGCC----------------CAGAACACAAACACGGGGAAGCAGGGAGAGAAGAGGAATAACAATGCC
s panTro4.chr4             193056416 176 + 193495092 GCTGAGATGCTTTTGCCCCCGTAACCCCCACAGGCTGAACCACTTGGAGAAATTGTCCAGCCTTGCATAGACACAGAAATGGGCTCCT--CTCTTGAAAGCAATTCTGAACCTCAGTGTTAC--ACCGGGCC----------------CAGAACACAAACACGGGGAAGCAGGGAGAGAGGAGGAATAACAATGCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198146711 176 + 198332218 GCTGAGATGCTTTTGCCCCCCTAACCCCCACAGGCTGAACCACTTGGAGAAATTGTCCAGCCTTGCATAGACACAGAAATGGGCTCCT--CTCTTGAAAGCAATTCTGAACCTCAGTGTTAC--ACCAGGCC----------------CAGAACACAAACACGGGGAAGCAGGGAGAGAAGAGGAATAACAATGCC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113824295 176 + 115148730 GCTGAGATGCTTTTGCCCCCCTAACCCCTACAGGCTGAATTACTTGGAGAAATTGTCCAGCCTTGCATAGACACCGAAATGGGCTCCT-CCTCTTCAAAGCAATTCTGAACCTCAGTGTTAC--ACCGGGCC----------------CGGAACACAAACAC-GGGAAGCAGGGAGAGAAGAGGAATAACAATGTC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183728196 175 + 184069350 GCTGAAATGCCTTTGCCGCCCCAACCCCCACAGGCTGAACTACGTGGAGAAATTGTCCAGCCTTGCACAGACAACGAAATGGGCTCCT-CCTCTTGAAAGCAATTCTGAACCTCATTATTAC--ACT-GGCC----------------CAGAACACAAACAC-AGGAAGCAGGGAGAGAAGAGGAATAACAATGTC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189120341 175 + 189454096 GCTGAAATGCCTTTGCCGCCCCAACCCCCACAGGCTGAACTACGTGGAGAAATTGTCCAGCCTTGCACAGACACCGAAATGGGCTCCT-CCTCTTGAAAGCAATTCTGAACCTCAGTATTAC--ACT-GGCC----------------CAGAACACAAACAC-GGGAAGCAGGGAGAGAAGAGGAATAACAATGTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178539125 175 + 178775436 GCTGAGATGCCTTTTCCGCCCTAACCCCCACAGGCTGAACTACGTGGAGAAATTGTCCAGCCTTGCACAGACACCGAAATGGGCTCCT-CCTCTTGAAAGCAATTCTGAACCTCAGTGTTAC--ACT-GGCC----------------CAGAACACAAACAC-GGGaagcagggagagaagaggaataaCAATGTC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135479807 190 + 135778131 GCTGAGATGCCTTTTCCGCCCTAACCCCCACAGGCTGAACTACTTGGAGAAATTGTCCAGCCTTGCACA-ACACCGAAATGGGCTCCT-CCTCTTGAAAGCAATTCTGAACCTCAGTATTAC--ACC-GGCCCAGAACACAAACACCTCAGAACACAAACAC-AGGAAGCAGGGCGAGAAGAGGAATAACAATGTC
i chlSab2.chr7             C 0 I 184
s canFam3.chr16             18023864 176 -  59632846 GATGAGTGAGGTTTG--GGTCCAAACTCCACAGGCTGAATCACCTGAAGAACTCATACAGCTTTGTACTAAAACCTAAATGGACTACTACTTCTTGAAAGGAAATGTGAATCTCAGAGTTACATACC-CACC----------------AGGCCGATAGAAAA-GGAAAGCAGGAAGAAGACAGAAACAACACTTTC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e calJac3.chr3             190585227  12 - 190850796 I

a score=383080.000000
s hg38.chr4_KI270925v1_alt    353952 151 +    555799 TCCAAAGACTGGGGTTAACCTAGGCCTTCCCAAGCTGGAGAAGTAGATGAGCACCAGGCTGCCAC--AGCTAGTAG--GGTGCAGGCACTGGCCCCTGAAATTCTCATTCTGTTCCTCCCAAGAAATGTCTGAAGGGAGGTCAATGTCTGCTCAA
s panTro4.chr4             193056592 151 + 193495092 TCCAAAGACTGGGGTTAACCTAGGCCTTTCCAAGCTGGAGAAGTAGATGAGCACCAGGCTGTCAC--AGCTAGTAG--GGTGCAGGCACTGGCCCCTGAAATTCTCATTCTGTTTCTCCCAAGAAATGTCTGAAGGGAGGTCAATGTCTGCTCAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198146887 151 + 198332218 TCCAAAGACTGGGGTTAACCTAGGCCTTCCCAAGCTGGAGAAGTAGATGAGCACCAGGCTGCCAC--AGCTAGTAG--GGTGAAGGCACTGGCCCCTGAAATTCTCATTCTGTTTCTCCCAAGAAATGTCTGAAGGGAGGTCAATGTCTGCTCAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113824471 151 + 115148730 TCCGGAGACTGGGGTTAACCTAGGCCTTCCCAAGCTAGAGAAGTAGATGAGCACCAGGCTGCCAC--AGCTAGTAG--GGTGCAGGCACTGGCCCCTGAAATTCTCATTCTGTTTCTCCCAAGAACTGTCTGAATGGAGGTCAATGTCTGCTCAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183728371 147 + 184069350 TCCAAAAACTGGGGTTAACCTAGGCCTTCCCAAGCTAGAGAAGAAGTTGAGCACCAGGCTGCCAC--AGCTAGTAG--GGCGCAGGCCCTGGCCCGTGAAACTCCCC----ATTTCTCCCAAGAAATGTCTGAAGGGAGGTCAATGTCTGCTCAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189120516 147 + 189454096 TCCAAAAACTGGGGTTAACCTAGGCCTTCCCAAGCTAGAGAAGAAGTTGAGCACCAGGCTGCCAC--AGCTAGTAG--GGCGCAGGCCCTGGCCCGTGAAACTCCCC----GTTTCTCCCAAGAAATGTCTGAAGGGAGGTCAGTGTCTGCTCAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178539300 147 + 178775436 TCCAAAGACGGGGGTTAACCTCGGCCTTCCCAAGCTAGAGAAGAAGTTGAGCACCAGGCTGCCAC--AGCTAGTAG--GGCGCAGGCCCTGGCCCGTGAAACTCCCC----GTTTCTCCCAAGAAATGTCTGAAGGGAGGTCAATGTCTGCTCAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135480181 150 + 135778131 TCCAAAGACTGGGG-TAACCCAGGCCTTCCCAAGCTAGAGGAGAAGCTGAGCACCAGGCTGCCAC--AGCTAGCAG--GGTGCAGGCCCTGGCCCGTGAAACTCTCCTTCTGTTTCTCCCAAGAAATGTCTGAAGGGAGGTCAGTGTCTGCTCAG
i chlSab2.chr7             I 184 C 0
s canFam3.chr16             18024040 154 -  59632846 TTCAAAGCCCAGCATTAACCTAGGCCTTAGCCAGTCAGAGCAATAGCTGAGGGCCAGGGTGCCATGAAGCTAGAGGCAGATACCAACATTGG-CTGTGAAGCCCTCACTCTGCCTCCTCCTAGAAATGTCTAAAAGGAGATAACTATCTGTTCAG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e calJac3.chr3             190585227  12 - 190850796 I

a score=1371265.000000
s hg38.chr4_KI270925v1_alt    354103 420 +    555799 TGATCTTGCCCTTGCGCTCAGAATAAGAAG-------------CTTCTGATTTTTACCCCTTCGAGGCCCCACCTGTAAACAATGTAAACCAATCAGGTATCACAAAACCTGAATGCTACGCCTTATTTTGGGGAAATGAACTTTATTGCTCTTGGTCTACACTCAGCTCTTG---------TAGACAAGTGGGAGCGTGGGAGACACAAAAGGG-TAGAGAAAGAGCCCTGTGCTTACCAGGGAGGCTA------------------CTGTGGTGTTTTGGAGGCTAAGTTCAGGAGTTTATccagcatagaaggcaggggtttaatgcctcttatcaataaATATTT--ACACATATAACCTACATGCATTGAATCTATAATGTGCATACATTTCTTGT-ACCTGAAAATATCTAATATTAAACCAAGGAGAAATATAATTATAGATAATATAATACACATA
s panTro4.chr4             193056743 420 + 193495092 TGATCTTGCCCTTGCACTCAGAATAAGAAG-------------CTTCTGATTTTTACCCCTTCGAGGCCCCACCTGTAAACAATGTAAACCAATCAGGTATCACAAAACCTGAACGCTACGCCTTATTTTGGGGAAATGAACTTTATTGCTCTTGATCTACACTCAGCTCTTG---------TAGACAAGTGGGAGCGTGGGAGACACAAAAGGG-TAGAGAAAGAGCCCTGTGCTTACCAGGGAGGCTA------------------CTGTGGTGTTTCGGAGGCTAAGTTCAGGAGTTTATCCAGCACAGAAGGCAGGGGTTTAATGCCTCTTATCAATAAATATTT--ACACATATAAACTGCATGCATTGAATCTATAATGTGCATACATTTCTTGT-CCCTGAAAATATCTAATATTAAACCAAGGAGAAATATAATTATAGATAATATAGTACACATA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198147038 421 + 198332218 TGATCTTGCCCTTGTGCTCACAATAAGAAG-------------CTTCTGATTTTTACCCCTTCGAGGCCCCACCTGTAAACAATGTGAACCAATCAGGTATCACAAAACCTGAACACTATGCCTTATTTTGGGGAAATGAACTTTATTGTTCTTGATCCACACTCAGCTCTTG---------TAGACAAGTGGGAGCATGGGAGACACAAAAGGGTTAGAGGAAGAGCCCTGTGCTTACCAGGGAGGCTA------------------CTGTGGTGTTTCGGAGGCTAAGTTCAGGAGTTTATCCAGCACAGAAGGCAGGGGTTTAATGCCTCTTATCAATAAATATTT--ACACATATAACCTACATGCGTTGAATCTATAATGTGCGTACATTTCTTGT-ACCTGAAAATATCTAATATTAAACCAAGGAGAAATATAATTATAGATAATATAATACACGCA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113824622 421 + 115148730 TGATCTTGGCCTTGTGCTCAGAATAAGAAG-------------CTTCTGATTTTTACCCCTTCAAGGCCCCACCTGTAAACAATGTAAACCAATCAGGTATCACAAAACCTGAATACTACACCTTATTTCGGGGAAATGAATTTTATTGCTCTTGATCTACACTCAGCTCTTG---------TAGACAAGTGGGAGTGTGGGAGACACAAAAGGGTTAGAGGAAGAGCCCTGTGCTTACCAGGGACGCTA------------------CTGTGGTGTTTCGGAGGCTAAGTTCACGAGTTTATCCAGCACAGAAGGCAGGAGTTTAATGCCTCTTATCAATAAATATTT--ACACATATAACCTACATGCATTGAATCTATAATGTGCATACATTTCTTGT-ACCTGAAAATATCTAATATTAAACCAAGGAGAAATATAATTATAGATAATATAATACAGACA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183728518 421 + 184069350 TGATCTTGCCCTTGCACTCAGAATGAGAAG-------------CTTCTGATTTTTACCTTTTCGAGGCCCCACCTGTAAACAATGTAAACCAATAAGGTATCACAAAACCTGAACACTATGCCTTACTTTGGGGAAAAGAATTTTATTGCTCTTGATCTACACTCAGCTCTTG---------CAGAGAAGTGGGAGCGTGGCAGACACAAAGGGGTTAGAGGAAGAGCCCTGTGCTTACCGGGGAGGCTA------------------CTGTGGGGTTTCGGAGGCCAAGTTCAGGAGTTTATCCAGCACAGAAGGCAGCGGTTTAATGCCTCTTATCAATATATATTT--ACACATATAACCTACATGCATTGAATCTATAATGTGCATACATTTCTTGT-ACTTGGAAATATCTAATATTAAACCAAGGAGAAATATAATTATAGATAATATAATACACACA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189120663 421 + 189454096 TGATCTTGCCCTTGCACTCAGAATGAGAAG-------------CTTCTGATTTTTACCTTTTCGAGGCCCCACCTGTAAACAATGTAAACCAATCAGGTATCACAAAACCTGAACACCATGCCTTACTTTGGGGAAAAGAATTTTATTGCTCTTGATCTACACTCAGCTCTTG---------CAGAGAAGTGGGAGCGTGGCAGACACAAAGGGGTTAGAGGAAGAGCCCTGTGCTTACCGGGGAGGCTA------------------CTGTGGGGTTTCGGAGGCCAAGTTCAGGAGTTTATCCAGCACAGAAGGCAGCGGTTTAATGCCTCTTATCAATATATATTT--ACACATATAACCTACATGCATTGAATCTATAATGTGCATACATTTCTTGT-ACTTGGAAATATCTAATATTAAACCAAGGAGAAATATAATTATAGATAATATAATACACACA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178539447 417 + 178775436 TGATCTTGCCCTTGCACTCAGAATAAGAAG-------------CTTCTGATTTTTACCCTTTCGAGGCCCCATCTGTAAACAATGTAAACCAATCAGGTATCACAAAACCTGAACACCATGCCTTACTTTGGGGAAAAGAATTTTATTGCTCTTGATCTACACTCAGCTCTTG---------CAGAGAAGTGGGAGCGTGGCAGACACAAAGGGGTTAGAGGAAGAGCCCTGTGCTTACCGGGGAGGCTA------------------CTGTGGGGTTTCGGAGGCCAAGTTCAGGAGTTCATCCAGCACAGAAGGCAGCGGTTTAATGCCTCttatcaatatatattt--acacatataacCTAcatgcattgaatctataatgtGCATACATTTCTtgt-acttgaaaa----taatattaaaccaAGGAGAAATATAATTATAGATAATATAATACACACA
i papAnu2.chr5             C 0 I 4
s chlSab2.chr7             135480331 421 + 135778131 TGATCTTGCCCTTGCACTCAGAATAAGAAT-------------CTTCTGATTTTTACCCTTTCGATGCCCCACCTGTAAACAATGTAAACCAATCAGGTACCACAAAACCTGAACACCATGCCTTGCTTTGGGGAAAAGAACTTCATTGCTCTTGATCTACACTCAGCTCTTG---------CAGAGAAGTGGGAGCGTGGCAGACACAAAGGGGTTAGAGGAAGAGCCCTGTGCTTACCGGGGAGGCTA------------------CTGTGGGGTTTCGGAGGCCAAGTTCAGGAGTTTATCCAGCACAGAAGGCAGCGGTTTAATGCCTCTTATCAATAAATATTT--ACACACATAACCTACATGCATTGAATCTATAATATGCATACATTTCTTGT-ACTTGAAAATATCTAATATTAAACCAAGGAGAAATATAATTATAGATAATATAATACACACA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190585239 426 - 190850796 TGATCTTGCCCTTGTGCTCACAATAAGAA--------------CTTCTGATTTTTACCCCTTTGAGGCCACATATGTGAACAATGTAAACCAATCAGGTATCACAAAACCCGACCACTATGCCTTATTTTGGGGAAATGACCTTTATTGCTCTTGATCTACACTCAGCTGTTGATCTATACTCAGAGAAGTGGGAGCGTGGGAGACCCAAGGGGATTAGAGGAAGAGCCTTGTGCTTACCAGGGAGGCTA------------------CTGGGGTGTTTCTGAGACTAAGTTCAGGAGTTTATCCAGCACAGAAGGCTGGGATTTAATG-CTCTTATCAATAAATATTT--ACACATATAACCTACACACACTGAATCTATAATGTGTATACATTTCTCAC-AGCTGAAAATACCTAATATTAAACCAAGGAGAAATGTACTTATAGATAATATAAAACACA--
i calJac3.chr3             I 12 C 0
s canFam3.chr16             18024194 404 -  59632846 ------TGACATGGTGGTTAGAATGAAAAGGAAGACCAAAAACACAATGATTTATA---------------ACCTATAGAAAATGTGAACCTATCA-GTATCACAAAATGAGAACACTATACTTTGTTTTGTGGAAATGGATGTTAGTATCCTTAATCGACACTCA----------------GAAACAAG----------------------AGGTTAGAGAAAGAGCCCCATGATCCCTGAAGGAACTAACTGgtttgtttgtttgtttgtttgtttTCCAAGGGTAAATTCAGGAGTTTATTAGTTACAGAAGACATGAGTTTAATGCTTCCTATCAATAAATATTTGAATATACATAACCATCGTGAATTGAATCTCCAATGAGCATATATTTCTTGTAACTTGAAAAACTCTAACATTAAACCAAGTAGAAATGTAATTATAGATATTACAATACACACA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87715729 9203 - 129401213 I

a score=9677.000000
s hg38.chr4_KI270925v1_alt    354523 5 +    555799 GTTAT
s panTro4.chr4             193057163 5 + 193495092 GTTAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198147459 5 + 198332218 GTTAC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113825043 5 + 115148730 GTTAC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183728939 5 + 184069350 GTTAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189121084 5 + 189454096 GTTAC
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135480752 5 + 135778131 CTTAC
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             18024598 5 -  59632846 GTTAT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e calJac3.chr3             190585665 0 - 190850796 C
e papAnu2.chr5             178539864 4 + 178775436 I

a score=123526.000000
s hg38.chr4_KI270925v1_alt    354528 44 +    555799 AGCATACATTTTAGATGAAGCATTTTTGCATGCTAGGGTAGACA
s panTro4.chr4             193057168 44 + 193495092 AGCATACAGTTTAGATGAAGCATTTTTGCATGCTAGGGTAGACA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198147464 44 + 198332218 AGCATACATTTTAGATGAAGCATTTTTGCATGCTAGGGTAGACA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113825048 43 + 115148730 AGCATACATTGTAGATGAAGCATTTTTGCATGCTAGGGTAGAC-
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183728944 41 + 184069350 AGCATACATTCTAGATGAAGCATTTTTGCATGCTAGGGTAG---
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189121089 41 + 189454096 AGCATACATTCTAGATGAAGCATTTTTGCATGCTAGGGTAG---
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178539868 44 + 178775436 AGCATACATTCTAGATGAAGCATTTTTGCATGCTAGGGTAGACA
i papAnu2.chr5             I 4 T 48
s chlSab2.chr7             135480757 44 + 135778131 AGCATACATTCTAGATGAAGCATTTTTGCATGCTAGGGTAGACA
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             18024603 44 -  59632846 AGCTTAAATTTTAAATGGAGCGTTTTTGCATGCTAGGGTAGACA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e calJac3.chr3             190585665  0 - 190850796 C

a score=2328.000000
s hg38.chr4_KI270925v1_alt    354572 10 +    555799 ATACACACAG
s panTro4.chr4             193057212 10 + 193495092 ATACACACAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198147508 10 + 198332218 ATACACACAG
i ponAbe2.chr4             C 0 C 0
s calJac3.chr3             190585665  1 - 190850796 ---------G
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87715729 9203 - 129401213 I
e canFam3.chr16             18024647  0 -  59632846 C
e chlSab2.chr7             135480801  0 + 135778131 C
e papAnu2.chr5             178539912 48 + 178775436 T
e macFas5.chr5             189121130  0 + 189454096 C
e rheMac3.chr5             183728985  0 + 184069350 C
e nomLeu3.chr7b            113825091  0 + 115148730 C

a score=1129782.000000
s hg38.chr4_KI270925v1_alt    354582 416 +    555799 TTACAGCATACATCGTAGATGAAGCATTTTTGTATGCTAGGGTAAACACAAAACCTGTTTGCTATGAAGGCCCTGGCAGTCTGTACATCTAGCCAATCATTTGCATACTATTAAATAACACGTTTGCAGTAAAACTAGAAGGCAATAAAGCTGTATCCATGTGTTCTCTAACCTATTTGATCAATGCTGCCATAAGAGCTTCAGAGATTGAATATT----TGTGTGGCTCT-CAATTTTGCTCACAATTTACGTAAATTAGAAGCTTAAATGTAGGATATTGGTAATAATTTAT-GTGATCTAACAAACAACTCTCTAAAGTCTTTGGAATATAAGGTCTCTGGATAGCCAAAACTTCTAATTAATTGAGGATTACAACTTT-------AATCAACAATA-ATTTTTTTTAATAATTTAAATATTTTGGG
s panTro4.chr4             193057222 416 + 193495092 TTACAGCATACATCGTAGATGAAGCATTTTTGTATGCTAGGGTAAACACAAAACCTGTTTGCTGTGAAGGCCCTGGCGGTCTGTACATCTAGCCAATCATTTGCATACTATTAAATAACACGTTTGCAGTAAAACTAGAAGGCAATAAAGCTGTATTCATGTGTTCTCTAACCTATTTGATCAATGCTGCCATAAGAGCTTCAGAGATTGAATATT----TGTGTGGCTCT-CAATTTTGCTCACAATTTACGTAAATTAGAAGTTTAAATGTAGGATAATGGTAATAATTTAT-GTCATCTAACAAACAACTCTCTAAAGTCTTTGGAATATAAGGTCTCTGGATAGCCAAAACTTCTAATTAATTGAGGATTACAACTTT-------AATCAACaata-atttgttttaataatttaaatattttGGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198147518 416 + 198332218 TTACAGCATACATCGTAGACAAAGCATTTTTGTATGCTAGGGTAGATACAAAACCTGTTTGCCACGAAGGCCCTGGCGGTCTGTACATCTATCCAATCATTTGCATACTATTAAATAACACTTTTGCAGTAAAACTAGAAGGCAATAAAGCTGTATCCATGTGTTTTCTAACCTATTTGATCAATGCTGCCATAAGAGCTTCAGAGATTGAATATT----TGTGTGTCTCT-CAATTTTGCTCACAATTTACATAAATTAGAAGTTTAAATGTAGGATAATGGTAATAATTTAT-GTCATCTAACAAACAACTCTCTAAAGTCTTTGGAATATAAGGTCTCTGGATAGCCAAAACTTCTAATTAATTGAGGATTACAACTTT-------AATCAACaata-attttttttaataatttaaatattttGGG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113825091 373 + 115148730 -----------------------------------------------ACAAAACCTGTTTGCTATGAAGGCCCTGGCAGTCTGTACATCTATCCAATCATTTACATACTATTAAA-AACAC--TTGCAGTAAAACTAGAAGGCAATAAAGCTGTATCCACGTGTTTTCTAACCTATTTGATCAATGCTGCCATAAGAGCTTCAGAGATTGAATATT----TGCGTGGCTCT-CAATTTTGCTCACAATTTGCGTAAATTGGAAGTTTAAATGTAGGATAATGGTAATACTTTAT-GTTATGTAACAAACAACTCCCTAAAGTCTTTGGAATATAAGGTCTCTGGATAGCCAAAACTTCTAATTAATTGAGGGTTACAACTTTAATCAACAATCAACAATA-ATTTTTTTAAATAATTTAAATATTTTGGG
i nomLeu3.chr7b            C 0 I 275
s rheMac3.chr5             183728985 354 + 184069350 ---------------------------------------------ACACAAAACCTGTTTGCTATGA-GGCCCTGGCAGTCTGTGCATCTATCCAGTCATTTGCATACTGTTAAATAACACTTTTGCAGTAAAACTAGAAGGCAATAAAGCTGTATCCATGTGTTTTCTAACCTATTTGACCGATGCTGCCATAAGAACTTCAGAGACTGAATATT----TGTGTGGCTCT-------------CAATTTACATAAATTAGAAGTTTAAACATAGGATAATGGTAATAATTTAT-GTCATCT----AACAACTATCTAAAGTCTTTGGAATATAAGATCTCTGGATAGCCAAAACTTCTAATTAATTGAGGATTACAACttt-------aattaacaata-atttttttaaataatttaaatattttGGG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189121130 354 + 189454096 ---------------------------------------------ACACAAAACCTGTTTGCTATGA-GGCCCTGGCAGTCTGTGCATCTATCCAGTCATTTGCATACTGTTAAATAACACTTTTGCAGTAAAACTAGAAGGCAATAAAGCTGTATCCATGTGTTTTCTAACCTATTTGACCGATGCTGCCATAAGAACTTCAGAGACTGAATATT----TGTGTGGCTCT-------------CAATTTACATAAATTAGAAGTTTAAACATAGGATAATGGTAATAATTTAT-GTCATCT----AACAACTATCTAAAGTCTTTGGAATATAAGATCTCTGGATAGCCAAAACTTCTAATTAATTGAGGATTACAACTTT-------AATTAACAATA-ATTTTTTTAAATAATTTAAATATTTTGGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178539864 399 + 178775436 TTACAGCATACATTCTAGATGAAGCATTTTTGCATGCTAGGGTAGACACAAAACCTGTTTGCTATGA-GGCCCTGGCAGTCTGTGCATCTATCCAGTCATTTGCAGACTGTTAAATAATACTTTTGCAGTAAAACTAGAAGGCAATAAAGCTGTATCCATGTGTTTTCTAACCTATTTGACCAATGCTGCCATAAGAGCTTCagagactgaatatt----tgtgtggCTCT-------------CAATTTACATAAATTAGAAGTTTAAACGTAGGATAATGGTAATAATTTAT-GTCATCT----AACAACTATCTAAAGTCTTTGGAATATAAGATCTCTGGATAGCCAAAACTTCtaattaattgaggattacaacttt-------aattaacaata-attttttaaaataatttaaatattttggg
i papAnu2.chr5             T 48 C 0
s chlSab2.chr7             135480801 351 + 135778131 ------------------------------------------------CAaaa-ctgtttgctatgagggccctggcagtctgtacatctatccaatcatttgcatactgttaaataacacttttgcaGTAAAACTAGAAGGCAATAAAGCTGTATCCATGTGTTTTCTAACCTATTTGATCGATGCTGCCATAAGAGCTTCAGAGACTGAGTATT----TGTGTGGCTCT-------------CAATTTACATAAATTAGAAGCTTAAACATAGGATAATGGTAATTATTTAT-GTCATCT----AACAACTATCTAAAGTCTTTGGACTATAAGATCTCTGGATAGCCAAAACTTCTAATTAATTGAGGATTACAACTTT-------AATTAACAATA-ATTTTTAAAAATAATTTAAATATTTTGGG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190585666 417 - 190850796 TTACAGAATACCTTTTAGATGAAGCA-TTTGGCACACTAGGGTAGACACGAAACC-GTTTGCTATGAAGGCCCTGGAAATCTGTGCATATATTCAATCATTTGCATACTACTAAATAACACTTTTGCAACAAAACTGGAAGGCAATAAAGCTGTA-CCATGTGTTTTCTAACCTACTTGATCCATGCTGCCGTAAGAGCTTTAGGGATTGAATATTTCC-TGTGTGGCTCC-CAATTTTGCTTACAATTTACATAAATTAGAAGTTTAAATGTAGGATAATGATAATAATTTAC-ATCATCTAACAAGCAACTGTTTAAAGTCTTTGGAATATAAGATCTCTGGATAGCCAAAACTCCTAATTAATTGAGGATTACGACTTT-------AATCAACAATACATTTCTTTAAATCATTTAAATATTTTGGG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18024647 316 -  59632846 ------------------------------------------------CAGAAGCTGTTTGCTACTGAGGCCCTGGAGA----GACATCTATGAAATCACTTCCATAATATTAAATGATACTTTTCTAGTGAAACTAGAAAATATTAAACCTATATCCATGTGTTTCCCAATCTATTTGATCAATGTTGCCATGAGAGATTCAGAGATTGAATATTTCCATGTGTGGCTCTTCCATTTTATTCATAGTACATATAAATTAGAAGTTTAAATGTAG------AGTAAAAATTTATAGAAAACT------CAATTCCCTGAAGTCTTTGGAATAGGAGAATTCTAGGCAGCCAAAAATTCTAAATAATTGAG-----------T-------TATTCATAA--------------------------------
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87715729 9203 - 129401213 I

a score=1565592.000000
s hg38.chr4_KI270925v1_alt    354998 521 +    555799  
s panTro4.chr4             193057638 521 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198147934 521 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113825739 520 + 115148730  
i nomLeu3.chr7b            I 275 C 0
s rheMac3.chr5             183729339 521 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189121484 521 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178540263 525 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135481152 525 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190586083 480 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18024963 422 -  59632846  
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87715729 9203 - 129401213 I

a score=4250278.000000
s hg38.chr4_KI270925v1_alt    355519 1210 +    555799  
s panTro4.chr4             193058159 1208 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198148455 1212 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113826259 1224 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183729860 1222 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189122005 1190 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178540788 1191 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135481677 1208 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190586563 1206 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87724932 1163 - 129401213  
i mm10.chr8                I 9203 I 875
s canFam3.chr16             18025385 1213 -  59632846  
i canFam3.chr16            C 0 C 0

a score=307214.000000
s hg38.chr4_KI270925v1_alt    356729 89 +    555799 CTGGAATTATA-------CACTGCAAGGTATTGTGCATCAA-TTTCCCATGTGTCAGAGAAAGGAACAGTTTAGCCTTGACACCAAGAG-----GTCTG--CAC
s panTro4.chr4             193059367 89 + 193495092 CTGGAATTATA-------CACTGCAAGGTATTGTGCATCAA-TTTCCTATGTGTCAGAGAAAGGAACAGTTTAGCCTTGACACCAAGAG-----GTCTG--CAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198149667 89 + 198332218 CTGGAATTATA-------CACTGCAAGGTATTGTGCATCAA-TTTCCTATGTGTCAGAGAAAGGAACAGTTTAGCCTTGACACCAAGAG-----GTCTG--CAC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113827483 89 + 115148730 CTGGAATTATA-------CGCTGCAAGGTATTGTGCCTCCA-TTTCCTATGTGTTAGAGAAAGGAACAGTTTAGCCTTGACACCAGGAG-----GTCTG--CAC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183731082 89 + 184069350 CTGGAATTACA-------CACTGCAAGGTATTGTGCATCGA-TTTCCTATGTGTCAGAGAAAGGAACAGTTTAGCCTTGACACCAAGAG-----GTCTG--CAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189123195 89 + 189454096 CTGGAATTACA-------CCCTGCAAGGTATTGTGCATCGA-TTTCCTCTGTGTCAGAGAAAGGAACAGTTTAGCCTTGACACCAAGAG-----GTCTG--CAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178541979 89 + 178775436 CTGGAATTACA-------CACTGCAAGGTATTGTGTATCGA-TTTCCTATGTGTCAGAGAAAGGAACAGTTTAGCCTTGACACCAAGAG-----GTCTG--CAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135482885 89 + 135778131 CTGGAATTACA-------CACTGCAAGGTATTGTGCATCGA-TTTCCTATGTGTCAGAGAAAGGAACAGTTTAGCCTTGACACCAAGAG-----GTCTG--CAC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190587769 99 - 190850796 CCGGAACGACAGCTATTCCACGGCAAGTTACTGTGCATCAGTTTTCCTATGTGTCCAGAGAAAGAACAGCTTGGCCTTGACACCAACAG-----ATCTGCACAC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87726970 95 - 129401213 ctGGGGATAGA-------CACTCAGAATTTTTTTCCATAAATTTTCCAGTGTCTTGGAGGAGAAAACAATTTAACCTTGACACGGAAATTCTTCATCTG--CAC
i mm10.chr8                I 875 C 0
s canFam3.chr16             18026598 95 -  59632846 CTGGAAGGATAGTTATTACACCAGAAGTTTTTATGCATCAATTTTCCTATGTGTTAGAGAAGGGAATGGTTTAACTTTA--ACCAAGAG-----CTCCA--TCC
i canFam3.chr16            C 0 C 0

a score=82139.000000
s hg38.chr4_KI270925v1_alt    356818 22 +    555799 ACACAAATACCTAAAAGTAACC
s panTro4.chr4             193059456 22 + 193495092 ACACAAATACCTAAAAGTAACC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198149756 22 + 198332218 ACACAAATACCTAAAAGTAACC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113827572 22 + 115148730 ACACAAATAACTAAAAGTAACC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183731171 22 + 184069350 ACACAAATACCTAAAAGTAACC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189123284 22 + 189454096 ACACAAATACCTAAAAGTAACC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178542068 22 + 178775436 ACACAAATACCTAAAAGTAACC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135482974 22 + 135778131 ACACAAATACCTAAAAGTAACC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190587868 22 - 190850796 ACACACATACCTAAAGGTAACC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18026693 22 -  59632846 ATACCAATGCCTAAATGTAACC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87727065  0 - 129401213 C

a score=1111843.000000
s hg38.chr4_KI270925v1_alt    356840 402 +    555799 TAAAAgtctattcatgtccttagcccactttttgatgggattatttgttt----cttgctaatttgtttgagtccattgtagattctggatatcagtcctttgtcagatgtatagattgtgaagattttctcccactctgtgtgttgtctgtttactctgctgactgttccttttgctgtgcaaaagctctttagtttgattaggtcccagctatttatttttgttcttattgcgtttgct--tatgggttcttgttcgtgaaatccttgcctaagccaatgtctagaagagtttttccaatgttgtcttttagaatttttatagtt-----------tctt----------------gtcttggatttaagtccttcatccatcttgagtACCACTTGTTCCCCAATAACCTATGGAAATACAAATATTAAAAA
s panTro4.chr4             193059478 388 + 193495092 TAAAAgtctattcatgtccttagcccacttttggatgggattatttgtttgtttcttgctaatttgtttgagtccattgtagattctggatatcagtcct------------------gtgaagattttctcccactctgtgtgttgtctgtttactctgctgactgttccttttgctgtgcaaaagctctttagtttgattaggtcccagctatttatttttgttcttattgcatttgct--tatgggttcttgttcatgaaatccttgcctaagccaatgtctagaagagtttttccaatgttgtcttttagaatttttatagtt-----------tctt----------------gtcttggatttaagtccttcatccatcttgagtACCACTTGTTCCCCAATAACCTATGGAAATACAAATATTAAAAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198149778 406 + 198332218 TAAAAgtctattcatgtccttagcccactttttgatgggattatttgtttgtttcttgctaatttgtttgagtccattgtagattctggatatcagtcctttgtcagatgtatagattgtgaagattttctcccactctgtgggttgtctgtttactctgctgactgttccttttgctgtgcaaaagctctttagtttaattaggtcccagctatttatttttgttcttattgcatttgct--tatgggttcttgttcatgaaatccttgcctaagccaatgtctagaagaatttttccaaggttgtcttttagaatttttatagtt-----------tctt----------------gtcttggatttaagtccttcttccatcttcagtACCACTTGTTCCCCAATAACCTATGGAAATACAAATATTAAAAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113827594 408 + 115148730 TAAAAgtctattcatattcttagcccactttttgatgggattgtttgtttgcttcttactaatttgtttgagttcattgtagattctggatattagtcctttgtcagatgtatagattgtgaagattttctcccactctgtgggttgtttgtttaccctgctgactgttccttttgctgtgcaaaagctctttagtttaattaggtcccagctatttatttttgttcttattgcatttgcttatatgggttcttgttcatgaaatccttgcctaagccaatgtctagaagagtttttccaatgttgtctgttagaattttcatagtt-----------tctt----------------gtcttggatttaagtcattcatctatcttgagtaccgcctgttccccaataacctatggaaataaaaaCATTATAAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183731193 405 + 184069350 TAAAAgtctattcatgtcctcagcccactttt-gatgggattgtttgtttgtttcttgctaatttgtttgagttcattgtagattctggatattagtccttgatcagatgtatagattgtgaagattttctcccactctatgggttgtctgattactctgctaactattccttctgtcgtgcaaaagttctttagtttaattaggtcccagctatttatctttgtttttattgcatttgct--tttgggttcttgttcatgaaatccttgcctaagccaatgtctagaagggtttttctgatgttttcttttagaatttttatagtt-----------tctt----------------gtcttagatttaagtccttcatccatcttgagtACCAATTGTTCCTCAATAACCTATGGAAATAAAAACTTAAAAAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189123306 405 + 189454096 TAAAAgtctattcatgtcctcagcccactttt-gatgggattgtttgtttgtttcttgctaatttgtttgagttcattgtagattctggatattagtccttgatcagatgtatagattgtgaagattttctcccactctatgggttgtctgattactctgctaactattccttctgtcgtgcaaaagttctttagtttaattaggtcccagctatttatctttgtttttattgcatttgct--tttgggttcttgttcatgaaatccttgcctaagccaatgtctagaagggtttttctgatgttttcttttagaatttttatagtt-----------tctt----------------gtcttagatttaagtccttcatccatcttgagtACCAATTGTTCCTCAATAACCTATGGaaataaaaacttaaaaaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178542090 405 + 178775436 TAAAAGTCTATTCATGTCCTCagcccactttt-gatgggattgtttgtttgtttcttgctaatttgtttgagttcattgtagattctggatattagtcctttatcagatgtatagattgtaaagattttctcccactctatgggttgtctgaTTACTCTGCTAACTATTCCTTCTGTCgtgcaaaagttctttagtttaattaggtcccagctatttatctttgtttttattgcatttgtt--tttgggttcttgttcatgaaatccttgcctaagccaatgtctagaagggtttttctgatgttttcttttagaatttttatagtt-----------tctt----------------gtcttagatttaagtccttcaTCCATCTTGAGTACCACTTGTTCctcaataacctatggaaataaaaacttaaaaaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135482996 401 + 135778131 TAAAAgtctattcatgtcctcagcccacttct-gatggga----ttgtttgtttcttgctaatttgtttgagttcattgtagattctggatattagtcctttatcagatgtatagattgtgaagattttctcccactctatgggttgtctgattactctgctaactattccttctgtcgtgcaaaagttctttagtttcattaggttccagctatttatctttgtttttatcgcatttgct--tttgggttcttgttcatgaaatccttgcctaagccaatgtctagaagggtttttctgatgttttcttttagaatttttatagtt-----------tctt----------------gtcttagatttaagtccttcatccatcttgagtACCACTTGTTCCTCAATAACCTATGGaaataaaaactttaaaaa
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190587890 414 - 190850796 T-AAAgtctattcatgcccttagcccactttttcagggga----ttgtttgtttcttgctcactagtttgatttcgttgtagagtctggatattagtcctttgtcagatgtatggactgtgaagactttctcccactctgtgagttg--tgattcctctgctgactgtt-cttttaccatgc-aaagctctttagtttaattaagtgccagctctttacctttgcttttattgc------t--tttgggttcttgtttatgaaatccttgcctaagccaatgtctggaatggtttttccaatgtcatcttctagaatttttatagtttagatttatagtcttagatttaatttttatagtcttagatttaagaccttgatgcatcttgagCACCACTTCTTCCCCAATAACCAGTGAAAAAAAAATT----AAAA
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87727065   0 - 129401213 C
e canFam3.chr16             18026715   0 -  59632846 C

a score=72356.000000
s hg38.chr4_KI270925v1_alt    357242 19 +    555799 ATACAAAA--------TAAAAGTTACT
s panTro4.chr4             193059866 27 + 193495092 ATACAAAAATACAAAATAAAAGTCACT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198150184 26 + 198332218 ATACAAAAATACAAAAT-AAAGTAACT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113828002 27 + 115148730 ATACAAAAATACAAAATAAAAGTAACT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183731598 27 + 184069350 ATACAAAAATACAAAATAAAAGTAACT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189123711 27 + 189454096 atacaaaaatacaaaataaaagtaaCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178542495 27 + 178775436 atacaaaaatacaaaataaaagtaact
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135483397 27 + 135778131 atacaaaaatacaaaataaaagtaaCT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190588304 26 - 190850796 ATACAAAAACACAAA-TAAAAGTAACT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87727065 22 - 129401213 ACACAAAAGCA-----AAAAACTAACT
i mm10.chr8                C 0 C 0
e canFam3.chr16             18026715  0 -  59632846 C

a score=1294666.000000
s hg38.chr4_KI270925v1_alt    357261 359 +    555799 TAGCACTCAATTGCAGTATGTCTGAACCTCTTGGAAAGATG---GATGCCTTTCAACTATTAAAATTATTTTTTAACTATATATCTGAA----AAGCATTATTAATAAAGATT-CGTGAACTTAGCAGTTATAGTTCCAGAGAAAGAGTGCCAGGTGTACAGCTCTTAGAATGTAAGCTATTAAGATGCAGAGATTGTATCTGTGCAAATCACTTTGTTCAACACCA------------GCGAGAAGTGAAATATTTACAAATATTTTTTTGATGACAATGACAAGGAATCAGGACCCTTGATTAGAAGAGATGGATATCCAAGTCAAACCAGCTATCTTA-GAAAAGAAATTGGGAGCTCCCCTTACCAAATGTTGAG--A
s panTro4.chr4             193059893 369 + 193495092 TAGCACTCAATTGCAGTATGTCTAAACCTCTTGGAAAGATG---GATGCCTTTCAACTATTAAAATTATTTTTTAACTATATATCTGAA----AAGTATTATTAATAAAGATT-CTTGAATGTAGCAGTTATAGTTCCAGAGAAAGAGTGCCAGGTGTACAGCTCTTAGAATGTAAGCTATTAAGATGCAGAGATTGTATCTGTGCAAATCACTCTGTTCAACACCAAAAG-CATGTCAGCAAGAAGTGAAATATTTACAAAT-TTTTTTTGATGACAATGACAAGGAATCAGGACCCTTGATTGGAAGAGATGGATATCCAAGTCAAACCAGCTATCTTA-GAAAAGAAATTGGGAGCTCCCCTTACCAAATGTTGAG--A
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198150210 370 + 198332218 TAGCACTCAATTGCAGTATGTCTGAACCTCTTGGAAAGATG---GATGCCTTTCAACTATTAAAATTATTTTTTAACTATATATCTGAA----AAGTAGTATTAATAAAGATT-CTTGAACTTAGCAGTTATAGTTCCAGAGAAAGAGTGCCAGGTGTACAGCTCTTAGAATGTAAGCTATTAAGATGCAGAGATTGTATCTATGCAAATCACTTTGTTCAACACCAAAAG-CATGTCAGCGAGAAGTGAAATATTTACAAATACTTTTTTGATGAAAATGACAAGGAATCAGGACCCTTGATTAGAAGAGATGGATATCCAAATCAAACCAGCTATCTTA-GAAAAGAAATTGGGAGCTCCCCTTACCAAATGTTGAG--A
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113828029 369 + 115148730 TAGCACTCAATTGCAGTAT-TCTGAACCTCTTGGAAAAATG---GATGCCTTTCAACTATTAAAATTATTTTTTAACTATATATCTGAA----AAGTATTCTTAATAAAGATT-CTTGAACTTAGCAGTTATAGTTCCAGAGAAAGAGTGCCAGGTGTACAGCTCTTAGAATGTAAGCTATTAAGATGCAGAGATTGTATCTGTGCAAATCACTTTGTTCAACACCAAAAG-CACGTCAGCGAGAAGTGAAATATTTACAAATACTTTTTTGATGAAAATGACAAGGAATCAGGACCCTTGATTAGAAGAGATGGATATCCAAGTCGAACCAGCTATCTTA-GAAAAGAAATTGGGAGCTCTCCTTACCAAATGTTGAG--A
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183731625 370 + 184069350 TAGCATTCAATTGCAGTATGTCTGAACTTCTTGGAAAGATG---AATGCCTTTCaattattaaaattaatttttaattatatatCTGAA----AAGTATTATTAATAAAGATTCCTTGAACTTAGCAGTTATAGTTCCAGAGAAAGACTGCCAGGTGTACAGCTCTTAGAATGTAAGCCACTAAGATGCAGAGACTGTATCTGTGCAAATCACTTTGTTCAATATCAAAAG-CATGTCAGCAAGAAGTGAAATATTTACAAATACTTTTTTGATGAAAACGACAAGGAATCAGGACCCTCGATTAGAAGAGATGAATATCTAAGTCGAACCAGCTATCTTA-GAAAAGAACTTGGGAGCACCCCTTACCAAATGTTGGG---
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189123738 371 + 189454096 TAGCATTCAATTGCAGTATGTCTGAACTTCTTGGAAAGATG---AATGCCTTTCAATTATTAAAATTAATTTTTAATTATATATCTGAA----AAGTATTATTAATAAAGATTCCTTGAACTTAGCAGTTATAGTTCCAGAGAAAGACTGCCAGGTGTACAGCTCTTAGAATGTAAGCCACTAAGATGCAGAGACTGTATCTGTGCAAATCACTTTGTTCAATATCAAAAG-CATGTCAGCAAGAAGTGAAATATTTACAAATACTTTTTTGATGAAAACGACAAGGAATCAGGACCCTCGATTAGAAGAGATGAATATCTAAGTCGAACCAGCTATCTTA-GAAAAGAACTTGGGAGCACCCCTTACCAAATGTTGGGA--
i macFas5.chr5             C 0 I 3
s papAnu2.chr5             178542522 370 + 178775436 taGCATTCAATTGCAGTATGTCTGAACTTCTTGGAAAGATG---AATGCCtttcaattattaaaattaatttttaattatatatctgAA----AAGTATTATTAATAAAGATTCCTTGAACTTAGCAGTTATAGTTCCAGAGAAAGACTGCCAGGTGTACAGCTCTTAGAATGTAAGCCACTAAGATGCAGAGACTGTATCTGTGCAAATCACTTTGTTCAATATCAAAAG-CATATCAGCAAGaagtgaaatatttacaaatacttttttgATGAAAACGACAAGGAATCAGGACCCTCGATTAGAAGAGATGGATATCTAAGTCGAACCAGCTATCTTA-GAAAAGAACTTGGGAGCACCCCTTACCAAATGTTGGG---
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135483424 371 + 135778131 TAGCACTCGATTGCAGTATGTCTGAACTTCTTGGAAAGATG---AATGCCTTTCAATTATTAAGATTAATTTTTAATTATATATCTAAA----AAGTATTATTAATAAAGATTCCTTGAACTTAGCAGTTATAGTTCCAGAGAAAGACTGCCAGGTGCACAGCTCTTAGAATGTAAGCCACTAAGATGCAGAGACTGTATCTGTGCAAATCACTTTGTTCAATATCAAAAG-CATGTCAGCAAGAAGTGAAATATTTACAAATACTTTTTTGATGAAAATGACAAGGAATCAGGACCCTTGATTAGAAGACATGGATATTTAAGTCGAACCAGCTATCTTA-GAAAAGAACTTGGGAGCGCCCCTTACCAAATGTTGGG-A-
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190588330 369 - 190850796 CAGCACGCAATTGCA--CTGTCTGAACTTCTTTGAAGAATG---AATGCCTTTCAACTATTAAAATTAATTTTTAACTATATATCCAAAGATTGAGTATTAATAATAAAGAGTCATTGAACTGAGCAGTTACAGTTCCAGAGAAAGAGTGCCAGGTGTACATCTCTTAGAATATAAGCTACTAAGATGCAGAGAC----TCTGTGTGAATCACTTCGTTCAACACCGAAAG-CATGTCAATGAGAAGGGAAATACTCCCAAATACTTTTTTAGTGAAGATGACAAGGACTCAGGGCCCTTGATTGGAAAAGATGGATATCCAGGGTGAACCAGGTATCTTA-GAAAAGAAATTAGGAGCGCCTCTTACTAAATGTTGGG--A
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87727087 336 - 129401213 TAGCAGTCAGTTGGAGTAGGTTTCAACTGCTTGGGAAGATA---GACAACATTCAGCTATTAATGTTAATTTTTAATTATATACATGAA----AAGTG--GTTATTAAAGATTCATTATGTTTAGCTGTTACTCTGTTAGGGAACAATAGCCAACTG-ACAGCTCTCAGGATATAAACCACTTAAATGCAGAGACTAGATCTCTGTAAAT-------------GCCACAATCCATGTCAATAAGTAATGAAGC-----------TCTTGTCAATGGAGATGATAAGAATTTAGGATTCTTGGTAGAAAGAG--------CCAATTTAAACTAATCATCTCA--AAGACAACTGGGTAGCTCCTTCAACCAAATTTTAGA--A
i mm10.chr8                C 0 I 1
s canFam3.chr16             18026715 354 -  59632846 TAGCACTCCATTGGAGTAGGTCTGAATCTCCTGGAAAGATGGATGATGACTTTCAACTATTAA------TTTTTAAC-ACGTACCCCAA----AAGTG--AACATTAAAGATTCATTGAGATTAGCAGTCCT--------AGAGAGAGTGCCAGACTTACAGCTCTTAGAATGCAAACCATTAAAATACAGAGACTGTATCTACATAAATCACTTTGT----CACCAAAAA-TATGTCCACGAGTAACAAAGTATTTACCAATATTTTTTTGATGAAGATGCTAAGGAATCAGAACTCTTGACTGGAAGAGATATTTACCCAACCCAAACCAGCCATCTCAAGAAAAGTAACTGGCAGCTTCCCTAACCAAACTTCAGG--A
i canFam3.chr16            C 0 C 0

a score=4965.000000
s hg38.chr4_KI270925v1_alt    357620 4 +    555799 AGAG
s panTro4.chr4             193060262 4 + 193495092 AGAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198150580 4 + 198332218 AGAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113828398 4 + 115148730 AGAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183731995 4 + 184069350 AGAA
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178542892 4 + 178775436 AGAA
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190588699 4 - 190850796 AGAG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87727424 3 - 129401213 AGA-
i mm10.chr8                I 1 C 0
s canFam3.chr16             18027069 4 -  59632846 TGAT
i canFam3.chr16            C 0 C 0
e chlSab2.chr7             135483795 0 + 135778131 C
e macFas5.chr5             189124109 3 + 189454096 I

a score=65043.000000
s hg38.chr4_KI270925v1_alt    357624 38 +    555799 CAGAAGTAGAGCTGGGCCTCAAGCTAGTGCCAACATCT
s panTro4.chr4             193060266 38 + 193495092 CAGAAGCAGAGCTGGGCCTCAAGCTAGTGCCAACATCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198150584 38 + 198332218 CAGAAGCAGAGCTGGGCCTCAAGCTAGCGCCAACATCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113828402 11 + 115148730 CAGAAGCAGAG---------------------------
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183731999 31 + 184069350 CAGAAGCACAGCTGGGCCTTGAGCTAGCGCC-------
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189124112 38 + 189454096 CAGAAGCACAGCTGGGCCTTGAGCTAGCGCCAGCATCT
i macFas5.chr5             I 3 C 0
s papAnu2.chr5             178542896 38 + 178775436 CAGAAGCACAGCTGGGCCTCGAGCTAGCGCCAGCATCT
i papAnu2.chr5             C 0 T 49
s calJac3.chr3             190588703 37 - 190850796 CAGAAGCAAAGCCAGACCTCAAGCTAACGCCAGCATC-
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87727427 38 - 129401213 CATTGGCAAAGCTGGACCTCGGGCTAGCCCCAGGGCCT
i mm10.chr8                C 0 C 0
s canFam3.chr16             18027073 23 -  59632846 TGTGGGCAAAGCTGGACCTCAAG---------------
i canFam3.chr16            C 0 C 0
e chlSab2.chr7             135483795  0 + 135778131 C

a score=6886.000000
s hg38.chr4_KI270925v1_alt    357662 10 +    555799 GAAAAGGGGC
s panTro4.chr4             193060304 10 + 193495092 GAAAAGGGGC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198150622 10 + 198332218 GAAAAGGGGC
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189124150 10 + 189454096 GAAAAGGGGC
i macFas5.chr5             C 0 T 51
s calJac3.chr3             190588740  1 - 190850796 ---------C
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87727465 10 - 129401213 GAAATGAAGC
i mm10.chr8                C 0 C 0
e canFam3.chr16             18027096  0 -  59632846 C
e chlSab2.chr7             135483795  0 + 135778131 C
e papAnu2.chr5             178542934 49 + 178775436 T
e rheMac3.chr5             183732030  0 + 184069350 C
e nomLeu3.chr7b            113828413  0 + 115148730 C

a score=755.000000
s hg38.chr4_KI270925v1_alt    357672 1 +    555799 T
s panTro4.chr4             193060314 1 + 193495092 T
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198150632 1 + 198332218 T
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178542885 1 + 178775436 T
i papAnu2.chr5             T 49 C 0
s calJac3.chr3             190588741 1 - 190850796 T
i calJac3.chr3             C 0 T 50
s mm10.chr8                 87727475 1 - 129401213 C
i mm10.chr8                C 0 C 0
e canFam3.chr16             18027096 0 -  59632846 C
e chlSab2.chr7             135483795 0 + 135778131 C
e macFas5.chr5             189124160 51 + 189454096 T
e rheMac3.chr5             183732030 0 + 184069350 C
e nomLeu3.chr7b            113828413 0 + 115148730 C

a score=2865.000000
s hg38.chr4_KI270925v1_alt    357673 2 +    555799 GT
s panTro4.chr4             193060315 2 + 193495092 GT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198150633 2 + 198332218 GT
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178542886 2 + 178775436 GT
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190588692 2 - 190850796 GT
i calJac3.chr3             T 50 C 0
s mm10.chr8                 87727476 2 - 129401213 GT
i mm10.chr8                C 0 I 1051
e canFam3.chr16             18027096 0 -  59632846 C
e chlSab2.chr7             135483795 0 + 135778131 C
e macFas5.chr5             189124160 51 + 189454096 T
e rheMac3.chr5             183732030 0 + 184069350 C
e nomLeu3.chr7b            113828413 0 + 115148730 C

a score=5990.000000
s hg38.chr4_KI270925v1_alt    357675 6 +    555799 TGGGAA
s panTro4.chr4             193060317 6 + 193495092 TGGGAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198150635 6 + 198332218 TGGGAA
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178542888 5 + 178775436 TGGGA-
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190588694 6 - 190850796 TGGGAA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18027096 6 -  59632846 TGGGAA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87727478 1051 - 129401213 I
e chlSab2.chr7             135483795 0 + 135778131 C
e macFas5.chr5             189124160 51 + 189454096 T
e rheMac3.chr5             183732030 0 + 184069350 C
e nomLeu3.chr7b            113828413 0 + 115148730 C

a score=61126.000000
s hg38.chr4_KI270925v1_alt    357681 40 +    555799 GAGCAGAAGCAGGACTGGGCCTCAAGCTAGTGCCAGCATC
s panTro4.chr4             193060323 40 + 193495092 GAGCAGAAGCAGAACTGGGCCTCAAGCTAGTGCCAGCATC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198150641 40 + 198332218 GAGCAGAAGCAGAACTGGGCCTCAAGCTAGTGCCAGCATC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113828413 26 + 115148730 --------------CTGCGCCTCAAGCTAGTGCCAGCGTC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189124109 34 + 189454096 GAACAGAAGCACAGCTGGGCCTTGAGCTAGCGCC------
i macFas5.chr5             T 51 C 0
s papAnu2.chr5             178542893 40 + 178775436 GAACAGAAGCACAGCTGGGCCTCGAGCTAGCGCCAGCATC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135483795 40 + 135778131 GAACAGAAGCACAGCTGGGCCTCGAGCTAGCGCCAGCATC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190588700 40 - 190850796 GAGCAGAAGCAAAGCCAGACCTCAAGCTAACGCCAGCATC
i calJac3.chr3             C 0 I 2
s canFam3.chr16             18027102  8 -  59632846 ---------------------CCAAGGCA-----------
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87727478 1051 - 129401213 I
e rheMac3.chr5             183732030  0 + 184069350 C

a score=1365.000000
s hg38.chr4_KI270925v1_alt    357721 1 +    555799 T
s panTro4.chr4             193060363 1 + 193495092 T
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198150681 1 + 198332218 T
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113828439 1 + 115148730 T
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178542933 1 + 178775436 T
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135483835 1 + 135778131 T
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87727478 1051 - 129401213 I
e canFam3.chr16             18027110 0 -  59632846 C
e calJac3.chr3             190588740 2 - 190850796 I
e macFas5.chr5             189124143 0 + 189454096 C
e rheMac3.chr5             183732030 0 + 184069350 C

a score=13071.000000
s hg38.chr4_KI270925v1_alt    357722 8 +    555799 GAGCATCT
s panTro4.chr4             193060364 8 + 193495092 GAGCATCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198150682 8 + 198332218 GAGCATCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113828440 8 + 115148730 GAGCATCT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183732030 7 + 184069350 -AGCATCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189124143 7 + 189454096 -AGCATCT
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135483836 8 + 135778131 GAGCATCT
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             18027110 1 -  59632846 -------T
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87727478 1051 - 129401213 I
e calJac3.chr3             190588740 2 - 190850796 I
e papAnu2.chr5             178542934 0 + 178775436 C

a score=3600.000000
s hg38.chr4_KI270925v1_alt    357730 1 +    555799 G
s panTro4.chr4             193060372 1 + 193495092 G
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198150690 1 + 198332218 G
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113828448 1 + 115148730 G
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183732037 1 + 184069350 G
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189124150 1 + 189454096 G
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178542934 1 + 178775436 G
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135483844 1 + 135778131 G
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             18027111 1 -  59632846 G
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87727478 1051 - 129401213 I
e calJac3.chr3             190588740 2 - 190850796 I

a score=1180934.000000
s hg38.chr4_KI270925v1_alt    357731 371 +    555799 AAAAGGGGCCAGGACTCCCTGTCTCTAAG--TCTTTCATTCCCACTTTCTTGGTATCTTGGCTTTA---TCTCCAAACCAAAATCCTTTTCTT-CCCTAGAGGAGGAAATAGAACTCCAGTAGCTCTCTGCTAGCATCAAGCTAAGCTGAGGTGTAAAAACT--------------------------------------------------CTCTTCTACTTAGTTCTGTGCATGG----ACAGAATCATCTGCCTACTCACAAACCAATCCTGTAT-TGGGGGTGT-GGCATTCTGA---TCTCCCAGGTTGGGTCATG--------------TGCCTACCCTTAGGGTGGGAGGCAGAGATTTATGAGTTGGGTGAGGAAAGAGAAGTAGTTCCTGC----------------------AGAGGAAAGGAACATGCACTGAACTACAGAAATGGGGAGAAGCAATGAAT
s panTro4.chr4             193060373 371 + 193495092 AAAAGGGGCCAGGACTCCCTGTCTCTAAG--TCTTTCATTCCCGCTTTCTTGGTATCTTGGCTTTA---TCTCCAAACCAAAATCCTTTTCTT-CCCTAGAGGAGGAAATAGAACTCCAGTAGCTCTCTGCTAGCATCAAGCTAAGCTGAGGTGTAAAAACT--------------------------------------------------CTCTTCTACTTAGTTCTGTGCATGG----ACAGAATCATCTGCCTACTCACAAACCAATCCTGTAT-TGGGGGTGT-GACATTCTGA---TCTCCCAGGTTGGGTCATG--------------TGCCTACCCTTAGGGTGGGAGGCAGGGATTTATGAGTTGGGTGAGGAAAGAGAAGTAGTTCCTGC----------------------AGAGGAAAGGAACATGCACTGAACTACAGAAATGGGGAGAAGCAATGAAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198150691 422 + 198332218 AAAAGGGGCCAGGACTCCCTGTCTCTAAG--TCTTCCATTCCCACTTTCTTGGTATCTTGGCTTTA---TCTCCAAACCAAAATCCTTTTCTT-CCCTATAGGAGGAAATAGAACTCCAGTAGCTCTCTGCTAGCATCAAGCTAAGCTGAGGTGTAAAAATTTCTTCTACTTAGTTCTGTGCATCAAGCTAAGCTGAGGTGTAAAAACTCTCTTCTTCTACTTAGTTCTGTGCATGG----ACAGAATCATCTGCCTACTCACAAACCAATCCTGTAT-TGGGGGTGTGGGCATTCTGA---TCTCCCAGGTTGGGTCATG--------------TGCCTACCCTTAGGGTGGGAGGCAGAGATTTATGAGTTGGGTGAGGAAAGAGAAGTAGTTCCTGA----------------------AGAGCAAAGGAACATGCACTGAACTACAGAAATGGGGAGAAGCAATGAAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113828449 371 + 115148730 AAAAGGGGCCAGGACTCCTTGTCTCTAAG--TCTTTCATTCCCACTTTCTTGGTGTCTTGGCTTTA---TCTCCAAACCAAAATCCTTTTCTT-CCCTAGAGCAGGAAATAGAACTCCAGTAGCTCTCTGCCATCATCAAGCTAAGCTGAGGTGTAAAAATT--------------------------------------------------CTCTTCTACTTAGTTCTGTGCATGG----ACAGAATCATCTGCCTACTCACAAACCAATCCTGTAT-TGGGGGTGT-GGCATTCTGA---TCTCCCAGGTTGGGCCATG--------------TGCCTACCCTTAGGGTGGGAGGCAGAGATTTATGAGTTGGGTGAGGAAAGAGAAGTAGTTCGTGC----------------------AGAGGAAGGGAACATGCACTGAACTACAGAAATGGGGAGAAGCAATGAAT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183732038 373 + 184069350 AAAAGGGGCCAGGACTCTCTGTCTCTAAG--TCTCTCATTCCCACTTTCTTGGTGTCCTGGCTTCA---TCTCCAAACCAAAATCCTTTTCTT-CCCTAGAGCAGGAAATAAAACTCCGCTAGTTCTCTGCTAGCATCAAGCTAAGCTGAGGTGTAAAAACT-----------------------------------------------CTCTTCTTTTACTTAGTTCTGTGCACGG----ACAGAATCATCTGCCTACTCGT-GACCAATCTGGTAT-TGGGGGTGT-GACATTCTGA---TCACCCAGGTTGGGTCAAG--------------TGCCTACCCTCAACATGGGAGGCAGAGATTTATGAGTTGGGTGAGGAAAGAGAAGTAGTTCCAGC----------------------AAAGGAAAGGAAAATGCACTGAACTACAGAAATGGGGAGAAGCAATGAAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189124151 373 + 189454096 AAAAGGGGCCAGGACTCTCTGTCTCTAAG--TCTCTCATTCCCACTTTCTTGGTGTCCTGGCTTCA---TCTCCAAACCAAAATCCTTTTCTT-CCCTAGAGCAGGAAATAAAACTCCGCTAGTTCTCTGCTAGCATCAAGCTAAGCTGAGGTGTAAAAACT-----------------------------------------------CTCTTCTTTTACTTAGTTCTGTGCACGG----ACAGAATCATCTGCCTACTCGT-GACCAATCTGGTAT-TGGGGGTGT-GACATTCTGA---TCACCCAGGTTGGGTCAAG--------------TGCCTACCCTCAACATGGGAGGCAGAGATTTATGAGTTGGGTGAGGAAAGAGAAGTAGTTCCAGC----------------------AAAGGAAAGGAAAATGCACTGAACTACAGAAATGGGGAGAAGCAATGAAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178542935 373 + 178775436 AAAAGGGGCCAGGACTCTCTGTCTCTAAG--TCTCTCATTCCCACTTTCTTGGTGTCTTGGCTTCA---TCTCCAAACCaaaatccttttctt-tcctaGAGCAGGAAATAAAACTCCGCTAGTTCTCTGCTAGCATCAAGCTAAGCTGAGGTGTAAAAACT-----------------------------------------------CTCTTCTTTTACTTAGTTCTGTGCACGG----ACAGAATCATCTGCCTACTCGC-GACCAATCTGGTAT-TGGGGGTGT-GGCATTCTGA---TCACCCAGGTTGGGTCAAG--------------TGCCTACCCTcaacatgggaggcagagatttaTGAGTTGGGTGAGGAAAGAGAAGTAGTTccagc----------------------aaaggaaaggaaaatgcacTGAACTACAGAAATGGGGAGAAGCaatgaat
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135483845 373 + 135778131 AAAAGGGGCCAGGACTCGCTGTCTCTACG--TCTCTCATTCCCACTTTCTTGGTGTCTCGGCTTCA---TCTCCAAACCAAAATCCTTTTCTT-CCCTAGAGCAGGAAATAGAACTCCGCTAGTTCTCTGCTAGCATCAAGCTAAGCTGAGGTGTAAAAACT-----------------------------------------------CTCTTCTTTTACTTAGTTCTGTGCAGGG----ACAGAATCATCTGCCTACTCAC-GACCAATCCGGTAT-TGGGGGTGT-GGCATTCTGA---TCACCCAGGTTGGGTCATG--------------TGCCTACCCTCAACATGGGAGGCAGAGATTTATGAGTTGGGTGAGGAAAGAGTAGTAGTTCCAGC----------------------AAAGGAAAGGAAAATGCACTGAACTACAGAAATGGGGAGAAGCAATGAAT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190588742 390 - 190850796 AAAAGGGGCGAGGACTCCCTGTCTCTAGG--TCTTTCATTCCCACTTTCTTGGTGTCTTGGCTTCA---TCTCCAAACTGAAATCCTTTTCTT-CCCTAGAGCAGGAAATACGACTCCAGTAGTTCTCTGCTAGCATCGTGCTAAGCTGAAACGT-ACAACT-----------------------------------------------CTCTTCTTCTACTTAGTTCTATGTACGGTCCAACAGAATCATCTGCCTACTCTCGAACCAATCCTGTAC-C-GGGGTGT-GGCATTCTGA---TTACCCACATTGGGTCATGGATTTCCTTCTTTTCTCCTACCCTTAACGTGGGAGGCAGAGATGGATGAGTTGGGTGAGGAAAGAGAAGTGGTTCCTGC----------------------AAAGGAAAGGAAAATGCACTGAAGTCCAGAAATGGGGAGAAGCAATGAAT
i calJac3.chr3             I 2 C 0
s canFam3.chr16             18027112 395 -  59632846 AGAAGAGGCCAGAACTCCCTATCTCTTTGGTTCTTGCATTGCCAATTTCTTGGTATGTTGGCTTTATCTTCTCCAACCTAAAACCTATTTCTTCCCCCACAGCAGGAAACATATGTCCAATGGCTCTCTGCTGGCAT---------CTTAGATG-AAAAGCT--------------------------------------------------TCTCTTAATTTATTTTTGTGTTTGGTCCAATCGAATCACCAGTCTAATCTTAGACTGATGCTATATCTAGGGGTGG-GGTGTTTTGCCATTGGTCCAGATTGGGTCATG--------------GGCCTACCATTA-TACAAGGCACAAGGATTTATGATGGGGCTGAAGAAAGAGAA-TAGTCCCTGTaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaGGAGAATGCACTGCACTACAAGAATAGAGGTAAGTAATGAGT
i canFam3.chr16            C 0 I 292
e mm10.chr8                 87727478 1051 - 129401213 I

a score=12285.000000
s hg38.chr4_KI270925v1_alt    358102 3 +    555799 ATT
s panTro4.chr4             193060744 3 + 193495092 ATT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198151113 3 + 198332218 ATT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113828820 3 + 115148730 ATT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183732411 3 + 184069350 ATT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189124524 3 + 189454096 ATT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178543308 3 + 178775436 att
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135484218 3 + 135778131 ATT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190589132 3 - 190850796 ATT
i calJac3.chr3             C 0 I 311
s canFam3.chr16             18027799 3 -  59632846 ATT
i canFam3.chr16            I 292 C 0
e mm10.chr8                 87727478 1051 - 129401213 I

a score=80315.000000
s hg38.chr4_KI270925v1_alt    358105 25 +    555799 AAAAGAAGTAGACTGATGTTAGGAG
s panTro4.chr4             193060747 25 + 193495092 AAAAGAAGTAGACTGATGTTAGGAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198151116 25 + 198332218 AAAAGAAGTAGACTGATGTTAGGAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113828823 25 + 115148730 AAAAGAAGTAGACTGATGTTAGGAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183732414 25 + 184069350 AAAAGAAACAGACTCACGTTAGGAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189124527 25 + 189454096 AAAAGAAACAGACTCACGTTAGGAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178543311 25 + 178775436 aaaagaaatagactTACGTTAGGAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135484221 25 + 135778131 AAAAGAAATAGACTTACGTTAGGAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190589446 25 - 190850796 aaaagaaGTAGAGTAATGTTAGGGG
i calJac3.chr3             I 311 I 1
s canFam3.chr16             18027802 25 -  59632846 CAAAGAAGTACAATTGTGTTAAGAG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87727478 1051 - 129401213 I

a score=388663.000000
s hg38.chr4_KI270925v1_alt    358130 118 +    555799 AAAATGGCAAAACTAGGGTAAGATTCCCATATATCTCAGCTGGAGTACTACAGAGCCCCATGTGTTAATACACAAGAATACATTTTATAGAAGATGTTATTATTATTTGTATGAAACT
s panTro4.chr4             193060772 117 + 193495092 AAAATGGCAAAACTAGGGTA-GATTCCCATATATCTCAGCAGGAGTACTAGAGAGCCCCATGTGTTAATACACAAGAATACATTTTATAGAAGATGTTATTATTATTTGTATGAAACT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198151141 116 + 198332218 -AAATGGAAAAACTAGGGTA-GATTCCCATATATCTCAGCAGGAGTACTAGAGAGCCCCATGTGTTAATACACAAGAATACATTTTATAGAAGATGTTATTATTATTTGTATGAAACT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113828848 114 + 115148730 AAAATGGCAAAACTAGGGTA-GATTCCCATATATCTCAGCAGGAGTACTAGAGAGCCATATGTGTGAATACACAAGAATACATTTTATAGAAGA---TATTATTATTTGTATGAAACT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183732439 116 + 184069350 AAAATGGCAAAACTAGGGTA-GATTCCCATATATCTCAGCAGG-GTACTAGAGAGCCCCACGTGTTAATACACAAGAATACATTCTATGGAAGATGTTATTATTATCTGTATGAAACT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189124552 116 + 189454096 AAAATGGCAAAACTAGGGTA-GATTCCCATATATCTCAGCAGG-GTACAGGAGAGCCCCACGTGTTAATACACAAGAATACATTCTATGGAAGATGTTATTATTATCTGTATGAAACT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178543336 116 + 178775436 AAAATGGCAAAACTAGGGTA-GATTCCCATATATCTCAGCAGG-GTACTAGAGAGCCCCACGTGTTAATACACAAGAATACATTCTATGGAAGATGTTATTATTATCTGTATGAAACT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135484246 116 + 135778131 AAAATGGCAAAACTAGGGTA-GATTCCCATATATCTCAGCAGG-GTACTAGAGAGCCCCACGTGTTAATACACAAGAATACATTCTATGGAAGATGTTATTATTATCTGTATGAAACT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190589472 117 - 190850796 AAAACAGCAAAACTAGGGTA-GATTCCCACATATCTCAGCAGGAGTACTAGAGATCCCCACGTGTTAATACACACAAACGATTTTTATAGAAGATGTTATTATTCTTTGTGTGAAACT
i calJac3.chr3             I 1 C 0
s mm10.chr8                 87728529  99 - 129401213 AAAATGGCACAAATAGAAGT-GG-----------CTCAGGAGGAGCACCTGGGA-CCCCAAGTGCTAATAGGCAAGAATAGTTTTTCAGAGAGATGCTATT------CATATGAAACT
i mm10.chr8                I 1051 C 0
s canFam3.chr16             18027827  97 -  59632846 -----AACAAA----------GATTATTATGTGGCTCAGCAGGACTACTTGAGAGTCCCATGTGTCAAGAGGCAAGAATGGCTTTTATATAAG------CTATTACTTGAATGGAATT
i canFam3.chr16            C 0 C 0

a score=16386.000000
s hg38.chr4_KI270925v1_alt    358248 5 +    555799 GGATA
s panTro4.chr4             193060889 5 + 193495092 GGATA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198151257 5 + 198332218 GGATA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113828962 5 + 115148730 GGATA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183732555 5 + 184069350 GGATG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189124668 5 + 189454096 GGATG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178543452 5 + 178775436 GGATG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135484362 5 + 135778131 GGATG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190589589 5 - 190850796 GCATA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18027924 5 -  59632846 GGATA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87728628 0 - 129401213 C

a score=578245.000000
s hg38.chr4_KI270925v1_alt    358253 197 +    555799 CTCAGTTGAATTCGTACATGAATGCATaatgccatcgctcactaccaaaaattttgcagtagagcttcccacatttggggcaattccagggatcagcatgcccctataatggatccagagtgga------atggataagccttgccctgggaaaactgcctttaagatcatggtatctgccctgccaggtaagtatGAAACTG
s panTro4.chr4             193060894 197 + 193495092 CTCAGTTGAATTCATACATGAATGCATaatgccatcgctcactaccaaaaattttgcagtagagcttcccacatttggggcaattccagggatcagcatatccctataatggatccagagtgga------atggataagccttgccctgggaaaactgcctttaagatcatggtatctgccctgccaggtaagtatGAAACTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198151262 197 + 198332218 CTCAGTTGAATTCATTCATGAATGCATaatgccatcactcactaccaaaaattttgcagtagatcttcccacatttggggcaattccagggatcagcatatccctataatggatctagagtgta------atggatcagccttgccctgggaaaactgcctttaagatcatggtatctgccatgccaggtaagtatGAAACTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113828967 197 + 115148730 CTCAGTTGAATTCGTACATGAATACATaatgcagtcactcactaccacaaattttgcagtagagcttcccacatttggggcaattccagggatcagcatatccctataatggatccagagtgta------atggataagccttgccctgggaaaactgcctttaagatcatggtatctgccctgccaggtaagtatGAAACTG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183732560 203 + 184069350 CCCACTGGAATTTGTACATgaatgcacaatgcagtcactcacgaccacaaattctgcagtagagcttcccacatgtggggcaattccagggatctgcacatccctataatggatccagagtgtaatggatatggataagccgtgccctgggaacactgcctttaagatcatggtatctgccctgccagggaagtatGAAACTG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189124673 203 + 189454096 CCCACTGGAATTTGTACATgaatgcacaatgcagtcactcacgaccacaaattctgcagtagagcttcccacatgtggggcaattccagggatctgcacatccctataatggatccagagtgtaatggatatggataagccgtgccctgggaacactgcctttaagatcatggtatctgccctgccagggaagtatGAAACTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178543457 203 + 178775436 CCCACTGGAATTTGTACATGAATGCACAATGCAGTCACTCACTACCACAAATTCTGCAGTAGAGCTTCCCACATGTGGGGCAATTCCAGGGATCCGCACATCCCTATAATGGATCCAGAGTGTAATGGATATGGATAAGCCGTGCCCTGGGAAAACTGCCTTTAAGATCATGGTATCTGCCCTGCCAGGGAAGTATGAAACTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135484367 197 + 135778131 CCCACTGGAATTTGTACATgaatgcacaatgcagtcactcactaccacaaattctgcagtagagcctcccacatgtggggcaattccagggatcagcatatccctataatggatccagagtgta------atggataagccgtgccctgggaaaactgcctttaagatcatggtatctgccctgccagggaagtatGAAACTG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190589594 197 - 190850796 CCCAGTTGAATTCATGCATGAATGCATaatgcagtcacccactaccacaaattttgcagttgagttttccacatttggggcaactgcagggatcagcatatccctgtaatggatccagggagta------atggatgagcctcgccctgggaaaattgcctttaagatcatggtatctgccctgccaggaaagtatGAAACTG
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87728628   0 - 129401213 C
e canFam3.chr16             18027929   0 -  59632846 C

a score=12855.000000
s hg38.chr4_KI270925v1_alt    358450 4 +    555799 GATC
s panTro4.chr4             193061091 4 + 193495092 GATA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198151459 4 + 198332218 GATA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113829164 4 + 115148730 GATA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183732763 4 + 184069350 GATA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189124876 4 + 189454096 GATA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178543660 4 + 178775436 GATA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135484564 4 + 135778131 GGTA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190589791 4 - 190850796 GATA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87728628 4 - 129401213 GATG
i mm10.chr8                C 0 C 0
e canFam3.chr16             18027929 0 -  59632846 C

a score=520584.000000
s hg38.chr4_KI270925v1_alt    358454 146 +    555799 TTTCTAAGGCACATTGGAACAAACCTCATTTTTAGCCACAAGTT---ATGGGTATTTtgaaaagccctt--attgcaaaacacata--gaaacagcaggtaaaatacagtcaacatggacttaa-tgcatggttgttcttccaagagggtaagg
s panTro4.chr4             193061095 147 + 193495092 TTTCTAAGGCACATTGGAACAAACCTCATTTTTAGCCACAAGTT---ATGggtatcttgaaaagccctt--attgcaaaacacata--gaaatagcaggtaaaatacagtcaacatggacttaaatgcctagttgtgcttccaggaggataagg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198151463 147 + 198332218 TTTCTAAGCCACATTGGAACAAACCTCATTTTTAGCCACAAGTT---ATGGGTATTTTGAaaaaccctt--attgcaaaacacata--gaaatagccggtaaaatacagtaaacatagacttaaatgcatagttgtgcttccaagagaataaga
i ponAbe2.chr4             C 0 I 12
s nomLeu3.chr7b            113829168 147 + 115148730 TTTCTAAGGCACATTGGAACAAACCTCGTTTTTAGCAACAAGTT---ATGGGTATTTtgaaaagccctt--attgcaaaacacata--gaaatagcaggtaaaatacagtaaacatggacttaaatgcatagttgtgcttccaagagaataaga
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183732767 145 + 184069350 TTTCTAAGGCACATTGAAACAAACCTCCTTTTTAGCAACAAGTT---ACGGGTATTTtgaaaatccctg--actgcaaaatgcata--gaaatagcagataaaatacagtaaacatggacttaaatgcatagttgtgcttccaagagaataa--
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189124880 145 + 189454096 TTTCTAAGGCACATTGAAACAAACCTCCTTTTTAGCAACAAGTT---ACGGGTATTTtgaaaatccctg--actgcaaaatgcata--gaaatagcagataaaatacagtaaacatggacttaaatgcatagttgtgcttccaagagaataa--
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178543664 145 + 178775436 TTTCTAAGGCACATTGAAACAAACCTCCTTTTTAGCAACAAGTT---ACGGGTATTTTGAAAATCCCTG--ACTgcaaaatgaata--gaaatagcAGATAAAATACAGTAAACATGGACTTAAATGCATAGTTGTGCTTCCAGGAGAATAA--
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135484568 143 + 135778131 TTTCTAAGGCACATTGAAACAAACCTCCTTTTTAGCAACAAGTT---ATGGGTATTTtgaaaatccctg--actgcaaaatgcata--gaaatagcagataaaatatagtaaacatggacttaaatgcatagttgtgcttccaagagaat----
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190589795 145 - 190850796 TTTCTAAGG-GCATTGAAACAAATCTCCTTTTTAGC-ACAAGTT---ATGGGTGTTTtgaaaagccatt--attgcaaaacacata--gaaatagaagataaaatacagtaaacatggatcgaaatgcataattgtgcttccaagagaataaga
i calJac3.chr3             C 0 I 1
s mm10.chr8                 87728632 150 - 129401213 TTTCTAAGTTTCAATAAAGCAAACATC---TTTAGCACTGAGTTGAAGAAGATATTCTGAAAACACATGGAATAGCAAATAAAATGCCAAAGAAGAAGAAGAAGAAAAGAAAAC-TGCAtttaaatgcatagttgtgcctctgagagagtaaga
i mm10.chr8                C 0 I 1
s canFam3.chr16             18027929 148 -  59632846 TTTCTAAGGTACATTAAAACAAAcctc--ttctagcaataagttgaactggatattctgaaaagccctt--actgcaaaacacata--gaaatagtagataaaatatagcaaacatccatttaaatgcatagttgtgcttccaagagagcaagg
i canFam3.chr16            C 0 C 0

a score=-12768.000000
s hg38.chr4_KI270925v1_alt    358600 15 +    555799 -aaaccccc---ggggaaa
s panTro4.chr4             193061242 15 + 193495092 -aaaccccc---gggggaa
i panTro4.chr4             C 0 I 5
s nomLeu3.chr7b            113829315  3 + 115148730 ---------------gaa-
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183732912  6 + 184069350 ------------gagaaa-
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189125025  6 + 189454096 ------------gagaaa-
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178543809  6 + 178775436 ------------GAGAAA-
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135484711  5 + 135778131 -------------agaaa-
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190589941 14 - 190850796 -aaataccc---agggga-
i calJac3.chr3             I 1 C 0
s mm10.chr8                 87728783 14 - 129401213 -aaaccctc---agggaa-
i mm10.chr8                I 1 C 0
s canFam3.chr16             18028077 18 -  59632846 gaaatatccaaggggaaa-
i canFam3.chr16            C 0 C 0
e ponAbe2.chr4             198151610 12 + 198332218 I

a score=-12039.000000
s hg38.chr4_KI270925v1_alt    358615 26 +    555799 tggcaaagcagaaaacctgaatggGG
s nomLeu3.chr7b            113829318  9 + 115148730 ------------atacctaga-----
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183732918  8 + 184069350 -------------tacccagg-----
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189125031  8 + 189454096 -------------tacccagg-----
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178543815  8 + 178775436 -------------TACCCAGG-----
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135484716  8 + 135778131 -------------tacccagg-----
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87728797 12 - 129401213 ----gagtgacagtaa----------
i mm10.chr8                C 0 C 0
s canFam3.chr16             18028095  6 -  59632846 ----------caataa----------
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190589955  0 - 190850796 C
e ponAbe2.chr4             198151610 12 + 198332218 I
e panTro4.chr4             193061257  5 + 193495092 I

a score=13324.000000
s hg38.chr4_KI270925v1_alt    358641 9 +    555799 GGGAAACGG
s ponAbe2.chr4             198151622 9 + 198332218 ggaaaatgg
i ponAbe2.chr4             I 12 C 0
s nomLeu3.chr7b            113829327 9 + 115148730 ggaaaatgg
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183732926 9 + 184069350 ggaaaatgg
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189125039 9 + 189454096 ggaaaatgg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178543823 9 + 178775436 GGAAAATGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135484724 9 + 135778131 ggaaaacgg
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190589955 6 - 190850796 ---aaatga
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87728809 6 - 129401213 ---gagcga
i mm10.chr8                C 0 C 0
s canFam3.chr16             18028101 2 -  59632846 -ga------
i canFam3.chr16            C 0 C 0
e panTro4.chr4             193061257 5 + 193495092 I

a score=132535.000000
s hg38.chr4_KI270925v1_alt    358650 32 +    555799 CAAAGCAGAAAACCTGAATGGCCAATGAATGC
s panTro4.chr4             193061262 32 + 193495092 caaagcagaaaacctgaatggccaatgaatgc
i panTro4.chr4             I 5 C 0
s ponAbe2.chr4             198151631 32 + 198332218 gaaagcagaaaacctgaatggtcaatgaatac
i ponAbe2.chr4             C 0 I 1
s nomLeu3.chr7b            113829336 32 + 115148730 caaagaagaaaacctgaatggtcaatgaatac
i nomLeu3.chr7b            C 0 I 1
s rheMac3.chr5             183732935 32 + 184069350 caaagcagaaaacctgaatggtcaattaatac
i rheMac3.chr5             C 0 I 1
s macFas5.chr5             189125048 32 + 189454096 caaagcagaaaacctgaatggtcaattaatac
i macFas5.chr5             C 0 I 1
s papAnu2.chr5             178543832 32 + 178775436 CAAAGCAGAAAACCTGAATGGTCAATTAATAC
i papAnu2.chr5             C 0 I 1
s chlSab2.chr7             135484733 32 + 135778131 caaagcagaaaacctgaatggtcaattaatac
i chlSab2.chr7             C 0 I 1
s calJac3.chr3             190589961 32 - 190850796 caaagcagaaaacctgaatggtcaatgaatac
i calJac3.chr3             C 0 I 321
s mm10.chr8                 87728815 28 - 129401213 ----ccagaaaccctgggtagtgggtgaatac
i mm10.chr8                C 0 C 0
s canFam3.chr16             18028103 32 -  59632846 caaagcagaaaacctgaatgatcaatgaatac
i canFam3.chr16            C 0 C 0

a score=498684.000000
s hg38.chr4_KI270925v1_alt    358682 142 +    555799 -AAAACCATGGCTGCTCCGGAAACATTTCCCAACCTCAAGAATCTAGAGACTTGAATCTGAAGGCTGAGCAGGGTGGCAGAAGACAAGGCTTTTAGGTCACTGCCAGGTAGAG----------------ACCTC----TGCATACATTCAGAACTCATTAATC
s panTro4.chr4             193061294 141 + 193495092 -aaaaccatggtggctagggaaacatttcccaacctcaagaatctagagacatgaatctgaaggctgagtggggtggcagaagacaaggcttt-aggtcactgccaggtagag----------------aCCTC----TGCATACATTCAGAACTCATTAATC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198151664 141 + 198332218 -aaaaccatggctgctctggaaacatttcccaatctcaagaatctagagacttgaatctgaaggctgagtggggtggcagaagacaaggcttt-aggtcactgccaggtagag----------------aCCTC----TGCATACATTCAGAACTCATCAATC
i ponAbe2.chr4             I 1 C 0
s nomLeu3.chr7b            113829369 141 + 115148730 -aaaaccatgactgctctggaaacattccccaatctcaagaatctagagacttgaatctgaagactgtgtggggtggcagaagacaagccttt-aggtcactgccaggtagag----------------aCCCC----TGCATACATTCAGAACTTATTAATC
i nomLeu3.chr7b            I 1 C 0
s rheMac3.chr5             183732968 141 + 184069350 -aaaaccacgagtgctctggaaacatttcccaatctcaagaatctagagacttgcatctgaagtctgtgtagggtagcagaagacaaggcttt-agatcactgcaaggtagag----------------aCCTC----TGCATAAATTCAGAACGCATTAATC
i rheMac3.chr5             I 1 I 136
s macFas5.chr5             189125081 141 + 189454096 -aaaaccacgagtgctctggaaacatttcccaatctcaagaatctagagacttgcatgtgaagtctgtgtagggtagcagaagacaaggcttt-aggtcactgcaaggtagag----------------acctc----tgcataaattcagaacGCATTAATC
i macFas5.chr5             I 1 C 0
s papAnu2.chr5             178543865 141 + 178775436 -AAAACCACGAGTGCTCTGGAAACATTTCCCAATCTCAAGAATCTAGAGACTTGAATCTGAAGTCTGTGTAGGGTAGCAGAAGACAAGGCTTT-AGGTCACTGCAAGGTAGAG----------------ACCTC----TGCATAAATTCAGAACTCATTAATC
i papAnu2.chr5             I 1 C 0
s chlSab2.chr7             135484766 141 + 135778131 -aaaaccacgagtgctctggaaacatttcccaatctcaagaatctagagacttgaatctgaaggctgtgtagggtagcagaagacaaggcttt-aggtcactgcaaggtagag----------------acctc----tgcataaattcagaactcATTAATC
i chlSab2.chr7             I 1 C 0
s calJac3.chr3             190590314 140 - 190850796 -aagaccatgactgctctggaaacatttgtaaatctcaagaatctagaggcttgaatttgaaggctgtgcagcacagcagaagtcaaggcttt-aggtcactgcaa-gTAGAT----------------ACTTC----TGTATAAATTCAGAATTCATAAATC
i calJac3.chr3             I 321 C 0
s mm10.chr8                 87728843 140 - 129401213 -aaaaacgtgcctgctctggaaatatttcccaaccccaagaattttaagactcaaatctgatagctgtgcaggc---ccagagacaaggctttCAGGGAGCAG--AAGGAAAG----------------ACCTCACTAGGCATTATTTCAGAA-TCATGAATC
i mm10.chr8                C 0 C 0
s canFam3.chr16             18028135 156 -  59632846 aaacaccatggctgctctgcaaacatttgccaatcccaacactctagggatgtggatttcaaggctgtgcaggg--acagaggaaaaggcttt-ggaccccagcaaggtagagtataaattcagtataaatttc----tgtataaattaagaagtcatgaatc
i canFam3.chr16            C 0 C 0

a score=13987.000000
s hg38.chr4_KI270925v1_alt    358824 4 +    555799 AGGA
s panTro4.chr4             193061435 4 + 193495092 AGGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198151805 4 + 198332218 AGGA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113829510 4 + 115148730 AGGA
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189125222 4 + 189454096 AGGA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178544006 4 + 178775436 AGGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135484907 4 + 135778131 AGGA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190590454 4 - 190850796 AAGA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87728983 4 - 129401213 AAGA
i mm10.chr8                C 0 C 0
s canFam3.chr16             18028291 4 -  59632846 ggga
i canFam3.chr16            C 0 I 6301
e rheMac3.chr5             183733109 136 + 184069350 I

a score=129611.000000
s hg38.chr4_KI270925v1_alt    358828 53 +    555799 ATTAAAAGCTTCTAAcaaaagtaaagagat---aaaaaaggagcttgttcatctca
s panTro4.chr4             193061439 53 + 193495092 ATTAAAAGCTTCTAACAAAAGTAAAGAGAT---AAAAAAGAAGCTTGTTCAtctca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198151809 53 + 198332218 ATTAAAAGCTTCTaacaaaagtaaagagac---aaaaaaggagtttgttcatctca
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113829514 53 + 115148730 ATTAAAAGTTTCTAACAAAAGTAAAGAGAT---AAAAAAGGAGCTTGTTCAtctca
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189125226 52 + 189454096 ATTAAAAGCTTCTAACAAAAGTAGAGata----aaaaaaagagcttgttcatttca
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178544010 53 + 178775436 ATTAAAAGCTTCTAACAAAAGTAAAGAGAT---aaaaaaaGAGCTTGTTCatttca
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135484911 53 + 135778131 ATTAAAAGCTTCTAACAAAAGTAAAGAGAG---AAAAAAAGAGCTTGTTCATTTca
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190590458 56 - 190850796 ATTAAAAGCTTCTAAcagaagtaaagagatttaaaaaaagaaacttgttcatctca
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87728987 41 - 129401213 TGTGAA------------AAGTTAggagat---gaaaagggagtttgtccatctca
i mm10.chr8                C 0 I 4875
e canFam3.chr16             18028295 6301 -  59632846 I
e rheMac3.chr5             183733109 136 + 184069350 I

a score=201765.000000
s hg38.chr4_KI270925v1_alt    358881 84 +    555799 tgttcattgcagcattattcataatagccaagaggtaaaagcaacctaaatatctgtcaagagatgaatggattttaaaaagtg
s panTro4.chr4             193061492 84 + 193495092 tgttcattgaagcattattcataatagccaagaggtaaaagcaacctaaatatctgtcaagagatgaatggattttaaaaagtg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198151862 84 + 198332218 tgttcattggagcattattcataatagccaagaggtaaaagcaacctaaatatctgtcaagagatgaatggattttaaaaagtg
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113829567 84 + 115148730 tgttcattgcagcattattcataatagccaagaggtaaaagcaacctaaatatcagtcaagagatgaatggattttaaaaagtg
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189125278 84 + 189454096 tgttcattgcagcattattcacaatagccaagaggtaaaagcaacctgaatatctgtcaacagatgaatggattttaaaaagtg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178544063 84 + 178775436 tgttcattgcagcattattcacaatagccaagaggtaaaAGCAACCTAAATatctgtcaacagatgaatggattttaaaaagtg
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135484964 84 + 135778131 tgttcattgcagcattattcacaatagccaagaggtaaaagcaacctaagtatctgtcaacagatgaatggattttaaaaagtg
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190590514 84 - 190850796 tgtttattgcagcattattcacaacagtcaagaggtaaaagcagcctaaatgtctgtcaacaggtgaatggattttaaagagtt
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87729028 4875 - 129401213 I
e canFam3.chr16             18028295 6301 -  59632846 I
e rheMac3.chr5             183733109 136 + 184069350 I

a score=712867.000000
s hg38.chr4_KI270925v1_alt    358965 249 +    555799 gtatatacacaataaattattattcagccttaaaaaagaaagaaatcgtgtcatatgtcataacatagataaaccttggggatactatactaagtgaaataaaccagtcacaaaaatacaaacacagtgctgcatgatccttcttat---atgaggtttttaaagtagtcaaactcttagaaacagagacgtaaaatgacaggtgccagggactagcggagggggaaaagaggacttgttcagtgggtatag
s panTro4.chr4             193061576 249 + 193495092 gtatataaacaataaattattattcagccttaaaaaagaaggaaatcctgtcatatgtcataacatagataaaccttggggacactatactaagtgaaataaaccagtcacaaaaatacaaacacagtgctgcatgatccttcttat---atgaggtctttaaagtagtcaaactattagaaacagagacgtaaaatgacagatgccagggactagcggagggggaaaagaggacttgttcaatgggtatag
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198151946 247 + 198332218 gtatatacacaataaattattattcagcc-taaaaaagaaggaaatcctgtcatatgtcataacatagataaaccttggggatactatactaagtgaaataaa-cagtcacaaaaatacaaacacagtgctgcatgatccttcttat---atgaggtttttaaagtagtcaaactcttagaaacagagacgtaaaatgacagatgccagggactagtggagggggaaaaaaggacttgttcaatgggtatag
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113829651 249 + 115148730 gtatatacacaataaattattattcagccttaaaaaagaaggaaatcctgtcatatgtcataacatagataaaccttggggatattatactaagtgaaataaaccagtcacagaaatacaaacacagtgctgcatgatccttcttat---atgaggtttttaaagtagtcaaactcttagaaacagagacataaaatgacaggtgccagggactagcggaggggaaaaagaggacttgttcaatggatatag
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183733245 252 + 184069350 gtatatacacaataaactactattcaaccttataaaagaagaaaatcctgtcatatgtcataacatagataaactttggtgatattatactaagtgaaataaaccactcacaaaaatacaaacacagtgctgcatgatccttcttatatgatgaggtttttaaagtagtcaaactcttagaaacagagacgtaaaatgataggtgccagggactcgcggagcgggaaaagaggagttgttcaatgggtagag
i rheMac3.chr5             I 136 C 0
s macFas5.chr5             189125362 252 + 189454096 gtatatacacaataaactactattcaaccttataaaagaagaaaatcctgtcatatgtcataacatagataaactttggtgatattatactaagtgaaataaaccactcacaaaaatacaaacacagtgctgcatgatccttcttatatgatgaggtttttaaagtagtcaaactcttagaaacagagacgtaaaatgataggtgccagggactcgcggagcgggaaaagaggagttgttcaatgggtagag
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178544147 246 + 178775436 gtatataCACAATAAACTACTATTCAaccttataaaagaagaaagtccTGTCATATGTCATAACATAGACAAACTTTGGTgatattatactaagtgaaataaaccactcacaaaaatacaaacacagtGCTGCATGATCCTTCTTATATGATGAGGTTTTTAAAGTAGTCAAACTCTT------AGAGACGTAAAATGATAGGTGCCAGGGACTCGCGGAGCGGGAAAAGAGGAGTTGTTCAATGGGTAGAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135485048 251 + 135778131 gtatatacacaataaactactattcaaccttataaaagaagaaaatcctgtcatatgtcataacatagataaactttggtgatattatactaagtgaaataaaccactcacaaaaatacacacacagtgctgcatgatccttcttagatgatgaggtttttaaagtagtcaaactcttagaaacagagacgtaaaatgataggtgccagggactcgcagag-gggaaaagaggagttgttcaatgggtagag
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190590598 248 - 190850796 gtgtataaacaataaattattattcagccttaaaaaagaaggaaatcctgtcatgtgttgtaacatagatcaaccttggggacattataccaagtgaaataaaccagtcacaaaaatacaaacacagtatggcatgagtcttcttat---atgaggtttttaaagtagtcaaactcttagaaacaggaacagaaaacagtgggtgccaggaactaacggag-gggaaaggaggagttgttcgatgggtataa
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87729028 4875 - 129401213 I
e canFam3.chr16             18028295 6301 -  59632846 I

a score=642490.000000
s hg38.chr4_KI270925v1_alt    359214 198 +    555799 agttttaTAG-TGAATCCCACACT-TAATCCTACTCAAGCTGGTATAGAGGATAGAAACA-----AAGATAAGActatagatttat-gaacaataaaa---agtgtaaaccaagcattctatacctagccaaactgtcattcacatatggagatgaaaagagaaaaagagtttcaaacatgcaggaatgtaggac-aatcatttgtacaa
s panTro4.chr4             193061825 200 + 193495092 agttttaTAGGTGAATCCCACACTCTAATCCTACTCAAGCTGGTATAGAGGATGGGAACA-----AAGATAAGActatagatttat-gaacaataaaa---agtgtaaaccaagcattctatacctagccaaactgtcattcacatatggagacaaaaagagaaaaagagtttcaaacatgcaggaatgtaggac-aatcatttgtacaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198152193 200 + 198332218 agttttaTAGGTTAATCCCAAACTCTAATCCTACTCAAGCTGGTATAGAGGATAGAAACA-----AAGATAAGActatggatttat-gaacaataaaa---attgcaaaccaagcattctatacctagccaaactgtcattcatatatggagacgaaaagagaaaaagagtttcagacatgcaggaatgtaggAC-AATCATTTGTACAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113829900 195 + 115148730 agttttaTAGGTGAATCCCAAACTCTAATCCTACTCGAGCTGGTAtagaggatagaaaca----------aagactatagatttat-gaacaataaaa---agtgcaaaccaagcattctatacctagccaaactgtcattcatatatggagacaaaaagagaaaaagagtttcaaacatgcaggaatgtaggAC-AATCATTTGTACAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183733497 198 + 184069350 agttttaTAGGTGAATCCCAAACTCTAATCCTACTTAAGCTGGTATAGAGGATAGAAACA-----AAGATAAGACTGTAGATTTAT-GAACAATagaa---agtgcaaatcaagcattctatacctagccaaactgtcattcctatatggagatgaaaagag--aaagagtctcaaacatgcaggaatgtaggAC-AATCATTTGTACAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189125614 198 + 189454096 agttttaTAGGTGAATCCCAAACTCTAATCCTACTGAAGCTGGTATAGAGGATAGAAACA-----AAGATAAGACTGTAGATTTAT-GAACAATagaa---agtgcaaatcaagcattctatacctagccaaactgtcattcctatatggagatgaaaagag--aaagagtctcaaacatgcaggaatgtaggac-aatcatttgtacaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178544393 200 + 178775436 AGTTTTATAGGTGAATCCTAAACTCTAATCCTACTTAAACTGGTATAGAGGATAGAAACA-----AAGATAAGACTGTAGATTTAT-GAACAATAGAA---AGTGCAAATCAAGCATTCTATACCTAGCCAAACTGTCATTCCTATATGGAGacgaaaagagaaaaagagtctCAAACATGCAGGAATGTAGGAC-AATCATTTGTACAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135485299 198 + 135778131 agttttaTAGGTGAATCCCAAACTCTAATCCTACTTAAGCTGGTATAGAGGATAGAAACA-----AAGATAAGACTGTAGATTTAT-GAACAATagaa---agtgaaaatcaagcattctagacctagccaaactgtcattcctatatggagacgaaaagag--aaagagtctcaaacatgcaggaatgtaggAC-AATCATTTGTACAA
i chlSab2.chr7             C 0 I 67
s calJac3.chr3             190590846 205 - 190850796 agttttaCAGGTGACTCCCAAACTCTAATCCTACTCAAGCTGGTATAGAGGATAGAATCA-----AAGATAAGATtatagagttatagagcaataaagagtagtgcaaaccaaacattctatacccagccaaactgtcagtcatatatgcagacaaaaagagaagaagagtcccaaacatgcaggaccataggacttaccatttgtacaa
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18034596 196 -  59632846 AGTTTCATGGGTAAATTCCAAACTCCAATCCTACTCAAGCTGGTCTAAAGAACAaaaaaacaatggagagaagagtacagattttt-gaagggtaaag---tgcacaaaccaaccattctataaatagccaaattgtcattcttacatgaaga---------aaaaaaattctcagacaAGATCTTATGATGCAA-CATCATTTGTATAA
i canFam3.chr16            I 6301 C 0
e mm10.chr8                 87729028 4875 - 129401213 I

a score=31671.000000
s hg38.chr4_KI270925v1_alt    359412 10 +    555799 ccttactgaa
s panTro4.chr4             193062025 10 + 193495092 ccttactgaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198152393 10 + 198332218 CCTTACTGAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113830095 10 + 115148730 CCTTACTGAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183733695 10 + 184069350 CTTTACTGAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189125812 10 + 189454096 ctttactgaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178544593 10 + 178775436 CTTTACTGAA
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190591051 10 - 190850796 ccttactgaa
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18034792 10 -  59632846 CCTTACTGAA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87729028 4875 - 129401213 I
e chlSab2.chr7             135485497 67 + 135778131 I

a score=4095.000000
s hg38.chr4_KI270925v1_alt    359422 1 +    555799 a
s panTro4.chr4             193062035 1 + 193495092 a
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198152403 1 + 198332218 A
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113830105 1 + 115148730 A
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183733705 1 + 184069350 A
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189125822 1 + 189454096 a
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178544603 1 + 178775436 A
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135485564 1 + 135778131 A
i chlSab2.chr7             I 67 C 0
s calJac3.chr3             190591061 1 - 190850796 a
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18034802 1 -  59632846 A
i canFam3.chr16            C 0 I 11
e mm10.chr8                 87729028 4875 - 129401213 I

a score=858554.000000
s hg38.chr4_KI270925v1_alt    359423 314 +    555799 aatTGTTCTCTGAATTAACATAAATGTggccgggcatagtggctcacgcctgtaatcccagcactttcggaggccaaggtggatggatcgcttgaggccaagagttcaaggccatcctgggtaacatggtgaaatcccatctctagtaaaaactcaaaaattagttgggccatggtggcgggctcctgcaatcccagctgaggcaggagaatcacttgaacctgggaggcagaggttgcagtgagcacagcactgcactccagcctgagtgacagagggaaactatgcctccg-----agaaaaaCCAAGCAGACAGAC
s panTro4.chr4             193062036 313 + 193495092 aaTTGTTCTCTGAATTAAAATAAATGTggccgggcacagtggctcatgcctgtaatcccagcactttcggaggccaaggtggatggatcacttgaggccaag-gttcaaggccatcctgggtaacatggtgaaaccccatctctagtaaaaactcaaaaattagttgggccatggtggcgggctcctgtaatcccagctgaggcaggagaatcacttgaacctgggaggcagaggttgcagtgagcacagcactgcactccagcctgagtgacagagggaaactatgcctccg-----agaaaaaCCAAGCAGACAGAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198152404 314 + 198332218 ACTTGTTCTCCAAATTAAAATAAATGTggccgggcacagtggctcacgcctgtaatcccagcactttcggaggccaaggtgggtggattgcttgaggccaagagttcaaggccatcctgggtaacatggtgaaaccccgtctctagtaaaaactcaaaaattagtcgggccatggtggcgggctcctgtaatcccagctggggcaggagaatcacttgaacctggaaggcagaggttgcagtgagcgcagcactgcactccggcctgagtgacagagggaaactatgtctcca-----agaaaaaCGAAGCAGACAGAC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113830106 314 + 115148730 AATTGTTCTCCAAATTAAAATAAACATggccaggcacagtggctcatgcctgtaatcccaacactttgggaggccaaggtgggtggatcacttgaggccaggagttcaagaccagcctgggtaacatggtgaaaccccgtctctagtaaaaactcaaaaatcagtcaggccatggtggcgggctcctgtaatcccggctggggcaggagaatcacttgaacctgggaggcagaggttgcagtgagcacaccactgcactccagcctgagtgacagaggtaaactatgcatcca-----agaaaaaCCAAACAGACAGAC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183733706 311 + 184069350 AAATATTCTCCAAATTAAAATAAATGTggctgggcacagtgtctcatacctgtaatcccagcactttgggaggccgaggggggtggatcgcttcaggccaagagttcaagactagcctgggcaacatggtgaaatcccatctgtagtaaaaactcaaaaattagtcaggccatggtggcgggcacctgtaatcccagctgaggcaggagaatcacttgaacctgg-agacagaggctgcagtgagtgtaccactgcactccagcctgagtgacagagggagac--tgtctcca-----agaaaaaTGAAGCAAACAGAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189125823 311 + 189454096 aaatATTCTCCAAATTAAAATAAATGTggctgggcacagtgtctcatacctgtaatcccagcactttgggaggccgaggtgggtggatcgcttcaggccaagagttcaagactagcctgggcaacatggtgaaatcccatctgtagtaaaaactcaaaaattagtcaggccatggtggcgggcacctgtaatcccagctgaggcaggagaatcacttgaacctgg-agacagaggctgcagtgagtgtaccactgcactccagcctgagtgacagagggagac--tgtctcca-----agaaaaaTGAAGCAAACAGAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178544604 311 + 178775436 AAACATTctccaaattaaaataaatgtggctgggcacagtgtctcatacctgtaatcccagcactttgggaggcagaggtgggcggatcgcttcaggccaagagttcaagactagcctgggcaacatggtgaaatcccatctgtagtaaaaactcaaaaattagtcaggccatggtggcgggcacctgtaatcccagctgaggcaggagaatcacttgaacctgg-agacagaggctgcagtgagtgtaccactgcactccagcctgagtgacagagggagac--tgtctcca-----aGAAAAACGAAGCAAACAGAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135485565 309 + 135778131 AAATATTCTCCAAATTAAAATAAATGTggctgggcacagtgtctcatacctgtaatcccagcactttgggaggccgaggtgggtggatcgcttcaggccaagagttcaagaccagcctgggcaacatggtgaaaccccatctgtagtaaaaactcaaaaatt----aggccatggtggtgggcacctgtaatcccagctgaggcaggagaatcacttgaacctgg-agacagaggctgcagtgagtgtaccactgcactccagcctgagtgacagagggagaccatgtctcca-----agaaaCACGAAGCAAACAGAC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190591062 311 - 190850796 aaTTATTCTCCAAATTAAAATAAATGTggccagacacagtggctcacacctgtaatcc-----ctttgggagaccaacagagctgcatcacttgaggccaacagttcaagaccagcctgggaaacatggtgaaaccccgtcttt-gctaaaacacaaaatttagtcaggctgtggtgctgtgtgcctgtaat-ccagctgaggcagaagaatcacttgaacctgc-aggcagaggttgcagtgagcacaccactgcactccagcctaagtgacagaaggagactatgtctccaaaaataaaaaaaccaagcaaataaaa
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87729028 4875 - 129401213 I
e canFam3.chr16             18034803  11 -  59632846 I

a score=777602.000000
s hg38.chr4_KI270925v1_alt    359737 251 +    555799 AA-ATACATTTTACACTGGCAAAGATCAA--------ATTATTTGTGattatagtgctcatcatttactgagcatataatccctagcagtagtttcactagatactttataa--atgccatttctgtctgtccttcaacaagcctctaaattagatgttctatccactttatggatatgagaaatctaagAGAACTTACTAACCCACTCTTAGATTTCTCATCTATGAAGTTGACAAAATAGCTCATTTACAGGCTTTGTAA
s panTro4.chr4             193062349 251 + 193495092 AA-ATACATTTTACACTGGCAAAGATCAA--------ATTATTTGTGattatagtgctcatcatttactgagcatataatccctagcagtagtttcactagatactttatag--atgccatttctgtctatccttcaacaagcctctaaattagatgttctatccactttgtggatatgagaactctaagagaactgactaacctactcttagatttctcatctacgaagttgacaaaATAGCTCATTTACAGGCTTCGTAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198152718 251 + 198332218 AA-ATACATTTTACACTGGCAAAGATCAA--------ATTATTTGTGattatagtgctcatcatttactgagtatataatctctaccagtagtttcactagataatttataa--atgccatttctgtctatccttcaacaggcctctaaattagatgttctatccactttatggatatgagaaatctaagAGAATTGACTAACCCACTCTTTGATTTCTCATCTATGAAGTCGATAAAATAGCTCATTTAGAGGCTTTGTAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113830420 250 + 115148730 AA-ACACATTTTACACTGGCAAAGATCAA--------ATTATTTGTGATTATAGTGCTCATCATTTACTGAGTATATAATCTCTACCAGTAGTTTCATTAGATACTTTATAA--ATGCCATTTCTGTCTACCCTTCAACAGGACTCTAAATTAGATGTTCTATCCACTTTATGGATATGAGAAATCTAAGAGAATTGACTAACCCACTCTTAGATTTCTCATCTAT-AAGTCGATAAAATAGCTCATTTAGAGGCTTTGTAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183734017 251 + 184069350 AA-ATACATTTTACACTAGTAAAGATCAA--------ATTACTTGTGattatagtgctcatcatttactgggtatataatctctaccagtagtttcactagatactttataa--atgtcatttctgtctatcctttaacaggtctctaaattagatgttctatccactttatggatatgagaaatctaagagaattgactaacccactcttagatttctcatctatgaagtggATAAAATAGCTCATTTAGAGGCTTTGTAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189126134 251 + 189454096 AA-ATACATTTTACACTAGCAAAGATCAA--------ATTACTTGTGATTATAGTGCTCATCATTTACTGGGTATATAATCTCTACCAGTAGTTTCACTAGATACTTTATAA--ATGTCATTTCTGTCTATCCTTTAACAGGTCTCTAAATTAGATGTTCTATCCACTTTATGGATATGAGAAATCTAAGAGAATTGACTAACCCACTCTTAGATTTCTCATCTATGAAGTGGATAAAATAGCTCATTTAGAGGCTTTGTAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178544915 251 + 178775436 AA-ATACATTTTACACTAGCAAAGATCAC--------ATTACTTGTGATTATAGTGCTCATcatttactgggtatataatctCTACCAGTAGTTTCACTAGATACTTTATAA--ATGTCATTTCTGTCTATCCTTTAACAGGTCTCTAAATTAGATGTTCTATCCACTTTATGGATATGAGAAATCTAAGAGAATTGACTAACCCACTCTTAGATTTCTCATCTATGAAGTCGATAAAATAGCTCATTTAGAGACTTTGTAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135485874 251 + 135778131 AA-ATACATTTTACACTGGCAAAGATCAA--------ATTACTTGTGATTATAGTGCTCATCATTTACTGGGTATATAATCTCTACCAGTAGTTTCACTAGATACTTTATAA--ACGTCATTTCTATCTATCCTTTAACAGGTTTCTAAATTAGATGTTCTATCCACTTTATGGATATGAGAAATCTAAGAGAATTGACTAACCCACTCTTAGATTTCTCATCTATGAAGTCGATAAAATAGCTCATTTAGAGGCTTTGTAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190591373 258 - 190850796 aaTATACATTTTACACTGGCAAAGATCAAATTATTTGATTATTTGTGATTataatactcattatttattaagtatataatctctgccagtagtttcagtagatactttataa--atgtcatttctatctatctttcaacagacctctaaattagatattctatccactttatggata--agaaacctaagAGAATTGACTAACCCACTCTTAGATTTCTCCTCTATGAAGTCGTTAAAAAAGCTCATTTAGAGGCTTTGTAG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18034814 188 -  59632846 AA-ATAAAGTCTAAAC----AGAGATCaa--------attattaaaaattataataCCTAGGCTTTAGCAAGTACTTTATCTCTTCTAAGATTTTTACTAAACATTTGACAATTAGGTTTTTTTTGTCTATT------caaacgtgtaaaatagatattctacccatttcatagat--gaaaaatctgagaa--------------------------tca------gagtggttaaggaa---------------------
i canFam3.chr16            I 11 C 0
e mm10.chr8                 87729028 4875 - 129401213 I

a score=545911.000000
s hg38.chr4_KI270925v1_alt    359988 170 +    555799 T--------TTCTAAAATATCATATAGCTAGGATTGTAAATTGATCCTGGTACTTTTTGATTTTTTGAGTTAAAGTTCATGCTGAAGCGTGTTGGGTTGACAGGCAT---TCTGAGATTCAGCACAGGGCATAAGCAAAATGGCA-GC-TTTTCCTACTGGGGTAAAGGAGTCAGACCACCAA
s panTro4.chr4             193062600 170 + 193495092 T--------TTCTAAAATATCATATAGCTAGGATTGTAAATTGATCCTGGTACTTTTTGATTTTTTGAGTTAAAGTTTATGCTGAAGTGTGTTGGGTTGACAGGCAT---TCTGAAATTCAGCACAGGGCATAAGCAAAATGGCA-TC-TTTTCCTTCTGGGGTAAAGGAGCCAGACCACCAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198152969 170 + 198332218 T--------TTCTAAAATATCATATAGCTAGGATTGTAAATTCATCCTGGTACTTTTTGATTTTTTGACTTAAAGTTCATGCTGAAGTCTGTTGGGTTGACAGGCAT---TCTTAAATTCAGCATAGGGCATAAGCAAAAAGGCA-TA-TTTTCCTACTGGGGTAAAGGAGCCAGACCACCAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113830670 170 + 115148730 T--------TTCCAAAATATCATATAGCTAGGATTGTAAATTGATCCTGGTACTTTTTGATTTTTTGACTTAAAGTTCATGCTGAAGTGTGTTGGGTTGACAGGCAT---TCTTAAATTCAGCATAGGGCATAAGCAAAATGGCA-TC-TTTTCCTATTGGGGTAAAGGAGCCAGACCACCAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183734268 169 + 184069350 T--------TTGCAAAATATCATATCGCTGGGATTGTAAATTGATCCTAGTACTTTTTGATTTTTTGACTTAAAG-TCATGCTGAAGTGTGCTGGGTTGACAAGCAT---TCTAAAATTCAGCACAAGGCATAAGCAAAGTGGCA-TC-TTTTCCTACTGGGGTAAAGGAGCCAGACCACCAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189126385 169 + 189454096 T--------TTGCAAAATATCATATCGCTGGGATTGTAAATTGATCCTAGTACTTTTTGATTTTTTGACTTAAAG-TCATGCTGAAGTGTGCTGGGTTGACAAGCAT---TCTAAAATTCAGCACAAGGCATAAGCAAAGTGGCA-TC-TTTTCCTACTGGGGTAAAGGAGCCAGACCACCAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178545166 169 + 178775436 T--------TTGCAAAATATCATATCGCTGGGATTGTAAATTGATCCTagtactttttgattttttgacttaaag-tcatGCTGAAGTGTGCTGGGTTGACAAGCAT---TCTAAAATTCAGCACAAGGCATCAGCAAAGTGGCA-TC-TTTTCCTACTGGGGTAAAGGAGCCAGACCACCAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135486125 169 + 135778131 T--------TTGCAAAATATCATATCGCTAGGATTGTAAATTGATCTTGGTACTTTTTGATTTTTTGACTTAAAG-TCATGCTGAAGTGTGCTGGGTTGACAGGCAT---TCTAAAATTCAGCGCAAGGCATAAGCAAAGTGGCA-TC-TTTTCCTACTGGGGTAAAGGAGCCAGACGACCAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190591631 178 - 190850796 TTTGCAAAATTGCAAAATATCATACAGCTAGAATTGGAAATTGATCCTGGTACTTTCTGATCTTTTGAATTAAAGCTCATGCTGAAGTGTATTGGGTTTACAGGTAT---TCTTAAATCCAGCATCAGGCATAAGCAGACTAGCA-TC-TTTGTCTACTGGGGTAAAGGGGCCAGACCATCAA
i calJac3.chr3             C 0 I 144
s mm10.chr8                 87733903 152 - 129401213 T--------TTGCAAACTATCACACAA-TAAAATTGAAATTTGATCCTGG-ACTTT---ATCTTTTAGCTTAAAGTCCGAGTTGAAATGATTTATAATACAGATGAT---TCTCAAACTTAACCTAAGCCACAACAAGTATTGCA-CCATATTCCTA-----GTAAAGGATGCA---------
i mm10.chr8                I 4875 C 0
s canFam3.chr16             18035002 168 -  59632846 t--------ttataaaacatcacatagttggaactggAGTTTGATC-TGGATCTTACCCATCTTTTGAGTTAAGT-TCATGATGAAACGTGTTGGGTTGACTAGCCGACAACTCAAACTCAGCCTAGAGCCCAAGGACCTTGGAACTC-TGTCCCAACTG--GTAAAGGG--CCGACCACTAA
i canFam3.chr16            C 0 C 0

a score=1278639.000000
s hg38.chr4_KI270925v1_alt    360158 382 +    555799 AATAATCGGTTCTTTAAACCTCCTTTCT---GATGACTCACATCCTCAAAACTTTATGAACTCTTAACATG---ATATCGTGTACACTGGAAAAATGCAATGTATATTTTTAAT-----AAAAATGGA-GTGGGTTTTAGG---AGATCTAGAGCAGTCACAGCTGACATCCAAACTG--TTCTATTTCACTCGCAGAGGTTTCCATCTTCCACCACCACGACC---TCCACCTTCCTGCTCTTCACTCCTCCTTACTTTACT-----AATCTAGTTACTGTTTTTCTCTCTTCCAATTCAGACTCAAAGTGACAGGACGGGACAGAATGAGGCAGAAATCACAG--GGTTTGTAAGGCCTGGAGAATGGGGTTCACACAAACCTTTGGACCACTTTTTCTCAGGGGTA
s panTro4.chr4             193062770 382 + 193495092 AATAATCGGTTCTTTAAACCTCCTTTCT---GATGACTCACAACCTCAAAACTTTATGAACTCTTAACATG---ATATCGTGTACACTGGAAAAATGCAATGTATATTTTTAAT-----AAAAATGGA-GTGGGTTTTAGG---AGATCTAGAGCAGTGACAGCTGACATCCAAACTG--TTCTATTTCATGCGAGGAGGTTTCCGTCTTCCACCACCACGACT---TCCACCTTCCTGCTCTTCACTCCTCCTTACTTTACT-----GATCTAGTTACTGTTTTTCTCTCTTCCAATTCAGACTCAAAGTGACAGGACAGGATAGAATGAGGCAGAAATCACAG--GGTTTGTAAGGCCTGGAGAATGGGGTCCACACAAACCTTTGGACCACTTTTTCTCAGGGGTA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198153139 382 + 198332218 AATAATCAGTTCTTTAAACCTCCTTTCT---GATGACTCACATCCTCAAAACTTTATGAACTCTTAACATG---ATATCGTGTACACTGAAAAAATGCAATGTATATTTTTAAT-----AAAAATGGA-GTGGGTTTTAGG---AGATCTAGAGCAGTCACAGCTGACATCCAAACTG--TTCTATTTCATGCACGGAGGTTTCCATCTTCCACCACCACAACC---TCCACCTTCCTGCTCTTCACTCCTCCTTACTTTACT-----GATCTAGTTACTGTTTTTCTCTCTTCTAATTCAGACTCAAAGTGACAGGACGGGACAGAATGAGGCAGAAATCACAG--GGTTTGTACGACCCGGAGAATGGGCTCCATGCAAACCTTTGGACCACTTTTTCTCAGGGGTA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113830840 382 + 115148730 AATAATCAGTTCTTTAAACCTCCTTTCT---GATGACTCACATCCTCAAAACTTTATGAACTCTTAACATG---ATATCGTGTACATGGGAAAAACGCAATGTACATTTTTAAT-----AAAAATGGA-GTGGGTTTTAGG---AGCTCTATAGCAGTCACAGCTGACATCCAAACTG--TTCTATTTCACACACGGAGGTTTCCATCTTCCACCACCACGACC---TCCACCTTCCTGCTCTTCACTCCTCCTTACTTTACT-----GATCTAGTTACTGTTTTTCTCTCTTCCAATTCAGACTCAAAGTGACAGGACTGGACAGAATGAGGCACAAATCACAG--GGTTTGTACGACCCAGAGAATGGGCTCCACGCAAACCTTTGGACCACTTTTTCTCAGGGGTA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183734437 374 + 184069350 AATAATCAGTTCTTTAAA---CCTTTGT---GATGACTCACATCCTTGAAACTTTATGAACTCTTAACATG---ATATCGTGTACACTGGAAAAATACAATGTACATTTTTAAT-----AAAAATGGA-GTGGGTTTTAGG---AGATCTGTAGCAGTCACAGCTGACATCCAAACTG--TTCTATTTCACGCGTGGAGGTTTCCATCTTCCACCACCACGACC---TCCACCTTCCCACTCTTCA---CTCCTTACTTTACT-----GATC-AGTTACCATTTTTCTCTCTTCCAATTC-GATTTAAAGTGACAGGACGGGACAGAATGACATAGAAATCACAG--GGTTTGTGCGACCTGGAAAATGGGGTCCATGCAAACCTCTGGACCACGTTTTCTCAGGGGTA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189126554 374 + 189454096 AATAATCAGTTCTTTAAA---CCTTTGT---GATGACTCACATCCTTGAAACTTTATGAACTCTTAACATG---ATATCGTGTACACTGGAAAAATACAATGTACATTTTTAAT-----AAAAATGGA-GTGGGTTTTAGG---AGATCTGTAGCAGTCACAGCTGACATCCAAACTG--TTCTATTTCACGCGTGGAGGTTTCCATCTTCCACCACCACGACC---TCCACCTTCCCACTCTTCA---CTCCTTATTTTACT-----GATC-AGTTACCATTTTTCTCTCTTCCAATTC-GATTTAAAGTGACAGGACGGGACAGAATGACATAGAAATCACAG--GGTTTGTGCGACCTGGAAAATGGGGTCCATGCAAACCTCTGGACCACGTTTTCTCAGGGGTA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178545335 374 + 178775436 AATAATCAGTTCTTTAAA---CCTTTGT---GATGACTCACATCCTTGAAACTTTATGAACTCTTAACATG---ATATCGTGTACACTGGAAAAAtacaatgtacatttttaat-----aaaaatgga-gtGGGTTTTAGG---AGATCTGTAGCAGTCACAGCTGACATCCAAACTG--TTCTATTTCACGCGTGGAGGCTTCCATCTTCCACCACCACGACC---TCCACCTTCCCGCTCTTCA---CTCCTTACTTTACT-----GATC-AGTtaccatttttctctcttccaattC-GATTTAAAGTGACAGGACGGGACAGAATGACGTAGAAATCACAG--GGTTTGTGCGACCTGGAAAATGGGGTCCATGCAAACCTCTGGACCACGTTTTCTCAGGGGTA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135486294 374 + 135778131 AATAATCAGTTCTTTAAA---CCTTTGT---GATGACTCACATCCTTGAAACTTTATCAACTCTTAACATG---ATATCGTGTACACTGGAAAAATACAATGTACATTTTTAAT-----AAAAATGGA-GTGGGTTTTAGG---AGATCTGTAGCAGTCACAGCTGACATCCAAACTG--TTCTATTTCACGCGTGGAGGTTTCCATCTTCCACCACCACGACC---TCCACCTTCCTGCTCTTCA---CTCCTTACTTTACT-----GATC-AGTTACCATTTTTCTCTCTTCCAATTC-GATTTAAAGTGACAGGACGGGACAGAATGACATAGAAATCACAG--GGTTTGTGCGACCTGGAAAATGGGGTCCACACAAACCTCTGGACCGCGTTTTCTCAGGGGTA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190591953 379 - 190850796 AATAATCAGTTCTTTAAACCTCCTTTCT---GATGGCTCACATCCTCAAAACTTTATCAGCTCTTAACATG---ATATCATGTACACAGGAAAAATACAATGTACATTTTTAAT-----AAAAATGGA-GTGGCTTTTAAG---AGGTATATAGCAGTCACAGCTGACATCCAAATTG--TTTTATTCCACGCCTGGAGATTTCCATCTTCCACCACC---ACC---TCCACCCTCCTGCTCTTCATTCCCCCTTATTTTGCT-----GATCTGGTTACTGCTTTTCTCTCTTCCAATTCAGACTCATGGTGACAGGATAGGAAAGAAAGAGGTAGAAATCACGG--GGTTTGTGTCAGCTGGAGAATGGGGTCTATGCAAACCTTTTAACCACTTTTTCTCAGGGGTA
i calJac3.chr3             I 144 C 0
s mm10.chr8                 87734055 369 - 129401213 ------CAGCTCTCTTAG--TCCTTTCTTCAGACTACTCTCATTTTCAAAA-TTTGCCATCCATCAACATGTAACCATCATGGATACTTGGAGTCTTTGATGTACATTGTTAATTTAAAAAAAATACATGTAGTCTTTAGG---AAACT--------ACACTATTATGAGACAAAATG--TTTGATATCATGT-------TTCCCAGTTTCTTCTACCACAGCG---TTGACCTCCCTGCTCCTTG--CTCCCTTATTTCGAC-----GATATAGTTAGTGTTTTCCTTTATTCAGCTTA-GTCTCAAAGTGATAAGGTAGGACATGAAACAATAGGATTCAGAGAAGATTGGTAAAATCTGAATAGTAGGGCACCAGAAAACTTATCCACCAATTTTGATGAAGGCTC
i mm10.chr8                C 0 I 80
s canFam3.chr16             18035170 385 -  59632846 AATAACCAGTCCATCAATCCTCCCTCTT---GAGGACTCACATCATCAAAAGTGTATCAAATCTTAGTGTA---ATATCATGTATACAAGAAGCATTCAATCTACATTTTCAAT-----AAAAATAGA----GGTTTTAGGAAAAGAACTATAGTAGTAATAGCTGAAGGCCAAACTGTATTCTATCTCATACTTCAAGGTTTCAATCTTCCACCCCCACCACCATTTCTACCTCCCTGCTCTGTGATCTTTCTTATTTCTATTTCTAGATCTAGATACTGCTTTCCTTTCTTCCA-TTCAGACTCAAAGTGACAGAACAGGAAGGGATG-----GAAATCACA---GACTGATGAGACCTGGAAAATGGGGCCCAAGATGACCTTTTGACCCATATTACACAGGGCCA
i canFam3.chr16            C 0 C 0

a score=76482.000000
s hg38.chr4_KI270925v1_alt    360540  43 +    555799 GACTTCATG-----------------------------------------------------------------------CTCAGATGCTGATGTTCTGTG-----------------------------------------------------------------------CTGGACCTGTTTG
s panTro4.chr4             193063152  43 + 193495092 GACTTGATG-----------------------------------------------------------------------CTCAGATGCTGATGTTCTGTG-----------------------------------------------------------------------CTGGACCTGTTTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198153521  43 + 198332218 GACTTGATG-----------------------------------------------------------------------CTTACATGCTGATGTTCTGTG-----------------------------------------------------------------------CTGGACCTGTTTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113831222  43 + 115148730 GACTTGATG-----------------------------------------------------------------------CTCAGATGCTGACGTTTGGTG-----------------------------------------------------------------------CTGGACCTGTTTG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183734811  42 + 184069350 GACTTGATG-----------------------------------------------------------------------CTCAGATGCTGATGTTCTGCG-----------------------------------------------------------------------CTGGGCCT-TTTG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189126928  42 + 189454096 GACTTGATG-----------------------------------------------------------------------CTCAGATGCTGATGTTCTGCG-----------------------------------------------------------------------CTGGGCCT-TTTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178545709 113 + 178775436 GACTTGATGCTCAGATGCTGATGTTCTGTGCTGGACCTGTTTGGGTTTCTCCTCCTCATTTCTCAGGGGTAGACTTGATGCTCAGATGCTGATGTTCTGCG-----------------------------------------------------------------------CTGGGCCT-TTTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135486668 113 + 135778131 GACTTGATG-----------------------------------------------------------------------CTCAGATGCTGATGTTCTGCGCTGGGCCTGTTTGGGTTCCTCCTCCTCATTTCTCAGGGGTCGACTTGATGCTCAGATGCTGATGTTCTGCGCTGGGCCT-TTTG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190592332  43 - 190850796 GACTTGATC-----------------------------------------------------------------------CTCAGATGCAGATTTTATGTG-----------------------------------------------------------------------CTGGACCTATTTA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18035555  40 -  59632846 GACCTCCTT-----------------------------------------------------------------------GTTAGGTGC---TTTTCTGTG-----------------------------------------------------------------------TTGGATCTTTCTT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87734424  80 - 129401213 I

a score=7016.000000
s hg38.chr4_KI270925v1_alt    360583 3 +    555799 GGT
s panTro4.chr4             193063195 3 + 193495092 GGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198153564 3 + 198332218 GGT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113831265 3 + 115148730 GGT
i nomLeu3.chr7b            C 0 I 140
s rheMac3.chr5             183734853 3 + 184069350 GGT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189126970 3 + 189454096 GGT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178545822 3 + 178775436 GGT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135486781 3 + 135778131 GGT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190592375 1 - 190850796 G--
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87734504 2 - 129401213 -GT
i mm10.chr8                I 80 I 1
s canFam3.chr16             18035595 3 -  59632846 AGT
i canFam3.chr16            C 0 C 0

a score=450490.000000
s hg38.chr4_KI270925v1_alt    360586 117 +    555799 TCCTCCTCCTCATTCACTCTTGCTCCTG----AGCATCACCTGCTCTGACTTGTAAACGTTC-TTCTAA-CA----TCCCCTAACACAAAGGAGTTAACTGAAGCTCTGAGAGGCCTGGAGGTCAGT
s panTro4.chr4             193063198 117 + 193495092 TCCTCCTCCCCATTCACTCTTGCTCCTG----AGCATCACCTGCTCTGACTTGTAAACGTTC-TTCTAA-CA----TCCCCTAACACAAAGGAGTTAACTGAAGCTCTGAGAGGCCTGGAGGTCAGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198153567 117 + 198332218 TCCTCCCCCTCATTCACTCTTGCTCCTG----AGCATCACCTGCTCTGACTTGTAAAAGTTG-TTCTAA-CA----TTCCCTAACACAAAGGAGTTAACCGAAGCTCTGAGAGGCCTGGAGGTGAGT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113831408 117 + 115148730 TCCTCCTCCTCATTCACTCTTGCTTCTG----AGCATCACCTGCTCTGACTTGTAAACGTTG-TTCTAA-CA----TCCCCTAACACAAAGGAGTTAACCGAAGCTCTGAGAGGCCTGGAGGTCAGT
i nomLeu3.chr7b            I 140 C 0
s rheMac3.chr5             183734856 117 + 184069350 TCCTCCTCCTCATTCGCTCTTGCTCCTA----AGCATCACCTGCTCTGACTTGTAATCGTTG-TTCTAA-CA----TCCCCTAACATAAAGGAGTTAACTGAAGCTCTGAGAGGCCTGGAGGTCAGT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189126973 117 + 189454096 TCCTCCTCCTCATTCGCTCTTGCTCCTA----AGCATCACCTGCTCTGACTTGTAATCGTTG-TTCTAA-CA----TCCCCTAACATAAAGGAGTTAACTGAAGCTCTGAGAGGCCTGGAGGTCAGT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178545825 117 + 178775436 TCCTCCTCCTCATTCGCTCTTGCTCCTA----AGCATCACCTGCTCTGACTTGTAATCGTTG-TTCTAA-CA----TCCCCTAACACAAAGGAGTTAACTGAAGCTCTGAGAGGCCTGGAGGTCAGT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135486784 117 + 135778131 TCCTCCTCCTCATTCGCTCTTGCTCCTA----AGCATCACCTGCTCTGACTTGTAATCGTTG-TTCTAA-CA----TCCCCTAACACAAAGGAGTTAACTGAAGCTCTGAGAGGCCTGGAGGTCAGT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190592376 119 - 190850796 --TTCCTCTTCAGTCACGCTTGCACCTA----AGCATCACCTGCTCTGACTTGTAAACATTG-TTCTAA-CATTTGTCCCCTAACACAAAGGAGTTAACTGAAGCTCTGAGAGGCCTGGAGGTCAGC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87734507 119 - 129401213 CCTTCCTCTTCAGTTATACTTGCTTCTAT---AGCATCATGTTGTCTGACTTTTTAACACAGCTTCTAACCA----TCTATTAATGCAAAAGAA-TAACTGAATCCTTGAGAAACTTGGAGGTCAGT
i mm10.chr8                I 1 C 0
s canFam3.chr16             18035598 118 -  59632846 TCCTCCTTTTCTTTCA--CTGGCTCCTATCAAAGGGTCACCTGCTCTGACTT-TAAACACTGCTTCTAT-CA----TCTCGTAACACAAAGGAA-CAACTGAAGCCCTGAAAGGGTTGGAGATCAGT
i canFam3.chr16            C 0 C 0

a score=340205.000000
s hg38.chr4_KI270925v1_alt    360703 108 +    555799 CATGGACCTTCACATTATTTGACTTTAAAC-AAATCTTGAAAGATTCATCCCCCTCAACATGGCACTTGTGTGCATGTAGAGGCATTCATCT-CACACCACTACAAA---AGA
s panTro4.chr4             193063315 108 + 193495092 CATGGACCTTCACATTATTTGACTTTAAAC-AAATCTTGAAAGATTCATCCCCCTCAACATGGCACTTGTGTGCATGTAGAGGCATTCATCT-CACACCACTACAAA---AGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198153684 108 + 198332218 CACGGACCTTCACCTTATTTGACTTTAAAC-AAATCTTGAAAGATTCATCCCCCTCAACATGGCACTTGTGTGCATGTAGAGGCATTCATCT-CACACCACTACAAA---AGA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113831525 108 + 115148730 CATGGACCTTCACATTATTTGACTTTAAAC-AAATCTTGAAAGATTCATCCCCCTCAACATGGCACCTGTGTGCATGTAGAGGCATTCATCT-CACGCCATTACAAA---AGA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183734973 107 + 184069350 CGTGGACCTTCACATTATTTGACTTTAAAC-AAATCTTGAAAGATTCATCCCCGTC-ACATGGCACCTGTGTGCATGGAGAGGCATTCACCT-CACGCCAGTACAAA---AGC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189127090 107 + 189454096 CGTGGACCTTCACATTATTTGACTTTAAAC-AAATCTTGAAAGATTCATCCCCGTC-ACATGGCACCTGTGTGCATGGAGAGGCATTCACCT-CACGCCAGTACAAA---AGC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178545942 110 + 178775436 CGTGGACCTTCACATTATTTGACTTTAAAC-AAATCTTGAAAGATTCAACCCTGTC-ACATGGCACCTGTGTGCATGGAGAGGCATTCACCT-CACACCAGtacaaaagcagc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135486901 107 + 135778131 CGTGGACCTTCATATTATTTGACTTTAAAC-AAATCTTGAAAGATTCATCCCGGTC-ACATGGCACCTGTGTGCATGGAAAGGCATTCATCT-CACGCCAGTACAAA---AGC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190592495 108 - 190850796 CATGAAACTTCACATTATTTGACTTAAAAC-AAATCTTGAAAGAATCATCCCCCTCAACATGGCACCTGTGTGCAGGCAGAAGCATTCACCT-CATACCACTACAAA---AGA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18035716 110 -  59632846 GATAGATACTTCAATCATTTGACTTTAAACTAATTCTTAAGAAATCCATCACCTTCAACATGGCATCTACATACACACAGAAAAATGCATCCACACATCACCACAAA---AGC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87734626   0 - 129401213 C

a score=498150.000000
s hg38.chr4_KI270925v1_alt    360811 165 +    555799 AGCAGCAGTGTTTGCCAGAAATCATGGGATTCCTCTTTTTTC-TCCGGGCTCCGGGTCTGAATTGCCAGGCCGGCTTTGTCAGGAGTGATA------AATG-TAAGAGTCATGGCTGGGTGGGGCTG--GATTGTGCT-ATGTGTGGCACATAAGGGATGAAAGTGAGAGATATTT
s panTro4.chr4             193063423 165 + 193495092 AGCAGTAGTATTTGCCAGAAATCATGGGATTCCTCTCTTTTC-CCCGGGCTCCAGGTCTGAATTGCCTGGCCGGCTTTGTCAGGAGTGATA------TATG-TAAGAGTCATGGCTGGGTGGGGCTG--GATTGTGCT-ATGTGTGGCACATAAGGGATGAAAGTGAGAGATATTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198153792 165 + 198332218 AGCAGCAGCGTTTGCCAGAAATTGCAGGATTCCTCTCCATTC-CCCGGGCTCCGGGTCTGAATTCCCAGGCCGGCTTTGTCAGGAATGATA------TATG-TAAGAGTTATGGCTGGGTGGGGCTG--GATTGTGCT-ATGTGTGGCACATAAGGGATGAAAGTGAGAGATATTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113831633 165 + 115148730 AGCAGCAGCGTTTGCCAGAAATCGCGGGATTCTTCTCCTTTT-CCCGGGCTCCGGGTCTGAATTGCCAGGCCAGCTGTGTCAGGATTGATA------TATG-TAAGAGTCATGGCTGGGTGGGGCTG--GATTGTGCT-ATGTATAGCACATAAGGGATGAAAGTGAGAGATATTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183735080 161 + 184069350 AGCAGCAGCGTTTGCCAGAAATCGTGGGATTCCTCTCCTCCC-CGCGGGTTCCGGGTCTGAATTGCCAGGCCTGCTTTGTCAGGAGTGATA------CATG-TAAGAGTCATGGCTGGGTGGGGCTG--GATTGTGCT-ATG----GCACGTAAGGGATGAAAGTGAGAGATATTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189127197 161 + 189454096 AGCAGCAGCGTTTGCCAGAAATCGTGGGATTCCTCTCCTCCC-CGCGGGTTCCGGGTCTGAATTGCCAGGCCTGCTTTGTCAGGAGTGATA------CATG-TAAGAGTCATGGCTGGGTGGGGCTG--GATTGTGCT-ATG----GCACGTAAGGGATGAAAGTGAGAGATATTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178546052 161 + 178775436 agcagcagcgttTGCCAGAAATCATGGGATTCCTCTCCTTCC-CGCGGGTTCCGGGTCTGAATTGCCAGGCCTGCTTTGTCAGGAGTGATA------TATG-TAAGAGTCATGGCTGGGTGGGGCTG--GATTGTGCT-ATG----GCACGTAAGGGATGAAAGTGAGAGATATTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135487008 161 + 135778131 AGCAGCAGCGTTTGCCAGAAATCGTGGGATTCCTCTCCTTCC-CGTGGGTTCCGGGTCTGAACTGCCAGGCCTGCTTTGTCAGGAGTGATA------TATG-TAAGAGTCATGGCTGGGCGGGGCTG--GGTTGTGCT-ATG----GCACGTAAGGGATGAAAGTGAGAGATACTT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190592603 157 - 190850796 AGCAG----------CAGAAATCGAGGGATTCCCCTCCTTTC-TCTGGGCTCCAGGTCTGAATTGCCAGGCCTGCCGGGTCAGCAGTGATGATGTGCTACG-TAAGAATGATAGCTGGGTGGGGCTG--GACTGTGCT-ATG----GCACATAAGGGATGAAAGTGAGAGATATTT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87734626 118 - 129401213 AGCAGCAGCCTTTACCAGAACCCAGAGGATTCTGC-CTTCGT-TGTGGACTCCAGA---AGAATGCGGGATCCACGTCATCTGGAGTGATA-----TTATGTTAAGAAGCAAAGCT------GGCTG--GATTGGG----------------------------------------
i mm10.chr8                C 0 C 0
s canFam3.chr16             18035826 167 -  59632846 AGTAGTAGCCCTTGTCATGGATCTTGTGCCTCCTCACCTTTCTCCTTAGATGCAAA---GGATCAGTAGGCCTACTTTGTCAGGGATGACGTTGTGTTATA-TAAGAATCATAGTTGGGTGGGGCTGCTGGATGTGTTAATG----GTTTATAA-AGATGAAAATGGGAGGTATTT
i canFam3.chr16            C 0 I 223

a score=1159086.000000
s hg38.chr4_KI270925v1_alt    360976 358 +    555799 CCTAATTACAAATGTATGTTCTTTATTCTTCAAAGTTTGGATTCACACCTCTCTA---TTCCATTTTTCT--GCACAAAATCTCACTGTATCATTAATGGATTTGTCCAGTGCATTGATAATATCATAATCTATCCACTCTAACCTGATTAAGCATGCACTTG---TCATTTTAAAAAATGAGGAAACTGGCATACATGTTTCAGCAAAGAATTTGCCACACCTGCATTGTGTAT-GCAGCTGGTTTAATTACAGACATAATGTATTT--AGCAT-AGTATGT--ACGAAGCTGC--ATCACACCTGAACATCCCAT-TTGATGTATTTCCTGAGACCTATTTGCCACTG-TTCTTTCCTTTGTGACTGTCCTTAC
s panTro4.chr4             193063588 358 + 193495092 CTTAATTACAAATGTATGTTCTTTATTCTTCAAAGTTTGGATTCACACCTCTCTA---TTCCATTTTTCT--GCACAAAATCTCACTGTATCATTAATGGATTTGTCCAGTGCATTGATAATATCATAATCTATCCACTCTAACCTGATTAAGCATGCCCTTG---TCATTTTAAAAAATGAGGAAACTGGCATACATGTTTCAGCAAAGAATTTGCCACACCTGCATTGTGTAT-GCAGCTGGTTTAATTACAGACATAATGTATTT--AGCAT-AGTATGT--ACAAAGCTGC--ATCACACCTGAACATCTCAT-TTGATATATTTCCTGAGACCTATTTGCTACTG-TTCTTTCCTTTGTGACTGTCCTTAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198153957 357 + 198332218 CTTAATTACAAATGTATGTTCTCTATTCTTCAAAGTTTGGATTCACACCTCTCAA---TTCCATTTTT-T--GCACAAAATCTCACTGTATCATTAATGGATTTGTCCAGTGCATTGATAATATCATAATCTATCAACTCTAACCTGATTAAGCATGCACTTG---TCATTTTAAAAAATGAGAAAACTGGCATACATGCTTCAGCAAAGAATTTGCCACACCTGCATTGTGTAT-GGAGCTGGTTTAATTACAGACATAATGTATTT--AGCAT-AGTACAT--ACAAAGCTGC--ATCACACCTGAACATCTCAT-TTGATATATTTCCTGAGACCTATTTGCTACTG-TTCTTTCCTTTGTGACTATCCTTAC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113831798 358 + 115148730 CTTCATTACAAATGTATGTTCTTTATTCTTCAAAGTTTGGATTCACACCTCTCAA---TTCCATTTTTTT--GCACAAAATCTCACTGTACCATTAATGGATTTGTCCAGTGCGTTGATAATATCATAATCTATCAACTCTAACCTGATTAAGCATGCACTTG---TCATTTTAAAAAATGAGAAAACTGGCATACATTCTTCAGCAAAAACTTTACCACACCTGCACTGTGTAT-GGAGCTGGTTTAATTACAGACATAATGTATTT--AGCAT-AGTATGT--ACAAAGCTGC--ATCACATCTGAACATCTGAT-TTGATATATTTCCTGAGACCTATTTGCTACTG-TTCTTTCCTTTGTGACAGTCCTTAC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183735241 359 + 184069350 CTTAATTACAAATGTATGTTCTTTATTCTTCTAAGTTTGGATTCACACCCCTCAA---TTCCATTTTTTTTGGCACAAAATCTCACTGTATCATTAATGGA-TTGTCCAGTGCATTGACAATATCATAATCTATCAACTCTAACCTGACTAAGCATGCACTTG---TTATTTTAAAAAATGAGAAAACTGGCATACATGCTTCAGCCAAGAATTTGCCACACCTGCATTGTGTAC-GCAGCTGGTTTAATTATAGACATAATGTGTTT--AGCAT-AGTATGT--ACAAAGCGGC--ATCACATCTGAACATCTCAT-TGGATGTATTTCCTGAGACCTGTTTGCTACTG-TTCTTTCCTTTGTGACTGTCCTTAC
i rheMac3.chr5             C 0 I 184
s macFas5.chr5             189127358 359 + 189454096 TTTAATTACAAATGTATGTTCTTTATTCTTCTAAGTTTGGATTCACACCCCTCAA---TTCCATTTTTTTTGGCACAAAATCTCACTGTATCATTAATGGA-TTGTCCAGTGCATTGACAATATCATAATCTATCAACTCTAACCTGACTAAGCATGCACTTG---TTATTTTAAAAAATGAGAAAACTGGCATACATGCTTCAGCCAAGAATTTGCCACACCTGCATTGTGTAC-GCAGCTGGTTTAATTATAGACATAATGTGTTT--AGCAT-AGTATGT--ACAAAGCGGC--ATCACATCTGAACATCTCAT-TGGATGTATTTCCTGAGACCTGTTTGCTACTG-TTCTTTCCTTTGTGACTGTCCTTAC
i macFas5.chr5             C 0 I 18
s papAnu2.chr5             178546213 359 + 178775436 CTTAATTACAAATGTATGTTCTTTATTCTTCTAAGTTTGGATTCACACCCctcaa---ttccatttttttttgcaCAAAATCTCACTGTATCATTAATGGA-TTGTCCAGTGCATTGACAATATCATAATCTATCAACTCTAACCTGATTAAGCATGcacttg---tcattttaaaaaatgagaaaactggcaTACATGCTTCAGCCAAGAATTTGCCACACCTGCATTGTGTAC-GCAGCTGGTTTAATTATAGACATAATGTGCTT--AGCAT-AGTATGT--ACGAAGCTGC--ATCACATCTGAACATCTCAT-TGGATGTATTTCCTGAGACCTGTTTGCTACTG-TTCTTTCCTTTGTGACTGTCCTTAC
i papAnu2.chr5             C 0 I 18
s chlSab2.chr7             135487169 360 + 135778131 CTTAATTACAAATGTATGTTCTTTATTCTTCTAAGTTTGGATTCACACACCTCAA---TTCCATTTTTTTTTGCACAAAATCTCACCGTATCATTAATGGATTTGTACAGTGCATTGACAATATCATAATCTATCAACTCTAACCTGATTAAGCATGCACTTG---TCATTTTAAAAAATGGGAAAACTGGCATACATGCTTCAGCCAAGAATTTGCCACACCTGCATTGTGTAC-GCAGCTGGTTTAATTATAGACATAATGTGTTT--AGCAT-AGTATGT--ACAAAGCTGC--ATCACATCTGAACATCTCAT-TTGATGTATTTCCTGAGACCTGTTTGCTACTG-TTCTTTTCTTTGTGACTGTCCTTAC
i chlSab2.chr7             C 0 I 184
s calJac3.chr3             190592760 358 - 190850796 CTTAATTAAAAGTATATATCCTTTATGCTTCAAAGTTTGGACTCACATTTCTTAA---TTCCATTTTT----GCACAAAATCTTACAGTGTCATTAATGGATTTGCCCAGTGCATTGATAGTATCATAATCTATCAACTCTAACCTGATTAAACATGCACTTG---CCATTTAAAAAAATTAGAAAACTGTTGTACATGCTTCAGCAAAGTATTTCCCACACCTGCAGTGTGTATGGGAGCTGGTTTAGTTAGAGGCATAAGGTATTT--AGCATGGGTATAA--ACAAAGCTTC--ATTGCATCTGAACATCTCAT-TTGATAGA-TTCCTGAGACCTATTTGCTACTGATTCTTTCCTTTGTGACTGTCTTTAC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87734744 302 - 129401213 ------TATAAATGTCTGTTGTC---ACTTCAAAATCT-AATTCGTTTCTCTAAT---TCACACTTTT----GAATAAATTATCAATGCAACATCAGGGTTTCTACC---TATATTGTTATTATGAT--TCAATGAACTCTTA--TGATTAAATATGATTGTGTTTTTATTTT------TCAGAAAA----------------GGCAAAGAGTTTGCTATATTAACAGTGTATGA-GCAGCTAGCTTTACTTCAGAC-----------------T-GTTACGTCAACAAAGCTACTAATGGTTTTT----ATTTCAT-TAGA---ATTCTTTAAGATGCATTTGCCACTG-TTCTGACTTTTGCACATGTCACTGA
i mm10.chr8                C 0 C 0
s canFam3.chr16             18036216 330 -  59632846 TTTATTTACAAAGGTTTGTTCTTTATTCTCCAGAATCTGTGTTCACACCCCTCAGATTCTTCATATCTTT--GCGCAAAATCTCAC------------------------TGCATTGATGTCATAAT--TCCATTGACTTTAATCTGATTTTATATGCACTTA---TCTTTTAAAAAAAAGAGTA-------GTTTTTTTTCCAGCAAAGAATTTACCATGCCTACAGTATATAT-GGAACTAGTTTTCTTTTAGACATAATGTATTTAAAGGAT-AGTGTCT--ATAAATCTGT--GTTGCATC-ATGCATTTCATATAGATTAATGTCCTCAGCTTGATTTGATATTG-TTCTTACCTTTGTTGCCATCACTGC
i canFam3.chr16            I 223 C 0

a score=20575.000000
s hg38.chr4_KI270925v1_alt    361334  59 +    555799 AGAAT---------------------------------------------------------------------------------TA--ATAT-TTTGATAACTATTA-----TATAATT---------------AATTATCCTTCAGGACCTCATTGAAAC
s panTro4.chr4             193063946  59 + 193495092 AGaat---------------------------------------------------------------------------------ta--atat-ttttataactatta-----tataatt---------------aattataCTTTAGGACCTAATTGAAAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198154314  59 + 198332218 AGAAT---------------------------------------------------------------------------------TA--ATAT-TTTTATTACTATTA-----GAGAATT---------------AATTATACTTTAGCACCTAATTGAAAC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113832156  59 + 115148730 AGAAT---------------------------------------------------------------------------------TA--ATAT-TTTTATTACTGTTA-----GAGAATT---------------AATTATACTTTAGCACCTAATTGAAAC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189127735 115 + 189454096 AGAATATTTTTATTAATTAGTAATT---TACCTAATTACTATTTTATAT----AGTTTTA-------------------TTAATAGTA--ATATATCTAATTACTATTA-----GAGAATT---------------AATTATATTTCAGCGCCTAGCTGAAAC
i macFas5.chr5             I 18 C 0
s papAnu2.chr5             178546590 115 + 178775436 agaatatttttattaattagtaatt---tacctaattactattttatct----agtttta-------------------ttaatagta--atatatCTAATTACTATTA-----GAGAATT---------------AATTATACTTCAGCGCCTAGCTGAAAC
i papAnu2.chr5             I 18 C 0
s calJac3.chr3             190593118  43 - 190850796 AGAAT---------------------------------------------------------------------------------TA--CTAT-TTTGATTACTA------------------------------------AGTTTAGCACCTAATTGAAAC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87735046 150 - 129401213 AGTAT------------TAATGTTTTTGTACTGAGGGGATAAAGCATAGTAAAAATTTTAAACTCTTCTTTCTTCCTTTTTAAAATTAAGATAT-CTTTTTTAATGTTAACATTAATAATTTTATGAAAACCAGAAAATTAAAAGTCCATCCCAAATGAAAAC
i mm10.chr8                C 0 C 0
s canFam3.chr16             18036546  37 -  59632846 AGAAT---------------------------------------------------------------------------------TA--ATAT-TTTTGTCATTATTA-----GAGAATC-------------------------------------AAAAC
i canFam3.chr16            C 0 C 0
e chlSab2.chr7             135487529 184 + 135778131 I
e rheMac3.chr5             183735600 184 + 184069350 I

a score=1044312.000000
s hg38.chr4_KI270925v1_alt    361393 351 +    555799  
s panTro4.chr4             193064005 351 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198154373 351 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113832215 351 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183735784 403 + 184069350  
i rheMac3.chr5             I 184 C 0
s macFas5.chr5             189127850 462 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178546705 398 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135487713 347 + 135778131  
i chlSab2.chr7             I 184 C 0
s calJac3.chr3             190593161 345 - 190850796  
i calJac3.chr3             C 0 I 148
s mm10.chr8                 87735196 422 - 129401213  
i mm10.chr8                C 0 C 0
s canFam3.chr16             18036583 343 -  59632846  
i canFam3.chr16            C 0 C 0

a score=3290570.000000
s hg38.chr4_KI270925v1_alt    361744 863 +    555799  
s panTro4.chr4             193064356 863 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198154724 859 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113832566 857 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183736187 860 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189128312 860 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178547103 839 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135488060 854 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190593654 856 - 190850796  
i calJac3.chr3             I 148 C 0
s mm10.chr8                 87735618 843 - 129401213  
i mm10.chr8                C 0 C 0
s canFam3.chr16             18036926 839 -  59632846  
i canFam3.chr16            C 0 I 338

a score=195852.000000
s hg38.chr4_KI270925v1_alt    362607 61 +    555799 TATGAGTAATATTCACAATCTCTAGTTGGAAGAGGTAGTGTTTTCTCAGAAATGATGCATT
s panTro4.chr4             193065219 61 + 193495092 TATAAGTAATATTCACAATCTCTAGTTGGAAGAGGTAGTGTTTTCTCAGAAATGATGCATT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198155583 61 + 198332218 TATGAGTAATATTCACAAACACCGGTTGGAAGAGGTAGTGTTTTCTCAGAAATGATGCATT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113833423 61 + 115148730 TATGAGTAATATTCACAAACACCAGTTGGAAGAGGTAGTGTTTTCTCAGAAGTGATGCATT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183737047 61 + 184069350 TATGAGTAATATTCACAAACACCATTTGGAAGAGGTAATATTTTCTCAGAAATGGTGCATT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189129172 61 + 189454096 TATGAGTAATATTCACAAACACCATTTGGAAGAGGTAGTATTTTCTCAGAAATGGTGCATT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178547942 61 + 178775436 TATGAGTAATATTCACAAACACCATTTGGAAGAGgtagtattttctcagaaatggtGCATT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135488914 61 + 135778131 TATGAGTAATATTCACAAACACCATTTGGGAGAGGTAGTATTTTCTCAGAAATGGTGCATT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190594510 61 - 190850796 TATGAGTAATACTCACAAATAACATTTGGAAAAGGTAGAATTTTCCCAGAAATGATGCATT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87736461 59 - 129401213 -ATGGGAAATGTTCATAG-CAGCATTTGAAGAATGTGATATTTTCTAGAAAATGGTACTTT
i mm10.chr8                C 0 I 428
e canFam3.chr16             18037765 338 -  59632846 I

a score=255580.000000
s hg38.chr4_KI270925v1_alt    362668 74 +    555799 CCTGGAGCAAGGT---CATTTTGTGTTT-------GGTTTGTTAAATATCTATTTCCATTTTGACAAACCATTGGAAAAGCCCA
s panTro4.chr4             193065280 74 + 193495092 CCTGGAGCAAGGT---CATTTTGTGTTT-------GGTTTGTTAAATATCTATTTCCATTTTGACAAACCATTGGAAAAGCCCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198155644 74 + 198332218 CCTGGAGCAAGGT---CATTTTGTGTTT-------GGTTTGTTAAATATCTATTTCCATTTTGACAAACCACTGGAAAAGCTCA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113833484 74 + 115148730 CCTGGAGAAAGGT---CATTTTGTGTTT-------GGTTTGTTAAATATCTATTTCCATTTTGACAAACCACTGGAAAAGCCCA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183737108 74 + 184069350 CCTGGAGCAAGGT---CATTCTGTGTTT-------GGTTTGTTAGATATCTATTTCCATTTTGACAAACCACTGGAAAAGCCCA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189129233 74 + 189454096 CCTGGAGCAAGGT---CATTCTGTGTTT-------GGTTTGTTAGACATCTATTTCCATTTTGACAAACCACTGGAAAAGCCCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178548003 74 + 178775436 CCTGGAGCAAGGT---CATTCTGTGTTT-------GGTTTGTTAAATATCTATTTCCATTCTGACAAACCACTGGAAAAGCCCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135488975 74 + 135778131 CCTGGAGCAAGGT---CATTCTGTGTTT-------GGTTTGTTAAATATCTATTTTTATTCTGACAAACCACTGGAAAAGCCCA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190594571 73 - 190850796 CCTGGAGCAAGCT---TATTTTGTGTTT-------GGTTTGTTAAATATCTATTTCCATTTTGAC-AACCACTGGAAAAGCCCC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87736948 84 - 129401213 CCTGGAGCAAATTTTGCTTTTTGTGTTGCTTTTCAGATATTTCAGATATTTATTTCCACTTTGATAAATCATTGTAAAGACTCA
i mm10.chr8                I 428 I 482
e canFam3.chr16             18037765 338 -  59632846 I

a score=286642.000000
s hg38.chr4_KI270925v1_alt    362742 97 +    555799 GCTTCACAAGGACTCTCCATGAAAGCGATCACAAAAAAGAACACCCATAACACAAAATCAAAACAAGGGTGGTCTGGGCTTCA-ATTAAAGACTCATT
s panTro4.chr4             193065354 98 + 193495092 GCTTCACAAGGACTCTCCATGAAAGTGATCACACAAAAGAACACCCATAACACAAAATCAAAACAAGGGTGGTCCAGGCTTCACATTAAAGACTCATT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198155718 98 + 198332218 GCTTCACAAGAACTCTCCATGAGAGCGATCACGTAAAGGAACACCCATAACACAAAATCAAAACAAGGGTGGTCCAGGCTTCACATTAAAGACTCATT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113833558 98 + 115148730 GCTTCACAAGGACTCTTCATGAGAGTGATcacacaaaacaacacccaaaacacaaaatcaaaacaAGGGTGGTCCGGGCTTCACATTAAAGACTCATT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183737182 98 + 184069350 GCCTCACAAGGACTCTCCATGTGGGCGACCACACAAAGGGACACCCATAACACAAAATCAAAACAAGGGTGGTCCGGGCTTCACATTAAAGACTCATT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189129307 98 + 189454096 GCCTCACAAGGACTCTCCATGTGGGCGACCACACAAAGGGACACCCATAACACAAAATCAAAACAAGGGTGGTCCGGGCTTCACATTAAAGACTCATT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178548077 98 + 178775436 GCCTCACAAGGACTCTCCATGTGGGCGACCACACAAAGGGACACCCATaacacaaaatcaaaacaagaGTGGTCCGGGCTTCACATTAAAGACTCATt
i papAnu2.chr5             C 0 I 333
s chlSab2.chr7             135489049 98 + 135778131 GCCTCACAAGGACTCTCCATGTGGGCGATCACACAAAGGGACACCCATAACACAAAATCAAAACAAGGGTGGTCCGGGCTTCACATTAAAGACTCATT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190594644 98 - 190850796 GTTTCACAAGGACTATCCGTGTGAGCGATCATACAAAAGAACACCCACCACACAAAAGCAAAACAAAAGTGGTCCAGGCTTCACATTAAAGACTCATT
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87737032 482 - 129401213 I
e canFam3.chr16             18037765 338 -  59632846 I

a score=187732.000000
s hg38.chr4_KI270925v1_alt    362839 65 +    555799 ACCAAGTTTTCTTAGAAGAGATAAGGAACACAAAGTTACTTTTATGTGATGGAAAACAGAGAGAA
s panTro4.chr4             193065452 65 + 193495092 ACCAAGTTTTCTTAGAAGAGATAGAGAACACAAAGTTACTTTTATGTGATGGAAAACAGAGAGAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198155816 65 + 198332218 ACCAAGTTTTCTTAGAAGAGATAAAGAACACAAAGTTACTTTTATGTGATGGAAAACAGAGAGAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113833656 65 + 115148730 ACCAAGTTTTCTTAGCAGAGATGAAGAACACAAAGTTACTTTTATGTGATGGAAAACAGAGAGAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183737280 65 + 184069350 ACCAAGTTTTCTTAGAAGAGATAAAGACCACAAAGTTACTTTTATGTGATGAAAAACAGAGAGAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189129405 65 + 189454096 ACCAAGTTTTCTTAGAAGAGATAAAGACCACAAAGTTACTTTTATGTGATGAAAAACAGAGAGAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178548508 65 + 178775436 accaagTTTTCTTAGAAGAGATAAAGACCACAAAGTTACTTTTATGTgatgaaaaccagagagaa
i papAnu2.chr5             I 333 C 0
s chlSab2.chr7             135489147 65 + 135778131 ACCAAGTTTTCTTAGAAGAGATAAAGATCACAAAGCTACTTTTATGTGATGAAAAACAGTGAGAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190594742 63 - 190850796 GCC--GTTTTCTTAGCAGAGATAAAGAAAACGAGGTTACTTTTATATTATGAGAAGCAGAGAGAA
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87737032 482 - 129401213 I
e canFam3.chr16             18037765 338 -  59632846 I

a score=475632.000000
s hg38.chr4_KI270925v1_alt    362904 155 +    555799 AGAGTAAATGGAACAATAACCGTTAGGAAACAGCAGTGAGAAACAAGCTG-TGGAAAAAAATGAATGGAATTATGTTTT-GTTTGCTATTGATTTCCTATCCTGATATCAGAAAATATGGGAAAGAACAAAGCACA---TTTTTTGAGACAAATAGAACA
s panTro4.chr4             193065517 155 + 193495092 AGAGTAAATGGAACAATAAGCGTTAGGAAACAGCAGTGAAAAACAAGCTG-TGGAAAAAAATGAATGGAATTATGTTTT-GTTTGCTATTGATTTCCTATCCTGATATCAGAAAATATGGGAAAGAACAAAGCACA---TTTTTTGAGACAAATAGAACA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198155881 155 + 198332218 AGAGTAAATGGAACAATAAGTGTTAGGAAACAGCAGTGAAAAACACGCTG-TGGAAAAAAATGAATGGAATTATGTTTT-GTTTGGTATTGATTTCCTATCTTGATATCAGAAAATATGGGAAAGAACAAAGCACA---TTTTTTGAGACAAATAGAACA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113833721 156 + 115148730 AGGGTAAATGGAACAATAAGTGTTAGGAAACAGCAGTGAAAACCAAGCTG-TGGAAAAAAATGAATGGAATTATGTTTT-GCTTGGTATTGATTTCCTATCCTGATATCAGAAAATATGCGAAAGAACAAAGCACA--TTTTTTTGAGACAAATAGAACA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183737345 157 + 184069350 AGAGTAAATGGAACAATAAGTGTTAGGAAACAACAGTGAAAAACAAGCTG-TGGAAAAAAATGAATGGAATTATGTTTT-GCTTGGTATTGATTTCCTACACTGATATCAGAAAATACGGGAAAGAACAAAGTACA-TTTTTTTTGAGGCAAATAGAACA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189129470 157 + 189454096 AGAGTAAATGGAACAATAAGTGTTAGGAAACAACAGTGAAAAACAAGCTG-TGGAAAAAAATGAATGGAATTATGTTTT-GCTTGGTATTGATTTCCTACACTGATATCAGAAAATACGGGAAAGAACAAAGTACA-TTTTTTTTGAGGCAAATAGAACA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178548573 158 + 178775436 agagTAAATGGAACAATAAGTGTTAGGAAACAACAGTGAAAAACAAgctg-tggaaaaaaatgaatggaattaTGTTTT-GCTTGGTATTGATTTCCCATACTGATATCAGAAAATACGGGAAAGaacaaagtacatttttttttgaggcaaataGAACA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135489212 158 + 135778131 AGAGTAAATGGAACAATAAGTGTTAGGAAACAACAGTGAAAAACAAGCTG-TGGAGAAAAATGAATGGAATTATGTTTT-GCTTGGTATTGATTTCCTACACTGATATCAGAAAATACAGGAAACAACAAAGTACATTTTTTTTTGAGGCAAATAGAACA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190594805 150 - 190850796 AGAGGAAATGGAAAAA-AAGTGCTAGGAAGCAACACTGGAAAACAAGCCGAGGGAAAAAAATGAACGTGATTATGT------TTGGAATTAATTTCCTATCCTAAAAGCAGAAAATATTGAAAAGAACAAAGCACA---TTTTTTGAGACAAATAGAACA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87737514 154 - 129401213 aaagcacaaggaacAATAAATATTTGGAAATAGCTGTTGAAAACAAATAG-TCAGGGGAGGTGA--TGAATCATCTTCTGGCTCTATACTGATTTCCTATCTTGATATCAGGAATTATGGGGATGAACAAAGCATG---TATTTCAGagagaaccggaca
i mm10.chr8                I 482 I 9553
e canFam3.chr16             18037765 338 -  59632846 I

a score=2130705.000000
s hg38.chr4_KI270925v1_alt    363059 790 +    555799  
s panTro4.chr4             193065672 788 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198156036 790 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113833877 786 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183737502 774 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189129627 774 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178548731 776 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135489370 773 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190594955 792 - 190850796  
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87737668 9553 - 129401213 I
e canFam3.chr16             18037765 338 -  59632846 I

a score=1021572.000000
s hg38.chr4_KI270925v1_alt    363849 320 +    555799 AACTAGTACTTTTACTTATAAAGAGACAATAGTGGTAATGAATTTAAATATTTGGGGTAAAGAATAGGATCTTGGTAAGACAATATTGGCAAAAT--ATAAAACAGAAAAAAT-AAGGAATCAGAAACA------TAAGTAGTTCAGTACTGTG---------AAAAAATTCTggatctgagaagcaaaagaacagagattgta-----------------------------------------ttgcatttctgctccaaacctgctgaatcaccttaggcaatgcatgccctttccctgaatctgt--tttcttttctacaaaataaagtgagctagatcatctc----------caaATATTCACATTTTTCGACTCTACATGGACT
s panTro4.chr4             193066460 320 + 193495092 AACTAGTACTTTTACTTATAAAGAGACAATAGTGGTAATGAATTTAAATATTTGGGGTAAAGAATAGGATCTTGGTAAGACAATATTGGCAAAAT--ATAAAACAGAAAAAAT-AAGGAATCAGAAACA------TAagtagttcagtattgtg---------aaaaaattctggatctgagaagcaaaagaacagagattgta-----------------------------------------ttgcgtttctgctccaaacctgctgaatcaccttaggcaatgcatgccctttccctgaatctgt--tttcttttctacaaaataaagtgagctagatcatctc----------caaATATTCACATTTTTCGACTCTACATGGACT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198156826 360 + 198332218 AACTAGTA-TTTTACTTATAAACAGACAATAGTGGTAATGAATTTAAATATTTGGGGTAAAGAATAGGATCTTGGTAAGACAATATTGGCAAAAT--ATAAAACAGAAAAAAT-AAGGAATCAGAAACA------TAAGTAGTTCAGTATTGTG---------AAAAAATTCTGGATCTGAGAAGCAAAACAACAGAGATTGTATTGTGTTTCTGCTCCAAACCTGCTGAATCACCTTAGGTGTGTTGTGTTtctgctccaaacctgctgaatcaccttaggcaatgcatgccctttccctgaatctgt--tttcttttctacaaaataaagtgagctagattatctc----------caaATATTCACATTTTTTGACTCTACATGGACT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113834663 330 + 115148730 AACTAGTACTTTTACTTATAAAGAGACAATAGTGGTAATGAATTTAAATATTTGGGGTAAAGAATAGGATCTTGGTAAGACAATACTGGCAAAAT--ATAAAACAGAAAAAAT-AAGGAATCAGAAACG------TAAGTAGTTCAGTATTGTG---------AGAAACTTCTGGATCTGAGAAGCAAAAGAAGAGAGATTGTA-----------------------------------------TTGCGTTtctgttccaaacctgctgaatcaccttaggcaatgcatgccctttccctaaatctgt--tttcttttctacaaaataaagtgagctagattatctccaaggtcccgcaaatattcacatttttcgactctaCATGGGCT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183738276 372 + 184069350 AACCAGTACTTTTACTTATAAAGAGACAATAGTGGTAATGGATTTAAATATTTGGGGTAAAGAATAGGATCCAGGTAAGACAATACTGGCAAAAT--ATAAAACAGAAAAAAT-AAGGAATCAGAAACA------TAAGTAGTTCAGTATTGTGA--------AAAAAATTCTGGATCTGAGAAGCAAAAGAACAGAGATTGCATTGCGTTTCTGCTCCAGACCTGCTGAATCACCTTAGGTGTATTGcatttctgttccagacctgctgaatcaccttaggcaatgcatgccctttccctgaatctgt--tttcttttctacaaactaaagtgaactaggtcatctccaaggtcccccaaatattcacactttccgactctaCATGTACT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189130401 372 + 189454096 AACCAGTACTTTTTCTTATAAAGAGACAATAGTGGTAATGGATTTAAATATTTGGGGTAAAGAATAGGATCCAGGTAAGACAATACTGGCAAAAT--ATAAAACAGAAAAAAT-AAGGAATCAGAAACA------TAAGTAGTTCAGTATTGTGA--------AAAAAATTCTGGATCTGAGAAGCAAAAGAACAGAGATTGCATTGCGTTTCTGCTCCAGACCTGCTGAATCACCTTAGGTGTATTGcatttctgttccagacctgctgaatcaccttaggcaatgcatgccctttccctgaatctgt--tttcttttctacaaactaaagtgaactaggtcatctccaaggtcccccaaatattcacactttccgactctaCATGTACT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178549507 331 + 178775436 AACTAGTACTTTTACTTATAAAGAGACAATAGTGGTAATGGATTTAAATATTTGGGGTAAAGAATAGGATTCAGGTAAGACAATACTggcaaaat--ataaaacagaaaaaat-aaggaaTCAGAAACA------TAAGTAGTTCAGTATTGTGa--------aaaaaaTTCTGGATCTGAGAAGCAAAAGAACAGAGATTGCATTGCGTTTCTgc-----------------------------------------tccagacctgctgaatcaccTTAGGCAATGCATGCCCTTTCcctgaatctgt--tttcttttctacaaaCTAAAGTGAACTAGGTCATCTCCAAGGTCCCCCAAATATTCACACTTTTCGACTCTACATGTACT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135490143 371 + 135778131 AACTAGTACTTTTACTTATAAAGAGACAATAGTGGTAATGGATTTAAATATTTGGGGTAAAGAATAGGATCCTGGTAAGACAATACTGGCAAAAT--ATAAAACAG-AAAAAT-AAGGAATCAGAAACA------TAAGTAGTTCAGTATTGTGA--------AAAAAATTCTGGATCTGAGAAGCAAAAGAACAGAGATTGCATTGCGTTTCTGCTTCAGCCCTGCTGAATCACCTTAGGTGTATTGCGTTtctgctccagacctgctgaatcaccttaggcaatgcatgctctttccctgaatctgt--tttcttttctacaaactaaagtgaactaggtcatctccaaggtcccccaaatattcacacttttcgactctaCATGTACT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190595747 322 - 190850796 AAGTAGTGTTTTCACTTATGAAGAGACAATAGTGGTAACAAATTTAAATATTTGGAGTAAAGGATAGGACCTTGGCAAGATAATAATGGCAAAAT--ATAAAACAGAAAAAATAAAGGAATCAGAAACA------TAAGTAGTTCAGTATCATGAATATCATGAAAAGATTCTGGATATGAGAAGCAAGAGAACAGAGATTGTA-----------------------------------------CTGTGTTt------------------atcaccttagataatacctgccctttccctgaatctgt--tttcttttctacaaaataaagtgaactggatcatcttcaaggtcccccaaatattcacattctttgactctaCATGGACT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18038103 334 -  59632846 AAACAATATTTATATTTATAAAGAGACAGTAATGGTAAGAAATTTAAATG-TGGGAATAAAGGATA--ATCTTGATAAGATTGCATTGGCAAAATACATAGAAAAGACAAAATAAAGGAATTGGGAAAAAAAAATCAAATATCCCAGGATTGTG---------GGGAAATCCTGggactgaggaaaaagagagctggaattata-----------------------------------------ttatttttctgcctcaaaactgttctataatcttatataactcattcccttttcctcaactcttaatttcctttctacaa---agaatgaaataggtcatctccaaagtccc-aaaatactggcattcttatgatccatatgGAGT
i canFam3.chr16            I 338 C 0
e mm10.chr8                 87737668 9553 - 129401213 I

a score=3939908.000000
s hg38.chr4_KI270925v1_alt    364169 1101 +    555799  
s panTro4.chr4             193066780 1090 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198157186 1098 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113834993 1102 + 115148730  
i nomLeu3.chr7b            C 0 I 142
s rheMac3.chr5             183738648 1168 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189130773 1168 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178549838 1168 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135490514 1171 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190596069 1082 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87747221 1087 - 129401213  
i mm10.chr8                I 9553 C 0
s canFam3.chr16             18038437 1100 -  59632846  
i canFam3.chr16            C 0 C 0

a score=788631.000000
s hg38.chr4_KI270925v1_alt    365270 241 +    555799 cg-----------------------------------------------------------------------------------------gaTATAATGCAAATAAGACACTTGCTGTGGATGGCTGATCATAACAATAACAT-----GATCTGGGGGCATCAGAAGTCCTGCTTGACTCTTATTTTCTAACATTTTTGCAGGCTGCTGGCTGACCTCCACCCCACTTCAGGAACAACAGGATAGACTACAGCTGGGCCGATCCATAAACTCACCAGTAGCCCAGGAGATGGCCTGACATGAAAAGTTCTGCACAAGCAGGAGCAAAATGAGCC
s panTro4.chr4             193067870 311 + 193495092 CGGATATAATTTTGCATTCTCACGCCATGGGTTACAAGAGGCAACAGCAAT-------------------GTAGATCCATCGCTATCACCAGATATAATGCAAATAAGACACTTGCTGTGGATGGCTGATCATAACAATAACAT-----GATCTGGGGGCATCAGAAGTCCTGCTTGACTCTTATTTTCTAACATTTTTGCAGGCTGCTGGCTGACCTCCACCCCACTTCAGGAACAACAGGATAGACTACAGCTGGGCCGATCCATAAACTCACCAGTAGCCCAGGAGATGGCCTGACATGAAAAGTTCTGCACAAGCAGGAGCAAAATGAGCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198158284 312 + 198332218 CGGATATAATTTTGCATTCTCATGCCATGGGT------------------TACAAGAGGCAAACAGCAATGTAGATCCATCGCTATCACCAGATATAATGCAAATAAGACACTTGCTGTGGATGGCTGATCATAACAATAACAT-----GATCTGGGGGCATCAGAAGCCCTACTTGACTCTCATTTTCTAACATTTTTGCAGGCTGCTGGCTGACCTCCACCCCACTTCAGGAACAACAGGACAGACTACAGCTGGGCCAATCCATAAACTCACCAGTAGCCCAGGAGATGGCCTGACAGGAAAAGTTCTGCACAAGCAAGAGCAAAATGAGCC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113836237 241 + 115148730 -----------------------------------------------------------------------------------------CAGATATAATGCAAATAAGACACTTGCTGTGGATGGCTGATCATAACAATAACAT-----GATCCGGGGGCATCAGAAGCCCTACTTGACTCTCATTTTCCAACATTTTTGCAGGCTGCTGGCTGACCTCCACCCCACTTCAGGAACAACAAGATAGACTACAGCTGGGCCAATCCATAAACTCACCAGTAGCCAAGGAGATGGCCTGACATGAAAAGTGCTGCACAAGCTGGAGCAAAATGAGCC
i nomLeu3.chr7b            I 142 C 0
s rheMac3.chr5             183739816 241 + 184069350 -----------------------------------------------------------------------------------------CAGATATAATGCATGAAAGACACTTGCTACGGATGGCTGATCATAACAATAACAT-----GATCTGGGGCCATCAGAAGCCCTACTTGACTCTCATTTTCTCACATTTTTGCAGGCTGCTGGCTGACCTCCACCTCACTTCAGGAACAACAGGGTAGACTACAGCTGGGCCGATCCATAAACTCACCAGTAGCCCAGGAGATGGCCTGACGTGGAAAGTTCTGCACAAGCAGGAGCAGAACGAGCC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189131941 241 + 189454096 -----------------------------------------------------------------------------------------CAGATATAATGCATGAAAGACACTTGCTACGGATGGCTGATCATAACAATAACAT-----GATCTGGGGCCATCAGAAGCCCTACTTGACTCTCATTTTCTCACATTTTTGCAGGCTGCTGGCTGACCTCCACCCCACTTCAGGAACAACAGGGTAGACTACAGCTGGGCCGATCCATAAACTCACCAGTAGCCCAGGAGATGGCCTGACGTGGAAAGTTCTGCACAAGCAGGAGCAGAACGAGCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178551006 241 + 178775436 -----------------------------------------------------------------------------------------CAGATATAATGCACGAAAGACACTTGCTACGGATGGCTGATCATAACAATAACAT-----GATCTGGGGCCATCAGAAGCCCTACTTGACTctcattttctcacatttttgcaGGCTGCTGGCTGACCTCCACCCCACTTCAGGAACAACAGGGTAGACTACAGCTGGGCCGATCCATAAACTCACCAGTAGCCCAGGAGATGGCCTGACGTGGAAAGTTCTGCACAAGCAGGAGCAGAACGAGCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135491685 241 + 135778131 -----------------------------------------------------------------------------------------CAGATATAATGCACGAAAGACACTTGCTATGGATGGCTGATCATAACAATAACAT-----GATCTGGGGCCATCAGAAGCCCTATTTGACTCTCACTTTCTCACATTTTTGCAGGCTGCTGGCTGACCTCCACCCCACTTCAGGAACAACAGGGTAGACGACAGCTGGGCCGATCCATAAACTCAACAGTAGCCCAGGAGATGGCCTGACGTGAAAAGTTCTGCACAAGCAGGAGCAAAACGAGCT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190597151 239 - 190850796 -----------------------------------------------------------------------------------------CGGATACAACACATGAAAGGCGCTTG-TGTGGACAGCTGATCAGAACAATACCAT-----GATTTAGGAGCATCAGAAGCCCTACTTGACTCTCATTCTCTAACATTTTCACAGGATGCTGGCTGACCTACACCTCACTTCAGGTACAATC-GACAGACTACAGCTAGGCCAATTCATAAACTCACCAGCAGCCCAGGAGATGGCCTGACATGAAAGGCTCTGCACAAGCAGGAAGAAAATGAGCC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87748308 228 - 129401213 -----------------------------------------------------------------------------------------TGCAAGTACCAAACAAAAGACACATGCTACCTA-GGCTG-CAAGGACAGTGCCATCCACGACTCTGAG--TATCAAAGGCTATATTTGATTCTC-----CTGAGTTCTCTATGGACTCCATGTTGATTCTCATGTGACTCTAGGCAGAGCA---------AAAGACAGGACAACCTATAGACTCACTATCAGCCCAGGAGATAGCCTAACATAAAAGGTTCCACACAAACAGAAATAAAATGGACC
i mm10.chr8                C 0 I 5409
s canFam3.chr16             18039537 229 -  59632846 -----------------------------------------------------------------------------------------TGGAAATATTGAACAAAAGAGACATGCTACAGATGACTG-TCAAAGCAAAAACAT-----GGTTCTGGAACATCAAAAACCTCACCTAAC----ATGTCTTAAGTGTTTTGTGGACTACCGGTTGCTCCCCACCCCACTTCTGGCACAGCA-----GAATGCAAACAGgccaatcaatagattcaccagctccctgggagattgtcagacattagaaattctgtgcaa--agatagaaaatgaacc
i canFam3.chr16            C 0 C 0

a score=8313.000000
s hg38.chr4_KI270925v1_alt    365511 3 +    555799 AAT
s panTro4.chr4             193068181 3 + 193495092 AAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198158596 3 + 198332218 AAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113836478 3 + 115148730 AAT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183740057 3 + 184069350 GAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189132182 3 + 189454096 GAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178551247 3 + 178775436 GAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135491926 3 + 135778131 GAT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190597390 3 - 190850796 AAT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18039766 3 -  59632846 agt
i canFam3.chr16            C 0 I 8412
e mm10.chr8                 87748536 5409 - 129401213 I

a score=273177.000000
s hg38.chr4_KI270925v1_alt    365514 101 +    555799 AGCTCCACTTGCATTCTGTTGGTATCCTGCATGTTATTTTCACAGAGCAATACAAGTTTCTGCTGTACTGCACACACATATTACTCACTTTCTTTGCCGCC
s panTro4.chr4             193068184 101 + 193495092 AGCTCCACTTGCATTCTGTTGGTATCCTGCATGTTATTTTCACAGAGCAATACAAGTTACTGCTGTACTGCATGCACATATTACTCACTTTCTTTGCTGCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198158599 101 + 198332218 AACTCCATTTGCATTCTGTTGGTATCCTGCATGTTATTTTCACAGAGCAATACAAGTTTCTGCTGTACTGCACACACATATTACTCACTTTCTTTGCTGCC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113836481 100 + 115148730 AACTCCACTTGCATTCTGCTGGTATCCTGCATGTTATTTTCACAGAGCAGTACAAGTT-CTGCTGTACTGCACACACATATTACTCACTTTCTTTGCTGCC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183740060 101 + 184069350 AACTCCCTTTGCATTCTGTTTGTACTCTGTATGTTATTTTCACAGAGCAATACAAGCTTCTGCTGTACTGCACACACACATTACTAACTTTCTTTGCTGTC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189132185 101 + 189454096 AACTCCCTTTGCATTCTGTTTGTACTCTGTATGTTATTTTCACAGAGCAATACAAGCTTCTGCTGTACTGCACACACACATTACTAACTTTCTTTGCTGTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178551250  99 + 178775436 AACTCCCTCTGCAT--GGTTTGTACTCTGTATGTTATTTTCACAGAGCAATACAAGCTTCTGCTGTACTGCACACACACATTACTAACTTTCTTTGCTGTC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135491929 101 + 135778131 AACTCCCTTTGCATTCTGTGTGTACTCTGTGTGTTATTTTCACAGAGCAATACAAGTTTCTGCTGTACTGCACACACACATTACTCACTTTCTTTGCTGTC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190597393  98 - 190850796 GACTCCATTT-CATTCTGTTTGTATCC--CACGTTATTTTCACAGAGCGGTAAAAGTTTCTGCTGTTCTGCACACACATACTGCTCACTTTCTTTGCTGCC
i calJac3.chr3             C 0 I 7438
e mm10.chr8                 87748536 5409 - 129401213 I
e canFam3.chr16             18039769 8412 -  59632846 I

a score=2087633.000000
s hg38.chr4_KI270925v1_alt    365615 869 +    555799  
s panTro4.chr4             193068285 880 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198158700 924 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113836581 877 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183740161 876 + 184069350  
i rheMac3.chr5             C 0 I 7361
s macFas5.chr5             189132286 876 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178551349 876 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135492030 875 + 135778131  
i chlSab2.chr7             C 0 I 7319
e mm10.chr8                 87748536 5409 - 129401213 I
e canFam3.chr16             18039769 8412 -  59632846 I
e calJac3.chr3             190597491 7438 - 190850796 I

a score=2734.000000
s hg38.chr4_KI270925v1_alt    366484 3 +    555799 agg
s panTro4.chr4             193069165 3 + 193495092 agg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198159624 3 + 198332218 agg
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113837458 3 + 115148730 agg
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189133162 3 + 189454096 cgg
i macFas5.chr5             C 0 I 7706
s papAnu2.chr5             178552225 3 + 178775436 CGg
i papAnu2.chr5             C 0 I 7459
e mm10.chr8                 87748536 5409 - 129401213 I
e canFam3.chr16             18039769 8412 -  59632846 I
e calJac3.chr3             190597491 7438 - 190850796 I
e chlSab2.chr7             135492905 7319 + 135778131 I
e rheMac3.chr5             183741037 7361 + 184069350 I

a score=2418.000000
s hg38.chr4_KI270925v1_alt    366487 5 +    555799 taatG
s panTro4.chr4             193069168 5 + 193495092 taatG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198159627 5 + 198332218 taatG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113837461 5 + 115148730 tgatG
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87748536 5409 - 129401213 I
e canFam3.chr16             18039769 8412 -  59632846 I
e calJac3.chr3             190597491 7438 - 190850796 I
e chlSab2.chr7             135492905 7319 + 135778131 I
e papAnu2.chr5             178552228 7459 + 178775436 I
e macFas5.chr5             189133165 7706 + 189454096 I
e rheMac3.chr5             183741037 7361 + 184069350 I

a score=910.000000
s hg38.chr4_KI270925v1_alt    366492 1 +    555799 a
s panTro4.chr4             193069173 1 + 193495092 a
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198159632 1 + 198332218 a
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113837466 1 + 115148730 a
i nomLeu3.chr7b            C 0 C 0
s canFam3.chr16             18048181 1 -  59632846 a
i canFam3.chr16            I 8412 C 0
e mm10.chr8                 87748536 5409 - 129401213 I
e calJac3.chr3             190597491 7438 - 190850796 I
e chlSab2.chr7             135492905 7319 + 135778131 I
e papAnu2.chr5             178552228 7459 + 178775436 I
e macFas5.chr5             189133165 7706 + 189454096 I
e rheMac3.chr5             183741037 7361 + 184069350 I

a score=76476.000000
s hg38.chr4_KI270925v1_alt    366493 22 +    555799 tacttattgagcatctactata
s panTro4.chr4             193069174 22 + 193495092 tacttattgagcatctactata
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198159633 22 + 198332218 tacttattgagcatctactata
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113837467 22 + 115148730 tatttattgagcatctactata
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183748398 22 + 184069350 tacttactgagcatctgctgta
i rheMac3.chr5             I 7361 C 0
s macFas5.chr5             189140871 22 + 189454096 tacttactgagcatctgctgta
i macFas5.chr5             I 7706 C 0
s papAnu2.chr5             178559687 22 + 178775436 TACTTACTGAGCATCTGCTGTA
i papAnu2.chr5             I 7459 C 0
s chlSab2.chr7             135500224 22 + 135778131 TACTTACTGAGCATCTGCTATA
i chlSab2.chr7             I 7319 C 0
s calJac3.chr3             190604929 22 - 190850796 tacttactgagcatccgctatg
i calJac3.chr3             I 7438 C 0
s canFam3.chr16             18048182 22 -  59632846 tatctactgagcatccactcta
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87748536 5409 - 129401213 I

a score=1262116.000000
s hg38.chr4_KI270925v1_alt    366515 376 +    555799 tca------------ggtgcagccagtgtagctcttgaacaagacagacaaaattctcATACCTCTACCAG-GGTCATATT-TGATCTTCATTTATCTACCATTTATAAC-----attt-tatt-------tgtcttttattggaaacccttcaaatcctttctgaagtagatatagttgaaataaaGATATAAGTTGAGACTGAGATCATATACTGCATTATTTCCCTTGCAAATTCATATTAATTACAGTGAATATCTC-ATTTTGTTTTTCTTTTTGTTTGGAGGGAAG----GAGTAGTTCCTG-TCTTGCTACTTTT---CTTTCTAACCGTGCCATGATTTAAGTTCCTTCATTCATCGTGTTGGCTCTCTTGAAGAAAAATCCAGACACCTGCCTTACACTGGAA
s panTro4.chr4             193069196 374 + 193495092 tca------------ggtgcAGCCAGTGTAGCTCTTGAACAAGACAG--AAAATTATCATACCTCTACCAG-GGTCATATT-TGATCTTCATTTATCTACCATTTATAAC-----attt-tatt-------tgtcttttattggaaacccttcaaatcctttctgaagtagatatagttgaaataaaGATATAAGTTGAGACTGAGATCATATACTGCGTTATTTCCCTTGCAAATTCATATTAATTATAGTGAATATCTC-ATTTTGTTTTTCTTTTTGTTTGGAGAGAAG----GAGTAGTTCCTG-TCTTGCTACTTTT---CTTTCTAACCGTGCCATGATTTAAGTTCCTTCATTCATCGTGTTGGCTCTCTTGAAGATAAATCCAGACACCTGCCTTACACTGGAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198159655 376 + 198332218 tca------------ggtgcagccagtgtagctcttgaacaagacagacaaaattctcatacctctacaat-ggtcatatt-TGATCTTCATTTATCTACCATTTATAAC-----ATTT-TATT-------TGTCTTTTATTGGAAACCCTTCAAATCCTTTCTGAAGTAGATATAGTTGAAATAAAGATATAAGTTGAGACTGAGATCATATACTGCGTTATTTCTCTTGCAAATTCATATTAATTATAGTAAATATCTC-ATTTTGTTTTTCTTTTTGTTTGGAGGGAAG----GAGTAGTTCCTG-TCTTGCTACTTTT---CTTTCTAACCGTGCCATGATTTAAGTTCCTTCATTCATCGTGTTGGCTCTCTTGAAGATAAATCCAGAAACCTGCCTTACACTGGAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113837489 378 + 115148730 tca------------ggtgcagccagtgtagctcttgaataagacagacaaaattctcATACCTCTACAAGTGGTGGAAttctgatctttatttatctaccatttataac-----attt-tatt-------tgtcttttatcggaaacccttcaaatcctttctgaagtagatatagttgaaataaaGATGTAAGTTGAGACTGAGATCATATACTGCGTTATTTCTCTTGCAAATTCATATTAATTATAGTGAATATCTG-ATTTTGTTTTTCTTTTTGTTTGGAGGGAAG----GAGTAGTTCCTG-TCTTGCTACTTTT---CTTTCTAACCATGCCATGATTTAAGTTCCTTCATTCATCGTGTTGGCTGTCTTGAAGATAAATCCAGAAACCTGCCTTACACTGGAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183748420 375 + 184069350 tca------------gctgtggccagtgtagctcttgaacaagacagacaaaattctcatgcttctacaag-ggtcataTT-TGGTCTTCATTTCTCTACCATTTGTAAC-----attt-tatt-------tgtcttttattggaaacccttcaaatcctttctgaagtagatatagttgaaataaGGATGCAAGTTGAGACTGAGATCATATACTGAGTTATTTCTCTTGCAAATTCATAGATATTCTAGTGAATACCTC-ATTTTGTTTTTCTGTTTGTTTGGAGGGAAG----GGGTAGTTCCTG--CTTGCTACTTTT---CTTTCTCACTGTGCCATGATTTAAGTTCCTTCATTCATCGTGTTGGCTGTCTTGAAGATAGATCCAGAAACCTGCCTCACACTGGAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189140893 375 + 189454096 tca------------gctgtggccagtgtagctcttgaacaagacagacaaaattctcatgcttctacaag-ggtcataTT-TGGTCTTCATTTCTCTACCATTTGTAAC-----ATTT-TATT-------TGTCTTTTATTGGAAACCCTTCAAATCCTTTCTGAAGTAGATATAGTTGAAATAAGGATGCAAGTTGAGACTGAGATCATATACTGAGTTATTTTTCTTGCAAATTCGTAGATATTCTAGTGAATACCTC-ATTTTGTTTTTCTGTTTGTTTGGAGGGAAG----GGGTAGTTCCTG--CTTGCTACTTTT---CTTTCTCACTGTGCCATGATTTAAGTTCCTTCATTCATCGTGTTGGCTGTCTTGAAGATAGATCCAGAAACCTGCCTCACACTGGAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178559709 376 + 178775436 TCA------------GCTGCGGCCAGTGTAGCTcttgaacaagacagacaaaattCTCATGCCTCTACAAG-GGTCATATT-TGGTCTTCATTTCTCTACcatttgtaac-----attt-tatt-------tgtcttttattggaAACCCTTCAAATCCTTTCTGAAGTAGATATAGTTGAAATAAGGATACAAGTTGAGACTGAGATCATATACTGAGTTATTTCTCTTGCAAATTCATAGATATTCTAGTGAAtacctc-attttgtttttctgtttgtttggagGGAAG----GGGTAGTTCCTG-TCTTGctactttt---ctttctcactgtGCCATGATTTAAGTTCCTTCATTCATCGTGTTGGCTGTCTTGAAGATAGATCCAGAAACCTGCCTCACACTGGAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135500246 381 + 135778131 TCA------------GCTGTGGTCAGTGTAGCTCTTGAACAAGACAGACAAAATTCTCAGGCCTCTACAAG-GGTCATATT-TGGTCTTCATTTCTCTACCATTTGTAACATTTTATTT-TATT-------TGTCTTTTATTGGAAACTCTTCAAATCCTTTCTGAAGTAGATATAGTTGAAATAAGGATACAAGTTGAGACTGAGATCATATACTGAGTCATTTCTCTTGCAAATTCATAGATATTCTAGTGAATATCTC-ATTTTGTTTTTCTGTTTGTTTGGAGGGAAG----GGGTAGTTCCTG-TCTTGCTACTTTT---CTTTCTCACTGTGCCATGATTTAAGTTCCTTCATTCATTGTGTTGGCTGTCTTGAAGGTAGATCCAGAAACCTGCCTCACACTGGAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190604951 368 - 190850796 cca------------ggtgcAACCAATGTAGGTCTTGAACAAGATG--CAAAATTCTTATACCTCTGCAAG-AGTAATATT-TGATCTTCATTTATCTACCATTTATAAT-----ATTT-TATT-------TGTCTTTTATCAGAAACCCTTTGAATTCTCTCTGAAG----TACAGTTGAAAAAAAGATATAAGTTGAGACTGAGATCATATACTGAGTTATTTCTCTTGCAAATTCATAGCACTCATAGTGAATGTCTGAATTTTGTTTTTCTTTTTGTTTGGAGGGAAG----GGGTAGTTCCTG-TGTTGCTTCTTTT---CTTTCTAACAGTGCCATGATTTAAGTTCCCTCATTCATC---TTGGCTATCTTGAAGATAAATCCAGAAACCTGCCTTCCGCTGGAA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87753945 371 - 129401213 TTA------------GGTGCTGCTGATAGACTTCTTTCA-AAAAAAGACAAGGTCCACATAACTCTGCCAA-GCTAATATT-TGACCCCTTGTTCTCTATAACTGACTGA-----ATTTGTTTC-------TGTCTTCTATAATAAATCCATCAGATCCTTT-TGAAGTACAAGCAGTTGAAATAAAAGCTTAAATTGAAATCGTGATCACGCATTGACTTGGTTCTCTTGTAAATTCATACTAATCGTGGTGAATGGTTT--TCTTGTATTTGGTTTGGGTTCCAAGTCAG----GAGTGATTGTGGATTTTCCTACTCTT---CTT--TAATAGTGGC--GATTTAAATCGCCTGTTTCATGATGTCAGATCCTTGAATGATCAACCCAGAAACATGTTTCACACTAGAA
i mm10.chr8                I 5409 I 587
s canFam3.chr16             18048204 373 -  59632846 tcaagccaatgtcttgctgtggctgatacaggtgtt-aataagacagacaaaattcttagaactccatga--agTAATATT-GACTC-----TTATCTACCATTTCAATG-----TTTT-TATTTTACTTCTGTCTTCTACT-CAGACCTCTCAAATCCTTCCTGAGGTGG----AGTTGTAATAAGG-------------CTCTGATCACATATTGACTTATTTCCATTGCAAATTTATACCATTCATAGCAAATATTTG-TCTCATTCTTGGTTTTAGTTTTGAGGGATGAGGAAGGGAGATCATG-TTTTGCTACTTTTTTCCCTTCCAGCAGTGCCTTGTTTGAAGTTCCCTTGTT----GTGTTGGTTTCTTGGAAAGTAAATCCAGACATCTGTCTCACACTGTAA
i canFam3.chr16            C 0 C 0

a score=702949.000000
s hg38.chr4_KI270925v1_alt    366891 238 +    555799 GCAGCAAGGGCTTTTCCTCGCCGGCTCCCGTGCAGCTCTCAGGCAGGCGTGTGACCAGACCATGGCTGTCAGTCGCTCTCCCTCCAGGCTTGGACTCTTGA-TCCGTGATGAGAGAACAGCAGAGGCACATGATATTTATCGCAGCACCAGTGCGCTGAGCGAACCCTTCCTGCCCAGAGACGAATGC-AGGG-TCCTTGCTTCCCCAGTCCCTTTGATTTCTATTTTCAAGCCTAGTTTC
s panTro4.chr4             193069570 238 + 193495092 GCAGCAAGGGCTTTTCCTCGCCGGCTCCCGTGCAGCTCTCAGGCAGGCGTGTGACCAGCCCATGGCTGTCAGTCGCTCTCCCTCCAGGCTTGGACTCTTGA-TCCGTGATGAGAGAACAGCAGAGGCACATGATATTTATCACAGCACCAGTGCGCTGAGTGAACCCTTCCTGCCCAGAGACGAATGC-AGGG-TCCTTGCTTCCCCAGTCCCTTTGATTTCTATTTCCAAGCCTAGTTTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198160031 238 + 198332218 GCAGCAAGGGCTTTTCCGCGCCGGCTCCTGTGCAGCTCTCAGGCAGGCGTGTGACCAGCCCATGGCTGTCAGTCACTCTCCCTCCAGGCTTGGACTCTTGA-TCAGTGATGAGAGAACAGCAGTGGCACATGACATTTATCACAGCAACAGTGTCCTGAGTGAACCCTTCCTGCCCAGAGACGAATGC-AGGG-TCCTTGCTTCCCCAGTCCCTTTGATTTCTATTTCCAAGCCTAGTTTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113837867 238 + 115148730 GCAGCAAGGGCTTTTCCTCGCCAGCTCCCGTGCAGCTCTCAGGCAGGCGTGTGACCAGCCCATGGCTGTCAGTCACTCTCCCTCCAGGCTCGGACTCTTTA-TCAGTGATGAGAGAACAGCTGATGCACATGATATTTATCACAGCAACAGTGTGCTGAGTGAACCCTTCCTGCCCAGAGATGAATGC-AGGG-TCCTTGCTTCCCCAGTCCCTTTGATTTCTATTTCCAAGCCTGGTTTC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183748795 238 + 184069350 GCAGCAAGGGCTTTTCCTCGCCGGCTCCTGTGCAGCTCTTGGGCAGGCGTGTGACCAGCCCGTGGCTGTCGGTCACTCTCCCTCCAGGCTCGGACACTTGA-TCAGTGAAGAGAGAACAGCAGAGGCACGTGGTGTTTATCACAGCAACAGTGTGCTCAGCGAACCCTTCTTGCCCAGAGATCAATGC-AGGG-TCCTTGCTTCCCGAGTCCCTTTGATTTCCATTTCCAAGCCTAGTTTC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189141268 238 + 189454096 GCAGCAAGGGCTTTTCCTCGCCGGCTCCTGTGCAGCTCTTGGGCAGGCGTGTGACCAGCCCGTGGCTGTCGGTCACTCTCCCTCCAGGCTCGGACACTTGA-TCAGTGAAGAGAGAACAGCAGAGGCACGTGGTGTTTATCACAGCAACAGTGTGCTCAGCGAACCCTTCTTGCCCAGAGATCAATGC-AGGG-TCCTTGCTTCCCGAGTCCCTTTGATTTCCATTTCCAAGCCTAGTTTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178560085 238 + 178775436 GCAGCAAGGGCTTTTCCTCGCCAGCTCCTGTGCAGCTCTTGGGCAGGCGTGTGACCAGCCCGTGGCTGTCAGTCACTCTCCCTCCAGGCTCGGACACTTGA-TCAGTGAAGAGAGAACAGCAGAGGCACGTGGTGTTTATCACAGCAACAGTGTGCTCAGCGAACCCTTCCTGCCCAGAGATCAATGC-AGGG-TCCTTGCTTCCCGAGTCCCTTTGATTTCCATTTCCAAGCCTAGTTTC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135500627 233 + 135778131 GCAGCAAGGGCTTTTCCTCGCCGGCTCTGGTGCAGCTCTTGGGCAGGCATGTGACCAGCCCGTGGCTGTCAGTCACTCTCCCTCCAGGCTCGGACACTTGA-TCAGTG----GAGAACAGCAGA-GCATGTGGTGTTTATCACAGCAACAGTGTGCTCAGCAAACCCTTCCTGCCCAGAGATCAATGC-AGAG-TCCTTGCTTCCCGAGTCCCTTTGATTTCCATTTCCATGCCTAGTTTC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190605319 230 - 190850796 TCAA-AACGGCTTTTCCTCATCAGCTCTGGCGCAGCCATAGGGCAGGCACGAGAGCAGCCCGCGCCTGTCAGTCATTCTCCCTCCAGGCTGGGACTCTTGA-TCAGTGATGAGAGGACAGCAGAGGCATATGACGTTTATCACAGTAGCAGTGCGCAGAGTGAACCCTTCCTGCC--GAGATCAGTGC-AGGGCTCCTTGCTCCCCGAGTCCCTCCGA-TTCTATCTGCA-----AGTTTC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18048577 228 -  59632846 TCAAAAAGAGGTTTCCCCTTCCAGCCTCAGGGT--CCTGTAAGTAGGCATGCAACCAGACTGAGGTGGGCCATTCCTACCACGCAGGGCTTGGGTTTCTGATTCACAGAAATTAGACTGGCAGTGTCATGGGACA-TTATCCCAGGAACAGGATGTCAATTTGATTTTTTCTGCTCAAAGATAAATGCAAGAG-TTCCTGCTT--------CCTCTGA-TTCTATTTCCAAGACTAGTTTT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87754316 587 - 129401213 I

a score=422093.000000
s hg38.chr4_KI270925v1_alt    367129 107 +    555799 TCAGCTTCCAGTTTATTCTTTGAGCCTTGCTCTCATTGCTACCACCAACATTTTTCAGGAAATTCCCCTTTCTTTTCATGTTATTTTCAGATGGTTGCAACTAAAGA
s panTro4.chr4             193069808 107 + 193495092 TCAGCTTCCAGTTTATTCTTTGAGCCTTGCTCTCATTGCTACCACCAACATTTTTCAGGAAATTCCCCTTTCTTTTCATGTTATTTTCAGATGGTTGCAACTAAAGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198160269 107 + 198332218 TCAGCTTCCAGTTTATTCTTTGAGCCTTGCTCTCATTGCTACCACCAATATTTTTCAGGAAATTCCCCTTTCTTTTCATGTTATTTTCAGATGGTTGCAACTAAAGA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113838105 107 + 115148730 TCAGCTTCCAGTTTATTCTTTGAGCCTTGCTCTCATTGCTACCACCAATATTTTTCAGGAAATTCCCCTTTCTTTTCATGTTATTTTCAGATGGTTGCAACTACAGA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183749033 107 + 184069350 TCAGCTTCCAGTTTATTCTTTGAGCCTTGCTCTCACTGCTGCCACCAATATTTTTCAGGCATTTCCCCTTTCCTTTCATGTTATTTTCAGATGGTTGCAACTAAAGA
i rheMac3.chr5             C 0 I 203
s macFas5.chr5             189141506 107 + 189454096 TCAGCTTCCAGTTTATTCTTTGAGCCTTGCTCTCACTGCTGCCACCAATATTTTTCAGGCATTTCCCCTTTCCTTTCATGTTATTTTCAGATGGTTGCAACTAAAGA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178560323 107 + 178775436 TCAGCTTCCAGTTTATTCTTTGAGCCTTGCTCTCACTGCTGCCACCAATATTTTTCAggcatttcccctttcctttcatgTTATTTTCAGATGGTTGCAACTAAAGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135500860 107 + 135778131 TCAGCTTCCAGTTTATTCTTTGAGCCTTGCTCTCACTGCTGCCACCAATATTTTTCAGGCATTTCCCCTTTCCTTTCATGTTATTTTCAGATGGTTGCAACTAAAGA
i chlSab2.chr7             C 0 I 135
s calJac3.chr3             190605549 107 - 190850796 TCAGCTTCCAGTTTATTCTCTGGGCCTTGCTCTCATTGCTACCACCAATACTTTTCGGGAAACTCCCCTTTTCTTTCATGTTATTTTCAAATGGTTGCAACGAAAGA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87754903 106 - 129401213 TCTGTTTCCAGTTGACTCTTTGAGCCACATTGGCTTCACTATCACCAGTCTTTCT-AAAAATATGGTCTCTTCGTTCAGGTTGTCTTCAAATGGTTCCAACCAAAGA
i mm10.chr8                I 587 C 0
s canFam3.chr16             18048805 105 -  59632846 CCAGCCTCCAGTTGACTCTTTGAGCCTTGCTCCCATCACTTCCACCAAT-CTTTGCAATAACTTCCCTTTTCTTTAC-TGCTATTTTCAAATGTTTGAAATTGAAGA
i canFam3.chr16            C 0 C 0

a score=24427.000000
s hg38.chr4_KI270925v1_alt    367236 12 +    555799 GCACTAAGCAAC
s panTro4.chr4             193069915 12 + 193495092 GCATTAAGCGAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198160376 12 + 198332218 GCACTAAGCAGC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113838212 12 + 115148730 GCACTAAGTGAC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189141613 11 + 189454096 -CCTTAAGTGAC
i macFas5.chr5             C 0 I 183
s papAnu2.chr5             178560430 11 + 178775436 -CCTTAAGTGAC
i papAnu2.chr5             C 0 I 149
s calJac3.chr3             190605656 12 - 190850796 GCATTAAGTGAC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87755009 12 - 129401213 ATACTAAATTAC
i mm10.chr8                C 0 I 2
s canFam3.chr16             18048910 12 -  59632846 GCATTAAGTGAC
i canFam3.chr16            C 0 C 0
e chlSab2.chr7             135500967 135 + 135778131 I
e rheMac3.chr5             183749140 203 + 184069350 I

a score=7076.000000
s hg38.chr4_KI270925v1_alt    367248 4 +    555799 ACTC
s panTro4.chr4             193069927 4 + 193495092 ACTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198160388 4 + 198332218 ACTA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113838224 4 + 115148730 ACTA
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189141807 4 + 189454096 ACTA
i macFas5.chr5             I 183 C 0
s papAnu2.chr5             178560590 4 + 178775436 ACTA
i papAnu2.chr5             I 149 C 0
s calJac3.chr3             190605668 4 - 190850796 ACTA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87755023 4 - 129401213 ATTA
i mm10.chr8                I 2 C 0
e canFam3.chr16             18048922 0 -  59632846 C
e chlSab2.chr7             135500967 135 + 135778131 I
e rheMac3.chr5             183749140 203 + 184069350 I

a score=218308.000000
s hg38.chr4_KI270925v1_alt    367252 79 +    555799 TCCAAACTCAACTGGGCCCTGCTATTCCCAGTG-TTGCCAATGAGAAAG-AATACATGGAGCCCCACAGAAGGAG--GAGTCA
s panTro4.chr4             193069931 79 + 193495092 TCCAAACTCAACGGGGCCCTGCTATTCCCAGTG-TTCCCAATGAGAAAG-AATACATGGAGTCCCACAGAAGGAG--GGGTCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198160392 79 + 198332218 TCCAAACTCAACTGGGCCCTGCTATTCCCAGTG-TTCCCAATGAGAAAG-AATACATCAAGCCCCACAGAAGGAG--GGGTCA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113838228 79 + 115148730 TCCAAACTCAGCTGGGCCCTGCTCTTCCCAGTG-TTCCCAATGAGAAAG-AATACATCAAGCCCCACAGAAGGAA--GGGTCA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183749343 76 + 184069350 TCCAAACTCACCTGGGCCCTGCTACTCCCGGTG-TCCCCAGTGAGAAAG-AATACACCAAGCCCCAC---AGGAG--GGGTCG
i rheMac3.chr5             I 203 C 0
s macFas5.chr5             189141811 76 + 189454096 TCCAAACTCACCTGGGCCCTGCTACTCCCGGTG-TCCCCAGTGAGAAAG-AATACACCAAGCCCCAC---AGGAG--GGGTCG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178560594 76 + 178775436 TCCAAACTCACCTGGGCCCTGCTACTCCCGGTG-TCCCCAGTGAGAAAG-AATACACCAAGCCCCAC---AGGAG--GGGTCG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135501102 80 + 135778131 TCCAAACTCACCTGGGCCCTGCTACTCCCAGTG-TCCCCAGTGAGAAAGAAATACACCAAGCCCCACAGAAGGAG--GGGTCA
i chlSab2.chr7             I 135 C 0
s calJac3.chr3             190605672 77 - 190850796 TCCAAACTCAGCTGGGCCCTGCTGCTCCCAATG-TTCCCAATGAGAAAG-AATACATTGAGCCC----GGAGGAGGAGGGTCA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87755027 79 - 129401213 GCAAAACTAAATTGGCCCCTGTGGTCACTCACT-TCTTTCACTAGAATG-AAAGCTTTGAGTTCTACAAAATATG--AAGTTA
i mm10.chr8                C 0 I 440
s canFam3.chr16             18048922 69 -  59632846 ----------ATAGGGCCCTTGTGATACTTATGTTCCCCACCTAAACAG-CAAGCTTCAAGTTCCAC-AAAGGCA--AGATCA
i canFam3.chr16            C 0 C 0

a score=6570.000000
s hg38.chr4_KI270925v1_alt    367331 2 +    555799 GA
s panTro4.chr4             193070010 2 + 193495092 GA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198160471 2 + 198332218 GA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113838307 2 + 115148730 CA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183749419 2 + 184069350 GA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189141887 2 + 189454096 GA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178560670 2 + 178775436 GA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135501182 2 + 135778131 GA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190605749 2 - 190850796 GA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18048991 2 -  59632846 GA
i canFam3.chr16            C 0 I 62
e mm10.chr8                 87755106 440 - 129401213 I

a score=1631.000000
s hg38.chr4_KI270925v1_alt    367333 4 +    555799 G-TCC
s panTro4.chr4             193070012 4 + 193495092 G-TCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198160473 4 + 198332218 G-TTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113838309 5 + 115148730 GCTCT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183749421 5 + 184069350 GCTCC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189141889 5 + 189454096 GCTCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178560672 5 + 178775436 GCTCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135501184 5 + 135778131 GCTCC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190605751 4 - 190850796 GCTC-
i calJac3.chr3             C 0 I 4
e mm10.chr8                 87755106 440 - 129401213 I
e canFam3.chr16             18048993 62 -  59632846 I

a score=965475.000000
s hg38.chr4_KI270925v1_alt    367337 468 +    555799  
s panTro4.chr4             193070016 467 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198160477 468 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113838314 468 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183749426 454 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189141894 464 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178560677 463 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135501189 455 + 135778131  
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87755106 440 - 129401213 I
e canFam3.chr16             18048993  62 -  59632846 I
e calJac3.chr3             190605755   4 - 190850796 I

a score=518898.000000
s hg38.chr4_KI270925v1_alt    367805 185 +    555799 AGCCAGCACTGGACACTCAAAGTCTCTTGTGCAATAAGCACTCAATAAATAGTGGTgaaaggaaaagggtggaaaggaggagggaagagaagaaaggacaaagaaagagaggaaaagaagg-aaaggagggtgggaggg----aggaagaaagagagggagggagcaagaagggagggaggga----aaaatgt
s panTro4.chr4             193070483 192 + 193495092 AGCCAGCACTGGACACTCAAAGTCTCTTATGCAATAAGCACTCAATAAATATTGGTgaaaggaaaagggtggaaaggaggagggaagagaagaaaggacaaagaaagagaggaaaagaagg-aaaggagggtgggagggaggaaggaagaaagagagggagggagcaagaagggagggatggaggg-aaaatgt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198160945 193 + 198332218 AGCCAGCACTGGACACTCAAAGTCTCTTATGCAATAAGCACTCAATAAATATTGGTGAAAGGAAAAGGGTGGAAAGGAGGAGGGAAGAGAAGAAAGGACAaagaaagagaggaaacaaagg-aaaggagggtgggagggaggaaggaagaaagagagggagggagcaagaagggagggagggagggaaaaatgt
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113838782 193 + 115148730 AGccagcactggacacgcaaagtctcttatgcaataagcgctcagtaaatattggtgaaaggaaAagggtggaaaggaggagggaagagaagaaaggacaaacaaagagaggaaaagaagg-aaaggagggtgggagggaggaaggaagaaagagagggagggagcaagaagggagggagggaaggaaaaatgt
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183749880 191 + 184069350 AGTCAGCCCTGGACACTCAAATTCTCTTATGCAATAAGCACTCTATAAATATTGGTgaaaggaaaggggtggaaaggaggagggaagagacgaaagggcaaagaaagagaggaaaagaagg-aaaggagggtgggagggaggaaggaagaaagaga--gagggagcaagaagggagggaagaaggggaaaatgt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189142358 191 + 189454096 AGTCAGCCCTGGACACTCAAATTCTCTTATGCAATAAGCACTCTATAAATATTGGTgaaaggaaaggggtggaaaggaggagggaagagacgaaagggcaaagaaagagaggaaaagaagg-aaaggagggtgggagggaggaaggaagaaagaga--gagggagcaagaagggagggaagaaggggaaaatgt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178561140 189 + 178775436 AGTCAGCCCTGGACACTCAAATTCTCTTATGCAATAAGCACTCTATAAATATTGGTgaaaggaaaggggtggaaaggaggagggaagagacgaaagggcaaagaa--agaggaaaagaagg-aaaggagggtgggagggaggaaggaagaaagaga--gagggagcaagaagggagggaagaaggggaaaatgt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135501644 192 + 135778131 AGTCAGCACTGGGCACTCAAATTCTCTTATGCAATAAGCACTCTATAAATATTGGTGAAAGGAAAGGGGTGgaaaggaggagggaagagaagaaagggcaaagaaagagaggaaaagaaggaaaaggagggtgggagggaggaaggaagaaagaga--gagggagcaagaagggagggaagaagggaaaaaTGT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190605759 165 - 190850796 AGCCAGCACTGGACACTCAGAGGCTCCTGTGCA-----------GTAAACAGTGGTGAGAAGAAAAGGGTggagaggaggagggaagagaagaaagggcaaagga---------aaggagg-aaaggagggcaggagggaggaaggaagacggggacggagggagcactaaaggaggga--------gaaacgt
i calJac3.chr3             I 4 C 0
e mm10.chr8                 87755106 440 - 129401213 I
e canFam3.chr16             18048993  62 -  59632846 I

a score=54040.000000
s hg38.chr4_KI270925v1_alt    367990 18 +    555799 agggtgggtgggcaggag
s panTro4.chr4             193070675 18 + 193495092 agggtgggtgggcaggag
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198161138 18 + 198332218 agggtgggtgggcaggag
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113838975 18 + 115148730 atggtacgtgggcaggag
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183750071 18 + 184069350 agggtgggtgggcaggag
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189142549 18 + 189454096 agggtgggtgggcaggag
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178561329 18 + 178775436 agggtgggtgggcaggag
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135501836 18 + 135778131 AGGGTGGGTAGGCAGGAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190605924 13 - 190850796 agggt-----ggcaggag
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87755546 18 - 129401213 aggaggggttcacatgag
i mm10.chr8                I 440 C 0
e canFam3.chr16             18048993 62 -  59632846 I

a score=4758512.000000
s hg38.chr4_KI270925v1_alt    368008 1393 +    555799  
s panTro4.chr4             193070693 1389 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198161156 1395 + 198332218  
i ponAbe2.chr4             C 0 I 2570
s nomLeu3.chr7b            113838993 1395 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183750089 1401 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189142567 1401 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178561347 1401 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135501854 1378 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190605937 1368 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87755564 1309 - 129401213  
i mm10.chr8                C 0 I 4
s canFam3.chr16             18049055 1456 -  59632846  
i canFam3.chr16            I 62 C 0

a score=17157.000000
s hg38.chr4_KI270925v1_alt    369401 10 +    555799 atacaagcca
s panTro4.chr4             193072082 10 + 193495092 atacaagcca
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113840388  8 + 115148730 --ACAAGCCA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183751490 10 + 184069350 ATACAAGCCA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189143968 10 + 189454096 atacaagcca
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178562748 10 + 178775436 ATACAAGCCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135503232 10 + 135778131 atacaagcca
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190607305 10 - 190850796 ATACAAAGAA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87756877  6 - 129401213 GTACAA----
i mm10.chr8                I 4 I 1
s canFam3.chr16             18050511  8 -  59632846 ATTCACAC--
i canFam3.chr16            C 0 C 0
e ponAbe2.chr4             198162551 2570 + 198332218 I

a score=82768.000000
s hg38.chr4_KI270925v1_alt    369411 32 +    555799 aaacacaa---gcaAATCATGAGGATAAGGCTGAA
s panTro4.chr4             193072092 20 + 193495092 aaacacaa---gcAAATCA------------TGAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198165121 32 + 198332218 AAACACAA---GCAAATCGTGAGGATAAGGCTGAA
i ponAbe2.chr4             I 2570 C 0
s nomLeu3.chr7b            113840396 32 + 115148730 AAACACAA---GCAAATCATGAGGATAAGGCTGAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183751500 32 + 184069350 AACCACAA---GCAAATCATGAGGATAAGGCTGAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189143978 32 + 189454096 aaccacaa---gcaAATCATGAGGATAAGGCTGAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178562758 32 + 178775436 AACCACAA---GCAAATCATGAGGATAAGGCTGAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135503242 32 + 135778131 aaccacaa---gcaAATCGTGAGGATAAGACTGAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190607315 31 - 190850796 -AAATTTT---GCAAATCATGATGAGAAGACTGaa
i calJac3.chr3             C 0 I 547
s mm10.chr8                 87756884 32 - 129401213 AAAATCTT---ACTAATTATAAAAACAAGAATGAG
i mm10.chr8                I 1 C 0
s canFam3.chr16             18050519 35 -  59632846 ATACACAAATTGTTAATCATAAGAGTAATAGCAAA
i canFam3.chr16            C 0 C 0

a score=280354.000000
s hg38.chr4_KI270925v1_alt    369443 109 +    555799 TTTTAAATCTTGATTCCAAAAGCCACTCTCCTATTCTGGTT----AGAAAAATAACAAAGCTATGTTCTGTCTTTTATCACTGCACATTTAGGCCACAATCATTCAAG-TGTTT
s panTro4.chr4             193072112 109 + 193495092 TTTTAAATCTTGATTCCAAAAGCCACTCTCCTATTCTGGTT----GGAAAAATAACAAAGCTATGTTCTGTCTTTTATCACTGCACATTTAGGCCACAATCATTCAAG-TGTTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198165153 109 + 198332218 TTTTAAATCTTGATTCCAAAAGCCACTCTCCTATTCTGGTT----GGAAAAATAACAAAGCTGTGTTCTGTCTTTTATCACTGCACATTTAAGCCACAATCATTCAAG-TGTTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113840428 109 + 115148730 TTTTAAATCTTGGTTCCAAAAGCCACTCCCCTATTCTGGTT----GGAAAAATAATAAAGCTATGTTCCGCCTTTCATCACTGCACATTCAGGCCACAATCATTGAAG-TGTTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183751532 109 + 184069350 TTTTAAATCCTGATTCCAAAAGCCCCTCTCCTGTTCTGGTT----GGAAAAATAACAAAGCTATGTTCTGTCTTTTGTCACTGCACATTTAGGCCACAATCACTCGAG-TGTTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189144010 109 + 189454096 TTTTAAATCCTGATTCCAAAAGCCCCTCTCCTGTTCTGGTT----GGAAAAATAACAAAGCTATGTTCTGTCTTTTGTCACTGCACATTTAGGCCACAATCACTCGAG-TGTTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178562790 105 + 178775436 TTTTAAATCTTGATTCCAAAAGCCCCTCTCCTATTCTGGtt----ggaaaaataacaaagctaTGT----TCTTTTGTCACTGCACATTTAGGCCACAATCACTCGAG-TGTTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135503274 109 + 135778131 TTTTAAATCTTGATTCCAAAAGCCCCTCTTCTATTCTGGTT----GGAAAAATAACAAAGCTGTGTTCTGTCTTTTGTCACTGCACATTTAGGCCACAGTCACTCAAG-TGTTT
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87756916 106 - 129401213 TTTTAAGCCTTGATTCTAAAAACCATTCACCTCTTCTTGTTGATGGGAAATATAAT-------TCCCCTCTGTTTTTTCGGTACA-ATTCACACTGCACTTATTTAAACTGTTT
i mm10.chr8                C 0 I 3045
s canFam3.chr16             18050554  52 -  59632846 -TTTAAATCTAGATTCTTAAAGCCACTC------TCAGGTT------------------------------------------------------ACAATAATTGACA-TGTTT
i canFam3.chr16            C 0 I 1
e calJac3.chr3             190607346 547 - 190850796 I

a score=198945.000000
s hg38.chr4_KI270925v1_alt    369552 78 +    555799 TGCCAACAATGAGCACAGCACAAGGTACCAGGGGGCAATGGGTAGACAACCTTTCGACAGCTTATTCCAGCA--CAGACT
s panTro4.chr4             193072221 78 + 193495092 TGCCAACAATGAGCACAGCACAAGGTACCAGAAGGCAATGGGTAGACAACCTTTCGACAGCTTATTCCAGCA--CAGACT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198165262 78 + 198332218 TGCCAACAATGAGCACAGCACAAGGTACCAGGAGGCAATGGGTAGACAACCTTTGGACAGCTTATTCCAGCA--CAGACT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113840537 78 + 115148730 TGCCAATAATGAGCGCAGCACAAGGTACCAGGAGGAAATGGGTAGACAACCTTTGGACAGCTTATTCCAGCA--CAGACT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183751641 78 + 184069350 CACCAACAATGAGCCCAGCACAAGGTACCAGGAGGCAATGGGCAGGCAACCTCCGGACAGCTTATTCCAGCA--CATACT
i rheMac3.chr5             C 0 I 74
s macFas5.chr5             189144119 78 + 189454096 CACCAACAATGAGCCCAGCACAAGGTACCAGGAGGCAATGGGCAGGCAACCTCTTGACAGCTTATTCCAGGA--GGCACT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178562895 78 + 178775436 CACCAACAATGAGCCCAGCACAAGGTACCAGGAGGCAATGGGCAGGCAACCTCTGGACAGCTTATTCCAGGA--CGCACT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135503383 78 + 135778131 CACCAACAATGAGCCCAGCACAAGGTACCAGGAGGCAATGGGCAGGCAGCCTCTGGACAGCTTATTCCAGCA--CACACT
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             18050607 80 -  59632846 CACAAACAGCTAGAACAGCACCAGCTACCAGAAGGTAATAGGTAGATATTTGTTGGACAGCTTAGATCATCACCCAAACT
i canFam3.chr16            I 1 C 0
e mm10.chr8                 87757022 3045 - 129401213 I
e calJac3.chr3             190607346 547 - 190850796 I

a score=3756.000000
s hg38.chr4_KI270925v1_alt    369630 4 +    555799 GATG
s panTro4.chr4             193072299 4 + 193495092 CACG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198165340 4 + 198332218 CACG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113840615 4 + 115148730 CACG
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189144197 4 + 189454096 CACA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178562973 4 + 178775436 CACA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135503461 4 + 135778131 CACA
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             18050687 4 -  59632846 AGTG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87757022 3045 - 129401213 I
e calJac3.chr3             190607346 547 - 190850796 I
e rheMac3.chr5             183751719 74 + 184069350 I

a score=1328616.000000
s hg38.chr4_KI270925v1_alt    369634 521 +    555799  
s panTro4.chr4             193072303 522 + 193495092  
i panTro4.chr4             C 0 I 21994
s ponAbe2.chr4             198165344 526 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113840619 526 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183751793 512 + 184069350  
i rheMac3.chr5             I 74 C 0
s macFas5.chr5             189144201 512 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178562977 512 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135503465 512 + 135778131  
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             18050691 570 -  59632846  
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87757022 3045 - 129401213 I
e calJac3.chr3             190607346 547 - 190850796 I

a score=920516.000000
s hg38.chr4_KI270925v1_alt    370155 513 +    555799  
s ponAbe2.chr4             198165870 499 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113841145 499 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183752305 499 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189144713 499 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178563489 506 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135503977 500 + 135778131  
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             18051261 435 -  59632846  
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87757022 3045 - 129401213 I
e calJac3.chr3             190607346 547 - 190850796 I
e panTro4.chr4             193072825 21994 + 193495092 I

a score=487736.000000
s hg38.chr4_KI270925v1_alt    370668 300 +    555799 TGCTCTCAGTgtgacatcagagagaaaccagaatgggacttcactgacatcactcaccaccacagaaattcaactagcagctctccacaggcaagaataccatcgtgcatgtcccagaattcaggactaaggctgagacaca----ctcctggaccccagagctaagaaaagctgttgcaatggtaaaaagtggagagagatgttgagcgcacactcctccccaacctggcagagcctcacatgcagagattcctctggatccgcagttgcacggtgagaaagtgagttggaggcagaagttct
s ponAbe2.chr4             198166369 297 + 198332218 TGCTCTCAGTgtgacattagagagaaaccagaatgggacttcactgacatcactcaccaccacagaaattcaa---gcagctctccacaggcaagaataccattgtgcatgtcccagaactcaggactaaggctgagacaca----ctcctggaccccagagctaagaaaagctgttgcaatggtaaaaagtggagagagatgttgagcgcacactcctccccaacctggcagagcctcacatgcagagattcctctggatccacagttgcacagtgagaaagtgagttggaagcagaagttct
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113841644 304 + 115148730 TGCTTTCAGTgtgacatcagagaggaaccagaatgggactttgctgacgtcactcacaaccacagaaattcaactagcagctctccacaggcaagaataccatcgtgcacgtcccagaactcaggactatggcgggacctcagagctctctggaccccagagctaagaaaagctgttgcaatggtacaaagtgaagcgagatgttgagcgcgcactcctccccaacctggcagagcctcacatgcagagattcgtctggatctgcagttgcacagtgagaaagtgagttggacgcagaagttct
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183752804 297 + 184069350 TGCTCTCGGTGTGACATCAGAGAGACACCAGAATGGGGCTTCGCTGACGTCACTCACCACCA-GGGAATTCAACCAGCAG--CTCCACAGGCACGAACACCATCGCGCGTGTCCCAGAGCTCAGGACCAAGGCGGAGACACG----GTCCTGGACCCCACAGCTAAGAAAAGCTGCTGCAGTGGTGAAAAGTGGAGAGCGATGCTGACCGCACACTCCTCCCCAGCCTGGCAGAGCCTCACACGCAGAGGTTCCTCTGGATCTGCCATTGCACAGTGAGAAAGTGAGTTGGAGGCAGAAGTTCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189145212 297 + 189454096 TGCTCTCGGTGTGACATCAGAGAGACACCAGAATGGGGCTTCGCTGACGTCACTCACCACCA-GGGAATTCAACCAGCAG--CTCCACAGGCACGAACACCATCGCGCGTGTCCCAGAGCTCAGGACCAAGGCGGAGACACG----GTCCTGGACCCCACAGCTAAGAAAAGCTGCTGCAGTGGTGAAAAGTGGAGAGCGATGCTGACCGCACACTCCTCCCCAGCCTGGCAGAGCCTCACACGCAGAGGTTCCTCTGGATCTGCCATTGCACAGTGAGAAAGTGAGTTGGAGGCAGAAGTTCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178563995 297 + 178775436 TGCTCTCGGTGTGACATCAGAGAGACACCAGAATGGGACTTCGCTGACGTCACTCACCACCA-GGGAGTTCAGCCAGCAG--CTCCACAGGCAAGAACACCATCGTGCGTGTCCCGGAGCTCAGGACCAAGGCGGAGACACG----GTCCTGGACCCCACAGCTAAGAAAAGCTGCCGCAGTGGTGAGAAGTGCAGAGCCATGCTGACCGCACACTCCTCCCCAGCCTGGCAGAGCCTCACACGCAGAGGTTCCTCTGGATCTGCCGTTGCACAGTGAGAAAGTCAGTTGGAGGCAGAAGTTCT
i papAnu2.chr5             C 0 I 121
s chlSab2.chr7             135504477 294 + 135778131 TGCTCTCGGTGTGACATC--AGAGACACCAGAATGAGACTTCGCTGACGTCACTCACCACCA-GGGAGTTCAACCAGCAG--CTCCACAGGCGCGAACACCATCGCGCGTGTCCCGCAGCTCAGGACCAAGGCGGAGACACG----GTCCTGGACCCCACAGCTAAGAAAAGCTGCTGC-GTGGTGAAAAGTGGAGAGCGATGCTGACCGCACActcctccccaacctggcagagcctcacacgcagaggttcctctggatctgccgttgcacagtgagaaagtgagttggaggcagaagttct
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87757022 3045 - 129401213 I
e canFam3.chr16             18051696   0 -  59632846 C
e calJac3.chr3             190607346 547 - 190850796 I
e panTro4.chr4             193072825 21994 + 193495092 I

a score=12203.000000
s hg38.chr4_KI270925v1_alt    370968 9 +    555799 gcttcccca
s ponAbe2.chr4             198166666 9 + 198332218 gcttccccg
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113841948 9 + 115148730 gcttccgca
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183753101 9 + 184069350 CCTTCCCTA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189145509 9 + 189454096 CCTTCCCTA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178564413 9 + 178775436 GCTTCCCCA
i papAnu2.chr5             I 121 C 0
s chlSab2.chr7             135504771 9 + 135778131 gcttccccg
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87757022 3045 - 129401213 I
e canFam3.chr16             18051696 0 -  59632846 C
e calJac3.chr3             190607346 547 - 190850796 I
e panTro4.chr4             193072825 21994 + 193495092 I

a score=269971.000000
s hg38.chr4_KI270925v1_alt    370977 244 +    555799 ccattctgggcccctttgcaggagctcacgcctgtcttgtcccacaggaaacgct-------------------------------------------------------------TCCCCACGATTCTGGGCCCCTTTGCA----------------------------------------GGAGCTCACGCCTGTCTTGTCCCACGGGAAACGCTCCCCCGCCATTCTGGGCCCCATTGCAGGAGCTCACGCCTGTCTTGTCCCACGGGAAACGCTTCCCCG----------------------------------------CCATTCTGGGCCCCTTTGCAGGAGCTCACGCCTGTCTTGTCCCACAGGAAACGCTTCCCCG
s ponAbe2.chr4             198166675 305 + 198332218 ccattctgggcccctttgcaggagctcatgcctgtcttgtcccacaggaaatgctCCCCCGCCATTCTGGGCCCCTTTGCAGGAGCTCACGCCTGTCTTGTGCCATAGGAAATGCATCCCCACCATTCTGGGCCCCTTTGCA----------------------------------------GGAGCTCACGCCTGTCTTGTCCCATGGGAAATgcatccccaccattctgggcccctttgcaggagctcatgcctgtcttgtcccacgggaaATGCTTCCCCA----------------------------------------CCATTCTGGGCCCCTTTGCAGGAGCTCACGCCTGTCTTGTGCCATAGGAAATGCATCCCCA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183753110 324 + 184069350 CCGTTCCCGGGCCCTCTGCCGGAGCTCGCGCCTGTCTCGTCCCACGGGAAACGCT-------------------------------------------------------------TCCCCATCATTCTGGGCCCGTTTGCGGGAGCTCACGCCTGTCTTGTCCATTCTGGGCCCCTCCGCAGGAGCTCGCGCCTGTCTCGTCCCACGGGAAACGCTTCCCCACCATTCTGGGCCCCTCCGCAGGAGCTCACGCCTGTCTCGTCCCACGGGAAACACTTCCCCACCTCTCTGGGCCCGTTTGCGGGAGCTCACGCCTGTCTTGTCCATTCTGGGCCCCTCCGCAGGAGCTCGCGCCTGTCTCGTCCCACGGGAAACGCTTCCCCA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189145518 284 + 189454096 CCGTTCCCGGGCCCTCTGCCGGAGCTCGCGCCTGTCTCGTCCCACGGGAAACGCT-------------------------------------------------------------TCCCCATCATTCTGGGCCCGTTTGTG----------------------------------------GGAGCTCGCGCCTGTCTCGTCCCACGGGAAACGCTTCCCCACCATTCTGGGCCCCTCCGCAGGAGCTCACGCCTGTCTCGTCCCACGGGAAACACTTCCCCACCTTTCTGGGCCCGTTTGCGGGAGCTCACGCCTGTCTTGTCCATTCTGGGCCCCTCCGCAGGAGCTCGCGCCTGTCTTGTCCCACGGGAAACGCTTCCCCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178564422 244 + 178775436 CCATTCTGGGCCCGTTTGCAGGAGCTCACGCCTGTCTCGTCCCACGGGAAACACT-------------------------------------------------------------TCCCCACCTTTCTGGGCCCGTTTGCA----------------------------------------GGAGCTCACGCCTGTCTCGTCCCATGGGAAACACTTCCCCACCTTTCTGGGCCCCTCCACAGGAGCTCGCGCCTGTCTTGTCCCACGGGAAACGCTTCCCCA----------------------------------------CCATTCTGGGCCCCTCCACAGGAGCTCGCACCTGTCTTGTCCCACGAGAAACGCTTCCCCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135504780 244 + 135778131 ccgttctgggcccctctgcaggagctcacgcctgtctcgtcccacgggaaacGCT-------------------------------------------------------------TCCCCGTCATTCTGGGCCCGTTTGTG----------------------------------------GGAGCTCACGCCTGTCTCGTCCCACGGGAAACGCTTCCCCATCATTCTGGGCCCGTTTGTGGGAGCTCACGCCTGTCTTGTCCCACGGGAAACGCTTCCCCA----------------------------------------CCATTCTGGGCCTGTTTGTGGGAGCTCACGCCTGTCTTGTCCCACGGGAAACGCTTCCCCA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87757022 3045 - 129401213 I
e canFam3.chr16             18051696   0 -  59632846 C
e calJac3.chr3             190607346 547 - 190850796 I
e nomLeu3.chr7b            113841957   0 + 115148730 C
e panTro4.chr4             193072825 21994 + 193495092 I

a score=130677.000000
s hg38.chr4_KI270925v1_alt    371221 75 +    555799 CCATTCTGGGCCCCTTTGCAGGAGCTCACGCCTGTCTTGTCCCATGGGAAACACAtccccaccattctgggccac
s ponAbe2.chr4             198166980 75 + 198332218 CCATTCTGGGCCCCTTTGCAGGAGCTCACGCCTGTCTTGTCCCATGGGAAACGCATCCCCACCATTCTGGGCCAC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113841957 75 + 115148730 ccattctgggcccctttgcaggagctcaggcctgtcttgtcccatgggaaacgcatccccaccattctgggcccc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183753434 75 + 184069350 CCATTCTGGGCCCCTCCGCAGGAGCTCGCGCCTGTCTCGTCCCACGGGAAACgcttccccaccattctgggcccc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189145802 75 + 189454096 CCATTCTGGGCCCCTCTGCAGGAGCTCGCGCCTGTCTCGTCCCACGGGAAACgcttccccaccattctgggcccg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178564666 75 + 178775436 CCATTATGGGGCCCTTTGCGGGAGCTCACGCCTGTCTTGTCCCACGAGAAACGCTTCCCCACCATTCTGGGCCCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135505024 75 + 135778131 CCATTCTGGGCCCGTTTGTGGGAGCTCACGCCTGTCTTGTCCCACAGGAAACGCTTCCCCACCATTCTGGGCCCC
i chlSab2.chr7             C 0 I 305
e mm10.chr8                 87757022 3045 - 129401213 I
e canFam3.chr16             18051696  0 -  59632846 C
e calJac3.chr3             190607346 547 - 190850796 I
e panTro4.chr4             193072825 21994 + 193495092 I

a score=1644502.000000
s hg38.chr4_KI270925v1_alt    371296  947 +    555799  
s ponAbe2.chr4             198167055  947 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113842032  950 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183753509  942 + 184069350  
i rheMac3.chr5             C 0 I 1354
s macFas5.chr5             189145877  943 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178564741 1010 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135505404  927 + 135778131  
i chlSab2.chr7             I 305 I 1379
e mm10.chr8                 87757022 3045 - 129401213 I
e canFam3.chr16             18051696    0 -  59632846 C
e calJac3.chr3             190607346  547 - 190850796 I
e panTro4.chr4             193072825 21994 + 193495092 I

a score=1146326.000000
s hg38.chr4_KI270925v1_alt    372243 1467 +    555799  
s ponAbe2.chr4             198168002 1466 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113842982 1464 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189146820 1367 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178565751 1366 + 178775436  
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87757022 3045 - 129401213 I
e canFam3.chr16             18051696    0 -  59632846 C
e calJac3.chr3             190607346  547 - 190850796 I
e chlSab2.chr7             135506331 1379 + 135778131 I
e rheMac3.chr5             183754451 1354 + 184069350 I
e panTro4.chr4             193072825 21994 + 193495092 I

a score=14895.000000
s hg38.chr4_KI270925v1_alt    373710 55 +    555799 gaaataaggtaggcgcagaaagacaaataccccatgatctcactggcatgtgaaa
s ponAbe2.chr4             198169468 55 + 198332218 gaaataaggtaggcgcagaaaaacaaataccccatgatctcactggcatgtgaaa
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113844446 55 + 115148730 gaaataaggcaggcgcagaaagacaaatatcccatgatctcactggcatgtgaaa
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87757022 3045 - 129401213 I
e canFam3.chr16             18051696  0 -  59632846 C
e calJac3.chr3             190607346 547 - 190850796 I
e chlSab2.chr7             135506331 1379 + 135778131 I
e papAnu2.chr5             178567117  0 + 178775436 C
e macFas5.chr5             189148187  0 + 189454096 C
e rheMac3.chr5             183754451 1354 + 184069350 I
e panTro4.chr4             193072825 21994 + 193495092 I

a score=126970.000000
s hg38.chr4_KI270925v1_alt    373765 365 +    555799 tctaataaggttgaactcatagaaacaggaagtagaatgatggttaccagaggctgacaggtgcggggtgtgggaagacagggagtgaggagttgatgatcaaagagaacaaagtttcagatagacagagggttggtgatccattgcatagcaaggtactgt----agtcagtaatgatgtgtcatatatttcagaataactgagagcataaatttcaattgtctcaccat---gaaagagaacaggtaagcaaggcgatgaatat----gttagcttgatctaattatttcatcttgtatacaattatcaaaatatcacattgtaccccacaaatgtatacagttatgatttgtcaatcaaaaCAAATGTTAATA
s ponAbe2.chr4             198169523 365 + 198332218 tctaataaggttgaactcacagaaacaggaagtagaatgattgttaccagaggctgataggtgcggggtgcaggaatacagggagtggggagttgatgatcaaagagaacaaagtttcagatagacagagggttggtgatccattgcatagcaaggtactgt----agtcagtaatgatgtgtcatatatttcagaataactaagagcataaatttcaattgtctcaccat---gaaagagaacaggtaagcaaggcgatgaatat----gttagcttgatctaattatttcatcttgtatacaattatcaaaatatcacattgtaccccacaaatgtatacagttgtgatttgtcaatcaaaaCAAATATTAATA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113844501 365 + 115148730 tctaataaggttgaactcatagaaacaggaagtagaatgatggttaccagaggctgacaggtgcggggtgcgggaagacagggagtggggagttgatgatcaaagagaacaaagtttcagatagacagagggttggtgatccactgcatagcaaggtactgt----agtcagtaatgatgtgtcatgtatttcagaataactaagagcataaatttcaattgtctcaccat---gaaagagaacaggtaagcaaggcgatgaatat----gttagcttgatctaattatttcatcttgtatacaattatcaaaatatcacattgtaccccacaaatatatacagttatgatttgtcaatcgaaaCAAATATTAATA
i nomLeu3.chr7b            C 0 C 0
s mm10.chr8                 87760067 333 - 129401213 tttaatagaccaaAGTtcaaacaagtaaaaaatggaacaattcttgccagagtctgaaag---------aatgaaaagcagggaatg-ggagctattgatcaacaggtacagagtttcagata------------------------ataggaagagttttttgagagacaattacaatatgttacagatttcaaaataaataaaag---agagttcaaatgtcttactatgggggaaaagcataggtaagcagcatgacagatattgtattcaacttgatttagtcatcccatgctgcataaatatgtcacagcatcacactgcaccctataaat------aattacaatctgccaatcaaaaacaaTGCTGATA
i mm10.chr8                I 3045 C 0
e canFam3.chr16             18051696   0 -  59632846 C
e calJac3.chr3             190607346 547 - 190850796 I
e chlSab2.chr7             135506331 1379 + 135778131 I
e papAnu2.chr5             178567117   0 + 178775436 C
e macFas5.chr5             189148187   0 + 189454096 C
e rheMac3.chr5             183754451 1354 + 184069350 I
e panTro4.chr4             193072825 21994 + 193495092 I

a score=24701.000000
s hg38.chr4_KI270925v1_alt    374130 97 +    555799 ATAttttttgttctgagacagtctcactctgttgcccaggcagggatggggtggtgcaatcatggctcactgcagtctcaatctctcaggctcaagc
s ponAbe2.chr4             198169888 97 + 198332218 ATAttttttgttctgagacagtctcactctgttgcccaggcggggatgcggtggtgcaatcatggctcactgcagtctcaatctctcaggctcaagc
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113844866 95 + 115148730 ATAtttttttttctgagacagtct--ttctgttgcccaggctgggatgtggtggtgcaatcatggctcactgcagtctcaatctctcaggctcaagc
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87760400  0 - 129401213 C
e canFam3.chr16             18051696  0 -  59632846 C
e calJac3.chr3             190607346 547 - 190850796 I
e chlSab2.chr7             135506331 1379 + 135778131 I
e papAnu2.chr5             178567117  0 + 178775436 C
e macFas5.chr5             189148187  0 + 189454096 C
e rheMac3.chr5             183754451 1354 + 184069350 I
e panTro4.chr4             193072825 21994 + 193495092 I

a score=1302.000000
s hg38.chr4_KI270925v1_alt    374227 3 +    555799 gat
s ponAbe2.chr4             198169985 3 + 198332218 aat
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113844961 3 + 115148730 aat
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189148187 3 + 189454096 gac
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178567117 3 + 178775436 gac
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87760400 0 - 129401213 C
e canFam3.chr16             18051696 0 -  59632846 C
e calJac3.chr3             190607346 547 - 190850796 I
e chlSab2.chr7             135506331 1379 + 135778131 I
e rheMac3.chr5             183754451 1354 + 184069350 I
e panTro4.chr4             193072825 21994 + 193495092 I

a score=109712.000000
s hg38.chr4_KI270925v1_alt    374230 57 +    555799 cctcttgcctcagcctcctgagcagctggaactacagccacatgcaaccacactgga
s ponAbe2.chr4             198169988 57 + 198332218 cctcctgcctcagcctcctgagcagctggaactacagccacgtgcaaccacactgga
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113844964 57 + 115148730 cctcctgcctcagcctcctgagcagctggaactacagccacgtgcaaccacactgga
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183755805 57 + 184069350 cctcctgcctcagcctccggagcagctggaactacagccatgtgcaaccacactgga
i rheMac3.chr5             I 1354 C 0
s macFas5.chr5             189148190 57 + 189454096 cctcctgcctcagcctccggagcagctggaactacagccatgtgcaaccacactgga
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178567120 57 + 178775436 cctcctgcctcagcctccggagcagctggaactacagccacATGCAACCACACTGGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135507710 57 + 135778131 cctcctgcctcagcctccggagcagctggaactacagccacgtgcaaccacactgga
i chlSab2.chr7             I 1379 C 0
e mm10.chr8                 87760400  0 - 129401213 C
e canFam3.chr16             18051696  0 -  59632846 C
e calJac3.chr3             190607346 547 - 190850796 I
e panTro4.chr4             193072825 21994 + 193495092 I

a score=25900.000000
s hg38.chr4_KI270925v1_alt    374287 13 +    555799 ctaattttttaaa
s ponAbe2.chr4             198170045 13 + 198332218 ctaattttttaaa
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113845021 13 + 115148730 ctaattttttaaa
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183755862 13 + 184069350 ctaagtttttaag
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189148247 13 + 189454096 ctaagtttttaag
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178567177 13 + 178775436 ctaagtttttaag
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135507767 13 + 135778131 ctaagtttttaag
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87760400 13 - 129401213 CTAATTTCTAAAA
i mm10.chr8                C 0 C 0
e canFam3.chr16             18051696  0 -  59632846 C
e calJac3.chr3             190607346 547 - 190850796 I
e panTro4.chr4             193072825 21994 + 193495092 I

a score=226703.000000
s hg38.chr4_KI270925v1_alt    374300 135 +    555799 ttttgtgtagagatgggattttgctatgttgctcaggctggtcttgaactcctggactcaagctatcctccatccttggcctcccaaattgctaagcttacaggcaggagccGCTATATTCAGGCAACTTTTTT--A
s ponAbe2.chr4             198170058 137 + 198332218 ttttttgtagagatgggattttgctatgttgctgaggctggccttgaactcctggactcaagctatcctccatccttggcctcccaaattgctaagcttacaggcaggagctgctgcactcagGCATTTTTTTTTTA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113845034 130 + 115148730 ttttttgtagagatgggattttgctatgttgctcaggctggtcttgaactcctggactcgagctatcctccttccttggcctctcaaattgctaagcttacaggcaggagccgctgcactcagGCAATT-------a
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183755875 134 + 184069350 ttttttgtagagataggattttgctctgttgctcaagctggtcttgaactcctggactcaagctatcctccttccttggcctcccagattgctaagcttacatgcatgagccattgcacccagGCAATTTTTT---T
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189148260 134 + 189454096 ttttttgtagagataggattttgctctgttgctcaagctggtcttgaactactggactcaagctatcctccttccttggcctcccaaattgctaagcttacatgcatgagccattgcacccagGCAATTTTTT---T
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178567190 134 + 178775436 ttttttgtagagataggattttgctctgttgctcaagctggtcttgaactcctggactcaagctatcctccttccttggcctcccaaattgctaagcttacaggcatgagccattgcacccaggcaatttttt---a
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135507780 134 + 135778131 ttttttgtagagataggattttgctctgttgctcaagctggtcttgaactcctggactcaagctatcctccttccttggcctcccaaattgctaagcttacaggcatgagccattgcacccagGCAATTTTTT---T
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87760413   0 - 129401213 C
e canFam3.chr16             18051696   0 -  59632846 C
e calJac3.chr3             190607346 547 - 190850796 I
e panTro4.chr4             193072825 21994 + 193495092 I

a score=11090.000000
s hg38.chr4_KI270925v1_alt    374435  9 +    555799 A-------------AAAAACTA
s ponAbe2.chr4             198170195  9 + 198332218 A-------------AAAAACTA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113845164 22 + 115148730 aaaaaaaaaaaaagaaaaaCTA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183756009  9 + 184069350 A-------------AAAAACTA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189148394  9 + 189454096 A-------------AAAAACTA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178567324  9 + 178775436 a-------------aaaaacta
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135507914  9 + 135778131 A-------------AAAAACTA
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87760413  7 - 129401213 ---------------AAACCTC
i mm10.chr8                C 0 C 0
e canFam3.chr16             18051696  0 -  59632846 C
e calJac3.chr3             190607346 547 - 190850796 I
e panTro4.chr4             193072825 21994 + 193495092 I

a score=781873.000000
s hg38.chr4_KI270925v1_alt    374444 355 +    555799 TGT--TCTCTGCTGGTTTCTGTGACCTCGTCACATCATTGTCGTGGTCATTGATTCCTGAAGTGTGAACTCTAAATGCCTTTGTCTGGCTCCTAGGACCCTTGT-CTACATGCCCCACCATTGAATCTCATAGGTCCTCCCCTCACACCTTGCTTTTCGGTTGTGC-AAACCA--CTTATCAATTCCCAAAGAGGCTGAGCACACTCTAATCTttccttttctg------------------cccagat-tcctcccc-----gctaat---gctgattaacccttttccacctttcgaaat-tca-agacaaatgtctcctc--------ctctgtg------------------------------acagaattctgggccaccgtcagtgccttcctcttgcctgacaaatatcttgtcacactt
s ponAbe2.chr4             198170204 354 + 198332218 TGT--TCTCTGCTGGTTTCTGTGACCTCGTCACATCATTGTCGTGGTCATTGATTCCTGAAGTGTGAACTCTAAATGCCTTTGTCTGGCTCCCAGGACCCTTGT-CTACATGTCC-ACCATTAAATCTCAAAGGTCCTCCCCTCACACCTTGCTTTTCAGTTGTGC-AAACCA--CTTATCAATTCCCAAAGAGGCTGAGCACACTCTAATCTTTCCTTTTCTT------------------CCCAGAT-TCCCCTCC-----ACTAGT---GCTGATTAACCCTTTTCCACCTTTCGAAAT-TCT-AGGCAAATGTCTCCTT--------CTCTGTG------------------------------ACAGAACTCTGGGCCACCGTCAGTGACTTTCTCTTGCCTGACAAATATCTTGTCACACTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113845186 359 + 115148730 TGT--TATCTGCCGGTTTCTGTGACCTCGTCACATCATTGTCATGGTCATTGATTCCTGAAGTGTGAACTCTAAATGCATTTGTCTGGCTCCTAGGACCCTTGT-CTACATGCCC-ACCATTGAATCTCAAAGGTCCTCCCATCACACCTTGCTTTTCAGTTGTGG-AAACCA--CTTATCAATTCCCAACGAGGCTGAGCACACTCTAATCTTTCCTTTTCTG------------------TCCAGAT-TCCTCCTCACTAGACTAGT---Gctgattaacccttttccacgtttcggaat-tca-agacaaatgtctcctc--------ctctgtg------------------------------gcagaattctgggccaccatcaatgtcttcctcttgcctgacaaatatcttgtcacactt
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183756018 354 + 184069350 TGT--TCTCGGCTGGTTTTTGTGACCTGGTCACATCATTGTTGTGGTAATTGATTCCTGAAGTGTGAACTCTAAATGCCTTTGTCTGGCTCCTAGGACCCTTGT-CTACATATCC-ACCATTGAATCGCAAAGGTCCTCCCCTCACACCTTGCTTTTCAGTTGTGC-AAACCA--CTTATCAATTCCCAAAGAGGCTGGGCACACTCTAATCTTTCCTTTTCTG------------------CCCAGAT-TCCTCCCT-----ACTAGT---GCTAATTAACCCTTTTCCACCTTTTGAAAT-TCA-AGACAAATGTCTCCTC--------CTCTGTG------------------------------ACAGAATTCCAGGCCACCATCAGTGCCTCCCTGTTGCCTGAAAAATATCTTGTCACACTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189148403 354 + 189454096 TGT--TCTCGGCTGGTTTTTGTGACCTGGTCACATCATTGTTGTGGTAATTGATTCCTGAAGTGTGAACTCTAAATGCCTTTGTCTGGCTCCTAGGACCCTTGT-CTACATATCC-ACCATTGAATCGCAAAGGTCCTCCCCTCACACCTTGCTTTTCAGTTGTGC-AAACCA--CTTATCAATTCCCAAAGAGGCTGGGCACACTCTAATCTTTCCTTTTCTG------------------CCCAGAT-TCCTCCCT-----ACTAGT---GCTAATTAACCCTTTTCCACCTTTTGAAAT-TCA-AGACAAATGTCTCCTC--------CTCTGTG------------------------------ACAGAATTCCAGGCCACCATCAGTGCCTCCCTGTTGCCTGAAAAATATCTTGTCACACTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178567333 354 + 178775436 tgt--tCTCGGCTGGTTTTTGTGACCTGGTCACATCATTGTTGTGGTAATTGATTCCTGAAGTGTGAACTCTAAATGCCTTTGTCTGGCTCCTAGGACCCTTGT-CTACATGTCC-ACCATTGAATCGCAAAGGTCCTCCCCTCACACCTTGCTTTTCAGTTGTGC-AAACCA--CTTATCAATTCCCAAAGAGGCTGGGCACACTCTAATCTTTCCTTTTCTG------------------CCCAGAT-TCCTCCCC-----ACTAGT---GCTAATTAACCCTTTTCCACCTTTTGAAAT-TCA-AGACAAATGTCTCCTC--------CTCTGTG------------------------------ACAGAATTCTGGGCCACCGTCAGTGCCTCCCTGTTGCCTGAAAAATATCTTGTCACACTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135507923 354 + 135778131 TGT--TCTCGGCTGGTTTTTGTGACCTGGCCACATCATTGTTGTGGTAATTGATTCCTGAAGTGTGAACTCTAAATGCCTTTGTCTGGCTCCTAGGACCCTTGT-CTACATGTCC-ACCATTGAATTGCAAAGGTCCTTCCCTCACACCTTGCTTTTCAGTTGTGC-AAACCA--CTTATCAATTCCCAAAGAGGCTGGGCACACTCTAATCTTTCCTTTTCTG------------------CCCAGAT-TCCTCCCC-----ACTAGT---GCTAATTAACCCTTTTCCACCTTTTGAAAT-TCA-AGACAAATGTCTCCTC--------CTCTGTG------------------------------ACAGAATTCCAGGCCACCATCAGTGCCTCCCTGTTGCCTGAAAAATATCTTGTCACACTT
i chlSab2.chr7             C 0 I 130
s mm10.chr8                 87760420 396 - 129401213 TGTTCTCTCTGCTGGTGTCTGAGATTTTGGCAAATCATTGTCATGATCACTGACATTTTCAAGGTCAAATATGAATATCTCAGCCCGGCTTCCAAGGTCCTTGTCCTACATGTCT-ATCATTCAGTCTCTAAGGCCCTCCCATCACGTATTGCATTCCAACTATACGAAAACA--CTTGCAGATCCCCTAAGAGGTAGGCCTTGCTCCAGACTCTTCTTTTCTGCACATACTATCTGTTCTACCCAGGA-ACCTTACCCAGGGGCCCAT---GCAATGTGTCCTTTTTTAAAATGTACAAACATCA-AGGCACACATCTCCTCACAACGTACACTGTGACTA------------------------GAACAGAATTGTACATCATGGTTGGTGCCTCCTTCCTGCCTGACACGTAGCCTATAACACTT
i mm10.chr8                C 0 C 0
s canFam3.chr16             18051696 413 -  59632846 CAT--TCTCTTCTTGTTTCTGTGATTTCCTCACTTCGTGGGCATCATCACTGGTACTTGCACGATAAAATCTGAATACCTCTGTCCAGCTCCCAAGGCTCTTAT-CCACATGTCT-GCCATTGAATCCCAAAGGTcttccactcacacttcgctttccagccatgc-aagcaaactgtgtggattcccaaataagccaggtgctctctaaactcttctattctgcacatgccatctactctgcccagaagtccttccc-----accagcctacctactgagtccctacccaaatttcataat-tcagagaaaaatatctcctggcaact--tcctatg-ctactctctcacaacttcttatgttgcaaacagaaatttgtgctactct-ggtgtctcctacttgcatgacatagaacttctaacactt
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190607346 547 - 190850796 I
e panTro4.chr4             193072825 21994 + 193495092 I

a score=285282.000000
s hg38.chr4_KI270925v1_alt    374799 149 +    555799 cagtttctacacttg---ctatacctgtgtgttc---------------------------------------------------------------------atatg------------------------------------tctattacaacctcctctccatgcaaatggaaggccctggatctgggttctctgtacttttgtacaccgagagcccagtacagtgtctggcaattagttggtactaaataaCA
s ponAbe2.chr4             198170558 149 + 198332218 CAGTTTCTACACTTG---CTAtacctatgtgttc---------------------------------------------------------------------atatg------------------------------------tctattacaacctcctctccatgcaaatggaagcccctggatccgggttctccgtatttttgtacaccgagagcccagcacagtgtctggcaattagttggtactaaataaca
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113845545 149 + 115148730 cagtttctacacttg---ctatccctgtgtgttc---------------------------------------------------------------------atatg------------------------------------tctattacaacctcctctccatgcaagtggaaggccctgcatccgggttctctgtacttttgtgcaccgagagcccagcacagtgtctggcaattagttggaactaaataaCA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183756372 213 + 184069350 GAGTTTCTACACTTG---CTACACCTGTGTGTTCATATGCCTATTACAACCTCCTCTCCTTGCAAATGCAGTTTCTACACTTGCTATA----CCTGTGtgttcatatg------------------------------------cctattacaacctcctctccatgcaaatggaag-ccctggatccgagttctctgtatttttgtacactgagagcccagcacagtgtctggcaattagttgctactaaataaCA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189148757 213 + 189454096 GAGTTTCTACACTTG---CTACACCTGTGTGTTCATATGCCTATTACAACCTCCTCTCCTTGCAAATGCAGTTTCTACACTTGCTATA----CCTGTGTGTTCATATG------------------------------------CCTATTACAACCTCCTCTCCATGCAAATGGAAG-CCCTGGATCCGAGTTCTCTGTATTTTTGTACACTGAGAGCCCAGCACAGTGTCTGGCAATTAGTTGCTACTAAATAACA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178567687 213 + 178775436 CAGTTTCTACACTTG---CTACACCTGTGTGTTC----------------------------------------ATATGTCTATTACAACCTCCTCTCCTTGCAAATGCAGTTTCTACACTTGCTACACCTGTGTGTTCATATGCCTATTACAACCTCCTCTCCATGCAAATGGAAG-CCCTGGATCCGAGTTCTCTGTATTTTTGTACACTGAGagcccagcacagtgtctggcaatTAGTTGCTactaaataaca
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135508407 148 + 135778131 CAGTTTCTACACTTG---CTATACCTGTGTGTTC---------------------------------------------------------------------ATATG------------------------------------CCTATTACAACCTCCTCTCCATGCAAATGGAAG-CCCTGGATCCGAGTTCTCTGCATTTTTGTACACTGAGAGCCCAGCACAGTGTCTGGCAATTAGTTGCTACTAAATAACA
i chlSab2.chr7             I 130 C 0
s mm10.chr8                 87760816 144 - 129401213 TAGCTTATAC-CTTG---CTGTATCTATTTGCTC---------------------------------------------------------------------ATGTA-------------------------------------TTATTGTAATCTCTTCCTCATTTGCATAGAAA-CCCTGACTCTGGATTCTC--TATTTTGATATGTCTACAGTAAAGCATGGTAACTAGAAAATAGATAAAACTAAATAAAA
i mm10.chr8                C 0 I 152
s canFam3.chr16             18052109 137 -  59632846 -------------tgaatctatatctaattgttc---------------------------------------------------------------------atat-------------------------------------tctcccatcaccccttc-ctgtgaaaataggagcccctgaatctggattctctgtatttttgtatagccagagcctagcatagtgcctggtaagtggctgatgctaaacaata
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190607346 547 - 190850796 I
e panTro4.chr4             193072825 21994 + 193495092 I

a score=35693.000000
s hg38.chr4_KI270925v1_alt    374948 16 +    555799 AAATATGGCAAAACAA
s ponAbe2.chr4             198170707 16 + 198332218 aaatatggtaaaacaa
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113845694 16 + 115148730 AAATATGGCAAAACAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183756585 16 + 184069350 AAATATGACAAAACAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189148970 16 + 189454096 AAATATGACAAAACAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178567900 16 + 178775436 aaatatgacaaaacaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135508555 16 + 135778131 AAATATGACAAAACAA
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87761112 16 - 129401213 aaagtttgcaagacca
i mm10.chr8                I 152 I 149
s canFam3.chr16             18052246 16 -  59632846 agagtttgtaaaataa
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190607346 547 - 190850796 I
e panTro4.chr4             193072825 21994 + 193495092 I

a score=241181.000000
s hg38.chr4_KI270925v1_alt    374964 110 +    555799 ATAAATAAAA-----TACATGATTTAA----------AAGCAGACAATGTAATTGTCATTTGAACAAGTTCTCCAACTTTATTCTATTACCTTTAAATTCTCTCT-TTT------TCCTTTCTTCCCCATCC-
s ponAbe2.chr4             198170723 110 + 198332218 ataaatAAAA-----TACATGATTTAA----------AAACAAACAACGTAATTGTCATTTGAACATGTTCTCCATCTTTATTCTATTACCTTTAAATTCTCTCT-TTT------TCCTTTCTTCCCCATCC-
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113845710 108 + 115148730 ATAAATAAAA-----TACACGATTTAA----------AAGCAAACAATGTAATTGTCATTTGAACAAGTTCTCCAACTTTATTCTATTACGTTTAAAT--TCTCT-TTT------TCCTTTCTTCTCCATCC-
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183756601 110 + 184069350 ATAACTAAAA-----TACATGATTTAA----------AAGCAAACAATGTAATTGTCATTTAAACAAGTTCTCCAACTTTATTCTATTACCCTTAAATTCTCTCT-TTT------TCCTTTCTTCCCCATCC-
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189148986 110 + 189454096 ATAAATAAAA-----TACATGATTTAA----------AAGCAAACAATGTAATTGTCATTTAAACAAGTTCTCCAACTTTATTCTATTACCCTTAAATTCTCTCT-TTT------TCCTTTCTTCCCCATCC-
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178567916 110 + 178775436 ataaataaaa-----tacatgatttaa----------aagcaaacaatgtaatTGTCATTTAAACAAGTTCTCCAACTTTATTCTATTACCCttaaattctctct-ttt------tcctttcttccccatcc-
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135508571 109 + 135778131 ATAAATAAAA-----TACATGATTTAA----------AAGCAAACAATGTAATTGTCATTTAAACAAGTTCTCCAACTTTATTCTATTACCCTTAAATTCTGTCT-TTT------TCCTTTCTT-CCCATCC-
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87761277 131 - 129401213 ATAAATAAAACTTTTTAAATGAGTGAGTTATTGTTCTAAGACAACAACATAATTATCAGCTAAACAAATCCTGTTAGCTCACTGAGTTACCTTTAAATTGTCTCT-CTTCTATTGCCCTCTTTTCACCATAA-
i mm10.chr8                I 149 I 1
s canFam3.chr16             18052262 100 -  59632846 ---------a-----taagtCATTTCA----------AAGCAAACA---TAATTATCATCTCAATGAATCCTCTAGCTATATTCCACTACCTTTAAATGCTCTCTGGTT------TTCCCTCTTCCCCACCCC
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190607346 547 - 190850796 I
e panTro4.chr4             193072825 21994 + 193495092 I

a score=333122.000000
s hg38.chr4_KI270925v1_alt    375074 116 +    555799 TTGC-AAATGAAAAGATCCATGTACTATCAACCTTCCTCTCAAGGCTTGGGGTTTTAATGAGTCAATGTAATAAATTTACGTGttttggagacgaaagagctgag--acagag--aggcta
s ponAbe2.chr4             198170833 115 + 198332218 TTGC-AAATGAAAAGATCCATGTACTATCAACCTTCCTCTCAAGGCTTGGGGTTTTAATGAGTCAATGTAATAAATTTAc-cgttttggagatgaaagagctgag--acagag--agacta
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113845818 116 + 115148730 TTGC-AAATGAAAAGATCCATGTACTATCGACCTTCCTGTCAAGGCTTGGGGTTTGAATGAGTCAACGTAATAAATTTAcctgttttggagacgaaagagctgag--acagag--aggcta
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183756711 116 + 184069350 TTGC-AAACAAAAAGATCCATGTACTATCAACCTTCCTCCCAAGGACTggggttttagtgagtcgatgtagtaaatttacctgttttggagatgaaacagctgag--acagag--aggcta
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189149096 116 + 189454096 TTGC-AAACAAAAAGATCCATGTACTATCAACCTTCCTCCCAAGGACTggggttttagtgagtcgatgtagtaaatgtacctgttttggagatgaaacagctgag--acagag--aggcta
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178568026 116 + 178775436 TTGC-AAACAAAAAGATCCATGTACTATCAACCTTCCTCCCAAGGACTGGGGTTTTAGTGAGTCGATGTAGTAAATTTACCTGTTTTGGAGATGAAACAGCTGag--acagag--aggcta
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135508680 116 + 135778131 TTGC-AAACAAAAAGATCCATGTACTATCAACCTTCCTCCCAAGGACTggggttttagtgagtcgatgtagtaaatttacctgttttggagatgaaacagctgag--acagag--aggcta
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190607893 116 - 190850796 TTAC-ACATGAAAAGACCCATGTACAATCAACCTTCCTCTCAAGGATTGGGGTTTTAATGAGTCACTGTAATAAATTTAcctgctttgaagatgaaagagctgag--acagag--aggcta
i calJac3.chr3             I 547 C 0
s mm10.chr8                 87761409 117 - 129401213 TTGTAAAACAGAAGGATGTGTATTCTTTAAACCTTCCTAGCAAGGATCCTAGTCTTAGTGAG--AGTATGACAAATTGATctgtttcagaaatgaaagaatggag--acagagataagcta
i mm10.chr8                I 1 C 0
s canFam3.chr16             18052362 118 -  59632846 TTAT-CAAGAAAAAGACTCATGATCTCTAAACCATCCTATCAAGGTGTGAGGTTGCTAGGAGCTAATACAATGAATTAGcctgtttcagagatgaagttgctgaggcacagag--aagcta
i canFam3.chr16            C 0 C 0
e panTro4.chr4             193072825 21994 + 193495092 I

a score=343164.000000
s hg38.chr4_KI270925v1_alt    375190 146 +    555799 agtaacttacccgagTAGGAGCTGCGACCTAAAGTCTGTATTTCTGACACTGCACTGATCCTAACCCAGGCAGTGA-AGGTCCAGGGAAGTGAAATAAGACACACTGGACCATGACGATACATGGGAGGGAAATCTGTGAAAGACA-G
s ponAbe2.chr4             198170948 146 + 198332218 agtaacttacccaagTAGGAGCTGTGACCTGAAGTCTGTATTTCTGACACTGCACTGATCCTAATCCAGGCAGTGA-AGGTCCAGGGAAGTGAAATAAGACACACTGGACCATGACGATACGTGGGAGGGAAACCTGTGAAAGACA-G
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113845934 146 + 115148730 agtaacctacccaagtaggagctgcgacctaaagtctgtatttctgacactgccctgatcctaacccaggcagtga-aggtccagggAAGTGAAATAAGACACACTGGACCATGACGATACGTGGGAGGGAAATCCGTGAAAGACA-G
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183756827 145 + 184069350 agtaacttacccaagTAGAAGCTGCGACCTAAAGTCTGTATTTCTGACACTGCACTAATACTAACCCAGGCAGTGA-AGGTCCGGGGAAGTGAAATAAGACACACTGGACCATGACAACATGTGGGAGGGAAA-CCATGAAAGACA-G
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189149212 145 + 189454096 agtaacttagccaagTAGAAGCTGCGACCTAAAGTCTGTATTTCTGACACTGCATTAATACTAACCCAGGCAGTGA-AGGTCGGGGGAAGTGAAATAAGACACACTGGACCATGACAATATGTGGGAGGGAAA-CCATGAAAGACA-G
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178568142 145 + 178775436 agtaacttacccaaggagAAGCTGCGACCTAAAGTCTGTATTTCTGACACTGCACTAATACTAACCCAGGCAGTGA-AGGTCCGGGGAAGTGAAATGAGACACACTGGACCATGACAATATGTGGGAGGGAAA-CCAtgaaagaca-g
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135508796 145 + 135778131 agtaacttacccaagTAGAAGCTGCGACCTAAAGTCTGTATTTCTGACACTGCACTAATACTAACCCAGGCAGTGA-AGGTCTGGGGAAGTGAAATGAGACACACTGGACCATGACAATATGTGGGAGGGAAA-CCATGAAAGACA-G
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190608009 128 - 190850796 attaacttacccaagTAGGAGCTGGGACCTAAAGTCTG--CTTCTAACACTGCACTGATACTAACCCAGGC-----------------AGTGAAATAAAACACACTGGACCATGAAGATAAGTGGGAGGGAAATCTGTAAAAGACA-G
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87761526 145 - 129401213 agtaactcactcaaATAAACTCTGTTTGTTAAAGTCTACA-TTCTAACA-TGCTCCAATACTAATCTAGACACTGAGAGGTCCAGGGGACAAGAGCAAGAAATACTGAACCATGGAAGCAAGAGGGGAACAGG-CTGGGAATGGCGCG
i mm10.chr8                C 0 C 0
e canFam3.chr16             18052480   0 -  59632846 C
e panTro4.chr4             193072825 21994 + 193495092 I

a score=492937.000000
s hg38.chr4_KI270925v1_alt    375336 207 +    555799 AGAAACAGAGCTTAGTGCCCAGGGTGGGATCTTAGGCTATTC-TGGGTGATGGTGAGTGGGCAGGCCAGCAGCATTAAAGCAGCAGT--AGGAGGCAGGGATGGGACCCTCGTCAT--AACCCGC---CTCTAAGGGAACTCACTGCAGGGTGAGCATGGCCCAT-CAGTGACCCGTCAGGCAGGTGTAGCAGATATTTTGCATGACTCTGATGCA
s ponAbe2.chr4             198171094 205 + 198332218 AGAAACAGAGCTTAGCGCCCAGGGTGGGATCTTAGGCAATTC-TGGGTGATGGTGAGTGGGCAGGCCAGCAGCATTAAAGCAGCAGT--AGGAGGCAAGGACGGCACCCTCGTCAT--AACCCAC---CTCTAAGGGAACTCACTGCAGGGTGAGCATGGCCCAG-CAGTGACCCATCAGGCAGGTGTAACAGATATTTTGCATGACT--GATGTA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113846080 207 + 115148730 AGAAACAGAGCTTAGCGCCCAGGGTGGGATCTTAGGCAAATC-TGGGTGATGGTGAGTGGGCAAGCCAGCAGCATTAAAGCAGCAGC--AGGAGGCCGGGATGAGACCCTCGTCAT--AACCCGC---CTCTAAGGGAACTCACTGCAGGGTGAGCATGGCCCAG-CAGTGACCCGTCAGGCAGGTGTAGCAGATATTTTGCATGACTCTGATGTA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183756972 205 + 184069350 AGAAACAGACCTTAGCGCCCAGGGTGGGCTCTTCGGCAATCC-CGGGTGATGGTGAGTGGACAGGCCAGCAGCATTAAAGCAGCAGT--GGGAGGCAGGGATGAGACCCTCGTCCT--AACCTGC---CTCTAAGGGAACTCACTGCAGCGTGAGCGTGGCCCAG-CAGTGACCC--CAGGGAGGTGTAGCAGATACTTTGCATGACTCTGATGTA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189149357 205 + 189454096 AGAAACAGACCTTAGCGCCCAGGGTGGGCTCTTCGGCAATCC-CGGCTGATGGTGAGTGGACAGGCCAGCAGCATTAAAGCAGCAGT--GGGAGGCAGGGATGAGACCCTCGTCCT--AACCTGC---CTCTAAGGGAACTCACTGCAGCGTGAGCGTGGCCCAG-CAGTGACCC--CAGGGAGGTGTAGCAGATACTTTGCATGACTCTGATGTA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178568287 205 + 178775436 agaaacagacCTTAGCGCCCAGGGTGGGCTCTTCGGCAATCC-CGGGTGATGGTGAGTGGACAGGCCAGCAGCATTAAAGCAGCAGT--GGGAGGCAGGGATGAGACCCTCGTCCT--AACCTGC---CTCTAAGGGAACTCACTGCAGCGTGAGCGTGGCCCAG-CAGTGAACC--CAGGGAGGTGTAGCAGATACTTTGCATGACTCTCATGTA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135508941 205 + 135778131 AGAAACAGACCTTAGCACCCAGGGTGGGCTCTTCGGCAATCC-CGGGTGATGGTGAGTGGACAGGCCAGCAGCATTAAAGCAGCAGT--GGGAGGCAGGGATGAGACCCTCGTCCT--AACCTGC---CTCTAAGGGAACTCACTGCAACGTGAGCGTGGCCCAG-CAGTGACCC--CAGGGAGGTGTAGCAGATACTTTGCATGACTCTCATGTA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190608137 206 - 190850796 AGAAACAG--CTTAACTCCTAGGGTGGGTTTTTAGGCAATCC-TGGGTGATGGTAAGTGGGCAGGCCAGCAGCATTAAAGCAGCAGT--GGGAGGCAGGGACAAGGCCCTCGTCATCACACCCAC---CTCCAAGGGAACTCGCTGCGGTGTGAGCACGGCCCAG-CAGTGACTG-TCATGTGGGTGTAGCAGACATTATGCTTGACTCTGATGTA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87761671 182 - 129401213 AGAGACAG---CCTGTGTACTGAGCAGGCTGTGAGGCAAACC-CTGTAAGATGTAAG-----GGCCCAGTACCA---------------GGGAAGCAAGCATGGGAGAGGCATTCT--GATA-GC---TGCTCAAG--ACTGAGTCACAAGTCAGCATGTTCCAGACAGGAACCTGTCAGAGAGGTACAGTGGAGGTTTTGCACGAACCTG--GCA
i mm10.chr8                C 0 C 0
s canFam3.chr16             18052480 207 -  59632846 agGAGCAGAGTCTAGCAATCAGAGTGGGCTCTTACAAGATCCTTGGAAGACAGTGAGTGGGGAATCCAGCTCCATTAATATAGGAATAAAAGAGTCAGTGGCAATGTCC-CTTTAT--GATATACAAATTTCACCTGAACTGACTGAAATATTAGCATCT------TAGTGATCAGTTAGATGGGGGTAGCAGATATTTTGCATGACTCTAATGTA
i canFam3.chr16            C 0 I 217
e panTro4.chr4             193072825 21994 + 193495092 I

a score=420592.000000
s hg38.chr4_KI270925v1_alt    375543 193 +    555799 CTGCTTCCATTTTT-T-AAGGGAGTGGTTGACTCACAGTC-GGTA-TACCGGGGGTGACCCAGGCTCTGGTCTGCCGCAGT--AACACTGGTCACATGCTCCCCGGAGCGCAATG----GTAGCTGGTTGAGCATCCTCACCAAGTATGGTTACCTGCTTCTCATTCTCACGG--ACACAGGCTTCTAACAACTTTTCCGATTGC
s ponAbe2.chr4             198171299 196 + 198332218 CTGCTTCCATTTTT-TTAAGGGAGTGGTTGACTCACAGTC-GGTA-TACAGGGGGTAACCCAGGCTCTGGTCTGCCGCAGT--AATACTGATCACATGCTCCCCGGAGCGCAGTG----GTAGCTGATTGAGCATCCTCACCAAGTATGGTTACCTGTTTCTCATTCTCACTGTCACACAGGCTTCTGACAACTTTTCCAATTGC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113846287 197 + 115148730 CTGCTTCCATTTTT-TTAAGGGAGTGGTTGACTCACAGTC-GGTACTACCGGGGTTGACCCAGGCTCTGGTCTGCCGCAGT--AACACTGGTCAAATTCTCCCCGGAGTGCAGTG----GTAGCTGATTGAGCATCCTCACCAAGTATGGTTACCTGCTTCTCATTCTCACTGACACACAGGCTTCTGACAACTTTTCCAATTGC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183757177 196 + 184069350 CTGCTTCCATTTTT-TAAAGGACGTGGTCGACTCCCAGTC-AGTACCACCGGGGGTGACGCCGTCTCTGGTCTGCTGCAGG--AACACTGGTCCAGTGCTCCCCGGCGGGTAACG----GTGGCTGATTAAGGATCCTCTCCAAGCACGCTCACCTGCTTCTC-TTCTCGCTGACACACGGGCTTCTGACAACTTTTCCAATTGC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189149562 196 + 189454096 CTGCTTCCATTTTT-TAAAGGACGTGGTCGACTCCCAGTC-AGTACCACCGGGGGTGACCCCGTCTCTGGTCTGCTGCAGG--AACACTGGTCCAGTGCTCCCCGGCGGGTAACG----GTGGCTGATTAAGGATCCTCTCCAAGCACGCTCACCTGCTTCTC-TTCTCGCTGACACACAGGCTTCTGACAACTTTTCCAATTGC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178568492 196 + 178775436 ctgcttccattttt-taaaggacGTGGTCGACTCCCAGTC-GGTACCACCGGGGGTGACCCCGTCTCTGGTCTGCTGCAGG--AACACTGGTCCAGTGCTCCCCGGCGGGTAACG----GTGGCTGATTAAGGATCCTCTCCAAGCACGCTCACCTGCTTCTC-TTCTCGCTGACACACAGGCTTCTGACAacttttccaattgc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135509146 196 + 135778131 CTGCTTCCATTTTT-TAAAGGACGTGGTCGACTCCTAGTC-GGTGCCACCGGGGGTGACCCCGTCTCTGGTCTGCTGCAGG--AACACTGGTCCAATGCTCCCCAGCGGGTAACG----GTGGCTGATTAAGGATCCTCTCCAGGCACGCTCACCTGCTTCTC-TTCTTGCTGACACACAGGCTTCTGACAACTTTTCCAACTGC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190608343 195 - 190850796 CTGCTTCCATTTTTCTAAAGGGAGTCCTTGACTCACAGTC-AGTACTAATGGCTCTGACCCAGGCTCAG---CACCGCAGG--AGCGCTGGTCAGACGTTCCCTGGAGCACAATG----GCTGCTTAGTGAGCATCCTCACCAAGCGCAGTTACCTGCTTCCTACTCTCACTGACACAGGCGCTTCTGACCACTTTTCCAATTGC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87761853 163 - 129401213 CTACAACTATTATT-CA---------GCTGATAC-----T-GGTATTACTGGATGTGGACT-GGCTCTGGTCTATGGCATC--TGCACCCGCCAAACGTTCCCTGGAGAGTGATGTTAAATAGTTTACTGAGTATCCACTGCAAGTA----GATCCGTTTCCTATTCTTCCTG-------------------CTTCCCCAACTAG
i mm10.chr8                C 0 C 0
s canFam3.chr16             18052904 196 -  59632846 CTGCTGTGTTTTTT---ACTGGAGCTGCTGACTCATAGTTAGGTATCACTGAAGGTGACCT-GGCTTTGTTCCACTGTACTTATACACTAGTCAAATGTTTCCTAGTGCAATGGG----ACAGCCAACCAAACATCCTCCCCAAATATAATTCTCTGTTTTTA-TTCTTCCTAACACATTTGTCTCTGACAACCTTTCCAATTAG
i canFam3.chr16            I 217 I 310
e panTro4.chr4             193072825 21994 + 193495092 I

a score=1939388.000000
s hg38.chr4_KI270925v1_alt    375736 741 +    555799  
s ponAbe2.chr4             198171495 743 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113846484 745 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183757373 739 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189149758 739 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178568688 737 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135509342 737 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190608538 731 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87762016 744 - 129401213  
i mm10.chr8                C 0 I 515
s canFam3.chr16             18053410 775 -  59632846  
i canFam3.chr16            I 310 C 0
e panTro4.chr4             193072825 21994 + 193495092 I

a score=1837901.000000
s hg38.chr4_KI270925v1_alt    376477 652 +    555799  
s ponAbe2.chr4             198172238 651 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113847229 708 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183758112 617 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189150497 622 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178569425 622 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135510079 621 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190609269 626 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87763275 619 - 129401213  
i mm10.chr8                I 515 C 0
s canFam3.chr16             18054185 766 -  59632846  
i canFam3.chr16            C 0 I 104
e panTro4.chr4             193072825 21994 + 193495092 I

a score=132096.000000
s hg38.chr4_KI270925v1_alt    377129  60 +    555799 CCTGCCTTTATCTCAG------------------------------------TGG--------------------------------------------------CAC-TCTCTTTCTGTCCCT------------------------------------------------AATAATGCACACTGTGATCCCAA
s ponAbe2.chr4             198172889  60 + 198332218 TCTGCCTTTATCTCAG------------------------------------TGG--------------------------------------------------CAC-TCTCTTTCTGTCCCT------------------------------------------------AATAATGCACACTGTGATCCCAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113847937  60 + 115148730 TCTGCCTTTATCTCAG------------------------------------TGG--------------------------------------------------CAC-TCTCTTTCTGTCCCT------------------------------------------------AATAATGCACACTGTGATACCAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183758729  60 + 184069350 TCTGCCTTCATCTCAG------------------------------------TGG--------------------------------------------------CAC-TGTCTTTCTGTCCCT------------------------------------------------AATAATGCACACTGTGATCCCAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189151119  60 + 189454096 TCTGCCTTCATCTCAG------------------------------------TGG--------------------------------------------------CAC-TGTCTTTCTGTCCCT------------------------------------------------AATAATGCACACTGTGATCCCAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178570047  60 + 178775436 TCTGCCTTTATCTCAG------------------------------------TGG--------------------------------------------------CAC-TCTCTTTCTGTCCCT------------------------------------------------AATAATACACACTGTGATCCCAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135510700  60 + 135778131 TCTGCCTTTATCTCAG------------------------------------TGG--------------------------------------------------CAC-TCTCTTTCTGTCCCT------------------------------------------------AATAATACACACTGTGATCCCCA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190609895  56 - 190850796 GCTGCTTTTATCTCAG------------------------------------TGG--------------------------------------------------CAC---TCTTTCTGTCTCT------------------------------------------------AATAATGCACA--GTGATCCCAA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87763894  61 - 129401213 CCTGCCTTCATCTCCT------------------------------------TAA--------------------------------------------------CCTTTCCCTTGCTGGCCCA------------------------------------------------AAGGATGGAACCTGGGACTCTGA
i mm10.chr8                C 0 I 429
s canFam3.chr16             18055055 194 -  59632846 tctgccttcagctcaggtctgaattcaagggtcctaggatcaggttccatattgggttccctgccccacaggaagtctgtttattactctgcccctccccccactcat-tctctttctgtgtttctctcttgctcactttctctctcaaataaataaataaattctttaaaaaaaaATGCACCTTGTGACCCCAT
i canFam3.chr16            I 104 C 0
e panTro4.chr4             193072825 21994 + 193495092 I

a score=38371.000000
s hg38.chr4_KI270925v1_alt    377189 17 +    555799 --ACCTGTACCTGTGAGTC
s ponAbe2.chr4             198172949 17 + 198332218 --ACCTGTACCTGCAAGTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113847997 17 + 115148730 --ACCTGTACCTGCGAGTC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183758789 17 + 184069350 --ACCTGCACCTGTGAGTC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189151179 17 + 189454096 --ACCTGCACCTGTGAGTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178570107 17 + 178775436 --ACCTGCACCTGTGAGTC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135510760 17 + 135778131 --ACCTGCACCTGTGAGTC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190609951 17 - 190850796 --ATCCACACCTGGGAGTA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18055249 19 -  59632846 ACCTCTCTACCTATGAACA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87763955 429 - 129401213 I
e panTro4.chr4             193072825 21994 + 193495092 I

a score=4329963.000000
s hg38.chr4_KI270925v1_alt    377206 1757 +    555799  
s ponAbe2.chr4             198172966 1778 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113848014 1823 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183758806 1738 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189151196 1740 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178570124 1749 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135510777 1757 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190609968 1688 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87764384 2008 - 129401213  
i mm10.chr8                I 429 I 2676
s canFam3.chr16             18055268 1801 -  59632846  
i canFam3.chr16            C 0 C 0
e panTro4.chr4             193072825 21994 + 193495092 I

a score=961081.000000
s hg38.chr4_KI270925v1_alt    378963 433 +    555799 GAAACTga-------tggaaagttgggagaggagaatttcaggcagagagagtggcacttgcaaaTAGGATCTGCTGTGAAGGAACAGATTTGTTCTCTCCCCT-------TGGATGG-TGCTCCGTGT-CTCTGTCCTTAATTAATACCCAGGCC-AGGCTTTCACTGGGCCCCATGGCACTGGCATGGGAC----------AAAGCTCTCCAGGCCTGTCTTGCCCAAAACACTGCTCGTACAACCCTTTATTGTG----CATGCATGCAGCCTCACTGAAGCTTCTACT-----------GGAAGAAACAGAAA-AACTACCACATAACAGGAAGACAGGGTAAAAAAAAAAGTGCTCCTGGTGGAATACATTA-------AGTTGCTAGTG--A-------TAATTAACCTTG---TTATTAAAAGCCACAGTAATTATTACACAAAAATAATGTAACCATGCAAAGTAACAAATCAAATGGACATGTTTG
s ponAbe2.chr4             198174744 428 + 198332218 GAAATTga-------tggaaagttgagagaagagaatttcaggcagagagagtggcacttgcaaaTAGGATCTGCTGTGAAGGGACGGATTTGTTCTCTCCCCT-------TGGATGG-TGCTCCGTGT-CTCTGTCCTTAATTAAGATCCAGGCC-AGGCTTTCATTGGGCCCCATGGCACTGGCCTGGGAT----------GAAGCTCTCCAGGCCT----TGCCCAAAACACTGCTCGTACAACCCTTTACTGTG----CATGCATGCAGCCTCACTGAAGCTTCTACT-----------GGAAGAAATAGAAA-AAATACCACATAACAGAAAGACAGGATAAAAAAAAA-GTGCTCCTGGTAGAATACATTA-------ACTTGCTAGTG--A-------TAATTAACCTTG---TTATTAAGAGCCACAGAAATTACTACACAAAAATAATGTAACCATGCAAAGTAACAAATCGAATGGACATGTTTA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113849837 432 + 115148730 GAAATTga-------tggaaagttgggagaagagaatttcaggcagagagagtggcacttgcaaaTAGGATCTGCTGTGAAGGGACAGATTTGTTCTCTCCCCT-------TGGATGG-TGCTCTATGTCCTTTGTCCTTAATTAAGATCCAGGCC-AGGCTTTCACTGGGCCCCATGGCACTGGCATGGGAC----------GAAGCTCTCCAGGCCTGCCTTGCCCAAAACACTGCTCATACAACCCTTTATTGTG----CATGCATGCAGCCTCACTGAAGCTTCTACT-----------GGAAGAAATAGAAA-AAATACCACATAACAGGAAGACAGGGTAAAAAAAA--GTGCTCCTGGTGGAATACATTA-------ACTTGCTAGTG--A-------TAATTATCCTTG---TTATTAAGAGCCACAGAAATTACTACACAAAAATAATGTAACCATGCAAAGTAACAAATCGAATGGACATGTTTA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183760544 420 + 184069350 GAAATTGA-------Tgga----------aagagaatttcaggcagagagagtggcacttgcaaaCAGGATCTGCTGTGAAGGGACGTATTTGTTCTCTCCTCT-------TGGATGG-TGTTCCATGTCCTTTGTCCTTAATTAAGATCCAGGCC-AGGCTTTCATTGGACCCCATGGCACTGGCATGGGAC----------GAAGCTCTCCAGGCCTGCCTTGCCCAAAACACCATTCATACAACCCTTTATTGTG----CATGCATGCAGCCTCACTGAAGCTTCTACT-----------GGAAGAAATAGAAA-AAATACCGCCTAACGGGAAGACAGGGTAAAACAAA--GTGCTCCTGCTAGAATACGTTA-------ACTTGCCAGTG--A-------TAATTAACCTTG---TTATTAAGAGTCACAGAAATTACTACACGAAAATAATGGAACCTTGCAAAGTGATGAATCAAATGGACATGTC--
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189152936 420 + 189454096 GAAATTGA-------Tgga----------aagagaatttcaggcagagagagtggcacttgcaaaCAGGATCTGCTGTGAAGGGACGGATTTGTTCTCTCCTCT-------TGGATGG-TGTTCCATGTCCTTTGTCCTTAATTAAGATCCAGGCC-AGGCTTTCATTGGACCCCATGGCACTGGCATGGGAC----------GAAGCTCTCCAGGCCTGCCTTGCCCAAAACACCATTCATACAACCCTTTATTGTG----CATGCATGCAGCCTCACTGAAGCTTCTACT-----------GGAAGAAATAGAAA-AAATACCGCCTAACGGGAAGACAGGGTAAAACAAA--GTGCTCCTGGTAGAATATGTTA-------ACTTGCCAGTG--A-------TAATTAACCTTG---TTATTAAGAGTCACAGAAATTACTACACGAAAATAATGGAACCTTGCAAAGTGATGAATCAAATGGACATGTC--
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178571873 430 + 178775436 GAAATTGA-------TGGAAAGGGGGGAGAAGAGAATTTCAGGCAGAGAGAGTGGCACTTGCAAATAGGATCTGCTGTGAAGGGACGGATTTGTTCTCTCCTCT-------TGGATGG-TGTTCCATGTCCTTTGTCCTTAATTAAGATCCAGGCC-AGGCTTTCATTGGACCCCATGGCATTGGCATGGGAC----------GAAGCTCTCCAGGCCTGCCTTGCCCAAAACACCATTCATACAACCCTTTATTGCG----CATGCATGCAGCCTCACTGAAGCTTCTact-----------ggaagaaatagaaa-aaataccgCCTAACGGGAAGACAGGATAAAACAAA--GTGCTCCTGGTAGAATACGTTA-------ACTTGCTAGTG--A-------TAATTAACCTTG---TTATTAAGAGTCACAGAAATTACTACACGAAAATAATGGAACCTTGCAAAGTGATGAATCAAATGGACATGTC--
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135512534 432 + 135778131 GAAATTga-------tggaaaggggagagaagagaatttcaggcagagagagtggcacttgcaaaTAGAATCTGCTGTGAAGGAACGGATTTGTTCTCTCCTCT-------TGGATGG-TGTTCCATGTCCTTTGTCCTTAATTAAGATCCAGGCC-AGGCTTTCATTGGACCCCATGGCACTGGCATGGGAC----------GAAGCTCTCCAGGCCTGCCTTGCCCAAAACACCATTCATACAACCCTTTATTGTG----CATGCATGCAGCCTCACTGATGCTTCTACT-----------GGAAGAAATAGAAA-AAATACCACCTAACGGGAAGACAGGATAAAACAAA--GTGCTCCTGGTAGGATACGTTA-------ACTTGCTAGTG--A-------TAATTAACCTTG---TTATTAAGAGTCACAGAAATTACTACACGAAAATAATGGAACCTTGCAAAGTGATGAATCAAATGGACATGTCTA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190611656 408 - 190850796 GAAATTGA-------GGGAAAGGAGGGAGAAGAGAACTTCAGGC--AGAGAGTGGCACTTGCAGATAGGACCCGCAGGGAAGGGGCAGATGTGTTCTCTCCCCT-------TGGACGG-CGCTTTCTGTCCGTTGTCC----CTAAGATGCAGG-------------------CCACGGCACGGTCA-GGGAG----------GGGGGTCTCCAGCCCTGCCCTGCCCACAACGCTACCAGCACCACCCTCTACTGTG----CAAGCATGCAGCCTCACTGAAACTTCTCCT-----------GGAAGAAATAGGGG-AA--AATGCATAACGGGGAAACAGG-TAACAGAAA--GTGCTCCTGGTC-AATACATTA-------ACTTGCTAGCGATA-------TAATTAACCTTGTTATTATTAGGAGCCACAGAAACTGCTACACAAAGATAACGAAGCCTTGCAAACTGACAAACCAAATGGACATGTTAA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18057069 474 -  59632846 AAAATggagtctaggtgaaagggggagaaaaaagaatcccaggccacggaagtggcctctgcaaatacacaaagctagcaaggG-CAAATCTGTTCTCTTCTCTATCAAGGGGGATGGACAATCCACAT---TTTTCC-------AGATTCAGTCCAAAGTTTTCAATGG-TCCTATGGCACAGGAGCAGAATCCTTACCAGGAGAGCCCTCCAGGTCTGCCCTACCCACAACACTACATACTGCTCCCCTAAATGTGTATATATGCATGCAACCCTACTAAAACTTACACCCTTCCTATTCAGAAACGGTTAGGAATAAAGGCTGCACAGCAGGGAAAGGGGAAAAAAAAAA--AAAACCTTCACACAATGCATTAACCATTCACTTGTTAGCA--AAGCTATGTAATTAGCATTG---TTGCTAAGAGCCACAGAAGTTGCTAGACAAGGATAATGTAACTTTTCAAAGTAACAAA--GAATGGATGTATTTT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87766392 2676 - 129401213 I
e panTro4.chr4             193072825 21994 + 193495092 I

a score=1221280.000000
s hg38.chr4_KI270925v1_alt    379396 459 +    555799 TAAAAATGAGGATTGAGGAAGA--TTTTTTCTTACTGAACTGCATAAAAGATGTTGCATTTGAAGCATCAGAAAGTGTTTCTCCACCAACAGCATCTCCAAAAAGTCAGAAATCTGACGAATACCATTCCCTTAAAGAAC-GAGACACTTTGCATGATTGCCTTTT-ACAGCCCTCACTGAGGCTGGAGACTTCCACAACTGAATCAAAAGAGATGGCTCAACTGTGCCAGGGAAAGGGAACTTTTGCCCTCTGATTCACTTAAAAGGCAGAATGACGGACAAGCCGACCTGCTCAGCCTGCAGGTGA-GG--GA-GGGAATCCGAGCCGCTGGCACAGAGAGGAAAACCACACTGTTAGGTG-TCCCGTTTACTTCATGTGCTCGCACCAGGGTGAGGACA-GCAGGCCTCACCCCAAA---A-CGCAGAAATGCTGGCATACTGTTCCCCTAAAAAGGAGCTGAAGAGGAC
s ponAbe2.chr4             198175172 459 + 198332218 TAAAAATGAGGATTGAGGATGA--TTTTTTCTTACTGAACTGCATAAAAGATGTTGCATTTGAAGCATCAGAAAGTGTTTCTCCACCAACAGCATCTCAAAAAAGCCAGAAATCTGACTAATACCATTCCCTTAAAGAAC-CAGACACTTTGCATGATTGCCTTTT-ACAGCCCTCACTGAGGCTGGAGACTTGCACAACTGAATCAAAAGAGATGGCTAAACTGCTCCAGGGAAAGGGAACTTTTGTCCTCGGATTCACTTAAAAGGCAGAATGATGGACAGGCCGACCTGCTCAGCCTGCAGGCGA-GG--GA-GGGAATGCGAGCCGCTGGTACAGAGAGGAAAACCACGCTGTTATGTG-TCCAGTTCACTTCATGTGCTCGCACCAGGGTGAGGACA-GCAGGCCTCACCCCAAA---A-CGGGGAAATGCTAGCATGCTGTTCCCCTAAAAAGGAGCTGAAGAGTAC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113850269 446 + 115148730 TAAAAATGAGGACTGAGGAAGA--TTTTTTCTTACTGAACTGCATAAAAGATGTTGCATTCGAAGCATCAGAAAGTGTTTCTCCACCAATAGCATCTCAAAAAAGCCAGAAATCTGACTAATACCATTCCCTTAAAGAAC-CAGACACTTCGCATAATTGCCTTTT-ACAGCCCTCACTGAGGCTGGAGACTTGCACAACTGAATCAAAAGAGATGGCTAAACTGCTCCAGGGAAAGGGAACTTTTGCCCTCTGATTCACTTAAAAGGCAGAACGATGGACAGGCTGACCTGCTCGGCCTGCAGGTGA-GG--GA-GGGAATCCGAGCCGCTGGCACAGAGAGGAAAACCACACTGTTATGTG-TCCAGTTCACTCCGTGTGCTTGCACCAGCGTGAGGACA-GCAGGCCTCACCCCAAA---A-CGCAGAAATGCTAG-------------TAAAAAGGAGCTGAAGAGTAC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183760964 457 + 184069350 TAAAAATGAGGATTGAGGAGGA--TTTTTTCTTCCTGAACTGCGTAAAAGATGTTGCATTTGAAGCATCAGAAAGTGCTTCTCCACCAACAGCATCTCAAAAAAGCCAGAAATCTGACTAATACCGTTCCCCTAAAGAAC-CAGACACTTTGCATGATTGCCTTTT-ACAGCCCTCACTGAGGCTGTAGACTTGCACAACTGAATCAAAAGAG--GGCTAAACTGCTACAGGGAGAGGGAACTTTTGCCCTCTGATTCACTTAAAAGGCAGAATGATGGACAGGCCGACCTGCTCAGCCTGCAGGTGA-GG--AA-GGGAATCCAAGCCACTGGCACAGAGAGGAAAACCACGCTGTTGTGTG-TCCAGTTCACTCCCTGTGCTTGCACCAGGGTGAGGACA-GCAGGCCTCAGCCCAAA---A-TGGGGAAATGCTAGCATGCTGTTCCCCTAAAAAGGAGCAGAAGTGCAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189153356 457 + 189454096 TAAAAATGAGGATTGAGGAGGA--TTTTTTCTTCCTGAACTGTGTAAAAGATGTTGCATTTGAAGCATCAGAAAGTGCTTCTCCACCAACAGCATCTCAAAAAAGCCAGAAATCTGACTAATACCGTTCCCCTAAAGAAC-CAGACACTTTGCATGATTGCCTTTT-ACAGCCCTCACTGAGGCTGTGGACTTGCACAACTGAATCAAAAGAG--GGCTAAACTGCTACAGGGAGAGGGAACTTTTGCCCTCTGATTCACTTAAGAGGCAGAATGATGGACAGGCCGACCTGCTCAGCCTGCAGGTGA-GG--AA-GGGAATCCAAGCCGCCGGCACAGAGAGGAAAACCACGCTGTTGCGTG-TCCAGTTCACTCCCTGTGCTTGCACCAGGGTGAGGACA-GCAGGCCTCAGCCCAAA---A-TGGGGAAATGCTAGCATGCTGTTCCCCTAAAAAGGAGCAGAAGTGTAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178572303 457 + 178775436 TAAAAATGAGGATTGAGGAGGA--TTTTTTCTTCCTGAACTGCGTAAAAGATGTTGCATTTGAAGCATCAGAAAGTGCTTCTCCACCAACAGCATCTCAAAAAAGCCAGAAATCTGACTAATACCGTTCCCCTAAAGAAC-CAGACACTTTGCATGATTGCCTTTT-ACAGCCCTCACTGAGGCTGTAGACTTGCACAACTGAATCAAAAGAG--GGCTAAACTGCTACAGGGAGAGGGAACTTTTGCCCTCTGATTCACTTAAAAGGCAGAATGATGGACAGGCCGACCTGCTCAGCCTGCAGGTGA-GG--AA-GGGAATCCAAGCCGCTGGCACAGAGAGGAAAACCATGCTGTTACGCA-TCCAGTTCACTCCCTGTGCTTGCACCAGGGTGAGGACA-GCAGGCCTCAGCCCAAA---A-TGGGGAAATGCTAGCATGCTGTTCCCCTAAAAAGGAGCAGAAATGTAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135512966 459 + 135778131 TAAAAATGAGGATTGAGGAGGA--TTTTTTCTTCCTGAACTGCATAAAAGATGTTGCATTTGAACCATCAGAAAGTGCTTCTCCACCAACAGCATCTCAAAAAAGCCAGAAATCTGACTAATACCATTCCCCTAAAGAAC-CAGACACTTTGCATGATTGCCTTTT-ACAGCCCTCACTGAGGCTGTAGACTTGCACAACTGAATCAAAAGAGACGGCTAAACTGCAACAGGGAGAGGGAACTTTTGCCCTCTGATTCACTTAAAAGGCAGAATGATGGACAGGCCGACCTGCTCAGCCTGCAGGTGA-GG--AA-GGGAATCCAAGCCGCTGGCACAGAGAGGAAAACCACGCTGTTGCGTG-TCCAGTTCACTCCCTGTGCTTGCACCAGGGTGAGGAGA-GCAGGCCTCAGCCCACA---A-TGGGGAAATGTTAGCATCCTGTTCCCCTAAAAAGGAGCTGAAGGGTAC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190612064 456 - 190850796 TAAAAATGAGGATTGAGGAAGG--TTTCTTCTTACTGAACTGTATAAAACATCTTGCCTTTGAAGCATCAGAAAGTGTTTCTCCACCAACGGCATCTCAAGAAAGCCAGAAATATGACTAGTACCATTCCCTCATTA----TAGGCATTTTGCACGATTGCTTTCC-ACAGCCCTCGCTAAGGCTGTTGACTTGCTCAACCGGATAAAAAGAGACAGCTAAACAGCTACGGTGAAAGGGAACTCTGGCCTTCTGAGTCACTTAACAGGCAGAATGACGGAGAGGCTGACCTGCCTAGCCCTCGGGTGAGGG--AA-GGGAATCCAAGCTGCTGGCACAGAAGGGAAAGCT-CGCTGTTACATG-TCCGGTTCACTCCACGTGCTTGCAACAGGATGAGGACA-GCAGGCCTCACCGCAAA---A-CGGGGAAACGTTAGCAAGCTATTCCCCTAAAAAGGAGCTGAAGAGGAC
i calJac3.chr3             C 0 I 362
s mm10.chr8                 87769068 437 - 129401213 taaggatgttgaacaAGGAGTT--GTTTTTCTATCTGAATTGCATAGACCGTGTTGCATCTGAAAGAAGGGAAGCTGTTTCTCCTGCAGCAACATTTCCAAAAAGTCAGAACTATGACTGACACCAT------GAAAGCA-AAGATGCTTCTCAGTGTT-CTGTCG-GCAGCCCCCTCCTG---TCTCTACTCATACAATGGAAGAAAAAG-GACAGCTAAGCTGCCATGGGG-GATGGAACTTTTGACCCACCATTCTTGTAACTGGCAGAATGAAGGAAAGGCTGATAGGCTTAGCCTGCGGGCAA-CT--AACAGGAATTCAAAGTGTTGG--CAAAGAGCAAAACTATGTGGCTATGTG-GCCCCTTGGCTCTGTGTGCTTCCA--AGGAGACAGACATGCAGacacaaatacacacaca-cacacacacacacacacacacacacacacacaAGGAA-----------
i mm10.chr8                I 2676 C 0
s canFam3.chr16             18057543 444 -  59632846 TAAAAATGAAAATTGTAGAAGAGTTTTTTTCTTACTGAATTGCATAAAATATGTTGTATTTGAAACAAAGAAAAATGTTTCTCCCCCAACAGAATTTT--AAAAGCCAGAAATATGACTAATGCCATTCCATCCAAGAACAGAGACACTTTGCATTATTGCTTCTTAACAGTCCTCTGTAAGGCT--ACATTCTCAAACCTGAATAAAAAGAGATTGCAAAACTGCTCCAGTGAAATGGAACTTTTGACCTGTGTTTCGTTGAACTGGCAGAAAGTTGCAAAAGCTGACCTGCTCAGCCTACAGATGA-ATCCAA-GGGATT------------CATAAAAAGAAAA----CTGTGTTATATGCCCCCATTCATTCTGTGTACATGCAACAGGATGAAGACA-ACAGAATTCACCCCCAA---ATTACAGAAATACCATAATGCTATTCTCCCAAATAGAAG---AAGGCCAC
i canFam3.chr16            C 0 C 0
e panTro4.chr4             193072825 21994 + 193495092 I

a score=112677.000000
s hg38.chr4_KI270925v1_alt    379855 41 +    555799 ATGATACAAACAGCACCTGCCACGTAACCCTCAAAAACATG
s ponAbe2.chr4             198175631 41 + 198332218 ATGATACAAACAGTACCTGCCGTGTAACCCTCAAAAACATG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113850715 41 + 115148730 ATGATACAAACAGCACCTGCCGTGTAACCCTCAAGAACACG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183761421 41 + 184069350 ATGATACAAACAGCACCTGCCGTGTCACCCTCAAAAACTCG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189153813 41 + 189454096 ATGATACAAACAGCACCTGCCGTGTCACCCTCAAAAACTCG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178572760 41 + 178775436 ATGATACAAACAGCACCTGCCGTGTCACCCTCAAAAACTCG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135513425 41 + 135778131 ATGATACAAACAGCACCTGCCGTGTCACCCTCAAAAACTCG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190612882 41 - 190850796 ATGATACAAACAGCACCTGCCAGGTAACTCTCAAACACATG
i calJac3.chr3             I 362 C 0
s mm10.chr8                 87769505 37 - 129401213 ATGCT----ACAGTTCCTGCCACAAGACTCTCAAAAATCTG
i mm10.chr8                C 0 I 194
s canFam3.chr16             18057987 40 -  59632846 ATGACACATATGATACCTGTCACATGACTC-AAAAAACACA
i canFam3.chr16            C 0 C 0
e panTro4.chr4             193072825 21994 + 193495092 I

a score=730462.000000
s hg38.chr4_KI270925v1_alt    379896 330 +    555799 AGGAAAATTACATGACACTTGTC-AGTCCTTTTTGTTGATTCAAATATCTGTGGAT-TGATTACTAAA-TTTGTTGACTAATCCCTCAGGTAGTAAACAAGTCATG-----AAAACCTGAAGGCTATTATACAGCCTTTCCCACATTTTC-AAATGTGTCCTGACCTCGACCAGGAATATTCTAGGGTCCGAAAGGGTGATTTATGTGATTCTATAAAGTGACATAATGAGACTG----GCTATTAGCATATGTTCAAATACGTTCAAAGCCAGAACCT-GGACATGCGATGTAGTGTTTAGGGCCTAACGAAGTAGACCCGATTGATCTTTCA---CACTTTCGAG
s ponAbe2.chr4             198175672 330 + 198332218 AGGAAAATTACATGACACTTGTC-AGTCCTTTTTGTGGATTCAAATATCTGTGGAT-TTATTACTAAA-TTTGTTGACTAATCCCTCAGGTAGTAAAGAAGTCGTG-----AAAACCTGAAGCCTATTATACAGCCTTTCCCACATTTTC-AAATGTGTCCTGACCTCGACCAGGAATACTCTAGGGTCCGAAATGGTGATTTATGTGATCTTATAAAGTGACATAATGAGACTG----GCTATTAGCATATGTTCGAATATGTTCAAAGCCAGAACCT-GGACATGCGATGTACTGTTTAGGGCCTAACAAAGTAGACCTGATTGATCTTTCG---CACTTTCAAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113850756 330 + 115148730 AGGAAAATTACATGACACTTTTC-AGTCCTTTTCGTTGATTCAAATATCTGTGGAT-TTATTACTAAA-TGTGTTGACTAATCCCTCAGGTAGTAAAGAAGTCATG-----AAAACCTGAAGGCTGTTGTACAGCGTTTCCCACATTTTC-AGATGTGTCCTGACCTTGACCAGGAACATTCTAGGGTCCAAAATGGTGATTTATGTGATCCTATAAAGTGACATAATGAGACTG----GCTATTAGCATATGTTCAAATATGTTCAAAACCAGAACCT-GGACATGCGATATAGTGTTTAGGGCCTGACAAAGTAGACCCGATTGATCTTTCA---CACTTGTGAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183761462 310 + 184069350 AGGAAAATTACATGACATTTTTC-AGTCCTTTTTGTTGATTCAAATATCTGTGGCT-TTATTACTAAACTTTGTTGACTAGTCCCTCAGG-AGTAAAGAAGTCATG-----AAAACCTGAAGGTTATTATACAGCTTTTCCCACATTTCC-AAATGTGTCCT------GTCCAGGAATATTCTAGGGTCCGAAATGGTGACTTATGTGATCCTATAAAGTGAC---ATGAGACTG----GCTATTAG-----------ACATGTTCAAAGCCATAATTT-AGACATGCGATGTAGTGTTTAGGGCCTAACAAAGTAGACCTGATTGATCTTTCA---CACTTTCGAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189153854 310 + 189454096 AGGAAAATTACATGACACTTTTC-AGTCCTTTTTGTTGATTCAAATATCTGTGGCT-TTATTACTAAACTTTGTTGACTAGTCCCTCAGG-AGTAAAGAAGTCATG-----AAAACCTGAAGGTTATTATACAGCTTTTCCCACATTTCC-AAATGTGTCCT------GTCCAGGAATATTCTAGGGTCCGAAATGGTGACTTATGTGATCCTATAAAGTGAC---ATGAGACTG----GCTATTAG-----------ACATGTTCAAAGCCATAATTT-AGACATGCGATGTAGTGTTTAGGGCCTAACAAAGTAGACCTGATTGATCTTTCA---CACTTTCGAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178572801 310 + 178775436 AGGAAAATTACATGACACTTTTC-AGTCCTTTTTGTTGATTTAAATATCTGTGGCT-TTATTACTAAACTTTGTTGACTAGTCCCTCAGG-AGTAAAGAAGTCATG-----AAAACCTGAAGGTTATTATACAGCTTTTCCCACATTTCC-AAATGTGTGCT------GTCCAGGAATATTCTAGGGTCCGAAATGGTGACTTATGTGATCCTATAAAGTGAC---ATGAGACTG----GCTATTAG-----------ACATGTTCAAAGCCATAATTT-AGACATGCGATGTAGTGTTTAGGGCCTAACAAAGTAGACCTGATTGATCTTTCA---CACTTTCGAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135513466 311 + 135778131 AGGAAAATTACATGACACTTTTCAAGTCATTTTTGTTGATTCAAATATCTGTGGCT-TTATTACTAAACTTTGTTGACTAGTCCCTCAGG-AGTAAGGAAGTCATG-----AAAACCTGAAGGTTATTACACAGCTTTTCCCACATTTCC-AAATGTGTCCT------GTCCAGGAATATTCTAGGGTCTGAAATGGTGACTTCTGTGATCCTATAAAGTGAC---ATGAGACTG----GCTATTAG-----------ACATGTTCAAAGCCACAATTT-AGACATGCGATGTAGTGTTTAGGGCCTAACAAAGTAGACCTGATTGATCTTTCA---CACTTTCGAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190612923 305 - 190850796 AGGAAAATCACATGACACTTTTC-AGTTCTTTTTGTTTATTCAGGTATCTACGGAT-----------------TTGACTAATCTGTCAGGCGGTAAAACATTCATG-----AAAAACTGAAGGCTACTATACAGCCTTTCTCATGTTTCC-AAAAGTATCCTAACCTGGACCAGAAATACTTTAGGATCCTAAATGGTGATTTGTGTGATCCTATAAAGTGGCATAATGAGACTG----GCTATTAGC----------ATATGTTCAAAGTCAGAACTT-GGACATGTGATGCCCTGTTTAGGGCCTAACAAAGTAGACCCAGTGGATCTTTCA---CGCTTTGGAG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18058027 330 -  59632846 AAGAGAATTGTATCATATTTTCA-------TTTTTTTAATTCAAGTATCTGTGGATGCTATTACTAAACTCGGTTGACTAACCCCTTGAGTAGTAAGGAATTCATGGGGGAAAAAAAACAACTTAATTTTACAGCCTTTTTTACATTTTCAAAATGTATCTTAGTCTTGGGCAGAAATACTTTTGGTTTCTAAATGGTGATTTATGTGATCTTATAAAGCAGCATAATAGGATTAGCATGCAATTAGC----------AAGAGTTCCAAACCACAGCTGAGGACCCACAGTGCACTATTTAGGACCCAAAAAGGCAGAATTTGCTTCTCTTGCATATCACTTTCCAG
i canFam3.chr16            C 0 I 2825
e mm10.chr8                 87769542 194 - 129401213 I
e panTro4.chr4             193072825 21994 + 193495092 I

a score=567053.000000
s hg38.chr4_KI270925v1_alt    380226 283 +    555799 AAGCAGGCAGGCGGCTCAGGGCAGGTAAGCAGCTCCGCTGCATGAAGTCATCTGGGGCTCTGATACCCTTGACATTGCACTGGCTTTCCTCGGGATGTTCTAATCATCCATGCCGTCGATACTGACTCCCCACCACACCCATGCTTAATCCTATGAGAAGAGAAACCGAGCCCCAAATCCCTCCTTTTAAGGGCCTTTCACTGCTGGGGGACTTAGATACATGGTCCAGCTTTTTCACTGGGGAAGCTGGGA-TATGCAGTC-TCCAGCAGGCAGCCATATGCCC
s ponAbe2.chr4             198176002 283 + 198332218 AAGAAGGCAGGCGGCTCAGGGCAGGTAAGTGGCTCTGCTGCATGAAGTCATCTAGGGCTCTGATACCCTTGACATTGTACTGACTTTCCTCGGGATGTTCTAATCATCCATGCCGTCAATACTGACTCCCCACCACACCCATGCTTAATCCTATGAGAAGAGAAACGGAGCCCCAAATTCCCCCTTTTAAGGACCTTTCACTGTTGGGggacttagatacatggcccagctttttcgtgggggaggctgggg-tatgcagtc-tccagcaggcagccatatgccc
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113851086 281 + 115148730 AAGAAGGCAGGTGGCTCAGGGCAGGTAAGCGGCTCCGCTCCACGACGTCATCTA-GGCTCTGATGCCCTTGACGTTGTACTGACTTTCCTC-GGATGTTCTAATCATCTATGCCGTCGATACTGACTCCCCACCACCCCCATGCTTAATCCTATGAGAAGAGAAACCGAGCCCCAAATTCCGCCTTTTAAGGGCCTTTCACTGCTAGGGGACTTAGATACAGGGTCCAGCTTTTTCGCGGGAGAGGCTGGGA-TATGCGGTC-TCCAGCAGGCAGCCATATGTCC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183761772 278 + 184069350 A---AGGCAGGCGGCTCAGGGCAGGTAAGTGGCTCTGCTCCACGAAGTCATCTAGGGCTCTGATGCCCTTGACGTTGTACTGACTTTCCTCAGGATGTTCCAATCATCCATGCCGTCACTACTGACTCCCCACCACACCCATGCTTAATCCTACAAGAAGAGAAACTGAGCCCCAAATTCCTCCTTTTAAGGGCCTTTCACTGCTGGGGAA-TTAGATACACGGTCCAGCTTTTCC-CAGGGGAGGCTGGGA-TATGCAGTC-TCCAGCAGGCAGCCATATGCCC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189154164 278 + 189454096 A---AGGCAGGCGGCTCAGGGCAGGTAAGTGGCTCTGCTCCACGAAGTCATCTAGGGCTCTGATGCCCTTGACGTTGTACTGACTTTCCTCAGGATGTTCCAATCATCCATGCCGTCAATACTGACTCCCCACCACACCCATGCTTAATCCTACAAGAAGAGAAACTGAGCCCCAAATTCCTCCTTTTAAGGGCCTTTCACTGCTGGGGAA-TTAGATACACGGTCCAGCTTTTCC-CAGGGGAGGCTGGGA-TATGCAGTC-TCCAGCAGGCAGCCATATGCCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178573111 278 + 178775436 A---AGGCAGGCGGCTCAGGGCAGGTAAGTGGCTCTGCTCCACGAAGTCATCTAGGGCTCTGATGCCCTTGACGTTGTACTGACTTTCCTCAGGATGTTCCAATCATCCATGCCGTCAATACTGACTCCCCACCACACCCATGCTTAGTCCTACAAGAAGAGAAACTGAGCCCCAAATTCCTCCTTTTAAGGGCCTTTCACTGCTGGGGAA-TTAGATACACGGTCCAGCTTTTCC-CAGGGGAGGCTGGGA-TATGCAGTC-TCCAGCAGGCAGCCATATGCCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135513777 267 + 135778131 A---AGGCAGGCGGCTCAGGGCAGGTAAGTGGCTCTGCTCCACGAAGTCATCTAGGGCTCTGATGCCCT-----------TGACTTTCCTCAGGATGTTCCAATCATCCATGCCGTCAATACTGACTCCCCACCACACCCATGCTTAATCCTACAAGAAGAGAAACTGAGCCCCAAATTCCTCCTTTTAAGGGCCTTTCACTGCTGGGGAA-ttagatacttggtccagctattcc-caggggaggctggga-tatgcagtc-cccagcaggcagccatatgccc
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190613228 253 - 190850796 GAGAACAC-GGTGGCTCATGGCAGGTAAGT-------------------------GGCTCTGATG-CTTTGATGTTGTGCTGACCTCACTCAGGATGCTACAGGCATCCCTGCTGTTAGTACTGACTCCCCACCACACCCATGCTTAATCCTGTGGCAAGAGAAACTGAGCCCAAA----CTCCTTTTAAGGGCCTGTCACTGCTGGGGGACTTCAGTACACGGTCCAGCTTTTTTTGCAGGGAGGCTGGGACTATGCAGTCTTCCAGCA-GCAGCCATATTCCC
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18058357 2825 -  59632846 I
e panTro4.chr4             193072825 21994 + 193495092 I

a score=546389.000000
s hg38.chr4_KI270925v1_alt    380509 241 +    555799 AACCAAAGCTCAGGAGAATGGG---GCTTCTGAG-----TTTAAGACAGACAGAGGGAAGGGGCAGCAGAGGACAGTTAATGTTGCCATGCCTGCCTTAGCAAAGCAGTTGTGTGTTTCTCCTTAGCACAGAAGGC--------TATGTGCTTTGAAATGATTGGATTTTCAAAGTCATTTGACCA---------------TTTACTAACTCCTCTCCATCACTTCCTGTGCATTCTATAatttctcaccctatcccattttcccaaactct
s ponAbe2.chr4             198176285 233 + 198332218 aaccaaagctcaggagaatggg---gcttctgag-----tttaaggca--------gaaggggCACCAGAGGACAGTTAATGTTGCCATGCCTGCCTTAGCAAAGCAGTTGTGAGTTTCTCCTTAGCACAGAACGC--------CGTGCACTTTGAAATGATTGGATTTTCAAAATCATTTGACCA---------------TTTTCTAACTCCTATCCATCACTTCCTGTGCATTCTATAATGTCTCACCCTATCCCATTTTCCCAAACCCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113851367 239 + 115148730 AACCGAAGCTCAGGAGAATGGG---GCTTCTGAA-----TTTAAGGCAGACAGGG-GAAGGGGCACCAGA-GACAGTTAATGCTGCCATGCCTGCCTTAGCAAAGCAGTTGTGTGTTTCTCCTTAGCACAGAAGGC--------TGTGCGCTTTGAAATGATTGGATTTTCAAAATCATTTGACCA---------------TTTTCTAAATCCTCTCCATCACTTCCTGTGCATTCTATAATTTCTCACCCTATCCCGTTTTCCCAAGCCCT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183762050 236 + 184069350 AACCAAAGCTCAGGAGAAT-GG---GCTTCTGGG-----TTTAAGGCAGACGGGG-GAAGGGGCACCAGAGGACAGCTGATGTTGCCATGCCTGCCTTAGCAAAGCAGTTGTGTGTTTCT-CTTAGCACAGAAGAC----------TGTGCTCCGAAATGCTTGGATTTTCAAAATCATTTGACCA---------------ATTTCTAACTCCTCTCCATCACTTCCTGTGCATTCTATAatttcccaccctctcccattttcccaaactct
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189154442 236 + 189454096 AACCAAAGCTCAGGAGAAT-GG---GCTTCTGGG-----TTTAAGGCAGACGGGG-GAAGGGGCACCAGAGGACAGCTGATGTTGCCATGCCTGCCTTAGCAAAGCAGTTGTGTGTTTCT-CTTAGCACAGAAGAC----------TGTGCTCCGAAATGCTTGGATTTTCAAAATCATTTGACCA---------------ATTTCTAACTCCTCTCCATCACTTCCTGTGCATTCTATAatttcccaccctctcccattttcccaaactct
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178573389 236 + 178775436 AGCCAAAGCTCAGGAGAAT-GG---GCTTCTGGG-----TTTAAGGCAGAAGGGG-GAAGGGGCACCAGAGGACAGCTGATGTTGCCATGCCTGCCTTAGCAAAGCAGTTGTGTGTTTCT-CTTAGCACAGAAGAC----------TGCGCTCCAAAATGATTGGATTTTCAAAATCATTTGACCA---------------ATTTCTAACTCCTCTCCATCACTTCCTGTGCATTCTATAATTTCCCACCCTCTCCCATTTTCCCAAACTCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135514044 236 + 135778131 aaccaaagctcaggagact-gg---gcttctggg-----tttaaggcagacgggg-gaaggggcaccagaggacaGTGGATGTTGCCATGCTTGCCTTAGCAAAGCAGTTGTGTGTTTCT-CTTAGCACAGAAGAC----------TGCGCTCTGAAATGACTGGATTTTCAAAATCATTTGACCA---------------ATTTCTAACTCCTCTCCATCACTTCCTGTGCATTCTATAattttccaccctctcccattttcccaaactct
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190613481 245 - 190850796 AACCCAAGCTCAGGAGGATGGG---GCTTCTGAG-----CTTAAGGCAGATAGG--GAAGGGGCACCAGCGGACAGCTGGCATTGCCCTGTC--ACTTTGCAAAGCAGTTGTGTGTTTCTCCTCAGCACAGGAGGCTGTGCAGCTGTGCGTTTTGAAATGACTGGATTTTCAAAATCATTTGGCCA---------------TTTGTTAACTCCCCTCCATTACTTCCTGTGCATTCTATAatttcccaccctatcccattttcccaaactct
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18061182 247 -  59632846 aacaaaaactaatgaggaa-ggtatacttctaaattcattttaagaaagtcagG--AGATGGGTACATGGAGA-GGTTAGTGTGGCCACTCTGAATTTAGCAAAGCATTTTTATGTTTCT-----------TAGTT--------TGTATACTTTGAAA--ATTAGATTTTCAAAGCTATTTGACAGGGTTGTTTTTGTTTTTGTTTTAACTCATGTCCCAACTTTTCTATACTTTCTATAACTTCCCACCCAAACCCATCCTCCCAAATTCT
i canFam3.chr16            I 2825 I 38
e mm10.chr8                 87769542 194 - 129401213 I
e panTro4.chr4             193072825 21994 + 193495092 I

a score=8148.000000
s hg38.chr4_KI270925v1_alt    380750 3 +    555799 tcc
s ponAbe2.chr4             198176518 3 + 198332218 TCC
i ponAbe2.chr4             C 0 I 1027
s nomLeu3.chr7b            113851606 3 + 115148730 TCC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183762286 3 + 184069350 tcc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189154678 3 + 189454096 tcc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178573625 3 + 178775436 TCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135514280 3 + 135778131 tcc
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190613726 3 - 190850796 tcc
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061429 38 -  59632846 I
e panTro4.chr4             193072825 21994 + 193495092 I

a score=156310.000000
s hg38.chr4_KI270925v1_alt    380753 99 +    555799 tctgcatcctgctcgtatatatcagctccctaaatcctctcttgcatactgtagttcctctttaaaaattctcttcacccctagctatcagcgagcatg
s nomLeu3.chr7b            113851609 99 + 115148730 TCTGCATCCTGCTCATATATATCAGCTCCCTAAATCCTTTCTTGCACACTCCAGTTCCTCTCTAAAACTTCCCTTCACCCCTAGCTATCAGCGAGCATG
i nomLeu3.chr7b            C 0 M 2081
s rheMac3.chr5             183762289 99 + 184069350 tctgcaccatgatcatttatatcagctccctaaatcctctcttacatactctagttcctctttaaaagttctcgtcacccctagctatcagcgagcatg
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189154681 99 + 189454096 tctgcaccatgatcatttatatcagctccctaaatcctctcttacatactctagttcctctttaaaagttctcgtcacccctagctatcagcgagcatg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178573628 99 + 178775436 TCTGCACCATGATCATTTATATCAGCTCCCTAAATCCTCTCTTACATACTCTAGTTCCTCTTTAAAAGTTCTCGTCACCCCTAGCTATCAGCGAGCATG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135514283 99 + 135778131 tctgcaccatgatcatgtatatcagctccctaaatcctctcttacatactctagttcctctttaaaaattctcgtcacccctggctatcagcgagcatg
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190613729 96 - 190850796 tctgcatcctgatcatatatgtcagctccctaaatcctctt---catcccctgcattctccttaaaaatcctcttcacccccagccatcagcaagctct
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061429 38 -  59632846 I
e ponAbe2.chr4             198176521 1027 + 198332218 I
e panTro4.chr4             193072825 21994 + 193495092 I

a score=156075.000000
s hg38.chr4_KI270925v1_alt    380852 144 +    555799 actttcccagcctccttctccacgggaatg-tttttcctcccatattgcacataagccatggcctgcaggtggggcaagcacgcccttactcccactgctgtattcacacggt-atctcctcctttctcctccaaaagcctccagc
s rheMac3.chr5             183762388 143 + 184069350 actttcccagcctccttctccgcaggaatg-tttttcgtcccatattctacataagcgacggcctgcaggtgcggtaagcgtgcccttcctcccactgctgtgttcacactat-atctccttctttctcctcccaaagcc-ccagc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189154780 143 + 189454096 actttcccagcctccttctccgcaggaatg-tttttcgtcccatattctacataagcgacggcctgcaggtgcggtaagcgtgcccttcctcccactgctgtgttcacactat-atctccttctttctcctcccaaagcc-ccagc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178573727 140 + 178775436 ACTTTCCCAGCCTCCTT---CGCAGGAATG-TTTTTCGTCCCATGTTCTACATAAGCGCCGGCCTGCAGGTGCGGTAAGCGTGCCCTTCCTCCCACTGCTGTGTTCACACTAt-atctccttctttctcctcccaaaGCC-CCGGC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135514382 140 + 135778131 accttcccagcctcctc---cgcaggaatg-tttttcctcccatattctgcataagcaacggcctgcaggtgcggtaagcgtgcccttcctcccgctgctgtgttcacactat-atctccttctttctcctcccaaaacc-ccagc
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190613825 145 - 190850796 acattcccagcctcctgctccacaggaatgctttttcctcacatgttctgtataagctacggcctgcacatggggtaagaactcccctgctcccactgctgtgttcaaactgtaacctccttctttctcctccacaagcc-ccagc
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061429  38 -  59632846 I
e nomLeu3.chr7b            113851708 2081 + 115148730 M
e ponAbe2.chr4             198176521 1027 + 198332218 I
e panTro4.chr4             193072825 21994 + 193495092 I

a score=39946.000000
s hg38.chr4_KI270925v1_alt    380996 25 +    555799 tcctttggagcacacgccatctgac
s rheMac3.chr5             183762531 25 + 184069350 tcctttggggcatgcgccatctgac
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189154923 25 + 189454096 tcctttggggcatgcgccatctgac
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178573867 25 + 178775436 TCCTTTGGGGCATGTGCCATCGGAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135514522 25 + 135778131 tcctttggggcatgcgccatcggac
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190613970 25 - 190850796 tcctttgaagcgtgtcccatctgac
i calJac3.chr3             C 0 I 1080
s canFam3.chr16             18061467 25 -  59632846 TCctttgaggtatgtgccatctgac
i canFam3.chr16            I 38 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e nomLeu3.chr7b            113851708 2081 + 115148730 M
e ponAbe2.chr4             198176521 1027 + 198332218 I
e panTro4.chr4             193072825 21994 + 193495092 I

a score=362264.000000
s hg38.chr4_KI270925v1_alt    381021 248 +    555799 tagaccacctgcgtttccctg---ccatcttcagaccccccacgttctttccttcatccaccacggacttcagcggctggctccatcttcatctctac-ctacccttgttaccattttcagtgacttcagcttgcgcgtagataatccactgagcagtgagctctcagatccttagctttctctcccacgacactctttcctcca--ccatcccatgagacccagccccac-gaccacaccttagcccttgccat
s rheMac3.chr5             183762556 248 + 184069350 tacaccacctgcgtttccctc---tcatcttcagaccccctgtgttctttccttcatccaccgcagacttcagcatctggttccgtcttcatctctcc-ctgctcttgttaccattttcagtgacttcagcttgcacgtagataatccactgagcagtgagctctcaaatctttagctttctctcccgcaatactgtttcctcca--ccatcccacgaggcccagccccac-gaccacgccttagcccttgccat
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189154948 248 + 189454096 tacaccacctgcatttccctc---tcatcttcagaccccctgtgttctttccttcatccaccgcagacttcagcatctggttccgtcttcatctctcc-ctgctcttgttaccattttcagtgacttcagcttgcacgtagataatccactgagcagtgagctctcaaatctttagctttctctcccgcaatactgtttcctcca--ccatcccacgaggcccagccccac-gaccacgccttagcccttgccat
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178573892 248 + 178775436 TACACCACCTGCGTTTCCCTG---TCATCTTCAGACCCCCTGTGTTCTTTCCTTCATCCACCGCAGACTTCAGCATCTGGTTCCGTCTTCATCTCTCC-CTGCTCTTGTTACCATTTTCAGTGACTTCAGCTTGCACGTAGATGATCCACTGAGCAGTGAGCTCTCAAATCTTTAGCTTTCTCTCCCGCAATACTGTTTCCTCCA--CCATCCCACGAGGCCCAGCCCCAC-GACCACGCCTTAGCCCTTGCCAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135514547 247 + 135778131 tacaccacctgcgtttccctc---tcatcttcagaccccc-gtgttctttccttcatccaccgcagacttcagcatctggttccgtcttcatctctcc-ctgctcttgttaccattttcagtgacttcagcttgcacgtagataatccactgagcagtgagctctcaaacctttagctttctctcccgcaatgctgtttcctcca--ccatcccacgaggcccagccccac-gaccacgccttagcccttgccat
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190615075 247 - 190850796 tacaccacctgcatctccctg---tcatcgtcagatctct-gctttc-ttccttcatccaccaaggacttcagcatctgcttctgtctttttctctac-ctacttttgttactgttttcagtgacttcagcttgcacgtagataatccactgagcagtgagctctcaaattcttagctttctctcctgcaacactctttcctcca--ccatcccatgaggtccagccccacaaaccatgccttagctcttgccat
i calJac3.chr3             I 1080 C 0
s canFam3.chr16             18061492 244 -  59632846 tataccacttgctactccctgtgatcatcttcagacctcctgtgttctttcctgtatccaccaagggatttagcacctggttctgtccttcccattacactactcgtgttataattttctatgacttaaggttctagatgaatattgcaccaagtagtgaattcccaaatccttagcctcctcccttacaa---------ctcaaggtcacaccacaagg-ccactcccat-gatcatgccttagactttatcat
i canFam3.chr16            C 0 I 1474
e mm10.chr8                 87769542 194 - 129401213 I
e nomLeu3.chr7b            113851708 2081 + 115148730 M
e ponAbe2.chr4             198176521 1027 + 198332218 I
e panTro4.chr4             193072825 21994 + 193495092 I

a score=778128.000000
s hg38.chr4_KI270925v1_alt    381269 691 +    555799  
s rheMac3.chr5             183762804 686 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189155196 686 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178574140 686 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135514794 690 + 135778131  
i chlSab2.chr7             C 0 I 18
s calJac3.chr3             190615322 687 - 190850796  
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e nomLeu3.chr7b            113851708 2081 + 115148730 M
e ponAbe2.chr4             198176521 1027 + 198332218 I
e panTro4.chr4             193072825 21994 + 193495092 I

a score=296.000000
s hg38.chr4_KI270925v1_alt    381960 9 +    555799 CAGTTaaaa
s calJac3.chr3             190616009 9 - 190850796 CATTCAAAC
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e chlSab2.chr7             135515484 18 + 135778131 I
e papAnu2.chr5             178574826 0 + 178775436 C
e macFas5.chr5             189155882 0 + 189454096 C
e rheMac3.chr5             183763490 0 + 184069350 C
e nomLeu3.chr7b            113851708 2081 + 115148730 M
e ponAbe2.chr4             198176521 1027 + 198332218 I
e panTro4.chr4             193072825 21994 + 193495092 I

a score=8032.000000
s hg38.chr4_KI270925v1_alt    381969 21 +    555799 aaaaaaaaaaaaaaaaaaaac
s ponAbe2.chr4             198177548 21 + 198332218 aaaaaagaaaaaaaaaaaaaa
i ponAbe2.chr4             I 1027 C 0
s rheMac3.chr5             183763490 19 + 184069350 --AAAAAATCAAACAAACAAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189155882 19 + 189454096 --AAAAAATCAAACAAACAAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178574826 19 + 178775436 --aaaaaatcaaacaaacaac
i papAnu2.chr5             C 0 I 3
s calJac3.chr3             190616018  7 - 190850796 ------------AAAAACA--
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e chlSab2.chr7             135515484 18 + 135778131 I
e nomLeu3.chr7b            113851708 2081 + 115148730 M
e panTro4.chr4             193072825 21994 + 193495092 I

a score=21008.000000
s hg38.chr4_KI270925v1_alt    381990 13 +    555799 aaCTCCCGCAGAC
s ponAbe2.chr4             198177569 13 + 198332218 aaCTCCCGCAGAC
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183763509 13 + 184069350 AACTCCtgcggac
i rheMac3.chr5             C 0 I 18
s macFas5.chr5             189155901 13 + 189454096 AACTCCtgcggac
i macFas5.chr5             C 0 I 12
s papAnu2.chr5             178574848 13 + 178775436 aactccTGCAGAC
i papAnu2.chr5             I 3 C 0
s chlSab2.chr7             135515502 13 + 135778131 AACTCCtgcagac
i chlSab2.chr7             I 18 I 18
s calJac3.chr3             190616025 11 - 190850796 --CACCtgcagac
i calJac3.chr3             C 0 I 18
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e nomLeu3.chr7b            113851708 2081 + 115148730 M
e panTro4.chr4             193072825 21994 + 193495092 I

a score=-3733.000000
s hg38.chr4_KI270925v1_alt    382003 11 +    555799 ATTTCTTCAGA------------
s ponAbe2.chr4             198177582  6 + 198332218 -----TGGGGA------------
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189155926  6 + 189454096 -----------------gtctcc
i macFas5.chr5             I 12 C 0
s papAnu2.chr5             178574861 18 + 178775436 -----TAGGGAGGCACAGTCTTC
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616036 18 - 190850796 I
e chlSab2.chr7             135515515 18 + 135778131 I
e rheMac3.chr5             183763522 18 + 184069350 I
e nomLeu3.chr7b            113851708 2081 + 115148730 M
e panTro4.chr4             193072825 21994 + 193495092 I

a score=650549.000000
s hg38.chr4_KI270925v1_alt    382014 399 +    555799 AGCACaaatgaaagtgtgtgcaccgaagaacaaaggaagggtttatggctcaaataggaaaagttttctcccaggttctctgtcacgtctgtttatgcaaatgtaggattcacgtgtgttcagttcttattggttgagatagccaagccttgactgggtgGCTTCCC-ATCCCAACATTAAAAGTGTCTTTGTCAGGTGTTTTCTTTTAAAATGGCCAATGGGGTGGAGATGAGGAGTCTAGCCACTGTTTTTCTTGGCTCTGGTCACAGAAAGC--------------ACATGAAGTACGATGTTTGTGAAGAGATGGTTCTCCTCTCACTGCCCCTTATGGCCACTTGAATCTGTTATCTAAATTTGGGTGTCTCCATTAGTCACCGAGAGCCGATTTCCTCCGGAGAGCTT
s ponAbe2.chr4             198177588 399 + 198332218 AGCACaaatgaaagtgtgtgcaccgaagaacaaaggaagggtttatggctcaaataggaaaagttttctcccaggttctctgtcatgtctgtttatgcaaatgtaggattcacttgtgttcagttcttattggttgagatagccaagccctgactggatgGCTTCCC-ATCCCAACATTAGAAGCGTCTTTGTCAGGTGTTTTCTTTTACAATGACCAATGGGGTGGAGGTGAGGAGTCTAGCCACTGTTTTTCTTGGCTCTGGTCACAGAAAGC--------------GCATGAAGTAGGATGTTTGTgaagagatggctctcctctcaccgccccccatggccccttgaatctgttacctaaatttgggtgtctccattagtcacagggagcccatttcctctgGAGAGCTT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183763540 411 + 184069350 agcacaaaggaaagcgcgtgcaccaaagaacaaaggaagggtttacggctcccgtaggaaaaggtttcttccaggttctctgtcaagtctgtttatgcaaatgtaggactcaagtgtgttcagttcttattggtcgagatagtcaagccctaattgggtgGCTTCCCAACCCCAACAATAGAAGTGTCTTTGTCAGGCGTTTTCTTGTAAAATGGCCAACGGAGTGGATGTGAGGAGTCTAGCCACAGTTTTTCTTGGCTCTGGTCACAGAAAGTGTTCTGGGTCAAGGGCACGAAGCAGGATGTTTGTGAAGAGATGGTTCTCCTCTCA---CCCCACAAGGCCGCTTGAATCTGTTATCTAAATTTGGGTGTCTCCATGAGTCACCAGGAGCCCATTTCCTCTGGAGAGCTT
i rheMac3.chr5             I 18 C 0
s macFas5.chr5             189155932 412 + 189454096 agcacaaaggaaagcgcgtgcaccaaagaacaaaggaagggtttacggctcccgtaggaaaaggtttcttccaggttctctgtcaagtctgtttatgcaaatgtaggactcaagtgtgttcagttcttattggtcgagatagtcaagccctaattgggtgGCTTCCCAACCCCAACAATAGAAGTGTCTTTGTCAGGCGTTTTCTTGTAAAATGGCCAACGGAGTGGATGTGAGGAGTCTAGCCACAGTTTTTCTTGGCTCTGGTCACAGAAAGTGTTCTGGGTCAAGGGCACGAAGCAGGATGTTTGTGAAGAGATGGTTCTCCTCTCAC--CCCCACAAGGCCGCTTGAATCTGTTATCTAAATTTGGGTGTCTCCATGAGTCACCAGGAGCCCATTTCCTCTGGAGAGCTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178574879 412 + 178775436 AGCACAAAGGAAAGCATGTGCACCAAAGAACAAAGGAAGGGTTTACGGCTCCCATAGGAAAAGGTTTCTTCCAGGTTCTCTGTCAAGTCTGTTTATGCAAAGGTAGGATTCAAGTGTGTTCAGTTCTTATTGGTCGAGATAGTCAAGCCCTAATTGGGTGGCTTCCCAACCCCAACATTAGAAGTGTCTTTGTCAGTCGTTTTCTTGTAAAATGGCCAACGGAGTCGATGTGAGGAGTCTAGCCACAGTTTTTCTTGGCTCTGGTCACAGAAAGTGTTCTGGGTCAAGGGCACGAAGCAGGATGTTTGTGAAGAGATGGTTCTCCTCTCAC--CCCCACAAGGCCGCTTGAATCTGTTATCTAAATTTGGGTGTCTCCATGAGTCACCGGGAGCCCATTTCCTCCGGAGAGCTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135515533 411 + 135778131 agcacaaaggaaagcgtgtgcaccaaagaacaaaggaagggtttacggctcccgtaggaaaaggtttctcccaggttctctgtcaagtctgtttatgcaaatgtaggattcaagtgtgttcagttcttattggtcgagatagtcaagccctaattgggtgGCTTCCCAACCCCAACATTAGAAGTGTCTTTGTCAGGCGTTTACTTGTAAAATGGCCAACGGAGTGGATGTGAGGAGTCTAG-CACAGTTTTTCTTGGCTCTGGTCACAGGAAGTGCTCTGGGTCAAGGGCACGAAGCAGGATGTTTGTGAAGAGATGGTTCTCCTCTCAC--CCCCACAAGGCCGCTTGAATCTGTTATCTAAATTTGGGTGTCTCCATTAGTCACCGGGAGCCCATTTCCTCCAGAGAGCTT
i chlSab2.chr7             I 18 C 0
s calJac3.chr3             190616054 410 - 190850796 agcacagaggaaagtgagcaagccaaa-aacgaaggaagcatttatggcttaagtaggaaaagttttctcccaggttctcagtcaagtctgtttatgcaaacgtaggattcgagtgtgttcagtttttattggttgagatagtcaatccctgattgggtgGCTTCCCAACTCCCAAATTAGACGTGTCTTTGTCAGATGTTTTCTTTTAAAATGGCCGGTGAGGTGGAGGTGTTGAATCTAGCCAGGGCTTTTTTTGGCTCTGGTTACAGACAGTGTTCTGGATCAAGGGCATGAAGCAGGATATTTGTCAAGAGACGGTTCCCCTCTCAG--CCCGCCGTGGCCACTTGAATCTGTTGTC-ACATCTGGATGTCTCCGTTAGTCACTGGGAGCCCACCTCCTCTGGAAAgctt
i calJac3.chr3             I 18 I 612
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e nomLeu3.chr7b            113851708 2081 + 115148730 M
e panTro4.chr4             193072825 21994 + 193495092 I

a score=876958.000000
s hg38.chr4_KI270925v1_alt    382413 673 +    555799  
s ponAbe2.chr4             198177987 684 + 198332218  
i ponAbe2.chr4             C 0 I 18
s rheMac3.chr5             183763951 684 + 184069350  
i rheMac3.chr5             C 0 I 18
s macFas5.chr5             189156344 684 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178575291 684 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135515944 684 + 135778131  
i chlSab2.chr7             C 0 I 18
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e nomLeu3.chr7b            113851708 2081 + 115148730 M
e panTro4.chr4             193072825 21994 + 193495092 I

a score=1352.000000
s hg38.chr4_KI270925v1_alt    383086 30 +    555799 ttctgccaaatatggtgattcgttttcttt
s macFas5.chr5             189157028 16 + 189454096 --------------gcatctcactgtcctt
i macFas5.chr5             C 0 I 2
s papAnu2.chr5             178575975 16 + 178775436 --------------gcatctCACTGTCCTT
i papAnu2.chr5             C 0 I 2
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135516628 18 + 135778131 I
e rheMac3.chr5             183764635 18 + 184069350 I
e nomLeu3.chr7b            113851708 2081 + 115148730 M
e ponAbe2.chr4             198178671 18 + 198332218 I
e panTro4.chr4             193072825 21994 + 193495092 I

a score=514628.000000
s hg38.chr4_KI270925v1_alt    383116 390 +    555799 cagcagcatccggcagacctgagaatgcttgttgaggcatttccttctatcagcttccctgccaccttctccagtcaatccccttgcttctctggctactcctcggtcttctctgagggctttggcttctctgccagacttctaaaccctgatgtttgtcctgggccttctcccttctctatctatcctccctatctccacttaagctaagttgggtcacgctttcaaatactatcatccctaagtgtatgacttccaaatttatattttctagtcctg-actagccatagattcctaataagcctctgaaacttaacacatccaaaacattcaatccaagaaaatagaactatccacccagttgcttcagccaaaagtctagaagtccca
s ponAbe2.chr4             198178689 390 + 198332218 cagcagcatctggcagacctgagaatgcttgttgaggcatttccttctattggcttccctgccaccttctcctgtcaatccccttgcttctctggctactcttcagtcttctctgagggcttctgcttctctgctagacttctaaaccctgatgtttgtcctgggccttctcccttctctatctatcctccctatctctacttaagctaagttgggtcacgctttcaaatactatcatccctaagtgcatgacttccaaatttatattttctagtcctg-actagccatagatttctattaggcctctgaaacttaatacatccaaaacattcaatccaaaaaaatagaactatccacccagttgcttcagccaaaagtgtagaagtccca
i ponAbe2.chr4             I 18 C 0
s rheMac3.chr5             183764653 391 + 184069350 cagcagtgtctggcagacttgagaatgcttgttgaggcatttccttctatcggcttccctgccaccttctcctgtcaatccccttgcttctctggctactcctcagtcttctctgagggcttctgcttctttgccagacctctaaaccctgatgtttgtcctgggccttctcccttctctatctatcctccctatctctgcttaagctaagttgggtcatgctttcaaataccatcatccctaagtgcatggcttccaaatgtatattttctagtcctgaactagccataggtttctaataggcctctgaaacttgacatatcctaaacatttaatccaagaaaatagaactatccacccagttgcttcagccaaaagtctacaagtccca
i rheMac3.chr5             I 18 C 0
s macFas5.chr5             189157046 391 + 189454096 cagcagtgtctggcagacttgagaatgcttgttgaggcatttccttctatcggcttccctgccaccttctcctgtcaatccccttgcttctctggctactcctcagtcttctctgagggcttctgcttctttgccagacctctaaaccctgatgtttgtcctgggccttctcccttctctatctatcctccctatctctgcttaagctaagttgggtcatgctttcaaataccatcatccctaagtgcatggcttccaaatgtatattttctagtcctgaactagccataggtttctaataggcctctgaaacttgacatatcctaaacATTTAATCCAAGAAAATAGAACTATCCACCCAGTTGCTTCAGCCAAAAGTCTACAAGTCCCA
i macFas5.chr5             I 2 C 0
s papAnu2.chr5             178575993 391 + 178775436 CAGCAGTGTCTGGCAGACTTGAGAATGCTTGTTGAGGCATTTCCTTCTATCGGCTTCCCTGCCACCTTCTCCTGTCAATCCCCTTGCTTCTCTGGCTACTCCTCAGTCTTCTCTGAGGGCTTCTGCTTCTTTGCCAGACCTCTAAACCCCGATGTTTGTCCTGGGCCTTCTCCCTTCTCTATCTATCCTCCCTATCTCTGCTTAAGCTAAGTTGGGTCATGCTTTCAAATACCATCATCCCTAAGTGCATGGCTTCCAAATGTATATTTTCTAGTCCTGAACTAGCCATAGGTTTCTAATAGCCCTCTGAAACTTGACATATCCTAAACATTTAATCCAAGAAAATAGAACTATCCATCCAGTTGCTTCAGCCAAAAGTCTACAAGTCCCA
i papAnu2.chr5             I 2 C 0
s chlSab2.chr7             135516646 388 + 135778131 cagcagtgtctggcagacttgagaatgcttgttgaggcatttccttctatcggcttccctgtcacctt---ctgtcaatccccttgcttctctggctactcctcagtcttctctgagggcttctgcttctctgccagacctctaaaccctgatgtttgtcctgggccttctcccttctctatctatcctccctatctctgctcaagctaagttgggtcatgctttcaaataccatcatccctaagtgcatggcttccaaatgtatattttctagtcctgaactagccataggtttctaataggcctctgaaacttgacatatcctaaacATTTAATCCAAGAAAATAGAACTATCCACCCAGTTGCTTCAGCCAAAAGTCTACAAGTCCCA
i chlSab2.chr7             I 18 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e nomLeu3.chr7b            113851708 2081 + 115148730 M
e panTro4.chr4             193072825 21994 + 193495092 I

a score=181450.000000
s hg38.chr4_KI270925v1_alt    383506 113 +    555799 ttctttccccctcacttcccacaatcagctcaccagctgaatctgccctcttctctctcacaccattgcaccacccagtccaactcatgaaccatttcctcaagtactgtaat
s ponAbe2.chr4             198179079 113 + 198332218 ttccttccccctcacttcccacaatcagctcaccagctgaatctgccctcttctctctcacaccattgcaccacccagtccaactcatgaaccattccctcaagtactgtaat
i ponAbe2.chr4             C 0 I 346
s nomLeu3.chr7b            113853791 113 + 115148730 TTCTTTCCCCCTCACTTCCCACAATCAGCTCACCAGCTgaatccgccctcttctctctcacaccattgcaccacccagtctaactcaggaaccatttcctcaagtactgtaat
i nomLeu3.chr7b            M 2081 C 0
s rheMac3.chr5             183765044 105 + 184069350 ttcttt--------cttcccactatcagctcaccagctgaacccaccctcttctctcttgcaccattgcaccacccagtccaactcatgaaccatttcctcagctactgtcat
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189157437 105 + 189454096 TTCTTT--------CTTCCCACTATCAGCTCACCAGCTgaacccaccctcttctctcttgcaccattgcaccacccagtccaactcatgaaccatttcctcagctactgtcat
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178576384 105 + 178775436 TTCTTT--------CTTCCCACTATCAGCTCACCAGCTGAACCCACCCTCTTCTCTCTTGCACCATTGCACCACCCAGTCCAACTCATGAACCATTTCCTCAGCTACTGTCAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135517034 105 + 135778131 TTCTTT--------CTTCCCACTATCAGCTCACCAGCTgaacccaccctcttctctcttgcaccattgcaccacccagtccaactcatgaagcatttcctcagctacttccat
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e panTro4.chr4             193072825 21994 + 193495092 I

a score=488509.000000
s hg38.chr4_KI270925v1_alt    383619 282 +    555799 gacttcttaactgtttctgttcttgcccacttataatcccttttccacagaggaaacacaataatctattttaggtataaataaaagcatgtcattctttggttaagccttccagtagcttcccattcctcttggataaaattcaaactccttactatgttccacagagccctgtattatctggctcttgtttatctttctatttttatctcctgccacactctgcctggcttaccgcatctgcgtcacattgaccttctgtgagtatttcaaatgctcttt
s ponAbe2.chr4             198179538 280 + 198332218 gacttcttaactgt--ctgttcttgcccacttataatcccttttccacagaggaaacacaatgatctattttaggtacaaataaaagtatgtcattctttggttaagccttccagtagcttcccattcctcttggataaaattcaaactccttattatgttccacaaagccctgtattatctggctcttgtttatctttctatttttatctactgccacactctgcctggcttactgcatctgcatcaccttgaccttctGTGAGTATTTCAATTGCACTTC
i ponAbe2.chr4             I 346 C 0
s nomLeu3.chr7b            113853904 280 + 115148730 gacttcttaactgt--ctgttcttgcccacttataatcccttttccaaagaggaaacacaatgatctattttaggtgtaaataaaagcatgtcattctttggttaagccttccagtagcttcccattcctcttggataaaattcaaactccttactgtgttccacaaagccctgtattatctggctcttgtttatctttctatttttatctcctgccacactctgcctggcttaccgcatctgcgtcaccttgaccttctGTGAGTATTTCAAATGTGCTTC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183765149 278 + 184069350 gacttcttaactgtttctgttcttgccctcttataatcccttttccacagaggaaacacaacgatctgttttaggtatgaataaaagcatgtcatt-tttggttaagccttccagtagcttcccattcctctaggataaaattcaaactcctta---tgttctacaaagccctgtattatctggttcttgttcatctttccatttttacgtactgacacactctgtctggcttaccacatctccatcacattgaccttctgtgagtatttcaaatgtgcttc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189157542 278 + 189454096 gacttcttaactgtttctgttcttgccctcttataatcccttttccacagaggaaacacaacgatctattttaggtatgaataaaagcatgtcatt-tttggttaagccttccagtagcttcccattcctctaggataaaattcaaactcctta---tgttctacaaagccctgtattatctggttcttgttcatctttccatttttacgtactgacacactctgtctggcttaccacatctccatcacattgaccttctgtgagtatttcaaatgtgcttc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178576489 278 + 178775436 GACTTCTTAACTGTTTCTGTTCTTGCCCTCTTATAATCCCTTTTCCACAGAGGAAACACAACGATCTATTTTAGGTATGAATAAAAGCATGTCATT-TTTGGTTAAGCCTTCCAGTAGCTTCCCATTCCTCTaggataaaattcaaactcctta---TGTTCTACAAAGCCCTGTATTATCTGGTTCTTGTTCATCTTTCCATTTTTACCTACTGCCACACTCTGCCTGGCTTACCACATCTCCATCACATTGACCTTCTGTGAGTATTTCAAATGTGCTTC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135517139 277 + 135778131 gacttcttaactgtttctgttcttgccctcttataatcccttttccacagaggaaacacaatgat-tattttaggtatgaataaaagcatgtcatt-tttggttaagccttccagtagcttcccattcctctaggataaaattcaaactcctta---tgttctacaaagccctgtattatctggttcttgttcatctttccatttttacctactgccacactctgcctggcttaccacatctccatcacattgaccttctgtgagtatttcaaatgtgcttc
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e panTro4.chr4             193072825 21994 + 193495092 I

a score=1365.000000
s hg38.chr4_KI270925v1_alt    383901 1 +    555799 a
s ponAbe2.chr4             198179818 1 + 198332218 A
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113854184 1 + 115148730 A
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183765427 1 + 184069350 a
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189157820 1 + 189454096 a
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178576767 1 + 178775436 A
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416 0 + 135778131 C
e panTro4.chr4             193072825 21994 + 193495092 I

a score=13944.000000
s hg38.chr4_KI270925v1_alt    383902 7 +    555799 ttcctca
s panTro4.chr4             193094819 7 + 193495092 TTCCTCA
i panTro4.chr4             I 21994 C 0
s ponAbe2.chr4             198179819 7 + 198332218 TTCCTCA
i ponAbe2.chr4             C 0 I 126
s nomLeu3.chr7b            113854185 7 + 115148730 TTCCTCA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183765428 7 + 184069350 ttcctca
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189157821 7 + 189454096 ttcctca
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178576768 7 + 178775436 TTCCTCA
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416 0 + 135778131 C

a score=3000.000000
s hg38.chr4_KI270925v1_alt    383909 2 +    555799 cc
s panTro4.chr4             193094826 2 + 193495092 CC
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113854192 2 + 115148730 CC
i nomLeu3.chr7b            C 0 I 2
s rheMac3.chr5             183765435 2 + 184069350 cc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189157828 2 + 189454096 cc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178576775 2 + 178775436 CC
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416 0 + 135778131 C
e ponAbe2.chr4             198179826 126 + 198332218 I

a score=1910.000000
s hg38.chr4_KI270925v1_alt    383911 2 +    555799 ac
s panTro4.chr4             193094828 2 + 193495092 AC
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183765437 2 + 184069350 ac
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189157830 2 + 189454096 ac
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178576777 2 + 178775436 AC
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416 0 + 135778131 C
e nomLeu3.chr7b            113854194 2 + 115148730 I
e ponAbe2.chr4             198179826 126 + 198332218 I

a score=19911.000000
s hg38.chr4_KI270925v1_alt    383913 19 +    555799 actccaagctcttctcttt
s panTro4.chr4             193094830 19 + 193495092 ACTCCAAGCTCCTCTCCTT
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113854196 19 + 115148730 ACTCCAAGCTTCTCTCCTT
i nomLeu3.chr7b            I 2 C 0
s rheMac3.chr5             183765439 18 + 184069350 actccaagcttctctcct-
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189157832 18 + 189454096 actccaagcttctctcct-
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178576779 18 + 178775436 ACTCCAAGCTTCTCTCCT-
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e ponAbe2.chr4             198179826 126 + 198332218 I

a score=30330.000000
s hg38.chr4_KI270925v1_alt    383932 16 +    555799 gcctgTTCCTCACCAC
s panTro4.chr4             193094849 16 + 193495092 GCCTGTTCCTCACCAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179952 16 + 198332218 GCCTGTTCCTCATCAC
i ponAbe2.chr4             I 126 C 0
s nomLeu3.chr7b            113854215 16 + 115148730 GCGTGTTCCTCACCAC
i nomLeu3.chr7b            C 0 T 35
s rheMac3.chr5             183765457 16 + 184069350 gcctgttcctcaccac
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189157850 16 + 189454096 gcctgttcctcaccac
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178576797 16 + 178775436 GCCTGTTCCTCACCAC
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C

a score=21234.000000
s hg38.chr4_KI270925v1_alt    383948 11 +    555799 ACTCCAAGCTT
s panTro4.chr4             193094865 11 + 193495092 ACTCCAAGCTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179968 11 + 198332218 ACTCCAAGCTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113854196 11 + 115148730 ACTCCAAGCTT
i nomLeu3.chr7b            T 35 C 0
s rheMac3.chr5             183765473 11 + 184069350 actccaagctt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189157866 11 + 189454096 actccaagctt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178576813 11 + 178775436 ACTCCAAGCTT
i papAnu2.chr5             C 0 T 56
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C

a score=4750.000000
s hg38.chr4_KI270925v1_alt    383959 13 +    555799 CTCTCCAAGCCTG
s panTro4.chr4             193094876 13 + 193495092 CTCTCCAAGCCTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179979 13 + 198332218 CTCTTCTTGCCTG
i ponAbe2.chr4             C 0 T 173
s nomLeu3.chr7b            113854207 13 + 115148730 CTCTCCTTGCGTG
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e papAnu2.chr5             178576824 56 + 178775436 T
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C

a score=8640.000000
s hg38.chr4_KI270925v1_alt    383972 9 +    555799 TTCCTCACC
s panTro4.chr4             193094889 9 + 193495092 TTCCTCACC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179819 9 + 198332218 TTCCTCACC
i ponAbe2.chr4             T 173 C 0
s nomLeu3.chr7b            113854220 9 + 115148730 TTCCTCACC
i nomLeu3.chr7b            C 0 T 35
s papAnu2.chr5             178576768 9 + 178775436 TTCCTCACC
i papAnu2.chr5             T 56 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416 0 + 135778131 C
e macFas5.chr5             189157877 0 + 189454096 C
e rheMac3.chr5             183765484 0 + 184069350 C

a score=21936.000000
s hg38.chr4_KI270925v1_alt    383981 26 +    555799 ACACTCCAAGCTTCTCTCCTTGCCTG
s panTro4.chr4             193094898 26 + 193495092 ACACTCCAAGCTTCTCTCCTTGCCTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179828 26 + 198332218 ACACTCCAAGCTTCTCTCCTTGCCTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113854194 26 + 115148730 ACACTCCAAGCTTCTCTCCTTGCGTG
i nomLeu3.chr7b            T 35 C 0
s papAnu2.chr5             178576777 25 + 178775436 ACACTCCAAGCTTCTCTCC-TGCCTG
i papAnu2.chr5             C 0 T 34
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C

a score=55818.000000
s hg38.chr4_KI270925v1_alt    384007 61 +    555799 TTCCTCACCACACTCCAAGCTCCTCTCCTTGCCTGTTCCTCACCACACTCCAAGCTTCTCT
s panTro4.chr4             193094924 61 + 193495092 TTCCTCACCACACTCCAAGCTTCTCTCCTTGCCTGTTCCTCACCACACTCCAAGCTTCTCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179854 61 + 198332218 TTCCTCACCACACTCCAAGCTTCTCTCCTTGCCTGTTCCTCACCACACTCCAAGCTTCTCT
i ponAbe2.chr4             C 0 T 89
s nomLeu3.chr7b            113854220 61 + 115148730 TTCCTCACCACACTCCAAGCTTCTCTCCTTGCCTGTTCCTCACCACACTCCAAGCTTCTCT
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178576768 60 + 178775436 TTCCTCACCACACTCCAAGCTTCTCTCC-TGCCTGTTCCTCACCACACTCCAAGCTTCTCT
i papAnu2.chr5             T 34 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C

a score=8676.000000
s hg38.chr4_KI270925v1_alt    384068 15 +    555799 CCTTGCCTGTTCCTC
s panTro4.chr4             193094985 15 + 193495092 CCTTGCCTGTTCCTC
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113854281 15 + 115148730 CCTTGCCTGTTCCTC
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178576828 15 + 178775436 CCTTGCCTGTTCCTC
i papAnu2.chr5             C 0 T 35
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C
e ponAbe2.chr4             198179915 89 + 198332218 T

a score=180.000000
s hg38.chr4_KI270925v1_alt    384083 1 +    555799 G
s panTro4.chr4             193095000 1 + 193495092 A
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113854296 1 + 115148730 A
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178576808 1 + 178775436 A
i papAnu2.chr5             T 35 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416 0 + 135778131 C
e macFas5.chr5             189157877 0 + 189454096 C
e rheMac3.chr5             183765484 0 + 184069350 C
e ponAbe2.chr4             198179915 89 + 198332218 T

a score=31927.000000
s hg38.chr4_KI270925v1_alt    384084 34 +    555799 CCACACTCCAAGCTCCTCTCCTTGCCTGTTCCTC
s panTro4.chr4             193095001 34 + 193495092 CCACACTCCAAGCTCCTCTCCTTGCCTGTTCCTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179826 34 + 198332218 CCACACTCCAAGCTTCTCTCCTTGCCTGTTCCTC
i ponAbe2.chr4             T 89 C 0
s nomLeu3.chr7b            113854297 34 + 115148730 CCACACTCCAAGCTTCTCTCCTTGCCTGTTCCTC
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178576809 34 + 178775436 CCACACTCCAAGCTTCTCTCCTTGCCTGTTCCTC
i papAnu2.chr5             C 0 T 35
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C

a score=27342.000000
s hg38.chr4_KI270925v1_alt    384118 29 +    555799 ACCACACTCCAAGCTTCTCTCCTTGCCTG
s panTro4.chr4             193095035 29 + 193495092 ACCACACTCCAAGCTCCTCTCCTTGCCTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179860 29 + 198332218 ACCACACTCCAAGCTTCTCTCCTTGCCTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113854331 29 + 115148730 ACCACACTCCAAGCTTCTCTCCTTGCCTG
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178576808 29 + 178775436 ACCACACTCCAAGCTTCTCTCCTTGCCTG
i papAnu2.chr5             T 35 T 69
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C

a score=18438.000000
s hg38.chr4_KI270925v1_alt    384147 22 +    555799 TTCCTCACCACACTCCAAGCTT
s panTro4.chr4             193095064 22 + 193495092 TTCCTCACCACACTCCAAGCTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179889 22 + 198332218 TTCCTCACCACACTCCAAGCTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113854360 21 + 115148730 TTCCTCACCACACTCC-AGCTT
i nomLeu3.chr7b            C 0 T 34
s papAnu2.chr5             178576768 22 + 178775436 TTCCTCACCACACTCCAAGCTT
i papAnu2.chr5             T 69 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C

a score=8627.000000
s hg38.chr4_KI270925v1_alt    384169 12 +    555799 CTCTCC-TGCCTG
s panTro4.chr4             193095086 13 + 193495092 CTCTCCTTGCCTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179911 12 + 198332218 CTCTCT-TGCCTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113854347 13 + 115148730 CTCTCCTTGCCTG
i nomLeu3.chr7b            T 34 C 0
s papAnu2.chr5             178576790 12 + 178775436 CTCTCC-TGCCTG
i papAnu2.chr5             C 0 T 34
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C

a score=15370.000000
s hg38.chr4_KI270925v1_alt    384181 16 +    555799 TTCCTCACCACACTCC
s panTro4.chr4             193095099 16 + 193495092 TTCCTCACCACACTCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179923 16 + 198332218 TTCCTCACCACACTCC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113854360 16 + 115148730 TTCCTCACCACACTCC
i nomLeu3.chr7b            C 0 T 35
s papAnu2.chr5             178576768 16 + 178775436 TTCCTCACCACACTCC
i papAnu2.chr5             T 34 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C

a score=14303.000000
s hg38.chr4_KI270925v1_alt    384197 18 +    555799 AAGCTTCTCTCC-TGCCTG
s panTro4.chr4             193095115 19 + 193495092 AAGCTCCTCTCCTTGCCTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179939 18 + 198332218 AAGCTTCTCTCC-TGCCTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113854341 19 + 115148730 AAGCTTCTCTCCTTGCCTG
i nomLeu3.chr7b            T 35 C 0
s papAnu2.chr5             178576784 18 + 178775436 AAGCTTCTCTCC-TGCCTG
i papAnu2.chr5             C 0 T 34
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C

a score=14846.000000
s hg38.chr4_KI270925v1_alt    384215 16 +    555799 TTCCTCACCACACTCC
s panTro4.chr4             193095134 16 + 193495092 TTCCTCACCACACTCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179957 16 + 198332218 TTCCTCATCACACTCC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113854360 16 + 115148730 TTCCTCACCACACTCC
i nomLeu3.chr7b            C 0 T 35
s papAnu2.chr5             178576768 16 + 178775436 TTCCTCACCACACTCC
i papAnu2.chr5             T 34 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C

a score=7550.000000
s hg38.chr4_KI270925v1_alt    384231 8 +    555799 AAGCTTCT
s panTro4.chr4             193095150 8 + 193495092 AAGCTTCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179973 8 + 198332218 AAGCTTCT
i ponAbe2.chr4             C 0 I 35
s nomLeu3.chr7b            113854341 8 + 115148730 AAGCTTCT
i nomLeu3.chr7b            T 35 C 0
s papAnu2.chr5             178576784 8 + 178775436 AAGCTTCT
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416 0 + 135778131 C
e macFas5.chr5             189157877 0 + 189454096 C
e rheMac3.chr5             183765484 0 + 184069350 C

a score=3386.000000
s hg38.chr4_KI270925v1_alt    384239 4 +    555799 CTCC
s panTro4.chr4             193095158 4 + 193495092 CTCC
i panTro4.chr4             C 0 I 1702
s ponAbe2.chr4             198180016 4 + 198332218 CTTC
i ponAbe2.chr4             I 35 I 1
s nomLeu3.chr7b            113854349 4 + 115148730 CTCC
i nomLeu3.chr7b            C 0 I 1
s papAnu2.chr5             178576792 4 + 178775436 CTCC
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416 0 + 135778131 C
e macFas5.chr5             189157877 0 + 189454096 C
e rheMac3.chr5             183765484 0 + 184069350 C

a score=5820.000000
s hg38.chr4_KI270925v1_alt    384243 6 +    555799 TGCCTG
s panTro4.chr4             193096864 6 + 193495092 TGCCTG
i panTro4.chr4             I 1702 C 0
s ponAbe2.chr4             198180021 6 + 198332218 TGCCTG
i ponAbe2.chr4             I 1 C 0
s nomLeu3.chr7b            113854354 6 + 115148730 TGCCTG
i nomLeu3.chr7b            I 1 C 0
s papAnu2.chr5             178576796 6 + 178775436 TGCCTG
i papAnu2.chr5             C 0 T 34
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416 0 + 135778131 C
e macFas5.chr5             189157877 0 + 189454096 C
e rheMac3.chr5             183765484 0 + 184069350 C

a score=14846.000000
s hg38.chr4_KI270925v1_alt    384249 16 +    555799 TTCCTCACCACACTCC
s panTro4.chr4             193096870 16 + 193495092 TTCCTCACCACACTCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198180027 16 + 198332218 TTCCTCATCACACTCC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113854360 16 + 115148730 TTCCTCACCACACTCC
i nomLeu3.chr7b            C 0 T 128
s papAnu2.chr5             178576768 16 + 178775436 TTCCTCACCACACTCC
i papAnu2.chr5             T 34 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C

a score=6510.000000
s hg38.chr4_KI270925v1_alt    384265 12 +    555799 AAGCTTCTCTCC
s panTro4.chr4             193096886 12 + 193495092 AAGCTCCTCTCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198180043 12 + 198332218 AAGCTTCTCTCC
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178576784 12 + 178775436 AAGCTTCTCTCC
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C
e nomLeu3.chr7b            113854376 128 + 115148730 T

a score=9892.000000
s hg38.chr4_KI270925v1_alt    384277 12 +    555799 T-GCCTGTTCCTC
s panTro4.chr4             193096898 13 + 193495092 TTGCCTGTTCCTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198180055 13 + 198332218 TTGCCTGTTCCTC
i ponAbe2.chr4             C 0 T 139
s nomLeu3.chr7b            113854248 13 + 115148730 TTGCCTGTTCCTC
i nomLeu3.chr7b            T 128 C 0
s papAnu2.chr5             178576796 12 + 178775436 -TGCCTGTTCCTC
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C

a score=20290.000000
s hg38.chr4_KI270925v1_alt    384289 23 +    555799 ACCACACTCCAAGCTTCTCTCCT-
s panTro4.chr4             193096911 23 + 193495092 ACCACACTCCAAGCTTCTCTCCT-
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179929 23 + 198332218 ACCACACTCCAAGCTTCTCTCCT-
i ponAbe2.chr4             T 139 C 0
s nomLeu3.chr7b            113854261 23 + 115148730 ACCACACTCCAAGCTTCTCTCCT-
i nomLeu3.chr7b            C 0 T 34
s papAnu2.chr5             178576808 24 + 178775436 ACCACACTCCAAGCTTCTCTCCTT
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C

a score=10640.000000
s hg38.chr4_KI270925v1_alt    384312 11 +    555799 GCCTGTTCCTC
s panTro4.chr4             193096934 11 + 193495092 GCCTGTTCCTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179952 11 + 198332218 GCCTGTTCCTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113854250 11 + 115148730 GCCTGTTCCTC
i nomLeu3.chr7b            T 34 C 0
s papAnu2.chr5             178576832 11 + 178775436 GCCTGTTCCTC
i papAnu2.chr5             C 0 T 35
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C

a score=29589.000000
s hg38.chr4_KI270925v1_alt    384323 35 +    555799 ACCACACTCCAAGCTCCTCTCCAAGCCTGTTCCTC
s panTro4.chr4             193096945 35 + 193495092 ACCACACTCCAAGCTCCTCTCCTTGCCTGTCCCTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179963 35 + 198332218 ATCACACTCCAAGCTTCTCTTCTTGCCTGTTCCTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113854261 35 + 115148730 ACCACACTCCAAGCTTCTCTCCTTGCCTGTTCCTC
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178576808 35 + 178775436 ACCACACTCCAAGCTTCTCTCCTTGCCTGTTCCTC
i papAnu2.chr5             T 35 T 69
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C

a score=21199.000000
s hg38.chr4_KI270925v1_alt    384358 24 +    555799 ACCACACTCCAAGCTTCTCTCCTC
s panTro4.chr4             193096980 24 + 193495092 ACCACACTCCAAGCTTCTCTCCTT
i panTro4.chr4             C 0 I 1
s ponAbe2.chr4             198179998 24 + 198332218 ACCACACTCCAAGCTTCTCTTCTT
i ponAbe2.chr4             C 0 T 137
s nomLeu3.chr7b            113854296 24 + 115148730 ACCACACTCCAAGCTTCTCTCCTT
i nomLeu3.chr7b            C 0 I 1
s papAnu2.chr5             178576774 24 + 178775436 ACCACACTCCAAGCTTCTCTCCTG
i papAnu2.chr5             T 69 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C

a score=3910.000000
s hg38.chr4_KI270925v1_alt    384382 4 +    555799 CCTG
s panTro4.chr4             193097005 4 + 193495092 CCTG
i panTro4.chr4             I 1 C 0
s ponAbe2.chr4             198179885 4 + 198332218 CCTG
i ponAbe2.chr4             T 137 C 0
s nomLeu3.chr7b            113854321 4 + 115148730 CCTG
i nomLeu3.chr7b            I 1 C 0
s papAnu2.chr5             178576798 4 + 178775436 CCTG
i papAnu2.chr5             C 0 T 34
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416 0 + 135778131 C
e macFas5.chr5             189157877 0 + 189454096 C
e rheMac3.chr5             183765484 0 + 184069350 C

a score=25511.000000
s hg38.chr4_KI270925v1_alt    384386 28 +    555799 TTCCTCACCACACTCCAAGTTTCTCTCC
s panTro4.chr4             193097009 28 + 193495092 TTCCTCACCACACTCCAAGTTTCTCTCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179889 28 + 198332218 TTCCTCACCACACTCCAAGCTTCTCTCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113854325 28 + 115148730 TTCCTCACCACACTCCAAGCTTCTCTCC
i nomLeu3.chr7b            C 0 T 139
s papAnu2.chr5             178576768 28 + 178775436 TTCCTCACCACACTCCAAGCTTCTCTCC
i papAnu2.chr5             T 34 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C

a score=3200.000000
s hg38.chr4_KI270925v1_alt    384414 6 +    555799 T-GCCTG
s panTro4.chr4             193097037 7 + 193495092 TTGCCTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179917 6 + 198332218 T-GCCTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113854214 6 + 115148730 T-GCGTG
i nomLeu3.chr7b            T 139 C 0
s papAnu2.chr5             178576796 6 + 178775436 T-GCCTG
i papAnu2.chr5             C 0 T 34
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416 0 + 135778131 C
e macFas5.chr5             189157877 0 + 189454096 C
e rheMac3.chr5             183765484 0 + 184069350 C

a score=24648.000000
s hg38.chr4_KI270925v1_alt    384420 29 +    555799 TTCCTCACCACACTCCAAGCTTCTCTCCT
s panTro4.chr4             193097044 27 + 193495092 TTCCTCACCAC--TCCAAGCTCCTCTCCT
i panTro4.chr4             C 0 I 1
s ponAbe2.chr4             198179923 29 + 198332218 TTCCTCACCACACTCCAAGCTTCTCTCCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113854220 29 + 115148730 TTCCTCACCACACTCCAAGCTTCTCTCCT
i nomLeu3.chr7b            C 0 T 64
s papAnu2.chr5             178576768 29 + 178775436 TTCCTCACCACACTCCAAGCTTCTCTCCT
i papAnu2.chr5             T 34 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C

a score=2946.000000
s hg38.chr4_KI270925v1_alt    384449 5 +    555799 GCCTG
s panTro4.chr4             193097072 5 + 193495092 GCCTG
i panTro4.chr4             I 1 C 0
s ponAbe2.chr4             198179952 5 + 198332218 GCCTG
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178576797 5 + 178775436 GCCTG
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416 0 + 135778131 C
e macFas5.chr5             189157877 0 + 189454096 C
e rheMac3.chr5             183765484 0 + 184069350 C
e nomLeu3.chr7b            113854249 64 + 115148730 T

a score=34286.000000
s hg38.chr4_KI270925v1_alt    384454 41 +    555799 TTCCTCACCACACTCCAAGCTTCTCTCCAAGCCTGTTCCTC
s panTro4.chr4             193097077 41 + 193495092 TTCCTCACCACACTCCAAGCTCCTCTCCAAGCCTGTTCCTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179957 41 + 198332218 TTCCTCATCACACTCCAAGCTTCTCTTCTTGCCTGTTCCTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113854185 41 + 115148730 TTCCTCACCACACTCCAAGCTTCTCTCCTTGCGTGTTCCTC
i nomLeu3.chr7b            T 64 C 0
s papAnu2.chr5             178576802 41 + 178775436 TTCCTCACCACACTCCAAGCTTCTCTCCTTGCCTGTTCCTC
i papAnu2.chr5             C 0 T 69
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C

a score=62542.000000
s hg38.chr4_KI270925v1_alt    384495 70 +    555799 ACCACACTCCAAGCTCCTCTCCTTGCCTGTTCCTCACCACACTCCAAGCTCCTCTCCTTGCCTGTTCCTC
s panTro4.chr4             193097118 70 + 193495092 ACCACACTCCAAGCTCCTCTCCTTGCCTGTTCCTCACCACACTCCAAGCTCCTCTCCTTGCCTGTTCCTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179998 70 + 198332218 ACCACACTCCAAGCTTCTCTTCTTGCCTGTTCCTCATCACACTCCAAGCTTCTCTCCTTGCCTGTTCCTC
i ponAbe2.chr4             C 0 T 150
s nomLeu3.chr7b            113854226 70 + 115148730 ACCACACTCCAAGCTTCTCTCCTTGCCTGTTCCTCACCACACTCCAAGCTTCTCTCCTTGCCTGTTCCTC
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178576774 69 + 178775436 ACCACACTCCAAGCTTCTCTCC-TGCCTGTTCCTCACCACACTCCAAGCTTCTCTCCTTGCCTGTTCCTC
i papAnu2.chr5             T 69 T 35
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C

a score=12102.000000
s hg38.chr4_KI270925v1_alt    384565 24 +    555799 ACCACACTCCAAGCTTCTCTCCAA
s panTro4.chr4             193097188 24 + 193495092 ACCACACTCCAAGCTCCTCTCCTT
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113854296 24 + 115148730 ACCACACTCCAAGCTTCTCTCCTT
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178576808 24 + 178775436 ACCACACTCCAAGCTTCTCTCCTT
i papAnu2.chr5             T 35 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C
e ponAbe2.chr4             198180068 150 + 198332218 T

a score=4910.000000
s hg38.chr4_KI270925v1_alt    384589 5 +    555799 GCCTG
s panTro4.chr4             193097212 5 + 193495092 GCCTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179918 5 + 198332218 GCCTG
i ponAbe2.chr4             T 150 C 0
s nomLeu3.chr7b            113854320 5 + 115148730 GCCTG
i nomLeu3.chr7b            C 0 T 140
s papAnu2.chr5             178576832 5 + 178775436 GCCTG
i papAnu2.chr5             C 0 T 69
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416 0 + 135778131 C
e macFas5.chr5             189157877 0 + 189454096 C
e rheMac3.chr5             183765484 0 + 184069350 C

a score=27252.000000
s hg38.chr4_KI270925v1_alt    384594 29 +    555799 TTCCTCACCACACTCCAAGCTTCTCTCCT
s panTro4.chr4             193097217 29 + 193495092 TTCCTCACCACACTCCAAGCTCCTCTCCT
i panTro4.chr4             C 0 I 176
s ponAbe2.chr4             198179923 29 + 198332218 TTCCTCACCACACTCCAAGCTTCTCTCCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113854185 29 + 115148730 TTCCTCACCACACTCCAAGCTTCTCTCCT
i nomLeu3.chr7b            T 140 I 1
s papAnu2.chr5             178576768 29 + 178775436 TTCCTCACCACACTCCAAGCTTCTCTCCT
i papAnu2.chr5             T 69 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C

a score=41529.000000
s hg38.chr4_KI270925v1_alt    384623 46 +    555799 GCCTGTTCCTCACCACACTCCAAGCTCCTCTCCTTGCCTGTTCCTC
s panTro4.chr4             193097422 46 + 193495092 GCCTGTTCCTCACCACACTCCAAGCTCCTCTCCTTGCCTGTTCCTC
i panTro4.chr4             I 176 C 0
s ponAbe2.chr4             198179952 46 + 198332218 GCCTGTTCCTCATCACACTCCAAGCTTCTCTTCTTGCCTGTTCCTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113854215 46 + 115148730 GCGTGTTCCTCACCACACTCCAAGCTTCTCTCCTTGCCTGTTCCTC
i nomLeu3.chr7b            I 1 C 0
s papAnu2.chr5             178576797 46 + 178775436 GCCTGTTCCTCACCACACTCCAAGCTTCTCTCCTTGCCTGTTCCTC
i papAnu2.chr5             C 0 T 69
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C

a score=23975.000000
s hg38.chr4_KI270925v1_alt    384669 29 +    555799 ACCACACTCCAAGCTCCTCTCCTTGCCTG
s panTro4.chr4             193097468 29 + 193495092 ACCACACTCCAAACTCCTCTCCTTGCCTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179998 29 + 198332218 ACCACACTCCAAGCTTCTCTTCTTGCCTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113854261 29 + 115148730 ACCACACTCCAAGCTTCTCTCCTTGCCTG
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178576774 28 + 178775436 ACCACACTCCAAGCTTCTCTCC-TGCCTG
i papAnu2.chr5             T 69 T 34
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C

a score=21908.000000
s hg38.chr4_KI270925v1_alt    384698 24 +    555799 TTCCTCACCACACTCCAAGCTTCC
s panTro4.chr4             193097497 24 + 193495092 TTCCTCACCACACTCCAAGCTTCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198180027 24 + 198332218 TTCCTCATCACACTCCAAGCTTCT
i ponAbe2.chr4             C 0 T 70
s nomLeu3.chr7b            113854290 24 + 115148730 TTCCTCACCACACTCCAAGCTTCT
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178576768 24 + 178775436 TTCCTCACCACACTCCAAGCTTCT
i papAnu2.chr5             T 34 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C

a score=46139.000000
s hg38.chr4_KI270925v1_alt    384722 52 +    555799 CTCCTTGCCTGTTCCTCACCACACTCCAAGCTTCCCTCCTTGCCTGTTCCTC
s panTro4.chr4             193097521 52 + 193495092 CTCCTTGCCTGTTCCTCACCACACTCCAAGCTCCTCTCCTTGCCTGTTCCTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179981 52 + 198332218 CTTCTTGCCTGTTCCTCACCACACTCCAAGCTTCTCTTCTTGCCTGTTCCTC
i ponAbe2.chr4             T 70 C 0
s nomLeu3.chr7b            113854314 52 + 115148730 CTCCTTGCCTGTTCCTCACCACACTCCAAGCTTCTCTCCTTGCCTGTTCCTC
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178576792 51 + 178775436 -CTCCTGCCTGTTCCTCACCACACTCCAAGCTTCTCTCCTTGCCTGTTCCTC
i papAnu2.chr5             C 0 T 35
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C

a score=9116.000000
s hg38.chr4_KI270925v1_alt    384774 10 +    555799 ACCACACTCC
s panTro4.chr4             193097573 10 + 193495092 ACCACACTCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198180033 10 + 198332218 ATCACACTCC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113854366 10 + 115148730 ACCACACTCC
i nomLeu3.chr7b            C 0 T 35
s papAnu2.chr5             178576808 10 + 178775436 ACCACACTCC
i papAnu2.chr5             T 35 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C

a score=5640.000000
s hg38.chr4_KI270925v1_alt    384784 6 +    555799 AAGCTT
s panTro4.chr4             193097583 6 + 193495092 AAGCTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198180043 6 + 198332218 AAGCTT
i ponAbe2.chr4             C 0 T 132
s nomLeu3.chr7b            113854341 6 + 115148730 AAGCTT
i nomLeu3.chr7b            T 35 C 0
s papAnu2.chr5             178576818 6 + 178775436 AAGCTT
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416 0 + 135778131 C
e macFas5.chr5             189157877 0 + 189454096 C
e rheMac3.chr5             183765484 0 + 184069350 C

a score=912.000000
s hg38.chr4_KI270925v1_alt    384790 7 +    555799 CTCTCCA-
s panTro4.chr4             193097589 6 + 193495092 CTCTCC--
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113854347 6 + 115148730 CTCTCC--
i nomLeu3.chr7b            C 0 I 1
s papAnu2.chr5             178576824 7 + 178775436 CTCTCC-T
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416 0 + 135778131 C
e macFas5.chr5             189157877 0 + 189454096 C
e rheMac3.chr5             183765484 0 + 184069350 C
e ponAbe2.chr4             198180049 132 + 198332218 T

a score=10694.000000
s hg38.chr4_KI270925v1_alt    384797 12 +    555799 AGCCTGTTCCTC
s panTro4.chr4             193097595 12 + 193495092 TGCCTGTTCCTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179917 12 + 198332218 TGCCTGTTCCTC
i ponAbe2.chr4             T 132 C 0
s nomLeu3.chr7b            113854354 12 + 115148730 TGCCTGTTCCTC
i nomLeu3.chr7b            I 1 C 0
s papAnu2.chr5             178576831 12 + 178775436 TGCCTGTTCCTC
i papAnu2.chr5             C 0 T 69
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C

a score=9640.000000
s hg38.chr4_KI270925v1_alt    384809 10 +    555799 ACCACACTCC
s panTro4.chr4             193097607 10 + 193495092 ACCACACTCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179929 10 + 198332218 ACCACACTCC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113854366 10 + 115148730 ACCACACTCC
i nomLeu3.chr7b            C 0 T 35
s papAnu2.chr5             178576774 10 + 178775436 ACCACACTCC
i papAnu2.chr5             T 69 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C

a score=11460.000000
s hg38.chr4_KI270925v1_alt    384819 12 +    555799 AAGCTTCTCTCC
s panTro4.chr4             193097617 12 + 193495092 AAGCTTCTCTCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179939 12 + 198332218 AAGCTTCTCTCC
i ponAbe2.chr4             C 0 T 126
s nomLeu3.chr7b            113854341 12 + 115148730 AAGCTTCTCTCC
i nomLeu3.chr7b            T 35 C 0
s papAnu2.chr5             178576784 12 + 178775436 AAGCTTCTCTCC
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C

a score=2605.000000
s hg38.chr4_KI270925v1_alt    384831 7 +    555799 AAGCCTG
s panTro4.chr4             193097629 7 + 193495092 TTGCCTG
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113854353 7 + 115148730 TTGCCTG
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178576796 6 + 178775436 -TGCCTG
i papAnu2.chr5             C 0 T 34
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416 0 + 135778131 C
e macFas5.chr5             189157877 0 + 189454096 C
e rheMac3.chr5             183765484 0 + 184069350 C
e ponAbe2.chr4             198179951 126 + 198332218 T

a score=3072.000000
s hg38.chr4_KI270925v1_alt    384838 6 +    555799 TTCCTC
s panTro4.chr4             193097636 6 + 193495092 TCCCTC
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113854360 6 + 115148730 TTCCTC
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178576768 6 + 178775436 TTCCTC
i papAnu2.chr5             T 34 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416 0 + 135778131 C
e macFas5.chr5             189157877 0 + 189454096 C
e rheMac3.chr5             183765484 0 + 184069350 C
e ponAbe2.chr4             198179951 126 + 198332218 T

a score=9640.000000
s hg38.chr4_KI270925v1_alt    384844 10 +    555799 ACCACACTCC
s panTro4.chr4             193097642 10 + 193495092 ACCACACTCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179825 10 + 198332218 ACCACACTCC
i ponAbe2.chr4             T 126 C 0
s nomLeu3.chr7b            113854366 10 + 115148730 ACCACACTCC
i nomLeu3.chr7b            C 0 T 35
s papAnu2.chr5             178576774 10 + 178775436 ACCACACTCC
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C

a score=4728.000000
s hg38.chr4_KI270925v1_alt    384854 19 +    555799 AAGCTT---------------------------------------------------------------------CTCTCCAAGCCTG
s panTro4.chr4             193097652 88 + 193495092 AAGCTTCTCTCCTTGCCTGTTCCTCACACACACTCCAAGTTTCTCTCCTTGCCTGTTCCTCACCACTCCAAGCTCCTCTCCTTGCCTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179835 19 + 198332218 AAGCTT---------------------------------------------------------------------CTCTCCTTGCCTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113854341 19 + 115148730 AAGCTT---------------------------------------------------------------------CTCTCCTTGCCTG
i nomLeu3.chr7b            T 35 C 0
s papAnu2.chr5             178576784 18 + 178775436 AAGCTT---------------------------------------------------------------------CTCTCC-TGCCTG
i papAnu2.chr5             C 0 T 34
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C

a score=15370.000000
s hg38.chr4_KI270925v1_alt    384873 16 +    555799 TTCCTCACCACACTCC
s panTro4.chr4             193097740 16 + 193495092 TTCCTCACCACACTCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179854 16 + 198332218 TTCCTCACCACACTCC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113854360 16 + 115148730 TTCCTCACCACACTCC
i nomLeu3.chr7b            C 0 T 140
s papAnu2.chr5             178576768 16 + 178775436 TTCCTCACCACACTCC
i papAnu2.chr5             T 34 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C

a score=9210.000000
s hg38.chr4_KI270925v1_alt    384889 14 +    555799 AAGCTTCTCTCCAA
s panTro4.chr4             193097756 14 + 193495092 AAGCTCCTCTCCTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179870 14 + 198332218 AAGCTTCTCTCCTT
i ponAbe2.chr4             C 0 I 68
s nomLeu3.chr7b            113854236 14 + 115148730 AAGCTTCTCTCCTT
i nomLeu3.chr7b            T 140 C 0
s papAnu2.chr5             178576784 13 + 178775436 AAGCTTCTCTCCT-
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C

a score=4910.000000
s hg38.chr4_KI270925v1_alt    384903 5 +    555799 GCCTG
s panTro4.chr4             193097770 5 + 193495092 GCCTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179952 5 + 198332218 GCCTG
i ponAbe2.chr4             I 68 C 0
s nomLeu3.chr7b            113854250 5 + 115148730 GCCTG
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178576797 5 + 178775436 GCCTG
i papAnu2.chr5             C 0 T 34
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416 0 + 135778131 C
e macFas5.chr5             189157877 0 + 189454096 C
e rheMac3.chr5             183765484 0 + 184069350 C

a score=28406.000000
s hg38.chr4_KI270925v1_alt    384908 35 +    555799 TTCCTCACCACACTCCAAGCTTCTCTCCAAGCCTG
s panTro4.chr4             193097775 35 + 193495092 TTCCTCACCACACTCCAAGTTTCTCTCCTTGCCTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179957 35 + 198332218 TTCCTCATCACACTCCAAGCTTCTCTTCTTGCCTG
i ponAbe2.chr4             C 0 T 173
s nomLeu3.chr7b            113854255 35 + 115148730 TTCCTCACCACACTCCAAGCTTCTCTCCTTGCCTG
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178576768 34 + 178775436 TTCCTCACCACACTCCAAGCTTCTCTCC-TGCCTG
i papAnu2.chr5             T 34 T 34
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C

a score=62562.000000
s hg38.chr4_KI270925v1_alt    384943 70 +    555799 TTCCTCACCACACTCCAAGCTTCTCTCCAAGCCTGTTCCTCACCACACTCCAAGCTCCTCTCCTTGCCTG
s panTro4.chr4             193097810 70 + 193495092 TTCCTCACCACACTCCAAGCTCCTCTCCTTGCCTGTTCCTCACCACACTCCAAGCTTCTCTCCTTGCCTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179819 70 + 198332218 TTCCTCACCACACTCCAAGCTTCTCTCCTTGCCTGTTCCTCACCACACTCCAAGCTTCTCTCCTTGCCTG
i ponAbe2.chr4             T 173 C 0
s nomLeu3.chr7b            113854290 70 + 115148730 TTCCTCACCACACTCCAAGCTTCTCTCCTTGCCTGTTCCTCACCACACTCCAAGCTTCTCTCCTTGCCTG
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178576768 69 + 178775436 TTCCTCACCACACTCCAAGCTTCTCTCC-TGCCTGTTCCTCACCACACTCCAAGCTTCTCTCCTTGCCTG
i papAnu2.chr5             T 34 T 69
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C

a score=15370.000000
s hg38.chr4_KI270925v1_alt    385013 16 +    555799 TTCCTCACCACACTCC
s panTro4.chr4             193097880 16 + 193495092 TTCCTCACCACACTCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179889 16 + 198332218 TTCCTCACCACACTCC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113854360 16 + 115148730 TTCCTCACCACACTCC
i nomLeu3.chr7b            C 0 T 92
s papAnu2.chr5             178576768 16 + 178775436 TTCCTCACCACACTCC
i papAnu2.chr5             T 69 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C

a score=6483.000000
s hg38.chr4_KI270925v1_alt    385029 12 +    555799 AAGCTTCTCTCC
s panTro4.chr4             193097896 12 + 193495092 AAGCTTCTCTCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179905 12 + 198332218 AAGCTTCTCTCT
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178576784 12 + 178775436 AAGCTTCTCTCC
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416  0 + 135778131 C
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C
e nomLeu3.chr7b            113854376 92 + 115148730 T

a score=1696.000000
s hg38.chr4_KI270925v1_alt    385041 5 +    555799 T-GCCT
s panTro4.chr4             193097908 6 + 193495092 TTGCCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179917 5 + 198332218 T-GCCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113854284 5 + 115148730 -TGCCT
i nomLeu3.chr7b            T 92 C 0
s papAnu2.chr5             178576796 5 + 178775436 -TGCCT
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e chlSab2.chr7             135517416 0 + 135778131 C
e macFas5.chr5             189157877 0 + 189454096 C
e rheMac3.chr5             183765484 0 + 184069350 C

a score=39355.000000
s hg38.chr4_KI270925v1_alt    385046 29 +    555799 GTTCCTCACCACACTCCAAGCTCCTCTCC
s panTro4.chr4             193097914 29 + 193495092 GTTCCTCACCACACTCCAAGTTTCTCTCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179922 29 + 198332218 GTTCCTCACCACACTCCAAGCTTCTCTCC
i ponAbe2.chr4             C 0 I 34
s nomLeu3.chr7b            113854289 29 + 115148730 GTTCCTCACCACACTCCAAGCTTCTCTCC
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178576801 29 + 178775436 GTTCCTCACCACACTCCAAGCTTCTCTCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135517416 29 + 135778131 gttcctgaccacactccaagcttctctcc
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C

a score=2129.000000
s hg38.chr4_KI270925v1_alt    385075 4 +    555799 AAGC
s panTro4.chr4             193097943 4 + 193495092 AAGC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179985 4 + 198332218 TTGC
i ponAbe2.chr4             I 34 C 0
s nomLeu3.chr7b            113854318 4 + 115148730 TTGC
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178576830 4 + 178775436 TTGC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135517445 3 + 135778131 -tgc
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e canFam3.chr16             18061736 1474 -  59632846 I
e calJac3.chr3             190616464 612 - 190850796 I
e macFas5.chr5             189157877 0 + 189454096 C
e rheMac3.chr5             183765484 0 + 184069350 C

a score=5325.000000
s hg38.chr4_KI270925v1_alt    385079 3 +    555799 CTG
s panTro4.chr4             193097947 3 + 193495092 CTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179989 3 + 198332218 CTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113854322 3 + 115148730 CTG
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178576834 3 + 178775436 CTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135517448 3 + 135778131 ctg
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             18063210 3 -  59632846 CTA
i canFam3.chr16            I 1474 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e calJac3.chr3             190616464 612 - 190850796 I
e macFas5.chr5             189157877 0 + 189454096 C
e rheMac3.chr5             183765484 0 + 184069350 C

a score=13629.000000
s hg38.chr4_KI270925v1_alt    385082 6 +    555799 TTCCTC
s panTro4.chr4             193097950 6 + 193495092 TTCCTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179992 6 + 198332218 TTCCTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113854325 6 + 115148730 TTCCTC
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178576837 6 + 178775436 TTCCTC
i papAnu2.chr5             C 0 T 19
s chlSab2.chr7             135517451 6 + 135778131 ttcctc
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190617076 6 - 190850796 ttcctc
i calJac3.chr3             I 612 C 0
s canFam3.chr16             18063213 6 -  59632846 TTCTTA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e macFas5.chr5             189157877 0 + 189454096 C
e rheMac3.chr5             183765484 0 + 184069350 C

a score=25088.000000
s hg38.chr4_KI270925v1_alt    385088 16 +    555799 ACCACACTCCAAGCTC
s panTro4.chr4             193097956 16 + 193495092 ACCACACTCCAAGCTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198179998 16 + 198332218 ACCACACTCCAAGCTT
i ponAbe2.chr4             C 0 I 35
s nomLeu3.chr7b            113854331 16 + 115148730 ACCACACTCCAAGCTT
i nomLeu3.chr7b            C 0 I 34
s chlSab2.chr7             135517457 16 + 135778131 accacactccaagctt
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190617082 16 - 190850796 accgcactctaagcct
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18063219 16 -  59632846 ATCACTCTCAAAACTT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e papAnu2.chr5             178576843 19 + 178775436 T
e macFas5.chr5             189157877  0 + 189454096 C
e rheMac3.chr5             183765484  0 + 184069350 C

a score=1122065.000000
s hg38.chr4_KI270925v1_alt    385104 366 +    555799 CTCTCCTTGCCTGTTCCTCCATCTGAAATGCTGTTCCCCTAGACCTTTATATCTGTCTCCTCCATGTTTAACAATTTTATGGATTTTTATTTGGAATTCACATTAATATTGATGACATTAAAGTACATATAAATTCATATCCATATTGTATTTAGATCAATGATGGGTTTATATAAATGTAAATTTTAGTTCCAACAATTTGGGTCATCCGTGAATACAAGTATGTTTAATATA------------AAATGTATTTTAATAT--AAAAAAGCTAT----TGATAATGTCATATAGATTGGAA---ATTTTAAACTCTATTGATG--AACATTGAG-TCTCTTTTCACTTAAATGTTATATTGCATAAATCAAACACTTTGTCAaaacaaa
s panTro4.chr4             193097972 366 + 193495092 CTCTCCTTGCCTGTTCCTCCATCTGAAATGCTGTTCCTCCAGACCTTTATATCTGTCTCCTCCATGTTTAACAATTTTATGGATTTTTATTTGGAACTCACATTAATATTGATGACATTAAAGTATATATAAATTCATATCCATATTGTATTTAGATCAATGATGGGTTTATATAAATGTAAATTTTAGTTCCAACAATTTGGGTCATCCATGAATACAAGTATGtttaatata------------aaatgtattttaatat--aaaaaaGCTAT----TGATAATGTCATATAGATTGGAA---ATTTTAAACTCTATTGATG--AACATTGAG-TCTCTTTTCACTTAAATGTTATATTGCATAAATCAAACACTTTTTCAAAACAAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198180049 366 + 198332218 CTCTCCTTGCCTGTTCCTCCATCTGAAATGCTGTTCCCCCAGATCTTTATATCTGTCTCCTCCATGTTTAACAATTTTATGGATTTTTATTTGGAACTCACATTCATATTGACGACATTAAAGTACATATAAATTCATATCCATACTGTATTTAGATCAATGATGGGtttatataaatataaattttaGTTCCAACAATTTGGGTCATCCATGAATACAAGTATGTTTAACATA------------AAATGTATTTTAATAT--AAAAAAGCTAT----TGATAATGTCATATAGATTGGAA---ATTTTAAACTCTATTGATG--AACATTGAG-TCTCTTTTCACTTAAATGTTATATTGCATAAATCAAACACTTTGTCAAAACAAA
i ponAbe2.chr4             I 35 C 0
s nomLeu3.chr7b            113854381 366 + 115148730 CTCTCCTTGCCTGTTCCTCCATCTGAAATGCTGTTCCCCCAGATCTTTTTATCTGTCTCCTCCATGTTTAACAATTTTATGGATTTTTATTTGGAACTCACATTCATATTGATGACATTAAAGTACATATAAATTCATATCCATATTGTATTTAGATCAATGATGGGTTTATATAAATGTAAGTTTTAGTTCCAACAATTTGGGTCATCCATGAATACAAGTATGTTTAACATA------------AAATGTATTTTAATAT--AAAAAAGGTAT----TGATAATGTCATGTAGATTGGAA---ATTTTAAACTCTATTGATG--AATATTGAG-TCTCTTTTCACTTAAATGTTATATTGCATAAATCAAACACTTGGTCAaaacaaa
i nomLeu3.chr7b            I 34 C 0
s rheMac3.chr5             183765484 362 + 184069350 ctctccttgtctgttcctctacttgaaatgctgttccccTAGATCTTTATATCTGTCTCCTCTATGTTTAACAATTTTATGGATTTTTATTTCGGACTCATGTTCATATTGATGACATTAAAGTACATATAAATTCATATCTATATTGTATTTACATCAGTGATGGGTTTATATAAATGTAACTTTTAGTTCCAATGATTTG-GTCATCTATGAAAACAAGTATGTTTAATATA------------AAATGTATTTTAATATAGAAAAAAGCTAT----TAATAATATCATATAGATTGAAA---TTTTTAAACTCTATTGGTG--AACATTGAG-TCTCTTTTCACTTAAATGTTATACTGTGTGAATCAAGCACTTTGT-----CAAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189157877 362 + 189454096 ctctccttgtctgttcctctacttgaaatgctgttccccTAGATCTTTATATCTGTCTCCTCTATGTTTAACAATTTTATGGATTTTTATTTCGGACTCACGTTCATATTGATGACATTAAAGTACATATAAATTCATATCTATATTGTATTTACATCAGTGATGGGTTTATATAAATGTAACTTTTAGTTCCAATGATTTG-GTCATCTATGAAAACAAGTATGTTTAATATA------------AAATGTATTTTAATATAGAAAAAAGCTAT----TAATAATATCATATAGATTGAAA---TTTTTAAACTCTATTGGTG--AACATTGAG-TCTCTTTTCACTTAAATGTTATACTGTGTGAATCAAGCACTTTGT-----CAAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178576824 360 + 178775436 CTCTCCTTGCCTGTTCCTCTACTTGAAATGCTGTTCCCCTAGATCTTTATATCTGTCTCCTCTATGTTTAACAAttttatggatttttattttggactCACGTTCATATTGATGACATTAAAGTACATATAAATTCATATCTATATTGTATTTACATCAGTGATGGGTTTATATAAATGTAACTTTTAGTTCCAATGATTTGCATCATCTATGAAAACAAGTatgtttaatata------------aaatgtattttaatatagaaaaaagcTAT-------TAATATCATATAGATTGAAA---TTTTTAAACTCTATTAGTG--AACATTGAG-TCTCTTTTCACTTAAATGTTATACTGTGTGAATCAAGCACTTTGT-----CAAA
i papAnu2.chr5             T 19 C 0
s chlSab2.chr7             135517473 361 + 135778131 ctctccttgcctgttcctctacttgaaatgctattccccTAGATCTTTGTATCTGTCTCCTCTATGTTTAACAATTTTATGGATTTTTATTTCGGACTCACGTTCATATTGATGACATTAAAGTACATATAAATTCATATCTATATTGTATTTACATCAGTGATGGGTTTATATAAATGTAACTTTTAGTTCCAATGATTTGCGTCATCCATGAAAACAA--ATGTTTAATATA------------AAATGTATTTTAATATAGAAAAAAGCTAT----TAATAATATCATATAGATTGAAA---TTTTTAAACTCTATTGGTG--AACATTGAG-TCTCTTTTCACTTAAATGTTATACTGTGTGAATCAAGCACTTTGT-----CAAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190617098 356 - 190850796 ctctcctt---tgtccatctatccgcaatgctgttccctcAGGTCTTTACATCTTTCTCCTCTATGTTTAACAGTTTTGTGGATTTTTATTTGAGAATCACATTCATGTTGATGATGCTAAAGTACATCTAAATACATATCCATATTGTGTTTACATCAG-----------TATGAATGTAAATTTTAGTTCCAACAATTTGGATCATCCACGAATACAAGTATGTTTAACACA------------GAATGTATTTTAATATAGAAAAGAGCTAT----TGATAATGTCACAAAGATTGAAA---TTTTTAAACGCTCTTCGTGAAAACATTGGC-TCTCTTTCCACTTAAAGGTCATATTGCAAAAATCGAGCCCTTTGTCAAAACAAA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18063235 368 -  59632846 TTGTTCCTGCCT-TTTCTCTACCTGAAATGTT-TTCTCCTAAATC------TATGTCTCCTCTATTCCTAAAAATTTCATTCATTTTTGTTTGTGGCAAACATTCATATCAATGAGTTTAAAGTACATAT-ATTTCATATTTATATTATACTTAGATCAACTATGAGTTT------ATGTAAACTTTAATCCCAATTATTTAGATCATTCATGAATACAAGCATGTTTTTTATAGTTTAGTTAATTAAATATGGTTTAATAC--AGAAAAACTATCTAATAATAAAGTTATCTTGGTTGAGAAATATTTTTAATTCTGTTG-----ATCACTGACTTTTCCTTCCACTGGAATGTTATACTGTATGAATCAAGCACTTTGTTaaaaaaaa
i canFam3.chr16            C 0 I 270
e mm10.chr8                 87769542 194 - 129401213 I

a score=285558.000000
s hg38.chr4_KI270925v1_alt    385470 115 +    555799 gcaataaatgaacagacaggtaggtgataatttctggcaatgacaaagctatgtaaaaatctaacagtgtaaagtgatgtggcaggta-------------------------------------tgcgaaggcgtctaat---ttaagtaaaat
s panTro4.chr4             193098338 115 + 193495092 GCAATAAATGAACAGACAGGCAGGTGATAATTTCTGGCAGTGACAAAGCTATGTAAAAATCTAACAGTGTAAAGTGCTGTGGCAGGTA-------------------------------------TGCGAAGGCATCTAAT---TTAAGTAAAAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198180415 115 + 198332218 GCAATAAGTGAACAGACAGGTAGGTGATAATTTCTGACAGTGACAAAGCTATGTAAAAATCTAACAGTGTAAAGTGATGTGGCAGGTA-------------------------------------TGTGAAGGCGTCTAAT---TTAAGTAAAAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113854747 115 + 115148730 gcaataaatgaatagacagataggtgataatttctgacagtgacaaagctatgtaaaaagctaatggtgtaaagtgatgtggcaggta-------------------------------------tgcgaaggcatctaat---ttaagtaaaat
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183765846 154 + 184069350 GCGATAAATGAATGGACAGATAGGTGATAATTTCTGACAGTGACAAAGCTGTGTGACAAT-TAACAGTGTGAAGAGATGTGGCAGGTATGTGACAATCTAACACTGTAAAGTGATGTGGCAGGTATGCAAAGGCATCTAATTTATTAAGTAAAAT
i rheMac3.chr5             C 0 I 1
s macFas5.chr5             189158239 154 + 189454096 GCGATAAATGAATGGACAGATAGGTGATAATTTCTGACAGTGACAAAGCTGTGTGACAATCTAACAGTGTGAAGAGATGTGGCAGGTATGTGACAATCTAACACTGTAAAGTGATGTGGCAGGTATGCAAAGGCATCTAATTTATTAAGTAAAA-
i macFas5.chr5             C 0 I 1
s papAnu2.chr5             178577184 112 + 178775436 GTGATAAATGAATGGACAGATAGGTGATAATTTCTGACAGTGACAAAGCTGTGTGATAGTCTAACAGTGTGAAGAGATGTGGCAGGTATG--------TGACAATCTAA----------CAG---TGTAAAGT----------------------
i papAnu2.chr5             C 0 I 59
s chlSab2.chr7             135517834 118 + 135778131 GCGATAAATGAATGAACAGATAGGTGATAATTTCTGACAGTGACAAAGCTGTGTGACAATCTAACAGTGTGAAGAGATGTGGCAGGTA-------------------------------------TGCAAAGGCATCTTATTTATTAAGTAAAAT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190617454 115 - 190850796 GCCATAGATGAATGGACAGATAGGTGATAATTTCTGTCAGGGACAAAGCCGTGTAAAAATCGAACACTGTAAAGTGACGTGGCAGGTC-------------------------------------TGCGAAGGGGTCTAAT---TTAGGTAAAAT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18063873 111 -  59632846 gcaataaataagtggatgtatggataataacatctaataatgacaaagctctgtaaagatttaacagtgtaaTATACAATGGCTGGAG-------------------------------------AGTGA----GCCTGAT---TTACACAGCAG
i canFam3.chr16            I 270 C 0
e mm10.chr8                 87769542 194 - 129401213 I

a score=5836.000000
s hg38.chr4_KI270925v1_alt    385585 2 +    555799 ca
s panTro4.chr4             193098453 2 + 193495092 CA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198180530 2 + 198332218 CA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113854862 2 + 115148730 ca
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183766001 2 + 184069350 CA
i rheMac3.chr5             I 1 C 0
s macFas5.chr5             189158394 2 + 189454096 CA
i macFas5.chr5             I 1 C 0
s chlSab2.chr7             135517952 2 + 135778131 CA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190617569 2 - 190850796 CA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18063984 1 -  59632846 -A
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e papAnu2.chr5             178577296 59 + 178775436 I

a score=49806.000000
s hg38.chr4_KI270925v1_alt    385587 23 +    555799 gcaaggaggatctcagaagagat
s panTro4.chr4             193098455 23 + 193495092 GCAAGGAGGATTTCAGAAGAGAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198180532 23 + 198332218 GCAAGAAGGATCTCAGAAGAGAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113854864 23 + 115148730 gcaaggaggatctcagaagagat
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183766003 23 + 184069350 GCAAGGAGGATCTCAGAAGAGAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189158396 23 + 189454096 GCAAGGAGGATCTCAGAAGAGAT
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135517954 23 + 135778131 GCAAGGAGGATCTCAGAAGAGAT
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             18063985 22 -  59632846 GCAACAATGATCTCTGGAGAGA-
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e calJac3.chr3             190617571  0 - 190850796 C
e papAnu2.chr5             178577296 59 + 178775436 I

a score=275454.000000
s hg38.chr4_KI270925v1_alt    385610 104 +    555799 ggcgctggagtcatgttctcaagtagagatgagCATGTTTTGAAATGATATGGTCAGAGCCTCACGTGATTTGA--ATAC----TATTTCTTACATATCTACTGGTGAGT
s panTro4.chr4             193098478 104 + 193495092 GTCGCTGGAGTCATGTTCTCAAGTAGAGATGAGCGTGTTTTGAAATGATATGGTCAGAGCCTCACGTGATTTGA--ATAC----TATTTCTTACATATCTACTGGTGAGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198180555 104 + 198332218 GGCGCTGGAGTCATGTTCTCAAGTAGAGATAAACGTGTTTTGAAATGATATGGTCGGATCCTCATGTGACTTGA--ATAC----TATTTCTTACATATCTACTGGTGAGT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113854887 106 + 115148730 ggtgctggagtcatgttctcaagcagagatgagCGTGTTTTGAAATGATATGGTCAGATCCTCACGTGATTTGAATATAC----TATTTCTTACATATCTACTGGCGAGT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183766026 108 + 184069350 GGCACTGGAGTCATGTTCTCAAGTAGAGATGAGCATGTTTTGAAATGATATGTTCAGATCCTCATGTGATTTGA--ATACTGTTTATTTCTTACATATCTACTGGTGAAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189158419 108 + 189454096 GGCACTGGAGTCATGTTCTCAAGTAGAGATGAGCATGTTTTGAAATGATATGTTCAGATCCTCATGTGATTTGA--ATACTGTTTATTTCTTACATATCTACTGGTGAAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178577355 108 + 178775436 GGCACTGGAGTCATGTTCTCAAGTAGAGATGAGCATGTTTTGAAATGATATGTTCAGATCCTCATGTGATTTGA--ATACTGTTTATTTCTTACATATCTACTGGTGAAT
i papAnu2.chr5             I 59 C 0
s chlSab2.chr7             135517977 108 + 135778131 GGCACTGGAGTCATGTTCTCAAGTAGAGATGAGCATGTTTTGAAATGATATGTTCAGATCCTCATGTGATTTGA--ATACTGTTTATTTCTTACATATCTACTGGTGAAT
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             18064007  96 -  59632846 GACAC-----TTAGGTTCCTAAGTACAGATAATTGTGTTGTAAGATGATATATTCAGATCTTCAAGTAATTTGA--A-------TATTCATCATATATTTAGTAGTGAGT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87769542 194 - 129401213 I
e calJac3.chr3             190617571   0 - 190850796 C

a score=18278.000000
s hg38.chr4_KI270925v1_alt    385714 7 +    555799 TTCAGAG
s panTro4.chr4             193098582 7 + 193495092 TTCAGAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198180659 7 + 198332218 TTCAGAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113854993 7 + 115148730 TTCAGAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183766134 7 + 184069350 TTCCAAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189158527 7 + 189454096 TTCCAAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178577463 7 + 178775436 TTCCAAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135518085 7 + 135778131 TTCCAAG
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87769736 7 - 129401213 TCCTGAG
i mm10.chr8                I 194 C 0
s canFam3.chr16             18064103 7 -  59632846 TTTGGAG
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190617571 0 - 190850796 C

a score=134842.000000
s hg38.chr4_KI270925v1_alt    385721 35 +    555799 GCAAACAAGAACTTGAATGAGAGTACATTAGAAAA-------
s panTro4.chr4             193098589 35 + 193495092 GCAAACAAGAACTTGAATGAGAGTACATTAGAAAA-------
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198180666 35 + 198332218 GCAAACGAGAACTTGAATGAGAGTATATTAGAAAA-------
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113855000 35 + 115148730 GCAAACAAGAACTTGAATGAGAGTATATTAGAAAA-------
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183766141 35 + 184069350 GCAAAGAAGAACTTGAATGAGAATACATTAGAAAA-------
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189158534 35 + 189454096 GCAAAGAAGAACTTGAATGAGAATACATTAGAAAA-------
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178577470 35 + 178775436 GCAAAGAAGAACTTGAATGAGAATACATTAGAAAA-------
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135518092 35 + 135778131 GCAAAGAAGAACTTGAATGAGAATACATTAGAAAA-------
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190617571 35 - 190850796 GCAAACGAGAACTTGAATGAGAATACATTAGAAAG-------
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87769743 35 - 129401213 GTAAACAAGAACATAAATGAGCACATGTTACAAAA-------
i mm10.chr8                C 0 I 5
s canFam3.chr16             18064110 41 -  59632846 -AAAACAAGAATTTGAATAAGAACATGTTACAAGAAAAAAAG
i canFam3.chr16            C 0 C 0

a score=33978.000000
s hg38.chr4_KI270925v1_alt    385756 15 +    555799 C--TAATTATATTTCAA
s panTro4.chr4             193098624 15 + 193495092 C--TAATTATATTTCAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198180701 15 + 198332218 C--TAATTATATTTCAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113855035 15 + 115148730 C--CAATTATATTTCAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183766176 17 + 184069350 CAATAATGATATTTCAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189158569 17 + 189454096 CAATAATGATATTTCAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178577505 17 + 178775436 CAATAATGatatttcaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135518127 17 + 135778131 CAATAACGATATTTCAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190617606 16 - 190850796 CAATAAT-ATACTTCAA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18064151 15 -  59632846 --ATAACCCTACCCCAA
i canFam3.chr16            C 0 I 250
e mm10.chr8                 87769778  5 - 129401213 I

a score=257558.000000
s hg38.chr4_KI270925v1_alt    385771 87 +    555799 GAATATTTTACAAATGGTTTGAGGTAGGCTTAGtgatatggtttggctgtgttcccacccaattctcaccttgaattgtaataatcc
s panTro4.chr4             193098639 87 + 193495092 GAATATTTTACAAATGGTTTGAGGTAGGCTTAGtgatatggtttggctgtgttcccacccaattctcaccttgaattgtaataatcc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198180716 87 + 198332218 GAATATTTTACAAATGGTTTGAGGTAGGCTTAGtgatatggtttggctgtgttcccacccaattctcaccttgaattgtaataatcc
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113855050 87 + 115148730 GAATATTGTACAAATGGTTTGAGGTACGCTTAGtaatgtggtgtggctgtgttcccacccaattctcaccttgaattgtgataatcc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183766193 87 + 184069350 GAATATTTTACAAATGGTTTGAGGTAGGCTCAGtggtacggtttggctgtgttcccacccaattctcactttgaattgtcataatcc
i rheMac3.chr5             C 0 I 5747
s macFas5.chr5             189158586 87 + 189454096 GAATATTTTACAAATGGTTTGAGGTAGGCTCAGtggtacggtttggctgtgttcccacccaattctcactttgaattgtcataatcc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178577522 87 + 178775436 gaatattttacaaatggTTTGAGGTAGGCTTAGTGgtacggtttggctgtgttcccacccaattCTCACCTTGAATTGTCATAATCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135518144 87 + 135778131 GAATATTTTACAAATGGTTTGAGGTAGGCTCAGtggtacggtttggctgtgttcccacccaattctcaccttgaattgtcataatcc
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190617622 87 - 190850796 GAATATTTTCAGAATGGTTTAAAGTAGGCTTAGTGTGACAgtttggctgtgtccccacccaactgtcaccttgaactgtagtaatac
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87769778  5 - 129401213 I
e canFam3.chr16             18064166 250 -  59632846 I

a score=1458.000000
s hg38.chr4_KI270925v1_alt    385858 2 +    555799 ct
s panTro4.chr4             193098726 2 + 193495092 cc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198180803 2 + 198332218 cc
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113855137 2 + 115148730 cc
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189158673 2 + 189454096 tt
i macFas5.chr5             C 0 I 6497
s papAnu2.chr5             178577609 2 + 178775436 TT
i papAnu2.chr5             C 0 I 6493
s chlSab2.chr7             135518231 2 + 135778131 tt
i chlSab2.chr7             C 0 I 10
s calJac3.chr3             190617709 2 - 190850796 cc
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87769778 5 - 129401213 I
e canFam3.chr16             18064166 250 -  59632846 I
e rheMac3.chr5             183766280 5747 + 184069350 I

a score=5532.000000
s hg38.chr4_KI270925v1_alt    385860 15 +    555799 gcacattagccacct
s panTro4.chr4             193098728 15 + 193495092 gcatattagccacct
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198180805 15 + 198332218 tcacattagccacct
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113855139 15 + 115148730 acacattagccacct
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190617711  9 - 190850796 acatgtcga------
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87769778  5 - 129401213 I
e canFam3.chr16             18064166 250 -  59632846 I
e chlSab2.chr7             135518233 10 + 135778131 I
e papAnu2.chr5             178577611 6493 + 178775436 I
e macFas5.chr5             189158675 6497 + 189454096 I
e rheMac3.chr5             183766280 5747 + 184069350 I

a score=543929.000000
s hg38.chr4_KI270925v1_alt    385875 202 +    555799 ggcggggccaggtggagataattgaatcatggaggccgtttcctcccatactgttcccgtggtagtgaataagtctcatgagatctgttggttttatagaggggaatttccctgc-acaagctctctgttgcctgctgccatgtaagatgtgtccttcttcctcttcactttctgccatgattgtgaggcctccccagccatg
s panTro4.chr4             193098743 202 + 193495092 ggcagggccaggtggagataattgaatcatgggggccgtttcctcccatactgttcccatggtagtgaataagtctcatgagatctgatggttttatagaggggaatttccctgc-acaagctctctgttgcctgctgccatgtaagatgtgtccttcttcctcttcactttctgccatgattgtgaggcctccccagccatg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198180820 203 + 198332218 ggtggggccaagtggagataattgaatcatgggggccatttcttcccatactgttcccatggtagtgaataagtctcatgagatctgatggttttagagaggggaattttttaatgacaagctctctgttgcctgctgccatgtaagatgtttctaccttcctcttcactttctgccatgattgtgaggcctccccagccatg
i ponAbe2.chr4             C 0 M 1258
s nomLeu3.chr7b            113855154 201 + 115148730 ggca-ggctgggtggggataattgaatcatgggggctgtttcctcccatactgttcccatggtagtgaataagtctcaggagacctgatggttttatagaggggaagttccctgc-acaagttctctcttgcctgctgccatgtaagatgtgtcctgcttcctcttcactttctgccatgattgtgaggcctccccagccatg
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183772027 200 + 184069350 ggcagggccaggtggagataattgaatcatgggggtggttcc--cccatactgttcccatggtagtgaataagtctcacaagatctgatggttttataaaggggagtttccctgc-acaagctctctcttgcctgctgctttgtaagatgtgtcttgcttccccttcactttctgccatgattgtgagacctccccaggcatg
i rheMac3.chr5             I 5747 C 0
s macFas5.chr5             189165172 200 + 189454096 ggcagggccaggtggagataattgaatcatgggggtggttcc--cccatactgttcccatggtagtgaataagtctcacaagatctgatggttttataaaggggagtttccctgc-acaagctctctcttgcctgctgctttgtaagatgtgtcttgcttccccttcactttctgccatgattgtgagacctccccaggcatg
i macFas5.chr5             I 6497 C 0
s papAnu2.chr5             178584104 200 + 178775436 ggcagggccaggtggagataattgaatcatgggggtggttcc--cccatactgttcccatggtagtgaataagtctcacaagatctgatggttttataaaggggagtttccctgc-acaagctctctcttgcctgctgccttgttagatgtgtcttgcttccccttcactttctgccatgattgtgagacctccccaggcatg
i papAnu2.chr5             I 6493 C 0
s chlSab2.chr7             135518243 200 + 135778131 ggcagggccaggtggagataattgaatcatggggttggttcc--cccatactgttcccatggtagtgaataagtctcacaagatctgatggttttataaaggggagtttccctgc-acaagctctctcttgcctgctgccttgtaagatgtgtcttgcttccccttcaccttctgccatgattgtgagacctccccaggcatg
i chlSab2.chr7             I 10 C 0
s calJac3.chr3             190617720 189 - 190850796 -gcagggccaggtggaattaattgaatcgtggggaaggttccc-cccacactgttcgcgcggtagtgaatcagtctcacaggatctgatggttttatgaaggggagtcccacggc-acaag-----------ctgcggccacggaaaacgtgtcttgcttcccgtccactttctgctgtgactgtgaggccttcccagccacg
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87769778   5 - 129401213 I
e canFam3.chr16             18064166 250 -  59632846 I

a score=262526.000000
s hg38.chr4_KI270925v1_alt    386077 122 +    555799 tggaactgtgagccaattaaacctccttcctttgtaaattacccagtcccaggtatgtctttattagcagcacgagaacagactaatacaCTTAGCTTACGTACAAATTATAAT----------------------------AATTATAA
s panTro4.chr4             193098945 122 + 193495092 tggaactgtgagccaattaaacctccttcctttgtaaattacccagtcccaggtatgtctttattagcagcatgagaacaaactaatacaCTTAGCTTATGTACaaattataat----------------------------aattataa
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113855355 122 + 115148730 tggaactgtgagccaattaaacctccttcctttataaattacccagtcccaggcatgtctttattagcagcataagaacaaactaatacaCTTAGCTTATGTACAAATTATAAT----------------------------AATTATAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183772227 145 + 184069350 tggaactgtgagtcaattaaacctccttcctttataaattacccagtcccaggtatgtctttattagcagcatgagaacaaactaatacaCTTAGCttaggtacaaattataataatttaggtacaaa-----ttaggtacaaattaCAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189165372 145 + 189454096 tggaactgtgagtcaattaaacctccttcctttataaattacccagtcccaggtatgtctttattagcagcatgagaacaaactaatacaCTTAGCttaggtacaaattataataatttaggtacaaa-----ttaggtacaaattaCAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178584304 150 + 178775436 tggaactgtgagtcaattaaacctccttcctttataaattacccagtcccaggtatgtctttattagcagcatgagaacaaactaatacacttaGCTTAGGtacaaattataataatttaggTACAAATTAATTTAGGTACAAATTACAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135518443 150 + 135778131 tggaactgtgagtcaattaaacctccttcctttataaattacccagtcccaggtatgtctttattagcagcatgagaacaaactaatacaCTTAGCTTAGGTACAAATTATAATAATTTAGGTACAAATTAATTTAGGTACAAATTACAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190617909  99 - 190850796 tggaactgtgagtcaattaaacttcctt-ctttacaaattatccagtcccacgtatgcctttatctgcagtatgagaacaaactaatGAACA--------------------------------------------------AATTACAA
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87769778   5 - 129401213 I
e canFam3.chr16             18064166 250 -  59632846 I
e ponAbe2.chr4             198181023 1258 + 198332218 M

a score=179533.000000
s hg38.chr4_KI270925v1_alt    386199 66 +    555799 TAACTTGTACCTAAGCTAAGCCTGCCTCAAACCATTCTTGAAATATGATTGTCCACTTTCCAATTC
s panTro4.chr4             193099067 66 + 193495092 taaCTTGTACCTAAGCTAAGCCTGCCTCAAACCATTCTTGAAATATGATTGTCCACTTTCCAATTC
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113855477 66 + 115148730 TAACTTGTACCTAAGCTAAGCCTGCCTCAAGCCATTCTTGAAATATGATTGTCCACTTTCCAATTC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183772372 66 + 184069350 TAACTTGTACCTAAGCTAAGCCTGCCTCAAACCATTCTTGAAATATGATTGTACACTTTCCAATTC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189165517 66 + 189454096 TAACTTGTACCTAAGCTAAGCCTGCCTCAAACCATTCTTGAAATATGATTGTACACTTTCCAATTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178584454 66 + 178775436 TAACTTGTACCTAAGCTAAGCCTGCCTCAAACCATTCTTGAAATATGATTGTACACTTTCCAATTC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135518593 66 + 135778131 TAACTTGTACCTAAGCTAAGCCTGCCTCAAACCATTCTTGAAATATGATTGTACACTTTCCAATTC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190618008 66 - 190850796 TAATTTGTGCCTGAGCTAAGTCTACCTCAAACCATTCTTGAAATATGATTGTACACTTTCCAACTC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87769783 58 - 129401213 TGATTTATA-CTAAGGTAAACCTACCGCAAACCATTCTC-AAGTATGattataaaatt------ta
i mm10.chr8                I 5 C 0
e canFam3.chr16             18064166 250 -  59632846 I
e ponAbe2.chr4             198181023 1258 + 198332218 M

a score=672419.000000
s hg38.chr4_KI270925v1_alt    386265 245 +    555799 AAAAAGTACCAAATTTCTTAGATTAATACATTTTTAAAATGCCTAAATAAGGAAGGGT-----TTTCAAACAG--AAGGCTTCCCATT--TAGG---TTTCTGCTGCTTCTTGTCCTATAGTATTTAAACACCACCATCCAGGACATCCAAGAAACGGTGGTTCcttcttaagacaaaggac---cattcatctttatctttctatagtattgcacacctctg-gcatataataagcattcaaaaaccatttgatcaacca
s panTro4.chr4             193099133 244 + 193495092 GAAAAGTACCAAGTTT-TTAGATTAATACATTTTTGAAATGCCTAAATAAGGAAGGGT-----TTTCAAACAG--AAGGCTTCCCATT--TAGG---TTTCTGCTGCTTCTTGTCCTATAGTATTTAAACACCACCATCCAGGACATCCAAGAAACGGTGGTTCcttcttaagacaaaggac---cattcatctttatctttctatagtattgcacacctctg-gcatataataagcattcaaaaaccatttgatcaacca
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113855543 245 + 115148730 AAAAAGTACCAAGTTTCTTAGATTAACACATTTTTGAAATGCCTAAATAAGGAAGGGT-----TTTCAAACAG--AAGGCTTCCCATT--TAGG---TTTCTGCTGCTTCTTGTCCTATAATATTCAAACACCACCGTCCAGGACGTCCAAGAAATGGTGGTTCCTTCTTAAGACAAACGAC---CACTCATCTTTATCTTTCTATAGTATTGCACACCTCTG-TCATATaataagcattcaaaaaccatttgatcaacca
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183772438 238 + 184069350 AAAAAGTACTAAGTTTCTTAGATTAATACATTTTTGAAATGCCTAAATAAGGTAGGGT-----TCTCAAACAG---------CCCACT--TAGG---TTTCTGCTGCTTCTTGTCCTATAATATTTAAACACCACCGTCCAGGACATCCAAGAAATGGTGGTTCcttcttgaagcaagggac---cattcatttttgtctttctatagtattgcacacctctg-gcatatcataagcattcaaaaaccatttAATCAACCC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189165583 238 + 189454096 AAAAAGTACTAAGTTTCTTAGATTAATACATTTTTGAAATGCCTAAATAAGGTAGGGT-----TCTCAAACAG---------CCCACT--TAGG---TTTCTGCTGCTTCTTGTCCTATAATATTTAAACACCACCGTCCAGGACATCCAAGAAATGGTGGTTCCTTCTTGAAGCAAGGGAC---CATTCATTTTTGTCTTTCTATAGTATTGCACACCTCTG-GCATATCATAAGCATTCAAAAACCATTTAATCAACCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178584520 245 + 178775436 AAAAAGTACTAAGTTTCTTAgattaatacatttttgaaatgccTAAATAAGGTAGGGT-----TCTCAAACAG--AAGGGTCCCCACT--TAGG---TTTCTGCTGCTTCTTGTCCTATAATATTTAAACACCACCGTCCAGGACATCCAAGAAATGGTGGTTCCTTCTTGAAGCAAGGGAC---cattcatttttgtctttctataGTATTGCACACCTCTG-GCATATCGTAAGCACTCAAAAACCATTTAATCCACCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135518659 245 + 135778131 AAAAAGTACTAAGTTTCTTAGATTAATACATTCTTGAAATGCCTAAATAAGGTAAGGT-----TCTCAAACAG--AAGGGTCCCCACT--TAGG---TTTCTGCTACTTCTTGTCCTATAATATTTAAACACCACCATCCAGGACATCCAAGAAATGGTGGTTCCTTCTTGAAGCAAGGGAC---CATTCATTTTTGTCTTTCTATAGTATTGCACACCTCTG-GCATATCGTAAGCATTCAAAAACCATTTAATCAACCC
i chlSab2.chr7             C 0 I 1056
s calJac3.chr3             190618074 244 - 190850796 AAAAAGTATTAAGTTCCTTTGATGAATGCATTTCTGAAATTCCCAAATAAGGTAGGGT-----TTTCAAACAG--AAGGCTCTCCATT--TAGG---TTTCTGCTGCTTCTTGTCCTATAATATTTTAATGCCACTGTCCAGAATATCCAGGAAACAGTGGTTTCTTCTTAAGACCAGGGAT---CATTCATCTTTGCCCTACTATAGTACTGCACACCTCTG-GCATATCGTAAGCATTC-AAAACCATTTAACCAACGA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87769841 237 - 129401213 aataattaCTAAGTTACTTTGGTTAGTACAAATTTTTAATTC---AGTCATCCCTGGG-----TGTATTATGG--AAGCCGTCCCCAA--AAGGAATTTCCTACTGCTTTTTACCACACACTGATCTGATCCAACTGTCCAGAAT---CAGGACAT---------TCCCTCAGATCTGAGACTGGTATCCATCTCTGTCTTCCTGTGGTCCTGCATACCTCTGAGTATATCACAGTCATTCAATAATCATGTAATCAGTCA
i mm10.chr8                C 0 C 0
s canFam3.chr16             18064416 253 -  59632846 AAGAAGAACAAAGTTATCTTGATTAATAAATTTTTG-AATGCCCAAATAAGACAGGGTAGCCATCCCAAACAGAGAAGCCTCTTCATTTATAGG---TTTCTGCTGCTTCTTATCTTACACTATTCAAACACCACCATCCAGAACCTTTAAGCAGCAGC-ATTTTtcctcaaagtcaaggac---cattcatctttgtcttcctatagccctacacagctctgggcatatcataggcattcaacaaccatttAATCAACTA
i canFam3.chr16            I 250 C 0
e ponAbe2.chr4             198181023 1258 + 198332218 M

a score=175477.000000
s hg38.chr4_KI270925v1_alt    386510 60 +    555799 -atcaatCAATC-TT-TTATCCTCCAATGTCAAGCTAAGTCAGTTTCTAACATGTAGAAAACA
s panTro4.chr4             193099377 60 + 193495092 -atcaatCAATC-TT-TTATCCTCCAATGTCAAGCTAAGTCAGTTTCTAACACGTAGAAAACA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113855788 60 + 115148730 -atcaatcaatc-TT-TTATCCTCCAATGTCAAGCTAAGTCAGTTTCTAACACATAGAAAACA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183772676 60 + 184069350 -ATCAACCAATC-TT-TTATCCTCCAATGTCAAGCTAAGTCAGTTTCTAACACATAGAAAACT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189165821 60 + 189454096 -ATCAACCAATC-TT-TTATCCTCCAATGTCAAGCTAAGTCAGTTTCTAACACATAGAAAACT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178584765 60 + 178775436 -ATCAACCAATC-TT-TTATCCTCCTATGTCAAGCTAAGTCAGTTTCTAACACATAGAAAACT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135519960 60 + 135778131 -atcaaTCAATC-TT-TTATCCTCCAATGTCAAGCTAAGTCAGTTTCTAACACATAGAAAACA
i chlSab2.chr7             I 1056 C 0
s calJac3.chr3             190618318 61 - 190850796 -ATCCCTCAATCTTT-TTATCCTCCAGTGTCAAGCTAAGTCAGTTTCCAACACACAGAAAACA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87770078 54 - 129401213 -ATCA------T-CT-TTATTCTCATATGTCACGCTAACCCAGGTCCAGGATGATAGGAAACA
i mm10.chr8                C 0 I 1359
s canFam3.chr16             18064669 62 -  59632846 AATCAGTCAATC-TTCTTATCCTCTTATATCAAACTAATCTTgttcctaacatataggaggca
i canFam3.chr16            C 0 C 0
e ponAbe2.chr4             198181023 1258 + 198332218 M

a score=1127404.000000
s hg38.chr4_KI270925v1_alt    386570 427 +    555799 CTAAATCAATGTGTTTGTTGAGTTAGCATGTTATGAATACATCATTCATCTAAATCCCTGAGTTTTGGAGGCAGGAAAATCAGaaggatgctggcattggagatgggcaagtctggagtcaagggagccccagccccactctgcagtatctatttggacttaaacaagtccagtaacctttctgcatttcagacacttcatctgttacaaaaggattatagctttc-----aaggtgccgcgaggggttgaaagacaatgtgtggagctcccaacaaagtgtgtggcccagggtaagcCCAAGAATCATAAAAGTCGATGTGATGATGGTGTTATTATTAAGTGCCTT-----GTACATGTTTATGCCTTGGGTGCCCACGAATACAATTAGTAATGACTATTTTCATCATTGTGGGCACCAAGAGGCTTTCTGAG-----G
s panTro4.chr4             193099437 427 + 193495092 CTAAATCAATGTGTTTGTTGAGTTAGCATGTTATGAATACATCATTCATCTAAATCCCTGAGTTTTGGAGGCAGGAAAATCAGaaggacgctggcattggagacgggcacgtctggagtcaagggagccccagccccactctgcagtatctatttggacttaaacaagtccagtaacctttctgcatttcagacacttcatctgttacaaaaggattatagctttc-----aaggtgctgcgaggggttgaaagacaatgtgtggagctcccagcaaagtgtgtggcccagggtaagcCCGAGAATCATAAAAATCGATGAGATGATGGTGTTATTTTTAAGTGCCTT-----GTACATGTTTATGCCTTGGGTGCCCACGAATACAATTAGTAATGACTATTTTCATCATTGTGGGCACCAAGAGGCTTTCTGAG-----T
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113855848 425 + 115148730 CTAAATCAATGTGTTTGTTGAGTTAGCATGTTACGAATACATCATTCATCTAAATCCCTGAGTTTTGGAGGCAGGAAAATCAGaaggacgctggcactggagacgggcaagtctggagtcaagggagccccagccccactctgcagtatctatttggactttaacaagtccagtaacctttctgcacttcagacacttcatctgttacaaaaggattataattttc-----aaggtgatgcaaaggattgaaagacaatgtgtggagctcccagcaaggtttgtggcccagggtaagcCCGAGAATCATAAAAATCAATGTGACGATGGTGTTATTATTAAGTGCCTT-----GTACATGTTTATGCCTTGGGTGCCCATG-ATAC-ATTACTAATGACTATTTTCATCATTGTGGGCACCAAGAGGCTTTCTGAG-----G
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183772736 426 + 184069350 CTAAATCAACGTGTGTGTTGAGTTAGCATGTTACGAATACATCATTCATCTAAACCCCTGAGTTTTGGAGGCAGGAAAATCAGaaggacgctggcattggagacaggaaagtctggagtccagggatccccagccccactctgcagtatctatttggacgtaaacaagtcctgtaacctttctgcacttcagacacttcatctgttacaaaaggattataactttc-----aaggtgccatgaggggttgaaaggcaacgtgttgagctcccagcaaaatttgtggcccagggtaagcCTGAGAATCATAAAAATCGATGTGATGATGGCGTT-TTATTAAGTGCCTT-----GCACATGTTTATGCCTTGGGTGCCCACAAATACAATTAGTAATGACTATTTTCATCATTGTGGGCACCAAGAGGCTTTCTGAG-----G
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189165881 426 + 189454096 CTAAATCAACGTGTGTGTTGAGTTAGCATGTTACGAATACATCATTCATCTAAACCCCTGAGTTTTGGAGGCAGGAAAATCAGaaggacgctggcattggagacaggaaagtctggagtccagggatccccagccccactctgcagtatctatttggacgtaaacaagtcctgtaacctttctgcacttcagacacttcatctgttacaaaaggattataactttc-----aaggtgccatgaggggttgaaaggcaacgtgtggagctcccagcaaaatttgtggcccagggtaagcCTGAGAATCATAAAAATCGATGTGATGATGGCGTT-TTATTAAGTGCCTT-----GCACATGTTTATGCCTTGGGTGCCCACAAATACAATTAGTAATGACTATTTTCATCATTGTGGGCACCAAGAGGCTTTCTGAG-----G
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178584825 426 + 178775436 CTAAATCAACGTGTGTGTTGAGTTAGCGTGTTACGAATACATCATTCATCTAAACCCCTGGGTTttggaggcaggaaaatcagAAGGACGCTGGCATTGGAGACAGGAAAGTCTGGAGTCCAGGGATCCCCAGCCCCACTCTGCAGTATCTATTTGGACGTAAACAAGTCCTGAAACCTTTCTGCACTTCAGACACTTCACCTGTTACAAAAGGATTATAACTTTC-----AAGGTACCGTGAGGGGTTGAAAGACAACGTGTGGAGCTCCCAGCAAAGTTTGTGGCCCAGGGTAAGCCTGAGAATCATAAAAATCGATGTGACGATGGCGTT-TTATTAAGTGCCTT-----GCACATGTTTATGCCTTGGGTGCCCACAAATACAATTAGTAATGACTATTTTCATCATTGTGGGCACCAAGAGGCTTTCTGAG-----G
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135520020 427 + 135778131 CTAAATCAACATGTGTGTTGAGTTAGCGTGTTACGAATACATCATTCATCTAAACCCCTGAGTTTTGGAGGCAGGAAAATCAGaaggacgctggcattggagacaggaaagtctggagtccagggatccccagccccactctgcagtatctgtttggacttaaacaagctctgtaacctttctacgcttcagacacttcatctgttacaaaaggattataacttgc-----aaggtgccgcgaggggttgaaagacaatgtgtggagctcccagcaaagtttgtggcccagggtaagcCTGAGAATCATAAAAATCGATGTGACGATGGTGTTATTATTAAGTTCCCT-----GCACATGTTTATGCCTTGGGTGCCCACAAATACAATTAGTAATGACTATTTTCATCATTGTGGGCACCAAGAGGCTTTCTGAG-----G
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190618379 431 - 190850796 CTGGATCAATGTGTTAGTGGAGTTAGCATGTTATGAATACATCATTCATCTAAATCCTGGAGATCTGGAGACAGGAAAATCAGaaggacactggcactggagaccagcaagtctggagtccacggacccccagccccactctgcaggatctgtttgaacttaaacaagtcaagaaacctttccacacctcagacacttcatctgttacaaaaggattgtaactttc-----aaggtgcctcaagggtttgaaagtcaatgtgtggagctaccagcaaagttggtggcccagggtaagctctagaacaataaaAATCAATGTTAAAATGCCGTTATGATTCAGTGCCTT-----GCACATGTTTATGCCTCAGGTGCCCACAAATACTGTTAGTAAGGACTA-TTTCATCATTATGGACACCAACAGGCTTTCTGAGGTTTTG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18064731 424 -  59632846 ctaaatcaatatgtttgttgaaGTAACATGTTGCAAATACATCATTCATCTAAATCTGTAAGATTgggtagcagtaaaataaaaa--acattggctttaaagacagacaggtctagagttcagggat-cccagccccactcctcagtatctacttgaactcagacaagttgagtaacctttctgaactt-agaatcttcatctgttagaaaaagataatagtgtgcaaggtaaggtactgtgaggattaaaagaacaatgtgtggagctcctgctatagtttctggcccaaag-----ATCTGTACAGTAAGAATAGAGATCACAATGGTGTTATTATTA----CCTTATTAAGCACGTGTTCATGCCTTGAGTACCCACAAATACAATTAGTAATGACTATTTTCATCATTGTGGGCATCAGGAGTATTTCTGAG-----G
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87770132 1359 - 129401213 I
e ponAbe2.chr4             198181023 1258 + 198332218 M

a score=695943.000000
s hg38.chr4_KI270925v1_alt    386997 250 +    555799 TTTTTTTCCAAGCAGAACAGAACCAAGAACTAATTATTATACTCCAAACCCTTATTCTTAGTCTCAAGACTAAGCAGCACATGCCATGAGAGTTAGAGTCCTCCCTCCAGCTAGGAGCCTCTGCTAGGAAGCAGGCCAGTGAGCTATCCATAAAAGCACAACCTCTGCTAGAGAACAGTAAGCTGCAGACAGGTTTTATATGTGGCTATTCTTCTCAGACCAG--AAGAGACATTCTGTTGGCATTTTCATC
s panTro4.chr4             193099864 250 + 193495092 TTTTTTTCCAAGCAGAACAGAACCAAGAACTAATTATTATACTCCAAACCCTTATTCTTAGTCTCAAGACTAAGCAGCACACGCCATGAGAGTTAGAGTCCTCCCTCTAGCTAGGAGCCTCTGCTAGGAAGCAAGCCAGTGAGCTATCCATAAAAGCACAACCTCTGCTAGAGAACAGTAAGCTGCAGACAGGTTTTATATGTGGCTATTCTTCTCAGACCAG--AAGAGACATTCTGTTGGCATTTTCATC
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113856273 249 + 115148730 TTTTTTTCCAAGCAGAGCAGAACCAAGAACTAATTATTATACTCCAAACACTTATTCTTAGTCTCAAGACTAAGCAGCACACGCCATGAGAGTTAGAGTCCTCCCTCTAGCTAGGAGCCTCTGCTAGG-AGCAAGCCGGTGAGATATGCATAAAAGCACAACCTCTGCTAGAGATCAGTAAGCTGCAGACAGGTTCTATACGTGGCTATTCTTCTCAGACCAG--AAGAGACATTCTGTTGGCATTTTCATC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183773162 249 + 184069350 TTTTTTCCCAAGCAGAGCAGAACCAAGAACTAATTATTATACTCCAAACACTTATTCTTAGTCTCAAGACTAAGCAGCACATGCCATGAGAGTCAGATTCCTCCCTCTAGCAAGGAGCCTCTGCTAGC-AGCAAGCCAGTGAGCTATGCATAAAAACACAACCTCTGCCAGAGAACAGTAAGCTGCAGACAGGTTTTATATGTGACTATTCTTCTCAGACCAG--AAGAAACATTTTGTTGGCATTTTCAGC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189166307 249 + 189454096 TTTTTTCCCAAGCAGAGCAGAACCAAGAACTAATTATTATACTCCAAACACTTATTCTTAGTCTCAAGACTAAGCAGCACATGCCATGAGAGTCAGATTCCTCCCTCTAGCAAGGAGCCTCTGCTAGC-AGCAAGCCAGTGAGCTATGCATAAAAACACAACCTCTGCCAGAGAACAGTAAGCTGCAGACAGGTTTTATATGTGACTATTCTTCTCAGACCAG--AAGAAACATTTTGTTGGCATTTTCAGC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178585251 249 + 178775436 TTTTTTCCCAAGCAGAGCAGAACCAAGAACTAATTATTATACTCCAAACACTTATTCTTAGTCTCAAGACTAAGCAGCACATGCCATGAGAGTCAGAGTCCTCCCTCTAGCAAGGAGCCTCTGCTAGC-AGCAAGCCAGTGAGCTATGCATAAAAGCACAACCTCTGCCAGAGAACAGTAAGCTGCAGACAGGTTTTATACGTCACTATTCTTCTCAGACCAG--AAGAAACATTTTGTTGGCATTTTCAGC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135520447 249 + 135778131 TTTTTTCCCAAGCAGAGCAGAACCAAGAACTAATTATTATACTCCAAACACTTATTCTTAGTCTCAAGACTAAGCAGCACATGCCATGAGAGTCAGAGTCCTCCCTCTAGCTAGGAGCCTCTGGTAGC-AGCAAGCCAGTGAGCTATGCGTAAAAGCACAACCTCTGCCAGAGAACAGTAAGCTGCAGACAGGTTTTATACGTGACTATTCTTCTCAGACCAG--AAGAAACATTTTGTTGGCATTTTCAGC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190618810 238 - 190850796 TTTTTTTACAAGCACAGCAGAACCAAAAACTAGTTATCATCCTCCAAACA------CTTAGTCTGAAGACTGAGCAGCACATGCTACGAGAGTTAGAG-CCGTCCACCAGCCAGGAGCCTCCACTAGG-AGCAAGCCCATGAGCTCTGCATAAAAGCACAACCCCTGCCAGGGAACAAAAAGCTGCA-ACAGGTTTTGTATGTGGCTG---TTCTCAGACCAG--AAGAGACATTCTGTTGGCATTttcttt
i calJac3.chr3             C 0 I 5464
s mm10.chr8                 87771491 242 - 129401213 TTTTTCCATAAGTGAAGCAATACCAAGAACTAATTCACGTACCTGAAACACCTATTTTCA-TCTCAAAATGAGGCAGTACAAGGCTGGAGAGTCTGAGCCAT--CTCGGGTTATGAGCCTCTGATAGA-AACCAACTGATTGGATCCGCACAAAAGTGAA------GCCAGAGAATGACACACTGCAGATAGGTTTTACAAAAAGCTGCTGTCTCCAGACCAGAAAAAAAAAATTCTGTTAGCATTCTCAAA
i mm10.chr8                I 1359 C 0
s canFam3.chr16             18065155 239 -  59632846 -TTTTTCCCAAGGAGAGCAG-----GGAACAAATCATAGTACTCCAAACACACAGCCC--ATCTCAGTACTGAGCAGAACAAGACATGAGCATCAGAG--CTCTCTCTGGAGATGTGCCTCTGCTATA-AGCAAACTGATCGAACACGCATACAGTGAAGTCTTCTAACAGAGAACCATAAATTGTAAACAGTTTTTACAGAAGGCTATTTTTCTCAGACCAA--AAGTGTTATTCTGTTGGCATTTTCAAA
i canFam3.chr16            C 0 C 0
e ponAbe2.chr4             198181023 1258 + 198332218 M

a score=138239.000000
s hg38.chr4_KI270925v1_alt    387247 56 +    555799 TAACAGTATAAAGTTACAATACAAATATAAGGGTAGTTGTTATTGGATAACACTTT-
s panTro4.chr4             193100114 56 + 193495092 TGACAGTATAAAGTTACAATACAAATATAAGGGTAGTTGTTATTGGATAACACTTC-
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113856522 56 + 115148730 TGACAGTATAAAGTTACAAAACAAATATAAGGGTAGTTGTTATCGGATAACATTTT-
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183773411 56 + 184069350 TGAGAGTATAAAGTGACAATACAAATATTGGGGTAGTTGTTATCAGATAACATTTT-
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189166556 56 + 189454096 TGAGAGTATAAAGTGACAATACAAATATTGGGGTAGTTGTTATCAGATAACATTTT-
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178585500 56 + 178775436 TGAGAGTATAAAGTGACAATACAAATATTGGGGTAGTTGTTATCAGATAACATTTT-
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135520696 56 + 135778131 TGAGAGTATAAAGTGACAATACAAATATTGGGGTAGTTGTTATCAGATAACATTTT-
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190624512 53 - 190850796 TGACAGTCTAAAATTATGATACAAATATAGA---AGTTGTTATGGGATAACATTTT-
i calJac3.chr3             I 5464 I 310
s mm10.chr8                 87771733 56 - 129401213 TGTCAATGTGAAAGTGCAAAATGAAAGCAGGGGTTACCGTGGCAAGCTATCATTTT-
i mm10.chr8                C 0 I 1
s canFam3.chr16             18065394 57 -  59632846 TGACCATGTGCAATTACAATATAAAAACAGGGGTTGCTATTATGAGATACCATCTTT
i canFam3.chr16            C 0 C 0
e ponAbe2.chr4             198181023 1258 + 198332218 M

a score=-1073.000000
s hg38.chr4_KI270925v1_alt    387303 2 +    555799 -AA
s panTro4.chr4             193100170 2 + 193495092 -AA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113856578 2 + 115148730 -AA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183773467 2 + 184069350 -AA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189166612 2 + 189454096 -AA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178585556 2 + 178775436 -AA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135520752 2 + 135778131 -AA
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87771790 1 - 129401213 -A-
i mm10.chr8                I 1 C 0
s canFam3.chr16             18065451 2 -  59632846 TA-
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190624565 310 - 190850796 I
e ponAbe2.chr4             198181023 1258 + 198332218 M

a score=499804.000000
s hg38.chr4_KI270925v1_alt    387305 173 +    555799 CAGCATTTTCTTTTTAAATCTCTGTATAGAGAGGATTTCTATTAACATATA--Acaggccaaaaacctgagcatcatcctgagcatcattctttctctcacg-ccctgcctccaatccctcagaaaatg-tgattgtcctactttcaagatctaccca-aatctggc---ttttctcacca
s panTro4.chr4             193100172 173 + 193495092 CAGCATTTTCTTTTTAAATCTCTGTATAGAGAGGATTTCTATTAATATATA--Acaggccaaaaacctgagcatcatcctgagcatcattctttctctcacg-ccctgcctccaatccctcagaaaata-tgattgtcttactttcaagatctaccca-aatctggc---ttttctcacca
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113856580 173 + 115148730 CAGCATTTTCTTTTTAAATCTCTATATAGAGAGGATTTCTATTAACATAAA--Acaggccaaaaacctgagcatcatcctgagcatcattctttctctcacg-ccctgcctccaatccctcagaaaatg-taattgtcctactttcaagatctaccca-aatctggc---ttgtctcacca
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183773469 175 + 184069350 CAGCATTTTCTTTCTAAATCTCTGTATAGAGAGGATTTCTATTAACATACAACAcaggccaaaaacctaagcatcatcctaagcatcattcttcctctcaca-ccctgcctccaacccctcagaaaatg-tggttgccctacttccaacacctaccca-aatctggc---ttttctcacca
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189166614 175 + 189454096 CAGCATTTTCTTTCTAAATCTCTGTATAGAGAGGATTTCTATTAACATACAACAcaggccaaaaacctaagcatcatcctaagcatcattcttcctctcaca-ccctgcctccaacccctcagaaaatg-tggttgccctacttccaacacctaccca-aatctggc---ttttctcacca
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178585558 175 + 178775436 cagcattttctttctaaatctctGTATAGAGAGGATTTCTATTAACATACAACACAGGCCAAAAACCTGAGCATCATCCTAAGCATCATTCTTCCTCTCACA-CCCTGCCTCCAACCCCTCAGAAAATG-TGGTTGACCTACTTCCAACATCTACCCA-AATCTGGC---TTTTCTCACCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135520754 175 + 135778131 CAGCATTTTCTTTCTAAATCTCTGTACAGAGAGGATTTCTATTAACATACAACAcaggccaaaaacctgagcatcatcctaagcatcattcttcctctcaca-ccctgcctccaacccctcagaaaatg-tggtttccctacttccaacatctaccca-aatctggc---ttttctcacca
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190624875 175 - 190850796 cGGCATTTTCTTTTTAAATCTCTGTATATAGAGGATTTCTATTAACATACAACAcaggccagacacccgagcatcatgctgaccctcattctttctcatacacccctatatccaacccctcagaaaatg-tgg-tgtcatactttcacgatctaccca-aatctgtc---ttttctttcca
i calJac3.chr3             I 310 C 0
s mm10.chr8                 87771791 177 - 129401213 CATCAGTTTGTCTTTTTATGCCTGTGTATAGGAGATTTCTCGTAACCTATGActcaagccaaaagcctaagcatcattctttactctattct--ccttcaca-atctacacccaatccctcataaaattctgctggccctatttcaaagacttactgg-tatctggctttttttctaacca
i mm10.chr8                C 0 C 0
s canFam3.chr16             18065453 171 -  59632846 ---CATTT--TTTTTAAATTTCTGTATATTAAGAATTTCTATTAATGCATGActcaggccaaaaactttagcatcatccttaactcta-actttctctcaca-ttccacatccaatcccttggaaaattctgctggccctactttcaaaatacagccaggatctgac---tttcctcatca
i canFam3.chr16            C 0 C 0
e ponAbe2.chr4             198181023 1258 + 198332218 M

a score=1871237.000000
s hg38.chr4_KI270925v1_alt    387478 615 +    555799  
s panTro4.chr4             193100345 614 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198182286 600 + 198332218  
i ponAbe2.chr4             M 1258 C 0
s nomLeu3.chr7b            113856753 613 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183773644 615 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189166789 615 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178585733 615 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135520929 615 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190625050 590 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87771968 655 - 129401213  
i mm10.chr8                C 0 I 295
s canFam3.chr16             18065624 560 -  59632846  
i canFam3.chr16            C 0 C 0

a score=414844.000000
s hg38.chr4_KI270925v1_alt    388093 146 +    555799 tccctgtgaaaaacaagcaccttgaggatggagatctttgtctcttttgttcactgatttg-ctgaagcacagaaaacttatgagcagtgcttggctcatagcaggtactcaggaaatactgaatcagtgaatATAAACTAAGAAGA
s panTro4.chr4             193100959 146 + 193495092 tccctgtgaaaaacaagcaccttgaggatggagatctttgtctcttttgttcactgatttg-ctgaagcacagaaaacttatgagcagtgcttggctcatagcaggtactcaggaaatactgaatcagtgaatATAAACTAAGAAGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198182886 146 + 198332218 tccctgtgaaaaacaagcaccttgaggatggagatctttgtctcttttgttcactgatttg-ctgaagcacagaaaacttatgagcagtgcttgcctcatagcaggtactcaggaaatactgggtcagtgaatATAAACTAAGAAGA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113857366 146 + 115148730 tccctgtttaaaacaagcaccttgaggatggagatctctgtctcttttgtttactgatttg-ctgaagcacagaaaacttatgaacagtgcttggctcatagcaggtactcaggaaatactgaatcagtgaatATAAACTAAGAAGA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183774259 146 + 184069350 tccctgtgaaaaacaagcaccttgaggatggagatctttgtctcttttgttcgctgagttg-cccaagcatagaaaacttatgagcagctattggctcatggcaggtactcaggaaatgctgaatcagcgaatATAAACTGAGAAGA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189167404 146 + 189454096 tccctgtgaaaaacaagcaccttgaggatggagatctttgtctcttttgttcgctgagttg-cccaagcatagaaaacttatgagcagctattggctcatggcaggtactcaggaaatgctgaatcagcgaatATAAACTGAGAAGA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178586348 146 + 178775436 TCCCTGTGAAAAACAAGCACCTTGAGGTTGGagatctttgtctcttttgtttgCTGATTTG-CCCAAGCATAGAAAACTTATGAGCAGCGATTGGCTCATGGCAGGTACTCAGGAAATGCTGAATCAGCGAATATAAACTGAGAAGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135521544 145 + 135778131 tccctgtgaaaaacaagcaccttgaggatggagatctttgtctcttttgttcgctgatttg-cccaagcacagaaaacttatgagcagcc-ttggctcacggcaggtactcaggaaatgctgaatcagcaaatATAAACTAAGAAGA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190625640 147 - 190850796 tccctgttaaaaatgggtgccttgaggacagagatcgttgtctctttaattcactgatttaccccaagcacagaaaacttatgagcagtccttggctcccagcaggtactcagtaaatactGAATCGGCGAACATAAACCAAGAAGA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18066184  54 -  59632846 -------------------------------------------------TCTACTTCTTTA--------------------------------------------GTGTTCAGTAAATGCATAATTAATGAATATAAATTAAGAAGA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87772623 295 - 129401213 I

a score=246992.000000
s hg38.chr4_KI270925v1_alt    388239  71 +    555799 CAATGATGCCTTACCATG--AGTGGAAA--------------GATGCCC---------------------ATCATGTGGGAAGCAAGCAAATCTTTATGTGTGCAAAA
s panTro4.chr4             193101105  71 + 193495092 CAATGATGCCTTACCATG--AGTGGAAA--------------GATGCCC---------------------ATCATGTGGGAAGCAAGCAAATCTTTACGTGTGCAAAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198183032  71 + 198332218 CAATGATGCCTTACCATG--AATGGAAA--------------GATGCCC---------------------ATCATGTGGGAAGCAAGGAAATCTTTGTGTGTGCAAAA
i ponAbe2.chr4             C 0 I 1
s nomLeu3.chr7b            113857512  71 + 115148730 CAATGATGCCTTACCGTG--AGTGGAAA--------------GATGCTC---------------------ATCATGTGGGAAGCAAGGAAATCTTTATGTGTGCAAAA
i nomLeu3.chr7b            C 0 I 1
s rheMac3.chr5             183774405  71 + 184069350 TAATGATGCCTTACCATG--AGTGGAAA--------------GATGCCC---------------------ATCACGTGGAAAGCAAGCAAACCTTTATGTGTGCAAAA
i rheMac3.chr5             C 0 I 1
s macFas5.chr5             189167550  71 + 189454096 TAATGATGCCTTACCATG--AGTGGAAA--------------GATGCCC---------------------ATCACGTGGAAAGCAAGCAAACCTTTATGTGTGCAAAA
i macFas5.chr5             C 0 I 1
s papAnu2.chr5             178586494  71 + 178775436 TAATGATGCCTTACCATG--AGTGGAAA--------------GATGCCC---------------------ATCACGTGGAAAGCAAGCAAACCTTTATGTGTGCAAAA
i papAnu2.chr5             C 0 I 1
s chlSab2.chr7             135521689  71 + 135778131 TAATGATGCCTGACCATT--AGTGGAAA--------------GATGCCC---------------------ATCACGTGGAAAGCAAGCAAACCTTTATGTGTGCAAAA
i chlSab2.chr7             C 0 I 1
s calJac3.chr3             190625787  71 - 190850796 TAACGATGCTTTACCATC--AGTAGAAA--------------GGTTCTC---------------------ACCATGTGGAGACCAAGCAAATCTATATGTGTGCAGAA
i calJac3.chr3             C 0 I 25
s mm10.chr8                 87772918 108 - 129401213 ccatgatgtttcttcatagcaatagaaatcctaaAATACCCTGATTCTCTCAGCTAAAAGCAAGTAAATGCTTGTATAGAAAGCAAGGGAATCTTTATATATGCAAAA
i mm10.chr8                I 295 I 1
s canFam3.chr16             18066238  71 -  59632846 TTAAAATGTCCCATAATT--AGTGGCAA--------------TATGCCT---------------------TTTATGTAGGAAGCAAGCAAACCTTTGCATGTGCAAAA
i canFam3.chr16            C 0 I 1

a score=283697.000000
s hg38.chr4_KI270925v1_alt    388310 101 +    555799 TCAGGGCTTT---------------GCCACCT-GTTTAGAGCAACCATTTCTTCCTCTGCTTAGAGGCATCAACAGGATATGAGCAGGTGTTTAGTAGAGAATATAATCAGTTTAGT
s panTro4.chr4             193101176 101 + 193495092 TCAGGGCTTT---------------GCCACCT-GTTTAGAGCAACCATTTCTTCCTCTGCTTAGAGGCATCAACAGGATATGAGCAGGTGTTTAGTAGAGAATATAATCAGTTTAGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198183104 101 + 198332218 GCAGGGCTTC---------------GCCACCT-GTTTAGGGCAACCATTTCTGCCTCTGCTTAGAGGCATCAACAGGATATGAGCAGGTGTTTAGTAGAGAATATAATCAGTTTAGT
i ponAbe2.chr4             I 1 C 0
s nomLeu3.chr7b            113857584 101 + 115148730 CCAGGGCTTC---------------GCCACCT-GTTTAGAGCAACCATTTCTGCCTCTGCTTAGAGGCATCTACAGGATATGAGCAAGTGTTTAGTAGAGAATATAATCAGTTTAGT
i nomLeu3.chr7b            I 1 C 0
s rheMac3.chr5             183774477 116 + 184069350 TTAGGGCTTTTTAGAGCACATAAAAAACACCT-GTTTAGAGCAATCATTTCTGCCTCTGCTTAGAGGCATCAACAGGATATGAGCAGGTGCTTAGAAGAGAATATAATCAGTTTAGT
i rheMac3.chr5             I 1 C 0
s macFas5.chr5             189167622 116 + 189454096 TTAGGGCTTTTTAGAGCACATAAAAAACACCT-GTTTAGAGCAACCATTTCTGCCTCTGCTTAGAGGCATCAACAGGATATGAGCAGGTGCTTAGAAGAGAATATAATCAGTTTAGT
i macFas5.chr5             I 1 C 0
s papAnu2.chr5             178586566 116 + 178775436 TTAGGGCTTTTTAGAGCACATAAAAAACACCT-GTTTAGAGCAACCATTTCTGCCTCTGCTTAGAGGCATCAACAGGATATGAGCAGGTGCTTAGAAGAGAATATAATCAGTTTAGT
i papAnu2.chr5             I 1 C 0
s chlSab2.chr7             135521761 101 + 135778131 TTAGGGCTTC---------------ATCACTT-GTTTAGAGCAACCATTTCTGCCTCTGCTTAGAGGCATCAACAGGATATGAGCAGGTGTTTAGAAGAGAATATAATCAGTTTAGT
i chlSab2.chr7             I 1 C 0
s mm10.chr8                 87773027 102 - 129401213 CTGGGTTTTT---------------GCCAACTGGTTGAAAACCACCACCCCAGTCTCCCCTTATGAGCATCAAGAAGATTCAAGCAATGATTAAGCATAGACTATAATCATCTGGGT
i mm10.chr8                I 1 I 2
s canFam3.chr16             18066310  92 -  59632846 TCAAGGTCTT---------------TCTACTTGGTTTAGAGCCACCG----------TGCCTGGTGGCATCAACAGGACATAAACTAATATTTAGTAGAGGGTATAAACAGTTCAGT
i canFam3.chr16            I 1 C 0
e calJac3.chr3             190625858  25 - 190850796 I

a score=643961.000000
s hg38.chr4_KI270925v1_alt    388411 189 +    555799 TTTTCAGAGCAGATGATACAAAAATATTCTTCTCACACA-GATTATGAGATATTGAGCCTAACGGTTTTGAAATTTAGGAAAAGTTAATATGAATGAGAGAAAAATAACCAAAAAGAAATAGCAATTATTCCTTACTAATGTTATTTTTCT-GTCTGCAAAGTAAACATAGTAAAAGAAATTTTTCACTTT
s panTro4.chr4             193101277 189 + 193495092 TTTTCAGAGCAGATGATACAAAAATATTCTCCTCACACA-GATTATGAGATATTGAGCCTGACGGTTTTGAAATTTAGGAAAAGTTAATATGAATGAGAGAAAAATAATCAAAAAGAAATAGCAATTATTCCTTACTAATGTTATTTTTCT-GCCTGCAAAGTAAACATAGTAAAAGAAATTTTTCACTTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198183205 188 + 198332218 TTTTCAGAGCAGA-GATACAAAAATATTCTCCTTACACA-GATTATGAGATATTGAGCATAACGGTTTTGAAATTTAGGAAAAGTTAATATGAATGAGAGAAAAATAACTAAAAAGAAATAGCAATTATTCCTTACTAATGTTATTTTTCT-GTCTGCAAAACAAACATAGTAAAAGAAATTTTTCACTTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113857685 188 + 115148730 TTTTCAGAGCAGATGATAC-AAAATATTCTCCTTACACA-GATAATGAGATATTGAGCCTAACGGTTTTGAAACTTAGGAAAAGTTAATATGAATGAGAGAAAAATAACCAAAAAGAAATAGCAATTTTCCCTTTCTAATGTTATTTTTCT-GTGTGCAAAATAAACATAGTAAAAGAAATTTTTCATTTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183774593 189 + 184069350 TTTTCAGAGGAGATGATACAAAAATATTCTCCTCACACA-GATTATGAGATATTGAGCCTAACGGTTTTGAAATTTAGGAAAAGTTAATGTGAATGAGAGAAAAATAACCAAAAAGAAATAGCAATTATTCCTTACTAATGTTATTTTTCT-GTCTGCAAAATAAACATAGTAAAAGAAAGTTTTCACTTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189167738 189 + 189454096 TTTTCAGAGGAGATGATACAAAAATATTCTCCTCACACA-GATTATGAGATATTGAGCCTAACGGTTTTGAAATTTAGGAAAAGTTAATGTGAATGAGAGAAAAATAACCAAAAAGAAATAGCAATTATTCCTTACTAATGTTATTTTTCT-GTCTGCAAAATAAACATAGTAAAAGAAAGTTTTCACTTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178586682 189 + 178775436 TTTTCAGAGGAGATGATACAAAAATATTCTCCTCACACA-GATTATGAGATATTGAGCCTAACGGTTTTGAAATTTAGGAAAAGTTAAtgtgaatgagagaaaaataaccaGAAAGAAATAGCAATTATTCCTTACtaatgttatttttct-gtctGCAAAATAAACATAGTAAAAGAAAGTTTTCACTTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135521862 185 + 135778131 TTTTCAGAGGAGATGATACAAAAATATTCTCCTCACACA-GATTATGAGATATTGAGCCTAACGGTTTTGAAATTTAGGAAAAGTTAATGTGAATAAGAGAAAAATAACCAAAAAGAAATAGCAATTATTCCTTACTAATG----TTTTCT-GTCTGCAAAATAAACATAGTAAAAGAAAGTTTTCACTTT
i chlSab2.chr7             C 0 I 577
s calJac3.chr3             190625883 186 - 190850796 TTTTCATAGCAGATGATACAAAAATATTCTGCTCACACACCATTATGAGATATTGAGCTTAACGGTTTTGAAATTTAGGAAAAGTTAACATGAAGAAGAGAACAATAACCAAAAATAAATAGCAGTTATCTCTTACTAATGTTATTTTTCC-ATCTACAAAATAAACATACAAAAAAA----TTTCCCTTT
i calJac3.chr3             I 25 C 0
s mm10.chr8                 87773131 163 - 129401213 ATCTCATAGCAGAAGATCCAAAGAAAATCTCCTCATGTA-CATAATGAG-----GGTCCTAAGTGTTCAGGAATTTAAACAAAATTAAT----AGAAGGTAAAAAAAATTTAAAA-----ATCAATTAGTCAGTATTAATATTATTTTCCC-AAATACAAAATAATTTC------------TTTTCATTTT
i mm10.chr8                I 2 C 0
s canFam3.chr16             18066402 180 -  59632846 -TCTCAGAACTTATAATACACGAAGATTCTACCCACATG-GATTATGATATGTTGAGCCTAAGAGTTTGGTGATTTAGACAAAATCAACATAAAGTACACTGAAAAAATTCAAAT----TAGCAATTAGTACCTACTA---TCATTTTTCTCATCTATAAAACAAACCTAGTAAAAGAA--TTTTTCTTTT
i canFam3.chr16            C 0 C 0

a score=55765.000000
s hg38.chr4_KI270925v1_alt    388600 24 +    555799 AAGTTATGAAAGTTGACACTATTA---
s panTro4.chr4             193101466 24 + 193495092 AAGTTATGAAAGTTGACACTATTA---
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198183393 24 + 198332218 AAGTTATGAAAGTCGATACTATTA---
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113857873 24 + 115148730 AAGTTATGAAAGTCGATACTATTA---
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183774782 22 + 184069350 --GTTATGAAAGTTTATACTATTA---
i rheMac3.chr5             C 0 I 438
s macFas5.chr5             189167927 22 + 189454096 --GTTATGAAAGTTTATACTATTA---
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178586871 22 + 178775436 --GTTATGAAAGTTTATACTATTa---
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190626069 24 - 190850796 AAGTTATGAAAGTTGACACTATTA---
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87773294 18 - 129401213 -TGTTATTGAAGCTGTGAC--------
i mm10.chr8                C 0 C 0
s canFam3.chr16             18066582 27 -  59632846 AAGTTATGAAAGTTATTATTACTTTTG
i canFam3.chr16            C 0 C 0
e chlSab2.chr7             135522047 577 + 135778131 I

a score=3893.000000
s hg38.chr4_KI270925v1_alt    388624 2 +    555799 TC
s panTro4.chr4             193101490 2 + 193495092 TC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198183417 2 + 198332218 TC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113857897 2 + 115148730 TC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189167949 2 + 189454096 Cc
i macFas5.chr5             C 0 I 553
s papAnu2.chr5             178586893 2 + 178775436 cc
i papAnu2.chr5             C 0 I 553
s calJac3.chr3             190626093 2 - 190850796 TC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18066609 2 -  59632846 TC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87773312 0 - 129401213 C
e chlSab2.chr7             135522047 577 + 135778131 I
e rheMac3.chr5             183774804 438 + 184069350 I

a score=714540.000000
s hg38.chr4_KI270925v1_alt    388626 217 +    555799 TATAATTTTTACATGTG----------------------------------------CCTCTATTATATGT-CCTCTA-GCCTTTCACTAAACTAGACCCATTGTAATCTGCTATTATTTGTACTTATTTTACCTATA--ATTTGGAAATAAGGTGATTAGCATATTTTTCCTTAAA-TTTTATTCCTGGTCTCAAAGA-CTTTTTCGACATAGTCATTAACTCTAAGACTAAACAAAAGTGAATAGCTAAAGAAAAGGTTAT
s panTro4.chr4             193101492 217 + 193495092 TATAATTTTTACATGTG----------------------------------------CTTCTATTATATGT-CCTCTA-GCCTTTCACTAAACTAGACCCATTGTAATCTGCTATTATTTGTACTTATTTGACCTATA--ATTTGGAAATAAGGTGATTAGCATACTTTTCCTTAAA-TTTTATTCCTGGTCTCAAAGA-CTTTTTCGACATAGTCATTAACTCTAAGACTAAATAAAAGAGAATAGCTAAAGAAAAGGTTAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198183419 217 + 198332218 TGTAATTTTTACATATG----------------------------------------CCTCTATTATATGT-CCTCTA-GCCTTTCACTAAACTAGAGCTATTATAATCTGCTATTATTTGTACTTATTTTACCTGTA--ATTTGGAAATAAGGTGATTAGCATATTTTTCCTTAAA-TTTTATTCTTGATCTCAAAGT-CTTTTTCCACATAGTCATTAACTCTAAGATTAAACAAAACAAAATAGCTAAAGAAAAGGTCAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113857899 217 + 115148730 TATAATTTTTACATGTG----------------------------------------CCTCTATTATATGT-CCTCTA-GCCTTTCACTAAACTAGAACTATTGTAATCTGCTATTATTTGTACTTATTTTACCTATA--ATTTGGAAATAAGGTGATTGGCATATTTTTCCTTAAA-TTTTATTCCTGGTCTCAAAGC-CTTTTTCGACATAGCCATTAACTCTAAGTTTAAACAGAAGAGAATAGCTAAAGAAAAGGTCAT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183775242 217 + 184069350 tatAATTTTTACATGTC----------------------------------------CCTCTATTATATGT-CCTCTA-GCCAGTCACTAAACTAGACCTATTGTAATCTGCTATTATTTGTACTTATTTTACCTATA--ATTTAGAAATAAGGTGATTAGCATATTTTTCCTTAAA-TTTTATTCCTGGTCTCAAAGC-CTTTTTTGACATAGTCATTAACTGTAAGATTAAACAAAAGATAAGAGCTAAAGAAAAGCTTAt
i rheMac3.chr5             I 438 C 0
s macFas5.chr5             189168504 217 + 189454096 tatAATTTTTACATGTC----------------------------------------CCTCTATTATATGT-CCTCTA-GCCAGTCACTAAACTAGACCTATTGTAATCTGCTATTATTTGTACTTATTTTACCTATA--ATTTAGAAATAAGGTGATTAGCATATTTTTCCTTAAA-TTTTATTCCTGGTCTCAAAGC-CTTTTTTGACATAGTCATTAACTGTAAGATTAAACAAAAGATAAGAGCTAAAGAAAAGCTTAt
i macFas5.chr5             I 553 C 0
s papAnu2.chr5             178587448 217 + 178775436 tataatttttacatgtC----------------------------------------CCTCTATTATATGT-CCTCTA-GCCAGTCACTAAACTAGACCTATTGTAATCTGCTATTATTTGTACTTATTTTACCTATA--ATTTGGAAATAAGGTGATTAGcatatttttccttaaa-ttttattCCTGGTCTCAAAGC-CTTTTTTGACATAGTCATTAACTGTAAGATTAAACAAAAGATAAGAGCTAAAGAAAAGCTTAT
i papAnu2.chr5             I 553 C 0
s chlSab2.chr7             135522624 217 + 135778131 tatAATTTTTACATGTC----------------------------------------CCTCTATTATATGT-CCTCTA-GCCAGTCACTAAACTAGACCTATTGTAATCTGCTATTATTTGTACTTATTTTACCTATA--ATTTGGAAATAAGGTGATTAGCATATTTTTCCTTAAA-TTTTATTCCTGGTCTCAAAGC-CTTTTTTGACATAGTCATTAACTGTAACATTAAACAAAAGATAAGAGCTAAAGAAAAGCTTAt
i chlSab2.chr7             I 577 C 0
s calJac3.chr3             190626095 259 - 190850796 TATATTTTTTATATGTCTCCCTATTTCTTATAAAGGAACATATACATTTTGTAGGTTCCTCTGTTATATGTCCCTCTA-GTCTTTCACTAAACTAGACCTGTTGTAATCTGCTATTATTTCTACTTATTTGACCTATA--ATTCTGGAATAAGGTGGTTAACatatttttttaaaaatttttattCCTGGTTGCAAAGC-CTTTTTCGACACAGTCCTTAACTCTAAGATTAAACAAAAGAGACTAGCTGAGAGAAAGGTTAT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87773312 198 - 129401213 ----------ACATGTT-----------------------------------------------TTTGTAC-CCTCTATGTCTGTCATTAAACTGTGTTTG-GGTAA--TGTTATCATTCCCATTTATTCTAACTGTGT-ATCTGGGAATAAAGT-ACTAATATATTTCTGCTTAAA-TTTT-CCCTTAATCTAAAAGCTCTTCTTCTAGATACCCACATACTCAAAGATTAAACAAAAGGAGGCAGCTAAAAGCAAGGTTAT
i mm10.chr8                C 0 I 5
s canFam3.chr16             18066611 202 -  59632846 TATAATTCTCATA--------------------------------------------CC-------------CTATTT-GTCTTTCACTAAAATAGATACCTTATCATCTGTCGTTATTTCTATTATTCCTACCTATATATTTTGGGGATAAAATGTTTAACAT-TGTTTCTTTGAA-TTTCATCCCTTGTCTCAAAGC-TTCTCTCTAGATAATTGTGAATTCCAAGATTAAAGAATAAGGAATAGCTAAATAAAATGTTAT
i canFam3.chr16            C 0 C 0

a score=349001.000000
s hg38.chr4_KI270925v1_alt    388843 339 +    555799 ACTgggctggaaagctacaggttgaaggccagt-ttggcccacattttttt-------tttttttataaagatgattgaaacagccatgcccattcacctgcctcttgtccatggctgcttt-----ctaac-----tggcagagttgagtatttgtgacagagaccatatggccacagagccaaaaatatttactctctgtccctttacagaaaacgtttgctgaccTT-TATGAGGCAGTCGATCTT-CCT-CCTACTGGCTTTTCACATGTTGCTGTGT--GTCTGTGTGAGGTCATTTATTGAGCACCAAATGTGCCAAATATGCATCATGACTATGCGTCTAGCACAAGACGGTGAC
s panTro4.chr4             193101709 340 + 193495092 ACTAggctggaaagctacaggttgaaggccagg-ttggcccacattttttt-------ttataa-ataaagatgtttgaaacagccatgcccattcacctgcctcttgtccatggctgcttt-----ctaac-----tggcagagtttagtatttgtgacagagaccatatggccacagagccaaaaatatttactctctgtccctttacagaaaacgtttgctgaccTTGTATGAGGTAGTCGATCTT-CCTTCCTACTGGCTTTTCACATGTTGCTGTGT--GTCTATGTGAGGTCATTTATTGAGCACCAAATGTGCCAAATATACATCATGACTATGAGTCTAGCACAAGACGGTGAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198183636 340 + 198332218 ACTAggctggaaagctacaggttgaaggccagg-ttggcccacattttttt-------taataa-ataaagatgattgaaacagccatgcccgttcacctgcctcttgtccatggctgcttt-----ctaac-----tggcagagttgagtatttgtgacagagaccatatggccacagagccaaaaatatttactctctgtccctttacagaaaacatttgctgaccTTGTGTGAGGCAGTCTATCTT-CCTTCCTGTTGGCTTTTCACATGTTGCTGTGT--GTCTGCGTGAGGTCATTTATTGAGCACCAAATATGCCAAATACGCATCATGACTATGAGTCTAGCATAAGAGGGTGAC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113858116 335 + 115148730 ACTAggctggaaagctacaggttgaaggccagg-ttggcccacatttttt----------ataa-ataaagatgattgaaacagccatgcctgttcacctgcctcttgtccatggctgcttt-----ctaac-----tggcagagttgagtatttgtgacagagaccatgtggccacagagccaaaaata--tactctctgtccctttacagaaaacgtttgctgaccTTGTGTGAGGCTGTGGATCTT-CCTTCCTATTGGCTTTTCACATGATGCTGTGT--GTCTGCGTGAGGTCATTTATTGAGCACCAAATATGCCAAATATGCATCATGACTATGAGTCTAGCACAAGAGGGTGAT
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190626354 325 - 190850796 ACTGGGCTGGAAAGCAGTAGGCTGAAGGCCAGG-CTGGCCCACATTCTGT---------AATAA-ATGAGGACGattgaaacagccatgcctgttcacctgcctcttgtccat-gctgcttg-----ctcac-----cggcagagtggagtacttgggacacagaccatatggccacagaaacagaaatatttatgatctatccctttacagaaaacatttgctgacctcGCGTGTGGCAATCGATCTTCCCTTCCTATTGGCTGTTCACA-GTTTC--TGT--GGTTGCATGAGGTCATTTA-TGAGCACCAAATATG---------CATCATGACTGTGTATCTAGCACATGAGGGagac
i calJac3.chr3             C 0 I 3743
s mm10.chr8                 87773515 305 - 129401213 ACT------GAaaaccacagcctaaaggctaag-ctgggcc-catttcttt-------tttt---ataaagataattgaaacagctctgtccattcatttagcccttgcctatggctgcttttgtacctcat-----cagcagagtggaatagctgtgacagagaccatacgacctcagaaccaaacatatttactatcta--------------------gcTGACCCTGTATTAGGTCATCTAAATT-----CCTATTGACTTTTCCCATGCTGCTGTGGCACGCTGCATAAGGTcatttattgagcaccaactatg---------tgtcaagactctgtgAATGGTATATTAAGGTAAC
i mm10.chr8                I 5 C 0
s canFam3.chr16             18066813 333 -  59632846 ATTAggccagaaaactactgcctgatggtcaaatttggtccacttgtgtttaaaataattattt-aaaataattattgaaatagccatgcccgttcatttataacttgtttatggctacttt-----cacacagtaatatcagagctgagtagttgcaagagaggccatatgtcccaaaaagc---catacttactatctaagcctttacagaaaaggtgtg-----ccTGTGTTAGGTGATTTACCTT-----TCTGCTGACTGGTCACAAGGTGCTGTGTACCACTACATGA-GTCATTCGTTGAGCACCAACTATG---------TGTCGTGACTGCTAGTCCTATACATAAGAGTGAC
i canFam3.chr16            C 0 C 0
e chlSab2.chr7             135522841   0 + 135778131 C
e papAnu2.chr5             178587665   0 + 178775436 C
e macFas5.chr5             189168721   0 + 189454096 C
e rheMac3.chr5             183775459   0 + 184069350 C

a score=214995.000000
s hg38.chr4_KI270925v1_alt    389182 265 +    555799 GATCGCAAACATGTCATGATAGTTGCCGAAGGT-GCTGTGGACAAACATCACTCCCTTCCCTCCACGTTAGAGACAAGATGGGAAAGAGAAGTGGGGAGAAATTGTTCA-TATCCACAAAA-----AGACGTCCTTCACTAAAGAGCACTGGCTCAGCCCTTGAATGCTGAGAAACTAAAAACAGAGAAAGGTTAAGGACACAGGAAACAGGGATGACGAATAGCTCCTTACATTTTCTAATAACTCAGGGTAT----------TGCAGGTGGCCAGAGCCA
s panTro4.chr4             193102049 266 + 193495092 GTTCGCAAACATGTCATGATAGTTGTTGAAGGT-GCTGTGGACAAACATCACTCCCTTCCCTCCACGTTAGAGACAAGATGGGAAAGAGAAATGGGGAGAAATTGTTCA-TATCCACAAAGT----AGACGTCCTTCACTAAAGAGCACTGGCTCAGCCCTTGAATGCTGAGAAACTAAAAACAGAGAAAGGTTAAGGACACAGGAAACAGGGATGAGGAACAGCTCCTTACATTTTCTAATAACTCAGGGTAT----------TGCAAGTGGCCAGAGCCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198183976 267 + 198332218 GTTCGCAAACATGTCATGACAGCTGCCAAAGGTAGCCGTGGACAAACATCACTCCCTTCCCTCCACGTTAAAGATAAGACGACAAAGAGATATGGGGAGAAATTCTTCA-TATCCACAAAAT----AGATGTCCTTCACTAAAGAGCACTGGCTCAGCCCTTGAATGCTAAGAAACTAAAAACAGAGAAAGGTTAAGGACACAGGAAACAGGGGTGAGGAATAGCTCCTTACATTTTCTAATAACTCAGGGTAT----------TGCAAGTGGCCAGAGCCA
i ponAbe2.chr4             C 0 I 1706
s nomLeu3.chr7b            113858451 267 + 115148730 GTTCACAAACATGTCATGACAGTTGCCAAAGGTAGCCTTGGACAAACATCACTCCCTTCTCTCCATGTTAGAGATAAGATGGAAAAGAGAAATGGGGAGAAATTGTTCA-TATCCACAAAGT----AGACATCCTTCACTAAAGAGCACTGGCTCAGCCCTTGAATGCTAAgaaactaaaaacagagaaaggttaaggacacaggaaacagggatgaggaaTAGCTCCTTACATTTTCTAATAACTCAGGGTAT----------TGCAAGGGGCCAGAGCCA
i nomLeu3.chr7b            C 0 I 4
s mm10.chr8                 87773820 273 - 129401213 ATTCTCAAACAT-CAATGATATTTACCAAAGGTCACCATGAACAATTATCACTCTCTCCCCTTCATTTCAGAGACAAAATAGAAA--GACTGTGAGATGAAATTGCTGAGTGGCCAGCAAGTCAACGAACGTCCTTCTCCAAAGGAACATTGCTCAGCCCTTAATGATCAGGGGAATAAAAATGT----AGGTTTAGAGCACAAGAAATGGGGATAAGACATAGTTCCTTAT-CCTTATAA-AATTTGTGTCATATCCTTATCATATATATAGCCAGGTTTG
i mm10.chr8                C 0 C 0
s canFam3.chr16             18067146 262 -  59632846 ATTCACAAACAT-TAACGATAGTTGTCAAAGGTGGCCATGAACAAGTATAGCTCCCCTTTTTTCATTTTAGAGAGAAGGTGGAACATGGA-GTGGGGAGAAATTGTTCA-TATCCAAAGAAT----AGATATCCTTCACTAAAAGGCACTGCTTACCCCCTTGACTTGCAAGAAAATAAAAACAG--AAAGGTTAAGTACACAGGAAACAGGAATGAGGAACAGATCCTTATTTTCGCTAGCAACTCATGATAT----------CACTAGT-GCCAGAGCTG
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190626679 3743 - 190850796 I
e chlSab2.chr7             135522841   0 + 135778131 C
e papAnu2.chr5             178587665   0 + 178775436 C
e macFas5.chr5             189168721   0 + 189454096 C
e rheMac3.chr5             183775459   0 + 184069350 C

a score=14048.000000
s hg38.chr4_KI270925v1_alt    389447 78 +    555799 ACCCAA------ATCATCACATCCAAACATGGGACAAGGCAAAACCTGAAACTGTTAAGAGACATGCAGCGTCAGTTTGATTCC
s panTro4.chr4             193102315 78 + 193495092 ACCCAA------TTCATCACATCCAAACATGGGACAAGGCAAAGTCTGAAACTGTTAAGAGACATGCAGCGTCAGTTTGATTCC
i panTro4.chr4             C 0 C 0
s mm10.chr8                 87774093 77 - 129401213 -GCCAGCATTGCTCTGCCACAGCAATAC------CTAGTCCAAATCTAAAATTCCTTAGGGTTATCAGACGGCAGTTTGATTCC
i mm10.chr8                C 0 I 727
s canFam3.chr16             18067408 77 -  59632846 ACTTAC------ATTACTGCACCATAACCTGGGATAAGACAAACTC-GAAACTTGTTGGAGACCTCAAGCCGCAGTCTGATTCC
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190626679 3743 - 190850796 I
e chlSab2.chr7             135522841  0 + 135778131 C
e papAnu2.chr5             178587665  0 + 178775436 C
e macFas5.chr5             189168721  0 + 189454096 C
e rheMac3.chr5             183775459  0 + 184069350 C
e nomLeu3.chr7b            113858718  4 + 115148730 I
e ponAbe2.chr4             198184243 1706 + 198332218 I

a score=34689.000000
s hg38.chr4_KI270925v1_alt    389525 363 +    555799 CGCTGCGGACGAGGGGCAGCCTGCACATGCTGAGGATGGACCCCGACCCTCCTGTTGCTAGCAGGCTGAGGGCAATGCCATCTCTATGCTACCTTGTGTCA-----------GGTCACCACAGTGTCCCCAGCATCTGAATGCTGAGTGCAACCAAGGCTTTAGTTCAGCAACGTGAAACACCAGCTGC-ACTCCACACCCCGGCACCCCCACGCTGCATCCCACACCCCGGCACCCCCACGCTGCACTCCACACCCCGGCACTCACACGCCGCACTCCACACCCCGGCACCCCCACGCTGCACTCCACACCCCGCCTCTCACACGCTGCATCCCACACCCCGGCACCCCCACGCTGCACTCCACACCCCGGCAC
s panTro4.chr4             193102393 364 + 193495092 CGCTGCGGACGAGGGGCAGCCCGCACATGCTGAGGATGGACCGCGACCCTCCTGCTGCTAGCAGGCTGAGGGCAATGCCATCTCTATGCTACCCTGTGTCA-----------GGTCACCAAAGTGTCCCCAGCATCTGAATGCCGAGTGCAACCAAGGCTTTAGTTCAGCAACGTGAAACACCAGCTGCTCCTACAcaccccggcactcccacgctgtaccccacaccccggcactcccatgctgcaccccacaccccggcactcccatgctgcgccccacaccccggcactcccacgctgcactccacaccccgcctctcacacgctgcatcccacaccccggcacccccacgctgcaccccacaccccggcac
i panTro4.chr4             C 0 C 0
s canFam3.chr16             18067485 217 -  59632846 ATCTGCTTACCCGCGGCAGCCAACAAATGCTGGAGCTGCATTCTGGCCCTCCTGCTGCTAGGATGCTGACAGTAATTCCATCTTCATGTCACCCTGCCACATTCACCAACATTGTCAAAACAAGGCTCATGCGACCTGAATAC----TATGACTCAGGCTTCAGTTCAGAAATGTGAAGTACCAGCTGC-------------------------------------------TACTCCCATACTCTA-----------------------------------------------------GCATTTCACA---------------GCAGCAT-------------------------------------------
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87774170 727 - 129401213 I
e calJac3.chr3             190626679 3743 - 190850796 I
e chlSab2.chr7             135522841   0 + 135778131 C
e papAnu2.chr5             178587665   0 + 178775436 C
e macFas5.chr5             189168721   0 + 189454096 C
e rheMac3.chr5             183775459   0 + 184069350 C
e nomLeu3.chr7b            113858718   4 + 115148730 I
e ponAbe2.chr4             198184243 1706 + 198332218 I

a score=53762.000000
s hg38.chr4_KI270925v1_alt    389888 246 +    555799 TCCCA--------------------------------------------------------CGCTGCATCCCACCCTAGGAAAGCACAAGGAAATCATGTGAGCACCACAGGGGCCAATTTGTGCTGCATCTTCTCCAGCATTCCAGTCAACAG-ACA-CTGAGCAGTAGACAGGAAAGAATTCCTCAAGCTGAGTTCAACAGGAATCCCTTCCTTGAGAATATGTACCAGACCACAGGATTATTTTAGAAAGCATTAATCCTAGGAACATGTACTTGGGGTGATTCCTAACAGACTAGGAGTT
s panTro4.chr4             193102757 302 + 193495092 tcacATGCTGCACTCCACACCCCGGCTCTCATACGCTGCATCCCACACCCCGGCACTCACACGCTGCATCCCACCCGAGGAAAGCACAAGGAAATCATGTGAGCACCACAGGGGCCAATGTGTGCTGCATCTTCTCCAGCGTTCCAGTCAACAG-ACA-CTGAGCAGTAGACAGGAAAGAATTCCTCGAGCTAAGTTCAACAGGAATCCCTTCCTTGAGAATACGTACCAGACCACAGGATTATTTTAGAAAGCATTAATCCTAGGAACATGTACTTGGGGTGATTCCTAACATACTAGGAGTT
i panTro4.chr4             C 0 C 0
s mm10.chr8                 87774897 233 - 129401213 TCACA--------------------------------------------------------AGCTGCATTTCACCAGTGAAAACCACTA-GAAATCA-GCTAGCATCCCAGGGCCTGA---------CCCCATCTCCAGTGTTTTCTTCTACAGAACA-ATATCTAAT---CAGGAAAGCATGTGTTAAGCAGAAGCCAATAGCAATACATTGCTTGAGAGTGTATGCTAAACCACAAGAAAATTTTACAAAGCAGTGACCTTAGTAGCTTCTATTTGGTTAAGTTCATAACATACCCTGTGTT
i mm10.chr8                I 727 I 2133
s canFam3.chr16             18067702 235 -  59632846 --------------------------------------------------------------------TTTTGCCAGTGAAAATCTCATAGAAATTATATTAGCATCACAGAGGCCCAGTTATGTCTACATTTTTCCAGTGTGCTGGTCAACAG-ACACCTGAACAGTCATTAGGAAAGCATTCCTTAAGCCAGGCTCAATACTAATCCATTACTTGAGAATATGTACTGTTCCACAAGAAAATTTTACAAAGCACTGATCCTAAGAATTTCTGTTTGTGGTGGTTCATGACATACTATGAGTT
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190626679 3743 - 190850796 I
e chlSab2.chr7             135522841   0 + 135778131 C
e papAnu2.chr5             178587665   0 + 178775436 C
e macFas5.chr5             189168721   0 + 189454096 C
e rheMac3.chr5             183775459   0 + 184069350 C
e nomLeu3.chr7b            113858718   4 + 115148730 I
e ponAbe2.chr4             198184243 1706 + 198332218 I

a score=18183.000000
s hg38.chr4_KI270925v1_alt    390134 114 +    555799 ATAAATAGAGCACAGA--CATATTTGGTCTATAAATAAAATTCTTTTAACTGATGttttattgtggtaagatatacatgac-taaaatgtgccattttaatgattttcaaatgtaca
s panTro4.chr4             193103059 114 + 193495092 ATAAATAGAGCACAGA--CATATTTGGTCTATAAATAAAATTCTTTTAACTGATGttctattgtggtaagatacacagaac-taaaatgtgccatttcaatgattttcaaatgtaca
i panTro4.chr4             C 0 C 0
s canFam3.chr16             18067937 109 -  59632846 ----ATAGAGAACAGAATTATATTTGCCCTATGAATAAGTTTTTTCCAACTGAT----Tattgtggtaaactatatataacataaaatctactatattaatcattctttaagattca
i canFam3.chr16            C 0 I 4256
e mm10.chr8                 87775130 2133 - 129401213 I
e calJac3.chr3             190626679 3743 - 190850796 I
e chlSab2.chr7             135522841   0 + 135778131 C
e papAnu2.chr5             178587665   0 + 178775436 C
e macFas5.chr5             189168721   0 + 189454096 C
e rheMac3.chr5             183775459   0 + 184069350 C
e nomLeu3.chr7b            113858718   4 + 115148730 I
e ponAbe2.chr4             198184243 1706 + 198332218 I

a score=746186.000000
s hg38.chr4_KI270925v1_alt    390248 8261 +    555799  
s panTro4.chr4             193103173 8267 + 193495092  
i panTro4.chr4             C 0 C 0
e mm10.chr8                 87775130 2133 - 129401213 I
e canFam3.chr16             18068046 4256 -  59632846 I
e calJac3.chr3             190626679 3743 - 190850796 I
e chlSab2.chr7             135522841    0 + 135778131 C
e papAnu2.chr5             178587665    0 + 178775436 C
e macFas5.chr5             189168721    0 + 189454096 C
e rheMac3.chr5             183775459    0 + 184069350 C
e nomLeu3.chr7b            113858718    4 + 115148730 I
e ponAbe2.chr4             198184243 1706 + 198332218 I

a score=23887.000000
s hg38.chr4_KI270925v1_alt    398509 19 +    555799 ttaactttgaaatacta--ag
s panTro4.chr4             193111440 19 + 193495092 ttaactttgaaatacta--ag
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183775459 21 + 184069350 ttaactttgaaatactattag
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189168721 21 + 189454096 ttaactttgaaatactattag
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178587665 21 + 178775436 TTAACTTTGAAATACtattag
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135522841 21 + 135778131 ttaactttgaaatactattag
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87775130 2133 - 129401213 I
e canFam3.chr16             18068046 4256 -  59632846 I
e calJac3.chr3             190626679 3743 - 190850796 I
e nomLeu3.chr7b            113858718  4 + 115148730 I
e ponAbe2.chr4             198184243 1706 + 198332218 I

a score=2126908.000000
s hg38.chr4_KI270925v1_alt    398528 1176 +    555799  
s panTro4.chr4             193111459 1175 + 193495092  
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113858722 1174 + 115148730  
i nomLeu3.chr7b            I 4 C 0
s rheMac3.chr5             183775480 1176 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189168742 1176 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178587686 1176 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135522862 1175 + 135778131  
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87775130 2133 - 129401213 I
e canFam3.chr16             18068046 4256 -  59632846 I
e calJac3.chr3             190626679 3743 - 190850796 I
e ponAbe2.chr4             198184243 1706 + 198332218 I

a score=247557.000000
s hg38.chr4_KI270925v1_alt    399704 132 +    555799 tcttccatttccctcatttcttttatgtttactatttggaaatcttccacaaggaagatttttttcacttctccttcaattatttatgtatgtaaccatttatttttatcagtataaactcactgatattta
s panTro4.chr4             193112634 132 + 193495092 tcttccgtttccctcctttcttttatgtttactatttggaaatcttccacaaggaagatttttttcacttctccttcaattatttatgtatttaaccatttatttttatcagtataaactcacagatattta
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113859896 131 + 115148730 tcttccatttccctcatttcttttatgtttactatttggaaatattccacaaggaaga-ttttttcacttcttcctcaattatttatgtatttaaccatttatttttatcagtataaactcacagatattta
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183776656 126 + 184069350 tcttctatttccctcatttcttttatgtttactatttggaaatcctccacac---aga-ctttttcacttccccctcaattatttatgtatttgaccatttatttttatcagtataaa--cacagatattta
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189169918 126 + 189454096 tcttctatttccctcatttcttttatgtttactatttggaaatcctccacac---aga-ctttttcacttccccctcaattatttatgtatttgaccatttatttttatcagtataaa--cacagatattta
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178588862 126 + 178775436 TCTTCTATTTCCctcatttcttttatgtttactATCTGGAAATCCTCCACAC---GGA-CTTTTTCACTTCCCCctcaattatttatgtatttgaccatttatttttatcagtataaa--cacagatattta
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135524037 129 + 135778131 tcttctatttccctcatttcttttatgtttactatttggaaatcctccacacggaaga-ctttttcacttccccctcaattatttatgtatttgaccatttatttttatcagtataaa--cacagatattta
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             18072302 125 -  59632846 ttttctatttccctctttccttctgtatttaatatttggaattctcctataagggaga--tcggtcacttctccaccacttatt----tattcaattatttatttatatcaatatgaactc-tgggtatgtg
i canFam3.chr16            I 4256 C 0
e mm10.chr8                 87775130 2133 - 129401213 I
e calJac3.chr3             190626679 3743 - 190850796 I
e ponAbe2.chr4             198184243 1706 + 198332218 I

a score=626222.000000
s hg38.chr4_KI270925v1_alt    399836 267 +    555799 cttttttctttgggttataactcagtagtatttttattaattttgttgttcaaagttttccagctttggccactgggagctctttcaggttggctgc-atgttgctttgtcagg-cctgttccctgaccccttactttctggcaacacaaggtcctccaggttcatcatgcattttcccttccctagcccttgagtcaggcagttctccagggagtcctagttcAACAGGGACAACTTTTCAAATCAACTTCCATGTGTTGCTATGTAT
s panTro4.chr4             193112766 267 + 193495092 cttttttctttgggttataactcagtagtatttttattaattttgttgttcaaagttttccagctttggccactgggagctctttcaggttggctgc-atgttgctttgtcagg-cctgttccctgaccccttactttctggcaacacaaggtcctccaggttcatcatgcattttcccttccctagcccttgagtcagccagttctccagggagtcctagttcAAAAGGGACAACTTTTCAAATCAACTTCCATGTGTTGCTATGTAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198185949 267 + 198332218 Cttttttctttgcgttatcactcagtagtatttttattaattttgttgttccaagttttccagctttggccactgggagctctttcaggttggctgc-atgttcctttgtcagg-cctgttccctgaccccttactttctggcaccacaaggtcctccaggttcatcatgcattttcccttccctagccctagagtcagccagttctccagggagtcctagttcAAAAGGGACAACTTTTCAAGTCAACTTCCATGTGTTGCTATGTAT
i ponAbe2.chr4             I 1706 C 0
s nomLeu3.chr7b            113860027 267 + 115148730 cttttttcttcaggttataactcagtagtatttttattaattttgttgctcaaagttttccagctttggccactgggagctctttcaggtcggttgc-atgttcgtttgttagg-cttgttccctgacctcttactttctggcaccacaaggttctccaggttcatcatgcattttcccttccctagccctagagtcagccagttctccagggagtcctagttcAAAAGGGACAACTTTTCAAGTCAACTTCCATGTGTTGCTATGTAT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183776782 267 + 184069350 cttttttctttgagttacaactcagtagtatttttattaattttgttgctcaaagttttccagctttggccattgggagctatttcaggttggctgc-atgttcctttgtcagg-cctgttccctgaccccttactttctgcaaccacaaggtcctccaggctcaccaggagttttcccttccccagccctagagtcagccaggtctccagggaatccctgttcAAAAGGGACAACTTTTCAAGTCAACCTCCATGTGTTGCTATGTAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189170044 267 + 189454096 cttttttctttgagttacaactcagtagtatttttattaattttgttgctcaaagttttccagctttggccattgggagctatttcaggttggctgc-atgttcctttgtcagg-cctgttccctgaccccttactttctgcaaccacaaggtcctccaggctcaccaggagttttcccttccccagccctagagtcagccaggtctccagggaatccctgttcAAAAGGGACAACTTTTCAAGTCAACCTCCATGTGTTGCTATGTAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178588988 267 + 178775436 cttttttctttgagttaCAACTCAgtagtatttttattaattttgttgctcaaagttttccagctttggccattgggagctatTTCAGGTTGGCTGC-ATGTTCCTTTGTCAGG-CCTGTTCCCTGACCCCTTACTTTCTGCAACCACAAGGTCCTCCAGGCTCACCAGGAGTTTTCCCTTCCCTAGCCCTAGAGTCAGCCAGGTCTCCAGGGAATCCCTGTTCAAAAGGGACAACTTTTCAAGTCAACCTCCATGTGTTTCTATGTAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135524166 267 + 135778131 ctttcttctttgagttataactcagtagtatttttattaattttgttgctcaaagttttccagctttggccactgggagctatttcaggttggctgc-atgttcctttgtcagg-cctgttccctgaccccttactttctgcaaccacaaggtcctccaggctcaccatgagttttcccttccctagccctagagtcaggcaggtcttcagggaatccttgttcAAAAGGGACAACTTTTCAAGTCAACCTCCATGTGTTGCTATGTAT
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             18072427 119 -  59632846 ttctattttgggggttgtatttcagtagtagtt------acttggtcacttgaattgatccagctctggccattgagagctcttataagtccactcctgtgttcttctgacatgccctattcctt------------------------------------------------------------------------------------------------------------------------------------------------
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87775130 2133 - 129401213 I
e calJac3.chr3             190626679 3743 - 190850796 I

a score=11580.000000
s hg38.chr4_KI270925v1_alt    400103 15 +    555799 AATTTTCAGATTA----tt
s panTro4.chr4             193113033 15 + 193495092 AATTTTCAGATTA----tt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198186216 19 + 198332218 GATTTTCAGATTAtttctt
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113860294 19 + 115148730 AATTTTCAGATTAtttctt
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189170311 15 + 189454096 AATTTTCAGATTA----TT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178589255 15 + 178775436 AATTTTCAGATTA----TT
i papAnu2.chr5             C 0 C 0
s canFam3.chr16             18072546  4 -  59632846 --tctt-------------
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87775130 2133 - 129401213 I
e calJac3.chr3             190626679 3743 - 190850796 I
e chlSab2.chr7             135524433  0 + 135778131 C
e rheMac3.chr5             183777049  0 + 184069350 C

a score=38512.000000
s hg38.chr4_KI270925v1_alt    400118 103 +    555799 tctt--------------------------ttctttttttttttttgag-atggagtctcgctctttcgcccaggccagagtgcagtggcacgatctccgctcactgcaagctctgcctactaggttcat
s panTro4.chr4             193113048 104 + 193495092 tctt--------------------------ttcttttttttgggggggggatgaagtctcgctctttagcccaggccagagtgcagtggcatgatctctgctcactgcaagctctgcctcctaggttcat
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198186235 103 + 198332218 tctt--------------------------tttttttcttttttttgag-atagagtctcactctttcgcccaggccagagtgcagtggcgtgatctcagctcactgcaagctccacctcccaggttcac
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113860313 129 + 115148730 tctttctttctttctttctttctttctttctttctttcttttttttgag-atggagtctcgctctttcgcccaggccagagtgcagtggcgtaatttcagctcattgcaagctccacctcccaggttcac
i nomLeu3.chr7b            C 0 C 0
s canFam3.chr16             18072550  47 -  59632846 tctt--------------------------ttttgtttttcctttttgg----------cac----------------------------------------cactaaatgct-------ccaggctcat
i canFam3.chr16            C 0 I 105
e mm10.chr8                 87775130 2133 - 129401213 I
e calJac3.chr3             190626679 3743 - 190850796 I
e chlSab2.chr7             135524433   0 + 135778131 C
e papAnu2.chr5             178589270   0 + 178775436 C
e macFas5.chr5             189170326   0 + 189454096 C
e rheMac3.chr5             183777049   0 + 184069350 C

a score=97109.000000
s hg38.chr4_KI270925v1_alt    400221 213 +    555799 gccattctcctgtctcagcctcctgagtagctgggactacaggcacccgccaccacgcctggctaatttttttttttttttttttttgtatttttagtagagacggggtttcactgtgttagccaggatggtctccatctcctgaccttgtgatccgcccgtcttggcctcccaaagtgctgggattacaggcatgagccaccacgcccggcc
s panTro4.chr4             193113152 206 + 193495092 gccattctcctgcctcagcctcctgagtagctgggactacaggcacccgccaccatacccggctaatttttttttttttt-------gtatttttagtagagatggggtttcactgtgttagccaggatagtctccatctcctgaccttgtgatccgcccgtcttggcctcccaaagtgctgggattacaggcatgagccaccgtgcccggcc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198186338 203 + 198332218 gccattctctcacctcagcctcctgagtagctgggactacaggcacccaccactgctcccagctaattttttttttt----------gtatttttagtagagacagggtttcaccatgttagccaggatggtctcgatctcctgacctcatgatccacccgtcttggcctcccaaagtgctgggattacaggcatgagccacctcacccggcc
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113860442 202 + 115148730 accattctcccacctcagcctcccgagtagctgggactacaggcacctgccaccacgcccagctaatttttttttct-----------tattttcagtagagacagggtttcaccatattagccaggatggtctccagctcctgaccttgtgatccacctgtcttggcctcccaaagtgctgggattacaggcatgagccactgtgcctggcA
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87775130 2133 - 129401213 I
e canFam3.chr16             18072597 105 -  59632846 I
e calJac3.chr3             190626679 3743 - 190850796 I
e chlSab2.chr7             135524433   0 + 135778131 C
e papAnu2.chr5             178589270   0 + 178775436 C
e macFas5.chr5             189170326   0 + 189454096 C
e rheMac3.chr5             183777049   0 + 184069350 C

a score=1365.000000
s hg38.chr4_KI270925v1_alt    400434 1 +    555799 A
s panTro4.chr4             193113358 1 + 193495092 A
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198186541 1 + 198332218 A
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113860644 1 + 115148730 A
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183777049 1 + 184069350 A
i rheMac3.chr5             C 0 C 0
s chlSab2.chr7             135524433 1 + 135778131 A
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87775130 2133 - 129401213 I
e canFam3.chr16             18072597 105 -  59632846 I
e calJac3.chr3             190626679 3743 - 190850796 I
e papAnu2.chr5             178589270 0 + 178775436 C
e macFas5.chr5             189170326 0 + 189454096 C

a score=23418.000000
s hg38.chr4_KI270925v1_alt    400435 14 +    555799 ATTTTCAGATTATC
s panTro4.chr4             193113359 14 + 193495092 ATTTTCAGATTATT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198186542 14 + 198332218 ATTTTCAGATTATT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113860645 14 + 115148730 ATTTTCAGATTATT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183777050 14 + 184069350 ATTTTCAGATTATT
i rheMac3.chr5             C 0 C 0
s chlSab2.chr7             135524434 14 + 135778131 ATTTTCAGATTATT
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             18072702 14 -  59632846 ATTCCTAGATTGTT
i canFam3.chr16            I 105 C 0
e mm10.chr8                 87775130 2133 - 129401213 I
e calJac3.chr3             190626679 3743 - 190850796 I
e papAnu2.chr5             178589270  0 + 178775436 C
e macFas5.chr5             189170326  0 + 189454096 C

a score=194385.000000
s hg38.chr4_KI270925v1_alt    400449 62 +    555799 TCTatgctataattaatgctataattaaCTATAGATTTTCCATAATTAAGTCATATGTATTA
s panTro4.chr4             193113373 62 + 193495092 TCTatgctataattaatgctataattaaCTATAGATTTTCCATAATTAAGTCATATGTATTA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198186556 62 + 198332218 TCTATGCTACAATTAATGCTATAATTAACTATAGATTTTCCGTAATTAAGTCATATGTATTA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113860659 62 + 115148730 TCTatgctataattaatgctataattaaCTATAGATTTTCCATAATTAAGTCGTGTGTATTA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183777064 62 + 184069350 CCTatgctataattaatgctataattaaCTATAGATTTTCCATAATTAAGTCATATGTATTA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189170326 62 + 189454096 CCTatgctataattaatgctataattaaCTATAGATTTTCCATAATTAAGTCATATGTATTA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178589270 62 + 178775436 CCTatgctataattaatgctataattaaCTATAGATTTTCCATAATTAAGTCATATGTATTA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135524448 62 + 135778131 TCTatgctataattaatgctataattaaCTATAGATTTTCCATAATTAAGTCATATATATTA
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             18072716 62 -  59632846 TCTatgctataattaatgctataattaaCTATAGATTTTCTATAACTAAGCCATGCATATTA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87775130 2133 - 129401213 I
e calJac3.chr3             190626679 3743 - 190850796 I

a score=606227.000000
s hg38.chr4_KI270925v1_alt    400511 195 +    555799 CAGCACTCAGACTAACAGGCTGCAGTAAGAAGGAACATGAACCTATCACCAATGCTTTACCCTTCTTTC-TCTAGCACTCACCTgg---taatctctgtgggcccaactggctctaagattctatgattctataatGAAAAGACAAAAGGCAAAAGATGTTCCCATAAGGGACATTTCTTTGAATCAGAAAATTGTTTC
s panTro4.chr4             193113435 195 + 193495092 CAGCACTCAGACTAACAGGCTGCAGTAAGAAGGAACATGAACATATCACCAATGCTTTACCCATCTTTC-TCTAGTACTCACctag---taatctctgtgggcccaactggctctaagattctgtgattctataatGAAAAGACAAAAGGCAAAAGATGTTCCCATGAGGGACATTTCTTTGAATCAGAAAATTGTTTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198186618 198 + 198332218 CAGCACTCAGACTAATAGGCTGCATTAAGAAGGAACATGAACCTATCACCAATGCTTTACCCTTCTTTC-TCTAGCACTCACCTGGTAataatctctgtgggcccaaccggctctaagattctatgattctataatGAAAAGACAGAAGGCAAAAGATGTTCCCATAAGGGATATTTCTTTGAATCAGAAAATTGTTTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113860721 194 + 115148730 CAGCACTCAGACCAACAGGCTGCATT-AGAAGGAACATGAACCTATCACCAATGCTTTACCCTTCTTTC-TCTAGCACTCACCTgg---taatctctgttggcccaactggctctaagattctatgattctataatGAAAAGACAAAAGGCAAAAGATGTTCCCATGAGGGACATTTCTTTGAATCAGAAAATTGTTTC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183777126 195 + 184069350 CAGCACTCAGACTAACAGGCAGCATTAAGAAGGAACATGAACCTATCACCAATGCTTCACCCTTCTTTC-TCTAGCACTCACctag---taatctctgtgggcccaaccagctctaagattctatgattctacaatGAAAAGACAAAAGGCAAAAGATGTTCCCATGAGGAACATTTCTTTGAATCAGAAAATTGTTTC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189170388 195 + 189454096 CAGCACTCAGACTAACAGGCAGCATTAAGAAGGAACATGAACCTATCACCAATGCTTCACCCTTCTTTC-TCTAGCACTCACctag---taatctctgtgggcccaaccagctctaagattctatgattctacaatGAAAAGACAAAAGGCAAAAGATGTTCCCATGAGGAACATTTCTTTGAATCAGAAAATTGTTTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178589332 195 + 178775436 CAGCACTCAGACTAACAGGCAGCATTAAGAAGGAACATGAACCTATCACCAATGCTTCACCCTTCTTTC-TCTAGCACTCACCTAG---TAATCTCTGTGGGCCCAACCAGCTCTAAGATTCTATGATTctacaatgaaaagacaaaaggCAAAAGATGTTCCCATGAGGAACATTTCTTTGAATcagaaaattgtttc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135524510 195 + 135778131 CAGCACTCAGACTAACAGGCAGCATTAAGAAGGAACATGAACCTATCACCAATGCTTCACCCTTCTTTC-TCTAGCACTCACctag---taatctccgtgggcccaaccagctctaagattctatgattctacaatGAAAAGACAAAAGGCAAAAGATGTTCCCATGAGGAACATTTCTTTGAATCAGAAAATTGTTTC
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87777263 187 - 129401213 CAGTGCTAAGGC-AATGAGCTGGACTGGGAAGGAACGGGAACCCATCAGCAAAGCTCCGCCTTTCTTTC-CCCAGCACTCACATAC---TAATTGCTGTGGATCCTAAAGGCTATAA-ATTCCATGGTTCCAAAGCAAAAACTT------CAAGAGCTTCTCTCAGGAATCGCTTGTCCTGGGGTGAGATCACTGTTTC
i mm10.chr8                I 2133 C 0
s canFam3.chr16             18072778 196 -  59632846 TAGTCCCCAAGCTACTAGACCGTGTTAAAGTGGAACATGAATCCATCAACAGTATTTTATCCTTCTGTCTTCTAGCACTTACCTAC--ATAATCTCTATGGGCCCTATAGGCTATACAATTTCGTGATTCTACAATGGAAAGACAAAGGGCAAAA-ATGTTCCCATAAGGAACTTTTCCTTGTTTCAGACAAATGTTTC
i canFam3.chr16            C 0 I 431
e calJac3.chr3             190626679 3743 - 190850796 I

a score=877105.000000
s hg38.chr4_KI270925v1_alt    400706 294 +    555799 ATTTTGCCA-AAAATAAATTTAAGCCCTAGTTGACCTCCATTTTGCCTTTTCTATCCTT---CCTGTAGTTTAATCCTATTCCTTCCATTTTATTATCAATTTTGAAATGAAAATTTAAATTTGTTTTGCTTGATCAAATTATGATataaataaagtaataaaaatacaaaacaataaatTATACTTACTTATAAAGTCTACAGCTTCTTGAAATTAACATATTATAATCTACTGCTGCTGAAATCTTTAGTCATCAAACAGTTTAAAC-ACTAGAGTagtggttcttgacagagggga
s panTro4.chr4             193113630 290 + 193495092 ATTTTGCCA-AAAATAAATGTAAGCCCTAGTTGACCTCCGTTTTGCCTTTTCTATCCTT---CCTGTAGTTTAATCCTATTCCTTCCATTTTATTATCAATTTTGAAATGAAAATTTAAATTTGTTTTGCTTGATCAAATTATGATATAAA----GTAATAAAAATACAAAACAATAAATTATACTTACTTATAAAGTCTACAGCTTCTTCAAATTAACATATTATAATCTGCTGCTGCTGAAATCTTTAGTCATCAAACAGTTTAAAC-ACTAGAGTagtggttcttgacagagggga
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198186816 294 + 198332218 ATTTTGCCA-AAAATAAATTTAAGCCCTAGTTGACCTCCATTTTGCTTTTCCTATCCTT---CCTATAGTTTAATCCTATTCCTTCCATTTTATTATCAATTTTGAAATGAAAATTTAAATTTGTTTTGCTTGATCAAATTAGGATATAAATAAAGTAATAAAAATACAAAACAATAAATTATACTTACTTATAAAGTCTACAGCTTCCTGAAATTAACATATTATAATCTACTGCTGCTGAAATCTTTAGCCATCAAACAGTTTAAAC-ACTAGAGcagtggttctttacagaaggga
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113860915 294 + 115148730 ATTTTGCCA-AAAATAAATTTAAGCCCTAGTTGACCTCCGTGTTGCCTTTCCTATCCTT---CCTATAGTTTAATCCTATTCTTTCCATTTTATTATCAATTTTGAAATGAAAATTTAAGTTTGTTTTGCTTGATCAAATTAGGATATAAATAAAGTAATAAAAATACAAAACAATAAATTATACTTACTTATAAAGTCTACAGCTTCTTGAAATTAACATATTATAATCTACTGCTGCTGAAATCTTTAGCCATCAAACAGTTTAAAC-ACTACAGcagtggttcttgacagaaggga
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183777321 293 + 184069350 ATTTTGCCA-AAAATAAATTTAAGCCCTAGTTGACCTCCATTTCGCCTTTCCTATCCTT---CCTATAGTTTAACCCTATTCCTTCCATTTTATTATCAATTTTGAAATGAAAATTTAAATTTGCTTTGCTTGATCAAATTACTACGTAAATAAGGTAATAAACATACAAAATAATAAATTAT-CTTACTTATAAAGTCTACAGCTTCTTGAAATTAAGATATTATAATCTAGTGCTGCTGAAATCTTCAGTCATCAAATAGTTTAAAC-ACTAGAGCAGGGGTTCTTGACAGAGGGGA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189170583 293 + 189454096 ATTTTGCCA-AAAATAAATTTAAGCCCTAGTTGACCTCCATTTCGCCTTTCCTATCCTT---CCTATAGTTTAACCCTATTCCTTCCATTTTATTATCAATTTTGAAATGAAAATTTAAATTTGCTTTGCTTGATCAAATTACTATGTAAATAAGGTAATAAACATACAAAATAATAAATTAT-CTTACTTATAAAGTCTACAGCTTCTTGAAATTAAGATATTATAATCTAGTGCTGCTGAAATCTTCAGTCATCAAATAGTTTAAAC-ACTAGAGcaggggttcttgacagagggga
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178589527 293 + 178775436 attttgcca-aaaataaatttaagcccTAGTTGACCTCTATTTCGCCTTTCCTATCCTT---CCTATAGTTTAACCCTATTCCTTCCATTTTATTAtcaattttgaaatgaaaatttaaatttgctTTGCTTGATCAAATTACTATGTAAATAAGgtaataaacatacaaaataataaattat-cttacTTATAAAGTCTATAGCTTCTTGAAATTAAGATATTATAATCTAGTGCTGCTGAAATCTTCAGTCATCAAATAGTTTAAAC-ACTAGAGCAGGGGTTCTTGACAGACGGGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135524705 293 + 135778131 ATTTTGCCA-AAAATAAATTTAAGCCCTAGTTGACCTCCATTTCGCCTTTCCCATCCTT---CCTATAGTTTAACCCTATTCCTTCCATTTTATTATCAATTTTGAAATGAAAATTTAAATTTGCTTTGCTTGATCAAATTACTATGTAAACAAGGTAATAAACATACAAAATAATAAATTAT-CTTACTTATAAAGTCTACAGCTTCTTGAAATTAAGATATTATAATCTAGTGCTGCTGAAATCTTCAGTAATCAAATAGTTTAAAC-ACTAGAGcaggggttcttgacagagggga
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87777450 280 - 129401213 ACTTCATCAGAAAATAAATGTAGGCCTTAGAGGATGTCGGCTTCATTTTTGCAACTCTT----CTATGGTTGGAGCAC-TTCCTTTCATTGTGTTGTTAATTTTTCAATGAAACTTTAA--------TGTTTTATCAAATTGCTGTATTAA----ATAATAAA-ATATACAGAAATGTCTTCTACTTACATATAAGGGCTACATCATTCTGAAATTAAGCTGTTATTACCTACTGATACCTAAGTCACCAGTGGCCAAGCAGTGTAAAAGACTACAGGAATGGTTATTAACA-AGAGAG
i mm10.chr8                C 0 C 0
s canFam3.chr16             18073405 291 -  59632846 ATTTTGCCA-AAAATGTATTTAACCCCTAGTTAAGCTCTACTTTATCTTTCCTAGCCCCTCCCCCAAGGTTTACCCTTACTCCTTCCATTTTATT---AACTTTGAAATAAATTTTTAAGTTTGTTTTACTGTATCAAATTACTATAGCAATAAGATAATAAAAATATAGAACAATGAACTCTGCTTACTTATAAACCCTTT--CTTCTTGACATTAACCTAATATGATCTACTGTTGCCTAAATCAT-AGTCACCACACAATTTAAAC-ACTAGAGcagtggttctcaacagaaggga
i canFam3.chr16            I 431 I 7
e calJac3.chr3             190626679 3743 - 190850796 I

a score=23130.000000
s hg38.chr4_KI270925v1_alt    401000 8 +    555799 ctttgccc
s panTro4.chr4             193113920 8 + 193495092 ctttgccc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198187110 8 + 198332218 ctttgccc
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113861209 8 + 115148730 ctttgccc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183777614 8 + 184069350 CTTTGCTC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189170876 8 + 189454096 ctttgctc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178589820 8 + 178775436 CTTtgctc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135524998 8 + 135778131 ctttgctc
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87777730 8 - 129401213 CTTCACCC
i mm10.chr8                C 0 I 6268
e canFam3.chr16             18073696 7 -  59632846 I
e calJac3.chr3             190626679 3743 - 190850796 I

a score=1080894.000000
s hg38.chr4_KI270925v1_alt    401008 469 +    555799 cgatatggattggctgtgcccccatgcaaatcttatcttgaattgtagcttccacaattcccacatgttgtgggagggatcaagtaggaggtaattgaatcacggggaaaggcttttcccatgctcttctcatgataactaataagtctcatgagacataat-ggttttgtaagggagaacccttttcacttagttcccattctctcttgctgctgccatgtaagaagtacttttcgccttccaccatgattgtgaggcctccctagccacatggaactgtgagtttattaaaccta-ttttctctccagtctcaggtatgtctttatcagcagtgtgaaaatgaactaatacagtaaattggtaccagtggactggggcattgctgaaaagatacccaaaaatgtgaaagcaactttggaactggctaacaggcataggttgaaactgtttggagggctcagaagaagac
s panTro4.chr4             193113928 469 + 193495092 cgatatggattggctgtgcccccatgcaaatcttatcttgaattgtagcttccacaattcccacatgttgtgggagggatccagtaggaggtaattgaatcacggggaaaggcttttcccatgctcttctcatgataattaataagtctcatgagacataat-ggttttgtaagggagaacccttttcacttagttcccattctctcttgctgctgccatgtaagaagtacttttcgccttccaccatgattgtgaggcctccctagccacatggaactgtgagtttattaaaccta-ttttctctccagtctcaggtatgtctttatcagcagtgtgaaaatgaactaatacagtaaattggtaccagtggactggggcatggctgaaaagatacccaagaatgtgaaagcaactttggaactggctaacaggcataggttgaaactgtttggagggctcagaagaagac
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198187118 470 + 198332218 caatatggtttggctgtgcccccatgcaaatctcgtcttgaattgtagcttccacaattcccacatgttgtaggagggatccagtaggaggtaattgaatcatgggggaaggcttttcccatgttcttctcgtgataatgaataagtctcatgagacataat-ggttttgtaagggagaacccttttcacttagttcccattctctcttgctgctgccatgtaagaagtacttttcgccttctaccatgattgtgaggcctccccagccacgtggaactgtgagtttattaaacctatttttctcccaagtctcaggtatgtctttatcagcagtgtgaaaatgaactaatacaGTaaattggtaccagtggactggggcattgctgaaaagataccccaaaatgtgaaagcaactttggaaatggcgaacaggcagaggttgaaatagtttggagggctcaaaagaagac
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113861217 470 + 115148730 caatatggtttggctgtgcccccatgcgaatctcatcttgaactgtagctttcacaattcccacatgttgtgggagggatccagtaggaggtaattgaatcatgagggaaggcttttcccatgctcttctcatgataatgaataagtctcatgagacataat-ggttttgtaaaggggaacccttttcgcttagttcccattctctcctgctgctgccatgtaagaagtacttttcaccttccaccatgattgtgaggcccccccagccacacggaactgtgagtttattaaacctatctttctcccaagtctcaggtatgtctttatcagcagtgtgaaaacgaactaatacagtaaattggtaccagtggactggggcattgctgaaaagatacccaaaaatgtgaaagcaactttggaaatggctaacaggcagaggttgaaacagtctggagggctcaaaagaagac
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183777622 456 + 184069350 tgatatggtttggctgtgtccccacgcaaatctcatcttgaattgtagcttccacaattcccacatgttctg--------------ggaggtaattgaatcac-ggggaggacgtttcccatgctcttctcatgataatgaataagtctcatgagacataatgggctttgtaaagggaaatccttttcacttagttcccattctctcttgctgctgccatgtaagaagtacttttcaccttctgccatgattgtgaggcctccccagccacatggaactgtgagtttattaaacctatttttctccccagtctcaggtatgtctttattggcagtgtgaaaatgaacttatacagtaagttggtaccagtggactggggcattgctgaaaagatacccaaaaatgtgaaagcaactttggaactggctaacaagcagaggttgaaacagtttggagggctcagaagaagac
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189170884 456 + 189454096 tgatatggtttggctgtgtccccacgcaaatctcatcttgaattgtagcttccacaattcccacatgttctg--------------ggaggtaattgaatcac-ggggaggatgtttcccatgctctgctcatgataatgaataagtctcatgagacataatgggctttgtaaagggaaatccttttcacttagttcccattctctcttgctgctgccatgtaagaagtacttttcaccttctgccatgattgtgaggcctccccagccacatggaactgtgagtttattaaacctatttttctccccagtctcaggtatgtctttattggcagtgtgaaaatgaacttatacagtaagttggtaccagtggactggggcattgctgaaaagatacccaaaaatgtgaaagcaactttggaactggctaacaagcagaggtggaaacagtttggagggctcagaagaagac
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178589828 456 + 178775436 tgatatggtttggctgtgtccccacgcaaatctcatcttgaattgtagcttccacaaTTTCCACATGttctg--------------ggaggtaattgaatcac-agggagGACgtttcccatgctcttctcatgataatgaataagtctcatgagacatAATGGGTTTTGTAAAGGGAAATCCTTTTCACTTAGTtcccattctctcttgctgctgccatgtaagaagtacttttcaccttccgccatgattgtgaggcctccccagccacatggaactgtgagtttattaaacctatttttctccccagtctcaggtatgtctttattggtagtgtgaaaatgaacttatacagtaaattggtaccagtggactggggcattgctgaaaagatacccaaaaatgtgaaagcaactttggaactagctaacaagcagaggttgaaacagtttggagggctcagaagaagac
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135525006 457 + 135778131 tgatatggtttggctgtgtccccacgcaaatctcatcttgaattgtagcttccacaattcccacatgttctg--------------ggagctaattgaatcacaggggaggacgtttcccatgctcttctcatgataatgaataagtctcatgagacataatgggttttgtcaagggaaatccttttcacttagttcccattctctcttgctgctgccatgtaagaaatacttttcaccttctgccatgattgtgaggcctccccagccacatggaactgtgagtttattaaacctatttttccccccagtctcaggtatgtctttattggcagtgtgaaaatgaatttatacagtaaattggtaccagtggactggggcattgctgaaaagatacccaaaaatgtgaaagcaactttggaactggctaacaagcagaggttgaaacagtttggagggctcagaagaagac
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87777738 6268 - 129401213 I
e canFam3.chr16             18073696   7 -  59632846 I
e calJac3.chr3             190626679 3743 - 190850796 I

a score=640162.000000
s hg38.chr4_KI270925v1_alt    401477 216 +    555799 agaaaatataggaatatttggaactccctagtaaagactttt-aaatggctttgagcaaaatgctgataatgatatgggcaatgaaatccgggctgaggtggtctcagatggagaggaggaatttgttgggaactggagcaaaggtgactcttgctatattttagcaaagatactggcagcattttgcccctgacctagagatttgtggaactttga
s panTro4.chr4             193114397 217 + 193495092 aggaaatgtgggaatatttggaactccctagtagagactttttaaatggctttgagcaaaatgctgataatgatatgggcaatgaaatccgggctgaggtggtatcagatggagaggaggaatttgttgggaactggagcaaaggtgactcttgctatattttagcaaagatactggcagcattttgcccctgacctagagatttgtggaactttga
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198187588 217 + 198332218 aggaaatgtgggaatatttggaacaccctagtagagactttttaaatggctttgagtaaaatgctgataatgatatgggcaatgaaatccgggctgaggtggtctcagatggagaggaggaatttcttgggaactggagcaaaggtgactcttgctatattttagcaaagatactggcagcattctgcccctgacctagagatttgtggaactttga
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113861687 217 + 115148730 aggaaatgtgggaatatttggaattccctagtagagactttttaaatggctttgagcaaaatgctgataatgatatgggcaatgaaatctgggctgaggtggtctcagatggagaggaggaatttgttgggaactggagcaaaggtgacttttgctatattttagcaaagatactggcagcattttgcccctgacctagagacttgtggaactttga
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183778078 217 + 184069350 aggaaatgtgggaatatttggaaccccctagtggagactttttaaatggctttgagcaaaatgctgatagtgatatgggcaatgcaatctaggctgaggtggtctcagatggagaggaggaacttgttgggaactggagaaaaggtgactcttgttacattttagcaaagatactggcagcattttgcccctgacctagagatttgtggaactttga
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189171340 217 + 189454096 aggaaatgtgggaatatttggaaccccctagtggagactttttaaatggctttgagcaaaatgctgatagtgatatgggcaatgcaatctaggctgaggtggtctcagatggagaggagggacttgttgggaactggagaaaaggtgactcttgttacattttagcaaagatactggcagcattttgcccctgacctagagatttgtggaactttga
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178590284 217 + 178775436 aggaaatgtGGGAATATTTGGGACCCCCTAGTGGAGACTTTTTAAATGGCTTTgagcaaaatgctgatagtgatatgggcaatgcaatctaggctgaggtggtctcagatggagaggaggaacttgttgggaactggagaaaaggtgactcttgttacattttagcaaagatactggcagcattttgcccctgacctagagatttgtggaactttga
i papAnu2.chr5             C 0 I 55
s chlSab2.chr7             135525463 217 + 135778131 aggaaatgtgggaatatttggaaccccctagtggagactttttaaatggctttgagcaaaatcctgataataatatcggcaatgcaatctaagctaaggtggtctcagatggagaggaggaacttgttgggaactggagaaaaggtgactcttgttacattttagcaaagatactggcagcattttgtccctgacctagagatttgtggaacttcga
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190630422 213 - 190850796 aggaaatgtgggaaggtttggaactccatagcagagacttgttgaatgac--tgagcaaaattccaatgatgacatgaacaatgaaatctaggctgaggtggtctcagatggagatgagaaacttgttgcaaactggagcaaaagtgactc--attatattttagcaaaaaggctggcagtattttgcccttgtcctagagatttgtggaactttca
i calJac3.chr3             I 3743 C 0
e mm10.chr8                 87777738 6268 - 129401213 I
e canFam3.chr16             18073696   7 -  59632846 I

a score=461535.000000
s hg38.chr4_KI270925v1_alt    401693 205 +    555799 acttgagagagatgatttagggtatttggcagaagaaatttctaaacagcaaagcattcaaggtgtgacttgggtgctgttaaaagtgttcagttttaaaagggaaacagagcataaaagtttgacaaatttgcagcctgacaatgtgatagaaattaaaatcccattttctaaggagaaattcaagttggctgcataaattttc
s panTro4.chr4             193114614 205 + 193495092 acttgagagagacgatttagggtattgggcagaagaaatttctaaacagcaaagcattcaaggtgtgacttgggtgctgttaaaggtgttcagttttaaaagggaaacagagcataaaagtttgacaaatttgcagcctgacaatgtgatagaaaataaaatcccattttctaaggagaaattcaagctggctgcagaaatttgc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198187805 205 + 198332218 acttgagagagatgatttagggtatttggcagaagaaatttctaaacagcaaagcattcaagagatgacttaggtgctgttaaaagtgtacagttttaaaagggaaacagagcataaaagtttgacaaatttgcagcctgacaatgcgatagaaaataaaatcccattttctaaggagcaattcaagccagctgcagaaatttgc
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113861904 205 + 115148730 acttgagagagatgatttagggtatttggcagaagaaatttctaaacagcaaagcattcaagaggtgacttgggtgctgttaaaggtgttcagttttaaaagggaaacaaagcataaaagtttgacaaatttgcagcctgacaatgcgatagaaaataaaatcccattttctaaggagcaattcaagtaggctgcagaaatttgc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183778295 203 + 184069350 tcttgggagagataatttagggtacttggcagaagaaatttctaaacagcaaagcattcaagaggtgacttaggtgctgttaaaggtgttcagttttaaaagggaaac--agcataaaagtttgacaaatttgcagcctgacaatgtgatagaaaataaaatcccattgtctaaggagaaattcaagctggctgcagaaatttgt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189171557 203 + 189454096 tcttgggagagataatttagggtacttggcagaagaaatttctaaacagcaaagcattcaagaggtgacttaggtgctgttaaaggtgttcagttttaaaagggaaac--agcataaaagtttgacaaatttgcagcctgacaatgtgatagaaaataaaatcccattgtctaagaagaaattcaagctggctgcagaaatttgt
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135525680 203 + 135778131 tcttgggagagataatttagggtacttggcagaagaaatttctaaacagcaaagcattcaagaggtgacttaggtgctgttaaaggtgttcagttttaaaagggaaac--agcataaaagtttgtcaaatttgcagcctgacaatgtgatagaaaataaaatcccattgtctaaggagaaattcaagctggctgcagaaatttgt
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190630635 198 - 190850796 acttgagagagatgatttagggt-------ggaacaaatttctaagcagcaaagcattcaagaggtgacttgggttctgttaaagatattcagttttaaaaagattacagagcataaaaatttgaaaaatatgcagcctgacaatgtgatagaaaataaagtcctattttctgagaagaaattcaagctggctgcagaaatttgc
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87777738 6268 - 129401213 I
e canFam3.chr16             18073696   7 -  59632846 I
e papAnu2.chr5             178590501  55 + 178775436 I

a score=3948172.000000
s hg38.chr4_KI270925v1_alt    401898 1384 +    555799  
s panTro4.chr4             193114819 1383 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198188010 1380 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113862109 1383 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183778498 1372 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189171760 1428 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178590556 1427 + 178775436  
i papAnu2.chr5             I 55 C 0
s chlSab2.chr7             135525883 1371 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190630833 1262 - 190850796  
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87777738 6268 - 129401213 I
e canFam3.chr16             18073696    7 -  59632846 I

a score=196404.000000
s hg38.chr4_KI270925v1_alt    403282 55 +    555799 ccccaagggacacttgtcaatctctagagacatttatggttgtggcatcctggag-
s panTro4.chr4             193116202 55 + 193495092 ccccaagggacacttgtcaatctctagagacatttattgttgtggcatcctggag-
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198189390 55 + 198332218 ccccaagggacacttgccaatctctagagacatttatggttgtggcatcctggag-
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113863492 55 + 115148730 ccccaagggacacttgtcaatgtctagagacatttatggttgtggcatcctggag-
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183779870 55 + 184069350 ccccaagggacacttgtcaatctctagagacatttatggttgtggcatcctggag-
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189173188 55 + 189454096 ccccaagggacacttgtcaatctctagagacatttatggttgtggcatcctggag-
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178591983 55 + 178775436 CCCCAAGGGACACTTGTCAATCTCTAGAGACATTTATGGTTGTGGCATCCTGGAG-
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135527254 55 + 135778131 ccccaggggacacttgtcaatctctagagacatttctggttgtggcatcctggag-
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190632095 55 - 190850796 ctccaagggacacttgtcaatctctagaggcatttatggttgtggcatcctggat-
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18073703 56 -  59632846 ccccaggggacatttgacaatatctgaagacatttttctttgtggacaagtggaaa
i canFam3.chr16            I 7 C 0
e mm10.chr8                 87777738 6268 - 129401213 I

a score=907924.000000
s hg38.chr4_KI270925v1_alt    403337 263 +    555799 ggatactactggcatctagcagggacagtcctgaaatgctgctaagcgtcttataatatatcagagcccaccacaccaaagaattatccagcccaaaagccagtagtctcaagactggtaaaTTATGGTCTAAAGGGACTTTTAATTTTCTAATTGGCTAGCTGGCTAAGTAACAGATATTTTCCTCCAAAACGC-TTAAGGAAAATGATTAGCAAATTCCAAGGACTACTGCCACTAAAATGTTGAGTACAATAAAGAATTGC
s panTro4.chr4             193116257 263 + 193495092 ggatactactggcatctagcagggacagtcctggaatgctgctaagcatcttacaatatatcagagcccaccacaccaaagaattatccagcccaaaagccagtagtCTCAGGACTGGTAAATTATGGTCTAAAGGGACTTTTAATTTTCTAATTGGCTAGCTGGTTAAGTAACAGATATTTTCCTCCAAAATTC-TTAAGGAAAATGATTAGCAAATTCCAAGGACTGCTGCCACTAAAATGTTCAGTACAATAAAGAATTGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198189445 263 + 198332218 ggacactactggcatctagcagggacagtcctggaatactgctaagcatcttacaatatatcagagcccacgacaccaaagaattattcagcccaaaagccaatagtctcaagactggtaaaTTATGGTCTAAAGGGACTTTTAATTTTAAAATTGGATAGATGGCTAAGTAATAGATATTTTCCTCCAAAACTC-TTAAGGAAAATGATTAGCAAATTCCAAGGACTACTACCACTAAAATGTTGAGTACAATAAAGAATTGT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113863547 263 + 115148730 ggatactactggcatctagcagggacagtcctggaatgctgctaagcatcttataacatttcagagccctccacaccaaagaattatccagcccaaaagccaatagtctcaagactggtaaaTTATGGTCTAAAGAGACTTTTAATTTTCATATTGGCTAGATGGCTAAGTAATAGATATTTTCCTCCAAAACTC-TTAAGGAAAATGATTAGCAAATTCCAAGGACTACTGCCACTGAAATGTTGAGTACAATAAAGAATTGT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183779925 263 + 184069350 ggattctactggcatccagcagaggcagtcctagaatgctgttaagcatctcataatatttcagagccctccacaccaaagatttacccagcccaaaagccaatagtctcaagactggtaaaTAATGGTCTAAAGGGACTTTTAATTTTCAAATTGGCTAGATAGCTAAGTAATAGATATTTTCCTCCAAAACTC-TTAAGGAAAATGATTAGCAAATTCCAAGGACTACTGCCACTAAATTGTTGAGTACAATAAAGAATTGT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189173243 263 + 189454096 ggattctactggcatccagcagagggagtcctagaatgctgttaagcatctcataatatttcagagccctccacaccaaagatttacccagcccaaaagccaatagtctcaagactggtaaaTAATGGTCTAAAGGGACTTTTAATTTTCAAATTGGCTAGATAGCTAAGTAATAGATATTTTCCTCCAAAACTC-TTAAGGAAAATGATTAGCAAATTCCAAGGACTACTGCCACTAAATTGTTGAGTACAATAAAGAATTGT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178592038 263 + 178775436 GGATTCTACTGGCATCCAGCAGAGGGAGTCCTAGAATGCTGTTAAGCATCTTATAATATTTCAGAGCCCTCCACACCAAAGATTCACCCAGTCCAAAAGCCAATAGTCTCAAGACTGGTAAATAATGGTCTAAAGGgacttttaattttcaaattggCTAGATAGCTAAGTAATAGATATTTTCCTCCAAAACTC-TTAAGGAAAATGATTAGCAAATTCCAAGGACTACTGCCACTAAATTGTTGAGTACAATAAAGAATTGT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135527309 263 + 135778131 ggattctactggcatccagcagagggagtcctagaatgctgctaagcatcttataatatttcagagccctccacaccaaagatttacccagcccaaaagccaatagtctcaagactggtaaaTAATAGTCTAAAGGGACTTTCAATTTTCAAATTGGCTAGATAGCTAAGTAATAGATATTTTCCTCCAAAACTC-TTAAGGAAAATGATTAGCAAATTCCAAGGACTACTGCCACTAAATTGTTGAGTACAATAAAGAATTGT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190632150 262 - 190850796 ggttactgctggaatctagtggggacactcctgaaatgctgctaagcacattacaacgcatcagagccctccacgccaaagcagtatcc-tcccaaaagccaataatgacaaggctgataaaTTATGGTCTAAAGGGACCTTTAATTTTTAGATTGACTAGATGGCTAAGTAATATACATTTGCCTCCAAAACTC-TTAAGAAAAATGATTAGCAAATTCCAGGCATTACTGCCACTAAAATGTCGAGTACAATAAAGAATTGT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87784006 253 - 129401213 GGAGAGCACTGGCCTTAAACAGCA--AGTCTCAGGAAGCTGTTGTATATCCAGCAATATACAATATCCAGCT--------GAGTTACCAAGTCCAGCC-TCACCAGTTCCAAAGTGAGACCAACTTTACCTAGAGGAACTTCTCCGTCTTCATATGGCTGAGTTGTTAAGTAGCAAGTATTTTCCTCCAAAACTCTTTAAGGAAAATAATGAGCATACATCAAGGATTGCCCCAACTGAACAGTTGAAAACATTGAAGCCTTGC
i mm10.chr8                I 6268 I 100
s canFam3.chr16             18073759 257 -  59632846 ggatcttactggtacccagtgggtagagttttgtaatgctactaaacatcc-----tatgcaagagccctttacaacaatgaaatatccgactcaaaattcaacaatgccaagattgaaaaatgctTCAGTAAAGGAATTTTCCATTTTCAAATTGCTTAAATAGTTACATAGCAGACATTTTCCTCTGAAACTC-TTAAAGAAAAT-ATTTTCAAATACCAAGGACTATCTCCACTAAAAATTTCGATACAATAAAGGATTTT
i canFam3.chr16            C 0 C 0

a score=1426036.000000
s hg38.chr4_KI270925v1_alt    403600 429 +    555799 CTGGAAGAATCAGATGATAGAATACTTAGGATCCACTGTAGCTATACAGTGCCAAGAAAGCAAAGACGCAGTT--AGACTCATGTTACATCTTAACTTATTCCATTTTGAATAAGTGACTTATCTGACACAG-CAAGGGTCAAATGCATCTGAAAAATACACTGTTAAATGCATGAATTATCAGTAAGTTAGCACTTTAAACAAACACACTGATGGTCTGTTGGCTAACATGATATGGTTCTagtgtgatgtaggtaagtgaatttggggccaggagatagaatctaggagtgtagtcatggctccatctcttgctgactgagtgactctagctaggtc----atatggcttacctgggcttcagtttctgcatc---------------------tgat----aaacgtgaacgcttatatatgtctgttttatctacctcactg-gtcattgtgagaatT
s panTro4.chr4             193116520 429 + 193495092 CCGGAAGAATCAGATGATAGAATACTTAGGATCCACTGTAGCTATACAGTGCCAAGAAAGCAAAGACATGGGT--AGACTCATGCTACATCTTAACTTATTCCATTTTGAATAAGTGACTTATCTGACACAG-CAAGGGTCAAATGCATCTGAAAAATACACTGTTAAATGCATGAATTATCAGTAAGTTAGCACTTTAAACAAACACACTGATGGTCTGTTGGCTAACATGATATGGTTCTagtgtgatgtaggtaagcgaatttggggccaggagatagaatctaggagtgtagtcatggctccatctcttgccaactgagtgactctagctaggtc----atatggcttacctgggcttcagtttctgcatc---------------------tgat----aaacgtgaatgcttatgtatgtctgttttatctacctcactg-gtcattgtgagaatT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198189708 429 + 198332218 CTGGAAGAATCAGATGATGGAATACTTAGGATCCACTGTAGCTACACAGTGCCAAGAAAGCAAAGACCGGGTT--AGACTCATGCTGCATCTTAACTTATTCCATTTTGAATAAGTGACTTATCTGACACAG-CAAGGGTCAAATGCATCTGAAAAATACACTATTAAATGTGTGAATTATCAGTAAGTTAGCACTTTAAACAAACACACTGATGGTCTGTTGGTTAACATGATATGGTTCTagtgtgatgtaggtaagagaatttggggccagaagatagaatctaggagtgtagtcatggctccatcccttgccaactgagtgactctagctaggcc----atatggcttacctgggcttcagtttctgcatc---------------------tgat----aaacgtgaacgcttatgtatgtctgttttatctacctcactg-gtcattgtaagaatT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113863810 428 + 115148730 CTGGAAGAATCAGATGATAGAATACTTAGGATCCACTGTAGCTACACAGTGCCAAGAAAGCAAAGACAGAGTT--AGACTCATGCTACATCTTAACTTATTCCATTTTGAATAAGTGACTTATCTGATACAG-CAAGGGTCAAATGCTTCTGAAAAATACACTGTTAGATGCATGAATTATCAGTAAGTTAGCACTTTAAACAAACACACTGATGATCTGTTGGCTAACATGCTATGGTTCTagtgtgatgtaggtaagagaatttggggccaggagatagaatctaggagcgtagtcatggctccatctcttgatgactgagtgactctagctaggtc----atatggcttacctgggcttcagtttctgcacc---------------------tgat----aaacatgaacacttatgtatgtctgttttatctacctcactg-gtcattgtgagaa-t
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183780188 431 + 184069350 CTGGAAGAATCAGATGATAGAATACTTAGCATCCACTGTGGCTACACAGTGCCAAGAAAGCAAAGACAGAGTTAAAGACTCATGCTACATCTTAACTTATTCCATTTTGAATACGTGGCTTATCTGACACAG-TAAGGTTCAAATGCATCTGAAAAATACACTGTTAAATGCATGAATTATCAATACGTTAGCACTTTAAACAAACACACTGATGGTCTGTTGGCTAACATGATATGGTTCTaatgtgatgtaggtaagagaatttggaggtaggagatagaatctaggagtgtagtcatggctctatctcttgccgactgagtgactctagctaggtc----atatagcttacctggacttcagtttctgcatc---------------------tgat----aaacgtgaatgcttatgtatgtctgttttatctacctcactg-gtcattgagagaatT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189173506 431 + 189454096 CTGGAAGAATCAGATGATAGAATACTTAGCATCCACTGTGGCTACACAGTGCCAAGAAAGCAAAGACAGAGTTAAAGACTCATGCTACATCTTAACTTATTCCATTTTGAATACGTGGCTTATCTGACACAG-CAAGGTTCAAATGCATCTGAAAAATACACTGTTAAATGCATGAATTATCAATAAGTTAGCACTTTAAACAAACACACTGATGGTCTGTTGGCTAACATGATATGGTTCTaatgtgatgtaggtaagagaatttggaggtaggagatagaatctaggagtgtagtcatggctctatctcttgccgactgagtgactctagctaggtc----atatagcttacctggacttcagtttctgcatc---------------------tgat----aaacgtgaatgcttatgtatgtctgttttatctacctcactg-gtcattgagagaatT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178592301 431 + 178775436 CTGGAAGAATCAGATGATAGAATACTTAGCATCCACTGTGGCTACACAGTGCCAAGAAAGCAAAGACAGAGTTAAAGACTCATGCTACATCTTAACTTACTCCATTTTGAATACGTGACTTATCTGACACAG-CAAGGTTCAAATGCATCTGAAAAATACACTGTTAAATGCATGAATTATCAATAAGTTAGCACTCTAAACAAACACACTGATGGTCTGTTGGCTAACATGATATGGTTCTAATGTGATGTAGGTAAGAGAATTTGGAGGTAGGAGATAGAATCTAGGAGTGTAGTCATGGCTCCATCTCTTGCCGACTGAGTGACTCTAGCTAGGTC----ATATAGCTTACCTGGACTTCAGATTCTGCATC---------------------TGAT----AAACGTGAATGCTTATGTATGTCTGTTTTATCTACCTCACTG-GTCACtgacagaatt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135527572 431 + 135778131 CTGGAAGAATCAGATGATAGAATACTTAGGATCCACTGTAGCTACACAGTGCCAAGAAAGCAAAGACAGAGTTAAAGACTCATGCTACATCTTAACTTATTCCATTTTGAATAAGTGACTTATCTGACACAG-CAAGGTTCAAATGCATCTGAAAAATACACTGTTAAATGCATGAATTATCAATAAGTTAGCACTTCAAACAAACACACTGATGGTCTGTTGGCTAACATGATATGGTTCTaatgtgatgtaggtaagagaatttggaggcaggagatagaatctaggagtgtagtcatggctccatctcttgccgactgagtgactctagctaggtc----atatagcttacctggacttcagtttctgcatc---------------------tgat----aaacatgaatgcttatgtatgtctgttttatctacctcactg-gtcattgagagaatT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190632412 404 - 190850796 TTGGAAGAATCAGATGACTGAATACAGAGGATCCTCTGTAGCCACACAGCGCCAAGAAAGCAAAGCTAGAGTTAAAGACTCATGCTACATCTTAACTTATTCCATTTTGAGTAAGTTACTTATGTGACACAG-CAAGGGTCAAATACATCTGAAAAATACATTGTTAAATGCATGAATTATCAATAAGTTATCACTTTAAACAAACACATTGATGGTCTGTTGGCTAACATAATATGGCTCTAGTTTGATGTAGGTAAAAGAATTTGGGGCGAGGAGACAGAATCTAGGACTGTAGTCATGGTTc---------------------------ctagggc----atatggcttacctgggctccagtttctgcatt---------------------tgat----aaatgtcaatgctaatgtatgtctgttctatctacctcgctg-gtcattgtgagaatT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18074016 436 -  59632846 ATGGAAGAATCAGATGGCAAAATATGAAAGATCCTCTGGAGCTACAAAACACCAAGAAAACAAAGGCAGAGTTAAAGGCTCATGGTGCACCTTAACTGATTCTGTTGTGA----GTTATTTATGTGACACTGCCAATGCTTAAATAGATCATAAAAAT----TGTTAAGTAAGTGGATTATCATTGAGTTTGCATCTTAAA-----ACAAGAATGTTCTTCTGGCTAACATAAT-----TCTagtgtgatgcagctaagagaatttgaggacaggagatagaagctaggagtctagacagggctccatcttt----acctgactgactctgggcaagtcatatatatagctttcctgggctctagttcccccatctataaactttcctctcaaagttgataataaaatgtgaatgcta----gtgcctgtcttatctacatcacagagttattttgagaaCT
i canFam3.chr16            C 0 I 182
e mm10.chr8                 87784259 100 - 129401213 I

a score=957094.000000
s hg38.chr4_KI270925v1_alt    404029 337 +    555799 CTTTTTTTAAGTACACTTTCTCT----TTATTTGAGTATTGATATATTCTCATAT-TTTTTTATACTCCTCATATATGGTTTTGGAAATAACAATGTATTTGGAAGACCAAGGAAAAGTAGATTCCTCCAGGGAGGAGGCTTCACACCCCCATGTAGAGACATGATTGGGCTCCTATAATTAACTAACTTC-TCTCCTCT-CATATGTCTCATTAGAGTGTAAAAATAGATTTTTAAA-AGTATCATagacaagccacagacttgtagaaaatattttcaaaatgcatatctga-taaaaaatgtgtatctaaaatgtacaaagaactcttaaaattcaacaataa
s panTro4.chr4             193116949 339 + 193495092 CTTTTTTTAAGTACACTTTCTCT----TTATCTGAGTATTGATATATTCTCATATCTTTTTTATACTCCTCATATATGGTTTTGGAAATAACAATGTATTTGGAAGACCAAGGAAAAGTAGATTCCTCCAGGGAGGACGCTTCACACCCCCATGTAGAGACATGATTGAGCTCCTATAATTAACTAACTTC-TTTCCTCTTCATATGTCTCATTAGAGTGTGAAAATAGATTTTTAAA-AGTATCATagacaagtcacagacgtgtagaaaatattttcaaaatgcatatctga-taaaaaatgtatatctaaaatgtacaaagaactcttaaaattcaacaataa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198190137 338 + 198332218 CTTTTTTTAAGTACACTTTCTCT----TTACTTGAGTATTGATATATTCTCATATCTTTTTTATACTCCTCATATATGGTTTTGGAAATAACAATGTATTTGGAAGACCAAGGAAAAGTAGATTCCTCAAGGGAGGAGGCTGCACACCCCCACGTAGAGACATGATTGGGCTCCTGTAATTAACTAACTTC-TTTCCTCTTCATGTGTCTCATTAGAAtgtgaaaatacatttttaaa-agtatcatagacaagccacagacttgtag-aaatattttcaaaatgcatatctga-taaaaaatgtgtatctaaaatgtacaaagaactcttaaaattcaatgataa
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113864238 339 + 115148730 cCTTTTTTAAGTACACTTTCTCT----TTATTTGAGTATGAATATATTCTCATATCTTTTTTATACTCCTCATATATGGTTTTGGAAATAACAATGTATTTGGAAGACCAAGGAAATGTATATTCCTCAAGGGAGGAGGCTGCACACCCCCATGTAGAGACATGATTGGGCTCCTATAATTAACTAACTTC-TTTCCTCTTCATATGTCTCATTAGAGtgtgaaaatacatttttaaa-agtatcatagacaagccacagacttgtagaaaatattttcgaaatgcatatctga-taaaaaatgtgtatctaaaatctacaaagaactcttaaaattcaacaataa
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183780619 335 + 184069350 CTTTTTTTAAGTACACTTTCTC--------TTTGACTATTGATATATTCTCATATCTTTTTTATACTCCTCATATATGGTTTTGGAAATAACAATGTATCTGGAAGACAAACGAAAAGTAGATTCCTCAAGGGAGGAGGCTGCACACCCCCATGTAGAGACATGATTGGGCTCCGAT-ATTAACTAATCTC-TTTCCTCTTCATATGTCTCATTAGAGTGTGAAAATACATTTTTGAA-AGTACCATagacaagccacagacttgtagaaaatattttcaaaatgcatatctgattaaaacatgtgtatccaaaatgtacaaagaactcttaaaattcaacaataa
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189173937 335 + 189454096 CTTTTTTTAAGTACACTTTCTC--------TTTGACTATTGATATATTCTCATATCTTTTTTATACTCCTCATATATGGTTTTTGAAATAACAATGTATCTGGAAGACAAACGAAAAGTAGATTCCTCAAGGGAGGAGGCTGCACACCCCCATGTAGAGACATGATTGGGCTCCGAT-ATTAACTAATCTC-TTTCCTCTTCATATGTCTCATTAGAGTGTGAAAATACATTTTTGAA-AGCACCATagacaagccacagatttgtagaaaatattttcaaaatgcatatctgattaaaacatgtgtatccaaaatgtacaaagaactcttaaaattcaacaataa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178592732 339 + 178775436 ctttttttaagtacACTTTCTCT----TTATTTGACTATTGATATATTCTCATATCTTTTTTATACTCCTCATATATGGTTTTGGAAATAACAATGTAtctggaagacaaaggaaaagtaGATTCCTCAAGGGAGGAGGCTACACACCCCCATGTAGAGACATGATTGGGCTCCGAT-ATTAACTAATCTC-TTTCCTCTTCATATGTCTCATTAGAgtgtgaaaatacatttttgaa-agtaCCATAGATAAGCCACAgacttgttgaaaatattttcaaaatgcatatCTGATTAAAACAtgtgtatccaaaatatacaaagaactcttaaaattcaacaataa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135528003 337 + 135778131 CTTTTTTTAAGTACACTTTCTCT----TTATTTGACTATTGATATATTCTCATATCTTTTT--TACTTCTCATATATGGTTTTGGAAATAACAATGTATCTGGAAGACAAAGGAAAAGGAGACTCCTCAAGGGAGGAGGCTGCACACCCCCACGCAGAGACATGATTGGGCTCCGAT-ATTGACTAATCTC-TTTCCTCTTCATATGTCTCATTAGAGTGTGAAAATACATTTTTGAA-AGTACCATagaccagccacagacttgtagaaaatattttcaaaatgcatatctgattaaaacatgtgtatccaaaatgtacaaagaactcttaaaattcaacaataa
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190632816 220 - 190850796 CTTTTGTAAAGTACAATTTCTCT----TTATTTGGGTATTGATATATTCTCATATCTTTCTTATACTCCTTATATACAGTTTTAGACATAACAAAGTATATGGAAGACCAAGGAAAAGCAGATTCCTAAA---AGGAGGTTGCACACCCCCATGTAGAGACACGATTGGGTtcctataattaactaact-----------------------------------------------------------------------------------------------------------------------tccaacatatacaaagaacttgtaaaattcaacgttaa
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18074634 340 -  59632846 TTTTTTTTTAATGTACTTTCCTTTTACTTATTTGAGTACTGATATCTTATTATATCTTCTT-ACACTTCATATATAAGATTTTGTAAAGAACAGTGCCTTTGGAAGACTAATGAAAAGTAGATTGCTAGAGAGAGAAGGTTGAACAATCCCA--TAGAGATACTATTGAGCTCTTCAAATTGATTAATTTCTTTTCCTCTTAAAAGGTCCCATTGGAGTGCAAAAACACATTGAAAAACAAAATCACATacaagccaca-actgggagaaaa-atttgtaaaacacaaacctga-taaggaacttacacctaaaacatacatagcattcttaaaatgcagcaataa
i canFam3.chr16            I 182 I 4206
e mm10.chr8                 87784259 100 - 129401213 I

a score=2904794.000000
s hg38.chr4_KI270925v1_alt    404366 1050 +    555799  
s panTro4.chr4             193117288 1064 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198190475 1058 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113864577 1056 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183780954 1050 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189174272 1035 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178593071 1070 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135528340 1050 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190633036 1093 - 190850796  
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87784259  100 - 129401213 I
e canFam3.chr16             18074974 4206 -  59632846 I

a score=473861.000000
s hg38.chr4_KI270925v1_alt    405416 156 +    555799 TGGTTTAAACTGTTATTGCACTTTGT---GAGCATTTGGTTTTTCTAACAGAAGATGGAACTAGAAGACA-CACCTTTAGATTTGCTCAGTAGTTTACCCTGGGGCAGCTGGTACCACCCCTCTGTCATTAGCCATTTAGGAAAGCTAGGAGAAAAGTGT
s panTro4.chr4             193118352 156 + 193495092 TGGTTTAAACTGTTATTGCACTTTGT---GAGCATTTGGTTTTTCTAACAGAAGATGGAACTAGAAGACA-CACCTTTAGATTTGCTCAGTAGTTTACCCTGGGGCAGCTGGTACCACCCCTCTGTCATTAACCATTTAGGAAAGCTAGGAGAAAAGTGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198191533 155 + 198332218 TAGTTTAAACTGTTATTGCACTTTGT---GAGCATTTGGTTTTTCTAACAGGAGATGG-ACTAGGAGACA-AAACTTTAGATTTGCTCAGCAGTTTACCCTGGGGCAGCTGGTACCACCCCTCAGTCATTAGCCATTTAGGAAATCTAAGAGAAAAGTGT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113865633 155 + 115148730 TGGTTTAAACTGTTATTGCACTTTGT---GAGCATTTGGTTTTTCTAACAGAAGATGGGACTAGAAGACA--ACCTTTAGATTTGCTCAGCAGTTTACCCTGGGGCAGCCGGTACCACCCCCCAGTCATTAGCCATTTAGGAAAGCTAAGAGAAAAGTGC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183782004 155 + 184069350 TGGTTTAAACTGTTATTGCACTTTGT---GAACATTTGGTTTTTCTAACAGAAGATGGGAAAGGAAGACA-AACGTTTAGATTTGCTCAGTAGTTTACCCTGGGGCAGCCGGTACCACCCCTCGGTCATTAG-GATTTAGGGCAGCTAAGAGAAAAGTGT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189175307 155 + 189454096 TGGTTTAAACTGTTATTGCACTTTGT---GAACATTTGGTTTTTCTAACAGAAGATGGGAAAGGAAGACA-AACGTTTAGATTTGCTCAGTAGTTTACCCTGGGGCAGCCGGTACCACCCCTCGGTCATTAG-GATTTAGGGCAGCTAAGAGAAAAGTGT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178594141 155 + 178775436 TGGTTTAAACGGTTATTGCACTTTGT---GAACATTTGGTTTTTCTAACAGAAGATGGGAACGGAAGACA-AACCTTTAGATTTGCTCAGTAGTTTACCCTGGGGCAGCCGGTACCACCCCTCGGTCATTAG-GATTTAGGGCAGCTAAGAGAAAAGTGT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135529390 155 + 135778131 TGGTTTAAACTGTTATTGCACTTTGT---GAACATTTGGTTTTTCTAACAGAAGATGGGAACGGAAGACA-AACCTTTAGATTTGCTCAGTAGTTTACCTTGGGGCAGCCGGTACCACCCCTCGGTCATTAG-GATTTAGGGCAGCTAAGAGAAAAGTGT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190634129 147 - 190850796 TGGTTTAAACTGTCATCGCCCCTTGT---GAGCATTTGGCTTTTCCAACAGAATATGAGACTGGAAGATA-AATCTTTAGATTTGCTCAGTAGTTTACCCTGGGGCAGCTGGTACCGCCCAC--GTCATTAGCCAGTTAGGAAAGGTAAGAGA-------
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18079180 157 -  59632846 TGGATTAAACTATAACTGCACTTTTTCACAAGCATCTGGTTTTAC-AAAAGAAGAAGAGACCAGAAGACTTAATTTTGAAATTTGCTCAGTAGACTACCCTAGGGCAGCTAGAGCCCTCATTCACTCATCAGCCACTTAT--AAACTAACAGAAAGGCAT
i canFam3.chr16            I 4206 I 626
e mm10.chr8                 87784259 100 - 129401213 I

a score=329955.000000
s hg38.chr4_KI270925v1_alt    405572 127 +    555799 CATTGTTTAATTACATGTCAGAGGACAATGAGCGTCACAGAGTGCATGTGGAGTATGTTGGAAAATGTTTCCTTCCACACAGTGAGCCTGA---------TATATCTCTCTAATAAAGGGCAAATGGAGAAGGACT
s panTro4.chr4             193118508 127 + 193495092 CAATGTTTAATTACATGTCAGAGGACAATGAATGTCACAGAGTGCATGTGGAGTACATTGGAAAATGTTTTCTTCCACACAGTGAGCCTGA---------TATATCTCTCTAATAAAGGGCAAATGGAGAAGGACT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198191688 127 + 198332218 CAGTGTTTACCTGCATGTCAGAGCACAATGAGCATCACAGAGTGCATGTGGAGTACATTGGAAAATGTTTCCTTCCACACAGTGAACCTGA---------TATATCTCTCAAATAAAGGGAAAAAAGAGAAGGACT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113865788 127 + 115148730 CAGTGTTTAACTGCATGTCAGAGCACAATGCGCGTCACAGAGTGCACGTGGAGTACGTTGGAAAATGTTTCCTTCCACACAGTGAGCCTGA---------TATATCTCTCTACTAAAGGGCAAATGGAGAAGGACG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183782159 127 + 184069350 CAGCGTTTAACTACGTGTCAGAGCACAACAAGCTTCACACAGTGCATGTGGAGGGTGTTGGAAAATGTTTCCTTCCACACAGGGAGCTCAA---------TATATCTCTCTAATAAAGGGCAAATGGAAAAGGACC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189175462 127 + 189454096 CAGCGTTTAACTACGTGTCAGAGCACAACAAGCTTCACACAGTGCATGTGGAGGGTGTTGGAAAATGTTTCCTTCCACACAGGGAGCTCAA---------TATATCTCTCTAATAAAGGGCAAATGGAAAAGGACC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178594296 127 + 178775436 CAGCGTTTAACTACGTGTCAGAGCACAACAAGCTTCACACAGTGCATGTGGAGGGTGTTGGAAAATGTTTCCTGCCACACAGGGAGCCCGA---------TATATCTCTCTAATAAAGGGCAAATGGAAAAGGACC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135529545 127 + 135778131 CAGCGTTTAACTACGTGTCAGAGCACAACAAGCTTCACACAGTGCATGTGGAGGGTGTTGGAAAATGTTTCCTTCCACACAGGGAGCCCGA---------TATATCTCTCTAATAAAGGGCAAATGGAAAAGGACC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190634276 135 - 190850796 -AGTGTTTAACCACACGGCAGAGCACAGGGAGCTTCACAGAGTGCACATGGAATATGCTGGAAAAGGTTTCCTTCTCCAGAGCGGGCCTGATTTCTATTTTCTACCTTTCTAATAAAGGGAAAATGGGAAAGGGCC
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87784259 100 - 129401213 I
e canFam3.chr16             18079337 626 -  59632846 I

a score=2548.000000
s hg38.chr4_KI270925v1_alt    405699 1 +    555799 T
s panTro4.chr4             193118635 1 + 193495092 T
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198191815 1 + 198332218 T
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113865915 1 + 115148730 T
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183782286 1 + 184069350 T
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189175589 1 + 189454096 T
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178594423 1 + 178775436 T
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135529672 1 + 135778131 T
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87784259 100 - 129401213 I
e canFam3.chr16             18079337 626 -  59632846 I
e calJac3.chr3             190634411 0 - 190850796 C

a score=8550.000000
s hg38.chr4_KI270925v1_alt    405700 5 +    555799 CCATC
s panTro4.chr4             193118636 5 + 193495092 CCATC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198191816 5 + 198332218 CCATT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113865916 5 + 115148730 CTATC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183782287 5 + 184069350 CCATC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189175590 5 + 189454096 CCATC
i macFas5.chr5             C 0 T 5
s papAnu2.chr5             178594424 5 + 178775436 CCATC
i papAnu2.chr5             C 0 T 5
e mm10.chr8                 87784259 100 - 129401213 I
e canFam3.chr16             18079337 626 -  59632846 I
e calJac3.chr3             190634411 0 - 190850796 C
e chlSab2.chr7             135529673 0 + 135778131 C

a score=-1080.000000
s hg38.chr4_KI270925v1_alt    405705 1 +    555799 -C
s panTro4.chr4             193118641 1 + 193495092 -C
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198191821 1 + 198332218 -C
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183782292 1 + 184069350 G-
i rheMac3.chr5             C 0 C 0
e mm10.chr8                 87784259 100 - 129401213 I
e canFam3.chr16             18079337 626 -  59632846 I
e calJac3.chr3             190634411 0 - 190850796 C
e chlSab2.chr7             135529673 0 + 135778131 C
e papAnu2.chr5             178594429 5 + 178775436 T
e macFas5.chr5             189175595 5 + 189454096 T
e nomLeu3.chr7b            113865921 0 + 115148730 C

a score=31667.000000
s hg38.chr4_KI270925v1_alt    405706 132 +    555799 CTGTCACTGAGTATGTACCACCAGGGCTGTCAGCTGTGGACCATCCCCATCACTGAGTATAGGCCACTAGTGTTGTCAGCTGTGGACCATCCCTGTCACTGAGTATGGGCCACCAGGTTTTGTCAGCTGTGG
s panTro4.chr4             193118642 131 + 193495092 CTGTCACTGAGTATGGACCACCAGGGTTGTCAGCTGTGGACCATCCCCATCACTGAGTATAGGCCACTAGTGTTGTCAGCTGTGGACCATCCCTGTCACTGAGTATGGGCCACCAGGTTT-GTCAGCTGTGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198191822 131 + 198332218 CTGTCACTGAGTATGGGCCACCAGCGTTGTCGGCTGTGGACCATCCCTGTCACTGAATATGGACCACTAGTGTTGTCAGCTGTGGACAATCCCTGTCACTGAATATGAGCCACTAGTGTT-GTCGGCTGTGG
i ponAbe2.chr4             C 0 C 0
e mm10.chr8                 87784259 100 - 129401213 I
e canFam3.chr16             18079337 626 -  59632846 I
e calJac3.chr3             190634411   0 - 190850796 C
e chlSab2.chr7             135529673   0 + 135778131 C
e papAnu2.chr5             178594429   5 + 178775436 T
e macFas5.chr5             189175595   5 + 189454096 T
e rheMac3.chr5             183782293   0 + 184069350 C
e nomLeu3.chr7b            113865921   0 + 115148730 C

a score=546.000000
s hg38.chr4_KI270925v1_alt    405838 1 +    555799 A
s panTro4.chr4             193118773 1 + 193495092 A
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198191953 1 + 198332218 A
i ponAbe2.chr4             C 0 C 0
s calJac3.chr3             190634411 1 - 190850796 A
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87784259 100 - 129401213 I
e canFam3.chr16             18079337 626 -  59632846 I
e chlSab2.chr7             135529673 0 + 135778131 C
e papAnu2.chr5             178594429 5 + 178775436 T
e macFas5.chr5             189175595 5 + 189454096 T
e rheMac3.chr5             183782293 0 + 184069350 C
e nomLeu3.chr7b            113865921 0 + 115148730 C

a score=49357.000000
s hg38.chr4_KI270925v1_alt    405839 44 +    555799 CCATCCCTGTCACTGAGTATGGGCCACCAGGTTTGTCAGCTGTG
s panTro4.chr4             193118774 44 + 193495092 CCATCCCTGTCACTGAGTATGGGCCACCAGGTTTGTCAGCAGTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198191954 44 + 198332218 CCATCCCTGTCACTGAATATGGGCCACTAGTGTTGTCGGCTGTG
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189175590 44 + 189454096 CCATCGCTGTCACTGAGTGTGGGCCACCAAGGCTGTCAGCTGTG
i macFas5.chr5             T 5 T 38
s papAnu2.chr5             178594424 44 + 178775436 CCATCGCTGTCACTGAGTGTGGGCCACCAAGGCTGTCAGCTGTG
i papAnu2.chr5             T 5 T 38
s calJac3.chr3             190634412 44 - 190850796 CTGTCCCTGTCACTGAGTATGGATCACCAGGATTGTCAACTGTG
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87784259 100 - 129401213 I
e canFam3.chr16             18079337 626 -  59632846 I
e chlSab2.chr7             135529673  0 + 135778131 C
e rheMac3.chr5             183782293  0 + 184069350 C
e nomLeu3.chr7b            113865921  0 + 115148730 C

a score=600.000000
s hg38.chr4_KI270925v1_alt    405883 1 +    555799 G
s panTro4.chr4             193118818 1 + 193495092 G
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198191998 1 + 198332218 G
i ponAbe2.chr4             C 0 C 0
s calJac3.chr3             190634456 1 - 190850796 G
i calJac3.chr3             C 0 T 46
e mm10.chr8                 87784259 100 - 129401213 I
e canFam3.chr16             18079337 626 -  59632846 I
e chlSab2.chr7             135529673 0 + 135778131 C
e papAnu2.chr5             178594468 38 + 178775436 T
e macFas5.chr5             189175634 38 + 189454096 T
e rheMac3.chr5             183782293 0 + 184069350 C
e nomLeu3.chr7b            113865921 0 + 115148730 C

a score=546.000000
s hg38.chr4_KI270925v1_alt    405884 1 +    555799 A
s panTro4.chr4             193118819 1 + 193495092 A
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198191999 1 + 198332218 A
i ponAbe2.chr4             C 0 C 0
s calJac3.chr3             190634411 1 - 190850796 A
i calJac3.chr3             T 46 C 0
e mm10.chr8                 87784259 100 - 129401213 I
e canFam3.chr16             18079337 626 -  59632846 I
e chlSab2.chr7             135529673 0 + 135778131 C
e papAnu2.chr5             178594468 38 + 178775436 T
e macFas5.chr5             189175634 38 + 189454096 T
e rheMac3.chr5             183782293 0 + 184069350 C
e nomLeu3.chr7b            113865921 0 + 115148730 C

a score=2507.000000
s hg38.chr4_KI270925v1_alt    405885 5 +    555799 CCATT
s panTro4.chr4             193118820 5 + 193495092 CCATC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198192000 5 + 198332218 CTGTC
i ponAbe2.chr4             C 0 C 0
s chlSab2.chr7             135529673 5 + 135778131 CCATT
i chlSab2.chr7             C 0 I 1
s calJac3.chr3             190634412 5 - 190850796 CTGTC
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87784259 100 - 129401213 I
e canFam3.chr16             18079337 626 -  59632846 I
e papAnu2.chr5             178594468 38 + 178775436 T
e macFas5.chr5             189175634 38 + 189454096 T
e rheMac3.chr5             183782293 0 + 184069350 C
e nomLeu3.chr7b            113865921 0 + 115148730 C

a score=144.000000
s hg38.chr4_KI270925v1_alt    405890 1 +    555799 C
s panTro4.chr4             193118825 1 + 193495092 C
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198192005 1 + 198332218 C
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113865921 1 + 115148730 A
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190634417 1 - 190850796 C
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87784259 100 - 129401213 I
e canFam3.chr16             18079337 626 -  59632846 I
e chlSab2.chr7             135529678 1 + 135778131 I
e papAnu2.chr5             178594468 38 + 178775436 T
e macFas5.chr5             189175634 38 + 189454096 T
e rheMac3.chr5             183782293 0 + 184069350 C

a score=15328.000000
s hg38.chr4_KI270925v1_alt    405891 5 +    555799 CTGTC
s panTro4.chr4             193118826 5 + 193495092 CTGTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198192006 5 + 198332218 CTGTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113865922 5 + 115148730 CCATC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183782293 5 + 184069350 CTGTC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189175596 5 + 189454096 CTGTC
i macFas5.chr5             T 38 C 0
s papAnu2.chr5             178594430 5 + 178775436 CTGTC
i papAnu2.chr5             T 38 C 0
s chlSab2.chr7             135529679 5 + 135778131 CTGTC
i chlSab2.chr7             I 1 C 0
s calJac3.chr3             190634418 5 - 190850796 CTGTC
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87784259 100 - 129401213 I
e canFam3.chr16             18079337 626 -  59632846 I

a score=1672814.000000
s hg38.chr4_KI270925v1_alt    405896 560 +    555799  
s panTro4.chr4             193118831 546 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198192011 544 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113865927 561 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183782298 550 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189175601 550 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178594435 550 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135529684 550 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190634423 555 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18079963 627 -  59632846  
i canFam3.chr16            I 626 C 0
e mm10.chr8                 87784259 100 - 129401213 I

a score=369075.000000
s hg38.chr4_KI270925v1_alt    406456 124 +    555799 AAACTTCAAggctgggtgcagtggctcatgcctgtaatcctagtactc-----ggccaatgcgggtggatcccttaagctcaggagttcgagatcggcctatgcaacatagtgagaacccatctctata
s panTro4.chr4             193119377 124 + 193495092 AAACTTCAAggctgggcatggtggctcatgcctgtaatcctagtactt-----ggccaatgcgggtggatcccttaagcttaggagttcgagatcagcctatgcaacatagtgagatcccatctctata
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198192555 124 + 198332218 AAACTTCAAggctgggcacggtggctcatgcctgtaatcctagtactc-----agccaacgtgggtggatcccttaagctcaggagttcgagattagcctgtgcaacatagtgagatcccatctccata
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113866488 123 + 115148730 ACACTTCAAggctgggcacagtggctcatgcctgtaatcctagtactc-----ggccaacgtgggtggatcctttaagctcaggagttcaagatcagcctgtgcaacatagtgagatcccatctgtat-
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183782848 124 + 184069350 AAACTTCAAggctgggcacagtggtccatgcctgtaatcctagtactc-----ggccaacgtgggtggatcccttaagctcaggagttcgagatcagcctgtgcaacatagtgagatcccatctctata
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189176151 124 + 189454096 AAACTTCAAggctgggcacagtggcccatgcctgtaatcctagtactc-----ggccaacgtgggtggatcccttaagctcaggagttcgagatcagcctgtgcaacatagtgagatcccatctctata
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178594985 124 + 178775436 AAActtcaaggctgggcacagtggctcatgcctgtaatcctagtactc-----gGCCAACGTGGGTGAATCCcgtaagctcaggagttcaagatcagcctgtgcaacatagtgagatcccatctcttta
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135530234 124 + 135778131 AAACTTCAAggctgggcacggtggctcatgcctgtaatcctagtactc-----agccaacgtgggtggatcccttaagctcaggagttcgagatcagcctgtgcaacatagtgagatcccatctctata
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190634978 129 - 190850796 AATCTTCAAggctggacatggtggctcatgcctgtaatcctagtactttagaaggccaaggtcagtggatgttttaagctcaggagttcgagatcagcctgcgcaacatggtgagatcacatctctata
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87784259 100 - 129401213 I
e canFam3.chr16             18080590   0 -  59632846 C

a score=42859.000000
s hg38.chr4_KI270925v1_alt    406580 13 +    555799 aaagatacaaaaa
s panTro4.chr4             193119501 13 + 193495092 aaagatacaaaaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198192679 13 + 198332218 aaagatacaaaaa
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113866611 13 + 115148730 aaagatacaaaaa
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183782972 13 + 184069350 aaagatacaaaaa
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189176275 13 + 189454096 aaagatacaaaaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178595109 13 + 178775436 aaagaatcaaaaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135530358 13 + 135778131 aaagatacaaaaa
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190635107 13 - 190850796 caagatgcaaaaa
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18080590 13 -  59632846 aacaaaacaaaaa
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87784259 100 - 129401213 I

a score=451244.000000
s hg38.chr4_KI270925v1_alt    406593 149 +    555799 ttagcttggtgtggtggcgtgcacctgtagtcccagctgcacaagaagctgaggtgggaagatggcttgagcctaggaggtggaagttgcagtgagccgagatcgcaccactgcactccagcctgggcaacagagccaggcctgtctca
s panTro4.chr4             193119514 149 + 193495092 ttagcttggtgtggtggtgtgcacctgtagtcccagctgcacaagaagctgaggtgggaagatggcttgagcctaggaggtggaggttgcagtgagccgagatcgcaccactgcactccagcctgggcaacaaagccaggcctgtctca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198192692 149 + 198332218 ttagctgggtgtggtggcatgtacctgtagtcccagctacacaagaagctgaggtgggaagatggcttgagcctaggaggtggaggttgcggtgagctgagatcgcaccactgcactccagcctgggcaacagagccaggtctgtctcg
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113866624 149 + 115148730 ttagctgggtgtggtggtgtgcacctgtagtcccagctacacaagaagctgaggtgggaagatggcttgagcctaggaggtggaggttgtagtgagccaagatcgcaccactgcactccagcttgggcagcagagccaggcctatctca
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183782985 149 + 184069350 ttagctgggtgtggtggcgtgcacctgtagtcccagctacaaaagaagctgaggtcggaagatggcttgagcctagcaggtggaggttgcagtgagccgagatcgcaccactgcactccaacctgggcaacagagccaggcctgcctca
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189176288 149 + 189454096 ttagctgggtgtggtggcgtgcacctgtagtcccagctacaaaagaagctgaggtcggaagatggcttgagcctagcaggtggaggttgcagtgagccgagatcgcaccactgcactccaacctgggcaacagagccaggcctgcctca
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178595122 149 + 178775436 ttagctgggtgtggtggcgtgcacctgtagtcccagctacaaaaGAAGCTGAGGtcggaagatggcttgagcctagcaggtggaggttgcagtgagccgagattgcaccactgcacaccaacctgggcaacagagccaggcctgcctca
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135530371 149 + 135778131 ttagctgggtgtggtggcgtgcacctgtagtcccagctacaaaagaagctgaggtgggaagatggcttgagtctagcaggtggaggttgcagtgagccgagatcgcaccattgcactccaacctgggcaacagagccaggcctgcctca
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190635120 149 - 190850796 ccagctgggtgtggcgggatgcccctatagccccagctacttgagaagcagaggtgggaggatggcttgagcctgggaggtggaggtttcagtgagctgagattgcaccactgcactccaacctaggcaacagagccaagcatgtctca
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87784259 100 - 129401213 I
e canFam3.chr16             18080603   0 -  59632846 C

a score=20998.000000
s hg38.chr4_KI270925v1_alt    406742 8 +    555799 aaaTCatt
s panTro4.chr4             193119663 8 + 193495092 aaaTCATT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198192841 8 + 198332218 aaaTCATT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113866773 8 + 115148730 aaaTCATT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183783134 8 + 184069350 aaaTCATT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189176437 8 + 189454096 aaaTCatt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178595271 8 + 178775436 aaatcatt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135530520 8 + 135778131 aaaTCatt
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190635269 3 - 190850796 ag-----t
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87784359 8 - 129401213 AGATCATC
i mm10.chr8                I 100 C 0
e canFam3.chr16             18080603 0 -  59632846 C

a score=430620.000000
s hg38.chr4_KI270925v1_alt    406750 170 +    555799 aataaataaatacataaataaataaatgaatgaataa-ctaaTTCTATTCTTTCTTTTCCCCATCCCCACAGATAGCTACATTAATACAAATGACAGATTATAACCATATATA-AATATCCCAATTAAAACAAACAAATGACTAAAA--CAGGTGGCAGTGTTAATTGCCGATC
s panTro4.chr4             193119671 170 + 193495092 aataaataaatacataaataaataaatgaatgaataa-ctaaTTCTATTCTTTCTTTTCCCCATCCCCACAGATATCTACATTAATACAAATGACAGATTATAACCATATATA-AATATCCCAATTAAAACAAACAAATGACTAAAA--CAGGTGGCAGTGTTAATTGCCGATC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198192849 170 + 198332218 aataaataaatacataaataaatacatgaatgaataa-ctaaTTCTACTCTTTCTTTTCCCTATCCCCACAGATAGCTACATTAATACAAATGACATATTATAACCATATATA-AATATCCTAATTAAAACAAACAAATGACTAAAA--CAGGTGGCAGTGTTAATTGCCGATC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113866781 144 + 115148730 AATAAATA------------------------AATAA-ATAATCCTATTC--TCTTTTCTCCATCCTCACAGATAGCTACATTAATACAAATGACATATTATAACCATATATA-AATATCCCAATTAAAACAAACAAATGACTAAAA--CAGGTAGCAGTGTTAATTGCCGATC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183783142 162 + 184069350 aataaataaatacataaataaataaatgaatgaa-----taaTTCTAT----TCTTTTCCCCATCCCCATAGATAGCTACATTAATACAAATGACATATTATAACCCCATATA-AATATCCTAATTAAAACAAACAAATGACTAAAA--CAGGTGGCAGTGTTAATTGCCGATC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189176445 162 + 189454096 aataaataaatacataaataaataaatgaatgaa-----taaTTCTAT----TCTTTTCCCCATCCCCATAGATAGCTACATTAATACAAATGACATATTATAACCCCATATA-AATATCCTAATTAAAACAAACAAATGACTAAAA--CAGGTGGCAGTGTTAATTGCCGATC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178595279 162 + 178775436 aataaataaatacataaataaataaatgaatgaa-----taattctaT----TCTTTTCCCCATCCCCATAGATAGCTACATTAATACAAATGACATATTATAACCCCATATA-AATAtcctaattaaaacaaacaaatgactaAAA--CAGGTGGCAGTGTTAATTGCCGATC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135530528 162 + 135778131 aataaataaatacataaataaataaatgaatgaa-----taaTTCTAT----TCTTTTCCCCATCCCCATAGATAGCTACATTAATACAAATGACATATTATAACCCCATATA-AATATCCTAATTAAAACAAACAAATGACTAAAA--CAGGTGGCAGTGTTAATTGCCCATC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190635272 142 - 190850796 aataaataaaaaaaTAAC---------------------TCATTCTATTGTTTCTTTTTCCCACCCCCACAGAGAGCTACATTAATAAAAATGACATAAGATAACTGTATCTG-AATATCCTCATTA----AAACAAATGACTGAAA--CC----ACAGTGTTAATTGCCGGTC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87784367 141 - 129401213 TAGAAAT-------CAACTAGAAGGTTAAACTAAAAATCTCACTGAATCCTTTCCTCTCCCTGCCCCCACAGACAGCTCTAATAATGCATCTGATATGCCATAAGTATATA-A-AATATTCCAATTGAACAAAA------ACT--AG--CAGGCAACAGT--------------
i mm10.chr8                C 0 C 0
s canFam3.chr16             18080603 122 -  59632846 aacaaaacaaaacaaaaa--------------------aaacCTTTAT----GCTTTTTCC---------------CCACGCTTGTACAAATGAC-----CTAAGTATATACATAAAATCACAATTAAAACA--------ACTAAAACCCAGTCTGTAGTATTAATTGCTGATC
i canFam3.chr16            C 0 I 31

a score=12040.000000
s hg38.chr4_KI270925v1_alt    406920 4 +    555799 TCTC
s panTro4.chr4             193119841 4 + 193495092 TCTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198193019 4 + 198332218 TATC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113866925 4 + 115148730 TCTC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183783304 4 + 184069350 TCTC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189176607 4 + 189454096 TCTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178595441 4 + 178775436 TCTC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135530690 4 + 135778131 TCTC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190635414 4 - 190850796 TCTC
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87784508 0 - 129401213 C
e canFam3.chr16             18080725 31 -  59632846 I

a score=2685484.000000
s hg38.chr4_KI270925v1_alt    406924 751 +    555799  
s panTro4.chr4             193119845 749 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198193023 765 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113866929 760 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183783308 772 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189176611 772 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178595445 769 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135530694 768 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190635418 746 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87784508 706 - 129401213  
i mm10.chr8                C 0 C 0
s canFam3.chr16             18080756 768 -  59632846  
i canFam3.chr16            I 31 I 545

a score=29004.000000
s hg38.chr4_KI270925v1_alt    407675 10 +    555799 -caacatcgac
s panTro4.chr4             193120594 10 + 193495092 -cagcatcgac
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198193788 10 + 198332218 -CAACATCGAC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113867689 10 + 115148730 -caacaccgac
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183784080 10 + 184069350 -caacatcgac
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189177383 10 + 189454096 -caacatcgac
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178596214 10 + 178775436 -CAACATCGAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135531462 10 + 135778131 -caacaccgac
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190636164 11 - 190850796 CCAACATCTAC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87785214 10 - 129401213 -aaatgtctct
i mm10.chr8                C 0 C 0
e canFam3.chr16             18081524 545 -  59632846 I

a score=1341635.000000
s hg38.chr4_KI270925v1_alt    407685 411 +    555799 aagtttgctttcaggcttgccctttgtaaaagtcagagtggcCCCAGTGGAATGCAAGTCCATGCTACTGGTCAGAAAAATATCTTGGTCCTCGTGTTTTCTCTATGGCAAAGATGAGAGGATGAGGGACACTGGGCTTTTCTCCTCCCGGGTTC-----TGTAAGCTTCTGCCTTCCTAAAAAGGCTGATTCCCTAACTCATGCCATTCTCCAACCTGGTGCATGAAAGACAGTGTCCCAGATGGCATCTTCCTTGAACAACGAAGAACGAGGACTTCTGGAGCCAAAAGCTGGGTTAAATATGTGCTCTGATGTTCATTCGCTACAGGAG-----CCTCGGGTTCCGCATCTGTCAACTAGAAATAACACCCTTGCCTTA--GGC-AGGGGCT-GTGGTAACGTGCTGTGGGTACATAGTGAC
s panTro4.chr4             193120604 411 + 193495092 aagtttgctttcaggcttgccctttgtaaaagtcagagtggcCCCAGTGGAATGCAAGTCCATGCTACTGGTCAGAAAAACATCTTGGTCCTCGTGTTTTCTCTATGACAAAGATGAGAGGATGAGGGACACTGAGCTTTTCTCCTCCCGGGTTC-----TGTAAACTTCTGCCTTCCCAAAAAGGCTGATTCCCTAACTCATGCCATTCTCCAACCTAGTGCATGAAAGACAGTGTCCCAGATGGCAACTTCCTTGAACAACGAAGAACGAGGACTTCTAGAGCCAAAAGCTGGGTTAAAAATGTGCTCTGATGCTCATTCGCTACAGGAG-----CCTCGGGTTCCGCATCTATCAACTAGAAATAACACCCGTGCCTTA--GGC-AGGGGCT-GGGGTAAGGTGCTGTGGGTACATAGTGAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198193798 388 + 198332218 AAGTTTGCTT----------------------TCAGAGTGGCCCCAGTGGAATGCAAGTCCATGCTACTGGTCAGAAAATCATCTTGGTCCTCGTGTTTTCTCTGTGGCAAAGATGAGAGGATGAGGGACCCTGGGCTTTTCTCCTCCCGGGTTC-----TGTAAGCTTCTGCCTTCCCAAAAAGGCTGATTCCCTAACTCATGCCATTCTCCAACCTGGTGCATGAAAGACAGTGTCCCAGATGGCAACTTCCTTGAACAACAAGGAACAAGGACTTCTAGAGCC-AAAGCTGGGTTAAATATGTACTCCAATGCTCATTCACTACAGGAG-----CCTCGGGTTCCATATCTATCAACTAGAAATAACACCCGTGCCTTA--GGC-AGGGGCT-GGGGTAAGGTGCTGTGGGTACATAGTGAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113867699 407 + 115148730 aagtttgctttcaggcttgccctTTGTACAAGTCAGAGTGG--ccagtggaatgcaagtccatgctactggtcagaaaatcatcctggtcctcgtgttttctctatg-caaagaggagaggatgagggaccctgggcttttctcctccctggttc-----tgtaagcttctgccttcccaaaaaggctgattccccaactcatgccgttctccaacctgatgcatgaaagacagtgtcccagatggcaccttccttgaacaacaAAGAACAAGGGCTTCTAGAGCC-AAAACTGGGTTAAATATGTGCTCCGATGCTCATTCGCTACAGgag-----cctcaggttctgcatctgtcaactggaaataacacccgtgcctta--ggc-aggggct-ggggtaaggTGCTGTGGGTGCATAGTGAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183784090 415 + 184069350 aagtttgctttcaggctcaccctttgtaaaagtcagagtgGGCCCAGTGGAATGCAAGTCCATGCTACTGGTCAGAAAA-TATCTTGGTCCTCGTGTTTCCTCTGTGGCAAAGATGAGAGGATGAGGGACCCTGGGCTTTTCTCCTCCCTGGCTT-----TGTAAGCTTCTGCCTTCCCAAAAAGGCTGATGCCCTCACTTATGCCATTCTCCAACCTGGTGCATGAAAGACAATGTCCCAGATGGCACCTTCCTTCGACAACCAAGAACGAGGACTTCTAGAGCCAAAAGCTGGGTTAAATATGTGCTCTGATGCTCATTCGTTACGGGAGCCTACCCTTGGGTTCCTCGTCTATCAACTAGAAATAATACCCGTGCCACA--GGC-AGGAGCT-GGGGTAAGGTACTATGGGTACAGAGTGAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189177393 415 + 189454096 aagtttgctttcaggctcaccctttgtaaaagtcagagtgggcccagtggaatgcaagtccatgctactggtcagaaaa-tatcttggtcctcgtgtttcctctgtggcaaagatgagaggatgagggaccctgggcttttctcctccctggctt-----tgtaagcttctgccttcccaaaaaggctgatgccctcactcatgccatTCTCCAACCTGGTGCATGAAAGACAATGTCCCAGATGGCACCTTCCTTCGACAACCAAGAACGAGGACTTCTAGAGCCAAAAGCTGGGTTAAATATGTGCTCTGATGCTCATTCGTTACGGGAGCCTGCCCTTGGGTTCCTCGTCTATCAACTAGAAATAATACCCGTGCCACA--GGC-AGGAGCT-GGGGTAAGGTACTGTGGGTACAGAGTGAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178596224 415 + 178775436 AAGTTTGCTTTCAGGCTTGCCCTCTGTAAAAGTCAGAGTGGCCCCAGTGGAATGCAAGTCCATGCTACTGGTCAGAAAA-TATCTTGGTCCTCGTGTTTCCTCTGTGGCAAAGATGAGAGGATGAGGGACCCTGGGCTTTTCTCCTCCCTGGCTT-----TGTAAGCTTCTGCCTTCCCAAAAAGGCTGATGCCCTCACTCATGCCATTCTCCAACCTGGTGCATGAAAGACAGTGTCCCAGATGGCACCTTCCTTCGACAACAAAGAACGAGGACTTCTAGAGCCAAAAGCTGGGTTAAATATGTGCTCTGATGCTCATTCGTTACGGGAACCCGCCCTTGGGTTCCTCGTCTATCAACTAGAAACAATACCCGTGCCACA--GGC-AGGAGCT-GGGGTAAGGTGCTGTGGGTACAGAGTGAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135531472 413 + 135778131 aagtttgctttcaggctcgccctttgtaaaagtcagagtggccccagtggaatgcaagtccatgctactggtcagaaaa-catcttggtcctcatgtttcctctgcggcaaagatgagaggatgaaggaccctggacttttctcctccctggctt-----tgtaagcttctgccttcccaaaaaggctgatgccctcactcatgccatTCTCCAACCTGGTGCATGAAAG--AGTGTCCCAGATGGCACCTTCCTTCAACAACAAAGAATGAGGACTTCTAGAGCCAAAAGCTGGGTTAAATATGTGCTCTGATGCTCATTCGTTACGGGAGCCTGCCCTTGGGTTCCTCGTCTATCAACTAGAAATAATACCCGTGCCACA--GGC-AGGAGCT-GGGGTAAGGTGCTGTGGGTACAGAGTGAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190636175 387 - 190850796 TACTTTGTCTTTAGGCTCACCCTTTTTAAAAGTTAGAGTGGCCCCC-TGGAAAGGAAGTCCATGCTACTGGTCAGAAAAGCATCTTGGTCCTCATGTTTCCTCTATGGCAAAGATGAGAGGATGAGTT-------TCTTTTTTCCTCCCTGGCTT-----TGTAAGCTTCTGCCTTCACCAAAAGCCTGATTCCCTAACCCATGCCATTCTCCAACCTGGTGCATGACAGACAGTGTCCCAGATGGGACCCTCCTTGAACAACATAGAATGAGGACTTCTAGAGCCAAGAGCTGGGTTAAATATGTGCTCTGAGGCTCATTCCCTACAGGAA-----CCTTGGGTTCCTCATCTGTCAACTAGAAAT---ACCTGTGCCATA--GGC-AGGGGCT-GGGGTAATGTGCCGTA-------------
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87785224 406 - 129401213 aagtttgctttcaggcttacaggcttataaaagctgagaga-ccaacTATACTACCAATTCACGCTACTGCTCAGCAAAGCACCATAGCCCTCATATCTTCCTCATGGGAGA-AGGAATGTGTGGGAAATACTTGCCTTCTTCCCTCCCTGTATTTTTTATTTGAGTTTTTGTTTTTTCCAATAACCATGAGTTGTTACT-GTGCTCCTCCGTGGCCTGCTGTGTAG----CAGTTTCACAGACGGGATCTTCTTAGAGCAATAATAACTGAGGATATC-AGAGCCCAAAACTGTGTCAACTATATTCTCAAATACTCATAAGCTACA---------CCAGCGTTTCCCCACCTATCTGCTACAAGCCATACCTATGCCACATTGGG-TAGGCTT-GTGGTGATGTGATGTAAGTACGTAGGGAC
i mm10.chr8                C 0 I 460
s canFam3.chr16             18082069 386 -  59632846 aagtttgctttcaggctcatccttttaggaggggaaa-----------------------cATGCTACTTGTCAACAAAGCACCTTGGCCCTTGTATTTTCTCTATGAGAAAAATGAGAGGCTGGGAGACAC--Atcttttctcctctttggctt-----tggaagagttgccttccccgatacagcagattcccttacccataccatgc-cctacctagtgcatgacagagagtgacccagatgggaccctccttgagcaacaAGGATTGAAGACTTC-AGAGCCAAACACCGGGccaactatgtgctctgatgctcattagttatatgag-----cctcagttttttcgtctatcaactagaagtaatacctatcccaga--ttctaagagctagtgataatgtatcctaagtaaatggttat
i canFam3.chr16            I 545 C 0

a score=83398.000000
s hg38.chr4_KI270925v1_alt    408096 28 +    555799 GGTCAGAACAGTAAAGAAATGCAATCAG
s panTro4.chr4             193121015 28 + 193495092 GGTCAGAACAGTAAAGAAATGCAATCAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194186 28 + 198332218 GGTCAGCACAGTAAAGAAATGCAATCAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868106 28 + 115148730 GGTCAGCAGAGTAAAGAAATGCAATCAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183784505 28 + 184069350 GGTCAGCACAGTAAAGAAACACAGTCAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189177808 28 + 189454096 GGTCAGCACAGTAAAGAAACACAGTCAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178596639 28 + 178775436 GGTCAGCACAGTAAAGAAACACAGTCAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135531885 28 + 135778131 GGTCAGCACAGTAAAGAAACACAGTCAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190636562 24 - 190850796 ----AGAACATTAAAGAAATGCAATCAG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18082455 27 -  59632846 agttggcacatt-aagaaactcagtaaa
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87785630 460 - 129401213 I

a score=648902.000000
s hg38.chr4_KI270925v1_alt    408124 212 +    555799 TGGTAGCTACTACTGTTGGCATAATTACGAACAGCAGGAGGATGAACAGACACCCCCTGAAAAC-TTAGGAACATTATTTTTAAATCACATGTAGTGTGAAAAGTACACAGTTTGGTTTGTTATACAGAAACAAGAGGTTTAAATCCATGGAGTAGAAGATA-ACGATAATGCACTGATTGCTGGTTATGAAAGTCAGGAAGAAAATAACCAAG
s panTro4.chr4             193121043 212 + 193495092 TGGTAGCTACTACTGTTGGCATAATTACGAACAGCAGGAGGATGAACAGACACCCCCGGAAAAG-TTAGGAATATTATTTTTAAATCAGATGTAGTGTGAAAAGTACACAGCTTGGTTTGTTATACGGAAACAAGATGTTTAAATCCATGGAGTAGAAGATA-ACGATAATGCACTGATTGTTGGTTATGAAAGTCAGGAAGAAAATAACCAAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194214 212 + 198332218 TGGTAGCTACTACTGTTGGTGTAATTATGAACAGAAGGAGAATGAACAGACACCTCCTGGAAAC-TTAGGAACATTATTTTTAAATCACATGTAGTGTGAAAAGTACACAGTTTGGTTTGTTATACAGAAACAAGATGTTTAAATCCATGGAGTAGAAGATA-ACAATAAAGCACTGCCTGTTGGTTATGAAAATCAGGAAGAAAATAACCAAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868134 209 + 115148730 TGGTAGCTACTACTGTTGGTGTAATTATGAACAGCAGGAGGACGAACAGACACCCCCTGGAAAC-TTAGGAACATAATTTTTAAATCACATGTAGTGTGAAAAGTACACTGTTTGGTTTGTTATACAGAAACAAGATGTTAAAATCCATGGAGCAGAAGATA----ATAAAGCACTGCCTGTTGGTTATGAAAATCAGGAAGAAAATAACCAAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183784533 211 + 184069350 TGGTAGCTACTACTGCTGGTGTAATTATGAACAGCAGGAGGATGAACAGACACC-CCTGGAAAC-TTAGGAACATTATTTTTAAATCACATGTAGTGGAGAAAGTACACAGTTTGGTTTATTATAAAGAAACAAAATGTTTAAATCCGTGGAGCAGAAGATA-ACAATAAAGGACTGCTTGTTGGTTATGAAAATCAGGACGAAAATCACCAAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189177836 211 + 189454096 TGGTAGCTACTACTGCTGGTGTAATTATGAACAGCAGGAGGATGAACAGACACC-CCTGGAAAC-TTAGGAACATTATTTTTAAATCACATGTAGTGGAGAAAGTACACAGTTTGGTTTATTATAAAGAAACAAAATGTTTAAATCCGTGGAGCAGAAGATA-ACAATAAAGGACTGCTTGTTGGTTATGAAAATCAGGATGAAAATCACCAAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178596667 211 + 178775436 GGGTAGCTACTACTGCTGGTGTAATTATGAACAGCAGGAGGATGAACAGACACC-CCTGGAAAC-TTaggaacattatttttaaatcacatgtAGTGGAGAAAGTACACAGtttggtttattataaagaaacaaaatgtttaaatccGTGGAGTAGAAGATA-ACAATAAAGCACTGCTTGTTGGTTATGAAAATCAGGACGAAAATCACCAAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135531913 211 + 135778131 TGGTAGCTACTACTGCTGGTGTAATTATGAACAGCAGGAGGATGAACAGACACC-CCTGGAAAC-TTAGGAACATTATTTTAAAATCACATGTAGTGGAGAAAGTACACAGTTTGGTTTATTATAAAGAAACAAAATGTTTAAATCCGTGGAGTAGAAGATA-ACAATAAAGCACTGCTTGTTGGTTATGAAAATCAGGACGAAAATCACCAAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190636586 199 - 190850796 TGGTAGCTACAACTT--------ATTATGAACAGCAAGAGAATGAACAGACGCCCCCTAGAAAC-TTAGGAATATA--TTTTAAATCACAGGTAATGTAAAAAGTGCACAGTTTGGCTTATTATACAG-AACAAAATGTTTAAATCCATGGAGTAGAAGATA-ACAATA--GCACTGCTTTCTGGTGATGAACGTCAGGAAGAAAATGACCAAG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87786090 205 - 129401213 TGTTAACCACCACCTCTGGTATCAATAGACATAGATG-----TGAGCAGGCACTCCCTTGAAACGTGAAGGTCATT--TTTTAAATTGAGCATATCCTTAAACGTATGTAGTTTGGTGTACTGTGCAGAAATGAAGT-TTTAAATCCAAGGTGTAGCTGACA-ATGAGAAAGTTCTGTGGGCTAGCTACCTCAGTGAGGAAAGAAATCAGTAAG
i mm10.chr8                I 460 I 1388
s canFam3.chr16             18082482 178 -  59632846 tggtagctactattatCAGTATAATTATTCTCAGCAGATG----------------------AC-TTTTGAATATT-TTTTTAAAT---GTGTAAACTAAAATGTACA--ATTTG----ATTACACAGAAATAAAGCTTTTTAATCCA-ATAATAGATGATAAATGATATAGCACCACTTTCTGGTTATATGAGTGAGGAAGAAAATAAAGA--
i canFam3.chr16            C 0 C 0

a score=223571.000000
s hg38.chr4_KI270925v1_alt    408336 85 +    555799 TTCAGTGCTCATCTTGATCTAAGAC-CATTCATGGCCTGACCTCTCTAATGCGCAGAGGATAAAACACGGGAGTGCATGATGCTCA
s panTro4.chr4             193121255 85 + 193495092 TTCAGTGCTCATCTTGATCTAGGAC-CATTCATGGCCTGACCTCTCTAATGCGCAGAGGATAAAACCTGGGAGTGCATGATGCTCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194426 85 + 198332218 TTCGGTGCTCATCTTGATCTAGGAC-CATTCATGGCCCGACCTCTCTACTGCGCAGAGGATAAAACCCGGGCATGCATGATGCTTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868343 81 + 115148730 TTCAGTGCTCATCTTGATCTAGGAC-CATTCATGGCCCGACCTCTCTACCACGCAGAGGATAAAACCCGGGCATGCAGGATG----
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183784744 85 + 184069350 TTCAGTGCTCATCTTGATCTAGGAC-CATTCATGGCCCAACCCCTCTACTGCGCAGAGGATGAAATCCAGGTGTGCACGATGCTTA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189178047 85 + 189454096 TTCAGTGCTCATCTTGATCTAGGAC-CATTCATGGCCCAACCCCTCTACTGCGCAGAGGATGAAATCCAGGTGTGCACGATGCTTA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178596878 85 + 178775436 TTCAGTGCTCATCTTGATCTAGGAC-CATTCATGGCCCAACCCCTCTACTGCGCAGAGGATGAAATCCAGGTGTGCACGATGCTCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135532124 85 + 135778131 TTCAGTGCTCATCTTGATCTAGGAC-CATTCATGGCCCAACCCCTCTACTGCACAGAGGATGAAACCCGGGTGTGCACGATGCTCA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190636785 66 - 190850796 TTAAGTGCTCATCTCCATCCAGGAT-CATTCCTGCCCCAGCGTCTCAGCTGCCCAGAGGA-------------------GTGCTCA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18082660 77 -  59632846 ---AATGCCCATCTTGATCTAGGGTACATTAGTGAGTCTAGCCCTCTACTGTCAAGATGC--AAACCCAA--ATGCATGATATT--
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I

a score=5300.000000
s hg38.chr4_KI270925v1_alt    408421 6 +    555799 CCAAGG
s panTro4.chr4             193121340 6 + 193495092 CCAAGG
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183784829 6 + 184069350 CCAAGG
i rheMac3.chr5             C 0 I 12
s chlSab2.chr7             135532209 6 + 135778131 CCAAGG
i chlSab2.chr7             C 0 I 12
s canFam3.chr16             18082737 5 -  59632846 -CAAGG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e calJac3.chr3             190636851 0 - 190850796 C
e papAnu2.chr5             178596963 0 + 178775436 C
e macFas5.chr5             189178132 0 + 189454096 C
e nomLeu3.chr7b            113868424 0 + 115148730 C
e ponAbe2.chr4             198194511 0 + 198332218 C

a score=1767.000000
s hg38.chr4_KI270925v1_alt    408427 16 +    555799 ATCAGTCAGAATTTCT
s panTro4.chr4             193121346 16 + 193495092 ATCAGTCAGAACTTCT
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113868424  3 + 115148730 -------------TTT
i nomLeu3.chr7b            C 0 I 1
s rheMac3.chr5             183784847 11 + 184069350 ATCAGCCAGAA-----
i rheMac3.chr5             I 12 C 0
s chlSab2.chr7             135532227 11 + 135778131 ATCAGCCAGAA-----
i chlSab2.chr7             I 12 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e papAnu2.chr5             178596963  0 + 178775436 C
e macFas5.chr5             189178132  0 + 189454096 C
e ponAbe2.chr4             198194511  0 + 198332218 C

a score=20920.000000
s hg38.chr4_KI270925v1_alt    408443 12 +    555799 CCAAGGATCAGC
s panTro4.chr4             193121362 12 + 193495092 CCAAGGTTCAGC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194511 12 + 198332218 CCAAGGATCAGC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868428 12 + 115148730 CCAAGGATCAGC
i nomLeu3.chr7b            I 1 C 0
s rheMac3.chr5             183784858 12 + 184069350 CCAAGAATCAGC
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178596963 12 + 178775436 CCAAGGACCAGC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135532238 12 + 135778131 CCAAGAATCAGC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e macFas5.chr5             189178132  0 + 189454096 C

a score=910.000000
s hg38.chr4_KI270925v1_alt    408455 1 +    555799 T
s panTro4.chr4             193121374 1 + 193495092 T
i panTro4.chr4             C 0 I 68
s ponAbe2.chr4             198194523 1 + 198332218 T
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868440 1 + 115148730 T
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178596975 1 + 178775436 T
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742 0 -  59632846 C
e calJac3.chr3             190636851 0 - 190850796 C
e chlSab2.chr7             135532250 0 + 135778131 C
e macFas5.chr5             189178132 0 + 189454096 C
e rheMac3.chr5             183784870 0 + 184069350 C

a score=22610.000000
s hg38.chr4_KI270925v1_alt    408456 21 +    555799 CCCAAATCAACCAAAACTTC-T
s panTro4.chr4             193121443 21 + 193495092 CCCAAATCAACCAGAACTTC-T
i panTro4.chr4             I 68 C 0
s ponAbe2.chr4             198194524 22 + 198332218 CCCAAATCAGCCAGGACTTCAC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868441 21 + 115148730 CCCAAATCAGCCAGAACTTC-T
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183784870 21 + 184069350 CCCAAATCATTCAGAACTTT-C
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178596976 16 + 178775436 CCCAAATCAGCCAGAA------
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135532250 20 + 135778131 CCCAAATCA-CCAGAACTTC-C
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e macFas5.chr5             189178132  0 + 189454096 C

a score=56597.000000
s hg38.chr4_KI270925v1_alt    408477 36 +    555799 CCAAGGTTCAGCTCCCAAATCAACCAGAACTTCTCT
s panTro4.chr4             193121464 36 + 193495092 CCAGGGATCAGCTCCCAAATCAACCAGAGCTTCTCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194546 36 + 198332218 CCAGGCATCAGCTCCCAAATCAGCCAGGACTTCACC
i ponAbe2.chr4             C 0 T 69
s nomLeu3.chr7b            113868462 36 + 115148730 CCAAGGATCAGCTCCCAAATCGGCCAGAACTTATCC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183784891 36 + 184069350 CCCAGGACCAGCCCCCAAATCATTCAGAACTTCTCC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189178132 31 + 189454096 CCAAGGACCAGCTCCCAAATCAGCCAGAA-----CC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178596992 35 + 178775436 CCAAGAATCAGC-CCCAAATCATTCAGAACTTTCCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135532270 34 + 135778131 CCCAGGACCAGCCCCCAAATCA-CCAGAACTTC-CC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C

a score=111407.000000
s hg38.chr4_KI270925v1_alt    408513 62 +    555799 AAGGATCAGCTCCCAAATCAACCAGAACTTCTCCAAGG-TTCAGCTCCCAAATCAACCAGAAC
s panTro4.chr4             193121500 62 + 193495092 AAGGATCAGCTCCCAAATCAACCAGAACTTCTCCAAGG-ATCAGCCCCCAAATCAACCAGAAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194513 63 + 198332218 AAGGATCAGCTCCCAAATCAGCCAGGACTTCACCCAGGCATCAGCTCCCAAATCAGCCAGGAC
i ponAbe2.chr4             T 69 C 0
s nomLeu3.chr7b            113868498 62 + 115148730 AAGGATCAGCTCCCAAATCAGCCAGAACTTATCCAAGG-ACCAGCTCCAAAATCAGCCAGAAC
i nomLeu3.chr7b            C 0 T 68
s rheMac3.chr5             183784927 60 + 184069350 CAGAATCAGCTCCCAAATCA-CCAGAACATCCCCCAGG-ACCAGCCCCCAAATCA-CCAGAAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189178163 61 + 189454096 AAGAATCAGC-CCCAAATCATTCAGAACTTTCCCCAGG-ACCAGCCCCCAAATCATTCAGAAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597027 61 + 178775436 CAGGACCATCCCCCAAATCATTCAGAACTTCTCCCAGG-ACCAGCTCCCAAATCA-CCAGAAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135532304 60 + 135778131 CAGGACCAGCCCCCAAATCA-CCAGAACTTCCCCCAGG-ACCAGCCCCCAAATCA-CCAGAAC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C

a score=-4091.000000
s hg38.chr4_KI270925v1_alt    408575 4 +    555799 -TTC-T
s panTro4.chr4             193121562 4 + 193495092 -TTC-T
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194576 5 + 198332218 -TTCAC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868492 4 + 115148730 -TTA-T
i nomLeu3.chr7b            T 68 C 0
s rheMac3.chr5             183784987 4 + 184069350 TTTC--
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189178224 4 + 189454096 TTCC--
i macFas5.chr5             C 0 T 99
s papAnu2.chr5             178597088 4 + 178775436 ATCC--
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135532364 4 + 135778131 TTCC--
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742 0 -  59632846 C
e calJac3.chr3             190636851 0 - 190850796 C

a score=33562.000000
s hg38.chr4_KI270925v1_alt    408579 21 +    555799 CCAGGGATCAGCTCCCAAATC
s panTro4.chr4             193121566 21 + 193495092 CCAGGGATCAGCTCCCAAATC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194581 21 + 198332218 CCAGGCATCAGCTCCCAAATC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868496 21 + 115148730 CCAAGGATCAGCTCCCAAATC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183784991 21 + 184069350 CCCAGGACCAGCCCCCAAATC
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178597092 21 + 178775436 CCCAGGACCAGCTCCCAAATC
i papAnu2.chr5             C 0 T 33
s chlSab2.chr7             135532368 20 + 135778131 -CCAGGACCAGCCCCCAAATC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e macFas5.chr5             189178228 99 + 189454096 T

a score=910.000000
s hg38.chr4_KI270925v1_alt    408600 1 +    555799 A
s panTro4.chr4             193121587 1 + 193495092 A
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194602 1 + 198332218 A
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868517 1 + 115148730 A
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183785012 1 + 184069350 A
i rheMac3.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742 0 -  59632846 C
e calJac3.chr3             190636851 0 - 190850796 C
e chlSab2.chr7             135532388 0 + 135778131 C
e papAnu2.chr5             178597113 33 + 178775436 T
e macFas5.chr5             189178228 99 + 189454096 T

a score=11043.000000
s hg38.chr4_KI270925v1_alt    408601 9 +    555799 ACCAGAAAT
s panTro4.chr4             193121588 9 + 193495092 GCCAGAACT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194603 9 + 198332218 GCCAGGACT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868518 9 + 115148730 GCCAGAACT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183785013 9 + 184069350 TACAGAACT
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178597080 9 + 178775436 ACCAGAACA
i papAnu2.chr5             T 33 C 0
s chlSab2.chr7             135532388 9 + 135778131 ACCAGAACT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742 0 -  59632846 C
e calJac3.chr3             190636851 0 - 190850796 C
e macFas5.chr5             189178228 99 + 189454096 T

a score=57113.000000
s hg38.chr4_KI270925v1_alt    408610 33 +    555799 TT-TCCAAGGATCAGCTCCCAAATTAGCCAGAAC
s panTro4.chr4             193121597 33 + 193495092 TC-TCCAGGGATCAGCTCCCAAATCAACCAGAGC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194612 34 + 198332218 TCACCCAGGCATCAGCTCCCAAATCAGCCAGGAC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868527 33 + 115148730 TA-TCCAAGGACCAGCTCCAAAATCAGCCAGAAC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183785022 32 + 184069350 TC-TCCCAGAATCAGCTCCCAAATCA-CCAGAAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189178129 33 + 189454096 TT-ACCAAGGACCAGCTCCCAAATCAGCCAGAAC
i macFas5.chr5             T 99 I 28
s papAnu2.chr5             178597089 32 + 178775436 TC-CCCCAGGACCAGCTCCCAAATCA-CCAGAAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135532397 32 + 135778131 TC-CCCCAGGACCAGCCCCCAAATCA-CCAGAAC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C

a score=5481.000000
s hg38.chr4_KI270925v1_alt    408643 3 +    555799 TTC
s panTro4.chr4             193121630 3 + 193495092 TTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194646 3 + 198332218 TTC
i ponAbe2.chr4             C 0 I 106
s nomLeu3.chr7b            113868560 3 + 115148730 TTC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183785054 3 + 184069350 ATC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189178190 3 + 189454096 TTT
i macFas5.chr5             I 28 C 0
s papAnu2.chr5             178597121 3 + 178775436 TTC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135532429 3 + 135778131 TTC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742 0 -  59632846 C
e calJac3.chr3             190636851 0 - 190850796 C

a score=42789.000000
s hg38.chr4_KI270925v1_alt    408646 23 +    555799 TCCAGGGATCAGCCCCCAAATCA
s panTro4.chr4             193121633 23 + 193495092 TCCAAGGATCAGCTCCCAAATCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194755 23 + 198332218 CCCAGGCATCAGCTCCCAAATCA
i ponAbe2.chr4             I 106 C 0
s nomLeu3.chr7b            113868563 23 + 115148730 TCCAAGGATCAGCTCCCAAATCG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183785057 23 + 184069350 CCCCAGGACCAGCCCCCAAATCA
i rheMac3.chr5             C 0 T 243
s macFas5.chr5             189178193 23 + 189454096 CCCCAGGACCAGCCCCCAAATCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597124 22 + 178775436 CCCCAGGACCAGCCCCCAAATC-
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135532432 22 + 135778131 CCCCAGGACCAGCCCCCAAATC-
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C

a score=18421.000000
s hg38.chr4_KI270925v1_alt    408669 13 +    555799 ACCAAAACTTCTC
s panTro4.chr4             193121656 13 + 193495092 ACCAGAACTTCTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194778 13 + 198332218 GCCAGGACTTCAC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868586 13 + 115148730 GCCAGAACTTTTC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189178216 13 + 189454096 TTCAGAACTTCCC
i macFas5.chr5             C 0 T 67
s papAnu2.chr5             178597146 13 + 178775436 ACCAGAACTTCTC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135532454 13 + 135778131 ACCAGAACTTCCC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e rheMac3.chr5             183785080 243 + 184069350 T

a score=5677.000000
s hg38.chr4_KI270925v1_alt    408682 7 +    555799 CAAGG-AT
s panTro4.chr4             193121669 7 + 193495092 CAAGG-TT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194791 8 + 198332218 CCAGGCAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868599 7 + 115148730 CCAGG-AT
i nomLeu3.chr7b            C 0 T 178
s macFas5.chr5             189178162 7 + 189454096 CAAGA-AT
i macFas5.chr5             T 67 C 0
s papAnu2.chr5             178597159 7 + 178775436 CCAGG-ac
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135532467 7 + 135778131 CCAGG-AC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742 0 -  59632846 C
e calJac3.chr3             190636851 0 - 190850796 C
e rheMac3.chr5             183785080 243 + 184069350 T

a score=3715.000000
s hg38.chr4_KI270925v1_alt    408689 4 +    555799 CAG-C
s panTro4.chr4             193121676 4 + 193495092 CAG-C
i panTro4.chr4             C 0 T 322
s ponAbe2.chr4             198194799 4 + 198332218 CAG-C
i ponAbe2.chr4             C 0 I 1
s macFas5.chr5             189178169 4 + 189454096 CAG-C
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597166 5 + 178775436 cagcc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135532474 4 + 135778131 CAG-C
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742 0 -  59632846 C
e calJac3.chr3             190636851 0 - 190850796 C
e rheMac3.chr5             183785080 243 + 184069350 T
e nomLeu3.chr7b            113868606 178 + 115148730 T

a score=3000.000000
s hg38.chr4_KI270925v1_alt    408693 3 +    555799 CCC
s ponAbe2.chr4             198194804 3 + 198332218 CCC
i ponAbe2.chr4             I 1 C 0
s macFas5.chr5             189178173 3 + 189454096 CCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597171 3 + 178775436 ccc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135532478 3 + 135778131 CCC
i chlSab2.chr7             C 0 T 231
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742 0 -  59632846 C
e calJac3.chr3             190636851 0 - 190850796 C
e rheMac3.chr5             183785080 243 + 184069350 T
e nomLeu3.chr7b            113868606 178 + 115148730 T
e panTro4.chr4             193121680 322 + 193495092 T

a score=4265.000000
s hg38.chr4_KI270925v1_alt    408696 14 +    555799 AAATCAACCAAAAT
s ponAbe2.chr4             198194807 14 + 198332218 AAATCAGCCAGGAC
i ponAbe2.chr4             C 0 I 1
s macFas5.chr5             189178176 14 + 189454096 AAATCATTCAGAAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597174 13 + 178775436 aaatca-ccagaac
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T
e nomLeu3.chr7b            113868606 178 + 115148730 T
e panTro4.chr4             193121680 322 + 193495092 T

a score=910.000000
s hg38.chr4_KI270925v1_alt    408710 1 +    555799 T
s panTro4.chr4             193121358 1 + 193495092 T
i panTro4.chr4             T 322 C 0
s ponAbe2.chr4             198194822 1 + 198332218 T
i ponAbe2.chr4             I 1 C 0
s macFas5.chr5             189178190 1 + 189454096 T
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597187 1 + 178775436 t
i papAnu2.chr5             C 0 T 228
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742 0 -  59632846 C
e calJac3.chr3             190636851 0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T
e nomLeu3.chr7b            113868606 178 + 115148730 T

a score=-243.000000
s hg38.chr4_KI270925v1_alt    408711 3 +    555799 TCT
s panTro4.chr4             193121359 3 + 193495092 TCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194823 3 + 198332218 CAC
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189178191 3 + 189454096 TTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178596960 3 + 178775436 TCA
i papAnu2.chr5             T 228 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742 0 -  59632846 C
e calJac3.chr3             190636851 0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T
e nomLeu3.chr7b            113868606 178 + 115148730 T

a score=47942.000000
s hg38.chr4_KI270925v1_alt    408714 46 +    555799 CCAAGGATCAGCTCCCGAATCAACCAAAACTTCTCCAAGGATCAGC
s panTro4.chr4             193121362 46 + 193495092 CCAAGGTTCAGCTCCCAAATCAGCCGGAACTTCTCCAAGGATCAGC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194826 46 + 198332218 CCAGGCATTAGCTCCCAAATCAGCCAGAACTTCTCCAAGGATCAGC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868428 46 + 115148730 CCAAGGATCAGCTCCCAAATCAGCCAGAACTTCTCCAAGGATCAGC
i nomLeu3.chr7b            T 178 C 0
s macFas5.chr5             189178194 46 + 189454096 CCCAGGACCAGCCCCCAAATCATTCAGAACTTCCCCCAGGACCAGC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178596963 41 + 178775436 CCAAGGACCAGCTCCCAAATCAGCCAGAA-----CCAAGAATCAGC
i papAnu2.chr5             C 0 T 41
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=5491.000000
s hg38.chr4_KI270925v1_alt    408760 12 +    555799 CACCAAATCAAC
s panTro4.chr4             193121408 12 + 193495092 TCCCAAATCAGC
i panTro4.chr4             C 0 T 68
s ponAbe2.chr4             198194872 11 + 198332218 TCCCAAAT-AGC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868474 12 + 115148730 TCCCAAATCGGC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189178240 12 + 189454096 CCCCAAATCATT
i macFas5.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e papAnu2.chr5             178597004 41 + 178775436 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=8604.000000
s hg38.chr4_KI270925v1_alt    408772 10 +    555799 CAGAACTTCT
s panTro4.chr4             193121352 10 + 193495092 CAGAACTTCT
i panTro4.chr4             T 68 C 0
s ponAbe2.chr4             198194883 10 + 198332218 CAGAACTTCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868486 10 + 115148730 CAGAACTTAT
i nomLeu3.chr7b            C 0 T 68
s macFas5.chr5             189178252 10 + 189454096 CAGAACTTCT
i macFas5.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e papAnu2.chr5             178597004 41 + 178775436 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=6703.000000
s hg38.chr4_KI270925v1_alt    408782 7 +    555799 CCAAGGT
s panTro4.chr4             193121362 7 + 193495092 CCAAGGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194893 7 + 198332218 CCAAGGA
i ponAbe2.chr4             C 0 T 242
s nomLeu3.chr7b            113868428 7 + 115148730 CCAAGGA
i nomLeu3.chr7b            T 68 C 0
s macFas5.chr5             189178262 7 + 189454096 CCCAGAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178596963 7 + 178775436 CCAAGGA
i papAnu2.chr5             T 41 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742 0 -  59632846 C
e calJac3.chr3             190636851 0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=20636.000000
s hg38.chr4_KI270925v1_alt    408789 17 +    555799 TCAGCTCCCAAATCAAC
s panTro4.chr4             193121369 17 + 193495092 TCAGCTCCCAAATCAGC
i panTro4.chr4             C 0 T 34
s ponAbe2.chr4             198194658 17 + 198332218 TCAGCTCCCAAATCAGC
i ponAbe2.chr4             T 242 C 0
s nomLeu3.chr7b            113868435 17 + 115148730 TCAGCTCCCAAATCAGC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189178269 16 + 189454096 TCAGCTCCCAAATCA-C
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178596970 17 + 178775436 CCAGCTCCCAAATCAGC
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=6396.000000
s hg38.chr4_KI270925v1_alt    408806 10 +    555799 CAGAACTTCT
s panTro4.chr4             193121352 10 + 193495092 CAGAACTTCT
i panTro4.chr4             T 34 C 0
s ponAbe2.chr4             198194675 10 + 198332218 CAGGACTTCA
i ponAbe2.chr4             C 0 T 174
s nomLeu3.chr7b            113868452 10 + 115148730 CAGAACTTCT
i nomLeu3.chr7b            C 0 T 34
s macFas5.chr5             189178285 10 + 189454096 CAGAACATCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178596987  5 + 178775436 CAGAA-----
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=43824.000000
s hg38.chr4_KI270925v1_alt    408816 47 +    555799 CCAAGGATCAGCCCCCAAATCAGCCAGAACTTC-TCCAGGGATCAGCC
s panTro4.chr4             193121362 47 + 193495092 CCAAGGTTCAGCTCCCAAATCAGCCGGAACTTC-TCCAAGGATCAGCT
i panTro4.chr4             C 0 T 34
s ponAbe2.chr4             198194511 48 + 198332218 CCAAGGATCAGCTCCCAAATCAGCCAGGACTTCACCCAGGCATCAGCT
i ponAbe2.chr4             T 174 C 0
s nomLeu3.chr7b            113868428 47 + 115148730 CCAAGGATCAGCTCCCAAATCAGCCAGAACTTC-TCCAAGGATCAGCT
i nomLeu3.chr7b            T 34 C 0
s macFas5.chr5             189178295 46 + 189454096 CCCAGGACCAGCCCCCAAATCA-CCAGAACTTT-CCCCAGGACCAGCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178596992 46 + 178775436 CCAAGAATCAG-CCCCAAATCATTCAGAACTTT-CCCCAGGACCATCC
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=56677.000000
s hg38.chr4_KI270925v1_alt    408863 55 +    555799 CCCAAATCAGTCAGAACTTCTCCAAGG-ATCAGCTTCCAAATCAACCAGAACTTCT
s panTro4.chr4             193121375 55 + 193495092 CCCAAATCAGCCGGAACTTCTCCAAGG-ATCAGCTCCCAAATCAGCCAGAACTTCT
i panTro4.chr4             T 34 C 0
s ponAbe2.chr4             198194559 56 + 198332218 CCCAAATCAGCCAGGACTTCACCCAGGCATCAGCTCCCAAATCAGCCAGGACTTCA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868475 55 + 115148730 CCCAAATCGGCCAGAACTTATCCAAGG-ATCAGCTCCCAAATCAGCCAGAACTTAT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189178341 54 + 189454096 CCCAAATCATTCAGAACTTCTCCCAGA-ATCAGCTCCCAAATCA-CCAGAACTTCC
i macFas5.chr5             C 0 T 263
s papAnu2.chr5             178597038 54 + 178775436 CCCAAATCATTCAGAACTTCTCCCAGG-ACCAGCTCCCAAATCA-CCAGAACATCC
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=65617.000000
s hg38.chr4_KI270925v1_alt    408918 76 +    555799 CCAAGG-ATCAGCTCCCAAATCAACCAGAACTTC-TCCAAGGTTCAGCTTCCAAATCAACCAGAACTTCTCCAAGG-AT
s panTro4.chr4             193121430 76 + 193495092 CCAAGG-ATTAGCTCCCAAATCAACCAGAACTTC-TCCAGGGATCAGCTCCCAAATCAACCAGAGCTTCTCCAAGG-AT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194615 79 + 198332218 CCCAGGCATCAGCTCCCAAATCAGCCAGGACTTCACCCAGGCATCAGCTCCCAAATCAGCCAGGACTTCACCCAGGCAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868530 76 + 115148730 CCAAGG-ACCAGCTCCAAAATCAGCCAGAACTTC-TCCAAGGATCAGCTCCCAAATCGGCCAGAACTTTTCCCAGG-AT
i nomLeu3.chr7b            C 0 T 102
s macFas5.chr5             189178132 70 + 189454096 CCAAGG-ACCAGCTCCCAAATCAGCCAGAA------CCAAGAATCAG-CCCCAAATCATTCAGAACTTTCCCCAGG-AC
i macFas5.chr5             T 263 C 0
s papAnu2.chr5             178597092 74 + 178775436 CCCAGG-ACCAGCTCCCAAATCA-CCAGAACTTC-CCCCAGGACCAGCCCCCAAATCA-CCAGAACTTCTCCCAGG-ac
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=51439.000000
s hg38.chr4_KI270925v1_alt    408994 48 +    555799 CAGCCCCCAAATCAGCCAGAACTTC-TCCAGGGATCAGCCCCCAAATCA
s panTro4.chr4             193121506 48 + 193495092 CAGCTCCCAAATCAACCAGAACTTC-TCCAAGGATCAGCCCCCAAATCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194694 49 + 198332218 CAGCTCCCAAATCAGCCAGGACTTCACCCAGGCATCAGCTCCCAAATCA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868504 48 + 115148730 CAGCTCCCAAATCAGCCAGAACTTA-TCCAAGGACCAGCTCCAAAATCA
i nomLeu3.chr7b            T 102 C 0
s macFas5.chr5             189178202 48 + 189454096 CAGCCCCCAAATCATTCAGAACTTC-CCCCAGGACCAGCCCCCAAATCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597166 47 + 178775436 cagcccccaaatca-ccagaacttc-ccccaggaccagcccccaaatca
i papAnu2.chr5             C 0 T 166
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=23705.000000
s hg38.chr4_KI270925v1_alt    409042 34 +    555799 CCCAGAACTTC-TCCAAGGATCAGCTCCCAAATTA
s panTro4.chr4             193121554 34 + 193495092 ACCAGAACTTC-TCCAGGGATCAGCTCCCAAATCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194743 35 + 198332218 GCCAGGACTTCACCCAGGCATCAGCTCCCAAATCA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868552 34 + 115148730 GCCAGAACTTC-TCCAAGGATCAGCTCCCAAATCG
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189178250 34 + 189454096 TTCAGAACTTC-TCCCAGAATCAGCTCCCAAATCA
i macFas5.chr5             C 0 T 35
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e papAnu2.chr5             178597213 166 + 178775436 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=9462.000000
s hg38.chr4_KI270925v1_alt    409076 20 +    555799 GTCAGAACTTCTCCAAGGAT
s panTro4.chr4             193121588 20 + 193495092 GCCAGAACTTCTCCAGGGAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194778 14 + 198332218 GCCAGGACTTCACC------
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868586 20 + 115148730 GCCAGAACTTTTCCCAGGAT
i nomLeu3.chr7b            C 0 T 170
s papAnu2.chr5             178597047 20 + 178775436 TTCAGAACTTCTCCCAGGAC
i papAnu2.chr5             T 166 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e macFas5.chr5             189178284 35 + 189454096 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=7083.000000
s hg38.chr4_KI270925v1_alt    409096 13 +    555799 CAGCTTCCAAATC
s panTro4.chr4             193121608 13 + 193495092 CAGCTCCCAAATC
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113868436 13 + 115148730 CAGCTCCCAAATC
i nomLeu3.chr7b            T 170 C 0
s papAnu2.chr5             178597067 13 + 178775436 CAGCTCCCAAATC
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e macFas5.chr5             189178284 35 + 189454096 T
e rheMac3.chr5             183785080 243 + 184069350 T
e ponAbe2.chr4             198194792  0 + 198332218 C

a score=7803.000000
s hg38.chr4_KI270925v1_alt    409109 14 +    555799 AACCACAACTTCTT
s panTro4.chr4             193121621 14 + 193495092 AACCAGAGCTTCTC
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113868449 14 + 115148730 AGCCAGAACTTCTC
i nomLeu3.chr7b            C 0 T 34
s macFas5.chr5             189178249 14 + 189454096 ATTCAGAACTTCTC
i macFas5.chr5             T 35 C 0
s papAnu2.chr5             178597080 13 + 178775436 -ACCAGAACATCCC
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T
e ponAbe2.chr4             198194792  0 + 198332218 C

a score=24559.000000
s hg38.chr4_KI270925v1_alt    409123 21 +    555799 CAGGGATCAGCCCCCAAATCA
s panTro4.chr4             193121635 21 + 193495092 CAAGGATCAGCTCCCAAATCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194792 21 + 198332218 CAGGCATCAGCTCCCAAATCA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868429 21 + 115148730 CAAGGATCAGCTCCCAAATCA
i nomLeu3.chr7b            T 34 C 0
s macFas5.chr5             189178263 21 + 189454096 CCAGAATCAGCTCCCAAATCA
i macFas5.chr5             C 0 T 102
s papAnu2.chr5             178597093 21 + 178775436 CCAGGACCAGCTCCCAAATCA
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=33691.000000
s hg38.chr4_KI270925v1_alt    409144 34 +    555799 GCCAGAACTTCTCCAAGG-ATCAGCTACCAAATCA
s panTro4.chr4             193121656 34 + 193495092 ACCAGAACTTCTCCAAGG-TTCAGCCCCCAAATCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194813 35 + 198332218 GCCAGGACTTCACCCAGGCATTAGCTCCCAAATCA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868450 34 + 115148730 GCCAGAACTTCTCCAAGG-ATCAGCTCCCAAATCG
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189178182 34 + 189454096 TTCAGAACTTTCCCCAGG-ACCAGCCCCCAAATCA
i macFas5.chr5             T 102 C 0
s papAnu2.chr5             178597114 33 + 178775436 -CCAGAACTTCCCCCAGG-ACCAGCCCCCAAATCA
i papAnu2.chr5             C 0 I 33
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=8063.000000
s hg38.chr4_KI270925v1_alt    409178 12 +    555799 GTCAGAACTTCT
s panTro4.chr4             193121690 12 + 193495092 ACCAGAACTTCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194848 12 + 198332218 GCCAGAACTTCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868484 12 + 115148730 GCCAGAACTTAT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189178216 12 + 189454096 TTCAGAACTTCC
i macFas5.chr5             C 0 I 156
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e papAnu2.chr5             178597147 33 + 178775436 I
e rheMac3.chr5             183785080 243 + 184069350 T

a score=10744.000000
s hg38.chr4_KI270925v1_alt    409190 23 +    555799 CCAGGGATCAGCTCCCAAATCAG
s panTro4.chr4             193121702 23 + 193495092 CCAGGGATCAGCTCCCAAATCAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194860 22 + 198332218 CCAAGGATCAGCTCCCAAAT-AG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868496 23 + 115148730 CCAAGGATCAGCTCCCAAATCAG
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e papAnu2.chr5             178597147 33 + 178775436 I
e macFas5.chr5             189178228 156 + 189454096 I
e rheMac3.chr5             183785080 243 + 184069350 T

a score=59641.000000
s hg38.chr4_KI270925v1_alt    409213 53 +    555799 CCAGAACTTCTCCAAGGATCAGCTCCCAAATCAACCAGAACTTCTCCAAGGAT
s panTro4.chr4             193121725 53 + 193495092 CCAGAACTTCTCCAAGGATCAGCTCCCAAATCAACCAAAGCTTCTCCAAGGAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194882 53 + 198332218 CCAGAACTTCTCCAAGGATCAGCTCCCAAATCAGCCAGAACTTCTCCAAGGAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868519 53 + 115148730 CCAGAACTTATCCAAGGACCAGCTCCAAAATCAGCCAGAACTTCTCCAAGGAT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189178384 53 + 189454096 CCAGAACTTCCCCCAGGACCAGCCCCCAAATCATTCAGAACTTCTCCCAGGGT
i macFas5.chr5             I 156 T 268
s papAnu2.chr5             178597180 52 + 178775436 ccagaacttcccccaggaccagcccccaaatca-ccagaacttcccccaggac
i papAnu2.chr5             I 33 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=15117.000000
s hg38.chr4_KI270925v1_alt    409266 23 +    555799 CAGCTCCCAAATCAACCAGAACT
s panTro4.chr4             193121778 23 + 193495092 CAGCCCCCAAATCAACCAGAACT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194935 23 + 198332218 CAGCTCCCAAATCAGCCAGAAAT
i ponAbe2.chr4             C 0 T 273
s nomLeu3.chr7b            113868572 23 + 115148730 CAGCTCCCAAATCGGCCAGAACT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189178169  4 + 189454096 CAGC-------------------
i macFas5.chr5             T 268 C 0
s papAnu2.chr5             178597232 23 + 178775436 cagcccccaAATCATTCAGAACT
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=753.000000
s hg38.chr4_KI270925v1_alt    409289 2 +    555799 TC
s panTro4.chr4             193121801 2 + 193495092 TC
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113868595 2 + 115148730 TT
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178597255 2 + 178775436 TC
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742 0 -  59632846 C
e calJac3.chr3             190636851 0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e macFas5.chr5             189178173 0 + 189454096 C
e rheMac3.chr5             183785080 243 + 184069350 T
e ponAbe2.chr4             198194958 273 + 198332218 T

a score=2422.000000
s hg38.chr4_KI270925v1_alt    409291 3 +    555799 TCC
s panTro4.chr4             193121803 3 + 193495092 TCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194685 3 + 198332218 CCC
i ponAbe2.chr4             T 273 C 0
s nomLeu3.chr7b            113868597 3 + 115148730 TCC
i nomLeu3.chr7b            C 0 T 34
s papAnu2.chr5             178597257 3 + 178775436 TCC
i papAnu2.chr5             C 0 T 114
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742 0 -  59632846 C
e calJac3.chr3             190636851 0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e macFas5.chr5             189178173 0 + 189454096 C
e rheMac3.chr5             183785080 243 + 184069350 T

a score=10369.000000
s hg38.chr4_KI270925v1_alt    409294 20 +    555799 ATGCATCGGCTCCCAAATTA
s panTro4.chr4             193121806 20 + 193495092 AGGGATCAGCTCCCAAATCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194688 20 + 198332218 AGGCATCAGCTCCCAAATCA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868566 20 + 115148730 AAGGATCAGCTCCCAAATCG
i nomLeu3.chr7b            T 34 C 0
s macFas5.chr5             189178173  9 + 189454096 -----------CCCAAATCA
i macFas5.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e papAnu2.chr5             178597260 114 + 178775436 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=18415.000000
s hg38.chr4_KI270925v1_alt    409314 20 +    555799 ATCAGAACTTCTCCAAGG-AT
s panTro4.chr4             193121826 20 + 193495092 ACCAGAACTTCTCCCAGG-AT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194708 21 + 198332218 GCCAGGACTTCACCCAGGCAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868586 20 + 115148730 GCCAGAACTTTTCCCAGG-AT
i nomLeu3.chr7b            C 0 T 34
s macFas5.chr5             189178182 20 + 189454096 TTCAGAACTTTCCCCAGG-AC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597146 20 + 178775436 ACCAGAACTTCTCCCAGG-ac
i papAnu2.chr5             T 114 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=32994.000000
s hg38.chr4_KI270925v1_alt    409334 34 +    555799 CAGCCCCCAAATCAACCAGAACTTC-TCCAGGGAT
s panTro4.chr4             193121846 34 + 193495092 CAGCTCCCAAATCAGCCAGAACTTC-TCCAGGGAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194729 35 + 198332218 CAGCTCCCAAATCAGCCAGGACTTCACCCAGGCAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868572 34 + 115148730 CAGCTCCCAAATCGGCCAGAACTTT-TCCCAGGAT
i nomLeu3.chr7b            T 34 T 178
s macFas5.chr5             189178202 34 + 189454096 CAGCCCCCAAATCATTCAGAACTTC-CCCCAGGAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597166 33 + 178775436 cagcccccaaatca-ccagaacttc-ccccaggac
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=18158.000000
s hg38.chr4_KI270925v1_alt    409368 26 +    555799 CAGCCCCCAAATCAGCCAGCACTTCT
s panTro4.chr4             193121880 26 + 193495092 CAGCTCCCAAATCAACCAGAACTTCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194764 26 + 198332218 CAGCTCCCAAATCAGCCAGGACTTCA
i ponAbe2.chr4             C 0 I 168
s macFas5.chr5             189178236 26 + 189454096 CAGCCCCCAAATCATTCAGAACTTCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597199 25 + 178775436 cagcccccaaatca-ccagaacttcc
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T
e nomLeu3.chr7b            113868606 178 + 115148730 T

a score=33950.000000
s hg38.chr4_KI270925v1_alt    409394 31 +    555799 CCAGGGATCAGCTCCCAAATCAACCAGAACT
s panTro4.chr4             193121906 31 + 193495092 CCAGGGATCAGCTCCCAAATCATCCAGAACT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194958 31 + 198332218 CCAGGGATCAGCTCCCAAATCAGCCAGAACT
i ponAbe2.chr4             I 168 C 0
s nomLeu3.chr7b            113868428 31 + 115148730 CCAAGGATCAGCTCCCAAATCAGCCAGAACT
i nomLeu3.chr7b            T 178 C 0
s macFas5.chr5             189178262 30 + 189454096 CCCAGAATCAGCTCCCAAATCA-CCAGAACA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597224 31 + 178775436 cccaggaccagcccccaAATCATTCAGAACT
i papAnu2.chr5             C 0 T 295
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=2681.000000
s hg38.chr4_KI270925v1_alt    409425 3 +    555799 TCT
s panTro4.chr4             193121937 3 + 193495092 TCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194989 3 + 198332218 TCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868459 3 + 115148730 TCT
i nomLeu3.chr7b            C 0 T 34
s macFas5.chr5             189178292 3 + 189454096 TCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178596960 3 + 178775436 TCA
i papAnu2.chr5             T 295 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742 0 -  59632846 C
e calJac3.chr3             190636851 0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=111725.000000
s hg38.chr4_KI270925v1_alt    409428 107 +    555799 CCAAGGATTAGCTCCCAAATCAACCAGAACTTCTCCAAGATTCAGCTCCCAAATCAGTCAGAACTTCTCCGAGAATCAGCTCCCAAATCAACCAGAACTTCTCCAAG
s panTro4.chr4             193121940 107 + 193495092 CCAAGGATCAGCTCCCAAATCAACCAAAACTTCTCCAAGGTTCAGCCCCCAAATCAACCAGAACTTCTCCAGGGATCAGCTCCCAAATCAGCCAGAACTTCTCCAAG
i panTro4.chr4             C 0 T 68
s ponAbe2.chr4             198194992 107 + 198332218 CCAAGGATCAGCTCCCAAATCAGCCAGAACTTCTCCAAGGATCAGCTCCCAAATCAGCCAGAACTTCTCCAAGGATCAGCTCCCAAATCAGCCAGAACTTCTCCAAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868428 107 + 115148730 CCAAGGATCAGCTCCCAAATCAGCCAGAACTTCTCCAAGGATCAGCTCCCAAATCGGCCAGAACTTATCCAAGGATCAGCTCCCAAATCAGCCAGAACTTATCCAAG
i nomLeu3.chr7b            T 34 C 0
s macFas5.chr5             189178295 105 + 189454096 CCCAGGACCAGCCCCCAAATCA-CCAGAACTTTCCCCAGGACCAGCCCCCAAATCATTCAGAACTTCTCCCAGAATCAGCTCCCAAATCA-CCAGAACTTCCCCCAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178596963 101 + 178775436 CCAAGGACCAGCTCCCAAATCAGCCAGAA-----CCAAGAATCAG-CCCCAAATCATTCAGAACTTTCCCCAGGACCATCCCCCAAATCATTCAGAACTTCTCCCAG
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742   0 -  59632846 C
e calJac3.chr3             190636851   0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=37354.000000
s hg38.chr4_KI270925v1_alt    409535 37 +    555799 ATTCAGCTCCCAAATCAGTCAGAACTTCTCCAAGGAT
s panTro4.chr4             193121979 37 + 193495092 GTTCAGCCCCCAAATCAACCAGAACTTCTCCAGGGAT
i panTro4.chr4             T 68 C 0
s ponAbe2.chr4             198195099 37 + 198332218 GATCAGCTCCCAAATCAGCCAGAACTTCTCCAAGGAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868535 37 + 115148730 GACCAGCTCCAAAATCAGCCAGAACTTCTCCAAGGAT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189178400 37 + 189454096 GACCAGCCCCCAAATCATTCAGAACTTCTCCCAGGGT
i macFas5.chr5             C 0 T 167
s papAnu2.chr5             178597064 36 + 178775436 GACCAGCTCCCAAATCA-CCAGAACATCCCCCAGGAC
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=24545.000000
s hg38.chr4_KI270925v1_alt    409572 21 +    555799 CAGCTCCCAAATCAGTCAGAA
s panTro4.chr4             193122016 21 + 193495092 CAGCTCCCAAATCAGCCAGAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198195136 21 + 198332218 CAGCTCCCAAATCAGCCAGAA
i ponAbe2.chr4             C 0 I 65
s nomLeu3.chr7b            113868572 21 + 115148730 CAGCTCCCAAATCGGCCAGAA
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189178270 20 + 189454096 CAGCTCCCAAATCA-CCAGAA
i macFas5.chr5             T 167 C 0
s papAnu2.chr5             178597100 20 + 178775436 CAGCTCCCAAATCA-CCAGAA
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=12553.000000
s hg38.chr4_KI270925v1_alt    409593 14 +    555799 CTTCTCCAAGGATG
s panTro4.chr4             193122037 14 + 193495092 CTTCTCCAAGGATG
i panTro4.chr4             C 0 T 238
s ponAbe2.chr4             198195222 14 + 198332218 CTTCTCCAAGGATC
i ponAbe2.chr4             I 65 C 0
s nomLeu3.chr7b            113868593 14 + 115148730 CTTTTCCCAGGATG
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189178290 14 + 189454096 CATCCCCCAGGACC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597120 14 + 178775436 CTTCCCCCAGGACC
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=2255.000000
s hg38.chr4_KI270925v1_alt    409607 2 +    555799 AG
s panTro4.chr4             193121813 2 + 193495092 AG
i panTro4.chr4             T 238 C 0
s ponAbe2.chr4             198195236 2 + 198332218 AG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868607 2 + 115148730 GG
i nomLeu3.chr7b            C 0 T 34
s macFas5.chr5             189178304 2 + 189454096 AG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597134 2 + 178775436 AG
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742 0 -  59632846 C
e calJac3.chr3             190636851 0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=13254.000000
s hg38.chr4_KI270925v1_alt    409609 10 +    555799 CCCCCAAATC
s panTro4.chr4             193121815 10 + 193495092 CTCCCAAATC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198195238 10 + 198332218 CTCCCAAATC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868575 10 + 115148730 CTCCCAAATC
i nomLeu3.chr7b            T 34 C 0
s macFas5.chr5             189178306 10 + 189454096 CCCCCAAATC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597136 10 + 178775436 CCCCCAAATC
i papAnu2.chr5             C 0 T 133
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=12950.000000
s hg38.chr4_KI270925v1_alt    409619 19 +    555799 AACCAGAACTTCTCCAAGG
s panTro4.chr4             193121825 19 + 193495092 AACCAGAACTTCTCCCAGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198195248 19 + 198332218 AGCCAGAACTTCCCAAAGG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868585 19 + 115148730 GGCCAGAACTTTTCCCAGG
i nomLeu3.chr7b            C 0 T 34
s macFas5.chr5             189178316 18 + 189454096 -ACCAGAACTTTCCCCAGG
i macFas5.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e papAnu2.chr5             178597146 133 + 178775436 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=11526.000000
s hg38.chr4_KI270925v1_alt    409638 16 +    555799 TTCAGCTCCCACATCA
s panTro4.chr4             193121844 16 + 193495092 ATCAGCTCCCAAATCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198195267 16 + 198332218 ATCAACTCCCAAATCA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868570 16 + 115148730 ATCAGCTCCCAAATCG
i nomLeu3.chr7b            T 34 C 0
s macFas5.chr5             189178334 16 + 189454096 ACCAGCCCCCAAATCA
i macFas5.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e papAnu2.chr5             178597146 133 + 178775436 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=14941.000000
s hg38.chr4_KI270925v1_alt    409654 14 +    555799 GTCAGAACTTCTCC
s panTro4.chr4             193121860 14 + 193495092 GCCAGAACTTCTCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198195283 14 + 198332218 GCCAGAATTTCTCC
i ponAbe2.chr4             C 0 T 34
s nomLeu3.chr7b            113868586 14 + 115148730 GCCAGAACTTTTCC
i nomLeu3.chr7b            C 0 I 1
s macFas5.chr5             189178350 14 + 189454096 TTCAGAACTTCTCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597013 14 + 178775436 TTCAGAACTTTCCC
i papAnu2.chr5             T 133 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=-1057.000000
s hg38.chr4_KI270925v1_alt    409668 4 +    555799 -AAGG
s panTro4.chr4             193121874 4 + 193495092 -AGGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198195263 4 + 198332218 -AAGG
i ponAbe2.chr4             T 34 C 0
s nomLeu3.chr7b            113868601 3 + 115148730 -AGG-
i nomLeu3.chr7b            I 1 T 176
s macFas5.chr5             189178364 4 + 189454096 CAGA-
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597027 4 + 178775436 CAGG-
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742 0 -  59632846 C
e calJac3.chr3             190636851 0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=11377.000000
s hg38.chr4_KI270925v1_alt    409672 16 +    555799 TTCAGCCCCCAAGTCA
s panTro4.chr4             193121878 16 + 193495092 ATCAGCTCCCAAATCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198195267 16 + 198332218 ATCAACTCCCAAATCA
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189178368 16 + 189454096 ATCAGCTCCCAAATCA
i macFas5.chr5             C 0 T 222
s papAnu2.chr5             178597031 16 + 178775436 ACCATCCCCCAAATCA
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T
e nomLeu3.chr7b            113868604 176 + 115148730 T

a score=4586.000000
s hg38.chr4_KI270925v1_alt    409688 12 +    555799 CCCGGAACTTCT
s panTro4.chr4             193121894 12 + 193495092 ACCAGAACTTCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198195283 12 + 198332218 GCCAGAATTTCT
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178597047 12 + 178775436 TTCAGAACTTCT
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e macFas5.chr5             189178384 222 + 189454096 T
e rheMac3.chr5             183785080 243 + 184069350 T
e nomLeu3.chr7b            113868604 176 + 115148730 T

a score=2000.000000
s hg38.chr4_KI270925v1_alt    409700 2 +    555799 CC
s panTro4.chr4             193121906 2 + 193495092 CC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198195295 2 + 198332218 CC
i ponAbe2.chr4             C 0 T 269
s nomLeu3.chr7b            113868428 2 + 115148730 CC
i nomLeu3.chr7b            T 176 C 0
s papAnu2.chr5             178597059 2 + 178775436 CC
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742 0 -  59632846 C
e calJac3.chr3             190636851 0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e macFas5.chr5             189178384 222 + 189454096 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=6952.000000
s hg38.chr4_KI270925v1_alt    409702 11 +    555799 AAGTTTCAGCT
s panTro4.chr4             193121908 11 + 193495092 AGGGATCAGCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198195028 11 + 198332218 AAGGATCAGCT
i ponAbe2.chr4             T 269 C 0
s nomLeu3.chr7b            113868430 11 + 115148730 AAGGATCAGCT
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178597061 11 + 178775436 CAGGACCAGCT
i papAnu2.chr5             C 0 T 79
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e macFas5.chr5             189178384 222 + 189454096 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=10971.000000
s hg38.chr4_KI270925v1_alt    409713 21 +    555799 CCCAAATCAGTCAGAACTTCT
s panTro4.chr4             193121919 21 + 193495092 CCCAAATCATCCAGAACTTCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198195039 21 + 198332218 CCCAAATCAGCCAGAACTTCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868441 21 + 115148730 CCCAAATCAGCCAGAACTTCT
i nomLeu3.chr7b            C 0 T 34
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e papAnu2.chr5             178597072 79 + 178775436 T
e macFas5.chr5             189178384 222 + 189454096 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=600.000000
s hg38.chr4_KI270925v1_alt    409734 1 +    555799 C
s panTro4.chr4             193121940 1 + 193495092 C
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198195060 1 + 198332218 C
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868428 1 + 115148730 C
i nomLeu3.chr7b            T 34 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742 0 -  59632846 C
e calJac3.chr3             190636851 0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e papAnu2.chr5             178597072 79 + 178775436 T
e macFas5.chr5             189178384 222 + 189454096 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=46666.000000
s hg38.chr4_KI270925v1_alt    409735 46 +    555799 CAAGGATCAGCCCCCAAATCAACCAGAACTTCTCCAAGTTTCAGCT
s panTro4.chr4             193121941 46 + 193495092 CAAGGATCAGCTCCCAAATCAACCAAAACTTCTCCAAGGTTCAGCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198195061 46 + 198332218 CAAGGATCAGCTCCCAAATCAGCCAGAACTTCTCCAAGGATCAGCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868429 46 + 115148730 CAAGGATCAGCTCCCAAATCAGCCAGAACTTCTCCAAGGATCAGCT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189178162 45 + 189454096 CAAGAATCAGC-CCCAAATCATTCAGAACTTTCCCCAGGACCAGCC
i macFas5.chr5             T 222 T 34
s papAnu2.chr5             178596993 45 + 178775436 CAAGAATCAGC-CCCAAATCATTCAGAACTTTCCCCAGGACCATCC
i papAnu2.chr5             T 79 T 34
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=11460.000000
s hg38.chr4_KI270925v1_alt    409781 8 +    555799 CCCAAATC
s panTro4.chr4             193121987 8 + 193495092 CCCAAATC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198195107 8 + 198332218 CCCAAATC
i ponAbe2.chr4             C 0 T 235
s nomLeu3.chr7b            113868475 8 + 115148730 CCCAAATC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189178173 8 + 189454096 CCCAAATC
i macFas5.chr5             T 34 C 0
s papAnu2.chr5             178597004 8 + 178775436 CCCAAATC
i papAnu2.chr5             T 34 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742 0 -  59632846 C
e calJac3.chr3             190636851 0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=59002.000000
s hg38.chr4_KI270925v1_alt    409789 55 +    555799 AGTCAGAACTTCTCCAAGGATCAGCCCCCAAATCAACCAGAACTTCTCCAAGGAT
s panTro4.chr4             193121995 55 + 193495092 AACCAGAACTTCTCCAGGGATCAGCTCCCAAATCAGCCAGAACTTCTCCAAGGAT
i panTro4.chr4             C 0 T 649
s ponAbe2.chr4             198194880 55 + 198332218 AGCCAGAACTTCTCCAAGGATCAGCTCCCAAATCAGCCAGAACTTCTCCAAGGAT
i ponAbe2.chr4             T 235 C 0
s nomLeu3.chr7b            113868483 55 + 115148730 GGCCAGAACTTATCCAAGGATCAGCTCCCAAATCAGCCAGAACTTATCCAAGGAC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189178181 55 + 189454096 ATTCAGAACTTTCCCCAGGACCAGCCCCCAAATCATTCAGAACTTCCCCCAGGAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597012 55 + 178775436 ATTCAGAACTTTCCCCAGGACCATCCCCCAAATCATTCAGAACTTCTCCCAGGAC
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=15397.000000
s hg38.chr4_KI270925v1_alt    409844 23 +    555799 CAGCTCCCAAATCAACCAGAACT
s ponAbe2.chr4             198194935 23 + 198332218 CAGCTCCCAAATCAGCCAGAAAT
i ponAbe2.chr4             C 0 I 65
s nomLeu3.chr7b            113868538 23 + 115148730 CAGCTCCAAAATCAGCCAGAACT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189178236 23 + 189454096 CAGCCCCCAAATCATTCAGAACT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597067 22 + 178775436 CAGCTCCCAAATCA-CCAGAACA
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T
e panTro4.chr4             193122050 649 + 193495092 T

a score=5931.000000
s hg38.chr4_KI270925v1_alt    409867 8 +    555799 TCTCCAAG
s ponAbe2.chr4             198195023 8 + 198332218 TCTCCAAG
i ponAbe2.chr4             I 65 C 0
s nomLeu3.chr7b            113868561 8 + 115148730 TCTCCAAG
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189178259 8 + 189454096 TCTCCCAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597089 8 + 178775436 TCCCCCAG
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742 0 -  59632846 C
e calJac3.chr3             190636851 0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T
e panTro4.chr4             193122050 649 + 193495092 T

a score=38570.000000
s hg38.chr4_KI270925v1_alt    409875 37 +    555799 TTTCAGCTCCCAAATCAGTCAGAACTTCTCCAAGGAT
s panTro4.chr4             193121401 37 + 193495092 GATCAGCTCCCAAATCAGCCAGAACTTCTCCAAGGAT
i panTro4.chr4             T 649 C 0
s ponAbe2.chr4             198195031 37 + 198332218 GATCAGCTCCCAAATCAGCCAGAACTTCTCCAAGGAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868569 37 + 115148730 GATCAGCTCCCAAATCGGCCAGAACTTTTCCCAGGAT
i nomLeu3.chr7b            C 0 T 68
s macFas5.chr5             189178267 36 + 189454096 AATCAGCTCCCAAATCA-CCAGAACATCCCCCAGGAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597097 36 + 178775436 GACCAGCTCCCAAATCA-CCAGAACTTCCCCCAGGAC
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=51567.000000
s hg38.chr4_KI270925v1_alt    409912 50 +    555799 CAGCCCCCAAATCACCTGGAACTTCTCCAAGGATCAGCCCCCAAATCAAC
s panTro4.chr4             193121438 50 + 193495092 TAGCTCCCAAATCAACCAGAACTTCTCCAGGGATCAGCTCCCAAATCAAC
i panTro4.chr4             C 0 T 142
s ponAbe2.chr4             198195068 50 + 198332218 CAGCTCCCAAATCAGCCAGAACTTCTCCAAGGATCAGCTCCCAAATCAGC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868538 50 + 115148730 CAGCTCCAAAATCAGCCAGAACTTCTCCAAGGATCAGCTCCCAAATCGGC
i nomLeu3.chr7b            T 68 C 0
s macFas5.chr5             189178303 49 + 189454096 CAGCCCCCAAATCA-CCAGAACTTTCCCCAGGACCAGCCCCCAAATCATT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597133 48 + 178775436 CAGCCCCCAAATCA-CCAGAACTTCTCCCAGGaccagcccccaaatca-c
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=12541.000000
s hg38.chr4_KI270925v1_alt    409962 16 +    555799 CAGAACTTCTCCAAGG
s ponAbe2.chr4             198195118 16 + 198332218 CAGAACTTCTCCAAGG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868588 16 + 115148730 CAGAACTTTTCCCAGG
i nomLeu3.chr7b            C 0 T 34
s macFas5.chr5             189178352 16 + 189454096 CAGAACTTCTCCCAGA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597181 16 + 178775436 cagaacttcccccagg
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T
e panTro4.chr4             193121488 142 + 193495092 T

a score=9628.000000
s hg38.chr4_KI270925v1_alt    409978 12 +    555799 TTCAGCTCCCAA
s ponAbe2.chr4             198195134 12 + 198332218 ATCAGCTCCCAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868570 12 + 115148730 ATCAGCTCCCAA
i nomLeu3.chr7b            T 34 C 0
s macFas5.chr5             189178368 12 + 189454096 ATCAGCTCCCAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597197 12 + 178775436 accagcccccaa
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T
e panTro4.chr4             193121488 142 + 193495092 T

a score=11880.000000
s hg38.chr4_KI270925v1_alt    409990 13 +    555799 ATCAGCCAGAACT
s panTro4.chr4             193121346 13 + 193495092 ATCAGTCAGAACT
i panTro4.chr4             T 142 C 0
s ponAbe2.chr4             198195146 13 + 198332218 ATCAGCCAGAAAT
i ponAbe2.chr4             C 0 T 34
s nomLeu3.chr7b            113868582 13 + 115148730 ATCGGCCAGAACT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189178380 12 + 189454096 ATCA-CCAGAACT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597209 12 + 178775436 atca-ccagaact
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=9416.000000
s hg38.chr4_KI270925v1_alt    410003 9 +    555799 TCCCCAAGG
s panTro4.chr4             193121359 9 + 193495092 TCTCCAAGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198195125 9 + 198332218 TCTCCAAGG
i ponAbe2.chr4             T 34 C 0
s nomLeu3.chr7b            113868595 9 + 115148730 TTTCCCAGG
i nomLeu3.chr7b            C 0 T 102
s macFas5.chr5             189178392 9 + 189454096 TCCCCCAGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597221 9 + 178775436 tcccccagg
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742 0 -  59632846 C
e calJac3.chr3             190636851 0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=24163.000000
s hg38.chr4_KI270925v1_alt    410012 23 +    555799 TTCAGCCCCCAATTCACCCAGAA
s panTro4.chr4             193121368 23 + 193495092 TTCAGCTCCCAAATCAGCCGGAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198195134 23 + 198332218 ATCAGCTCCCAAATCAGCCAGAA
i ponAbe2.chr4             C 0 T 102
s nomLeu3.chr7b            113868502 23 + 115148730 ATCAGCTCCCAAATCAGCCAGAA
i nomLeu3.chr7b            T 102 C 0
s macFas5.chr5             189178401 23 + 189454096 ACCAGCCCCCAAATCATTCAGAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597230 23 + 178775436 accagcccccaAATCATTCAGAA
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=9025.000000
s hg38.chr4_KI270925v1_alt    410035 7 +    555799 CTTCTCC
s panTro4.chr4             193121391 7 + 193495092 CTTCTCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198195055 7 + 198332218 CTTCTCC
i ponAbe2.chr4             T 102 C 0
s nomLeu3.chr7b            113868525 7 + 115148730 CTTATCC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189178424 7 + 189454096 CTTCTCC
i macFas5.chr5             C 0 T 101
s papAnu2.chr5             178597253 7 + 178775436 CTTCTCC
i papAnu2.chr5             C 0 T 256
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742 0 -  59632846 C
e calJac3.chr3             190636851 0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=42086.000000
s hg38.chr4_KI270925v1_alt    410042 53 +    555799 AATGATCAGCCCCCAAATCAACCAGAACTTCTCCAAGGTTCAGCTCCCAAATC
s panTro4.chr4             193121398 53 + 193495092 AAGGATCAGCTCCCAAATCAGCCAGAACTTCTCCAAGGATTAGCTCCCAAATC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198195062 53 + 198332218 AAGGATCAGCTCCCAAATCAGCCAGAACTTCTCCAAGGATCAGCTCCCAAATC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868532 53 + 115148730 AAGGACCAGCTCCAAAATCAGCCAGAACTTCTCCAAGGATCAGCTCCCAAATC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189178330 53 + 189454096 CAGGACCAGCCCCCAAATCATTCAGAACTTCTCCCAGAATCAGCTCCCAAATC
i macFas5.chr5             T 101 T 210
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e papAnu2.chr5             178597260 256 + 178775436 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=8641.000000
s hg38.chr4_KI270925v1_alt    410095 19 +    555799 AACCAGAACTTCTCCAAGG
s panTro4.chr4             193121451 19 + 193495092 AACCAGAACTTCTCCAGGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198195115 19 + 198332218 AGCCAGAACTTCTCCAAGG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868585 19 + 115148730 GGCCAGAACTTTTCCCAGG
i nomLeu3.chr7b            C 0 T 136
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e papAnu2.chr5             178597260 256 + 178775436 T
e macFas5.chr5             189178383 210 + 189454096 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=3342.000000
s hg38.chr4_KI270925v1_alt    410114 7 +    555799 TTCAGCT
s panTro4.chr4             193121470 7 + 193495092 ATCAGCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198195134 7 + 198332218 ATCAGCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868468 7 + 115148730 ATCAGCT
i nomLeu3.chr7b            T 136 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742 0 -  59632846 C
e calJac3.chr3             190636851 0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e papAnu2.chr5             178597260 256 + 178775436 T
e macFas5.chr5             189178383 210 + 189454096 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=17337.000000
s hg38.chr4_KI270925v1_alt    410121 16 +    555799 CCCACATCAGTCAGAA
s panTro4.chr4             193121477 16 + 193495092 CCCAAATCAACCAGAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198195141 16 + 198332218 CCCAAATCAGCCAGAA
i ponAbe2.chr4             C 0 T 199
s nomLeu3.chr7b            113868475 16 + 115148730 CCCAAATCGGCCAGAA
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189178173 16 + 189454096 CCCAAATCATTCAGAA
i macFas5.chr5             T 210 C 0
s papAnu2.chr5             178597004 16 + 178775436 CCCAAATCATTCAGAA
i papAnu2.chr5             T 256 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=2600.000000
s hg38.chr4_KI270925v1_alt    410137 5 +    555799 CTTCT
s panTro4.chr4             193121493 5 + 193495092 CTTCT
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113868491 5 + 115148730 CTTAT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189178189 5 + 189454096 CTTTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597020 5 + 178775436 CTTTC
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742 0 -  59632846 C
e calJac3.chr3             190636851 0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T
e ponAbe2.chr4             198195157 199 + 198332218 T

a score=35830.000000
s hg38.chr4_KI270925v1_alt    410142 34 +    555799 CCAAGGTTCAGCCCCCAAGTCACCCGGAACTTCT
s panTro4.chr4             193121498 34 + 193495092 CCAAGGATCAGCTCCCAAATCAACCAGAACTTCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194958 34 + 198332218 CCAGGGATCAGCTCCCAAATCAGCCAGAACTTCT
i ponAbe2.chr4             T 199 T 34
s nomLeu3.chr7b            113868496 34 + 115148730 CCAAGGATCAGCTCCCAAATCAGCCAGAACTTAT
i nomLeu3.chr7b            C 0 T 102
s macFas5.chr5             189178194 34 + 189454096 CCCAGGACCAGCCCCCAAATCATTCAGAACTTCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597025 34 + 178775436 CCCAGGACCATCCCCCAAATCATTCAGAACTTCT
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=1500.000000
s hg38.chr4_KI270925v1_alt    410176 1 +    555799 C
s panTro4.chr4             193121532 1 + 193495092 C
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194958 1 + 198332218 C
i ponAbe2.chr4             T 34 C 0
s nomLeu3.chr7b            113868428 1 + 115148730 C
i nomLeu3.chr7b            T 102 C 0
s macFas5.chr5             189178228 1 + 189454096 C
i macFas5.chr5             C 0 T 67
s papAnu2.chr5             178597059 1 + 178775436 C
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742 0 -  59632846 C
e calJac3.chr3             190636851 0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=22422.000000
s hg38.chr4_KI270925v1_alt    410177 20 +    555799 CAAGGATCAGCCCCCAAATC
s panTro4.chr4             193121533 20 + 193495092 CAAGGATCAGCCCCCAAATC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194959 20 + 198332218 CAGGGATCAGCTCCCAAATC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868429 20 + 115148730 CAAGGATCAGCTCCCAAATC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189178162 19 + 189454096 CAAGAATCAGC-CCCAAATC
i macFas5.chr5             T 67 C 0
s papAnu2.chr5             178597060 20 + 178775436 CCAGGACCAGCTCCCAAATC
i papAnu2.chr5             C 0 T 76
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=17891.000000
s hg38.chr4_KI270925v1_alt    410197 26 +    555799 AACCAGAACTTCTCCAAGTTTCAGCT
s panTro4.chr4             193121553 26 + 193495092 AACCAGAACTTCTCCAGGGATCAGCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194979 26 + 198332218 AGCCAGAACTTCTCCAAGGATCAGCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868449 26 + 115148730 AGCCAGAACTTCTCCAAGGATCAGCT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189178181 26 + 189454096 ATTCAGAACTTTCCCCAGGACCAGCC
i macFas5.chr5             C 0 T 34
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e papAnu2.chr5             178597080 76 + 178775436 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=60528.000000
s hg38.chr4_KI270925v1_alt    410223 55 +    555799 CCCAAATCAGTCAGAACTTCTCCAAGGATCAGCCCCCAAATCACCCGGAACTTCT
s panTro4.chr4             193121579 55 + 193495092 CCCAAATCAGCCAGAACTTCTCCAGGGATCAGCTCCCAAATCAACCAGAGCTTCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198195005 55 + 198332218 CCCAAATCAGCCAGAACTTCTCCAAGGATCAGCTCCCAAATCAGCCAGAACTTCT
i ponAbe2.chr4             C 0 T 102
s nomLeu3.chr7b            113868475 55 + 115148730 CCCAAATCGGCCAGAACTTATCCAAGGATCAGCTCCCAAATCAGCCAGAACTTAT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189178173 55 + 189454096 CCCAAATCATTCAGAACTTTCCCCAGGACCAGCCCCCAAATCATTCAGAACTTCC
i macFas5.chr5             T 34 C 0
s papAnu2.chr5             178597004 55 + 178775436 CCCAAATCATTCAGAACTTTCCCCAGGACCATCCCCCAAATCATTCAGAACTTCT
i papAnu2.chr5             T 76 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=36354.000000
s hg38.chr4_KI270925v1_alt    410278 34 +    555799 CCAAGGATCAGCCCCCAAGTCAACCAGAACTTCT
s panTro4.chr4             193121634 34 + 193495092 CCAAGGATCAGCTCCCAAATCAACCAGAACTTCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194958 34 + 198332218 CCAGGGATCAGCTCCCAAATCAGCCAGAACTTCT
i ponAbe2.chr4             T 102 T 34
s nomLeu3.chr7b            113868530 34 + 115148730 CCAAGGACCAGCTCCAAAATCAGCCAGAACTTCT
i nomLeu3.chr7b            C 0 T 136
s macFas5.chr5             189178228 34 + 189454096 CCCAGGACCAGCCCCCAAATCATTCAGAACTTCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597059 33 + 178775436 CCCAGGACCAGCTCCCAAATCA-CCAGAACATCC
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=36003.000000
s hg38.chr4_KI270925v1_alt    410312 34 +    555799 CCAAGGTTCAGCTCCCAAATCAGCCAGAACTTCC
s panTro4.chr4             193121668 34 + 193495092 CCAAGGTTCAGCCCCCAAATCAACCAGAACTTCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194958 34 + 198332218 CCAGGGATCAGCTCCCAAATCAGCCAGAACTTCT
i ponAbe2.chr4             T 34 T 34
s nomLeu3.chr7b            113868428 34 + 115148730 CCAAGGATCAGCTCCCAAATCAGCCAGAACTTCT
i nomLeu3.chr7b            T 136 T 34
s macFas5.chr5             189178262 33 + 189454096 CCCAGAATCAGCTCCCAAATCA-CCAGAACATCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597092 33 + 178775436 CCCAGGACCAGCTCCCAAATCA-CCAGAACTTCC
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=36468.000000
s hg38.chr4_KI270925v1_alt    410346 34 +    555799 CCAAGGTTCAGCCCCCAAATCACCCAGAACTTCT
s panTro4.chr4             193121702 34 + 193495092 CCAGGGATCAGCTCCCAAATCAACCAGAACTTCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194958 34 + 198332218 CCAGGGATCAGCTCCCAAATCAGCCAGAACTTCT
i ponAbe2.chr4             T 34 C 0
s nomLeu3.chr7b            113868428 34 + 115148730 CCAAGGATCAGCTCCCAAATCAGCCAGAACTTCT
i nomLeu3.chr7b            T 34 T 34
s macFas5.chr5             189178295 33 + 189454096 CCCAGGACCAGCCCCCAAATCA-CCAGAACTTTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597125 33 + 178775436 CCCAGGACCAGCCCCCAAATCA-CCAGAACTTCT
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=37379.000000
s hg38.chr4_KI270925v1_alt    410380 34 +    555799 CCAATGATCAGCCCCCAAATCAACCAGAACTTCT
s panTro4.chr4             193121736 34 + 193495092 CCAAGGATCAGCTCCCAAATCAACCAAAGCTTCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198194992 34 + 198332218 CCAAGGATCAGCTCCCAAATCAGCCAGAACTTCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868428 34 + 115148730 CCAAGGATCAGCTCCCAAATCAGCCAGAACTTCT
i nomLeu3.chr7b            T 34 T 34
s macFas5.chr5             189178328 34 + 189454096 CCCAGGACCAGCCCCCAAATCATTCAGAACTTCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597158 33 + 178775436 CCCAGGaccagcccccaaatca-ccagaacttcc
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=6546.000000
s hg38.chr4_KI270925v1_alt    410414 8 +    555799 CCAAGTTT
s panTro4.chr4             193121770 8 + 193495092 CCAAGGAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198195026 8 + 198332218 CCAAGGAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868428 8 + 115148730 CCAAGGAT
i nomLeu3.chr7b            T 34 C 0
s macFas5.chr5             189178362 8 + 189454096 CCCAGAAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597191 8 + 178775436 cccaggac
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742 0 -  59632846 C
e calJac3.chr3             190636851 0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T
e rheMac3.chr5             183785080 243 + 184069350 T

a score=8911.000000
s hg38.chr4_KI270925v1_alt    410422 5 +    555799 CAGCT
s panTro4.chr4             193121778 5 + 193495092 CAGCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198195034 5 + 198332218 CAGCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868436 5 + 115148730 CAGCT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183784837 5 + 184069350 CAGCT
i rheMac3.chr5             T 243 C 0
s macFas5.chr5             189178370 5 + 189454096 CAGCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597199 5 + 178775436 cagcc
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742 0 -  59632846 C
e calJac3.chr3             190636851 0 - 190850796 C
e chlSab2.chr7             135532481 231 + 135778131 T

a score=21392.000000
s hg38.chr4_KI270925v1_alt    410427 8 +    555799 CCCAAATC
s panTro4.chr4             193121783 8 + 193495092 CCCAAATC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198195039 8 + 198332218 CCCAAATC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868441 8 + 115148730 CCCAAATC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183784842 8 + 184069350 CCCAAATC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189178375 8 + 189454096 CCCAAATC
i macFas5.chr5             C 0 T 251
s papAnu2.chr5             178597204 8 + 178775436 cccaaatc
i papAnu2.chr5             C 0 T 252
s chlSab2.chr7             135532250 8 + 135778131 CCCAAATC
i chlSab2.chr7             T 231 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742 0 -  59632846 C
e calJac3.chr3             190636851 0 - 190850796 C

a score=9909.000000
s hg38.chr4_KI270925v1_alt    410435 10 +    555799 AACCAGAACT
s panTro4.chr4             193121791 10 + 193495092 AACCAGAACT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198195047 10 + 198332218 AGCCAGAACT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868449 10 + 115148730 AGCCAGAACT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183784850  9 + 184069350 AGCCAGAAC-
i rheMac3.chr5             C 0 C 0
s chlSab2.chr7             135532258  9 + 135778131 -ACCAGAACT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e papAnu2.chr5             178597212 252 + 178775436 T
e macFas5.chr5             189178383 251 + 189454096 T

a score=2681.000000
s hg38.chr4_KI270925v1_alt    410445 3 +    555799 TCT
s panTro4.chr4             193121801 3 + 193495092 TCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198195057 3 + 198332218 TCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868459 3 + 115148730 TCT
i nomLeu3.chr7b            C 0 T 34
s papAnu2.chr5             178596960 3 + 178775436 TCA
i papAnu2.chr5             T 252 C 0
s chlSab2.chr7             135532267 3 + 135778131 TCC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742 0 -  59632846 C
e calJac3.chr3             190636851 0 - 190850796 C
e macFas5.chr5             189178383 251 + 189454096 T
e rheMac3.chr5             183784859 0 + 184069350 C

a score=12180.000000
s hg38.chr4_KI270925v1_alt    410448 6 +    555799 CCAAGG
s panTro4.chr4             193121804 6 + 193495092 CCAGGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198195060 6 + 198332218 CCAAGG
i ponAbe2.chr4             C 0 I 91
s nomLeu3.chr7b            113868428 6 + 115148730 CCAAGG
i nomLeu3.chr7b            T 34 C 0
s rheMac3.chr5             183784859 5 + 184069350 -CAAGA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189178132 6 + 189454096 CCAAGG
i macFas5.chr5             T 251 C 0
s papAnu2.chr5             178596963 6 + 178775436 CCAAGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135532270 6 + 135778131 CCCAGG
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742 0 -  59632846 C
e calJac3.chr3             190636851 0 - 190850796 C

a score=30382.000000
s hg38.chr4_KI270925v1_alt    410454 26 +    555799 ATCAGCTCCCAAATCAACCAGAACTT
s panTro4.chr4             193121810 26 + 193495092 ATCAGCTCCCAAATCAACCAGAACTT
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113868434 26 + 115148730 ATCAGCTCCCAAATCAGCCAGAACTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183784864 25 + 184069350 ATCAGC-CCCAAATCATTCAGAACTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189178138 23 + 189454096 ACCAGCTCCCAAATCAGCCAGAA---
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178596969 23 + 178775436 ACCAGCTCCCAAATCAGCCAGAA---
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135532276 24 + 135778131 ACCAGCCCCCAAATCA-CCAGAA-CT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e ponAbe2.chr4             198195066 91 + 198332218 I

a score=57147.000000
s hg38.chr4_KI270925v1_alt    410480 33 +    555799 CTCCAAGGATCAGCTCGCAAATCAGCCAGAACT
s panTro4.chr4             193121836 33 + 193495092 CTCCCAGGATCAGCTCCCAAATCAGCCAGAACT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198195157 33 + 198332218 ATCCAAGGATCAGCTCCCAAATCAGCCAGAACT
i ponAbe2.chr4             I 91 C 0
s nomLeu3.chr7b            113868460 33 + 115148730 CTCCAAGGATCAGCTCCCAAATCGGCCAGAACT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183784889 33 + 184069350 TCCCCAGGACCAGCCCCCAAATCATTCAGAACT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189178161 30 + 189454096 --CCAAGAATCAG-CCCCAAATCATTCAGAACT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178596992 30 + 178775436 --CCAAGAATCAG-CCCCAAATCATTCAGAACT
i papAnu2.chr5             C 0 T 62
s chlSab2.chr7             135532300 32 + 135778131 TCCCCAGGACCAGCCCCCAAATCA-CCAGAACT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C

a score=40116.000000
s hg38.chr4_KI270925v1_alt    410513 26 +    555799 TCTCCAAGGATCAGCTCCCAAGTCA--G
s panTro4.chr4             193121869 26 + 193495092 TCTCCAGGGATCAGCTCCCAAATCA--A
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198195190 26 + 198332218 TCTCCAAGGATCAGCTCCCAAATCA--G
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868493 26 + 115148730 TATCCAAGGATCAGCTCCCAAATCA--G
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183784922 25 + 184069350 TCTCCCAGAATCAGCTCCCAAATCA---
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189178191 26 + 189454096 TTCCCCAGGACCAGCCCCCAAATCAT--
i macFas5.chr5             C 0 I 67
s papAnu2.chr5             178596960 26 + 178775436 TCACCAAGGACCAGCTCCCAAATCA-G-
i papAnu2.chr5             T 62 C 0
s chlSab2.chr7             135532332 25 + 135778131 TCCCCCAGGACCAGCCCCCAAATCA---
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C

a score=83671.000000
s hg38.chr4_KI270925v1_alt    410539 49 +    555799 CCAGAACTTCTCCAAGGATCAGCCCCCAAATCAGCCAGAACTTCTCCAA
s panTro4.chr4             193121895 49 + 193495092 CCAGAACTTCTCCAGGGATCAGCTCCCAAATCATCCAGAACTTCTCCAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198195216 49 + 198332218 CCAGAACTTCTCCAAGGATCAGCTCCCAAATCAGCCAGAACTTCCCAAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868519 49 + 115148730 CCAGAACTTATCCAAGGACCAGCTCCAAAATCAGCCAGAACTTCTCCAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183784947 48 + 184069350 CCAGAACATCCCCCAGGACCAGCCCCCAAATCA-CCAGAACTTTCCCCA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189178284 48 + 189454096 CCAGAACATCCCCCAGGACCAGCCCCCAAATCA-CCAGAACTTTCCCCA
i macFas5.chr5             I 67 C 0
s papAnu2.chr5             178596986 43 + 178775436 CCAGAA-----CCAAGAATCAG-CCCCAAATCATTCAGAACTTTCCCCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135532357 47 + 135778131 CCAGAACTTC-CCCAGGACCAGCCCCCAAATCA-CCAGAACTTCCCCCA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C

a score=54025.000000
s hg38.chr4_KI270925v1_alt    410588 38 +    555799 GGTTCAGCTCCCAAATCATTCAGAACTTCTCCAAGGAT
s panTro4.chr4             193121944 38 + 193495092 GGATCAGCTCCCAAATCAACCAAAACTTCTCCAAGGTT
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113868568 38 + 115148730 GGATCAGCTCCCAAATCGGCCAGAACTTTTCCCAGGAT
i nomLeu3.chr7b            C 0 T 34
s rheMac3.chr5             183784995 38 + 184069350 GGACCAGCCCCCAAATCATACAGAACTTCTCCCAGAAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189178332 38 + 189454096 GGACCAGCCCCCAAATCATTCAGAACTTCTCCCAGAAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597029 38 + 178775436 GGACCATCCCCCAAATCATTCAGAACTTCTCCCAGGAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135532404 37 + 135778131 GGACCAGCCCCCAAATCAC-CAGAACTTCCCCCAGGAC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e ponAbe2.chr4             198195265  0 + 198332218 C

a score=23130.000000
s hg38.chr4_KI270925v1_alt    410626 14 +    555799 CAGCTCCCAAATCA
s panTro4.chr4             193121982 14 + 193495092 CAGCCCCCAAATCA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113868572 14 + 115148730 CAGCTCCCAAATCG
i nomLeu3.chr7b            T 34 C 0
s rheMac3.chr5             183785033 14 + 184069350 CAGCTCCCAAATCA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189178370 14 + 189454096 CAGCTCCCAAATCA
i macFas5.chr5             C 0 T 68
s papAnu2.chr5             178597067 13 + 178775436 CAGCTCCCAAATC-
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135532441 14 + 135778131 CAGCCCCCAAATCA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e ponAbe2.chr4             198195265  0 + 198332218 C

a score=27452.000000
s hg38.chr4_KI270925v1_alt    410640 20 +    555799 ACCAGACCTTCTCCAGGGAT
s panTro4.chr4             193121996 20 + 193495092 ACCAGAACTTCTCCAGGGAT
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113868586 20 + 115148730 GCCAGAACTTTTCCCAGGAT
i nomLeu3.chr7b            C 0 T 46
s rheMac3.chr5             183785047 19 + 184069350 -CCAGAACATCCCCCAGGAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189178316 20 + 189454096 ACCAGAACTTTCCCCAGGAC
i macFas5.chr5             T 68 C 0
s papAnu2.chr5             178597080 20 + 178775436 ACCAGAACATCCCCCAGGAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135532455 19 + 135778131 -CCAGAACTTCCCCCAGGAC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e ponAbe2.chr4             198195265  0 + 198332218 C

a score=18329.000000
s hg38.chr4_KI270925v1_alt    410660 14 +    555799 CAGTTCCCAAATCA
s panTro4.chr4             193122016 14 + 193495092 CAGCTCCCAAATCA
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183785066 14 + 184069350 CAGCCCCCAAATCA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189178336 14 + 189454096 CAGCCCCCAAATCA
i macFas5.chr5             C 0 I 34
s papAnu2.chr5             178597100 14 + 178775436 CAGCTCCCAAATCA
i papAnu2.chr5             C 0 I 99
s chlSab2.chr7             135532474 14 + 135778131 CAGCCCCCAAATCA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742  0 -  59632846 C
e calJac3.chr3             190636851  0 - 190850796 C
e nomLeu3.chr7b            113868606 46 + 115148730 T
e ponAbe2.chr4             198195265  0 + 198332218 C

a score=100.000000
s hg38.chr4_KI270925v1_alt    410674 1 +    555799 G
s panTro4.chr4             193122030 1 + 193495092 G
i panTro4.chr4             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742 0 -  59632846 C
e calJac3.chr3             190636851 0 - 190850796 C
e chlSab2.chr7             135532488 0 + 135778131 C
e papAnu2.chr5             178597114 99 + 178775436 I
e macFas5.chr5             189178350 34 + 189454096 I
e rheMac3.chr5             183785080 0 + 184069350 C
e nomLeu3.chr7b            113868606 46 + 115148730 T
e ponAbe2.chr4             198195265 0 + 198332218 C

a score=9025.000000
s hg38.chr4_KI270925v1_alt    410675 7 +    555799 CCAGAAA
s panTro4.chr4             193122031 7 + 193495092 CCAGAAC
i panTro4.chr4             C 0 C 0
s rheMac3.chr5             183785080 7 + 184069350 CCAGAAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189178384 7 + 189454096 CCAGAAC
i macFas5.chr5             I 34 C 0
s papAnu2.chr5             178597213 7 + 178775436 ccagaac
i papAnu2.chr5             I 99 C 0
s chlSab2.chr7             135532488 7 + 135778131 CCAGAAC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742 0 -  59632846 C
e calJac3.chr3             190636851 0 - 190850796 C
e nomLeu3.chr7b            113868606 46 + 115148730 T
e ponAbe2.chr4             198195265 0 + 198332218 C

a score=5172.000000
s hg38.chr4_KI270925v1_alt    410682 4 +    555799 -TTCT
s panTro4.chr4             193122038 4 + 193495092 -TTCT
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113868560 4 + 115148730 -TTCT
i nomLeu3.chr7b            T 46 C 0
s rheMac3.chr5             183785087 5 + 184069350 TTTCC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189178391 5 + 189454096 TTCCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597220 5 + 178775436 ttccc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135532495 5 + 135778131 TTCCC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742 0 -  59632846 C
e calJac3.chr3             190636851 0 - 190850796 C
e ponAbe2.chr4             198195265 0 + 198332218 C

a score=5600.000000
s hg38.chr4_KI270925v1_alt    410686 2 +    555799 CC
s panTro4.chr4             193122042 2 + 193495092 CC
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113868564 2 + 115148730 CC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183785092 2 + 184069350 CC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189178396 2 + 189454096 CC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597225 2 + 178775436 cc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135532500 2 + 135778131 CC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190636851 2 - 190850796 CC
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e canFam3.chr16             18082742 0 -  59632846 C
e ponAbe2.chr4             198195265 0 + 198332218 C

a score=-7552.000000
s hg38.chr4_KI270925v1_alt    410688 2 +    555799 AG-
s panTro4.chr4             193122044 2 + 193495092 AA-
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113868566 2 + 115148730 AA-
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183785094 1 + 184069350 A--
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189178398 1 + 189454096 A--
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597227 1 + 178775436 a--
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135532502 1 + 135778131 A--
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190636853 1 - 190850796 A--
i calJac3.chr3             C 0 I 1
s canFam3.chr16             18082742 2 -  59632846 -AG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e ponAbe2.chr4             198195265 0 + 198332218 C

a score=9297.000000
s hg38.chr4_KI270925v1_alt    410690 4 +    555799 GGAT
s panTro4.chr4             193122046 4 + 193495092 GGAT
i panTro4.chr4             C 0 I 472
s ponAbe2.chr4             198195265 4 + 198332218 GGAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868568 4 + 115148730 GGAT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183785095 4 + 184069350 GGAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189178399 4 + 189454096 GGAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597228 4 + 178775436 ggac
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135532503 4 + 135778131 GGAC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190636855 4 - 190850796 GCAC
i calJac3.chr3             I 1 C 0
s canFam3.chr16             18082744 4 -  59632846 GTAG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I

a score=728099.000000
s hg38.chr4_KI270925v1_alt    410694 319 +    555799 CAGCTCCCAAATCAGCCAGAACTTCTCCCAGGGTGGGAGATC-------TTTTGATCTCATGCAGTCCCTTCATAGTGCTCAGCATTTTACCCAGAAAAGCATCAGTCACCCGTAAAGGCTAAGTTTTAAACACTGTAAAACCAGAAAATGTTATATACACGACTGTGTGAGGCGTGAACGTGGGGA----AGTGAGTGTGAAAGTGCATGAATGTGAGCATTCAAGAAGGCATGAGTGTGCGAGGGAACCCCACCAACAAAGCAAGC-AAGAGGACCTGGCCTCTTTCT-ATTTGCGAC---AACCCTTAATGGGGCTCAGAGATTTCCCA-CTG
s ponAbe2.chr4             198195269 319 + 198332218 CAACTCCCAAATCAGCCAGAATTTCTCCCAGGATGGGGGATC-------TTTTGATCTCATGCAGTCCCTTCACAGTGCTCAGCATTTTACCCAGAAAAGCATCAGTCACCCCTAAAGGCTAAGTTTTAAACACTGTAAAACCAGAAAATGTTATATACACGACTGTGTGAGGCACGAAGGTGGGGA----AGTGAGTGTAAAAGTGCATGAAGGTGAGCATTCGAGAAGGTATGCGTGTGCGAGGGAACCCCACCGACAAAACAAGC-AACAGGACCTGGCCTCTTTCT-AATTGCAAC---GACCCTAAATGGGGCTCAGAGATTTCCAG-CTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868572 320 + 115148730 CAGCTCCCAAATCGGCCAGAACTTTTCCCAGGATGGGGGATC-------TTTTGATCTCATGCAGTCCCTTCACAGTGCTCAGCATTTTACCCAGAAAAGCATCAGTCACCCCTAAAGGCTAAGTTTTAAACACTATAAAACCAGAAAATGTTATATACACGACTGTGTGAGGCGTGAAGGTGGGGA----AGTGAGTGTGAAAGTGCATGAATGTGAGCATTCGAGAAGGCGTGAGTGTGCGAGGGAACTCCACCGACAAAACAAGCAAAGAGGACCTGGCCGCTTTCT-AATTGCGAC---GACCCTAAATGGGGCTCAGAGATTTCCCG-CTG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183785099 322 + 184069350 CAGCCCCCAAATCATTCAGAACTTCTCCCAGGGTAGGGGATC-------TTTTGATCTCATGCAGTCCCTTCACAGTCCTCAGCATTTTACCCAGAAAAGCGTCAGTCACCCCTAAAGGCTAAGTTTTAAACACTATGAAACCAGAAAAGGTCACATACACGATCGTGTGC-ATGTGAAGGTGGGGAAGTGAGTGAGTGTGAATGCGCATGAGTGTGAGCATTCAAGAAGGCGTGAGTGTGCGAGAGAATCCCACCGACAAAACAGGCAACGAGGACCTGGCCTCTTTCT-AACTGCGAC---GG-CCTCAGTGGGGCTCAGAGGTTTCCCG-CTG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189178403 322 + 189454096 CAGCCCCCAAATCATTCAGAACTTCTCCCAGGGTAGGGGATC-------TTTTGATCTCATGCAGTCCCTTCACAGTCCTCAGCATTTTACCCAGAAAAGCGTCAGTCACCCCTAAAGGCTAAGTTTTAAACACTATGAAACCAGAAAAGGTCACATACACGATCGTGTGC-ATGTGAAGGTGGGGAAGTGAGTGAGTGTGAATGCGCATGAGTGTGAGCATTCAAGAAGGCGTGAGTGTGCGAGAGAATCCCACCGACAAAACAGGCAACGAGGACCTGGCCTCTTTCT-AACTGCGAC---GG-CCTCAGTGGGGCTCAGAGGTTTCCCG-CTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597232 322 + 178775436 cagcccccaAATCATTCAGAACTTCTCCCAGGGTAGGGGATC-------TTTTGATCTCATGCAGTCCCTTCACAGTCCTCAGCATTTTACCCAGAAAAGCATCAGTCACCCCTAAAGGCTAAGTTTTAAACACTATGAAACCAGAAAATGTCACATACACGATCGTGTGC-GTGTGAAGGTGGGGAAGTGAGTGAGTGTGAACGCACATGAGTGTGAGCATTCAAGAAGGCGTGAGTGTGCGAGAGAATCCCACCGACAAAACAGGCAACGAGGACCTGGCCTCTTTCT-AACTGCGAC---GG-CCTCAGTGGGGCTCAGAGGTTTCCCG-CTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135532507 321 + 135778131 CAGCCCCCAAATCA-CCAGAACTTCTCCCAGGGTAGGGGATC-------TTTTGATCTCATGCAGTCCCTTCACAGTCCTCAGCATTTTACCCAGAAAAGCGTCAGTCACCCCTAAAGGCTAAGTTTTAAACACTATGAAACCAGAAAATGTCACATACACGATCGTGTGC-GTGTGAAGGTGGGGAAGTGAGTGAGTGTGAACGCGCATGAGTGTGAGCATTCAAGAAGGCGTGAGTGTGCGAGAGAATCCCACCGACGAAACAGGCAACGAGGACCTGGCCTCTTTCT-AACTGCGAC---GG-CCTCAGTGGGGCTCAGAGGTTTCCCA-CTG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190636859 309 - 190850796 CAGCTCCCAAATCAGCCACAACTTCTCCCGGTGTGTGGGATC-------TTTTGATTTCAAGCAGTCCCTTCACGGCACTCGGCGGATTACGCAGCAAAGCATCAGTCACCCCTAAAGGCTGACTTTCAAACAC------------ACATGTTATATACGTGATTGTGTGAGGTGTGAAGGCGGGA-----AGTGAGTGTGAAAGTACAAGCGTGTGAGCATTTGAGAAAGTGTCAGTGTGCGAGAGGTTCCCACCAAGAAAACACGCAAGGAGGACCCGGCCTCTTTCTCAAAGGCAAA---GGCCCTAAATGGAGTGCAGAGACTTCCTGACTG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18082748 320 -  59632846 CAGTTCCAAAATCGCCCTCAACTTCTCTCCAAATCTGGGATCTTGAAGATTTTGATCTCCTGTAGTCACTTAACATGGCTCAGTAGGTTACACAGGAAA-CCTCAGTCACCTCCAAATGCTAGGTTCTAAATGCTATGGAACCAGAAAATGTTATA-----GAGTACATAAGATACGAAGGTGTGA-----AGAAAGTATGAAAGTACAAGAGCACGAACAGTCAAGAATACA-AAGTGTGGGTGACAATCTTGCAGACGAAAGGAGGACAGACAA---GGCCTCTTTCT-AATCACCACTAAGGCTGTAAGTGGAGCTCAGAGATATCCTGGCTT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87786295 1388 - 129401213 I
e panTro4.chr4             193122050 472 + 193495092 I

a score=503104.000000
s hg38.chr4_KI270925v1_alt    411013 186 +    555799 CGTTCCTTACCCTCTTAGTGCTGCACACCGGCCT----CT----ACAAAGCCATAAGCAAGGAAAAGAAATAGAGGATCGTGAGTTTAAACAGTTCAGAATAAATTGGTATTGGGTGTTAAGGGCTTAAATTCCACTATCTATGTTTACCGTATCTTAAGTTGAATCAAAACAAAATCCAACA---ACACAATGTTA
s ponAbe2.chr4             198195588 186 + 198332218 CGTTCCTTACCCTCTTAGCGCTGCACACCGGCCT----CT----ACAAAGCCATAAGCAAAGAAAAGAAGTAGAGGATCATGAGTTTAAACAGTTCAAAATAAATTGGTATTGGGTGTTAAGGGCTTAAATTCCACTATCCATGTTTACCGTGTCTTAAGTTGAATTAAAACAAAATCCAACA---ACACAATGTTA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113868892 186 + 115148730 CATTCCTTACCCTCTTAGCGCTGCACACAGGCCT----CT----ATAAAGCCAAAAGCAAAGAAAAGAAATAGAGGATCATGAGTTTAAACAGTTCAAAATAAATTAGTATTGGGTGTTAAGGGCTTAAATTCCACTATCCATGTTTACAGTGTCTTAAGTTGAATTAAAACAAAATCCAACA---ACACAATGTTA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183785421 185 + 184069350 CATTCCTTAACCTCCCAGTGCAGCACACAGGCCT----CT----GTGAAGCCATAAGCAAAGAAAAGAAATAGAGGATCATGAGTTTAAACTGTTCAAAATAAATTGGTATTGGGTGTTAAGGGCTTAAATTCCAATA-CCGTGTTTGCGGTGTCTTAAGTTGAATTAAAACAAAATCCAACA---ACACAATGTTA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189178725 185 + 189454096 CATTCCTTAACCTCCCAGCGCAGCACACAGGCCT----CT----GTGAAGCCATAAGCAAAGAAAAGAAATAGAGGATCATGAGTTTAAACTGTTCAAAATAAATTGGTATTGGGTGTTAAGGGCTTAAATTCCACTA-CCGTGTTTGCGGTGTCTTAAGTTGAATTAAAACAAAATCCAACA---ACACAATGTTA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597554 185 + 178775436 CATTCCTTAACCTCCCAGCGCGGCACACAGGCCT----CT----GTGAAGCcacaagcaaagaaaagaaatagaggatCATGAGTTTAAACTGTTCAGAATAAACTGGTATTGGGTGTTAAGGGCTTAAATTCCACTA-CCGTGTTTGCGGTGTCTTAAgttgaattaaaacaaaatccaaca---acACAATGTTA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135532828 185 + 135778131 CGTTCCTTAACCTCCCAGCGCGGCACACAGGCCT----CT----GTGAAGTCATAAGCAAAGAAAAGAAATAGAGGATCATGAGTTTAAACCGTTCAAAATAAATTGGTATTGGGTGTTAAGGGCTTAAATTCCACTA-CCCTGTTTGCAGTGTCTTAAGTTGAATTAAAACAAAATCCAACA---ACACAATGTTA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190637168 179 - 190850796 CATCCTTCAACCTCTCAGCGCTGCCCACAGGGCT----CT----ATAAAGCCATAAGCAAAGAAAACAAACAGAGGATCACGAGCTTAAACCATTCAGAATAAAGCGGCATTGGGTGTTAAAGGCTTAAATT-------CCATGTTTACAGCCTTTTAAGTTGAATTAAAACGAAATCTGACA---ACACAATGTTA
i calJac3.chr3             C 0 I 9
s mm10.chr8                 87787683 182 - 129401213 CATCCCTCAGCCTCTTAGTACTGCTCCGGTATCTCCAACT----ATAAGGACAC-AGAGAAGAAAGATAATAGAGAACCATGAATGTAGGCAGTTTTAAATAAGTTCGTATTGGATGGTAACGGTCT-AATTCCTCTCTGCATGTCTGCAGTGCCTT-AGCTGAGTTAACACAAAAGCAAGCA-----ACAATG---
i mm10.chr8                I 1388 C 0
s canFam3.chr16             18083068 175 -  59632846 CATTCCTAAATCTCTTAGCACTGCTCCCAGGTCT----CTACCCATCAAGCTATGACGGAAGACAGACAATAGAGGACCATGAGTT----------AAAATAAATTAGCATTAGGCATTAAAGACCTATATTCCTCCA-CCATGTTTGCAGCATCTCAAGCTGAGTTAAAATGAAATCCGACATGAACTC-------
i canFam3.chr16            C 0 C 0
e panTro4.chr4             193122050 472 + 193495092 I

a score=5388754.000000
s hg38.chr4_KI270925v1_alt    411199 1497 +    555799  
s panTro4.chr4             193122522 1493 + 193495092  
i panTro4.chr4             I 472 C 0
s ponAbe2.chr4             198195774 1491 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113869078 1558 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183785606 1476 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189178910 1476 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178597739 1476 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135533013 1471 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190637356 1539 - 190850796  
i calJac3.chr3             I 9 C 0
s mm10.chr8                 87787865 1504 - 129401213  
i mm10.chr8                C 0 I 4278
s canFam3.chr16             18083243 1632 -  59632846  
i canFam3.chr16            C 0 C 0

a score=733708.000000
s hg38.chr4_KI270925v1_alt    412696 267 +    555799 TCAAAGACACCAATGGTTCACAGACTTCTCTAGGAGCAAAGTATTGCCCTATAGGACACAAAGGAATTGATTTAAGAAACCCTTCAGAAAACTGGTATTGCTTTTATTTTCACTACAAAATAAATATTGAAGTAAATACAAAAAGATGTTCTCCATAATGAT--GTATGAGAACCTGCATGAAGTCAAGCCTGCATTCTGTGGCCACCACAAATTCAAGGCAAGCAGGAC-GCCACAAACTTCACCCTC-CCACTCCCAAGTTTCTGCC---------------------------------------------AA
s panTro4.chr4             193124015 267 + 193495092 TCAAAGACACCCATGGTTCATAGACTTCTCTAGGAGCAAAGTATTGCCCTATAGGACACAAAGGAGTTGATTTAAGAAACCCTTCAGAAAACTGGTATTGCTTTTATTTTCACTACAAAATAAATATTGAAGTAAATACAAAAATATGTTCTCCATAATGAT--GTATGTGAACCTGCATGAAGTCAAGCCTGCATTCTGTGGCCACCACAAATTCAAGGCAAGCAGGAC-GCCACAAACTTCACCCTC-CCACTCCCAAGTTTCTGCC---------------------------------------------AA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198197265 232 + 198332218 TCAAAGACACCCGTGGTTCACAGACTTCTCTAGGAGCAAAGTGTTGCCCTACAGGACACAAAGGAGTTGATTTAAGAAACCCTTCGGAAAATTGGTATTGCTTTTATTTTCACTACAAAATAAATATTGAAGTAAATACAAAAATATGTTCTCCATAATGAT--GTATGTGAACCTGCATTAAGT-----------------------------------CAAGCAGGGC-ACCACAAACTTCACCCTC-CCACTCCCAAGTTTCTGCC---------------------------------------------AA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113870636 219 + 115148730 TCAAAGACACCCGTGGTTCATAGACTTCTCTAGGAGCAAAGTATTGCCCTACAGGACACGAAGCAGTTGATTTAAGACACTCTTCAGAAAACTGGTATTGCTTTTATTTTCACTACAAAATAAATATTGAAGTAAATACAAAAATATGTTCTTCATAATGAT--GTATGTGAACCTGCGTGAAGTCAAGCCTGCACTCTGTGGCCACCACAAATTCAAGAC-----------------------------------------------------------------------------------------------
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183787082 266 + 184069350 TCAAAGACACCCGTGGTTCATAGGCTTCTCTAGGAGCAAAGTATTGCCCTCTAGGACACAAAGGAGTTGATTTAAGAAGCCCTTCAGAAAACTGGTATTGCTTTTATTTTCACTAAAAAATAAATATCAAAGTAAATACAAAAATCAGTTCTCC----TGATTGGTGTGTGAACCTGCATGAAGTCAAGCCTGCACTCTGTGGCCACCACAAATTCAAGACAAGCAGGGCAACAACAAATTTCACCCTC-CCACTCCCAGGTTTCTGTC---------------------------------------------AA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189180386 266 + 189454096 TCAAAGACACCCGTGGTTCATAGGCTTCTCTAGGAGCAAAGTATTGCCCTCTAGGACACAAAGGAGTTGATTTAAGAAACCCTTCAGAAAACTGGTATTGCTTTTATTTTCACTAAAAAATAAATATCAAAGTAAATACAAAAATCAGTTCTCC----TGATTGGTGTGTGAACCTGCATGAAGTCAAGCCTGCACTCTGTGGCCACCACAAATTCAAGACAAGCAGGGCAACAACAAATTTCACCCTC-CCACTCCCAGGTTTCTGTC---------------------------------------------AA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178599215 266 + 178775436 TCAAAGACACCCGTGGTTCATAGGCTTCTCTAGGAGCAAAGTATTGCCCTCTAGGACACAAAGGAGTTGATTTAAGAAACCCTTCAGAAAACTggtattgcttttattttcactaaaaaatatatatcaaagtaaatacaaaaatcagttctcC----TGATTGGTGTGTGAACCTGCATGAAGTCAAGCCTGCACTCTGTGGCCACCACAAATTCAAGACAAGCAGGGCAACAACAAACTTCACCCTC-CCACTCCCAGGTTTCTGTC---------------------------------------------AA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135534484 270 + 135778131 TCAAAGCCACCCATGGTTCATAGGCTTCCCTGGGAGCAAAGTATTGCCCTCTAGGACACAAAGGAGTTGATTTAAGAAACCCTTCAGAAAACTGGTATTGCTTTTATTTTCACTAAAAAATAAATATCAAAGTAAATACAAAAATCAGTTCTCCATAATGATGTATGTGTGAACCTGCATGAAGTCAAGCCTGCACTCTGTGGCCACCACAAATTCAAGGCAAGCAGGGCAACAACAAACTTCACCCTC-CCACTCCCAGGTTTCTGTC---------------------------------------------AA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190638895 311 - 190850796 TCAAAGGCACC-GTGGTTC--AGACTTCTCCAGGAGCAAAGTATTGCTCTACAGGACACAAAAGAGTTGACTGAAGAAACCCTTCAGAAAACTGGTATTGTTTTTATTTTCACTACAAAATAAATATGGAAGTAAATACAAAAATATGTTCTCCATATCGATGTGTGTGTGGACTCTCATGAAAACAAGCCTGCACACTGCAGCAGCCACACATTCAAGGTGAGCAGAGCAACCACAAACTTCACCC-C-CCACTCCCAAGTTTCTTCCTCTGGAAATGGCTCCAAAAGTGATAAGGTATAAACATCTCCCACAAA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18084875 269 -  59632846 TTAAGGATCCCTGTGGGTCACAGACTTTTCTAATAGCAAAGTATTGCTCCATACGACACAAAAGAATTGATTTATGAAGCCCTTCAGAAAACCAGTATTGTTTTCATTTGCTTTATAGACTAAATTTTCAAGGAAATACAAAAATCTGTTTTCCTCAAAGATATACACATGAATACCCATGAATACAAGCTTGTGTGCTATGATAAT--GTAATAAAAAGCAAACAAAATGGGGATCAAACTTACCCTCTCCATCTCCAAGCTTCTCTC---------------------------------------------AA
i canFam3.chr16            C 0 I 86
e mm10.chr8                 87789369 4278 - 129401213 I

a score=132539.000000
s hg38.chr4_KI270925v1_alt    412963 45 +    555799 ATTAAGCCCCAAAGTTTAGGGACAGAAAGCAAAATATCCTAGATT
s panTro4.chr4             193124282 45 + 193495092 ATTAAGCCCCAAAGTTTAGGGACAGAAAGCAAAATATCCTAGATT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198197497 45 + 198332218 ATTAAGCCCCAAAGTTCAGGGACAGAGAGCAAAATATCCTAGATT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113870855 42 + 115148730 ---AAGCCCCAAAGTTCAGGGACCGAGAGCAAAACATCCTAGATT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183787348 45 + 184069350 ATCAAGCCCCAAAGGTTAGGGACAGAGAGCAAAATATCCTAGATT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189180652 45 + 189454096 ATCAAGCCCCAAAGGTTAGGGACAGAGAGCAAAATATCCTAGATT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178599481 45 + 178775436 ATCAAGCCCCAAAGGTTAGGGACAGAGAGCAAAATATCCTAGATT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135534754 45 + 135778131 ATCAAGCCCCAAAGGTTAGGGACAGAGAGCAAAATATCCTGGATT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190639206 45 - 190850796 ATCAAGCTCcaaaggttagggatggagagcaaactatcctagatt
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87789369 4278 - 129401213 I
e canFam3.chr16             18085144 86 -  59632846 I

a score=22586.000000
s hg38.chr4_KI270925v1_alt    413008 10 +    555799 CCTGTAACTC
s panTro4.chr4             193124327 10 + 193495092 CCTGTAACTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198197542 10 + 198332218 CCTGTAACTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113870897 10 + 115148730 CCTTTAACTC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183787393 10 + 184069350 CCTTTAACTC
i rheMac3.chr5             C 0 I 295
s macFas5.chr5             189180697 10 + 189454096 CCTTTAACTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178599526 10 + 178775436 CCTTTaactc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135534799 10 + 135778131 CCCTTAACTC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87789369 4278 - 129401213 I
e canFam3.chr16             18085144 86 -  59632846 I
e calJac3.chr3             190639251  0 - 190850796 C

a score=73273.000000
s hg38.chr4_KI270925v1_alt    413018 84 +    555799 CTGGtttgtttttttttttttttttttttttgagacggagtcttgctctcttgctctctca-ccaggctggagtgcagtcgcgtg
s panTro4.chr4             193124337 65 + 193495092 CTG-----------tttttttttttttttttgagacggag--------tcttgttctctca-ccaggctggagtgcagtcgtgtg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198197552 70 + 198332218 TCt------ttttttttttttttttttttttgagatggag--------tcctgctctgtca-ccaggcttgagtgcaatcacttg
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113870907 75 + 115148730 ttt-tttttttttttttttttttttttttttgagacggag--------tcttgctctgtcg-ccaggctggagtgcagtcgcttg
i nomLeu3.chr7b            C 0 I 10
s macFas5.chr5             189180707 57 + 189454096 ----------Attttt----------tttttgagacggag--------tctccctctgtcgcccaggctggagtgcagtgacatg
i macFas5.chr5             C 0 I 213
s papAnu2.chr5             178599536 67 + 178775436 ----------attttttgtttgtttgtttttgagacggag--------tctccctctgtcgcccaggctggagtgcagcgacatg
i papAnu2.chr5             C 0 I 208
s chlSab2.chr7             135534809 71 + 135778131 ------tttttttttttttttttttttttttgagacggag--------tctccctctgtggcccaggccggagtgcagtgacatg
i chlSab2.chr7             C 0 I 10
e mm10.chr8                 87789369 4278 - 129401213 I
e canFam3.chr16             18085144 86 -  59632846 I
e calJac3.chr3             190639251  0 - 190850796 C
e rheMac3.chr5             183787403 295 + 184069350 I

a score=31608.000000
s hg38.chr4_KI270925v1_alt    413102 20 +    555799 acagcaacctccacctccca
s panTro4.chr4             193124402 20 + 193495092 acagcaacctccacctccca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198197622 20 + 198332218 accacaacctccacctcccg
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113870992 20 + 115148730 accgcaacctccacctcccg
i nomLeu3.chr7b            I 10 C 0
s macFas5.chr5             189180977 20 + 189454096 actgcaagctccgcctcccg
i macFas5.chr5             I 213 C 0
s papAnu2.chr5             178599811 20 + 178775436 actgcaagctccgcctcccg
i papAnu2.chr5             I 208 C 0
s chlSab2.chr7             135534890 20 + 135778131 actgcaagctccgcctcccg
i chlSab2.chr7             I 10 C 0
e mm10.chr8                 87789369 4278 - 129401213 I
e canFam3.chr16             18085144 86 -  59632846 I
e calJac3.chr3             190639251  0 - 190850796 C
e rheMac3.chr5             183787403 295 + 184069350 I

a score=442736.000000
s hg38.chr4_KI270925v1_alt    413122 204 +    555799 ggttcaagctattctcccgcctcagcctcctgagtagctgggactacaggcatgtgccaccatgcctggctaattt-ttgtatttttagtagagacagggtttcaccatgttggccaggatggtctcaatgtcttgacctcatgatccacccaccttggcctcccaaagtgctgggattacaggtgtgaaccactgtgcccagcc
s panTro4.chr4             193124422 204 + 193495092 ggttcaagctattctcccgcctcagcctcccgagtagctgggactacaggcacgtgccaacatgcccggctaattt-ttgtatttttagtagagacagggtttcaccatgttggccaggatggtctcaatctcctgacctcatgatccacccaccttggcctcccaaagtgctgggattacaggcgtgaaccactgtgcccagcc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198197642 204 + 198332218 ggttcaagctattctcctgcctcagcctcccgagtagctgggactacaggcacgcgccaccatgcccggctaattt-ttgtatttttagtagagacagggtttcaccatgttggccaggatggtctcaatctcttgatctcatgatccacccgccttggcctcccaaagtgctgggattacaggcgtgaaccactgtgcccagcc
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113871012 204 + 115148730 ggttcaagctattctcccgcctcagcctcccgagtagctgggattacaggcatgcaccaccatgcgtggctaattt-ttgtatttttagtagagacagggtttcaccatgttgaccaggatggtctcaatctgttgacctcatgatccacccgccttggactcccaaagcgctgggattacaggcatgaacccctgtgcccagcc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183787698 204 + 184069350 ggttcacgccattctcctgcctcagcctcctgagtagctgggactacaggtgcccgccaccacgcccggctagtttgttatatttttagtagagaccgggtttcaccgtgttagccaggatggtctccatctcctg-ccttgtgatccgcccgccttggcctcccaaagggctgagattacaggcgggagccactgtgtccagcc
i rheMac3.chr5             I 295 C 0
s macFas5.chr5             189180997 204 + 189454096 ggttcacgccattctcctgcctcagcctcctgagtagctgggactacaggtgcccgccaccacgcccggctagtttgttatatttttagtagagacggggtttcaccgtgttagccaggatggtctccatctcctg-ccttgtgatccgcccgccttggcctcccaaagggctgagattacaggcgggagccactgtgtccagcc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178599831 203 + 178775436 ggttcacgccattctcctgcctcagcctcc-gagtagctgggactacaggtgcccgccacgacacccggctagtttgttatatttttagtagagacggggtttcaccgtgttaaccaggatggtctccatctcctg-ccttgtgatccgcccgccttggcctcccaaagggctgagattacaggcgagagccactgtgtccagcc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135534910 203 + 135778131 ggttcccgccattctcctgcctcagcctcctgagtagctgggaccacaggtg-ccgccacgacgcccggctagttttttatatttttagtagagacggggtttcaccgtgttaaccaggatggtctccatctcctg-ccttgtgatccgcccgcctcggcctcccaaagggctgagattacaggcgggagccactgtgtccagcc
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87789369 4278 - 129401213 I
e canFam3.chr16             18085144  86 -  59632846 I
e calJac3.chr3             190639251   0 - 190850796 C

a score=7200.000000
s hg38.chr4_KI270925v1_alt    413326 2 +    555799 CC
s panTro4.chr4             193124626 2 + 193495092 CC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198197846 2 + 198332218 CC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113871216 2 + 115148730 CC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183787902 2 + 184069350 CC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189181201 2 + 189454096 CC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178600034 2 + 178775436 cc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135535113 2 + 135778131 CC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190639251 2 - 190850796 cc
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87789369 4278 - 129401213 I
e canFam3.chr16             18085144 86 -  59632846 I

a score=36144.000000
s hg38.chr4_KI270925v1_alt    413328 10 +    555799 TTTAACTCAT
s panTro4.chr4             193124628 10 + 193495092 TTAAACTCAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198197848 10 + 198332218 TTTAACTCAT
i ponAbe2.chr4             C 0 I 371
s nomLeu3.chr7b            113871218 10 + 115148730 TTTAACTCCT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183787904 10 + 184069350 TTTAACTCAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189181203 10 + 189454096 TTTAACTCAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178600036 10 + 178775436 ttTAACTCAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135535115 10 + 135778131 TTTAACTCAT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190639253 10 - 190850796 tttaactcat
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18085230 10 -  59632846 TTTCACTCAT
i canFam3.chr16            I 86 C 0
e mm10.chr8                 87789369 4278 - 129401213 I

a score=123113.000000
s hg38.chr4_KI270925v1_alt    413338 50 +    555799 TTTGAAATGATTCTCAC-ATAACATATTCACATCAATATTTTCATAACCTA
s panTro4.chr4             193124638 50 + 193495092 TTTGAAATGATTCTCAC-ATAACATATTCACATCAATATTTTCATAACCTA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113871228 50 + 115148730 TTTGAAATGATTCTCAC-ATAACATATTCACATCAATATTTTCATAACCTA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183787914 50 + 184069350 TTTGAAATGATTCCTGC-ATAACATATTCACATAAATATTTTCATAACCTA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189181213 50 + 189454096 TTTGAAATGATTCCTGC-ATAACATATTCACATAAATATTTTCATAACCTA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178600046 50 + 178775436 TTTGAAATGATTCCTGC-ATAACATATTCACGTAAATATTTTCATAACCTA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135535125 50 + 135778131 TTTGAAATGATTCCTGC-ATAACATATTCACATAAATATTTTCATAACCTA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190639263 50 - 190850796 tttgaaATGATTCCCAC-ATAACACATTCACATAAATACTTTCACAATGTA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18085240 45 -  59632846 TGTGAAATAATTCTCTCAATAAGATA-TAAGATAAA-----TCATAACCTT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87789369 4278 - 129401213 I
e ponAbe2.chr4             198197858 371 + 198332218 I

a score=162429.000000
s hg38.chr4_KI270925v1_alt    413388 67 +    555799 AGA-AATTTC-CATTGACCTAGTTTCCTTAATTAACTTGTG-AGAAAAATTCTTATCATT---------------GGATTTCTTT-------
s panTro4.chr4             193124688 67 + 193495092 AGA-ACTTCC-CATTGACCTAGTTTTCTTAATTAACTTGTG-AGAAAAATTCTTATCAGT---------------GGATTTCTTT-------
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113871278 67 + 115148730 AGA-ACTTTC-CATTGATCTAGTTTCCTTAATTAACTTGCG-AGAAAAATTATTATCAGT---------------GGATTTCTTT-------
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183787964 67 + 184069350 AGA-ACTTTC-CATTTATCTAGTTTCCTTAATTAACTTGCG-AGAAAAATTCTTATCAGT---------------GGATTTGTTT-------
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189181263 63 + 189454096 AGA-ACTTTC-CATTTATCTAGTTTCC----TTAACTTGCG-AGAAAAATTCTTATCAGT---------------GGATTTGTTT-------
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178600096 67 + 178775436 AGA-ACTTTC-CATTTATCTAGTTTCCTTAATTAACTTGCG-AGAAAAATTCTTATCAGT---------------GGATTTGTTT-------
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135535175 67 + 135778131 AGA-ACTTTC-CATTTATCTCGTTTCCTTAATTAACTTGCG-AGAAAAATTCTTATCAGT---------------GGATTTGTTT-------
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190639313 67 - 190850796 AGA-ATTTTC-CATTTATCTAGTGTCCTTAATTAACTTGCA-AGAAAAATTTTTATCAGT---------------GGATTTCTTT-------
i calJac3.chr3             C 0 I 300
s mm10.chr8                 87793647 65 - 129401213 agacatttct-cattaa---agtaaccacaATTACCTTACA-ATAAAAATTCTTATCTGT---------------GAATATCTCC-------
i mm10.chr8                I 4278 I 1
s canFam3.chr16             18085285 89 -  59632846 TGT-ACTTTCAAATTTATCTA--TCCATCCATTACCCTGTGAAAAAAAAATCTAAACAGTGGTTTTTTGGGGGAGGGGTTTGTTTTCGTTTT
i canFam3.chr16            C 0 C 0
e ponAbe2.chr4             198197858 371 + 198332218 I

a score=183316.000000
s hg38.chr4_KI270925v1_alt    413455 75 +    555799 TAATTTTCAAAATATATAAATTGA-TGTGCAGATCGATAC-AAAATAACAATTTATGCTTGTTATAAACCCATCTCT
s panTro4.chr4             193124755 75 + 193495092 TAATTTTCAAAATATATAAATTGA-TGTGCAGATAGATAC-AAAATAACAATTTATGCTTGTTATAAACCCATCTCT
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113871345 75 + 115148730 TAATTTTCAAAATATATAAATTGA-TGTGCAGAGAGATAC-AAAATAACAACTTACGCTTGTTGTAAACCCATCCCT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183788031 75 + 184069350 TAATGTTCAAGATATATAAACCAA-TGTGCAGCTAGATAC-AAAATAACAATTTATGCTTCTTAGAAACTGATCTCC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189181326 75 + 189454096 TAATGTTCAAGATATATAAACCAA-TGTGCAGCTAGATAC-AAAATAACAATTTATGCTTCTTAGAAACTGATCTCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178600163 75 + 178775436 TAATGTTCAAGATATATAAACCGA-TGTGCAGCTAGATAC-AAAATAACAATTTATGCTTCTTAGAAACCGATCTCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135535242 75 + 135778131 TAATGTTCAAGATATATAAACCGA-TGTGCAGCTAGATAC-AAAATAACAATTTATGCTTCTTAGAAACCGATCTCC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190639680 75 - 190850796 TAAATTTCAAGGTATATAAATTGA-TGTGCAGATAGATAC-AAAATAACAATTTGTGCTTGTTATAAACGCATCTCT
i calJac3.chr3             I 300 C 0
s mm10.chr8                 87793713 63 - 129401213 AAGTTTTCTAGATATAACCACTGACTGTGCAGAGGGATAT-GAATCAATAATCTATG-------------GATTTGT
i mm10.chr8                I 1 C 0
s canFam3.chr16             18085374 77 -  59632846 TGCATTTCAAGTCCTGTGAAATGACTGTGCAGAGGAATATAAAAATAACAATCTACACTTGTTATCAGTCCACTCCT
i canFam3.chr16            C 0 I 2268
e ponAbe2.chr4             198197858 371 + 198332218 I

a score=44568.000000
s hg38.chr4_KI270925v1_alt    413530 17 +    555799 GCTCAGAGTCCTGGAAA
s panTro4.chr4             193124830 17 + 193495092 GCTCAGAGTCCTGGAAA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113871420 17 + 115148730 GCTCAGAGTCCTGGAAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183788106 17 + 184069350 ACTCAGAGTCCTGGAAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189181401 17 + 189454096 GCTCAGAGTCCTGGAAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178600238 17 + 178775436 GCTCAGAGTCCTGGAAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135535317 17 + 135778131 GCTCAGAGTCCTGGAAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190639755 15 - 190850796 GCTC--AGTCCTGGAAA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87793776 17 - 129401213 GTTCAGCATTCCAGAGA
i mm10.chr8                C 0 C 0
e canFam3.chr16             18085451 2268 -  59632846 I
e ponAbe2.chr4             198197858 371 + 198332218 I

a score=-36192.000000
s hg38.chr4_KI270925v1_alt    413547 66 +    555799 ----GGACATCACAGTGGAAGGCCAAGTGGGCTGCAGGTGGCAGACACAGTTCCTCAGCCTGGACGTCAC
s panTro4.chr4             193124847  9 + 193495092 ----GGACA---------------------------------------------------------TCAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198198229 66 + 198332218 ----GGACGTCACAGTGGAAGGCCAAGTGGGCTGCGGGTGGCGGACACAGTTCCTCAGCCTGGATGTCAC
i ponAbe2.chr4             I 371 C 0
s nomLeu3.chr7b            113871437 16 + 115148730 ----GGACGTCACAGTGGAA--------------------------------------------------
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183788123  9 + 184069350 -------------------------------------------------------------GCAAGTCTC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189181418  9 + 189454096 -------------------------------------------------------------GCAAGTCTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178600255  9 + 178775436 -------------------------------------------------------------GCAAGTCTC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135535334  9 + 135778131 -------------------------------------------------------------GCAAGTCTC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190639770 13 - 190850796 ---------------------------------------------------------GACAGGACGTCAC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87793793 33 - 129401213 GATGGGGTAAAATAATAGAAAGCCCAGTGGACC-------------------------------------
i mm10.chr8                C 0 C 0
e canFam3.chr16             18085451 2268 -  59632846 I

a score=797011.000000
s hg38.chr4_KI270925v1_alt    413613 242 +    555799 AGTGGAAGGCCAAGTGGGCTGCAGG-C----AGTGGACAGAGTTCCTCAGCCTG---G---TCAGTTGCTCCTGGGATGGTGGGTGAGTCAGAACATGTGTCTTTATTTGTCAAGTGGGGGTTAAGCCAGGCATTGTCTAAGGTGCCTCACAGAGTTAATATTCTTTGCTGTGAACTTGCTGCCAA--ATAGTTCATAGGA-CAGTTTTTATGTTCAGCCAATGGGTAGAAATGTAGCCCAAAGACCTACAACATg
s panTro4.chr4             193124856 242 + 193495092 AGTGGAAGGCCAAGTGGGCTGCAGG-C----AGTGGACAGAGTTCCTCGGCCTG---G---TCAGTTGCTCCTGGGATGGTGGGTGAGTCAGAATGTGCGTCTTTATTTGTCAAGTGGGGGTTAAGCCAGGCATTGTCTAAGGTGCCTCACAGAGTTAATATTCTTTGCTGTGAACTTGCTGCCAA--ATAGTTCATAGGA-CAGTTTTTATGTTCAGCCAATGGGTAGAAATGTAGCCCAAAGACCTACAACATG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198198295 242 + 198332218 AATGGAAGGCCAAGTGGGCTGCAGG-C----AGCGGACAGAGTTCCTCAGCCTG---G---TCAGTTGCTCCTGGGGTGGTGGGTGAGTCAGAACGTGCGTCTTTATTTGTCAAGTGGGGGTTATGACAGGCATTGTCTAAGGTGCCTCACAGAGTTAATATTCTTGGCTTTGAACTTGCTGCCAA--ATAGCTCACAGGA-CAGTTTTTATGTTCAGCCAATGAGTAGAAATGTAGCCCAAAGACCTACAATATG
i ponAbe2.chr4             C 0 I 13
s nomLeu3.chr7b            113871453 235 + 115148730 -------GGCCAAGTGGGCTGCGGG-C----AGGGGACACAGTTCCTCAGCCTG---G---TCCGTTGCTCCTGGGATGGTGAGTGAGTTAGAATGTATGTCTTTATTTGTCAAGTGGGGGTTAAGCCAGGCATTGTCTAAGATGCCTCACAGAGTTAATATTCTTTGCTTTGAACTTGCTGCCAA--ATAGTTCATAGGA-TGGTTTTTATGTTCAGCCAATGAGTAGAAATGTAGCCCAAAGACCTAAAACATG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183788132 242 + 184069350 AATGGAAAGCCAAGTGGGCCGCAGA-C----AGCAGACACAGTTCCTCAGCCTG---G---TCAGTTGCTCCTGAGATGGTGGGTGAGTCAGAACGTGTGTCTCTATTTGTCAAGTGGTGGTTAAGCCAGGCATTATCTGAGGTGCCTCACAGAGTTAATATTCTTTGCTTTGAACTTGCCGCCAA--ATAGTTCATAGGA-CAGTGTTTATGCTCAGCCAATGAGTAGAAATGTAGCCCAAAGACCCACAACATG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189181427 242 + 189454096 AATGGAAAGCCAAGTGGGCCGCAGA-C----AGCAGACACAGTTCCTCAGCCTG---G---TCAGTTGCTCCTGAGATGGTGGGTGAGTCAGAACGTGTGTCTCTATTTGTCAAGTGGTGGTTAAGCCAGGCATTATCTGAGGTGCCTCACAGAGTTAATATTCTTTGCTTTGAACTTGCCGCCAA--ATAGTTCATAGGA-CAGTGTTTATGCTCAGCCAATGAGTAGAAATGTAGCCCAAAGACCCACAACATG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178600264 242 + 178775436 AATGGAAAGCCAAGTGGGCCGCAGA-C----AGCGGACACAGTTCCTCAGCCTG---G---TCAGTTGCTCCTGAGATGGTGGGTGAGTCAGAACGTGTGTCTCTATTTGTCAAGTGGTGGTAAAGCCAGGCATTATCTAAGGTGCCTCACAGAGTTAATATTCTTTGCTTTGAACTTGCCGCCAA--ATAGTTCATAGGA-TAGTGTTTATGCTCAGCCAATGAGTAGAAATGTAGCCCAAAGACCCACAACATg
i papAnu2.chr5             C 0 I 213
s chlSab2.chr7             135535343 242 + 135778131 AGTGGAAAGCCAAGTGTGCCGCAGG-C----AGTGGACACAGTTCCTCAGCCTG---G---TCAGTTGCTCCTGAGATGGTGGGTGAGTCAGAACGTGTGTCTCTATTTGTCAAGTGGTGGTTAAGCCAGGCATTATCTAAGGTGCCTCACAGAGTTAATATTCTTGGCTTTGAACTTGCCGCCAA--ATAGTTCATAGGA-CAGTGTTTATGTTCAGCCAATGAGTAGAAATGTAGCCCAAAGACCCACAACATG
i chlSab2.chr7             C 0 I 11
s calJac3.chr3             190639783 240 - 190850796 AGTGGAAAGCTAAGTGGGCTGCAGG-CAGTGAGTGGACACAGTTCCTCAGCCTG---G---TCAGCTGCTCCTGAGATGGTGGGTGAGTCAGGGCATGTGTCATTATTTGTCAAATGGG------GCCAGGCATTGTCTAAGAGGCCTCACAGAGTTAGTATCCTTTGCTTTGAACTTGCTGCCAC--ATAGTTCACGGGA-CTGTGTTTCTTTTCAGCCAAGGAGTAGAAAAGCAGCCTGAAGACCCACAACGTG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87793826 211 - 129401213 -------------------------------CATAGACCCACTTCTTTGGCCAGAATG---TCCGTTGCTTCTGAGATGAGGGGTCAGTAAGAAC-TCTTCCCACATTTGTCAA----TAGATAAACTAGAAACTCTCCAAGATGCTGCATTTATCCAGTGTTTGTTGCTTGTAGCTCATTACCAC--ATTGTTGACAGAA-CTCTGT---AGTTTGTCCATTGGACAGAAAGCCACACAAAGGGCATAGAAAATG
i mm10.chr8                C 0 C 0
s canFam3.chr16             18087719 227 -  59632846 aatggaaaggctagtggtctggaggac----agCAGACCCAGCTCTTCAGCCCA---GTTATCAATTGCTCCTG------------AGTCCAAACCTG----ACTGTTTGTCAGCAGGGTGTTAAACCAGGTATTATCTTACATGCCTCACAGAGTTAATACTCTTTGCTTTGAACTTGCTACCAAATATAGTTTCTAGAATCTGTCTGTAT-TTCATCCAGCAAATAGGAAAGTAGGCTAAAGATGAACA-----
i canFam3.chr16            I 2268 C 0

a score=82142.000000
s hg38.chr4_KI270925v1_alt    413855 38 +    555799 gggcagggaatcagggcaggggaccagggcagggatcc
s panTro4.chr4             193125098 38 + 193495092 GGGCAGGGAATCAGGGCAGGGGACCAGGGCAGGGATCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198198550 38 + 198332218 gggcagggaaccagggcagggaaccagggcagggatcc
i ponAbe2.chr4             I 13 C 0
s nomLeu3.chr7b            113871688 38 + 115148730 GGGCAGGGAATCAGGGCAGGGGACCAGGGCAGGGGACC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183788374 37 + 184069350 gggca-gagaccagggcaggggaccagggcgggggacc
i rheMac3.chr5             C 0 I 149
s macFas5.chr5             189181669 37 + 189454096 GGGCA-GAgaccagggcaggggaccagggcgggggacc
i macFas5.chr5             C 0 I 248
s papAnu2.chr5             178600719 37 + 178775436 gggcaggggagcagggcagggaaccagggcagggact-
i papAnu2.chr5             I 213 C 0
s chlSab2.chr7             135535596 38 + 135778131 GGGCGGGGGACCAGGGCAGGGGACCAGGGCGGGGAGCA
i chlSab2.chr7             I 11 I 63
s calJac3.chr3             190640023 21 - 190850796 -------------GGGCAGAGAGCCAGGGCAGGG----
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87794037 27 - 129401213 GTACA-GTCAACAGGACAGGTGACCAAG----------
i mm10.chr8                C 0 C 0
s canFam3.chr16             18087946 26 -  59632846 GAGAAGTCAACCAGGACAGAAGACCA------------
i canFam3.chr16            C 0 C 0

a score=27244.000000
s hg38.chr4_KI270925v1_alt    413893 10 +    555799 agggcagggA
s panTro4.chr4             193125136 10 + 193495092 AGGGCAGGGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198198588 10 + 198332218 agggcaggga
i ponAbe2.chr4             C 0 I 26
s nomLeu3.chr7b            113871726 10 + 115148730 AGGGCAGGGA
i nomLeu3.chr7b            C 0 I 143
s rheMac3.chr5             183788560 10 + 184069350 agggcaggga
i rheMac3.chr5             I 149 C 0
s macFas5.chr5             189181954 10 + 189454096 agggcagggA
i macFas5.chr5             I 248 C 0
s papAnu2.chr5             178600756 10 + 178775436 agggcaggga
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135535697 10 + 135778131 AGGGCAGGGA
i chlSab2.chr7             I 63 C 0
e mm10.chr8                 87794064  0 - 129401213 C
e canFam3.chr16             18087972  0 -  59632846 C
e calJac3.chr3             190640044  0 - 190850796 C

a score=1364365.000000
s hg38.chr4_KI270925v1_alt    413903 430 +    555799 ACCTGCTCTCCCTTGCTGATGGTCTTCACTGTCCTCCTCTCCTTCCTCCCACGTGTCGGGA------------TCAGT-GATGAAGTGGAGGCACCTTT-CAGAGAATGTATCCAGGATCTCCTTCTCCTCTCCTTCAAAAAACAGAAAGCTCGATGTTGTCTTTTATCACATCTGGTATTTGAAAATTTATGTTCTGAT---GAGGCACTGTGCGCAGAAGCAGAACCCGCTGCATCCAATGGTATGCTGC------TATGCTGACCTCGAAG-----TCACTCGCCTTGGACAC--AGGCCGTTAACTTGACATGGTGATTTATTCGCCAATAAGCACATCTCCCATATCACAGATCAGCGA-GTGGAGTGTGCTGCAAATGG--TGTGGTGGCCTTGAACCCCTGAGATATCCTAGAGACATGATGGATGGG-----CTGGCCTGGCCTGTTGTGACTGTGGTGA
s panTro4.chr4             193125146 430 + 193495092 ACCTGCTCTCCTTTGCTGATGGTCTTCACTGTCCTCCTCTCCTTCCTCCCACGTGTTGGGA------------TCAGT-GATGAAGTGGAGGCACATTT-CAGAAAATGTATCCAGGATCTCCTTCTCCTCTCCTTCAAAAAACAGAAAGCTCGATGTTGTCTTTTCTCACATCTGGTATTTGAAAATTTATGTTCTGAT---GAGGCACTGTGCGCAGAAGCAGAACCCGCTGCATCCAATGGTATGCTGC------TATGCTGACCTCGAAG-----TCACTCGCCTTGGACAC--AGGCCGTTAACTTGACATGGTGATTTATTCGCCAATAAGCACATCTCCCATATCACAGATCAGCGA-GTGGAGTGTGCTGCAAATGG--TGTGGTGGCCTTGAACCCCTGAGATATCCTAGAGACATGACGGATGGG-----CTGGCCTGGCCTGTTGTGACTGTGGTGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198198624 438 + 198332218 ACCTGCTCTCCCTTGCTGATGGTCTTCACCGTCCTCCTCTCCTTCCTCCCACGTGTCGGGA------------TCAGT-GAGGAAGTAGAGGCACATTT-CAGAAAATGTATTCAGGGTCTCCTTCGCCTCTCCTTCAAAAAACAGAAAGCTTGATGTTGTCTTTTATCACATCTGGTATTTAAAAATTTATGTTCTGATGTCGAGGCACTGTGCACAGAAGCAGAACCCGCTGCATCCAATGGTACACTGC------TATGCTGACCTCGAAG-----TCACTCACCTCGGACAC--AGGGCGTTAACTTGACATGGTGATTTATTCGCCAATGAGCACATCTCCCATATCACAGATCAGCGA-GTGGAGTGTGCTGCAAATGC--TGCGGTGGCCTCGAACCCCTGAGATATCCTAGAGAGATGATGGATGGGCTGGCCTGGCCTGGCCTGTCATGGCTGTGGTGA
i ponAbe2.chr4             I 26 C 0
s nomLeu3.chr7b            113871879 442 + 115148730 ACCTGCTCTCCCTTGCTGATGGTCTTCACCATCCTCCTCTCCTTCCTCCCACGTATCGGGAtcagtgaggaagtcagt-gaggaagtGGAGGCACATTT-CAGAAAATGTATTCAGGATCTCCT---CCTCTCCTTAAAAAAACAGAAAGCTCGATGTTGTCTTTCATCGCATCTGGTATTTGAAAATTTATGTTCTGATGTCGAGGCACTGTGCGCAGAAGCAGAACCCGCTGCATCCAATGGTAAGCTGC------TATGCTGACCTCGAAG-----TCACTCGCCTTGGACAC--AGGCCATTAACTTGACATGGTGATTTATTTGCCAATGAGCACATCTCCCATATCGCAGATCAGCGA-GTGGAGTGTGCTGCAAATGG--TGCAGTGGCCTCGAACCCCCGAGATATCCTACAGACATGACGGATGGG-----CTGGCCTGGCCTGTCGGGGCTGTGGTGA
i nomLeu3.chr7b            I 143 C 0
s rheMac3.chr5             183788570 435 + 184069350 ACCTGCTCTCCCTTGCTGATGGTCTTCACCGTCCTCCCCTCCTTCCTCCCACGTGTTGGGA------------TCAGT-GAGGGACTGGAGGCACCTTT-CAGAAAATGTATTCAGGATCTCCTTCTCCTCTCCTTCAGAAGACAAAAAGCTTGATGTTGCCTTGTATTGCTTCTGGTATTTGAACACGTATGTTGTGATGACGAGGCTCCGTGCGCAGAAGCAGAACCCACTACATCCAATGTCACGCTGC------TGTGCTGGCCTCCAAG-----TCCCTCACCTTGGACAGACAAGGTGTTAACGTGACAAGGTGATTTATTCGCCAGTGAACACATCTCCCATATCGCAGATCAGTGA-GTGGAGCGTGCTGCAAAAGG--TGCGGTGGCCTCAGACCCCCGAGATATCCTAGAGACGTGAAGGCTGGG-----CTCACCTGGCCTGTTGTGGCTGTGGTGA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189181964 433 + 189454096 ACCTGCTCTCCCTTGCTGATGGTCTTCACCGTCCTCCCCTCCTTCCTCCCACGTGTCGGGA------------TCAGT-GAGGGACTGGAGGCACCTTT-CAGAAAATGTATTCAGGATCTCCTTCTCCTCTCCTTCAGAAGACAAAAAGCTTGATGTTGCCTTGTATTGCTTCTGGTATTTGAACACGTATGTTGTGATGACGAGGCTCCGTGCGCAGAAGCAGAACCCACTACATCCAATGTCACGCTGC------TGTGCTGGCCTCCAAG-----TCCCTCACCTTGGACAG--AGGCTGTTAACGTGACAAGGTGATTTATTCGCCAGTGAACACATCTCCCATATCGCAGATCAGCGA-GTGGAGCGTGCTGCAAAAGG--TGCGGTGGCCTCAGACCCCCGAGATATCCTAGAGACATGAAGGCTGGG-----CTCACCTGGCCTGTTGTGGCTGTGGTGA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178600766 433 + 178775436 ACCTGCTCTCCCTTGCTGATGGTCTTCACcgtcctcccctccttcctcccacatGTCGGGA------------TCAGT-GAGGGACTGGAGGcacattt-cagaaaatgtattcaggatctccttctcctctccttcagaaaacaaaaagcttgATGTTGCCTTGTATTGCTTCTGGTATTTGAATACTTATGTTGTGATGACGAGGCACCATGCGCAGAAGCAGAACCCACTACATCCAATGTCATGCTGC------TGCGCTGACCTCCAAG-----TCACTCACCTTGGACAT--AGGCTGTTAACTTGACAAGGCGATTTATTCGCCAGTGAACACATCTTCCATATCGCAGATCAGTGA-GTGGAGCGTGCTGCAAAAGG--TGCGGTGGCCTCAGACCCCCGAGATATCCTAGAGACGTGAAGGCTGGG-----CTCACCTGGCCTGTTGTGGCTGTGGTGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135535707 433 + 135778131 ACCTGCTCTCCCTTGCTGATGGTCTTCACCGTCCTCCCCGCCTTCCTCCCACGTGTCGGAA------------TCAGT-GAGGGACTGGAGGCACATTT-CAGAAAATGTATTCAGGATCTCCTTCTCCTCTCCTTCAGAAAACAAAAAGCTTGATGTTGTCTTGTATTGCTTCTGGTATTTGAATATTTATGTTCTGATGCCGAGGCACCGTGCGCAGAAGCAGAACCCACTACATCCAATGTCACACTGC------TGCGCTGACCTCCAAG-----TCACTCACCTTGGACAT--AGGCCGTTAACTTGACAAGGTGATTTATTCGCCAGTGAACACATCTCCCATATCGCAGATCAGCGA-GTGGAGCGTGCTGCAAAAGG--TGCGGTGGCCTCAGACCCCCGAGATATCCTAGAGACATGAAGGCTGGG-----CTCACCTGGCCTGTTGTGGCTGTGGTGA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190640044 398 - 190850796 -CCTTCTCTCCCTTGCTGATGCTCTTCACTGTCCTCCCCTCCATCCTTCCACGTGTCAGGA------------TCAGT-GAGGAACTGGAGGCACATTT---------------GGGGTCTACGTCTCCTTTACTTCAAGAAACAAACAGCTCGATGT---CTTTTATCATGTCTGGTATTTGAAAATTTATGTTCTGATGTCGAGGCACTGTGTACAGGAGCAGAACCCG-GGCATCCAATGTTATGCTGC------TATGCTGACCTCCAGG-----TCGCTCGCCTTGGGCAC--GGGTTGTTAACTTGACATGGTGATTTATTGGCCAATGAGCACAGCTCCCATATCACAGACCAGGGA-GTAGAGTATGCTGTAAATGGCACGCAGTGGCCTCGAACCCC------------------TGATGGACGGG-----CTGGCCTGGCCTGCCGTGGCTGTGGTGA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87794064 408 - 129401213 -----CCCTTCTTTGCTGATTGACTCCATCATCCTC----TCTTCATCGTGTGTATCAGAT------------TCATTGGAAGAATTAGAAACTTATAG-GAGGGAATGTGTCCATGTTCTACCTCTCTTC----------AACAGAGAACTACACCTTCTATCCTAACATTTCTCATGCTCAAAAATTTATGTCCTGACACGCAGGTGCTATGTAAAAAAGCATAAACCACTCATTCCAATGACAGACCACACCTATTACA-TGGCCTTTAC------TTAATCGCCTCAAAAAC--AAATCATTAACTTAACACCATAATTTATGCACCTGTTAGCACATGTCATCCATCCTAAATCACAGA-------CATTTTGCTAGTAC--TACAATTGACTTGAACTTCCAAACTAGCATAGAGACAAGACAGATACA----------TTGGTTTGTTATGATTGTGATAA
i mm10.chr8                C 0 I 1442
s canFam3.chr16             18087972 435 -  59632846 ---TGCTCTCCTTTACTGACTCTTTCTGCCATCCGCCT-TTCTTCCCTCTATGTGTCAAAA------------TGATTGGAAGAATTAGAGGCACTTGTAGAGAAAATGTGTTCATGGTCTGTTT---CTCACCTTCAACAAACAAAAAGTTATAAGTTGTCCTTTATCATGTTCAGCATTCAGAAATTTATGTTCCAATGTTGAGGCCCTGTGTAAGGAAGCATAACCTATTGAACGCAATGATAGCCCACACCTGTTGCACTGACCTTCCAGATCATTCTCTGAGCTCAAGTAC--AAACCATTAACTTGACACTGTAATTTATTTGCCTATGAGAGTATCTCAGACATCCCAAATCATGGACATGAAGTGTGCTGTGAAGAG--CACAGTGGCCCTGAACTCTTAAGACATCCTAGAAACATAATGGATAGG----------CTCGCCTGTTATGATTGTGGTAA
i canFam3.chr16            C 0 C 0

a score=1441635.000000
s hg38.chr4_KI270925v1_alt    414333 472 +    555799  
s panTro4.chr4             193125576 470 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198199062 472 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113872321 472 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183789005 477 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189182397 477 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178601199 477 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135536140 467 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190640442 488 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18088407 536 -  59632846  
i canFam3.chr16            C 0 I 203
e mm10.chr8                 87794472 1442 - 129401213 I

a score=206183.000000
s hg38.chr4_KI270925v1_alt    414805 63 +    555799 AAAATCACCAGCTCTGCAAATCTCAACCCAAACAGGAAACTCTCTGCCCCGAAGTAGCACAGA
s panTro4.chr4             193126046 63 + 193495092 AAAATCACCAGCTCTGCAAATCTCAACCCAAACAGGAAACTCTCTGCCCCGAAGTAGCACAGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198199534 63 + 198332218 AAAATCACCAGCTCTGCAAATCCCAACCCAAACAGGAAACTCTCTGCCCCAAAGTAGCACAGA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113872793 63 + 115148730 AAAATCACCAGCTCTGCAAATCCCAACCCAAACAGAAAATTCTCTGCCCCAAAGTAGCACAGA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183789482 61 + 184069350 AAAATCACCAGCTCTGCAAATCCCAACCCAAACAGGAAA--CTCTGCCCCAAAGCAGCGCAGA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189182874 61 + 189454096 AAAATCACCAGCTCTGCAAATCCCAACCCAAACAGGAAA--CTCTGCCCCAAAGCAGCGCAGA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178601676 61 + 178775436 AAAATCACCAGCTCTGCAAATCCCAACCCAAACAGGAAA--CTCTGCCCCAAAGCAGCGCAGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135536607 61 + 135778131 AAAATCACCAGCTCTGCAAATCCCAACCCACACAGGCAA--CTCTGCCCCAAAGCAGCGCAGA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190640930 63 - 190850796 AAAATCACCAGCTCTGCAAATCACAACCCAAACAGGAAACTCTCTGCTCCAAAGTCGCACAAT
i calJac3.chr3             C 0 I 304
s canFam3.chr16             18089146 63 -  59632846 AAAATCACCCACTCTAGAAGTGCCACCCCAAGCAGGAAACTCCATGACCGAAAGTAATACAAT
i canFam3.chr16            I 203 C 0
e mm10.chr8                 87794472 1442 - 129401213 I

a score=114275.000000
s hg38.chr4_KI270925v1_alt    414868 41 +    555799 CATAA--CTCTCGATACATACGT-CGATTTATCTCCACATTATT
s panTro4.chr4             193126109 41 + 193495092 CATAA--CTCTCGATACATACTT-CCATTTATCTCCACattatt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198199597 42 + 198332218 CATAA--CTCTTGATACATACTTGCAATTTATCTCCACattatt
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113872856 42 + 115148730 CATAA--CTCTTGATACATACTTGCAACTTATCTCCACATTATT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183789543 42 + 184069350 CATAA--CTCCTGATACATACGCGCAACCTATCTCCACATTATT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189182935 42 + 189454096 CGTAA--CTCCTGATACATACGCGCAACCTATCTCCACATTATT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178601737 42 + 178775436 CGTAA--CTCCTGATACATACGCGCAACCTATCTccacattatt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135536668 42 + 135778131 CGTAA--CTCCTGATACGTACTCGCAATCTGTCTCCACACTATT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190641297 42 - 190850796 CATAA--TTCTTTATACATAGCTGCAAGTTATCTCCACATTGTT
i calJac3.chr3             I 304 C 0
s canFam3.chr16             18089209 44 -  59632846 CATGATTTTTTTTATGCATGATTACAACTTCTCTTCATGTTATT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87794472 1442 - 129401213 I

a score=61751.000000
s hg38.chr4_KI270925v1_alt    414909 18 +    555799 ATTATTATTTAATTTTTT-
s panTro4.chr4             193126150 18 + 193495092 attattatttaatttttt-
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198199639 14 + 198332218 attattat----tttttt-
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113872898 18 + 115148730 ATTATTATTTAATTTTTT-
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183789585 18 + 184069350 ATCATTATTTAATTTTTT-
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189182977 18 + 189454096 ATCATTATTTAATTTTTT-
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178601779 18 + 178775436 atcattatttaatttttt-
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135536710 18 + 135778131 ATCATTATTTAATTTTTT-
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190641339 18 - 190850796 ATTACTATTTAACTTTTT-
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87795914 18 - 129401213 attattattcagtttttt-
i mm10.chr8                I 1442 C 0
s canFam3.chr16             18089253 16 -  59632846 ---ATTATTTAAATTGTTT
i canFam3.chr16            C 0 I 1053

a score=781844.000000
s hg38.chr4_KI270925v1_alt    414927 228 +    555799 GTAATA----CAGCCTTGTTTTGACTTACAACTCCCAGAGACATCCTTTCAAGGTAATATAATTCTAGCTTTATTGCAGTTCAGATGAACATTCTTTTTTAAAGCTAAAATAATGTAAGTTGTATCAAGTAC----TAACACCATTCTTAGGGCTGACATG---AATAATCAGATTTTCA-TTTTGTCCTACAATTTCATACATCCCTAGTCCATGCAAACACTTTAAAGCAACCATTTT
s panTro4.chr4             193126168 228 + 193495092 gtaata----aaGCCTTGTTTTGACTTACAACTCCCAGAGACATCCTTTCAAGGTAATATAATTCTAGCTTTATTGCAGTTCAGATGAACATTCTTTTTTAAAGCTAAAATAATGTAAGTTGTATCAAGTAC----TAACACCATTCTTAGGGCTGACATG---AATAATCAGATTTTCA-TTTTGTCCTACAATTTCATACATCCCTAGTCCATGCAAACACTTTAAAGCAACCATTTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198199653 231 + 198332218 gtaata----aaGCCTTGTTTTGACTTACAACTCCCAGAGACATCCTTTCAAGTTAATATAATTCTAGCTTTATTGCAGTTCAGATTAACATACTTTTTTAAAGCTAAAATAATGTAAGTTGTATCAAGTAC----TAACACCACTCTTAGGGCTGACATGAATAATAATCAGATTTTCA-TTTTGTCCTGCAACTTCATACATCCCTAGTCCATGCAAACACTTTAAAACAACCATTTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113872916 228 + 115148730 GTAATA----AAGCCTTATTTTGACTTACAACTCCCAGAGGCATCCTTTCAAGTTAATATAATTCTAGCTTTATTGCAGTTCAGATGAACATACTTTTTTAAAGCTAAAATAATATAAGTTGTATCAAGTAC----TAACAGAATTCTTAGGGCTGACATG---AATAATAAGATTTTCA-TTTTGTCCTACAATTGCATACATCCCTAGTCCATGCAAACACTTTAAAACAACCATTTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183789603 227 + 184069350 GTAATA----AAGCCTTGTTTTGACTTACAGCTCCCAGATGCATCCTTTCAAGTTAATATAATTCTAGCTTTATTGCAGTTCAGATGAACATACTTTTTTAAAGCTAAAATAATATAAGTTGCATCACGTAC----TAACCCCATTCTTAGGGCTGACATG---AGTACTCAGGTTTCTG-TTTTGTGCTACAACTTCATACATCCCTAGTCCATGCAAACACTTCAAA-CCACCATTTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189182995 227 + 189454096 GTAATA----AAGCCTTGTTTTGACTTACAGCTCCCAGATGCATCCTTTCAAGTTAATATAATTCTAGCTTTATTGCAGTTCAGATGAACATACTTTTTTAAAGCTAAAATAATATAAGTTGCATCACGTAC----TAACCCCATTCTTAGGGCTGACATG---AGTACTCAGGTTTCTG-TTTTGTGCTACAACTTCATACATCCCTAGTCCATGCAAACACTTCAAA-CCACCATTTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178601797 227 + 178775436 gtaata----aaGCCTTGTTTTGACTTACAGCTCCCAGAGGCATCCTTTCAAGTTAATATAATTCTAGCTTTATTGCAGTTCAGATGAACAtacttttttaaagctaaaataataTAAGTTGCATCACGTAC----TAACCCCATTCTTAGGGCTGACATG---AGTACTCAGGTTTCCG-TTTTGTGCTACAACTTCATACATCCCTAGTCCATGCAAACACTTCAAA-CCACCATTTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135536728 227 + 135778131 GTAATA----AAGCCTTGTTTCGACTTATAGCTCCCAGAGGCATCCTTTGAAGTTAATATAATTCTACCTTTATTGCAGTTCAGATGAACATACTTTTTTAAAGCTAAAATAATATAAGTTGCATCACGTAC----TAACCCCATTCTTAGGGCTGACATG---AGTACTCAGGTTTCCG-TTTTGTGCTACAACTTCATACATCCCTAGTCCCTGCAAACACTTCAAA-CCACCATTTT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190641357 221 - 190850796 ATAATA----AAGCCTTGTTTTGTCTTACAACTCCCAGAGTTATCCTTTCAGGTTAATATAATTCTGGCTTTATTGCAGTTCAG---AACATGCCTTTTTAAAGCTAAAATAAAATCAGTTGTTTTAAGTGC----TGACACCGTTCTTAGGGCTGACAAG---AATAATCAGGTTTTTATTTTTGTCTTTCAACTTCATACATCCCTAGTCCATGCAAACACTT-----CAACCATTTA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87795932 206 - 129401213 ataatattattaGTCTTGTTATGACTTGAAATTCTCAGAGATAT-CTTTCTAGTGAATATAGTTCTGGGTTCATTATATCCTATATAAACAAACTATTCAAAACCCAAACTAA----AGTTGTATCAAA-------TAGCATTATTCTTGACGTTGATATG---AATAATCAAATTTTGA-TTTCACCCTACA-----------TCTTAATCTGTGCAAGTACATTAAAGCAA-------
i mm10.chr8                C 0 C 0
s canFam3.chr16             18090322 227 -  59632846 GCAATG----CAGCCTTATTTTGATTTACAACTCTCAGAAGTATTCTTTCAAGTTAA-AAAATTCTACCTTTATTTTGGCTCAA---AATATTTTTTTTTAACTTAAGGATAAAATAAGTAGCATTAAGTACCACATAACTCCATTCTTGGGGCTGACATG---AATAACCA-ATTTTCA-TTTTATCATCCAACTTCAGAAATCACCTGGCCACATGAACACTTTAAAACAACAATGTT
i canFam3.chr16            I 1053 I 262

a score=1930474.000000
s hg38.chr4_KI270925v1_alt    415155 608 +    555799  
s panTro4.chr4             193126396 619 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198199884 619 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113873144 616 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183789830 622 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189183222 622 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178602024 622 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135536955 620 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190641578 602 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87796138 488 - 129401213  
i mm10.chr8                C 0 C 0
s canFam3.chr16             18090811 617 -  59632846  
i canFam3.chr16            I 262 I 253

a score=944513.000000
s hg38.chr4_KI270925v1_alt    415763 278 +    555799 TTTTACAAAAAGA----ATTACTACATTTA---TCCTCGAGACACCAA-ACAAGAGCCTAACTAACATTTTCATTGAATTG-GCGATTGGCTTGAGTTGTTTC----------------------------------CAAATTGAC-TTTATTTGTCCTTTGGAATCACATAGACACAACCTTAATCTAAAAGTCATTAGCAACT-AAATTTAAGATTATTGACTTAGCTGCATAGAAAACCAAAAACTTGACATCCTGATGGAAAAGTTGCATTCAATTTTATaaga---agagctaatatttaaggagaacttagtatatgcca
s panTro4.chr4             193127015 279 + 193495092 TTTTACAAAAAGA----ATTACTACATTTG--TTCCTCGAGACACCAA-ACATGAGCCTAACTAACATTTTCATTGAATTG-GCGATTGGCTTGAGTTGTTTC----------------------------------CAAATTGAC-TTTATTTGTCCTTTGGAATCACATAGATACAACCTTAATCTAAAAGTCATTAGCAACT-AAGTTTAAGATTATTGACTTAGCTGCATAGAAAACCAAAAACTTGACATCCTGATGGAAAAGTTGCATTCAATTTTATaaga---agagctaatatttaaggagaacttagtatatgcca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198200503 279 + 198332218 TTTTACAAAAAGA----ATTGTTACTTTTG--TTCCTCAAGACAGCAA-ACATGAGCCTAACTAACATTTTCATTGAATTG-GTGATTGGCTTGACTTGTTTC----------------------------------CAAATTGAC-CTTATCTGTCCTTTGGAATCACATAGACACAACCTTAATCTAAAAGTCATTAGCAACT-AAATTTAAGATTATTGACTTAGCTGCATAGAAAACCAAAAACTTGGCATCCTGATGGAAAAGCTGCATTCAATTTTATaaga---agagctaacatttaaggagcacttaatatatgcca
i ponAbe2.chr4             C 0 I 1
s nomLeu3.chr7b            113873760 279 + 115148730 TTTTACAAAAAGA----ATTGTTACTTTTG--TTCCTCGAGACACCAA-ACATGAGCCTAAGTAACATTTTCGTTGAATTG-GCAACTGGCTTGACTTGTTTC----------------------------------CAAACTGAT-TTTATTTGTCCTTTGGAATCACATAGACACAACCTTAATCTAAAAGTCATTAGCAACT-AAATATAAGATTATTGACTTAGCTGCATAGAAAGCCAAAAACTTGACATCCTGATGGAAAAGCTGCATTCAATTTTATaaga---agagctaacattcaaggagcgctttgtatatgctg
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183790452 279 + 184069350 GTTTACAAAAAGA----GTTGTTACTTTTG--TTCCTCAAGACACCAA-ACATGAGCCTAACTAACATTTTCATTGAATTG-GTGATTGGCTTGACTTGTTTC----------------------------------CAAATTGAC-TTTACTTGTCCTTTGGAATCACATAGACACAACCTTAATCTAAAAGTCAGTAGCAGCT-AAATATAAGAGTATTGACTAAGCTGCACAGAAAACCAAAAACTTGACATCCTGATGGAAAAGCTGCAATCAATTTTATaaga---agagctaacatttaaggagcacttagtatatacca
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189183844 279 + 189454096 GTTTACAAAAAGA----GTTGTTACTTTTG--TTCCTCAAGACACCAA-ACATGAGCCTAACTAACATTTTCATTGAATTG-GTGATTGGCTTGACTTGTTTC----------------------------------CAAATTGAC-TTTACTTGTCCTTTGGAATCACATAGACACAACCTTAATCTAAAAGTCAGTAGCAGCT-AAATATAAGAGTATTGACTAAGCTGCACAGAAAACCAAAAACTTGACATCCTGATGGAAAAGCTGCAATCAATTTTATaaga---agagctaacatttaaggagcacttagtatatacca
i macFas5.chr5             C 0 I 316
s papAnu2.chr5             178602646 279 + 178775436 gtttacaAAAAGA----GTTGTTACTTTTG--TTCCTCGAGACACCAA-ACATGAGCCTAACTAACATTTTCATTGAATTG-GTGATTGGCTTGACTTGTTTC----------------------------------CAAATTGAC-TTTACTTGTCCTTTGGAATCACATAGACACAACCTTAATCTAAAAGTCATTAGCAGCT-AAATATAAGAGTATTGACTAAGctgcacagaaaaccaaaaacttgaCATCCTGATGGAAAAGCTGCAATCAATTTTATAAGA---AGAGCTAACATTTAAGGAGCACTTACTATATACCA
i papAnu2.chr5             C 0 I 320
s chlSab2.chr7             135537575 279 + 135778131 GTTTACAAAAAGA----GTTGTTACTTTTG--TTCCTCAAGACACCAA-ACATGAGCCTAACTAACATTTTCATTGAATTG-GTGATTGGCTTGACTTGTTTC----------------------------------CAAATTGAC-TTCACTTGTCCTTTGGAATCACATAGACACAACCTTAATCTAAAAGTCATTAGCAGCT-AAATATAAGAGTATTGACTAAGCTGCACAGAAAACCAAAAACTTGACATCCTGATGAAAAAGCTGCAATCAATTTTATaaga---agagctaacatttaaggagtacttagtatatacca
i chlSab2.chr7             C 0 I 319
s calJac3.chr3             190642180 281 - 190850796 TGTTACAAAAAGA----ATTGTGATTTTCCCCCCCCTCTGGACATCAA-ACATGAGTTTAACTAATATTTTCATTGAATTG-ATGATTGGCTTGACTTATTCC----------------------------------CGAATTGAC-TTCATTTGTCCTTTGGCATCATACAGCTATAACCTTCATCTAAAAGTCGTTAGAAATGAAAACATAAGATTATTGATTTAGCTGCACAGAAAACCAAAAACTTGACATCCTGCTGGAAAAGCTGCATGCAATTTTATAAGA---AGAGCT-Ccatttaaggagcatgtaggatatgctg
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87796626 276 - 129401213 CCGTGCAAA---T----GTTGCTGCTTCTA--TCCTTCAGGACACCACTGGGTGGCCATGACTAATACTTGAACTGAATTGTGTCACTGGCTCTACTCCATCCCCCTACCCTCAACCCCTACTCACCCCAGACCCTACCAATTGGC-TTTCTTTGCCTTCTGACATCATG---------------------------TAGCAACT-AAACATAAGATCATTGAGTTAATTGCAAAGGAAATCA----------GTCTTCATATAAATGCATCACACACTTCCACAAGAGAGATAACTAACATTTAATAAGTATGCAGTAAATGT--
i mm10.chr8                C 0 C 0
s canFam3.chr16             18091681 272 -  59632846 tttcagaaaaaaaaGGTATTGCTGCTTTTG--TTCCTCAGAACAGGAA-ATAAGGA---GTCTAATATTTTCATGGAATTG-GCAATTGGTTTGACTCGCTTC----------------------------------CGAACTGGCATTTTTTTGTCCTTTGGTATCATGTAGAAACAAC-----TTTAAAAGTCACTCACAACT-AAATATAAGATTATTGATGTAGCTGCATAGAAAACCCAAAAATTGATATCCTGATGAAAAAGATTCATACATTTTTATAAGA---AGAGGTAAC----AGAgagcatttagtatgtgcca
i canFam3.chr16            I 253 C 0

a score=4190.000000
s hg38.chr4_KI270925v1_alt    416041 1 +    555799 g
s panTro4.chr4             193127294 1 + 193495092 g
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198200783 1 + 198332218 g
i ponAbe2.chr4             I 1 C 0
s nomLeu3.chr7b            113874039 1 + 115148730 g
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183790731 1 + 184069350 g
i rheMac3.chr5             C 0 I 325
s macFas5.chr5             189184439 1 + 189454096 g
i macFas5.chr5             I 316 C 0
s papAnu2.chr5             178603245 1 + 178775436 G
i papAnu2.chr5             I 320 C 0
s chlSab2.chr7             135538173 1 + 135778131 g
i chlSab2.chr7             I 319 C 0
s calJac3.chr3             190642461 1 - 190850796 g
i calJac3.chr3             C 0 I 1
s mm10.chr8                 87796902 1 - 129401213 G
i mm10.chr8                C 0 C 0
s canFam3.chr16             18091953 1 -  59632846 a
i canFam3.chr16            C 0 I 1

a score=12588.000000
s hg38.chr4_KI270925v1_alt    416042 5 +    555799 tggta
s panTro4.chr4             193127295 5 + 193495092 tggta
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198200784 5 + 198332218 tgata
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113874040 5 + 115148730 tggta
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189184440 5 + 189454096 ttgtt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178603246 5 + 178775436 TGGTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135538174 5 + 135778131 tggtt
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190642463 5 - 190850796 tggta
i calJac3.chr3             I 1 C 0
s mm10.chr8                 87796903 5 - 129401213 TGGCA
i mm10.chr8                C 0 C 0
s canFam3.chr16             18091955 5 -  59632846 tggta
i canFam3.chr16            I 1 C 0
e rheMac3.chr5             183790732 325 + 184069350 I

a score=181088.000000
s hg38.chr4_KI270925v1_alt    416047 52 +    555799 ttccaagcaccatacccgtattaacttaattcctgtaacaaccctaggaaga
s panTro4.chr4             193127300 52 + 193495092 ttccaagcaccatacccgtattaacttaattcctgtaacaaccctaggaaga
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198200789 52 + 198332218 ttctaagcaccatacccatattaacttaattcctgtaacaaccctaggaaga
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113874045 52 + 115148730 ttctaagcgccatacccgtatgaacttaattcctgtaacaactctaggaaga
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183791057 52 + 184069350 ttctaagcaccataccggtattaacttaattcctgtaatgaccctaagaaga
i rheMac3.chr5             I 325 C 0
s macFas5.chr5             189184445 52 + 189454096 ttctaagcaccataccggtattaacttaattcctgtaatgaccctaagaaga
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178603251 52 + 178775436 TTCTAAGCACCATACCGGTATTAACTTAATTCCTGTAATGACCCTAAGAAGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135538179 52 + 135778131 ttctaagcagcataccggtattaacttaattcctgtaatgaccctaagaaga
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190642468 52 - 190850796 ttctaagcaccatacctgtattaacttaattcctgtaacaaccctaagaaga
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87796908 38 - 129401213 ---------GTGTGCCATTATTAATT--ACTCAAGTAATG---CTAAGAAGA
i mm10.chr8                C 0 I 444
s canFam3.chr16             18091960 49 -  59632846 ---ttagcactttgcatgtattaatttaatccctgtaacaaccaaaggaaaa
i canFam3.chr16            C 0 C 0

a score=103061.000000
s hg38.chr4_KI270925v1_alt    416099 31 +    555799 aggctacattattattctaatcttaaagagg
s panTro4.chr4             193127352 31 + 193495092 aggctacattattattctaatcttaaagagg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198200841 31 + 198332218 aggctatattattattctaatcttaaagagg
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113874097 31 + 115148730 aggcgatattattatcctaatctcaaagagg
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183791109 31 + 184069350 aggctatattattatcctaattttaaaaagg
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189184497 31 + 189454096 aggctatattattatcctaattttaaaaagg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178603303 31 + 178775436 AGGCTAtattattatcctaattttaaaaagg
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135538231 31 + 135778131 aggctatattattatcctaattttaaaaagg
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190642520 31 - 190850796 agactacattattattctaattttaaagagg
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18092009 29 -  59632846 --tgcatatcattatcctcattttaaagaga
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87796946 444 - 129401213 I

a score=1233122.000000
s hg38.chr4_KI270925v1_alt    416130 384 +    555799 aataaactgagataccgagccattgaataacAGTGAATAAGTAAAGAAGCAAAGGATTGATCAGAGGTAATCTCA-CCTGGA-----TC-----CTCTTACCCACTGAGCTAGGACTGCATTCTCACCCCACAAATGGTG------ATGTGG--------TCAgggctacatagtggagtgatctagaccacaggc-ctggtgtca----------------------------------------------------------------------------------aacacactcaggttttcatgctcagcctgccacttactagctgagtatacttaggcaaagcacttt-attaaatatatcattttgcctcagttttcttaatctagtccctaacttgcatgattgtcataaggcttaaattagagaatgtttacaagttggttagctagtgtcataacatactaaggctcctttaaatggtacc-tA
s panTro4.chr4             193127383 448 + 193495092 aataaactgagatactgagccattgaataacagtgagtaagtaaagaagcaaaggattgatcagaggtaatctca-cctgga-----tc-----ctcttacccactgagctaGGATTGCACTCTTACCCCATAAATGGTG------ATGTGG--------TCAGGGCTACATAGTGGAGTGATCCAGACCACGGGC-CTGGTGTCACAGAGACTCAGGTTTGCAGTCAgggctacatagtggagtgatctagacca------------------cgggcctggtgtcccacacactcaggttttcatgctcagcctgccacttactagctgagtatacttaggcaaagtacttt-attaagtatatcattttgcctcagttttcttaatctagtccttaacttgcatgattgtcataaggcttaaattagagaatgtttacaagttggttagctagtgtcataacatactaaggctcctttaaatggtacc-tA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198200872 440 + 198332218 aataaactgagataccgagccattgaataac--------AGTAAAGAAGCAAAGGATTGATCAGAGGTAATCTCA-CCTGGA-----TC-----CTCTTACCCACTGAGCTAGGACTGCATTCTCACCCCACAAATGGTG------ATGTGG--------TCAGGGCTACATAGTAGAGTGATCTAGACCACAGGC-CTGGTGTCACACACACTCAGGTTTATGGTCagggatacat------------------agtggagtgatctagaccacgggcttggtgtcacacatactcaggttttcatgttcagtcggccacttactagctgagtatacttaggcaaagtacttt-attaagtatatctctttgcctcagttttcttaatctagtccctaacttgcatgattgtcataagcctgaaattagacaatgtttccaagttggttagctagtgccataacatactaaggctcctttaaatggtaCT-TA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113874128 384 + 115148730 aataaactgagataccaagccactgaataacagtgagtaagtaaagaagcaaaggattgatcagaggtaatccca-cctgga-----tc-----ctcttacccactgagctaGGACTGCATTCTCACCCCACAAACGGTG------GTGTGG--------TCAgggctacatggtgtagcgatccagaccacgggc-ctggtgtca----------------------------------------------------------------------------------cagaaactcagattttcatgctcagtctaccacttactaactgagtacacttaggcaaagtacttt-attcagtatatctctttgcctcagttttcttaatctagtccctaacttacatgattgtcataaggcttaaattagagaatgtttacaagttcattagctagtgtcataacatgataagcctcctttaaatggtaCT-TA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183791140 384 + 184069350 aataaactgagataccgagccattgaataacagtgagtaagtaaagaagcaaaggattgatcagaggtaatctcagcctgga-----tc-----ctcttacccactgagctaGGACTGCATTCTCA-CCCGCAGATGGTG------GTGTGG--------GCAgggctacatagtggagtgatccagaccctgggc-ctggtgtta----------------------------------------------------------------------------------cgcacactcaggttttcatgcttagtttgccacttactagctgagtatacttaggcaaagtacttt-attaagtaaatctctttgcctcagttttcttagtctagtccctaacttacatgattgtcatgagacttaaattagagaatgtttgcaagttggttagctagtgtcttaacacaataaggctcctgtaaatggtaCT-TA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189184528 384 + 189454096 aataaactgagataccgagccattgaataacAGTGAGTAAGTAAAGAAGCAAAGGATTGATCAGAGGTAATCTCAGCCTGGA-----TC-----CTCTTACCCACTGAGCTAGGACTGCATTCTCA-CCCGCAGATGGTG------GTGTGG--------GCAgggctacatagtggagtgatccagaccctgggc-ctggtgtta----------------------------------------------------------------------------------cgcacactcaggttttcatgctcagtttgccacttactagctgagtatacttaggcaaagtacttt-attaagtaaatctctttgcctcagttttcttagtctagtccctaacttacatgattgtcatgagacttaaattagagaatgtttgcaagttggttagctagtgtcttaacacaataaggctcctgtaaatggtaCT-TA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178603334 384 + 178775436 aataaactgagATACCGAGCCATTGAATAACAGTGAGTAAGTAAAGAAGCAAAGGATTGATCAGAGGTAATCTCAGCCTGGA-----TC-----CTCTTACCCACTGAGCTAGGACTGCATTCTCA-CCCGCAGATGGTG------GTGTGG--------TCAGGGCTACATAGTGGAGCGATCCAGACCCTGGGC-CTGGTGTTA----------------------------------------------------------------------------------CGCACACTCAGGTTTTCATGCTCagtttgccacttactagctgagtATACTTAGGCAAAGTACTTT-ATTAAGTAaatctctttgcctcagttttcttagtCTAGTCCCTAACTTACATGATTGTCATGAGACTTAAATTAGAGAATGTTTGCAAGTTGGTTAGCTAGTGTCTTAACACAATAAGGCTCCTGTAAATGGTACT-TA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135538262 383 + 135778131 aataaac-gagatactgagccattgaataacAGTGAGTAAGGAAAGAAGCAAAGGATTGATCAGAGGTAATCTCAGCCTGGA-----TC-----CTCTTACCCACTGAGCTAGGACTGCATTCTCA-CCCGCAGATGGTG------GTGTGG--------TCAgggctacatagtggagtgatccagaccctgggc-ctggtgtta----------------------------------------------------------------------------------cgcacactcaggttttcatgctcagtttgccacttactagctgagtatacttaggcaaagtacttt-attaagtaaatctctttgcctcagttttcttagtctagtccgtaacttacatgattgtcatgagacttaaattagagaatgtttgcaagttggttagctagtgtcttaacataataaggctcctgtaaatggtaCT-TA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190642551 371 - 190850796 gataaactgcgatactgagCCAGTGAATAAGAGCTTGTAAGTAAAGAAGCAAAGGGTTGGTCAGAGATAATCTCAGTCTGGA-----TC-----CTCTTACCCACTGAGCTGGGACTGCATTCTCA-CCTGCAAATGGTG------GTGTGT--------TCAGGGCTATCAAGAGTAGTGCTCCAGACCAT-GGC-TTGGCTTCA------------------------------------------------------------------------------------CACACTCA-ATTCTCATGCTCAGtctgccacttactagctgagtatacataggcaaagt-cttt-attaggtaaatctctttgcctcggttttctcaatcttgtccctaacttacatgattgtcataagttttaaattagagaatgtaaatgagttggttagccagtgT--------AATAAGGCTCCTGTAACTGGTACT-TA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87797390 347 - 129401213 AAGAAGTTGAGACATGGAAAAGGGAAGTAACCTCTCATAATTACAGAAACAAAGAACTGATCAGAAGAAATTTTGCTCTGAAATTGCCT-----CTCTTGACCACTGAGCT----------------ACCATAAAAAATGATACAAATGTTG--------TCA-GGCTAGATAATGGAATGACACAGAC--------------TTG---------------------------------------------------------------------------------------------GTCTTCATCCCCAGCCTACCACTAACTATCT---CATATCCAAAACAAATGTTCTGATTAGGCAAATCACTTTGCCTTGATTTCCTTGATCTAATATCTAACTAATATGATTGT-GTAAGAACTA------ATAATGGGTACAAAGTGCTCGGTGAGTGTGAGTGGGTCTTAAAGTGCCTATACATGGCACTATA
i mm10.chr8                I 444 C 0
s canFam3.chr16             18092038 395 -  59632846 aagaaactgaaacacagagcaattcaataatgcctcattagtaaagctgcaaataattgatctgaggcagtcttggtctgag-----ccctgcactcttaaccactgagctGGAACTGTACCACCACCTCGCAAACAGTG------TTCTGGCTTATTAATCTTGTCAGACtaatatagtgatcaggactatgagctttggtgtca--------------------------------------------------------------------------------------gactcaagtgttaatgcccagtctgccccttactagctgagcatccttagacaaattacttt-attaagtaaataactttgcctcattttccttaatttaatacctaatttatgtgactgtcataagggttaaattagataatgtttgcaaagtgttcacccagcataaccacatattaaggatcctgtaaatggttct-ta
i canFam3.chr16            C 0 I 213

a score=4626485.000000
s hg38.chr4_KI270925v1_alt    416514 1379 +    555799  
s panTro4.chr4             193127831 1380 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198201312 1375 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113874512 1363 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183791524 1369 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189184912 1369 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178603718 1364 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135538645 1369 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190642922 1350 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87797737 1408 - 129401213  
i mm10.chr8                C 0 C 0
s canFam3.chr16             18092646 1353 -  59632846  
i canFam3.chr16            I 213 I 3360

a score=941712.000000
s hg38.chr4_KI270925v1_alt    417893 439 +    555799  
s panTro4.chr4             193129211 511 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198202687 515 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113875875 363 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183792893 365 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189186281 365 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178605082 365 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135540014 365 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190644272 361 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87799145 349 - 129401213  
i mm10.chr8                C 0 I 3645
e canFam3.chr16             18093999 3360 -  59632846 I

a score=980110.000000
s hg38.chr4_KI270925v1_alt    418332 343 +    555799 ttacatttcccattttggtattcaataaagtaaatatagatagacatgacccatgtgaataaaagctgttaagtgtcctcaataatttgaactgtgtaaaggggtcctaagaatgaaaagtttgtgaatcactgCT-CAATACA------TGTCATCTGGAAGCAGCTAGTGTAGGATCCAGCCTAAATCTCCACGGCGTGAGGAAAGCCATGGCCATCCGGGCCTCCTTTAGCAGTGATCAATGTCATCCATTACGTAAAACCTATTGAGGGTTTGCTATGTGCCAGAAAGGCGAGGTTTGCTGTGTATGCAggagccaggtcatgggaagatttgcaaacttcactag
s panTro4.chr4             193129722 343 + 193495092 ttatatttcccattttggtatttaataaagtaaatacagatagacatgacccatgcgaataaaagctgttaagggtcctcaataatttgaactgtgtaaagggatcctaggaatgaaaagtttgtgaatcactgCT-CAATACC------TGTCATCTGGAAGCAGCCAGTGTAGGATCCAGCCTAAATCTCCATGGCGTGAGGAAAGCCATGGCCATCTGGACCTCCTTCAGCAGTGATCAATGTCATTCATTACGTAAAACCTATTGAGGGTTTGCTATGTGCCAGAAAGGCGAGGTTTGCTGTGTAGGCAggagccaggtcatgggaagatttgcaaacttcaccag
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198203202 341 + 198332218 ttacattttccattttggtatttaataaagtgaatatagatagatatgacccatgagaataaaagctctt-agggtcctcaataatttgaactgtgtaaaggggtcctaagaatgaaaa-tttgtgaatcactgCT-CAATACA------TGTCATCTGGAAGCAGCTAGTGTAGGGTCCAGCCTAAATCTCCACGGCATGAGGAAAGCCATGGCCATCCGGACCTCCTTTAGCAGTGATCAATGTCATCCATTATGTAAAACGTATTGAGGGTTTGCTATGTGCCAGAAAGGTGAGGTTTGCTGTGTAGGCAggagccaggtcataggaagatttgcaaacttcactag
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113876238 343 + 115148730 ttacatttcccattttggtatttaataaagtgaatatagatagatatgatccatgcgaataaaagctcttaagggtcctcaataatttgaactgtgtaaaggggtcctaagaatgaaaagtttgtgaatcgctgCT-CAATACA------GGTCATCTGGAAGCAGCTAGTGTGGGGTCCAGCCTAAATCTCCACGGCGTGAGGAAAGCCATGGCCATCCGGACCTCCTTTAGCTGTGATCAATGTCATCCATTACGTAAAACGTATTGAGGGTTTGCTATGTGCCAGAAAGGCGAGGTTTGCTGTGTAGGCAggagccaggtcataggaagatttgcaaacttcactag
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183793258 348 + 184069350 ttacacttcccattttgatgtttaataaagtaaatgtagatagatatgacccatgtgaacaaaagctcttaagcgtccttaataatttgagctgtgtaaaggggtcctaagaatgaaaaatttgtgaatcactgCT-CAATACATGTCCCTGTCATCTGGAAGCAGCTAGTGTGGGGTCCGGCCTAAATCTCCACGGCGCGAGGAAAGCCACGGCCATCCGGACCTCCTTT-GCAGTGATCAGTGCCATCCATTACCTAAAACGTATTGAGGGTTTGCTATGTGCCAGAAGGGCGAGGTTTGCTGTGTAGGCAggagccaggtcacaggaagattttcaaacttcactag
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189186646 348 + 189454096 ttacacttcccattttgatgtttaataaagtaaatgtagatagatatgacccatgtgaacaaaagctcttaagcgtccttaataatttgagctgtgtaaaggggtcctaagaatgaaaaatttgtgaatcactgCT-CAATACATGTCCCTGTCATCTGGAAGCAGCTAGTGTGGGGTCCGGCCTAAATCTCCACGGCGCGAGGAAAGCCACGGCCATCCGGACCTCCTTT-GCAGTGATCAGTGCCATCCATTACCTAAAACGTATTGAGGGTTTGCTATGTGCCAGAAGGGCGAGGTTTGCTGTGTAGGCAGGAGCCAGGTCACAGGAAGATTTTCAAACTTCACTAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178605447 349 + 178775436 ttACACTTCCCATTTTGATGTTTAATAAAGTAAATGTAGATAGATATGACCCATGTGAACAAAAGCTCTTAAGCGTCCTTAATAATTTGAGCTGTGTAAAGGGGTCCTAAGAATGAAAAATTTGTGAATCACTGCT-CAATACATGTCCCTGTCATCTGGAAGCAGCTAGTGTGGGGTCCGGCCTAAATCTCCACGGCGCGAGGAAAGCCACAGCCATCCGGACCTCCTTTAGCAGTGATCAGTGCCATCCATTACCTAAAACGTATTGAGGGTTTGCTATGTGCCAGAAGGGCGAGGTTTGCTGTGTAGGCAGGAGCCAGGTCACAGGAAGATTTTCAAACTTCACTAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135540379 349 + 135778131 ttacatttcccattttgatatttaataaagtaaatgtagatagatatgacccatgtgaacaaaagctcttaagcgtcctcaataatttgagccgtgtaaaggggtcctaagaatgaaaaatttgtgaatcactgCT-CAATACATGTCCCTGTCATCTGGAAGCAGCTAGTGTGGGGTCCGGCCTAAATCTCCACGGCGCGAGGAAAGCCACGGCCATCCGGACCTCCTTTAGCAGTGATCAGTGCCATCCATTACCTAAAACGTATTGAGGGTTTGCTATGTGCCAGAAGGGCGAGGTTTGCTGTGTAGGCAGGAGCCAGGTCACAGGAAGATTTTCAAACTTCACTAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190644633 334 - 190850796 ttaaatttcacattttgatatttaataaattaaatatggatagatatgacccatacaaataaaagctcttaaggatcctcaataattttaacttcgtaaagaggacctaagaatgaaaggtttgtgaatcactgCTCCAATACACGTCCCTGTCATCTGAAAGCAACTGGAGT-GGGTACAGCCTACATCTCAAGGGCGTGAGGAAACCCTTGGCCGTTCAGACCTCCTTT-ACGGTGATCAATG--------------AAACGCATTGAGAGTTTGCTATGTGCCAGAAAGGTGAGGTTTCCTGTGTACGCAGGAGCCGGGTCATAGAAAGCTTTGCAAACTTTACTAG
i calJac3.chr3             C 0 I 529
e mm10.chr8                 87799494 3645 - 129401213 I
e canFam3.chr16             18093999 3360 -  59632846 I

a score=551725.000000
s hg38.chr4_KI270925v1_alt    418675 201 +    555799 ggcttcagcttcacttagaaa---gaaaaaaaagtgactgaagtattttaacgaagagaatgatgtgtctcgatttatattttaggaaggtgattacgaggctgtgtctttgatggaatgaagccaataaggctgcagccaagaagatcagttggagcttttagctgaaatccaggtgagaagagatTAAGGCCTCCTAAATTA
s panTro4.chr4             193130065 201 + 193495092 ggtttcagcttcacttagaaa---gaaaaaaaagtgactgaagtattttaacgaagagaatgatgtgtctcgatttatattttaggaaggtgattatgaggctgtgtctttgatggaatgaagccaataaggctgcagccaagaagatcagttggagcttttagctgaaatccaggtgagaagagatTAAGGCCTCCTAAATTA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198203543 196 + 198332218 ggtttcagcttcacttagaaa---gaaaaaaaagtgactgaagtattttaacgaagagaatgatgtgtctggatttatatttca-gaaggtgattatgaggctgtgtctttgatggaaagaagccaataaggctgcagccaag-agatcagttggagcttttagctg-aatccaggtgag-agaGATT-AGTCCTCCTAAATTA
i ponAbe2.chr4             C 0 I 325
s nomLeu3.chr7b            113876581 201 + 115148730 ggtttcagcttcacttagaaa---gaaaaaaaagcgactgaagtattttaacgaacagaatgatgtggctcgatttatattttaggaaggtgattatgaggctgtgtctttgatagaatgaagccgataaggctgcagccaagaagaccatttggagcttttagctgaaatccaggagagaAGAGACTAAGGCCTCCTAAATTA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183793606 203 + 184069350 ggtttcagcttcacttagaaa-gaaaaaaaaaagtgactaaagtattttaacgaagagaatgatgtggctcgatttatattttaggaagattattatgaggctgtgtctttgatggaatgaagccaataagactgcagccaagaagatcatttgaagcttttagctgaaacccaggtgagaAGAGGGTAAGGCCTCCTAAATTA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189186994 203 + 189454096 GGTTTCAGCTTCACTTAGAAA-GAAAAAAAAAAGTGACTAAAGTATTTTAACGAAGAGAATGATGTGGCTCGATTTATATTTTAGGAAGATTATTATGAGGCTGTGTCTTTGATGGAATGAAGCCAATAAGACTGCAGCCAAGAAGATCATTTGAAGCTTTTAGCTGAAACCCAGGTGAGAAGAGGGTAAGGCCTCCTAAATTA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178605796 204 + 178775436 GGTTTCGGCTTcacttagaaaggaaaaaaaaaagtgactgaagTATTTTAACGAAGAGAATGATGTGGCTCGATTTATATTTTAGGAAGATTATTATGAGGCTGTGTCTTTGACGGAGTGAAGCCAATAAGACTGCAGCCAAGAAGATCATTTGAAGCTTTTAGCTGAAACCCAGGTGAGAAGAGGGTAAGGCCTCCTaaatta
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135540728 202 + 135778131 GGTTTCGGCTTCACTTAGAAAGGAAAAAAAAAAAAG--TGAAGTATTTTAACGAAGAGAACGATGTGGCTCGGTTTATATTTTAGGAAGATTATTATGAGGCTGTGTCTTTGATGGAATGAAGCCAATAAGACTACAGCCAAGAAGATCAGTTGGAGCTTTTAGCTGAAACCCAGGTGAGAAGAGGGTAAGGCCTCCTAAATTA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190645496 199 - 190850796 GGTTTCAGCtttacttatatg----gaatgaaaataactgaagtattttaacaaagagaatgatgtggttccatttat-cctcagaaaggtgactgtgaggctgtgtctacgatggaaggaagtcagcaaggctacagccaaggagatcagttggagcttttagctgaaatccagatgagaagagatTAAGGCCTCCTAAATTA
i calJac3.chr3             I 529 C 0
e mm10.chr8                 87799494 3645 - 129401213 I
e canFam3.chr16             18093999 3360 -  59632846 I

a score=374041.000000
s hg38.chr4_KI270925v1_alt    418876 185 +    555799 AGGCAGGAACAGAAGGAAAAGAAAGAAGAGCTTCCAGGAGCGATAAATGAGATAGATCTACTACACTGGGTGACTAAATGGGCACAAAAAAATGAACGGCATTTCCTTTCTCCAAAGGCAATTTTCCTCAAATTATTGACATTATCcgaaagacataaacaggtatttttcaaaggaagatatac
s panTro4.chr4             193130266 184 + 193495092 AGGCAGGAACAGAAGGAAAAGAAAGAAGAGCTTCCAGGAGTGATAAATGAGATAGATCTACAACACTTGGTGACTAAATGGGCAC-ACAAGATGAACGGCATTTCCTTTCTCCAAAGGCAATTTTCCTCAAATTATTGACATTATCcaaaagacataaacagctatttttcaaaggaagatatac
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113876782 184 + 115148730 AGGCAGGAATAGAAGGAAAAGAAAGAAGAGCTTCCAGGAGCAATAAATGAGATAGATCTACAACACTGGGTGACTAAATGGGTAC-ACAAAATGAACAGCATTTCCTTTGTCCAAAGTCTGTTTTCCTCAAATTATTGACATTATCTGaaagacataaacagatatttttcaaaggaagatatac
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183793809 181 + 184069350 AGGCAGGAACAGAAGG-AAAGGAAGAAGAGCTTCCAGGAGTGATGAATGAGACAGATCGATACCACTGGGTGACTAAATGGGCAC---AAAATGAACAGCATTTCCTTTCTCTGAAGGCTATTTCCCTCGAATTATTGGCATTATCTGaaagatataaacaggtatttttcaaaggaagatatat
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189187197 181 + 189454096 AGGCAGGAACAGAAGG-AAAGGAAGAAGAGCTTCCAGGAGTGATGAATGAGACAGATCGATACCACTGGGTGACTAAATGGGCAC---AAAATGAACAGCATTTCCTTTCTCTGAAGGCTATTTCCCTCGAATTATTGGCATTATCTGaaagatataaacaggtatttttcaaaggaagatatat
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178606000 182 + 178775436 aggcaggaacagaaggaaaaggaagaagagcttCCAGGAGCGATGAATGAGACAGATCTATACCACTGGGTGACTACATGGGCAC---AAAATGAACGGCATTTCCTTTCTCCAAAGGCTATTTTCCTCGAATTATTGGCATTATCTGAAAGATATAAACAggtatttttcaaaggaagatatat
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135540930 181 + 135778131 AGGCAGGAACAGAAGG-AAAGGAAGAAGAGTTTCCAGGAGCTATGAATGAGACAGATCGATACCACTGGGTGACTAAATGGGCAC---AAAATGAACAGCAGTTCCTTTCTCCGAAGGCTATTTCCCTCGAATTATTGGCATTATCTGaaagatataaacaggtgtttttcaaaggaagatatat
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190645695 183 - 190850796 AAGCAGGAAAAGAAGGAGAAGAAAGAATACCTTTTGGGAGCGATAAATGAGATAGGTCTGCACTACTGGGTGAATAAATAGGCAC-ACGAAACGAAT-GCATTTCCATTCTTCAAAGGCTGTTTTCCCCAAATTGCTGACATtggccaaaagacatcaagaggtattgttcaaaggatgatacat
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87799494 3645 - 129401213 I
e canFam3.chr16             18093999 3360 -  59632846 I
e ponAbe2.chr4             198203739 325 + 198332218 I

a score=138857.000000
s hg38.chr4_KI270925v1_alt    419061 51 +    555799 aaataatcaatgaacatactaaaatgtgttcagaaatcactagaataaaaa
s panTro4.chr4             193130450 51 + 193495092 aaataatcaatgaacatactaaaatgtgttcagaaatcactagaataaaaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198204064 50 + 198332218 AAATAATCAATGAACATACTAAAATGTG-TCAGAAATCACTAGCATAAAAA
i ponAbe2.chr4             I 325 C 0
s nomLeu3.chr7b            113876966 50 + 115148730 aaataatcaatgaacatactaaaacgtgttcagaaatcactagaat-aaaa
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183793990 51 + 184069350 taataatcaataaacatattaaaatgtgttcagaaatcactagaataaaaa
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189187378 51 + 189454096 taataatcaataaacatattaaaatgtgttcagaaatcactagaataaaaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178606182 48 + 178775436 taataatc---aaacatattaaaatgtgttCAGAAATCACTagaataaaaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135541111 51 + 135778131 taataatcaataaacatattaaaatgtgttcagaaatcactagaataaaaa
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190645878 51 - 190850796 aaatcatcaatgaatatactaaaatgtgttcagaaatcactagaatcaGAA
i calJac3.chr3             C 0 I 4184
e mm10.chr8                 87799494 3645 - 129401213 I
e canFam3.chr16             18093999 3360 -  59632846 I

a score=851703.000000
s hg38.chr4_KI270925v1_alt    419112 339 +    555799 aatgcaagtataagc----------aataaaataaattgtctttaaccaaatggcagttttttt--tttagcaacacctgttttcaaagataggaaaagagatatgcaaacatgtttgacagaaaa-----------------------------------------------ctgaatcagtacaaccattctgaaaagcattttagaAGAATGTTTCAGGACTCTTCTAGGAATTTATCTTAAGAGAACACAGTTCATGTCATTTACCACGTTCTAATATACTATCTAACGGGCTTCTCTATGTTTACTGTAAGTC-TCACCTACTGGAATATAAATACTGCAAGAACAAAGATGGAATCCCAAGCACATAGAAGAGTGCACAACACGCTGTAAGTG
s panTro4.chr4             193130501 339 + 193495092 aatgcaagtataagc----------aataaaataaattgtctttaaccaaatggcagttttttt-ctttagcaacacctgttttcaaggataggaaaagagatatgcaaacatgtttgacagaaaa-----------------------------------------------ctgaatcagtacaaccattctgaaaagcattttagaagaatgtttcaggactctcctagaaatTTATC-TAAGAGAACACAGttcatgtcatttaccacgttctaatatactatctaacgggcttctctatgtttactgtaagtc-tcacctactggaatacaaatactgcaagaacaaagacggaatcccaagcacatagaagagtgcacaacacactgtaagtg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198204114 325 + 198332218 AAAGC-AGTCTAG------------CATAAAATAAA-TGTCTTTAACCAAATGGCAGTTTTTTTTCTTTAGCAACACCTGTTTTCAAGGATAGGAAAACAGATATGCAAACATG-TTGACAGAAAA-----------------------------------------------CTGAATCCATACAACCATTCTGAAAAGCACTTTAGAAGAATGTTTCAGGATCCTTCTAGGAATTTATCTTAAAACAACACAGttcatgtcatttgccacgttctaatatactatctaacaggcttctctatgtttactgtaagtc-tcatctactggaatataaatattgcaagaacaaagatggaatcccaagcgcatagaagagtgcacaaca-----------
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113877016 328 + 115148730 aatgcaaatgtaagc----------aataaaataaattttctttaaccaaatggcaattttttt-ctttagcaacacctgttttcaaggataggaaaagagacatgcaaacatatttgactg-aaa-----------------------------------------------ctgaatgaggacaaccgttctgaaaagcactttagaAGAACGTTTCAGGACTCTCCTAGGAATTTATCTTAAGGAAACACTGttcatgtcatttatcacattctaatatactatctaatgggcttctctatgtttactgtaagtc-tcacctactggaatataaacactgcaagaacaaagatggaatcccaagcacatagaaaagtgcacaaca-----------
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183794041 349 + 184069350 aatgcaaatGTAAGCATTTTTTACAAAAGTAATAAACTGTCTTTAACCAAATGGCAATTTTTTTTCTTTAGCAACA--TGTTTTCAAGGATAGGAAAAGTGACATGCAAGCATGTTTGACAGCAAA-----------------------------------------------CTGAATCAGTACAACCGTTCTGAAAGGCACTTTAGAAGAATGTTTCAGGACTCTTCTAGGAACTGATCTTAAGGGAACACTGttcatgtcatttaccacgttcttacatgctatctaacgggcttctccatgtttactgtaagtc-tcacctactagaatataaatactgcaagaacaaagaTGGAATCCCAAGCACATAGAAGACAGCACAACACATTGTAAGTG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189187429 349 + 189454096 aatgcaaatGTAAGCATTTTTTACAAAAGTAATAAACTGTCTTTAACCAAATGGCAATTTTTTTTCTTTAGCAACA--TGTTTTCAAGGATAGGAAAAGTGACATGCAAGCATGTTTGACAGCAAA-----------------------------------------------CTGAATCAGTACAACCGTTCTGAAAGGCACTTTAGAAGAATGTTTCAGGACTCTTCTAGGAACTGATCTTAAGGGAACACTGttcatgtcatttaccacgttcttacatgctatctaacgggcttctccatgtttactgtaagtc-tcacctactagaatataaatactgcaagaacaaagaTGGAATCCCAAGCACATAGAAGATAGTACAACACATTGTAAGTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178606230 349 + 178775436 aatgcaaatgtaagcATTTTTTACAAAAGTAATAAATTGTCTTTAACcaaatggcaattttttttctttagcaaca--TGTTTTCAAGGATAGGAAAAGTGACATGCAAGCATGTTTGACAGGAAA-----------------------------------------------CTGAATCAGTACAACCGTTCTGAAAGGCACTTTAGAAGAATGTTTCAGGACTCTTCTAGGAACTGATCTTAAGGGAACACTGTTCATGTCATTTACCACGTTCTTACATGCTATCTAACGGGCCTCTCCATGTTTACTGTAAGTC-TCACCTACTAGAATATAAATACTGCAAGAACAAAGATGGAATCCCAAGCACATAGAAGACAGTACAACACATTGTAAGTG
i papAnu2.chr5             C 0 T 11
s chlSab2.chr7             135541162 349 + 135778131 aatgcaaatGTAAGCATTTTTTACAAAAGTAATAAATTGTCTTTAACCAAATGGCAGTTTTTTTTCTTTAGCAACA--TGTTTTCAAGGATAGGAAAAGTGACATGCAAGCATGTTTGACAGGAAA-----------------------------------------------CTGAATCAGTACAACCGTTCTGAAAAGCACTTTAGAAGAATGTTTCAGGACTCTTCTAGGAACTGATCTTAAGGGAACACTGTTCATGTCATTTACCACGTTCTTACATGCTATCTAACGGGCTTCTCCATGTTTACTCTAAGTC-TCACCTACTAGAATATAAATACTGCAAGAACAAAGATGGAATCCCAAGCACACAGAAGACAGCACAACACATTGTAAGTG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190650113 367 - 190850796 AATGAAAATGTAAGC----------AATAAAATTAATTATCTTTAACCAAATGGCATATTTTTTTCTTTAGCAACATATATTTCCAAGGACAGGAAAAGAGCCGTGAAAATATATATGATAGAAAAGTATCATTCCAACCTTTGGAATGACAGTTCCAACTATCATTGGAAGGTTGAATCATTCCAACT-TTCTGAAAAGTACTGTAGAAGAATGTTTC---------------------CTTAAGGGAATACTGTTCGTTTcatttatcactttctaacatactatctaactggcttctttacatttactgtaagtcttcgcctactagaacataaatactgcaggaacaaagaTGGCGTCCGAAGCACCCAGAAGAGAGCATGCCACACTGTAAGTG
i calJac3.chr3             I 4184 C 0
e mm10.chr8                 87799494 3645 - 129401213 I
e canFam3.chr16             18093999 3360 -  59632846 I

a score=18185.000000
s hg38.chr4_KI270925v1_alt    419451 56 +    555799 CTTCCTAACCCCACTGTAAGTGCTTCCTAACCCCACTGTAAGTGCTTCCTAAACCC
s panTro4.chr4             193130840 56 + 193495092 ctTCCTAACCCCACTGTAAGTGCTTCCTAACCCCACTGTAAGTGCTTCCTAAACCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198204439 45 + 198332218 -----------cactgtaagagctTCCTAACCCCACTGTAAGTGCTTCCTAAACCC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113877344 34 + 115148730 -----------cactgtaagtgctTCCTAACCCCACTGTAAGTGC-----------
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189187778 20 + 189454096 ----------------------CTTCCTAACCCCTTCTTAAA--------------
i macFas5.chr5             C 0 C 0
e mm10.chr8                 87799494 3645 - 129401213 I
e canFam3.chr16             18093999 3360 -  59632846 I
e calJac3.chr3             190650480  0 - 190850796 C
e chlSab2.chr7             135541511  0 + 135778131 C
e papAnu2.chr5             178606579 11 + 178775436 T
e rheMac3.chr5             183794390  0 + 184069350 C

a score=31811.000000
s hg38.chr4_KI270925v1_alt    419507 45 +    555799 CACTGTAAGCGTTTCCTAACCGCTTCCTAAATAAATAAAAGATGT
s panTro4.chr4             193130896 45 + 193495092 CACTGTAAGCGTTTCCTAACCGCTTCCTAAATAAATAAAAGATGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198204484 45 + 198332218 CACTGTAAGTGCTTCCTAACAGCTTCCTAAATAAATAAAAGATGT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113877378 33 + 115148730 ------------TTCCTAACCACTTCCTAAATAAATAAAAGATGT
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178606568 45 + 178775436 CATTGTAAGTGCTTCCTAACCCCTTCTTAAATAGATAAAAGATGT
i papAnu2.chr5             T 11 T 34
e mm10.chr8                 87799494 3645 - 129401213 I
e canFam3.chr16             18093999 3360 -  59632846 I
e calJac3.chr3             190650480  0 - 190850796 C
e chlSab2.chr7             135541511  0 + 135778131 C
e macFas5.chr5             189187798  0 + 189454096 C
e rheMac3.chr5             183794390  0 + 184069350 C

a score=2305.000000
s hg38.chr4_KI270925v1_alt    419552 5 +    555799 AAGTA
s panTro4.chr4             193130941 5 + 193495092 AAGTA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198204529 5 + 198332218 AAGTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113877411 5 + 115148730 AAGTG
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87799494 3645 - 129401213 I
e canFam3.chr16             18093999 3360 -  59632846 I
e calJac3.chr3             190650480 0 - 190850796 C
e chlSab2.chr7             135541511 0 + 135778131 C
e papAnu2.chr5             178606613 34 + 178775436 T
e macFas5.chr5             189187798 0 + 189454096 C
e rheMac3.chr5             183794390 0 + 184069350 C

a score=371666.000000
s hg38.chr4_KI270925v1_alt    419557 127 +    555799 CTTCCTAACCCCTttctaaataaataaaagatgtccactaggatttacttaccaaagtggtcactatagcattacttacaatggctaaactggataaatctaaatgttcatcaacgggatactggtt
s panTro4.chr4             193130946 127 + 193495092 CTTCCTAACCCCTtcctaaataaataaaagatgtccactaggatttacttaccaaagtggtcactatagcattacttacaatggctaaactggataaatctaaatgttcatcaacgggatactggtt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198204534 127 + 198332218 CTTCCTAACCCCTtcctaaataaataaaagatgtccaccaggatttacttaccaaagtggtcactatagcattgcttacaatggctaaactggataaatctaaatgttcatcaacgggaaactggtt
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113877416 127 + 115148730 CTTCCTAACCGCTtcctaaataaataaaagatgtccactaggatttatttaccagagtggtcactatagcattgcttacaatggctaaactggataaatctaaacattcatcaatgggaaactggtt
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183794390 127 + 184069350 CTTCCTAACCCCTTCTTaaatagataaaagatgtccaccaggatttacttaacagagtggtcactatagcattgcttacaatggctaaactggataaatctaaacgttcatcaacgggaaactggtt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189187798 107 + 189454096 --------------------TAGATAAAAGatgtccaccaggatttacttaacagagtggtcactatagcattgcttacaatggctaaactggataaatctaaacgttcatcaacgggaaactggtt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178606579 127 + 178775436 CTTCCTAACCCCTTCTTAAATAGATAAAAGATGTCCACCAGGATTTACTTACCAGAGTGGTCACTATAGCATTGCTTACAATGGCTAAACTGGATAAATCGAAACGTTCATCAACGGGAAACTGGTT
i papAnu2.chr5             T 34 C 0
s chlSab2.chr7             135541511 127 + 135778131 CTTCCTAACCCCTTCTTaaatagataaaagatgtccaccaggatttacttaccagagtggtcactatagcattgcttacaatggctaaactggataaatctaaacgttcatcaacgggaaactggtt
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190650480 127 - 190850796 CTTCCTAACCCTTTCTTaaataagtaaaagatgcccaccaggatttatgtaccagagtgctcactgtggcattgcttacaatggctgaactggataaatctaaacgttccccaatgggaaactggtt
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87799494 3645 - 129401213 I
e canFam3.chr16             18093999 3360 -  59632846 I

a score=875874.000000
s hg38.chr4_KI270925v1_alt    419684 279 +    555799 aacaaaataatgatgccactgccataggaggcaaaatcacataatcattagaaagcaagtc-attaaggatgtttaaggctatgagaaaacattcccaatttattaattgggtagagaagaatta-aaaagtgtatatagagtaACATAGTAACCGTATTCAGAAATAGTAATAacactaaaatgttaaccatgatta-cctctggctagtgtgtttata-------------gtcatttttattttcttttctatgctttccatattttctataaCCAGGTAAATAAAATTTTG
s panTro4.chr4             193131073 279 + 193495092 aacaaaataatgatgccactgccatatgaggcaaaatcacataaccattagaaagcaagtc-attaaggatgtttaaggctatgagaaaacattcccaatttattaatagggtagagaagaatta-aaaagtgtatatagagtaACATAGTAACCGTATTCAGAAATAGTAATAacactaaaatgttaaccatgatta-cctctggctagtgtgtttata-------------gtcatttttattttcttttctatgctttccatattttctataaCCAGGTAAATAAAATTTTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198204661 280 + 198332218 aacaaaataatgacgccactgccatacgaggcaaaatcacataaccattagagagcaagtc-attaaggatgtttaaggctatgagaaaacattcccaatttattaatagggtagagaagaatta-aaaagtgtatatacagtaacatagtaactatattaagaaatagtaataacactaaaatgttaaccgtgattaccctctggctagtgtgtttata-------------gtcatttttattttcttttctatgctttccatattttctacaaCCAGGTAAATAAAATTTTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113877543 280 + 115148730 aacaaaataatgatgccaccgccatatgaagcaaaatcacataaccattagaaagcaagtc-attaaggatgtttaaggctatgagaaaacattcccaatttattaatagggtagagaagaatta-aaaagtgtatatagagaaacatactaactgtattcagaaatggtaataacaccaaaatgttaaccatgattaccctctggctagtgtgtttata-------------gtcatttttattttcttttctatgctttccatattttttacaaCCAGGTAAATAAAAATTTG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183794517 280 + 184069350 aacaaaataacaatgccaccgccatatgacgcaaaatcacataaccattagaaagcaagtc-attaaggatgtttaaggctatgagaaaacattcccaatgtgttaatagggtagataataattt-aaaagtgcatatagagtaacatattaactgtattcagaatcacgaataacaccaaaatgttaaccatgattaccctctgcctactgtgtttata-------------gtcatttttattttcctttctatgctttccgtattttctaCAACCAGGAAAATAAAATTTTG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189187905 280 + 189454096 aacaaaataacaatgccaccgccatatgacgcaaaatcacataaccattagaaagCAAGTC-ATTAAGGATGTTTAAGGCTATGAGAAAACATTCCCAATGTGTTAATAGGGTAGATAATAATTT-AAAAGTGCATATAGAGTAACATATTAACTGTATTCAGAATCACGAATAacaccaaaatgttaaccatgattaccctctgcctactgtgtttata-------------atcatttttattttcctttctatgctttccgtattttctaCAACCAGGAAAATAAAATTTTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178606706 280 + 178775436 AACAAAATAACGATGCCACCGCCATATGACGCAAAATCACATAACCATCAGAAAGCAAGTC-ATTAAGGATGTTTAAGGCTATGAGAAAACATTCCCAATGTGTTAATAGGgtagataataattt-aaaagtgcaTATAGAGTAACATATTAACTGTATTCAGAATCACGAATAACACCAAAATGTTAACCATGATTACCCTCTGCCTACTGTGTttata-------------gtcatttttattttcctttctatgctttccatattttctacaaccaggaaaataaaattttg
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135541638 280 + 135778131 aacaaaataacgatgccaccgccatatgacgcaaaatcacataaccattagaaagcaagtc-attaaggatgtttaaggctatgagaaaacattcccaatgtgttaatagggtagagaataattt-aaaagtgtatatagagtaACATATTAACTGTATTCAGAATCACGAATAACACCAAAATGTTAACCATTATTACCCTCTGCCTACTGTGTTTATA-------------GTCATTTTTATTTTCCTTTCTATGCTTTCCACATTTTCTACAACCAGGAAAATAAAATTTTG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190650607 277 - 190850796 aacaaaag---gatgctaccgccgtgtgatgcaaagtcacataaccattagaaagtaagtc-attaagaatatttaaggctatgagaaaacattcaCAGTTTATTCATAGGATAGGGGCAAATTC-CAATGTTTATGTAGAGTAACATATTAACTGTATTCAGAACCaggaataacaccaaaatgttaaccgtgatcaccctctggcttctgtgcttaga-------------gtcactgttattttcttctctctgctttccatattttctacaaCCAGGTAAATATAATTTTG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18097359 267 -  59632846 aaGAaaataaagatacca---ccatacaatagaatattctgtgatcattagaatgtaagtcaattaagacaatcaaaggctatgagaaaatgttcacgatatgttaaaaagttaagaaagtactagaaaagcatatagacaataacatattaatt-tattaagaatta-----------------------ATGATTA-TGTCTGCCTAGTGAGGTTCTAGTGACCTAGTGAGGTCATTTTTACTTTCTTCTTTATGTTTTCCATATTTTCTACAAGCATGTAAATAAAATTTTG
i canFam3.chr16            I 3360 C 0
e mm10.chr8                 87799494 3645 - 129401213 I

a score=4505717.000000
s hg38.chr4_KI270925v1_alt    419963 1220 +    555799  
s panTro4.chr4             193131352 1219 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198204941 1217 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113877823 1231 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183794797 1236 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189188185 1236 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178606986 1236 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135541918 1235 + 135778131  
i chlSab2.chr7             C 0 I 129
s calJac3.chr3             190650884 1230 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87803139 1256 - 129401213  
i mm10.chr8                I 3645 C 0
s canFam3.chr16             18097626 1249 -  59632846  
i canFam3.chr16            C 0 C 0

a score=1581387.000000
s hg38.chr4_KI270925v1_alt    421183 459 +    555799 AGGCATGTTT-TTTGAATGTATTTTCTCCCCGTTTT------CCCAGGCATCATGTTGTT-CGCTAGCT-CAAGGTGCATACCTT-ATTC-TTTTGGTAAGATAATTACAAAGAACCAGTCCTAACTCCTATTTCTGCATGTATGATGAC-------CTACATAGGCAGATTGAAAGTAAAGGTAGACATGGAATACCATGTTTTTAAATCTTTCAAAAATGCATTGATAC--------TC-----TGGCAAGAAAGTAAGAAATATTAAGAATTATGAATCTAAATCAAGCCAGAAACCTGAAAAGGTAAGCAGAGCACT-------AAACCTATTTGTCATCATTGGGCATGTGGGAA-CTTGAGGAGTTTCAGCAACAACTTTTGTGGTCTGATGGGTGG---GTGGTGACAAAC--AAAGACAAAAGCTCAGGCCAGCCCATTAGCCCACCCAGCTCTTCAAAAAGTGGGAAGCCT--G-AGGTCAGAGCAAAGATTAATCA
s panTro4.chr4             193132571 459 + 193495092 AGGCGTGTTT-TTTGAAAGTATTTTCTCCTCGTTTT------CCCAGGCATCATGTTGTT-TGCTAGCT-CAAGGTGCATACCTT-ATTC-TTTTGGTAAGATACTTACAAAGAACCAGTCCTAACTCCTATTTCTGCATGTATGATGAC-------CTACATAGGCAGATTGAAAGTAAGGGTAGACATGGAATACCATGTTTTTAAATCTTTCAAAAATGCATTGATAA--------TC-----TGGCAAGAAAGTAAGAAATATTAAGAATTATGAATCTAAATCAAGCCAGAAACCTGAAAAGGTAAGCAGAGCACT-------AAACTTATTTGTCATCATTGGGCATGTGGGAA-CTTGAGGAGTTTCAGCAACAACTTTTGTGGTCTGATGAGTGA---GTGGGGACAAAC--AAAGACAAAAGCTCAGGCCAGTCCATTAGCCCACCCAGCTCTTCAAAAAGTGGGAAGCCT--G-AGGTCAGAGCAAAGATTAATCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198206158 459 + 198332218 AGGCATGTTT-TTTGAATGTATTTTCTCCCCGTTTT------CCCAGGCATCATGTTGCT-CGCTAGCT-CAAGGTGCATACCTT-ATTC-TTTTGGTAAGATAATTACAAAGAACCAGTCCTAACTCCTATTTCTGCATGTATGATGAC-------CTACATAGGCAGATTGAAAGTAAGGGTAGACATGGAATACCATGTTTTTAAATCTTTCAAAAATGCATTGATGA--------TC-----TGGCAAGAAAGTAAGAAATATTAAGAATTATGAATCTAAATCAAGCCAGAAACCTGAAAAGGTAAGCAGAGCGCT-------AAAACTATTTGTCATCATTGGGCATGTGGGAA-CTTGAGGAGTTTCAGCAACAACTTTTGTGGTCTGATGGGTGG---GTGGGGACAAAC--AAAGACAAAAGCTCAGGCCAGCCCATTAGCCCACCCAGCTCTTCAAAAAGTGGGAAGCCT--G-AGGTCAGAGCAAAGAATAATCA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113879054 458 + 115148730 AGGCATGTTT-TTTGAATGCATTTTCTCCCCGTTTT------CCCAGGCATTATGTTGTT-TGCTAGCT-CAAGGTGCGTACCTT-ATTC-TTTTGGTAAGATAATTACAGAGAACCAGTCCTAAATCCTATCTCTGCATGTATGATGAC-------CTACATAGGCAGATTGAAAATAAGGGTAGATATGGAATACCATGTTTTTAAATCTTTCAAAAATGCATTGATGA--------TC-----TGGCAAGAAAGTAAGAAATATTAAGAATTATGAATCTAAATCAAGCCAGAAACCTGAAAAGGTAAGCAGAGCACT--------AACCTATTTGTCATCATTGGGCATGTGGGAA-CTTGAGGAATTTCAGCAACAACTTTTGTGGTCTGATGGGTGG---GTGGGGACAAAC--AAAGACAAAAGCTCAGGCCAGCCCATTAGCCCACCCAGCTCTTCAAAAAGTGGGAAGCCT--G-AGGTCAGAGCAAAGATTAATCA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183796033 459 + 184069350 AGGCATGTTT-TTTTAATGTATTTTCTTCCCGTTTT------CCCAGGCATCATGTTGTT-CGCTAGCT-CAAGGTGCATACCTT-ATTT-TTTTGGTAAGCTAATTACAGAGAACCAGTCTTAACTCCTATTTCTGTATGTATGATGAC-------CTACACAGGCAGATTGAAAATAAGGGAAGATATGGAATACCATGTTTTTAAAGCTTTCAAAAATGCATTGATGA--------TC-----TGGCAAGAAAGTAAGAAATATTAAGAATTATGAATCTAAGTCAAGCCAGAAACCTG-AAAGGTAAGCAGAGCACT------AAAACCTACTTGTCATCATTGGGCATGTGCGAA-CCTAAGGAATTTCAGCAACAATTTTTGTGGTCTGATGGGTGG---GTGGGGAGAAAC--AAAGACAAAAGCTCTGGCCAACCCATTATCCCACCAAGCTCTTCAAAAAGTGGGAAGCCT--A-AGGTTGAAGCAAAGATTAATCA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189189421 459 + 189454096 AGGCATGTTT-TTTTAATGTATTTTCTTCCCGTTTT------CCCAGGCATCATGTTGTT-CGCTAGCT-CAAGGTGCATACCTT-ATTT-TTTTGGTAAGCTAATTACAGAGAACCAGTCTTAACTCCTATTTCTGTATGTATGATGAC-------CTACACAGGCAGATTGAAAATAAGGGAAGATATGGAATACCATGTTTTTAAAGCTTTCAAAAATGCATTGATGA--------TC-----TGGCAAGAAAGTAAGAAATATTAAGAATTATGAATCTAAGTCAAGCCAGAAACCTG-AAAGGTAAGCAGAGCACT------AAAACCTACTTGTCATCATTGGGCATGTGCGAA-CCTAAGGAATTTCAGCAACAACTTTTGTGGTCTGATGGGTGG---GTGGGGAGAAAC--AAAGACAAAAGCTCTGGCCAACCCATTATCCCACCAAGCTCTTCAAAAAGTGGGAAGCCT--G-AGGTTGAAGCAAAGATTAATCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178608222 459 + 178775436 AGGCatgttt-ttttaatgcattttcttcCCGTTTT------CCCAGGCATCATGTTGTT-CACTAGCT-CAAGGTGCATACCTT-Attt-ttttGGTAAGCTAATTACAGAGAACCAGTCCTAACTCCTATTTCTGTATGTATGATGAC-------CTACATAGGCAGATTGAAAATAAGGGAAGATATGGAATACCATGTTTTTAAAGCTTTCAAAAATGCATTGATGA--------TC-----TGGcaagaaagtaagaaatattaagaattatGAATCTAAGTCAAGCCAGAAACCTG-AAAGGTAAGCAGAGCACT------AAAACCTACTTGTCATCATTGGGCATGTGCGAA-CCTAAGGAATTTCAGCAACAACTTTTGTGGTctgatgggtgg---gtggggagaaac--aaagacaaaagctCTGGCCAACCCATTATCCCACCAAGCTCTTCAAAAAGTGGGAAGCCT--G-AGGTTGAAGCAAAGATTAGTCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135543282 460 + 135778131 agGCATGTTT-TTTTAAGGTATTTTCTCCCCGTTTT------CCCAGGCATCATGTTGTT-CGCTAGCT-CAAGGTGCATACCTT-ATTC-TTTTGGTAAGATAATTACAGAGAACCAGTCCTAACTCCTATTTCTGTATGTATGATGAC-------CTACATAGGCAGATTGAAAATAAGAGAAGATATGGAATACCATGTTTTTAAATCTTTCAAAAATGCATTGATGA--------TC-----TGGCAAGAAAGTAAGAAATATTAAGAATTATGAATCTAAGTCAAGCCAGAAACCTGAAAAGGTAAGCAGAGCACT------AAAACCTACTTGTCATCATTGGGCATGAGCGAA-CCTAAGGAATTTTAGCAACAACTTTTGTGGTCTGATGCGTGG---GTGGGGAGAAAC--AAAGACAAAAGCTCTGGCCAACCCATTATCCCACCAAGCTCTTCAAAAAGTCGGAAGCCT--G-AGGTTGAAGCAAAGATTAATCA
i chlSab2.chr7             I 129 C 0
s calJac3.chr3             190652114 436 - 190850796 AGCCATGTCG-TTTGAATGCGCTTTCT-CCTGTTTT------CCCAGGCATCATGTTGTT-CACCGTCT-CAATGTGCACACCTT-ATTC-TTTTCGTAAGACAATTACAGATAACTAGTC-TAACTCCTATTTCTGCACGTATGATGAC-------CTGGATAGGCAGACCGAAAATAAGGGAAAATATTGAATACC---------------------ATGCACTGGTGA--------TC-----TGGCAAGAAAGTAAGAAATATTAAGAATTATGAATCGAAATCAAGCCAGAAGCCCGGACAGGTTAGCAGAGCACT-------AAACCTATTTCTCATCATTGGGCATGTGGGAA-CAATAGGAATTTCAGCAACAACTTTTGTGGTCTGATGGGTGG---GCGGGGAGAGAC--AAAGACAAAAGCTCAGGCCAGCCCATTAGCCCACCCAGGTCTTCAAAGAGTGGGAAGCCT--G-ACATCAGAGTAAAGATCAATCA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87804395 432 - 129401213 AAGCACACTTATTCAAATATATCACATCCATATTTT------TCCAGGAATCTTTTTTCTATATTATTT-GAGTGTGTGCACTTTAATTC-CTTTAATGATATAACTACAGGGAGCTAGTCTTAACTCCCATTTCTGCATGTGTGATTAT-------CAGGATAAGCAGGAGGAATATAATGGGA-ATATTGGAT-----GTTTTTAAATGTTTTGAAAACATGTTGATGAGGTGGTTTTCTAAAGTGGCATAAAAGCAAACAATAATAAGAAATTTAAATCTAAGTTAAATCAGAAACCTGGATCAGGAAGGAAAGCACA------AAAATCAGTGCATCACCGTTGGGCATCTGCCAAGCTTGATGAATTTCTACTACAGCCTTTA--------------------------------AAACATAAAGGCTAC-----ACCAAATAGCACATC-----CTCCA---AGTGGGACTCCT--GAAGGTTATAGCAAAGATTAAGCT
i mm10.chr8                C 0 C 0
s canFam3.chr16             18098875 482 -  59632846 GAACATGTTTATTTAAATATATTCCCTCCTCCTTCTTTCACATCCAGGAATCATTTTTTT-CACTATCTCCCATACACATATTTTTATTCTTTTTAACACAGCAATTACAAAGAACTAGTCCTAACTCCTATTTCTCTGTGTATGGTTATAGAAATACTAGATAGGCATACTGGTAAT--------ATAATAGGCACAATATCTTTAAACCTTTTTAAAGTACACTGGTGA--------GC-----TGGCAAGAAAGTAAAAAATATTAAGAATTATAAACCTAAGTCAAACCAGAGACCTG-GAAAGTAAGCAGAGCACTAAGACCAAAACTGAGTTGTAACCATTGGATTTTTGCCAAACTCAATGAACCTTAGCTACAACTTTTATAACCTGGTAGGTAGTAAGTGGTAAGAAATAGAAAGACAAAGGTCAAGGCTGACTCCAGAGCCCACCCAGCTTTTAAAAGAGTGGGAATTTTTGA-AGTCCAGAGAAAAGAATAGTCA
i canFam3.chr16            C 0 I 15

a score=32148.000000
s hg38.chr4_KI270925v1_alt    421642 10 +    555799 TTGttttctt
s panTro4.chr4             193133030 10 + 193495092 TCGttttctt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198206617 10 + 198332218 TTGttttctt
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113879512 10 + 115148730 TTGTTTTCTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183796492 10 + 184069350 TCGCtttctt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189189880 10 + 189454096 TCGCTTTCTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178608681 10 + 178775436 tcgctttctt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135543742 10 + 135778131 TTGttttctt
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190652550 10 - 190850796 ttgttttctt
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87804827 10 - 129401213 TTTTCTTTTT
i mm10.chr8                C 0 I 106
e canFam3.chr16             18099357 15 -  59632846 I

a score=596572.000000
s hg38.chr4_KI270925v1_alt    421652 205 +    555799 tcttttttaaaaaaagtttagagtcagggtcaccctgttgcccaggctggagtgcagtggtgcgatcacatcttactgcagcctcaaactcctgggatcaagcgatcctactgcctcagcctcctgagtatctgggactacgggcacacaccacaactgcctatttttatgtatttagataa-ggggtctcaaactcctggcctca
s panTro4.chr4             193133040 205 + 193495092 tctttttttaaaaaagtttagagtcagcgtcaccctgttgcccaggctggagtgcagtggtgcgatcacatcttactgcagcctcaaactcctgggatcaagtgatcctcctgcctcagcctcctgagtatctgggactacgggcacacaccacaactgccgatttttatgtatttagataa-ggggtctcaaactcctggcctca
i panTro4.chr4             C 0 I 308
s ponAbe2.chr4             198206627 205 + 198332218 tcttttttaaaaaaagtttagagtcagggtcaccctgttgcccaggccggagtgcagtggtgcgatcacatcttactgcagcctcaaactcctgggatcaagcgatcctcctgcctcagcctcctgagtatctgggactatgagcacacaccacgactgcctatttttatgtatttagataa-ggggtctcaaactcctggcctca
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113879522 205 + 115148730 TCTTTTTAAAAAAAAGtttagagtcagggtcaccctgttgcccaggctggagtgcagtggtgcgatcacatctcactgcagcctcaaactcctgggatcaagcgatcctcctgcctcagcctcctgagtagctgggactacaggcacacaccacgcctgcctatttttatgtatttagacaa-ggggtctcaaactcctggcctca
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183796502 203 + 184069350 tcttttttaaaaaaagtttagagtcagggtcaccctgttgcccaggctggagtgcagtggtgcgatcacatctcattgcagcctcaaactcctgggatcaagcgatcctcctgcctcagcctcctgagtagctgggactacaggcgcccaccacgcctgcctatttt--tgtgtttagacga-gggtcctcaaactcctggcctca
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189189890 203 + 189454096 TCTTTTTAAAAAAAAGtttagagtcagggtcaccctgttgcccaggctggagtgcagtggtgcgatcacatctcattgcagcctcaaactcctgggatcaagcgatcctcctgcctcagcctcctgagtagctgggactacaggcgcccaccacgcctgcctatttt--tgtgtttagacga-gggtcctcaaactcctggcctca
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178608691 202 + 178775436 tcttttt-aaaaaaagtttacagTCAGggtcaccctgttgcccaggctggagtgcagtggtgcgatcacatctcattgcagcctcaaactcctgggatcaagcgatcctcctgcctcagcctcctgagtagctgggactacaggcgcccaccacgcctGCCTATTTT--TGTGTTTAGACGA-gggtcctcaaactcctggcctca
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135543752 203 + 135778131 tcttttt-aaaaaaagtttagagtcagggtcaccctgttgcccaggctggagtgcagtggtgcgatcacatctcactgcagcctcaaactcctgggatcaagcgatcctcctgcctcagcctcctgagtagctgggactacaggca-ccaccatgcctgcctatttttatgtgtttagataa-gggacctcaaactcctggcctca
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190652560 198 - 190850796 t-------taaaaaaatttagaggcagggtcaccctgttgcccaggctgaagtgcagtggtgcaatcacatctcactgaagcctcaaactcctgggttcaaacaatcctcctgcctcag-ctcctgagtagctgggactacaggcacacaccacgcctgcctatttttattattttagataagggggcctcaaactcctggcctca
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87804837 106 - 129401213 I
e canFam3.chr16             18099357  15 -  59632846 I

a score=205500.000000
s hg38.chr4_KI270925v1_alt    421857 71 +    555799 agcaattcttcgatcttagccccctgaatagctggcattacaggcatgagccaccaggcccagccATCC--AA
s panTro4.chr4             193133553 71 + 193495092 agcaattcttcaatcttagccccctgaatagctggcattataggcatgagccaccaggtccagcCATCC--AA
i panTro4.chr4             I 308 C 0
s ponAbe2.chr4             198206832 71 + 198332218 agcaattcttcaatcttagccccttgaatagctggcattgcaggcatgagccaccaggcccagccATCC--AA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113879727 72 + 115148730 agcaattcttctattttagacgc-tgaatagctggcattacaggcatgagccaccaggcccagccATCCAAAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183796705 71 + 184069350 agcaattcttcgatcttagccccctgaatagctggcattacaggcatgagccaccaggcccagccCTCG--GG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189190093 71 + 189454096 agcaattcttcgatcttagccccctgaatagctggcattacaggcatgagccaccaggcccagccCTCG--GG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178608893 71 + 178775436 agcaattcttcgaTCTtagccccctgaatagctggcattacaggcatgagccaccaggcccagccatcg--gg
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135543955 71 + 135778131 agcaattcttcgatcttagccccctgaatagctggcattacaggcatgagccaccaggcccagccATCG--GG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190652758 71 - 190850796 agcaattcttcggcctcagcccactgaatagctagcattataggcatgagccatcaggcccagccATCC--AG
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87804837 106 - 129401213 I
e canFam3.chr16             18099357 15 -  59632846 I

a score=270776.000000
s hg38.chr4_KI270925v1_alt    421928  93 +    555799 A---------------AAAAAAGGTACCCACATTTGCTATTTAGAA-------CATTCCAGAGGCCAAAT-GAAAGGAGACATCTCAACTC--TGCTCCCAGGAAGCTAGGGCAGAGG
s panTro4.chr4             193133624  93 + 193495092 A---------------AAAAAAGGTACCCACATTTGTTATTTAGAA-------CATTCCAGAGGCCAAAT-GAAAGGAGACATCTCAACTC--TGCTCCCAGGAAGCTAGGGCAGAGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198206903  93 + 198332218 A---------------AAAAAAGGTACCCACATTTGCTATTTAGAA-------CATTCCAAAGGCCAAAT-GGAAGGAGACATCTCAACTC--TGCTCCCAGGAAGCTAGGGCAGAGG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113879799  92 + 115148730 A---------------AAAAAAAGTACCCACATTTGCTATTTAGAA-------CATTCC-GAGGCCAAAT-GAAAGGAGACATCTCAACTC--TGCTCCCAGGAAGCTAGGGCAGAGG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183796776  93 + 184069350 G---------------GCGGGGAGTACCTACATTTGCTATTTAGGA-------CATTACAGAGGCCAAAT-GAAAGGAGACATCTCAGCTT--TGCCCCCAGGAAGCTAGGGCAGAGG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189190164  93 + 189454096 G---------------GCGGGGAGTACCTACATTTGCTATTTAGGA-------CATTACAGAGGCCAAAT-GAAAGGAGACATCTCAGCTT--TGCCCCCAGGAAGCTAGGGCAGAGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178608964  96 + 178775436 g------------ggtgggggAAGTACCTACATTTGCTATTTAGGA-------CATTACAGAGGCCAAAT-GAAAGGAGACATCTCAGCTT--TGCCCCCAGGAAGCTAGGGCAGAGG
i papAnu2.chr5             C 0 T 5
s chlSab2.chr7             135544026 108 + 135778131 GaaaaaaaaaaaaaaaaaaaaGGGTACCTACATTTGCTATGTAGGT-------CATTCCAGAGGCCAAAT-GAAAGGAGACATCTCAGCTT--TGCTCCCAGGAAGCTAGGGCAGAGG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190652829  98 - 190850796 A----------AAAGAAAAAAACGTACCCACATTTGCTATTTAGAA-------CCTTCTAGAAGCCAAAT-GAAATGAGATATCTGAGCTC--AGCTCCCAGGAAGCTAGGGCAGAGG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18099372 101 -  59632846 ---------------AAAAAGCAGTGCCCACATTTTCTAATTGGAACGTTTCCCATTACAGAAGTCAAAGAGAGAGCAGACATCTGATCTCTTTGCTCCCAGG-AGCT-GAGCAGAGG
i canFam3.chr16            I 15 C 0
e mm10.chr8                 87804837 106 - 129401213 I

a score=2800.000000
s hg38.chr4_KI270925v1_alt    422021 1 +    555799 C
s panTro4.chr4             193133717 1 + 193495092 C
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198206996 1 + 198332218 C
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113879891 1 + 115148730 C
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189190257 1 + 189454096 C
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135544134 1 + 135778131 C
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190652927 1 - 190850796 C
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18099473 1 -  59632846 C
i canFam3.chr16            C 0 I 12
e mm10.chr8                 87804837 106 - 129401213 I
e papAnu2.chr5             178609060 5 + 178775436 T
e rheMac3.chr5             183796869 0 + 184069350 C

a score=37995.000000
s hg38.chr4_KI270925v1_alt    422022 20 +    555799 TTGACCAATCAGAGCTCTGG
s panTro4.chr4             193133718 20 + 193495092 TTGGCCAATCAGAGCTCTGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198206997 20 + 198332218 TTGGCCAATCAGAGCTCTGG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113879892 20 + 115148730 TTGGCCAATCAGAGCTCTGG
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189190258 20 + 189454096 TTGGCCAATCAGAGCTCTAG
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135544135 20 + 135778131 TTGGCCAATCAGAGCTCTGG
i chlSab2.chr7             C 0 I 1
s calJac3.chr3             190652928 20 - 190850796 TTGGCCAGTCAGAGCTCTGG
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87804837 106 - 129401213 I
e canFam3.chr16             18099474 12 -  59632846 I
e papAnu2.chr5             178609060  5 + 178775436 T
e rheMac3.chr5             183796869  0 + 184069350 C

a score=10086.000000
s hg38.chr4_KI270925v1_alt    422042 6 +    555799 CCAGCT
s panTro4.chr4             193133738 6 + 193495092 CCAGCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198207017 6 + 198332218 CCAGCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113879912 6 + 115148730 CCAGCT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189190278 6 + 189454096 CCAGCT
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135544156 6 + 135778131 CTAGCT
i chlSab2.chr7             I 1 C 0
s calJac3.chr3             190652948 6 - 190850796 GCAGCT
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87804837 106 - 129401213 I
e canFam3.chr16             18099474 12 -  59632846 I
e papAnu2.chr5             178609060 5 + 178775436 T
e rheMac3.chr5             183796869 0 + 184069350 C

a score=-2408.000000
s hg38.chr4_KI270925v1_alt    422048 7 +    555799 GTAGA--AC
s panTro4.chr4             193133744 7 + 193495092 CTAGA--AC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198207023 7 + 198332218 CTAGA--AC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113879918 7 + 115148730 CTAGA--AC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189190284 5 + 189454096 CTAGG----
i macFas5.chr5             C 0 I 2
s papAnu2.chr5             178609055 5 + 178775436 AGAGG----
i papAnu2.chr5             T 5 C 0
s chlSab2.chr7             135544162 7 + 135778131 CTAGGAC--
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190652954 7 - 190850796 CTAGG--CT
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87804837 106 - 129401213 I
e canFam3.chr16             18099474 12 -  59632846 I
e rheMac3.chr5             183796869 0 + 184069350 C

a score=16304.000000
s hg38.chr4_KI270925v1_alt    422055 5 +    555799 CTTGG
s panTro4.chr4             193133751 5 + 193495092 CTTGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198207030 5 + 198332218 CTTGG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113879925 5 + 115148730 TTTGG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183796869 5 + 184069350 CTTGG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189190291 5 + 189454096 CTTGG
i macFas5.chr5             I 2 C 0
s papAnu2.chr5             178609060 5 + 178775436 CTTGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135544169 5 + 135778131 CTTGG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190652961 5 - 190850796 CTTGG
i calJac3.chr3             C 0 I 13
e mm10.chr8                 87804837 106 - 129401213 I
e canFam3.chr16             18099474 12 -  59632846 I

a score=2800.000000
s hg38.chr4_KI270925v1_alt    422060 1 +    555799 C
s panTro4.chr4             193133756 1 + 193495092 C
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198207035 1 + 198332218 C
i ponAbe2.chr4             C 0 I 34
s nomLeu3.chr7b            113879930 1 + 115148730 C
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183796874 1 + 184069350 C
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189190296 1 + 189454096 C
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178609065 1 + 178775436 C
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135544174 1 + 135778131 C
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87804837 106 - 129401213 I
e canFam3.chr16             18099474 12 -  59632846 I
e calJac3.chr3             190652966 13 - 190850796 I

a score=23769.000000
s hg38.chr4_KI270925v1_alt    422061 11 +    555799 CAATCAGAGCA
s panTro4.chr4             193133757 11 + 193495092 CAATCAGAGCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198207070 11 + 198332218 CAATCAGAGCT
i ponAbe2.chr4             I 34 C 0
s nomLeu3.chr7b            113879931 11 + 115148730 CAATCAGAGCA
i nomLeu3.chr7b            C 0 T 51
s rheMac3.chr5             183796875 11 + 184069350 CAATCAGAGCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189190297 11 + 189454096 CAGTCAGAGCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178609066 11 + 178775436 CAACCAGAGCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135544175 11 + 135778131 CAGTCAGAGCT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87804837 106 - 129401213 I
e canFam3.chr16             18099474 12 -  59632846 I
e calJac3.chr3             190652966 13 - 190850796 I

a score=10306.000000
s hg38.chr4_KI270925v1_alt    422072 6 +    555799 CTGGCC
s panTro4.chr4             193133768 6 + 193495092 CTGGCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198207081 6 + 198332218 CTGGCC
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183796886 6 + 184069350 CTAGCC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189190308 6 + 189454096 CTGGCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178609077 6 + 178775436 CTAGCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135544186 6 + 135778131 CTGGTC
i chlSab2.chr7             C 0 T 34
e mm10.chr8                 87804837 106 - 129401213 I
e canFam3.chr16             18099474 12 -  59632846 I
e calJac3.chr3             190652966 13 - 190850796 I
e nomLeu3.chr7b            113879942 51 + 115148730 T

a score=6111.000000
s hg38.chr4_KI270925v1_alt    422078 3 +    555799 AGC
s panTro4.chr4             193133774 3 + 193495092 AGC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198207087 3 + 198332218 AGC
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183796892 3 + 184069350 AGC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189190314 3 + 189454096 AGC
i macFas5.chr5             C 0 T 60
s papAnu2.chr5             178609083 3 + 178775436 AGC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135544158 3 + 135778131 AGC
i chlSab2.chr7             T 34 C 0
e mm10.chr8                 87804837 106 - 129401213 I
e canFam3.chr16             18099474 12 -  59632846 I
e calJac3.chr3             190652966 13 - 190850796 I
e nomLeu3.chr7b            113879942 51 + 115148730 T

a score=10715.000000
s hg38.chr4_KI270925v1_alt    422081 8 +    555799 TCTAGGAT
s panTro4.chr4             193133777 8 + 193495092 TCTAGGAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198207090 8 + 198332218 TCTAGGAT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183796895 8 + 184069350 TCTAGGAT
i rheMac3.chr5             C 0 T 34
s papAnu2.chr5             178609086 8 + 178775436 TCTAGGAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135544161 8 + 135778131 TCTAGGAC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87804837 106 - 129401213 I
e canFam3.chr16             18099474 12 -  59632846 I
e calJac3.chr3             190652966 13 - 190850796 I
e macFas5.chr5             189190317 60 + 189454096 T
e nomLeu3.chr7b            113879942 51 + 115148730 T

a score=14798.000000
s hg38.chr4_KI270925v1_alt    422089 6 +    555799 CTTGGA
s panTro4.chr4             193133785 6 + 193495092 CTTGGC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198207098 6 + 198332218 CTTGGC
i ponAbe2.chr4             C 0 T 68
s nomLeu3.chr7b            113879891 6 + 115148730 CTTGGC
i nomLeu3.chr7b            T 51 C 0
s rheMac3.chr5             183796869 6 + 184069350 CTTGGC
i rheMac3.chr5             T 34 C 0
s macFas5.chr5             189190257 6 + 189454096 CTTGGC
i macFas5.chr5             T 60 C 0
s papAnu2.chr5             178609094 6 + 178775436 CTTGGC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135544169 6 + 135778131 CTTGGC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87804837 106 - 129401213 I
e canFam3.chr16             18099474 12 -  59632846 I
e calJac3.chr3             190652966 13 - 190850796 I

a score=39411.000000
s hg38.chr4_KI270925v1_alt    422095 17 +    555799 CAATCAGAGCTCTGGCC
s panTro4.chr4             193133791 17 + 193495092 CAATCAGAGCTCTGGCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198207036 17 + 198332218 CAATCAGTGCTCTGGCC
i ponAbe2.chr4             T 68 C 0
s nomLeu3.chr7b            113879897 17 + 115148730 CAATCAGAGCTCTGGCC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183796875 17 + 184069350 CAATCAGAGCTCTAGCC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189190263 17 + 189454096 CAATCAGAGCTCTAGCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178609100 17 + 178775436 CAATCACAGCTCTGGCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135544175 17 + 135778131 CAGTCAGAGCTCTGGTC
i chlSab2.chr7             C 0 T 58
e mm10.chr8                 87804837 106 - 129401213 I
e canFam3.chr16             18099474 12 -  59632846 I
e calJac3.chr3             190652966 13 - 190850796 I

a score=20448.000000
s hg38.chr4_KI270925v1_alt    422112 11 +    555799 AGCTCTAGGAT
s panTro4.chr4             193133808 11 + 193495092 AGCTCTAGGAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198207053 11 + 198332218 AGCTCTAGGAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113879914 11 + 115148730 AGCTCTAGAAC
i nomLeu3.chr7b            C 0 T 34
s rheMac3.chr5             183796892 11 + 184069350 AGCTCTAGGAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189190280 11 + 189454096 AGCTCTAGGAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178609117 11 + 178775436 AGCTCTAGGAT
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87804837 106 - 129401213 I
e canFam3.chr16             18099474 12 -  59632846 I
e calJac3.chr3             190652966 13 - 190850796 I
e chlSab2.chr7             135544192 58 + 135778131 T

a score=80245.000000
s hg38.chr4_KI270925v1_alt    422123 34 +    555799 CTTGGCCAATCAGAGCTCTGG-CCAGCTCTAGGAT
s panTro4.chr4             193133819 34 + 193495092 CTTGGCCAATCAGTGGTCTGG-CCAGCTCTAGGAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198207064 34 + 198332218 CTTGGCCAATCAGAGCTCTGG-CCAGCTCTAGGAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113879891 34 + 115148730 CTTGGCCAATCAGAGCTCTGG-CCAGCTCTAGAAC
i nomLeu3.chr7b            T 34 T 34
s rheMac3.chr5             183796903 34 + 184069350 CTTGGCCAGTCAGAGCTCTGG-CCAGCTCTAGGAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189190291 34 + 189454096 CTTGGCCAGTCAGAGCTCTGG-CCAGCTCTAGGAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178609128 34 + 178775436 CTTGGCCAGTCAGAGCTCTGG-CCAGCTCTAGGAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135544134 35 + 135778131 CTTGGCCAATCAGAGCTCTGGTCTAGCTCTAGGAC
i chlSab2.chr7             T 58 C 0
e mm10.chr8                 87804837 106 - 129401213 I
e canFam3.chr16             18099474 12 -  59632846 I
e calJac3.chr3             190652966 13 - 190850796 I

a score=10696.000000
s hg38.chr4_KI270925v1_alt    422157 4 +    555799 CTTG
s panTro4.chr4             193133853 4 + 193495092 CTTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198207098 4 + 198332218 CTTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113879891 4 + 115148730 CTTG
i nomLeu3.chr7b            T 34 C 0
s rheMac3.chr5             183796937 4 + 184069350 CTTG
i rheMac3.chr5             C 0 T 68
s macFas5.chr5             189190325 4 + 189454096 CTTG
i macFas5.chr5             C 0 T 68
s papAnu2.chr5             178609162 4 + 178775436 CTTG
i papAnu2.chr5             C 0 T 68
s chlSab2.chr7             135544169 4 + 135778131 CTTG
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87804837 106 - 129401213 I
e canFam3.chr16             18099474 12 -  59632846 I
e calJac3.chr3             190652966 13 - 190850796 I

a score=67189.000000
s hg38.chr4_KI270925v1_alt    422161 30 +    555799 GCCAATCAGTGCTCTGG-CCAGCTGTAGGAT
s panTro4.chr4             193133857 30 + 193495092 GCCAATCAGAGCTCTGG-CCAGCTCTAGGAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198207102 30 + 198332218 GCCAATCAGTGCTCTGG-CCAGCTCTAGGAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113879895 30 + 115148730 GCCAATCAGAGCTCTGG-CCAGCTCTAGAAC
i nomLeu3.chr7b            C 0 T 34
s rheMac3.chr5             183796873 30 + 184069350 GCCAATCAGAGCTCTAG-CCAGCTCTAGGAT
i rheMac3.chr5             T 68 T 34
s macFas5.chr5             189190261 30 + 189454096 GCCAATCAGAGCTCTAG-CCAGCTCTAGGAT
i macFas5.chr5             T 68 T 34
s papAnu2.chr5             178609098 30 + 178775436 GCCAATCACAGCTCTGG-CCAGCTCTAGGAT
i papAnu2.chr5             T 68 T 68
s chlSab2.chr7             135544173 31 + 135778131 GCCAGTCAGAGCTCTGGTCCAGCTCTAGGAC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87804837 106 - 129401213 I
e canFam3.chr16             18099474 12 -  59632846 I
e calJac3.chr3             190652966 13 - 190850796 I

a score=82527.000000
s hg38.chr4_KI270925v1_alt    422191 34 +    555799 CTTGGCCAATCAGAGCTCTGGCCAGCTCTAGGAT
s panTro4.chr4             193133887 34 + 193495092 CTTGGCCAATCAGTGCTCTGGCCAGCTCTGGGAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198207132 34 + 198332218 CTTGGCCAATCAGAGCTCTGGCCAGCTCTAGGAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113879891 34 + 115148730 CTTGGCCAATCAGAGCTCTGGCCAGCTCTAGAAC
i nomLeu3.chr7b            T 34 C 0
s rheMac3.chr5             183796869 34 + 184069350 CTTGGCCAATCAGAGCTCTAGCCAGCTCTAGGAT
i rheMac3.chr5             T 34 T 34
s macFas5.chr5             189190257 34 + 189454096 CTTGGCCAATCAGAGCTCTAGCCAGCTCTAGGAT
i macFas5.chr5             T 34 T 34
s papAnu2.chr5             178609060 34 + 178775436 CTTGGCCAACCAGAGCTCTAGCCAGCTCTAGGAT
i papAnu2.chr5             T 68 C 0
s chlSab2.chr7             135544204 34 + 135778131 CTTGGCCAGTCAGTGCTCTGGCCAGCTCTAGGAT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87804837 106 - 129401213 I
e canFam3.chr16             18099474 12 -  59632846 I
e calJac3.chr3             190652966 13 - 190850796 I

a score=31734.000000
s hg38.chr4_KI270925v1_alt    422225 14 +    555799 CTTGGCCAATCAGT
s panTro4.chr4             193133921 14 + 193495092 CTTGGCCAATCAGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198207166 14 + 198332218 CTTGGCCAATCAGT
i ponAbe2.chr4             C 0 T 68
s nomLeu3.chr7b            113879925 14 + 115148730 TTTGGCCAATCAGA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183796869 14 + 184069350 CTTGGCCAATCAGA
i rheMac3.chr5             T 34 C 0
s macFas5.chr5             189190257 14 + 189454096 CTTGGCCAATCAGA
i macFas5.chr5             T 34 C 0
s papAnu2.chr5             178609094 14 + 178775436 CTTGGCCAATCACA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135544238 14 + 135778131 CTTGGCCAATCAGA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87804837 106 - 129401213 I
e canFam3.chr16             18099474 12 -  59632846 I
e calJac3.chr3             190652966 13 - 190850796 I

a score=21617.000000
s hg38.chr4_KI270925v1_alt    422239 9 +    555799 GCTCTGGCC
s panTro4.chr4             193133935 9 + 193495092 GCTCTGGCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198207112 9 + 198332218 GCTCTGGCC
i ponAbe2.chr4             T 68 C 0
s nomLeu3.chr7b            113879939 9 + 115148730 GCACTGGCC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183796883 9 + 184069350 GCTCTAGCC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189190271 9 + 189454096 GCTCTAGCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178609108 9 + 178775436 GCTCTGGCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135544252 9 + 135778131 GCTCTGGCC
i chlSab2.chr7             C 0 T 103
e mm10.chr8                 87804837 106 - 129401213 I
e canFam3.chr16             18099474 12 -  59632846 I
e calJac3.chr3             190652966 13 - 190850796 I

a score=28434.000000
s hg38.chr4_KI270925v1_alt    422248 11 +    555799 AGCTCTAGGAT
s panTro4.chr4             193133944 11 + 193495092 AGCTCTAGGAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198207121 11 + 198332218 AGCTCTAGGAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113879948 11 + 115148730 AGCTCTAGGAT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183796892 11 + 184069350 AGCTCTAGGAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189190280 11 + 189454096 AGCTCTAGGAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178609117 11 + 178775436 AGCTCTAGGAT
i papAnu2.chr5             C 0 T 68
s chlSab2.chr7             135544158 11 + 135778131 AGCTCTAGGAC
i chlSab2.chr7             T 103 C 0
e mm10.chr8                 87804837 106 - 129401213 I
e canFam3.chr16             18099474 12 -  59632846 I
e calJac3.chr3             190652966 13 - 190850796 I

a score=33204.000000
s hg38.chr4_KI270925v1_alt    422259 14 +    555799 CTTGGCCAATCAGA
s panTro4.chr4             193133955 14 + 193495092 CTTGGCCAATCAGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198207132 14 + 198332218 CTTGGCCAATCAGA
i ponAbe2.chr4             C 0 I 34
s nomLeu3.chr7b            113879959 14 + 115148730 CTTGGCCAATGAGA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183796903 14 + 184069350 CTTGGCCAGTCAGA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189190291 14 + 189454096 CTTGGCCAGTCAGA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178609060 14 + 178775436 CTTGGCCAACCAGA
i papAnu2.chr5             T 68 C 0
s chlSab2.chr7             135544169 14 + 135778131 CTTGGCCAGTCAGA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87804837 106 - 129401213 I
e canFam3.chr16             18099474 12 -  59632846 I
e calJac3.chr3             190652966 13 - 190850796 I

a score=8148.000000
s hg38.chr4_KI270925v1_alt    422273 3 +    555799 GCT
s panTro4.chr4             193133969 3 + 193495092 GCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198207180 3 + 198332218 GCT
i ponAbe2.chr4             I 34 C 0
s nomLeu3.chr7b            113879973 3 + 115148730 GCT
i nomLeu3.chr7b            C 0 T 34
s rheMac3.chr5             183796917 3 + 184069350 GCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189190305 3 + 189454096 GCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178609074 3 + 178775436 GCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135544183 3 + 135778131 GCT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87804837 106 - 129401213 I
e canFam3.chr16             18099474 12 -  59632846 I
e calJac3.chr3             190652966 13 - 190850796 I

a score=41055.000000
s hg38.chr4_KI270925v1_alt    422276 17 +    555799 CTGG-CCAGCTCTAGGAT
s panTro4.chr4             193133972 17 + 193495092 CTGG-CCAGCTCTAGGAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198207183 17 + 198332218 CTGG-CCAGCTCTAGGAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113879942 17 + 115148730 CTGG-CCAGCTCTAGGAT
i nomLeu3.chr7b            T 34 C 0
s rheMac3.chr5             183796920 17 + 184069350 CTGG-CCAGCTCTAGGAT
i rheMac3.chr5             C 0 T 68
s macFas5.chr5             189190308 17 + 189454096 CTGG-CCAGCTCTAGGAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178609077 17 + 178775436 CTAG-CCAGCTCTAGGAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135544186 18 + 135778131 CTGGTCCAGCTCTAGGAC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87804837 106 - 129401213 I
e canFam3.chr16             18099474 12 -  59632846 I
e calJac3.chr3             190652966 13 - 190850796 I

a score=10696.000000
s hg38.chr4_KI270925v1_alt    422293 4 +    555799 CTTG
s panTro4.chr4             193133989 4 + 193495092 CTTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198207200 4 + 198332218 CTTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113879959 4 + 115148730 CTTG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183796869 4 + 184069350 CTTG
i rheMac3.chr5             T 68 C 0
s macFas5.chr5             189190325 4 + 189454096 CTTG
i macFas5.chr5             C 0 T 34
s papAnu2.chr5             178609094 4 + 178775436 CTTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135544204 4 + 135778131 CTTG
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87804837 106 - 129401213 I
e canFam3.chr16             18099474 12 -  59632846 I
e calJac3.chr3             190652966 13 - 190850796 I

a score=64134.000000
s hg38.chr4_KI270925v1_alt    422297 30 +    555799 GCCAATCAGAGCTCTCGCCAGCTCTAGGCT
s panTro4.chr4             193133993 30 + 193495092 GCCAATCAGAGCTCTCACCAGCTCTAGGCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198207204 30 + 198332218 GCCAATCAGAGCTCTCACCTGCTCTAGGCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113879963 30 + 115148730 GCCAATGAGAGCTCTCACCAGCTCTAGGAT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183796873 30 + 184069350 GCCAATCAGAGCTCTAGCCAGCTCTAGGAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189190295 30 + 189454096 GCCAGTCAGAGCTCTGGCCAGCTCTAGGAT
i macFas5.chr5             T 34 C 0
s papAnu2.chr5             178609098 30 + 178775436 GCCAATCACAGCTCTGGCCAGCTCTAGGAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135544208 30 + 135778131 GCCAGTCAGTGCTCTGGCCAGCTCTAGGAT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87804837 106 - 129401213 I
e canFam3.chr16             18099474 12 -  59632846 I
e calJac3.chr3             190652966 13 - 190850796 I

a score=6876.000000
s hg38.chr4_KI270925v1_alt    422327 2 +    555799 CT
s panTro4.chr4             193134023 2 + 193495092 CT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198207234 2 + 198332218 CT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113879993 2 + 115148730 CT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183796903 2 + 184069350 CT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189190325 2 + 189454096 CT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178609128 2 + 178775436 CT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135544238 2 + 135778131 CT
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             18099486 2 -  59632846 CT
i canFam3.chr16            I 12 C 0
e mm10.chr8                 87804837 106 - 129401213 I
e calJac3.chr3             190652966 13 - 190850796 I

a score=4095.000000
s hg38.chr4_KI270925v1_alt    422329 1 +    555799 T
s panTro4.chr4             193134025 1 + 193495092 T
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198207236 1 + 198332218 T
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113879995 1 + 115148730 T
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183796905 1 + 184069350 T
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189190327 1 + 189454096 T
i macFas5.chr5             C 0 T 11
s papAnu2.chr5             178609130 1 + 178775436 T
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135544240 1 + 135778131 T
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87804943 1 - 129401213 T
i mm10.chr8                I 106 C 0
s canFam3.chr16             18099488 1 -  59632846 T
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190652966 13 - 190850796 I

a score=49326.000000
s hg38.chr4_KI270925v1_alt    422330 23 +    555799 TGCCAATCAGAGC-TCTAGCCAGT
s panTro4.chr4             193134026 23 + 193495092 CACCAATCAGAGC-TCTAGCCAGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198207237 23 + 198332218 CGCCAATCAGAGC-TCTAGCCGGT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113879996 23 + 115148730 CGCCAATCAGAGC-TCTAGCCAGT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183796906 23 + 184069350 GGCCAGTCAGAGC-TCTGGCCAGC
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178609131 23 + 178775436 GGCCAGTCAGAGC-TCTGGCCAGC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135544241 23 + 135778131 GGCCAATCAGAGC-TCTGGCCTGC
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87804944 23 - 129401213 TGGCAGCCAGCAC-TCTGACCAGA
i mm10.chr8                C 0 C 0
s canFam3.chr16             18099489 24 -  59632846 GACCAATCAGAGCTTCTGCCCAGG
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190652966 13 - 190850796 I
e macFas5.chr5             189190328 11 + 189454096 T

a score=117616.000000
s hg38.chr4_KI270925v1_alt    422353 40 +    555799 TCTAGGATCTTGAGAAAGCAATGCCAAGCTCTGAGGAAAG
s panTro4.chr4             193134049 40 + 193495092 TCTAGGATCTTGAGAAAGCGATGCCAAGCTCTGAGGAAAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198207260 40 + 198332218 TCTAGGATCTTGAGAAACCGATGCCAAGCTCTGAGGAAAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113880019 40 + 115148730 TCTAGGATCTTGAGAGAGCGATGCCAAGCTCTGAGGAAAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183796929 40 + 184069350 TCTAGGATCTTGAGAGAGCGATGCCAAGCTCTGAGGAAAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189190317 40 + 189454096 TCTAGGATCTTGAGAGAGCGATGCCAAGCTCTGAGGAAAG
i macFas5.chr5             T 11 C 0
s papAnu2.chr5             178609154 40 + 178775436 TCTAGGATCTTGAGAGAGCGATGCCAAGCTCTGAGGAAAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135544264 40 + 135778131 TCTAGGATCTTGAGAGAGTGATGCCAAGCTCTGATGAAAG
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87804967 24 - 129401213 TCTAGGGT-----GGAAATAATGTGAAGT-----------
i mm10.chr8                C 0 C 0
s canFam3.chr16             18099513 40 -  59632846 CCTAGGATCTTGAGAAAGTGATGCAAAGCTAGGAGGATTG
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190652966 13 - 190850796 I

a score=2656183.000000
s hg38.chr4_KI270925v1_alt    422393 791 +    555799  
s panTro4.chr4             193134089 791 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198207300 791 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113880059 789 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183796969 784 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189190357 784 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178609194 783 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135544304 781 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190652979 785 - 190850796  
i calJac3.chr3             I 13 C 0
s mm10.chr8                 87804991 751 - 129401213  
i mm10.chr8                C 0 I 697
s canFam3.chr16             18099553 741 -  59632846  
i canFam3.chr16            C 0 C 0

a score=1181806.000000
s hg38.chr4_KI270925v1_alt    423184 353 +    555799 TGCTCTAATTGGCCTGAAGAAGTGGTCCTTGCATCAGGCGGTTCTGTAGTAGAACAaaggtcttaatttgagatctaattgatccagttaatatgtgtgagttcagacaactcccttaatgctttaaggctcagcttcctcatctataaatt-agcgtgatactcatcttccctgtctgccta--agggttgttgtaaagatcaaataaTGATTGTTGCCAGTAAAATCATAAAATGTtcttccaagcacttggaaggaagaaacttaagattactcttgaataattagattgtgaaatcaagacataaagactcagaaccaagctaggtaatgtctccttaagaaaacagaatga
s panTro4.chr4             193134880 353 + 193495092 TGCTCTAATTGGCCTGAAGAAGTGGTCCTTGCATCAGGCGGTCCTGTAGTAGAACAaaggtcttaatttgagatctaatttatccagttaatatgtgtgaattcagaaaaccctcttaatgctttaaggctcagcttcctcatctataaatt-ggggtgatactcatcttctctgtctgccta--agtgttgttgtaaagatcaaataaTGATTGTTGCCAGTAAAATCATAAAATGTtcttccaagcacttggaaggaagaaacttaaggttactcttgaataattagattgtgaaatcaagacacaaagactcagaaccaagctaggtaatgtctccttaagaaaacagaatga
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198208091 353 + 198332218 tgctCTAATTGGCCTGAAGAAGTGGTCCTTGCATCAGGCGGTCCTGTAGTAGAACAaaggtcttaatttgagatctaatttatccagttaatatgtgtgaattcagacaaccctcttaatgctttaaggctcagcttcctcatctataaatt-ggggtcatactcatcttccctgtctgccta--agggttgttgtaaagatcaaataaTGATTGTTGCCAGTAAAATCATAAAATGTtcttccaggcacttggaaggatgaaacttaaggttactcttgaataattagattgtgaaatcaagacataaagactcagaaccaagctaggtaatgtctccttaagaaaacagaatga
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113880848 353 + 115148730 TGCTCTAATTGGCCTGAAGAGGTGGTCCTTGCATCAGGtggtcctgtagtagagcaaaggtcttaatttgagatctaatttatccagttaacatgtgtgaattcagacaaccatcttaatgccttaaggctcagcttcctcatctataaatt-ggggtgatactcatcttccctgtctgccta--agggttgttgtaaagatcaaataaTGATTGTTGCCAGTAAAATCATAAAATGTtcttccaggcacttggaaggaagaaacttaaggctactcttgaataattagattgtgaaatcaagacataaggaatcagaaccaagctaggtaatgtcaccttaagaaaacagaatga
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183797753 353 + 184069350 TGCTCTAATTGGCCGGAAGAAGTGGTCCTTGCATCAGGCGGTCCTATAGTAGAACAaagatcttaatttgagatctaatttatccagttaatatgtgtgaattcagataaccctcttaatgctttaaggctcagcttcctcatctataaatt-ggggttctactcatcttccctgtctgtcta--agggttgctgtaaagatcaaataaTGATCGTTGTCAGTAAAATCATAAAATGTtcttccaggcacttggaaggaagaaacttaagattactcttgaataactagattgtgaaatcaagacataaagaatcagaaccaagctaggtaatgtctccttcagaaaacagaatga
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189191141 353 + 189454096 TGCTCTAATTGGCCGGAAGAAGTGGTCCTTGCATCAGGCGGTCCTATAGTAGAACAaagatcttaatttgagatctaatttatccagttaatatgtgtgaattcagataaccctcttaatgctttaaggctcagcttcctcatctataaatt-ggggttctactcatcttccctgtctgtcta--agggttgctgtaaagatcaaataaTGATCGTTGTCAGTAAAATCATAAAATGTtcttccaggcacttggaaggaagaaacttaagattactcttgaataactagattgtgaaatcaagacataaagaatcagaaccaagctaggtaatgtctccttcagaaaacagaatga
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178609977 349 + 178775436 TGCTCTAATTGGCCGGAAGAAGTGGTCCTTGCATCAGGCGGTCCTATAGTAGAACAAAGATCTTAATTTGAGATCTAATTTACCCAGTTAATATGTGTGAATTCAGATAACCCTCTTAATGCTTTAaggctcagcttcctcatctataaatt-ggggTTCTACTCATCTTCC----CTGTCTA--AGGGTTGCTGTAAAGATCAAATAATGATCGTTGTCagtaaaatcataaaatgttcTTCCAGGCACTTGGAAGGAAGAAACTTAAGATTACTCTTGAATAACTAGATTGTGAAATCAAGACATAAAGAATCAGAACCAAGCTAGGTAATGTCTCcttcagaaaacagaatga
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135545085 353 + 135778131 tgctCTAATTGGCCGGAAGAAGTGGTCCTTGCATCAGGTGGTCCTGTAGTAGAACAaaggtcttaatttgagatctaatttatccagttaatatgtgtgaattcagataaccctcttaatgctttaaggctcagcttcctcatctataaatt-ggggttctactcatcttccctgtctgccta--agggttgctgtaaagatcaaataaTGATTGTTGTCAGTAAAATCATAAAATGTtcttccaggcacttggaaggaagaaacttaagattactcttgaataattagattgtgaaatcaagacataaagaatcagaaccaagctaggtaatgtctccttaagaaaacagaatga
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190653764 350 - 190850796 TACTCTAATTGGCCTAAGGAAGCTGTCCTTGCATCAGGTGGTCCTGTAGTAGAACgaaggtctcaatttgaggtctaatgtatccagtcagtatgtgtgaattcagacaaatctcctaatgctttaaggctcagcttcctcatctgtaaattgggggtgatactcgtcttccctgtctggcaa--agggttgttgtaaagatcaaataaTGATTGTTGCTAGTAAAATTATAATATGCTCTTTTAGGCactcagaagcaagaaacttaagattactcttgaataattagattgtgaagtcaagac--aaacaatcagaaccaaactaggtaatgtctccttaagaaaac--aatga
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18100294 336 -  59632846 TGTTCTAGTTGATGTAAAGAAATGATCTT--CAACAGGCAAGCCTgaattaa---gaatatcttaatttgaatactggtttatttaatcactatgtgtgaatttggacaaattttctaatgctttaagccccaatttccttatctatttatt--gggtatgattcatttgccctatccgcctaacaggattgttgtgaaggtcaaatAGTAATTGTTGCCAGGAAAACAATAAAATGTTCTTCTAACCACTTGGAAACAAGAAAATTAAGATCACTCTCCGAGAATT---TTGTAtcacttatgcat--------ggaatctagcaagctga--actcataaaaacagtagaatga
i canFam3.chr16            C 0 I 109
e mm10.chr8                 87805742 697 - 129401213 I

a score=2684209.000000
s hg38.chr4_KI270925v1_alt    423537  998 +    555799  
s panTro4.chr4             193135233  998 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198208444  997 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113881201  966 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183798106  959 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189191494  957 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178610326  960 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135545438  957 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190654114 1066 - 190850796  
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87805742  697 - 129401213 I
e canFam3.chr16             18100630  109 -  59632846 I

a score=2037196.000000
s hg38.chr4_KI270925v1_alt    424535 618 +    555799  
s panTro4.chr4             193136231 639 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198209441 618 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113882167 618 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183799065 617 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189192451 617 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178611286 617 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135546395 612 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190655180 609 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18100739 634 -  59632846  
i canFam3.chr16            I 109 C 0
e mm10.chr8                 87805742 697 - 129401213 I

a score=776545.000000
s hg38.chr4_KI270925v1_alt    425153 303 +    555799 AA--ttt---------------------------------------------------tattgtttttcagatggagtcttgttctgttgcccagcc-tggagtgca--gtggtgcgatctcgactcactgcagcctcggcttcccgggttcaagtgattctcctgcctcagcctcctgagtagctgggactacagccgcccaccaccacacctagctaatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcgaactcctgagctcgtgatccacctgtctcagcctcccaaagtgctggaattacaagcatgagccaccatgcctggccTGTTTTTG
s panTro4.chr4             193136870 303 + 193495092 AA--ttt---------------------------------------------------tattgtttttcagatggagtcttgttctgttgcccagcc-tggagtgca--gtggtgcgatctcggctcactgcaacctcggcctcccgggttcaggtgattcccctgcctcagccccccgagtagctgggacgatagccgcccaccaccacacctagctaatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcaaactcctgagctcgtgatccacctgtctcagcctcccaaagtgctggaattacaagcatgagccaccatgcctggccTGTTTTTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198210059 305 + 198332218 AAttttt---------------------------------------------------ttttgtttttcagatggagtcttgttctgttgcccagct-tggagtgca--gtggcctgatctcggcacactgcaacctcggcctcccgggttcaggtgattctcctgcctcagcctcccaagcagctgggactacagccgcccaccaccacacccagctaatttttgtatttttagcagagatggggtttcaccatgttggccaggctgctcttgaactcctgagctcatgatccgcctgcctcagcctcccaaagtgctggaattacaagcataagccaccatgcctggccTGTTTTTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113882785 301 + 115148730 AA--ttt---------------------------------------------------tt---tttttcagatggagtctagctctgttgcccagccttggagtgcg--gtggcgtgatctcggctcactgcaaccttcgcctcctgggttcaagtgattctcctgcctcagcctcccgagtagctgggattacaggcatgcaccaccatgcccggctaatttttgtatttttagtagagatggggtttcaccatgttggccaggctgctctcgaactcctgagctcgtgattcgcctgcctcagcctcccaaagtgctggaattacaagcatgagccaccatgactggccTGTTTTTC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183799682 304 + 184069350 AA--ttta--------------------------------------------------ttttttttttcagatggagtcttgccctatcacccaggc-tggagttca--atggcacgatctcggctcactgcaacctccgcctcctgggttcaagtgattctcctgcctcagcctcctgagtagctgggactacagcctcccaccaccatgcccagctaatttttgtatttttggtagagacagggtttcaccgtgttggccaggttggtctcaaactcctgagcttgtgatctccctgcctcagcctcccaaagtgctggaattacaagcgtgagccaccatgcctggccTGTTTTTC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189193068 305 + 189454096 AA--ttta-------------------------------------------------tttttttttttcagatggagtcttgccctatcacccaggc-tggagttca--atggcacgatctcggctcactgcaacctccgcctcctgggttcaagtgattctcctgcctcagcctcctgagtagctgggactacagcctcccaccaccatgcccagctaatttttgtatttttggtagagacagggtttcaccgtgttggccaggttggtctcaaactcctgagcttgtgatctacctgcctcagcctcccaaagtgctggaattacaagcatgagccaccatgcctggccTGTTTTTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178611903 304 + 178775436 aa--ttta--------------------------------------------------ttttttttttcagatggagtcttgccctatcacccaggc-tggagttca--atggcacgatctcggctcactgcaacctccgcctcctgggttcaagtgattctcctgcctcagcctcctgagtagctgggactacagcctcccaccaccatgcccagctaatttttgtatttttggtagagacagggtttcaccgtgttggccaggttggtctcaaactcctgagcttgtgatctacctgcctcagcctcccgaagtgctggaattacaagcatgagccaccatgcctggcctgtttttc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135547007 298 + 135778131 AA--tttt-------------------------------------------------tttttttttttcagatggagtctcgccctatcacccaggc-tggagtgca--atggcgcaatctcggctcactgcaacctccgcctcctg-------gtgattctcctgcctcagcctcccgagtagctgggactatagtctctcaccaccacgcctagctaatttttgtatttttggtagagacagggtttcaccgtgttggccaggttggtctcaaactcctgagctcgtgatccacctgcctcagcctcccaaagtgctggaattacaagcatgagccaccatacctggccTGCTTTTC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190655789 354 - 190850796 Tc--ttttttcctttctctctccttccttctttccctccctgccttcctccctcccatctttcttttctcccttccgtccttccttccttcctAGAC-AGAGTCTCACTTTGTAgccatctgggctcactataacctgcacc-cacaggttcaagcgattctcctgcctcagcctcccaagcagctgggactacaggtgcctgccaccatgcccagctaatttttgtatttttaatagaaacc-agtttcatcgtgttgtccaggttggcctcaaattcctgacctcatgatctgcccgcctctgcctctcaaagtgctgagattacaagcatgagctactgtgcccagccTGTTTTTC
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87805742 697 - 129401213 I
e canFam3.chr16             18101373   0 -  59632846 C

a score=229491.000000
s hg38.chr4_KI270925v1_alt    425456 62 +    555799 AATTTTAATTAAGTCTGATACAAATTAATATTCTATTCTAAAATCTCATCAGTGGCAAAATA
s panTro4.chr4             193137173 62 + 193495092 AATTTTAATTAAGTCTGATACAAATTAATATTCTATTCTAAAATCTCATCAGTGGCAAAATA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198210364 62 + 198332218 AATTTTAATTAAGTCTGATACAAATTAATATTCTATTCTAAAATCTCATCAGTGGCAAAATA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113883086 62 + 115148730 AATTTTAATTAAGTCTGATACAAATTAATATTTTATTCAAAAATCTCATCAGTGGCAAAATA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183799986 62 + 184069350 AATTTTAATTAAGTCTGATACAAATTAATATTTTATTCTAAAATTTCATCAGTGGCAAAATA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189193373 62 + 189454096 AATTTTAATTAAGTCTGATACAAATTAATATTTTATTCTAAAATTTCATCAGTGGCAAAATA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178612207 62 + 178775436 aattttaattaagtctgatacaaattaatattttattctaaaatttcatcAGTGGCAAAATA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135547305 62 + 135778131 AATTTTAATTAAATCTGATACAAATTAATATTTTATTCTAAAATTTCATCAATGGCAAAATA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190656143 62 - 190850796 CATTTTAATTAAGTCTGACACAAATTAATATTTTATTCTAAAATCTCATCAGTGGCAAAGCA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18101373 60 -  59632846 AATTTTAATT--GTCTGATACAAATTGATATTTCACTCTAAAATCTTTTCAGTGGCTAAATA
i canFam3.chr16            C 0 I 3
e mm10.chr8                 87805742 697 - 129401213 I

a score=10476.000000
s hg38.chr4_KI270925v1_alt    425518 3 +    555799 GTC
s panTro4.chr4             193137235 3 + 193495092 GTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198210426 3 + 198332218 GTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113883148 3 + 115148730 GTC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183800048 3 + 184069350 GTC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189193435 3 + 189454096 GTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178612269 3 + 178775436 GTC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135547367 3 + 135778131 GTC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190656205 3 - 190850796 GTC
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87805742 697 - 129401213 I
e canFam3.chr16             18101433 3 -  59632846 I

a score=1637383.000000
s hg38.chr4_KI270925v1_alt    425521 577 +    555799  
s panTro4.chr4             193137238 577 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198210429 575 + 198332218  
i ponAbe2.chr4             C 0 I 394
s nomLeu3.chr7b            113883151 566 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183800051 585 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189193438 595 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178612272 587 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135547370 599 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190656208 569 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18101436 600 -  59632846  
i canFam3.chr16            I 3 C 0
e mm10.chr8                 87805742 697 - 129401213 I

a score=248699.000000
s hg38.chr4_KI270925v1_alt    426098 121 +    555799 atatttatcatagaaaaaaca------------caaactaacaa-tctaaaaatatttagtgatttattttaaaatagtaataataaacctattac---------------atgtt-----------------------aat-taaataacatttttatttaaaatCTAtttt
s panTro4.chr4             193137815 121 + 193495092 atatttatcatagaaaaaata------------caaactaacaa-tctaaaaatatttagtgatttattttaaaatactaataataaacctattac---------------atgtt-----------------------aat-taaataatatttttacttaaaatCTAtttt
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113883717 117 + 115148730 atatttatcatagaaaaaata------------caaactaacaa-tctaaaaa----tagtgatttattttaaaatagtaataataaacctattac---------------atgtt-----------------------aat-taaataacatttttatttaaaatCTAtttt
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183800636 154 + 184069350 atatttatcataaaaaaacta------------caaactaacaa-tttaaaaatacttagtgatttattttaaaatagtaataataaacctattaTTAATAGGTTTATTAACTGTTAATAATAAACCtaataataaaaaaat-taaataatatttttatttaaaatC-----t
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189194033 153 + 189454096 atatttatcataaaaaaacta------------caaactaacaa-tttaaaaatacttagtgatttattttaaaatagtaataataaacctattaTTAATAGGTTTATTAACTGTtaataataaacctaataataaaaaaat-taaataataTTTTTATTTAAAATC------
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178612859 154 + 178775436 atatttatcat-aaaaaacta------------caaactaacaa-tttaaaaatacttagtgatttattttaaaatagtaataataaacctattattaataggtttattaaatattaataataaacctaataataaaaaaat-taaataatatttttatttaaaatc----tt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135547969 117 + 135778131 atatttatcataaaaaaacta------------caaactaacaa-tttaaaaatacttggtgatttattttaaaatagtaataataaacctattac---------------atgtt-----------------------aat-taaatgatatctttatttaaaatC----tt
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190656777 121 - 190850796 atatttatcatagaagaaata------------caaactaacaa-tttaaaaacatttagtaatttattttaaaatagtaataataaacctattac---------------acata-----------------------aat-tacataacatttttatttaaaatctgtttt
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18102036 132 -  59632846 gtatttactatattaaaatcaaaattaatagttaaaactaataatttttgaaatacttattaattcagttt---ataacaataataagtttaatat---------------atatt-----------------------aacataagcaacatatttttatgaaaaatatctt
i canFam3.chr16            C 0 I 233
e mm10.chr8                 87805742 697 - 129401213 I
e ponAbe2.chr4             198211004 394 + 198332218 I

a score=3372.000000
s hg38.chr4_KI270925v1_alt    426219 2 +    555799 --tt
s panTro4.chr4             193137936 3 + 193495092 c-tt
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113883834 4 + 115148730 cttt
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183800790 2 + 184069350 --tt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189194186 2 + 189454096 --tt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178613013 2 + 178775436 --tt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135548086 2 + 135778131 --tt
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190656898 2 - 190850796 --ct
i calJac3.chr3             C 0 I 228
e mm10.chr8                 87805742 697 - 129401213 I
e canFam3.chr16             18102168 233 -  59632846 I
e ponAbe2.chr4             198211004 394 + 198332218 I

a score=135712.000000
s hg38.chr4_KI270925v1_alt    426221 75 +    555799 tttttttttcagatggagttttgctcttgttgcccaggctggagtgcaatggcccgatctcagctcacctcaacc
s panTro4.chr4             193137939 75 + 193495092 ttcttttttcagacggagttttgctcttgttgcccaggctggagtgcaatggcccgatctcagctcacctcaacc
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113883838 75 + 115148730 tttttttttcagacggagttttgctcttgttgcccaggctggagtgcaatggcccgatctcggctcaccgcaacc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183800792 75 + 184069350 tttttttttcagacggcgttttgctcttattgcccaggctggagtgcaatggcccaatctcggctcacggcaacc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189194188 75 + 189454096 tttttttttcagacggcgttttgctcttattgcccaggttggagtgcaatggcccaatctcggctcacggcaacc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178613015 75 + 178775436 tttttttttcagacggagttttgctcttgttgcccaggctggagtgcaatggcccaatctcggctcacggcaacc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135548088 75 + 135778131 tttttttttcagacggcgttttgctcttgttggccaggctggagtgcaatggcccgatctcggctcacggcaacc
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87805742 697 - 129401213 I
e canFam3.chr16             18102168 233 -  59632846 I
e calJac3.chr3             190656900 228 - 190850796 I
e ponAbe2.chr4             198211004 394 + 198332218 I

a score=290260.000000
s hg38.chr4_KI270925v1_alt    426296 125 +    555799 tccgcctcccgggttc-aagcgattctcctgccttagcctcccgagtagctgggattacaggcatc--------cgcccagctaatttttgtatttttagtagTAGCTAGTCTCCAAATGTGATCTGGAGAATA
s panTro4.chr4             193138014 125 + 193495092 tccgcctcccaggttc-aagcgattctcctgcctcagcctcctgagtagctgggattacaggcatg--------cgcccagctaatttttgtatttttagtagTAGCTAGTCTCCAAATGTGATCTGGAGAATA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198211398 126 + 198332218 tccgtctcccgggttcaaagcgattctcctgcctcagcctcctgagtagctgggattacaggcatg--------cgcccagataatttttgtatttttagtagTAGCTAGTCTCCAAATGTGATCTGGAGAATA
i ponAbe2.chr4             I 394 C 0
s nomLeu3.chr7b            113883913 133 + 115148730 tctgcctcccgggttc-aagagattctcctgcctcagcctcctgagtagctgggattacaggcatgcgccaccacgcccagataatttttgtatttttagtagTAGCTAGTGTCCAAATGTGATCTGGAGAATT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183800867 133 + 184069350 tccgcctcccgggttc-aggcgattctcctgcctcagcctcccgagtagctgggactacaggcacgtgccaccacgcctggctaatttttgtatttttagtagTAGCCAGTCTCCAAATGTGATCTGCAGAATT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189194263 133 + 189454096 tccgcctcccgggttc-aggcgattctcctgcctcagcctcccgagtagctgggactacaggcacgtgccaccacgcctggctaatttttgtatttttagtagTAGCCAGTCTCCAAATGTGATCTGCAGAATT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178613090 133 + 178775436 tccgcctcccgggttc-aggcgattctcctgcctcagcctcccaagtagctgggattacaggcacatgccaccacgcctggctaatttttgtatttttagtagtagccaGTCTCCAAATGTGATCTGCAGAATG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135548163 132 + 135778131 tccgcctcccgggttc-aggcgattctcctgcctcagcctcccgagtagctgggactacaagcacgtgccaccacacct-gctaatttttgtatttttagtagTAGCCAGTCTCCAAATGTGATCTGCAGAATT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87805742 697 - 129401213 I
e canFam3.chr16             18102168 233 -  59632846 I
e calJac3.chr3             190656900 228 - 190850796 I

a score=621184.000000
s hg38.chr4_KI270925v1_alt    426421 221 +    555799 AGACCACATTTGGAGACTGGTTAACCTACAATATGTGTAGACAACACAATCCCAAATTCTTAAGTGGATACA---ATTTT---CTCACTT---ATTTCTATTCTTTTCTTTTGCTCTTAAAATGCCTAGTGCCCAGGGTCTTCATTCCCCCTTCCGGTTGTGCA-AAACCCTTTCCCCACCGTGACACCAGTGTGGGACTGACCTGTCCGTAGTGCCACCCTTTCCCCGCC
s panTro4.chr4             193138139 221 + 193495092 AGACCACATTTGGAGACTGGTTAACCTACAATATGTATAGATGACACAATCCCAAATTCTTAAGTGGATACA---ATTTT---CTCACTT---ATTTCTATTCTTTTCTTTTGCTCTTAAAATGCCTAGTGCCCAGGGTCTTCATTCTCCCTTCCAGTTGTGCA-AAACCCTTTCCCCACTGTGACACCAGTGTGGGACCGACCTGTCCATAGTGCCACCCTTTCCCCACC
i panTro4.chr4             C 0 I 150
s ponAbe2.chr4             198211524 221 + 198332218 AGACCACATTTGGAGACTAGTTAACCTACAATATGTGTAGACAACACAATCCCAAATTCTTAAGTAGATACA---ATTTT---CTCACTT---ATTTCTATTCTTTTGTTTTGCTCTTAAAATGCCTAGTGCCCAGGGTCTTCATTCTCCCTTCCGGTTGTGCA-AAACCCTTTCCCCACCGTGACACCAGTGCGGGGCTGACCTGTCCGTAGTGCCACCCTTTCCCCGCC
i ponAbe2.chr4             C 0 I 50
s nomLeu3.chr7b            113884046 221 + 115148730 AGATCACATTTGGAGACTAGTTAACTTACAATATGTGTAGACAACACAATCCCAAATTCTAAAGTAGATACA---ATTTT---CTCACTT---ATTTCTATTCTTTTCTTTTGCTCTTAAAATGCCTAGTGCCCAGGGTCTTCATTCTCCCTTCCAGTTGCACA-AAACCCTGTCCCCACCGTGACACCAGTGTGGGGTCGACCTGTCCATAGTGCCACCCTTTCCCCACC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183801000 205 + 184069350 AGATCACATTTGGAGACTAGTTAACCTACAATATGTGTAGACAACACAATCCCAAATTCTAAAGTAGATACA---ACTTT---CTCATTT---ATTTCTATTCATTTCTTTTGCTCTTAAAACGCCTAGTGCCT-GGGTCTTCGTTCTCCCTTCCAGTTGCACA-GAACCCTTTCCCCACCGTGACACCAGTGCGGGGCTGACCTGTCCATAGTGC---------------
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189194396 205 + 189454096 AGATCACATTTGGAGACTAGTTAACCTACAATATGTGTAGACAACACAATCCCAAATTCTAAAGTAGATACA---ACTTT---CTCATTT---ATTTCTATTCATTTCTTTTGCTCTTAAAACGCCTAGTGCCT-GGGTCTTCGTTCTCCCTTCCAGTTGCACA-GAACCCTTTCCCCACCGTGACACCAGTGCGGGGCTGACCTGTCCATAGTGC---------------
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178613223 205 + 178775436 AGATCACATTTGGAGACTAGTTAACCTACAATATGTGTAGACAACACAATCCCAAATTCTAAAGTAGATAca---acttt---ctcattt---atttctattcatttcttttgctcTTAAAACGCCTAGTGCCT-GGGTCTTCGTTCTCCCTTCCAGTTGCACA-GAACCCTTTCCCCACTGTGACACCAGTGCGGGGCTGACCTGTCCATAGTGC---------------
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135548295 205 + 135778131 AGATCACATTTGGAGACTAGTTAACCTACAATATGTGTAGACAACACAATCCCAAATTCTAAAGTAGATACA---ACTTT---CTCATTT---ATTTCTATTCATTTCTTTTGCTCTTAAAACGCCTAGTGCCT-GGGTCTTCATTCTCCCTTCCAGTTGCACA-GAACCCTTTCCCCACCGTGACAGCAGTGCGGGGCCGACCTGTCCATAGTGC---------------
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190657128 185 - 190850796 agatcacattttgagaaTAGTTAACCTACAATATGTGTAGACAACACAATCCCAAATTCTAAAGTAGATATG---ATTTT---CTTATTT---ATTTCTGTTCATTTCTTTGGCTCTTCAAATGTCTGGCACCCAAGGTCTTCATTCTCCCTTCTGGTTGAGCG-AAACTCTTTCCCCACGGTGACACCATTGTG------------------------------------
i calJac3.chr3             I 228 C 0
s canFam3.chr16             18102401 181 -  59632846 aaaccacgctttgagaacagcCAACCTACAGTATGTAAGGATGGCCCAAAACCAAATTCTAAAATAAAAAAGTTTGCTTTCAGCTTACTTCAAATTCCTATCCCTTATTTTAGCACTTCAAATATCTGGTGTTCGGGGTCCTCATGCTCTCTTCTGGTTGCCCAGAAATCCTTATCCCACT--------------------------------------------------
i canFam3.chr16            I 233 C 0
e mm10.chr8                 87805742 697 - 129401213 I

a score=14915.000000
s hg38.chr4_KI270925v1_alt    426642 20 +    555799 ATGACACCAGAGTGGGGCCG
s panTro4.chr4             193138510 20 + 193495092 GTGACACCAGAGTGGGGCCG
i panTro4.chr4             I 150 C 0
s ponAbe2.chr4             198211795 20 + 198332218 GTGACACCAGAGTGGGGCCG
i ponAbe2.chr4             I 50 C 0
s nomLeu3.chr7b            113884267 20 + 115148730 GTGACACCAGAGTGGGGCCG
i nomLeu3.chr7b            C 0 I 135
s calJac3.chr3             190657313  6 - 190850796 --------------GGACTG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18102582 20 -  59632846 ATGACTCCAAGGTGGGGCTT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87805742 697 - 129401213 I
e chlSab2.chr7             135548500  0 + 135778131 C
e papAnu2.chr5             178613428  0 + 178775436 C
e macFas5.chr5             189194601  0 + 189454096 C
e rheMac3.chr5             183801205  0 + 184069350 C

a score=955.000000
s hg38.chr4_KI270925v1_alt    426662 4 +    555799 ACCT
s panTro4.chr4             193138530 4 + 193495092 ACCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198211815 4 + 198332218 ACCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113884422 4 + 115148730 ACCT
i nomLeu3.chr7b            I 135 C 0
s calJac3.chr3             190657319 2 - 190850796 --AA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18102602 4 -  59632846 TTCT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87805742 697 - 129401213 I
e chlSab2.chr7             135548500 0 + 135778131 C
e papAnu2.chr5             178613428 0 + 178775436 C
e macFas5.chr5             189194601 0 + 189454096 C
e rheMac3.chr5             183801205 0 + 184069350 C

a score=778519.000000
s hg38.chr4_KI270925v1_alt    426666 234 +    555799 GTCCGTAGTGTC-ACTTGTTCTCAGTGTGCTAATTTCTGTAAGTCAA-----AATATATCTATTTTCTGATGGTCCCCTGAGGATCCAAATAAGTAACATGCTAGTTTAATGAACTTGGCTGTTAATTGGTGATAATCATTTAATGGCTCCTCCATTCTTCATACAATATTGTATTTAAAC--AAATCTTCAGTGTCTCCACCCAGACAAATTACTTA-----TATGTAAATGTACCCAGT----------------------------------------------------------------GAGAGG
s panTro4.chr4             193138534 234 + 193495092 GTCCGTAGTGTC-ACTTGTTCTCAGGGTGCTAATTTCTGTAAGTCAA-----AATATATCCATTTTCTGATGGTCCCCTGAGGATCCAAATAAGTAACATGCTAGTTTAATGAACTTGGCTGTTAATTGGTGATAATCATTTAATGGCTCCTCCATTCTTCATACAATATTGTATTTAAAC--AAATCTTCAGTGTCTCCACCCAGATAAATTACTTA-----TATGTAAATGTACCCAGT----------------------------------------------------------------GAGAGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198211819 234 + 198332218 GTCCGTAGTGTC-ACTTGTTCTCAGTGTGGTAATTTCTGTAAGTCAA-----AATATATCCATTTTCTGATGGTCCCCTGAGGATTCAAATAAGTAACATGCTAGTTTAATGAACTTGGCTGTTAATTGGTGATAATCATTTAATGGCTCGTCCATTCTTCATACAATATTGTATTTAAAC--AAATCTTCAGTGTCTCCACCCAGATAAATTACTTA-----TATGTAAATGTACCCAGT----------------------------------------------------------------GAGAGG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113884426 234 + 115148730 GTCCGTAGTGCC-ACTTATTCTCAGTGTGATAATTTCTGTAAGTCAA-----AATATATCCATTTTCTGATGGTCCCCTGAGGATGCAAATAAGTAACATGCTAGTTTAATGAACTTGGCTGTTAACTGATGATAATCATTTAATGGCTTGTCCATTCTTCATACAATATTGTATTTAAAC--AAATCTTCAGTGTCTTCACCCAGATAAATTACTTA-----TATGTAAATGTACCCAGT----------------------------------------------------------------GAGAGG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183801205 218 + 184069350 -----------C-ACTTGTTCTTAGTGTGCTAATTTCTGTAAGTCAA-----AATAGATCCATTTTCTGATGGTCCCCTGAGGATCCAAATAAGTAACATGCTAGTTTAATGAACTTTGCTGTTAATTGGTGATAAGCATTTAATGGCTTGTCCATTCTTCATACA-----GTATTTAAGC--AAATCTTCAGAGTCTTCACCCAGATAAATTACTTA-----TATGTAAACATACCCAGT----------------------------------------------------------------GAGAGG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189194601 218 + 189454096 -----------C-ACTTGTTCTCAGTGTGCTAATTTCTGTAAGTCAA-----AATAGATCCATTTTCTGATGGTCCCCTGAGGATCCAAATAAGTAACATGCTAGTTTAATGAACTTTGCTGTTAATTGGTGATAAGCATTTAATGGCTTGTCCATTCTTCATACA-----GTATTTAAGC--AAATCTTCAGAGTCTTCACCCAGATAAATTACTTA-----TATGTAAACATACCCAGT----------------------------------------------------------------GAGAGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178613428 216 + 178775436 -----------C-ACTTGTTCTCAGTGTGCTAATTTCTGTAAGTCAA-----AATAGATCCATTTTCTGATGGTCCC--GAGGATCCAAATAAGTAACATGCTAGTTTAATGAACTTTGCTGTTAATTGGTGATAAGCATTTAATGGCTCGTCCATTCTTCATACG-----GTATTTAAGC--AAATCTTCAGAGTCTTCACCCAGATAAATTACTTA-----TATGTAAACGTACCCAGT----------------------------------------------------------------GAGAGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135548500 218 + 135778131 -----------C-ACTTGTTCTCAGTGTGCTAATTTCTGTAAGTCAA-----AATAGATCCATTTTCTGATGGTCCCCTGAGGATCCAAATAAGTAACATGCTAGTTTAATGAACTTTGCTGTTAACTGGTGATAAGCATTTAATGGTTCGTCCATTCTTCATACG-----GTATTTAAGC--AAATCTTCAGAGTCTTCACCCAGATAAATTACTTA-----TATGTAAACGTACCCAGT----------------------------------------------------------------GAGAGG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190657321 233 - 190850796 CTGGGTGGTGTC-ACTTGTTCTCAGGGTGCTAATTTCTTTAAGTCAA-----AATTTATCCATTTTCTGATGGTCCCCTGAGGATCCAAATAGGTGACATGCCAGTTTAATAAACTTCGCTATTAATTGGTGATAGTCATTTAATGGCTCATCCATTCTTTATACAATATTGTATTTAAAC--AAATCTTCAATGTCTTCA-CCAGGCAAATGACTGA-----TATGTAACCGTATCCAGT----------------------------------------------------------------GAGAAG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87806439 231 - 129401213 GTCCCCACTGCCAACGTGCTCTCTGT-------TCTCTGAAAATCAA-----AATTCATTCGTGTTCCAGTTACTCCTTGAGGGTCAAAGTACAGAACCCAATGTTTTGATGACTGGAATTGTTAATTGTCCATAATTAGTTGACACTTCATCCCTCTTCTACTCAATGTTGTGTGTAAAT---AGTCTTCAATGCCATCA-CAAAGTAATGGACTTAGACAGCATGTGACTCTGTCCAGG----------------------------------------------------------------AAGAAG
i mm10.chr8                I 697 C 0
s canFam3.chr16             18102606 305 -  59632846 TTTTATAGTAGC-CCATGTTCCCTACTTTCCAATTTCTTTAAGTCAAAATATAATATATCCATTCTCTGATTATTCCCTGAGGGTCCAAATGGGTAACATGCTAGTTTAATAAACTAACTTGTTAATTAGTGGTAATCATTTAATGGCTCAGCCACCCTTCATACAATATCATATTTAAACTCAGTGCTTCAGTGTCTTCACCCAAAGAAGTTACTTA-----TATGTGAGTATATCCAGTCAAAGTGTTTttttttttttttaagattttatttatttattcatgatagtcacacagagagagagagagg
i canFam3.chr16            C 0 I 138

a score=949358.000000
s hg38.chr4_KI270925v1_alt    426900 291 +    555799 ACTTTCGTGTCACTTTCCCCAGATGACAT---CTCTTCTCTCTGTGCAGAGTCCTGACCCTATGCACAAGTGTGCAATGAATATCGTCA--------------------------------------TGTATAATGCATATAT--------------------------------------------------AAGACATTT----------------GAATAAATGCTTAGATTATTTTGGATTCCTTAGTAAATGCCAGTTTTGATCATGAAAAGTAGACAGAACCTAGAC-----AAAAAAAAAAAAA----TACTGGCAGAAAAACCAAACAGCAACAATACTACAAACTCAGAT------------------GCACTGACATCT---GAG---TAACAATGA-TA--GCCTCAGTTCCTTAAAACCTCA
s panTro4.chr4             193138768 295 + 193495092 ACTTTTGTGTCACTTTCCCCAGATGACAC---CTCTTCTCTCTGTGCCGAGTCCTGACCCTATGCACAAGTGTGCAATGAATATCGTCA--------------------------------------TGTATAATGCATATAT--------------------------------------------------AAGACATTT----------------GAATAAATGCTTAGATTATTTTGGATTCCTTAGTAAATGCCAGTTTTGATCATGAAAAGTAGACAGAACCTAGAC-----AAAAAAAAAAAAAAAAATACTGGCAGAAAAACCAAACAGCAACAATACTACAAACTCAGAT------------------GCACTGACATCT---GAG---TAACAATGA-TA--GCCTCAGTTCCTTAAAACCTCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198212053 291 + 198332218 ACTTTCGTGTCACGTTCCCCAGATGACAT---CTCTTCTCTCTGCGCCGAGTCCTGACCCTATGCACAAGTGTACAATGAATATCGTCA--------------------------------------TGTATAATGCATATAT--------------------------------------------------AAGACATTT----------------GAATAAATGCTTAGATTATTTTGGATTCCTTAGTAAATGCCAGTTTTGATCATGAAAAGTAGGCAGAACCTAGAC-----AAAAAAAAAAAAA----TACTGGCAGAAAAACCAAACAGCAACAATACTACAAACTCAGAC------------------GCACTGACATCT---GAG---TAACAATGA-TA--GCCTCAGTTCCTTAAAACCTCA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113884660 296 + 115148730 GCTTTCATGTCACTTTCCCCAGATGACATCACCTCTTCTCTCTGCACCGAGTCCTGACCCTATGCACAAGTGTGCAATGAATATTGTCA--------------------------------------TGTATAATACATATAT--------------------------------------------------AAGGCATTT----------------GAATAAATGCTTAGGTTATTTTGGATTCCTTAGTAAATGCCAGTTTTGATCATGAAAAGTAGACAGAACCTAGAC-----AAAAAAAAAAAAA--GATACTGGCAGAAAAACCAAACAGCAACAATACTACAAACTCAGAT------------------GCACTGACATCT---GAG---TAACAATGA-TA--GCCTCAGTTCCTTAAAACCTCA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183801423 299 + 184069350 ACTTCCATGTTACTTTCCTCAGATGACATCACCTCTTCTCTCTTCGCCGAGTCCTGACCCTATGCATGGGTGTGCAATGAATATCGTCA--------------------------------------TGTATAATACAC--AT--------------------------------------------------AAGACATTT----------------GAATAAATGCTTAGATTATTTTGGATTCCTTAGTAAATGCCACTTTTGATCATGAAAAGTAGACAGAACCTAGAC--AAAAAAAAAAAAAAAAAAGATACTGGCAGAAAAACCAAACAGCAACAATGCTAAAAACTCAGAT------------------GTACTGACATCT---GAG---TAACAATGA-TC--GCCTCAGTTCCTTAAAACCTCA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189194819 296 + 189454096 ACTTCCATGTTACTTTCCTCAGATGACATCACCTCTTCTCTCTTCGCCGAGTCCTGACCCTATGCATGGGTGTGCAATGAATATCGTCA--------------------------------------TGTATAATACAC--AT--------------------------------------------------AAGACATTT----------------GAATAAATGCTTAGATTATTTTGGATTCCTTAGTAAATGCCACTTTTGATCATGAAAAGTAGACAGAACCTAGAC-----AAAAAAAAAAAAAAAGATACTGGCAGAAAAACCAAACAGCAACAATGCTAAAAACTCAGAT------------------GTACTGACATCT---GAG---TAACAATGA-TC--GCCTCAGTTCCTTAAAACCTCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178613644 301 + 178775436 ACTTTCATGTTACTTTCCTCAGATGACATCACCTCTTCTCTCTTCGCCGAGTCCTGACCCTATGCATGGGTGTGCAATGAATATCGTCA--------------------------------------TGTATAATACAC--AT--------------------------------------------------AAGACATTT----------------GAATAAATGCTTAGATTATTTTGGATTCCTTAGTAAATGCCACTTTTGATAATGAAAAGTAGACAGAAcctagaccaaaaaaaaaaaaaaaaaaagatactggcaGAAAAACCAAACAGCAACAATGCTAAAAACTCAGAT------------------GTACTGACATCT---GAG---TAACAATGA-TA--GCCTCAGTTCCTTAAAACCTCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135548718 303 + 135778131 ACTTTCATGTTACTTTCCTCAGATGACATCACCTCTTCTCTCTTCGCCGAGTCCTGACCCTATGCACGGGTGTGCAATGAATATCGTCA--------------------------------------TGTATAATACACATAT--------------------------------------------------AAGACATTT----------------GAATAAATGCTTAGATTATTTTGGATTCCTTAGTAAATGCCACTTTTGATCATGAAAAGTAGACAGAACCTAGACaaacaaaaaaaaaaaaaaaaGATACTGGCAGAAAAACCAAACAACAACAATGCTAAAAACTGAGAT------------------GCACTGACATCT---GAG---TAACAATGA-TA--GCCTCAGTTCCTTAAAACCTCA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190657554 312 - 190850796 GCTTTCATGTCAC-TTCTTCAGATGGTATTATCTCTTCTCTCTTTGCCTAGTACTGACCCTATGCACAAGTGTGCCATGAATATCGTCA--------------------------------------TGTATAATACATATGT--------------------------------------------------AAGACATTT----------------GAATAAATGCTAAGATTATTCTAGATTTCTTAGTAAAT-CCACTTTTGATCATGAAAAGTAGACAAAACCTAGAC-----AAAAAAACAAAAG---AGGCCAGCAG-AAAACAAAACAG---CAATACTACAAACTCAGATGCAGGAAGACACGTCACGGCACTGACATTCAAAGGG---CAACAACAA-TATCGCATCAGTTCCTTAAAACCTTA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87806670 398 - 129401213 GACTTTATGTCACTCTCCTTCAGACATATCATTTCTTCTCTCT--GCCTAGTACAAATTCTATGCACAAGTATGTA--GACTATTGTCAAGGGAGACATTCAAATACATGCTTACTCATCTGCTCACTATATTGTGCCCACATCACCTGCCCAGACCCAATTTGAACGGTCCAGAATGTACCGCTCATGAACAAAGAAATTCAGTTTTTAACTCTGAGGAGGAAATGCTTAGATGACTTCATATTCCTTACTACATGTCACTTTCTATCTT--AAAGTCAAAACAAATTAGGC-----AAAAAGCAAAAGA--AACATTTTCTAAAAAGCAGAAAACCAAAGA---CATAAACTCAAACATGGGA------------GGGAAGTTATTC---AAG---AAGGAATAATTA--GCAGCAGTTTCACAAAACCTTA
i mm10.chr8                C 0 I 8
s canFam3.chr16             18103049 305 -  59632846 GTTTTTGTGTCATTTTCCTCAGATAACATCACCTCTTCTCTCTTTGGTTAGTACTGA--CTGTGCATAAGTGGGCTGTGAATATTGTCA-------------------------------------------GATATATATGT--------------------------------------------------GAGATATTT----------------GAATAAATGCTTAGATTATTTTGCATCCCTTTGTAAGTGCCACTTTTAGTCATAGAAAGTGGACAAAAACTAGAT-----GAAAAGCAAAAGA----TACTAGCT-AAAAACAATAGAACAACAAAAATACAAATTCAGGTATAGGAAGAAATTCCATAGCTCTGACATAC---AAGGACTAAGAATAA-CA--GTGTCATTTAGT--AATTTTCA
i canFam3.chr16            I 138 C 0

a score=59745.000000
s hg38.chr4_KI270925v1_alt    427191 20 +    555799 ATATAGGCTTAAC----ttttttt
s panTro4.chr4             193139063 20 + 193495092 ATATAGGCTTAAC----ttttttt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198212344 20 + 198332218 ATATAGGCTTAAC----ttttttt
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113884956 20 + 115148730 AAATAGGCTTAAC----ttttttt
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183801722 20 + 184069350 ATACAGGCTTAAA----ttttttt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189195115 20 + 189454096 ATACAGGCTTAAC----ttttttt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178613945 24 + 178775436 ATACaggcttaacttttttttttt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135549021 20 + 135778131 ATACAGGCTTAAC----ttttttt
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190657866 20 - 190850796 ACATAGGCTTAAt----tttcttt
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18103354 14 -  59632846 ------ATTTAAC----TTCTTTT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87807068  8 - 129401213 I

a score=515161.000000
s hg38.chr4_KI270925v1_alt    427211 214 +    555799 ttt-------gagacagagttttgctttgttgtccacgctgggatgcagtggcgcaaatttggctcattgcaacctctgccttccaggttcaagcaattcttgtgcctcagcctcctgagtagct-ggattacaggcactcaccaccatgcccagctgattttttgtgttttagtggagacggggtttcatcatcttgcc-caggctggtctcgaactcctga
s panTro4.chr4             193139083 198 + 193495092 ttt---ttttgaaacagagttttgctttgttgtccacgctggg--------------------ctcactgcaacctctgccttccatgttcaagcaattcttgtgcctcagcctcctgagtagct-ggattacaggcactcgccaccatgcccagctgatttttcgtgttttagtggagacggggtttcatcatcttgcc-caggctggtcttgaactcctga
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198212364 143 + 198332218 ttttttttttgagacagagttttgctttgttgtccacgctggggtgcagtggcgcaaccttggctcac--------------------------------------------------------------------------------nnnnnnnnnnattttttgtgttttagtggagacggggtttcaccatcttgccgcaggctggtctctaactcctga
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113884976 219 + 115148730 ttt--tttttgagacagagttttgctttgttgtccatggtgggatgcagtggcacaaccttggctcactgcaacctctgcctcccgggttcaagcaattctcatgcctcagcctcctgagtagctgggattacaggcactcgccaccatgcccagctgattttttgtgttttagtaaagacggggtttcaccatcttgcc-caggctgg-ctcgaactcctga
i nomLeu3.chr7b            C 0 M 100
s rheMac3.chr5             183801742 219 + 184069350 ttt---tcttgagacatagttttgctttgttgtccatgctggggtgcagtggtgcgatcttggctcactgcaacctccacctccggagttcaagcaattctcgtgcctcagcctcctgagcagctgggattacaggcactcaccaccacgcccagctgattttttgtattttagtagagacggggtttcaccatcttgcc-caggctggtctcgaactcctga
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189195135 219 + 189454096 ttt---tcttgagacatagttttgctttgttgtccatgctggggtgcagtggtgcgatcttggctcactgcaacctccacctccggagttcaagcaattctcgtgcctcagcctcctgagcagctgggattacaggcactcaccaccacgcccagctgattttttgtattttagtagagacggggtttcaccatcttgcc-caggctggtctcgaactcctga
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178613969 219 + 178775436 ttt---ttttgagacagagttttgctttgttgtccatgctggggtgcagtggtgcgatcttggctcactgcaacctccgcctccggagttcaagcaattctcgtgcctcagtctcctgagcagctgggattacaggcactcaccaccacacccagctgattttttgtattttagtagagacggggtttcaccatcttgcc-caagctggtctcgaactcctga
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135549041 219 + 135778131 ttt---ttttgagacagagttttgctttgttgtccatgctggggtgcagtggtgcgatctcggctcactgcaaccttcgcctcccgagttcaagcaattctcgtgcctcagtctcctgagcagctgggattacaggcactcaccaccacgcccagctgattttttgtatttcagtagagacggggtttcaccatcttgcc-caggctggtctcgaactcctga
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190657886 216 - 190850796 ttt------tgagacaaagtttcgctttgctgtccaggctggggtgcagtcacctaatcttggcttactgcaacctccacctcccttgttcaagcaattcttgtgcctcagcctcctgagaagctgtgattacaggcactcgccccgacacccagctgattttttgtgttttagtagagatggggtttcaccatcttccc-taggctggtctcaaactcccga
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87807068   8 - 129401213 I
e canFam3.chr16             18103368   0 -  59632846 C

a score=97417.000000
s hg38.chr4_KI270925v1_alt    427425 45 +    555799 gctcagggaatccacctgtctcggcctcccagagtgttaggatta
s panTro4.chr4             193139281 45 + 193495092 gctcagggaatccacctgtctcagcctcccagagtgttaggatta
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198212507 45 + 198332218 gctcaggcaatccacctatctcagcctcccagagtgttaggatta
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183801961 45 + 184069350 gctcaggcaatccgcctgtcttgacctcccagagtgttaggatta
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189195354 45 + 189454096 gctcaggcaatccgcctgtcttgacctcccagagtgttaggatta
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178614188 45 + 178775436 gctcaggcaatccgcctgtcttgacctcccagagtgttaggatta
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135549260 45 + 135778131 gctcaggcaatctgcctgtcttgacctcccagagtgttaggatta
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190658102 41 - 190850796 gctc----aatcggcctgtcttggcttcccaaagtgctaggatga
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87807068  8 - 129401213 I
e canFam3.chr16             18103368  0 -  59632846 C
e nomLeu3.chr7b            113885195 100 + 115148730 M

a score=451766.000000
s hg38.chr4_KI270925v1_alt    427470 156 +    555799 caggcatgagccaccatgcccggccAACTTTTTTTAATAATCGAAAATTAATAGCATTTTTTggctgggcacagtggctcacacctgtaatcccagcactttgggaggccgaggcaggcagatcacttgagctcag------gagttcaagaccagcctgga
s panTro4.chr4             193139326 157 + 193495092 caggcatgagccaccatgcccggccAACTTTTTTTAATAATCGAAAATTAATAGCATTTTTTggctgggcacagtggctcacacctgtaatcccagcactttggggga---gggcaagcagatcacatcagttcagtaagtcaagttcaag-ccagc-tgga
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198212552 156 + 198332218 caggcatgagccaccgtgcccggccAACTTTTTTTAATAATCGAAAATTAATAGCATTTTTTggctgggcacagtggctcacacctgtaatcccagcactttgggaggccgaggcaggcagatcatttgagctcag------gagttcaagaccagcctgga
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113885299 156 + 115148730 CAGGCATGAGCCTCCATGCCCGACCAACTTTTTTTAATAATCGAAAATTAATAGCATTTTTTggctgggcacagtggttcacacctgtaatcctaccactttgggaggccgaggtgggcagctcacttgagctcag------gagttcaagaccagcctgga
i nomLeu3.chr7b            M 100 C 0
s rheMac3.chr5             183802006 156 + 184069350 caggcataagccaccacgcctggccAACTGTTTTTAACAATCGAAAATTGATAGCATTTTTTggctgggcacagtggctcacacctgcaatcacagcactttgggaggctgaggcgggcagatcccttgagctcag------gagttcaagaccagcctgga
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189195399 156 + 189454096 caggcataagccaccacgcctggccAACTGTTTTTAACAATCGAAAATTGATAGCATTTTTTggctgggcacagtggctcacacctgcaatcacagcactttgggaggctgaggcgggcagatcccttgagctcag------gagttcaagaccagcctgga
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178614233 156 + 178775436 caggcataagccaccatgcccggccaactgTTTTTAACAATCGAAAATTGATAgcattttttggctgggcacagtggctcacacctgcaatcacagcactttgggaggctgaggcgggcagatcccttgagctcag------gagttcaagaccagcctgga
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135549305 156 + 135778131 caggcataagccaccatgcccggccAACTGTTTTTAACAATCGAAAATTGATAGCATTTTTTggctgggcacagtggctcacacctgcaatcccagcactttgggaggctgaggcgggcagatcccttgagctcag------gagttcaagaccagcctgga
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190658143 156 - 190850796 cagacacgagccactgtgcctggccAACTTTTTTTAATAATCAAAAATTTATAGTATTTTTTggccaggcacagtggctcactcctgtaatcccagcactttgggaggccaaggcaagcagattgcttgagctcag------gagttcaagaccagcctgga
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87807068   8 - 129401213 I
e canFam3.chr16             18103368   0 -  59632846 C

a score=44168.000000
s hg38.chr4_KI270925v1_alt    427626 18 +    555799 caaca----tagcccccatctc
s panTro4.chr4             193139483 18 + 193495092 caaca----tagcccccatctc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198212708 18 + 198332218 caaca----tagcccccatctc
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113885455 22 + 115148730 caacatagctagcccccatctc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183802162 22 + 184069350 caacacagcgagcccccatctc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189195555 22 + 189454096 caacacagcgagcccccatctc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178614389 22 + 178775436 caacacagggagcccccatctc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135549461 22 + 135778131 caacacagtaagcccccatctc
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190658299 22 - 190850796 caatgtagtgagaccccatctc
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87807076 18 - 129401213 CAACC----TGGGTTATGTTTA
i mm10.chr8                I 8 C 0
e canFam3.chr16             18103368  0 -  59632846 C

a score=1512297.000000
s hg38.chr4_KI270925v1_alt    427644 430 +    555799 aaaaaataaaaTTAATGGCA-TTTAAAAAATATTTACAATAGAAGAGCTTTTAAAACTATAAGCAGATTCTGGGCATTGGTTGTG---------------AGCATCTTGTCCATCCAAAA----------------------AGAGCAGAAAATGGATCTGGGTTGACTTCACTGAGTCGCTTGAAACTCACAGAAAGATGACATGGAGCTACTGAGCCATGGTGTTAATGAGCATCACTTTCCACAGTTGCCTCTAGACAATGAGGCCAGATGCTCGTGGTGCAGGATGGGTAATTAATGCCTCCAGTTGTCCCGTGTTTCCTGAGGAAACAATGTTTAAGAACTGCCACAAACTGCGCCTCACAGATTGGAGTAGCTAAGGAAGAAAACC---TCAGAAGATTTTACGTCAC-TTTTTTTTTTT-GAAAAGACACAGACCAATCTATTTAGAAAAATATTTTT-------------ATTATATG
s panTro4.chr4             193139501 431 + 193495092 aaaaaataaaaTTAATGGCA-TTTAAAAATTATTTACAATAGAAGAGCTTTTAAAACTATAAGCAGATTCTGGGCATTGGTTGTG---------------AGCATCTTGTCCATCCAAAA----------------------AGAGCAGAAAATGGATCTGGGTTGACTTCACTGAGTCGCTTGAAACTCACAGAAAGATGACATGGAACTACTGAGCCATGGTGTTAATGAGCGTCACTTTCCACAGTTGCCTCTAGACAATGAGGCCAGATGCTCGTGGTGCAGGATGGGTAATTAATGCCTCCAGTTGTCCTGTGTTTCCTGAGGAAACAATGTTTAAGGACTGCCACAAACTGCGCCTCACAGATTGGAGTAGCTAAGGAAGAAAACC---TCAGAAGATTTTACATCAC-TTTTTTTTTTTTGAAAAGACACAGACCAATCTATTTAGAAAAATATTTTT-------------ATTATATG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198212726 429 + 198332218 aaaaaataaaaTTAATGGCA-TTTAAAAATTATTTACAATAGAAGAGCTTTTAAAACTATAAGCAGATTCTGGGCATTGGTTGTG---------------AGCATCTTGTCCATCCAAAA----------------------AGAGCAGGAAATGGATCTGGGTTGACTTCACTGAGTCGCTTGAAACTCACAGAAGGATGACATGGAGCTACTGAGTAATGGTGTTAATGAGCATCACTTTCCACAG-TGCCTCTAGACAATGAGGCCAGATGCTCATGGTGCAGGATGGGTAATTAATGCCTTGAGTTGTCCTGTGTTTCCTGAGGAAACAATGTTTAAGAACTGCCACAAACTGCACCTCACAGATTGGAGTAGCTAAGGAAGAAAACC---TCAGAAGATTTTACATCAC-TTTTTTTTTTG-GAAAAGACACAGACCAATCTATTTAGAAAAATATTTTT-------------ATTATATG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113885477 441 + 115148730 aaaaaataaaaTTAATGGCA-TTTAAAAATTATTTACAATAGAAGAGCTTTTAAAACTATAAGCAGATTCTGGGTATTGGTTGTGAGAACATACAATTTTAGCATCTTGTCCATCCAAAA----------------------AGAGCAGAAAATGGATCTGGGTTGACTTCACTGAGTTGCTTGAAACTCACAGAAAGATGACATGGAGCCACTGAGTTACGGTGTTAATAAGCATCACTCTCCACAG-TGTCTCTAGACAATGATGCCAGATTCTTGTGGTGCAGGGTGGGTAATTAATGCCTCCAGTTATCCTGTGTTTCCTGAGGAAACAATGTTCAAGAACTGCCACAAACTGCGCCTCGCAGATTGGAGTAGCTAAGGAAGAAAACC---TCAGAAGATTTTACATCAC-TTTTTTTT----GAAAAGATACAAACCAATCTATTTAGAAAAATATTTTT-------------ATTATATG
i nomLeu3.chr7b            C 0 I 1143
s rheMac3.chr5             183802184 441 + 184069350 aaaaaataaaaTTAAAGCAT-TTAAAAAATTATTTACCATATAAGAGCTCTTAAAATTATAAGCAGATTCTGGGTATTGGTTGTGAGAACATACAATTTTAGCATCTTGACCATCCAAAA----------------------AGAGCAGAAAACGGATCTGGGCTGACTTCACTGAGTCGCTTGGAACTCATAGAAAGATGACATGGAGCTACTGAGTTACGGTGTTAATGAGCATCACTTTCCACAG-TGCCTCTAGACAATAAGGCCAGATTCTCGGGGTGCAGGATGGGGAACTGATGCCTCCAGTTGTCCTGCGTTTCCCGAGGATACAATGCTTAAGAACTGCCACAAACTGCGCCTCACAGACTGGAGTAGCT----AAGAAAAGC---TCAGAAGATGTTATATCACTTTTTTTTTTTT-GAAAAAACACAAACCAATCTATTTAGAAAAATATTTCT-------------ATTATATG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189195577 440 + 189454096 aaaaaataaaaTTAAAGCAT-TTAAAAAATTATTTACCATATAAGAGCTCTTAAAATTATAAGCAGATTCTGGGTATTGGTTGTGAGAACATACAATTTTAGCATCTTGACCATCCAAAA----------------------AGAGCAGAAAACGGATCTGGGCTGACTTCACTGAGTCGCTTGGAACTCATAGAAAGATGACATGGAGCTACTGAGTTACGGTGTTAATGAGCATCACTTTCCACAG-TGCCTCTAGACAATAAGGCCAGATTCTCGGGGTGCAGGATGGGGAACTGATGCCTCCAGTTGTCCTGCGTTTCCCGAGGATACAATGCTTAAGAACTGCCACAAACTGCGCCTCACAGACTGGAGTAGCT----AAGAAAAGC---TCAGAAGATGTTATATCAC-TTTTTTTTTTT-GAAAAAACACAAACCAATCTATTTAGAAAAATATTTCT-------------ATTATATG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178614411 439 + 178775436 aaaaaataaaattaaagcat-ttaaaaaattgtttaccATATAAGAGCTCTTAAAATTATAAGCAGATTCTGGGTATTGGTTGTGAGAACATACAATTTTAGCATCTCGTCCATCCAAAA----------------------AGAGCAGAAAACGGATCTGGGCTGACTTCACTGAGTCGCTTGAAACTCACAGAAAGATGACATGGAGCTACTGAGTTACGGTGTTAATGAGCATCACTTTCCACAG-TGCCTCTAGACAATGAGGCCGGATTCTCGGGGTGCAGGATGGGGAACTGATGCCTCCAGTTGTCCTGTGTTTCCCGAGGATACAATGCTTAAGAACTGCCACAAACTGCGCCTCACAGACTGGAGTAGCT----AAGAAAACC---TCAGAAGATgttatatcac--tttttttttt-gaaaagacacaAACCAatctatttagaaaaatatttct-------------attatatg
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135549483 439 + 135778131 aaaaaataaaaTTAAAGCAT-TTAAAAAATTATTTACCATGTAAGAGCTCTTAAAATTATAAGCAGATTCTGGGTATTGGTTGTGAGAACATACAATTTTAGCATCTTGTCCATCCAAAA----------------------AGAGCAGAAAATGGATCTGGGCTGACTTCACTGAGTCACTTGAAACTCACAGAAAGATGACATGGAGCTACTGAGTTACGGTGTTAATGAGCATCACTTTCCACAG-TGCTTCTAGACAACGAGGCCGGATTCTCGGGGTGCAGGATGGGGAATTGATGCCTCCAGTTGTCCTGCGTTTCCCGAGGATACAATGCTTAAGAACTGCCACAAACTGCACCTCACAGACTGGAGTAGCT----AAGAAAACC---TCAGAAGATGTTATATCAC--TTTTTTTTTT-GAAAAGACACAAACCAATCTATTTAGAAAAATATTTCT-------------ATTATATG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190658321 444 - 190850796 aaaaaacaaaaGTAATGGCA-TTTAAAAATTATTTACACTATAAGAGCTCTTAAAACTGTAAGCAGAGTCTGGGTATTGGTTGTTAGAACATATACTTTTAGCATCTTGTACATCCAAAA-AGAGC----------------AGAGCAGAAAATGGATCTGGGTTGACTTCACTGAGTCGCTTGAAACTCACAAAAAGACAACA-GGAGCTACTGAGTCATGGTGTTAATGAGCATCACTTCATGCAG-TGCCTCTAGACAAGGAGGCCAGATTCTCACGGTGTAGGATGGGTAATTAACGCCTCCAGCTCTCTTGCGTTTCCAGAGAAAACAATGGTC-AGAACTGCCACGAATTGCACCTCACAGATTGGAGGAGCTAAGAAAGAAAATC---TCAGAAGATTTTACATCAC-TTTTTGTTTTG---AAAGATACAAACCAGCCTACTTAT-AAAATATTTTT-------------CTTATAGG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87807094 455 - 129401213 AGAATAAAAACTCAATAGCA-TTTTTAAAGCAT------TAAAAAAGTTCT----------ATCAAGGTCTGTATTTTGTTTGAGAGATAAAACAACTTAAATATCCCACCCATCTAAAACAAAGCAAACGAATAAATGAAAAGAGTAAAAAATGA--TTGGAGCAGTTTCCCTGAGCTGTTTGAAAGCAGCA-AAGGATAAAATTAAGCAACTGAGTTATGGTGTTAATGAGCATCAATTTGCACAT-CGCCTCAAGATAATGAGGCCACCTTGTTGTGGTGTATGATGGGTAATTAATGTGACCAATTATCAAGAATTTCCAGTGGAAAC--TGGTT---AACTGCCACAAGCTATGTTTTACAGATTGCAGGAACCAACAGTGAGCTCTCTGTCTGGAAACTTTACATTGC-TATCTTGC----AAGAAGACACAACCTATTCTATTTAGAAATATATTTTTATGGGAAATTCCCATTACATG
i mm10.chr8                C 0 C 0
s canFam3.chr16             18103368 446 -  59632846 AAGAGTAAAAATCAATAGCatttttaaaattatttataatataaGAGTTCTTAAAATTATAAGCACGATACAACTACTGATTGAGAGACTGTACTACTTTCACATCTCATCTATCCAAAA----------------------AGAGGAGAAAATAGATCTGGGCTGGTTTCACAGAGTCATCTGAAACCCACAAAAAGATAAAATTGAGCTATTGACTTATGGTGTTAATGAGCATCCATTCACACAT-CGCCTCAAGATAATGAGGCTACATTCTCAGGGTGTAGGATGGGTAATTAATGCTTCCAATTACCATGAATTTTCAGAGGAAACAATGGTTAGGAACTGCCACAAGCTATGCTTTACAGTTTGGAATAGCCAAGGGAGAAAAACCTCTCAGAGAATTTTATATTGC-TTTCTGTGCTG---GAAGACACAAGCCAAGCTATTTAGAAAAATATTTTT-------------ATTACGTG
i canFam3.chr16            C 0 C 0

a score=8786361.000000
s hg38.chr4_KI270925v1_alt    428074 2238 +    555799  
s panTro4.chr4             193139932 2235 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198213155 2237 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113887061 2234 + 115148730  
i nomLeu3.chr7b            I 1143 C 0
s rheMac3.chr5             183802625 2233 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189196017 2233 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178614850 2236 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135549922 2240 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190658765 2301 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87807549 2256 - 129401213  
i mm10.chr8                C 0 C 0
s canFam3.chr16             18103814 2316 -  59632846  
i canFam3.chr16            C 0 I 220

a score=1023095.000000
s hg38.chr4_KI270925v1_alt    430312 344 +    555799  
s panTro4.chr4             193142167 344 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198215392 343 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113889295 333 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183804858 348 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189198250 348 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178617086 348 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135552162 348 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190661066 346 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87809805 512 - 129401213  
i mm10.chr8                C 0 C 0
s canFam3.chr16             18106350 379 -  59632846  
i canFam3.chr16            I 220 I 5501

a score=650434.000000
s hg38.chr4_KI270925v1_alt    430656 230 +    555799 ATGGTTATGTtgaaaag-ggaagatgaagtgaaac--tgga-tcctggatgctgagg-ccctccttcgaccccagcaatcttcttccctttagttcccagatcattgctagacgttcaccctctgcagaagattgtaagg-ttttctctgaggactctg--ttccgcccaagagaaga-gacaaaagtcactaacatcaaggattccccag----------------------------------------tacaaccagtataaccagtataaccatc
s panTro4.chr4             193142511 232 + 193495092 ATGGTTAtgctgaaaag-ggaagatgaagtgaaactttgga-tcctggatgctgagg-ccctccttcgaccccagcaatcttcttccctttagtacccagatcattgctagacattcaccctctgcagaagattgtaagg-ttttctctgaggactctg--ttccgcccaagagaaga-gacaaaagtcactaacatcaaggattccccaG----------------------------------------TACAACCAGTATAACCGGTATAACcatc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198215735 232 + 198332218 atggttatgttgaaaag-ggaagatgaagtgaaactttaga-tcctggatgctgagg-ccctccttcgaccccagcaatcttcttccctttagttcccagatcattgctagatgttcaccctctgcagaagattgtaagg-ttttctctgaggactctg--ttccgcccaagagaaga-gacaaaagtcactaacatcaaggattccccag----------------------------------------tacaaccagtataaccggtataaccatc
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113889628 273 + 115148730 ATGGTTATGTtgaaaag-ggaagatgatgtgaaactttgga-tcctggatgctaaggcccctccttcacccccagcaatcttcttccctttagttcccagatcattgctagactttcaccctctgcagaagattgtaagg-ttttctctggggactctg--ttctgcccaggagaaga-gacaaaagtcactaacatcaaggattccccaGTACAACCAGCATAACCGGTATAACCATCAAGGATTCCCCATACAACCAGTATAACCGGTATAACcatc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183805206 233 + 184069350 ATGGTTATGTtgaaaag-agaagatgaagtgaaactttgga-tcctggaggctaaggcccctccttcaaccccagtaatcttcttccccttagttcccagatcattgctagaccttcaccctctgcagaagattgtaagg-ttttctctgaggactccg--ttcgacccaagagaaga-gacaaaagtcactagcatcaaggattccccag----------------------------------------tacaaccagtataaccagtataaccaTC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189198598 233 + 189454096 ATGGTTATGTtgaaaag-ggaagatgaagtgaaactttgga-tcctggaggctaaggcccctccttcaaccccagtaatcttcttccccttagttcccagatcattgctagaccttcaccctctgcagaagattgtaagg-ttttctctgaggactctg--ttcgacccaagagaaga-gacaaaagtcactagcatcaaggattccccag----------------------------------------tacaaccagtataaccagtataaccaTC
i macFas5.chr5             C 0 I 305
s papAnu2.chr5             178617434 233 + 178775436 ATGGTTATGTTGAAAAG-GGAAGATGAAGTGAAACTTTGGA-TCCTGGAGGCTAAGGCTCCTCCTCCAACCCCAGTAATCTTCTTCCCCTTAGTTCCCAGATCATTGCTAGACCTTCACCCTCTGCAGAAGATTGTAAGG-TATTCTCTGAGGACTCTG--TTCCACACAAGAGAAGA-GACAAAAGTCACTAGCATCAAGGAGTCCccag----------------------------------------tacaaccagtataaccagtataaccaTC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135552510 233 + 135778131 ATGGTTATGTtgaaaag-ggaagatgaagtgaaactttgga-tcctggaggctaaggcccctccttcaaccccagtaatcttcttccccttagttcccagatcattgctagaccttcaccctctgcagaagattgtaagg-ttttctctgaggactctg--ttccacccaacagaaga-gacaaaagtcactagcatcaaggattccccag----------------------------------------tacaaccagtataaccagtataaccatc
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190661412 191 - 190850796 acggccatgatgcaaag--gaagatgaaatgaaactgcc-a-tcctggatgctgagggccctcatccgaccccagcaatcttcttccccttagttcctacatcgttactacagcttcaccctct---gaagattgtcaggcttttctctgatgactctg--ctccacccaagagagga-gacaaaagttactaacatcagg------------------------------------------------------------------------------
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87810317 178 - 129401213 gaggccataatgaaaagcagagcaggaagtaaaacttttgagtcctgagttctaaga--------------ccggtaatcttctccccttgagttcc-acatca----tggaccttca-cctcttcagaagattggagggcttttctccaagcactctgacttgctcccagtaaaagctgatgaaagttactcatgac---------------------------------------------------------------------------------
i mm10.chr8                C 0 C 0
e canFam3.chr16             18106729 5501 -  59632846 I

a score=52391.000000
s hg38.chr4_KI270925v1_alt    430886 17 +    555799 aaggattccccagtaca
s panTro4.chr4             193142743 17 + 193495092 gagggttccccagtaca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198215967 17 + 198332218 aaggattccccagtaca
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113889901 17 + 115148730 aaggattccccagtaca
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183805439 17 + 184069350 AAGAATTCCCTAGTACA
i rheMac3.chr5             C 0 I 304
s macFas5.chr5             189199136 17 + 189454096 aagaattccctagtaca
i macFas5.chr5             I 305 C 0
s papAnu2.chr5             178617667 17 + 178775436 AAGAATTCCCTAGTACA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135552743 17 + 135778131 aagaattccctagtaca
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190661603 14 - 190850796 ---aagtccctagtaca
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87810495 16 - 129401213 -aggttttcccaatgca
i mm10.chr8                C 0 C 0
e canFam3.chr16             18106729 5501 -  59632846 I

a score=236448.000000
s hg38.chr4_KI270925v1_alt    430903 74 +    555799 atggctcaaccagatcatcctacatcagagcccatatagcaacccacaaatgtgctcagggcttccaatcagct
s panTro4.chr4             193142760 74 + 193495092 atggctcaaccagatcatcctacatcagagcccatatagcaacccacaaatgtgctcagggcttccaatcagct
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198215984 74 + 198332218 atggctcaaccagatcatcctacatcagagcccatacagcaacccacaaatgtgctcagggcttccaatcagct
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113889918 74 + 115148730 atggctcaaccagatcatcctacatcagagctgatacagcaacccacaaatgtgctcggggcttccaatcagct
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183805760 74 + 184069350 atggctcaaccagatcatcctacatcagagccaaaacagcaacccacaaatgtgctcagggcgtccaatcagct
i rheMac3.chr5             I 304 C 0
s macFas5.chr5             189199153 74 + 189454096 atggctcaaccagatcatcctacatcagagccaaaacagcaacccacaaatgtgctcagggcgtccaatcagct
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178617684 74 + 178775436 ATGGCTCAACCAGATCATCCTACATCAGAGCCAAAACAGCAACCCACAAATGTGCTCAGGGCGTCCAATCAGCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135552760 74 + 135778131 atggctcaaccagatcatcctacatcagagccaaaacagcaacccacaaatgtgctcagggcttccaatcagct
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190661617 73 - 190850796 atggctctacaagatcaaccta-actagagccaatgccacagcccacaaatgtgcacagggcttccaatcagct
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87810511 62 - 129401213 tcggctcaatgatatcactctatgtgagagccAAATCAGAAATCCGT------------GGCTTCCAACAAACt
i mm10.chr8                C 0 I 1304
e canFam3.chr16             18106729 5501 -  59632846 I

a score=3647416.000000
s hg38.chr4_KI270925v1_alt    430977 1288 +    555799  
s panTro4.chr4             193142834 1285 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198216058 1255 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113889992 1287 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183805834 1289 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189199227 1291 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178617758 1256 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135552834 1289 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190661690 1295 - 190850796  
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87810573 1304 - 129401213 I
e canFam3.chr16             18106729 5501 -  59632846 I

a score=864322.000000
s hg38.chr4_KI270925v1_alt    432265 330 +    555799 gcacgctattttaaaatatagaggcaaacacc----aaaaaaaagaaaaaaaaggcagtaaagtttaaagctattatatttcctctggaaaagatgtaat-gg-aagaggaggatagcagattactattctgcaca-----acagaccctatggaattatttaattcttcacactatacatatgcaacttt----------aaa-------aaaaaaaag---aATTAAAACTAAATGGAGGTCAGAAGAAAAAGGGTAAGGAAGAGAAGAAAGGGAGAGAAGGAGGAAGAAGATAGGGAGGGAGACTTAGTTG-AAAAAAAATTAAACTGGCTCAAATAAAAATGGTAGGGCACAGACAGC
s panTro4.chr4             193144119 332 + 193495092 gcacgctattttaaaatatagaggcaaacacc--aaaaaaaaaagaaaaaaaaggcagtaaagtttaaagctattatatttcctctggaaaagacgtaat-gg-aggaggaggatagcagattattattctgcaca-----acagaccctatggaattatttaattcttcacactgtacatatgcaacttt----------aaa-------aaaaaaaag---aATTAAAACTAAATGGAGGTCagaagaaaaagggtaaggaagagaagaaagggagagaaggaggaagaagatagggagggagaCTTAGCTG-AAAAAAAATTAAACTGGCTCAAATAAAAATGGTAGGGCACAGACAGC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198217313 339 + 198332218 gcatgctattttaaaatatagaggcaaacagc-----aaaaaaaaaaaaaaaaggcagtaaagtttaaagctattatatttcctctagaaaagacgtaat-gg-aggaggaggatagcagattattattctgcaca-----acagaccctacggaattatttaattcttcacactatacatatgcaactttTTTTTTTTTAaaa-------aaaaagaag---aattaaaactaaatggaggtcagaagaaaaagggtaaggaagagaaggaagggagagaaggaggaagaagatagggagggagaCTTAGTTG-AAAAAAAATTAAACTGGCTCAAATAAAAATGGTAGGGCACAGACAGC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113891279 313 + 115148730 gcatgctattttaaaatatagaggca-------------------aaaaaaaaggcagtaaagtgtaaagctattatatttcctctggaaaagacataatagg-aggaggaggatagcagattattattctgcaca-----acagaccctacggaattatttaattcttcacactatacatatgcaacttt------------a-------aaaaaaaAG---AATTAAAGCTAAATGGAGATCAGAAGAAAATGGGTaaggaagagaaggaagggagagaaggaggaagaagatagggagggagACTAAGTTG--AAAAAAATTAAACTGGCTCAAATGAAAATGGTAGGGCACAGAGAGC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183807123 323 + 184069350 gcatgctattttaaaatatagaggcaaaaacc---------aaaaaaaaaaaagacagtaaagtttaaagctattatattttctctggaaaagaggtaat-ag-gaggaggggatggcggatgattattttgtaca-----atagaccctatggaattatttaattcttcacactatACA-ATGCAACTT-----------AAA-------AAAAAGAAGAATAATTAAAACTAAATggaggtaacaagaaaaagagtaaggaagagtaggaagggagagaagaag---gaagatagggagggagACTTACTTG-AGAAATTATTAAACTGGCTCAAAGAAAAATGGTCAGGCACAGAGAGC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189200518 323 + 189454096 gcatgctattttaaaatatagaggcaaaaacc---------aaaaaaaaaaaagacagtaaagtttaaagctattatattttctctggaaaagaggtaat-ag-gaggaggggatggcggatgattattttgtaca-----atagaccctatggaattatttaattcttcacactatACA-ATGCAACTT-----------AAA-------AAAAAGAAGAATAATTAAAACTAAATGGAGGTAACAAGAAAAAGagtaaggaagagtaggaagggagagaagaag---gaagatagggagggagACTTACTTG-AGAAATTATTAAACTGGCTCAAAGAAAAATGGTCAGGCACAGAGAGC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178619014 320 + 178775436 gtatgctattttaaaatatagaggcaaaaacc-------------aaaaaaaagacagtaaagtTTAAAGCTATTATATTTTCTCTGGAAAAGAGGTAAT-AG-GAGGAGGGGATGGCGGATGATTATTTTGCACA-----ATAGACCCTATGGAATTATTTAATCCTTCACACTATACa-atgcaactta----------aaa-------aaaaagaagaagaattaaaactaaatggaggtaacaagaaaaagagtaaggaagagtaggaagggagagaaggag---gaagatagggagggagaCTTACTTG-AGAAATTATTAAACTGGCTCAAAGAAAAATGGTCAGGCACAGAGAGC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135554123 322 + 135778131 gcatgctattttaaaatatagagtcaaaaacc-----------aaaaaaaaaagacagtaaagtttaaagctattatattttctctggaaaagaggtaat-ag-gaggaggggatggcggatgactgttttgcaca-----atagaccctatggaattatttaattcttcacactataca-atgcaactta----------aaa-------aaaaagaagaAGAATTAAAACTAAATGGAGGTAACAAGAAAAAGAGTAAGGAAGAGTAAGAAGGGAGAGAAGGAG---GAAGATAGGGAGGGAGACTTACTTG-AGAAATAATTAAACTGGCTCAAAGAAAAATGGTCGGGCACAGAGAGC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190662985 332 - 190850796 gcactccattttaaaatatagaggcaaatact--------------gaaaaaaggccatgaagtttaaatctattatatttcctctggaaaagaggaaat-agcaggagggggttaggagattattgttttacacaagaccacagaccctacagaattatttaattcttcacattatacacatgcaacttt----------gGGTTTTTTTTAATAGAAG---AATTAAA-CTAAAGGGGGATCAGCAGAAAAGGGGTAAGGAAGAGAAGGAAGGGAGGGAAGGAGGAAGACGATAGAGAGGGAGACTTAGTTGAAAAAAAAATCAAATTGGTTCAAATAAAAATGG-AAGGCACAGAGAGC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87811877 292 - 129401213 GCCTGCTATTTTAAAATCCAGTAACAAATACCTACACTCACCAAAAAGAAAAAGTGATAAAAGTTTAAAGGATCCACTTCT------------AGGTAAG-AG-GAGAAGC-GATAGCCAAGTGCTGACTTTTATA-----ACATACCTTACAGAG-TATTTAATCTTCCCAACTCCTCA----TAACTTT----------GTC-------CTGAAA------AATGAAAAGTAGAGGGAGATAATAAAAGAGAGAGCAAGGAACACAGACAAGAAAGA----------------AGGGAAGAAAAC-----TA-AAATAAAATCAACTTGGCTCAAATAAAAATGGTAGGGCACAGATTGC
i mm10.chr8                I 1304 I 898
e canFam3.chr16             18106729 5501 -  59632846 I

a score=48210.000000
s hg38.chr4_KI270925v1_alt    432595 75 +    555799 AG-AATGTGGAGCCACCT-----CAGCTTCCAGAGCCCGCCTCGCTGCAGCTTCCAGAGCCCGCCTCCCTGCAGC----------TTCCAG
s panTro4.chr4             193144451 75 + 193495092 AG-AACGTGGAGCCACCT-----CAGCTTCCAGAGCCCGCCTCCCTGCAGCTTCCAGAGCCCGCCTCGCTGCAGC----------TTCCAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198217652 62 + 198332218 AG-AATGTGGAGCCACCT-----AAGCTTCCAGAGCCCGCCTCGCTGCAGCTTCGAGAGCCCGCCTCA-----------------------
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113891592 90 + 115148730 AG-AATGTGGAGCCACCTCAGCCCAGCTTCCAGAGCCAGCCTCGCTGCAGCTTCCAGAGCCCGCCTCACTGCTCCCTGGCCCTCTCTCCAT
i nomLeu3.chr7b            C 0 I 156
s rheMac3.chr5             183807446 33 + 184069350 AGAAATGTGGAGCCACCT-----CAGCCT-------------------AGCTTCCAG----------------------------------
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189200841 33 + 189454096 AGAAATGTGGAGCCACCT-----CAGCCT-------------------AGCTTCCAG----------------------------------
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178619334 33 + 178775436 AGAAATGTGGAGCCACCT-----CAGCCT-------------------AGCTTCCAG----------------------------------
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135554445 33 + 135778131 AGAAATGTGGAGCCACCT-----CAGCCT-------------------AGCTTCCAG----------------------------------
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190663317 33 - 190850796 AAAAATGTAGAGCTGCCC-----CAACCC-------------------AGATTCCAC----------------------------------
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87812169 898 - 129401213 I
e canFam3.chr16             18106729 5501 -  59632846 I

a score=23486.000000
s hg38.chr4_KI270925v1_alt    432670 11 +    555799 AGTCCGCCTCA
s panTro4.chr4             193144526 11 + 193495092 AGCCCGCCTCG
i panTro4.chr4             C 0 I 192
s nomLeu3.chr7b            113891838 11 + 115148730 AGCCCGCCTCA
i nomLeu3.chr7b            I 156 C 0
s rheMac3.chr5             183807479 11 + 184069350 AGCCCGCCTCA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189200874 11 + 189454096 AGCCCGCCTCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178619367 11 + 178775436 AGCCCACCTCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135554478 11 + 135778131 AGCCCGCCTCA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190663350 11 - 190850796 AGCCTGCCCAG
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87812169 898 - 129401213 I
e canFam3.chr16             18106729 5501 -  59632846 I
e ponAbe2.chr4             198217714  0 + 198332218 C

a score=168664.000000
s hg38.chr4_KI270925v1_alt    432681 58 +    555799 CTGCTCCCTGGCCCTCTCTCCTGCTGGCTGGCCACATGCACCAAAACTTGCTGTTCAA
s panTro4.chr4             193144729 58 + 193495092 CTGCTCCCTGGCCCTCTCTCCTGCTGGCTGGCCACATGCACCAAAACTTGCTGTTCAA
i panTro4.chr4             I 192 C 0
s ponAbe2.chr4             198217714 58 + 198332218 CTGCTCCCTGGCCCTCTCTCTTGCTGGCTGGCCACATGCACCAAAACCTGCTGTTCAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113891849 58 + 115148730 CTGCTCCCTGGCCCTCTCTCCTGCTGGCTGGCCACATGCACCAAAACCTGCTGTTCAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183807490 54 + 184069350 CTGCTCCCTAGCCCTCTCTCCT----GCTGGCCACATGCACCAAAACCTGCTGTTCAA
i rheMac3.chr5             C 0 I 344
s macFas5.chr5             189200885 54 + 189454096 CTGCTCCCTAGCCCTCTCTCCT----GCTGGCCACATGCACCAAAACCTGCTGTTCAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178619378 54 + 178775436 CTGCTCCCTGGCCCTCTCTCCT----GCTGGCCACATGCACCAAAACCTGCTGTTCAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135554489 54 + 135778131 CTGCTCCCTGGCCCTCTCTCCT----GCTGGCCACATGCACCAAAACCTGCTGTTCAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190663361 58 - 190850796 CTGCTCCAGGGCCCTCTCTCCTGTGGGCTGGCCACATGCACCAAAACCTGCTGATCAG
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87812169 898 - 129401213 I
e canFam3.chr16             18106729 5501 -  59632846 I

a score=29104.000000
s hg38.chr4_KI270925v1_alt    432739 14 +    555799 CGGGATATGCTCAT
s panTro4.chr4             193144787 14 + 193495092 CGGAATATGCTCAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198217772 14 + 198332218 CTGAATATGCTCAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113891907 14 + 115148730 CTGAATATGCTCAT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189200939 14 + 189454096 CTGAATGTGCTCAT
i macFas5.chr5             C 0 I 323
s papAnu2.chr5             178619432 14 + 178775436 CTGAATGTGCTCAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135554543 14 + 135778131 CTGAATGTGCTCAT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190663419 14 - 190850796 CTGAGTGTACCCAT
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87812169 898 - 129401213 I
e canFam3.chr16             18106729 5501 -  59632846 I
e rheMac3.chr5             183807544 344 + 184069350 I

a score=7232.000000
s hg38.chr4_KI270925v1_alt    432753 6 +    555799 AGCTAT
s panTro4.chr4             193144801 6 + 193495092 AGATAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198217786 6 + 198332218 AGCCAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113891921 6 + 115148730 AGCCAT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189201276 6 + 189454096 aGCCAC
i macFas5.chr5             I 323 C 0
s papAnu2.chr5             178619446 6 + 178775436 TGCCAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135554557 6 + 135778131 TGCCAC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190663433 6 - 190850796 AGGCAC
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87812169 898 - 129401213 I
e canFam3.chr16             18106729 5501 -  59632846 I
e rheMac3.chr5             183807544 344 + 184069350 I

a score=70531.000000
s hg38.chr4_KI270925v1_alt    432759 23 +    555799 GGTTTCCAGCAGTCTCTCCTGCC
s panTro4.chr4             193144807 23 + 193495092 GGTTTCCAGCAATCTCTCCTGCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198217792 23 + 198332218 GGTTTCCAGCAATCTCTCCTGCC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113891927 23 + 115148730 GGTTTCCAGCAATCTCTCCTATC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183807888 23 + 184069350 GGTCTCCAGCAATCTCTCCTGCC
i rheMac3.chr5             I 344 C 0
s macFas5.chr5             189201282 23 + 189454096 GGTCTCCAGCAATCTCTCCTGCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178619452 23 + 178775436 GGTCTCCAGCAATCTCTCCTGCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135554563 23 + 135778131 GGTCTCTAGCAATCTCTCCTGCC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190663439 23 - 190850796 GGTTTCCAGCAGTCTGTCCTGCC
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87812169 898 - 129401213 I
e canFam3.chr16             18106729 5501 -  59632846 I

a score=147038.000000
s hg38.chr4_KI270925v1_alt    432782 49 +    555799 CTCAGCTAAGCCTGGTCCTGGCAACTCCCCACCACACCCCACTGTGCCC
s panTro4.chr4             193144830 49 + 193495092 CTCAGCTAAGCCTGGTCCTGGCAACTCCCCACCACACACCCAGGTGCTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198217815 49 + 198332218 CTCAGCTAAGCCTGGTCCTGGCAACTCCCCACCCCACCCCAGTGTGCCC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113891950 49 + 115148730 CCCAGCTAAGCCTGGTCCTGGCAACTCCCCACCCCACCCCACTGTGTCT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183807911 49 + 184069350 CTCAGCTAAGCCTGGTCCTGGCAACTCCCCACCCCACCCCACTGTGTCC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189201305 49 + 189454096 CTCAGCTAAGCCTGGTCCTGGCAACTCCCCACCCCACCCCACTGTGTCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178619475 49 + 178775436 CTCAGCTAAGCCTGGTCCTGGcaactccccaccccaccccactgtgTCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135554586 49 + 135778131 CTCAGCTAAGCCTGGTCCTGGCAACTCCCCACCCCACCCCACTGTGTCC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190663462 31 - 190850796 CTCAGCCA------------------CCCCGCCGCACCCCACTGTGTCT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18112230 48 -  59632846 ctcaGTTAAGCTGGGTCCTGGCAACT-CCCACACAAACTCAATGTGTAT
i canFam3.chr16            I 5501 C 0
e mm10.chr8                 87812169 898 - 129401213 I

a score=1886265.000000
s hg38.chr4_KI270925v1_alt    432831 563 +    555799  
s panTro4.chr4             193144879 563 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198217864 562 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113891999 562 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183807960 564 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189201354 564 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178619524 564 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135554635 564 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190663493 563 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87813067 537 - 129401213  
i mm10.chr8                I 898 I 530
s canFam3.chr16             18112278 515 -  59632846  
i canFam3.chr16            C 0 C 0

a score=99581.000000
s hg38.chr4_KI270925v1_alt    433394 35 +    555799 ACATTGAATCA-----------AA------TATCTTATTAACATATGCAGAC
s panTro4.chr4             193145442 35 + 193495092 ACATTGAATCA-----------AA------TATCTTATTAAAATATGCAGAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198218426 35 + 198332218 ACATTGAATCA-----------AA------TATCTTATTAAAATATGTGGAC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113892561 52 + 115148730 ACATTGAATCATTTGATTCAATAAGATATTTATCTTATTAAAATATGCCGAC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183808524 35 + 184069350 ATATTGAATCA-----------AA------TATCTTATTAAAATATGCAGAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189201918 35 + 189454096 ATATTGAATCA-----------AA------TATCTTATTAAAATATGCAGAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178620088 35 + 178775436 ATATTGAATCa-----------aa------tatcttattaaaatatGCAGAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135555199 35 + 135778131 ATATTGAATCA-----------AA------TATCTTATTAAAATATGCAGAC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190664056 35 - 190850796 ACTTTGAATCA-----------AA------CGTCTTATTAAAATATGAAGAC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18112793 23 -  59632846 -----------------------A------TATCTTATCAAAATATGAAAAT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87813604 530 - 129401213 I

a score=1508530.000000
s hg38.chr4_KI270925v1_alt    433429 455 +    555799 AAAACTATGGGCCCAACTGAAATAATTTCTCATTTGCCATGCTATAAGTTCA-CTT-GTGCACCTAACAGAGAGAGTCTA---CATTAGACAGGATGCCAGGTGTGGTATCTGCAGAACAATTGGACCTTAATCTCCCCATTGTCAGACTGACTGATTGCATCATATCCAGGTCCCATCACATAGTTACTGGGCTCACCAATACCACTATTGATAGTCAAATCTCCCTCCTGTAGTCAACCTGAGAAAAATCT-ATTAAGT-GAGACACAGGAAAATCCCTAGACACACCTTACAAGGACTAAGA--GTCCTCATAGCATGAGCTGATAAATGAGGAAGCCTAGGAAAGTTCTAGCAAGTGGGGAATCCAATGAGACTGTACAGCTAAGGAGTGTGACCTACCTGCCTTGGAAAATCAGAA-AAGATTGCCTCAGAAAAGTCCTTTAGCTTTCCATAGACTTAAA
s panTro4.chr4             193145477 455 + 193495092 AAAACTATGGGCCCAACTGAAATAATTTCTCATTTGCCATGCTATAAGTTCA-CTT-GTGCACCTAACATAGAGAGTCTA---CATTAGACAGGATGCCAGGTGTGGTATCTGCAGAACAATTGGACCTTAATCTCCCCATTGTCAGACTGACTGATTGCATCATATCCAGGTCCCATCACATAGTTACTGGGCTCACCAATACCACTATTGATAGTCAAATCTCCCTCCTGTTGTCAACCTGAGAAAAATAT-ATTAAGT-GAGACACAGGAAAATCCCTAGACACACCTTACAAGGACTAAGG--GTCCTCATAGCGTGAGCTGATAAATGAGGAAGCCTAGGAAAGTTCTAGCAAGTGGGGAATCCAATGAGACTGTACAGCTAAGAAGTGTGACCTACCTGCCTTGGAAAATCAGAA-AAGATTGCCTCAGAAAAGTCCTTTAGCTTTCCATAGACTTAAA
i panTro4.chr4             C 0 I 22
s ponAbe2.chr4             198218461 449 + 198332218 AAAACTATAAGCCCAACTGAAGTAGTTCCTCATTTGCCACACTGTAAGTTCA-CTC-GTGCACCTAACATAGAGAGTCTA---CATTAGACAGGATGCCAGGTGTGGTATCTGCAGAACAACTGGACCTTAATCTCCCCATTGTTAGACTGACTGATTGCATCATATCCAGGTCCCATCACATAGTTACTGGGCTCACCAATACCACTATTGATAGTCAGATCTCCCTCCTGCAGTCAACCTGAGAAAAATAT-ATTAAGT-GAGATACAGGAAAATCCCTAGACACACCTTACAAGGACTAAGA--GTCCTCATAGTGTGAGCTGATAAATGAGGAAGCCTAGGAAAGTTCTAGCAAGTGGGGAATCCAATGAGACTGTACAACTAAGAAGTGTGACCTACCAGCCTTGGAAAATCAGAA-AAGATTGCCTC------TTCCTTTAGCTTTCCATAGACTTAAA
i ponAbe2.chr4             C 0 I 22
s nomLeu3.chr7b            113892613 449 + 115148730 AAAACTATGGGCCCAACTGAAGTAATTCCTCATTTGCCACGCTATGAGTTCA-CTC-GTGCACCTAACATAGAGAGTCTA---CATGAGACAGGATGCCAGGTGTGGTATCTGCAGAACAATTGGACCTTAATCTCCTCATTGTTAGACTGACTGATTGCATCATATCCAGGTCCCATCACATAGTTACTGGGCTCACCAATACCACTATTGATAGTCAGATCTCCCTCCTGTAGTCAACCTGAGAAAAATAT-ATTAAGT-GAGACGCAGGAAAATCCCTAGACACACCTTACAAGGACTAAGA--ATCCTCACAGCATGAGCTGATAAATGAGGAAGCCTAGGAAAGTTCTAGCAAGTGGGGAATCCAATGAGACTGTACAACTAAGAAGTGTGACCTACCCACCTTGGAAAATCAGAA-AAGATTGCCTC------TTCCTTTAGCTTTCCATAGACTTAAA
i nomLeu3.chr7b            C 0 I 9
s rheMac3.chr5             183808559 447 + 184069350 AAAACTATGGGCACAACTGAAATAATTCCTCATTTGCCACGT--TGAGTTCA-CTG-GTGCATCTAACACAGACAGTCTA---CATTAGACAGGATGTCAGGTGTGGTATCTGCAGAACAATTGGATCTTAATCTCCCCTTTGTTAGACTGACTGACTGCATCACATCCAGGTCCCATCATATAGTTACCGGGCTCACCAATACCATGACTGATAGTCACATCTCCCTCCTGTAGTCAACCTGAGAAAAATAT-ATTAAGT-GAGATGCAGGAAAATCCCTAGACACAACTTACAAGGACTAAGA--GTCCTCATAGCACAAGCTGATAAATGAGGAAGCCTAGGAAAGTACTAGCAAGTGTGGAATCCAATGAGACTGTACAACTAAGAAGTGTGCTTTACCCGCCTCAGAAAATCAGAA-AAGATTGCCTC------TTCCTTTAGCTTTCCACAGACTTAAA
i rheMac3.chr5             C 0 I 22
s macFas5.chr5             189201953 447 + 189454096 AAAACTATGGGCACAACTGAAATAATTCCTCATTTGCCACGT--TGAGTTCA-CTG-GTGCATCTAACACAGACAGTCTA---CATTAGACAGGATGTCAGGTGTGGTATCTGCAGAACAATTGGATCTTAATCTCCCCTTTGTTAGACTGACTGACTGCATCACATCCAGGTCCCATCATATAGTTACCGGGCTCACCAATACCATGACTGATAGTCACATCTCCCTCCTGTAGTCAACCTGAGAAAAATAT-ATTAAGT-GAGATGCAGGAAAATCCCTAGACACAACTTACAAGGACTAAGA--GTCCTCATAGCACAAGCTGATAAATGAGGAAGCCTAGGAAAGTACTAGCAAGTGTGGAATCCAATGAGACTGTACAACTAAGAAGTGTGCTTTACCCGCCTCAGAAAATCAGAA-AAGATTGCCTC------TTCCTTTAGCCTTCCACAGACTTAAA
i macFas5.chr5             C 0 I 9
s papAnu2.chr5             178620123 447 + 178775436 AAAACTATGAGCACAACTGAAATAATTCCTCATTTGCCACGT--TGAGTTCA-CTG-GTGCATCTAACACAGACAGTCTA---CATTAGACAGGATGTCAGGTGTGGTATCTGCAGAACAATTGGATCTTAATCTCCCCTTTGTTAGACTGTCTGACTGCATCACATCCAGGTCCCATCACATAGTTACCGGGCTCACCAATACCATGACTGATAGTCACATCTCCCTCCTGTAGTCAAcctgagaaaaatat-attaagt-ggGATGCAGGAAAATCCCTAGACATACCTTACAAGGACTAAGA--GTCCTCATAGCACGAGCTGATAAATGAGGAAGCCTAGGAAAGTACTAGCAAGTGTGGAATCCAATGAGACTGTACAACTAAGAAGTGTGCTTTACCCACCtcagaaaatcagaa-aagattGCCTC------TTCCTTTAGCCTTCCACAGACTTAAA
i papAnu2.chr5             C 0 I 9
s chlSab2.chr7             135555234 447 + 135778131 AAAACTATGGGCACAACTGAAATAATTCCTCATTTGCCACGT--TGAGTTCA-CTG-GTGCATCTAACACAGACAGTTTA---CATTAGACAAGATGTCAGGTGTGGTATCTGCAGAACAATTGGATCTTAATTTCCCCTTTGTTAGACTGACTGACTGCATCACATCCAGGTCCCATCACATAGTTACCAGGCTCACCAATACCATGACTGATAGTCACATCTCCCTCCTGTAGTCAACCTGAGAAAAATAT-ATTAAGT-GAGATGCAGGAAAATCCCTAGACACACCTTACAAGGACTAAGA--GTCCTCATAGCACGAGCTGATAAATGAGGAAGCCTAGGAAAGTACTAGCAAGTGTGGAATCCAATGAGACTGTACAACTAAGAAGTGTGCTTTACCCGCCTCGGAAAATCAGAA-AAGATTGCCTC------TTCCTTTAGCCTTCCACAGACTTAAA
i chlSab2.chr7             C 0 I 22
s calJac3.chr3             190664091 429 - 190850796 AAAAACATAGGCCCAAAGGAAATCATTCCTGATTTACCACCCTCTGAGTTCA-TCC-ATGCACCTAACACAGAGAGCCTG---CATCAGACAGGATGCTAGCGGTGGTATCTGCTGAATGGCTGGAGCGTA---TCTTCACAGTTAAACCGACTGATTACATTATATCCAGGTCCCATCACATAGGAACAGGGCTTCCCAATACCATTACTGATAG----ATCTCCCTCCTGTAGTCAACCTGAGAAAAACAC-ATTAAGTGGAGATGCAGGAAAATCCCTAAACACACCTTACATGGACTAAGA-------CA----------TGACAAATGAGGAAGCCTAGGAAAGCAGTAGCAATTGCGGAATCCAGTGAGACTACACAACTGAGAATTGTGCTGTCCCTGCCTTGGAAAATCGGAAGAAAATCACCTC------TTCCTTTAGCTTTCTGTAGACTTGAA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87814134 421 - 129401213 AAAACTATGGGCACAACCTAAATAATTCCTCCTTTGATAGACTACAAATTGATCTA-ATGTACTGGATGTAGTAACCATAAATTATCAAGCAGGAGAGCAGATATTGTGTCCTCAGAACAACTGGACATTTAATTGCCCATCATTGGAGTGACTTACCATATAGCACCCAGGT-GAATCACA---------GTCTTGCCAATGCCACTATTGGTATCCAGGACCCCTTTATATTGTCAAC----------------------CAGATGCAGGAAACGCTTTAAACAC--CTTATAACAGCTAAGA--AAGTTCTCAGCCTGACCTGACAAAAGAGCAATCCTAGGAAAGTACTTTCAGCTAGAGAATCAAGTGAGATAGGACAATTAATAGCTGTGCTCTTTCATCCCTGTGAAATCGGAT-AAGATTGTCTT------TCCTTTTATCTTTCTTTGGGCTTAAA
i mm10.chr8                I 530 I 9
s canFam3.chr16             18112816 440 -  59632846 AAAAACATGGTCCCAACTTAAGTAATTCCTTCATTACCACACTATAAATCCC-TTCAATTCACTGAATATTGCAACTGTA---AAATAGTAA--ACACCATATACTGTTTCAGCAGAACAATTAGACCATAATCTTCCCAT-GCTAAGATGACTTATTACCTGACACCCAAGTCCCATCACATAATTATATGTCTTAATAATACCATGATTGATAGTCAGATTTCCCTCTTGTAGTCAACTTGAGAAAAATATGAATAAAT-AT------AGAAAATATCTATCTAT--CTTACAAGGGCTAAGATAGTCTTCATAGCCCAAGCTGATAAATAAAGAATCCTAGGAACGTACTTGCAGGTACAGCATCAAATGAGACCATAAAATTAATAGCTGTGCTCTTCCAGCATTGGAAAATCAAAT-AACATTGCTCT------TTCCTTTGCACTTCTCTAGACTAA--
i canFam3.chr16            C 0 C 0

a score=5904.000000
s hg38.chr4_KI270925v1_alt    433884 9 +    555799 TATCAAGGT
s panTro4.chr4             193145954 9 + 193495092 TACCAAGGT
i panTro4.chr4             I 22 C 0
s nomLeu3.chr7b            113893071 9 + 115148730 TGTGAAATT
i nomLeu3.chr7b            I 9 I 4
s macFas5.chr5             189202409 9 + 189454096 TGTGAAACT
i macFas5.chr5             I 9 I 4
s papAnu2.chr5             178620579 9 + 178775436 TGTGAAACT
i papAnu2.chr5             I 9 I 4
s calJac3.chr3             190664520 5 - 190850796 ----ATAGT
i calJac3.chr3             C 0 I 17
s mm10.chr8                 87814564 9 - 129401213 TGTGAAAGT
i mm10.chr8                I 9 C 0
s canFam3.chr16             18113256 9 -  59632846 AATTAAGGC
i canFam3.chr16            C 0 C 0
e chlSab2.chr7             135555681 22 + 135778131 I
e rheMac3.chr5             183809006 22 + 184069350 I
e ponAbe2.chr4             198218910 22 + 198332218 I

a score=267723.000000
s hg38.chr4_KI270925v1_alt    433893 78 +    555799 TAtcaaggttatgttgtaaaaagcagaaattactgcctaccctgcagaagggagtgt------aaagattgggtgc-taatgaca
s panTro4.chr4             193145963 78 + 193495092 TAtcaaggttatgttgtaaaaagcagaaattactgcctaccctgcagaaaggagtgt------gaagattgggtgc-taatgaca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198218932 83 + 198332218 TATCAAGGTTATGTTGT-AAAAGCAGAAATTACTGCCTACCCCGCAGAAAGGAGTGTGATACAGAAGATTGGGTGC-TAATGACA
i ponAbe2.chr4             I 22 C 0
s nomLeu3.chr7b            113893084 84 + 115148730 TATCAACGTTATGTTGTAAAAAGTGGAAATTGCTGCCTACACCgcagaaacgagtgtgatacagaagattgggtgc-taatgaca
i nomLeu3.chr7b            I 4 C 0
s rheMac3.chr5             183809028 84 + 184069350 Tgtcaaggttatgttgtaaaaagcagaaattactgcctaccccacagaaaggagtgtgatacagaagactgggtgc-taatgaca
i rheMac3.chr5             I 22 C 0
s macFas5.chr5             189202422 84 + 189454096 Tgtcaaggttatgttgtaaaaagcagaaattactgcctaccccacagaaaggagtgtgatacagaagactgggtgc-taatgaca
i macFas5.chr5             I 4 C 0
s papAnu2.chr5             178620592 84 + 178775436 TGTCAAGGTTATGTTGTAAAAAGCAGAAATTACTGCCTACCCTGCAGAAAGGAGTGTGATACAGAAGACTGGGTGC-TAATGACA
i papAnu2.chr5             I 4 C 0
s chlSab2.chr7             135555703 84 + 135778131 Tgtcaaggttatgttgtaaaaagcagaaattactgcctaccccgcagaaaggagtgtgatacagaagactggatgc-taatgaca
i chlSab2.chr7             I 22 C 0
s calJac3.chr3             190664542 84 - 190850796 TGCCAAGGTTATGCTGTAAAAAGCAGAAATTACCACCTACCCAGCAGAAAGGAGTGTGATACAGAAGACTTGGGGC-CAACGACA
i calJac3.chr3             I 17 C 0
s mm10.chr8                 87814573 78 - 129401213 TTCCAAGTTTA-GTTGTAGAAAGCAGAAAATACAACCTATCTAGCACAAAGGAATGT------GAAATGTAGTTATATAATATCA
i mm10.chr8                C 0 I 20
s canFam3.chr16             18113265 67 -  59632846 ---------------TTagaaagcacaaaccacaaccaat-cagcagaaa-gagtgtgatataggacactgagcgt-gaacaaca
i canFam3.chr16            C 0 C 0

a score=115834.000000
s hg38.chr4_KI270925v1_alt    433971 42 +    555799 ctgaaaggaggagtgacctctgggctgagtctccaggaagga
s panTro4.chr4             193146041 42 + 193495092 ctgaaaggaggagtgacctctgggctgagtctccaggaagga
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198219015 42 + 198332218 CTGAAAGGAGGAGTGAGCTCTGGGCTGAGTCTCCAGGAAGGA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113893168 42 + 115148730 ctgaaaggaggagtgagctctgggctgagtctccaggaagga
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183809112 42 + 184069350 ctgaaaggagaagtgagctttgggctgagtctccaggaagga
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189202506 42 + 189454096 ctgaaaggagaagtgagctttgggctgagtctccaggaagga
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178620676 42 + 178775436 CTGAAAGGAGGAGTGAGCTTTGGGCTGAGCCTCCAGGAAGGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135555787 42 + 135778131 ctgaaaggagaagtgagctttgggctgagtctccaggaagga
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190664626 12 - 190850796 CTGAAA------------------------------GAAGGA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18113332 38 -  59632846 ttgagaggaggagta----cagcactgagtctccaggatgca
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87814651 20 - 129401213 I

a score=319199.000000
s hg38.chr4_KI270925v1_alt    434013 107 +    555799 cccccagcaacc-ctgcaga----gccatccagaggga-tggcccagt----caggaaggc-aggaatccagaga--caactgcc-ttctatacccacccaagctggtggccagacactgc
s panTro4.chr4             193146083 107 + 193495092 cccccagcaacc-ctgcaga----gccacccagaggga-tggcccagt----caggaaggc-aggaatccggaga--caaccgcc-ttctatacccacccaagctggtggccagacaccgc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198219057 107 + 198332218 CCCCCAGCAACC-CTGCAGA----GCCATCCAGAGGGA-TGGCCCAGT----CAGGAAGGC-AGGAATCCGGAGA--CAACTGCC-TTCTATACCCACCCAAGCTGGTGGCCAGACACTGC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113893210 107 + 115148730 cccccagcaacc-ctggaga----gtcatccagaggga-tggcccagt----caggaaggc-aggaatctggaga--caactgca-ttctatacccatccaagctggtggtcagacactgc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183809154 107 + 184069350 cccccagcaacc-ctgcaga----gctatccagaggga-tggcctagt----ccggaaggc-aggaatctggaga--cGACTGCC-TTCTCTCCCCACCCAAGCTGGTGGCCAGACACTGC
i rheMac3.chr5             C 0 I 6
s macFas5.chr5             189202548 107 + 189454096 cccccagcaacc-ctgcaga----gctatccagaggga-tggcctagt----ccggaaggc-aggaatctggaga--cGACTGCC-TTCTCTCCCCACCCAAGCTGGTGGCCAGACACTGC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178620718 107 + 178775436 CCCCCAGCAACT-CTGCAGA----GCCATCCAGAGGGA-TGGCCCAGT----CCGGAAGGC-AGGAATCTGGAGA--CGActgcc-ttctctccccacccAAGCTGGTGGCCAGACACTGC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135555829 107 + 135778131 cccccagcaacc-ctgcagg----gccatccagaggga-tggcctagt----ccggaaggc-aggaatctggaga--cGACTGCC-TTCTCTCCCCACCCAAGCTGGTGGCCAGACACTGC
i chlSab2.chr7             C 0 I 6
s calJac3.chr3             190664638  93 - 190850796 CCCCGAGCAACC-CT-CAGA----ATCACCCAGAGAGG-TGGCCCAGG----CAGAAAGGC-AGGAA---------------gcc-tctgtcccccacccaagctggtggccggatgctgg
i calJac3.chr3             C 0 I 1
s mm10.chr8                 87814671  94 - 129401213 CCCTCAGGAAGT-----------------------GGA-TAGCCTAGTAGGGCAGAAAGGTGAAGAATCAGAAAG--GAACTGCC-ATGGACTCCCACTGAAAGTTGTATCAAGGCTTCGG
i mm10.chr8                I 20 I 3
s canFam3.chr16             18113370 115 -  59632846 ctcccagaaacccctgcagaattggtcatccaggggaagcagcccaat----caggaaagt-taggaactgaaaaagcaagtgccattcaatacccattggagctagtgatcagactcaa-
i canFam3.chr16            C 0 C 0

a score=37117.000000
s hg38.chr4_KI270925v1_alt    434120 32 +    555799 acag--ggctacagaaagaccctccttccccacc
s panTro4.chr4             193146190 32 + 193495092 acag--ggctacagaaagaccctccttccccacc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198219164 32 + 198332218 ACAG--GGCTACAGAAAGACCCTCTGTCCCCACC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113893317 32 + 115148730 acag--gcctacagaaagaccctccgtccccacc
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189202655  6 + 189454096 ---T--GGCTG-----------------------
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178620825 31 + 178775436 ACAG--GGCTACCGAAAGACCCTC-GTCCCCACT
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190664732 32 - 190850796 acag--ggctacagaaagcccctccatccccacc
i calJac3.chr3             I 1 C 0
s mm10.chr8                 87814768 34 - 129401213 ACAGCTAGATAGAGAAATGCTATCGTCCACCACT
i mm10.chr8                I 3 C 0
s canFam3.chr16             18113485 32 -  59632846 acaa--ggctacagaaaaaagtctctctactacc
i canFam3.chr16            C 0 C 0
e chlSab2.chr7             135555936  6 + 135778131 I
e rheMac3.chr5             183809261  6 + 184069350 I

a score=1508568.000000
s hg38.chr4_KI270925v1_alt    434152 466 +    555799 gcagagcctgccagcaggagg-ac-acctccttctctgttctgacttgcagtccgtacctaagagaatctgattggtgaggccaatttgcatccagaaactcaggcagaagggtatctgggaaacgtagttttcggctctgcagccgctacagtccaggaagatgcaaccaaaggaggaaacaggtgctcagccttcatctaccacaGATTAGGTAATTAATCTAATGCACCTGATTTACCACACAGGCCTCAAAGCACGGCTTTCCCAACAGCCTCTACCTGTAGTC-ATATTTCGGGAAGACTTCCTCACCTCTGTCAGCTGAGACATGGAACTGCACCCACAGCTGTTGGTGCAATAAATACAATA-----------------GCTGAAACTACTGTGTGTTTGCTTTTACACTACTG-TGTGcccactttaaagtttaagaagctgaggaacagagaggtaaaatagcatgcccaagggcaca--
s panTro4.chr4             193146222 466 + 193495092 gctgagcctgccagcaggggg-ac-acctctttctctgttctgacttgcagtctgtacataagagaatctgattggtgaggccaatttgcatctagaagctcaggcagaagggtatctgggaaacgtagttttcggctctgcagccgctacagtccaggaagatgcaaccaaaggaggaaacaggtgctcagccttcatctaccacaGATTAGATAATTAATCTAATGCACCTGATTTACCACACAGGCCTCAAAGCACGGCTTTCCCAACAGCCTCTACCTGTAGTC-ATATTTCAGGAAGACTTCCTCACCTCTGTCAGCTGAGACATGGAACTGCACCCACAGCTGTTGGTGCAATAAATACAATA-----------------GCTGAAACTACTGTGTGTTTGCTTTTACactattg-tgtgcccactttaaagtttaagaagctgaggaacagagaggtaaaatagcgtgcccaagggcaca--
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198219196 466 + 198332218 GCTGAGCCAGCCAGCAAGGGG-AC-ACCTCCTTCTCTGTTCTGACTTGCAGTCCGTACATAAGAGAATCTGATCGGTGAGGCCAATTTGCATCTAGAAGCTCAGGCAGAAGAGTATCTGGGAAACGTAGTTTTCGGCTCTGCAGCCACTACAGTCCAGGAAGATGCAACCAAAGGAGGAAACAGGTGCTCAGCCTTCATCTACCACAGATTAGGTAATTAATCTAATGCACCTGATTTACCACACAGGCCTCAAAGCACGGCTTTCCCAACAGCCTCTACCTGTAGTC-ATATTTCAGGAAGACTTCCTCACCTCTGTCAGCTAAGACATGGAACTACACTCACAGCTGTTGGTGCAATAAATACAATA-----------------GCTGAAACTACTGTGTGTTTGCTTTTACactattg-tgtgcccactttaaagtttaagaagctgaggaacagagtggtaaaatagcatgcccaaggtcaca--
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113893349 466 + 115148730 gctgagcctgccagcaggggg-ac-acctccttctctgttttgacttgcagtcggtacataagagaatctaattggtgatgccaatttgcatctagaagctcaggcagaagagtatctgggaaatgtagttttcggctctgcagctgctacagtccaggaagatgcaaccaaaggaggaaacaagtgctcagccttcatctgccacaGATTAGGTAATTAATCTAATGCACCTGATTTACCACACAGGCCTCAAAGCACCGCTTTCCCAACAGCCTCTACCTGTAGTC-ATATTTCAGGAAGACTTCCTCACCTCCGTCAGCTGAGACATGGTACTACACCCACAGCTATTGGTGCAATAAATACAATA-----------------GCTGAAACTACTGTGTGTCTGCTTTTACactattg-tgtgcccactttaaagtttaagaagctgaggaacagagaggtaaaatagaatgcccaaggtcaca--
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183809267 483 + 184069350 GCTGAGCCTGCcagcaggggg-ac-accaccttctctgctctgacttccagtccctacataagagaatctaattggtgaggccaatgtacatctggaagctcaggcagaagagtatctgggaaacatagttttaggctctgcagccgctacagtccaggaagatgcaaccgaaggaggAAACAGGTGCCCAGCCTTCGTCTACCCCAGATAAGGTAATTAATCTAATGCACCTGATTTAGCACCCAGGCCTCAAAGCTCGGCTTTCCCAGCAGCCTGTACCTGTAGTT-CTATTTCAGGAAGACTTCCTCGCCTCTGTCAGCTGAGACACAGAGCTACACCCACAGCTGAAGGTGCAATAAATACAATAGCTGAATACCTACAATGGCTGAAACCACTGTGTGTGTGCTTTCACGctattg-tgtgcgcagtttaaagtttcagaagctgagaaacagaaaggtaaaatagtgtgcccaaggtcaca--
i rheMac3.chr5             I 6 C 0
s macFas5.chr5             189202661 483 + 189454096 GCTGAGCCTGCcagcaggggg-ac-accaccttctctgctctgacttccagtccctacataagagaatctaattggtgaggccaatgtacatctggaagctcaggcagaagagtatctgggaaacatagttttgggctctgcagccgctacagtccaggaagatgcaaccgaaggaggAAACAGGTGCCCAGCCTTCGTCTACCCCAGATAAGGTAATTAATCTAATGCACCTGATTTAGCACCCAGGCCTCAAAGCTCGGCTTTCCCAGCAGCCTGTACCTGTAGTT-CTATTTCAGGAAGACTTCCTCGCCTCTGTCAGCTGAGACACAGAGCTACACCCACAGCTGAAGGTGCAATAAATACAATAGCTGAATACCTACAATGGCTGAAACCACTGTGTGTGTGCTTTCACGctattg-tgtgcgcagtttaaagtttcagaagctgagaaacagaaaggtaaaatagtgtgcccaaggtcaca--
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178620856 483 + 178775436 GCTGAGCCTGCCAGCAGGGGG-AC-ACCTCCTTCTCTGCCCTGACTTCCAGTCCCTACATAAGAGAATCTAATTGGTGAGGCCAATGTACATCTGGAAGCTCAGGCAGAAGAGTATCTGGGAAACGTAGTTTTGGGCTCTGCAGCCGCTACAGTCCAGGAAGATGCAACCGAAGGAGGAAACAGGTGCCCAGCCTTCGTCTACCCCAGATGAGGTAATTAATCTAATGCACCTGATTTACCACCCAGGCCTCAAAGCTCGGCTTTCCCAGCAGCCTGTACCTGTAGTT-CTATTTCAGGAAGACTTCCTCGCCTCTGTCAGCTGAGACACGGAGCTACACTCACAGCTGAAGGTGCAATAAATACAATAGCTGAATACCTACAATGGCTGAAACCACTGTGTGTGTGCTTTCACGCTATTG-TGTGCGCAGTTTAAAGTTTCAGAAGCTGAGAAACAGAGAGGTAAAATAGTGAGCCCAAGGTCATA--
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135555942 483 + 135778131 GCTGAGCCTGCcagcaggggg-ac-acctccttctctgctctgacttccagcccctacataagagaatctaattggtgaggccaatgtacatctggaagctcaggcagaagagtatctgggaaacgtagttttgggctctgcagccgctacagtccaggaagatgcaaccgaaggaggAAACAGGTGCCCAGCCTTCGTCTACCCCAGATGAGGTAATTAATCTAATGCACCTGATTTACCACCCAGGCCTCAAAGCTCGGCTTTCCCAGCAGCCTGTACCTGTAGTT-CTATTTCAGGAAGACTTCCTCGCCTCTGTCAGCTGAGACACGGAGCTGCACCCACAGCTGAAGGTGCAATAAATACAATAGCTGAATACCTACAATGGCTGAAACCACTGTGTGTGTGCTTTCACGctattg-tgtgcgcagtttaaagtttcagaagctgagaaacagagaggtaaaatagcgtgcccaaggtcaca--
i chlSab2.chr7             I 6 C 0
s calJac3.chr3             190664764 462 - 190850796 tctgagcctgcacacagggggaat-gcctccttctcatttctgacttccagtccttacgtaagagaa--taattggtgagtccagttcacatctagaacctcaggcagaagagcatcttggaaacgtagttttgggctttgcagcctctctagtccaggaagatgcaaccgaagaaggaaacaggtgctCACCCTTCGTCTACCCCAGATTAGGTAATTAACCCAATGCACCTGATTTACCACACGGGTCTAAAAGCTTGGCTTTTCCAACAGCCTCTACCTGTAGTC-AAATTTCAGGAAGACTTCCTCACCT--GTCAACTGAGATGAGGGACTACACCCACAGCTGTAGGTGCAATAAATACAATA-----------------GCCAAAATGAATCTGCGTTTACTTTTAGACTGTCA-TGTGTccactttaaagtttaagaagctgaggta-agagaggtgaaatagcaggcccagggttaca--
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87814802 395 - 129401213 ----GGAGTGCCTGCAG-----TG-ACCATCTTCTCATTTCTGATTTCCAAGCATTGGATAGGAGAATATAACCAATCTGGTAAATTTGAGTGTGCAGACTCAAGGAGAAGGATATCCAAGAACTATCAACTGGGACTT---------TCTAATACAGAAACGTACCA--------------AGGTG----GTTCAAGTCTAACACAGCTTAGGTCATTAATCTAATCTATCTAATAATCCATGCA-TCTTAAAAGCAACACCTCCTCAACAGCTTCCATGTGTAGAG-ACCGTCCA-CAATGCCTCCAGACTTAAGCCATCCTAGACACTGACTGACAACCACAGC------------AAATACAATA--------------AAAGCTCACACTAGCATGTGCTTGCTCATAC--------------CAGTTAAAGAGCTAAAAA------------AGTATTACAATAGCATGTCCTGGGACACA--
i mm10.chr8                C 0 I 291
s canFam3.chr16             18113517 461 -  59632846 ---agatttgccagcagggtg-actgcctccttctcatttctgccttccaaaccttac-tgagaaagtccaaatcataaggtcaactga---ttaaggttctaggcagaaagatgtctcagaaatgtacttttggaatctgcagcctctgtagtacaggacaatgcagtaaaaggagagaagatgtcctcagccttaacctgccaCAGATTAAGTCATTAATTTAATCTACCTAATTTACCATATAGACCTGAAAACATTATTTTCCCAATAGTCTCAAACTGTATTCAATACTCCACAAAGTCTATCTTCCCTATGTCAACCTGGACCCATAACCACACCCACAGGTATAAACATGATAAATATAATA-----------------GCTAATAGTAACATGTACTTAATT---Cattattattatcccaattttaaagttgaagacactacgaaacagagagctgaagtaatgtgtcccagatgacaaa
i canFam3.chr16            C 0 C 0

a score=947626.000000
s hg38.chr4_KI270925v1_alt    434618 330 +    555799 g------------------------------------------------tcacaagtggTTGGAGAAAACTGGCTCCGTAATTTCTGATCTTACTCTCTAAACTATATAAACGAAAACCATATAAAAATTTACAGTCCAGACTATCTAGCCTGAGAGATGTAGGAGGCAGGCCTCGGGCTTTTACCAATGGCCCTGTGCCATCTAACTTCAATGATCTGATATCTCACTGAGCCCA-TATCTTAATCTCCTGCCTGGGGGGA-CCTAGATGGAAAGAGGA-AAAGGGCTTGCTGCCACTGTCCTCTCTCCTTGTTCCCAGAAAGCATTAGACCGCAGAAGGTGGAATGCTAAA---------GAGAGAGGCAACTG------------------------------------------------------CAGGATCAGCTCCC
s panTro4.chr4             193146688 329 + 193495092 g------------------------------------------------tcacaagtggTTGGAGAAATCTGGCTCTGTAATGTCTGATCTTACTCTCTAAACTACATAAACGAAAACCATATAAAAATTTACAGTCCAGACTATCTAGCCTGAGAGATGTAGGAGGCAGGCCTCGGGCTTTTACCAATGGCC-TGTGCCATCTAACTTCAATGATCTGATATCTCACTGAGCCCA-TATCTTAATCTCCTACCTGGGGGGA-CCTAGATGGAAAGAGGA-AAAGGGCTTGCTGCCACTGTCCTCTCTCCTTGTTCCCAGAAAGCATTAGACCGCAGAAGGTGGAATGCTAAA---------GAGAGAGGCAACTG------------------------------------------------------CAGGATCAGCTCCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198219662 331 + 198332218 g-----------------------------------------------ttcacaagtggttggagaaatctggctccaccatttctgaccttactctctaaactataTAAATGAAAACCATATAAAAATTTACAGTCCAGACTATCTAGCCTGAGAGCTGTAGGAGGCAGGCCTAGGGCTTTTACCAATGGCCCTGTGCCATCTAACTTCAATGATCTGATATCTCACTAAGCCCA-TATCTTAATCTCCTGCCTGGGGGGA-CCTAGATGGAAAGAGGA-AAAGGGCTTGCTGCCACTGTCCTCTCTCCTTGTTCCCAGAAAGCATTAGACTGCAGAAGGTGGAACGCTAAA---------GAGAGAGGCAACTG------------------------------------------------------CAGGATCAGCTCCC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113893815 331 + 115148730 g-----------------------------------------------ttcacaagtggttggagaaatctggctccataatttctgatcttactctctaaactataTAAATGAAAACCATATAAAAATTTACAGTCCAGACTATCTAGCCTGAGAGATGTAGGAGGCAGGCCTAGGGCTTTTACCAATGGCCCTGTGCCATCTAATTTCAATGATCTGATATCTCACTAAGCCCA-TATCTTAATCTCCTGCCTGGGGGGA-CCTAGATGGAAAGAGGA-AAAGGTGTTGCTGCCACTGTCCTCTCTCCTTGTTCCCAGAAAGCATTAGACCGCAGAAGGTGGAATGCTAAA---------GAGAGAGGCAACTG------------------------------------------------------CAGGATCAGCTCCC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183809750 313 + 184069350 g-----------------------------------------------atcacaagtagttggagaaatctggctccataatttctgatctttctctctaaactataTAAATGAAAACCATATAAAAATTTATAGTCCAGACTCTCTAGCCTGAGAGATGTAGGAAACAGGCCTAGGGCTTTTATCAATGGCCCTGTGCCATCTAATTTCAATGATCTGATATCTCACTAAGCCCA-TATCTTAATCTCCTGCCTGGGGGGA-CCTAGATGGAAAGAGGATTCAGGGCTTGCTGCCACTGCCCTCTCTCCTTGTTCCCAGAAAGCATTAGACCGCAGAAGGTGGGATGCTAAA----------AGAGAGA------------------------------------------------------------------------TC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189203144 313 + 189454096 G-----------------------------------------------ATCACAAGTAGTTGGAGAAATCTGGCTCCATAATTTCTGATCTTTCTCTCTAAACTATATAAATGAAAACCATATAAAAATTTATAGTCCAGACTCTCTAGCCTGAGAGATGTAGGAAACAGGCCTAGGGCTTTTATCAATGGCCCTGTGCCATCTAATTTCAATGATCTGATATCTCACTAAGCCCA-TATCTTAATCTCCTGCCTGGGGGGA-CCTAGATGGAAAGAGGATTCAGGGCTTGCTGCCACTGCCCTCTCTCCTTGTTCCCAGAAAGCATTAGACCGCAGAAGGTGGGATGCTAAA----------AGAGAGA------------------------------------------------------------------------TC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178621339 313 + 178775436 G-----------------------------------------------TTCACAAGTAGTTGGAGAAATCTGGCTCCATAATTTCTGATCTTTCTCTCTAAACTATATAAATGAAAACCATATAAAAATTTACAGTCCAGACTCTCTAGCCTGAGAGATGTAGGAAACAGGCCTAGGGCTTTTATCAATGGCCCTGCGCCATCTAATTTCAATGATCTGATATCTCACTAAGCCCA-TATCTTAATCTCCTGCCTGGGGGGA-CCTAGATGGAAAGAGGATTCAGGGCTTGCTGCCACTGCCCTCTCTCCTTGTTCCCAGAAAGCATTAGACCGCAGAAGGTGGGATGCTAAA----------AGAGAGA------------------------------------------------------------------------TC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135556425 313 + 135778131 g-----------------------------------------------ttcacaagtagTTGGAGAAATCTGGCTCCATAATTTCTGATCTTTCTCTCTAAACTATATAAATGAAAACCATATAAAAATTTACAGTCCAGACTCTCTAGCCTGAGAGATGTAGGAAACAGGCCTAGGGCTTTTATCAATGGCCCTGCGCCATCTAATTTCAATGATCTGATATCTCACTAAGCCCA-TATCTTAATCTCCTGCCTGGGGGGA-CCTAGATGGAAAGAGGATTCAGGGCTTGCTGCCACTGCCCTCTCTCCTTGTTCCCAGAAAGCATTAGACGGCAGAAGGTGGGATGCTAAA----------AGAGAGA------------------------------------------------------------------------TC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190665226 372 - 190850796 GTTCGAAACCTGGCTCTGTAATTTCTGATTCTACTCTCTCAACTACAGTTCGCAGGTGGTTACAGAAACCTGGATCCGTAATTTCTGATCCTACTCT-----TTACATAAATGGAAACCATATAAAAATTTGCAGTCCAGACTGTCTAGCCTGAGAGATGTAGGAGGCAGGCCTAGGATTTTTACCAGTGACCATGTGTCATCTGATTTCAATGGTCTGATAGCTCACTAAGCCCAGCATCTTGATGTCCCGCCTGGGGGAA-CCTTGATGGAAAGACGAGTAAGGGTTCGCTGCCACTGTCCTCTCCCATTGTT-GCACAAAGCATTAGACTGCAGAAGATGGATTGCTAAA----------AGAGTGA-AACTA------------------------------------------------------AAAGATCAGCTCCT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18113978 372 -  59632846 g-----------------------------------------------ttaaaaagtgg-cagagcaatctgcctccaaaatttgtg-----------taatctctatAAATGGAAACCACAGAAAAACCTGCAGTCCAGACTCTCCAGACAG-GAGATGTATGAGGCATGCATAGGTTATGTACACACAACCAGGTATCCTTGAATTCAGATGTTCGGATATTTTACTAAGCTCAGTACCTTAATCTCTTGCCAAGAGGAACCCTAGATAGACAGTGCT------------TATCACTGTCCTTCCTCTTCACTCCCAGAAAGTGCTGGACCACAGAAGATGGATTGCTAAAAGAGAACATGAGGggggcatctgggtggctcagtagttgagcatctgcctttggcttgggtcacaatcctggagtcccaggatcaagttcc
i canFam3.chr16            C 0 I 119
e mm10.chr8                 87815197 291 - 129401213 I

a score=984439.000000
s hg38.chr4_KI270925v1_alt    434948 355 +    555799 GAGGAGCCGCAG------TTTCACAAGCGGTGTGGTCAT-CCCCACAGACAATGAATAATGCACCATAAATAAAGACTTGGACACTCCCACAAGATCTAGAGTTGTGCCTTTTTCTATGCCTGGCCCTTTCAAAAGTCCCATCTC-----AGAAATAGAGGGGTGGAGGAAGACGTGAGCTCCCCACAGTAACAGGGCAGCA--GGAGCTCC--TGTTCCCAC----AAGGGAGCCTCA---------------GACCTCCACACCCAGAGCTTGACTCCAAGCTCCACCAGGCTCAACCTCTACCCATTGCTCCGCAAAAACTCTGGTCCCATAGA----------------CCTCCGTCCAGAAATCCTGCCTATCCAGACTCATGCTG--ACTAGATCCTGCCTT
s panTro4.chr4             193147017 355 + 193495092 GAGGAGCCGCAG------TTTCACAAGCGCTGTGGTCAT-CCCCACAGACAATGAATAATGCACCATAAATAAAGACTTGGACACTCCCACAAGATCTAGAGTTGTGCCTTTTTCTATGCCTGGCCCTTTCCAAAGTCCCATCTC-----AGAAATAGAGGGGTGGAGGAAGACGTGAGCTGCCCACAGTAACAGGGCAGCA--GGAGCTCC--TGTTCCCAT----AAGGGAGCCTCA---------------GACCTCCGCACCTAGAGCTTGACTCCAAGCTGCACCAGGCTCAATCTCCACCCATTGCTCCGCAAAAACTCTGGTCCCATAGA----------------CCTCCGTCCAGAAATCCTGCCCATCCAGACTCATGCTA--ACTAGATCCTGCCTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198219993 354 + 198332218 GAGGAGCCGCAG------TTTCACAAGAGGTGTGGTCAT-CCCCACAGACAATGAATAATGCACCACAAATAAAGACTTGGACACTCCTACAAGATCTTGAGTTGTGCCTTTTTCTATGCCTGGCTCTTTCAAAAGTCTCATCTC-----AGAAATAGAGGGGTGGAGGAAGACGTGAGCTGCCCATAGTAAT-GGGCAGCA--GGAGCTCC--TGTTCCCAC----AACGGAGCCTCA---------------GACCTCCGTACCCTGAGCTTGACTCCAAGCTGCACCAGGCTCAATCCCTACCCATTGCTCCGCAAAAACTCTGGTCCAGTAGA----------------CCTCCGTCCAGAAATCCTGCCTATCCAGACTCATGCTA--ACTAGATCCTGCCTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113894146 355 + 115148730 GAGGAGCCGAAG------TTTCACAAGAGGTGTGGTCAT-CCCCACAGACAATGAATAATGCACCATAAATAAAGACTTGGACACTTCCACAAGATCTTGAGTTGTGCCTTTTTCTAGGCCTGGCCCTTTCAAAAGTCCCATCTC-----AGAAATAGAGGGGTGGAGGAAGACGTGAGCTGCCCATAGTAACAGGGCAGCA--GGAGCTCC--TGTTCCCAC----AACGGAGCCTCA---------------GACCTCCGCACCCAGAGCTTGACTCCAAGCTGCACCAGGCTCAATCCCTACCCATTGCTCTGCAAAAACTCTGGTCCCGTAGA----------------CCTCCATCCAGAAATCCTGCCTATCCAGACTCATGCTA--ACTAGATCCTGCCTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183810063 349 + 184069350 GAGGATCCGCAT------GTTCGCAAGAGGTGTGGGCCT-CCCCACCGACAAGGATTAATGCACCATAAATAAAGACTTGGCCCCTCCCACAGGAACTTGAGTTGTGCCTTTTTCTATGCCTGGCCCTTTCAGAAGTCCCGACTC-----AGAAACAGA-GGGTGGAGGAAGACGTGAGCTGCCCACAGTAAC--AGCAGCA--GGAGCTCC--TGTTCCCGC----AACGGAGCCTCG---------------GACCTCGGCACCCAGAGCTTGACTCCAAGCTACACCAGGCTCGATCCCTACCCACCGCTCAGCAAAAACTCCAGTCCTGCAGA----------------CCTCCGTCCAGAAATCCCGCCTATCCGGGATC---CCA--ACTAGATCCTGCCTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189203457 349 + 189454096 GAGGATCCGCAT------GTTCGCAAGAGGTGTGGGCCT-CCCCACCGACAAGGATTAATGCACCATAAATAAAGACTTGGCCCCTCCCACAGGAACTTGAGTTGTGCCTTTTTCTATGCCTGGCCCTTTCAGAAGTCCCGACTC-----AGAAACAGA-GGGTGGAGGAAGACGTGAGCTGCCCACAGTAAC--AGCAGCA--GGAGCTCC--TGTTCCCGC----AACGGAGCCTCG---------------GACCTCGGCACCCAGAGCTTGACTCCAAGCTACACCAGGCTCGATCCCTACCCACCGCTCAGCAAAAACTCCAGTCCTGCAGA----------------CCTCCGTCCAGAAATCCCGCCTATCCGGGATC---CCA--ACTAGATCCTGCCTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178621652 349 + 178775436 GAGGATCCGCAT------GTTCGCAAGAGGTGTGGGCCT-CCCCACGGACAAGGATTAATGCACCATAAATAAAGACTTGGCCCCTCCCACAGGAACTTCAGTTGTGCCTTTTTCTATGCCTGGCCCTTTCAGAAGTCCCGTCTC-----AGAAATAGA-GGGTGGAGGAAGACGTGAGCTGCCCACAGTAAC--AGCAGCA--GGAGCTCC--TGTTCCCGC----AACGGAGCCTCG---------------GACCTTGGCACCCAGAGCTTGACTCCAAGCTACACCAGGCTCGATCCCTACCCACCGCTCAGCAAAAACTCCAGTCCTGCAGA----------------CCTCCGTCCAGAAATCCCGCCTATCCGGGATC---CCA--ACTAGATCCTGCCTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135556738 349 + 135778131 GAGGATCCGCAT------GTTCGCAAGAGGTGTGGGCCT-CCCCACGGACAAGGATTAATGCACCATAAATAAAGACTTGGCCCCTCCCACAGGAACTTGAGTTGTGCCTTTTTCTATGCCTGGCCCTTTCAGAAGTCCCATCTC-----AGAAATAGA-GGGTGGAGGAAGACGTGAGCTGCCCACAGTAAC--AGCAGCA--GGAGCTCC--TGTTCCCGC----AACGGAGCCTTG---------------GACCTCAGCACCCAGAGCTTGACTCCAAGCTATACCAGGCTCGATCCCTACCCACCACTCAGCAAAAACTCCGGTCCCGCAGA----------------CCTCCATCCAGAAATCCTGCCTATCCGGGATC---CTA--ACTAGATCCTGCCTT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190665598 341 - 190850796 GAGGAGCCT--G------TTTCACAAGACGCACGGTCAT-CCCCAT-GACCATGAGTAATCCACCGTAAATAAAGACTTGGACACTCCCCCAAGGACTTGAGTTGTGCCTTTTTCTATGCCTGGCCCTTGCCAAGGTCCCATCTC-----AGAAATAGAGGGGTGGAGGAAGATGTGAACTGCCCATAGTAACAGGGCAGCA--GGAGCCCC--TGTTCCCACAGAGAAAGGAGCC----------------------------CCCTGAGCCTGACTCCGAGCTGCACCAGCCTCAATCCCTACCCATTGTTCAGCAACGACTGT-GTCCCTTAGA----------------CCTCCATCCAGAAATCGTGCCTATCCAGACTCATCCTG--ACTAGA-CCTGCCTG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18114469 395 -  59632846 GAGGAGCTGAAGCACTGATTTCCTTGGACATATAGCCATATATCGTTGACAACACATGATCCACCATAAACAAGGACTCAGATATTTTTATTCATGTTCAGATTCTG--TTTGAATAAGGATGGCCCTTTAGGAAGTTAGTTCTACCATGAGAGATAGA---------GGAGACATGAATTGTCCATGTAGAAGGGACAGCAAGAGAGCTCCAGTATGCCAGCAGAGAAAGAAGCCTTACTCATAGCTGACCTTGGACTCAGCACC-AGAGCCTGCCTCACAGCT-CACCAGCCTTAATCTCTGCCCGTTGGTCAGCAAAGGTCCCAAGCCCTTGGGCCAAGCCTTAAATTTCCCTTCATCCAGCAATCTTGCCTTTCCAGATTCCTGCCATTATCAGACTCTATCTT
i canFam3.chr16            I 119 I 261
e mm10.chr8                 87815197 291 - 129401213 I

a score=19420.000000
s hg38.chr4_KI270925v1_alt    435303  9 +    555799 TGCCCGA-CC
s panTro4.chr4             193147372  9 + 193495092 TGCCAGA-CC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198220347  9 + 198332218 TGCCAGA-CC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113894501 10 + 115148730 TGACAGACCC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183810412  9 + 184069350 TGCCAGA-CC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189203806  9 + 189454096 TGCCAGA-CC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178622001  9 + 178775436 TGCCAGA-CC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135557087  9 + 135778131 CGCCAGA-CC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190665939  8 - 190850796 TGCCA-A-CC
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87815197 291 - 129401213 I
e canFam3.chr16             18114864 261 -  59632846 I

a score=60776.000000
s hg38.chr4_KI270925v1_alt    435312 20 +    555799 CCACCCTGACACCAGTGTAT
s panTro4.chr4             193147381 20 + 193495092 CCACCCTGACACCAGTGTAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198220356 20 + 198332218 CCACCCTGACACAAGTGTAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113894511 20 + 115148730 CCCCCCCGACACCAGTGTAT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183810421 20 + 184069350 CCACCCTGACACCAGTGTGT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189203815 20 + 189454096 CCACCCTGACACCAGTGTGT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178622010 20 + 178775436 CCACCCTGACACCAGTGTGT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135557096 20 + 135778131 CCACCCTGACACCAGTGTGT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190665947 19 - 190850796 CCA-CCGGACACCCATGTGT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87815488 20 - 129401213 CCATCTTGACTCTGGTCTAT
i mm10.chr8                I 291 C 0
e canFam3.chr16             18114864 261 -  59632846 I

a score=2085064.000000
s hg38.chr4_KI270925v1_alt    435332 634 +    555799  
s panTro4.chr4             193147401 630 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198220376 610 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113894531 611 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183810441 603 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189203835 603 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178622030 603 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135557116 600 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190665966 609 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87815508 655 - 129401213  
i mm10.chr8                C 0 C 0
s canFam3.chr16             18115125 639 -  59632846  
i canFam3.chr16            I 261 C 0

a score=34229.000000
s hg38.chr4_KI270925v1_alt    435966 30 +    555799 CAac--acacacac----------------------actcacacactccc----acac
s panTro4.chr4             193148031 56 + 193495092 CAac--acacacactcacacacactcacacacactcacacacacactcccccacacac
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198220986 30 + 198332218 CAGC--Acacacactgacac----------------actcacac----------acac
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113895142 32 + 115148730 CAac--acactcac----ac----------------actcacacactctc----acac
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183811044 28 + 184069350 CAAA--acacacac----------------------actcacacactc------actc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189204438 28 + 189454096 CAAA--acacacac----------------------actcacacactc------actc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178622633 28 + 178775436 caaa--acacacac----------------------actcacacactc------actc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135557716 30 + 135778131 CAAAacacacacac----------------------actcacatactc------tcac
i chlSab2.chr7             C 0 I 580
s calJac3.chr3             190666575 28 - 190850796 CAac--acacacacttgtgc----------------acacacacac------------
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87816163  0 - 129401213 C
e canFam3.chr16             18115764  0 -  59632846 C

a score=12466.000000
s hg38.chr4_KI270925v1_alt    435996 17 +    555799 tca-------------cacactcacaca--ca
s panTro4.chr4             193148087 32 + 193495092 tcaacaccctcacatacacactcacacataca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198221016 19 + 198332218 tca-------------tacactcacacacact
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113895174 17 + 115148730 aca-------------cacattcacaca--ca
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183811072 17 + 184069350 tca-------------cacactcacaca--ca
i rheMac3.chr5             C 0 I 507
s macFas5.chr5             189204466 17 + 189454096 tca-------------cacactccccca--ca
i macFas5.chr5             C 0 I 14
s papAnu2.chr5             178622661 17 + 178775436 tca-------------cacactccccca--ca
i papAnu2.chr5             C 0 I 14
s calJac3.chr3             190666603 13 - 190850796 ttg-------------cacacacaga------
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87816163  0 - 129401213 C
e canFam3.chr16             18115764  0 -  59632846 C
e chlSab2.chr7             135557746 580 + 135778131 I

a score=9959.000000
s hg38.chr4_KI270925v1_alt    436013 33 +    555799 ctcacacact-cacacgcactc----acacactccca--------c
s panTro4.chr4             193148119 44 + 193495092 ctcacacact-cacacacacac-ccaacacactcacatacacactc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198221035 37 + 198332218 cccacacact-tgcacacacacactcacacactccca--------c
i ponAbe2.chr4             C 0 I 167
s nomLeu3.chr7b            113895191 33 + 115148730 ctctcacact-cacacactcac----atacactcaca--------c
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189204497 37 + 189454096 ctcacacactccacacacactc-cctacacacaccct--------c
i macFas5.chr5             I 14 C 0
s papAnu2.chr5             178622692 37 + 178775436 ctcacacactccacacacactc-cctacacacaccct--------c
i papAnu2.chr5             I 14 C 0
s calJac3.chr3             190666616 27 - 190850796 cttgcacacg-cacacactcac----acatgc--------------
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18115764  5 -  59632846 CCTAC-----------------------------------------
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87816163  0 - 129401213 C
e chlSab2.chr7             135557746 580 + 135778131 I
e rheMac3.chr5             183811089 507 + 184069350 I

a score=-9944.000000
s hg38.chr4_KI270925v1_alt    436046 31 +    555799 agactcacacactca------------------------------cactctcacacactcc
s panTro4.chr4             193148163 61 + 193495092 agacacacacactcagacacgcacacacactcccacagactcacacacactcacacactcc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198221239 20 + 198332218 --------acactca------------------------------cacactcacata---c
i ponAbe2.chr4             I 167 C 0
s nomLeu3.chr7b            113895224  6 + 115148730 ----------------------------------------------------acaca---c
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189204534 26 + 189454096 ------acacacaca--------------------------cactcactctcacaca---c
i macFas5.chr5             C 0 I 6
s papAnu2.chr5             178622729 22 + 178775436 ------acatacaca------------------------------cactctcacaca---c
i papAnu2.chr5             C 0 I 490
s calJac3.chr3             190666643 20 - 190850796 --------agactcc------------------------------cacgctcgcaca---c
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18115769  3 -  59632846 ------------------------------------------------------AGA----
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87816163  0 - 129401213 C
e chlSab2.chr7             135557746 580 + 135778131 I
e rheMac3.chr5             183811089 507 + 184069350 I

a score=19749.000000
s hg38.chr4_KI270925v1_alt    436077 36 +    555799 acacacacac--accc----acacacgctcacgcatacactc
s panTro4.chr4             193148224 42 + 193495092 acacacacactcacccccacacacacgctcatgcatacactc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198221259 37 + 198332218 acacacactc---cccccacacacacgcttatgcatata--c
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113895230 37 + 115148730 acacacactc---ccccc--acacatgctcatgcatacacac
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189204566 36 + 189454096 acagactccc---cccc---acacacattcatacactcactc
i macFas5.chr5             I 6 I 1
s papAnu2.chr5             178623241 34 + 178775436 acacacacat---tccc---acacactcccacatacacac--
i papAnu2.chr5             I 490 C 0
s calJac3.chr3             190666663 30 - 190850796 acacgaacac---atgt---acacacacTCGTGCAC------
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87816163  0 - 129401213 C
e canFam3.chr16             18115772  0 -  59632846 C
e chlSab2.chr7             135557746 580 + 135778131 I
e rheMac3.chr5             183811089 507 + 184069350 I

a score=13522.000000
s hg38.chr4_KI270925v1_alt    436113 6 +    555799 acacac
s panTro4.chr4             193148266 6 + 193495092 acacac
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198221296 6 + 198332218 acacac
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113895267 6 + 115148730 acactc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183811596 6 + 184069350 acacat
i rheMac3.chr5             I 507 C 0
s macFas5.chr5             189204603 6 + 189454096 acacac
i macFas5.chr5             I 1 I 472
s papAnu2.chr5             178623275 6 + 178775436 actcac
i papAnu2.chr5             C 0 I 10
s chlSab2.chr7             135558326 6 + 135778131 acacac
i chlSab2.chr7             I 580 C 0
s calJac3.chr3             190666693 6 - 190850796 GCACAG
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87816163 0 - 129401213 C
e canFam3.chr16             18115772 0 -  59632846 C

a score=28102.000000
s hg38.chr4_KI270925v1_alt    436119 11 +    555799 tcacaTGCACA
s panTro4.chr4             193148272 11 + 193495092 tcacatgcaca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198221302 11 + 198332218 tcacatgcaca
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113895273 11 + 115148730 tcacatgcaca
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183811602 11 + 184069350 tcacgtgcaca
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189205081 11 + 189454096 tcacgtgcaca
i macFas5.chr5             I 472 C 0
s papAnu2.chr5             178623291 10 + 178775436 tcacgtgc-ca
i papAnu2.chr5             I 10 C 0
s chlSab2.chr7             135558332 11 + 135778131 tcacgtgcaca
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190666699 11 - 190850796 TCGCACGTACA
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87816163  0 - 129401213 C
e canFam3.chr16             18115772  0 -  59632846 C

a score=44718.000000
s hg38.chr4_KI270925v1_alt    436130 46 +    555799 CTTGCTTGCACACACTTACACGCACACACAATTACACACAC------TTGCA
s panTro4.chr4             193148283 44 + 193495092 tttgcttgcacacac----acgcacacacaattacacacac----acttgca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198221313 52 + 198332218 cttgcttgcacacactcacatgcacacacaattacacacacacTCACTTGCA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113895284 34 + 115148730 ctt------------------gcacacacaattacacacacactcacttgca
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183811613 40 + 184069350 cttgcttacac----------acacgcacaatcacacacacat--actcgca
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189205092 40 + 189454096 cttgcttacac----------acacgcacaatcacacacacat--actcgca
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178623301 38 + 178775436 cttgcttacac----------acacgcacaatcacacacacat--actcg--
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135558343 40 + 135778131 cttgcttacac----------acacgcacaatcacacacacat--actcgca
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             18115772 14 -  59632846 -------------------------ACACATATACACGT-------------
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87816163  0 - 129401213 C
e calJac3.chr3             190666710  0 - 190850796 C

a score=338480.000000
s hg38.chr4_KI270925v1_alt    436176 143 +    555799 AACACACACATGCTCGCACGTGCACACACACAC----AC----GCACAATCTCACTTTGCCTGTTTCCAAACTTA---AC----GTTTTCCAGCCAGTGGGTCCTCACCGGTTAAGTTAAT---GTGGAAAAGA--CTATTCTGTCATCCAGAGAACCCACAG
s panTro4.chr4             193148327 141 + 193495092 aacacacacatgctcgcacatgcacacacacac----------gcacaATCTCACTTTGCCTGTTTCCAAACTTA---AC----GTTTTCCAGCCAGTGGGTCCTCACCGGTTAAGTTAAT---GTGGAAAAGA--CTATTCTGTCATCCAGAGAACCCACAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198221365 137 + 198332218 A--ACAGACATGCTTGCAC--GCACACACACAT----------GCACAATCTCACTTTGACTGTTTCCAAACTTA---AC----GTTTTCCAGTCAGTGGGTCCTCACTGGTTACGTTAAC---GTGGAAAAGA--CTATTCTGTCATCCAGAGAACCCACAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113895318 145 + 115148730 a--actcacatgctcgcatgcacacacacacacactcac----gcacaATCTCACTTTGCCTGTTTCCAAACTTA---AT----GTTTTCCAGCCAGTGGGTCCTCACTGGTTAAGTTAAC---GTGGAAAAGA--CTATTCTGTCATCCAGAGAACCCACAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183811653 141 + 184069350 aacacacacctgttcatgcatgcgcgcacacac----ac----gcacaGTCTCACTTTGCCTGTTTCCAAACTT----AT----GCTTTCCAGCCAGTGGGTCCTCA-CCGTTAAGTTAAT---GTGGAAAAGC--CTATTCTGTCATCCAGAGAACCCACAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189205132 141 + 189454096 aacacacacctgttcatgcatgcgcgcacacac----ac----gcacaGTCTCACTTTGCCTGTTTCCAAACTT----AT----GCTTTCCAGCCAGTGGGTCCTCA-CCGTTAAGTTAAT---GTGGAAAAGC--CTATTCTGTCATCCAGAGAACCCACAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178623339 139 + 178775436 --cacacacctgctcatgcatgcgcacacacac----ac----gcacagtcTCACTTTGCCTGTTTCCAAACTT----AC----GCTTTCCAGCCAGTGGGTCCTCA-CCGTTAAGTTAAT---GTGGAAAAGC--CTATTCTGTCATCCAGAGAACCCACAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135558383 146 + 135778131 aacacacacctgctcatgcatgcacacacacac----acacatgcacaGTCTCACTTTGCCTATTTCCAAATTT----AT----GCTTTCCAGCCAGTGGGTCTTCACCCGTTAAGTTAAT---GTGGAAAAGC--CTATTCTGTCATCCAGAGAACCCACAG
i chlSab2.chr7             C 0 I 178
s mm10.chr8                 87816163 134 - 129401213 AGCGCACACATGTT----------CTCACACCC----AC----GCATGATCACACTGTCCTTCCTTCTACACTC----ACTTCGGATTTTCAGCCAGTAAGTGTCCACTGTGAAAATTAAT--AGTGGAAAAGCCACTAACCTGGAATCCCAAGAA-----AG
i mm10.chr8                C 0 C 0
s canFam3.chr16             18115786 129 -  59632846 --------------------TGCTCATACACTC----AC----ACACAGTCCCACTTTGCTACTTTCGAAACTCGTTTAT----GCATTTCAGCTAGTGAATCTTCATCTAGCAAATAAATATagcagaaaagg--ctagcctgaaattcagaaaacccaaaa
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190666710   0 - 190850796 C

a score=39759.000000
s hg38.chr4_KI270925v1_alt    436319 16 +    555799 CTCAGTGCCTGTTCTG
s panTro4.chr4             193148468 16 + 193495092 CTCAGTGCCTGTTCTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198221502 16 + 198332218 CTCAGTGCCTGTTCTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113895463 16 + 115148730 CTCAGTGCCTGTTCTG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183811794 16 + 184069350 CTTGGTGCCTGTTCTG
i rheMac3.chr5             C 0 I 1647
s macFas5.chr5             189205273 16 + 189454096 CTTGGTGCCTGTTCTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178623478 16 + 178775436 CTCGGTGCCTGCTCTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135558707 16 + 135778131 CTCGGTGCCTGTTCTG
i chlSab2.chr7             I 178 C 0
s mm10.chr8                 87816297 16 - 129401213 TGAATTACCCTCCCTG
i mm10.chr8                C 0 C 0
s canFam3.chr16             18115915 16 -  59632846 tctagcctccattgtg
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190666710  0 - 190850796 C

a score=544.000000
s hg38.chr4_KI270925v1_alt    436335  9 +    555799 AG---GACACAG------
s panTro4.chr4             193148484  9 + 193495092 TG---GACACAG------
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198221518 12 + 198332218 TGGATGACAGAG------
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113895479 12 + 115148730 TGGATGACAGAG------
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189205289  9 + 189454096 TG---GAGACAG------
i macFas5.chr5             C 0 I 756
s papAnu2.chr5             178623494  9 + 178775436 TG---GAGACAG------
i papAnu2.chr5             C 0 I 1600
s chlSab2.chr7             135558723  9 + 135778131 TG---GAGACAG------
i chlSab2.chr7             C 0 I 2
s mm10.chr8                 87816313  8 - 129401213 -G---ACCATAA------
i mm10.chr8                C 0 I 10
s canFam3.chr16             18115931 13 -  59632846 -----caaatggctaatt
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190666710  0 - 190850796 C
e rheMac3.chr5             183811810 1647 + 184069350 I

a score=4107.000000
s hg38.chr4_KI270925v1_alt    436344 3 +    555799 GCA
s panTro4.chr4             193148493 3 + 193495092 GCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198221530 3 + 198332218 GCA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113895491 3 + 115148730 GCA
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189206054 3 + 189454096 GCC
i macFas5.chr5             I 756 C 0
s papAnu2.chr5             178625103 3 + 178775436 GCC
i papAnu2.chr5             I 1600 C 0
s chlSab2.chr7             135558734 3 + 135778131 GCC
i chlSab2.chr7             I 2 C 0
s mm10.chr8                 87816331 3 - 129401213 GGA
i mm10.chr8                I 10 C 0
s canFam3.chr16             18115944 3 -  59632846 gta
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190666710 0 - 190850796 C
e rheMac3.chr5             183811810 1647 + 184069350 I

a score=264643.000000
s hg38.chr4_KI270925v1_alt    436347 103 +    555799 TGTGACTTTCAGCAAGTTGCTGACAATTTCATCATCTCATCTCTATGTAATCAGGGTGATAGG--------TTTCCAGACATGAGAGTACTGG---------------------GACTCCATGAA---CAAAGAG
s panTro4.chr4             193148496 103 + 193495092 TGTGACTTTCAGCAAGTTGCTGACAATTTCATCATCTCATCTCTATGTAATCAGGGTGATAGG--------TTTCCAGACATGAGAGTACTGG---------------------GACTCCATGAA---CAAAGTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198221533 103 + 198332218 TGTGACTTTCAGCAAGTTGCTGACAATTTCATCATCTCATCTCTATGTAATCAGGGTGATAGG--------TTTCCAGACATGAGAGTACTGG---------------------GACTCCATGAA---CAAAGAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113895494 101 + 115148730 TGTGACTTTCAGCAAGTTGCTGACAATTTCATCACCTCATCTCTACGTAATCAGGGTGATAGG--------TTTCCAGGCATGAGAGTACTGG---------------------GACTCCGTGAA---CAAAG--
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183813457 102 + 184069350 TGTGACTTTCAGCAAGTTGCTGACAATTTCATCACCTGATCTCTATGTAGTCA-GGTGGTCGG--------TTTCCAGGCATGCAAGTTCTGG---------------------GAGTCCCTGAA---CAAAGAG
i rheMac3.chr5             I 1647 C 0
s macFas5.chr5             189206057 102 + 189454096 TGTGACTTTCAGCAAGTTGCTGACAATTTCATCACCTGATCTCTATGTAGTCA-GGTGGTCGG--------TTTCCAGGCATGCAAGTTCTGG---------------------GAGTCCCTGAA---CAAAGAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178625106 102 + 178775436 TGTGACTTTCAGCAAGTTGCTGACAATTTCATCACCTGATCTCTATGTAATCA-GGTGGTCGG--------TTTCCAGGCATGCAACTTCTGG---------------------GAGTCCGTGAA---CAAAGAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135558737 102 + 135778131 TGTGACTTTCAGCAAGTTGCTGACAGTTTCATCACCTGATCTCTATGTAATCA-GGTGGTCGG--------TTTCCAGGCATGCGAGTTCTGG---------------------GAGTCCGTGAA---CAAAGAG
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87816334 118 - 129401213 TGTGACTTTCAGAATGCTGTCTAAATTTTCTTTATTTAATCTCTACGTGGAAA-GGGGGTGGG----------------CATGAGAGAGCTTGTCTCACATAGATACGAGATACGATTTGATGAAATTTAAAAAT
i mm10.chr8                C 0 C 0
s canFam3.chr16             18115947 109 -  59632846 tgtgacttttagcaagttgcctaatctttttTCATTTAATCTCT--GTATCTAAGGGCATAGACTTAAACATTTCCAGGCATGGGAGTACTGG---------------------GTCCTTACGGA---CAAAGAG
i canFam3.chr16            C 0 I 3
e calJac3.chr3             190666710   0 - 190850796 C

a score=12250.000000
s hg38.chr4_KI270925v1_alt    436450 3 +    555799 AAG
s panTro4.chr4             193148599 3 + 193495092 AAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198221636 3 + 198332218 AAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113895595 2 + 115148730 -AG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183813559 3 + 184069350 AAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189206159 3 + 189454096 AAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178625208 3 + 178775436 AAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135558839 3 + 135778131 ACG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190666710 3 - 190850796 AAG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87816452 3 - 129401213 AAG
i mm10.chr8                C 0 I 72
s canFam3.chr16             18116059 3 -  59632846 AAG
i canFam3.chr16            I 3 C 0

a score=49865.000000
s hg38.chr4_KI270925v1_alt    436453 16 +    555799 AAGACACTGAGGCAGA---
s panTro4.chr4             193148602 16 + 193495092 AAGACACCGAGGCAGA---
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198221639 16 + 198332218 AAGACACCGAGGCAGA---
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113895597 16 + 115148730 AAGACACCGAGGCAGA---
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183813562 16 + 184069350 AAGATACTGAGGCAGA---
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189206162 16 + 189454096 AAGATACTGAGGCAGA---
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178625211 16 + 178775436 ACGATACTGAGGCAGA---
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135558842 16 + 135778131 ACGACACTGAGGCAGA---
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190666713 16 - 190850796 AAAACACCGAGGCAGA---
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18116062 19 -  59632846 AAGACACTGAAAGAGAAAA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87816455 72 - 129401213 I

a score=454029.000000
s hg38.chr4_KI270925v1_alt    436469 140 +    555799 AAATAAGAACC----------AAAGTACAAGAAGTGAAGATTAAAGTTCATCTCGCTCATTCAGAATCCTGGCCTC-GAGAGAACTGCAGATGGAGTCCAAGGGGCTCCACCACTAGAGTAAGAGTTAACGTTTCTGTTTCCATTAGGAAC-
s panTro4.chr4             193148618 140 + 193495092 AAATAAGAACC----------AAAGTACAAGAAGTGAAGATTAAAGTTCATCTCGCTCATTCAGAATCCTGGCCTC-GTGAGAGCTGCAGATGGAGTCCAAGGGGCTCCACCACTAGAGTAAGAGTTAACGTTTCTGTTTCCATTAGGAAC-
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198221655 140 + 198332218 AAATAAGAACC----------AAAGTACAAGAAGTGAAGATTAAAGTTCATCTCGCTCATTCAAAATCCTGGCCTC-GTGAGAACTGCAGATGGAGTCCAAGGGGCTCCATCACTAGAGTAAGAGTTAACGCTTCTATTTCCATTAGGAAC-
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113895613 140 + 115148730 AAATAAGAACC----------AAAGTACAAGAAGTGAAGATTAAAGTTCATCTCGCTCATTCAAACTCCTGGCCTC-CTGAGAACCCCAGATGGAGTCCAAGGGGCTCCACCACTAGAGTAAGAGTTAACGCTTCTCTTTCCATTAGGAAT-
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183813578 140 + 184069350 AAACGAGAACC----------AAAGTACAAGAAGTGAAGATTAAAGTTCATCTTGCTCATCCAAAATCCTGGCCTC-GTGAGCACTTGAGGTGGAGTCCAAGGAGCTCCCCCACTAGGGTAAGAGGTAACGTTTCAGTTTCCATTAGGAAC-
i rheMac3.chr5             C 0 I 19
s macFas5.chr5             189206178 140 + 189454096 AAACGAGAACC----------AAAGTACAAGAAGTGAAGATTAAAGTTCATCTTGCTCATCCAAAATCCTGGCCTC-GTGAGCACTTGAGGTGGAGTCCAAGGAGCTCCCCCACTAGGGTAAGAGGTAACGTTTCCGTTTCCATTAGGAAC-
i macFas5.chr5             C 0 I 6
s papAnu2.chr5             178625227 140 + 178775436 AAACGAGAACC----------AAAGTACAAGAAGTGAAGATTAAAGTTCATCTTGCTCATCCAAAATCCTGGCCTC-GTGAGCACTTGAGGTGGAGTCCAAGGAGCTCCCCCACTAGGGTAAGAGGTAACGTTTCCGTTTCCATTAGGAAC-
i papAnu2.chr5             C 0 I 6
s chlSab2.chr7             135558858 140 + 135778131 AAACGAGAACC----------AAAGTACAAGAAGTGAAGATTAAAGTTCATCTTGCTCATCCAAAATCCTGGCCTC-GTGAGCACTTGAGGTGGAGTCCAAGGAGCTCCCCAACTAGGGTAAGAGGTAACGTTTCCGTTTCCATTAGGAAC-
i chlSab2.chr7             C 0 I 19
s calJac3.chr3             190666729 138 - 190850796 ACACGAGAACC----------AAAGTATAAGAAGTGAAGATGAAAGTTCATCTCACTCATTCAAATTCCTGGCCTTGGGGAGCACTCCAGATGGAGTCT-AGGGACTCCGCCACCAGAGTAGCAGCTGACATTT--GTTTCCATTAGGAAC-
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87816527 128 - 129401213 AAATAAATACTATTTAGTTTAAATGAAGGAAAAGTAAGAACCAAAGTACATC---------AAAATTGCTGGCCTT-GTGGATACTACTAATAGAGCCC-------------ACTTGATCTGGCCTTGACATTCCTATTTCCATTAGAAAC-
i mm10.chr8                I 72 I 1
s canFam3.chr16             18116081 140 -  59632846 AAATGAGAACC----------AATGTACAATAAATGAAGAATGAAGTTCATCTAATTGATTCAAAACCCTGGCCTT-GTAGGCAAACTAGCTGGAGCCCCATG-GTTAGGCCACCAGAGATGTGGTCCACGTTCCTGTTTCCACCAGGAGCC
i canFam3.chr16            C 0 C 0

a score=18145.000000
s hg38.chr4_KI270925v1_alt    436609 10 +    555799 GGCAGGCTGA
s panTro4.chr4             193148758 10 + 193495092 GGCAGGCTGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198221795 10 + 198332218 GGCAGGCTGA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113895753 10 + 115148730 GGCGGGCTGA
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189206324 10 + 189454096 GGAAAGTTGG
i macFas5.chr5             I 6 I 3
s papAnu2.chr5             178625373 10 + 178775436 GGAATGTTGG
i papAnu2.chr5             I 6 I 3
s calJac3.chr3             190666867 10 - 190850796 AGCGGGCTGG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87816656 10 - 129401213 GACAGACTGA
i mm10.chr8                I 1 C 0
s canFam3.chr16             18116221 10 -  59632846 ATCAGGCTGA
i canFam3.chr16            C 0 C 0
e chlSab2.chr7             135558998 19 + 135778131 I
e rheMac3.chr5             183813718 19 + 184069350 I

a score=644366.000000
s hg38.chr4_KI270925v1_alt    436619 206 +    555799 TGC-CC-GGGCAGATCATTCTGAGGAGAACACTCGCTACTCTCCTCCAAAAGAAGCCGCCCAAAAAA--------AGGGGGAGGCAGGAGGCTGACGAG-GTCCTGG-GTGTCTTCCTCTCCCCC--AAGTCTTCTGAACTGCTTTCACCCGTG-C-CCAGCGGCCTCTTCTTCTGGTCTCCCCTCCAGGTCCTAACTGTTGCTAGCAATCCCCTGCTATGA
s panTro4.chr4             193148768 205 + 193495092 TGC-CC-GGGCAGATCATTCTGAGGAGAACACCCACTACTCTCCTCCAAAAGAAGCCGCCCAAAAAA---------GGGGGAGGCAGGAGGCTGACGAG-GCCCTGG-GTGTCTTCCTCTCCCCC--GAGTCTTCTGAACTGCTTTCACCCGTG-C-CCCGCGGCCTCTTCTTCTGGCCTCCCCTCCAGGTGCTAACTGTTGCTAGCAATCCCCTGCTATGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198221805 205 + 198332218 TGC-CC-GGGCAGATCATTCTGAGGAGAACACCTGCTACTCTCCTCCAACAGAAGCCTCCCAAAAAA---------GGGGGAGGCAGGAGGCTGACGAG-GTCCTGG-GTGTCTTCCTCTCCCGC--AAGTCTTCTGAACTACTTTCACCAGAG-C-CCAGCGGCCTCTTCTTCTGGCCTCCACTCCAGGTCCTAACTGTTGCTAGCAATCCCCTGCTATGA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113895763 203 + 115148730 TGC-CC-GGGCAGATCATTCT---GAGAACACCCGCTACTCTCCTCCAAAAGAAGCCTCCCAAAAAA---------GGGGGAGGCGGGAGGCTGACGAG-ATCCTGGAGTGTTTTCCTTTCCCCC--AAGTCTTCTGAATTGCTTTTACCGGTG-C-CCAGCGGCCTGTTCTTCTGGCCTCCCCTCCAGGTCCTAACTGTTGCTAGCAATCCCCTGCTATGA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183813737 202 + 184069350 TGC-CC-CGGCAGATCATTCT---GCAAATACCCGCTGCTCTCCTCCAAAGGAAGCCTCCCAAAAAA---------GGGGGAGGCGGGAGGCTGACGAG-GTCCTGG-GTGTCTTCCTTCCCCCC--AGGTCTTCTGAATTGCTGTCACCAGTG-C-CCAGCGGCCTCTTTTTCTGGCCTTCCCTCCAGGTCCTGACTGTTGCTAGCAATCCCCTGCTATGA
i rheMac3.chr5             I 19 C 0
s macFas5.chr5             189206337 202 + 189454096 TGC-CC-CGGCAGATCATTCT---GCAAATACCCGCTGCTCTCCTCCAAAGGAAGCCTCCCAAAAAA---------GGGGGAGGCGGGAGGCTGACGAG-GTCCTGG-GTGTCTTCCTTCCCCCC--AGGTCTTCTGAATTGCTGTCACCAGTG-C-CCAGCGGCCTCTTTTTCTGGCCTTCCCTCCAGGTCCTGACTGTTGCTAGCAATCCCCTGCTATGA
i macFas5.chr5             I 3 C 0
s papAnu2.chr5             178625386 202 + 178775436 TGC-CC-CGGCAGATCATTCT---GCAAATACCCGCTGCTCTCCTCCAAAGGAAGCCTCCCAAAAAA---------GGGGGAGGCGGGAGGCTGACGAG-GTCCTGG-GTGTCTTCCTTCCCCCC--AAGTCTTCTGAATTGCTGTCACCAGTG-C-CCAGCGGCCTCTTTTTCTGGCCTTCCCTCCAGGTCCTGACTGTTGCTAGCAATCCCCTGCTATGA
i papAnu2.chr5             I 3 C 0
s chlSab2.chr7             135559017 202 + 135778131 TGC-CC-CGGCAGATCATTCT---GCGAATACCCGCTGCTCTCCTCCAAAGGAAGCCTCCCAAAAAA---------GGGGGAGGCGGGAGGCTGACGAG-GTCCTGG-GTGTCTTCCTTCCCCCC--AAGTCTTCTGAATTGCTGTCACCAGTG-C-CCAGCGGCCTCTTTTTCTGGCCTTCCCTCCAGGTCCTGACTGTTGCTAGCAATCCCCTGCTATGA
i chlSab2.chr7             I 19 C 0
s calJac3.chr3             190666877 194 - 190850796 TGC-CC-AGGCAGATCACTCTGAGGAGAGCACCCACTGCTCTCCTCCGAAAGAAGCCTTCCAAAAAT---------GGGGGATGCGGGAGGCTGAGGAG-GTCCTGG-GTGTCTTCCTTTCCCCC--AAGTCTTCTGAATTGCTTTCACCAATA-C-CCAGCAGCCTCTTCTTCTGGCCTT-----------CTAACGGTTGCTGGCAATCCCCTGCTATGA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87816666 131 - 129401213 TGC-CCTGGGTAGATTCCTTT---GA-----------------------------------AAAGAA------------------------------------CAGA-GCATCTACTACTCC-----------TCTGAATAGCTG---CCAATGTC-CCTGAAGCCTTTTCTGCTGTCATTCCATTCAGGTTCTAACTGTTGCTAACAATATCCTGTTGTTA
i mm10.chr8                C 0 C 0
s canFam3.chr16             18116231 219 -  59632846 TGCTCC-AGGGGGATCAGTATGAGAAGAGTACCTGCTACTCTCTTCCAAAAGAAGCCTTCAAAAAAATAAATAAATAAAAGAACAAGGGGTCAGAGGAGAGTCCTGA-ATGCCCTCTTTTCCCCCTAATGTCTTCTGAATGCCTTTCCGCAGTG-CTCCAGCAGCCTTTTCTGTTAGCCTACCAACCTGGTTACAGCTGTCTCTAGCTATTCTGGGCTATTG
i canFam3.chr16            C 0 C 0

a score=8632.000000
s hg38.chr4_KI270925v1_alt    436825 3 +    555799 TGG
s panTro4.chr4             193148973 3 + 193495092 TGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198222010 3 + 198332218 TGG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113895966 3 + 115148730 TGG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183813939 3 + 184069350 TAg
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189206539 3 + 189454096 TAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178625588 3 + 178775436 TAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135559219 3 + 135778131 TAg
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190667071 3 - 190850796 TAG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87816797 3 - 129401213 CGG
i mm10.chr8                C 0 I 8160
e canFam3.chr16             18116450 0 -  59632846 C

a score=1648999.000000
s hg38.chr4_KI270925v1_alt    436828 644 +    555799  
s panTro4.chr4             193148976 641 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198222013 646 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113895969 640 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183813942 619 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189206542 619 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178625591 621 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135559222 671 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190667074 617 - 190850796  
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87816800 8160 - 129401213 I
e canFam3.chr16             18116450   0 -  59632846 C

a score=2856089.000000
s hg38.chr4_KI270925v1_alt    437472 973 +    555799  
s panTro4.chr4             193149617 982 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198222659 974 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113896609 970 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183814561 963 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189207161 962 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178626212 968 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135559893 964 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190667691 927 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18116450 976 -  59632846  
i canFam3.chr16            C 0 I 238
e mm10.chr8                 87816800 8160 - 129401213 I

a score=115732.000000
s hg38.chr4_KI270925v1_alt    438445 42 +    555799 gcttaagtagtgtgcttcaattctcacagcttgtctagac-cg
s panTro4.chr4             193150599 42 + 193495092 gcttaagtagtgtgcttcaattctcacagcttgtctagac-ca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198223633 43 + 198332218 gcttaagtagtgtgcttcaattctcacagcttgtctagacaaa
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113897579 43 + 115148730 gcttaagtaatgtgcttcaattctcacagcttgtctagaccaa
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183815524 42 + 184069350 gcttaagtaatgtgcttcaactctcacagcttgtctagac-ca
i rheMac3.chr5             C 0 I 8
s macFas5.chr5             189208123 42 + 189454096 gcttaagtaatgtgcttcaactctcacagcttgtCTAGAC-CA
i macFas5.chr5             C 0 I 1
s papAnu2.chr5             178627180 41 + 178775436 GCTTAAGTAATGTGCTTCAACTCTCACAGCTTGTCTAGAC-C-
i papAnu2.chr5             C 0 I 2
s chlSab2.chr7             135560857 42 + 135778131 gcttaagtaatgtgcttcaactctcacagcttgtCTAGAC-CA
i chlSab2.chr7             C 0 I 8
s calJac3.chr3             190668618 42 - 190850796 gcttaagtgatgtgctcaaattctcaaagcttgcccagac-cc
i calJac3.chr3             C 0 I 1
e mm10.chr8                 87816800 8160 - 129401213 I
e canFam3.chr16             18117426 238 -  59632846 I

a score=5443.000000
s hg38.chr4_KI270925v1_alt    438487 5 +    555799 gactc
s panTro4.chr4             193150641 5 + 193495092 ggctc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198223676 5 + 198332218 gactc
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113897622 5 + 115148730 gactc
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189208166 5 + 189454096 GAATT
i macFas5.chr5             I 1 C 0
s papAnu2.chr5             178627223 5 + 178775436 GAATT
i papAnu2.chr5             I 2 C 0
s calJac3.chr3             190668661 5 - 190850796 ggctc
i calJac3.chr3             I 1 C 0
e mm10.chr8                 87816800 8160 - 129401213 I
e canFam3.chr16             18117426 238 -  59632846 I
e chlSab2.chr7             135560899 8 + 135778131 I
e rheMac3.chr5             183815566 8 + 184069350 I

a score=2186.000000
s hg38.chr4_KI270925v1_alt    438492 18 +    555799 aaatgcagatccgtcaca
s panTro4.chr4             193150646 18 + 193495092 aaatgcagatacgtcaca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198223681 18 + 198332218 aaatgcagatctgtcaca
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113897627 18 + 115148730 aaatgcagatctgtcaca
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189208171  2 + 189454096 AA----------------
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178627228  2 + 178775436 AA----------------
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190668666 16 - 190850796 aaaggcagctctgtcc--
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18117664 14 -  59632846 AAACATAAATCTGA----
i canFam3.chr16            I 238 C 0
e mm10.chr8                 87816800 8160 - 129401213 I
e chlSab2.chr7             135560899  8 + 135778131 I
e rheMac3.chr5             183815566  8 + 184069350 I

a score=635138.000000
s hg38.chr4_KI270925v1_alt    438510 187 +    555799 gcctaaagctgaggttccagccaccacaccgagctgtcTTCAGTCAAGAGTTAA--CTCATCTCTCCCCAGAGCCATTGTCCTGAAGAtgcgaatataatgatgatgaaatgt--gtccctctccttcaagaaaatcagagtctagtggacagggaaggacatataagtagCTACTAACTTGTGATGTGCT
s panTro4.chr4             193150664 187 + 193495092 gcctaaagctgaggttccagccaccacaccgtgctgtcTTCAGTCAAGAGTTAA--CTCATCTCTCCCCAGAGCCATTGTCCTGAAGAtgcgaatataatgatgatgaaatgt--gtacctctccttcaagaaaatcagagtctagtggacagggagggacatataagtagccaCTAAATTGTGATGTGCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198223699 187 + 198332218 gcctaaagcttaggttccagccaccacaccgtgctgtcTTCAGTCAAGAATTAA--CTCATCTCTCCCCAGAGCAATTGTCCTGAAGAtgcgaatataacgatgatgaaatgt--gtacctctccttcaagaaaatcagagtctagtggaaagggagggacatataagtagCTACTAAATTGTGATGTGCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113897645 187 + 115148730 gcctaaagcttaggttccagccaccacaccgtgctgtcTTCAGTCAAGAGTTAA--CTCATCTCTCCCCAGAGCAATTGTCCTGAAGATGCGAATATAATGATGATGAAATGT--GTACCTCTCCTTCAAGAAAATCAGAGTCTAGTGGAAAGGGAGGGACATATAAGTAGCTACTAAATTGTGATGTGCT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183815574 187 + 184069350 gcctaaagccgaggttccagccaccacaccgtgctgtcttcagtcaAGAGTTAA--CTCATCTGTCCCCAGAGCAATTgtcctgaagatgcgaagataatgatgatgaaatgt--gtacctctccttcaagaaaatcagagtctagtggaaagggagcgacatataagtagccaCTAAATTGTGATGTGCT
i rheMac3.chr5             I 8 C 0
s macFas5.chr5             189208173 187 + 189454096 GCCTAAAGCCGAGGTTCCAGCCACCACACCGTGCTGTCTTCAGTCAAGAGTTAA--CTCATCTGTCCCCAGAGCAATTgtcctgaagatgcgaagataatgatgatgaaatgt--gtacctctccttcaagaaaatcagagtctagtggaaagggagcgacatataagtagccaCTAAATTGTGATGTGCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178627230 187 + 178775436 GCCTAAAGCCGAGGTTCCAGCCACCACACCGTGCTGTCTTCAGTCAAGAGTTAA--CTCATCTGTCCCCAGAGCAATTGTCCTGAAGATGTGAAGATAATGATGATGAAATGT--GTACCTCTCCTTCAAGAAAATCAGAGTCTAGTGGAAAGGGAGCGACATATAAGTAGCCACTAAATTGTGatgtgct
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135560907 187 + 135778131 GCCTAAAGCCAAGGTTCCAGCCACCACACTGTGCTATCTTCAGTCAAGAGTTAA--CTCATCTCTCCCCAGAGCAATTgtcctgaagatgcgaagataatgatgatgaaatgt--gtacctctccttcaagaaaatcagagtctagtggaaagggagcgacatataagtagccactaaattgtgatgtgtt
i chlSab2.chr7             I 8 C 0
s calJac3.chr3             190668682 187 - 190850796 gcctaaagcgtaggatccagacaccacaccacgctgctctcgGTAAAGCGTTAA--CTCATCTCTCCCCAGAGTAACTGTCCTGAGGAGGTGAAGACAATGATGATGAAGCCT--GTACCTCTCCTTCAAGAAAATCGGGGTGTAGTGGAAGGATAGAGACATATAAGCAGCCACTAAATTGTGATGTGCT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18117678 183 -  59632846 GCCCAAAGCTTACACTCTG---ACCATACCATGCTGTTCTCAGCAAAGCGCTCATTTTTGTCCCTTCCCAGGGTAATTgttctaaggatacaaaaataatgataatgaaatgtagatcccccccccccaagaaaatc--agtctagtggatggagagagacaT---AATGGCCATTAAAATGGAATGTGCT
i canFam3.chr16            C 0 I 408
e mm10.chr8                 87816800 8160 - 129401213 I

a score=50604.000000
s hg38.chr4_KI270925v1_alt    438697 18 +    555799 GAAAATAAAATAGCGTCA
s panTro4.chr4             193150851 18 + 193495092 GAAAATAAAATAGTGTCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198223886 18 + 198332218 AAAAATAAAATAGTGTCA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113897832 18 + 115148730 AAAAATAAAATAGTGTCA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183815761 18 + 184069350 AAAAATAAAATAGTGTCA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189208360 18 + 189454096 AAAAATAAAATAGTGTCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178627417 18 + 178775436 aaaaataaaatagtgtca
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135561094 18 + 135778131 aaaaataaaatagtgtca
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190668869 18 - 190850796 AAAAAGAAAATCCAGTCA
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87816800 8160 - 129401213 I
e canFam3.chr16             18117861 408 -  59632846 I

a score=31993.000000
s hg38.chr4_KI270925v1_alt    438715 14 +    555799 TTATAAATAA---ACAA
s panTro4.chr4             193150869 14 + 193495092 TTATAAATAA---ACAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198223904 14 + 198332218 TTATAAATAA---ACAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113897850 14 + 115148730 TTATAAATAA---ACGA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183815779 17 + 184069350 CTATAAATATGATACAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189208378 17 + 189454096 CTATAAATATGATACAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178627435 17 + 178775436 CTATAAATATGATACAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135561112 17 + 135778131 ctataaatacgatacAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190668887 17 - 190850796 CTCCAAATAAGACACAA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18118269 14 -  59632846 tcatgaataa---ataa
i canFam3.chr16            I 408 C 0
e mm10.chr8                 87816800 8160 - 129401213 I

a score=1791787.000000
s hg38.chr4_KI270925v1_alt    438729 539 +    555799  
s panTro4.chr4             193150883 539 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198223918 573 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113897864 569 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183815796 540 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189208395 540 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178627452 539 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135561129 539 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190668904 556 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87824960 510 - 129401213  
i mm10.chr8                I 8160 C 0
s canFam3.chr16             18118283 574 -  59632846  
i canFam3.chr16            C 0 C 0

a score=379695.000000
s hg38.chr4_KI270925v1_alt    439268 135 +    555799 TTTATTACTGAAATTATGATTCATTAAGTAATAAAAATCTGCTTGGAACATGCAAAA---GGAATAAGCTCCTCATTGTTTCAAAGCGTCTTTGCGGATTTTATTGTGCTCTTTTAGGAATAATTTTTTTCTCTTCTA
s panTro4.chr4             193151422 135 + 193495092 TTTATTACTGAAATTATGATGCATTAAGTAATAAAAATCTGCTTGGAACATGCAAAA---GGTATAAGCTCCTCATTGTTTCAAAGCGTCTTTGCGGATTTTATTGTGCTCTTTTAGGAATAATTTTTTTCTCTTCTA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198224491 135 + 198332218 CTTATTACTGAAATTATGATTCATTAAGTAATAAAAATCTGCTTGGAACATGCAAAA---GGAATAAGCTCCTCATTGTTTCAAAGCATCTTTGCTGATTTTATTGTGCTCTTTTAGGAACAATTTTTTTCTCTTCTA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113898433 134 + 115148730 TTTATTACTGAAATTATGATTCATTAAGTAATAAAAATCTGTTTGGAACATGCTAAA---GGAATAAGCTCCTCATTGTTTCAAAGCGTCTTTGCTGATTTTATGGTGCTCTTTTTGGAGTAA-TTTTTTCTCTGCTA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183816336 135 + 184069350 TTTATTACTGAAATTATGATTCATTAAGTAATAAAAATCTGCTTGGAACATGCTGAC---GGAATAAGCACTGCATTGTTTCTAAGGGTCTTTGCTGATTTTATTGTGCTCTTTTAGGAAACATTTTTTTCTCTTCTA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189208935 135 + 189454096 TTTATTACTGAAATTATGATTCATTAAGTAATAAAAATCTGCTTGGAACATGCTGAC---GGAATAAGCACTGCATTGTTTCTAAGGGTCTTTGCTGATTTTATTGTGCTCTTTTAGGAAACATTTTTTTCTCTTCTA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178627991 135 + 178775436 TTTATTACTGAAATTATAATTCATTAAGTAATAAAAATCTGCTTGGAACATGCTGAC---GGAATAAGCACTGCATTGTTTCTAAGGGTCTTTGCTGATTTTATTGTGCTCttttaggaaacatttttttctcttcta
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135561668 135 + 135778131 TTTATTACTGAAATTATGATTCATTAAGTAATAAAAATTTGCTTGGAACATGCTGAT---GGAATAAGTGCTGCATTGTTTCTAAGGGTCTTTGCTGATTTTATTGTGCTCTTTTAGGAAAAATTTTTTTCTCTTCTA
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87825470 134 - 129401213 GTTATTACTGGTCATTTGATGAGTACAATAGTAAGACTCTGCCTCAAATGTTCTAAAAATAAAATAAACTCTGTTTCGTTCT----GGTCTCATTGTGCTGTCTTGTACTGTCTTAGGGATTTTTTTTCTTCCTTTTA
i mm10.chr8                C 0 C 0
s canFam3.chr16             18118857 134 -  59632846 TTCATTGCTAAAATTAGGAATAGCAAAGTAATAAGAATCTACTTGGAACATGCTCAA---GAAATAAGTTCCACATTGTTTCAAAGTTCCTCTTCTGACTTTATTGTG-TCTTTTAGGGATAATTTTTTTTTCTCTTG
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190669460   0 - 190850796 C

a score=246401.000000
s hg38.chr4_KI270925v1_alt    439403 72 +    555799 --TTGAAAAAGAA-CCATCTCTATGAAACCATGTGGACCAATAAATTATTCATGTATATCCATCATTTTAGGTT------A
s panTro4.chr4             193151557 72 + 193495092 --TTGAAAAAGAA-CCATCTCTATGAAACCATGTGGACCAATAAATTATTCATGTATATCCATCATTTTAGGTT------A
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198224626 72 + 198332218 --TTGAAAAAGAA-CCATCTCTATGAAACTATCTGGACCAATAAATTATTCATGTATATCCATCATTTTAGGTT------A
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113898567 72 + 115148730 --TTGAAAAAGAA-CCATCTCTATGAAACTATGTGGACCAATAAATTATTCATGCATATCCATCATTTTAGGTT------A
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183816471 72 + 184069350 --TTGAAAAAGAA-CCATCTCTATGAAACTACGTGGACCAATAAATTATTCATGTATAGCCATCATTTTAGGTT------A
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189209070 72 + 189454096 --TTGAAAAAGAA-CCATCTCTATGAAACTACGTGGACCAATAAATTATTCATGTATAGCCATCATTTTAGGTT------A
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178628126 72 + 178775436 --ttgaAAAAGAA-CCATCTCTATGAAACTACGTGGACCAATAAATTATTCATGTATAGCCATCATTTTAGGTT------A
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135561803 71 + 135778131 --TT-AAAAAGAA-CCATCTCTATGAAACTACGTGGACCAATAAATTATTCATGTATAGCCATCATTTTAGGTT------A
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190669460 66 - 190850796 --TTGAAAAAGAA-CCATCTCTGTGAAACT--GTTAACCAACAAATT----ATGTATATCCATCATTTTAAGTT------A
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87825604 76 - 129401213 --TAGGAAAGGAA---ATCTCTAGGAAACTATATTGACCAATAACTTATTCGTGGATCACCATCACGTTAAGCTGAATAAA
i mm10.chr8                C 0 C 0
s canFam3.chr16             18118991 66 -  59632846 TATAGAAAGAAAAGTTGTCTCTCT---------TTGATCACTAACTTACATACATACATCCACTATTTTAGATT------A
i canFam3.chr16            C 0 I 198

a score=1847656.000000
s hg38.chr4_KI270925v1_alt    439475 556 +    555799  
s panTro4.chr4             193151629 558 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198224698 558 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113898639 560 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183816543 561 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189209142 561 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178628198 561 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135561874 559 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190669526 555 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87825680 544 - 129401213  
i mm10.chr8                C 0 C 0
s canFam3.chr16             18119255 521 -  59632846  
i canFam3.chr16            I 198 I 122

a score=306666.000000
s hg38.chr4_KI270925v1_alt    440031 114 +    555799 CT-AGC---------------------------------------CTGAGTAATACGCCATCTTACCC-CTT--------CTTAGGACTTTCACGTGGGCTGGCATCATCTC-CCC-A-TTACATTGCACAATTCAAGGGCAAGGACTCTGTCTCCCAGTTTCTTT
s panTro4.chr4             193152187 114 + 193495092 CT-AGC---------------------------------------CTGAGTGATACGCCATCTTACCC-CTT--------CTTAGGACTTTCACGTGGGCTGGCATCATCTC-CCC-A-CTACATTGCACAATTCAAGGGCAAGGACTCTGTCTCCCAGTTTCTTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198225256 112 + 198332218 CT-AGC---------------------------------------CTGAGTGATACACCATCTTACCC-CTT--------CTTAGGACTTTCACATGGGCTGGCATCATCT---CC-G-TTATATTGCACAATTCAAGGGCAAGGACTCTGTCTCCCAGTTTCTTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113899199 114 + 115148730 CT-AGC---------------------------------------CTGAGTGATACACCATCTTACCC-CTT--------CTTAGGACTTTCATGTGGGCTGGCATCATCTC-CCC-A-TTACATTGCACAATTCAAGGGCAAGGACTCTGTCTCCCAGTTTCTTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183817104 113 + 184069350 CT-AGC---------------------------------------CTGCGTGATACACCATCTTACAC-CTG--------CTTAGGACTTCCACGTGGGCTGGCATCATCTC-TCC-G-TTACACTGCACACTTCCAGGGCAAGGACTCTGCCT-CCAGTTTCTAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189209703 113 + 189454096 CT-AGC---------------------------------------CTGCGTGATACACCATCTTACAC-CTG--------CTTAGGACTTCCACGTGGGCTGGCATCATCTC-TCC-G-TTACACTGCACACTTCCAGGGCAAGGACTCTGCCT-CCAGTTTCTTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178628759 113 + 178775436 CT-AGC---------------------------------------CTGCGTGATACACCATCTTACAC-CTG--------CTTAGGACTTCCACGTGGGCTGGCATCATCTC-TCC-G-TTACACTGCACACTTCCAGGGCAAGGACTCTGCCT-CCAGTTTCTTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135562433 113 + 135778131 CT-AGC---------------------------------------CTATGTGATACACCATCTTATAC-CTT--------CTTAGGACTTCCACGTGGGCTGGCATCATCTC-TCT-G-TTACACTGCACACTTCCAGGGCAAGGACTCTGCCT-CCAGTTTCTTT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190670081 105 - 190850796 GT-CAC---------------------------------------CTGAGTGACACATCAT-------------------CTTAGGATTCTCATGTGGGCCGGCATCATCTC-CCCGG-TTACACCGCACACTTGAAGAGCAAAGACCCTGTCTCCCAGTTTCTTC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87826224 115 - 129401213 CTAAGT---------------------------------------ATCCTTTGCATTCTTTTCTACCC-CGTGGCATCCACTTTGAATTTCT---TATTCTCGTTCCACCTCATCC-A-TAATGTT------TTCCTAAGCCAGGCCTATCTCCACTGGTCTTTTT
i mm10.chr8                C 0 I 237
s canFam3.chr16             18119898 155 -  59632846 CT-AACTTAAATTATACTCCTAATCTTCAATAAAGAAATCTAATTCTGAATGATAAACTCTCTTATATGATC--------CTTAGTACTTTCATGTGGGTTGGCATCAATTC-CCC-ATTTATATTGTAAACTTCAAGGGCAAGGTTTGTTTATTCCTATTTCTTT
i canFam3.chr16            I 122 C 0

a score=352647.000000
s hg38.chr4_KI270925v1_alt    440145 109 +    555799 GTTTACCTCGCTATACCTAGCATGCTAGGAAATGATT--AGACATGTATATTGTATCTAAACTTGTAGTATAATACACCCATTTTATAAAGATTTGAGTTCAGttt---tctct
s panTro4.chr4             193152301 109 + 193495092 GTTTACCTCGCTATACCTAGCACGCTGGGAAATGATT--AGACATGTATATTTTATCTAAACTTGTAGTATAATACACCCATTTTATAAAGAATTGAGTTCAGttt---tctct
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198225368 109 + 198332218 GTTTACCTCGCTATACCTAGCATGCTGGGAAATGATT--AGACATGTATATTTTATCTAAACTTGTAGTATAATACACCTATTTTATAAGAATTTGAGTTCAGTCT---TCTCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113899313 112 + 115148730 GTTTGCCTCGCTATACCTAGCATGCTGGGAAATGATT--AGACATGTATATTTTATCTAAACTTGTAGTATAATACACACATTTTATAAAGATTTGAGTTCAGTAGAGAAAACt
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183817217 109 + 184069350 GTTTACCTCGCTATACCTAGCACGCTGGGAAATGACT--AGGCATGTGTATTTTATCTAAACTTGCAGTATAATACATGCATTTTATAAAGATTTGAGTTCAGTTT---TCTCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189209816 109 + 189454096 GTTTACCTCGCTATACCTAGCACGCTGGGAAATGACT--AGGCATGTGTATTTTATCTAAACTTGCAGTATAATACATGCATTTTATAAAGATTTGAGTTCAGTTT---TCTCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178628872 109 + 178775436 GTTTACCTCGCTATACCTAGCACGCTGGGAAATGACT--AGGCATGTATATTTTATCTAAACTTGCAGTATAATACATGCATTTTATAAAGATTTGAGTTCAGTTT---TCTCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135562546 109 + 135778131 GTTTACCTCGCTATACCTAGCACGCTGGGAAATGACT--AGGCATGTGCATTTTATCTAAACTTGCAGTATAATATATGCATTTTATAAAGATTTGAGTTCAGTTT---TCTCT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190670186 109 - 190850796 GTTCATCTCACTATACCTAGCATGCTGGGAAATTATT--AGGCACATGTATTTTATCTAAACTTGTAGTATAACACACGCATTTTATAAAGATTTGAGTTCCATTT---TCTCA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18120053 111 -  59632846 ACTTATTTCTTTATACCTAGCAGAGCAGGTAATTATTAAAGACATTTATATTTTATTTAAGTTTATTGTATAATGTACTCATGTCATAAAGATTAGATTTCAATCA---TTTCT
i canFam3.chr16            C 0 I 298
e mm10.chr8                 87826339 237 - 129401213 I

a score=687516.000000
s hg38.chr4_KI270925v1_alt    440254 235 +    555799 ctgtcttctttttctggagacagggtctcactctgttgcccaagatacagagcagtcctgcaaccatgactcactgcagcctcgtcctcctgtgctcaagccatcctcctgcctcagcctcccctgtaggtgagactccaggcatgtgccaccatgcctggaaaatttgtaaagttttttctagagaggctttctcactg--tttcccaggctggtctcgaatatcttgcctcaagt
s panTro4.chr4             193152410 235 + 193495092 ctgtcttctttttctggagacagggtctcactttgttgcccatgatacagagcagtcctgcaaccatgactcactgcagcctcgtcctcctgtgctcaagccatcctcctgcctcagcctcccctgtaggtgggactccaggcatgtgccaccatgcctggaaaatctgtaaagttttttctagagaggctttctcactg--tttcccaggctggtctcgaatatcttgcctcaagt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198225477 237 + 198332218 CTGTCttctttttctggagacagggtctcactctgttgcccatgatacagagcagtcctgcaaccatgactcactgcagccttgtcctcctgtgctcaagccatcctcctgcctcagcctcccatgtagatgggactccaggcatgtgcctccatgcctggaaaatttgtaaagttttttctagagaggctttctcactgtctttcccaggctggtctcgaatatcttgcctcaagt
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113899425 237 + 115148730 ttgtcttctttttctggagccagggtctcactctgttgcccaggatacacagcagtcctgcaaccatggctcactgcagcctcaccctcctgtgctcaagccatcctcctgcctcagcctcccatgtaggtgggactccaggcatgtgccaccatgcctggaaaatttgtaaagtcttttctggagaggctctctcactgtgtttcccaggctggtctcaaatatctagcctcaaga
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183817326 237 + 184069350 CTGTCGTCtttttctggagacagggtctcgctctgttgcccaggatacagagcagtcctgcaatcacggctcgctgtggcctcctcctcctgtgctcaagccatcctcctgcctcagcttcccgtgtagctgggactccaggcaagtgccaccatgcctggaaaatttgtaaagttttgtctagagatggtttctcaccgtgtttcccaggctggtctcgaatatcttgcctcaagc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189209925 237 + 189454096 CTGTCGTCtttttctggagacagggtctcgctctgttgcccaggatacagagcagtcctgcaatcacggctcgctgtggcctcctcctcctgtgctcaagccatcctcctgcctcagcttcccgtgtagctgggactccaggcaagtgccaccatgcctggaaaatttgtaaagttttgtctagagatggtttctcaccgtgtttcccaggctggtctcgaatatcttgcctcaagc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178628981 237 + 178775436 CTGTCGtctttttctggagacagggtctcgctctgttgcccaggatacaGAGCAGTCCTGCAATCACGGCTCGCTGTGGCCTCctcctcctgtgctcaagccatcctcctgcctcagcttcccgtgtagctgggactccaggcaagtgccaccatgcctggaaaatTTGTAAAGTTTTGTCTAGAAATGGTTTCtcaccgtgtttcccaggctggtctcgaatatcttgcctcaagc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135562655 237 + 135778131 CTGTCGTCtttttctggagacagggtctcgctctgttgcccaggatacagagcagtcctgcaatcacggctcgctgtggcctcctcctcctgtgctcaagccatcctcctgcctcagcctcccgtgtagctgggactccaggcaagtgccaccatgcctggaaaatttgtgaagttttgtctagagatggtttctcaccgtgtttcccaggctggtctcgaatatcttgcctcaagc
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190670295 236 - 190850796 CTCTCttcttttt-tggagacagggtctcactctgttgaccagaatacagagcagtcatgcaatcatggctcacttcagcctcatcttcctgtgctcaagccatcctcctgcctcagcctcccttgtcggagagactttaggtatgtgccaccatgcctggcaaatatttaaagtttttcagagagatgctttctcactgtgtttccctggctggtctcgaataccttgcttcaagt
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87826339 237 - 129401213 I
e canFam3.chr16             18120164 298 -  59632846 I

a score=89498.000000
s hg38.chr4_KI270925v1_alt    440489 25 +    555799 gattcttccacctctgcctcccaaa
s panTro4.chr4             193152645 25 + 193495092 gattcttccacctcagcctcccaaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198225714 25 + 198332218 gattcttccacctcagcctcccaaa
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113899662 25 + 115148730 gattcttccacctcagcctcccaaa
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183817563 25 + 184069350 aattcttccacctcagcctcccaaa
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189210162 25 + 189454096 aattcttccacctcagcctcccaaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178629218 25 + 178775436 aattcttccacctcagcctcccaaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135562892 25 + 135778131 aattcttccacttcagcctcccaaa
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190670531 25 - 190850796 gattcttccacctcagcctcccaaa
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18120462 24 -  59632846 gattctctc-cctctgcccctcaag
i canFam3.chr16            I 298 C 0
e mm10.chr8                 87826339 237 - 129401213 I

a score=6012031.000000
s hg38.chr4_KI270925v1_alt    440514 1921 +    555799  
s panTro4.chr4             193152670 1923 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198225739 1923 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113899687 1913 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183817588 1866 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189210187 1865 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178629243 1846 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135562917 1846 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190670556 1913 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87826576 1865 - 129401213  
i mm10.chr8                I 237 C 0
s canFam3.chr16             18120486 1811 -  59632846  
i canFam3.chr16            C 0 I 1087

a score=805083.000000
s hg38.chr4_KI270925v1_alt    442435 252 +    555799 CAATGGGGTTGACTTAGTTTGAAAATCACTTTGTATTTGGCA-AATGCCCAGTCAGGGACCGCAGCCTAGACACACAGAATGCAGCCATGT----GAAGGCCATCCAAGTTCAAACAC----------------------AAACGAAAAAATTAG------TGTGTCCAGTTTCCAGTCGTAATAACTTTACCTTACAGACAAGCCGCTGATTCTCGGGAAGTCTGCTTCCCTCCAAATCCAGCTCATTTGGAAGGG-AGGAAAACAACATTTAATGAG-----CCCCTCT
s panTro4.chr4             193154593 252 + 193495092 CAATGGGGTTGACTTAGTTTGAAAATCACTTTGTATTTGGCA-AATGCCCAGTCAGGGACCGCAGCCTAGACACACAGAATGCAGCCATGT----GAAGGCCATCCAAGTTCAAACGC----------------------AAACGAAAAAATTAG------TGTGTCCAGTTTCCAGTCGTAATAACTTTACCTTACAGACAAGCCGCTGATTCTCGGGAAGGCTGCTTCCCTCCAAATCCAGCTCATTTGGAAGGG-AGGAAAACAACATTTAACGAG-----CCCCTCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198227662 253 + 198332218 CAATGGGGTTAACGTAGTTTGAAAATCACTTTGTATTTGGCA-AATGCCCAGCCAGGGACTGCAGCCTAGACACACAGAATGCAGCCATGT----GAAGGCCATCCAAGTTCAAACAC----------------------AAACCAAAAAATTAG------TGTGTCCAGTTTCCAGTCGTAATAACTTTACCTTACAGACAAGCCACTGATTCTCAAGAAGTCTGCTTCCCTCCAAATCCAGCTCATTTGGAAGGG-AGGAAAACAACATTTACCGAGC----CCCCTCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113901600 252 + 115148730 CAATGGGGTTGACTTTATTTGAAAATCACTTTGTATTTGGCA-AATGCCCAGACAGGGACAGCAGCCTAGACACACAGAATGCAGCCATGT----GAAGGCCATCCAAGTTCAAACAC----------------------AAACCAAAAAATTAG------TGTGTCCAGTTTCCAGTCGTAATAACTTTACCTTACAAACAAGCCGCTGATTCTCGGAACGTCTGCTTCCCTCCAAGTCCAGCTCATTTGGAAGGG-AGGAAAACAACGTTTACCGAG-----CCCCTCT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183819454 254 + 184069350 CCATGGGGTTGACTTAGTTTGAAAATCACTTTGTATTTGGCATCAGGCCTAGACAGTGACAGCAGCCTAGACACACAGAATGAAACCATGT----GAAGGCAGTCTAAGTTCAA--------------------------AAACCAAAAAATTAG------TGTGTCCCGTTTCCAGTCGTAATAACTTTACCTTAAAAACAAGCCGCTGACTCTCGGGAAGTCTGCTTCCCTCCAAATCCAGCTCATTTGGAAGGG-AAGGAAATAACATTTACTGAGCCCCTCCCCTCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189212052 258 + 189454096 CCATGGGGTTGACTTAGTTTGAAAATCACTTTGTATTTGGCATCAGGCCTAGACAGTGACAGCAGCCTAGACACACAGAATGAAACCATGT----GAAGGCAGTCTAAGTTAAAAAAC----------------------AAACCAAAAAATTAG------TGTGTCCCGTTTCCAGTCGTAATAACTTTACCTTAAAAACAAGCCGCTGACTCTCGGGAAGTCTGCTTCCCTCCAAATCCAGCTCATTTGGAAGGG-AAGGAAACAACATTTACTGAGCCCCTCCCCTCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178631089 258 + 178775436 CCATGGGGTTGACTTAGTTTGAAAATCACTTTGTATTTGGCATCAGGCCTAGACAGTGACAGCAGCCTAGACACACAGAATGAAACCATGT----GAAGGCAGTCTAagttcaaaaac----------------------aaaccaaaaaattag------tGTGTCCCGTTTCCAGTCGTAATAACTTTACCTTAAAAACAAGCCGCTGACTCTCGGGAAGTCTGCTTCCCTCCAAATCCAGCTCATTTGGAAGGG-AAGGAAACAACATTTACTGAGCCCCTCCCCTCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135564763 258 + 135778131 CCATGGGGTTGACTTAGTTTGAAAATCACTTTGTATTTGGCATCAGGCCTAGACAGTGACAGCAGCCTAGACACACAGAATGAAACCATGT----GAAGACAGTCTAAGTTCAAAAAC----------------------AAACCAAAAAATTAG------TGTGTCCAGTTTCCAGTCGTAATAACTTTACCTTAAAAACAAGCCGCTGACTCTCAGGAAGTCTGCTTCCCTCCAAATCCAGCTCATTTGGAAGGG-AAGGAAACAACATTTACTGAGCCCCTCCCCTCT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190672469 248 - 190850796 CAGTGGAGTTGGCCTCGTTTGAAAACCCCTTTGTATTCGGCCTCACGCATATACAATGACAGCAGCCTAGACACACAGAACTCGGCCATGG----GAAGGC-ATCTAAGTTAAAAAAC----------------------AA---AAACAATTCA------TGTCTCTAGTTTCCAGTCACAGTAGCTTCATCATAAACACAAGCTGCTGATTCTCGGGCAGTCTGCTTCCATCCAAATCCAGCTCATTTGGAAGAG--GGGAAACAACACTTACTGAG-----AAGCTCT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87828441 274 - 129401213 CAGTGTGGAAGTGTTAATTTACAAATCAATTTGTATTTGTGATCATTCCTATATAATGTCAACTGCCTGCACACAGAAAATGCAGCCCTGCAAAGAAAGGCCTCTTAACTTTCAAAACCACTTaaaaaaaaaaaagcaaaaaacaaaaaaaacaaaaaCATTATGGGCAATTTCCAGTAGTAATAACCACACTCCAAAGAGTGACTGATAGTCATAGG---------CTTCACCCAAACGCATTCCAGTTGTAACAT--GGGAGAC-ACATTTACTGAG-----CTACACT
i mm10.chr8                C 0 I 603
s canFam3.chr16             18123384 242 -  59632846 CAATGGGGATGAATTATTTTGAAAATCATTTTGTGTCTGTAATCATGGCTATAAATTGACTGTGTCCTGGACACTCCAAATGCGGCCCAAT----GAAGACCTTCTATATTCAA---T----------------------AAACTGAAAAATCAG------TATATTCCATTTCCAGCCATAATAACATCACTGTAAAGATGAGCCACTGAT---------GTCTGTTTTTATCCAAACCTAGCCCATTTGGAAGACAAGGGAAACAATATTTACTGAG-----CCCCTTT
i canFam3.chr16            I 1087 C 0

a score=224423.000000
s hg38.chr4_KI270925v1_alt    442687  88 +    555799 -CTGTCCTACGCGTCAGCCCATGCAGCCTCACAACTGCACCTTGGGGTACCCAGGATTACGGACATTTTACAGGTGAGATCAC----------------------------------GCTCAG
s panTro4.chr4             193154845  86 + 193495092 ---GCCCCACACGTCAGCCCATGCAGCCTCACAACTGCACCTTGGGGTACCCAGGATTACAGACATTTTACAGGTGAGATCAC----------------------------------GCTCAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198227915  88 + 198332218 -CTGCCCCACGCGTCAGCCCGTGAAGCCTCACAACTGCACCGTGGGGTGCCCAGGATTACCGATATTTTACAGGTGAGATCAC----------------------------------GCTCAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113901852  88 + 115148730 -CTACCCCACGCATCAGCCCATGTAGCCTCAAAACTGCACCATGGGGTGCCCGGAATTACCGACATTTTACAGCTGAGATCAT----------------------------------GCTCAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183819708  87 + 184069350 -CTG-CCCATGCACCAGCCCGTGCAGCCTCCCAACTACACCGTGGGGTGCCCAGGATTACCTATATGTTACAGGTGAGCTCAC----------------------------------GCTCAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189212310  87 + 189454096 -CTG-CCCATGCACCAGCCCGTGCAGCCTCCCAACTACACCGTGGGGTGCCCAGGATTACCTATATGTTACAGGTGAGCTCAC----------------------------------GCTCAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178631347  87 + 178775436 -CTG-CCCATGCACCAGCCCGTGCAGCCTCCCAACAACACCGTGGGGTGCCCAGGATTACCTATACGTTACAGGTGAGCTCAC----------------------------------ACTCAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135565021  87 + 135778131 -CTG-CCCACACACCAACCCATGAAGCCTCCCAACTACACCGTGGTGTGCCCAGGATTACCTACATGTTACAGGTGAGCTCAC----------------------------------GCTCAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190672717  87 - 190850796 -CTGCCCCGTGAGT-GGCCCATGCAGCCTCACAACTACACCATGGGGTGCACAGGATTACCTACAGTTTACAGGTGAGAACGC----------------------------------TCTCAG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18123626 122 -  59632846 TCTG-CCcaagtattatctcatgtaaccccatagcaatactgtgaggtacccattgctatatacatttcagagctgagagaacagactcaaagCCCACATACAAggcagcctgggtggctcag
i canFam3.chr16            C 0 I 177
e mm10.chr8                 87828715 603 - 129401213 I

a score=248779.000000
s hg38.chr4_KI270925v1_alt    442775 89 +    555799 AACGCACGTGCAGAAGAGGCAACTGGCAGTCA-CACATGGCCCACCATGTCTTAGACTT-GGAGACATAATCTCACCTGCACATCAGACTC
s panTro4.chr4             193154931 89 + 193495092 AACGCACGTGCAGAAGAGGCAACTGGCAGTCA-CACATGGCCCACCATGTCTCAGACTT-GGAGACATAATCTCACCTGCACATCAGACTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198228003 89 + 198332218 AACGCCCATGCAGAAGAGGTAACTGGCAGTCA-CACATGGCCCACCGTGTCTCAGGCGT-GGAGACATAATCTCACCTGCACATCAGACTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113901940 89 + 115148730 AAGACACACGCAGAAGAGGCAACTGGCAGTCA-CACATGGCCCACCATGTCTCAGGCTT-GGAGACATAATCTTACCTGCACATCAGACTC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183819795 83 + 184069350 TACGCACATGCAGAAGAGGCTACTAGCAGTCA-CACACGGCCCACCTTGTCTCAGACTT-GGAGACATAATCTCACCTGCACATC------
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189212397 83 + 189454096 TACGCACATGCAGAAGAGGCTACTAGCAGTCA-CACACGGCCCACCTTGTCTCAGACTT-GGAGACATAATCTCACCTGCACATC------
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178631434 83 + 178775436 TACGCACATGCAGAAGAGGCTACTAGCAGTCA-CACACGGCCCACCTTGTCTCAGGCTT-GGAGACATAATCTCACCTGCACATC------
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135565108 83 + 135778131 AACGCACATGCAGAAGAGGCTACTAGCAGTCA-CACACGGCCCACCTTGTCCCAGGCTT-GGAGACATAATCTCACCTGCACATC------
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190672804 87 - 190850796 AGCGCACATGCAGACGCAGCAACTAGCAGTTA-CACACAGCCCACCCTGTCCCGGGCTT-GGAGAC--AATCTCACCTGAGCATCAGGTGC
i calJac3.chr3             C 0 I 189
s canFam3.chr16             18123925 90 -  59632846 AGCACACATACAGAAAGGACTGCTAGCATTTACCACTCCACCCTCCCAG-CTCAGGCTTCAAAGACATGATCTCACCCCTACCTTAGACTC
i canFam3.chr16            I 177 C 0
e mm10.chr8                 87828715 603 - 129401213 I

a score=732125.000000
s hg38.chr4_KI270925v1_alt    442864 226 +    555799 --TCTCGACAAGACCCTTCTAAGCTAGGTGGAAAGAGGTAAGTCAAGGAGAGAACACCCAGAGTCTTAGCCCTGATGCTG-CACTGACATATCCACGGTCGGGGACACATCCTAATGCTTCCATGCCTCAGCAGCTACATCTGTACAA-GGGGACAC---TCAGTCTCAAACTTGCCTCACTTCATCGTCAGTCAAATGACTCTTTTTTACCCTTGGGTTCTTGGTACTGAGA
s panTro4.chr4             193155020 222 + 193495092 --TCTCGACAAGACCCTTCTAAGCTAGGTGGAAAAAGGTAAGTCAAGGAGAGAACACCCAGAGTCTTAGCCCTGATGCTG-CACTGACATATCCACGGTCGGGGACACATCCTAACGCTTCCATGCCTCAGCAGCTACATCTGTACAA-GGGGACA-------GTCTCAAACTTGCCTCACTACATCGTCAGTCAAATGACTCTTTTTTACCCTTGGGTTCTTGGTACTGAGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198228092 226 + 198332218 --TCTCGACAAGACCCTTCTAAGCTAGGTGGAAAAAGGTAAGTCAAGGAGAGAACACCTAGAGTCTTAGCCCTGATGCTG-CACTGACATATCCATGGTCGGGGACACATCCTAACGCTTCCATACCTCAGCAGCTACATCTGTACAA-GGGGACAC---TCAGTCTCACACTTGCCTCACTTCATCATCAGTCAAATCACTCGTTTTTACCCATGGGTTCTTGGTACTGAGA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113902029 226 + 115148730 --CCTCGACAAGACCCTTCTAAGCTAGGTGGAAAAAGGTAAGTCAAGGAGAGAACACCCAGAGTCTTAGCCCTGATGCTG-CACCGACATATCCATGGTCGGGGACACATCCTAATGCTTTCATGCCTCAGCAGCTACATCTGTACAA-GGGGACAC---TCAGTCTCACACTCGCCTCACTTCATCGTCAGTCAAATGACTCATTCTTACCAGTGGGTTCTTGGTACTGAGA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183819878 225 + 184069350 ---CCCGACAAGACCCTTCTGAGCTAGGTGGAAAAAGGTAAGTCAAGGAGAGAACACCCAGAGCCTTAGCCCTGAGGCTG-CACTGACATATCCACCATCTGGGACAAATCCTAACGTTTCCATGCCTCAGCAGCTACATCTGTACAA-GGGGACAC---CCAGTCTCACACTCGCCTCACTTCATGGTCATTGAGACGACTTGTTTTTACCAGTGGGTTCTTGGTACTGAGA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189212480 225 + 189454096 ---CCCGACAAGACCCTTCTGAGCTAGGTGGAAAAAGGTAAGTCAAGGAGAGAACACCCAGAGCCTTAGCCCTGAGGCTG-CACTGACATATCCACCATCTGGGACAAATCCTAACGTTTCCATGCCTCAGCAGCTACATCTGTACAA-GGGGACAC---CCAGTCTCACACTCGCCTCACTTCATGGTCATTGAGACGACTTGTTTTTACCAGTGGGTTCTTGGTACTGAGA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178631517 225 + 178775436 ---CCCGACAAGACCCTTCTGAGCTAGGTGGAAAAAGGTAAGTCAAGGAGAGAACACCCAGAGCCTTAGCCCTGAGGCTG-CACTGACATATCCACCATCTGGGACAAACCCTAACGTTTCCATGCCTCAGCAGCTACATCTGTACAA-GGGGACAC---CCAGTCTCACACTCGCCTCACTTCATGGTCATTGAGACGACTTGTTTTTACCAGTGGGTTCTTGGTACTGAGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135565191 225 + 135778131 ---CCCGACAAGACCCTTCTGAGCTAGGTGGAAAAAGGTAAGTCAAGGAGAGAACACCCAGAGCCTTAGCCCTGAGGCTG-CACTGACATATCCACCATCTGGGACAAATCCTAACGTTTCCATGCCTCAGCAGCTACATCTGTACAA-GGGGACAC---CCAGTCTCACACTCGCCTCACTTCATGGTCATTCAGACGACTTGTTTTTACCAGTGGGTTCTTGGTACTGAGA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190673080 229 - 190850796 --TCTCAACAAGACTCTTCTAAGCTAGGTGGAAAAAGGTAGGTCAAGGCAAGAACACCCAGGGCCTTATCCCTGATGCTG-CACTGACATATCCACCATCTGGGACAAATCATAATGTTTCCATGCCTCAGCAGCTACGTCTGTACAACATGAACAC-TATTAGTTTCACACTCGCCTCATTTCGTCATCTTTCAAATGACTCGTTTTTACCAGTAGGTTCCTGGTACTGAGA
i calJac3.chr3             I 189 C 0
s canFam3.chr16             18124015 232 -  59632846 TCTCTCAACGAGACTTTTCTACActtaatagagaaaggaaagtcaaggagaaaatatctagagcttcacccttgatgctgccactgacatacgcataacctgggatacatcataacctttttaaacctcactatctacatctgtacaa-ggggaatagtattagtcccatatctttctcacttcatagTCATTTAAATGAAATGTTTTTACTAGCAAATTTTTTGTACTGAGA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87828715 603 - 129401213 I

a score=388685.000000
s hg38.chr4_KI270925v1_alt    443090 141 +    555799 AGTATTTAAATTAGTCTTTTTTTAAAGTGGTTGCGTGAgccaggtgcagtggctcacacctgtaatcccagcactttgggaggctgaggcaggtgaatcacctgacgtcaggagttcaagaccaggctggccaacatggtg
s panTro4.chr4             193155242 141 + 193495092 AGTATTTAAATTAGTCTTGTTTTAAAGTGGTTGCGTGAgccaggtgcagtggctcacacctgtaatcccagcactttgggaggctgaggcagttgaatcacctgaggtcaggagttcaagaccaggctgggcaacatggtg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198228318 141 + 198332218 AGTATTTAAATTAGTCTTTTTTTAAAGAGGTTGCGTGagccaggtgcagtggctcacacctgtaatcccagcacttcagaaggctgaggcaggtgaatcacctgaggtcaggagttcaagaccaggctggccaacatggca
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113902255 141 + 115148730 AGTATTTAAATTAGTCTTTTTTAAAAGTGGTTGCGTGAgccaggtacagtggctcacacctgtaatcccagcactttgggaggcagaggcaggtgaatcacctgaggtcaggagttcaagaccaggctggccaacatggtg
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183820103 139 + 184069350 AGTATTTAAATTAGTCTTTTCT-AAAGTGGTTGTGTGggccaggtacagtggctcacacctgtaaccccagcactttgggaggctgaagtggg-gaatcacctgaggtcaggagttcgagaccagcctagccaacagggtg
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189212705 139 + 189454096 AGTATTTAAATTAGTCTTTTCT-AAAGTGGTTGTGTGggccaggtacagtggctcacacctgtaaccccagcactttgggaggctgaagtggg-gaatcacctgaggtcaggagtttgagaccagcctagccaacagggtg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178631742 139 + 178775436 AGTATTTAAATTAGTCTTTTCT-AAAGTGGTTGcgtgggccaggtacagtggctcacacctgtaaccccagcactttgggaggctgaagcggg-gaatcacctgaggtcaggagttcgagaccagcctagccaacagggtg
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135565416 138 + 135778131 AGTATTTAAATTAGTCTTTTCT-AAAGTGGTTGCGTGggccaggtacagtggcccacacctgtaaccccagcactttgggaggctgaagcagg-gaatcacctgaggtcaggagttcgag-ccagcctggccaaccaggtg
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190673309 139 - 190850796 AATATTTAAATTAGTCTTTTCT-AAAGCAGTTGTGTGAgccaggcacagtggctcacagc-acaatcacagcactttgggagactgaggtgcgtgaatcacctgaggtcaggagttcaagaccagcctggccaacatggtg
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87828715 603 - 129401213 I
e canFam3.chr16             18124247   0 -  59632846 C

a score=851808.000000
s hg38.chr4_KI270925v1_alt    443231 349 +    555799 aaaccccatctctactaaaaatac--aagttagccaggtgtggtggcaggcccctctaatcccagctacttgggaggctgaggcaggagaatcactaaaacccgggaggcggaggctgcagtgagctgagattgagtcactgcactccagcctgggtgactgagagagactccgtc-tccaaaaaTAATTAT-------AATAAAGCAGTTGTgtagaccagagtgaagagctctgactctagaagtccacaaggctgggtgcaaatccaggcactgccactcaccagctccacaac-ctGTGAAACTCCAAGCCCAAGTTCCCT-GCCATCACCCACAAGAGTAACCGGC-------------------------------------------------CTCCTGCAGT
s panTro4.chr4             193155383 348 + 193495092 aaaccccatctctactaaaaatac--aagttagccaggtgtggtggcaggcccctgtaatcccagctacttgggaggctgaagcaggagaatcactaaaacccgggaggcggaggctgcagtgagctgagatcgcgtcactgcactccagcctgggtgactgagagagactccgtc-tccaaaaaTAATTAT-------AAcaaagcagttgtgtagaccagagtgaagagctctgactctagaagtccacaaggctgggtgcaaatccaggcactgccactcaccagctccacaac-ctGTGAAACTCCAAGCCCAAGTTCCC--GCCATCACCCACAGGAGTAACCGGC-------------------------------------------------GTCCTGCAGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198228459 391 + 198332218 aaaccccatctctactaaaaatac--aagttagccaggtgtggtggcaggcccctgtaattccagctactcgagaggctgaggcaggagaatcacttaaacccgggaggcagaggctgcagcgagctgagatcacgtcactgcactccagcctgggtgactgagagagattccatc-tccaaaaaTAATTAT-------AATaaagcggttgcatagaccagagtgaagagctctgactctagaagtccacaaagctgggtgcaaatccaggcactgccactcaccagctccacaac-ctGTGAAACTCCAAGCCCAAGTTCCCT-GCCATCACCTGCAAGAGTAACTGGCCTCCTGCAGTGTTGTTCTGTGAATCCCAGTAGAGTAAC-------TGGTCTCCTGCAGT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113902396 391 + 115148730 aaaccccatctctattgaaaatac--aggttagccaggtgtggtggcaggcccctgtaatcccagctactcgggaggctgaggcaggagaatcacttaaacccgggaggcggaggctgcagtgagctgagatcacatcactgcactccagcctgggtgactgagagagactccgtc-tccaaaaaTGATTAT-------AATAAAGCAGTTGTgtagaccagagtgaagagctctgactctagaagtccacaaggctgggtgcaaatccaggcactgccactcgccagctctgtaac-ctGTGAAACTCCAAGCCCAAGTTCCCT-GCCATCACCCGCAAGAGTAACCGACCTCCTGCAGTGTTGTTCTGCGAATCCCAGTA-------GAGTAACCGGCCTCCTGCAGT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183820242 355 + 184069350 aatccacatctctactaaaaatgcaaaaattagccaggtgtgggggctcagacctgtaatcccagctactcagggggctgaggcgggagaatgacttaaaccc-agaggcggaggctgcagtgagctgcgctggcgcctctgcactccagcctgggtgacagagagagactccatc-tccaaaaaTAATAATAGT-AACAATAAAGCAGTTGTGTAGAACAGAGTGAAGAGCTCTGACTCTAGAAGTCCACAAGGCTGGGTA-AGATCCAGGCACTGCCACTTGCCAGGTCCACCAC-CTGTGACACTCCAAGCCCAAGTTCCCT-GCCGTCACCCACAAGAGCAACAGGC-------------------------------------------------CTCCTCCCGT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189212844 355 + 189454096 aaaccccatctctactaaaaatgcaaaaattagccaggtgtggtggctcagacctgtaatcccagctactcagggggctgaggcgggagaatgacttaaaccc-agaggcggaggctgcagtgagctgagatggcgcctctgcactccagcctgggtgacagagagagactccatc-tccaaaaaTAATAATAGT-AACAATAAAGCAGTTGTGTAGAACAGAGTGAAGAGCTCTGACTCTAGAAGTCCACAAGGCTGGGTA-AGATCCAGGCACTGCCACTTGCCAGGTCCACCAC-CTGTGACACTCCAAGCCCAAGTTCCCT-GCCGTCACCCACAAGAGCAACAGGC-------------------------------------------------CTCCTCCCGT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178631881 355 + 178775436 aaaccccatctctactaaaaatgcaaaaattagccaggtgtggtggctcagacctgtaatcccagctactcagggggctgaggtgggagaatgacttaaaccc-ggaggcggaggctgcagtgagctgagatggcgcctctgcactccagcctgggtgacagagagagactccatc-tccaaaaataataatagt-aacaataaagtGGTTGTGTAGAACAGAGTGAAGAGCTCTGACTCTAGAAGTCCACAAGGCTGGGTG-AGATCCAGGCACTGCCACTTGCCAGGTCCACCAC-CTGTGACACTCCAAGCCCAAGTTCCCT-GCCGTCACCCACAAGAGCAACAGGC-------------------------------------------------CTCCTCCCGT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135565554 355 + 135778131 aaaccccatctctactaaaaatgcaaaaattagccaggtgtggtggctcagacctgtaatcccagctactcagggggctgaggcaggataatgacttaaaccc-ggaggcggaggctgcagtgagctgagatggcgcctctgcactccagcctgggtgaccgagagagactccatc-tccaaaaaTAATAATAGT-AACAATaaagcggttgtgtagaacagagtgaagagctctgactctagaagtccacaaggctgggtg-agatccaggcactgccacttgccagctCCACCAC-CTGTGACACTCCAAGCCCAAGTTCCCT-GCCGTCACCCGCAAGAGCAACAGGC-------------------------------------------------CTCCTCCCGT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190673448 344 - 190850796 aaaccccaattctagtaaaactacaaaagttagccaggagtggtggctgacccctggagtcccagctactcgggaggctgaggcaggaaaattgcttgaacccggtaggtggaggctgcaatgagccaagattatgccactgcactccaacctgggtgacagagcaaaactctgtcgtcaaaaaaaaacaacattaaaaaaaaaGGTGATTGTGTAGACCAGGGTG------------TCTAGGGGTCTACATGGCTGGGTGCAAATTTAGGCACTGCCACTCGCCAGCTCCACAAC-CTATGAAACTTCAAGACCCAGTTCCCT-GAAATCAACCGGAAGA--CACAGGC-------------------------------------------------CTCC-CCAGT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18124247 180 -  59632846 AGAACTTATTTCAATTAGTATTCT--------------------------------------------TTAAGggggctg-----------------------------------------------------------------------------------------------c-t-----------------------------------------tagggcaaagagctctgactctggaagtagacagaactgggtgcgaaccccagctccacacctcgcccaccaaataacactgctcagcagcaagcccaagaatactggctgctaaagagatcagtaacaacc-------------------------------------------------ctctgccagt
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87828715 603 - 129401213 I

a score=6839130.000000
s hg38.chr4_KI270925v1_alt    443580 1910 +    555799  
s panTro4.chr4             193155731 1904 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198228850 1908 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113902787 1906 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183820597 1937 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189213199 1937 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178632236 1936 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135565909 1931 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190673792 1916 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87829318 1922 - 129401213  
i mm10.chr8                I 603 I 372
s canFam3.chr16             18124427 1957 -  59632846  
i canFam3.chr16            C 0 C 0

a score=8681.000000
s hg38.chr4_KI270925v1_alt    445490 3 +    555799 CAG
s panTro4.chr4             193157635 3 + 193495092 CAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198230758 3 + 198332218 CAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113904693 3 + 115148730 CAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183822534 3 + 184069350 CAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189215136 3 + 189454096 CAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178634172 3 + 178775436 CGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135567840 3 + 135778131 CAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190675708 1 - 190850796 --G
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18126384 3 -  59632846 CAA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87831240 372 - 129401213 I

a score=826304.000000
s hg38.chr4_KI270925v1_alt    445493 214 +    555799 CCCTTTGGATGGGCTCCCAGGGAAGGTCTCTCAAGCCTCACATTTCACAGCATAGCAAACTTGCTAAATTGGAA-TACATTTACA-TC-TGTATCTTCTCTTGGTAAGATGGAAAGCCTGGGAAATGGTCTTTGGACTAGCCTCCAGTAGG--AAGAAAGCTAGCTTTTCTC----CTTCACTTATTTTTAAGCCTATTAAACCTCA-ATGTGTTGTAGAAATA
s panTro4.chr4             193157638 214 + 193495092 CCCTTTGGATGGGCTCCCAGGGAAGGTCTCTCAAGCCTCACATTTCACAGCATAGCAAACTTGCTAAATTGGAA-TACATTTACA-TC-TGTATCTTCTCTTGGTAAGATGGAAAGCCTGGGAAATGGTCTTTTGACTAGCCTCCAGTAGG--AAGAAAGCTAGCTTTTCTC----CTTCACTTATTTTTAAACCTATTAAACTTCA-ATGTATTGTAGAAATA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198230761 214 + 198332218 CCCTTTGGATGCGCTCCCAGGGAAGGTCTCTCAAGCCTCACATTTCACAGCATAGCAAACTTGCTAAATTGGAA-TACATTTACA-TC-TGTATCTTCTCTTGGTAAGATGGAAAGCCTGGAAAATGGTCTTTTGACTAGCCTCCAGTAGG--AAGAAAGCTAGCTTTTCTC----CTTCACTTACTTTTAAACCTATTAAACTTCA-ATGTGTTGTAGAAATA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113904696 214 + 115148730 CCCTTTGGATGGGCTCCCAGGGAAGGTCTCTCAAGCCTCACATTTCACAGCATAGCAAACTTGCTAAATTGGAA-TACATTTACA-TC-TGTATCTTCTCTTGGTAAGATGGAAAGCCTGGGAAATGGTCTTTTGACTAGCCTCCAGTAGG--AAGAAAGCTAGCTTTTCTC----CTTCACTTATTTTTAAACCTATTAAACTTCA-ATGTGTAGTAGAAATA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183822537 214 + 184069350 CCCTTTGGATGGGCTCCCAGGGAAGGCCTCTCAAGCATCACATTTCACAGCATAGCAAACTTGCTAAATTGGAA-TACATCTACA-GC-TGTATCTTCTCTTGGTAAGATGGAAAGGCTGGGAAATGGACTTTTGACTAGCCTCCAGTAAG--AGGAAAGCTAGCTTTTTTC----CTTCACTTATTTTTAAACCTATTAAACTTGA-ATGTGTAGTAGAAATA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189215139 214 + 189454096 CCCTTTGGATGGGCTCCCAGGGAAGGCCTCTCAAGCATCACATTTCACAGCATAGCAAACTTGCTAAATTGGAA-TACATCTACA-GC-TGTATCTTCTCTTGGTAAGATGGAAAGGCTGGGAAATGGACTTTTGACTAGCCTCCAGTAAG--AGGAAAGCTAGCTTTTTTC----CTTCACTTATTTTTAAACCTATTAAACTTGA-ATGTGTAGTAGAAATA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178634175 214 + 178775436 CCCTTTGGATGGGCTCCCAGGGAAGGCCTCTCAAGCATCACATTTCACAGCATAGCAAACTTGCTAAATTGGAA-TACATCTACA-GC-TGTATCTTCTCTTGGTAAGATGGAAAGGCTGGGAAATGGACTTTCGACTAGCCTCCAGTAAG--AGGAAAGCTagcttttttc----cttcacttatttttaaaccTATTAAACTTGA-ATGTGTAGTAGAAATA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135567843 214 + 135778131 CCCTTTGGATGGGCTCCCAGGGAAGGCCTCTCAAGCATCACATTTCACAGCATAGCAAACTTGCTAAATTGGAA-TACATCTACA-GC-TGTATCTTCTCTTGGTAAGATGGAAAGGCGGGGAAATGGACTTTTGACTAGCCTCCAGTAAA--AGGAAAGCTAGCTTTTTTC----CTTCACTTATTTTTAAACCTATTAAACTTGA-ATGTGTAGTAGAAATA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190675709 213 - 190850796 CCCTTTGGATGGGCTCCCAGGGAAGATCTTTCAAGCATCACATTTCACAGCATAGCAAACTTGCTAAATCGGAA-TACATTTACA-TC-TGTATCTTCACTTGGTAAAAAAGAAAGGCTGAGAAATTGACTTTTGATTAGCCTCCAGTAGG--TAGAAGGATAGCTTTTTT-----CTTCGCTTATTTTTAAACCTACTAAACTTCA-ATATGTAGTCGAAATA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87831612 223 - 129401213 CCCCTTAGGGGGACTCCCAGAGAAGATCATTAAAATATAAAATTTCACAGTAGTGCCAATCTGTAAAATAAGAATTATATTTACATTC-TGAATCATTTCTTCATAGTATGAGAAGCCTGAAAAGTGGACTTGTGGAGAGCACTCAGCAGGGAAAGGAAGCTACCTTTTCCCCTGTCTTTTCTCATGTTCAACTCCATCAAGCTTCAGACTTGCAGCAGAAATA
i mm10.chr8                I 372 I 578
s canFam3.chr16             18126387 216 -  59632846 CTCTTTGGATGAGATCCCAAGGAAGATCTTTCAAACATCAAATTATACTGCACAGCAAATTTGCAGAGTTGAAA-TACATTTATG-TCTTGTATCATCTCTTGGTAAAACAGAAAGGCAGGGAATTTGACTTTTGACTATCTTTCAGTAAG-AAAGCAAGCTATTCTTTCTC----CTTCACTTATTTTTAAACCCACTAAGCTTTT-ACTGGTAGTAGAAACA
i canFam3.chr16            C 0 C 0

a score=28377.000000
s hg38.chr4_KI270925v1_alt    445707 7 +    555799 TGGAAAt
s panTro4.chr4             193157852 7 + 193495092 TGGAAAt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198230975 7 + 198332218 TGGAAAt
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113904910 7 + 115148730 TGGAAAT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183822751 7 + 184069350 TGGAAAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189215353 7 + 189454096 TGGAAAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178634389 7 + 178775436 TGGAAAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135568057 7 + 135778131 TGGAAAT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190675922 7 - 190850796 CGGAAAT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18126603 7 -  59632846 TGGAAAT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87831835 578 - 129401213 I

a score=3045.000000
s hg38.chr4_KI270925v1_alt    445714 6 +    555799 agtcca
s panTro4.chr4             193157859 6 + 193495092 agtcca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198230982 6 + 198332218 agtcca
i ponAbe2.chr4             C 0 C 0
s canFam3.chr16             18126610 6 -  59632846 AGTCTA
i canFam3.chr16            C 0 I 702
e mm10.chr8                 87831835 578 - 129401213 I
e calJac3.chr3             190675929 0 - 190850796 C
e chlSab2.chr7             135568064 0 + 135778131 C
e papAnu2.chr5             178634396 0 + 178775436 C
e macFas5.chr5             189215360 0 + 189454096 C
e rheMac3.chr5             183822758 0 + 184069350 C
e nomLeu3.chr7b            113904917 0 + 115148730 C

a score=40647.000000
s hg38.chr4_KI270925v1_alt    445720 163 +    555799 tcttgaattaatttttgtataaggtgtaaggaagggatccagtttcagctttctacatatggctagccagttttcccagcaccatttattaaatagggaatcctttacccattgcttgtttttgtcaggtttatcaaagatcagatggttgtagatatgcggc
s panTro4.chr4             193157865 163 + 193495092 tcttgaattaatttttgtataaggtgtaaggaagccatccagtttcagctttctacatatggctagccagttttcccagcaccatttattaaatagggaatcctttacccattgcttgtttttgtcaggtttgtcaaacatcagatggttgtagatatgcggc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198230988 161 + 198332218 tcttgaattaatttttgtataaggtgtacggaaaggatacagtttcagctttctacatatggctagccagttttcccagca-catttatt-aatagggaatcctttacccattgcttgtttttctcaggtttgtcaaagatcagatggttgtagatatgtggc
i ponAbe2.chr4             C 0 I 2454
e mm10.chr8                 87831835 578 - 129401213 I
e canFam3.chr16             18126616 702 -  59632846 I
e calJac3.chr3             190675929   0 - 190850796 C
e chlSab2.chr7             135568064   0 + 135778131 C
e papAnu2.chr5             178634396   0 + 178775436 C
e macFas5.chr5             189215360   0 + 189454096 C
e rheMac3.chr5             183822758   0 + 184069350 C
e nomLeu3.chr7b            113904917   0 + 115148730 C

a score=198169.000000
s hg38.chr4_KI270925v1_alt    445883 2233 +    555799  
s panTro4.chr4             193158028 2210 + 193495092  
i panTro4.chr4             C 0 C 0
e mm10.chr8                 87831835  578 - 129401213 I
e canFam3.chr16             18126616  702 -  59632846 I
e calJac3.chr3             190675929    0 - 190850796 C
e chlSab2.chr7             135568064    0 + 135778131 C
e papAnu2.chr5             178634396    0 + 178775436 C
e macFas5.chr5             189215360    0 + 189454096 C
e rheMac3.chr5             183822758    0 + 184069350 C
e nomLeu3.chr7b            113904917    0 + 115148730 C
e ponAbe2.chr4             198231149 2454 + 198332218 I

a score=10559.000000
s hg38.chr4_KI270925v1_alt    448116 50 +    555799 TTTACTTAAAGAAATAAAAGGTGTCAGAGAAAAAAAAGAAATATGATAAC
s panTro4.chr4             193160238 50 + 193495092 TTTACTTAAAGAAATAAAAGGTGTCAGAGAAAAAAAAGAAATATGATAAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198233603 47 + 198332218 TTTACTTAAAG-AATAAAAGGTGTCAGAG-AAAAAAAGAAATATG-TAAT
i ponAbe2.chr4             I 2454 C 0
e mm10.chr8                 87831835 578 - 129401213 I
e canFam3.chr16             18126616 702 -  59632846 I
e calJac3.chr3             190675929  0 - 190850796 C
e chlSab2.chr7             135568064  0 + 135778131 C
e papAnu2.chr5             178634396  0 + 178775436 C
e macFas5.chr5             189215360  0 + 189454096 C
e rheMac3.chr5             183822758  0 + 184069350 C
e nomLeu3.chr7b            113904917  0 + 115148730 C

a score=348740.000000
s hg38.chr4_KI270925v1_alt    448166 122 +    555799 AGTCTGGAAAATAAATTATAAGAAGCAGAACTGATGAATCATTTCAACATACTTACCTGAAGAGTATGAATTTTGTCACATTTAAAAATAGATTGGATGGGCCAGGCACAGTGGCTCACATC
s panTro4.chr4             193160288 122 + 193495092 AGTCTGGAAAATAAATTATAAGAAGCAGAACTGATGAATCATTTCAACATACCTACCTGAAGAGTATGAATTTTGTCACATTTAAAAATAGATTGGATGGGCCAGGCACAGTGGCTCACATC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198233650 117 + 198332218 AGTCTGG-AAATAA--TATAAGAAGCAGAACTGATGAATCATTTCAACATACTTACCTGAAGAGTATGAA-TTTGTCACTCTTAAAAATAGA-TGGATGGGCCAGGCACAGTGGCTCACATC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113904917 122 + 115148730 AGTCTGGAAAATAAATTACAAGAAACAGAACTGATGAATCATTTCAACATACTTACCTGAAGAGTATGAATTTTCTCACTCTTAAAAATAGATTGGATGggccaggcacagtagctcacatc
i nomLeu3.chr7b            C 0 I 731
s rheMac3.chr5             183822758 122 + 184069350 AGTCTGGAAAATAAATTCTAAGAAGCAGAACTAATGAATCATTTTAACATACTTACCTGAAGAGTATGAACGTTCTCACTCTTAAAAATAGATTGGATGggccaggcacagtggctcacatc
i rheMac3.chr5             C 0 I 785
s macFas5.chr5             189215360 122 + 189454096 AGTCTGGAAAATAAATTCTAAGAAGCAGAACTAATGAATCATTTTAACATACTTACCTGAAGAGTATGAACGTTCTCACTCTTAAAAATAGATTGGATGggccaggcacagtggctcacatc
i macFas5.chr5             C 0 I 757
s papAnu2.chr5             178634396 122 + 178775436 AGTCTGGAAAATAAATTCTAAGAAGCAGAACTAATGAATCATTTTAACATACTTACCTGAAGAGTATGAACGTTCTCACTCTTAAAAATAGATttgatgggccaggcacagtggctcacatc
i papAnu2.chr5             C 0 I 759
s chlSab2.chr7             135568064 122 + 135778131 AGTCTGGAAAATAAATTCTAAGAAGCAGAACTGATGAATCATTTTAACATACGTACCTGAAGAGTATGAACGTTCTCACTCTTAAAAATAGATTGGATGggccaggcacagtggctcacatc
i chlSab2.chr7             C 0 I 799
s calJac3.chr3             190675929 122 - 190850796 AGTCTGGGAAATAAATTTCAAGAAGCAGAAATGATGAATCATTTTAACATGCTTACCTGAAGAGTATGAATTTTTTTTACCTTAAAACTAGATTGGATGAgccaggcatggtggctcacacc
i calJac3.chr3             C 0 I 899
e mm10.chr8                 87831835 578 - 129401213 I
e canFam3.chr16             18126616 702 -  59632846 I

a score=11325.000000
s hg38.chr4_KI270925v1_alt    448288 8 +    555799 CCCAAATA
s panTro4.chr4             193160410 8 + 193495092 CCCAAATA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198233767 8 + 198332218 CCCAAATA
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189216239 8 + 189454096 CCCAAATA
i macFas5.chr5             I 757 C 0
s papAnu2.chr5             178635277 8 + 178775436 CCCAAATA
i papAnu2.chr5             I 759 C 0
s calJac3.chr3                174032 8 + 190850796 CCCAAATA
i calJac3.chr3             n 899 C 0
e mm10.chr8                 87831835 578 - 129401213 I
e canFam3.chr16             18126616 702 -  59632846 I
e chlSab2.chr7             135568186 799 + 135778131 I
e rheMac3.chr5             183822880 785 + 184069350 I
e nomLeu3.chr7b            113905039 731 + 115148730 I

a score=5922.000000
s hg38.chr4_KI270925v1_alt    448296 3 +    555799 TCA
s panTro4.chr4             193160418 3 + 193495092 TCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198233775 3 + 198332218 TCA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b              1242969 3 - 115148730 TCA
i nomLeu3.chr7b            n 731 C 0
s macFas5.chr5             189216247 3 + 189454096 TCA
i macFas5.chr5             C 0 I 17
s papAnu2.chr5             178635285 3 + 178775436 TCA
i papAnu2.chr5             C 0 I 17
s calJac3.chr3                174040 3 + 190850796 TCA
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87831835 578 - 129401213 I
e canFam3.chr16             18126616 702 -  59632846 I
e chlSab2.chr7             135568186 799 + 135778131 I
e rheMac3.chr5             183822880 785 + 184069350 I

a score=65188.000000
s hg38.chr4_KI270925v1_alt    448299 21 +    555799 TGGGGAGTTAATTTGCTCTCA
s panTro4.chr4             193160421 21 + 193495092 CGGGGAGTTAATTTGCTCTCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198233778 21 + 198332218 TGGGGAGTTAATTTGCTCTCA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b              1242972 21 - 115148730 TGGGGAGTTAATTTGCTCTCA
i nomLeu3.chr7b            C 0 n 0
s rheMac3.chr5             183823665 21 + 184069350 TGGGGAGTTAATTTCCTCTCA
i rheMac3.chr5             I 785 C 0
s macFas5.chr5             189216267 21 + 189454096 TGGGGAGTTAATTTCCTCTCA
i macFas5.chr5             I 17 C 0
s papAnu2.chr5             178635305 21 + 178775436 TGGGGAGTTAATTTCCTCTCA
i papAnu2.chr5             I 17 C 0
s chlSab2.chr7             135568985 21 + 135778131 TGGGGAGTTAATTTCCTCTCA
i chlSab2.chr7             I 799 C 0
s calJac3.chr3                174043 21 + 190850796 TGGGGAGTTAATTTGCTCTTA
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87831835 578 - 129401213 I
e canFam3.chr16             18126616 702 -  59632846 I

a score=68666.000000
s hg38.chr4_KI270925v1_alt    448320 22 +    555799 CAAGAAAACATGGCTtttcatg
s panTro4.chr4             193160442 22 + 193495092 CAAGAAAACATGGCTtttcatg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198233799 22 + 198332218 CAAGAAAACATGGCTtttcatg
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113905770 22 + 115148730 CAGGAAAACACGGCTtttcatg
i nomLeu3.chr7b            I 731 C 0
s rheMac3.chr5             183823686 22 + 184069350 CAAGAAAACATGGCTTTTCCTG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189216288 22 + 189454096 CAAGAAAACATGGCTTTTCCTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178635326 22 + 178775436 CAAGAAAACATGGCTTTTCCTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135569006 22 + 135778131 CAAGAAAACATGGCTTTTCCTG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3                174064 22 + 190850796 CAAGAAAACATGGCTTTTCATG
i calJac3.chr3             C 0 n 0
e mm10.chr8                 87831835 578 - 129401213 I
e canFam3.chr16             18126616 702 -  59632846 I

a score=327306.000000
s hg38.chr4_KI270925v1_alt    448342 171 +    555799 gcttaagacaataaagatggatttctccctcaatcggtcgggtcagtaggggttcggctccacctggttattcaggatcccaagtgatggacactgacctctcagcaagcggcCCCATTGCCAAGGCGGGGGAACAGCAGAAGTGCAGAACTTCgccgggcgcgggggctc
s panTro4.chr4             193160464 171 + 193495092 gcttaagacaataaagatggatttctccctcaatcagtcgggtcagtaggggttcggctccacctggttattcaggatcccaagtgatggacactgacttctcagcaagtggcCCCATTGTCAAGGCGGGGGAACAGCAGAAGTGCAGAACTTCgctgggctcagtggctc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198233821 171 + 198332218 gcttaagacaataaagatggatttctcgctcaatcagtcgggtcagtaggtgttaggctccacctggttattcaggatcccaagtgatggacactgacttctcagcaagtggccccattgccaaggtGGGGGAACAGCAGAAGTGCAGAACTTCgctgggcgcagtggctc
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113905792 170 + 115148730 gcttaagacaataaagatgtatttcttgctcaatcagtcgggtcagtagg-gttcagctccacctggttattcaggaacccaagtgatagacactgacctctcagcaagtggctccATTGCCAAGGCAGCGGAACAGCAGAAGTGCAGAACTTCgccgggtgcagtggctc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183823708 164 + 184069350 GCTTAAGACCATAAAGACGTATTTCTCACT-AATCAGTCGGGTCAGTGGGGCT--GGCTCCACCTGGTTATTGAGGACCCCAAGCGGCGGACACTCACCTCTCAGGGAGCGGCCCCAGTGCCCTGGCGG-AGAACAGCC-AAGTGCAGAACTT--ccgggcgcggaggctc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189216310 164 + 189454096 GCTTAAGACCATAAAGACGTATTTCTCACT-AATCAGTGGGGTCAGTGGGGCT--GGCTCCACCTGGTTATTGAGGACCCCAAGCGGCGGACACTCACCTCTCAGGGAGCGGCCCCAGTGCCCTGGCGG-AGAACAGCC-AAGTGCAGAACTT--ccgggcgcggaggctc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178635348 164 + 178775436 GCTTAAGACCATAAAGACGTATTTCTCACT-AATCAGTCGGGTCAGTGGGGCT--GGCTCCACCTGGTTATTGAGGACCCCAAGCGGCGGACACTCACCTCTCAGGGAGCGGCCTCAGTGCCCAGGCGG-AGAACAGCC-AAGTGCAGAACTT--CCGGGCGCGGAGGCTC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135569028 164 + 135778131 GCTTAAGACCATAAAGACGTATTTCTCACT-AATCAGTCGGGTCAGTGGGGCT--GGCTCCACCTGGTTATTCAGGACCCCAAGCGGTGGACACTCACCTCTCAGGGAGCGGCCCCAGTGCCCAGGCGG-AGAACAGCC-AAGTGCAGAACTT--ccgggcgcggaggctc
i chlSab2.chr7             C 0 I 146
e mm10.chr8                 87831835 578 - 129401213 I
e canFam3.chr16             18126616 702 -  59632846 I
e calJac3.chr3                174086   0 + 190850796 I

a score=17103.000000
s hg38.chr4_KI270925v1_alt    448513 13 +    555799 acgcctggaatcg
s panTro4.chr4             193160635 13 + 193495092 acgcctggaatcc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198233992 13 + 198332218 acgcctggaatcc
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113905962 13 + 115148730 acgcctggaatcc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183823872 13 + 184069350 ccgcctgtgaccc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189216474 13 + 189454096 ccgcctgtgaccc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178635512 13 + 178775436 ccgcctgtgaccc
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87831835 578 - 129401213 I
e canFam3.chr16             18126616 702 -  59632846 I
e calJac3.chr3                174086  0 + 190850796 I
e chlSab2.chr7             135569192 146 + 135778131 I

a score=493776.000000
s hg38.chr4_KI270925v1_alt    448526 249 +    555799 cagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactgaaaatac--aaaaaaattagctgtgcttggtggc-gaagcctgtacttccagctactggggaggctgaggcgggagaatgccgtgaacccgggaggcggagcttgcagtgagccgagatcgcgcggctgaactccagcctgggcgac--agtgagactccgtcaaa
s panTro4.chr4             193160648 249 + 193495092 cagcactttgggaggccgaggtgggcggatcacgaggtcaggagatcaagaccatcttggctaacacggtgaaaccccgtctctactgaaaatac--aaaaaaattagctgtgcgtggtggc-ggcgcctgtacttccagctactggggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcgcgcggctgaactccagcctgggcggc--agtgagactccatctca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198234005 240 + 198332218 cagcactttgggaggacgaggtgggcggatcacgaggtcaggagatcaagaccatcctggctaacatggtgaaaccccgtctctactgaaaatacaaaaaaaaattagctgtgcatcgcggcgggcacctgtactcc------------aggctgaggcaggagaatggcgtgaacctgagaggcggagcttgcagtgagccgagatcgcgccactgaactccagcctgggcgac--agtgagactccgtctca
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113905975 251 + 115148730 cagcactttgggaggccgagatgggtggatcactaggtcaggagatcgagaccatcctggataacacagtgaaatcccgtctctgctgcaaatac-aaaaaaaattagctgtgcgtggcggcgggcacctgtactcccacctactggggaggctgaggcaagagaatggcgtgaacccgggaggcagagcttgcagtgagccaagatggtgccactgcactccagcctgggcgac--agcgagactccgtctca
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183823885 249 + 184069350 cagcacttcccgaggccgaggcgggcgaatcgcgaggtcaggagatcgggaccatcctggcgaacacggtgaaaccccgtctctactaaaaatac---acaaaattagcggggcgcggtggt-gacgcctgtggtcccagctcctcgggaggccgaggcaggagaatggcgggaaccc-cgggtcggagcttgcagtgagccgagatggcgccaccgcactccagacagggcggcagagccagactccgtctca
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189216487 249 + 189454096 cagcacttcccgaggccgaggcgggcgaatcgcgaggtcaggagatcgggaccatcctggcgaacacggtgaaaccccgtctctactaaaaatac---acaaaattagcggggcgcggtggt-gacgcctgtggtcccagctcctcgggaggccgaggcaggagaatggcgggaaccc-ggggtcggagcttgcagtgagccgagatggcgccaccgcactccagccagggcggcagagccagactccgtctca
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178635525 250 + 178775436 cagcacttccggaggccgaggtgggcgaatcgcgaggtcaggagatcgggaccatcctggcgaacacggtgaaaccccgtctctactaaaaatac---acaaaattagccgggcgcggtggc-gacgcctgtggtcccagctcctcgggaggctgaggcaggagaatggcgggaacccggggggcggagcttgcagtgagccgagatggcgccaccgcactccagcctgggtgacacagcgagactccgtctca
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135569338 246 + 135778131 cagcacttccggaggccgaggc-agcggatcgcgaggtcaggagatggagaccatcctggcgaacacggtgaaaccccgtctctactaaaaat-----acaaaattagccgggcgtggtggc-ggcgcctctggtcccagctcctcgggaggccgaggcgggagaatggcgggaacccggggggcggagcttgcagtgagccgagatggcgccact-cactccagcctgggcgacagagcgagactccgtctca
i chlSab2.chr7             I 146 C 0
e mm10.chr8                 87831835 578 - 129401213 I
e canFam3.chr16             18126616 702 -  59632846 I
e calJac3.chr3                174086   0 + 190850796 I

a score=8852.000000
s hg38.chr4_KI270925v1_alt    448775 3 +    555799 aaa
s panTro4.chr4             193160897 3 + 193495092 aaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198234245 3 + 198332218 aaa
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113906226 3 + 115148730 aaa
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183824134 3 + 184069350 aaa
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189216736 3 + 189454096 aaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178635775 3 + 178775436 aaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135569584 3 + 135778131 aaa
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             18127318 3 -  59632846 aag
i canFam3.chr16            I 702 C 0
e mm10.chr8                 87831835 578 - 129401213 I
e calJac3.chr3                174086 0 + 190850796 I

a score=-9608.000000
s hg38.chr4_KI270925v1_alt    448778 17 +    555799 ---aaaaaaaaaaaaaa-------aC---------A
s panTro4.chr4             193160900  8 + 193495092 ---aaaaaaG-------------------------A
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198234248 21 + 198332218 ---aaaaaaaaaaaaaa-------aaaT-----AGA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113906229 26 + 115148730 ---aaaaaaaaaaaaag-------aaagaaaaaaGA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183824137 19 + 184069350 ---taaataaaTAACTA-------AAAG-------A
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189216739 19 + 189454096 ---taaataaaTAACTA-------AAAG-------A
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178635778 26 + 178775436 ---taaataaataaataaataaataaag-------a
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135569587 19 + 135778131 ---taaataaataaata-------aaaG-------A
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87832413 16 - 129401213 ---GAGGAAAGTAAACA-------CA----------
i mm10.chr8                I 578 C 0
s canFam3.chr16             18127321 17 -  59632846 acagagaagagaaaaca-------------------
i canFam3.chr16            C 0 C 0
e calJac3.chr3                174086  0 + 190850796 I

a score=891315.000000
s hg38.chr4_KI270925v1_alt    448795 295 +    555799 GTGCAGAACTTCCAGCCACTGTTCTATGCTTTACCCCAGAGCTCCCACAAATCAC------ACATTCCCCCTCAGCCCCTACAA-----ATGGCTCCTGTCTGACTAG-AC------ACAAGCTGTGGCATGTGGGTGAGCACACGGGTATTCAGAGAGCATTAAATGTCTCTGAAACATCTGGAATCCTTTTTCGGAAGGTCAGAAATGCTCACACTGCACTCACTCAAAGTCCGG-----------CTCCAGTTT---TAGAGAGAAGACGTACCCTAAGAACCTTGCTC-CTCC---TACCTACTTCCTGGCTTTAGAATTGAAAGCC
s panTro4.chr4             193160908 295 + 193495092 GTGCAGAACTTCCAGCCGCTGTTCTATGCTTTACCCCAGAGCTCGCACAAATCAC------ACATTCCGCCTCAGCCCCTACAA-----ATGGCTCCTGTCTGACTAG-AC------ACAAGCTGTGGCATGTGGGTGAGCACACGGGTATTCAGAGAGCATTAAATGTCTCTGAAACATCTGGAATCCTTTTTCGGAAGGTCAGAAATGCTCACACTGCACTCACTCAAAGTCCGA-----------CTCCAGTTT---TAGAGAGAAGACTTACCCTAAGAACCTTGCTC-CTCC---TACCTACTTCCTGGCTTTAGAATTGAAAGCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198234269 291 + 198332218 GTGCAGAACTTCCAGCTACAGTTCTATGCTTTACCCCAGAGCTCGCACAAATCAC------ACATTCCGCCTCAGCCCCTACAA-----ATGGCTCCTGTCTGACTAG-AC------ACAAGCTGTGGCATGTGGGTGAGCACACGGGTATTCAGAGAGCATTAAATGTCTCTGAAACATCTGGAATCCTTTTTTGGAAGGTCAGAAATCCTCACTCTGCACTCACTCAAGGTCTGG-----------CTCCAGTTT---TAGAGAGAAGACGTACCCTAAGAACCTTGCTC-CT-------CCTACTTCCTGTCTTTAGAATTGAAAGCC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113906255 295 + 115148730 GTGCAGAACTTCCAGCTGCTGTTCTATGCTTTACCCCAGAGCTCGCACAAATCAC------ACATTCCGCCTCAGCCCCTACAA-----ATGGCTCCTGTCTGACTAG-AC------ACAAGCTGTGGCATGTGGGTGAGCACACGGGTATTCAGAGAGCATTAAATGTCTCTGAAACATCTGGAATCCTTTTTCGGAAGGTCAGAAATCCTCACACTGCACTCACTCAAAGTCTGG-----------CTCCAGTTT---TAGAGAGAAGATGTACCGTAAGAAACTTGCTC-CTCC---TACCTACTTCCTGGCTTTAGAATTGAAAGGA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183824156 306 + 184069350 CTGCAGAACTCCCAGCTGCTGCTCTGTGCTGTACCCCGCAGCTTGCACAAATCCC------ACGCTCCACCTCAGCCCCCACAA-----ACGGCTCCTGTCTGACTAG-AC------ACAAGCTGCGCCATGTGGGTGAGCACACGGGTATTCAAAGAACACTAAATGTCTCTGAAACATCTGGAATCCTTTTGCAGAAGGTCAGAAATCCTCACGCTGTACTGACTCAAAGTCTGGCTTGGGATATGCTCCGGTTT---TAGAGAGAAGAAGTACCCAAAGAACCTTGCTC-CTCC---TACCTACTTCCTGGCTTTAGAATTGAAAGCC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189216758 306 + 189454096 CTGCAGAACTCCCAGCTGCTGCTCTGTGCTGTACCCCGCAGCTTGCACAAATCCC------ACGCTCCACCTCAGCCCCCACAA-----ACGGCTCCTGTCTGACTAG-AC------ACAAGCTGCGCCATGTGGGTGAGCACACGGGTATTCAAAGAACACTAAATGTCTCTGAAACATCTGGAATCCTTTTGCAGAAGGTCAGAAATCCTCACGCTGTACTGACTCAAAGTCTGGCTTGGGATATACTCTGGTTT---TAGAGAGAAGAAGTACCCAAAGAACCTTGCTC-CTCC---TACCTACTTCCTGGCTTTAGAATTGAAAGCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178635804 303 + 178775436 ctgcaGAACTCCCAGCTGCTGCTCTGTGCTGTACCCCGCAGCTTGCACAAATCCC------ACgctccacctcagcccccacaa-----aCGGCTCCTGTCTGACTAG-AC------ACAAGCTGCGCCATGTGGGTGAGCACACGGGTATTCAAAGAACACTAAATGTCTCTGAAACATCTGGAATCCTTTTGCAGAAGGTCAGAAATCCTCACGCTGTACTGACTCAAAGTCTGGCTTGGTATATGCTCCGGTTT---TAGAG---AGAAGTACCCAAAGAACCTTGCTC-CTCC---TACCTACTTCCTGGCTTTAGAATTGAAAGCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135569606 304 + 135778131 CTGTAGAACTCCCAGCTGCTGCTCTGTGCTGTACCCCGCAGCTTGCACAAATCCC------ACGCTCTGCCTCAGCCCCCACAA-----ACGGCTCCTGTCTGACTAG-AC------ACTAGCTGCGCCGTGTGGGTGAGCACACGGGTATTCAAAGAACACTAAATGTCTCTGAAACATCTGGAATCCTTTTGCAAACGGTCAGAAATCCTCACGCTGTACTGACTCAAAGTCTGGCTTGGTGTATGCTCCGGTTT---GAGAG--AAGATGTACCCAAAGAACCTTGCTC-CTCC---TACCTACTTCCTGGCTTTAGAATTGAAAGCC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190676950 304 - 190850796 gtggagaaCTTCCAGCTGCTGTTCTGGGCTTTACCCAGCA-CTGGCATAAATCTCAT----ACATTCTGCCTCAGCCAGTACAAATGGCATGGCTCCTATCTGACTAGAAC------ACAAGCTGCAACATGTGAGTGAGCACAGAGATATTCAGAAAGAATTAAATGTCTCTGAAAAACCCAGAAGCCTTTTTCTGAAGGTCAGAAGTCCTCACACTGCACTCAGTT-TGTTCCGG-------TGTGCTCCAGTTT---TAGGGAGAAGATGTGCCCTGAGAA-CTTCCTC-CTCC---TGACTACCTCCTGGCTTCAGAATTGAAAGCC
i calJac3.chr3             I 899 C 0
s mm10.chr8                 87832429 273 - 129401213 ------AACCCCCAGCTGCTATTCCACACCTCAGCCCAGA-TGCACACAGGTGACGTG--GACACTTGGCTGCAGCCAGGAAAA-----ATGGCACCATTTTAACAAA-ACCAGAATAGAAGCCATGGTACATATGTGAACACC----TATGTAGAG-------AATGCTTCAGGAATACATGGAAGCCTTTCTCTGAAGGTCAGAAA---------TAGACTCATTCAAAATCAGG-------TACACTCCAGCTT---TGGAGAAAGGACTGAACAAAAAAGATCTACCCGCTCC---TATCTAA----------TGGAGTTAAAAGCC
i mm10.chr8                C 0 I 596
s canFam3.chr16             18127338 301 -  59632846 ----tgaactc---------agtctaagcttcatcccagaactcacataaatgactttacaacattcagcctcagccagtacaaatgacatggctccaacctaagtagaat------ggaagctgtgaactgtaaGTGAGCAAATTGATATTCAAAGAGTAT--------CCCAGCATACCTGGAATCCTTTTCCTGAAAGTCAGAGACTCTCACACTCTACTCACTCAAAATTAGGTTTGG--TACTCTTCACTTTAGACAGATGAAAACTGTCTTGAAACATGATAGCTC-TTCCTTGTACGTGCCTCCTGCTTTTATAATCAAAAGCC
i canFam3.chr16            C 0 C 0

a score=613019.000000
s hg38.chr4_KI270925v1_alt    449090 205 +    555799 ATTCATCAAAT--GTTCTTGTTTT-TAAAGAAAAATAGAAGGTAATATTTGATTTCTCATTAAAGAGACATTGATGAGAATAGAAAGAGCTCTTGCTTTAGAATAAACAGAACGATCTGACTCTAGCTCTAACCTTTATTGCCCATGATACTGAACATTTCTGTATTTT--------------------GGGATTTTT------TTTACATATTAAT-GAAAAATCAGCTTGTTA
s panTro4.chr4             193161203 205 + 193495092 ATTCATCAAAT--GTTCTTGTTTT-TAAAGAAAAATAGAAGGTAATATTTGATTTCTCATTAAAGAGACATTGATGAGAATAGAAAGAGCTCTTGCTTTAGAATAAACAGAACGATCTGACTCTAGCTCTAACCTTTATTGCCCATGATACTGAACATTTATGTATTTT--------------------GGGATTTTT------TTTAGATATTAAT-GAAAAATCAGCTTATTA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198234560 197 + 198332218 ATTCATCAAAT--GTTCTTGTTTT-TAAAGAAAAATAGAAGGTAACATTTGATTTCTCATTAAAGAGACATTGATGAGAATAGAAAGAGCTCTTGCTTTATAATAAACAGAACGATCTGACCCTAGCTCTAACCTTTATTGGCCATGATACTGAACCTTTCTGTGCTTT--------------------GGGATTTTT--------------TTAAT-GAAAAATCAGCTTGTTA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113906550 204 + 115148730 ATTCATCAAAT--GTTCTTGTTTT-TAAAGAAAAATAGAAGGTAATATTTGATTTCTCATTAAAGAGACATTGATGAGAATAGAACGAGCTCTTGCCTTAGAATAAACAGAACGATCTGACCCTAGCTCTAACGTTTATTGGCCATGATACTGAACCTTTCTGTACTTT--------------------GGGATTTTT-------TTAGATATTAAT-GAAAAATCAGCTTGTTA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183824462 204 + 184069350 ATTCATCCAAT--GTTCTTGTTTTTTAAAGAAAAATAGAAGGTAAGATTTGCTTTCTCATTAAAGAGACATCGATGAGAATAGAAAGAGTTCTTAC-TTAGAATAAACAGAACAATCTGACTCTAACTCTCACCTTTATTGGCCATGATACTGAACCTTTCTGTACTTT--------------------GGGATTTCT--------TAGGTATTAATGGAAAAATCAGCTTGTTA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189217064 204 + 189454096 ATTCATCCAAT--GTTCTTGTTTTTTAAAGAAAAATAGAAGGTAAGATTTGCTTTCTCATTAAAGAGACATCGATGAGAATAGAAAGAGTTCTTAC-TTAGAATAAACAGAACAATCTGACTCTAACTCTCACCTTTATTGGCCATGATACTGAACCTTTCTGTACTTT--------------------GGGATTTCT--------TAGGTATTAATGGAAAAATCAGCTTGTTA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178636107 205 + 178775436 ATTCATCCaat--gttcttgttttttaaagaaaaatagaaggtaAGATTTGCTTTCTCATTAAAGAGACATCGATGAGAATAGAAAGAGTTCTTACTTTAGAATAAACAGAACAATCTGACTCTAACTCTCACCTTTATTGGCCATGATACTGAACCTTTCTGTACTTT--------------------GGGATTTCT--------TAGGTATTAATGGAAAAATCAGCTTGTTA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135569910 205 + 135778131 ATTCATCCAAT--GTTCTTGTTTTCTAAAGAAAAATAGAAAGTAAGATTTGCTTTCTCATTAAAGAGACATCGATGAGAACAGAAAGAGTTCTTACTTTAGAATAAACAGAACAATCTGACTCTAACTCTCACCTTTATTGGCCATGATACTGAACCTTTCTGTACTTT--------------------GGGATTTCT--------TAGGTATTAATGGAAAAATCAGCTTGTTA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190677254 195 - 190850796 ATGCATCACAT--TCTCTTGCTTC-TGAGGAAAAACAGAAAGTAATATCTGATTTCTCATTAAAGAGACATTGATGAGAATAGAAAGAGCTCTTGCTTTAGAATAAGCAAAATGATCTGACCCTAGCTCTAACCTTTATTGGCCATGATACTAAACCTTTCTGGATTTT-------------------------------------TAGGTATCTGTGAAAAAATCAGCTTGTTA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18127639 232 -  59632846 ATTGGTCAAATTGATTCTTGTTTTTCAAAGACAAGTCCAGTGTATCATTTAATTTCTCATTAAAAAGGCACTAATGATAATAGCAAGAGCTCTTGC-TTAAAATAAACAGCAGAATCAGAACATAGCTCTAGCCTTTATTAGCTAAGATGCTTAAC-TTTCTGTACTTCTGTTATTTCAGCTTATTATGGGGATTGTTCTATTATTTAATTCCtttt-taaagatttacttatta
i canFam3.chr16            C 0 I 186
e mm10.chr8                 87832702 596 - 129401213 I

a score=43515.000000
s hg38.chr4_KI270925v1_alt    449295 15 +    555799 GGAAAATTTTCCTAA
s panTro4.chr4             193161408 15 + 193495092 GGAAAATTTTCCTAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198234757 15 + 198332218 TGAAAATTTTCCTAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113906754 15 + 115148730 TGAAAATTTTCCTAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183824666 15 + 184069350 TGAAAATTTTCCTAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189217268 15 + 189454096 TGAAAATTTTCCTAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178636312 15 + 178775436 TGAAAATTTTCCTAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135570115 15 + 135778131 TGAAAATTTTCCTAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190677449 15 - 190850796 TGAAAAATTTTCTGA
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87832702 596 - 129401213 I
e canFam3.chr16             18127871 186 -  59632846 I

a score=974948.000000
s hg38.chr4_KI270925v1_alt    449310 329 +    555799 CTAAATTATAATCTCCTTGAAAGCAGAATCCTCAGCCTAATGCATCTCAAG-ACCTCCTGAAACACCTAGCATGGCCTCCT--TCATGAGCCGAGCTGAGTTACAGCTGCGTC---AGGAGTCCTTTCTC---C-TGCTGG---------------GTGTAGCATGTATTTGTTCTCATCAGGGAAAAGAGACAGCATCTGTCTGGTGCTGATTCATAT--CAAACTGCAGGTTGTAATCATAGTTTTCGACATTTGAGCTTTAGTATTTCTGATTCTGTCAAGTG-GCTTCTGGATCAAACAAACTCTTACCTAGATTAGGGCATGAGGCTTTCATTATTAGCATGTTGGTCTGAA
s panTro4.chr4             193161423 329 + 193495092 CTAAATTATAATCTCCTTGAAAGCAGAATCCTCAGCCTAATGCATCTCAAG-ACCTCCTGAAACACCTAGCATGGCCTCCT--TCATGAGCCGAGCTGAGTTACAGCTGCGTC---AGGAGTCCTTTCTC---C-TGCCGG---------------GTGTAGCATGTATTTGTTCTCATCAGGGAGAAGAGACAGCATCTGTCTGGTGCTGACTCATAT--CAAACTGCAGGTTGTAATCATAGTTTTCGACATTTGAGCTTTAGTATTTCTGATTCTGTCAAGTG-GCTTCTGGATCAAACAAACTCTTACCTAGATGAGGGCATGAGGCTTTCATTATTAGCATGTTGGTCTGAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198234772 325 + 198332218 CTAAATTATAATCTTCTTGAAAGCAGAATCCTCAGCCTAATGCATCTCAAG-ACCTCCTGAAACACCTAGCATGGCGTCCT--TCATGAGCTGTGCTGATTTACAGCTGCATC---AGGAGTCCTTTCTC---C-TGCTGG---------------GTATAGCATGTATTTGCTCTCATCAGGGAGAAGAGATAGCATCTGTCCGGCGCTGACTCATAT--CAAACTGCAGGTTGTAATCATAGTTTTCTACATTTGAGCTTTAGTATTTCTGATTCTGTCAAGTG-ACTTCT-GATCAAACAAACTCTCACCTAGATTAGGGCATGAGGCTTTC---ATTAGCATGTTGATCTGAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113906769 326 + 115148730 CTAAATTATAATCTCCTTGAAAGCAGAATCCTCAGCCTAATGCATCTCAAG-ACCTCCTGAAACACCTAGCATGGCCTCCT--TCATGAGCTGAGCTGATTTACAGCTGCATT---AGGAATCCTTTCTC---C-TGCTGG---------------GTATAGCACGTATTTGTTCTCATTAGGGAGAAGAGACAGCATCTGTCCGGCGCTGACTCATAT--CAAACTGCAGGTTGTAATCATAGTTTTCGACATTTGAGCTTTAGTATTTCTGATTCTGTCAAGTG-GCTTCTGGATCAAACAAACTCTCGCCTAGATTAGGGCATGAGGCTTTC---ATTAGCATGTTGGTCTGAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183824681 341 + 184069350 CTAAATTATAATCTCCTTGAAAGCAGAATCCTCAGCCTAATGCAGCTCAAG-ACCTCCCAAAACACCTAGCATGGCCTCCT--CCATGAGCGGAGCTGACTGACAGCTGCATT---AGGAGCCCTTTCTC---C-TGCTGAAAAGGCTTTGTTCTCATCAGGGAGGTATTTGTTCTCATCAGGGAGAAGAGACAGCATCTGTCCGGCACCGACTCATAT--CAAACCGCAGGTTGCAATCATCGTTTTCGACATTGGAGCTTCAGTATTTCTAATTCTGTCAAGTG-GCTTCTGGCTCAAGCAAGCTCTTGCCTAGATTAGGGCACGAGGCTTTC---ATTAGCATGTTGGTCAGAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189217283 341 + 189454096 CTAAATTATAATCTCCTTGAAAGCAGAATCCTCAGCCTAATGCAGCTCAAG-ACCTCCCGAAACACCTAGCATGGCCTCCT--CCATGAGCGGAGCTGACTGACAGCTGCATT---AGGAGCCCTTTCTC---C-TGCTGAAAAGGCTTTGTTCTCATCAGGGAGGTATTTGTTCTCATCAGGGAGAAGAGACAGCATCTGTCCGGCACCGACTCATAT--CAAACCGCAGGTTGCAATCATCGTTTTCGACATTGGAGCTTCAGTATTTCTAATTCTGTCAAGTG-GCTTCTGGCTCAAGCAAGCTCTTGCCTAGATTAGGGCACGAGGCTTTC---ATTAGCATGTTGGTCAGAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178636327 337 + 178775436 CTAAATTATAATCTCCTTGAAAGCAGAATCCTCAGCCTAATGCAGCTCAAG-ACCTCCCGAAACACCTAGCATGGCCTCCT--CCATGAGCGGAG----CTGACAGCTGCATT---AGGAGCCCTTTCTC---C-TGCTGAAAAGGCTTTGTTCTCATCAGGGAGGTATTTGTTCTCATCAGGGAGAAGAGACAGCATCTGTCCGGCACCGACTCATAT--CAAACCGCAGGTTGCAATCATCGTTTTCGACATTGGAGCTTCAGTATTTCTAATTCTGTCAAGTG-GCTTCTGGCTCAAGCAAGCTCTCGCCTAGATTAGGGCACGAGGCTTTC---ATTAGCATGTTAGTCAGAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135570130 320 + 135778131 CTAAATTATAATCTCCTTGAAAGCAGAATCCTCAGCCTAATGCAGCTCAAG-ACCTCCCGAAACACCTAGCATGGCCTCCT--CCATGAGCGGAGCTGACTGACAGCTGCATT---AGGAGCCCTTTCTC---C-TGCTGAAAAGGCTTTGTTCTCATCAGGGAGG---------------------AGAGACAGCATCTGTCCCGCACCGACTCATAT--CAAACCGCAGGTTGCAATCATGGTTTTCGACATTGGAGCTTCAGTATTTCTAATTCTGTCAAGTG-GCTTCTGGCTCAAGCAAGCTCTCACCTAGATTAGGGCACGAGGCTTTC---ATTAGCATGTTGGTCAGAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190677464 330 - 190850796 CTAAATTATAATCTCCTCGAAAGCAGAATCCTCAGCCTAACTCACCAAAAATACATCCTGAAACACCCGCCATGGCCTCCT--TCATGAGTTGAGCTGATTCGCAGCTGCATTACGAAGAGACATTGATATAGC-TGCTGG---------------GTATACCACCTATTCGTTCTCGTT-GGGAGAACAGGCAGCATCTGTCTAGCACTGACTCATA----AAACTGCAGGTTGTAATCATAGTTTTCGACATTTGAGCTTTGGTATTTCTGATTCTGTCAAGTG-GCTTCTGGATCAACCAAACTCTCGCCTAGATTAGGGCACGAGGCTTTG---ATTAGCATGTTGGTCTGAA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18128057 318 -  59632846 cTAAATGATAACTTACTTAACAAAAGAATAGATATCCTAACACATCTCAGT-ATGTGCCATAACACCTAGCATATCACCCTGCCCAGGTGTTCGGTTGATTTACAGGTACATC---AGGAGTCTTTTTTT---CACATTGG---------------GTATATCATATATTCATTCTCATC-------------AGCATAGATCTGGCATTGACTTTTACAGAAAACTGCAAGTTGTAACCA-AATTTTTGACAGGTAAGTTTCAGTATTTCTGATTCTGTCAAGTGAGCTTCTGGCTCAGGTGAACTCTCCCTTAGCTTAGGGCATGAGGCTTTG---ATTAAGATGTTGATTTGTG
i canFam3.chr16            I 186 C 0
e mm10.chr8                 87832702 596 - 129401213 I

a score=1842936.000000
s hg38.chr4_KI270925v1_alt    449639 606 +    555799  
s panTro4.chr4             193161752 614 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198235097 614 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113907095 614 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183825022 562 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189217624 562 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178636664 562 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135570450 562 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190677794 592 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87833298 598 - 129401213  
i mm10.chr8                I 596 I 3525
s canFam3.chr16             18128375 571 -  59632846  
i canFam3.chr16            C 0 C 0

a score=1552698.000000
s hg38.chr4_KI270925v1_alt    450245 481 +    555799  
s panTro4.chr4             193162366 481 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198235711 481 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113907709 477 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183825584 479 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189218186 479 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178637226 479 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135571012 479 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190678386 481 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18128946 494 -  59632846  
i canFam3.chr16            C 0 I 349
e mm10.chr8                 87833896 3525 - 129401213 I

a score=94943.000000
s hg38.chr4_KI270925v1_alt    450726 32 +    555799 acatcacccttgctctgtatccgcctgcatct
s panTro4.chr4             193162847 32 + 193495092 acatcacctttgctctgtatccgcctgcatct
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198236192 32 + 198332218 acatcacctttgctctgtatctgcctgcatct
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113908186 32 + 115148730 acaacaccttcgatctgtatctgcctgcatct
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183826063 32 + 184069350 acatcacctttgctctgtacctgcctgcatct
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189218665 32 + 189454096 acatcacctttgctctgtacctgcctgcatct
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178637705 32 + 178775436 ACATCACCTTTGCTCTGTACCTGCCTGCATCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135571491 32 + 135778131 acatcacctttgctctgtacctgcctgcatct
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190678867 31 - 190850796 acatcatcttt-ctctgtatctgcctgcatct
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87833896 3525 - 129401213 I
e canFam3.chr16             18129440 349 -  59632846 I

a score=181371.000000
s hg38.chr4_KI270925v1_alt    450758 57 +    555799 acattttttccttatttc---------------tctgtctccaaatgcagtcacattctgagctac-tggagg
s panTro4.chr4             193162879 57 + 193495092 acattttttccttatttc---------------tctgtctccaaatgcagtcacattctgagctac-tggagg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198236224 57 + 198332218 acattttttccttatttc---------------tctgtctccaaatgcagtcacattctgagctac-tggggg
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113908218 56 + 115148730 aca-tttttccttatttc---------------tctgtctccaaatgcagtcacatttcgagctac-tggtgg
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183826095 56 + 184069350 aca-tttctccttatttc---------------tctgtctccaaatgcagtcacattctgagctac-tgggga
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189218697 56 + 189454096 aca-tttctccttatttc---------------tctgtctccaaatgcagtcacattctgagctac-tggggg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178637737 56 + 178775436 ACA-TTTCTCCTTATTTC---------------Tctgtctccaaatgcagtcacattctgagctac-tggggg
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135571523 56 + 135778131 aca-tttctccttatttc---------------tctgtctccaaatgcagtcacattttgcgctac-tggggg
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190678898 57 - 190850796 atattttccccttacttc---------------cctgtctccaaatacagtcacattctgaactac-tggggg
i calJac3.chr3             C 0 I 628
s canFam3.chr16             18129789 73 -  59632846 acatctctgtcttatgtctccagatagtcacattctgtctccaagtacagtcacagtctgaggtaagtagagg
i canFam3.chr16            I 349 C 0
e mm10.chr8                 87833896 3525 - 129401213 I

a score=710908.000000
s hg38.chr4_KI270925v1_alt    450815 227 +    555799 ttaagatttcaagatgtgaattattggagagcacaattcaacTTG-AACAGGTCCCAAAGCAACTTTCATATGG-----------------------TGTGGTGTCTCTGGTACCATGAAAGAAATTGTTTAAAATGATTGCATGATTTTGGGGCCAAGTTCTATCTTTCGAGTGTACACAGatacgtatatgtatttccgacatatgtctatatacatgtacgtgtgtgtgtataCCTTGAAGATTTTGT
s panTro4.chr4             193162936 227 + 193495092 ttaagatttcaagatgtgaattattggagagcacaattcaacTTG-AACAGGTCCCAAAGCAACTTTCATATGG-----------------------TGTGGTGTCTCTGGTACCATGAAAGAAATTGCTTAAAATGATTGCATGATTTTGGGGCCAAGTTCTATCTTTCGAGtgtacacagatatgtatatgtatttccgacatatgtctatatacatgtacgtgtgtgtgtataCCTTAAAGATTTTGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198236281 229 + 198332218 ttaagatttcaagatgtgaattattggacagcgcaattcaacTTG-AACAGGTCCCAAAGCAACTTTCATATGGTGT--------------------TGTGGTGTCTCTGGTACCATGAAAGAAATTGCTTAAAATGATTGCATGATTTTGGGGCCAAGTTCTATCTTTCGAGTGTACACAGATACGTATACGTCTTTATGACATATGT-TATATACATGTACGTGTGTGTGTATACCTTAAAGATTTTGT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113908274 226 + 115148730 ttaagatttcaagatgtgagttattggagagcacaattcaacTTG-AACAGGTCCCAAAGCAACTTTCATATGGTGT--------------------TGTGGTGTCTCTGGTACCATGAAAGAAATTGCTTAAAATGATTGCATGATTTTCGGGCCAAGTTCTATCTTTTGAGTGTACACAGATACGTATATATATTTACGACATATG--TGTATACATGTAC--ATGTGTGTATACCTTAAAGATTTTGT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183826151 226 + 184069350 ttaggatttcaagatgtgaattattggagagcacaattcaacTTG-AACAGGTCCCAAAGCAACTTACAAATGGTGT--------------------TGTGGTGTCTCTGGTACCATGAAAGAAATTGCTTAAAATGATTGCGTGATTGTGAGGCCAAGTTCCATCTTTCGAGtgtacacagatatgtatatgtatttacgacatatg--tgtatacatgtac--atgtgtgtataCCTTAAAGATTTTGT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189218753 226 + 189454096 ttaggatttcaagatgtgaattattggagagcacaattcaacTTG-AACAGGTCCCAAAGCAACTTACAAATGGTGT--------------------TGTGGTGTCTCTGGTACCATGAAAGAAATTGCTTAAAATGATTGCGTGATTGTGAGGCCAAGTTCCATCTTTCGAGTGTACACAGATATGTATATGTATTTACGACATATG--TGTATACATGTAC--ATGTGTGTATACCTTAAAGATTTTGT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178637793 225 + 178775436 ttaggatttcaagaTGTGAATTATTGGAGAGCACAATTCAACTTG-AACAGGTCCC-AAGCAACTTACAAATGGTGT--------------------TGTGGTGTCTCTGGTACCATGAAAGAAATTGCTTAAAATGATTGCGTGATTGTGAGGCCAAGTTCCATCTTTCGAgtgtacacagatatgtatatgtatttatgacatatg--tgtatacatgtac--atgtgtgtatacctTAAAGATTTTGT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135571579 226 + 135778131 ttaggatttcaagatgtgaattattggagagcacaattcaacTTG-GACAGGTCCCAAAGCAACTTATAAACGGTGT--------------------GGTGGTGTCTCTGGTACCATGAAAGAAATTGCTTAAAATGATTGCGTGATTGTGAGGCCAAGTTCCATCTTTTGAGTGTACACAGATATGTATATGTATTTACGACATATG--TGTATACATGTAC--ATGTGTGTATACCTTAAATATTTTGT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190679583 225 - 190850796 TTAGGATTTCGAGATGTGAATTACTGGAGAGCACAATTTAACTCT-AACAGTCCTTAAAGCAACTTGTATATGGTGC--------------------TGTGGTGCCTCTGGTTCCGTGAAAGAAATTGCCTAAAATGACTGCATGATTGTGAGGCCAA-TTCCATCTTTTGAGtgtacacagatatgtatatgtatttacgacatatg--tgtatacgtgtac--gtgcatgtataCCTTAAAGATTTTAT
i calJac3.chr3             I 628 C 0
s canFam3.chr16             18129862 234 -  59632846 ttaaaattgtaacacatgaattattggagtatataattcaacccatgacaGGTCCAAAGGCAATTTACATATGGCTTTATATTGAGAGGCATTTACATATGGTATCTCTGAGGTAGGGAAAGAAATTGCTTAAAAAGATTA--------TTGGGCAAAGTTCCATCTTTTTA-TGCACATAAATATG-gtgtgtgtgtgtg---tgtg--tgtgtTTTGAGAC--ATGAATGGAttttttaaagattttat
i canFam3.chr16            C 0 I 1241
e mm10.chr8                 87833896 3525 - 129401213 I

a score=1718041.000000
s hg38.chr4_KI270925v1_alt    451042 602 +    555799  
s panTro4.chr4             193163163 605 + 193495092  
i panTro4.chr4             C 0 I 272
s ponAbe2.chr4             198236510 606 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113908500 606 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183826377 601 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189218979 601 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178638018 602 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135571805 600 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190679808 567 - 190850796  
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87833896 3525 - 129401213 I
e canFam3.chr16             18130096 1241 -  59632846 I

a score=1005954.000000
s hg38.chr4_KI270925v1_alt    451644 369 +    555799 AACAGGAACAGCAAGACTTGTGAGAAAGGAACTTGTACTAGAACCCTGAGTGGATGACGCAAGAACGAGA--CTCCTGACCACACCT---------------------------------------------------------TCTGCCAGAGCTGGTCTGGTTT-----CCCCGCACA------------------------------------GTTGTGGCAACCTGACCTCCCC-ACAGGCTCATCCCCAGTCTGGTCTTTCCTAGACTTAATGCTGACCTTAGATAGAAAGTACTGAAGGCGGCTTTGGCCAATATCCTTGGGTTGGGCAGCACTGCCTCCTATT-GTCCAGCACAGATATGGCACCGTAGGTTTCACATCTGGGCTTATGCTTCATTCCCAAGATTTATTATTAAGCTTTCACATCACTTGTGTTACCCAGAATCCAAGTCTCTCATTTGGAAAC
s panTro4.chr4             193164040 369 + 193495092 AACAGGAACAGCAAGACTTGTGAGAAAGGAACTTGTACTAGAACCCTCAGTGGATGACGCAAGAACGAGA--CTCCTGACCACACCT---------------------------------------------------------TCTGCCAGAGCTGGTCTGGTTT-----CCCCGCACA------------------------------------GTTGTGGCAACCTGACCTCCCC-ACAGGCTCATCCCCAGTCTGATCTTTCCTAGACTTAATGCTGACCTTAGATAGAAAGTATTGAAGGCGGCTTCGGCCAATATCCTTGGGTTGGGCAGCACTGCCTCGTATT-GTCCAGCACAGATATGGCGCCGTAGGTTTCACATCTGGGCTTATGCTTCATTCCCAAGATTTATTATTGAGCTTTCACATCACTTGTGCTACACAGAGTCCAAGTCTCTCATTTGGAAAC
i panTro4.chr4             I 272 C 0
s ponAbe2.chr4             198237116 369 + 198332218 AACAGGAACAGCAAGACTTGTGAGAAAGGAACTTGGACTAGAACCCTGAGTGGATGATGCAAGAATGAGA--CTCCTGACCACACCT---------------------------------------------------------TCTGCCAGAGCTGGTCTGGTTT-----CCCCGCACA------------------------------------GTTGTGGCAACCTGACCTCCCC-ACAGGCTCATCCCCAGTCTGGTCTTTCCTAGACTTAATGCTGACCTTAGATAGAAAGTATTGAAGGCGGCTTCGGCCAATATCCTTGGGTTGGGCAGCACTGCCTTGTATT-GTCCAGCACAGATATGGTGCCGTAGGTTTCACATCTGGGCTTATGCTTCAGTCCTAAGATCTATTATTGAGCTTTCACATCACTTGTGCTACCCAGAGTCCAAGTCTCTCATTTGGAAAC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113909106 369 + 115148730 AACAAGAACAGCAAGACTTGTGAGAAAGGAACTTGGACTAGAACCCTGAGTGGACGACGTGAGAACGAGA--CTCCTGACCACACCT---------------------------------------------------------TCTGCCACAGCTAGTCTGGTTT-----CCCCTCACA------------------------------------GTTGTGGCAACCTGACCTCCCC-GCAGGCTCATCTCCAGTCTGGTCTTTCCTAGACTTAATGCTGTATTTAGATAGAAAGTATTGAAGAAGGCTTCGGCCAATATCCTTGGGTTGAGCAGCACTGCCTCGTATT-GTCCAGCATGGATATGGTGCCGTAGGTTTCACAGCTGGGCTTATGCTTCATTCCCAAGATTTATTATTGAGCTTTCACATCAGTTGTGCTACCCAGAGTCCAAGTCTCTCATTTGGAAAC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183826978 370 + 184069350 AACAGGAACAGCAAGACTTGTGAGAAAGGAACTTGGACTAGAACCCTGAGTGGATGACGCTGGAATGAAA--CTCCTGACAACAGCT---------------------------------------------------------TCTGCCAGAGCTGATCTGGTTT-----CCCCGCATA------------------------------------GTTGTGGCAACCTGACCTCCCTGGCAGGCTCAGGCCCAGTCTGGTCTTTCCTAGACTTAATGCTGACCTTAGATAGAAAGTATTGAAGAAGGCTTCGGCCAATATCCTTGGGTTGGGCAGCACTGCCCTGTATT-GTCCAGCATGGATATGGTGCCGTAGTTTTCACAGCTGGGCTTGTGCTTCATTCCCAAGATTTATTATTGAGCTTTCATGTCAGTTGTGCTACCCAGATTCCAAGTCTCTCATTTGGAAAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189219580 370 + 189454096 AACAGGAACAGCAAGACTTGTGAGAAAGGAACTTGGACTAGAACCCTGAGTGGATGACGCTGGAATGAAA--CTCCTGACAACAGCT---------------------------------------------------------TCTGCCAGAGCTGATCTGGTTT-----CCCCGCATA------------------------------------GTTGTGGCAACCTGACCTCCCTGGCAGGCTCAGGCCCAGTCTGGTCTTTCCTAGACTTAATGCTGACCTTAGATAGAAAGTATTGAAGAAGGCTTCGGCCAATATCCTTGGGTTGGGCAGCACTGCCCTGTATT-GTCCAGCATGGATATGGTGCCGTAGTTTTCACAGCTGGGCTTGTGCTTCATTCCCAAGATTTATTATTGAGCTTTCATGTCAGTTGTGCTACCCAGATTCCAAGTCTCTCATTTGGAAAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178638620 370 + 178775436 AACAGGAACAGCAAGACTTGTGAGAAAGGAACTTGGACTAGAACCCTGAGTGGATGACGCTGGAATGAAA--CTCCTAACAACAGCT---------------------------------------------------------TCTGCCAGAGCTGATCTGGTTT-----CCCCGCATA------------------------------------GTTGTGGCAACCTGACCTCCCCGGCAGGCTCAGGCCCAGTCTGGTCTTTCCTAGACTTAATGCTGACCTTAGATAGAAAGTATTGAAGAAGGCTTCGGCCAATATCCTTGGGTTGGGCAGCACTGCCCTGTATT-GTCCAGCATGGATATGGTGCCGTAGTTTTCACAGCTGGGCTTGTGCTTCATTCCCAAGATTTATTATTGAGCTTTCATGTCAGTTGTGCTACCCAGATTCCAAGTCTCTCATTTGGAAAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135572405 370 + 135778131 AACAGGAACAGCAGGACTTGTGAGAAAGGAACTTGGACTAGAACCCTGAGTGGATGACGCTGGAATGAGA--CTCCTGACAACAGCT---------------------------------------------------------TCTGCCAGAGCTGGTCTGGTTT-----CCCCGCATA------------------------------------GTTGTGGCAACCTGACCTCCCCGGCAGGCTCAGGCCCAGTCTGGTCTTTCCTAGACTTAATGCTGACCTTAGATAGAAAGTATTGAAGAAGGCTTCGGCCCATATCCTTGGGTTGGGCAGCACTGCCCTGTATT-CTCCAGCATGGATATGGTGCCGTAGTTTTCACAGCTGGGCTTGTGCTTCATTCCCAAGATTTATTATTGAGCTTTCATGTCAGTTGTGCTACCCAGATTCCAAATCTCTCATTTGGAAAC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190680375 446 - 190850796 AACAGGAA---CAAGACTTGTGAGAAAGGAACTTCGACTAGAACCCGAAGTGGACGAC----GAATGAAATTCTCCTGAGGACACCTGCCAGAGCTGATCTGGCCGCCTGACCTCGGACAACAAATGAAATTCTCCTGAGGACACCTGCTGGAGCTGGTCTGGCTGCCTGACCTCGGACAACGAATGAAATTCTCCTGAGGACACCTGCCGGAGCTGGTCTGGCCGCCTGACCTCCCCAGCCTGCTTAGTCCCAGTCTCCTCTTGCCTAGACTCAATGCTGACCTTAGATAGAAAGTATCGAAGAAGACTTAGG-CAATATCC-TAGGTTACGCAACATTGCCTCCTATTAGTCCAGCTTGGA--------------TTTCACAGCTGGGCTTATGCTTCATTCCCAAGATTTGTTACTGAGCTTTCACAGCAGTTGTGCTACTCAGATTCCAAG--TCTAATTTGGAAAC
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87833896 3525 - 129401213 I
e canFam3.chr16             18130096 1241 -  59632846 I

a score=2548.000000
s hg38.chr4_KI270925v1_alt    452013 1 +    555799 A
s panTro4.chr4             193164409 1 + 193495092 A
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198237485 1 + 198332218 A
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113909475 1 + 115148730 A
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183827348 1 + 184069350 A
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189219950 1 + 189454096 A
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178638990 1 + 178775436 A
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135572775 1 + 135778131 A
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87833896 3525 - 129401213 I
e canFam3.chr16             18130096 1241 -  59632846 I
e calJac3.chr3             190680821 0 - 190850796 C

a score=104402.000000
s hg38.chr4_KI270925v1_alt    452014 82 +    555799 TGTCTCTCTCCTCTAGGCTGAGGTCCTGTCTCTCAGAACTTGGGTACCAGCCCCTGACTTCCCTGGGTGCCAAAACCTTGAG
s panTro4.chr4             193164410 82 + 193495092 TGTCTCTCTCCTTTAGGCTGAGGTCCTGTCTCTCAGAACTTGGGTACCAGCCCCTGACCACCCTGGGTGCCAAAACCCTGAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198237486 81 + 198332218 TGTCTCTCTCCTCTAGGCTGAGGTCCTGTCTCTCAGAGCTTGGGTACCAG-CCCTGACCACCCTGGGTGCCAAAACCCTGAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113909476 52 + 115148730 TGTCTCTCTCCTCTAGCCTGAAGTCCTGTCTCTCAGAGCTTGGGTACCAGCC------------------------------
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183827349 13 + 184069350 TGTCTCTCTCCTC---------------------------------------------------------------------
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189219951 82 + 189454096 TGTCTCTCTCCTCTAGCCTGAGGCCCTGTCTCTCAGAGCGTGGGTACCAACCCCTGACCACCGCGGGTGCCAAAACCCTGAG
i macFas5.chr5             C 0 T 99
s papAnu2.chr5             178638991 82 + 178775436 TGTCTCTCTCCTCTAGCCTGAGGCCCTGTCTCTCAGAGCGTGGGTACCAACCCCTGACCACCGCGGGTGCCAAAACCCTGAG
i papAnu2.chr5             C 0 T 99
s chlSab2.chr7             135572776 13 + 135778131 CGTCTCTCTCCTC---------------------------------------------------------------------
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190680821 82 - 190850796 TGTCTCTCTCCTCTAGCCTGAGGTCCTGCCTCTCAGAGCTTGGGTACCAACTCCTGACCACCCTGGGTGCCAAAACCCTGAG
i calJac3.chr3             C 0 T 82
e mm10.chr8                 87833896 3525 - 129401213 I
e canFam3.chr16             18130096 1241 -  59632846 I

a score=14622.000000
s hg38.chr4_KI270925v1_alt    452096 17 +    555799 TCTCTCATTCGGAAACA
s panTro4.chr4             193164492 17 + 193495092 TCTCTCATTTGGAAACA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198237567 17 + 198332218 TCTCTGATTTGGAAACA
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189219934 17 + 189454096 TCTCTCATTTGGAAACA
i macFas5.chr5             T 99 C 0
s papAnu2.chr5             178638974 17 + 178775436 TCTCTCATTTGGAAACA
i papAnu2.chr5             T 99 C 0
e mm10.chr8                 87833896 3525 - 129401213 I
e canFam3.chr16             18130096 1241 -  59632846 I
e calJac3.chr3             190680903 82 - 190850796 T
e chlSab2.chr7             135572789  0 + 135778131 C
e rheMac3.chr5             183827362  0 + 184069350 C
e nomLeu3.chr7b            113909528  0 + 115148730 C

a score=809166.000000
s hg38.chr4_KI270925v1_alt    452113 297 +    555799 TGTCTCTCTCCTTTAGCCTGAGGTCCTGTCTCTCAGAGCTTGGGTACCAACCCCTGACCACCCTGGGTGCCAAAACCCTGAGAAGCGCTGCAAGCCCCCGGCCTGGACGTATTTCTCAACAGAGCCCTTGCTGGGCTTCAATCCTCCTCCACGTCACCTCCATTACTCTGGCAAAACACCTTCCCCTCAGCCACCTCCCACCTAACTCACTGTTCTTGCTCCTTGTCTTCCAGACACTGAGTTCCTCCTGTCAGCCCAGACTCTCGATATGAACATGTAACCAGTATCTGCCCCGTC
s panTro4.chr4             193164509 297 + 193495092 TGTCTCTCTCCTTTAGCCTGAGGTCCTGTCTCTCAGAGCTTGGGTACCAACCCCTGACCACCCTGGGTGCCAAAACCCTGAGAAGCGCTGCAAGCCCTCGGCCTGGACGTATTTCTCAACAGAGCCCTTGCTGGGCTTCAATCCTCCTCCATGTCACCTCCATTACTCTGGCAAAACACCTTCCGCTCAGCCACCTCCCACCTAACTCACTGTTCTTGCTCCTTGTCTTCCAGACACTGAGTTCTTCCTGTCAGCCCAGACTCTCGATATGAACATATAACCAGTATCTACCCTGTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198237584 297 + 198332218 TGTCTCTCTCCTTTAGCCTGAGGTCCTGTCTCTCAGAGCTTGGGTACCAACCCCTGACCACCCTGGGTGCCAAAACCCTGAGAAGTGCTGCAAGCCCCCGGCCTGGATGTATTTCTCAACAGAGCCCTTGCTGGGCTTCAATCCTCCTCCACGTCACCTCCATTACTCTGGCAAAACACCTTCTGCTCAGCCACCTCCCACCTAACTCACTGTTCTTCCTCCTTGTCTTCCAGACACTGGGTTCTTCCTGTCAGCCCAGACTCTCAATATGAACATATAACCAGTATCTGCCCTGTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113909528 245 + 115148730 ----------------------------------------------------CCTGACCACCCTGGGTGCCAAAACCCTAAGAAGCGCTGCAAGCCCCCGGCCTGGATGTATTTCTCAAGAGAGCCCTTGCTGGGCTTCAATCCTCCTCCATGTCACCTCCATTACTCTGGCAAAACACCTTCCACTCAGCCACCTCCCACCTAACTCACTGTTCTTGCTCCTTGTCTTCCAGACACTGGGTTCTTCCTGTCAGCCCAGACTCTCGATGTGAACATATAACCAGTATCTGCCCCATC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183827362 283 + 184069350 -------------TAGCCTGAGGCCCTGTCTCTCAGAGCGTGGGTACCAACCCCTGACCACCGCGGGTGCCAAAACCCTGAGAAACGCTGCAAGCCCCT-ACCTGGATGTATTTCTCAACAGAGCCCTCGCTGGGCTTCATTCCTCCTCCATGTCACCCCCATTACTCTGGCAAAACACCTTCCACTTAGCCACCTCCCACCTAACTCACTGTTCTTGCTCCTTGTCTTCCAGTCACTGGGTTCTTCCTGTCAGCCCAGACTCTCGATGTGAACATGTAACCAGTATCTGCCCCATC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189219951 296 + 189454096 TGTCTCTCTCCTCTAGCCTGAGGCCCTGTCTCTCAGAGCGTGGGTACCAACCCCTGACCACCGCGGGTGCCAAAACCCTGAGAAACGCTGCAAGCCCCT-ACCTGGATGTATTTCTCAACAGAGCCCTCGCTGGGCTTCATTCCTCCTCCATGTCACCCCCATTACTCTGGCAAAACACCTTCCACTTAGCCACCTCCCACCTAACTCACTGTTCTTGCTCCTTGTCTTCCAGTCACTGGGTTCTTCCTGTCAGCCCAGACTCTCGATGTGAACATGTAACCAGTATCTGCCCCATC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178638991 296 + 178775436 TGTCTCTCTCCTCTAGCCTGAGGCCCTGTCTCTCAGAGCGTGGGTACCAACCCCTGACCACCGCGGGTGCCAAAACCCTGAGAAACGCTGCAAGCCCCT-ACCTGGATGTATTTCTCAACAGAGCCCTCGCTGGGCTTCATTCCTCCTCCATGTCACCCCCATTACTCTGGCAAAACACCTTCCACTTAGCCACCTCCCACCTAACTCACTGTTCTTGCTCCTTGTCTTCCAGTCACTGGGTTCTTCCTATCAGCCCAGACTCTCAATGTGAACATGTAACCAGTATCTGCCCCATC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135572789 283 + 135778131 -------------TAGCCTGAGGCCCTGTCTCTCAGAGCGTGGGTACCAACCCCTGACCACCGCGGGTGCCAAAACCCTGAGAAACGCTGCAAGCCCCT-GCCTGGATGTATTTCTCAACAGAGCCCTCGCTGGGCTTCATTCCTCCTCCATGTCACCCCCATTACTCTGGCAAAACACCTTCCACTTAGCCACCTCCCAGCTAACTCACTGTTCTTGCTCCTTGTCTTCCAGTCACTGGGTTCTTCCTGTCAGCCCAGACTCTCGATGTGAACATGTAACCAGTATCTGCCCCATC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190680821 277 - 190850796 TGTCTCTCTCCTCTAGCCTGAGGTCCTGCCTCTCAGAGCTTGGGTACCAACTCCTGACCACCCTGGGTGCCAAAACCCTGAGAAGTGCTGCAAGCCCCT-GCCTGGATATGTGTCTCGACGGTGC-----------------CCTCCTCCAAGTCACCCTCACTACTCAGGCCAAACACCTTTCACTCAGCCA-CTCTCACCTAACTGGCTGTCCGTG-TCCTTGTCTTCCAGACACTGGGCCTTTCCTGTCAGCCCAGACCCTTCATGTGATCATATAACCCGTATCTGTCCCGTC
i calJac3.chr3             T 82 T 41
e mm10.chr8                 87833896 3525 - 129401213 I
e canFam3.chr16             18130096 1241 -  59632846 I

a score=44336.000000
s hg38.chr4_KI270925v1_alt    452410 19 +    555799 CTTGTAAGGGGATTTGTCT
s panTro4.chr4             193164806 19 + 193495092 CTTGTAAGGGGATTTGTCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198237881 19 + 198332218 CTTGTAAGGGGATTTGTCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113909773 19 + 115148730 CTTATAAGGGGATTTCTCT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183827645 19 + 184069350 CTTGTAAGGGGATTTGTGT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189220247 19 + 189454096 CTTGTAAGGGGATTTGTGT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178639287 19 + 178775436 CTTGTAAGGGGATTTGTGT
i papAnu2.chr5             C 0 T 60
s chlSab2.chr7             135573072 19 + 135778131 CTTGTAAGGGGATTTGTGT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87833896 3525 - 129401213 I
e canFam3.chr16             18130096 1241 -  59632846 I
e calJac3.chr3             190681098 41 - 190850796 T

a score=8370.000000
s hg38.chr4_KI270925v1_alt    452429 9 +    555799 CTGTTTTAA
s panTro4.chr4             193164825 9 + 193495092 CTGTTTTAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198237900 9 + 198332218 CTGTTTTAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113909792 9 + 115148730 CTGTTTTAA
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189220266 9 + 189454096 Ctgttttaa
i macFas5.chr5             C 0 C 0
e mm10.chr8                 87833896 3525 - 129401213 I
e canFam3.chr16             18130096 1241 -  59632846 I
e calJac3.chr3             190681098 41 - 190850796 T
e chlSab2.chr7             135573091 0 + 135778131 C
e papAnu2.chr5             178639306 60 + 178775436 T
e rheMac3.chr5             183827664 0 + 184069350 C

a score=4761.000000
s hg38.chr4_KI270925v1_alt    452438 3 +    555799 CAG
s panTro4.chr4             193164834 3 + 193495092 CAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198237909 3 + 198332218 CAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113909801 3 + 115148730 CAG
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189220275 3 + 189454096 gag
i macFas5.chr5             C 0 T 69
s papAnu2.chr5             178639246 3 + 178775436 CAG
i papAnu2.chr5             T 60 C 0
s calJac3.chr3             190681057 3 - 190850796 CAG
i calJac3.chr3             T 41 C 0
e mm10.chr8                 87833896 3525 - 129401213 I
e canFam3.chr16             18130096 1241 -  59632846 I
e chlSab2.chr7             135573091 0 + 135778131 C
e rheMac3.chr5             183827664 0 + 184069350 C

a score=62787.000000
s hg38.chr4_KI270925v1_alt    452441 38 +    555799 ACTCTGGATGTGAACATAGAACCAGTATCTGCCCCGTC
s panTro4.chr4             193164837 38 + 193495092 ACTCTGGATGTGAACATATAACCAGTATCTGCCCCGTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198237912 38 + 198332218 ACTCTGGATGTGAACATATAACCAGTATCTGCCCCGTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113909804 38 + 115148730 ACTCTTGATGTGAACATATAACCAGTATCTGCCCCATC
i nomLeu3.chr7b            C 0 T 69
s macFas5.chr5             189220209 38 + 189454096 ACTCTCGATGTGAACATGTAACCAGTATCTGCCCCATC
i macFas5.chr5             T 69 C 0
s papAnu2.chr5             178639249 38 + 178775436 ACTCTCAATGTGAACATGTAACCAGTATCTGCCCCATC
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190681060 38 - 190850796 ACCCTTCATGTGATCATATAACCCGTATCTGTCCCGTC
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87833896 3525 - 129401213 I
e canFam3.chr16             18130096 1241 -  59632846 I
e chlSab2.chr7             135573091  0 + 135778131 C
e rheMac3.chr5             183827664  0 + 184069350 C

a score=27129.000000
s hg38.chr4_KI270925v1_alt    452479 16 +    555799 CTTGTAAGGGGATTTG
s panTro4.chr4             193164875 16 + 193495092 CTTGTAACTGGATTTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198237950 16 + 198332218 CTTGTAAGGGGATTTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113909773 16 + 115148730 CTTATAAGGGGATTTC
i nomLeu3.chr7b            T 69 C 0
s macFas5.chr5             189220247 16 + 189454096 CTTGTAAGGGGATTTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178639287 16 + 178775436 CTTGTAAGGGGATTTG
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190681098 16 - 190850796 CTTGTAAGGGGATTTG
i calJac3.chr3             C 0 T 57
e mm10.chr8                 87833896 3525 - 129401213 I
e canFam3.chr16             18130096 1241 -  59632846 I
e chlSab2.chr7             135573091  0 + 135778131 C
e rheMac3.chr5             183827664  0 + 184069350 C

a score=5295.000000
s hg38.chr4_KI270925v1_alt    452495 5 +    555799 TCTCT
s panTro4.chr4             193164891 5 + 193495092 TCTCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198237966 5 + 198332218 TCTCt
i ponAbe2.chr4             C 0 T 69
s nomLeu3.chr7b            113909789 5 + 115148730 TCTCT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189220263 5 + 189454096 TGTCt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178639303 5 + 178775436 TGTCT
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87833896 3525 - 129401213 I
e canFam3.chr16             18130096 1241 -  59632846 I
e calJac3.chr3             190681114 57 - 190850796 T
e chlSab2.chr7             135573091 0 + 135778131 C
e rheMac3.chr5             183827664 0 + 184069350 C

a score=9690.000000
s hg38.chr4_KI270925v1_alt    452500 7 +    555799 GTTTTAA
s panTro4.chr4             193164896 7 + 193495092 GTTTTAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198237902 7 + 198332218 GTTTTAA
i ponAbe2.chr4             T 69 C 0
s nomLeu3.chr7b            113909794 7 + 115148730 GTTTTAA
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189220268 7 + 189454096 gttttaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178639308 7 + 178775436 GTTTTAA
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87833896 3525 - 129401213 I
e canFam3.chr16             18130096 1241 -  59632846 I
e calJac3.chr3             190681114 57 - 190850796 T
e chlSab2.chr7             135573091 0 + 135778131 C
e rheMac3.chr5             183827664 0 + 184069350 C

a score=3785.000000
s hg38.chr4_KI270925v1_alt    452507 3 +    555799 CAG
s panTro4.chr4             193164903 3 + 193495092 CAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198237909 3 + 198332218 CAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113909801 3 + 115148730 CAG
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189220275 3 + 189454096 gag
i macFas5.chr5             C 0 T 69
s papAnu2.chr5             178639315 3 + 178775436 AAG
i papAnu2.chr5             C 0 T 69
s calJac3.chr3             190681057 3 - 190850796 CAG
i calJac3.chr3             T 57 C 0
e mm10.chr8                 87833896 3525 - 129401213 I
e canFam3.chr16             18130096 1241 -  59632846 I
e chlSab2.chr7             135573091 0 + 135778131 C
e rheMac3.chr5             183827664 0 + 184069350 C

a score=62001.000000
s hg38.chr4_KI270925v1_alt    452510 38 +    555799 ACTCTGGATGTGAACATAGAACCAGTATCTGCCCCGTC
s panTro4.chr4             193164906 38 + 193495092 ACTCTGGATGTGAACATATAACCAGTATCTGCCCTGTC
i panTro4.chr4             C 0 T 69
s ponAbe2.chr4             198237912 38 + 198332218 ACTCTGGATGTGAACATATAACCAGTATCTGCCCCGTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113909804 38 + 115148730 ACTCTTGATGTGAACATATAACCAGTATCTGCCCCATC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189220209 38 + 189454096 ACTCTCGATGTGAACATGTAACCAGTATCTGCCCCATC
i macFas5.chr5             T 69 C 0
s papAnu2.chr5             178639249 38 + 178775436 ACTCTCAATGTGAACATGTAACCAGTATCTGCCCCATC
i papAnu2.chr5             T 69 C 0
s calJac3.chr3             190681060 38 - 190850796 ACCCTTCATGTGATCATATAACCCGTATCTGTCCCGTC
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87833896 3525 - 129401213 I
e canFam3.chr16             18130096 1241 -  59632846 I
e chlSab2.chr7             135573091  0 + 135778131 C
e rheMac3.chr5             183827664  0 + 184069350 C

a score=27323.000000
s hg38.chr4_KI270925v1_alt    452548 16 +    555799 CTTGTAACCGGATTTG
s panTro4.chr4             193164875 16 + 193495092 CTTGTAACTGGATTTG
i panTro4.chr4             T 69 C 0
s ponAbe2.chr4             198237950 16 + 198332218 CTTGTAAGGGGATTTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113909842 16 + 115148730 CTTGTAAGGGGATTTG
i nomLeu3.chr7b            C 0 T 126
s macFas5.chr5             189220247 16 + 189454096 CTTGTAAGGGGATTTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178639287 16 + 178775436 CTTGTAAGGGGATTTG
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190681098 16 - 190850796 CTTGTAAGGGGATTTG
i calJac3.chr3             C 0 T 16
e mm10.chr8                 87833896 3525 - 129401213 I
e canFam3.chr16             18130096 1241 -  59632846 I
e chlSab2.chr7             135573091  0 + 135778131 C
e rheMac3.chr5             183827664  0 + 184069350 C

a score=9840.000000
s hg38.chr4_KI270925v1_alt    452564 12 +    555799 TCTCTGTTTTAA
s panTro4.chr4             193164891 12 + 193495092 TCTCTGTTTTAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198237966 12 + 198332218 TCTCtgttttaa
i ponAbe2.chr4             C 0 T 69
s macFas5.chr5             189220263 12 + 189454096 TGTCtgttttaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178639303 12 + 178775436 TGTCTGTTTTAA
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87833896 3525 - 129401213 I
e canFam3.chr16             18130096 1241 -  59632846 I
e calJac3.chr3             190681114 16 - 190850796 T
e chlSab2.chr7             135573091  0 + 135778131 C
e rheMac3.chr5             183827664  0 + 184069350 C
e nomLeu3.chr7b            113909858 126 + 115148730 T

a score=2478.000000
s hg38.chr4_KI270925v1_alt    452576 3 +    555799 CAG
s panTro4.chr4             193164903 3 + 193495092 CAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198237909 3 + 198332218 CAG
i ponAbe2.chr4             T 69 C 0
s nomLeu3.chr7b            113909732 3 + 115148730 CAG
i nomLeu3.chr7b            T 126 C 0
s macFas5.chr5             189220275 3 + 189454096 gag
i macFas5.chr5             C 0 T 69
s papAnu2.chr5             178639315 3 + 178775436 AAG
i papAnu2.chr5             C 0 T 69
e mm10.chr8                 87833896 3525 - 129401213 I
e canFam3.chr16             18130096 1241 -  59632846 I
e calJac3.chr3             190681114 16 - 190850796 T
e chlSab2.chr7             135573091 0 + 135778131 C
e rheMac3.chr5             183827664 0 + 184069350 C

a score=45765.000000
s hg38.chr4_KI270925v1_alt    452579 37 +    555799 ACTCTGGATGTGAACATATAACGAGTATCTGCCCTGT
s panTro4.chr4             193164906 37 + 193495092 ACTCTGGATGTGAACATATAACCAGTATCTGCCCTGT
i panTro4.chr4             C 0 I 1
s ponAbe2.chr4             198237912 37 + 198332218 ACTCTGGATGTGAACATATAACCAGTATCTGCCCCGT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113909735 37 + 115148730 ACTCTCGATGTGAACATATAACCAGTATCTGCCCCAT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189220209 37 + 189454096 ACTCTCGATGTGAACATGTAACCAGTATCTGCCCCAT
i macFas5.chr5             T 69 C 0
s papAnu2.chr5             178639249 37 + 178775436 ACTCTCAATGTGAACATGTAACCAGTATCTGCCCCAT
i papAnu2.chr5             T 69 C 0
e mm10.chr8                 87833896 3525 - 129401213 I
e canFam3.chr16             18130096 1241 -  59632846 I
e calJac3.chr3             190681114 16 - 190850796 T
e chlSab2.chr7             135573091  0 + 135778131 C
e rheMac3.chr5             183827664  0 + 184069350 C

a score=476.000000
s hg38.chr4_KI270925v1_alt    452616 1 +    555799 T
s ponAbe2.chr4             198237949 1 + 198332218 C
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113909772 1 + 115148730 C
i nomLeu3.chr7b            C 0 I 69
s macFas5.chr5             189220246 1 + 189454096 C
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178639286 1 + 178775436 C
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87833896 3525 - 129401213 I
e canFam3.chr16             18130096 1241 -  59632846 I
e calJac3.chr3             190681114 16 - 190850796 T
e chlSab2.chr7             135573091 0 + 135778131 C
e rheMac3.chr5             183827664 0 + 184069350 C
e panTro4.chr4             193164943 1 + 193495092 I

a score=33078.000000
s hg38.chr4_KI270925v1_alt    452617 17 +    555799 CTTGTAAGGGGATTTGT
s panTro4.chr4             193164944 17 + 193495092 CTCGTAAGGGGATTTGT
i panTro4.chr4             I 1 C 0
s ponAbe2.chr4             198237950 17 + 198332218 CTTGTAAGGGGATTTGT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113909842 17 + 115148730 CTTGTAAGGGGATTTGT
i nomLeu3.chr7b            I 69 C 0
s macFas5.chr5             189220247 17 + 189454096 CTTGTAAGGGGATTTGT
i macFas5.chr5             C 0 I 14
s papAnu2.chr5             178639287 17 + 178775436 CTTGTAAGGGGATTTGT
i papAnu2.chr5             C 0 I 2
s calJac3.chr3             190681098 17 - 190850796 CTTGTAAGGGGATTTGT
i calJac3.chr3             T 16 C 0
e mm10.chr8                 87833896 3525 - 129401213 I
e canFam3.chr16             18130096 1241 -  59632846 I
e chlSab2.chr7             135573091  0 + 135778131 C
e rheMac3.chr5             183827664  0 + 184069350 C

a score=5348.000000
s hg38.chr4_KI270925v1_alt    452634 2 +    555799 Ct
s panTro4.chr4             193164961 2 + 193495092 Ct
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198237967 2 + 198332218 CT
i ponAbe2.chr4             C 0 I 2
s nomLeu3.chr7b            113909859 2 + 115148730 Ct
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183827664 2 + 184069350 Ct
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178639306 2 + 178775436 CT
i papAnu2.chr5             I 2 C 0
s chlSab2.chr7             135573091 2 + 135778131 Ct
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190681115 2 - 190850796 Ct
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87833896 3525 - 129401213 I
e canFam3.chr16             18130096 1241 -  59632846 I
e macFas5.chr5             189220264 14 + 189454096 I

a score=21830.000000
s hg38.chr4_KI270925v1_alt    452636 10 +    555799 gttttaaaat
s panTro4.chr4             193164963 10 + 193495092 gttttaaaat
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198237971 10 + 198332218 gttttaaaat
i ponAbe2.chr4             I 2 C 0
s nomLeu3.chr7b            113909861 10 + 115148730 gttttaaaat
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183827666 10 + 184069350 gttttaagag
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178639308 10 + 178775436 GTTTTAAAAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135573093 10 + 135778131 gttttaaaag
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190681117 10 - 190850796 gttttaaaat
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87833896 3525 - 129401213 I
e canFam3.chr16             18130096 1241 -  59632846 I
e macFas5.chr5             189220264 14 + 189454096 I

a score=4849861.000000
s hg38.chr4_KI270925v1_alt    452646 1789 +    555799  
s panTro4.chr4             193164973 1795 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198237981 1794 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113909871 1797 + 115148730  
i nomLeu3.chr7b            C 0 I 171
s rheMac3.chr5             183827676 1835 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189220278 1879 + 189454096  
i macFas5.chr5             I 14 C 0
s papAnu2.chr5             178639318 1820 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135573103 1783 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190681127 1730 - 190850796  
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87833896 3525 - 129401213 I
e canFam3.chr16             18130096 1241 -  59632846 I

a score=1205086.000000
s hg38.chr4_KI270925v1_alt    454435 442 +    555799 agcgagctataagagaccggcgctctccaccgcacagcacagagggaaggcccaaagctgagagtggagcagactttgagaaacactttgggg--aactgtccccacatcaaatacacaggattgctagaggaatctgaagactgtggatcatggaggataattataggaactacaaatctcaaacccttcccaactcctcactagatgaacacaaatgcccacactaaaggcctcgc---agatcacccacttccacacacaaaaactatctagctttgtctctactgtcctgaacaagatgtctgactttccaacaaaaaattacaaggcatgtgaaaagacag--aaaaaaaacaatgcgctgccaagagacaaagaaatcTGCAgccaggtgccatggctcatgcctgtaatcccagcactttgggaggctgaggcgggtggatc
s panTro4.chr4             193166768 442 + 193495092 agcgagctataagagaccggcgctctccaccgcacagcacagagggaaggcccaaagctgagagtggagcagactttgagaaacactttgggg--aactgtccccacatcaaatacacaggattgctagaggaatctgaagactgtggatcatggaggataattgtaggaactacaaatctcaaacccttcccaactcctcactagatgaacacaaatgcccacactaaaggccttgc---agatcacccacttccacacacaaaaactatctagctcggtctctactgtcctgaacaagatgtctgactttccaacaaaaaattacaaggcatgtgaaaagacag--aaaaaaaacaatgcgctgccaagagacaaagaaatcTGCAgccaggtgccatggctcatgcctgtaatcccagcactttgggaggctgaggtgggcagatc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198239775 444 + 198332218 agcgagctataagagaccggcgctctccaccgcacagcacagagggaaggcccaaagctgagagtggagcagactttgagaaacactttgggg--aactgtccccacatcaaatacagaggattgctagaggaatctgaagactgtggatcacggaggataattataggaaccacaaatctcaaacccctcccaactcctcactagatgaacacaaatgcccacactaaaggcctagc---agatcacccacttccacacacaaaaactatctagctcagtctctactgtcctgaacaagatgtctgactttccaacaaaaaattacaaggcatgtgaaaatacaggaaaaaaaaacaatgtgccgccaacagacaaagaaatcTGCagccaggtgccctagctcacgcctgtaatcccagcactttggaaggctgaggtgggcagatc
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113911839 439 + 115148730 AGTGAGCTAT--gagaccggcgctctccatcacacagcacagagggaaggcccaaagatgagagtggagcagattttgagaaacacttcgggg--atctgtccccacatcaaacacacaggattgatagaggaatttgaagactgtgtatcatggaggataaatacaggaaccacaaatctcaaacccctcccaactcctcattagacgaacacaaatgcccacactaaaggcctagc---agatcacccacttccacacacaaaatctatctagatcagtctctactgtcctgaacaagatgtctgactttccgacaaaaaattacaaggcatgtgaaaagacag---aaaaaaacaatgcgctgccaagaaacaaagaaatcTGCAgccaggtgccgcggctcgcgcctgtaatcccagcacttcgggaggctgaggtgggcagatc
i nomLeu3.chr7b            I 171 C 0
s rheMac3.chr5             183829511 442 + 184069350 ggagagctagaagagaccgctgctctccactgcacagcgtggagggagggcctaatgctgagagtggagcagactttgagaaacacgttgggggaaactgtccccacatcaaatacagaggatcgctagaggaatctgaagactgtggagcgtggaggataattacagcaaccataaatctcagacccctcccaactcctcaccagatgaacacaaatgcccacactaaaggccccac---agaacacccacttccacacataaaaacc-tctagctcagtctctactgtcctgaaaaagatgtgtgactttccaacaaaaaattacaaggtacgtgaaaagacag---aaacaaacaatgcgctgccaagagacaaagaaatcTGCAgccgggggtggtggctcacacctgtaatcccagcactttgggaggctgaggcgggtggatc
i rheMac3.chr5             C 0 I 1229
s macFas5.chr5             189222157 442 + 189454096 ggagagctagaagagaccgctgctctccactgcacagcgtggagggagggcctaatgctgagagtggagcagactttgagaaacacgttgggggaaactgtccccacatcaaatacagaggatcgctagaggaatctgaagactgtggagcgtggaggataattacagcaaccataaatctcagacccctcccaactcctcaccagatgaacacaaatgcccacactaaaggccccac---agaacacccacttccacacataaaaacc-tctagctcagtctctactgtcctgaaaaagatgtgtgactttccaacaaaaaattacaaggtacgtgaaaagacag---aaacaaacaatgcgctgccaagagacaaagaaatctgcagccgggggtggtggctcacacctgtaatcccagcactttgggaggctgaggcgggtggatc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178641138 442 + 178775436 GGAGAGCTAGAAGAGACCGGTGCTCTCCACTGCACAGCGTGGAGGGAGGGCCTAATGCTGAGAGTGGAGCAGACTTTGAGAAACACgttgggggaaactgtccccacaTCAAATACAGAGGATCGCTAGAGGAATCTGAAGACTGTGGAGCGTGGAGGATAATTACAGCAACCATAAATCTCAGACCCCTCCCAACTCCTCACCAGATGAACACAAATGCCCACACTAAAGGCCCCAC---AGAACACCCACTTCCACATATAAAAACC-TCTAGCTCAGTCTCTACTGTCCTGAAAAAGATGTGTGACTttccaacaaaaaattacaaggtacgtgaaaagacaa---aaacaaacaatgcactgccaagagacaaagaaatctgcagccgggggtggtggctcacacctgtaatcccagcactttgggaggctgaggcgggtggatc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135574886 439 + 135778131 ggagagctagaagagaccggtgctctccactgcacagcatggagggagggcctaatgctgagagtggagcagactttgagaaacacgttgggggaaactgtccccacatcgaatacagaggatcgctagaggaatctgaagactgtggagcgtggaggataattacagcaaccacaaatctcagacccctcccaactcctcaccagatgaacacaaatgcccacagtaaaggccccac---agaacacccacttccacacataaaaacc-tctagctcagtctctattgtcctgaacaagatgtgtgactttccaacaaaaaattacaaggtatgtgaaaagacag---aaacaaacaatgcgctgccaagagac---gaaatctgcagctgggggtggtggctcacacctgtaatcccagcattttgggaggctgcggtgggtggatc
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190682857 428 - 190850796 ---gagctgtcagagacgggtgctcgctagggcatggcatgaagggaaggcc-aaggctgagagcgcagcagactttgagaaacacttctgggaaatctgtccccacatcaaatac-----------agaggaatttgaagactgtggagcatggaggacacctacagcaactacaaatctcaaacccctcccagctcctcactacatgaatgcaaatgcccacattaccggcctagcagtagagcacccacttccacacataaaagctatctaggtcaatctctactgtcctgaacaagatgtc-aactttccaacaaaaaattacaa-gtatgtgaaaagatgg----caaaatcaatgcactgtcaagagacaaggaaatcTGCggccaggcacggtggctgacgcctgtaatcccagcactttgggaggccgaggcgggcagatc
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87833896 3525 - 129401213 I
e canFam3.chr16             18130096 1241 -  59632846 I

a score=333592.000000
s hg38.chr4_KI270925v1_alt    454877 157 +    555799 acctgaggtcaggagtttgggaacaccctggccaacatggtgaaaccccgtctctactaaaaatacaacaaaattagctaggcgtggtggtgcatgcctgtaatcccagcaacttgggaggctgaggcaggagaatcgcttgaacccaggaggcgga
s panTro4.chr4             193167210 156 + 193495092 acctgaggtcaggag-ttgggaacaccctggccaacatggtgaaaccccgtctctactaaaaatacaacaaaattagctaggcgtggtggtgcatgcctgtaatcccagcaacttgggaggctgaggcaggagaatcgcttgaacccaggaggcgga
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198240219 157 + 198332218 acctgaggtcaggagtttgggaccaccctggccaacatggtgaaaccccgtctctactaaaaatacaacaaaattagctgggcatggtggtgcgtgcctataatcccagcaacttgggaggctgaggcaggagaatcacttgaacccaagaggcgga
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113912278 157 + 115148730 acctgagatcaggagtttgggaccaccctggctaacatggtgaaaccccatctctactaaaaatactacaaaattagctgggcgtggtggtgcgtgcctgtaatcccagcaacttgggaggctgaggcaggagaatcgcttgaacccaggaggtaga
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189222599 155 + 189454096 acctgaggtcaggagtttaggaccagcctgaccaatatggtgaaaccccatctctactaaaaacaca--aaaattatccgggcgtggtggtgcacacctgtagtcccagctactcgggaggctgaggcaggagaattacttgaacacgggaggcgga
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178641580 155 + 178775436 acctgaggtcaggagtttaggaccagcctgaccaatatggtgaaaccccatctctactaaaaacaca--aaaattatccgggcgtggtggtgcacacctgtagtcccagctactcgggaggctgaggcaggagaatcacttgaacccgggaggcgga
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135575325 155 + 135778131 atctgaggtcaggagtttaggactagcctgaccaatatgatgaaaccccatctctactaaaaacaca--aaaattatctgggcgtggtggtgcacacctgtagtcccagctacttgggaggctgaggcaggagaatcacttgaacccgggaggcgga
i chlSab2.chr7             C 0 I 1186
s calJac3.chr3             190683285 155 - 190850796 acctgaggtcaggagtccaagaccagcctggtcaacatgttgttgcat--tttctactaaaaatacaacaaaattagctgggcgcagtggtgaatacttgtaatcccagctactcgggaggctgaggcaggagaatcacttgaacccaggagacaga
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87833896 3525 - 129401213 I
e canFam3.chr16             18130096 1241 -  59632846 I
e rheMac3.chr5             183829953 1229 + 184069350 I

a score=9525.000000
s hg38.chr4_KI270925v1_alt    455034 7 +    555799 agttgca
s panTro4.chr4             193167366 7 + 193495092 agttgca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198240376 7 + 198332218 agttgca
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113912435 7 + 115148730 agctgca
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189222754 7 + 189454096 gcttgca
i macFas5.chr5             C 0 I 1153
s papAnu2.chr5             178641735 7 + 178775436 gcttgca
i papAnu2.chr5             C 0 I 866
s calJac3.chr3             190683440 7 - 190850796 ggttgca
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87833896 3525 - 129401213 I
e canFam3.chr16             18130096 1241 -  59632846 I
e chlSab2.chr7             135575480 1186 + 135778131 I
e rheMac3.chr5             183829953 1229 + 184069350 I

a score=5144.000000
s hg38.chr4_KI270925v1_alt    455041 7 +    555799 ctgtgcc
s panTro4.chr4             193167373 7 + 193495092 ctgtgcc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198240383 7 + 198332218 ctgtgcc
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113912442 7 + 115148730 ctgtgcc
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190683447 7 - 190850796 atgggcc
i calJac3.chr3             C 0 I 2814
e mm10.chr8                 87833896 3525 - 129401213 I
e canFam3.chr16             18130096 1241 -  59632846 I
e chlSab2.chr7             135575480 1186 + 135778131 I
e papAnu2.chr5             178641742 866 + 178775436 I
e macFas5.chr5             189222761 1153 + 189454096 I
e rheMac3.chr5             183829953 1229 + 184069350 I

a score=84111.000000
s hg38.chr4_KI270925v1_alt    455048 228 +    555799 CGGAATtggtgggttcttggtctcgctgacttcaagaatgaagctgcggacccgtggaccctggcggtggaccctcgcggtgagtgttacagttcctgaagatggtgtgtccggagtttgttccttcagatgttcagatgggtccagagtttcttcctgctggtgggttca-------------------------------------------------------------------------------------------------------tggtctggctgacttcaggagtgaagctgcagacctttgcggtgactgttacagctc
s panTro4.chr4             193167380 228 + 193495092 CGGAATtggtgggttcttggtctcgctgacttcaagaatgaagctgcggacccgtggaccctggcggtggaccctcgcggtgagtgttacagttcctgaagatggtgtatccggagtttgttccttcagatgttcagatgggtccagagtttcttcctgctggtgggttca-------------------------------------------------------------------------------------------------------tggtctggctgacttcaggagtgaagctgcagacctttgcggtgactgttacagctc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198240390 190 + 198332218 cggaattactgggttcttggtctccctgacttcaagaatgaagctgcagagccacggacct-----gcggaccctcgcggtgagtgtcacagttcttaaagacggtgtgtccg---------------------------------gagtttcttcctgctggtgggttca-------------------------------------------------------------------------------------------------------tggtctggctgacttcaggagcgaagctgcagaccttcgcggtgactgttacagctc
i ponAbe2.chr4             C 0 I 948
s nomLeu3.chr7b            113912449 317 + 115148730 TGgaattggtgggttcttggtctcgctgacttcaagaatgaagctgcggaacc-------------gcggaccctcgcggtgagtgt-acagttcttaaagatgctgtgtcgggagtttgttccttcggatgttcagatgtgtccggagtttcttcctgctggtgggttcatggactggctgacttcaggagtgaagctgcaaaccttcgcagtgactgttatagctcttaaaggcggcgtgtctggacttgtttgttccttccggtgggttcgtggtctcgctgacttcaagaatgaagctgcagacctttgcaggaagtgttacagctc
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87833896 3525 - 129401213 I
e canFam3.chr16             18130096 1241 -  59632846 I
e calJac3.chr3             190683454 2814 - 190850796 I
e chlSab2.chr7             135575480 1186 + 135778131 I
e papAnu2.chr5             178641742 866 + 178775436 I
e macFas5.chr5             189222761 1153 + 189454096 I
e rheMac3.chr5             183829953 1229 + 184069350 I

a score=45916.000000
s hg38.chr4_KI270925v1_alt    455276 407 +    555799 aaaaaggcagcatggacccaaagagtgagcagcaccaagatttactgcgaacagcggaagaacaaaacttccacagcctggaaagggaccagagcgggttgccactg--------------------------------gtggccccacccacatcctactgattggtccattttacagagagctgattggt------------------------ccattttatagagagctgattggtccattttacagagagctgattggcccattttgacaaagcgctgattggtgcttttacaaaactttagctagacgtaaaagttctccaagtccccaccagatgagctagacacagagtgctgatcagtgtgtttacaaacctctagctagacagagtgctgactggtgtgtttataaacctctagctagacac-agagtgttgattggtgcatttacaaagctct
s panTro4.chr4             193167608 383 + 193495092 aaaaaggcagcacggtcccaaagagtgagcagcaccaagatttactgcgaacagcgaaagaacaaaacttccacaacctggaaagggaccagagcggattgccactgctggccccggtatccggctttcgtttccttatctggccccacccacatcctactgattggtccattttacagagagctgattggtccattttacagagagctgattggcccattttatagagagctgattggtccattttacagagagctgattggcccattttgacaaagcgctgattggtgcttttacaaaactttagctagacacaaaagttctccaagtccccaccagatgagctagacac---------------------------------------------------------------------------------agagtgttgattggtccatttacaaacctct
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113912766 284 + 115148730 aaaaaggcggcacggaccccaagagtgagcagcagcaagatttattgctaatagcaaaagaacaaagcttccacagcccggaaggggacccaagcgggttgccactgctgactccggtgtccta-tttccttcccttatctggccccacccacatcctactgattggtccattttacagagagctgattggt------------------------------------------------ccattttacagagagctgattggtccgttttgacagag---------------------------------------------------------------------------------------------------------------------cgctgattggtgctttgacaaaaatttagctagacacaaaagt-------------tctccaagtccc-
i nomLeu3.chr7b            C 0 I 9
e mm10.chr8                 87833896 3525 - 129401213 I
e canFam3.chr16             18130096 1241 -  59632846 I
e calJac3.chr3             190683454 2814 - 190850796 I
e chlSab2.chr7             135575480 1186 + 135778131 I
e papAnu2.chr5             178641742 866 + 178775436 I
e macFas5.chr5             189222761 1153 + 189454096 I
e rheMac3.chr5             183829953 1229 + 184069350 I
e ponAbe2.chr4             198240580 948 + 198332218 I

a score=493219.000000
s hg38.chr4_KI270925v1_alt    455683 1072 +    555799  
s panTro4.chr4             193167991 1075 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198241528 1046 + 198332218  
i ponAbe2.chr4             I 948 C 0
s nomLeu3.chr7b            113913059 1034 + 115148730  
i nomLeu3.chr7b            I 9 C 0
e mm10.chr8                 87833896 3525 - 129401213 I
e canFam3.chr16             18130096 1241 -  59632846 I
e calJac3.chr3             190683454 2814 - 190850796 I
e chlSab2.chr7             135575480 1186 + 135778131 I
e papAnu2.chr5             178641742  866 + 178775436 I
e macFas5.chr5             189222761 1153 + 189454096 I
e rheMac3.chr5             183829953 1229 + 184069350 I

a score=2255.000000
s hg38.chr4_KI270925v1_alt    456755 2 +    555799 ac
s panTro4.chr4             193169066 2 + 193495092 ac
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198242574 2 + 198332218 Gc
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113914093 2 + 115148730 aC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189223914 2 + 189454096 ac
i macFas5.chr5             I 1153 I 10
s papAnu2.chr5             178642608 2 + 178775436 ac
i papAnu2.chr5             I 866 I 6
e mm10.chr8                 87833896 3525 - 129401213 I
e canFam3.chr16             18130096 1241 -  59632846 I
e calJac3.chr3             190683454 2814 - 190850796 I
e chlSab2.chr7             135575480 1186 + 135778131 I
e rheMac3.chr5             183829953 1229 + 184069350 I

a score=87106.000000
s hg38.chr4_KI270925v1_alt    456757  99 +    555799 ------acacacacacac----acacacacacac--acacacacacatacatacacacacacacagacacacacag--agacacatgcatactcaca-agacacacagagacaa
s panTro4.chr4             193169068  92 + 193495092 ------acacacacacac----agacacacacat--acatacacacacagacacacacagacacagagacac--------acacatgcatactcac--agacacacagagacaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198242576 106 + 198332218 ------acacacacacacacagagacacacacat--acatacacacacacatacacacacacacagacacacagagacacacatatgcatactcagacacatacacagagacaa
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113914095  89 + 115148730 ------Gcacacacacac----agagacacatac--atgcatacttacacagacacacacatacagacacac--------acgtatacacacc-----atacacacagacacac
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183831182  99 + 184069350 acacagacacacacacac----aaacatacacag--acacagacacacagagacacacaca-acacacacat--------acacacgtatacacacagacacacacatatacac
i rheMac3.chr5             I 1229 I 2
s macFas5.chr5             189223926  93 + 189454096 acacagacactcacacac----aaacatacacag--acacagacacacagagacacacaca-acacacacat--------acacacgtatac------acacacacatatacac
i macFas5.chr5             I 10 I 2
s papAnu2.chr5             178642616  89 + 178775436 acacatacacatacacac----acacacacacatgcacacacacacacacagacacacaca-acacacac----------acacacgtatac----------acacagacacag
i papAnu2.chr5             I 6 I 2
e mm10.chr8                 87833896 3525 - 129401213 I
e canFam3.chr16             18130096 1241 -  59632846 I
e calJac3.chr3             190683454 2814 - 190850796 I
e chlSab2.chr7             135575480 1186 + 135778131 I

a score=421784.000000
s hg38.chr4_KI270925v1_alt    456856 204 +    555799 acacacatacacacatacatacacacacacacacaAGCGCATGCGCATGCATGAACGCCTATATATTTTGTATTCAAACTGAAAACAAAACACAAACAGGTAATCCTGAAGTCAGCCAATGAAACACACATTTCTGTTGGGAGCCAGCTTTCCACAGCTCTCTCCTGTTCCCGAACATCTTACAAAGTGTGTCACTGATTGCTC
s panTro4.chr4             193169160 204 + 193495092 acacacatacacacatacatacgcacacacacacGAGCGCATGCGCATGCATGAACGCCTATATATTTTGTATTCAAACTGAAAACAAAACACAAATAGGAAATCCTAAAGTCAGCCAATGAAACACACATTTCtgttgggagccagctttccacagctctctcctgtttccgaacatcttacaaagtgtgtcactgattgcTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198242682 182 + 198332218 acacacatacacacatacata----------------------cgcaTGCATGAACGCCTGTATATTTTGTATTCAAACTGAAAACAAAACACAAATAGGAAATCCTGAAGTCAGCCAAGGAAACACACATTTCTGTTGGCAGCCAGCTTTCCACAGCTCGCTCCTGTTTCCGAACATCTCACAAAGTGTGTCACTGATTGCTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113914184 190 + 115148730 acacacatacacacacacacG--------------AGCGCATGCGCATGCATGAATGCCTATATATTTTGTATTCAAACTGAAAACAAAACACAAATAGGAAATCCTGAAGTCAGCCAATTAAACACACATTTCTGTTGCGAGCCAGCTTTCCACAGCTCTCTCATGTTTCTGAACATCTTACAAAGTGTGTCACTGATTGCTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183831283 200 + 184069350 acacatacacacagagacatatacacacacacacGAGCACATGTACATGCTTGAACAC--ATATATTTTGTATTCAAACTGAAAACAAAACACAGATAGGAAATCCTGAAGTCAGCCAATGAA--ACACATTGCTGTTGGGAGCCAGCTTTCCACAGCTTTCTCCTGTTTCTGAACATCTTATGAAGTGTGTCACTGATGGCTC
i rheMac3.chr5             I 2 C 0
s macFas5.chr5             189224021 200 + 189454096 acacatacacacagagacatatacacacacacacGAGCACATGTACATGCTTGAACAC--ATATATTTTGTATTCAAACTGAAAACAAAACACAGATAGGAAATCCTGAAGTCAGCCAATGAA--ACACATTGCTGTTGGGAGCCAGCTTTCCACAGCTTTCTCCTGTTTCTGAACATCTTATGAAGTGTGTCACTGATGGCTC
i macFas5.chr5             I 2 C 0
s papAnu2.chr5             178642707 200 + 178775436 acacacacacacagagacatatacacacacacacgagcacaTGTGCATGCTTGaacac--atatattttgtattcaaactgaaaacaaaacacagatagGAAATCCTGAAGTCAGCCAatgaa--acacatttctgttggcAGCCAGCTTTCCACAGCTTTCTCCTGTTTCTGAACATCTTATGAAGTGCGTCACTGATGGCTC
i papAnu2.chr5             I 2 C 0
s chlSab2.chr7             135576666 200 + 135778131 acacacacacacagagacatatacacacacacacGAGCACATGTGCATGCTTGAACAC--ATATATTTTGTATTCAAACTGAAAACAAAACACAGACAGGAAATCCTGAAGTCAGCCAATGAA--ACACATTTCTGTTGGGAGTCAGCTTTCCACAGCTTTCTCCTGTTTCTGAACATCTTATGAAGTGTGTCACTGATGGCTC
i chlSab2.chr7             I 1186 C 0
e mm10.chr8                 87833896 3525 - 129401213 I
e canFam3.chr16             18130096 1241 -  59632846 I
e calJac3.chr3             190683454 2814 - 190850796 I

a score=43816.000000
s hg38.chr4_KI270925v1_alt    457060 17 +    555799 GTTGTCATTTGTTTGTT---------
s panTro4.chr4             193169364 17 + 193495092 GTTGTCATTTGTTTGTT---------
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198242864 17 + 198332218 GTTGTCATTTGTTTGTT---------
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113914374 17 + 115148730 GTTGTCACTTGTTTGTT---------
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183831483 17 + 184069350 GTTGTCATTTGTTTGTT---------
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189224221 17 + 189454096 GTTGTCATTTGTTTGTT---------
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178642907 17 + 178775436 GTTGTCATTTGTTTGTT---------
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135576866 17 + 135778131 GTTGTCATTTGTTTGTT---------
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87837421 26 - 129401213 gtagttattttttttctgactctgga
i mm10.chr8                I 3525 C 0
e canFam3.chr16             18130096 1241 -  59632846 I
e calJac3.chr3             190683454 2814 - 190850796 I

a score=542307.000000
s hg38.chr4_KI270925v1_alt    457077 188 +    555799 gtctcctgtcttctaccagcttctatgaaactacagcaggctaaatttttagcttaaaagtagaataaaagttcagacgctttatagct-cttacaaattgtataacaaggagcacagaaaaattacagtagatctcacatcagaaatcacgcaatacagaatgcaatggggtgacatcttgaaagcgc
s panTro4.chr4             193169381 188 + 193495092 gtctcctgtcttctaccagcttctacgaaactacagcaggttaaatttttagcttaaaagtagaatgaaagttcagacgctttatagtt-CTTACAAATTGTATAACAaggagcacagaaaaattacagtagatctcacatcagaaatcacgcaatacagaatgcaatggggtgacatcttgaaagtgc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198242881 188 + 198332218 gtctcctgtcttctaccagcttctatgaaactacggcaggttaaatttttagcttaaaagtagaagaaaagttcagatactttatagtt-cttacaaactgtataacaaggagcacagaaaaattacagtagatctcacatcagaaatcatgcaatgcagaatgcaatggggtaacagcttgaaagtgc
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113914391 188 + 115148730 gtctcctgtcttctaccagcttctatgaaactatggcaagttaaatttttagcttaaaagtagaataaaagttcagacactttatagtt-cttacaaattgtataacaaggagcacagaaaaattacagtaaatctcacatcagaaatcatgcaatacagaatgcaatggagtgacatcttgaaagtgc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183831500 187 + 184069350 gtctcttgtcttctaccagcttctatgaaactacggcagg-taaatgtttagcttaaaagtaggataaaagctcagaccctttatagtt-cttacaaattgtataacaaggagcacagaaaaattacagtagatctcacgtcagaaatcacaccatacggaaggcaacggggtgatatcttgaaagtgc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189224238 187 + 189454096 gtctcttgtcttctaccagcttctatgaaactacggcagg-taaatgtttagcttaaaagtaggataaaagctcagaccctttatagtt-cttacaaattgtataacaaggagcacagaaaaattacagtagatctcatgtcagaaatcacaccatacggaaggcaacggggtgatatcttgaaagtgc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178642924 187 + 178775436 GTCTCTTGTCTTCTACCAGCTTCTATGAAACTACGGCAGG-TAAATTTTTAGCTTAAAAGTAGGATAAAAGCTCAGACCCTTTATAGTT-CTTACAAATTGTATAACAAGGAGCACAGAAAAATTACAGTAGATCTCACGTCAGAAATCACGCCATACAGAAGGCAACGGGGTGGTATCTtgaaagtgc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135576883 187 + 135778131 gtctcttgtcttctaccagcttctatgaaactacggcagg-taaatttttagcttaaaagtaggataaaagctcagaccctttatagtt-cttacaaattgtataacaaggagcacagaaaaattacagtagatctcacgtcagaaatcacgccatacggaaggcaacggggtgatatcttgaaagtgc
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87837447 171 - 129401213 gtcttttgtctgttgtcagtttttgtgaaactgtaacagactaaatttttggcttgtcaacatgataaaattacaggctcttaatatcc-ttCATTAAT--TATAAAAGGGGCCAAAGAAAGTTTGcagtagatttctcat--------------tacagaaaacag-aggctaatgtcttaaaatcgc
i mm10.chr8                C 0 C 0
s canFam3.chr16             18131337 172 -  59632846 gtcttgtatcatctgccagcttcgatgaacctgtagtgagctaaacttgtagcctgcaagtagagtaaaatcctggaccctttactgttccttac----------------agtatgaaaaaattatagtagacttctcatcagaaaacatgcaacacaaaatacaatggggtactg-cttaaaagtgc
i canFam3.chr16            I 1241 C 0
e calJac3.chr3             190683454 2814 - 190850796 I

a score=398210.000000
s hg38.chr4_KI270925v1_alt    457265 116 +    555799 tgaaag-aaaaaaa------aatatcaactcagtgttttattc--------cctgtgaga------------------------------aaatgaaggagaaataaagactttctcagacaaataaaaacggagagaaatcattgccaacagacctacat
s panTro4.chr4             193169569 116 + 193495092 tgaaag-aaaaaaa------aatatcaactcagtgttttcttc--------cctgtgaga------------------------------aaatgaaggagaaataaagactttctcagacaaataaaaacggagagaaatcattgccaacagacctacat
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198243069 117 + 198332218 tgaaagaaaaaaaa------aaaatcaactcagcgttttattc--------cctgcgaga------------------------------aaatgaaagagaaataaagactttctcagacaaataaaaacggagagaaatcattgccaacaggcctacat
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113914579 115 + 115148730 tgaaag-aaaaaaa------aa-atcaactcagtgttttattc--------cctgcgaga------------------------------aaatgaaggagaaataaaggctttctcagacaaataaaaatggagagaaatcattgccaacagacctacat
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183831687 114 + 184069350 tgaaag-aaaaaac------a--ctcaactcagtattttattc--------cctgagaga------------------------------aaatgaaggagaaataaagactttctcagacaaataaaaacggagagaaatcattgccaacagacctacat
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189224425 114 + 189454096 tgaaag-aaaaaac------a--ctcaactcagtattttattc--------cctgagaga------------------------------aaatgaaggagaaataaagactttctcagacaaataaaaacggagagaaatcattgccaacagacctacat
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178643111 114 + 178775436 tgaaag-aaaaaaa------a--ttcaactcgGTATTTTATTC--------CCTgagaga------------------------------aaatgaaggagaaataaagactttctcagacaaataaAAACGGAGAGAAATCATTGCCAACAGACCTAcat
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135577070 114 + 135778131 tgaaag-aaaaaaa------a--ctcaactcggtattttattc--------cctgagaga------------------------------aaatgaaggagaaataaagactttctcagacaaataaaaacggagagaaatcattgccaacagacctacat
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190686268 121 - 190850796 TGCAaa-aaaaaaaccccacaacatcaactcagtgttttattc--------cctgtgaaa------------------------------taa-gaaggagaaataaagactttcccagacaaataaaaacagagaaaaattatcagcaacagacctacat
i calJac3.chr3             I 2814 C 0
s mm10.chr8                 87837618 136 - 129401213 tgaagg-aaataaa------at-gtcaacccagtattctgctt--------cctgccaaattatatatgtccgaggtttataattcaaactgataaagtagaaataaagactttatcagacaaataacaactgaaagaattcattgccatc---------t
i mm10.chr8                C 0 C 0
s canFam3.chr16             18131509 119 -  59632846 tgaaag-aaaaaac------t--gtcaacccattgctctattctaaggatgtctttcaaa------------------------------aaattaaggagaaat--agactttctcagataagcaa-aactgaaaagactcattgccaacaaatctgcac
i canFam3.chr16            C 0 I 211

a score=6158339.000000
s hg38.chr4_KI270925v1_alt    457381 1829 +    555799  
s panTro4.chr4             193169685 1822 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198243186 1802 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113914694 1818 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183831801 1775 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189224539 1778 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178643225 1806 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135577184 1812 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190686389 1799 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87837754 1716 - 129401213  
i mm10.chr8                C 0 I 1
s canFam3.chr16             18131839 1854 -  59632846  
i canFam3.chr16            I 211 C 0

a score=-2385.000000
s hg38.chr4_KI270925v1_alt    459210 1 +    555799 -C
s panTro4.chr4             193171507 1 + 193495092 -C
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198244988 1 + 198332218 -C
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113916512 1 + 115148730 -C
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190688188 1 - 190850796 -C
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87839471 1 - 129401213 -G
i mm10.chr8                I 1 C 0
s canFam3.chr16             18133693 1 -  59632846 A-
i canFam3.chr16            C 0 C 0
e chlSab2.chr7             135578996 0 + 135778131 C
e papAnu2.chr5             178645031 0 + 178775436 C
e macFas5.chr5             189226317 0 + 189454096 C
e rheMac3.chr5             183833576 0 + 184069350 C

a score=8740.000000
s hg38.chr4_KI270925v1_alt    459211 7 +    555799 TGAGGCT
s panTro4.chr4             193171508 7 + 193495092 TGAAGCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198244989 7 + 198332218 TGAAGCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113916513 7 + 115148730 TGAAGCT
i nomLeu3.chr7b            C 0 T 8
s calJac3.chr3             190688189 7 - 190850796 TGAAGCT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87839472 7 - 129401213 TGAAGCC
i mm10.chr8                C 0 C 0
e canFam3.chr16             18133694 0 -  59632846 C
e chlSab2.chr7             135578996 0 + 135778131 C
e papAnu2.chr5             178645031 0 + 178775436 C
e macFas5.chr5             189226317 0 + 189454096 C
e rheMac3.chr5             183833576 0 + 184069350 C

a score=2666.000000
s hg38.chr4_KI270925v1_alt    459218 13 +    555799 -GGGCGTATTCCCG
s panTro4.chr4             193171515 13 + 193495092 -GGGCATATTCTTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198244996 13 + 198332218 -GGCCATATTCTTC
i ponAbe2.chr4             C 0 C 0
s calJac3.chr3             190688196 13 - 190850796 -GGGCACACTCTTG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87839479 13 - 129401213 AAGGGGTTTTCTG-
i mm10.chr8                C 0 I 4
e canFam3.chr16             18133694  0 -  59632846 C
e chlSab2.chr7             135578996  0 + 135778131 C
e papAnu2.chr5             178645031  0 + 178775436 C
e macFas5.chr5             189226317  0 + 189454096 C
e rheMac3.chr5             183833576  0 + 184069350 C
e nomLeu3.chr7b            113916520  8 + 115148730 T

a score=4312.000000
s hg38.chr4_KI270925v1_alt    459231 9 +    555799 CAGTGTTCC
s panTro4.chr4             193171528 9 + 193495092 CGGTGTTCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198245009 9 + 198332218 CGGTGTTCC
i ponAbe2.chr4             C 0 C 0
s calJac3.chr3             190688209 9 - 190850796 CAGTGTTTC
i calJac3.chr3             C 0 T 30
e mm10.chr8                 87839492 4 - 129401213 I
e canFam3.chr16             18133694 0 -  59632846 C
e chlSab2.chr7             135578996 0 + 135778131 C
e papAnu2.chr5             178645031 0 + 178775436 C
e macFas5.chr5             189226317 0 + 189454096 C
e rheMac3.chr5             183833576 0 + 184069350 C
e nomLeu3.chr7b            113916520 8 + 115148730 T

a score=11654.000000
s hg38.chr4_KI270925v1_alt    459240 64 +    555799 AGGCTGAGGCTGGGCGTGTTCCCGCGGTGTCCCGGGCTGAGGCCGGGCgtgttcttccggtgtt
s panTro4.chr4             193171537 53 + 193495092 AGGCTGAGGCTGGGCGTGTTCCCGCGGTGTTCCAGGCTGGGGCCGGGC-----------GTGTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198245018 64 + 198332218 AGACTGAAGCTGGGCGTATTCTTCCGGTGTTCCAGACTGAAGCTGGGCGTATTCTTCCGGTGTT
i ponAbe2.chr4             C 0 C 0
e mm10.chr8                 87839492  4 - 129401213 I
e canFam3.chr16             18133694  0 -  59632846 C
e calJac3.chr3             190688218 30 - 190850796 T
e chlSab2.chr7             135578996  0 + 135778131 C
e papAnu2.chr5             178645031  0 + 178775436 C
e macFas5.chr5             189226317  0 + 189454096 C
e rheMac3.chr5             183833576  0 + 184069350 C
e nomLeu3.chr7b            113916520  8 + 115148730 T

a score=25490.000000
s hg38.chr4_KI270925v1_alt    459304 308 +    555799 cttccggtgttcCGAGCTGAGGCCGGGCGTGTTCCCGCGGTGTCCCGGGCTGAGGCCGGGCGTGTTCCCGCGGTGTCCCGGGCTGAGGCCGGGCGTGTTCCCGCGGTGTCCCGGGCTGAGGCCGGGCGTGTTCTTCAGGTGTTCCGGGCTGAGGCCGGGCGTGTTCCCGCGGTGTCCCGGGCTGAGGCCGGGCGTGTTCCCGCGGTGTCCCGGGCTGAGGCCGGGCGTGTTCTTCCGGTGTTCCGGGCTGAGGCCGGGCGTGTTCCCGCGGTGTCCCGGGCTGAGGCCGGGCGTGTTCCCGCGGTGTC
s panTro4.chr4             193171590 308 + 193495092 CTTCCGGTGTTCCAGGCTGGGGCCGGGCGTGTTCTTCCGGTGTTCCAGGCTGAGGCCGGGCGTGTTCCCGCGGTGTCCCAGGCTGAGGCCGGGCATGTTCCCGCGGTGTTCCAGGCTGGGGCCGGGCGTGTTCTTTCAGTGTTCCAGGCTGAGGCCGGGCGTATTCCCGCGGCGTCCCAGGCTGAGGCCGGGCATGTTCCCGCGGCGTTCCAGGCTGAGGCCGGGCGTGTTCCCGCGGCGTTCCAGGCTGAGGCCGGGCGTGTTCCCGCGGCGTTCCAGGCTGAGGCCGGGCGTGTTCCCGCGGCGTT
i panTro4.chr4             C 0 C 0
e mm10.chr8                 87839492   4 - 129401213 I
e canFam3.chr16             18133694   0 -  59632846 C
e calJac3.chr3             190688218  30 - 190850796 T
e chlSab2.chr7             135578996   0 + 135778131 C
e papAnu2.chr5             178645031   0 + 178775436 C
e macFas5.chr5             189226317   0 + 189454096 C
e rheMac3.chr5             183833576   0 + 184069350 C
e nomLeu3.chr7b            113916520   8 + 115148730 T
e ponAbe2.chr4             198245082   0 + 198332218 C

a score=967.000000
s hg38.chr4_KI270925v1_alt    459612 5 +    555799 CCGGG
s panTro4.chr4             193171898 5 + 193495092 CCAGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198245082 5 + 198332218 CCAGA
i ponAbe2.chr4             C 0 C 0
e mm10.chr8                 87839492 4 - 129401213 I
e canFam3.chr16             18133694 0 -  59632846 C
e calJac3.chr3             190688218 30 - 190850796 T
e chlSab2.chr7             135578996 0 + 135778131 C
e papAnu2.chr5             178645031 0 + 178775436 C
e macFas5.chr5             189226317 0 + 189454096 C
e rheMac3.chr5             183833576 0 + 184069350 C
e nomLeu3.chr7b            113916520 8 + 115148730 T

a score=31066.000000
s hg38.chr4_KI270925v1_alt    459617 74 +    555799 CTGAGGCCGGGCGTGTTCTTCCGGTGTTCCGGGCTGAGGCCGGGCGTGTTCTTCCGGTGTTCCAGGCTGAGGCC
s panTro4.chr4             193171903 74 + 193495092 CTGAGGCCGGGCGTGTTCTTCCAGCGTTCCAGGCTGAGGCCGGGCGTATTCCTGCGGCGTCCCAGGCTGAGGCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198245087 74 + 198332218 CTGAAGCTGGGCGTATTCTTCCGGTGTTCCAGACTGAAGCTGGGCGTATTCTTCCGGTGTTCCAGACTGAAGCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113916512 73 + 115148730 CTGAAGCTGGGCCTACTCTTCCAGTGTTCCAAACCGAAGCTGGGCGTATTCTTCCGGTGTT-CAAACTGAAGCT
i nomLeu3.chr7b            T 8 T 65
e mm10.chr8                 87839492  4 - 129401213 I
e canFam3.chr16             18133694  0 -  59632846 C
e calJac3.chr3             190688218 30 - 190850796 T
e chlSab2.chr7             135578996  0 + 135778131 C
e papAnu2.chr5             178645031  0 + 178775436 C
e macFas5.chr5             189226317  0 + 189454096 C
e rheMac3.chr5             183833576  0 + 184069350 C

a score=8834.000000
s hg38.chr4_KI270925v1_alt    459691 19 +    555799 GGGCTTATTCTTCCGGTGT
s panTro4.chr4             193171977 19 + 193495092 GGGCGTGTTCTTCCGGTGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198245161 19 + 198332218 GGGCGTATTCTTCCGGTGT
i ponAbe2.chr4             C 0 T 99
s nomLeu3.chr7b            113916520 19 + 115148730 GGGCCTACTCTTCCAGTGT
i nomLeu3.chr7b            T 65 C 0
e mm10.chr8                 87839492  4 - 129401213 I
e canFam3.chr16             18133694  0 -  59632846 C
e calJac3.chr3             190688218 30 - 190850796 T
e chlSab2.chr7             135578996  0 + 135778131 C
e papAnu2.chr5             178645031  0 + 178775436 C
e macFas5.chr5             189226317  0 + 189454096 C
e rheMac3.chr5             183833576  0 + 184069350 C

a score=14552.000000
s hg38.chr4_KI270925v1_alt    459710 39 +    555799 CCCAGGCTGAGGCCGGGCGTATTCCCGCGGTGTTTCGGG
s panTro4.chr4             193171996 39 + 193495092 TCCAGGCTGAGGCCGGGCGTATTCCCGCGGTGTCCCAGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198245081 39 + 198332218 TCCAGACTGAAGCTGGGCGTATTCTTCCGGTGTTCCAGA
i ponAbe2.chr4             T 99 C 0
s nomLeu3.chr7b            113916539 38 + 115148730 TCCAAACCGAAGCTGGGCGTATTCTTCCGGTGTT-CAAA
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87839492  4 - 129401213 I
e canFam3.chr16             18133694  0 -  59632846 C
e calJac3.chr3             190688218 30 - 190850796 T
e chlSab2.chr7             135578996  0 + 135778131 C
e papAnu2.chr5             178645031  0 + 178775436 C
e macFas5.chr5             189226317  0 + 189454096 C
e rheMac3.chr5             183833576  0 + 184069350 C

a score=3600.000000
s hg38.chr4_KI270925v1_alt    459749 1 +    555799 C
s panTro4.chr4             193172035 1 + 193495092 C
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198245120 1 + 198332218 C
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113916577 1 + 115148730 C
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183833576 1 + 184069350 C
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189226317 1 + 189454096 C
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178645031 1 + 178775436 C
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135578996 1 + 135778131 C
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190688188 1 - 190850796 C
i calJac3.chr3             T 30 C 0
e mm10.chr8                 87839492 4 - 129401213 I
e canFam3.chr16             18133694 0 -  59632846 C

a score=57918.000000
s hg38.chr4_KI270925v1_alt    459750 17 +    555799 TGAGGCTGGGCGTATTC
s panTro4.chr4             193172036 17 + 193495092 TGAGGCCGGGCGTATTC
i panTro4.chr4             C 0 I 1000
s ponAbe2.chr4             198245121 17 + 198332218 TGAAGCTGGGCGTATTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113916578 17 + 115148730 TGAAGCTGGGCGTATTC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183833577 17 + 184069350 TGAAGCTGGGCATATTC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189226318 17 + 189454096 TGAAGCTGGGCATATTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178645032 17 + 178775436 TGAAGCTGGGCATATTc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135578997 17 + 135778131 TGAAGCTGGGCATATTC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190688189 17 - 190850796 TGAAGCTGGGCACACTC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18133694 17 -  59632846 TGAAGAAATGCATATTC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87839492  4 - 129401213 I

a score=32375.000000
s hg38.chr4_KI270925v1_alt    459767 10 +    555799 TTCCGGTGTT
s panTro4.chr4             193173053 10 + 193495092 TTCTGGTGTT
i panTro4.chr4             I 1000 C 0
s ponAbe2.chr4             198245138 10 + 198332218 TTCCGGTGTT
i ponAbe2.chr4             C 0 I 231
s nomLeu3.chr7b            113916595 10 + 115148730 TTCCGGTGTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183833594 10 + 184069350 TTCCAGTGTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189226335 10 + 189454096 TTCCAGTGTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178645049 10 + 178775436 ttccagtgtt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135579014 10 + 135778131 TTCCAGTGTT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190688206 10 - 190850796 TTGCAGTGTT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18133711 10 -  59632846 TTCTGGTATA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87839492  4 - 129401213 I

a score=17443.000000
s hg38.chr4_KI270925v1_alt    459777 6 +    555799 TCTCAC
s panTro4.chr4             193173063 6 + 193495092 TCTCAC
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113916605 6 + 115148730 TCTCAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183833604 6 + 184069350 TCTCAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189226345 6 + 189454096 TCTCAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178645059 6 + 178775436 tctcaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135579024 6 + 135778131 TCTCAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190688216 6 - 190850796 TCTCAA
i calJac3.chr3             C 0 I 574
s canFam3.chr16             18133721 6 -  59632846 TCTCAA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87839492 4 - 129401213 I
e ponAbe2.chr4             198245148 231 + 198332218 I

a score=3276.000000
s hg38.chr4_KI270925v1_alt    459783 1 +    555799 A
s panTro4.chr4             193173069 1 + 193495092 A
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113916611 1 + 115148730 A
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183833610 1 + 184069350 A
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189226351 1 + 189454096 A
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178645065 1 + 178775436 a
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135579030 1 + 135778131 A
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190688796 1 - 190850796 A
i calJac3.chr3             I 574 C 0
s canFam3.chr16             18133727 1 -  59632846 A
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87839492 4 - 129401213 I
e ponAbe2.chr4             198245148 231 + 198332218 I

a score=469523.000000
s hg38.chr4_KI270925v1_alt    459784 192 +    555799 TTCTTGTTTGGGAAACTATAACGCGCTGCTCAAAGATCATCTTAA-TTCTGAAATACCC--AAAATCAAAACGCAAGAT-AGTGAAG------GCTATAAAACTCTCACCGTATAAAGATTAACTGATGTA--ATAGAGG---------------------------CTTTCCATTTATCTATTCA--AAACAGATTACTTGCACATCTGTTAGATGCCAGGTCATGGACTCA
s panTro4.chr4             193173070 192 + 193495092 TTCTTGTTTGGGAAACTATAACGCGCTGCTCAAAGATCATCTTAA-TTCTGAAATACCC--AAAATCAAAACGCAAGAT-AGTGAAG------GCTATAAAACTCTCACCGTATAAAGATTAACTGATGCA--AAAGAGG---------------------------CTTTCCATTTATCTATTCA--AAACACATTACTTGCACATCTGTTAGACGCCAGGTCATGGACTCA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113916612 192 + 115148730 TTCTTGTTTGGGAAACTATAACGCGCTGCTCAAAGATCATCTTAA-TTCTGAAATACCC--AAAATCAAAACGCAAGAC-AGTGACG------GCTATAAAACTCTCGCCTTATAAAGATCAACTGATGCA--AAAGAGG---------------------------CTGTCCATTTATCTATTCA--AAACACATTACTTGCACATCTGTTAGACGCCAGGTCATGGACTCA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183833611 185 + 184069350 TTATTGTTTGGGAAACTATAACACACTGCTCAAAGATCATCTT--------TGATGTCC--AAAATCAAAACGCAAGAC-AGTGAGG------CCTATAAAACTCTCACTGTATAAAGATTAACTGATGCA--AGAGAGG---------------------------TTGCCTATTTATTAATTCA--AAACACATTACTCGCATGTCTGTTAGACGCCAGGTCATGGGCTCA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189226352 185 + 189454096 TTATTGTTTGGGAAACTATAACACACTGCTCAAAGATCATCTT--------TGATGTCC--AAAATCAAAACGCAAGAC-AGTGAAG------CCTATAAAACTCTCACTGTATAAAGATTAACTGATGCA--AGAGAGG---------------------------TTGCCTATTTATTAATTCA--AAACACATTACTCGCATGTCTGTTAGACGCCAGGTCATGGGCTCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178645066 185 + 178775436 ttattGTTTGGCAAACTATAACACACTGCTCAAAGATCATCTT--------TGATGTCC--AAAATCAAAATGCAAGAC-AGTGAGG------CCTATAAAACTCTCACTGTATAAAGATTAACTGATGCA--AGAGAgg---------------------------ttgcctatttatttattca--aaacacATTACTCGCATGTCTGTTAGACGCCAGGTCATGGGCTCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135579031 188 + 135778131 TTATTGTTTGGGAAACTATAACACACTGCTCAAGGATCATCTTAA-TTCTGAAATACCC--AAAATCAAAACGCAAGAC-AGTGAGG------CCTATAAAACTCTCACTGTATAAAGATTAACTGATGCA--AGAGAGG---------------------------TTGCCTATTT----ATTCA--AAACACATTACTCGCATGTCTGTTAGATGCCAGGTCATGGGCTCA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190688797 194 - 190850796 TTCTTGTTTGGGAAACTATAACGCACTGTGCAAAGATTACTTAAA-CTCTGAAATATGC--AAAATCAAAAAGCAAGAC-AGTGAGA------GTCATAAAACTCTCACCTTATATGGATTAACTTATGCAAGAGAGAGG---------------------------TTGTCCattgatttgttca--aaaaacattccttgcacatctgttagatgccaggtcatgcactCA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87839496 225 - 129401213 TTCCTGTTCTGGGAACTATTCTATACCACCAAAAGATGATCTTAATTTTTGAAAAACCCTAAAAATCAAAAAGTGGATCTAATTATA------ATAATATAAAGCTCAGCTATTAGAGATTAAATGATATG--AGAAAAGtatttatttatttatttatttatttatttatttatttatttatttattAAAAACATTCATTATACATCTGTCATATGTCTGACCCTGAACAGT
i mm10.chr8                I 4 C 0
s canFam3.chr16             18133728 198 -  59632846 TTCTTGTTTGGGAAAATACAACGCACTACTCAAC-ATCATTGTAA-TGCCGAGATACCC--AACATTAAAAAGAAGGAC-AGGCATATATAACACTATAAAACATACATTTCAAAAAGATTAAGTGATGTA--AGAGAAG--------------------------TTTTTTCatttatttgttca--aaaaacatttattgcacatttattttatgccaggctttgaactga
i canFam3.chr16            C 0 C 0
e ponAbe2.chr4             198245148 231 + 198332218 I

a score=152565.000000
s hg38.chr4_KI270925v1_alt    459976 48 +    555799 CCTACCTCATTTATGCAGTGCATGGTATCTTGAGATACTAATACTTTG
s panTro4.chr4             193173262 48 + 193495092 CCTACCTCATTTATGCAGTGCATGGTATCTTGAGATACTAATACTTTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198245379 47 + 198332218 CCTACCTCATTTATGCAGTGCATGGTATC-TGAGATATTAATACTTTG
i ponAbe2.chr4             I 231 M 608
s nomLeu3.chr7b            113916804 48 + 115148730 CCTACCTCATTTATGCAGTGCATGGTATCTTGAGATACTAATACTTTG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183833796 47 + 184069350 CCTACCTCA-TTATGCAGTGCATGGTATCTCGAGATGCCAATACTTTG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189226537 47 + 189454096 CCTACCTCA-TTATGCAGTGCATGGTATCTCGAGATGCCAATACTTTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178645251 47 + 178775436 CCTACCTCA-TTATGCAGTGCATGGTATCTCGAGATGCCAATACTTTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135579219 47 + 135778131 CCTACCTCA-TTATGCAGTGCATGGTATCTCGAGATGCCAATACTTTG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190688991 47 - 190850796 CCCACCTTATTCATGCAATGCATAATATC-TGAGCTACCAACACTTTG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87839721 47 - 129401213 CAGGCCTAACTCATGCAATGGGTGATGTTCTGAGATACCGTTTTCTC-
i mm10.chr8                C 0 C 0
s canFam3.chr16             18133926 44 -  59632846 ----cctaatttacacaagggataATATTTTGAGATATCAATACTTTG
i canFam3.chr16            C 0 C 0

a score=114935.000000
s hg38.chr4_KI270925v1_alt    460024 35 +    555799 TCCTCCCTGGATTTTTTCTTCTCCCcagtgtagca
s panTro4.chr4             193173310 35 + 193495092 TCCTCCCTGGATTTTTTCTTCTCCCcagtgtagca
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113916852 35 + 115148730 TCCTCCCTGGATTTTTTCTTCTCCCcagtgtagca
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183833843 35 + 184069350 TCCTCCCTGAATGTTTTCTTCTCCCcagtgtagca
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189226584 35 + 189454096 TCCTCCCTGAATGTTTTCTTCTCCCcagtgtagca
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178645298 35 + 178775436 TCCTCCCTGAATGTTTTCTTCTCCCCAGTGTAGCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135579266 35 + 135778131 TCCTCCCTGAAGGTTTTCTTCTCCCcagtgtagca
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190689038 35 - 190850796 TCCTCCCTGAATTTTTTCTTCTCCCcagcatagcg
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87839768 35 - 129401213 CCCTACCTGTACCTTTCCCCTTTCCTAGTGTAGCA
i mm10.chr8                C 0 I 803
s canFam3.chr16             18133970 35 -  59632846 TCCTCCTTGCATTTTTCCCTTTTCCcaatataaca
i canFam3.chr16            C 0 C 0
e ponAbe2.chr4             198245426 608 + 198332218 M

a score=569296.000000
s hg38.chr4_KI270925v1_alt    460059 244 +    555799 gagt-----------ggggcatgggctatggagtcagcccgctatggcatgttctaccactataccctctccagctatttcacctgaatgttacttaatctcttcctgcttgaatttcctcatctataaaatgaaaatcatatcagtgagcattaaagacttaagacatagaaagcatttagaaaagtg------ACATCACAG-A-CCTCAGTGCGACTCATTATGATTTGCTATTATTATTCTCTTCTTAGCCCTGATTCA
s panTro4.chr4             193173345 245 + 193495092 gagt-----------ggggcatgggctatggagtcagcccgctatggcgtgttctaccgctataccctctccagctatttcacctgaacgttacttaatctcttcctgcttgaatttcctcatctataaaatgaaaatcgtatcagtgagcattaaagacttaagacatagaaagcatttagaaaagtgtctg--acatcacag-A-CCTCAGTGCGACTCATTATGATTTGCTATTATTATTCTCTT---AGCCCTGATGCA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113916887 246 + 115148730 gagt-----------ggggcatgggctatagagtcagcccgctatggtgtgttctaccactataccctctccagctatttcacctgaacgttacttaatctcttcctgcttgaatttcctcatctataaaatg-aaatcatatcagtgaggattaaagactttagacat-ttaagcatttagaatagtgtcta--acatcacag-A-GCTCAGTTCGACTCATTGTGATTTGCTGTTATTATTCTCTTCTTAGCCCTGATTCA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183833878 247 + 184069350 gagt-----------ggagcatggg-tgtggagtcagccctctatggcatgttctaatactgtaccctctccagctacttcacctgaacattacttcatctcttcctgcttcaatttcctcatctataaaataaaaatcatatcagtgagggttaaagacttaagacatataaagcatttagaaaagtgtctgtaacatcacag-a-gctcagtGCTACTCATTATGATTTGCTATTATTATTATTCTC--AGCCCTGATTCA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189226619 247 + 189454096 gagt-----------ggagcatggg-tgtggagtcagccctctacggcatgttctaatactgtaccctctccagctacttcacctgaacattacttcatctcttcctgcttcaatttcctcatctataaaataaaaatcatatcagtgagggttaaagacttaagacatataaagcatttagaaaagtgtctgtaacatcacag-a-gctcagtGCTACTCATTATGATTTGCTATTATTATTATTCTC--AGCCCTGATTCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178645333 245 + 178775436 GAGT-----------GGAGCATGGG-TGTGGAGTCAGCCCTCTATGGCATGTTCTAATACTATACCCTCTCCAGCTACTTCACCTGAACATTACTTCATCTCTTcctgcttcaatttcctcatctataaaatgaaaatcatatcaGTGAGGGTTAAAGACTTAAGacatataaagcatttag--aagTGTCTGTAACATCACAG-A-GCTCAGTGCTACTCATTAtgatttgctattattattattctc--agcCCTGATTCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135579301 247 + 135778131 gagt-----------ggagcatggg-cgtggagtcagccctctacggcatgttctaatactgtaccctctccagctacttcacctgaacattacttcatctcttcctgcttcaatttcctcatctaaaaaatgaaaatcatatcagtgagggttaaagacttaagacatataaagcatttagaaaagtgtctgtaacatCACGG-A-GCTCAGTGCTACTCATTATGATTTGCTATTATTATTATTCTC--AGCCCTGATTCA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190689073 251 - 190850796 gagt-----------ggggcatggtgtatggagtcaggttgctgtgctgtgttacaccacgataccctctccagctatttcacctgaacgttacttcatctcttcctgcttgaattttctcatctataaaatgagaatcatgtcagtgaggtttaaagacttaagacatacaaagcatttagaaaagtgtctgtaagatcacag-aggctcagtGCTACTCATTATGATTTGCCATTATTATTCTCTTTTTACCCCTGATTCT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18134005 243 -  59632846 gagtacgtatcctgcagagtgtggc-taccgagtcaaactatcatgcttcattccatagctgtccccctaccagctatgtgactttaaca--agctaatctttgc--gtttaaattccctcatctatacaatgaag-----------gatgatgaaagagtcaatatatgtaaagtatttagaacggtgtttgtaagacaatagta-gctcagtactacccattattattTGCTATTTTTATTTCCTT---ATCCCAAATTCA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87839803 803 - 129401213 I
e ponAbe2.chr4             198245426 608 + 198332218 M

a score=1008876.000000
s hg38.chr4_KI270925v1_alt    460303 337 +    555799 AACTGATAGCACTTTCTTGTCTTGGAGAAAGTGTATGACAGAGGAGAAAGCGGAAGTGTTTAGGAAAGTCACTCTGAGG---TAAGGGGATCA-------TGCACACCAGTGGAAGGCTCTGAGAACATAGCTTGCCAGTGGCTCTGAACCCTCCCAGAAGCCGCCTCCTGCCACAGCCCTGTCCTTGACCAGGAAGGGAACTCTTGCTAAATACCTCATAGGC-------------CCTGGGTTTCCTCAGCCTGCTCTCAG-GGGTCTTCCCTCAAAAGCACAGCTTGTTATTCATGCTATCTCTTCCCCAGGCAACCAGAACCAGGGCCCTGTCCTGCTCTCCCTTGGATCAGGCCCC
s panTro4.chr4             193173590 337 + 193495092 AACTGATAGCTCTTTCTTGTCTTGGAGGAAGTGTATGACAGAGGAGAAAGTGGAAGTGTTTAGGAAAGTCACTCTGAGG---TAAGGGGATCA-------TGCACACCAGTGGAAGGCTCTGAGAACATAGCTTGCCAGTGGCTCTGAACCCTCCCAGAAGCCGCCTCCTGCCACAGCCCTGTCCTTGACCAGGAAGGGAACTCTTGCTAAACACCTTATAGGC-------------CCTGGGTTTCCTCAGCCTGCTCTCAG-GGGTCTTCCCTCAAAGGCACAGCTTGTTATTCATGCTATCTCTTCCCCAGGCAACCAGAACCAGGGCCCTGTCCTGCTCACCCTTGGATCAGGCCCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198246054 337 + 198332218 AACTGATAGCACTTTCTTGTCTTGGAGGAAGTGTATGACAGAGGAGAAAGTGGAATGTTTTAGGAAAGTCACTCTGAGG---TAAGGGGATCA-------TGCCCACCAGTGAAAGGCTCTGAGAACATAGCTTGCCAGTGGCTCTGAACCCTCCCAGGAGCTGCCTCCTGCCACAGCCCTGTCCTTGACCAGGAAAGGAACTCTTGCTAAATACCTCATAGGC-------------CCTGGGTTTCCTCAGCCTGCTCTCAG-GGGTGTTCCCCCAAAGGCACAGCTTGTTATTCATGCTATCTCTTCCCCAGGCAACCAGAACCGGGGCCCTGTCCTGCTCTCCCTTGGATCAGGCCCC
i ponAbe2.chr4             M 608 C 0
s nomLeu3.chr7b            113917133 336 + 115148730 -ACTGATAACACTTTCTTGTCTTGGAGGAAGTGTATGACAGAGGAGAAAGTGGAAGTGTTTAGGAAAGTCACTCTGAGG---TAAGGGGATCA-------TGCACACCAGTGGAAGGCTCTGAGAACGTAGCTTGCCAGTGGCTCTGAACCCTCCCAGAAGCCGCCTCCTGCCACAGCCCTGTCCTTGACCAGGAAGGGAACTCTTGCTAAATACCTCATAGGC-------------CCTGGGTTTCCTCAGCCTGCTCTCGG-GGGTCTTTCCTCAAAGGCACAGCTTGTTATTCATGCTATCTCTTCCCCAGGCAACCAGAACCAGGGCCCTGTCCTGCTCTCCGGTGGATCAGGCCCT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183834125 317 + 184069350 AACTCATAGCTCTTTCTTGTCTTGGGGGAAGTGTATGACAGAGGAGAAAGTGGAAGTGTTTAGTAA----------AGG---TAAGGGGATCG-------TGCACACCAGTGGAAGGCTCTGAGAACACAGCTTGCCAGTGGCTCTAAACCCTC---GAAGCCGCCTCCTGCCACAGCCCTGTCCTTGACCGGGAAGGGAACTCTTGCTAAATACTTCATAGGC-------------CCTGGGTTTCCTCAACCTGCCCTCAG-GGGTCTTCCCTCAGTGGCACAGCTTGTTATTCACACTGTCTCTTCCCCAGGCAACCAGAACCAGGGCTCGGTCCTGCTTTTCCTTGGATC-------
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189226866 317 + 189454096 AACTCATAGCTCTTTCTTGTCTTGGGGGAAGTGTATGACAGAGGAGAAAGTGGAAGTGTTTAGTAA----------AGG---TAAGGGGATCG-------TGCACACCAGTGGAAGGCTCTGAGAACACAGCTTGCCAGTGGCTCTAAACCCTC---GAAGCCGCCTCCTGCCACAGCCCTGTCCTTGACCGGGAAGGGAACTCTTGCTAAATACTTCATAGGC-------------CCTGGGTTTCCTCAACCTGCCCTCAG-GGGTCTTCCCTCAGTGGCACAGCTTGTTATTCACACTGTCTCTTCCCCAGGCAACCAGAACCAGGGCTCGGTCCTGCTTTTCCTTGGATC-------
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178645578 320 + 178775436 AACTCATAGCTCTTTCTTGTCTTGGGGGAAGTGTATGACAGAGGAGAAAGTGGAAGTGTTTAGTAA----------AGG---TAAGGGGATCG-------TGCACACCAGTGGAAAGCTCTGAGAACACAGCTTGCCAGTGGCTCTAAACCCTCCCAGAAGCCGCCTCCTGCCACAGCCCTGTCCTTGACGGGGAAGGGAACTCTTGCTAAATACTTCATAGGC-------------CCTGGGTTTCCTCAACCTGCCCTCAG-GGGTCTTCCCTCAGTGGCACAGCTTGTTATTCACACTGTCTCTTCCCCAGGCAACCAGAACCAGGGCTCGGTCCTGCTTTTCCTTGGATC-------
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135579548 305 + 135778131 AACTCATAGCTCTTTCTTGTCTTGGGGGAAGTGTATGACAGAGGAGAAAGTGGAAGTGTTTAGTAA----------AGG---TAAGGGGATCG-------TGCACACCAGTGGAAGGCTCTGAGAACATAGCTTGCCAGTGGCTCTAAACCCTCCCAGAAGCCGCCTACTGCCACAGCCCTGTCCTTGACCGGGAAGGGAACTCTTGCTAAATACCTCATAGGC-------------CCTGGGTTTCCTCAACCTGCCCTCAG----------------GGCACAGCTTGTTATTCACACTGTCTCTTCCCCAGGCAACCAGAACCAGGGCTCCGTCCTGCTTTTCCTTGCATC-------
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190689324 328 - 190850796 AACTGATAG--CTTCCTTGTCTCATGGGAAGTGTATGACAGAGAAGAAAGTGGACATGTTTAGAAAAGTCACTCTGAGG---TACGGGAATCA-------CACACACCAGTGGAAGGCTCTGAGAACGTAGCTTGCCAGTGGATCTGAATCCTCCCAGAAGCCACTTCCTGCCACAGCCCTGTCCTTGACC-GGACAGCAACTCTTGCTCAATACCTCATAGGC-------------CCTGGGTTTACTCAACCTGCTCGCAG-GGGTCTTCCCTCAATGGCACAGCTTGTCATTCGTG------CCTCCCCAGGCAACCAGAACCAGAACCATGTCCTGCTCTTCCTCAGATCCGGCCCC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18134248 352 -  59632846 AACTGGTAGCTATTCCTTGTCTCA---GAAGTATATGGCAGAGAAT--GGTGTAAATGTCCCCAAAAATCACTCTGAGGGCCTAAAGGAATCAATATCTTAGCATACTGTGAGGAGGCTCTGAGTGCTTAGCTTGCCGCTGGTCTGAACCCCTCCCTGGAGGAGCTTCGTCACATAGTTCCATTCCTGATTAGTACAACAGCC----CTACATTCCTCTAGGGCAGCAGAGCTTGCTCCTGATTTTTGTCAATCTGCTCTCAGAAAACCTTCCCTCAGGGGCACAGCTTGTCATTCACGCTATCTCCTCTCTGGGCAACCGGAACCAGGCCTATGTCCTGCTGCTCCCTGGATCAAGTCCC
i canFam3.chr16            C 0 I 404
e mm10.chr8                 87839803 803 - 129401213 I

a score=288675.000000
s hg38.chr4_KI270925v1_alt    460640 99 +    555799 CTAGGCCACCAGGTGCTTGACTCAGCCTTAGACAGCCTCAGCTAGTTCTGGTGCAGAGCAGGTCTTTGACCTGTTCCATAAAGTCCACCGCTTTGCATA
s panTro4.chr4             193173927 99 + 193495092 CTAGGCCACCAGGTGCTTGACTCAGCCTTAGACAGCCTCAGCTAGTTCTGGTGCAGAGCAGGTCTTTGACCTGTTCCATAAAGTCCACAGCTTTGCATA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198246391 99 + 198332218 CTAGGCCACCAGGTGCTTGACTCAGCCTTAGACAGCCTCAGCTAGTTCTGGCGCAGAGCAGGTCTTTGACCTGTTCCATAAAGTCCACAGATTTGCATA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113917469 99 + 115148730 CTAGGCCACTAGGTGCCTGACTCAGCCTCAGACAGCCTCAGCTAGTTCTGGTGCAGAGCAGGTCTTTGACCTGTTCCATAAAGTCCACAGCTTTGCATA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183834442 92 + 184069350 --AGGCCACCAGGTGCTTGACTCAGCCTTAGACAGCCTCAGCTGTTTCTTGTG-----CAGGTCTTTGACCTGTCCCATAAAGTCCACATCTTTGCATA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189227183 92 + 189454096 --AGGCCACCAGGTGCTTGACTCAGCCTTAGACAGCCTCAGCTGTTTCTTGTG-----CAGGTCTTTGACCTGTCCCATAAAGTCCACATCTTTGCATA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178645898 97 + 178775436 --AGGCCACCAGGTGCTTGACTCAGCCTTAGACAGCCTCAGCTAGTTCTCGTGCAGAACAGGTCTTTGACCTGTCCCATAAAGTCCACATTTTTGCATA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135579853 97 + 135778131 --AGGCCACCAGGTGCTTGACTCAGCCTTAGACAGCCTCAGCTAGTTCTGGTGCAGAGCAGGTCTTTGACCTATCCCATAAAGTCCACATCTTTGCATA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190689652 99 - 190850796 CTAGGCCACCAGGTGCTTGACTCAGCCCTAGGCAGCCTCAGCTAGTTCTGGTGCAGAGCAGGTCTATGACCTGTTCCATTAAGTCCACAGCTTTGCATA
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87839803 803 - 129401213 I
e canFam3.chr16             18134600 404 -  59632846 I

a score=1936668.000000
s hg38.chr4_KI270925v1_alt    460739 676 +    555799  
s panTro4.chr4             193174026 666 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198246490 676 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113917568 676 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183834534 609 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189227275 610 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178645995 610 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135579950 607 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190689751 606 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18135004 695 -  59632846  
i canFam3.chr16            I 404 C 0
e mm10.chr8                 87839803 803 - 129401213 I

a score=3317.000000
s hg38.chr4_KI270925v1_alt    461415 16 +    555799 CTATCCATgggatgcc
s panTro4.chr4             193174692  1 + 193495092 ---------------c
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198247166 16 + 198332218 CTATCCATGGGATGCC
i ponAbe2.chr4             C 0 M 483
s nomLeu3.chr7b            113918244 16 + 115148730 CTACCCATGGGATGCC
i nomLeu3.chr7b            C 0 I 26
e mm10.chr8                 87839803 803 - 129401213 I
e canFam3.chr16             18135699  0 -  59632846 C
e calJac3.chr3             190690357  0 - 190850796 C
e chlSab2.chr7             135580557  0 + 135778131 C
e papAnu2.chr5             178646605  0 + 178775436 C
e macFas5.chr5             189227885  0 + 189454096 C
e rheMac3.chr5             183835143  0 + 184069350 C

a score=334728.000000
s hg38.chr4_KI270925v1_alt    461431 167 +    555799 cagccttttagccttcttaggccacattggaagaaaaataattatcttgggccacacataaaatataccaacactagtgatagcagata---agctaaaagaaaaagaaatcacacacaa-agaaatctcataatgttttaagaaactttaccaatttgtattggactgca
s panTro4.chr4             193174693 167 + 193495092 cagccttttagccttcttaggccacactggaagaaaaataattatcttgggccacacataaaatataccaacactagtgatagcagata---agctaaaagaaaaagaaatcacacacac-aaaaatctcataatgttttaagaaactttaccaatttgtattggacggca
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113918286 168 + 115148730 cagccttttagccttcttaggccacattggaagaaaaagaattatcttgggccacacataaaatatactaacactagtgatagcagata---agctaaaagaaaaagaaatcacacacacaaaaaatctcataatgttttaagaaactttaccaatttgtattggactgca
i nomLeu3.chr7b            I 26 C 0
s rheMac3.chr5             183835143 167 + 184069350 cagccttttggccttcttaggctacattggaaggaggaggattgtcttgggccacacataaaatgtgctaacactaatgatagcagata---agctaaaagaaaaagaaatcacacacag-aaaaagctcataagattttaataaagtttatgaatttgtgttgggccaca
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189227885 167 + 189454096 cagccttttggccttcttaggctacattggaaggaggaggattgtcttgggccacacataaaatgtgctaacactaatgatagcagata---agctaaaagaaaaagaaatcacacacag-aaaaagctcataagattttaataaagtttatgaatttgtgttgggccaca
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178646605 167 + 178775436 CAGCCTTTTGGCCTTCTTAGGCTACATTGGAAGAAGGAGGAttgtcttgggtcacacataaaatatactaacactaatgatagcagata---agctaaaagaaaaagaaatcacacacag-aaaaatctcataagattttaagaaagtttatgaatttgtattgGGCCACA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135580557 167 + 135778131 cagccttttggccttcttaggctacattagaagaagaaggattgtcgtgggccacacataaaatatactaacactaatgatagcagata---agctaaaagaaaaagaaatcacacacag-aaaaatctcataaggttttaagaaagtttatgaatttgtgttgggccaca
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190690357 138 - 190850796 CAACCTTTTGGCCTTCTTG---------------------------ttgggccacacataaaatatactaacactagtgatagctgatatctaaaagaaagaaaaaaaaatcaca------aaaaatctcataatggtctaagaaagtttacgaatttgtgttgggccaca
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87839803 803 - 129401213 I
e canFam3.chr16             18135699   0 -  59632846 C
e ponAbe2.chr4             198247182 483 + 198332218 M

a score=1053805.000000
s hg38.chr4_KI270925v1_alt    461598 461 +    555799  
s panTro4.chr4             193174860 461 + 193495092  
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113918454 463 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183835310 530 + 184069350  
i rheMac3.chr5             C 0 I 202
s macFas5.chr5             189228052 457 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178646772 456 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135580724 459 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190690495 469 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18135699 356 -  59632846  
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87839803 803 - 129401213 I
e ponAbe2.chr4             198247182 483 + 198332218 M

a score=130259.000000
s hg38.chr4_KI270925v1_alt    462059 60 +    555799 GAGCAGATGGGGACAGAATGAGGTGA-----CCCCCAGCACAGTGGCAGAGCCTGGGT--GGGAAAG
s panTro4.chr4             193175321 60 + 193495092 GAGCAGATGGGGACAGAGTGAGGTGG-----CCCCCAGCACAGTGGCAGAGCCTGGGT--GGGAAAG
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113918917 60 + 115148730 GAGCAGACGGGGACAGAGTGAGGTGG-----CCCCCAGCACAGTGGCAGAGCCAGGGT--GGGAAAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183836042 58 + 184069350 GAGCAGATGGGGACAGAGTGAGGTGG------CCCCAGCGCAGT-GCAGAGCCTGGGT--GGGAAAG
i rheMac3.chr5             I 202 C 0
s macFas5.chr5             189228509 58 + 189454096 GAGCAGATGGGGACAGAGTGAGGTGG------CCCCAGCGCAGT-GCAGAGCCTGGGT--GGGAAAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178647228 58 + 178775436 GAGCAGACAGGGACAGAGTGAGGTGG------CCCCAGCGCAGT-GCAGAGCCTGGGT--GGGAAAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135581183 58 + 135778131 GAGCAGACGGGGACAGAGTGAGGTGA------CCCCAGCACAGT-GCAGAGCCTGGGT--GGGAAAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190690964 60 - 190850796 GAGTGAGCAGGGACAGAATGAGATGG-----CCCCCAGCACAGTGCCAGAGCCTGGGT--GGGAAAG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18136055 65 -  59632846 GAGAGGA-GGGGAGGGAATGCAGCTGAAATGCCCAGAGCAGGGTGCCAGGGGCTGAGCAAGGGAAA-
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87839803 803 - 129401213 I
e ponAbe2.chr4             198247182 483 + 198332218 M

a score=45161.000000
s hg38.chr4_KI270925v1_alt    462119 13 +    555799 GAGGGCAACCAAG
s panTro4.chr4             193175381 13 + 193495092 GAGGGCAACCAAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198247665 13 + 198332218 GAGGGCAACCAAG
i ponAbe2.chr4             M 483 C 0
s nomLeu3.chr7b            113918977 13 + 115148730 GAGGGCAACCAAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183836100 13 + 184069350 GAGGGCAGCCAAG
i rheMac3.chr5             C 0 I 1
s macFas5.chr5             189228567 13 + 189454096 GAGGGCAGCCAAG
i macFas5.chr5             C 0 I 1
s papAnu2.chr5             178647286 13 + 178775436 GAGGGCAGCCAAG
i papAnu2.chr5             C 0 I 1
s chlSab2.chr7             135581241 13 + 135778131 GAGGGCAGCCAAG
i chlSab2.chr7             C 0 I 304
s calJac3.chr3             190691024 11 - 190850796 GAGGGCAACCA--
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18136120 13 -  59632846 GAGGGTATCCAAG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87839803 803 - 129401213 I

a score=1365.000000
s hg38.chr4_KI270925v1_alt    462132 1 +    555799 A
s panTro4.chr4             193175394 1 + 193495092 A
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198247678 1 + 198332218 A
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113918990 1 + 115148730 A
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190691035 1 - 190850796 A
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18136133 1 -  59632846 A
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87839803 803 - 129401213 I
e chlSab2.chr7             135581254 304 + 135778131 I
e papAnu2.chr5             178647299 1 + 178775436 I
e macFas5.chr5             189228580 1 + 189454096 I
e rheMac3.chr5             183836113 1 + 184069350 I

a score=56677.000000
s hg38.chr4_KI270925v1_alt    462133  34 +    555799 GG------------------------------------------------------------------------------------------------------GGGCCAGGCAGGAAA---GATGCCGG------TGTCAGAGC
s panTro4.chr4             193175395  34 + 193495092 GG------------------------------------------------------------------------------------------------------GGGCCAGGCAGGAAA---GATGCCGG------TGTCAGAGC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198247679  34 + 198332218 GA------------------------------------------------------------------------------------------------------GTGCCAGGCAGGAAA---GATGCCGG------TGTCAGAGC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113918991  34 + 115148730 GG------------------------------------------------------------------------------------------------------GAGCCAGGCAGGAAA---GATGCCGG------TGTCAGAGC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183836114  33 + 184069350 -G------------------------------------------------------------------------------------------------------GGGCCAGGCCGGGAA---GATGCCGG------TGTCAGAGC
i rheMac3.chr5             I 1 C 0
s macFas5.chr5             189228581 135 + 189454096 -GGGGCCAGGCCGGGAAGATGCCGGTGTCAGAGCAGATGGGGACAGAGTGAGGTGGCCCCCAGCACACTGCAGAGCCTGGGCGGGAAAGGAGGGCAGCCAAGCAGGGCCAGGCCGGGAA---GATGCCGG------TGTCAGAGC
i macFas5.chr5             I 1 C 0
s papAnu2.chr5             178647300  33 + 178775436 -G------------------------------------------------------------------------------------------------------GGGCCAGGCCGGGAA---GATGCCGG------TGTCAGAGC
i papAnu2.chr5             I 1 I 358
s chlSab2.chr7             135581558  34 + 135778131 ------------------------------------------------------------------------------------------------------CAGGGCCAGGCCGGGAA---GATGCTGG------TGTCAGAGC
i chlSab2.chr7             I 304 C 0
s calJac3.chr3             190691036  37 - 190850796 GG------------------------------------------------------------------------------------------------------GGGCCAAGAAGGAAAGCTGATGCTGG------TGTCAGAGC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18136134  37 -  59632846 ---------------------------------------------------------------------------------------------------------GGTAGGGCAAGAGG---GAAACCTGGTATACTTTTAGATT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87839803 803 - 129401213 I

a score=262527.000000
s hg38.chr4_KI270925v1_alt    462167 109 +    555799 CCAAGCAGGGTAAGAAGGGCACCCACACAGAACTatgtcaaaagataccaagccacctgaaagaggctccca-tagcaaaagccagaaaacaaaat-caccattaaataag
s panTro4.chr4             193175429 110 + 193495092 CCAAGCAGGGTAAGAAGGGCACCCACACAGAACTGtgtcaaaagataccaagccacctgaaagaggctcccactagcaaaagccagaaaacaaaat-caccgtcaaataaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198247713 110 + 198332218 CCCAGCAGGGTAAGAAGGGCACCCACACAGAACTGtgtcaaaagataccaagccacctgaaagaggctccgactagcaaaagccagaaagcaaaat-cacaatcaaataaa
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113919025 110 + 115148730 CCAAGCAGGGTAAGAAGGGCACCCACACAGAACTGtgtcaaaagataccaagccacctgaaagaggctcccactagcaaaagccagaaaacaaaat-caccatcaaataaa
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183836147 110 + 184069350 CCAAGCAGGGTAGGAAGGGCCCCCACACAGAACTGTGACaaaagacaccaagccacctgaaagaggctctcgctagcaaaagctagaaaacaaaat-caccatcaaataca
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189228716 110 + 189454096 CCAAGCAGGGTAGGAAGGGCCCCCACACAGAACTGTGACaaaagacaccaagccacctgaaagaggctctcgctagcaaaagctagaaaacaaaat-caccatcaaataca
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135581592 110 + 135778131 CCAAGCAGGGTAGGAAGGGCCCCCACACAGAACTGTGACaaaagacaccaagccacctgaaagaggctctcactagcaaaagctagaaaacaaaat-caccatgaaataca
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190691073 107 - 190850796 -CCAGCA-GGTAAGAAGGGCCCCC-TACAGAACcatgtcaaaagagactaagccacctgaaagaggttcccattgggaaaagctagaaaacaaaat-catcatcaaataaa
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18136171 109 -  59632846 TCAAGTGAGGTATAAAGGACATTCACACTgagatgtgctaaaagatcaaaagccaaatt-aaggggcttccaggagcaaaagccagtggggggaatgaaacatcaaataa-
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87839803 803 - 129401213 I
e papAnu2.chr5             178647333 358 + 178775436 I

a score=534587.000000
s hg38.chr4_KI270925v1_alt    462276 166 +    555799 taatggtaacaggataaaatttattgaataaaatagaaaaccacaaatcgtcat-gatgtaaataaatatatgaatcaatTGGagtttgatgaggaacctcatgtttttatagtctcaacatacttcccaccaagtatgtgctaattgcaaa-ggaaaataaataact
s panTro4.chr4             193175539 166 + 193495092 tgatggtaacaggataaaatttattgaataaaatagaaaatcacaaatcatcat-gatgtaaataaatatatgaatcaattggagtttgatgaggaacctcatgtttttacagtctcaacatacttcccaccaagtatgtgctaattgcaaa-ggaaaataaataact
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198247823 166 + 198332218 tgatggtaactggataaaatttattgaataaaatagaaaaccacaaatcgtcat-gatgtaaataaatatatgaatcaattggagtttgatgaggaaactcatgtttttatagtctcaacatacttcccgccaagtatgtgctaattgcaaa-ggaaaataaataact
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113919135 166 + 115148730 tgatggtaacaggataaaatttattgaataaaacagaaaaccacaaatcgtcat-gatgtaaataaatatatgaatcaattggagtttgatggggaacctcgtgtttttatagtctcaacatactgcccaccaagtatgtgctaattgcaaa-ggaaaataaataact
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183836257 160 + 184069350 tgatggtaacaggatataatttattgaataaaatagaaaa-cacaaatcctcaa-gatgtaaataaatacatgaatcaattggagtttgatgagaaacctcatgtttttatagtctcaacatacttcccaccaa-tatgtgctaattgcaaa-gga----aaataact
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189228826 164 + 189454096 tgatggtaacaggatataatttattgaataaaatagaaaa-cacaaatcctcaa-gatgtaaataaatacatgaatcaattggagtttgatgagaaacctcatgtttttatagtctcaacatacttcccaccaa-tatgtgctaattgcaaa-ggaaaataaataact
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178647691 164 + 178775436 TGATGGTAACAggatataatttattgaataaaatagaaaa-cacaaatcctcaa-gatgtaaataaatacatgaatcaaTTGGAGTTTGATGAGAAACCTCATGTTTTTATAGTCTCAACATACTTCCCACCAA-TATGTGCTaattgcaaa-ggaaaataaataact
i papAnu2.chr5             I 358 C 0
s chlSab2.chr7             135581702 164 + 135778131 tgatggtaacaggatataatttattgaataaaatagaaaa-cacaaatcctcca-gatgtaaataaatacatgaatcaattggagtttgatgagaaacctcatgtttttatagtctcagcatacttcccaccaa-tatgtgctaattgcaaa-ggaaaacaaataact
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190691180 162 - 190850796 tgatgataacaggatataatttactgaataaaacagaaaaccacaaatcctcat-gatgtaaataaata-aTGAATCAACTGGagtttgctgaggaa---catattgttatagtctcaacatacttcccaccaagtatgtgctaattacaaa-ggaaaatgagtaact
i calJac3.chr3             C 0 I 3769
s canFam3.chr16             18136280 168 -  59632846 tggtagcaatggattctagtccatggaataatgtagaaaaacataaatccatatggatataaacaagtatataaattaatTCaagtttgctgaggaatgcaatactttcacagattcaaagtacttcccacaaagtacttgttaattacaaagggaaaatgagcaact
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87839803 803 - 129401213 I

a score=8852.000000
s hg38.chr4_KI270925v1_alt    462442 3 +    555799 tta
s panTro4.chr4             193175705 3 + 193495092 ttg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198247989 3 + 198332218 tta
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113919301 3 + 115148730 tta
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183836417 3 + 184069350 tta
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189228990 3 + 189454096 tta
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178647855 3 + 178775436 tta
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135581866 3 + 135778131 tta
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             18136448 3 -  59632846 tta
i canFam3.chr16            C 0 I 163
e mm10.chr8                 87839803 803 - 129401213 I
e calJac3.chr3             190691342 3769 - 190850796 I

a score=79872.000000
s hg38.chr4_KI270925v1_alt    462445 33 +    555799 ATGAATAACTTTAACTTTAGTATATTACATACT
s panTro4.chr4             193175708 33 + 193495092 atgaataactttaactttagtatattacatact
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198247992 33 + 198332218 atgaataactttaactttagtatattacatact
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113919304 33 + 115148730 atgaataactttaactttagtatactatatact
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183836420 33 + 184069350 atgaataactttaactttagtgtattatatact
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189228993 33 + 189454096 ATGAATAACTTTAACTTTAGTGTATTATATACT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178647858 33 + 178775436 atgaATAACTTTAACTTTAGTGTATTATATACT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135581869 33 + 135778131 ATGAATAATTTTAACTTTAGTGTATTATATACT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87839803 803 - 129401213 I
e canFam3.chr16             18136451 163 -  59632846 I
e calJac3.chr3             190691342 3769 - 190850796 I

a score=166391.000000
s hg38.chr4_KI270925v1_alt    462478 59 +    555799 AGACAATGTTTGTGCAATAGTTTATGAACACAAAGTACTATTATTATGGCAGCACTAAA
s panTro4.chr4             193175741 59 + 193495092 agacaatgtttgtgcaatagtttatgaacacaaagtaccattattatggcagcactaaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198248025 55 + 198332218 agacaa----tgtgcaatagtttatgaacacaaagtactattattatggcagcactaaa
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113919337 59 + 115148730 agacaatgtttgtgcaatagtttataaacacaaagtactattattatggcagcactaaa
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183836453 58 + 184069350 agataatgtttgtgcaatag-ttatgaacacaaagtactattattatggcggcactaaa
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189229026 58 + 189454096 AGATAATGTTTGTGCAATAG-TTATGAACACAAAGTACTATTATTATGGCGGCACTAAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178647891 58 + 178775436 AGATAATGTTTGTGCAATAG-TTATGAACACAAAGTACTATTATTATGGCGGCACTAAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135581902 58 + 135778131 AGATAATGTTTGTGCAACAG-TTATGAACACAAAGTACTACTATTATGGCAGCACTAAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190695111 59 - 190850796 AGATAATGTTTGTGCAATAATTTATGGTCATGAAGTACTATTATTATGGCAGCACTAAA
i calJac3.chr3             I 3769 C 0
e mm10.chr8                 87839803 803 - 129401213 I
e canFam3.chr16             18136451 163 -  59632846 I

a score=6345.000000
s hg38.chr4_KI270925v1_alt    462537 2 +    555799 TA
s panTro4.chr4             193175800 2 + 193495092 ta
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198248080 2 + 198332218 ta
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113919396 2 + 115148730 ta
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183836511 2 + 184069350 ta
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189229084 2 + 189454096 TA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178647949 2 + 178775436 TA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135581960 2 + 135778131 TA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190695170 2 - 190850796 TA
i calJac3.chr3             C 0 T 3825
s canFam3.chr16             18136614 2 -  59632846 tc
i canFam3.chr16            I 163 C 0
e mm10.chr8                 87839803 803 - 129401213 I

a score=42116.000000
s hg38.chr4_KI270925v1_alt    462539 16 +    555799 CTCCATCTGCCTgtgg
s panTro4.chr4             193175802 16 + 193495092 ctccatctgcctgtgg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198248082 16 + 198332218 ctccatctgcctgtgg
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113919398 16 + 115148730 ctccatctgcctgtgg
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183836513 16 + 184069350 ctccatctaccagtga
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189229086 16 + 189454096 CTCCATCTACcagtga
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178647951 16 + 178775436 CTCCATCTACCAGTGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135581962 16 + 135778131 CTCCATCTACcagtga
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             18136616 16 -  59632846 ctccctctgtctgtgt
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87839803 803 - 129401213 I
e calJac3.chr3             190695172 3825 - 190850796 T

a score=2025148.000000
s hg38.chr4_KI270925v1_alt    462555 664 +    555799  
s panTro4.chr4             193175818 662 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198248098 668 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113919414 668 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183836529 667 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189229102 667 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178647967 669 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135581978 667 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190691347 662 - 190850796  
i calJac3.chr3             T 3825 C 0
s canFam3.chr16             18136632 594 -  59632846  
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87839803 803 - 129401213 I

a score=2172463.000000
s hg38.chr4_KI270925v1_alt    463219 657 +    555799  
s panTro4.chr4             193176480 657 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198248766 658 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113920082 655 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183837196 655 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189229769 655 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178648636 654 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135582645 661 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190692009 629 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87840606 543 - 129401213  
i mm10.chr8                I 803 I 771
s canFam3.chr16             18137226 660 -  59632846  
i canFam3.chr16            C 0 C 0

a score=1461357.000000
s hg38.chr4_KI270925v1_alt    463876 458 +    555799  
s panTro4.chr4             193177137 458 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198249424 458 + 198332218  
i ponAbe2.chr4             C 0 I 6566
s nomLeu3.chr7b            113920737 456 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183837851 459 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189230424 459 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178649290 459 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135583306 459 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190692638 451 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18137886 536 -  59632846  
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87841149 771 - 129401213 I

a score=716225.000000
s hg38.chr4_KI270925v1_alt    464334 250 +    555799 aaacaaatgctatggtcagcattaaaatttgtctacatttcatgcatttttaatgcataaaagctgtATATCTTAAAAATGAGGGTGTCATATATTTTTTAAAAAA----ACACCAATTCCATAGAGTTTTCACTGACACAATGA---CTAAAATGGCCAATCATTCTTCCTTTTCAAAAGCTAACGATAACATGAACAAGGATGGAGAAATATGGGATTTGAATTCCTAATTCCTTAATGTCTTGAATTAG-GACTT
s panTro4.chr4             193177595 251 + 193495092 aaacatatgctatggtcagcattaaaatttgtctacatttcatgcatttttaatgcataaaagctgtATATCTTAAAAATGAGGGTGTCATAGATTTTTTTAAAAA----ACACCAATTCCGTAGAGTTTTCACTGACACAATGA---CTAAAATGGCCAATCATTCTTCCTTTTCAAAAGCTAACGATAACATGAACAAGGATGGAGAAATATGGGATTTGAATTCCTAATTCCTTAATGTCTTGAATTAGAGACTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198256448 247 + 198332218 AAACATATGCTAT-GTCAGCATTAAAA-TTGTCTACATTTCATGCA-TTTTAATGCAT-AAAGCTGTATATCTTAAAAATGAGCGTGTCATAGATTTTTTTTAAAA----ACACCAATTCCATAGAGTTTTCACTGACACAATGA---CTAAAATGGCAAATCATTCTTCCTTTTCAAAAGCTAACGATAACATGAACAAGGATGGAGAAATACGGGATTTGAATTCCTAATTCCTTAATGTCTTGAATTAGAGAATT
i ponAbe2.chr4             I 6566 C 0
s nomLeu3.chr7b            113921193 250 + 115148730 aaacatatgctacggtcagcattaaaatttgtctacatttcatgcatttttaatgcataaaagctgtATATCTTAAAAATGAGGGTGTCATAGATTTTTTT-AAAA----ACACCAATTCCATAGAGTTTTCACTGACACAATGC---CTAAAATGGGAAATCATTCTTCCTTTTCAAAAGCTAACGATAACATGAACGAGGACGGAGAAATACGGGATTTGAATCCCTAATTCCTTAATGTCTTGAATTAGAGACTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183838310 251 + 184069350 AAACATATGCTCCGGTCAGCATTAAAATTTGTCTACATTTCATGCATTTTTAATGCATAAAAGCTGTATATCTTAAAAATGAGCGTGTCATAGAATGTTTTAAAAA----ACACAAATTCCATGGAGTTTTCACTGACACAATGA---CTAATATGGCAAATCATTCTTCATTTTCAAAAGCTAATGATAACATGAACAAGGATGGAGAAATACGGGATTTGAATCCCTAATTCCTTAATGTCTTGAATTAGAGTCTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189230883 251 + 189454096 AAACATATGCTCCGGTCAGCATTAAAATTTGTCTACATTTCATGCATTTTTAATGCATAAAAGCTGTATATCTTAAAAATGAGCGTGTCATAGAATGTTTTAAAAA----ACACAAATTCCATGGAGTTTTCACTGACACAATGA---CTAATATGGCAAATCATTCTTCATTTTCAAAAGCTAATGATAACATGAACAAGGATGGAGAAATACGGGATTTGAATCCCTAATTCCTTAATGTCTTGAATTAGAGTCTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178649749 251 + 178775436 AAACATATGCTCTGGTCAGCATTAAAATTTGTCTACATTTCATGCATTTTTAATGCATAAAAGCTGTATATCTTAAAAATGAGCGTGtcatagaatgttttaaaaa----acacaaattccaTGGAGTTTTCACTGACACAATGA---CTAAAATGGCAAAtcattcttcattttcaaaagctAATGATAACATGAACAAGGATGGAGAAATACGGGATTTGAATCCCTAATTCCTTAATGTCTTGAATTAGAGTCTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135583765 250 + 135778131 AAACGTATGCCATGGTCAGCATTAACATTTGTCTACATTTCATGCATTTTTAACGCATAAAAGCT-TATATCTTAAAAATGAGGGTGTCATAGAATGTTTTAAAAA----ACACAAATTCCATGGAGTTTTCACTGACACAATGA---CTAAAATGGCAAATCATTCTTCATTTTCAAAAGCTAATGATAACATGAACAAGGATGGAGAAATACGGGATTTGAATCCCTAATTCCTTAATGTCTTGAATTAGAGTCTT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190693089 253 - 190850796 AAGAATATGCTATGGTCAGCATTAAAATTTGTCCACATGTAGTGCATTTTTAATCCATAAAAGATGTAGATCTTAAAGATGATGGTGTCATAGAAT-----AAAAAAACTACACCGATTCTATGGAGTTTTCACTGACACAATGACTGCTAAAACGGCAAATTGTTCTTCCTTTTCAAAAGCTAACGATAACATGAACAAGGATTGTAAAATATGGGATTTGAATCTCTAATTTCTTAATGTCCTGAATCAGAGACTT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18138422 151 -  59632846 aaacacatgctattgtcagttttaaaaatagtctacatttaatgcattttaatcttataaaagttgtATATATTG-----------------------------------GCA------TCATGGAATTTTTATTGGCATCATGG------------------------AATTTTTAAAAAATAAAGGCACCAGTTCCATAGACAATG-----------------------TTCCCTGA-------------------
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87841149 771 - 129401213 I

a score=3935553.000000
s hg38.chr4_KI270925v1_alt    464584 1154 +    555799  
s panTro4.chr4             193177846 1165 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198256695 1111 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113921443 1124 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183838561 1126 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189231134 1126 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178650000 1123 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135584015 1121 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190693342 1132 - 190850796  
i calJac3.chr3             C 0 I 282
s mm10.chr8                 87841920 1014 - 129401213  
i mm10.chr8                I 771 C 0
s canFam3.chr16             18138573 1031 -  59632846  
i canFam3.chr16            C 0 C 0

a score=-1341.000000
s hg38.chr4_KI270925v1_alt    465738 11 +    555799 ttt---tGAAGGAC---
s panTro4.chr4             193179011 10 + 193495092 TTT----GAAGGAC---
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198257806  7 + 198332218 -------GAAGGAC---
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113922567 14 + 115148730 tttttttGAAGGAC---
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183839687  7 + 184069350 -------GAAGGGC---
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189232260  7 + 189454096 -------GAAGGGC---
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178651123  7 + 178775436 -------GAAGGGC---
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135585136  7 + 135778131 -------GAAGGGC---
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87842934  6 - 129401213 -----ACAAAT------
i mm10.chr8                C 0 C 0
s canFam3.chr16             18139604 11 -  59632846 ------AAAAAAACAAC
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190694474 282 - 190850796 I

a score=212740.000000
s hg38.chr4_KI270925v1_alt    465749 65 +    555799 TGTATCTGGTCAAAGTCCACAGGATTGTTTTAACCTAGTCCTTGGATTAGAGAAA--TCATAAAACT
s panTro4.chr4             193179021 65 + 193495092 TGTATCTGGTCAAAGTCCACAGGATTGTTTTAACCTAGTCCTTGGATTAGAGAAA--TCATAAAACT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198257813 65 + 198332218 TGTATCTGGTCAAAGTCCACAGGATGGTTTTAACCTAGTCCTTGGATTAGAGAAA--TCCTAAAACT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113922581 65 + 115148730 TGTATCTGGTCAAAGTCCACAGGATTGTTTTAAACTAGTCCTTGGATTAGAGAAA--TCCTAAAACT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183839694 64 + 184069350 TGTATCTGGTCAAAATCCACAGGGTTGTTTTAACCTAGTCC-TGGATTACAGAAA--CCCTAAAACT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189232267 64 + 189454096 TGTATCTGGTCAAAATCCACAGGGTTGTTTTAACCTAGTCC-TGGATTAGAGAAA--CCCTAAAACT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178651130 64 + 178775436 TGTATCTGGTCAAAATCCACAGGATTGTTTTAACCTAGTCC-TGGATTAGAGAAA--TCCTAAAACT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135585143 64 + 135778131 TGTATCTGGTCAAAATCCACAGGATTGTTTTAACCTAGTCC-TGGATTAGAGAAA--TCCTAAAACT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190694756 65 - 190850796 TGTATCTGTTCAAAGTCCACAGGATTGTTTTAACCCAGTCCTTGGATTAGAGAAA--CCCTAAAACT
i calJac3.chr3             I 282 C 0
s mm10.chr8                 87842940 62 - 129401213 --TGCTTAGTCAAGG-CTACAGG-CTATTTTAGCTCAACCT-TGGACTAGAAGAGACTCATACGACT
i mm10.chr8                C 0 C 0
s canFam3.chr16             18139615 63 -  59632846 TTTATCTGACCCACGTC-ACTTGGCATTTTGAACATAATTCTTTGGTTA-AGAAA--TACTAAGACT
i canFam3.chr16            C 0 I 223

a score=4500.000000
s hg38.chr4_KI270925v1_alt    465814 1 +    555799 C
s panTro4.chr4             193179086 1 + 193495092 C
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198257878 1 + 198332218 C
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113922646 1 + 115148730 C
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183839758 1 + 184069350 C
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189232331 1 + 189454096 C
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178651194 1 + 178775436 C
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135585207 1 + 135778131 C
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190694821 1 - 190850796 C
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87843002 1 - 129401213 C
i mm10.chr8                C 0 C 0
e canFam3.chr16             18139678 223 -  59632846 I

a score=48401.000000
s hg38.chr4_KI270925v1_alt    465815 13 +    555799 ATACAGGACTCTT
s panTro4.chr4             193179087 13 + 193495092 ATACAGGACTCTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198257879 13 + 198332218 ATACAGGACTCTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113922647 13 + 115148730 ATACAGGACTCTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183839759 13 + 184069350 ATATAGGACTCTT
i rheMac3.chr5             C 0 I 1
s macFas5.chr5             189232332 13 + 189454096 ATATAGGACTCTT
i macFas5.chr5             C 0 I 563
s papAnu2.chr5             178651195 13 + 178775436 ATATAGGACTCTT
i papAnu2.chr5             C 0 I 1
s chlSab2.chr7             135585208 13 + 135778131 ATAAAGGACTCTT
i chlSab2.chr7             C 0 I 1
s calJac3.chr3             190694822 13 - 190850796 ATATAGGGCTCTT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87843003 13 - 129401213 TTGgaggacactg
i mm10.chr8                C 0 C 0
s canFam3.chr16             18139901 13 -  59632846 ATGTAGAATTCTT
i canFam3.chr16            I 223 C 0

a score=1811.000000
s hg38.chr4_KI270925v1_alt    465828 4 +    555799 AGGT
s panTro4.chr4             193179100 4 + 193495092 AGGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198257892 4 + 198332218 AGGT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113922660 4 + 115148730 AGGT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183839773 3 + 184069350 AGA-
i rheMac3.chr5             I 1 I 470
s macFas5.chr5             189232908 3 + 189454096 AGA-
i macFas5.chr5             I 563 C 0
s papAnu2.chr5             178651209 3 + 178775436 AGA-
i papAnu2.chr5             I 1 C 0
s chlSab2.chr7             135585222 3 + 135778131 AGA-
i chlSab2.chr7             I 1 C 0
s calJac3.chr3             190694835 4 - 190850796 AGAT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87843016 4 - 129401213 aggt
i mm10.chr8                C 0 C 0
s canFam3.chr16             18139914 4 -  59632846 AGAT
i canFam3.chr16            C 0 C 0

a score=5500.000000
s hg38.chr4_KI270925v1_alt    465832 1 +    555799 G
s panTro4.chr4             193179104 1 + 193495092 G
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198257896 1 + 198332218 G
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113922664 1 + 115148730 G
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183840246 1 + 184069350 G
i rheMac3.chr5             I 470 C 0
s macFas5.chr5             189232911 1 + 189454096 G
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178651212 1 + 178775436 G
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135585225 1 + 135778131 G
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190694839 1 - 190850796 G
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87843020 1 - 129401213 g
i mm10.chr8                C 0 I 239
s canFam3.chr16             18139918 1 -  59632846 G
i canFam3.chr16            C 0 C 0

a score=28195.000000
s hg38.chr4_KI270925v1_alt    465833 7 +    555799 TTTACTT
s panTro4.chr4             193179105 7 + 193495092 TTTACTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198257897 7 + 198332218 TTTACTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113922665 7 + 115148730 TTTACCT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183840247 7 + 184069350 TTTACTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189232912 7 + 189454096 TTTACTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178651213 7 + 178775436 TTTActt
i papAnu2.chr5             C 0 I 409
s chlSab2.chr7             135585226 7 + 135778131 TTTACTT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190694840 7 - 190850796 TTTACAT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87843260 7 - 129401213 CTTCCCT
i mm10.chr8                I 239 C 0
s canFam3.chr16             18139919 7 -  59632846 TTTACTT
i canFam3.chr16            C 0 C 0

a score=80812.000000
s hg38.chr4_KI270925v1_alt    465840 29 +    555799 CATAGTA---TCATTTGAAATCAGTAAGCATT
s panTro4.chr4             193179112 29 + 193495092 CATAGTA---TCATTTGAAATCAGTAAGCATT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198257904 29 + 198332218 CATAGTA---TCATGTAAAGTCAGTAAGCATT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113922672 29 + 115148730 CATAGTA---TCATGTAAAATCAGTAAGCATT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183840254 29 + 184069350 CACAGTA---TCATGTAAAATCAGTAGGCATT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189232919 29 + 189454096 CACAGTA---TCATGTAAAATCAGTAGGCATT
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135585233 28 + 135778131 CACAGTA---TCATGTAAAATCAGT-GGCATT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190694847 22 - 190850796 CATAGTA----------AAATCAGTAAGTGTT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87843267 29 - 129401213 CATAGGA---TCATATAAAACCAGTAAGCACA
i mm10.chr8                C 0 C 0
s canFam3.chr16             18139926 32 -  59632846 CATAGTAAAATCATGTAAAATCAATAAGCATT
i canFam3.chr16            C 0 I 1524
e papAnu2.chr5             178651220 409 + 178775436 I

a score=283017.000000
s hg38.chr4_KI270925v1_alt    465869 103 +    555799 AAGTCAGAAACGATGGGCGAGGTAAG-------------------GTATTATATTAAATTAAGTGGTAAAAACAGCACAGAATGTGGAATTCGAAGATCTGTTCTTGATTTTCAAGCACTGT
s panTro4.chr4             193179141 103 + 193495092 AAGTCAGAAACGATGGGCGAGGTAAG-------------------GTATTATATTAAATTAAGTGGTAAAAACAGCACAGAATGTGGAATTCGAAGTTCTGTTCTTGATTTTCAAGCACTGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198257933 103 + 198332218 AAGTCAGAAACAATGGGTGAGGTAAG-------------------GTATTATATTAAATTAAGTGGTAAAAACAGCACAGAATGTGGAATTCGAAGTTCTGTTCTCGATTTTCAAGCACTGT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113922701 103 + 115148730 AAGTCAGAAACGATGGACGAGGTAAG-------------------GTATTATATTAAATTAAGTGGTAAAAACAGCACAGAATGTGGAATTCGAAGCTCTGTTCTTGATTTGCAAGCACTGT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183840283 103 + 184069350 AAGTCAGAAACAATGGGCCAGGTAAG-------------------GTATTATATTAAATTAAGTGGTAAAAACAGCACAGAATGTGGAATTCGAAGTTCTGTTCTTGATTTTCAAGCACTAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189232948 103 + 189454096 AAGTCAGAAACAATGGGCCAGGTAAG-------------------GTATTATATTAAATTAAGTGGTAAAAACAGCACAGAATGTGGAATTCGAAGTTCTGTTCTTGATTTTCAAGCACTAC
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135585261 103 + 135778131 AAGTCAGAAACAATGGGCCAGGTAAG-------------------GTATTACATTCAATTAAGTGGTAAAAACAGCACAGAATGTGGAATTCAAAGTTCTGCTCTTGATTTTCAAGCACTAC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190694869 103 - 190850796 AAGTCAGAAACTATGGGCTAGGTAAG-------------------GTATTATATTAAATAAAGTGGTAAAAAGAGCACAGAAAGTACAATTCAAAGTTCTGTTCTTGAATTTCAAGCACTGT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87843296  81 - 129401213 CATTCAGAAACAATGGACCCTGTAAT-------------------ATACTGTATATAATTATGAGGTAAAAG-AGCATAAAATTTATAATCAGAAGTACAG---------------------
i mm10.chr8                C 0 C 0
s canFam3.chr16             18141482 121 -  59632846 AAATCCAAAAAAATGAGCAAGGTAAGAAAAAAACGGACCATCTAAATACTACATTATGTTAAGAGgtgaatagaacacaagatatgtaatcagaaattctgttcttgaattg-aagtactga
i canFam3.chr16            I 1524 C 0
e papAnu2.chr5             178651220 409 + 178775436 I

a score=268538.000000
s hg38.chr4_KI270925v1_alt    465972 76 +    555799 CCATCAGTTAAAATTAATTAGATGTGTGACTTTTTC--AGAAATTTGGCCTCTTCATCCTTAAAACTGAGAATATGTA-----------
s panTro4.chr4             193179244 76 + 193495092 CCATCAGTTAAAATTAATTAGATGTGTGACTTTTTC--AGAAATTTGACCTCTTCATCCTTAAAACTGAGAATATGTA-----------
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198258036 76 + 198332218 CCATCAGTTAAAATTAATTAGATGTGTGACTTTTTC--AGAAATTTGACCTCTTCATCCTTAAAACTGAGAATATGTA-----------
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113922804 76 + 115148730 CCATCAGTTAAAATTAATTAGATGTGTGACTTTTTC--AGAAATTTGAACTCTTCATCCTTAAAACTGAGAATATGTA-----------
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183840386 76 + 184069350 CCATCAGTTAAAATTAATTAGATGTGTGACTTTTTC--AGAAATTTGACCTCTTCATCCTTAAAACTGAGAATATGTA-----------
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189233051 76 + 189454096 CCATCAGTTAAAATTAATTAGATGTGTGACTTTTTC--AGAAATTTGACCTCTTCATCCTTAAAACTGAGAATATGTA-----------
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178651629 76 + 178775436 CCATCAGTTAAAATTAATTAGATGTGTGACTTTTTC--AGAAATTTGACCTCTTCATCCTTAAAACTGAGAATATGTA-----------
i papAnu2.chr5             I 409 C 0
s chlSab2.chr7             135585364 76 + 135778131 CCATCAGTTAAAATTAATTAGATGTGTGACTTTTTC--AGAAATTTGACCTCTTCATCCTTAAAACTGAGAATATGTA-----------
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190694972 75 - 190850796 ACATCAGTTAAAACTAATTAGATG-ATGACTTTTTC-AAGAAATTTGACCTCTTCA-ACTTAAAACTCAGAATATGTA-----------
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87843377 78 - 129401213 ACATCAGTTGAAAATGATGAACTGAGTATCTGTGGCCAAGACATTTAACCTCTTTATCCTCTGAATTGAGAAAATACA-----------
i mm10.chr8                C 0 I 1315
s canFam3.chr16             18141603 88 -  59632846 -tttcatttcaagttaactagctgtgtaaactttggcaagacatttgacttctttACTCAAAAAATGGGAAAAAAATGGAGAAAAGATA
i canFam3.chr16            C 0 C 0

a score=684865.000000
s hg38.chr4_KI270925v1_alt    466048 225 +    555799 --TTTATACCTAATAATATCGAGAACAACATAATCACTATATTTACTTCACAAGATTATTTAGAAATTCAAAGAAGATAAGATTTGTGCAATAATTTATGACCACA--------GAGTACTATTATTATGGCAGCACTAACTCA-----TAAACAAGAAGCCATCACGTTTGTTGACCCTACAAAAGCACTGTACCTTCCAATAATTCTAGATACCTGGGAACGTGGCATGAT------TTCAGTA
s panTro4.chr4             193179320 225 + 193495092 --TTTATACCTAATAATATCGAGAACAACATAATCACTATATTTACTTCACAAGATTATTTAGAAATTCAAAGAAGATAACATTTGTGCAATAATTTATGACCACA--------AAGTACTATTATTATGGCAGCACTAACTCA-----TAAACAAGAAGCCATCACGTTTGTTGACCCTACAAAAGCACTATACCTTCCAATAATTCTAGATACCTGGGAACGTGGCATGAT------TTCAGTA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198258112 225 + 198332218 --TTTATACCTAATAATATCAAGAACAACATAATTACTATATTTACTTCACAAGATTATTTAGAAACTCAAAGAAGATAACAGTTGTGCAATAATTTATGACCACA--------AAGTACTATTATTATGGCAGCACTAACTCA-----TAAACAAGAAGCCATCACATTTGTTGACCCTACAAAAGCACTGTACCTTCCAATAATTCTAGATACCTGGGAATGTGGCATGAT------TTCAGTA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113922880 217 + 115148730 --TTTATACCTAATAATATCAAGAACAATATAATTACTATATTTACTTCACAAG---ATTTAGAAATTCAAAGAAGATAACATTTATGCAATAATTTATGACCACA--------AAGTACTATTATTATGGCAGCACTAACTCA-----TAAACAAGAAGCCATCACATTTGTTGGCCCTACAAAAGC-----ACCTTCCAATAATTCTAGATACCTGGGAACGTGGCATGAT------TTCAGTA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183840462 225 + 184069350 --TTTATAACTAATAATACCAAGAAAAGTATAATGACTAtatttacttcacaggattatttagaaattcaaagaagataatgcttgtgcaataatttatgaccaca--------aagtactatTATTCTGGCAGTACTAACTCA-----CAAACAAGAAGCCATCACATTTGGTGACCCTACAAAAGCACTGTACCTTCCAATAATTCTAGATGCCTGGGAATGTGGCCCGAT------TTCCCTA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189233127 225 + 189454096 --TTTATAACTAATAATACCAAGAAAAGTATAATGACTAtatttacttcacaggattatttagaaattcaaagaagataatgcttgtgcaataatttatgaccaca--------aagtactatTATTCTGGCAGTACTAACTCA-----CAAACAAGAAGCCATCACATTTGGTGACCCTACAAAAGCACTGTACCTTCCAATAATTCTAGATGCCTGGGAATGTGGCCCGAT------TTCCCTA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178651705 225 + 178775436 --TTTATAACTAATAATACCAAGAAAAGTATAATGACTATATTTACTTCACAGGATTATTTAGAAATTCAAAGAAGATAATGCTTGTGCAATAATTTATGACCACA--------AAGTACTATTATTCTGGCAGCACTAACTCA-----CAAACAAGAAGCCATCACATTTGGTGACCCTACAAAAGCACTGTACCTTCCAATAATTCTAGATGCCTGGGAACGTGGCCCGAT------TTCCCTA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135585440 222 + 135778131 --TTTATAACTAATAATACCAAGAAAAGTATAATGACTATATTTACTTCACAGG---ATTTAGAAATTCAAAGAAGATAATGTTTGTGCAATAATTTATGACCACA--------AAGTACTATTATTCTGGCAGCACTAACTCA-----CAAACAAGAAGCCATCACATTTGGTGACCCTACAAAAGCACTGTACCTTCCAATAATTCTAGATGCCTGGGAACGTGGCCCGAT------TTCCCTA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190695047 217 - 190850796 --TTTATAACTAATAATATCAAGAACAACATAATTACTATATTCACTTCACAGGCTTATTT--------AAGGAAGATAATGTTTGTGCAATAATTTATGGTCATG--------AAGTACTATTATTATGGCAGCACTAAATAA-----TAAACAAGAAGCCATTACATTTGTTGACCCTACGAAATTATTGTACCTTCCAATAATTCCAGGGACCTGGAAACTTGACACGAT------TCCAGTA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18141691 237 -  59632846 ATCATACAAATAATAAT------AATAACATAATTATTACACTTATCTCACAACATTATTTGGGAAATCA---AAGATAATTTTTGTGCAATAATTTGTAAATAAGAACGATGTAAATGAAATCATCAAAGTAACACTAAACAACACAGTAACTAAGAAATCATCATGTTTGCCAACCCCACAAGTATACTGTTTCTTCCAAGAATTCTACATACTAGGAACTTTTACATGATACAATCCCCAGTG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87843455 1315 - 129401213 I

a score=1537995.000000
s hg38.chr4_KI270925v1_alt    466273 462 +    555799 TCCATGCTGCAGGATCATACACCAGGGAATGCATACGATCCAAGAAGACATTCTCTTCAGTAGCAAATTCATCATGGTCAGAGGTAA-AGCCACTGTTAGAAGCCAACATAGTCATGTGTAACACCATAATTAGATTGCTTGAAACTGACCTATGTCCAGTGCCAATATTTC-CTAGGTTCTTTTAGGATTGTCCGTAGTTGATTGCAAATTTGAGAATATGGAATGAAGATAATATGTAC-CGTACACAACTTATGGGAAATGTAAACCCACAACATGGTACATTTGCTGTGAAGTCGGTCTGGATCACTTTCAAGGACTCAGAGGTGGGTAAG------CCTACACAAGCCTATTCTGCATAAGTGAAAACTAACTTCAAGGAGCACCTGGTGAAGTGAGGAAGGCCTAGGGCTtgggagtgtttaaacagaaactaaataacccttggt-aagaaatgttac----aggaggg
s panTro4.chr4             193179545 460 + 193495092 TCCATGCTGCAGGATCATACGCCAGGGAATGCATACGATCCAAGAAGACATTCTCTTCAGTAGCAAATTCATCATGGTCAGAGGTAA-AGGGACGGTTAGAAGCTAACATAGTCATGTGTAACACCATAATTAGATTGCTTGAAACTGACCTATGTCCAGTGCCAATATTGC-CTAGGTCCTTTTAGGATTGTCCGTAGTTGATTGCAAATTTGAGAATATGGAATGAAGATAGTATGTAC-CGTACACAACTTATGGGAAATGTAAACCCACAACATGGTACATTTGCTGTGAAGTCGGTCTGGATCACTTTCAAGGACTC--AGGTGGGTAAG------CCTACACAAGCCTATTCTACATAAGTGAAAACTAACTTCAAGGAGCACCTGGTGAAGTGAGGAAGGCCTAGGGCTtgggagtgtttaaacagaagctaaataacccttggt-aagaaatgttac----aggaggg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198258337 459 + 198332218 TCCATGCTGCAGGATCATACACCAGGGAATGCACACGATCC---AAGACAATCTCTTCAGTAGCAAATTCATCATGGTCAGAGGTAA-AGGCACGGTTAGAAGCTAACGTAGTCATGTGTAACACCATAATTAGATTGCTTGAAATTGACCTATGTCCAGTGCCAATATTTC-CTAGGTTCTTTTAGGATTGTCCATAGTTTATTGCAAATTTGAGAAAATGGAATGAAGATAATATGTAC-CGTACACAACTTATGGGAAATGTAAACCCACAACATGGTACATTTGCTGTGAAGTCGGTCTGGATCACTTTCAAGGACTCAGAGGTGGGTAAG------CCTACACAAGACTATTCTACATAAGTGAAAACTAACTTCAAGGAGCACCTGGTGAAGTGAGGAAGGCCTAGGGCTtgggagtgtttaaacagaaactaaataacccttggt-aagaaatgttac----aggaggg
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113923097 456 + 115148730 TCCATGCTGCAGGATCATATGCCAGGGAATGCATACAATCCAAGCAGACATTCTCCTCAGTAGCAAATTCATCATGGTCAGAGGTAA-AGGCACGGTTAGAAGCTAACATAGTCATGTGTAACACCATAATTAGATTGCTTGAAACTGACCTATGTCCAGTGCCAATATTTC-CTAGGTTCTTTTAGGATTGTCCCTAGTTGATTGCAAATTTGAGAATATGGAATGAAGATAATATGTAC-CATATACAACTTATGGGAAATGTAGACCCACAACATGGTACATTTGCTGTGAAGTCGGTCTGGATCCATTTCAAGGACTCAGAGGTGGGTAAG------CCTACACAAGCCTATTCTACATAAGTGAGAACTA----CAAGGAACACCTGGTGAAGTGAGGCAGGCCTAGGGCTTGg--gtgtttaaacagaaactaaacaacccttggt-aagtaatgttac----aggaggg
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183840687 446 + 184069350 TCCATGCTGCAGGATCATACGGCAA-----------TATCCAAGAAGATATTCTCTTCAGTAGCAAATTCATCATGGTCAGAGGTAA-AGGCACAGTTAGACGCTAACATAGTCGTGTGTAACACCATAGTTAGCTTGCTTGAAACTGACCTATGTCCAGTGCCAATATTTC-CTAGGTTCTTTTAGGATTATCCCTAGTTGATTGCAAATTTGAGAATATGGAATGAAGATAATATGTAC-CATTCACAACTTATGGGAAATATAAACCCACAATATGGTACATTTGTTGTGAAGTCAGTCTGGATCCCATTCAAGGACTCAGAGGTGGGTAAG------CCCACACAGGCCTATTCTACATAAGTGAAAACCAGCTTTAAggggtacctggtgaagtgaggaaggcctaggtcttgggagtgtttaaacag-----aaataacccttagt-aagaaatgttac----aggaggg
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189233352 446 + 189454096 TCCATGCTGCAGGATCATACGGCAA-----------TATCCAAGAAGATATTCTCTTCAGTAGCAAATTCATCATGGTCAGAGGTAA-AGGCACAGTTAGACGCTAACATAGTCGTGTGTAACACCATAGTTAGCTTGCTTGAAACTGACCTATGTCCAGTGCCAATATTTC-CTAGGTTCTTTTAGGATTATCCCTAGTTGATTGCAAATTTGAGAATATGGAATGAAGATAATATGTAC-CATTCACAACTTATGGGAAATATAAACCCACAATATGGTACATTTGTTGTGAAGTCAGTCTGGATCCCATTCAAGGACTCAGAGGTGGGTAAG------CCCACACAGGCCTATTCTACATAAGTGAAAACCAGCTTTAAGGGGCACCTGGTGAAGTGAGGAAGGCCTAGGTCTTGGGAGTGTTTAAACAG-----AAATAACCCTTAGT-AAGAAATGTTAC----AGGAGGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178651930 446 + 178775436 TCCATGCTGCAGGATCATACGGCAA-----------TATCCAAGAAGATATTCTCTTCAGTAGCAAATTCATCATGGTCAGAGGTAA-AGGCACAGTTAGACGCTAACATAGTCGTGTGTAACACCATAGTTAGCTTGCTTGAAACTGACCTATGTCCAGTGCCAATATTTC-CTAGGTTCTTTTAGGATTATCCCTAGTTGATTGCAAATTTGAGAATATGGAATGAAGATAATATGTAC-CATTCACAACTTATGGGAAATATAAACCCACAATATGGTACATTTGTTGTGAAGTCGGTCTGGATCCCATTCAAGGACTCAGAGGTGGGTAAG------CCCACACAGGCCTATTCTACATAAGTGAAAACCAGCTTTAAGGGGCACCTGGTGAAGTGAGGAAGGCCTAGGTCTTGGGAGTGTTTAAACAG-----AAATAACTCTTAGT-AAGAAATGTTAC----AGGAGGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135585662 457 + 135778131 TCCATGCTGCAGGATCATACGGCAGGGAATGAATATGATCCAAGAAGACATTCTCTTCAGTAGCAAATTCATCATGGTCAGAGGTAA-AGGCACGGTTAGAAGCTAACATAGTCGCGTGTAACACCATAGTTAGCTTGCTTGAAACTGACCTATGTCCAGTGCCAATATTTC-CTAGGTTCTTTTAGGATTGTCCCTAGTTGATTGCAAATTTGAGAATATGGAATGAAGATAATATGTAC-CATTCACAACTTACGGGAAATACAAACCCACAATATGGTACATTTGTTGTGAAGTCGGCCTGGATCCCAGTCAAGGACTCAGAGGTGGGTAAG------CCCACACAAGCCTATTCTACATAAGTGAAAACCAGCTTTAAGGGACACCTGGTGAAGTGAGGAAGGCCTAGGTCTTGGGAGTGTTTAAACAG-----AAATAACCCTTAGT-AAGAAATGTTAC----AGGAGGG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190695264 460 - 190850796 TCCATGCTGCAGAGCCATACTTAAGGGAATGTATATAATCCAAGAAGACATTCTCTTTAATAGCAAATTCTTCATGGTCAGAGGTAA-AGGCACAGTTAGAAGCTAAC--AGTCATTTGTAACACCATAATTAGATTGCTTGAAACTGACTTACGTCTTATGCCAATATTTC-CTAGGTTCTTTTAAGATTGTCCCTAGTGGATTGCAAATTTGAGAATATGGAATGAAGATAATATGTAC-CATACACAACTTACGGGAAATGTAAACCAACCATATGGTATATTTGCTGTGATGTCGGTCTGGATCATTTTGAAGGTCTCAAAGGTGTGTAAG------CATACACAAGCCTATTCTACATAAATGAAAACTAACTTTAAAGAGtacctggtgaaggaaggaatgcctagacctcgggagtgtttaaacaga----aactaacactccgt-aagatacgttacagaaaggaggg
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87844770 446 - 129401213 TCTATGTGGCTAGCTTGTATTGCACGGAATGC-CACGGTGAAGAAAGACCCCCACTT-AATGACACGTTCCCCTTTCTAAGCAGTCA-CAACACTATTAG--TCTAGCATAGTATTATG--AAACCATAATTAGGTCGTTTGATGCCAACTTATGGCCAGAGCCAATGTTTTGTTGAATTCTTTTACAAGTGTGCCTACTTTGCTGAAAACTTTAAAATAAAGAATGAAGATAATATGTGT-CACACAGAGATTACAGGAAATATAAGTCAACTGTGTGGTACGTGTGCTG----GTAAGTCTGGATGGCCCTCAAGGACAGACACATAGGTTAG------CTGCCCCAAACCTGAGCTATGGAATTG------AGCTCTAAGG-TCACCTGGCAAGGCTGTGT-TACTTATTCTCTAGAAAGCTTCAAATGAAAGCTAAACAACTCACCCTCGAGAATTATTGC----AGCTGGG
i mm10.chr8                I 1315 I 491
s canFam3.chr16             18141928 445 -  59632846 TCCTTATTGCAGG-------------GAATGCCTGTGGTACAAGGAGCCATTCTCCTTA-TAACAAATTCATCATTCTAGGTGGTAAGATACACAGC------CCAACATAGTCAAGCATAACACCATAATTAGGTAACTTGAAACTGACCTATATCTAGTGCCATAATTTTGTTAGGTTCTTTTAGGATGGTCCCTAGTTCAACGTAAATTTTAAAATATGGA--GGAGATAA---GCACACACACACAATTTGTGGGAAATGTAAACCAACAA-ATGGTAAATTGGCTATGAGTTGTGTTTGGATCTTGTCCAAAGACCCAAAGGTGAACAAGCACACACACACACAAGCTTGACCTACATAATTTAAGACTAAGTTTGAgggttgcctggtgagattgtgaactcccagtccttggaaatgttcaagcagaaactaaataaccctctgt-aagaaatattat----gggaaag
i canFam3.chr16            C 0 C 0

a score=240417.000000
s hg38.chr4_KI270925v1_alt    466735 78 +    555799 gcttaatcttttggtaggaggttgggccacctttgagggtttc-gagtcagtctctgtgactcAGTGACGTTGCGTGTT
s panTro4.chr4             193180005 78 + 193495092 gcttaatcttttggtaggaggttgggccgcctttgagggttct-gagtcagtctctgtgactcagtgatGTTGCTTGTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198258796 78 + 198332218 gcttaatcttttggtaggacgttgggccacctttgagggtttt-gagtcagtctctgtgactcagtgaCGTTGCTTGTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113923553 78 + 115148730 gcctaatcttttggtaggaggctgggccacctttgagggtttc-gagtcagtctctgtgactcAGTGACGTTGCTTGTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183841133 78 + 184069350 gcttaatcttttggtaggagattgggccacctttgagggtttc-gagtcagtctctgtgactcAGTGACATTGCTTGTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189233798 78 + 189454096 GCTTAATCTTTTGGTAGGAGATTGGGCCACCTTTGAGGGTTTC-GAGTCAGTCTCTGTGACTCAGTGACATTGCTTGTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178652376 78 + 178775436 GCTTAATCTTTTGGTAGGAGATTGGGCCACCTTTGAGGGTTTC-GAGTCAGTCTCTGTGACTCAGTGACATTGCTTGTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135586119 78 + 135778131 GCTTAATCTTTTGGTAGGAGATTGGGCCACTTTTGAGGGTTTC-GAGTCAGTCTCTGTGACTCAGTGACATTGCTTGTT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190695724 76 - 190850796 gtt---tcttttggtgggagattgggcaacctttgaggatttcaaagtcagtctccgtgactcGGTGACTTTGCTTATT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18142373 46 -  59632846 ----agtcTC----------------------------ATTTC-CAGTCACCCTCTATGACTCAGTGGCTTAGCTGGTT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87845216 491 - 129401213 I

a score=1011362.000000
s hg38.chr4_KI270925v1_alt    466813 297 +    555799 TGATCAGTTTGTGTAACTGGACACTGCAACTAATGAAGTAAATAACAC--AT-ATAAATTTAACTGAAAATTTTTCCAAGATTCAGATGTCAAATTTTATACTGTATAACTTCTCTTAGACCACTTCTGTTGACATTTCTGTAATCTAAAGACAGTATCTGCCT-AAA--------TCTTCCCCAAAAACAATAATTCTAAAGTTTGATATCCAAAGTTTAAAAAGATGTA---------------------------GC----AATTATTCTCATGCACTCTTA--------ATATTGGAGGGAAattaggaggcttgaaaaatgctcattcctttttggctcggta
s panTro4.chr4             193180083 297 + 193495092 TGATCAGTTTGTGTAACTGGACACTGCAACTAATGAAGTAAATAACAC--AT-ATAAATTTAACTGAAAATTTTTCCAAGATTCAGATGTCAAATTTTATACTGTATAACTTCTCTTAGACCACTTCTGTTGACATTTCTGTAATCTAAAGACAGTATCTGCCT-AAA--------TCTTCCCCCAAAACAATAATTTTAAAGTTTGATATCCAAAGTTTAAAAAGATGTA---------------------------GC----AATTATTCTCATGCACTCTTA--------ATATTGGAGGGAAattaggaggcttgaaaaatgcacatccctttttggctcggta
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198258874 297 + 198332218 TGATCAGTTTGTGTAACTAGACAGTGCAACTAATGAAGTAAATAACAC--AT-ATACATTTAACTGAAAATTTTTCCAAGATTCAGATGTCAAATTTTATACCGTATAACTTCTCTTAGACCACTTCTTTTGACATTTCTATAATCTAAAGACAGTATCTGCCT-AAA--------TCTTCCCCAAAAACAATAATTTTAAAGTTTGATATCCAAAATTTAAAAAGATACA---------------------------GC----AATTATTCTCACACACTCTTA--------ATATTGGAGGGAAattaggaggcttgaaaaatgcttatccctttttggttcggta
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113923631 288 + 115148730 TGATCAGTTTGTGTAACTAGACACTGCGACTAATGAAGTAAGTA--AC--AT-ATAACTTTAACTGAAAATTTTTCCAAGATTCAGATGTCAAATTT-------CATAACTTCTCTCAGACCACTGCTGTTGACATTTCTAAAATCTAAAGACAGTGTCTGCCT-AAA--------TCTTCCCCAAAAACAATAACTTTAAAGTTTGATATCCAAAGTTTAAAAAGATATA---------------------------GC----AAGTATTCTCACGTGTTCTCA--------ATATCAGAGGGAAattaggaggcttgagaaatgctcatccctttttggctcggta
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183841211 297 + 184069350 TGATCAGTTTATGTAACTAGACACTACAACTAATGAAGTAAATAACAC--AT-ATAAATTTAACTGAAAATGTTTCCAAGATTCAGATGTCAAATTTTGTACTGTATAACTTCCCTTAGGCTACTTCTGTTGACATTTCTATAATCTGAAGACAGTATCTGCCT-AAA--------TCTTCCCCAAAAACAATAACTTTAAAGTTTGATATCCAAAGTTGAAAAAGATATA---------------------------GC----AATTATTCCCACGCACACTTA--------ATATTGGAGGGAAattaggaggcttgaaaaatgctcatccctttttggcttggta
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189233876 297 + 189454096 TGATCAGTTTATGTAACTAGACACTACAACTAATGAAGTAAATAACAC--AT-ATAAATTTAACTGAAAATGTTTCCAAGATTCAGATGTCAAATTTTGTACTGTATAACTTCCCTTAGGCTACTTCTGTTGACATTTCTATAATCTGAAGACAGTATCTGCCT-AAA--------TCTTCCCCAAAAACAATAATTTTAAAGTTTGATATCCAAAGTTGAAAAAGACATA---------------------------GC----AATTATTCCCACGCGCACTTA--------ATATTGGAGGGAAattaggaggcttgaaaaatgctcatccctttttggcttggta
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178652454 297 + 178775436 TGATCAGTTTATGTAACTAGACACTACAACTAATGAAGTAAATAACAC--AT-ATAAATTTAACTGAAAATGTTTCCAAGATTCAGATGTCAAATTTTGTACTGTATAACTTCCCTTAGGCTACTTCTGTTGACACTTCTATAATCTGAAGACAGTATCTGCCT-AAA--------TCTTCcccaaaaacaataattttaaagtttgatatCCAAAGTTGAAAAAGATATA---------------------------GC----AATTATTCCCACGTGCACTTA--------ATATTGGAGGGAAATTAGGAGGCTTGAAAAATGCTCATCCCTTTTTGGCTTGGTA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135586197 297 + 135778131 TGATCAGCTTGTGTAACTAGACACTGCAACTAATGAAGTAAATAACAC--AT-ATAAATTTAACTGAAAATGTTTCCAAGATTCAGATGTCAAATTTTATACTGTATAACTTCCCTTAGGCCACTTCTGTTGACACTTCTATAATCTGAAGACAGTATCTGCCT-AAA--------TCTTCCCCAAAAACAATAATTTTAAAGTTTGATATCCAAAGTTGAAAAAGATATA---------------------------GC----AATTATTCCCACACGCACTTA--------ATATTGGAGGGAAattaggaggcttgaaaaatgctcatccctttttggcttggta
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190695800 310 - 190850796 TGACCAGTTTCTGTAACTAGACACTGAAACTAACGAAGTAAATAACTC--AT-GTAAATTTAACTGAAAACATTTTCGAGATTCAGATGTCAAGTTTTATACTGTATAAATTCTCTGAGACCACTCCCATTGACATTTCTATAATCTGAATGCAGTATCTGCCTAAAA--------TCTTCCCCAAAAACAGTAATTTTAATGTTTGATATTGAACATTTAAAAAGATATA---------------------------GCATAAAATTATTCTCATGCATTCTTAATTGAAATATAGTGGAGAGAAattaagagtgttgaaaaatggtcaaccctttttggctcggta
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87845707 307 - 129401213 TGACAAGTTTGTGTGACCACA-ACAATAACTAATAAAGTGGATAACAC--TTGGTAAACCTAACTGCACA--TTTCCAGATTTCAAATGAGAAATTT-AGACTACATAACTGTCCT-AGAATACAGATATTAACATTTCCATGATCTGAATACACTTTCTGCCT-TAAAGGATTTTTTTTCCCCCAGAGCAGTCATTTTAAAGTCTGGTAACCAA--TTTTAAAAGATGTA-----------------------GGATGC----GATTACTCTCATCCACTGCTAATTTAAAAATTGTAGTGGGAAattatgacccttcaaaaat----aatctcttttggctcagtg
i mm10.chr8                I 491 C 0
s canFam3.chr16             18142419 303 -  59632846 TGATTGGTT----TAACTATCCA-TGCAACTAATAAATTGAATAATGCTTAT-GTAAATTTAATTGAAAAATATTTCAAGATTC-------------------------TTTCTCTCAGACCATGTCTATTATTATTTCCATAATCTAAGTACAGGTTCTGCTT-AAA--------TATT-CCAAAAAACAATAGTTTAAAAATTTTATATCCAACATTTAAAAATATGTAGGATGAAAAAAAAAATATATGTAGGATGT----AATCATTCTCATCCATTTCTAGTTGAAATATAATAAAGGGAAATTAAGAGCCTTAAAAAATAgggctgcctggatggctcagta
i canFam3.chr16            C 0 I 2208

a score=281337.000000
s hg38.chr4_KI270925v1_alt    467110 103 +    555799 cctctggtaattcttct--aggaacttattctaaaaatggtc-aaaacatacacaaa-gtttatatataaagatactcaattgggagttatatatactggttaaaa---------------t
s panTro4.chr4             193180380 103 + 193495092 cctctggtaattcttct--aggaacttactctaaaaatggtc-aaaacatacacaaa-gtttatatataaagatactcaattgggagttatttatactggttaaaa---------------t
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198259171 103 + 198332218 cctctggtaattcttct--aggaacttattctaaaaatggtc-aaaacatacacaaa-gtttatatataaagatactcaattgggagttatttatactggttaaaa---------------t
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113923919 108 + 115148730 cctctggtaattcttct--aggaacttattctaaaaatggtc-aaaacatacacaaa-gtttatatataaagatactcaattgggagttatttatactggttaaaatg----------tttt
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183841508 119 + 184069350 cctctggtaattcgtct--aggaacttattctagaaatggtcaaaaacatacacaaa-gtttatatgtaacgatactcaattgggagttatttatgcgggttaaaacattttgttttgtttt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189234173 114 + 189454096 cctctggtaattcgtct--aggaacttattctagaaatggtcaaaaacatacacaaa-gtttatatgtaacgatactcaattgggagttatttatgcgggttaaaaca-----ttttgtttt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178652751 109 + 178775436 CCTCTGGTAATTCGTCT--AGGAACTTATTCTAGAAATGGTCAAAAACATACACAAA-GTTTATATGTAACGATACTCAATTGGGAGTTATTTATGCTGGTTAaaacg----------tttt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135586494 105 + 135778131 cctctggtaattcgtct--aggaacttattctagaaatagtcaaaaacatccacaaa-gtttatatgtaacgatactcaattgggagttatttatgctggttaaaacg--------------
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190696110  96 - 190850796 cctctggtaattcttcc--aggaa------ctagaaatgatcaaaaacatgcacaaaggtttatatacaaagatactcaattgggaattatttatactagctaa------------------
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87846014 104 - 129401213 acttcagagtttgttcttcctgaccttatcctagtactaagcaaaagcacatgccat-gtacatatacaa--atactcaattggaagcaatttgtactttttagaat---------------
i mm10.chr8                C 0 I 592
e canFam3.chr16             18142722 2208 -  59632846 I

a score=673743.000000
s hg38.chr4_KI270925v1_alt    467213 252 +    555799 gttttgttttgttttgagatggagtttcactcttgttgcccagactggagtgcaatggcacgatcttgattcactgcaacctctgcctctgcctcctgggttcaagctattctcccgcctcagcctcccaagtagctgggattacaggcacccaccaccacacctggctaatttttgaat------------------------------ttttagtagagatggggtttcaccatgttggtcaggctggtctcaaactcctgacctcaggtgatccaccca
s panTro4.chr4             193180483 252 + 193495092 gttttgttttgttttgagatggagtttcactcttgttgcccagactggagtgcaatggcacgatcttgattcactgcaacctctgcctctgcctcctgggttcaagctattctcccgcctcagcctcccaagtagctgggattacaggcacctgccaccacacctggctaatttttgaat------------------------------ttttagtagagatggggtttcaccatgttggtcaggctggtctcaaactcctgacctcaggtgatccaccca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198259274 252 + 198332218 gttttgtcctgttttgagatggagtttcactcttgttgcccagactggagtgcaatggcatgatcttttttcactgcaacctccgcctctgcctcctgggttcaagctattctcccgcctcagcctcccaagtagctgggattacaggcacctgccatcacacctggctaatttttgtat------------------------------ttttagtagagacggagtttcaccatgttagtcaggctggtctcaaactcctgacctcaggtgatccaccca
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113924027 252 + 115148730 gttttgttttgttttgagatggagtttcactcttgttgtccagactggagtgcaatggcatgatcttgattcactacaacctccgcttctgcctcctgggttcaagctattctcccacctcagcctcccaagtagctgggactacaggcacccgccaccacacccggctaatttttgtat------------------------------ttttagtagagatggggtttcaccatgctggtcaggctggtctcaaactcctgacctcaggtgatccacccg
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183841627 248 + 184069350 gttttgttttgttttgagatggagtttcactcttgttgcccagactggagagcaatggcaccatcttgattcactgcaacctctgcttccacctcccgggttcaggcgattctcccacctcagcctcccaagtagctgggattaca----------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaactggggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatccacccg
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189234287 252 + 189454096 gttttgttttgttttgagatggagtttcactcttgttgcccagactggagagcaatggcaccatcttgattcactgcaacctctgcttccacctcccgggttcaggcgattctcccacctcagcctcccaagtagctgggattacaggcgcccaccaccacacccagctaatttttgtat------------------------------ttttagtagaactggggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatccacccg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178652860 252 + 178775436 gttttgttttgttttgagatggagtttcactcttgttgcccagactggagagcaatggcaccatcttgattcacagcaacctctgcttccacctcccgggttcaggcgattctcccacctcagcctcccaagtagctgggattacaggtgcccaccaccacacccagctaatttttgtat------------------------------ttttagtagaactggggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatccacccg
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135586599 251 + 135778131 -ttttgttttgttttgagatggagtttcactcttgttgcccagactggagcgcaatggcaccatcttgattcactgcaacctctgcctccacctcccgggttcaggcgattctcccacctcagcctcccaagtagctgggattacaggcacccaccaccacacccagctaatttttgtat------------------------------ttttagtagaactagggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatccacccg
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190696206 241 - 190850796 -ttttgtt---ttttgagacaaagttttgctcttgtttcccaggctgtagtgcagtggtgccatctcggctcactacaacctccgcctcca------gggtttaagcgattctcctgcctcagcctcccaagtaggtgagattacaggcacacgccatgacacccagttaa-ttttgtat------------------------------ttttagtagagaagtgattgcaccatgttggtcaggctggtctcaaactccttacctcaggtgctttgccca
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87846118 592 - 129401213 I
e canFam3.chr16             18142722 2208 -  59632846 I

a score=711163.000000
s hg38.chr4_KI270925v1_alt    467465 345 +    555799 cctcggcctcctaaaattctgggattacaggcaggagccactgcacccagcctaaaattttaaaataaccttaatgaccaaaaataagggattagttaaattatgcacatttatataatgaaataatctgcagcccattaaaaatcatgttttataaaactttattaacaaaaagaaatgctcatgat---ataaattttaagaatatgtctaaaagcaatgtatattgtgagatctcatttttgtttt-----atatttgtataaaaaaatggcatttcctctggctttttctttgtgtacacacacacatacacacagat--------acacacacacacacacacacacacacacaca
s panTro4.chr4             193180735 335 + 193495092 ccttggcctcctaaagttctgggattacaggcaggagccactgcacccagcctaaaattttaaaataaccttaatgaccaaaaataaggaattagttaagttatgcacatttatataatgaaataatctgcagcccattaaaaatcatgttttataaaactttattaacaaaaagaaatgctcatgat---ataaattttaagaatatgtctaaaagcaatgtatattgtgagatctcatttttgtttt-----atatttgtataaaaaaatggcatttcctctggctttttctttgtgtacacacacacatacacacagat------------------acacacacacacacacacaca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198259526 335 + 198332218 cctcggcctcctaaagtgctgggattacaggcaggagccactgcacccagcctaaaattttaaaataaacttaatgaccaaaaataagggattagttaaattatgcacatttatataatgaaataatctgcagcctattaaaagtcatgttttataaaactttatt----aaaagaaatgctcatgatataataaattttaagaatatgtctaaaagcaatgtatattgtgtgatctcatttttatttt-----atatttgtat-aaaaaatgacatttcctctggttttttctttgtgcacacacacacatacacacagat----------------acacacacacacagacacacaca
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113924279 315 + 115148730 cctcggcctcctaaagtgctggcattacaggtgggagccactgcacccaacctaaaattttaaaataacctcaacgaccaaaaataaggga----ttaaattatgcacatttatataatg----aatctgcagcccattaaaaatcatgttttataaaactttattaacaaaaagaaatgctcacgatataataaattttaagaatatgtctaaaagcgatgtatattgtgtgatctcatttttgttttatatcatatttgtataaaaaaatgacatttcctctggctt----tttgtgtacacac----------------------------------acacacacacacacacacaca
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183841875 345 + 184069350 cctcggcctcctgaagtgctgggattacaggcgtgagcaactgcacctggcctaaaattttaaaataacctcaatgaccaaaaataagggattagttaagttatgcacatttatataatgaaataatctacagcc-attaaaaatcctgttttataaaactttgttaacaaaagtaaatgctcatgatataataaatttt---aatatgtctaaaagcaatgtatactatgtgatctcatttttgttttatattatatttgtat-aaaaaatgacatttcctct-actttttctttgtgtacacacacacatacacacagat----------acacacacacacacacacacacacacaca
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189234539 355 + 189454096 cctcggcctcctgaagtgctgggattacaggcgtgagcaactgcacctggcctaaaattttaaaataacctcaatgaccaaaaataagggattagttaagttatgcacatttatataatgaaataatctacagcc-attaaaaatcctgttttataaaactttattaacaaaagtaaatgctcatgatataataaatttt---aatatgtctaaaagcaatgtatactatgtgatctcatttttcttttatattatatttgtat-aaaaaatgacatttcctct-actttttctttgtgtacacacacacatacacacagatacacacacacacacacacacacacacacacacacacaca
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178653112 348 + 178775436 cctcggcctcctgaagtgctgggattacaggcgtgagcaactgcatctggcctaaaattttaaaataacctcaATGACCAAAAATAAGGGATTAGTTAAGTTATGCacatttatataatgaaataatctacagcc-attaaaaatcatgttttataaaactttattaacaaaAGTAAATGCTCatgatataataaattttaagaatatgTCTAAAAGCAATGTATACTATgtgatctcatttttgttttatattatatttgtat-aaaaaatgacatttcctct-actttttctttgtgtacacacacacatacacacagat----------acacacacacacacacacacacacacaca
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135586850 333 + 135778131 cttcggcctcctaaagtgctgggattacaggcgtgagcaactgcacctggcctaaaattttaaaataacctcaatgaccaaaaataagggattagttaagttatgcacatttatataatgaaataatctacagcc-attaaaaagcatgttttataaaactttattaacaaaagtaaatgctcacgatataataaattttaagaatatgtctaaaagcaacgtatactgtgtgatctcatttttgttttatattatatttgtataaaaaaatgacatttcctct-accttttc--tgtgtacacacacacatacacacagat------------------------acacacacacacaca
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87846118 592 - 129401213 I
e canFam3.chr16             18142722 2208 -  59632846 I
e calJac3.chr3             190696447   0 - 190850796 C

a score=405633.000000
s hg38.chr4_KI270925v1_alt    467810 167 +    555799 cacaggctagagaaaatatgccaaaatattagtagtaattgc-t-atctctgaatgatagaattaggcatgattgttcttttattccttatgtttcccagaattttc-caattttctactatgaacaaatacttttgtaatagggaaaaTCATAAGTGTTATTTCTCTTT
s panTro4.chr4             193181070 167 + 193495092 cacaggctagagaaaatatgccaaaatattagtagtaattgc-t-atctctgaatgatagaattaggcatgattgttcttttattcctcatgttttccagaattttc-caattttctactatgaacaaatacttttgtaatagggaaaaTCATAAGTGTTATTTCTCTTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198259861 166 + 198332218 cacaggctagagaaaatatgccaaaatattagtagtaattgc-t-atctctgaatgatagaattaggcatgattgttcttttattcctcatgttttacagaattttc-caactttctactatgaacaaata-ttttgtaatagggaaaaTCATAAATGTTATTTCCCTTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113924594 166 + 115148730 cacaggctagagaaaataggccaaaatattagtagtaattgc-t-gtctctgaatgatagaattaggcatgattgttcttttattcctcatgttttctagaattttc-caattttctactatgaacaaaaaattttgtaatagggaaaaTCATAAGTGTTATTTC-CTTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183842220 167 + 184069350 cacaggctagagaaaatatgccaaaatattagtagcaattgc-t-atctctgaatgatagaattaggcacgattgttcttttattcctcgtgttttccagaattttc-caattttctatgatgaacaaatacttttctaatagggaaaaTCATAAGTGTTATTGCCCTTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189234894 167 + 189454096 cacaggctagagaaaatatgccaaaatattagtagcaattgc-t-atctctgaatgatagaattaggcatgattgttcttttattcctcgtgttttccagaattttc-caattttctatgatgaacaaatacttttctaatagggaaaaTCATAAGTGTTATTGCCTTTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178653460 168 + 178775436 cacaggctagagaaaatatgccaaaatattaGTAGCAATTGC-TAATCTCTGAATGATAGAATTAGGCATGATTGTTCTTTTATTCCTCGTGTTTTCcagaattttc-caattttctatgATGAACAAATACTTTTGTAATAGGGAAAATCATAAGTGTTATTGCCCTTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135587183 167 + 135778131 cacaggctagagaaaatatgccaaaatattagtagtaattgc-t-atctctgaatgatagaattaggcacgattgttcttttattccttgtgttttccagaattttc-caattttctacgatgaacaaatacttttgtaatagggaaaaTCATAAGTGTTATTGCCCTTT
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87846710 137 - 129401213 tacaagttgTATAGTGCCTGAAAAAATGGTAGCAATGATAGTGT-ATCGCCCA--------------------------------CTATATGGTTTCCAACACACTCTCACTCTTCCACAATAAATAAATATCTCCAAAGTAAGAAAAGCCCTGTGTGACACTCCCTTTT
i mm10.chr8                I 592 C 0
e canFam3.chr16             18142722 2208 -  59632846 I
e calJac3.chr3             190696447   0 - 190850796 C

a score=338733.000000
s hg38.chr4_KI270925v1_alt    467977 102 +    555799 TAAAGCTCTTCAAATAAGTTCTTCTGAATTCCATGGCTACCATTTAATTCAATAAACACATTCTGAGGATTAAGTTGGGCC-----------AGTGTTTT------------A------TCATTACTATCA
s panTro4.chr4             193181237 102 + 193495092 TAAAGCTCTTCAAATAAGTTCTTCTGAATTCCATGGCTACCATTTAATTCAATAAACACATTCTGAGGATTAAGTTGGGCC-----------AGTGTTTT------------A------TCATTACTATAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198260027 101 + 198332218 T-AAGTTCTTCAAATAAGTTCTTCTGAATTCTACGGCTACCATTTAATTCAATAAACACATTCTGAGGATTAAGTTGGGCC-----------AGTGTTTC------------A------TCATTACTATCA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113924760 102 + 115148730 TAAAGCTCTTCAAGTAAGTTCTTCTGAATTCCATGGCTACCATTTAATTCAATAAACACATCCTGAGGATTAAGTTGGGCC-----------AGTGTTTT------------A------TCATTACTATCA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183842387 102 + 184069350 TAAAGCTCTTCGAGTAAGTTCTTCTGAATTCCATGGCTACCGTTTAATTCAATAAACACATTCTGAGGATTAAGTTGGGCC-----------AGTGCTTT------------A------TCATTACTATCA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189235061 102 + 189454096 TAAAGCTCTTCGAGTAAGTTCTTCTGAATTCCATGGCTACCGTTTAATTCAATAAACACATTCTGAGGATTAAGTTGGGCC-----------AGTGCTTT------------A------TCATTACTATCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178653628 102 + 178775436 TAAAGCTCTTCGAGTAAGTTCTTCTGAATTCCATGGCTACCGTTTAATTCAATAAACACATTCTGAGGATTAAGTTGGGCC-----------AGTGCTTT------------A------TCATTACTATCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135587350 102 + 135778131 TAAAGCTCTTCAAGTAAGTTCTTCTGAATTCCATGGCTACCGTTTAATTCAATAAACACATTCTGAGGATTAAGTTGGGCC-----------AGTGTTTT------------A------TCATTACTATCA
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87846847 108 - 129401213 CAAGACTCTCCAAATAAGTTCTTCCCAATTCCATGGTCATCCTTTAATTCAGTAAACATACTTTGAGGACTAACTTGGACC-----------AGTACTTC------------AAAACGTTCTTCACTATTA
i mm10.chr8                C 0 I 237
s canFam3.chr16             18144930 125 -  59632846 TAAATCCCTTCAACTAAGCCCTTCTGAATCCCATAGACATCATTCAATTCAACAAACATATTTTGAGGATAAAGTTGAGCTAAATTTTTGAAAGTGTTCTTTTGCCATCTTGA------TCATTACCATCA
i canFam3.chr16            I 2208 C 0
e calJac3.chr3             190696447   0 - 190850796 C

a score=202989.000000
s hg38.chr4_KI270925v1_alt    468079 85 +    555799 AAATAAGAGA-GACTGATGGAGA----CAAAAAACTTCATATGATACACTTTGATGTGTTACataatatataatatttaaatataattat
s panTro4.chr4             193181339 85 + 193495092 AAATAAGAGA-GACTGATGGAGA----CAAAAAACTTCATATGATACACTTTGATGTGTTACataatatataatatttaaatagaattat
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198260128 83 + 198332218 AAATAAGAGA-GAATGATGGAGA----CAAAAAACTTCATATGATACACTTTGATGTGTTACATA--ATACAATGtttaaatataattat
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113924862 78 + 115148730 AAATAAGAGA-GACTGATGGAGA----CAAAAAACTTCATATGATACACTTTGATGTGTT-------ATATAATATTTAAATATAATTAT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183842489 83 + 184069350 AAATAAGAGA-GACTGATGGAGA----TGAAAAACTTCATATGATACACTTTGATGTGCTACATA--ATGtaatatttaaatataattat
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189235163 83 + 189454096 AAATAAGAGA-GACTGATGGAGA----TGAAAAACTTCATATGATACACTTTGATGTGCTACATA--ATGTAATATTTAAATATAATTAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178653730 83 + 178775436 AAATAAGAGA-GActgatggaga----tgaaaaactTCATATGATACACTTTGATGTGCTacata--atgtaatatttaaatataattat
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135587452 81 + 135778131 AAATA--AGA-GACTGATGGAGA----TGAAAAACTTCATATGATACACTTTGATGTGCTACATA--ATGTAATATTTAAATATAATTAT
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             18145055 75 -  59632846 AAATAAGGTACAACTGATGGAGATTTTTAAAAGTTTTTAT-TTATATACTTTG--------------ATAAACTACTTAAATGTAATTAT
i canFam3.chr16            C 0 I 16
e mm10.chr8                 87846955 237 - 129401213 I
e calJac3.chr3             190696447  0 - 190850796 C

a score=709351.000000
s hg38.chr4_KI270925v1_alt    468164 322 +    555799 attattaaacataatataatacttagaataattaaatatataatTATTGCTGAGTTGCTCTGT------------------------TTTattgattgattgattgattg-attgattgagaca-ggtctcactctgttgcccaggctggagtgcagtggcacagtcatggctcactgcagcctcaatctccagggctcaagtgatcctccttcctcagcctcccacgtagctgggactgaagccgtgagccatcatgcctggctaatttttgtacattttgtagagacagggttttgccatgttgcccaggctagtcctgaattcctgggctcaagtgatccacctg
s panTro4.chr4             193181424 315 + 193495092 attattaaacataat---atacttagaataattaaatatataattattGCTGAGTTGTTCTGT------------------------TTT----attgattgattgattg-attgattgagaca-ggtctcactctgttgcccaggctggagtgcagtggcacagtcatgactcactgcagcctcaatctccagggttcaagtgatcctccttcctcagcctcccacgtagctgggactgaagccgtgagccatcacgcctggctaatttttgtacattttgtagagacagggttttgccatgttgcccaggctagtcctgaattcctgggatcaagtgatccacctg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198260211 315 + 198332218 attattaaacata-----atacttagaataattaaatatataattattGCTGAGTTGCTCTGt------------------------ttt----atttatttacttattattttttttgagacagggtctcactctgttgcccaggctggagtgcagtggcacagtcatggctcactgcagcctcaatctccagggttcaagtgatcctccttcctcagcctcccaggtagctgggactgcagccgtgagccaccatgcctggctaatttttgtacattttgtagagacagggttttgccatgttgcccaggctagtcttgaattcctgggctcaagtgatccacctg
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113924940 316 + 115148730 ATTATTAAACATAAT---ATGTTTATAATAATTAAATATATAATTATTGCTGAGTTGCTCTGt------------------------ttt----gtttatttatttattt-attttttgagacagggtctcactctgttgcccaggctggagtgcagtggcacagtcatggctcactgcagcctcagcctccagggttccagtgatcctccttcctcagcctcccaagtagctgggactgcagccatgagccaccacgcctggctaatttttgtacattttgtaaagacagggttttgccatgttttccaagctagtcttgaattcctgggctcaagtgatccacctg
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183842572 318 + 184069350 gttattaaacata-----atacttataataattaaatatataGTTATTGCTGAGTTGCTCTCT------------------------tttagttatttatttatttattt-attttttgagacagggtctcactctgttgcacaggctggagtgcagcggcacaatcacggctcactgcagcctcaatctccagggttcaagtgatcctccttcctcagcctcccaagtagctgggactgcagccatgagccaccacacctggctaattttggtacattttgtagagatagggttttgccatggtgcccaggctagtcctgatttcctgggctcaagtgatccacctg
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189235246 318 + 189454096 ATTATTAAACATA-----ATACTTATAATAATTAAATATATAGTTATTGCTGAGTTGCTCTCT------------------------TTTAGTTAtttatttatttattt-attttttgagacagggtctcactctgttgcacaggctggagtgcagcggcacaatcacggctcactgcagcctcaatctccagggttcaagtgatcctccttcctcagcctcccaagtagctgggactgcagccatgagccaccacacctggctaattttggtacattttgtagagatagggttttgccatggtgcccaggctagtcctgatttcctgggctcaagtgatccacctg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178653813 341 + 178775436 attattaaacata-----atacttataataattaaatatatagttattGCTGAGTtgctctcttttatttatttatttatttatttatttatttatttatttatttattt-attttttgagacagggtctcactctgttgcccaggctggagtgcagcggcacaatcacggctcactgcagcctcaatctccagggttcaagtgatcctccttcctcagcctcccaagtagctgggactgcagccatgagccaccacacctggctaattttggtacaTTTTGT-GAGATAGGGTTTttccatggtgcccaggctagtcctgatttcctgggctcaagtgatccacctg
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135587533 336 + 135778131 ATTATTAAACATA-----ATACTTATAGTAATTAAATACATAGTTATTGCTGAGTTGCTCTTA------tatttatttatttatttatttatttatttatttatttattt-attGtttgagacagggtctcactctgttgcccaggctggagtgcagtggcacaatcacggctcactgcagcctcaatctccagggttcaagtgatcctccttcctcagcctcccaagtagctgggactgcagccatgagccaccacgcccggctaattttggtacattttgtagagacagggtattgccgtggtgcccaggctagccctgaattcctaggctcaagtgatccacctg
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87846955 237 - 129401213 I
e canFam3.chr16             18145130  16 -  59632846 I
e calJac3.chr3             190696447   0 - 190850796 C

a score=152625.000000
s hg38.chr4_KI270925v1_alt    468486 52 +    555799 ccttggcctcccaaagtgctgggattacaggcatgagccaTGACATCAAGGG
s panTro4.chr4             193181739 52 + 193495092 tcttggcctcccaaagtgctgggattacaggcatgagccaTGACATCAAGGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198260526 52 + 198332218 ccttggcctcccaaagtgctgggattacaggcatgagccaTGACCCCGAGGG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113925256 52 + 115148730 ccttggcctcccaaagtgctgggattacagccatgagccaTGACACTGAGGG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183842890 52 + 184069350 ccttggtgtcccaaagtgctggaattacaggcacgagccaTGACACCGAGGG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189235564 52 + 189454096 ccttggtgtcccaaagtgctggaattacaggcatgagccaTGACACCGAGGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178654154 52 + 178775436 ccttggtgtcccaaagtgctggaattacaggcatgagccatgacaccAAGGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135587869 52 + 135778131 ccttggcgtcccaaagtgctggaattacaggcatgagcTGTGACACCGAGGG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190696447 52 - 190850796 ccttggcctcccaaagtgttgggattacaggcaagagccacAACACTGAGGG
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87846955 237 - 129401213 I
e canFam3.chr16             18145130 16 -  59632846 I

a score=257470.000000
s hg38.chr4_KI270925v1_alt    468538 65 +    555799 GCTCTGTTTAATTTATAGTCACAATTTAAAGATTTATACTATGCGATATGTAATAAGGTACTTGT---
s panTro4.chr4             193181791 65 + 193495092 GCTCTGTTTAATTTATATTCACAATTTAAAGATTTATACTATGTGATATGTAATAAGGTACTTGT---
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198260578 65 + 198332218 GCTCTGTTTAATTTATATTCACAATTTAAAGATTTATACTATATGACACGTAATAAGGTACTTGT---
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113925308 64 + 115148730 GCTCTGTTTAATTTATATTCACAATTTAAAGATTTATATTATATGACATGTAAT-AGGTACTTGT---
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183842942 65 + 184069350 GCTCTGTTTAATTTATATTCACAATTTAAATATTTATACTATATGACATGTAATAAGATACTTGT---
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189235616 65 + 189454096 GCTCTGTTTAATTTATATTCACAATTTAAAGATTTATACTATATGACATGTAATAAGATACTTGT---
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178654206 65 + 178775436 GCTCTGTTTAATTTATAATCACAATTTAAAGATTTATACTATATGACATGTAATAAGATACTTGT---
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135587921 65 + 135778131 GCTCTGTTTAATTTATATTCACAATTTAAAGATTTATACTATATGACATGTAATAAGATACTTGT---
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190696499 65 - 190850796 GCTCTGTTTAATTTATATTCACAATGTAAAGATTTATACTATATGACATGTAACAAGATACTCAT---
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87847192 65 - 129401213 GCTCTGTTTAATTTGCACTCACCATTTAGAGACTTATATTATACAATGTATAAAGAGACACTTGT---
i mm10.chr8                I 237 I 386
s canFam3.chr16             18145146 65 -  59632846 GCTCTGTGTAATTTCTATACACTATTTAAAGATTCATACTATACAACAT---AAAAGATACTTGAGGT
i canFam3.chr16            I 16 C 0

a score=932831.000000
s hg38.chr4_KI270925v1_alt    468603 295 +    555799 ATTGTTTCCCATCATATTCTATTCTTT-GTACATAATC-AACGTTCAATATTTCTTAAGGAAAGAAAAAAGGAAGGGAAAGAGTAACGATTAAATGTAT--TCCTTATAAAAATGAGTATAGTTCCCTACTATGCTATTTCTATGAAAAACTTAAATTTGACATC-GCTATTTTAGCATTTGTCCTATTTTTTCAGAATATATCCCACAGAACAAGACC-GAAAAAAA-ATGGTGATTCTCCAAAGGCCACC-AGTGAAGCAGTGAT---GGAAGTTTGTAGATATCACCCCAAAC-ACACTTAGGC
s panTro4.chr4             193181856 295 + 193495092 ATTGTTTCCCATCATATTCTATTCTTT-GTACATAATC-AACGTTCAATATTTCTTAAGGAAAGAAAAAAGGAAGGGAAAGAGTAACGATTAAATGTGT--TCCTTATAAAAATGAGTATAGTTCCCTACTATGCTATTTCTATGAAAAACTTAAATTTGACATC-GCTATTTTAGCATTTGTCCTATTTTTTCAGAATATATCCCACAGAACAAGACC-GAAAAAAA-ATGGTGATTCTCCAAAAGCCACC-AGTGAAGCAGTGAT---GGAAGTTTGTAGATATCACCCCAAAC-ACACTTCGGC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198260643 296 + 198332218 ATTGTTTCCCATCATATTCTATTCTTT-GTACATAATC-AACACTCAGTATTTCTTAAGGAAAGAACAAAGGAAGGGAAAGAGTAACGATTAAATATGT--TCCTTATAAAAATGAGTATAGTTCCCTACTATGCTATTTCTATGAAAAACTTAAATTTGACATC-ACTATTTTAGCATTTGTCCTATTTTTTCAGAATATATTCCACAGAACGAGACCAAAAAAAAA-ATGGTGATTCTCCAAAGGCCACC-AGTGAAGCAGGGAC---GGAAGTTTGTAGATATCACCCCAAAC-ACACTTCGGC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113925372 293 + 115148730 ATTGTTTCCCATCATATTCTATTCTTT-GTACATAATC-AACACTCAATATTTCTTAAGGAAA-AACAAAGGAAGGGAAAGAGTAACAATTAAATGTGT--TCCTTATAAAAATGAGTATAGTTCCCTACTATGCTATTTCTGTGAAAAACTTAAATTTGACATC-ACCATTTTAGCATTTGTCCTATTTTTTCAGAATATATCCCACAGAACAAGACC--GAAAAAA-ATGGTGATTTTCCAAAGGCCACC-AGTGAAGCAGTGAC---AGAAGTTTGTAGATATCACCCCAAAC-ACACTTCGGC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183843007 297 + 184069350 ATTGTTTCCCATCATATTCTATTCTTTGGTACATAATC-AACACTCAATATTTCTTAAGGAAAGAACAAAGGAAGGGAAAGAGTAATGATACAATGTGT--TCCTTATAAAAATGAGTATAGTTCCCTACTATGCTATTTCTATGAAAAACTTAAATTTGACATC-ACTATTTTAGCATTTGTCCTATTTTTGCAGAATATAACCTACAGAACAAGACAGAAAAAAAA-ATGGTGATTTTCCAAAGGCCACC-AGTGAAGCAGTGAT---GGAAGTTTGTAGATATCACCCCAAAC-ACACTTCAGC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189235681 297 + 189454096 ATTGTTTCCCATCATATTCTATTCTTTGGTACATAATC-AACACTCAATATTTCTTAAGGAAAGAACAAAGGAAGGGAAAGAATAATGATACAATGTGT--TCCTTATAAAAATGAGTATAGTTCCCTACTATGCTATTTCTATGAAAAACTTAAATTTGACATC-ACTATTTTAGCATTTGTCCTATTTTTGCAGAATATAACCTACAGAACAAGACAGAAAAAAAA-ATGGTGATTTTCCAAAGGCCACC-AGTGAAGCAGTGAT---GGAAGTTTGTAGATATCACCCCAAAC-ACACTTCAGC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178654271 297 + 178775436 ATTGTTTCCCATCATATTCTATTCTTTGGTACATAATC-AACACTCAATATTTCTtaaggaaagaacaaaggaagggaaagagtaATGATACAATGTAT--TCCTTATAAAAATGAGTATAGTTCCCTACTCtgctatttctatgaaaaacttAAATTTGACATC-ACTATTTTAGCATTTGTCCTATTTTTGCAGAATATAACCTACagaacaagacagaaaaaaaa-atggtgatttTCCAAAGGCCACC-AGTGAAGCAGTGAT---GGAAGTTTGTAGATATCACCCCAAAC-ACACTTCAGC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135587986 296 + 135778131 ATTGTTTCCCATCATATTCTGTTCTCTGGTACATAATC-AACACTCAATATTTCTTAAGGAAAGAACAAAGGAAGGGAAAGAGTAATGATACAATGTGT--TCCTTATAAAAATGAGTATAGTTCCCTACTATGCTATTTCTATGAGAAACTTAAATTTGACATC-ACTATTTTAGCATTTGTCCTATTTTTTCAGAATATAACCTACAGAACAAGACAG-AAAAAAA-ATGGTGATTTTCCAAAGGCCACC-AGTGAAGCAGTGAT---GGAAGTTTGTAGATGTCACCCCAAAC-ACACTTCAGC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190696564 300 - 190850796 ATTGTTTCCCATCATATTCTGTTCTTT-GTACATAATCAAACGTTCAATATTTCTCAAGGAAAGAATAAAGAAAGGGAAAGAGTAACAATTAAATACAT--TCCTTATAAAATTGAGAATAGCTCCCTGCTATGCTATTTATATGAAAACCTTAAATTTGACATCTATTATTTTAGCATCTGTCATATTTTTCCAGAGAATAACACATAGAACAAGACAGAAACAAAATCTGTTGATTTTCCAAAGCCTTCTAAGTGAAGCAGTGAC---AGAAGTCTGTAGATACCATCCCAAAC-ACACCTTGGC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18145211 280 -  59632846 CTTAATTGCCACTGTATACTA------------------AATACTCAATATTTCCTAAGGAAAGAATAAAGAGTGGGAGGAAG----AAGTAAATGTAGTATTTTTATTAAGATGGGTATAA-TCCATCTTACACTATTTCTATGAAAA-CATAGATTTGACTTCTATCATGTCAGCTTATGTCATATTTTTCCAGAATATATTCAATAGAACAAGACA-CAAACTGA-GAAGTGGTTTTCCAAAGCCTCAG-AGTGAAGCAGTGACAGGAGAAGTTCATAGATATGATCTAAAACTATACCTTGGC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87847257 386 - 129401213 I

a score=280209.000000
s hg38.chr4_KI270925v1_alt    468898 92 +    555799 TCCAGGAGGCCACCTCAACAAATCCTGTGTTCAGTTTGGAGATGGAGACTTTCTTCACCATCCTGAC-TTGCTCAGTGC-GACCTTGGGAAAAG
s panTro4.chr4             193182151 92 + 193495092 TCCAGGAGGCCACCTCAACAAATCCTGTGTTCAGTTTGGAGATGGAGACTTTCTTCACCATCCTGAC-TTGCTCAGTGC-AACCTTGGGAAAAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198260939 91 + 198332218 TCCAGGAGGCCACCTCAACAAATCCTGTGTTCAGTTTGGAGATGGAGACTTTCTTCACCAT-TTGAC-TCGCTCAGTGC-GACCTTGGGAAAAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113925665 91 + 115148730 TCCAGGAGGCCACCTCCACAAATCCTGTGTTCAGTTTGGAGATGGAGACTGTCTTCACCAT-CTGAC-TTGCTCAGTGT-GACCTTGGGAAAAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183843304 91 + 184069350 TCCAGGAGG-AGCCTCAACAAATCCCGTGTTCAGTTTGGAGACAGAGACTTTCTTCGCCATCCTGAC-TTGCTCAGTGC-GTCCTTGGGAAAAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189235978 91 + 189454096 TCCAGGAGG-AGCCTCAACAAATCCCGTGTTCAGTTTGGAGACAGAGACTTTCTTCGCCATCCTGAC-TTGCTCAGTGC-GTCCTTGGGAAAAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178654568 91 + 178775436 TCCAGGAGG-AGCCTCAACAAATCCTGTGTTCAGTTTGGAGACAGAGACTTTCCTCGCCATCCTGAC-TTGCTCAGTGC-GTCCTTGGGAAAAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135588282 91 + 135778131 TCCAGGAAG-AGCCTCAACAAATCCTGTGTTCCGTTTGGAGATGGAAACTTTCTTCGCCATCCGGAC-TTGCTCAGTGC-GTCCCTGGGAAAAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190696864 92 - 190850796 TCCAGGAAGCCGCCACAGCAAATCCTGTGTTCGGTTTGGAGATGGAGCCTTTCTTTGCCATCCTGAC-TGGCTCAGTGT-GACCTTGGGGACAG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87847643 86 - 129401213 TCCCAAACACCACCATAAGAAATCCT-------GTTTGCAAAGGGAAATTGTCTTTGGCATCCTGCT-TTGCTCAGAACTAACTTTGGGAACAG
i mm10.chr8                I 386 C 0
s canFam3.chr16             18145491 70 -  59632846 -----------------------TCTGTGCTAGATGTGGAAATGGAGGCATTTCGTGACATCTTGACTTTTCCCAGAAC-CATTTTGAAAGAAG
i canFam3.chr16            C 0 C 0

a score=-575.000000
s hg38.chr4_KI270925v1_alt    468990 2 +    555799 AG-
s panTro4.chr4             193182243 2 + 193495092 AG-
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198261030 2 + 198332218 GG-
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113925756 2 + 115148730 GG-
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190696956 2 - 190850796 GG-
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87847729 1 - 129401213 -G-
i mm10.chr8                C 0 I 1
s canFam3.chr16             18145561 2 -  59632846 -GC
i canFam3.chr16            C 0 C 0
e chlSab2.chr7             135588373 0 + 135778131 C
e papAnu2.chr5             178654659 0 + 178775436 C
e macFas5.chr5             189236069 0 + 189454096 C
e rheMac3.chr5             183843395 0 + 184069350 C

a score=4230.000000
s hg38.chr4_KI270925v1_alt    468992 3 +    555799 AAG
s panTro4.chr4             193182245 3 + 193495092 AAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198261032 3 + 198332218 AAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113925758 3 + 115148730 AAG
i nomLeu3.chr7b            C 0 C 0
s mm10.chr8                 87847731 3 - 129401213 AAG
i mm10.chr8                I 1 C 0
s canFam3.chr16             18145563 3 -  59632846 AAG
i canFam3.chr16            C 0 I 7
e calJac3.chr3             190696958 0 - 190850796 C
e chlSab2.chr7             135588373 0 + 135778131 C
e papAnu2.chr5             178654659 0 + 178775436 C
e macFas5.chr5             189236069 0 + 189454096 C
e rheMac3.chr5             183843395 0 + 184069350 C

a score=1209.000000
s hg38.chr4_KI270925v1_alt    468995 6 +    555799 GATGCA
s panTro4.chr4             193182248 6 + 193495092 GATGCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198261035 6 + 198332218 GCTGCA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113925761 6 + 115148730 GATGCA
i nomLeu3.chr7b            C 0 C 0
s mm10.chr8                 87847734 6 - 129401213 CCCAGG
i mm10.chr8                C 0 C 0
e canFam3.chr16             18145566 7 -  59632846 I
e calJac3.chr3             190696958 0 - 190850796 C
e chlSab2.chr7             135588373 0 + 135778131 C
e papAnu2.chr5             178654659 0 + 178775436 C
e macFas5.chr5             189236069 0 + 189454096 C
e rheMac3.chr5             183843395 0 + 184069350 C

a score=7926.000000
s hg38.chr4_KI270925v1_alt    469001 23 +    555799 GCTGAGCTG-CTGGTCCTGAGGTG
s panTro4.chr4             193182254 23 + 193495092 GCTGAGCTG-CTGGTCCTGAGGTG
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113925767 23 + 115148730 GCTGAGCTG-CTGGTCCTGAGGTG
i nomLeu3.chr7b            C 0 T 32
s mm10.chr8                 87847740 24 - 129401213 TTGGAGGTGCCCAGTTCTGAGGTC
i mm10.chr8                C 0 C 0
e canFam3.chr16             18145566  7 -  59632846 I
e calJac3.chr3             190696958  0 - 190850796 C
e chlSab2.chr7             135588373  0 + 135778131 C
e papAnu2.chr5             178654659  0 + 178775436 C
e macFas5.chr5             189236069  0 + 189454096 C
e rheMac3.chr5             183843395  0 + 184069350 C
e ponAbe2.chr4             198261041  0 + 198332218 C

a score=911.000000
s hg38.chr4_KI270925v1_alt    469024 4 +    555799 CCTC
s panTro4.chr4             193182277 4 + 193495092 CCTC
i panTro4.chr4             C 0 C 0
s mm10.chr8                 87847764 4 - 129401213 TCTC
i mm10.chr8                C 0 I 26
e canFam3.chr16             18145566 7 -  59632846 I
e calJac3.chr3             190696958 0 - 190850796 C
e chlSab2.chr7             135588373 0 + 135778131 C
e papAnu2.chr5             178654659 0 + 178775436 C
e macFas5.chr5             189236069 0 + 189454096 C
e rheMac3.chr5             183843395 0 + 184069350 C
e nomLeu3.chr7b            113925790 32 + 115148730 T
e ponAbe2.chr4             198261041 0 + 198332218 C

a score=182.000000
s hg38.chr4_KI270925v1_alt    469028 2 +    555799 AA
s panTro4.chr4             193182281 2 + 193495092 AA
i panTro4.chr4             C 0 T 38
e mm10.chr8                 87847768 26 - 129401213 I
e canFam3.chr16             18145566 7 -  59632846 I
e calJac3.chr3             190696958 0 - 190850796 C
e chlSab2.chr7             135588373 0 + 135778131 C
e papAnu2.chr5             178654659 0 + 178775436 C
e macFas5.chr5             189236069 0 + 189454096 C
e rheMac3.chr5             183843395 0 + 184069350 C
e nomLeu3.chr7b            113925790 32 + 115148730 T
e ponAbe2.chr4             198261041 0 + 198332218 C

a score=0.000000
s hg38.chr4_KI270925v1_alt    469030 17 +    555799 CTGCCTGGCCACTGCAT
e mm10.chr8                 87847768 26 - 129401213 I
e canFam3.chr16             18145566  7 -  59632846 I
e calJac3.chr3             190696958  0 - 190850796 C
e chlSab2.chr7             135588373  0 + 135778131 C
e papAnu2.chr5             178654659  0 + 178775436 C
e macFas5.chr5             189236069  0 + 189454096 C
e rheMac3.chr5             183843395  0 + 184069350 C
e nomLeu3.chr7b            113925790 32 + 115148730 T
e ponAbe2.chr4             198261041  0 + 198332218 C
e panTro4.chr4             193182283 38 + 193495092 T

a score=600.000000
s hg38.chr4_KI270925v1_alt    469047 2 +    555799 GC
s macFas5.chr5             189236069 2 + 189454096 GC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178654659 2 + 178775436 GC
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87847768 26 - 129401213 I
e canFam3.chr16             18145566 7 -  59632846 I
e calJac3.chr3             190696958 0 - 190850796 C
e chlSab2.chr7             135588373 0 + 135778131 C
e rheMac3.chr5             183843395 0 + 184069350 C
e nomLeu3.chr7b            113925790 32 + 115148730 T
e ponAbe2.chr4             198261041 0 + 198332218 C
e panTro4.chr4             193182283 38 + 193495092 T

a score=46653.000000
s hg38.chr4_KI270925v1_alt    469049 54 +    555799 AAGGATGCGGCTGAGCTGCTGGTCCTGAGGTCCCTCACCTGCCTGGCCACTGCA
s panTro4.chr4             193182245 54 + 193495092 AAGGATGCAGCTGAGCTGCTGGTCCTGAGGTGCCTCAACTGCCTGGCCACTGCA
i panTro4.chr4             T 38 C 0
s nomLeu3.chr7b            113925758 54 + 115148730 AAGGATGCAGCTGAGCTGCTGGTCCTGAGGTGCCTCGCCTGCCTGGCCACTGTA
i nomLeu3.chr7b            T 32 C 0
s macFas5.chr5             189236071 54 + 189454096 AAGGATGCGGCTGAGCTGCTGGTCCTGAGGTCCCTCGTCTGCCTGGCCACTGCA
i macFas5.chr5             C 0 T 56
s papAnu2.chr5             178654661 54 + 178775436 AAGGATGCGGCTGAGCTGCTGGTCCTGAGGTCCCTCGTCTGCCTGGACACTGCA
i papAnu2.chr5             C 0 T 56
e mm10.chr8                 87847768 26 - 129401213 I
e canFam3.chr16             18145566  7 -  59632846 I
e calJac3.chr3             190696958  0 - 190850796 C
e chlSab2.chr7             135588373  0 + 135778131 C
e rheMac3.chr5             183843395  0 + 184069350 C
e ponAbe2.chr4             198261041  0 + 198332218 C

a score=273.000000
s hg38.chr4_KI270925v1_alt    469103 1 +    555799 T
s panTro4.chr4             193182299 1 + 193495092 T
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113925812 1 + 115148730 T
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87847768 26 - 129401213 I
e canFam3.chr16             18145566 7 -  59632846 I
e calJac3.chr3             190696958 0 - 190850796 C
e chlSab2.chr7             135588373 0 + 135778131 C
e papAnu2.chr5             178654715 56 + 178775436 T
e macFas5.chr5             189236125 56 + 189454096 T
e rheMac3.chr5             183843395 0 + 184069350 C
e ponAbe2.chr4             198261041 0 + 198332218 C

a score=1144.000000
s hg38.chr4_KI270925v1_alt    469104 2 +    555799 GC
s panTro4.chr4             193182300 2 + 193495092 GC
i panTro4.chr4             C 0 T 57
s nomLeu3.chr7b            113925813 2 + 115148730 TC
i nomLeu3.chr7b            C 0 T 57
s macFas5.chr5             189236069 2 + 189454096 GC
i macFas5.chr5             T 56 C 0
s papAnu2.chr5             178654659 2 + 178775436 GC
i papAnu2.chr5             T 56 C 0
e mm10.chr8                 87847768 26 - 129401213 I
e canFam3.chr16             18145566 7 -  59632846 I
e calJac3.chr3             190696958 0 - 190850796 C
e chlSab2.chr7             135588373 0 + 135778131 C
e rheMac3.chr5             183843395 0 + 184069350 C
e ponAbe2.chr4             198261041 0 + 198332218 C

a score=46653.000000
s hg38.chr4_KI270925v1_alt    469106 54 +    555799 AAGGATGCGGCTGAGCTGCTGGTCCTGAGGTCCCTCACCTGCCTGGCCACTGCA
s panTro4.chr4             193182245 54 + 193495092 AAGGATGCAGCTGAGCTGCTGGTCCTGAGGTGCCTCAACTGCCTGGCCACTGCA
i panTro4.chr4             T 57 C 0
s nomLeu3.chr7b            113925758 54 + 115148730 AAGGATGCAGCTGAGCTGCTGGTCCTGAGGTGCCTCGCCTGCCTGGCCACTGTA
i nomLeu3.chr7b            T 57 C 0
s macFas5.chr5             189236071 54 + 189454096 AAGGATGCGGCTGAGCTGCTGGTCCTGAGGTCCCTCGTCTGCCTGGCCACTGCA
i macFas5.chr5             C 0 T 56
s papAnu2.chr5             178654661 54 + 178775436 AAGGATGCGGCTGAGCTGCTGGTCCTGAGGTCCCTCGTCTGCCTGGACACTGCA
i papAnu2.chr5             C 0 T 56
e mm10.chr8                 87847768 26 - 129401213 I
e canFam3.chr16             18145566  7 -  59632846 I
e calJac3.chr3             190696958  0 - 190850796 C
e chlSab2.chr7             135588373  0 + 135778131 C
e rheMac3.chr5             183843395  0 + 184069350 C
e ponAbe2.chr4             198261041  0 + 198332218 C

a score=273.000000
s hg38.chr4_KI270925v1_alt    469160 1 +    555799 T
s panTro4.chr4             193182299 1 + 193495092 T
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113925812 1 + 115148730 T
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87847768 26 - 129401213 I
e canFam3.chr16             18145566 7 -  59632846 I
e calJac3.chr3             190696958 0 - 190850796 C
e chlSab2.chr7             135588373 0 + 135778131 C
e papAnu2.chr5             178654715 56 + 178775436 T
e macFas5.chr5             189236125 56 + 189454096 T
e rheMac3.chr5             183843395 0 + 184069350 C
e ponAbe2.chr4             198261041 0 + 198332218 C

a score=1144.000000
s hg38.chr4_KI270925v1_alt    469161 2 +    555799 GC
s panTro4.chr4             193182300 2 + 193495092 GC
i panTro4.chr4             C 0 T 57
s nomLeu3.chr7b            113925813 2 + 115148730 TC
i nomLeu3.chr7b            C 0 T 57
s macFas5.chr5             189236069 2 + 189454096 GC
i macFas5.chr5             T 56 C 0
s papAnu2.chr5             178654659 2 + 178775436 GC
i papAnu2.chr5             T 56 C 0
e mm10.chr8                 87847768 26 - 129401213 I
e canFam3.chr16             18145566 7 -  59632846 I
e calJac3.chr3             190696958 0 - 190850796 C
e chlSab2.chr7             135588373 0 + 135778131 C
e rheMac3.chr5             183843395 0 + 184069350 C
e ponAbe2.chr4             198261041 0 + 198332218 C

a score=46653.000000
s hg38.chr4_KI270925v1_alt    469163 54 +    555799 AAGGATGCGGCTGAGCTGCTGGTCCTGAGGTCCCTCACCTGCCTGGCCACTGCA
s panTro4.chr4             193182245 54 + 193495092 AAGGATGCAGCTGAGCTGCTGGTCCTGAGGTGCCTCAACTGCCTGGCCACTGCA
i panTro4.chr4             T 57 C 0
s nomLeu3.chr7b            113925758 54 + 115148730 AAGGATGCAGCTGAGCTGCTGGTCCTGAGGTGCCTCGCCTGCCTGGCCACTGTA
i nomLeu3.chr7b            T 57 C 0
s macFas5.chr5             189236071 54 + 189454096 AAGGATGCGGCTGAGCTGCTGGTCCTGAGGTCCCTCGTCTGCCTGGCCACTGCA
i macFas5.chr5             C 0 T 56
s papAnu2.chr5             178654661 54 + 178775436 AAGGATGCGGCTGAGCTGCTGGTCCTGAGGTCCCTCGTCTGCCTGGACACTGCA
i papAnu2.chr5             C 0 T 56
e mm10.chr8                 87847768 26 - 129401213 I
e canFam3.chr16             18145566  7 -  59632846 I
e calJac3.chr3             190696958  0 - 190850796 C
e chlSab2.chr7             135588373  0 + 135778131 C
e rheMac3.chr5             183843395  0 + 184069350 C
e ponAbe2.chr4             198261041  0 + 198332218 C

a score=273.000000
s hg38.chr4_KI270925v1_alt    469217 1 +    555799 T
s panTro4.chr4             193182299 1 + 193495092 T
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113925812 1 + 115148730 T
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87847768 26 - 129401213 I
e canFam3.chr16             18145566 7 -  59632846 I
e calJac3.chr3             190696958 0 - 190850796 C
e chlSab2.chr7             135588373 0 + 135778131 C
e papAnu2.chr5             178654715 56 + 178775436 T
e macFas5.chr5             189236125 56 + 189454096 T
e rheMac3.chr5             183843395 0 + 184069350 C
e ponAbe2.chr4             198261041 0 + 198332218 C

a score=1144.000000
s hg38.chr4_KI270925v1_alt    469218 2 +    555799 GC
s panTro4.chr4             193182300 2 + 193495092 GC
i panTro4.chr4             C 0 T 57
s nomLeu3.chr7b            113925813 2 + 115148730 TC
i nomLeu3.chr7b            C 0 T 57
s macFas5.chr5             189236069 2 + 189454096 GC
i macFas5.chr5             T 56 C 0
s papAnu2.chr5             178654659 2 + 178775436 GC
i papAnu2.chr5             T 56 C 0
e mm10.chr8                 87847768 26 - 129401213 I
e canFam3.chr16             18145566 7 -  59632846 I
e calJac3.chr3             190696958 0 - 190850796 C
e chlSab2.chr7             135588373 0 + 135778131 C
e rheMac3.chr5             183843395 0 + 184069350 C
e ponAbe2.chr4             198261041 0 + 198332218 C

a score=46653.000000
s hg38.chr4_KI270925v1_alt    469220 54 +    555799 AAGGATGCGGCTGAGCTGCTGGTCCTGAGGTCCCTCACCTGCCTGGCCACTGCA
s panTro4.chr4             193182245 54 + 193495092 AAGGATGCAGCTGAGCTGCTGGTCCTGAGGTGCCTCAACTGCCTGGCCACTGCA
i panTro4.chr4             T 57 C 0
s nomLeu3.chr7b            113925758 54 + 115148730 AAGGATGCAGCTGAGCTGCTGGTCCTGAGGTGCCTCGCCTGCCTGGCCACTGTA
i nomLeu3.chr7b            T 57 C 0
s macFas5.chr5             189236071 54 + 189454096 AAGGATGCGGCTGAGCTGCTGGTCCTGAGGTCCCTCGTCTGCCTGGCCACTGCA
i macFas5.chr5             C 0 T 56
s papAnu2.chr5             178654661 54 + 178775436 AAGGATGCGGCTGAGCTGCTGGTCCTGAGGTCCCTCGTCTGCCTGGACACTGCA
i papAnu2.chr5             C 0 T 56
e mm10.chr8                 87847768 26 - 129401213 I
e canFam3.chr16             18145566  7 -  59632846 I
e calJac3.chr3             190696958  0 - 190850796 C
e chlSab2.chr7             135588373  0 + 135778131 C
e rheMac3.chr5             183843395  0 + 184069350 C
e ponAbe2.chr4             198261041  0 + 198332218 C

a score=273.000000
s hg38.chr4_KI270925v1_alt    469274 1 +    555799 T
s panTro4.chr4             193182299 1 + 193495092 T
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113925812 1 + 115148730 T
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87847768 26 - 129401213 I
e canFam3.chr16             18145566 7 -  59632846 I
e calJac3.chr3             190696958 0 - 190850796 C
e chlSab2.chr7             135588373 0 + 135778131 C
e papAnu2.chr5             178654715 56 + 178775436 T
e macFas5.chr5             189236125 56 + 189454096 T
e rheMac3.chr5             183843395 0 + 184069350 C
e ponAbe2.chr4             198261041 0 + 198332218 C

a score=1144.000000
s hg38.chr4_KI270925v1_alt    469275 2 +    555799 GC
s panTro4.chr4             193182300 2 + 193495092 GC
i panTro4.chr4             C 0 T 57
s nomLeu3.chr7b            113925813 2 + 115148730 TC
i nomLeu3.chr7b            C 0 T 57
s macFas5.chr5             189236069 2 + 189454096 GC
i macFas5.chr5             T 56 C 0
s papAnu2.chr5             178654659 2 + 178775436 GC
i papAnu2.chr5             T 56 C 0
e mm10.chr8                 87847768 26 - 129401213 I
e canFam3.chr16             18145566 7 -  59632846 I
e calJac3.chr3             190696958 0 - 190850796 C
e chlSab2.chr7             135588373 0 + 135778131 C
e rheMac3.chr5             183843395 0 + 184069350 C
e ponAbe2.chr4             198261041 0 + 198332218 C

a score=46653.000000
s hg38.chr4_KI270925v1_alt    469277 54 +    555799 AAGGATGCGGCTGAGCTGCTGGTCCTGAGGTCCCTCACCTGCCTGGCCACTGCA
s panTro4.chr4             193182245 54 + 193495092 AAGGATGCAGCTGAGCTGCTGGTCCTGAGGTGCCTCAACTGCCTGGCCACTGCA
i panTro4.chr4             T 57 C 0
s nomLeu3.chr7b            113925758 54 + 115148730 AAGGATGCAGCTGAGCTGCTGGTCCTGAGGTGCCTCGCCTGCCTGGCCACTGTA
i nomLeu3.chr7b            T 57 C 0
s macFas5.chr5             189236071 54 + 189454096 AAGGATGCGGCTGAGCTGCTGGTCCTGAGGTCCCTCGTCTGCCTGGCCACTGCA
i macFas5.chr5             C 0 T 56
s papAnu2.chr5             178654661 54 + 178775436 AAGGATGCGGCTGAGCTGCTGGTCCTGAGGTCCCTCGTCTGCCTGGACACTGCA
i papAnu2.chr5             C 0 T 56
e mm10.chr8                 87847768 26 - 129401213 I
e canFam3.chr16             18145566  7 -  59632846 I
e calJac3.chr3             190696958  0 - 190850796 C
e chlSab2.chr7             135588373  0 + 135778131 C
e rheMac3.chr5             183843395  0 + 184069350 C
e ponAbe2.chr4             198261041  0 + 198332218 C

a score=273.000000
s hg38.chr4_KI270925v1_alt    469331 1 +    555799 T
s panTro4.chr4             193182299 1 + 193495092 T
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113925812 1 + 115148730 T
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87847768 26 - 129401213 I
e canFam3.chr16             18145566 7 -  59632846 I
e calJac3.chr3             190696958 0 - 190850796 C
e chlSab2.chr7             135588373 0 + 135778131 C
e papAnu2.chr5             178654715 56 + 178775436 T
e macFas5.chr5             189236125 56 + 189454096 T
e rheMac3.chr5             183843395 0 + 184069350 C
e ponAbe2.chr4             198261041 0 + 198332218 C

a score=31016.000000
s hg38.chr4_KI270925v1_alt    469332 34 +    555799 GCAAGGATGCGGCTGAGCTGCTGGTCCTGAGGTC
s panTro4.chr4             193182300 34 + 193495092 GCAAGGATGCGGCTGAGCTGCTAGTCCTGAGGTC
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113925813 34 + 115148730 TCAAGGATGCGGCTGAGCTGCTGGTTCTGAGGTC
i nomLeu3.chr7b            C 0 T 57
s macFas5.chr5             189236069 34 + 189454096 GCAAGGATGCGGCTGAGCTGCTGGTCCTGAGGTC
i macFas5.chr5             T 56 C 0
s papAnu2.chr5             178654659 34 + 178775436 GCAAGGATGCGGCTGAGCTGCTGGTCCTGAGGTC
i papAnu2.chr5             T 56 C 0
e mm10.chr8                 87847768 26 - 129401213 I
e canFam3.chr16             18145566  7 -  59632846 I
e calJac3.chr3             190696958  0 - 190850796 C
e chlSab2.chr7             135588373  0 + 135778131 C
e rheMac3.chr5             183843395  0 + 184069350 C
e ponAbe2.chr4             198261041  0 + 198332218 C

a score=4320.000000
s hg38.chr4_KI270925v1_alt    469366 6 +    555799 CCTCAC
s panTro4.chr4             193182334 6 + 193495092 CCTCAC
i panTro4.chr4             C 0 T 57
s nomLeu3.chr7b            113925790 6 + 115148730 CCTCGC
i nomLeu3.chr7b            T 57 C 0
s macFas5.chr5             189236103 6 + 189454096 CCTCGT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178654693 6 + 178775436 CCTCGT
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87847768 26 - 129401213 I
e canFam3.chr16             18145566 7 -  59632846 I
e calJac3.chr3             190696958 0 - 190850796 C
e chlSab2.chr7             135588373 0 + 135778131 C
e rheMac3.chr5             183843395 0 + 184069350 C
e ponAbe2.chr4             198261041 0 + 198332218 C

a score=14170.000000
s hg38.chr4_KI270925v1_alt    469372 16 +    555799 CTGCCTGGCCACTGCA
s panTro4.chr4             193182283 16 + 193495092 CTGCCTGGCCACTGCA
i panTro4.chr4             T 57 C 0
s nomLeu3.chr7b            113925796 16 + 115148730 CTGCCTGGCCACTGTA
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189236109 16 + 189454096 CTGCCTGGCCACTGCA
i macFas5.chr5             C 0 T 56
s papAnu2.chr5             178654699 16 + 178775436 CTGCCTGGACACTGCA
i papAnu2.chr5             C 0 T 56
e mm10.chr8                 87847768 26 - 129401213 I
e canFam3.chr16             18145566  7 -  59632846 I
e calJac3.chr3             190696958  0 - 190850796 C
e chlSab2.chr7             135588373  0 + 135778131 C
e rheMac3.chr5             183843395  0 + 184069350 C
e ponAbe2.chr4             198261041  0 + 198332218 C

a score=273.000000
s hg38.chr4_KI270925v1_alt    469388 1 +    555799 T
s panTro4.chr4             193182299 1 + 193495092 T
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113925812 1 + 115148730 T
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87847768 26 - 129401213 I
e canFam3.chr16             18145566 7 -  59632846 I
e calJac3.chr3             190696958 0 - 190850796 C
e chlSab2.chr7             135588373 0 + 135778131 C
e papAnu2.chr5             178654715 56 + 178775436 T
e macFas5.chr5             189236125 56 + 189454096 T
e rheMac3.chr5             183843395 0 + 184069350 C
e ponAbe2.chr4             198261041 0 + 198332218 C

a score=4102.000000
s hg38.chr4_KI270925v1_alt    469389 2 +    555799 GC
s panTro4.chr4             193182300 2 + 193495092 GC
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113925813 2 + 115148730 TC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183843395 2 + 184069350 GC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189236069 2 + 189454096 GC
i macFas5.chr5             T 56 C 0
s papAnu2.chr5             178654659 2 + 178775436 GC
i papAnu2.chr5             T 56 C 0
s chlSab2.chr7             135588373 2 + 135778131 GC
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             18145573 2 -  59632846 GC
i canFam3.chr16            I 7 C 0
e mm10.chr8                 87847768 26 - 129401213 I
e calJac3.chr3             190696958 0 - 190850796 C
e ponAbe2.chr4             198261041 0 + 198332218 C

a score=25322.000000
s hg38.chr4_KI270925v1_alt    469391 9 +    555799 AAGGATGCG
s panTro4.chr4             193182302 9 + 193495092 AAGGATGCG
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113925815 9 + 115148730 AAGGATGCG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183843397 9 + 184069350 AAGGATGCG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189236071 9 + 189454096 AAGGATGCG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178654661 9 + 178775436 AAGGATGCG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135588375 9 + 135778131 AAGGATGCG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190696958 9 - 190850796 AAGAATGTG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18145575 9 -  59632846 AAAAATGTA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87847768 26 - 129401213 I
e ponAbe2.chr4             198261041 0 + 198332218 C

a score=99756.000000
s hg38.chr4_KI270925v1_alt    469400 29 +    555799 GCTGAGCTGCTGGTCCTGAGGTCCCTCAC
s panTro4.chr4             193182311 29 + 193495092 GCTGAGCTGCTAGTCCTGAGGTCCCTCAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198261041 29 + 198332218 GCTGAGCTGCTGGTCCTGAGGTCCCTCGC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113925824 29 + 115148730 GCTGAGCTGCTGGTTCTGAGGTCCCTCAT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183843406 29 + 184069350 GCTGAGCTGCTGGTCCTGAGGTCCCTCGT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189236080 29 + 189454096 GCTGAGCTGCTGGTCCTGAGGTCCCTCGT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178654670 29 + 178775436 GCTGAGCTGCTGGTCCTGAGGTCCCTCGT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135588384 29 + 135778131 GCTGAGCTGCTGGTCCTGAGGTCCCTCGT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190696967 29 - 190850796 GCTTAGCTGCTGGCCCCGAGGTCCCTTGT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18145584 29 -  59632846 GCTGAATCCTTAGTTCTGAGATCTCATGT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87847768 26 - 129401213 I

a score=1933172.000000
s hg38.chr4_KI270925v1_alt    469429 544 +    555799  
s panTro4.chr4             193182340 544 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198261070 544 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113925853 543 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183843435 543 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189236109 543 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178654699 543 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135588413 542 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190696996 638 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87847794 554 - 129401213  
i mm10.chr8                I 26 C 0
s canFam3.chr16             18145613 502 -  59632846  
i canFam3.chr16            C 0 C 0

a score=71010.000000
s hg38.chr4_KI270925v1_alt    469973 39 +    555799 TGATGTACCTGAGCGTCCTGTCTCAGTATGATGTACCTG
s panTro4.chr4             193182884 39 + 193495092 TGATGTACCTGAGCGTCCTGTCTCAGTATGATGTACCTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198261614 14 + 198332218 TGATGTACCTGAGC-------------------------
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113926396 39 + 115148730 TGATGTACCCGAGTGTCCTGTCTCAGTATGATGTACCCG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183843978 39 + 184069350 TGATGTACCTGAGTGTCCTGTCTCAGTATGATGTACCTC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189236652 39 + 189454096 TGATGTACCTGAGCGTCCTGTCTCAGTATGATGTACCTG
i macFas5.chr5             C 0 I 726
s papAnu2.chr5             178655242 39 + 178775436 TGATGTACCTGAGCGTCCTGTCTCAGAATGATATACCTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135588955 39 + 135778131 TGATGTACCTGAGCGTCCTGTCTCAGTATGATGTACCTG
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87848348 14 - 129401213 TGGTTTACCTTAGT-------------------------
i mm10.chr8                C 0 C 0
s canFam3.chr16             18146115 20 -  59632846 TGGTTTACCTAAGTGATCTG-------------------
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190697634  0 - 190850796 C

a score=5239.000000
s hg38.chr4_KI270925v1_alt    470012 4 +    555799 AGTG
s panTro4.chr4             193182923 4 + 193495092 AGTG
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113926435 4 + 115148730 AGCG
i nomLeu3.chr7b            C 0 I 544
s macFas5.chr5             189237417 4 + 189454096 AGTG
i macFas5.chr5             I 726 I 1
s papAnu2.chr5             178655281 4 + 178775436 AGTG
i papAnu2.chr5             C 0 I 1
s chlSab2.chr7             135588994 4 + 135778131 AGCG
i chlSab2.chr7             C 0 I 1
s canFam3.chr16             18146135 4 -  59632846 AATA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87848362 0 - 129401213 C
e calJac3.chr3             190697634 0 - 190850796 C
e rheMac3.chr5             183844017 0 + 184069350 C
e ponAbe2.chr4             198261628 0 + 198332218 C

a score=-1908.000000
s hg38.chr4_KI270925v1_alt    470016 5 +    555799 TTTGT
s panTro4.chr4             193182927 5 + 193495092 TTTGT
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113926983 5 + 115148730 TTTGT
i nomLeu3.chr7b            I 544 C 0
s macFas5.chr5             189237422 4 + 189454096 CCTG-
i macFas5.chr5             I 1 I 1
s papAnu2.chr5             178655286 4 + 178775436 CCTG-
i papAnu2.chr5             I 1 I 304
s chlSab2.chr7             135588999 4 + 135778131 CCTG-
i chlSab2.chr7             I 1 I 57
s canFam3.chr16             18146139 3 -  59632846 TTT--
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87848362 0 - 129401213 C
e calJac3.chr3             190697634 0 - 190850796 C
e rheMac3.chr5             183844017 0 + 184069350 C
e ponAbe2.chr4             198261628 0 + 198332218 C

a score=107529.000000
s hg38.chr4_KI270925v1_alt    470021 63 +    555799 CTCAGTATCATGTACCTGAGTGTCCTGTCTCAGTATGATGTACCTGAGCGTCCTGTCTCAGTC
s panTro4.chr4             193182932 63 + 193495092 CTCAGTATGATGTACCTGAGCGTCCTGTCTCAGTATGATGTACCTGAGCGTCCTGTCTCAGTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198261628 42 + 198332218 ---------------------GTCCTGTCTCAGTATGATGTACCTGAGCGTCCTGTCTCAGTA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113926988 63 + 115148730 CTCAGTATGATGTACCCGAGTGTCCTGTCTCAGTATGATGTACCTGAGCGCCCTGTCTCAGTG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183844017 45 + 184069350 ------------------AGTGTCCTGTCTCAGTATGATGTGCCTGAGTGTCCTGTCTCAGTA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189237427 63 + 189454096 CTCAGTATGATGTACCTCAGTGTCCTGTCTCAGTATGATGTGCCTGAGTGTCCTGTCTCAGTA
i macFas5.chr5             I 1 C 0
s papAnu2.chr5             178655594 63 + 178775436 CTCAGTATGATATACCTGAGTGTCCTGTCTCAGAATGATGTACCTGAGTGTCCTGTCTCAGTA
i papAnu2.chr5             I 304 C 0
s chlSab2.chr7             135589060 63 + 135778131 CTCAGAATGATGTACctgagtgtcctgtctcagaatgatgtacctcagtgtcctgtctCAGTA
i chlSab2.chr7             I 57 C 0
s mm10.chr8                 87848362  4 - 129401213 -----------------------------------------------------------AGTC
i mm10.chr8                C 0 C 0
e canFam3.chr16             18146142  0 -  59632846 C
e calJac3.chr3             190697634  0 - 190850796 C

a score=461509.000000
s hg38.chr4_KI270925v1_alt    470084 128 +    555799 TGATGTACCTGAGTGACCTGAATCTTTAAGAGGCAAGAAGCAACTTAGTATGTGGTTCATGTTTTTAAGGAGAAGGGATGGTTTCTCTCCAGGGCTGACAACAGTTAACAGG----CTGAAGATAACACAGA
s panTro4.chr4             193182995 125 + 193495092 TGATGTACCTGAGTGACCTGAATCTTTAAGAGGCAAGAAGCAACTTAGTATGTGGTTCATGTTTTTAAG---AAGGGATGGTTTCTCTCCAGGGCTGACAACAGTTAACAGG----CTGAAGATAACACAGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198261670 128 + 198332218 TGATGTACCTGAGTGACCCGAATCTTTAAGAGGCAAGAAGCAACTTGGTATGTGGTTCATGTTTTTAAGGAGAAGGGATGGTTTCTCTCCAGGGCTGATAACAGTTAACAGG----CTGAAGATAACACAGA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113927051 128 + 115148730 TGATGTACCTGAGTGACCTGGATCTTTGAGAGGCAAGAAGCAACTTAGTATGTGGTTCATGTTTTTAAGGAGAAGGCACGGTTTCTCTCCAGGGCTGATAACAGTTAACAGA----CTGAAGATAACACAGA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183844062 128 + 184069350 TGATGTGCCTGAGTGACCTGAATCTTTAAGAGGCAAGATACAACTTAGTATGTGGTTCATGTTTTTAAGGAGAACGGATGGTTGCTCTCCAAGGCTGATAACAGTTAACGGG----CTGAAGATAACACAGA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189237490 128 + 189454096 TGATGTGCCTGAGTGACCTGAATCTTTAAGAGGCAAGATACAACTTAGTATGTGGTTCATGTTTTTAAGGAGAACGGATGGTTGCTCTCCAAGGCTGATAACAGTTAACGGG----CTGAAGATAACACAGA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178655657 128 + 178775436 TGATGTACCTGAGTGACCTGAATCTTTAAGAGGCAAGAAACAACTTAGTATGTGGTTCATGTTTTTAAGGAGAACGGATGGTTGCTCTCCAAGGCTGATAACAGTTAACGGG----Ctgaagataacacaga
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135589123 128 + 135778131 TGATGTACCTGAGTGACCTGAATCTTTAAGAGGCAAGAAGCAACTTAGTATGTGGTTCATGTTTTTAAGGAGAATGGATAGTTGCTCTCCAGGGCTGATAACAGTTAACGGG----CTGAAGATAACACAGA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190697634 127 - 190850796 TGATGTACCTGAGTGACCTGAATCTTTAAGAGGCAAGAAGCAACTTAGTATGTAGTTCATGCTTTTAGGGAGACGGGATGGTTTCTAT-CAAGGCTGATAACAGTTAATGGG----CTGAAGATAACAGGAG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87848366 110 - 129401213 -GGAGCACTT------------TCTTGAAGAAGGAAGAAGTGGCTTAGGATGTTGTTTAT-TCTTTAAGTAG---GAATGGTTTCTAT-CAGGGCTGGTAATAGTTGATAGG----ATAAAGATCATGCACA
i mm10.chr8                C 0 I 159
s canFam3.chr16             18146142 109 -  59632846 ----------------------TCTTTAAGAGGCAAGAAGCAAGTTAGTATGGTATTCCTTTTTATAAGAAGAAGGGATGGTTTCTAT-CAGAGCTGATAGTAGTTAATGGGATGAATGAAGATAGCATAGA
i canFam3.chr16            C 0 C 0

a score=841660.000000
s hg38.chr4_KI270925v1_alt    470212 197 +    555799 AAATAGGAAAAGCCGCCCTTCTCCTAAATGTTCCATTAAAAGTGAAAAGCTTCATTGCTA-------------TATGCAATTGGTTTTGAAATCTCCATGACTGGAAGTCAGAAATGTTAGAAGTTAATACACTGTTCGGGGACCAAGTGGACTTCTGATGTTCAGAGGGGATGTTTTCAAGGTGAATCCAAAGCCTATAAACAAACAAA
s panTro4.chr4             193183120 197 + 193495092 AAATAGGAAAAGCCACCCTTCTCCTAAATGTTCCATTAAAAGTGAAAAGCTTCGCTGCCA-------------TATGCAATTGGTTTTGAAATCTCCATGACTGGAAGTCAGAAATGTTAGAAGTTAATACACTGTTCGGGGACCAAGTGGACTTCTGATGTTCAGAGAGGATGTTTTCAAGGTGAATCCAAAGCCTATAAACAAACAAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198261798 197 + 198332218 AAATAGGAAAAGCTGCCCTTCTCCTAAATGTTCCATTAAAAGTGAAAAGCTTCGCTGCTA-------------TATGCAATTGGTTTTGAAATCTCCATGACTGGAAGTCAGAAATGTTAGAAGTTAATACACCATTCAGGGACCAAGTGGATTTCTGATGTTCAGAGAGGATGTTTTCAAGGTGAATCCAAAGCCTATAAACAAACAAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113927179 197 + 115148730 AAATAGGAAAAGCCACCCTTCTCCTAAATGTTCCATTAAAAGTGAAAAGCTTCGCTGCTA-------------TATGCAATTGGTTTTGAAATCTCCATGACTGGAAGTCAGAAATGTTAGAAGTTAATATACCGTTCGGGGACCAAGTGGCCTTCTGATGTTCAGAGAGGATGTTTTCAAAGTGAATTTAAAGCCTATAAACAAACAAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183844190 197 + 184069350 AAATAGGAAAAGCTGCCCTTCTCCTAAATGTTCCATTAAAAGTGAAAAGCTCCGCTGCTG-------------TATGCAATTGGTTTTGAAATCTCCATGCCTGGAAGTCAGAAATGTTAGAAGTTAATATACCGTTCGGGGACCAAGTGGACTTCTGATGTTCAGAGAGGATGTTTTCAAGGTGAATCCAAAGCCTATAAACAAACAAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189237618 197 + 189454096 AAATAGGAAAAGCTGCCCTTCTCCTAAATGTTCCATTAAAAGTGAAAAGCTCCGCTGCTG-------------TATGCAATTGGTTTTGAAATCTCCATGCCTGGAAGTCAGAAATGTTAGAAGTTAATATACCGTTCGGGGACCAAGTGGACTTCTGATGTTCAGAGAGGATGTTTTCAAGGTGAATCCAAAGCCTATAAACAAACAAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178655785 197 + 178775436 aaatagGAAAAGCTGCCCTTCTCCTAAATGTTCCATTAAAAGTGAAAAGCTTCGCTGCTG-------------TATGCAATTGGTTTTGAAATCTCCATGCCTGGAAGTCAGAAATGTTAGAAGTTAATATACCGTTCGGGGACCAAGTGGACTTCTGATGTTCAGAGAGGATGTTTTCAAGGTGAATCCAAAgcctataaacaaacaaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135589251 197 + 135778131 AAATAGAAAAAGCTGCCCTTCTCCTAAATGTTCCATTAAAAGTGAAAAGCTTCGCTGCTG-------------TATGCAATTGGTTTTGAAATCTCCATGACTGGAAGTCAGAAATGTTAGAAGTTAATATACCGTTCGGGGACCAAGTGGACTTCTGATGTTCAGAGAGGATGTTTTCAAGGTGAATCCAAAGCCTATAAACAAACAAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190697761 195 - 190850796 AAATAGGGAAAGCTGCCCTTCTCCTAAATGTTCCATTAAAAGTGAAAA--TCCTCTGCTG-------------TATGCAATTGGTTTTGAAATCTCCATGACTGGAAGTCAGAAATGTTAGAAGTTAATATAGCGTTCAGGGACCAAGTGTACTTCCGATGTTCTGAGAGGATGCTTTCAAGGTGAATCCAAACCCTATAAATAAAGAAA
i calJac3.chr3             C 0 I 303
s mm10.chr8                 87848635 207 - 129401213 agagagaAAACGTTGGTCTTCTCCCGGATACACCATTAAAAGTGAAAAGTCTGGCTGCTAAGCCTGACTGCTCTATGCAATTGGTTTTGAAATCCTCACGACTAGAAGTCAGAAAGAGTGGGAGTTAATTCACCATTCAGGGATAAGGTGCGTGCTGAGTATCCAGA---GATGTTTTCAAGGTGAAACCAACCCACATGAACAAACAAA
i mm10.chr8                I 159 C 0
s canFam3.chr16             18146251 194 -  59632846 AAACACGAAAAGCTGGCCTTCT---GAATGCACCATTAAAAGTGAAAAGCCTCACTGCTA-------------TATGCAATTGGTTTTGAAATTCTCATGACTGGAAGTCAGAAATGTTAGAAGTTAATATACCGTTCAGGGATAAAGTGCACTTCTGATGTTCAGAGAGGATGTTTTCAAGGTGAAACCGAAGCCTATAAACAAACAAA
i canFam3.chr16            C 0 C 0

a score=58334.000000
s hg38.chr4_KI270925v1_alt    470409 24 +    555799 AAAAAACACTCCATCAGCTATATC
s panTro4.chr4             193183317 22 + 193495092 AAAAA-CACTCCATC-GCTATATC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198261995 21 + 198332218 AAA---CACTCCATCAGCTATATC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113927376 22 + 115148730 AAAA--CACTCCATCAGCTATATC
i nomLeu3.chr7b            C 0 I 2246
s rheMac3.chr5             183844387 21 + 184069350 AAA---TGCTCTATCAGCTACATC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189237815 21 + 189454096 AAA---TGCTCTATCAGCTACATC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178655982 21 + 178775436 caa---tgctCTATCAGCTACATC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135589448 21 + 135778131 AAA---TGCTCTATCAGCTACATC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190698259 21 - 190850796 aaa---TGCTACCTCAGCTGTATC
i calJac3.chr3             I 303 C 0
s mm10.chr8                 87848842 20 - 129401213 -AG---AGCTACATCAGCTGTATC
i mm10.chr8                C 0 C 0
s canFam3.chr16             18146445 20 -  59632846 -AA---AGCTACATCAGCTGTATT
i canFam3.chr16            C 0 C 0

a score=3225764.000000
s hg38.chr4_KI270925v1_alt    470433 845 +    555799  
s panTro4.chr4             193183339 843 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198262016 859 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113929644 870 + 115148730  
i nomLeu3.chr7b            I 2246 C 0
s rheMac3.chr5             183844408 829 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189237836 847 + 189454096  
i macFas5.chr5             C 0 I 141
s papAnu2.chr5             178656003 824 + 178775436  
i papAnu2.chr5             C 0 I 290
s chlSab2.chr7             135589469 837 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190698280 864 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87848862 794 - 129401213  
i mm10.chr8                C 0 C 0
s canFam3.chr16             18146465 764 -  59632846  
i canFam3.chr16            C 0 C 0

a score=13323.000000
s hg38.chr4_KI270925v1_alt    471278 3 +    555799 GAA
s panTro4.chr4             193184182 3 + 193495092 GAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198262875 3 + 198332218 GAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113930514 3 + 115148730 GAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183845237 3 + 184069350 GAA
i rheMac3.chr5             C 0 I 141
s macFas5.chr5             189238824 3 + 189454096 GAG
i macFas5.chr5             I 141 C 0
s papAnu2.chr5             178657117 3 + 178775436 Gag
i papAnu2.chr5             I 290 C 0
s chlSab2.chr7             135590306 3 + 135778131 GAA
i chlSab2.chr7             C 0 I 302
s calJac3.chr3             190699144 3 - 190850796 GAA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87849656 3 - 129401213 GAA
i mm10.chr8                C 0 C 0
s canFam3.chr16             18147229 3 -  59632846 GAA
i canFam3.chr16            C 0 C 0

a score=155525.000000
s hg38.chr4_KI270925v1_alt    471281 62 +    555799 GAGCCACAAATCCCAGCATATAGATTCATACTGACCCTCCTTAGCTCACTACTTTTCTAGGC
s panTro4.chr4             193184185 62 + 193495092 GAGCCACAAATCCCAGCGTATAGATTCATACTGACCCTCCTTAGCTCACTACTTTTCTAGGC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198262878 62 + 198332218 GAGCCACAAATCCCAGCATATAGATTCATACTGACCCTCCTTAGCCCACTACTTTTCTAGGT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113930517 62 + 115148730 GAGCCACAAATCCCAGCATATAGATTCATACTGATCCTCCTTAGCTCATTACTTTTCTAGGC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183845381 61 + 184069350 GAGCCACAGCTCCCAGCACAGACATCCACACTGACCCTTCCCAGCCCGCTGCTTTTCTAAG-
i rheMac3.chr5             I 141 C 0
s macFas5.chr5             189238827 61 + 189454096 GAGCCACAGCTCCCAGCACAGACATCCACACTGACCCTGCCCAGCCCGCTGCTTTTCTAAG-
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178657120 61 + 178775436 gagccacagctcccagcacAGAGATCCACACTGACCCTTCCCAGCCCGCTGCTTTTCTAAG-
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190699147 62 - 190850796 GAGCCACAAATCCCAGCATATAGATTCATACTGACCCTCCTTAGGTCACTACTTTTCTAAGT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87849659 61 - 129401213 GAATCAGACATCACAACACACAGATCCCTACAACCCCTCTTTGGCTCTACTCTTTCTAAGG-
i mm10.chr8                C 0 C 0
s canFam3.chr16             18147232 62 -  59632846 AATCCACAAATCACAGCATATAGATACACATTGTCCCTTTGAAGCTTACCACTATTCTAAGT
i canFam3.chr16            C 0 C 0
e chlSab2.chr7             135590309 302 + 135778131 I

a score=1079360.000000
s hg38.chr4_KI270925v1_alt    471343 324 +    555799 TGTGGGTCCCTACCACAAAAATAGTTGGTAGACATCAGTTTCCTCCTCTTGAGAACAGTAGAAACTCTTTTAGCTGACTTTCTCTGAGGCCAGCTCCCCCAGTTAGCCAA--GCT-CCCACTTCCT-CTGCAAAGCATGCTGAATAATG--CT-GCTTCTGGGTCCCAAGCACCCCAGGATACGTGCTCCCCT----CTCCCCTCCCAGGTGCTGTTTGGGTACCATGAGTCAG---------------------------------------------------------TACCAAGCCCATTTAGGACAGTTGCCATCGTAATTATC-----TAAAGAACTATTACTGAAACTCGAGTAAGAGTGCACAAAGAAATTTATTGTTTCCTATTCATT
s panTro4.chr4             193184247 324 + 193495092 TGTGGGTCCCTACCACAGAAATAGTTGGTAGACATCAGTTTCCTCCTCTTGAGAAcagtagaaactcttttagctgactttctctgaagccagctcccccagttagccaa--gct-cccacttcct-ctgcaaagcatgctgaataatg--ct-gcttctgggtcccaagcaccccaggatacgtgctcccct----ctcccctcccaggtgctgtttgggtaccatgagtcag---------------------------------------------------------taccaagcccatttaggacagttgccatcgtaattacc-----taaagaactattactgaaactcgagtaagggtgcacagagaaatttactgtttcctattcatt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198262940 353 + 198332218 TGTGGGTCTCTACCACAGAAATAGTTGGTAGACATCAGTTTCCTCCTCTTGAGAAcagtagaaactcttttagctgactttctctgaagtcaactcccccagttagccaa--gct-cccacttcct-ctgcaaagcatgttgaataatg--ct-gtttctggatcccaagcaccccaggatacgtgctcccct----ctcccctcccagttgctgtttgggtaccacgagtcagttta--c--------------------------tgtaccatgtaccatgcgtcagtttaccaagcccatttacgacagttgccatcataattatc-----taaagaactattactgaaactcaagtaagagtgcacaaagaaatttattgtttcctattcatt
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113930579 353 + 115148730 TGTGGGTCCCTACCACAGAAATAGTTGGTAGACATGAGCTTCCTCCTCTTGAGAACAGTAGAAACTCTTTTAGCTGACTTTCTCTGAAGCCAACTCCCCCAGTTAGCCAA--GCT-CCCACTTCCT-CTGCAAAGCATGCTGAATAATG--CT-TCTTCTGGGTCCCAAGCACCCCAGGATACCTGCTCCCCT----CTCCCCTCCCAGGTGCTGTTTGGGTACCACGAGTCAGTTTA--C--------------------------TGTACCATGCACCATGCATCAGTttaccaagcccatttacaacagttgccatcgtaattatc-----taaagaactattactgaaactcgagtaagagtgcacaagtaaatttattgtttcctattcatt
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183845442 382 + 184069350 TGTGGGCCCCTACCACAGAAACAGTTGGTGGCCATCAGCTTCCTCCTGCTGAGTAcagtagaaact-ttttagctgactttctctgaagccatctcccccatttagccaa--gct-cccacttcct-ctgcaaagcatgctgaataatg--ct-gcttctggatcccaagcaccctaggacacctgctccctt----ctcccctcccaggtgctgtttgggtaccacgagtcagtcca--ctgtaccatgtacatgtacatggtacatgtaccatgta-cctgcgtcagtttaccaagcccatttatgccagttgccattgtaatcatccaaagtaaagaactattactgaaacaggagtgagagtgcacaaagaaatttattgtttcctattcatt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189238888 356 + 189454096 TGTGGGCCCCTACCACAGAAACAGTTGGTGGCCATCAGCTTCCTCCTGCTGAGTAcggtagaaact-ttttagctgactttctctgaagccatctcccccatttagccaa--gct-cccacttcct-ctgcaaagcatgctgaataatg--ct-gcttctggatcccaagcaccctaggacacctgctccctt----ctcccctcccaggtgctgtttgggtaccacgagtcagtcca--c--------------------------tgtaccatgta-cctgcgtcagtttaccaagcccatttatgccagttgccattgtaatcatccaaagtaaagaactattactgaaacaggagtgagagtgcacaaagaaatttattgtttcctattcatt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178657181 357 + 178775436 TGTGGGCCCCTACCACAGAAACAGTTGGTGGCCATCAGCTTCCTCCTGCTGAGTACAGTAGAAACT-TTTTAGCTGACTTTCTCTGAAGCCATCTCCCCCAGTTAGCCAA--GCT-CCCACTTCCT-CTGCAAAGCATGCTGAATAATG--CT-GCTTCTGCATCCCAAGCACCCTAGGACACctgctccctt----ctcccctcccaggTGCTGTTTGGGTACCACGAGTCAGTCCA--C--------------------------TGTACCATGTACCCTGCGTCAGTTTACCAAGCCCATTTATGCCAGTTGCCATTGTAATCATCCAAAGTAAAGAACTATTACTGAAACAGGAGTGAGAGTGCACAAATAAATTTACTGTTTCCTATTCATT
i papAnu2.chr5             C 0 I 331
s chlSab2.chr7             135590611 357 + 135778131 TGTGGGCCCCTACCACAGAAACAGTTGGTGGACATCAGCTTCCTCCTGCTGAGTAcagtagaaact-ttttagctgactttctctgaagccatctcccctagttagccaa--gct-cccacttcct-ctgcaaagcatgctgaataatg--ct-gcttctggatcccaagcaccctaggacacctgctccctt----ctcccctcccaggtgctgtttgggtaccacgagtcagtcca--c--------------------------tgtaccatgtaccctgcgtcagtttaccacgcccatttatgccagttgccattgtaatcatccaaagtaaagaactattactgaaactggagtaagagtgcacaaagaaatttattgtttcctgttcatt
i chlSab2.chr7             I 302 C 0
s calJac3.chr3             190699209 350 - 190850796 TGTGGTTCCCTACCATAGAAATAGTTGGCAGACCTCAGCTTCCTCCTCTT----Acagtagaaactctttcagctgactttctctgaagccacctcccccagttaaccaa--tctccccacttcct-ctgcaaagcatgctgaataatg--cT-GCTTCTGGATCCCAAGCACCCCAGGATATCTGTTCCCCT----CT-GCATTCAAGGCACTGTTTGGGTGCCATGAGTCAGTTTA--C--------------------------TGTACCAGGTACCATGCATCAGTTTACAAAGCCCATGTATGCCTGTTGCAATCGTAATTATCTTAAGTAACGAACTATCCCTGAAACTGG----AGAATGCACAAAGAAATTCATTGTTTTCTATTCATT
i calJac3.chr3             C 0 I 1
s mm10.chr8                 87849720 344 - 129401213 TATGGGTCCATAGTGAAGGCACACACAATAGAAACCAGTCCCCTCCACATAAATACA-TCACAGCTCTCTGAACTGACTTTGGTTTGGTCCGGTCCCCGGAACTTACCACT-GCT-CTCAATCACTCCCATCAGGCACGCTAGAAAACAATCC-ACTTCTGGATGTGGAACACActagtatgtcgttcccccttctcctcccttcctgggtgctgttctgggaccaaaacttcatccgatt--------------------------tgtac---------------------ccaagcctatttgtgctagctcagattgtaattgcctaaattaaggaactattattgaaatcagtg-aggagtgcaaaaagagaattattg-ttcctattttta
i mm10.chr8                C 0 I 2
s canFam3.chr16             18147294 327 -  59632846 TGTGGATCC--ATCACCAAGACAGGTGATAAATACCAGCTTCATCCTCTTAAATAcaacagaacctcttttaagtggct-----tgaatccaattcccttgattaaccaatgtcc-tccatttcct-ctgtaaaacatgctgatcaatg--ccAATTTCTGGTTTCAGAACACTCTGGTATGCCTATTCCCTT----CTCCTATCCCAAATACTGTTGGGTTACCATGAGCCCACTGAGTT--------------------------TGTAC---------------------CCAAACCC-TTTGTGCTAGTTGCAGTTAT-ACTACCTAAATTTAGGAATTATTGTTGAAATTAATA-AGgagtgtaaaaagaaaattattgttt-ctatt----
i canFam3.chr16            C 0 C 0

a score=835459.000000
s hg38.chr4_KI270925v1_alt    471667 231 +    555799 AAAAAACCGAAGTGATTATTTTGAAATAGCTCAG-AAGGGTGAGTT-CCTATTAAAAATAGTTACaaaattacgtaaaactccataagggttttgccttcaggacactctgcaagtatctttaaattctcactccatttgaaagaaatggataatgcattagagttgtgctttctggaaggaagacaattaggattacaatcagccatcccaccatgacagaaaaggccttgg
s panTro4.chr4             193184571 232 + 193495092 aaaaaaccgaagtgattattttgaaatagctcagtaggggtgagtt-cctattaaaaatagttacaaaattacataaaactccataagggttttgccttcaggacgctctgcaagtatctttaaattctcactccatttgaaagaaatggataatgcattagagttgtgctttctggaaggaagacaattaggattacaatcagccatcccaccatgacagaaaaggccttgg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198263293 232 + 198332218 aaaaaactgaagtgattattttgaaatagctcagtaggggtgagtt-cctattaaaaacagttataaaattaCATAAAACTCCATAAGGGTTTTGCCTTCAGGATGCTCTACAAGTATCTTTAAATTCTCACTCCATTTGAAAGAAatggataatgcattagagttgtgctttctggaaggaagacaattaggattacaatcagccaacccaccatgacagaaaaggccttgg
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113930932 232 + 115148730 aaaaaactgaagtgattattttgaaatagctcagtaggggtgagtt-cctattaaaaatagttataaaattaCATAAAACTCCATAAGGTTTCTGTCTTCAGGATGCTCTGCAGGTATCTTTAAATTCTCACTCCATTTGAAAGAAatggacaatgcattagagttgtgctttctggaaggaagacaattaggattacaatcagccaactcaccatgacagaaacggcctttg
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183845824 231 + 184069350 aaaaaactgaagtgattattttgaaatagctcagta-aagtgagtt-cctattaaaaatagttttaaaattacataaaactccatactgtttctgccttccagatgctctgcaagtatcattaaattctcactccatttgaaagaaacggataatgcgtgagagcggtgctttctggaaggaagacaattaggattacaatcagccaacccaccatgacagaaaaggccttgg
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189239244 231 + 189454096 aaaaaactgaagtgattattttgaaatagctcagta-aagtgagtt-cctattaaaaatagttttaaaattacataaaactccatactgtttctgtcttccagatgctctgcaagtatcattaaattctcactccatttgaaagaaacggataatgcatgagagcggtgctttctggaaggaagacaattaggattacaatcagccaacccaccatgacagaaaaggccttgg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178657869 232 + 178775436 aaaaaactgaagtgaTTATTTTGAAATAGCTCAGAAGGGGTGAGTT-CCtattaaaaatagttataaaatgacataaaactcCACACGGTTTCTGCCTTCTGGATGCTCTGCAAGTACCTTTAAATTCTCACTCCATTTGAAAGAAACGGATAATGCACGAGAGCGGTGCTTTCTGGAAGGAAGACAATTAGGATTACAATCAGCCAACCCACCATGACAGAAAAGGCCTTGG
i papAnu2.chr5             I 331 C 0
s chlSab2.chr7             135590968 232 + 135778131 aaaaaactgaagtgattattctgaaatagctcagaaggggtgagtt-cctattaaaaatagttataaaatgacataaaactccataaggtttctgccttccggatgctctgcaagtatctttaaattctcactccatttgaaagaaacggataatgcatgagagctgtgctttctggaaggaagacaattaggattacaatcagtcaacccaccatgacagaaaaggccttgg
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190699560 227 - 190850796 AAAGAACTGAGGTGATTATTTTGAAATAGCTTAGTGGGGGTGAGTT-CCTTTTAAAAATAGTTATAAAAT---GCaaaactccataaggtttccgccttcaggacgctctgcaagtgtc--tacattcttgctccattggaaagaaatggatgtcgcattagagttgttctttctggaaggaagacaattaggattacagtcagccaaccaaccatggaagaaacggccttgg
i calJac3.chr3             I 1 C 0
s mm10.chr8                 87850066 208 - 129401213 aaaaaatacaaatggttgttttaaaacaactacatcgggttgagcc-acATT-----------------TTACTCGAAGCCCCATTAAGAGCCTGCCTTTGGAAGGCTCTGCAAGTATTTTTGAGTCCTCACTCCATGTGAAAGTAAGGAATAGTTCATTAGAGTGGTTCTTCCTGTAAGAAAGAGAACTAAGATTATA-------AGTCAACTATTTTTTAAAAGACCTTAG
i mm10.chr8                I 2 I 67
s canFam3.chr16             18147621 229 -  59632846 -aaaaactggggtgactgttttggaatagctgaatacagatgagctactTTTTTAGCATAGTTATaaaattagataaaactccatagggattctgcgttcaggttgctctgtaagtatctttaagttctcaccccattttaaagaaagaaatactacatg---gtggtactttctagaataaagacagtcaagattccaaccagccaactgacaattaaagaaaaggccttgg
i canFam3.chr16            C 0 C 0

a score=1509.000000
s hg38.chr4_KI270925v1_alt    471898 3 +    555799 -ctc
s panTro4.chr4             193184803 3 + 193495092 -ctc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198263525 3 + 198332218 -atc
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113931164 3 + 115148730 -ccc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183846055 3 + 184069350 -atc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189239475 3 + 189454096 -atc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178658101 3 + 178775436 -ATC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135591200 3 + 135778131 -ATC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190699787 3 - 190850796 -atc
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18147850 3 -  59632846 ggt-
i canFam3.chr16            C 0 I 250
e mm10.chr8                 87850274 67 - 129401213 I

a score=491871.000000
s hg38.chr4_KI270925v1_alt    471901 167 +    555799 catgtgaaaagttagcaacaatctattgtatgtttctaatgagctggaagagacgacttgagatgttcctaacacatagaaatgataaatattcaaggtggtggatgctctaaatacccagacttgaccattgcacattccatgcatgtagcaaaatgtcccaggtg
s panTro4.chr4             193184806 167 + 193495092 catgtgaaaagttagcaacaatctattgtatgtttctaaagagctggaagagacgacttgagatgttcccaacacatagaaatgataaatagtcaaggtggtggatgctctaaatacccagacttgaccattgcacattccatgcatgtagcaaaatgtcccaggtg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198263528 167 + 198332218 catgtgaaaagttagcaacaatctattgtatgtttctaaagagctggaagagaggacttgagatgttcccaacacatggaaatgataaatattcaaggtggtggacgctctaaatacccagacttgaccatcgcacattccatgcatgtagcaaaatgtcccaggtg
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113931167 165 + 115148730 catgtg--aagttagcaacaatctattgtatgtttctaaagagctggaagagagggcttgagatgttcccaacacatagaaatgataaatagtcaaggtggtggatgctctaaatacccagacttgaccattgcacattctatgcatgtagcaaaatgtcccaggta
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183846058 165 + 184069350 cccgtgaaaagttagcaac--tctattgtatgtttctaaagagctagaagagaggacttgagatgttccaaacacatagaaatgataaacattcaaggtggtggatgctctaaacacccaggcttgaccatcgcacattccatgcatgtagcaaaatgtcccaggtg
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189239478 165 + 189454096 cccgtgaaaagttagcaac--tctattgtatgtttctaaagagctagaagagaggacttgagatgttccaaacacatagaaatgataaacattcaaggtggtggatgctctaaacacccaggcttgaccatcgcacattccatgcatgtagcaaaatgtcccaggtg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178658104 165 + 178775436 CCCGTGAAAAGTTAGCAAC--TCTATTGTATGTTTCTAaagagctagaagagaggacttgagaTGTtccaaacacatagaaatgataaacattCAAGGTGGTGGATGCTCTAAACACCCAGACTTGACCATTGCACATTCCATGCATGTAGCAAAATGTCCCAggtg
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135591203 165 + 135778131 CCCGTGAAAagttagcaac--tctattgtatgtttctaaagagctagaagagaggacttgagatgtttccaacacatagaaatgataaacattcaaggtggtggatgctctaaacacccagacttgaccatcgcacattccatgcatgtagtaaaatgtcccaggtg
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190699790 167 - 190850796 tatgtgaaaaggtagcaacaatgtactgtatatttctaaacatctagaagagaggacttgaaatgttcccaatacatagaaatgataaatattcaaggtgatggatgccctaaataccctgacttgaccattgcacgttctatgcatgtagcaaaatgtcccatgta
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87850274  67 - 129401213 I
e canFam3.chr16             18147853 250 -  59632846 I

a score=88552.000000
s hg38.chr4_KI270925v1_alt    472068 33 +    555799 ccccataaatacgtacaaatgtta---catattaat
s panTro4.chr4             193184973 33 + 193495092 ccccataaatacgtacaaatgtta---catattaat
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198263695 33 + 198332218 ccccataaatacgtacaaatgtta---catattaat
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113931332 29 + 115148730 ccccacaaa----tacaaatgtta---catattaat
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183846223 33 + 184069350 ccccataaatgcgtacaaacttta---tatattaat
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189239643 33 + 189454096 ccccataaatgtgtacaaacttta---tatattaat
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178658269 33 + 178775436 ccccataaatatgtacaaacttta---tatattaat
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135591368 33 + 135778131 ccccataaatatgtacaaacttta---tatattaat
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190699957 33 - 190850796 ccccatacatatgtacaaatatta---tatattaat
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87850341 32 - 129401213 caccacaaa----aaCAAAGATGACTTTAGATTGAC
i mm10.chr8                I 67 C 0
e canFam3.chr16             18147853 250 -  59632846 I

a score=507081.000000
s hg38.chr4_KI270925v1_alt    472101 189 +    555799 ttaaaagattgg---caaaccaatatatgtgtacacttttaaagttcaaataatggatgtgtataataggtatttaCATGCataaatatgtatgcctata--tttatatatatat------acataCACACACTAGCACCTACATTTTACGTATCAAGTGAC-------TGT----TGATTAATCAACAAAT----AATCCTAATCTTGTCAATC
s panTro4.chr4             193185006 189 + 193495092 ttaaaagattgg---caaaccaacatatgtgtacacttttaaagttcaaataatggatgtgtataataggtatttaCATGCATAAATATGTAGGCCTATA--TTTATATATATAT------ACATACACACACTAGCACCTACATTTTACGTATCAAGTGAC-------TGT----TGATTAATCAACAAAT----AATCCTAATCTTGTCAATC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198263728 191 + 198332218 ttaaaagattga---caaaccgatatatgtgtacacttttaaagttcaaataaTAGATGCGTATAATAGGTATTTACATGCATAAATAGGTATGCCTATATTTTTATATATATAT------ACATACACACACTAGCACCTACACTTTACATATCAAGTGAC-------TGT----TGATTAATCAACAAAT----AATCCTAATCTTGTCAATC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113931361 195 + 115148730 ttaaaagattgg---caaaccaatatatgtgtacacttttaaagttcaaataatagatgtatataataggtatttaCATGCataaatatgtatgcctata--tttatatatatatatatacacataCACACACTAGCACCTACATTTTACATATCAAGTGAC-------TGT----TGATTAATCAACAAAT----AATCCTAATCTTGTCATTC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183846256 184 + 184069350 taaaaag--------caaagcaatatctgtgtacacttttaaagttcaaataataaatgtgtataataggtatttatATGCATAAATATATATGCCTGTA--TTTACATATATAT------ACATACACACACTAGCACCTACATTTTACATATCATGTGAC-------TGT----TGATTAATCAACAAAT----AATCCAAATCTTGTCAATC
i rheMac3.chr5             C 0 I 308
s macFas5.chr5             189239676 184 + 189454096 taaaaag--------caaagcaatatctgtgtacacttttaaagttcaaataataaatgtgtataataggtatttatATGCataaatatatatgcctgta--tttacatatatat------acataCACACACTAGCACCTACATTTTACATATCATGTGAC-------TGT----TGATTAATCAACAAAT----AATCCGAATCTTGTCAATC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178658302 184 + 178775436 taaaaag--------caaagcaataTCTGTGTACACTTTTAAAGTTCAAATAATAAATGTGGataataggtatttatatgcataaatatatacgcctgta--tttacacatatat------atatacacacattagcacctacattttacatatCACATGAC-------TGT----TGATTAATCAACAAAT----AATCCGAATCTTGTCAATC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135591401 136 + 135778131 taaaaag--------caaaGCAATATCTGTGTACACTTTC--------------------------------------------------TATGCCTATA--TTTACATATATAT----ACACATACACACACTAGCACCTACATTTTACGCATCACGTGAC-------TGT----TGATTAATCAACGAAT----AATCCGAATCTTGTCAATC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190699990 187 - 190850796 taaaaagattgg---caaaccaatatacatgtacacttctaaagttcgaataaTAGATGTGTATAACAGGTATTTAGATGCATAAATATGAATGCCTATA--TTTCTACATAC--------ACACACACAAACTAGCAAATACATTTTACCTAACAAGTGAC-------TGT----TGATTAATCAACAAAT----AATCCTAATCTCATCAACT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87850373 156 - 129401213 ATAAAAAATTAATATCAAAGAAAACCGTGTGTGCATATTT-AAGTTCAAATAAAACATGCGCATA-------------------------------TGta--tttatatata-at------ttattcacaa---aaaatatacattttaaatCTCAAATAAT-------TATGTCCTGGTTAGCTTCTTAAA----TGTCTCATTGTTTTC----
i mm10.chr8                C 0 C 0
s canFam3.chr16             18148103 167 -  59632846 tcaaaagactgg---caa----atatatatgtataccttttaagttcaaataatatttatatatggcaggtatttatATGCATAAA------------TA--TGTATATGGAGAT------AGATAC--------------ACATTCCAAATGTCAAATAACTTGACTATAT----TGGTTAATCAATAAATGATCAATCCTAATCTAATCA---
i canFam3.chr16            I 250 C 0

a score=3276.000000
s hg38.chr4_KI270925v1_alt    472290 1 +    555799 A
s panTro4.chr4             193185195 1 + 193495092 A
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198263919 1 + 198332218 A
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113931556 1 + 115148730 A
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183846748 1 + 184069350 a
i rheMac3.chr5             I 308 C 0
s macFas5.chr5             189239860 1 + 189454096 A
i macFas5.chr5             C 0 I 308
s papAnu2.chr5             178658486 1 + 178775436 A
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135591537 1 + 135778131 A
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190700177 1 - 190850796 A
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87850529 0 - 129401213 C
e canFam3.chr16             18148270 0 -  59632846 C

a score=1574234.000000
s hg38.chr4_KI270925v1_alt    472291 418 +    555799 AGATAACTTTTGCACTA----TTTCATTATTTTCCTAATTAGTATTCTCCAATTACTAGTGAAGAAGCAAGTCTGTCGTTTCTGACTTT-CTTTCTTTCAAGTGTCTCT----GTCATTGGCCCATGCAGATTTCACTTGGGCTGTGAACTGAGGTTTTCAG------------------------------------------------CCCTCACTGGAGCCAGATGGCAGAAAGATTGTTGGTAGGGCTCTAAGCCAGGCAGAAGGCA-CCCTGCTCTGAGGCACAGCTTTGTTTAATACAACAGCTCCCCTGTGCCCAACACTCATACTGCCCCAGGAAGTCATGCCAAAGCCCAATCCTGCCAACATTCATGATGCAGAGAAGGAAGCCACAGACTAATCCAACTGGACCAAGCACCCA---TCTCTCCTTCACTGACT-AAAGCAAATCAAGGGCCAACTGTAACATTCAAAAC
s panTro4.chr4             193185196 422 + 193495092 AGATAACTTTTGCACTA----TTTCATTATTTTCGTAATTAGTATTCTCCAATTACTAGTGAAGAAGCAAGTCTGTCGTTTCTGACTTT-CTTTATTTCAAGTGTCTCTAACTGTCATTGGCCCATGCAGATTTCACTTGGGCTGTGAACTGAGGTTTTCAG------------------------------------------------CCCTCACTGGAGCCAGATGGCAGAAAGATTGTTGGTAGGGCTCTAAGCCAGGCAGAAGGCA-CCCTGCTCTGAGGCACAGCTTTGTTTAATACAACAGCTCCCCTGTGCCCAACACTCATACTGCCCCAGGAAGTCATGCCAAAGCCCAATCCTGCCAACATTCATGATGCAGAGAAGGAAGCCACAGACTAATCCAACTGGACCAAGCACCCA---TCTCTCCTTCACTGACT-AAAGCAAATCAAGGGCCAACTGTAACATTCAAAAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198263920 425 + 198332218 AGATAACTTTTGTACTA----TTTCATTATTTTCCTAATTAGTATTCTCCAATTACTAGTGAAGAAGCAAGTCTATGGTTTCTGACTTT-CTTTCTTTCAAGTGTCTCTAACCGTCATTGGCCCATGCAGATTTCACTTGAGCTGTGAACTGAGGTTTTCAG------------------------------------------------CCCTCACTGGAGCCAGATGGCAGAAAGATTGTTGGTGGGGCTCTAAGCCAGGCAGAAGGCA-CCCTGCTCTGGGGCACAGCTTTGTTTAATACAACAGCTCCCCTGTGCCCAACATTCATACTGCCCCAGGAAGTCATGCCAAAGCCCAATCCTGCCAACATTCATGATGCAGAGAAAGAAGCCACAGCCTAATCCAACTGGACCAAGCACCCATAGTCTCTCCTTCACTGACT-ACAGCAAAGCAAGGGCCAACTGGAACATTCAAAAC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113931557 425 + 115148730 AGATAACTTTTGCACTA----TTTTATTATTTTCCTAATTAGCATTCTCCAGTTACTAGTCAAGAAGCAAGTCTGTGGTTTCTGACTTTCCTTTCATTTAAGTGTCTCTAACTGTCATTGGCCCGTGCAGATTTCACTTGGGCTGTGAACTGAGGTTTTCAG------------------------------------------------CCCTCACTGGAGCCAGATGGCAGAGAGATTGTTGCTGGGGCTCTAAGCCAGGCAGAGGGCA-CCCTGCTCAGGGGCACAGCTTTGTTT-ATATGACAGCTCCCCTATGCCCAACACTCATACTGCCCCAGGAAGTCATGCCAAAGCCCAATGCTGCCAACATTCATGATGCAGAGAAGGAAGCCACAGCCTAATCCAACTGGACCAAGCAACCATAATCTCTCCTTCAATGACT-AAAGCAAATCAAGGGCCAACTGTAACATTCCAAAC
i nomLeu3.chr7b            C 0 I 596
s rheMac3.chr5             183846749 427 + 184069350 aGATAACTTTTGCACTA----TTTTATTATTTTCCTAATTAGTATTCTCCAATTACTAGTGAAGAAGCAAGTCTGTGGTTTCTGACTTTCCTTTCATTCAAGTGTCTCTAACTGTCATCGGCCCACGCAGATTTCACTTGGGCTGGGAACTGAGGTTTTCAG------------------------------------------------CCCTCACTGGAGCCAGATGGCAGGGAGACTGTTGGTGAGGCTCTGAGCCAGGCAGAAGGCGGCCCTGCTACGGGGCACAGCTTTGTTTAATACAACAGCTCCCCTCTGCCCAACACTCATACTGCCCCAGGAAGTCATGCCAAAGTCCAATCCTGCCAACATTCATGATGCAGAGAAAGAAGCCACAGCCTAATCCAACTGGACCAAGCATCCGTAATCTCTCCTTCACTGACT-AAAGCAAGTCAAGGGCCAACTGTAACATTCAAAAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189240169 427 + 189454096 AGATAACTTTTGCACTA----TTTTATTATTTTCCTAATTAGTATTCTCCAATTACTAGTGAAGAAGCAAGTCTGTGGTTTCTGACTTTCCTTTCATTCAAGTGTCTCTAACTGTCATCGGCCCACGCAGATTTCACTTGGGCTGGGAACTGAGGTTTTCAG------------------------------------------------CCCTCACTGGAGCCAGATGGCAGGGAGACTGTTGGTGAGGCTCTGAGCCAGGCAGAAGGCGGCCCTGCTACGGGGCACAGCTTTGTTTAATACAACAGCTCCCCTCTGCCCAACACTCATACTGCCCCAGGAAGTCATGCCAAAGTCCAATCCTGCCAACATTCATGATGCAGAGAAAGAAGCCACAGCCTAATCCAACTGGACCAAGCATCCGTAATCTCTCCTTCACTGACT-AAAGCAAGTCAAGGGCCAACTGTAACATTCAAAAC
i macFas5.chr5             I 308 C 0
s papAnu2.chr5             178658487 427 + 178775436 AGATAACTTTTgcacca----ttttattattttcctaattagTATTCTCCAATTACTAGTGAAGAAGCAAGTCTGTGGTTTCTGACTTTCCTTTCATTCAAGTGTCTCTAACTGTCATCGGCCCACGCAGATTTCACTTGGGCTGGGAACTGAGGTTTTCAG------------------------------------------------CCCTCACTGGAGCCAGATGGCAGGGAGACTGTTGGTGAGGCTCTGAGCCAGGCAGAAGGCGGCCCTGCTATGGGGCACAGCTTTGTTTAATACAACAGCTCCCCTGTGCCCAACACTCATACTGCCCCAGGAAGTCATGCCAAAGTCCAATCCTGCCAACATTCATGATGCAGAGAAAGAAGCCACAGCCTAATCCAACTGGACCAAGCATCCGTAATCTCTCCTTCACTGACT-AAAGCAAGTCAAGGGCCAACTGTAACATTCAAAAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135591538 423 + 135778131 AGATAACTTTTGCACTA----TTTTATTATTTTCCTAATTAGTATTCTCCAATTACTAGTGAAGAAGCAAGTCTGTGGTTTCTGACTTTCCTTTCATTCAAGTGTCT----CTGTCATCGGCCCATGCAGATTTCACTTGGGCTGGGAACTGAGGTTTTCAG------------------------------------------------CCCTCACTGGAGCCAGATGGCAGGGAGACTGTTGGTGGGGCTCTGAGCCAGGCAGAAGGCAGCCCTGCTGTGGGGCACAGCTTTGTTTAATACAACAGCTCCCCTGTGCCCAACACTCATACTGCCCCAGGAAGTCATGCCAAAGTCCAATCCTGCCAACATTCATGATGCAGAGAAAGAAGCCACAGCCTAATCCAACTGGACCAAGCATCCGTAATCTCTCCTTCACTGACT-AAAGCAAGTCAAGGGCCAACTGTAACATTCAAAAC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190700178 427 - 190850796 CGATATCTTCTGCACTA----TTTTATTATTTTCCTAATTATTATTCTCCAGTTACTGGTGGGGAAGCAAGTCAGTGGTTTCTGACTCTCCTTTCATTCAAGTGTCTCCAACTGTCATTGGCCCGTGCATATTTCGCTTGGGCTGTGGACTGAGGTTTTCAG------------------------------------------------CCCTCACTGCAGCCAGATGGCAGAGAGATTGTCGGTGGGGCTCTGAGCCAGGCAGAAGGCAGCCCAACCATGGGGCACAGCTTTGTTTAATATGACAGCTCCCCTGTGCCCAA-ACTCATACTGCCCCAGGAAGTCGTGCCAAAGCCCAATCCTGCCAACATACTTGATGCAGAGAAAGAAGCCACAGCCTAATCCAACTGCACCAAACACCTATAATCTCTTCTTCATCCACTCAAAGCAAATCAAGGGCCAACTGTAACATTCAAAAC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87850529 461 - 129401213 ---TAAATTTAATATTACCATTTTTGTTCATTTCCTACTTGGTAT--TCAAATTACCAGTGAAAGAGCAGGTTTGTGGTTTCTGACTTTGCTTCCACTCAATTATCACAAATGGTCAGTGGCCCTCGGAGATCTTACCCCAGGTACGGGATGGGGTTATCAGTT--------CtctctctctctatctatctatctatctttctttctttctttcACTGGAGCCAGATGGCACAGAGTGGCTTCTTGGGCAGCTGAGCCAGCCAGAAAGAAACTCTGCTACCAGG-ACCACCGTGTGT-AGACAACAGCTCCC--AAGCTCAGCGTTCAGCCTGCTGTGGTAAGGAGAGCCAAGG-CCAAGTGTGCCAGGATCCTCACTGCAGGGAAAGTTGCCCCAGCCCCTTCCAGTCTAACCAAACACCTCTAACTTCCCCTTCACTAGCT-CAAAGCTATCAAGGCCCAGCTGCAACACTCCAAAC
i mm10.chr8                C 0 C 0
s canFam3.chr16             18148270 438 -  59632846 -GGTAATTTCTGAAATA----TTTTATTG-TTCCTTGATTCCTATTCTCCAA--ACTGGTTAGAGGACAGTTCTGT--TTTCTGACTTCCTTTCCTTTCAAGGGTCACAAACTGCTAATGGCTCATGCTGATCTCAACTGGGCTATGAAGTGAGGGCTTCAGGCAACAGAAGCACACTCC------------------------------TCTTCCCTGGAGCCAGATGGCAGGGAGACTTTCCATGGGGCCCTAAGCCAGACAGAAGGCAGCCCTGCCACAGGGTGAAGCTTCATTTAATACAGCAACTCCCCTTTGCTCAACACTCACACTGCCCTGGCAAGTTAAGCCAAAGCCCAATCACACCAGGTTTC-TGCTGCAGGGAAAGAAGTCACAGCACATTCCAACTGGACCAAACACCCATAATCTCCCCTTCATTGACT-CAAAGCAATCAAGGGCCAACTGTAACATTCATAAC
i canFam3.chr16            C 0 C 0

a score=3979258.000000
s hg38.chr4_KI270925v1_alt    472709 1109 +    555799  
s panTro4.chr4             193185618 1119 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198264345 1110 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113932578 1108 + 115148730  
i nomLeu3.chr7b            I 596 C 0
s rheMac3.chr5             183847176 1105 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189240596 1105 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178658914 1107 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135591961 1109 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190700605 1084 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87850990 1051 - 129401213  
i mm10.chr8                C 0 I 149
s canFam3.chr16             18148708 1060 -  59632846  
i canFam3.chr16            C 0 C 0

a score=860466.000000
s hg38.chr4_KI270925v1_alt    473818 333 +    555799 ---GGTTAAAC-----AAG----------CTCTCCAAGACT-GGAATTTAAA------AGGACA----------TGGCATAAATTCTGTGGTGAG-TTGAGACCTCTAGGTATCA----AGTCTCAGCAAAGTCAGGTGTCCTTCTCATTGCCTCCCAGGTGGAGATTCAAGAATGAACATGTTggctgggcacggtggctcatgcctgtaatcccagcactctgggaggctgagatgggtagatcacctgaggtcaggagttccagaccagcctggtcaacatggtgaaaccccatctctactaaaaatacaaaaattc-actgagtgtggtgggg-gcagcacctgtaatcccagctacccgggaggct--------------------------gagt
s panTro4.chr4             193186737 319 + 193495092 ---GGTTAAAC----CAAG----------CTCTCCAAGACT-GGAATTTAAA------AGGACA----------TGGCATAAATTCTGTGGTGAG-TTGAGACCTCTAGGTATCC----A------------TCAGGTCTCCTTCTCATTGCCTCCCAGGTGGAGATTCAAGAATGAACATGTTggctgggcacagtggctcatgcctgtaatcccagcactctgggaggctgaggtgggtagatcacctgaggtcaggagttccagaccagcctggtcaacatggtgaaaccccatctctactaaaaatacaaaaattc-actgagtgtggtgggg-gca---cctgtaatcccagctacccgggaggct--------------------------gagt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198265455 331 + 198332218 ---GGTTAAAC----AAAG----------TTCTCCAAGACT-GGAATTTAAA------AGGACA----------CTGCATAAATTCTGTGGTGAG-TTGAGACCTTTAGATATCA----AGTCTCAGCAAAGTCAAGTCTCCTTCTCACTGTCTCCCAGGCGGAAATTCAAGAATGAACGTGTTggctgggcacggtggctcatgcctgtaatcccagcactctgggaggctgaggcgggtagatgacctgaggtcaggagttccagaccagcctggtcaacatggtgaaaccccatctctactaaaaatacaaaaattc-actgagtgtggtgggg-gca---cctgtaatcccagctacccaggaggct--------------------------gagt
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113933686 331 + 115148730 ---GGTTAAAC----AAAG----------CTCTCCAAGACT-GGAATTTAAA------AGGACA----------CTGCACAAATTCTGTGGTGAG-TTGAGACCTCTAGGTATCA----AGTCTCAGCAAAGTCAGGTCTCCTTCTCACTGTCTCCCAGGCAGAGATTCAAGAATGAACATGTTggctgggcatggtggctcacgcctgtaatcccagcactctgggaggctgaggctggtggatcacctgaggtcaggagttccagaccagcctggtcaacatggtgaaaccccgtctctactaaaaatataaaaattc-actgagtgtggtgagg-gca---cctgtaatcccagctacacaggaggct--------------------------gagt
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183848281 333 + 184069350 ---GGTTAAAC----AAAA----------CTCTCCAAGACT-GGAATGTAAA------AGGACA----------CTGCGTAAATTCTATGGTGAGTTTGAGACCTCTGGGTATCA----AGTCTTGGCAAAGTCACGTCTCCTTCTCACTGTCTCCCAGGCGGAGATTCAAGAATGAACATGGTggccgggtgtggtggttcacacctgtaatcccagcactttgggaggccgaggcgggtggatcacctgaggtcagcagttcaagaccagcctggtcaatatggtgaaaccccatctctactaaaaataaaaaaattc-gctgagtgtgttggggcatg---cctgtaatcccagctactcgggaggct--------------------------gagt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189241701 333 + 189454096 ---GGTTAAAC----AAAA----------CTCTCCAAGACT-GGAATGTAAA------AGGACA----------CTGCGTAAATTCTATGGTGAGTTTGAGACCTCTGGGTATCA----AGTCTTGGCAAAGTCAGGTCTCCTTCTCACTGTCTCCCAGGCGGAGATTCAAGAATGAACATGGTggccgggtgtggtggttcacacctgtaatcccagcactttgggaggccgaggcgggtggatcacctgaggtcagcagttcaagaccagcctggtcaatatggtgaaaccccatctctactaaaaataaaaaaattc-gctgagtgtggtggggcatg---cctgtaatcccagctactcgggaggct--------------------------gagt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178660021 333 + 178775436 ---GGTTAAAC----AAAA----------CTCTCCAAGACT-GGAATGTAAA------AGGACA----------CTGCGTAAATTCTATGGTGAGTTTGAGACCTCTGGGTATCA----AGTCTCAGCAAAGTCAGGTCTccttctcactgtctcccaggcggAGATTCAAGAATGAACAtggtggccgggtgtggtggctcacacctgtaatcccagcactttgggaggctaaggcgggcggatcacctgagatcagcagttcaagaccagcctggtcaacatggtgaaaccccatctctactaaaaatacaaaaattt-gctgagtgtggtggggcatg---cctgtaatcccagctactcgggaggct--------------------------gagt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135593070 330 + 135778131 ---GGTTAAAC----AAAA------------CTCCAAGACT-GGAATGTAAA------AGGACA----------CTGCGTAAA-TCCATGGTGAGTTTGAGACCTCTGGGTATCA----AGTCTCAGCAAAGTCAGGTCTCCTTCTCACTGTCTCCCAGGCGGAGATTCAAGAATGAACATGGTggccgggtgtggtggctcacacctgtaatcccagcactttgggaggctgaggcgggtggatcacctgaggtcagcagttcaagaccagcctggccaacacggtgaaaccccctctctactaaaactacaaaaattc-gctgagtgtggtggcgcatg---cctgtgatcccagctactcgggaggct--------------------------gagt
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190701689 359 - 190850796 ---GGATAAACAAACAAAA----------CTCTCCAAGGCT-GGAATTTAAA------AGGACA----------C----TAAATTCTATGGTGGT-TTCAGACCTCTGGGTATCA----AGTCTCAGCAAAGTCAGGTCTCCTTCTCACTCTCTCCCAGGCTGGGATTCAAGAATGAATATATTggctgggcgtggtggctcacacctgtaatcccagcactttgggaggctgaggcaggtggatcacctgagtccaggagctcaagaccagcacggtcaacatggtgaaacccaatctctactaaaaacacaaaaatttagctgagtgtggtggcaggcg---cccatgatcccagctacttgggaggctgaggcaccaaaagcatttgaacccgggagg
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18149768 162 -  59632846 AGTCTTTGAAA----AAAAGTAATAGTAACTCCCCAAAACTGGGGATGTAGGAAATGCAGGAAATGTAAATTTCCTACATAAATTGTATAGAGAGTTTGAGACCACTGGGTCTCAGTTCAGTCTCAGCAAAAATAGTTCCCCT-------------------------------------------------------------------------------------------------------------GTTCCGCTGTCC---ACCAG-------------------------------------------------GCTGAG--------------------------------------------------------------------------
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87852041 149 - 129401213 I

a score=2596618.000000
s hg38.chr4_KI270925v1_alt    474151 863 +    555799  
s panTro4.chr4             193187056 860 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198265786 869 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113934017 847 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183848614 845 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189242034 845 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178660354 847 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135593400 845 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190702048 846 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87852190 679 - 129401213  
i mm10.chr8                I 149 C 0
s canFam3.chr16             18149930 712 -  59632846  
i canFam3.chr16            C 0 I 200

a score=4377970.000000
s hg38.chr4_KI270925v1_alt    475014 1104 +    555799  
s panTro4.chr4             193187916 1105 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198266655 1101 + 198332218  
i ponAbe2.chr4             C 0 I 5
s nomLeu3.chr7b            113934864 1095 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183849459 1089 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189242879 1089 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178661201 1089 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135594245 1081 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190702894 1093 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87852869 1060 - 129401213  
i mm10.chr8                C 0 C 0
s canFam3.chr16             18150842 1086 -  59632846  
i canFam3.chr16            I 200 C 0

a score=-1564.000000
s hg38.chr4_KI270925v1_alt    476118 14 +    555799 GCTACTCAAAGAAT-
s panTro4.chr4             193189021 14 + 193495092 GCTACTCAAAGAAT-
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113935959  5 + 115148730 GCGTC----------
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183850548  5 + 184069350 GCCTC----------
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189243968  5 + 189454096 GCCTC----------
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178662290  5 + 178775436 gcctc----------
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135595326  5 + 135778131 GCCTC----------
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190703987  5 - 190850796 GCCTC----------
i calJac3.chr3             C 0 I 1
s mm10.chr8                 87853929  5 - 129401213 ACCTC----------
i mm10.chr8                C 0 I 2
s canFam3.chr16             18151928  6 -  59632846 ACTTC---------A
i canFam3.chr16            C 0 C 0
e ponAbe2.chr4             198267756  5 + 198332218 I

a score=2713587.000000
s hg38.chr4_KI270925v1_alt    476132 708 +    555799  
s panTro4.chr4             193189035 708 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198267761 705 + 198332218  
i ponAbe2.chr4             I 5 C 0
s nomLeu3.chr7b            113935964 702 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183850553 706 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189243973 706 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178662295 706 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135595331 706 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190703993 714 - 190850796  
i calJac3.chr3             I 1 C 0
s mm10.chr8                 87853936 715 - 129401213  
i mm10.chr8                I 2 C 0
s canFam3.chr16             18151934 719 -  59632846  
i canFam3.chr16            C 0 I 571

a score=1915434.000000
s hg38.chr4_KI270925v1_alt    476840 645 +    555799  
s panTro4.chr4             193189743 645 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198268466 645 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113936666 645 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183851259 637 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189244679 639 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178663001 640 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135596037 639 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190704707 636 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87854651 576 - 129401213  
i mm10.chr8                C 0 I 21
e canFam3.chr16             18152653 571 -  59632846 I

a score=33844.000000
s hg38.chr4_KI270925v1_alt    477485 13 +    555799 TGT-CCCTCAGCCT
s panTro4.chr4             193190388 13 + 193495092 TGT-CCCTCAGCCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198269111 13 + 198332218 TGT-CTCTCAGCCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113937311 13 + 115148730 TGT-CCCTCAGCCT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183851896 14 + 184069350 TGTCCCCTCAGCCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189245318 14 + 189454096 TGTCCCCTCAGCCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178663641 14 + 178775436 TGTCCCCTCAGCCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135596676 14 + 135778131 TGTCCCCTCAGCCT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190705343 14 - 190850796 TTCCCCCTCAGCCT
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87855227 21 - 129401213 I
e canFam3.chr16             18152653 571 -  59632846 I

a score=145284.000000
s hg38.chr4_KI270925v1_alt    477498 53 +    555799 CGCCTCCTCTGTGAGATTTCAGCCGGGAGTGGGAGCCACGATGCTCATCCGCT
s panTro4.chr4             193190401 53 + 193495092 CGCCTCCTCTGTGATATTTCAGCCGGGAGTGGGAGCCACGATGCTCTGGCTGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198269124 53 + 198332218 CGACTCCTCTGTGAGATTTCAGCCGGGAGTGGGACCCATGATGCTCATTCGCC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113937324 53 + 115148730 CGACTCCTCTGTGAGATTTCAGCCGGGAGTGGGACCCACGATGCTCATTCGCC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183851910 53 + 184069350 CGACTCCTCTGTGAGATTTCAGCTGGGAACGGAAGCCACGATGCTCATTCACT
i rheMac3.chr5             C 0 I 1
s macFas5.chr5             189245332 53 + 189454096 CGACTCCTCTGTGAGATTTCAGCTGGGAACGGAAGCCACGATGCTCATTCACT
i macFas5.chr5             C 0 I 1
s papAnu2.chr5             178663655 53 + 178775436 CAACTCCTCTGTGAGATTTCAGCTGGGAATGGAAGCCACGATGCTCATTCGCT
i papAnu2.chr5             C 0 I 2
s chlSab2.chr7             135596690 53 + 135778131 CGACTCCTCTGTGAGATTTCAGCTGGGAACGGAAGCCACGATGCTCATTCGCT
i chlSab2.chr7             C 0 I 1
s calJac3.chr3             190705357 48 - 190850796 CGACTCCTTTGTGAGATGTCAGCCTGGAATGGGAGCCACGATGCTCAT-----
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87855248 44 - 129401213 CGACAACTATGGGAGAC-TCAGCCAAAGGGGGCAGCCATGGTACT--------
i mm10.chr8                I 21 C 0
e canFam3.chr16             18152653 571 -  59632846 I

a score=1314.000000
s hg38.chr4_KI270925v1_alt    477551 1 +    555799 G
s panTro4.chr4             193190454 1 + 193495092 G
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198269177 1 + 198332218 G
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113937377 1 + 115148730 A
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183851964 1 + 184069350 G
i rheMac3.chr5             I 1 C 0
s macFas5.chr5             189245386 1 + 189454096 G
i macFas5.chr5             I 1 C 0
s chlSab2.chr7             135596744 1 + 135778131 G
i chlSab2.chr7             I 1 C 0
e mm10.chr8                 87855292 0 - 129401213 C
e canFam3.chr16             18152653 571 -  59632846 I
e calJac3.chr3             190705405 0 - 190850796 C
e papAnu2.chr5             178663708 2 + 178775436 I

a score=22771.000000
s hg38.chr4_KI270925v1_alt    477552 12 +    555799 TCTACCTGCCTC
s panTro4.chr4             193190455 12 + 193495092 TCTACCTGCCTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198269178 12 + 198332218 TCTACCTGCCTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113937378 12 + 115148730 TCTACCTGCCTC
i nomLeu3.chr7b            C 0 I 2
s macFas5.chr5             189245387 12 + 189454096 TCTACCTGCCTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178663710 12 + 178775436 TCTacctgcctc
i papAnu2.chr5             I 2 C 0
s chlSab2.chr7             135596745 12 + 135778131 TCTACCTGCCTC
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87855292  6 - 129401213 -----ATGCCT-
i mm10.chr8                C 0 C 0
e canFam3.chr16             18152653 571 -  59632846 I
e calJac3.chr3             190705405  0 - 190850796 C
e rheMac3.chr5             183851965  0 + 184069350 C

a score=20962.000000
s hg38.chr4_KI270925v1_alt    477564 18 +    555799 TCTCTACCTTACCT-GCTG
s panTro4.chr4             193190467 19 + 193495092 TCTCTCCCTTACCTGGCTG
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113937392 18 + 115148730 TCTCTCCCTTACCT-GCTG
i nomLeu3.chr7b            I 2 C 0
s macFas5.chr5             189245399 18 + 189454096 TCTCTCCCTCACCT-GCTG
i macFas5.chr5             C 0 I 13
s papAnu2.chr5             178663722 18 + 178775436 tctctccctcacct-gCTG
i papAnu2.chr5             C 0 T 32
s chlSab2.chr7             135596757 18 + 135778131 TCTCTCCCTTACCT-GCTG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190705405  7 - 190850796 --------TTGCCT-G---
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87855298 11 - 129401213 -------CTTATCT-GTTT
i mm10.chr8                C 0 C 0
e canFam3.chr16             18152653 571 -  59632846 I
e rheMac3.chr5             183851965  0 + 184069350 C
e ponAbe2.chr4             198269190  0 + 198332218 C

a score=1314.000000
s hg38.chr4_KI270925v1_alt    477582 1 +    555799 C
s panTro4.chr4             193190486 1 + 193495092 C
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113937410 1 + 115148730 C
i nomLeu3.chr7b            C 0 I 59
s macFas5.chr5             189245430 1 + 189454096 C
i macFas5.chr5             I 13 C 0
s papAnu2.chr5             178663708 1 + 178775436 C
i papAnu2.chr5             T 32 C 0
s chlSab2.chr7             135596775 1 + 135778131 C
i chlSab2.chr7             C 0 I 708
s mm10.chr8                 87855309 1 - 129401213 T
i mm10.chr8                C 0 C 0
e canFam3.chr16             18152653 571 -  59632846 I
e calJac3.chr3             190705412 0 - 190850796 C
e rheMac3.chr5             183851965 0 + 184069350 C
e ponAbe2.chr4             198269190 0 + 198332218 C

a score=43086.000000
s hg38.chr4_KI270925v1_alt    477583 28 +    555799 ATCTACCTGCCTCTCTCTCCCTT-ACCAT
s panTro4.chr4             193190487 28 + 193495092 ATCTACCTGCTTCTCTCTCCCTT-ACCAT
i panTro4.chr4             C 0 I 174
s nomLeu3.chr7b            113937470 27 + 115148730 GTCTACCTGCCTCTCTCTCCCTT-ACCT-
i nomLeu3.chr7b            I 59 C 0
s rheMac3.chr5             183851965 26 + 184069350 -TCTACCTGCCTCTCTCTCCCTC-ACCT-
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189245431 27 + 189454096 ATCTACCTGCCTCTCTCTCCCTC-ACCT-
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178663709 27 + 178775436 ATCTacctgcctctctctccctc-acct-
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190705412 27 - 190850796 -TCTACCTGCGTCTCTCTCCCTTAACCT-
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87855310 22 - 129401213 TCCTA------TCTCTCTCCCTTAACCC-
i mm10.chr8                C 0 C 0
e canFam3.chr16             18152653 571 -  59632846 I
e chlSab2.chr7             135596776 708 + 135778131 I
e ponAbe2.chr4             198269190  0 + 198332218 C

a score=18672.000000
s hg38.chr4_KI270925v1_alt    477611 8 +    555799 GCTGCGAT
s panTro4.chr4             193190689 8 + 193495092 gctgcgat
i panTro4.chr4             I 174 C 0
s nomLeu3.chr7b            113937497 8 + 115148730 GCTGCGAT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183851991 8 + 184069350 GCTGTGAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189245458 8 + 189454096 GCTGTGAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178663736 8 + 178775436 gCTGTGAT
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190705439 8 - 190850796 GCTGTGAT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87855332 8 - 129401213 GCTATGAT
i mm10.chr8                C 0 I 6417
e canFam3.chr16             18152653 571 -  59632846 I
e chlSab2.chr7             135596776 708 + 135778131 I
e ponAbe2.chr4             198269190 0 + 198332218 C

a score=10761.000000
s hg38.chr4_KI270925v1_alt    477619  9 +    555799 GC-CTGGCTG
s panTro4.chr4             193190697  9 + 193495092 gc-ctggctg
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113937505  9 + 115148730 GC-CTGGCTG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183851999 10 + 184069350 GCTCTGGCCA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189245466 10 + 189454096 GCTCTGGCCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178663744  9 + 178775436 GC-CTGGCAG
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190705447  9 - 190850796 GC-CTGGCTG
i calJac3.chr3             C 0 I 9
e mm10.chr8                 87855340 6417 - 129401213 I
e canFam3.chr16             18152653 571 -  59632846 I
e chlSab2.chr7             135596776 708 + 135778131 I
e ponAbe2.chr4             198269190  0 + 198332218 C

a score=135592.000000
s hg38.chr4_KI270925v1_alt    477628 136 +    555799 TGTCTACCTGC--CTCTCTCTCCCTTACCTGCTGCGATG-CCTGGCTG---TGTCTACCTGCCTCTCTCT--CCCTTACCTG------------------------------------------------------------CTGCATCTACCTGCTTCTCTCTCCCTTACC-TGCTGCGATG-CCTGGCTGTGTCTACCTGCCTT
s panTro4.chr4             193190706 139 + 193495092 tgtctacctgc--ctctctctcccttacctg-------------gctg---catctacctgcctCTCTCT--CCCTTACCCG---------------------------------------------GCTGCGATGC-TTGTCTGTGTCTACCTGCCTCTCTCTCCCTTACCATGCTGCGATG-CCTGGCTGTGTCTACCTGCCTC
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113937514 199 + 115148730 TGTCTACCTGCCTCTCTCTCTCCCTTACCTGCTGTGATG-CCTGGCTG---TGTCTACCTGCCTCTCTCTCCCCCTTACCTGCTGCGATGCTTGTCTTGTCTACCTGCCTCTCTCTCTCCCCTACCTGCTGCGATGC-TTGTCTGTGTCTACCTACCTCTCTCCCCCTTACC-TGCTGCGATG-CCTGGCTGTGTCTACCTGCCTC
i nomLeu3.chr7b            C 0 I 2
s rheMac3.chr5             183852009 154 + 184069350 CATCTACCTGC--CTCTGTCTCCCTTACCTGCTGCAATA-CCTGGCAGCGTCGTCTACCTGCCTCTCTCT--CCCTCACCTG----------------------------------------------CTGTGATGCTCTGGCCACATCTACCTGCCTCTCTCTCCCTTACC-TGCTGCGATGCCCTGGCCGCGTCTACCTGCCTC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189245476 149 + 189454096 CATCTACCTGC--CTCTGTCTCCCTTACCTGCTGCAATA-CCTGGCAG---CGTCTACCTGCCTCTGTCT--CCCTTACCTG----------------------------------------------CTGCGATGC-CTGGCCACGTCTACCTGCCTCTGTCTCCCTTACC-TGCTGCGATG-CCTGGCCACGTCTACCTGCCTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178663753 148 + 178775436 CGTctacctgc--ctctgtctcccttaCCTGCTGTGATGCCCTGGCCG---TGTCTacctgcctctctct--cccttaCCTG----------------------------------------------CTGTGATGC-CTGGCGGTGTCTacctgcctc--tctccctcacc-TGCTGTGATG-CCTGGCTGCGTCTacctgcctc
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87855340 6417 - 129401213 I
e canFam3.chr16             18152653 571 -  59632846 I
e calJac3.chr3             190705456   9 - 190850796 I
e chlSab2.chr7             135596776 708 + 135778131 I
e ponAbe2.chr4             198269190   0 + 198332218 C

a score=25424.000000
s hg38.chr4_KI270925v1_alt    477764 21 +    555799 TCTCTCCCTTACCCGGCTGCG
s panTro4.chr4             193190845 21 + 193495092 TCTCTCCCTTACCTGGCTGCG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198269190 21 + 198332218 TCTCTCCCTTACCCTGCTGCG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113937715 20 + 115148730 TCTACCCCCTACCT-GCTGCG
i nomLeu3.chr7b            I 2 C 0
s rheMac3.chr5             183852163 20 + 184069350 TCTCTCCCTTACC-TGCTGCG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189245625 21 + 189454096 TCTTCCCCTCACCGGGCTGCG
i macFas5.chr5             C 0 T 46
s papAnu2.chr5             178663901 20 + 178775436 tctctcccttaCC-TGCTGTG
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87855340 6417 - 129401213 I
e canFam3.chr16             18152653 571 -  59632846 I
e calJac3.chr3             190705456  9 - 190850796 I
e chlSab2.chr7             135596776 708 + 135778131 I

a score=58047.000000
s hg38.chr4_KI270925v1_alt    477785 38 +    555799 ATG-CTTGTCTGTGTCTAcctgtctctctctcccttacc
s panTro4.chr4             193190866 38 + 193495092 ATG-CTTGTCTGTGTCTACCTGCCTCTCTCTCCCTTACC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198269211 38 + 198332218 ATG-CCTGGCTGCGTCTACCTGCCTCTCTCTCCCTTACC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113937735 38 + 115148730 ATG-CTTGTCTGTGTctacctgcctctctcccccttacc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183852183 38 + 184069350 ATG-CCTGGCCACGTCTACCTGCCTGTCTTCCCCTCACC
i rheMac3.chr5             C 0 I 1
s macFas5.chr5             189245600 38 + 189454096 ATG-CCTGGCCACGTCTACCTGCCTGTCTTCCCCTCACC
i macFas5.chr5             T 46 I 8
s papAnu2.chr5             178663921 39 + 178775436 ATGCCCTGGCCATGTCTACCTGCCTCTCTTCCCCTCACC
i papAnu2.chr5             C 0 I 1
e mm10.chr8                 87855340 6417 - 129401213 I
e canFam3.chr16             18152653 571 -  59632846 I
e calJac3.chr3             190705456  9 - 190850796 I
e chlSab2.chr7             135596776 708 + 135778131 I

a score=4751.000000
s hg38.chr4_KI270925v1_alt    477823 7 +    555799 tg-ctgca
s panTro4.chr4             193190904 8 + 193495092 CGGCTGCG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198269249 7 + 198332218 TG-CTGTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113937773 7 + 115148730 tg-ctgcg
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183852222 7 + 184069350 GG-CTGCG
i rheMac3.chr5             I 1 C 0
s papAnu2.chr5             178663961 7 + 178775436 GG-CTGCG
i papAnu2.chr5             I 1 C 0
e mm10.chr8                 87855340 6417 - 129401213 I
e canFam3.chr16             18152653 571 -  59632846 I
e calJac3.chr3             190705456 9 - 190850796 I
e chlSab2.chr7             135596776 708 + 135778131 I
e macFas5.chr5             189245638 8 + 189454096 I

a score=32709.000000
s hg38.chr4_KI270925v1_alt    477830 21 +    555799 atgcctggccatgatgtaagg
s panTro4.chr4             193190912 21 + 193495092 ACGCCTGGCCATGATGTAAGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198269256 21 + 198332218 ATGCCTGGCCATGCTGTAAGG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113937780 21 + 115148730 atgcctgcccatgaggtaagg
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183852229 21 + 184069350 ATGCCTgcccatgagggaagg
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189245646 21 + 189454096 ATGCCTGCCCATGAGGGAAGG
i macFas5.chr5             I 8 C 0
s papAnu2.chr5             178663968 21 + 178775436 ATGCCTGCCCATGAGGGAAGG
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87855340 6417 - 129401213 I
e canFam3.chr16             18152653 571 -  59632846 I
e calJac3.chr3             190705456  9 - 190850796 I
e chlSab2.chr7             135596776 708 + 135778131 I

a score=428048.000000
s hg38.chr4_KI270925v1_alt    477851 187 +    555799 gttctccacctcctctgcagcagggaaaggacttccctaagatcggactctggttccctccatcctatgactcacaatacccctctgtgatccaggctggtcacagatatgctaataaagtgaaagaaatttagaaaactcatttccacctctctagcccctggcttttcagcctGAGGTAGATTCC
s panTro4.chr4             193190933 187 + 193495092 GttctccacctcctctgcagcagggaaaggacttccctaagatcggactctggttccctccatcctatgactcacaatacccctctgtgatccaggctggtcatagatatgctaataaagtgaaagaaatttagaaaactcatttccacctctctagcccctggcttttcagcctGAGGTAGATTCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198269277 187 + 198332218 AttctccacctcctctgcagcagggaaaggacttccctaaggttggactctggttccctccatcctattgctcacaatacacctctgtgatccaggctggtcacggatatgctaataaagtgaaagaaatttagaaaactcatttccacctctctagcccctggctttTCAGCTTGAGGCAGACTCC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113937801 187 + 115148730 gttctccacctcctctgcagcagggaaaggactgccctaaggtcggactctggttccctccatcccatggctcacaatacacctctgtgatccaggctggtcacagatatgctaacaaagtgaaagaaatttagaaaactcatttccacctctctagcccctggcttttcggcttgaggtagactcc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183852250 187 + 184069350 gctctccacctcctctgcagcagggaaaggacttccctaaggtcggactgtggctccctccatcccatggctcacaatacaactctgtgatccaggctgatcacagatatgctaagaaagtgaaggaaacttagaaaactcattcccACCCCTCTAGCCCCTCGCTTTTCGGCTTGAGGTAGACTCC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189245667 187 + 189454096 GCTCTCCACCTCCTCTGCAGCAGGGAAAGGACTTCCCTAAGGTCGGACTGTGGCTCCCTCCATCCCATGGCTCACAATACAACTCTGTGATCCAGGCTGATCACAGATATGCTAAGAAAGTGAAGGAAACTTAGAAAACTCATTCCCACCCCTCTAGCCCCTCGCTTTTCGGCTTGAGGTAGACTCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178663989 187 + 178775436 GCTCTCCACCTCCTCTGCAGCAGGGAAAGGACTTCTCTAAGGTCAGACTGTGGCTCCCTCCATCCCATGGCTCACAATACAACTCTGTGATCCAGGCTGATCACAGATATGCTAAGAAAGTGAAGGAAACTTAGAAAACTCATTCCCACCCCTCTAGCCCCTCGCTTTTCGGCTTGAGGTAGACTCC
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190705465 187 - 190850796 GCTCTTTGTCCTCTCTGCAGCAGggaagggccttccctaaggtcagactccggtttcctccatcccatggcttacaatacaactctgtgatccaggtcgaccaaagatatgctaataaagtaaaagaaatttagaaaactcatttctatctctctagcccccggctttTTGACTTAAGATAGACCCC
i calJac3.chr3             I 9 C 0
e mm10.chr8                 87855340 6417 - 129401213 I
e canFam3.chr16             18152653 571 -  59632846 I
e chlSab2.chr7             135596776 708 + 135778131 I

a score=1043996.000000
s hg38.chr4_KI270925v1_alt    478038 441 +    555799  
s panTro4.chr4             193191120 441 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198269464 437 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113937988 434 + 115148730  
i nomLeu3.chr7b            C 0 I 138
s rheMac3.chr5             183852437 435 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189245854 435 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178664176 435 + 178775436  
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190705652 431 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18153224 535 -  59632846  
i canFam3.chr16            I 571 C 0
e mm10.chr8                 87855340 6417 - 129401213 I
e chlSab2.chr7             135596776 708 + 135778131 I

a score=3276.000000
s hg38.chr4_KI270925v1_alt    478479 1 +    555799 a
s panTro4.chr4             193191561 1 + 193495092 a
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198269901 1 + 198332218 a
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113938560 1 + 115148730 A
i nomLeu3.chr7b            I 138 C 0
s rheMac3.chr5             183852872 1 + 184069350 a
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189246289 1 + 189454096 a
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178664611 1 + 178775436 A
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190706083 1 - 190850796 a
i calJac3.chr3             C 0 I 2
s canFam3.chr16             18153759 1 -  59632846 a
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87855340 6417 - 129401213 I
e chlSab2.chr7             135596776 708 + 135778131 I

a score=51547.000000
s hg38.chr4_KI270925v1_alt    478480 23 +    555799 accacgcagagccgtcggacaaa
s panTro4.chr4             193191562 23 + 193495092 accacgcagagccgtcagacaaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198269902 23 + 198332218 accacgcagagccgtcggacaaa
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113938561 23 + 115148730 ACCACGCAGAGCCGTCGGACACA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183852873 23 + 184069350 accacgcagagctgtcagacaaa
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189246290 23 + 189454096 accacgcagagctgtcagacaaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178664612 23 + 178775436 ACCACGCAGAGCTGTCAGACAAA
i papAnu2.chr5             C 0 C 0
s canFam3.chr16             18153760 23 -  59632846 accatgaggagccatcagataaa
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87855340 6417 - 129401213 I
e calJac3.chr3             190706084  2 - 190850796 I
e chlSab2.chr7             135596776 708 + 135778131 I

a score=2100.000000
s hg38.chr4_KI270925v1_alt    478503 1 +    555799 c
s panTro4.chr4             193191585 1 + 193495092 c
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198269925 1 + 198332218 c
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113938584 1 + 115148730 C
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183852896 1 + 184069350 c
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189246313 1 + 189454096 c
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178664635 1 + 178775436 C
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87855340 6417 - 129401213 I
e canFam3.chr16             18153783 0 -  59632846 C
e calJac3.chr3             190706084 2 - 190850796 I
e chlSab2.chr7             135596776 708 + 135778131 I

a score=2784.000000
s hg38.chr4_KI270925v1_alt    478504 5 +    555799 acaaa
s panTro4.chr4             193191586 5 + 193495092 acaaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198269926 5 + 198332218 acaaa
i ponAbe2.chr4             C 0 I 411
s nomLeu3.chr7b            113938585 5 + 115148730 ACAAA
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87855340 6417 - 129401213 I
e canFam3.chr16             18153783 0 -  59632846 C
e calJac3.chr3             190706084 2 - 190850796 I
e chlSab2.chr7             135596776 708 + 135778131 I
e papAnu2.chr5             178664636 0 + 178775436 C
e macFas5.chr5             189246314 0 + 189454096 C
e rheMac3.chr5             183852897 0 + 184069350 C

a score=65747.000000
s hg38.chr4_KI270925v1_alt    478509 141 +    555799 CCACGCAGACCCGTCGGACAAACACAAACCACGCAGAGCCGTCGGACAAACACAAACCAGGCAGAGCCGTCGGACAAACACAAACCACGCAGACCCGTCGGACAAACACAAACCATGCAGAGCCGTCGGACAAACACAAAC
s panTro4.chr4             193191591 141 + 193495092 CCACTCAGACCCGTCGGACGAACACAAACCGCGCAGAGCCGTCGGACGAACACAAACCACGCAGACCCGTCGGACGAACACAAACCACGCAGAGCCGTCGGACGAACACAAACCGCGCAGAGCCGTCGGACGAACACAAAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198270342 141 + 198332218 CCACGCGGAGCCGTCGGACAAACACAAGCCACGCGGAGCCGTCGGACAAACACAAGCCACGCGGAGCCGTCGGACAAACACAAACCACGCGGAGCCGTCGGACAAACACAAGCCACGCGGAGCCGTCGGACAAACACAaac
i ponAbe2.chr4             I 411 C 0
s nomLeu3.chr7b            113938590 141 + 115148730 CCACACAGAGCCGTCGGACACACACAAACCACACGGAGCCGTCGGACACACACAAACCACGTGGAGCCGTCGGAGAAACACAAACCACGCGGAGCCGTCGGACATACACAAACCACACAGAGCTGCCGAAGAAACACAaac
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87855340 6417 - 129401213 I
e canFam3.chr16             18153783   0 -  59632846 C
e calJac3.chr3             190706084   2 - 190850796 I
e chlSab2.chr7             135596776 708 + 135778131 I
e papAnu2.chr5             178664636   0 + 178775436 C
e macFas5.chr5             189246314   0 + 189454096 C
e rheMac3.chr5             183852897   0 + 184069350 C

a score=8390.000000
s hg38.chr4_KI270925v1_alt    478650 15 +    555799 CAGGCAGACCCGTTG
s panTro4.chr4             193191732 15 + 193495092 CGCGCAGAGCCGTTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198270483 15 + 198332218 cacgcggagccatca
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113938731 15 + 115148730 catacagagccatta
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190706086 15 - 190850796 catgcagagccatca
i calJac3.chr3             I 2 C 0
e mm10.chr8                 87855340 6417 - 129401213 I
e canFam3.chr16             18153783  0 -  59632846 C
e chlSab2.chr7             135596776 708 + 135778131 I
e papAnu2.chr5             178664636  0 + 178775436 C
e macFas5.chr5             189246314  0 + 189454096 C
e rheMac3.chr5             183852897  0 + 184069350 C

a score=7335.000000
s hg38.chr4_KI270925v1_alt    478665 6 +    555799 gacaaa
s panTro4.chr4             193191747 6 + 193495092 gacaaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198270498 6 + 198332218 gacaaa
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113938746 6 + 115148730 gacaaa
i nomLeu3.chr7b            C 0 C 0
s chlSab2.chr7             135597484 6 + 135778131 gacaaa
i chlSab2.chr7             I 708 C 0
s calJac3.chr3             190706101 6 - 190850796 cacaaa
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87855340 6417 - 129401213 I
e canFam3.chr16             18153783 0 -  59632846 C
e papAnu2.chr5             178664636 0 + 178775436 C
e macFas5.chr5             189246314 0 + 189454096 C
e rheMac3.chr5             183852897 0 + 184069350 C

a score=700.000000
s hg38.chr4_KI270925v1_alt    478671 1 +    555799 t
s panTro4.chr4             193191753 1 + 193495092 t
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198270504 1 + 198332218 t
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113938752 1 + 115148730 t
i nomLeu3.chr7b            C 0 C 0
s chlSab2.chr7             135597490 1 + 135778131 c
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190706107 1 - 190850796 c
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18153783 1 -  59632846 t
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87855340 6417 - 129401213 I
e papAnu2.chr5             178664636 0 + 178775436 C
e macFas5.chr5             189246314 0 + 189454096 C
e rheMac3.chr5             183852897 0 + 184069350 C

a score=681252.000000
s hg38.chr4_KI270925v1_alt    478672 211 +    555799 tcaaaatgagaaaccgtctctctttctgaaacggactgtattcttcaaagtgtccacgtcataaaaggcaaaaataggcttctgaaatgttcc--------aggaggctagaaaaacgcatgacaatctcttcctagactggatcatgtactggaggaagaaaaaaggctgggaaggactttatggggtcagttgacaaaaatggaacgctgatggtag
s panTro4.chr4             193191754 211 + 193495092 tcaaaatgagaaaccgtctgtctttctgaaacggactgtattcttcaaagtgtccatgtcataaaaggcaaaaataggcttctgaaatgttcc--------aggaggctagaaaaacgcatgacaatctcttcctagaccggatcatgtactggaggaagaaaaaaggctgggaaggactttatggggtcagttgacaaaaatggaacgctgatggtag
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198270505 211 + 198332218 tcaaaatgagacaccatctctctttctgaatcagactgtattcttcaaaatgtccatgtcataaaaggcaaaaataggcttctgaaatgttcc--------aggaggctagaaaaacgcatgacaatctcttcctagactggatcatgtacaggaggcagaaaaaaggctgggaaggactttatggggtcagttgacaaaaatggaactccgatggtag
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113938753 211 + 115148730 tcaaaatgagaaaccgtctctctttctaaaacggactgtattcttcaaaatgtccatgtcataaaaggcaaaaataggcttccgaaatgttcc--------aggaggctagaaaaacacatgacaatctcttcctagactggatcatgtactggaggaagaaaaaaggctgggaaggacattatggggtcagctgacaaaagtggaacgccgatggtag
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183852897 210 + 184069350 tcaaaatgacaaaccgtctctctttctaaaacggactgtattcttgagaatgtccacatcataaaaggcaaaaataggc-tctgaaatgttcc--------aggaggctagaaaaatgcacgacaatctcttcctagactggaccatgtactggaggaagagaaaagcctgggaaggacattacggggtcagctgacaaaaacggaacgccgatggcag
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189246314 210 + 189454096 tcaaaatgacaaaccgtctctctttctaaaacggactgtattcttgagaatgtccacatcataaaaggcaaaaataggc-tctgaaatgttcc--------aggaggctagaaaaatgcacgacaaTCTCTTCCTAGACTGGACTATGTACTGGAGGAAGAGAAAAGCCTGGGAAGGACATTACGGGGTCAGCTGACAAAAACGGAACGCCGATGGCAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178664636 210 + 178775436 TCAAAATGAGAAACCGTCTCTCTTTCTAAAACGGACTGTATTCTTCAGAATGTCCACGTCATAAAAGGCAAAAATAGGC-TCTGAAATGTTCC--------AGGAGGCTAGAAAAATGCACGACAATCTCTTCCTAGACTGGACCATGTactggaggaagagaaaagcctGGGAAGGACATTACGGGGTCAGCTGACAAAAACGGAACGCCGATGGCGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135597491 211 + 135778131 tcaaaatgagaaaccgtctctctttctaaaacggactgtattcttgagaatgtccacgtcataaaaggcaaaaataggcttctgaaatgttcc--------aggaggctagaaaaatgcacgacaaTCTCTTCCTAGACTGGACCATGTACTGGAGGAAGAGAAAAGCCTGGAAAGGACATTACGGGGTCAGCTGACAAAAATGGAACGCCGATGGCAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190706108 196 - 190850796 acgaaatgagaccctgtctctctttttaaaagggactgctttcttcaaaaggtccttgtcatagaaggcaaaaataggcttctgaaatgttcc--------aggaggttagaaaaatgcatgacaaTCTCTTCCTAGACTGAATCATGTACTCGAGGAAAAAGAAAGTCTAGGAAGGACATTATAGGGTC---------------AATGCTAATGGTAG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18153784 214 -  59632846 ccaaaataaggaacattctcttttttaaaaagggaccgtattcttcaaaacatcaatgtcataaaaggcaaaaacaggc-tgtggaatgttccttccaggttagagactaaagaga--catgacaatctgttcttaaactggatcatgtactgcagg--ggaaaagggcaataaaaaacattatggggtcaactgaaaacattggaatatggataataa
i canFam3.chr16            C 0 I 192
e mm10.chr8                 87855340 6417 - 129401213 I

a score=1255310.000000
s hg38.chr4_KI270925v1_alt    478883 436 +    555799  
s panTro4.chr4             193191965 437 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198270716 441 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113938964 434 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183853107 439 + 184069350  
i rheMac3.chr5             C 0 M 391
s macFas5.chr5             189246524 439 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178664846 435 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135597702 424 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190706304 463 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18154190 627 -  59632846  
i canFam3.chr16            I 192 C 0
e mm10.chr8                 87855340 6417 - 129401213 I

a score=310120.000000
s hg38.chr4_KI270925v1_alt    479319 121 +    555799 ATAAATTTTATGATGCTTTCAAATAATCTTTAACAAG--AAAAAAATACAGGTAAGGAGCAAATTAAACATTTGAAAAATAAACTACAGATTTACATATAAAAGCATGATCACCGATTTGATC
s panTro4.chr4             193192402 121 + 193495092 ataaattttatGATGCTTTCAAATAATCTTTAACAAG--AAAAAAATACAGGTAAGGAGCAAATTAAACATTTGAAAAATAAACTACAGATTTACATATAAAAGCATGATCACCGATTTGATC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198271157 120 + 198332218 ATAAGTTTTATGATGCTTTCAAATAATCTTTAACAAG--AAAAAAGTATAGGTAAGGAGCAAAGTAAACATTTG-AAAATAAACTACAGATTTACATATAAAAGCATGATCACTGATTTGATC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113939398 121 + 115148730 ATAAATTTTATGATGCTTTCAAATAATCTTTAACAAG--AAAAAAATAAAGGTAAGGAGCAAATTAAACATTTGAAAAATAAACAACAGATTTACACATAAAAGCATGATCACTGATTTGATC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189246963 122 + 189454096 ATAAATTTTATGATGCTTTCAAATAATCTTTAACAAG-AAAAAAAATAAAGGTAAGCAGCAAATTAAACATTTGAAAAATAAACTACAGATTTACATATAAAAGCATGATCACTGATTTGATC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178665281 122 + 178775436 ataaattttatgatgctttcaaataatctttaacaag-aaaaaaaataaaggtaagcagcaaattaaacatttgaaaaataaactacaGATTTACATATAAAAGCATGATCACTGATTTGATC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135598126 122 + 135778131 ATAAATTTTATGATGCTTTCACATAATCTTTAACAAG-AAAAAAAATAAAGATAAGGAGCAAATTAAACATTTGAAAAATAAACTACAGATTTACATATAAAAGCATGATCACTGATTTGATC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190706767 115 - 190850796 ATAAATTCTATGATAGTTTCAAATAATCTTCAATGAG--AAAAAAA------TAAGGAGGAAATTAAACACTTGAAAAATAAACTACAGATTTACATATGAAAGCATGAGCACTGATTTGATC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18154817 122 -  59632846 ATAAACT-TAAGATGCTTTTAGATAATCTTTAACAAGAAACAAAAATAATAATAAAGTTAAGGGAAATTATTTGAAAAACAAACCACAGATTTAGATCTAAAAGTGTAAGGCTTAGTTTGATC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87855340 6417 - 129401213 I
e rheMac3.chr5             183853546 391 + 184069350 M

a score=134611.000000
s hg38.chr4_KI270925v1_alt    479440 67 +    555799 AGGA-AAAAAGCTAAATAGAACTGTGAAAAATGCAATATTTTTGTCAGTTT-AAAATATAAAGGAATAT
s panTro4.chr4             193192523 67 + 193495092 AGGA-AAAAAGCTAAATAAAACTGTGAAAAATGCAATATTTTTGTCAGTTT-AAAATATAAAGGAATAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198271277 68 + 198332218 AGGA-AAAAAGTTAAATAAAACTGTGAAAAATGCAAAATTTTTGTCAGTTTAAAAATATAAAGGAATAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113939519 66 + 115148730 AGGA-AAAAAGCTAATTAAAAC--TGAAAAATGCAAAAGTTTTGTCAGTTTAAAAATATAAAGGAATAT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189247085 68 + 189454096 AGGA-AAAAAGCTAATTAAAACTATGAAAAATGCAAAATTTTTGTCAGTTTAAAAATAAAAAGGAACAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178665403 68 + 178775436 agga-aaaaaactaattaaaactatgaaaaatgcaaaatttttgtcagtttaaaaataaaaaggaacat
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135598248 68 + 135778131 AGGA-AAAAAGCTCATTAAAACTATGAAAAATGCAAAAATTTTGTCAGTTTAAAAATAAAAAGGAATAT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190706882 67 - 190850796 AGAATAAAAAACTAATTAAAACTATGAAAATTGCCAAA--TTTGTCAGTTTAAAAATATAAAGGGATAT
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87855340 6417 - 129401213 I
e canFam3.chr16             18154939  0 -  59632846 C
e rheMac3.chr5             183853546 391 + 184069350 M

a score=17292.000000
s hg38.chr4_KI270925v1_alt    479507 6 +    555799 TTTCTT
s panTro4.chr4             193192590 6 + 193495092 TTTCTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198271345 6 + 198332218 TTTCTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113939585 6 + 115148730 TTTCTT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189247153 6 + 189454096 TTTCTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178665471 6 + 178775436 tttcTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135598316 6 + 135778131 TTTCTT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190706949 6 - 190850796 TTTCTT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87861757 6 - 129401213 tttcac
i mm10.chr8                I 6417 C 0
e canFam3.chr16             18154939 0 -  59632846 C
e rheMac3.chr5             183853546 391 + 184069350 M

a score=1796460.000000
s hg38.chr4_KI270925v1_alt    479513 608 +    555799  
s panTro4.chr4             193192596 606 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198271351 613 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113939591 607 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183853937 610 + 184069350  
i rheMac3.chr5             M 391 C 0
s macFas5.chr5             189247159 609 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178665477 610 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135598322 608 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190706955 620 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87861763 639 - 129401213  
i mm10.chr8                C 0 C 0
e canFam3.chr16             18154939   0 -  59632846 C

a score=3140146.000000
s hg38.chr4_KI270925v1_alt    480121 1022 +    555799  
s panTro4.chr4             193193202 1022 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198271964 1017 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113940198 1021 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183854547 1020 + 184069350  
i rheMac3.chr5             C 0 I 355
s macFas5.chr5             189247768 1020 + 189454096  
i macFas5.chr5             C 0 I 355
s papAnu2.chr5             178666087  992 + 178775436  
i papAnu2.chr5             C 0 I 355
s chlSab2.chr7             135598930 1016 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190707575 1047 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87862402  870 - 129401213  
i mm10.chr8                C 0 C 0
s canFam3.chr16             18154939 1050 -  59632846  
i canFam3.chr16            C 0 C 0

a score=18363.000000
s hg38.chr4_KI270925v1_alt    481143 5 +    555799 ACACT
s panTro4.chr4             193194224 5 + 193495092 ACACT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198272981 5 + 198332218 ACACT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113941219 5 + 115148730 ACACT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183855922 5 + 184069350 acaCT
i rheMac3.chr5             I 355 C 0
s macFas5.chr5             189249143 5 + 189454096 acaCT
i macFas5.chr5             I 355 C 0
s papAnu2.chr5             178667434 5 + 178775436 acacT
i papAnu2.chr5             I 355 C 0
s chlSab2.chr7             135599946 5 + 135778131 ACACT
i chlSab2.chr7             C 0 I 351
s calJac3.chr3             190708622 5 - 190850796 ACGCC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87863272 5 - 129401213 ATGCT
i mm10.chr8                C 0 C 0
s canFam3.chr16             18155989 5 -  59632846 ATTCT
i canFam3.chr16            C 0 C 0

a score=14695.000000
s hg38.chr4_KI270925v1_alt    481148 3 +    555799 GCA
s panTro4.chr4             193194229 3 + 193495092 GCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198272986 3 + 198332218 GCA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113941224 3 + 115148730 GCA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183855927 3 + 184069350 GCA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189249148 3 + 189454096 GCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178667439 3 + 178775436 GCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135600302 3 + 135778131 GCA
i chlSab2.chr7             I 351 C 0
s calJac3.chr3             190708627 3 - 190850796 GCA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87863277 3 - 129401213 GCA
i mm10.chr8                C 0 I 1285
s canFam3.chr16             18155994 3 -  59632846 GTA
i canFam3.chr16            C 0 C 0

a score=714305.000000
s hg38.chr4_KI270925v1_alt    481151 236 +    555799 CAGCTGACATTGGGCAGCCCTGCCCGAGCCCAGCGGCCTTGCTGATACCCATGTCCTCGGATGATCTGTTTTTGGTTTTGCTTTTGTTATTTTTGCTAGGTTCACAGTCAAATCAGGATAAGTCCGAACTGTCCCAAATCACCCGATCCTCAACCTCATTGTTCTGGCAGT------------------------CTAAAAAGTAATCATGGTCTGCCTACTCACATTTAAAT------------ACACATTTTAAAAATAATTCTTTCCTT
s panTro4.chr4             193194232 236 + 193495092 CAGCTGACATTGGGCAGCCCTGCCCAAGCCCAGCGGCCTTGCTGATACCCATGTCCTCGGATGATCTGTTTTTGGTTTTGCTTTTGTTATTTTTGCTAGGTTCACAGTCAAATCAGGATAAGTCCGAACTGTCCCAAATCACCCGATCCTCAACCTCATTGTTCTGGCAAT------------------------CTAAAAAGGAATCATGGTCTACCTAGTCACATTTAAAT------------ACACATTTTAAAAATAATTCTTTCCTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198272989 236 + 198332218 CAGCTGACATCGGGCAGCCCTGCCCAAGCCCAGCGGCCTTGCTGATACCCATGTCCTCGGATGATCTGTTTTTGGTTTTGCTTTTGTTATTTTTGCTAGGTTCACAGTCAAATCAGGATAAGTCCGAACTCTCCCAAATCACCCGATCCTCAACCTCATTGTTCTGGCAAT------------------------CTAAAAAGGAATCATGGTCTACCTACTCACATTTAAAT------------ACACATTTTAAAAATAATTCTTTCCTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113941227 236 + 115148730 CAGCTGACATCGGGCAGCCCTGCCCAAGCCCAGCGGCCTTGCTGATACCCATTTCCTCAGATGATCTGTTTTTGGTTTTGCTTTTGTTATTTTTGCTAGGTTCACAGTCAAATCAGGCTAAGTCCGAACTCTCCCAAATCACCCGATCCTCAACCTCATTGTTCTGGCAAT------------------------CTAGAAAGGAATCATGGTCTACCTACTCACATTTAAAT------------ACACATTTTAAAAATAATTCTTTCTTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183855930 236 + 184069350 CAGCTGACGTCCGGCAGCCCTGCCCAAGCCCAGTGGCCTTGCTGATACCCATTCCCTCAGACATTCCGTTTTTGGTTTTGTTTTTGCTATTTTTGCTAAGTTCACAGTCAAATTAGGATAAGTCCAAAGTCTCCCAAGTCACCCAATCCTCAACCTCATCGTTCTGGCAAT------------------------CTAAAAAGGAATCAAGGTCTACCTACTCACATTTACAT------------ACACATTTTAAAAATAATTCTTCCCTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189249151 236 + 189454096 CAGCTGACGTCCGGCAGCCCTGCCCAAGCCCAGTGGCCTTGCTGATACCCATTCCCTCAGACATTCCGTTTTTGGTTTTGTTTTTGCTATTTTTGCTAAGTTCACAGTCAAATTAGGATAAGTCCGAAGTCTCCCAAGTCACCCGATCCTCAACCTCATCGTTCTGGCAAT------------------------CTAAAAAGGAATCAAGGTCTACCTACTCACATTTACAT------------ACACATTTTAAAAATAATTCTTCCCTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178667442 248 + 178775436 CAGCTGACATCCGGCAGCCCTGCCCAAGCCCAGTGGCCTTGCTGATACCCATTTCCTCAGATGTTctggttttgggtttgtttttgctgtttttgctAAGTTCACAGTCAAATTAGGATAAGTCCGAACTCTCCCAAGTCACCCGATCCTCAACCTCATCGTTCTGGCAAT------------------------CTAAAAAGGAATCAAGGTCTACCTACGCACATTTACATACACATtttcacacacattttaaaaataattcttcccTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135600305 226 + 135778131 CAGCTGACGTCTGGCAGCGCTGCCCAAGCCCAGTGGCCTTGCTGATGCCAATTCCCTCAGACATTCCATTTTTGGTTTTG---------TTTTTGCTAAGTTCACAGTCAAATTAGGATAAGTCCGAACTCTCCCAAGTCA-CCGATCCTCAACCTCATCGTTCTGGCAAT------------------------CTAAAAAGGAATCAAGGTCTGCCTACTCACGTTTACAT------------ACACATTTTAAAAATAATTCTTTCCTT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190708630 235 - 190850796 CAGCTGACTTCGGCCAGTCCTGCCCAGGCCCAGCAGCCTTGCTGATACCCACTTCCTCGGATGTTCTGCTTTTGGTTTTGGTTTTGTCATTTCTGCTATGTTCACAATCAAATCAGGTTAAGTCCAAACTCTCCCAAAT-ATCCGATCCGCAACCTCATTGTTCTGGTGAT------------------------GCAAAAAGGAATCATGGTCTACTTACTCACTTTTAAAT------------ACACATCTGACAAATACTTCTTTCCTT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18155997 215 -  59632846 CAACCAATACCCGGCAAGCCT--------------------CTGACATCCATTTCCTGGTATGCTCTGACCT-----------------TTCTTGCTGGATTCACAGTGGGATCAGGTTCAGTCCAAACT---CCAAATCACCTGATCCTCTACCTCATTTTTCTGGCGATCCTGGCATTCTGCATCCAAAAGCCCTACAGAGTAGTCATGGTCTACTTACT----TTTAAAT------------AGGTGTTTTA-AAATAACTCTTTCCTG
i canFam3.chr16            C 0 I 114
e mm10.chr8                 87863280 1285 - 129401213 I

a score=398056.000000
s hg38.chr4_KI270925v1_alt    481387 108 +    555799 AAAGCCGATCTTTAAATCAATCATCCTTCTGCATTTTAGCTGTCTGGATGCCAGTCTTATCTTTCCCCTATGGTCTTCTCATTTCCCAGTCATTATAAATTAGTGTGT
s panTro4.chr4             193194468 108 + 193495092 AAAGCCGATCTTTAAATCAATCATCCTTCTGCATTTTAGCTGTCTGGATGCCATTCTTATCTTTCCCCTATGGTCTTCTCATTTCCCAGTCATTATAAATTAGTGTGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198273225 108 + 198332218 AAAGCCGATCTTTAAATCAATCATCCTTCTGCATTTTAGCTGTCTGGATGCCAGTCTTATCTTTCCCCTATGGTCTTCTCATTTCCCAGTCATTATAAATTAGCGTGT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113941463 108 + 115148730 AAAGCCGATCTTTAAATCAATCATCCTTCTGCATTTTAGCTGTCTGGGTGCCAGTCTTATCTTTCCCCTATGGTCTTCTCATTTCCCAGTCATTATAAATTAGTGTGT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183856166 108 + 184069350 AAAGCCGATCTTTAAATCAATCATCCTTCTGCATTTTAGCTGTCTGGATGCCAGTCTTATCTTTCCCCTATGGTCTTCTCATTTGCCAGTCATTATAAATTAGCATGT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189249387 108 + 189454096 AAAGCTGATCTTTAAATCAATCATCCTTCTGCATTTTAGCTGTCTGGATGCCAGTCTTATCTTTCCCCTATGGTCTTCTCATTTGCCAGTCATTATAAATTAGCATGT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178667690 108 + 178775436 AAAGTCGATCTTTAAATCAATCATCCTTCTGCATTTTAGCTGTCTGGATGCCAGTCTTATCTTTCCCCTATGGTCTTCTCATTTGCCAGTCATTATAAATTAGCATGT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135600531 108 + 135778131 AAAGCCGATCTTTAAATCAATCATCCTTCTGCATTTTAGCTGTCTGGATGCCAGTCTTATCTTTCCCCTATGGTCTTCTCATTTGCCGGTCATTATAAATTAGCATGT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190708865 107 - 190850796 AAAGCCCATCTTTAGATCAATCATCCTTCTGCATTTTAGCTGTCTGCACGCCAGTCTCATCCTTCCCCTATGGTCTT-TCATTTGCCAGTCGTTATAAATTAGCATGT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18156326 107 -  59632846 AAAACTGTTCTTTGAATTGATCGCCCTTGTACAGTTTAGCTGTCCAAGTGCCAGTCTTATTCTTCCCC-ATGGTCTTCTCATCAGCCAGTCATTATAAATTAGTATGT
i canFam3.chr16            I 114 C 0
e mm10.chr8                 87863280 1285 - 129401213 I

a score=2527289.000000
s hg38.chr4_KI270925v1_alt    481495 695 +    555799  
s panTro4.chr4             193194576 695 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198273333 695 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113941571 697 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183856274 697 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189249495 697 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178667798 693 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135600639 708 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190708972 686 - 190850796  
i calJac3.chr3             C 0 I 323
s mm10.chr8                 87864565 654 - 129401213  
i mm10.chr8                I 1285 C 0
s canFam3.chr16             18156433 733 -  59632846  
i canFam3.chr16            C 0 C 0

a score=11820.000000
s hg38.chr4_KI270925v1_alt    482190 5 +    555799 TATTC
s panTro4.chr4             193195271 5 + 193495092 TATTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198274028 5 + 198332218 TATTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113942268 5 + 115148730 TATTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183856971 5 + 184069350 TATTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189250192 5 + 189454096 TATTT
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135601347 5 + 135778131 TATTT
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87865219 5 - 129401213 GATTT
i mm10.chr8                C 0 I 40
s canFam3.chr16             18157166 5 -  59632846 GATTT
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190709658 323 - 190850796 I
e papAnu2.chr5             178668491 0 + 178775436 C

a score=826825.000000
s hg38.chr4_KI270925v1_alt    482195 270 +    555799 AAAAACTGTAGAGTTAAGAGGGTGATAAGTAGAGAAACAACTACAAAAGGAA-TATTCTTATAGACAGACCAAGTTCTAAGAAGAGT------------------CACA------TGGG---A--AAAAAGACA---TGGTTGAAGTTAGAAGGTGTCCGTAGAAGTGTAATTAACACAGTCCTGCAATAATTTTTAACATCAGAAGTGGACT--ATA--TATGTTGTCATGTTCCTTGTCCTATAGAACGCTCATATACTTCACTCTCTTTAAAGTAAGTCTGAATCTGTGTATTAATTTCATTTT
s panTro4.chr4             193195276 270 + 193495092 AAAAATTGTAGAGTTAAGAGGGTGATAAGTAGAGAAACAACTACAAAAGGAA-TATTCTTATAGATAGACCAAGTGCTAAGAAGAGT------------------TACA------TGGG---A--AAAAAGACA---TGGTTGAAGTTAGAAGGTGTCAGTAGAAGTGTAATTAACACAGTCCTGTAATAATTTTTAACATCAGAAGTGGACT--ATA--TATGTTGTCATGTTCCTTGTCCTATAGAATCCTCATATACTTCACTGTCTTTAAAATAAGTCTGAATTTTTGTATTAATTTCATTTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198274033 271 + 198332218 AAAAATTGTAGAGTTAAGAGGGTGATAAGTAGAGAAACAACTACAAAAGGAA-TATTCTTATAGATAGACCAAGTGCTAACAAGAGT------------------TACA------TGGG--AA--AAAAAGACA---TGGTTGAAGTTAGAAGGTGTCAGTAGAAGTGTAATTAACACAGCCCTATAATAATTTTTAACATCAGAACTGGACT--ATA--TATGTTGTCATGTTCCTTGTCTTACATAATCCTCATATACTTCACTCTCTTTAAAATAAGTCTGAATTtttgtattaatttcatttt
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113942273 267 + 115148730 AAAAATTCTAGAGTTAAGA-GGTGATAGGTAGAGAAACAACTACAAAAGGTA-TATTCTTATAGATAGACCAA-TGCTAAGAAGAGT------------------TACA------TGGG------AAAAAGACA---TGGTTGAAGTTAGAAGGTGTCAGTAGAAGTGTAATTAACACAGTCCTATAATAATTTTTAACATCAGAACTGGACT--ATA--TATGTTGTCATGTTCCTTGTCTTATGTAATCCTCATATGCTTCACTCTCTTTAAAATAAGTCTGAATTTTTGTATTAATTTCATTTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183856976 273 + 184069350 AAAAGTTCTAGAGTTAACAGGGTGATAGGTAGAGAAACAATTACAAAAGGAA-TATTCTTATAGATAGACCAAATGCTAGGAAGAGT------------------TACA------TGGGAAAA--AAAAAGACA---TGGTTGAAGTTAGAAGGTGTCAGTAGAAGTGTAATTAACACAGTCCTATAATAAGTTGCAATATTGGAACTGGACT--CTA--TATCTTGTCATGTCCCTTGTCTTATGTAATCCTCACATGCTTCACACTCTTTAAAATAAGTTTGAATTTTTGTATTAATTTCATTTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189250197 273 + 189454096 AAAAGTTCTAGAGTTAACAGGGTGATAGGTAGAGAAACAATTACAAAAGGAA-TATTCTTATAGATAGACCAAATGCTAGGAAGAGT------------------TACA------TGGGAAAA--AAAAAGACA---TGGTTGAAGTTAGAAGGTGTCAGTAGAAGTGTAATTAACACAGTCCTATAATAAGTTGCAATATTGGAACTGGACT--CTA--TATCTTGTCATGTCCCTTGTCTTATGTAATCCTCACATGCTTCACACTCTTTAAAATAAGTTTGAATTTTTGTATTAATTTCATTTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178668491 272 + 178775436 -AAAGTTCTAGAGTTAACAGGGTGATAGGTAGAGAAACAATTACAAAAGGAA-TATTCTTATAGATAGACCAAATGCTAGGAAGAGt------------------taca------tgggaaaa--aaaaagaca---tggttgAAGTTAGAAGGTGTCAGTAGAAGTGTAATTAACACAGTCCTATAATAAGTTGCAATATTGGAACTGGTCT--CTA--TATCTTGTCATGTCCCTTGTCTTATGTAATCCTCACATGCTTCACACTCtttaaaataagtttgaatttttgtattaatttcatttt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135601352 273 + 135778131 AAAAGTTCTAGAGTTAACAGGGTGATAGGTAGAGAAACAATTACAAAAGGAA-TATTCTTATAGATAGACCAAATGCTAGGAAGAGT------------------TACA------TGGGAAAA--AAAAAGACA---TGGTTGAAGTTAGAAGGTGTCAGTAGAAGTGTAATTAACACAGTCCTATAATAATTTGAAATATTGGAACTGGACT--CTA--TATCTTGTCATGTCCCTTGTCTTATGTAATCCTCACATGCTTCACACTCTTTAAAATAAGTTTGAATTTTTGTATTAATTTCATTTT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190709981 269 - 190850796 AAAAATTCTATAGTTAAGAGGGTGATTGGGAGAAAAACAACTACAAAAAGAA-TAGTCTTCTAGAGAGACCGAATGCTAAAAAGAGT------------------TACA------TGGG--GA--AAAAAGGCA---TGGCTGAAGTTAGAAGATATCAATAAACATATAATTAACACAGTCCTATAATAATTTTTAACATCATAACTGGACT--TCA--CATGTTGCCATGTTCCTTGTCTTCTGCAATCTTCATATGCATCACTCTCTTTTAAAT--GTCTGAATTTTGGTATTAAATTCATTTT
i calJac3.chr3             I 323 C 0
s mm10.chr8                 87865264 232 - 129401213 GAAGGATCAGgagaaagagaggagggagggagaga---------ggaaggaa-gagagagacagaTGAGCAGAAAGACAAAAAAAGTGAGTCTAGAGATCAAGTATAAA------AGAGAAAAATAAAAAGATA---TGACCAAAGTTCCATGGCATTAGTTAAAATGTGATTAA-----TGATATTGTTATCTTTACAAGCATACCTGGGCTCCCCA--TACATTGTCATGTCT----GCCCATGTGACCCTCAGA---------------------------------------------ACTTT
i mm10.chr8                I 40 C 0
s canFam3.chr16             18157171 274 -  59632846 CAAAATTCAAGACTTAAGAAGGTGATAG---------CAACTACAAGAGGGATTTTTCTTCTATAGAGACCAAATG-TAAAAAGAGT------------------TACAGACAATAGAGAAAT--TAGAAATCATATTGCTTAAAGTCAAAAGACACCAGTAAAAGTATGATGAACATAGTATTATAATAATGGTCAACAACACAAATGGACA--TTGGCTATGTTGTCATGCATTCTGTCTTGTTGAATTTTCATATA-TCCACTCTCCTTCAAATAAGACTGGCTTTGTGTACTAAttttatttt
i canFam3.chr16            C 0 I 175

a score=396678.000000
s hg38.chr4_KI270925v1_alt    482465 116 +    555799 TAA-AGCATTTTCATA---TTTCCATGCAGCCCTGAGAAGACATG---AGGACAGGAATTACTACTCCCATTTTACAACGAAGAAAGCTAAAACCAAAAGTCTTCTTAGATTCTGACCTCTAA
s panTro4.chr4             193195546 119 + 193495092 TAA-AGcattttcatatttttttcatgcagccctgagaagacatg---aggacaggaattattattcccgttttacaatgaagaaagctaaaaccaaaagTCTTCTTAGATTCTGACCTCTAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198274304 119 + 198332218 taa-agcattttcatatttttttcatgcagccttgagaagacatg---aggacaggaattcttattcccattttacaatgaagaaagctgaaaccaaaagTCTTCTTAGATTCTGACCTTTAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113942540 116 + 115148730 TAa-agcattttcatg---ttttcatgcagccctgagaagacatg---aggacaggaattattatttccattttacaatgaagaaagctaaaaccaaaagTCTTCTTAGATTCTGACCTCTAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183857249 118 + 184069350 TAA-AGTGTTTTCATA-TTTTTTCATGcagccctgagaagacatg---aggacaggaattattattcctgttttacaatgaagaaagctaaaaccaaaagTCTTCTTAGATTCTAACCTCTAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189250470 118 + 189454096 TAA-AGTGTTTTCATA-TTTTTTCATGcagccctgagaagacatg---aggacaggaattattattcctgttttacaatgaagaaagctaaaaccaaaagTCTTCTTAGATTCTAACCTCTAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178668763 118 + 178775436 taa-agcgttttcaca-ttttttcatgCAGCCCTGAGAAGACATG---AGGACAGgaattattattcctgttttacaatGAAGAAAGCTAAAACCAAAAGTCTTCTTAGATTCTAACCTCTAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135601625 118 + 135778131 TAa-agtgttttcata-ttttttcatgcagccctgagaagacatg---aggacaggaattattattcccgttttacaatgaagaaagctaaaaccaaaagTCTTCTTAGATTCTGACCTCTAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190710250 121 - 190850796 TAA-AGCACTTTCAGT-TTTTTTCATGCAGTCATGGGAAATTATGATTaggacaggaattacaattcccattttacaatgaagaaagctaaaaccaaaagTCTTCTTAGATTCTGACTTCTAA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87865496 115 - 129401213 TAATAGGAATTTCACA--TTTTCCTTGCCACTTTGAGAGATCCCC---AGAACAGAGATTAATTTTTGTATTTCAAAAGTAAGAAAACCAAAACCAAAAA---TGTTGGATTCCAACCACTGA
i mm10.chr8                C 0 I 459
s canFam3.chr16             18157620  79 -  59632846 TAA-AGcattttcaca-tttcctcatgccactctgagaggggatc---agggcaggaattattat--------------------------------------tcttaGAATC-AGCTTCTAA
i canFam3.chr16            I 175 C 0

a score=87496.000000
s hg38.chr4_KI270925v1_alt    482581 30 +    555799 ---CATTAGCTTCTCCAAATATTCCCTTAAAGG
s panTro4.chr4             193195665 30 + 193495092 ---CATTAGCTTCTCCAAATATTCCCTTAAAGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198274423 29 + 198332218 ---CATTAGC-TCTCCAAACATTCCCTTAAAGG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113942656 29 + 115148730 ---CATTAGC-TCTCTGAACATTCCCTTAAAGG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183857367 29 + 184069350 ---AATTAGC-TCTCCGAACATTCCCTTAAAGG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189250588 29 + 189454096 ---AATTAGC-TCTCCGAACATTCCCTTAAAGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178668881 29 + 178775436 ---AATTAGC-TCTCCGAACATTCCCTTAAAGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135601743 29 + 135778131 ---AATTAGC-TCTCCAAACATTCCCATAAAGG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190710371 29 - 190850796 ---AATTAGC-TCTCTGAACATTCCCTTAAAGG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18157699 32 -  59632846 AATGAGTTGC-TGTTGGAACTGTCCCTTAAAGA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87865611 459 - 129401213 I

a score=424580.000000
s hg38.chr4_KI270925v1_alt    482611 119 +    555799 ACCAAGTCTAAGCAATTTCA-CAAGAAAATGAGTTTGCACAGATATTAAATTTGCTTTTTGA--C--TGTTTTATTAA-------ATACTC-------AAAACAGAAT-----------------GGAAAAAGACATCTTGAAACAAATTAAAAT
s panTro4.chr4             193195695 115 + 193495092 ACCAAGTCTAAGCAATTTCAGCAAGAAAATGAGTTTTCACAGATATTAAATTTGCTTTTTTA--C--TGTTTTATTAT-------ATACT------------CAGAAT-----------------GGAAAAAGACATCTTGAAACAAATTAAAAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198274452 120 + 198332218 ACCAAGTCTAAGCAATTTCAGCAAGAAAATGAGTTTGCACAGATACTAAATTTGCTTTTTTA--C--TGTTTTATTAT-------ATACTC-------AAAACAGAAT-----------------GGAAAAAGACATCTTGAAACAAATTAAAAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113942685 120 + 115148730 ACCAAGTCTAAGCAATTTCAATAAGAAAATGAGTTTGCACAGATACTAAATTTACTTTTTTA--C--TGTTTTATTAT-------ATACTC-------AAAACAGAAT-----------------GGAAAAAGACATCTTGAAACAAATTAAAAT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183857396 120 + 184069350 ACCAAGTCTAAGCAATTTCAGCAAGAAAATGAGTTTGCACAGATACTAAATTTGCTTTTTTA--C--TGTTTTATTAT-------ATACTC-------AAAACAGAAT-----------------GGAAAAAGACATCTTGAAACAAATTAAAAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189250617 120 + 189454096 ACCAAGTCTAAGCAATTTCAGCAAGAAAATGAGTTTGCACAGATACTAAATTTGCTTTTTTA--C--TGTTTTATTAT-------ATACTC-------AAAACAGAAT-----------------GGAAAAAGACATATTGAAACAAATTAAAAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178668910 118 + 178775436 ACCAAGTCTAAGCAATTTCAGCAAGAAAATGAGTTTGCACAGATACTAAATTtgctttttta--c--tgttttattat-------atactc-------aaaacagaat-----------------ggaaaaagacatcttgaaacaaattaaa--
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135601772 115 + 135778131 ACCAAGTCTAAGCAATTTCAGCAAGAAAATGAGTTTGCACAGATACTAAATTTGCTTTTTTA--C--TGTTTTATGAT-------ATACT------------CAGAAT-----------------GGAAAAAGACATCTTGAAACAAATTAAAAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190710400 120 - 190850796 ACCAAGTCTAAGCAATTTTAGCCAGAAAATGAGTTTGCACAGATAGTAAATTTGCTATTTTA--C--TGTTTTATTAT-------ATACTC-------AACACAGAAT-----------------GGAAAGAGACATCTTGAAACAAATTGACAT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87866070 128 - 129401213 ACCAAACTAAAGCAATTCCAGCAACAAAGTAAATTTGCATACCTACTGAGCTTACCTTTCTACTC--TGTTTTATCATTGAAACAGTGCTA-------AAATCATAAC-----------------GCAAAAAGATATGTTGAAA-AAGTAAAAAT
i mm10.chr8                I 459 C 0
s canFam3.chr16             18157731 144 -  59632846 GCCACATCTAAGCAATT-CAGCAAGGAAGTGAA-TAATACACTTATTGAATTTGTTTTTTCA--CTATGCTTTATTAT-------ACACTCAGAATATAAAACAAAACAATACTAAAAAAACAGGGAAAAAAGGCATTTTGGAACAAATTAAAAC
i canFam3.chr16            C 0 C 0

a score=4095.000000
s hg38.chr4_KI270925v1_alt    482730 1 +    555799 A
s panTro4.chr4             193195810 1 + 193495092 A
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198274572 1 + 198332218 A
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113942805 1 + 115148730 A
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183857516 1 + 184069350 A
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189250737 1 + 189454096 A
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178669028 1 + 178775436 a
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135601887 1 + 135778131 A
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190710520 1 - 190850796 A
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87866198 1 - 129401213 A
i mm10.chr8                C 0 C 0
e canFam3.chr16             18157875 0 -  59632846 C

a score=319366.000000
s hg38.chr4_KI270925v1_alt    482731 112 +    555799 CGGTCAGCCCTCCCTATGCATGGGTT--TCTCATCCTTGGATAGAAACTCACAGACATGGAGGGTCAACTGTACTATTTTCCATCTGGCTTCAACCACCTGCAGATGGGGAGCC
s panTro4.chr4             193195811 112 + 193495092 CAGTCAGCCCTCCCTATGCATGGGTT--TCTCGTCCTTGGATAGAAACTCACAGATATGGAGGGTCAACTGTACTATTTTCCATCTGGCTTCAACCACCTGCAGATGGGGAGCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198274573 114 + 198332218 CAGTCAGCCCTCCCTATGCATGGGTTTCTCTCATCCTTGGATAGAAACTCACAGATATGGAGGGTCAACTGTGCTATTTTCCATCTGGCTTCAACCACCCACAGATGGGGAGCC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113942806 100 + 115148730 CAGTCAGCCCTCCCTATGCATGGGTT--TCTCATC------------CTCACAGATATGGAGGGTCAACTGTACTATTTTCCATCTGGCTTCAACCACCTGCAGATGGGGAGCC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183857517 112 + 184069350 GAGTCAGCCCTCGCTATGCATGGGTT--TCTCATCCTCGGATGGAAACTCACAGATGCGGAGGGTCAACTGTACTATTTTCCACCTGGCTTCAGCCACCTGCAGACGGGGAGCC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189250738 112 + 189454096 GAGTCAGCCCTCGCTATGCATGGGTT--TCTCATCCTCGGATGGAAACTCACAGATGCGGAGGGTCAACTGTACTATTTTCCACCTGGCTTCAGCCACCTGCAGACGGGGAGCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178669029 112 + 178775436 gagTCAGCCCTCGCTATGCATGGGTT--TCTCATCCTTGGATGGAAACTCACAGATGCGGAGGGTCAACTGTACTATTTTCCAACTGGCTTCAGCCACCTGCAGACGGGGAGCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135601888 112 + 135778131 GAGTCAGCCCTCCCTATGCATGGGTT--TCTCATCCTTGGATAGAAACTCACAGATACGGAGGGTCAACTGTACTATTTTCCACCCGGCTTCAGCCACCTGCAGACAGGGAGCC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190710521 112 - 190850796 CAGTCAGGCCTCCCTATGCGTGAGTT--CCTCATCCTCGGATAGAAACTGACAGATAGGGAGGGTCCACTGTGCTATTTTCCATCTGGCTCCAACTACCTGCAGATGCGGAGCC
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87866199   0 - 129401213 C
e canFam3.chr16             18157875   0 -  59632846 C

a score=50393.000000
s hg38.chr4_KI270925v1_alt    482843 23 +    555799 TGTGGACACAGAGAGCTGCCTGT
s panTro4.chr4             193195923 23 + 193495092 TGTGGACACAGAGAGCTGCCTGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198274687 23 + 198332218 TGGGGACACAGAGAGCTGCCTGT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113942906 23 + 115148730 TGTGGACACAGAGAGCTGCCTGT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183857629 21 + 184069350 TGTGGACAC--AGGGCTGCCTGC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189250850 21 + 189454096 TGTGGACAC--AGGGCTGCCTGC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178669141 21 + 178775436 TGTGGACAC--AGGGCTGCCTGC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135602000 21 + 135778131 CGTGGACAC--AGGGCTGCCTGC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190710633 22 - 190850796 TGC-GATACAGAGGGCTGCTTGT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87866199 18 - 129401213 TGTGGAAACATATAGCAG-----
i mm10.chr8                C 0 C 0
e canFam3.chr16             18157875  0 -  59632846 C

a score=275578.000000
s hg38.chr4_KI270925v1_alt    482866 71 +    555799 ATATTTGCCTCATGTGGACACTGGGAACCAGACCTCCTCCCACGTTGAAAGGAAATTATTCCATTTAAGAA
s panTro4.chr4             193195946 71 + 193495092 ATATTTGCCTCCTGTGGACACTGGGAATCAGACCTCCTCCCACGTTGAAAGGAAATTATTCCATTTAAGAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198274710 71 + 198332218 ATATTTGCCTCATGTGGACACTGGGAATCAGACCTCCTCCCACGTTGAAAGGAAATTATTCCATTTAAGAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113942929 71 + 115148730 ATATTTGCCTCATGTGGACACTGGGAATCAGACCTTCTCCCACGTTGGAAGGAAATTATTCCATTTAAGAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183857650 71 + 184069350 ATATTTGCCTCATGTGGACACTGGGAATCAGACCTCCTCCCACACTGAGAGGAAATTATTCCAGTTAAGAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189250871 71 + 189454096 ATATTTGCCTCATGTGGACACTGGGAATCAGACCTCCTCCCACGCTGAGAGGAAATTATTCCAGTTAAGAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178669162 71 + 178775436 ATATTTGCCTCATGTGGACACTGGGAATCAGACCTCCTCCTACGCTGAGAGGAAATTATTCCAGTTAAGAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135602021 71 + 135778131 ATATTTGCCTCATGTGGACACTGGGAATCAGACCTCCTCCCACGTTGAGAGGAAATTATTCCAGTTAAGAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190710655 71 - 190850796 ATATTTGCCTGATGTGGACACTGGGAATTAGACCTTCTCCCATGTTGAAAGGAAATGATTCCATTTAAGAA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87866217 54 - 129401213 ---------TCATGTGGACACTGTGATTTAGATATCCTCCCGTGCTGAAATCA---TTTTTCAttt-----
i mm10.chr8                C 0 C 0
s canFam3.chr16             18157875 71 -  59632846 ATATTTGCTTCATGTGAACACTAAAAATTAAACCCCCTCCCATGTTCAAAGAAAAATTTTCCATTTAAGAA
i canFam3.chr16            C 0 I 314

a score=13428.000000
s hg38.chr4_KI270925v1_alt    482937 4 +    555799 GAAA
s panTro4.chr4             193196017 4 + 193495092 GAAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198274781 4 + 198332218 GAAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113943000 4 + 115148730 GAAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183857721 4 + 184069350 GAAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189250942 4 + 189454096 GAAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178669233 4 + 178775436 GAAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135602092 4 + 135778131 GAAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190710726 4 - 190850796 GAAA
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87866271 0 - 129401213 C
e canFam3.chr16             18157946 314 -  59632846 I

a score=111461.000000
s hg38.chr4_KI270925v1_alt    482941 28 +    555799 ACAGTGTCTTTTAAAATA-AATGTAACTA
s panTro4.chr4             193196021 28 + 193495092 ACAGTGTCTTTTAAAATA-AATGTAACTA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198274785 28 + 198332218 ACAGTGTCTTTTAAAATA-AATGTAACTA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113943004 28 + 115148730 ACAGTGTCTTTTAAAATA-AATGTAACTA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183857725 28 + 184069350 ACAGTGTCTTTTAAAATA-AATGTAACTA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189250946 28 + 189454096 ACAGTGTCTTTTAAAATA-AATGTAACTA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178669237 28 + 178775436 acagtgtcttttaaaata-aatgtaacta
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135602096 28 + 135778131 ACAGTGTCTTTTAAAATA-AATGTAACTA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190710730 28 - 190850796 ACAGTGTCTTTTAAAGTA-AATGTAACTA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87866271 25 - 129401213 ----tatttttgagattataatataacta
i mm10.chr8                C 0 I 1437
s canFam3.chr16             18158260 28 -  59632846 gTAGTATCTTTTTAAGTA-AATGTTATAA
i canFam3.chr16            I 314 C 0

a score=195322.000000
s hg38.chr4_KI270925v1_alt    482969 55 +    555799 ----TTGAAAAGCACAAGGTGTCATAATTACCAGTAACATCCTTTTATGAGATAAAATG
s panTro4.chr4             193196049 55 + 193495092 ----TTGAAAAGCACAAGGTGTCATAATTACCAGTAACATCCTTTTGTGAGATAAAATG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198274813 55 + 198332218 ----TGGAAAAGCACAAGGTGTCATAATTACCAGTAACATCCTTTTATGAGATAAAATG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113943032 55 + 115148730 ----TTGAAAAGTACAAGGTGTCATAATTACCAGTAACATCCTTTTATGAGATAAAGTG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183857753 55 + 184069350 ----TTGAAAAGCACAAGGTGTCCTAATTACCAGTAACATCCTTTAATGAGATAAAATG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189250974 55 + 189454096 ----TTGAAAAGCACAAGGTGTCCTAATTACCAGTAACATCCTTTAATGAGATAAAATG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178669265 55 + 178775436 ----tTGAAAAGCACAAGGTGTCCTAATTACCAGTAACATCCTTTAATGAGATAAAATG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135602124 55 + 135778131 ----TTGAAAAGTACAAGGTGTCCTAATTACCAGTAACATCCTTTAATGAGATAAAATG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190710758 55 - 190850796 ----TTGAAAAGTACAAGGTGTCATAGTTACCAGTAACATCGTTTTATGAGATAAAATG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18158288 59 -  59632846 TAAATTGAACAGTACAAGATGTCATCATTACCATTTAATTACTTTTGTGAGATAAAATG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87866296 1437 - 129401213 I

a score=80980.000000
s hg38.chr4_KI270925v1_alt    483024 19 +    555799 TCTTAAC-AGGCATCAAGAA
s panTro4.chr4             193196104 19 + 193495092 TCTTAAC-AGGCATCAAGCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198274868 19 + 198332218 TCTTAAT-AGGCATCAAGAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113943087 19 + 115148730 TCTTAAC-GGGCATCAAGAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183857808 19 + 184069350 TCTTAAC-AGGCATCAAGAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189251029 19 + 189454096 TCTTAAC-AGGCATCAAGAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178669320 19 + 178775436 TCTTAAC-AGGCATCAAGAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135602179 19 + 135778131 TCTTAAC-AGGCATCAAGAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190710813 19 - 190850796 TCTTAAC-AGGCATCAAGAA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87867733 19 - 129401213 TCACAAC-AAGCATCAAGCA
i mm10.chr8                I 1437 C 0
s canFam3.chr16             18158347 20 -  59632846 TCCTAACTAGACATCAAGAA
i canFam3.chr16            C 0 I 165

a score=1544788.000000
s hg38.chr4_KI270925v1_alt    483043 424 +    555799  
s panTro4.chr4             193196123 423 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198274887 400 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113943106 423 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183857827 425 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189251048 425 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178669339 425 + 178775436  
i papAnu2.chr5             C 0 M 217
s chlSab2.chr7             135602198 425 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190710832 405 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87867752 435 - 129401213  
i mm10.chr8                C 0 C 0
s canFam3.chr16             18158532 490 -  59632846  
i canFam3.chr16            I 165 C 0

a score=1036943.000000
s hg38.chr4_KI270925v1_alt    483467 326 +    555799 TGTCACGAGCAGCCACACAGTGTGAAAAC--AGCCAACACTTCTCCTGTTGACTGACATCACTTCGCGGATTTAACTTCTGTGCTTCCAAGCCC-AACCTCTTATATCCTCTCTCCAGGCATTTTACATTTCACTTGCCACTCTCTACTCTCT-AAAAGCAGAGAAGCAGCTTTGCGAGAAGTAGTAAAATTATGAGAATAAGCTGGAAGA---AATGTTTTGGATAAAGAGCTGGTAACATTTAAGGCAAATTGCTCTGGTATAAATTCAGTCCTGTACTAGCACCATCTCATAGATCACAGAGTAGCCGGTGGGTGAAGTTGATGGGATAT
s panTro4.chr4             193196546 325 + 193495092 TGTCACAAGCAGCCACACAGTGTGAAAAC--AGCCAACGCTTCTCCTGTTGACTGACATCACTTCGCGGATTTAACTTCTGTGCTTCCAACCCC-AACCTC-TATATCCTCTCTCCAGGCATTTTACATTTTACTTGCCACTCTCTACTCTCT-AAAAGCAGAGAAGCAGCTTTGTGAGAAGTAGTAAAATTATGAGAATAAGCTGGAAGA---AATGTTTTGGATAAAGAGCTGGTAACATTTAAGGCAAATTGCTCTGGTATAAATTCAGTCCTGTACTAGCACCATCTCATAGATCACAGAGTAGCTGGTCGGTGAAGTTGATGGGATAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198275287 325 + 198332218 TGTTACAAGCAGCCACACAGTGTGAAAAC--AGCCAACACTTCTCCTGTTGACTGACATCACTTCACGGGTTTAACTTCTGTGCTTCCAAGCCC-AACCTC-TATATCCTCTCTCCAGGCATTTTACATTTTACTTGCCACTCTCTACTCTCT-AAAAGCAGAGAAGCAGCTTTGCGAGAAGTAGTAAAATTATGAGAATAAGCTGGAAGA---AATGTTTTGGATAAAGAGCTGGTAACATTTAAAGCAAATTGCTCTGGTATAAATTCAGTCCTGTACTAGCACCATCTCATAGATCACAGAGCAGCCGGTCATTGAAATTGATGGGATAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113943529 325 + 115148730 TGTCACAAGCAGCCACACAGTGTGAAAAC--AGCCAACGCTTCTCCTGTTGACTGACATCACTTCAAGGATTTAACTTCTGTGCTTCCAAGCCC-AACCTG-TATATCCTCTCCACAGGTATTTTACATATTACTTGTCACTCTCTACTCTCT-AAAAGCAGAGAAGCAGCTTTGCAAGAAGTAGTAAAATTATGAGAACAAGCTGGGAGA---AATGTTTTGGATAAAGAGCTGGTAACATTTAAAGCAAATTGCTCTGGTATAAATTCAGTCCTGTACTAGCACCATCTCATAGATCACAGAGTAGGCGGTCAGTGAAGTTGATGGGATAT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183858252 324 + 184069350 TGTCACAAGCAGCCACACAGTGTGAAAAC--AGCCAACACTTCTCCTGTTGACTGACATCATTTCACGGATTTAACTTTTGTGCTTCCAAG-CC-AACCTC-TGTATCCTCTATACAGGCATTTTACATTTCGCTTGTCACTCTCCACTCACT-AGAAGCAGAGAAGCAGCTTTTCGAGAAGTAGTAAAGTTATGAGAATAAGCTGGAAGA---AATGTTTCGGATAAAGAGCTGGTAACATTTAAAGCAAATTGCTCTGGCGTAAATTCAGTCCTGTACTAGCCCCATCTCATAGATCACAGAGTAGGCGGTTGGTGAAGTTGATGGGATAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189251473 324 + 189454096 TGTCACAAGCAGCCACACAGTGTGAAAAC--AGCCAACACTTCTCCTGTTGACTGACATCATTTCACGGATTTAACTTTTGTGCTTCCAAG-CC-AACCTC-TGTATCCTCTATACAGGCATTTTACATTTCGCTTGTCACTCTCCACTCTCT-AGAAGCAGAGAAGCAGCTTTTCGAGAAGTAGTAAAGTTATGAGAATAAGCTGGAAGA---AATGTTTCGGATAAAGAGCTGGTAACATTTAAAGCAAATTGCTCTGGCGTAAATTCAGTCCTGTACTAGCCCCATCTCATAGATCACAGAGTAGGCGGTTGGTGAAGTTGATGGGATAT
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135602623 325 + 135778131 TGTCACAAGCAGCCACACAGTGTGAAAAC--AGCCAACACTTCTCCTGTTGACTGACATCATTTCACGGATTTAACTTTTGTGCTTCCCAGCCC-AACCTC-TGTATCCTCTATACAGGCATTTTACATTTCGCTTGTCACTCTCCACTCTCT-AGAAGCAGAGAAGCAGCTTTGCGAGAAGTAGTAAAATTATGAGAATAAGCTGGAAAA---AATGTTTCGGATAAAGAGCTGGTAACATTTAAAGCAAATTGCTCTGGCGTAAATACAGTCCTGTACTAGCCCCATCTCATAGATCACAGAGTACGCGGTTGGTGAAGTTGATGGGATAT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190711237 320 - 190850796 TGTCAC-AGCAGCCTCACAGTGTGAAAACAGAGCCAACACTT---CTGCTGACCAACAT---TTCACAGATTTAACTTTCGTGCTTTCAAGCCC-AACCTC-TATATCCTCTGTATAGGCATTGTACATTTTACTTGTCACTCCCCATTCTCT-AAAAGCCGAGAAGCAGCTTTGTGAGAAGTTGTAAAATTATGAGAATAAGCTGGAAGA---AATGTTTTGGATAAAGAGCTGGTAACATTTAAAGCAAATTGCTCTGGTGTAAATTCAGTCCTGTACCAGCACCATCTCATAGATCACAGAGAAGACGGCTGGTGAAGTTGATGGGATAT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87868187 328 - 129401213 TCTTGC-AGGAGCCACATGGTGT-CACGC--AGCCCGTTCTTCCCATATTAACTGATGTCACTGTGTGGATTTAACGCCTGCGCAGTGAAATCCAAACTTC-GGCACCCTCGATATAGACATTTCACATTTTACTTGTCTCCCTTTATTCTCTGAAAAACAAGTTATCAGCTGTGCAAGATGTAGTAAAATTCTGTGAATAAACTAGAAGAAGCAATGTTTTGGATTAAGAGCTGGTAACATTCACAGCAAATTACTGTGGTATAAATTCAGGCCTATATCAGAAACTTCTCATAGATCACAGGGTAGATGGCGGGTGACGTTGATGGGATAT
i mm10.chr8                C 0 C 0
s canFam3.chr16             18159022 322 -  59632846 TGTTGC-AGCAGCCACACAGTGTGAAAACAGAGCCAAC-CTTCTCCCGTTAGCCTGCAAAATTTCATGGGCTTAACTTTTGTGTTTCCAAACTC-AACTTC-TATACCCTGCATATAGGCATTTTACATTTTAGTTGTCACTCCCTATTCCCT-AAAAGCAGGGAAGCAACTTTGTGA---GTAGTAAAACTATGAGAATAAACTGGAAAA---AACATTTTGGATAAAATGCTGGTAACATTTAAAGCAAATTGCTCTGGTATGAATTCACCCCTGTACTAGTGCCATCTCATAGAACACAGAGTAGATGGTCGGTGAAGTTGATGGGATAT
i canFam3.chr16            C 0 C 0
e papAnu2.chr5             178669764 217 + 178775436 M

a score=1870612.000000
s hg38.chr4_KI270925v1_alt    483793 442 +    555799 TGATTCCAGCAGGAAAATAAAGGGCTATAAAACAAAAGATGATTAACACGAAATCCTTGAGTAAAGCAAAGTCTTAATAGACTGGGAGCTGTTAAATCAA----AGAGTGGGTGAGAGGACTGGGCTTTCAGATCACTTACAACTGAATT-CTTTTCATTGTGTATTAAAATTCTCCTGTGTGTTTTTACTTTCCTGTATATTATCAATCCATATTCCTCCAGTGAAAAACATCTGAAATT-GCATGTGGGGAAAAGGAACCAAATCCGGGACACATCATCAATCAGAAAGAAGGAAACTCACAAAGCAATGGCAATCAGGGCCTTAAAAACCTATAAATACTGTCAG-AAAATGAATA---TTT-TTCTATTTCTTTCATTTCATTAAGTCCCACTAATGTTTCTCTAC-ATACCACGTGCACCTCTCTTTTAATAAATTCTGCTGCAATGCA
s panTro4.chr4             193196871 442 + 193495092 TGATTCCAGCAGGAAAATAAAGGGCTATAAAACAAAAGATGATTAACATGAAATCGTTGAGTAAAGCAAAGTCTTAATAGACTGGGAGTTGTTAAATGAA----AGAGTGGGTGAGAGGACTGGGCTCTCAGATCACTTACAACTGAATT-CTTTTCATTGTGTATTAAAATTCTCCTGTGTGTTTTTACTTTCCTGTATATTATCAATCCATATTCCTCCAGTGAAAAACATCTGAAATT-GCATGTGGGGAAAAGTAACCAAATCCAGGACACATCATCAATCAGAGAGAAGGCAACTCAGAAAGCAATGGCAATCAGGGCCTTAAAAACCTATAAATAATGTCAG-AAAATGAATA---TTT-TTTTATTTCTTTCATTTCATTAAGTCCCACTAATGTTTCTCTAC-ATACCATGTGCACCTCTTATTTAATAAATGCTGCTGCAATGCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198275612 442 + 198332218 TGATTCCAGCAGGAAAATAAAGGGCTATAAAACAAAAGATGATTAACATGAAATCATTGAGTAAAGCAAAGTCTTAATAGACTGGGAGTTGTTAAATGAA----AGAGTGGGTGAGAGGACTGGGCTCTCAGATCACTTACAACTGAATT-CTTTTCATTGTGTATTAAAATTCTCCTGTGTGTTTTTACTCTCATGTATATTACCAATCCATATTCCCCCAGTGAAAAACATCTGAAATT-GCATGTGGGGAAAAGTAACCAAATCCAGGACACATCATCAATCAGAGACAAGGCAACTCAGAAAGCAATGGCAATCAGGGCCTTAAAAACCTATAAATACTGTCAG-AAAATGAATA---TTT-TTTTATTACTTTCATGTCATAAAGTGCCACTAATGTTTCTCTAC-ATACCATGTGCACCTCTTTTTTAATAAATGCTGCTGCAATGCA
i ponAbe2.chr4             C 0 I 673
s nomLeu3.chr7b            113943854 442 + 115148730 TGATTCCAGCAGGAAAATAAAGGGCTATAAAACAAAAGATGATTAACATGAAATCGTTGAGCAAAGCAAAGTCTTAATAGACTGGGAGTTGTTAAATGAA----AGAGTGGGTGAGAGGACTGGGCTCTCAGATCGCTTACAACTGAATT-CTTTTCATTGTGTATTAAAATTCTCCTGTGTGTTTTTACTCTCCTGTATATTATCAATCCATATTCCCCCAGTGAAAAACATCTGAAATT-GCATGTGGGGAAAAGTAACCAAATCCAGGACACATCATCAATCAGAGAGAAGGCAACTCAGAAAGCAATGTCAATCAGGGCCTTAAAAACCTATAAATATTGTCAG-AAAATGAATA---TTT-TTTTATTTCTTTCATTTCATAAAGTCCCACTAATGTTTCTCTAC-ATACCATGTGCACCTCTTTTttaataaatgctgccacaatgca
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183858576 441 + 184069350 CGATTCCAGCAGGAAAATAAAGGGCTATAAAACAAAAGATGATTAACATGAAATCGTTGAGTAAAGCAAAGTCTTAATAGACTGGGAGTTGTTAAATGAA----AGAGTGGGTGAGAGGACTGGGCTCTCAGATCGCTTACAACTGAATT-CTTTTCATTGTGTATTAAAATTCTCCTGTGTGTTTTTACTCTCCTGTATATTATCAATCCGTATTCACCCCGTGAAAAACATCTGAAATT-GCATGTGGGGAAAAGTAACCAAATCCAGGACACATCATCAATCAGAGCGAAGGCAACTC--AAAGCAACAGCAACCGGGGCCTTAAAAACCTATAAATACTGTCCG-AAAACGAAGA--TTTT-TTTCATTTCTTTCATTTCACAAAGTCCCACTAATGTTTCTCTAC-ACACCATGTGCAACTCTTTCTTAATAAATTCTGCTGCAATGCA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189251797 440 + 189454096 CGATTCCAGCAGGAAAATAAAGGGCTATAAAACAAAAGATGATTAACATGAAATCGTTGAGTAAAGCAAAGTCTTAATAGACTGGGAGTTGTTAAATGAA----AGAGTGGGTGAGAGGACTGGGCTCTCACATCGCTTACAACTGAATT-CTTTTCATTGTGTATTAAAATTCTCCTGTGTGTTTTTACTCTCCTGTATATTATCAATCCGTATTCACCCCATGAAAAACATCTGAAATT-GCATGTGGGGAAAAGTAACCAAATCCAGGACACATCATCAATCAGAGCGAAGGCAACTC--AAAGCAACGGCAACCGGGGCCTTAAAAACCTATAAATACTGTCCG-AAAACTAAGA---TTT-TTTCATTTCTTTCATTTCACAAAGTCCCACTAATGTTTCTCTAC-ACACCATGTGCAACTCTTTCTTAATAAATTCTGCTGCAATGCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178669981 440 + 178775436 TGATTCCAGCAGGAAAATACAGGGCTATAAAACAAAAGATGATTAACATGAAATCGTTGAGTAAAGCAAAGTCTTAATAGACTGGGAGTTGTTAAATGAA----AGAGTGGGTGAGAGGACTGGGCTCTCAGATCGCTTACAACTGAATT-CTTTTCATTGTGTGTTAAAATTCTCCTGTGTGTTTTTACTCTCCTGTATATTATCAATCCGTATTCACCCCGTGAAAAACATCTGAAATT-GCATGTGGGGAAAAGTAACCAAATCCAGGATACATCATCAATCAGAGCGAAGGCAACTC--AAGGCAACGGCAACCGGGGCCTTAAAAACCTATAAATACTGTCcg-aaaatgaaga---ttt-tttcatttctttcatttcacaaAGTCCCACTAATGTTTCTCTAC-ACACCATGTGCAACTCTTTCTTAATAAATTCTGCTGCAATGCA
i papAnu2.chr5             M 217 C 0
s chlSab2.chr7             135602948 437 + 135778131 TGATTCCAGCAGGAAAATAAAGGGCTATAAAACAAAAGATGATTAACATGAAATCGTTGAGTAAAGCAAACTCTTAATAGACTGGGAGTTGTTAAATGAA----AGAGTGGGTGAGAGGACTGGGCTCTCAGATCGCTTACAACTGAATT-CTTTTCATTGTGTATTAAAATTCTCCTGTGTGTTTTTACTCTCCTGTATATTATCAATCCGTATTCACCCCGTGAAAAACATCTGAAATT-GCATGTGGGGAAAAGTAACCAAATCCAGGACACATCATCAATCAGAGCAAAGGCAACTC--AAAGCAACGGCAACCAGGGCCTTAAAAACCTATAAATACTGTCCG-AAAACGAAGA---TTG-TTTCATTTCTTTCGTTTCACAAAGTCCCACTAATGTTTCTCTAC-ATACCATGTGCAACTCTTTCTTAATAAATT---CTGCAATGCA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190711557 444 - 190850796 TGATTCCACCAGGAAAATAAAGAGCTATGAAACAAAAGATGATTAACAAGAAATCGTTGAGTAAAGCAAATTCTTAATAGACTGGGAGTTGTTAAAT--A----AGAGTGGGTGAGAGGATTGGACTCTCAGATCGCTTACAACTGAATT-CTTTTCATTGCGTATTAAAATTCTCCTGTGTGTTCTTACTCTCCTGTATATTATCAATCCATATTCACCCAGTGAAAAACATCTGAAATT-GCATGTGGGGAAAAGTAACCAAATCCAGGACACATCATCAATCAGAGAGAAGGCAACTCAGAAAGCAATGGCAATC-GGGCCTTAAAAACCTATAAATACTGTCAGAAAAATGAAGATTTTTT-TTTTATTTCTTTCACTTCATAATATCCCACTAATGTTTTTCTACTATACCATGTGCACCTCTTTTAAAATAAATGTTGCTGCAATGCA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87868515 440 - 129401213 TGATTCCGGCAAGAAAATAAAGGGCTATAAAACAAAAGATGATTAACATGAAATCGTTGAGTGAAGCGAAGCCTTAATAGACCAGGAGTTCTTAAATAAA----ACAGTGAGTAAGGGGACTGTGCTCTCAGATCACTTACAACTGAAAC-CTTCTCACCATATATTAAAACTCTCCCGTGTGTTTTTACTTTCCTGCATATTATCAATCCGTATTCACCCACTGAAAAACATCTGAAATTAACATGTGGGG-AGAGTAACCATGTCTGGGACACATCATCAGTCAAAGGAAAAGCACCCCGAAAGCCACTGGCAATCGGGACCTTACAAA-CTATAAATACTGTCAG-AAAATCAA-A---CGT-GTCTATTCCCTTCATTTCACAGAGTCCCACTAATGTTTCACTAC-ATACCATGTGCATCTTGTTTTTAATAAATGCTGCTGCAGTACA
i mm10.chr8                C 0 I 1
s canFam3.chr16             18159344 450 -  59632846 TGATTCTAGCAGGAAAATAAAAGGCTATAAAACAAAAGATGATTAACATGAAATCGTTGAGTGAAGCAGAGTCTTAATAGACTGGGAGTTGTTAAATAAAACAGAGAGTGGGTAAAAGAACCAAGCTCTCAGATCGCTTATAATGAAATTCCTTTTCATTACATATTAAAATTCTCCTGTGTGTTTTTACTTTCCTATATATTATCAATTCATATTCACCCACTGAAAAACACCTGAAATTAACATGTGGGCAAAAGTAACCAAATCTGGGACACATCATCAATCAGAGGGGAGGCAATTCAGAAAGTAAAGGCATTTAGGACCTTAGAAACCTATAAATACTGTCAG-AAAATAAAGT---TTTACTTTATTTCTTTCATTTCACAAAGCCCCACTAACGTTTTGCTACTATATCATGTACAACTTTTTTTTTAGAAACATTGCTGCAATGCA
i canFam3.chr16            C 0 I 1

a score=418861.000000
s hg38.chr4_KI270925v1_alt    484235 150 +    555799 CGTTACAGGTTGATTTGTTGCTTAAAATATGCAGTACTCAATGCACAGATGTACTTCTAAAATATTCTTCTAGCAAGTTTCCAGAGCCAAGTAGTTTTTTAG--------TCAAAATTACTCTACAAAGGAAATGCACCCCTGATTCCCTCCACCCTC
s panTro4.chr4             193197313 150 + 193495092 CGTTACAGGTTGATTTGTTGCTTAAAATATGCAGTACTCAATGAACAGATGTACTTCTAAAATATTCTTGTAGCAAGTTTCCAGAGCCAAGTAGTTTTTTGG--------TCAAAATTACTCTACAAAGGAAATGCACCCCTGATTCCCTCCACCCTC
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113944296 150 + 115148730 ctttacaggttgatttgttgcttaaaaTATGCAGCACTCAATGAACAGATATACTTCTAAAATATTCTTGTAGCAAATTTCCGGAGCCAAGTAGTTTTTTGG--------TCAAAATTACTCTACAAAGGAAATGCACCCCTGATTCCCTCCACCCTC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183859017 150 + 184069350 GTTTACAGGCTGATTTGTTGCTTAAAATATGCAGTACTCAACAAACAGATATATTTCTAAAATACTCTTGTAGTAAATTTCCAGAGCAAAGTAGTTTTTTGG--------CCAAAATTACTCTACGAAGGAAATAAACACCTTATTCCCTCCATCCTC
i rheMac3.chr5             C 0 I 660
s macFas5.chr5             189252237 150 + 189454096 GTTTACAGGCTGATTTGTTGCTTAAAATATGCAGTACTCAACAAACAGATATATTTCTAAAATACTCTTGTAGTAAATTTCCAGAGCAAAGTAGTTTTTTGG--------CCAAAATTACTCTACGAAGGAAATAAACACCTTATTCCCTCCATCCTC
i macFas5.chr5             C 0 I 2
s papAnu2.chr5             178670421 150 + 178775436 GTTTACAGGCTGATTTGTTGCTTAAAATATGCAGTACTCAACGAACAGATAAATTTCTAAAATACTCTTGTAGTAAATTTCCAGAGCAAAGTAGTTTTTTGG--------CCAAAATTACTCTACGAAGGAAATAAACACCTTATTCCCTCCATCCTC
i papAnu2.chr5             C 0 I 2
s chlSab2.chr7             135603385 150 + 135778131 GTTTACAGGCTGATTTGTTGCTTAAAATATGCAGTACTCAACGAACAGATATATTTCTAAAATACTCTTGTAGTAAATTTCCAGAGCAAAGTAGTTTTTTGG--------CCAAAATTACTCTACGAAGGAAATAAACACCTTATTCCCTCCATCCTC
i chlSab2.chr7             C 0 I 2
s calJac3.chr3             190712001 150 - 190850796 GTATACAGGTTGATTTGTTGCTTAAAATGTGCAGTGCTCAGTGAACAGATCTATTTCTAAAATATTCTTGTAGTAAATTTCCAGAGCAAAATAGTTTTTTGC--------CCAAAATCACTCTGCAAAGAAAACACACTCCTTATTCCTCCCACCCTA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87868956 145 - 129401213 TTTTATGAGTTGATTTGTTGCTTAAAATGCACAGTACTCAACAAACAGATATATCACTAAGATGTGC---AAGTAAATTTCTAGAACCAAGGGG------GGGGAGATCAAAAAAATCATTCTACCGAAGAGGCACACTCCTT----CTCCCACATTC
i mm10.chr8                I 1 C 0
s canFam3.chr16             18159795 127 -  59632846 TTTTACGAGTTGATTTGTTGTTTAAAATATGCAGTGTTCAATGAACAGATATATTTCTAAAGTATTCTTCAA---------------------GTTTTTCAG--------TCAAAGTCACTCTACCAAGGAAACACACTGCGCATGTCTTTCCCTC--
i canFam3.chr16            I 1 C 0
e ponAbe2.chr4             198276054 673 + 198332218 I

a score=-2765.000000
s hg38.chr4_KI270925v1_alt    484385  9 +    555799 TATCAACA--C---
s panTro4.chr4             193197463  9 + 193495092 TATCAACA--C---
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113944446 11 + 115148730 TATGAACACGC---
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189252389  9 + 189454096 TGCAGATG--C---
i macFas5.chr5             I 2 C 0
s papAnu2.chr5             178670573  9 + 178775436 TGCGGATg--c---
i papAnu2.chr5             I 2 C 0
s chlSab2.chr7             135603537  9 + 135778131 TGCAGATG--C---
i chlSab2.chr7             I 2 C 0
s calJac3.chr3             190712151  9 - 190850796 CACGCACA--C---
i calJac3.chr3             C 0 I 3
s mm10.chr8                 87869101  9 - 129401213 CGTCCATG--T---
i mm10.chr8                C 0 I 2
s canFam3.chr16             18159922  7 -  59632846 -----ACA--GGAT
i canFam3.chr16            C 0 C 0
e rheMac3.chr5             183859167 660 + 184069350 I
e ponAbe2.chr4             198276054 673 + 198332218 I

a score=51967.000000
s hg38.chr4_KI270925v1_alt    484394 34 +    555799 ACACACACCACCA--------CCACCACATCACCAATACCAC
s panTro4.chr4             193197472 34 + 193495092 ACACAcaccacct--------ccaccacatcaccaataccac
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113944457 34 + 115148730 ACACAcaccacca--------ccaccacatcaccaatgccgc
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189252398 42 + 189454096 Acacacactatcacatcacagccaccacatcaccactgctgc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178670582 42 + 178775436 acacacaccatcacatcacagccaccacatcaccactgctgc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135603546 42 + 135778131 Acacacaccatcacatcacagccaccacatcaccactgccac
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87869112 34 - 129401213 GCATGCACTACCA--------CCCCATTGTCACCGTCACTGC
i mm10.chr8                I 2 C 0
s canFam3.chr16             18159929 32 -  59632846 ACACAcaccacca--------ccaccac--caccaATTCCAA
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190712160  3 - 190850796 I
e rheMac3.chr5             183859167 660 + 184069350 I
e ponAbe2.chr4             198276054 673 + 198332218 I

a score=7362.000000
s hg38.chr4_KI270925v1_alt    484428 7 +    555799 AAGCACA
s panTro4.chr4             193197506 7 + 193495092 aagcaca
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113944491 7 + 115148730 tagtatg
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189252440 7 + 189454096 gagcaca
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178670624 7 + 178775436 gagcaca
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135603588 7 + 135778131 gagcaca
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87869146 7 - 129401213 CACCACA
i mm10.chr8                C 0 I 296
e canFam3.chr16             18159961 0 -  59632846 C
e calJac3.chr3             190712160 3 - 190850796 I
e rheMac3.chr5             183859167 660 + 184069350 I
e ponAbe2.chr4             198276054 673 + 198332218 I

a score=11580.000000
s hg38.chr4_KI270925v1_alt    484435 13 +    555799 CACATCACC---ACCA
s panTro4.chr4             193197513 13 + 193495092 cacaccagc---atca
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113944498 13 + 115148730 cacaccacc---aaca
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189252447 13 + 189454096 cacaccatc---aaca
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178670631 13 + 178775436 cacaccatc---aaca
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135603595 16 + 135778131 cacaccaccatgacca
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87869153 296 - 129401213 I
e canFam3.chr16             18159961  0 -  59632846 C
e calJac3.chr3             190712160  3 - 190850796 I
e rheMac3.chr5             183859167 660 + 184069350 I
e ponAbe2.chr4             198276054 673 + 198332218 I

a score=33096.000000
s hg38.chr4_KI270925v1_alt    484448 76 +    555799 CCACATCACCACTG-CACTAGCACACACACCACCAT---CATCACATCACCACTG-CACTAGCACACACACCACCACCACC
s nomLeu3.chr7b            113944511 61 + 115148730 ccacatcaccactaccactaacacacacatcaccac---tac--------------cactaacacaca---catcaccacc
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189252460 73 + 189454096 ccacatcaccacggccgatagtacgcacatcaccatgaccatcacatcaccactgccgctaggaaacacacca--------
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178670644 81 + 178775436 ccacatcaccacagccgatactacgcacatcaccatgaccatcacatcaccactgccgctaggaaacacaccagtaccacc
i papAnu2.chr5             C 0 I 6
s chlSab2.chr7             135603611 78 + 135778131 tcacatcaccactgccgctagtacacataccaacat---cacaacatcaccactgctgctaatacacacaccaccaccacc
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87869153 296 - 129401213 I
e canFam3.chr16             18159961  0 -  59632846 C
e calJac3.chr3             190712160  3 - 190850796 I
e rheMac3.chr5             183859167 660 + 184069350 I
e ponAbe2.chr4             198276054 673 + 198332218 I
e panTro4.chr4             193197526  0 + 193495092 C

a score=21098.000000
s hg38.chr4_KI270925v1_alt    484524 33 +    555799 ACATCACCACTG-CACTAGTACACACACCACC---AC
s nomLeu3.chr7b            113944572 37 + 115148730 acatcaccactgcctctagcacacacatcaccacgac
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183859827 34 + 184069350 ACATCACCACTGCCACTAGTACACACACCACC---AC
i rheMac3.chr5             I 660 I 73
s macFas5.chr5             189252533 10 + 189454096 ------------------------gtaccacc---ac
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178670731 34 + 178775436 acatcaccattgccgctagtacacataccaac---ac
i papAnu2.chr5             I 6 C 0
s chlSab2.chr7             135603689 34 + 135778131 acatcaccactgccacgagcacacacaccacc---aa
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87869153 296 - 129401213 I
e canFam3.chr16             18159961  0 -  59632846 C
e calJac3.chr3             190712160  3 - 190850796 I
e ponAbe2.chr4             198276054 673 + 198332218 I
e panTro4.chr4             193197526  0 + 193495092 C

a score=9361.000000
s hg38.chr4_KI270925v1_alt    484557 13 +    555799 CATCACATCACCA
s nomLeu3.chr7b            113944609 13 + 115148730 catgaaatcacca
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189252543 13 + 189454096 caccacatcacca
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178670765 13 + 178775436 cacaacatcacca
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135603723 13 + 135778131 caccacatcacca
i chlSab2.chr7             C 0 I 549
e mm10.chr8                 87869153 296 - 129401213 I
e canFam3.chr16             18159961  0 -  59632846 C
e calJac3.chr3             190712160  3 - 190850796 I
e rheMac3.chr5             183859861 73 + 184069350 I
e ponAbe2.chr4             198276054 673 + 198332218 I
e panTro4.chr4             193197526  0 + 193495092 C

a score=5338.000000
s hg38.chr4_KI270925v1_alt    484570 23 +    555799 CTG-CACTAGTACAC---ACACCATCA
s nomLeu3.chr7b            113944622 27 + 115148730 ctgccgctagtacacccatcaccatga
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189252556 24 + 189454096 ctgccgctagtacac---ataccaaca
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178670778 21 + 178775436 ctgctgctaatacac---acacca---
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87869153 296 - 129401213 I
e canFam3.chr16             18159961  0 -  59632846 C
e calJac3.chr3             190712160  3 - 190850796 I
e chlSab2.chr7             135603736 549 + 135778131 I
e rheMac3.chr5             183859861 73 + 184069350 I
e ponAbe2.chr4             198276054 673 + 198332218 I
e panTro4.chr4             193197526  0 + 193495092 C

a score=7338.000000
s hg38.chr4_KI270925v1_alt    484593 38 +    555799 CCATCACATCACCACTG-CACTAGTACACACACCATCAC
s nomLeu3.chr7b            113944649 39 + 115148730 ccatgacatcaccactgcctctagtacacacatcaccac
i nomLeu3.chr7b            C 0 I 2
s macFas5.chr5             189252580 36 + 189454096 ccacaacatcaccactg---ctaatacacacaccaccac
i macFas5.chr5             C 0 C 0
e mm10.chr8                 87869153 296 - 129401213 I
e canFam3.chr16             18159961  0 -  59632846 C
e calJac3.chr3             190712160  3 - 190850796 I
e chlSab2.chr7             135603736 549 + 135778131 I
e papAnu2.chr5             178670799  0 + 178775436 C
e rheMac3.chr5             183859861 73 + 184069350 I
e ponAbe2.chr4             198276054 673 + 198332218 I
e panTro4.chr4             193197526  0 + 193495092 C

a score=38341.000000
s hg38.chr4_KI270925v1_alt    484631 762 +    555799  
s macFas5.chr5             189252616 781 + 189454096  
i macFas5.chr5             C 0 C 0
e mm10.chr8                 87869153 296 - 129401213 I
e canFam3.chr16             18159961   0 -  59632846 C
e calJac3.chr3             190712160   3 - 190850796 I
e chlSab2.chr7             135603736 549 + 135778131 I
e papAnu2.chr5             178670799   0 + 178775436 C
e rheMac3.chr5             183859861  73 + 184069350 I
e nomLeu3.chr7b            113944688   2 + 115148730 I
e ponAbe2.chr4             198276054 673 + 198332218 I
e panTro4.chr4             193197526   0 + 193495092 C

a score=0.000000
s hg38.chr4_KI270925v1_alt    485393 239 +    555799 ATCACCACTGCACTAGCACACACACCACCATCACCACATCACCACTGCACTAGTACACACACCACCACCACCACATCACCACTGCACCAGTACACACACCACCACCACATCACCACTGCACTAGCACACACACCATCACCACATCACCACTGCACTAGCACACACACACCATCACCACATCACCACTGCACTAGTACACACACCATCACATCACCACTGCACTAGTACACACACCATCA
e mm10.chr8                 87869153 296 - 129401213 I
e canFam3.chr16             18159961   0 -  59632846 C
e calJac3.chr3             190712160   3 - 190850796 I
e chlSab2.chr7             135603736 549 + 135778131 I
e papAnu2.chr5             178670799   0 + 178775436 C
e macFas5.chr5             189253397   0 + 189454096 C
e rheMac3.chr5             183859861  73 + 184069350 I
e nomLeu3.chr7b            113944688   2 + 115148730 I
e ponAbe2.chr4             198276054 673 + 198332218 I
e panTro4.chr4             193197526   0 + 193495092 C

a score=20949.000000
s hg38.chr4_KI270925v1_alt    485632 418 +    555799 CCACCACATCACCACTGC-ACTAGCACACACAC----ACCATCACCACATCACCACTGC-ACTAGTACACACA---------CCATCACATCACCACTGC-ACTAGTACACACACCATCACCACATCACCACTGCACTAGTACACACACCACCACCACATCACCACTGC-ACTAGTACACACACCACCATCACCACATCACCACTGC-ACTAATACACACACCATCACCACATCACCACTGC-ACTAGCACACACACCACCATCA---CCACATCACCACTGCA-CTAGTACACACACCACCACCACCACATCACCACTG-CACCAGTACACACACCACCACCA---CATCACCACTGCACTAGCA-CACACACCATCACCACCACATCACCACTG-CACTAGCACACACAC----ACCATCACCACATCACCACTGC-ACTAGTACACACA
s papAnu2.chr5             178670799 421 + 178775436 ccaccacatcaccactgccacgagcacacacaccaccatcaccaccacatcaccacggccgatagtacgcacatcaccatgaccatcacatcaccactgccactaggaaacacacca----------------------gtac---caccaccaccacatcaccactactgctagtacacataccaacatcacaacatcaccactgctgctaatacacacaccaccaccacatcaccactgccaagagcacacacaccaccatcaacaccacatcaccactgcagctagtacacacatcaccact----cattaccactgacactggcacacacacaaccaccagcacatcacaact--tccagtaacaaaaaccaccaccaccacatcacctctgacactagcacacacaccaccaccaccagcacatcaccactgctgctactacacaca
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87869153 296 - 129401213 I
e canFam3.chr16             18159961   0 -  59632846 C
e calJac3.chr3             190712160   3 - 190850796 I
e chlSab2.chr7             135603736 549 + 135778131 I
e macFas5.chr5             189253397   0 + 189454096 C
e rheMac3.chr5             183859861  73 + 184069350 I
e nomLeu3.chr7b            113944688   2 + 115148730 I
e ponAbe2.chr4             198276054 673 + 198332218 I
e panTro4.chr4             193197526   0 + 193495092 C

a score=6580.000000
s hg38.chr4_KI270925v1_alt    486050 68 +    555799 CCATCACATCACCACTGC-ACTAGTACACACACCATCACCACCA---CATCACCACTGC-ACTAGCACACACA
s nomLeu3.chr7b            113944690 73 + 115148730 ccatgacatcaccactgcctctagtacacacatcaccacgaccatgacatcaccactgcctctagtacacaca
i nomLeu3.chr7b            I 2 I 1
s papAnu2.chr5             178671220 47 + 178775436 --------ccaccacaac---------------cacgaccacca---catcaccaTTGCCGCtactacacata
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87869153 296 - 129401213 I
e canFam3.chr16             18159961  0 -  59632846 C
e calJac3.chr3             190712160  3 - 190850796 I
e chlSab2.chr7             135603736 549 + 135778131 I
e macFas5.chr5             189253397  0 + 189454096 C
e rheMac3.chr5             183859861 73 + 184069350 I
e ponAbe2.chr4             198276054 673 + 198332218 I
e panTro4.chr4             193197526  0 + 193495092 C

a score=14045.000000
s hg38.chr4_KI270925v1_alt    486118 37 +    555799 -CACCATCACC---ACATCACCACTGCA-CTAGTACACACAC
s ponAbe2.chr4             198276727 37 + 198332218 -caccaccacc---acatcaccactgca-ctagtacacacac
i ponAbe2.chr4             I 673 I 6
s nomLeu3.chr7b            113944764 41 + 115148730 -caccatgaccatgacatcaccactgcctctagtacacacat
i nomLeu3.chr7b            I 1 I 9
s papAnu2.chr5             178671267 39 + 178775436 ccaacattaca---acatcaccactgccactagtacacacac
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87869153 296 - 129401213 I
e canFam3.chr16             18159961  0 -  59632846 C
e calJac3.chr3             190712160  3 - 190850796 I
e chlSab2.chr7             135603736 549 + 135778131 I
e macFas5.chr5             189253397  0 + 189454096 C
e rheMac3.chr5             183859861 73 + 184069350 I
e panTro4.chr4             193197526  0 + 193495092 C

a score=13935.000000
s hg38.chr4_KI270925v1_alt    486155 28 +    555799 CATCACATCA---CCACTG-CA----CTAGTACACA
s panTro4.chr4             193197526 28 + 193495092 catcacatca---ccactg-ca----ctagtacaca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198276770 28 + 198332218 caccacatca---ccactg-ca----ctagtacaca
i ponAbe2.chr4             I 6 C 0
s nomLeu3.chr7b            113944814 29 + 115148730 catgacatca---ccactgccg----ctagtacaca
i nomLeu3.chr7b            I 9 C 0
s papAnu2.chr5             178671306 34 + 178775436 caccacaacaagcacattg-caacttccagta-aca
i papAnu2.chr5             C 0 I 7
e mm10.chr8                 87869153 296 - 129401213 I
e canFam3.chr16             18159961  0 -  59632846 C
e calJac3.chr3             190712160  3 - 190850796 I
e chlSab2.chr7             135603736 549 + 135778131 I
e macFas5.chr5             189253397  0 + 189454096 C
e rheMac3.chr5             183859861 73 + 184069350 I

a score=22629.000000
s hg38.chr4_KI270925v1_alt    486183 28 +    555799 CACCATCACCAC------ATCACCACTGCA-CT-AG
s panTro4.chr4             193197554 34 + 193495092 caccatcaccaccaccacatcaccactgca-ct-ag
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198276798 28 + 198332218 caccaccaccac------atcaccactgca-ct-ag
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113944843 35 + 115148730 caccaccactatcatcacatcaacactgcctca-ag
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178671347 28 + 178775436 cactaccaccac------accaccgctgcc-cc-ag
i papAnu2.chr5             I 7 C 0
s chlSab2.chr7             135604285 29 + 135778131 caccaccaccac------accaccactgcc-cctag
i chlSab2.chr7             I 549 C 0
e mm10.chr8                 87869153 296 - 129401213 I
e canFam3.chr16             18159961  0 -  59632846 C
e calJac3.chr3             190712160  3 - 190850796 I
e macFas5.chr5             189253397  0 + 189454096 C
e rheMac3.chr5             183859861 73 + 184069350 I

a score=16437.000000
s hg38.chr4_KI270925v1_alt    486211 9 +    555799 TACACACAC
s panTro4.chr4             193197588 9 + 193495092 tacatacac
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198276826 9 + 198332218 tacacacac
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113944878 9 + 115148730 cacacacac
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178671375 9 + 178775436 tacacacac
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135604314 9 + 135778131 tacacacac
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190712163 9 - 190850796 TACACAcac
i calJac3.chr3             I 3 C 0
e mm10.chr8                 87869153 296 - 129401213 I
e canFam3.chr16             18159961 0 -  59632846 C
e macFas5.chr5             189253397 0 + 189454096 C
e rheMac3.chr5             183859861 73 + 184069350 I

a score=12269.000000
s hg38.chr4_KI270925v1_alt    486220 12 +    555799 CACCACCAC---CAC
s panTro4.chr4             193197597 14 + 193495092 caccatcac-attac
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198276835 10 + 198332218 caccaccac-----c
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113944887 12 + 115148730 caccaccac---cac
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183859934  9 + 184069350 caccaccac------
i rheMac3.chr5             I 73 C 0
s papAnu2.chr5             178671384  9 + 178775436 caccaccac------
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135604323  9 + 135778131 caccaccac------
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190712172 15 - 190850796 caccaccatcgacac
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87869153 296 - 129401213 I
e canFam3.chr16             18159961  0 -  59632846 C
e macFas5.chr5             189253397  0 + 189454096 C

a score=116681.000000
s hg38.chr4_KI270925v1_alt    486232 41 +    555799 ATCACCACTGCCGCTAGCACTGCCACTACCTCAAT-CCCACT
s panTro4.chr4             193197611 42 + 193495092 atcaccactgccgctagcactgccactaccTCAATTCCCACT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198276845 42 + 198332218 accaccacTGCTGCTAGTACTGCCACAACCTCAGTTCCCACT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113944899 42 + 115148730 atcaccactgccactagcactgccactacctccattcccact
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183859943 42 + 184069350 atcaccactgccgccagcactcccaccaccTCAATTCCCCCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189253397 42 + 189454096 atcaccactgccgccagcactcccaccaccTCAATTCCCCCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178671393 42 + 178775436 atcaccactgccgccagcactcccaccaccTCAATTCCCCCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135604332 42 + 135778131 atcaccactgccgccagcactcccaccaccTCAATTCCCACT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190712187 42 - 190850796 atcaccactgccactagtactgccaccaccTTGATTCCCACT
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87869153 296 - 129401213 I
e canFam3.chr16             18159961  0 -  59632846 C

a score=72903.000000
s hg38.chr4_KI270925v1_alt    486273 21 +    555799 AAATATTATTACTCCGGAAGC
s panTro4.chr4             193197653 21 + 193495092 AAATATTATTACTCTGGAAGC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198276887 21 + 198332218 AAATATTATTACTCCAGAATC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113944941 21 + 115148730 aAATATCATTACTCCAGAAGC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183859985 21 + 184069350 AAATATTATTACTCAAGAAGC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189253439 21 + 189454096 AAATATTATTACTCAAGAAGC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178671435 21 + 178775436 AAATATTATTACTCAAGAAGC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135604374 21 + 135778131 AAATATTATTACTCAAGAAGC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190712229 21 - 190850796 AAATATTATTACTCAAGAAGC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18159961 21 -  59632846 AAATATTATTACCAGAGAAGT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87869153 296 - 129401213 I

a score=182769.000000
s hg38.chr4_KI270925v1_alt    486294 48 +    555799 -TCCTTTACCCAGGAAATCAGGCATTCTTCAAGACTTCATGGTTTCATT
s panTro4.chr4             193197674 48 + 193495092 -CCCTTTGCCCAGTAAATCAGGCATTCTTCAAGACTTCATGGTTTCATT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198276908 45 + 198332218 -TCCTCTACCCAGGAAATCAGGCATTCTTC---ACTTCATGGTTTCATT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113944962 48 + 115148730 -TCCTTGGCCCAGGAAATCAGGCATTCTTCAACACTTCATGGTTTCATT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183860006 48 + 184069350 -TCCTTTGCCCAGGAAATCAGGCATTCTTCAAGACTTCATGGTTTCGTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189253460 48 + 189454096 -TCCTTTGCCCAGGAAATCAGGCATTCTTCAAGACTTCATGGTTTCGTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178671456 48 + 178775436 -TCCTTTGCCCAGGAAATCAGGCATTCTTCAAGACTTCATGGTTTCGTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135604395 48 + 135778131 -TCCTTTGCCCAGGAAATCAGGCATTCTTCAAGACTTCATGGTTTCGTT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190712250 48 - 190850796 -TCCTTTGCCCAGGAAATCAGGCATTCTTGAAGACTTAATGGTTTTATT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87869449 48 - 129401213 -TCCTTTACCCAGAAAACCAGACATCCCTGGAGCATTAATGATTTTATT
i mm10.chr8                I 296 I 183
s canFam3.chr16             18159982 49 -  59632846 TTCCTTTGTTTGGAAAATCATGCGTCACTGAAGCATTAATGGTTTCCTT
i canFam3.chr16            C 0 C 0

a score=21155.000000
s hg38.chr4_KI270925v1_alt    486342 10 +    555799 ------ACACAAGGAA------------------
s panTro4.chr4             193197722 10 + 193495092 ------ACACAAGGAA------------------
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198276953 10 + 198332218 ------ACACAAGGAA------------------
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113945010  8 + 115148730 ------ACACAAGG--------------------
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183860054 10 + 184069350 ------ACACAAGGAA------------------
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189253508 10 + 189454096 ------ACACAAGGAA------------------
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178671504 10 + 178775436 ------ACACAAGGAA------------------
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135604443 10 + 135778131 ------ACACAAGGAA------------------
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190712298 10 - 190850796 ------ACACAAAGAA------------------
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18160031 34 -  59632846 TCATTAaaaaaaagaaagaaagaaagaaaaaaaA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87869497 183 - 129401213 I

a score=4031350.000000
s hg38.chr4_KI270925v1_alt    486352 1216 +    555799  
s panTro4.chr4             193197732 1200 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198276963 1216 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113945018 1217 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183860064 1211 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189253518 1211 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178671514 1202 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135604453 1211 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190712308 1196 - 190850796  
i calJac3.chr3             C 0 I 3635
s mm10.chr8                 87869680 1225 - 129401213  
i mm10.chr8                I 183 I 4
s canFam3.chr16             18160065 1237 -  59632846  
i canFam3.chr16            C 0 C 0

a score=476525.000000
s hg38.chr4_KI270925v1_alt    487568 157 +    555799 --GGTAGTCCTCTTTCTAAAGCAC-TGGAACATGACCCGGCTTAAGGTGAGCCCTCTCTAATCGAATG---CTGTCATTCTTGTCATATTGTGCAAATGT--TTTCACCATGCCT----GTTAGCAAC--AGATAAAGTTCCCTGGCAATAATCGTCACATAAAATGTTCC
s panTro4.chr4             193198932 157 + 193495092 --GGTAGTCCTCTTTCTAAAGCAC-TGGAACATGACCCGGCTTAAGGTGAGCCCTCTCTAATCGAATG---CTGTCATTCTTGTCATGTTGTGCAAATGT--TTTCACCATGCTC----GTTAGCAAC--AGATAAAGCTCCCTGGCAATAATCGTCACATAAAATGTTCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198278179 157 + 198332218 --ggtagtcctctttctaaagcac-tggaacatgacccggcttaaggtgagccctcTCAAATCTAATG---CTGTTATTCTTGTCATATTGTGCAAATGT--TTTCACCATGCCC----GTTAGCAAC--AGATAGAGCTCCCTGGCAATAATCTTCACCTAAAATGTTCC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113946235 157 + 115148730 --ggtagtcctctttctaaagcac-tggaacatgacctggcttaaggtgagccctctctaatcgaatg---ctgttattcttGTCATATTGTGCAAATGT--TTTCACCATGCCT----GTTAGCAAC--AGATAAAGCTCCCTGGCAATAACTGTCACATAAAGTGTTCC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183861275 155 + 184069350 ---GCCGTCCTCTTTCTAAAGCAC-TGGAAC-TGACCTGGCTTCAGGGGAGCCCTCGTGAATCGAAAG---CTATTATTCTTATCATATTGTGCAAATTG--TTTCACCATGTCC----GTTCGCAAC--AGATAAAGCTCCCTGGCAGTAATCGTCACACAAAATGTTCC
i rheMac3.chr5             C 0 I 1
s macFas5.chr5             189254729 155 + 189454096 ---GCCGTCCTCTTTCTAAAGCAC-TGGAAC-TGACCTGGCTTCAGGGGAGCCCTCGTGAATCGAAAG---CTATTATTCTTATCATATTGTGCAAATTG--TTTCACCATGTCC----GTTCGCAAC--AGATAAAGCTCCCTGGCAGTAATCGTCACACAAAATGTTCC
i macFas5.chr5             C 0 I 1
s papAnu2.chr5             178672716 155 + 178775436 ---GCCGTCCTCTTTCTAAAGCAC-TGGAAC-TGACCTGGCTTCAGGCGAGCCCTCGTGAATCGAAAG---CTATTATTCTTATCATATTGTGCAAATTG--TTTCACCATGTCC----GTTCGCAAC--AGATAAAGCTCCCTGGCAGTAATCGTCACATAAAATGTTCC
i papAnu2.chr5             C 0 I 1
s chlSab2.chr7             135605664 155 + 135778131 ---GCCGTCCTCTTTCTAAAGCAC-TGGAAC-TGACCTGGCTTCAGGGGAGCCCTCGCGAATCGAAAG---CTATTATTCTTATCATATTGTGCAAATTG--TTTCACCATGTCC----GTTCGCAAC--AGATAAAGCTCCCTGGCAGTAGTCGTCACACAAAATGTTCC
i chlSab2.chr7             C 0 I 1
s calJac3.chr3             190717139 162 - 190850796 --ggtagtCCTCCTTCTAAAGCAC-TGGAACACGACCTGGCCTAAAGCAAGCCCACTCTAAGTGAATG---TTGTTATTCTTGTTATATTGTGCAAATGG-TTTTCACCATACCCACCTGTTAACAAC--AGATAAAGTTCCCAGGGAATAACTGTCACAGAAAACTTTCT
i calJac3.chr3             I 3635 I 1
s mm10.chr8                 87870909 131 - 129401213 --tgacattctctttttaaaa-----------gtactttgtacagagtaagcccttgctaattaaatg---ttaTTGTTCTCA--------TGCTAATTG-CTTTCACCACACCC----GGTCCCCCCAAAAATAAAGCTCC----------TTGTTGCA-AAGATCTTCC
i mm10.chr8                I 4 I 34
s canFam3.chr16             18161302 164 -  59632846 agtgcag-cctctttttcaagcacttagaacattacctgacatgcagtaagtccttgttaataaaaggttattattattCTTATCATACCGTGCAAATTGTTTTTTACCATACCC----ATTAACCAA--AGATAAAGCTGCCTGGCAATAATAGTCACAAAAGATCTTCT
i canFam3.chr16            C 0 C 0

a score=283455.000000
s hg38.chr4_KI270925v1_alt    487725 107 +    555799 -ACCTACTTTATCTAGG-----AGTCAGCTGGGGTGCAAATGAGAAGGGCAAGCAGCCACTTGTAACTTGCAGAATATCAGGCTCTACAGGAGCATTTATTCTGAAAAAAGTC
s panTro4.chr4             193199089 107 + 193495092 -ACCTACTTTATCTAGG-----AGTCAGCTGGGGTGCAAATGAGAAGGGCAAGCAGCCACTTGTAACTTGCAGAATATCAGGCTCTACAGGAGCATTTATTCTGAAAAAAGTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198278336  97 + 198332218 -CCCTACTTTCTCCAGG-----AGTCA--------GCAAGTGAGAAGGGCAAGCAGCCACTTGTAACTTGCAGAATATCAGGCTCTACAGGAGCATTTATTCTG--AAAAGTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113946392 106 + 115148730 -ACCTACTTTATCTAGG-----AGTCAGCTGTGGCGCAAGTGAGAAGGGCAAGCAGCCACTTGTAACTTGCAGAATATCAGGCTCTACAGGAGCATTTATTCTA-AAAAAGTC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183861431 112 + 184069350 -CCCTACTTTATCTAGGAGCTCAGTCAGCCGGGGCTCAGGGGAGAAAGGCCAGCAGCCCCTCGAAACTTGCAGAATATCAGGCTCTAGAGAAGCATTTATCCTGAAAAAAGTC
i rheMac3.chr5             I 1 C 0
s macFas5.chr5             189254885 112 + 189454096 -CCCTACTTTATCTAGGAGCTCAGTCAGCCGGGGCTCAGGGGAGAAAGGCCAGCAGCCCCTCGAAACTTGCAGAATATCAGGCTCTAGAGAAGCATTTATCCTGAAAAAAGTC
i macFas5.chr5             I 1 C 0
s papAnu2.chr5             178672872 112 + 178775436 -CCCTACTTTATCTAGGAGCTCAGTCAGCCGGGGCTCAGGGGAGAAAGGCCAGCAGCCCCTCGAAACTTGCAGAATATCAGGCTCTAGAGAAGCATTTATCCTGAAAAAAGTC
i papAnu2.chr5             I 1 C 0
s chlSab2.chr7             135605820 112 + 135778131 -CCCTACTTTATCTAGGAGTTCAGCCAGGCGGGGCTCAGGGCAGAAGGGCCAGCAGCCCCTCGAAACTTGCAGAATATCAGGCTCTAGAGAAGTATTTATCCTGAAAAAAGTC
i chlSab2.chr7             I 1 C 0
s calJac3.chr3             190717302  97 - 190850796 -CCCTACTTTATCTAGGAACTGAGTCAGCTGGGGTTCAAGTGAGAAGGGTAAGCAGCCACT-GAAACTTGCAGAATATC--------------CGTCTATTCTGAAAAAAGTC
i calJac3.chr3             I 1 C 0
s canFam3.chr16             18161466 111 -  59632846 ATACTGGGTTCTCTGTGAAT--AGTTTGTTCAGTTACAAATGAGAAGAGCTAGCAGTCACTTATAATCTTCAGACTATCTGGCTCTGCATGAACATTGAATATGAAAAAATTC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87871040  34 - 129401213 I

a score=989953.000000
s hg38.chr4_KI270925v1_alt    487832 316 +    555799 AGGACTCCAGGGAAAGTCAAGCTCCATTCACAGCC-GTTTCTCTCCTCATCTGTCCTCGTGCTGACTCTCTTTAGAATCTCTCTGGATGGAATTCCTTCCCAACT---CCAATGGACAGAAGCAGTGAGTCCGTCCAGTCGG-TAAGTCAAACAGTCCTTCGATGACTCCACTCCAGGGTGTGCTCTGTGTGATCAGA-ACAAGTGCTTCAGCCTAAC--ACACCTACACATTCGAAAA-GGT----TTCACACAGCCTCGTTCTGCTCTTAGACGCCAACACTCCCCACACCCAATCTA----------------------CCACAA-AATAGAACAACAGAATCAGCCAA
s panTro4.chr4             193199196 316 + 193495092 AGGACTCCAGGGAAAGTCAAGCTCCATTCACAGCT-GTTTCTCTCCTCATCTGTCCTCGTGCTGACTCTCTTTAGAATCTCTCTGGATGGAATTCCTTCCCAAAT---CCAATGGACAGAAGCAGTGAGTCCGTCCAGTCTG-TAAGTCAAACAGTCCTTCGAAGACTCCACTCCAGGGTGTGCTCTGCGTGATCAGA-ACAAGTGCTTCAGCATAAC--ACGCCTACACATTCGAAAA-GGT----TTCACACAGCCTCGTTCTGCTCTTAGACGCCAACGCTCCCCACACCCAATCTA----------------------CCACAA-AATAGAACAACAGAATCAGCCAA
i panTro4.chr4             C 0 I 1353
s ponAbe2.chr4             198278433 316 + 198332218 AGGACTCCAGGGAAAGTCAAGCTCCATTCACAGCC-ATTTCTCCCCTCATTTGTCCTCGTGCTGACTCTCTTTAGAATCTCCCTGGATGGAATTCCTTCCCAACT---CCAATGGACAGAAGCAGTGAGTCCGTCCAGTCTG-TAAGTCGAACAGTCCTTCGATGATTCCACTCCAGGGTGTGCTCTGCGCGATCAGA-ACAAGTGCTTCAGCATAAC--ACGTCTACACATTCGAAAA-GGT----TTCGCACAGCCTTGTTCTGCTCTTAGACGCCAACACTCCCCACACCCAATCTA----------------------CCACAT-AATAGAACAACAGAATCAGCCAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113946498 313 + 115148730 AGGACTCCGGGGAAAGTCAAGCTCCATTCACAGCC-GTGTCTCTCCTCATCTGTCCTCGTGC-GACTCTC--TAGAATCTCTCTGGATGGAATTCCTTCCCAACT---CCAACTGACAGAAGTAGTGAGTCCGTCCAGTCTG-TAAGTCGAACAGTCCTTCGATGATTCCACTCCAGGGTGTGCTCTGTGCGGTCAGA-ACAAGTGCTTCATCATAAC--ATGTCTACACATTCGAAAA-GGT----TTTGCACAGCCTCGTTCTGCTCTTAGAAGCCAACACTCCTCACACCCAATCTA----------------------CCACAT-AATAGAACAACAGAATCAGCCAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183861543 317 + 184069350 AGGACTCCAGGGAAAGTCAGGCTCCATTCACAGTC-ATTTCTCTCCTCCTCTGGCGTCGTGCTGACTCTCTTTAGAATCTCTCTGGATGGAATTCCTTCCCAACT---CCAACGCGCAGAAGCAGTGAGTCTGTCCGGTCTG-TAAGTCGAACAGTCCTTCGATAATTCCACTCCAGGGTGTGCTCCGTGGGGTCAGA-ACCAGTGCTTCAGTGTAAC--AGGCCTACACATTTGAAAGCGGT----TCCTCGCAGCCTCGCCCTGCTCTTAGAAGTCAACGCTCCCCACACCCAACCCA----------------------GCACGT-AACAGAACAGCAGACTCAGCCAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189254997 315 + 189454096 AGGACTCCAGGGAAAGTCAGGCTCCATTCACAGTC-ATTTCTCTCCTCCTCTGGCGTCGTGCTGACTCTC--TAGAATCTCTCTGGATGGAATTCCTTCCCAACT---CCAACGCGCAGAAGCAGTGAGTCTGTCCAGTCTG-TAAGTCGAACAGTCCTTCGATAATTCCACTCCAGGGTGTGCTCTGCGGGGTCAGA-ACCAGTGCTTCAGTGTAAC--AGGCCCACACATTTGAAAGCGGT----TCCTCGCAGCCTCGCCCTGCTCTTAGAAGTCAACGCTCCCCACACCCAACCCA----------------------CCACGT-AACAGAACAGCAGACTCAGCCAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178672984 317 + 178775436 AGGACTCCAGGGAAAGTCAGGCTCCATTCACAGcc-atttctctcctcctctggCGTCGCGCTGACTCTCTTTAGAATCTCTCTGGATGGAATTCCTTCCCAACT---CCAACGCGCAGAAGCAGTGAGTCTGTCCAGTCTA-TAAGTCGAACAGTCCTTCAGTAATTCCACTCCAGGGTGTGCTCTGCGGGGTCAGA-ACCAGTGCTTCAGTGTCAC--AGGCCTATACATTCGAAAGCGGT----TCCTGGAAGCCTCGCTCTGCTCTTAGAAGTCAACGCTCCCCACACCCAACCCA----------------------CCACGT-AACAGAACAGCAGACTCAGCCAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135605932 317 + 135778131 AGGACTCCAGGGAAAGTCAGGCTCCATTCACAGCC-ATTTCTCTCCTCCTCTGGCGTCGCGCTGACTCTT--TAGAATCTCTCTGGATGGAATTCCTTCCCAACT---CCAACGCGCAGAAGCAGTGAGTCTGTCCAGTCTG-TAAGTCGAACAGTCCTTCAGTAATTCCACTCCAGGGTGTGCTCTGCGGGGTCAGA-ACCAGTGCTTCAGTGTAACAGAGGCCTACACATTCGAAAGCGGT----TCCTCGCAGCCTCGCTCTGCTCTTAGAAGTCAACGCTCCCCACACCCAACCCA----------------------CCACGT-AACAGAACAGCAGACTCGGCCAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190717399 338 - 190850796 AGGACTCCAGGGAAAGTCAAGCTCCATTCACAGCC-ATTTCTCTCCTCATCTACCCT-GCGTTGACTCTCTTTGGAATCTCTCTGGATGGAATTCCTTCCCAACC---CCAATGGACAGAAGCAGTGAGTCCATCCAGTTTA-TAAGTTGAACACTCCTTCAATGATTCCACTCTGGGGTGTGCTCAGCGCGATCAGA-ACACGTGCTTCAGCGTGAC--ACACCTACATGTTCGAAAATGGT----TTCTTGCAGCCTGGTTCTGCTTTTAGAAGTCAACATTCCTCACACCCAATCTACCTGTTTTGTTTTTTTTTCCCTCCACAT-AATAGAACATCAGAATCAGCCAA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87871074 318 - 129401213 GGGACTT--GGGAAAATGAAGCTTCCTTCAGAGCCTGTTTCTCTTC-CACCCTTCCTCAGACTGACTCTCTGTAGCCTTTCTCT--AAGCAGTTCTTTCCTCTTCCTACCGATAGACAGAAACTAGGAGGCTATTCTGTTCGTTAAGTTTGGCGTTCTTTCTCCAATTCCGTCCTAAAATTTGCT--GTGTGCTCAGAGGCGAATGTCTC----------ATTCCT---------AAAATGGTACCGTGCACGCAATCTGGTTTTGTGCTTGGAAGTCACCATATGCCACACCTCGTCTCCCTATTTCTTTTTAT-------CCATGTAAACCAAACAAGGGAATTGGCCA-
i mm10.chr8                I 34 C 0
s canFam3.chr16             18161577 314 -  59632846 AGGAGCCCAGGAAAAGTCAAGGTCCTCTTCGAGCC-ATTTAGCCTTTC--------TTACACTGACTCAGCTGAGAAGACCTTTGGGCTGAATTCCTTTCTCACT---CCAATGGACAGAAGCAATGAGTCCATCAGGTTTC-CAACTATAGAGCTCTCTCTAAAATTCCATTCTAGAATCTGCTCTGTGTGGT---A--------TTTGAGTGTGAC--ATTCCAACAGATTCTAAAATGGT----TCCGTGTGGTCTGGTTCTGCTCTTGGAAGTCAACATTCCTCATACCGGATCTACCTGTCTCTTTTTTTTTTTC--CCACAT-AAT-----AATAGAATTGGCCAA
i canFam3.chr16            C 0 C 0

a score=2500.000000
s hg38.chr4_KI270925v1_alt    488148 2 +    555799 --AC
s panTro4.chr4             193200865 2 + 193495092 --AT
i panTro4.chr4             I 1353 C 0
s ponAbe2.chr4             198278749 2 + 198332218 --AC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113946811 2 + 115148730 --AC
i nomLeu3.chr7b            C 0 I 40
s rheMac3.chr5             183861860 2 + 184069350 --AC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189255312 2 + 189454096 --AC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178673301 2 + 178775436 --AC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135606249 2 + 135778131 --AC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190717737 2 - 190850796 --AC
i calJac3.chr3             C 0 I 1
s mm10.chr8                 87871392 2 - 129401213 --AT
i mm10.chr8                C 0 C 0
s canFam3.chr16             18161891 3 -  59632846 AGA-
i canFam3.chr16            C 0 C 0

a score=29060.000000
s hg38.chr4_KI270925v1_alt    488150 8 +    555799 GCCCTCTC
s panTro4.chr4             193200867 8 + 193495092 CCCCTCTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198278751 8 + 198332218 CCCCTCTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113946853 8 + 115148730 CCCCTCTC
i nomLeu3.chr7b            I 40 C 0
s rheMac3.chr5             183861862 8 + 184069350 GCCCTCTC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189255314 8 + 189454096 CCCCTTTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178673303 8 + 178775436 GCCCTCTC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135606251 8 + 135778131 CCCCTCTC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190717740 8 - 190850796 CCCCTCTC
i calJac3.chr3             I 1 C 0
s mm10.chr8                 87871394 8 - 129401213 GCCTGCTC
i mm10.chr8                C 0 C 0
s canFam3.chr16             18161894 8 -  59632846 GCCCTCCC
i canFam3.chr16            C 0 C 0

a score=11916.000000
s hg38.chr4_KI270925v1_alt    488158 3 +    555799 CAC
s panTro4.chr4             193200875 3 + 193495092 CAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198278759 3 + 198332218 CAC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113946861 3 + 115148730 CAC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183861870 3 + 184069350 CAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189255322 3 + 189454096 CAC
i macFas5.chr5             C 0 T 33
s papAnu2.chr5             178673311 3 + 178775436 CAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135606259 3 + 135778131 CAC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190717748 3 - 190850796 CAC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18161902 3 -  59632846 TAC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87871402 0 - 129401213 C

a score=851.000000
s hg38.chr4_KI270925v1_alt    488161 8 +    555799 -GGAGGCGA
s panTro4.chr4             193200878 8 + 193495092 -GGAGGCGA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113946864 8 + 115148730 -AGAGGGGA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183861873 5 + 184069350 -GGAGG---
i rheMac3.chr5             C 0 C 0
s chlSab2.chr7             135606262 8 + 135778131 -GGAGGAGA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190717751 8 - 190850796 -TGAGGTGA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18161905 8 -  59632846 CACAGCTA-
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87871402 0 - 129401213 C
e papAnu2.chr5             178673314 0 + 178775436 C
e macFas5.chr5             189255325 33 + 189454096 T
e ponAbe2.chr4             198278762 0 + 198332218 C

a score=5348.000000
s hg38.chr4_KI270925v1_alt    488169 2 +    555799 AG
s panTro4.chr4             193200886 2 + 193495092 AG
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113946872 2 + 115148730 AG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183861878 2 + 184069350 AG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189255292 2 + 189454096 AG
i macFas5.chr5             T 33 C 0
s chlSab2.chr7             135606270 2 + 135778131 AG
i chlSab2.chr7             C 0 I 37
s calJac3.chr3             190717759 2 - 190850796 AG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18161913 2 -  59632846 AG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87871402 0 - 129401213 C
e papAnu2.chr5             178673314 0 + 178775436 C
e ponAbe2.chr4             198278762 0 + 198332218 C

a score=3225.000000
s hg38.chr4_KI270925v1_alt    488171 2 +    555799 GA
s panTro4.chr4             193200888 2 + 193495092 GA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113946874 2 + 115148730 GA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183861880 2 + 184069350 GA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189255294 2 + 189454096 AA
i macFas5.chr5             C 0 C 0
s calJac3.chr3             190717761 2 - 190850796 GA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18161915 2 -  59632846 GA
i canFam3.chr16            C 0 I 13
e mm10.chr8                 87871402 0 - 129401213 C
e chlSab2.chr7             135606272 37 + 135778131 I
e papAnu2.chr5             178673314 0 + 178775436 C
e ponAbe2.chr4             198278762 0 + 198332218 C

a score=9818.000000
s hg38.chr4_KI270925v1_alt    488173 17 +    555799 CA-CAGGGTCAGCCAAAC
s panTro4.chr4             193200890 17 + 193495092 CA-CAGGATCAGCCAAAC
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113946876 17 + 115148730 CA-CAGAATCAGCCACGT
i nomLeu3.chr7b            C 0 T 80
s rheMac3.chr5             183861882 17 + 184069350 GA-CAGAATCAGCCAAAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189255296 18 + 189454096 CAGCAGACTCAGCCAAAC
i macFas5.chr5             C 0 C 0
e mm10.chr8                 87871402  0 - 129401213 C
e canFam3.chr16             18161917 13 -  59632846 I
e calJac3.chr3             190717763  0 - 190850796 C
e chlSab2.chr7             135606272 37 + 135778131 I
e papAnu2.chr5             178673314  0 + 178775436 C
e ponAbe2.chr4             198278762  0 + 198332218 C

a score=11615.000000
s hg38.chr4_KI270925v1_alt    488190 16 +    555799 CCCCTCTCCACCGAGG
s panTro4.chr4             193200907 16 + 193495092 CCCCTTTCCATGGAGG
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113946813 16 + 115148730 CCTCTCTCCACAGAGG
i nomLeu3.chr7b            T 80 C 0
s rheMac3.chr5             183861899 16 + 184069350 GCCCTCTCCACGGAGG
i rheMac3.chr5             C 0 I 6
s macFas5.chr5             189255314 16 + 189454096 CCCCTTTCCACGGAGG
i macFas5.chr5             C 0 C 0
e mm10.chr8                 87871402  0 - 129401213 C
e canFam3.chr16             18161917 13 -  59632846 I
e calJac3.chr3             190717763  0 - 190850796 C
e chlSab2.chr7             135606272 37 + 135778131 I
e papAnu2.chr5             178673314  0 + 178775436 C
e ponAbe2.chr4             198278762  0 + 198332218 C

a score=20966.000000
s hg38.chr4_KI270925v1_alt    488206 47 +    555799 AGAAGGACACAGGATCAGCCAAACCCCCTCTCCACCGAGGAGAAGGA
s panTro4.chr4             193200923 47 + 193495092 TGAAGGACACAGAATCAGCCAAACCCCCTCTCCACCAAGGAGAAGGA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113946829 47 + 115148730 CGAAGGACACAGAATCAGCCAAACCCCCTCTCCACAGAGGGGAAGGA
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189255330 47 + 189454096 AGAAGGAGACAGAATCAGTGGAACCCCCTCTCCATGGAGGCGAAGGA
i macFas5.chr5             C 0 T 40
e mm10.chr8                 87871402  0 - 129401213 C
e canFam3.chr16             18161917 13 -  59632846 I
e calJac3.chr3             190717763  0 - 190850796 C
e chlSab2.chr7             135606272 37 + 135778131 I
e papAnu2.chr5             178673314  0 + 178775436 C
e rheMac3.chr5             183861915  6 + 184069350 I
e ponAbe2.chr4             198278762  0 + 198332218 C

a score=15376.000000
s hg38.chr4_KI270925v1_alt    488253 40 +    555799 CACAGGATCAGCCAAACCCCCTCTCCAGCGAGGAGAAGGA
s panTro4.chr4             193200970 40 + 193495092 CACAGGATCAGCCAAACCCCCTCACCACGGAGGCGAAGGA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113946876 40 + 115148730 CACAGAATCAGCCACGTCCCCTATCCACGGAGGTGAAGGA
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189255337 40 + 189454096 GACAGAATCAGTGGAACCCCCTCTCCATGGAGGCGAAGGA
i macFas5.chr5             T 40 T 81
e mm10.chr8                 87871402  0 - 129401213 C
e canFam3.chr16             18161917 13 -  59632846 I
e calJac3.chr3             190717763  0 - 190850796 C
e chlSab2.chr7             135606272 37 + 135778131 I
e papAnu2.chr5             178673314  0 + 178775436 C
e rheMac3.chr5             183861915  6 + 184069350 I
e ponAbe2.chr4             198278762  0 + 198332218 C

a score=14614.000000
s hg38.chr4_KI270925v1_alt    488293 36 +    555799 -CACAGGATCAGCCAAACCCCCTCTCCAGCGAGGAGA
s panTro4.chr4             193201010 36 + 193495092 -CACAGGATCAGCCAAACCCCCTCTCCACCAAGGAGA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113946916 36 + 115148730 -CACAGAATCAGCCACATCCCCTCTCCACGGAGGCGA
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189255296 37 + 189454096 CAGCAGACTCAGCCAAACCCCCTTTCCACGGAGGAGA
i macFas5.chr5             T 81 T 41
e mm10.chr8                 87871402  0 - 129401213 C
e canFam3.chr16             18161917 13 -  59632846 I
e calJac3.chr3             190717763  0 - 190850796 C
e chlSab2.chr7             135606272 37 + 135778131 I
e papAnu2.chr5             178673314  0 + 178775436 C
e rheMac3.chr5             183861915  6 + 184069350 I
e ponAbe2.chr4             198278762  0 + 198332218 C

a score=16350.000000
s hg38.chr4_KI270925v1_alt    488329 40 +    555799 AGGACA-CAGGATCAGCCAAACCCCCTCTCCACAGAGACAA
s panTro4.chr4             193201046 40 + 193495092 AGGACA-CAGAATCAGCCACATCCCCTCTCCATGGAGGCGA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113946952 40 + 115148730 AGGACA-CAGAATCAGCCAAACCCCCTCTCCACAGAGGGGA
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189255292 41 + 189454096 AGAACAGCAGACTCAGCCAAACCCCCTTTCCACGGAGGAGA
i macFas5.chr5             T 41 T 41
e mm10.chr8                 87871402  0 - 129401213 C
e canFam3.chr16             18161917 13 -  59632846 I
e calJac3.chr3             190717763  0 - 190850796 C
e chlSab2.chr7             135606272 37 + 135778131 I
e papAnu2.chr5             178673314  0 + 178775436 C
e rheMac3.chr5             183861915  6 + 184069350 I
e ponAbe2.chr4             198278762  0 + 198332218 C

a score=35713.000000
s hg38.chr4_KI270925v1_alt    488369 84 +    555799 AGGACA-CAGAATCAGCCAAACTCTCTCTCCACGGAGGCGAAGGACACAGAATCAGCCAAACTCCCTCTCCACGGAGGCGAAGGA
s panTro4.chr4             193201086 84 + 193495092 AGGACA-CAGAATCAGCCAAACCCCCTCTCCACGGAGGCGAAGGACACAGGATCAGCCAAATCCCCTCTCCAGCAAGGAGAAGGA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113946992 84 + 115148730 AGGACA-CAGAATCAGCCACGTCCCCTCTCCATGGAGGCGAAGGACACAGAATCAGCCAAACCCCCTCTCCACGGAGGCAAACGA
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189255292 85 + 189454096 AGAACAGCAGACTCAGCCAAACCCCCTTTCCACGGAGGAGAAGGAGACAGAATCAGTGGAACCCCCTCTCCATGGAGGCGAAGGA
i macFas5.chr5             T 41 T 40
e mm10.chr8                 87871402  0 - 129401213 C
e canFam3.chr16             18161917 13 -  59632846 I
e calJac3.chr3             190717763  0 - 190850796 C
e chlSab2.chr7             135606272 37 + 135778131 I
e papAnu2.chr5             178673314  0 + 178775436 C
e rheMac3.chr5             183861915  6 + 184069350 I
e ponAbe2.chr4             198278762  0 + 198332218 C

a score=16737.000000
s hg38.chr4_KI270925v1_alt    488453 40 +    555799 CACAGAATCAGCCAAACTCCCTCTCCACAGAGACAAAGGA
s panTro4.chr4             193201170 40 + 193495092 CACAGGATCAGCCAAACCCCCTCTCCACGGAGACAAAGGA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113947076 40 + 115148730 CACAGAATCAGCCACATTCCCTCTCCATGGAGGCCAAGGA
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189255337 40 + 189454096 GACAGAATCAGTGGAACCCCCTCTCCATGGAGGCGAAGGA
i macFas5.chr5             T 40 T 52
e mm10.chr8                 87871402  0 - 129401213 C
e canFam3.chr16             18161917 13 -  59632846 I
e calJac3.chr3             190717763  0 - 190850796 C
e chlSab2.chr7             135606272 37 + 135778131 I
e papAnu2.chr5             178673314  0 + 178775436 C
e rheMac3.chr5             183861915  6 + 184069350 I
e ponAbe2.chr4             198278762  0 + 198332218 C

a score=4857.000000
s hg38.chr4_KI270925v1_alt    488493 17 +    555799 CACAGAATCAGCCACAT
s panTro4.chr4             193201210 17 + 193495092 CACAGAATCAGCCACAT
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113947116 17 + 115148730 CACAGAATCAGCCACAT
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87871402  0 - 129401213 C
e canFam3.chr16             18161917 13 -  59632846 I
e calJac3.chr3             190717763  0 - 190850796 C
e chlSab2.chr7             135606272 37 + 135778131 I
e papAnu2.chr5             178673314  0 + 178775436 C
e macFas5.chr5             189255377 52 + 189454096 T
e rheMac3.chr5             183861915  6 + 184069350 I
e ponAbe2.chr4             198278762  0 + 198332218 C

a score=5286.000000
s hg38.chr4_KI270925v1_alt    488510 11 +    555799 CCCCTCTCCGT
s panTro4.chr4             193201227 11 + 193495092 CCCCTCTCCAC
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113947133 11 + 115148730 CCCCTCTCCAC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183861921 11 + 184069350 CCCCTTTCCAC
i rheMac3.chr5             I 6 C 0
e mm10.chr8                 87871402  0 - 129401213 C
e canFam3.chr16             18161917 13 -  59632846 I
e calJac3.chr3             190717763  0 - 190850796 C
e chlSab2.chr7             135606272 37 + 135778131 I
e papAnu2.chr5             178673314  0 + 178775436 C
e macFas5.chr5             189255377 52 + 189454096 T
e ponAbe2.chr4             198278762  0 + 198332218 C

a score=25516.000000
s hg38.chr4_KI270925v1_alt    488521 34 +    555799 GGAGGCGAAGGACACAGAATCAGCCAAACTCCCT
s panTro4.chr4             193201238 34 + 193495092 GGAGGCGAAGGACACAGAATCAGCCAAACTCCCT
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113947144 34 + 115148730 CGAGGCGAAGGACACAGAATCAGCCAAACTCCCT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183861932 34 + 184069350 GGAGGAGAAGGAGACAGAATCAGTGGAACCCCCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189255325 34 + 189454096 GGAGGAGAAGGAGACAGAATCAGTGGAACCCCCT
i macFas5.chr5             T 52 C 0
e mm10.chr8                 87871402  0 - 129401213 C
e canFam3.chr16             18161917 13 -  59632846 I
e calJac3.chr3             190717763  0 - 190850796 C
e chlSab2.chr7             135606272 37 + 135778131 I
e papAnu2.chr5             178673314  0 + 178775436 C
e ponAbe2.chr4             198278762  0 + 198332218 C

a score=5338.000000
s hg38.chr4_KI270925v1_alt    488555 6 +    555799 CTCCGT
s panTro4.chr4             193201272 6 + 193495092 CTCCAT
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113947178 6 + 115148730 CTCCAT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183861966 6 + 184069350 CTCCAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189255359 6 + 189454096 CTCCAT
i macFas5.chr5             C 0 C 0
s mm10.chr8                 87871402 6 - 129401213 CCCAGT
i mm10.chr8                C 0 C 0
e canFam3.chr16             18161917 13 -  59632846 I
e calJac3.chr3             190717763 0 - 190850796 C
e chlSab2.chr7             135606272 37 + 135778131 I
e papAnu2.chr5             178673314 0 + 178775436 C
e ponAbe2.chr4             198278762 0 + 198332218 C

a score=31549.000000
s hg38.chr4_KI270925v1_alt    488561 13 +    555799 -GGAGGCGAAGGAG
s panTro4.chr4             193201278 13 + 193495092 -GGAGGTGAAGGAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198278762 13 + 198332218 -GGAGGCAAAGGAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113947184 13 + 115148730 -GGAGACGAAGGAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183861972 13 + 184069350 -GGAGGCGAAGGAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189255365 13 + 189454096 -GGAGGCGAAGGAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178673314 13 + 178775436 -GGAGGCGAAGGAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135606309 13 + 135778131 -GGAGGCGAAGGAG
i chlSab2.chr7             I 37 C 0
s mm10.chr8                 87871408 13 - 129401213 TACAGGCAAAGAC-
i mm10.chr8                C 0 C 0
e canFam3.chr16             18161917 13 -  59632846 I
e calJac3.chr3             190717763  0 - 190850796 C

a score=45925.000000
s hg38.chr4_KI270925v1_alt    488574 14 +    555799 CTGCTGCAACT-GAC
s panTro4.chr4             193201291 14 + 193495092 CTGCTGCAACT-GAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198278775 14 + 198332218 CTGCTGCAACT-GAC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113947197 14 + 115148730 CTGCTGCAACT-GAC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183861985 14 + 184069350 CTGCTGCAACT-GAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189255378 14 + 189454096 CTGCTGCAACT-GAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178673327 14 + 178775436 CTGCTGCAACT-GAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135606322 14 + 135778131 CGGCTGCAACT-GAC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190717763 14 - 190850796 CTGCTGCAACT-GAT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87871421 14 - 129401213 CTG-TGCGACTGGAG
i mm10.chr8                C 0 C 0
e canFam3.chr16             18161917 13 -  59632846 I

a score=2055538.000000
s hg38.chr4_KI270925v1_alt    488588 540 +    555799  
s panTro4.chr4             193201305 540 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198278789 540 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113947211 538 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183861999 537 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189255392 538 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178673341 537 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135606336 537 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190717777 535 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87871435 553 - 129401213  
i mm10.chr8                C 0 C 0
s canFam3.chr16             18161930 561 -  59632846  
i canFam3.chr16            I 13 C 0

a score=3912.000000
s hg38.chr4_KI270925v1_alt    489128 2 +    555799 TA
s panTro4.chr4             193201845 2 + 193495092 TA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198279329 2 + 198332218 TA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113947749 2 + 115148730 TA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183862536 2 + 184069350 TC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189255930 2 + 189454096 TC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178673878 2 + 178775436 TC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135606873 2 + 135778131 TA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190718312 2 - 190850796 TA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87871988 2 - 129401213 TA
i mm10.chr8                C 0 I 7
e canFam3.chr16             18162491 0 -  59632846 C

a score=345966.000000
s hg38.chr4_KI270925v1_alt    489130 230 +    555799 GTAGtgaaaacacttttgcaaaaattttgacaatgagaggactctgacacagaaacattacgac-gcaaaacaaatctgacctaatcgggtccatcttgcctctagcctccaagctgcccttgctcatcctcgag---------------------------------------------------------------------tgtaagccacactaactatgggaTCgagtccatcttgcctctagcctccaagctgcccttgctcatccttgagtgtaagccatgctaactttggga
s panTro4.chr4             193201847 230 + 193495092 GGAGtgaaaacgcttttgcaaaaattttgacaatgagaaaactctgacatagaaacattacgac-gcaaaacaaatctgacctaatcaagtccatcttgcctctagcctccaagctgcccttgctcatccttgag---------------------------------------------------------------------cgtaagccacactaactatgggaTCgagtccatcttgcctctagcctccaagctgcccttgctcatccttggggggaagccacactaactatggga
i panTro4.chr4             C 0 I 763
s ponAbe2.chr4             198279331 299 + 198332218 ATAGtgaaaacgcttttgcaaaaattttgacaatgagaaaactctgacattgaaacattatgac-gcgaaacaaatctgacctaatcaggtccatcttgcctctaacctccaagctgcccttgctcatccttgagtgtaagccatgctatgggaTCAAGtccatcttgcctctagcctccaagctgcccttgctcatccttgaatgtaagccacactaactatgggaTCgagtccatcttgcctgtagcctccaagctgcccttgctcatccttgagtgtaagccacgctaactttggga
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113947751 158 + 115148730 GTAGTAAAAATGCTTTTGCAAAAATTTTGACAATGAGAAAACTCTGACATAGAAATGTTATgacagtgaaacaaatctgacctaatcgggttcatcgtgcctctaa----------------------------------------------------------------------------------------------------------------------------------------------cctccaagctgcccttgctcatccttgagtgtaagccacgctaactttgcaa
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183862538 158 + 184069350 GTAGTGAAAACGCTTTTGCAAAACTTTTGACCACGAGAAAACTGTGACATAGAAACATTATgacagcaaaacaaatctgacctaatcgagtccatcttgcctctag----------------------------------------------------------------------------------------------------------------------------------------------cctccaagctgcccttgctcacccctgagtggaagccacgctaactgtggta
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189255932 158 + 189454096 GTAGTGAAAACGCTTTTGCAAAACTTTTGACCACGAGAAAACTGTGACATAGAAACATTATgacagcaaaacaaatctgacctaatcgagtccatcttgcctctag----------------------------------------------------------------------------------------------------------------------------------------------cctccaagctgcccttgctcatccctgagtggaagccacgctaactgtggga
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178673880 141 + 178775436 ATAGTGAAAACGCTTTTGCAAAA--TTTGA-CACGAGGAAACTGTGACATAG-AACATTATGACAGC-AAACAAATCTGACT------AATCCATCTTGCCTCTAG----------------------------------------------------------------------------------------------------------------------------------------------C--TCAAGCTG-CCTTGCTCAT-CCTGAG-GGAAG-CACGCTAACTGTGGGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135606875 158 + 135778131 GTAGtgaaaacgcttttgcagaaattttgaccatgagaaaactccgacacagaaacactatgacagcaaaacaaatctgacctaatcgagtccatcttgcctctag----------------------------------------------------------------------------------------------------------------------------------------------cctccaagctgcccttgctcatccttgagtggaagccatgctaactatggga
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190718314 158 - 190850796 GTAGTGAAAATGCTTTTGCAAAAATTTTGACAATGAGAAAACTCTGACATAGGAACATACTgacagcaaaagaaatctgacctgactgactccatcttgcctctaa----------------------------------------------------------------------------------------------------------------------------------------------ctttcaagctgcccttgttcatccttgagtctaagccaagctaactatggga
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87871990   7 - 129401213 I
e canFam3.chr16             18162491   0 -  59632846 C

a score=301632.000000
s hg38.chr4_KI270925v1_alt    489360 123 +    555799 ggaatttaggtaatagtttaactttgaaacaaagatgataacagcc-ttccctgaaacaaccccctccttgcctggggaccagatgacctttggaaaattaacaaattagccacaagattagaa
s ponAbe2.chr4             198279630 124 + 198332218 ggaatttaggtaatagtttaactttgaaacaaagatgataacagcccttccctgaaacaaccccctccttgcctggggaccagatgacctttggaaaattaacaaattagccacaagattagaa
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113947909 124 + 115148730 ggaatctgggtaatagtttaactttgaaacaaagatgataacagcccttccctgaaacaactccctccttgcctggggaccagaagacctttggaaaattaacaaattagccacaagattagaa
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183862696 124 + 184069350 ggaatttaggtaatagtttaactttgaaacaaagatgacaacagcccttccctgaaacaacccccttcttgcctggagaccagatgacctttggaaaattaacaaattagccacaagattagaa
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189256090 124 + 189454096 ggaatttaggtaatagtttaactttgaaacaaagatgacaacagcccttccctgaaacaacccccttcttgcctggagaccagatgacctttggaaaattaacaaattagccacaagattagaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178674021 123 + 178775436 GGAATTTAGGTAATAGTTTAACTTTG-AACAAAGATGACAACAGCCCTTCCCTGAAAcaacccccttcttgcctggagaCCAGATGACCTTtggaaaattaacaaattagccacaagattagaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135607033 124 + 135778131 ggaatttaggtaacagtttaactttgaaacaaagatgacaacagcccttccctgaaacaacccccttcttgcctggagaccagacgacctttggaaaattaacaaattagccacaagattagaa
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190718472 124 - 190850796 ggaatttagttaatagtttaactttgaaacaaacatgacaacagcccttccctgaaacaacccccttattgcctgggggccagacaacctttggaaaactaacaaattagccacaagattagaa
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87871990   7 - 129401213 I
e canFam3.chr16             18162491   0 -  59632846 C
e panTro4.chr4             193202077 763 + 193495092 I

a score=1326270.000000
s hg38.chr4_KI270925v1_alt    489483 470 +    555799 attatggctcaggaatcatgcaaccggaggccacaaaatcacggacctctccagttgttcctgtggataacattactattgtaaccctaagattggtgttcaaggtgtttt-cagacgctgaattttgatggaccagctggcaccacgtagaagggtaaactggctcatctggtattgtggcccccacccaggaaccaactcagcacaagagggcagcttcaactccctgtcatttcttctccaacccagccaatcagcactccccattccctagctcccaccccaccaaaccagctttcaaaaatcctagcctctgaattttcagggaagttgatctgagtcataagaaagctccagtctcccttttagctggctctacgtgtatta-gactctttcccagttgcaatcccccagtcttgacaaatgggctctatcttggcagtgggcaaaaagaaccccttgggtggtta
s panTro4.chr4             193202840 472 + 193495092 attatggctcaggaatcatgcaaccagaggccacaatatcactgacctctccaattgttcctgtggataacattactattgtaaacctaagattggtgctcaaggtatttttcagaccctgaattttgatggaccagctggcaccatgtagaagggtaaactggctcatctggtattgtggcccccacccaggaaccaactcagcacaagagggcagcttcaactccctgtcatttcttctccaacccagccaatcagcactccccattccctagctcccaccccaccaaaccagatttcaaaaatcctagcctctgaattttcagggaagttgatttgagtcataagaaagctccagtctcccttttagctggctctacgtgtattaagactctttcccggttgcaatcccccagtcttgacaaatgggctctatcttggcagcgggcaaaaagaaccccttgggtggtta
i panTro4.chr4             I 763 C 0
s ponAbe2.chr4             198279754 471 + 198332218 attatggctcaggaatcatgcagccagaggccacaaaatcactggcctctccaattgttcctgtggataacattactattgtaaacctaagattggtgttcaaggtatttttccgaccctgaattttgatggaccagctggcaccacgcagaagggtaaactggctcatcttgtattatggcctccatccaggaaccaactcagcacaagagggcagcttcaactccctgtcatttcatcttcaacctagccaatcagcactccccattccctagcccccaccccaccaaaccagctttcaaaaatcctagcctctgaattttcagggaagttgatttgagtcataagaaagctccagtctcccttttagctggctctacgtgtatta-gactctttcccagttgcaatcccccagtcttgacaaatgggctctatcttggcagcaggcaaaaagaaccccttgggtggtta
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113948033 469 + 115148730 attacggctcaggaatcatgcagccagagcccacaaaatcactgacctctccagttgttactatggataacattactactgtaaacctaagattggtgttcaaggtatttttcagaccctgaattttgatgcaccagctggcaccacatagaagggtaaactggctcatctggtattggcgcccccacccaggaaccaactcagcacaagagggcagcttcaactccctgtcattccatctccaacccagccaatcagcactccccattccctagcccctgccctgccaaaccagctttcaaaaatcctagcctctgagttttcagggaagttgatttgagtcataagaaagctccagtctccattctagctggctctacatgtatta-gactc--tcccagttgcagtcccctggtcttgacaaatgggctctatcttggcagcaggcaaaaagaactccttgggtggtta
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183862820 467 + 184069350 attatggctcaggaatcatgcagccaggggccacaaaatcgctcacctctccaattgttcctatggataacattactattgtaaaactaagattggtgttcaaggtagttttcaaactccgaattttgatggaccagctggcaccacatggaagggtaaactggctcatctggt-ttttggccccgacccaggcacaagcccagcacaagagggcagcttcgactccctgtcatttcatctccagcctaaccaatcagcacgccccattccctagc-cccaccccaccaaatcagctttcaaaattcctagcctctgaattttcagggaagttgatttgagtc--aagaaagctccagtctcccttttagctggctctgcgtgtatta-aacgctttctcagttgcaatcccctggtcttgataaatgggctctatcttggcagcgggcaaaaagaacctcttgggtggttg
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189256214 469 + 189454096 attatggctcaggaatcatgcagccaggggccacaaaatcgctcacctctccaattgttcctatggataacattactattgtaaaactaagattggtgttcaaggtagttttcaaactccgaattttgatggaccagctggcaccacatggaagggtaaactggctcatctggt-ttttggccccgacccaggcacaagcgcagcacaagagggcagcttcgactccctgtcatttcatctccagcctaaccaatcagcacgccccattccctagc-cccaccccaccaaatcagctttcaaaattcctagcctctgaattttcagggaagttgatttgagtcataagaaagctccagtctcccttttagctggctctgcgtgtatta-aacgctttctcagttgcaatcccctggtcttgataaatgggctctatcttggcagcgggcaaaaagaacctcttgggtggttg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178674144 469 + 178775436 attatggctcAGGAATCATGCAGCCAGGGGCCACAAAATCGCTCACCTCTCCAATTGTTCCTATGGATAACATTACTATTGTAAACCTAAGATTGGTGTTCAAGGTAGTTTTCAGACCCCGAATTTTGATGGACCAGCTGGCACCACATGGAAGggtaaactggctcatctggt-ttTTGGCCCCCACCCAGGCACAAGCCCAGCACTAGAGGGCAGCTTCGACTCCCTGTCATTTCATCTCCAGCCCAACCAATCAGCACGCCCCATTCCCTAGC-CCCACCCCACCAAATCAGCTTTCAAAATTCCTAGCCTCTGAATTTTCAGGGAAGTTGATTTGAGTCATAAGAAAGCTCCAGTCTCCCTTTTAGCTGGCTCTGCATGTATTA-AACGCTTTCTCAGTTGCAATCCCCTGGTCTTGATAAATGGGCTCTATCTTGGCAGCGGGCAAAAAGAACCTCTTGAGTGGTTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135607157 469 + 135778131 attatggctcaggaatcatgcagccagaggccacaaaatcgctaacctctccagttgttcctatgggtaacattactattgtaaacctaagattggtgttcaaggtagttttcagaccccgaattttgatggaccagctggcaccacatggaagggtaaactggctcatctggt-ttttggcccccatccaggaaccagctcagcacaagagggcagcttcgactccctgtcatttcatctccaacccaaccaatcagcacgccccattccctacc-cccaccccaccaaatcagctttcaaaaatcctagcctctgaattttcagggaagttgatttgagtcataagaaagctccagtctcccttttagctgactctacgtgtatta-aacgctttctcagttgcaatcccctggtcttgataaacgggctctatcttggcagcgggcaaaaagaacctcttgggtggttg
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190718596 412 - 190850796 attatggctcaggaatcatgcagccacagg-cacaaaatcactaacctctccaattgttcctatggataacattactattgtaaacctgaggttggcattcaaggtatttttcagatcctgaaatttgatggaccagctggcaccatgtagaatggtaaactggctcatctggtattgtggctcccaccc----------------------------------------------------------aaccaaccagcattccccattccctggcccccaccccaccaaaccagctttaaaaaatcctggcctctgaattttcagggaagttgatttgagtcataataaagctccagcctcccttttagctggctctacatgtatta-aactctttctcagttgcaatccccccatcttgataaatcggctctatcttggcagcaggcaaaaagaaccccttgggtgatca
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87871990   7 - 129401213 I
e canFam3.chr16             18162491   0 -  59632846 C

a score=112400.000000
s hg38.chr4_KI270925v1_alt    489953 35 +    555799 caGTGGTCTGTTTGTTTCAAAGGCACTCTCATTTC-
s panTro4.chr4             193203312 35 + 193495092 caGTGGTCTGTTTATTTCAAAGGCACTCTCATTTC-
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198280225 35 + 198332218 caGTGGTCTGTTTATTTCAAAGTCACTCTCATTTC-
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113948502 35 + 115148730 cCGTGGTCTGTTTATTTCAAAGGCACTCTCATTTC-
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183863287 35 + 184069350 caGTGGTCTGTTTATTCCAAAGGTATTCTCATTTC-
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189256683 35 + 189454096 caGTGGTCTGTTTATTCCAAAGGTATTCTCATTTC-
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178674613 35 + 178775436 CAGTGGTCTGTTTATTCCAAAGGTATTCTCATTTC-
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135607626 35 + 135778131 caGTGGTCTGTTTATTTCAAAGGCATTCTCATTTC-
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190719008 35 - 190850796 caGCATTCTGTTTATTTCAAAGGCACTCTCATTTC-
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18162491 34 -  59632846 CAGGATTCTGCT--TTTCAAAGGCACTCCCATCTGC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87871990  7 - 129401213 I

a score=1541720.000000
s hg38.chr4_KI270925v1_alt    489988 460 +    555799  
s panTro4.chr4             193203347 460 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198280260 460 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113948537 459 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183863322 501 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189256718 456 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178674648 459 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135607661 459 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190719043 455 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87871997 414 - 129401213  
i mm10.chr8                I 7 I 290
s canFam3.chr16             18162525 491 -  59632846  
i canFam3.chr16            C 0 C 0

a score=361510.000000
s hg38.chr4_KI270925v1_alt    490448 117 +    555799 ---------------AAGGATCTCCCAGGCCCACCACTAGGCAGTGGTGCAGGGCTTTAAATAACATGATCAAGATCCTTGCTCATGAGGCACAGGCACTCCATGTATAAAATGTCTGAATTTTAGATTTTC
s panTro4.chr4             193203807 117 + 193495092 ---------------AAGGATCTCCCAGGCCCACCACTAGGCAGTGGTGCAGGGCTTTAAATAACATGATCAAGATCCTTGCTCATGAGGCACAGGCACTCCATGTATAAAATGTCTGAATTTTAGATTTTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198280720 117 + 198332218 ---------------AAGGATCTCCCAGGCCCACCACTAGGCAGTGGTGCAGGGCTTTAAATAACATGATCAAGATCCTTGCTCATGAGGCACAGGAACTCCATGTATAAAGTGTCTGAATTTTAGATTTTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113948996 117 + 115148730 ---------------AAGGTTCTGCCAGGCCCACCGCTAGGCCGTGGTGCAGGGCTTTAAATCACATGATCAAGATCCTTGCTCATGAGGCGCAAGAACTCCATGTATAAAATGTCTGAATTTTAGACTTTC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183863823 117 + 184069350 ---------------AAGGATCTGCCAGGTCCACCGCTAGGCAGTGGTACAGGGCATTAAATATCACGATCAAGATCCTTGCTCACGAGGAGCAGGAACTCCATGTATAAAATGTCTGAATTTTAGATTTTC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189257174 117 + 189454096 ---------------AAGGATCTGCCAGGTCCACCGCTAGGCAGTGGTACAGGGCATTAAATATCACGATCAAGATCCTTGCTCACGAGGAGCAGGAACTCCATGTATAAAATGTCTGAATTTTAGATTTTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178675107 117 + 178775436 ---------------AAGGATCTGCCACGTCCACCGCTAGGCAGTGGTACAGGGCATTAAATATCACGATCAAGATCCTTGCTCACGAGGAGCAGGAACTCCATGTATAAAATGTCTGAATTTTAGATTTTC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135608120 117 + 135778131 ---------------AAGGATCTGCCAGGTCCACCGCTAGGTAGTGGTACAGGGCATTAAATATCACGATCAAGATCCTTGCTCACGAGGAGCAGGAACTCCATGTATAAAATGTCTGAATTTTAGATTTTC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190719498 117 - 190850796 ---------------AAGGATCGGCCAGGCCCACCTCTAGGCAATGGTGCAGGGCTTTAAAAAACATGATCAAGATCCTTGCTCATGAGGAGCAGGGACTCCATGCATACAGCATCTGAATTTTAGATTTTC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18163016 125 -  59632846 caaatactgagttcctaatatttgccaggcacagtgctagacaatagatgtgagctataaacaagatgatcagaatccctgctcacgtaaagTGTGTGGTCTAC-------CTGTTGGCTTTTCAGATTTTT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87872411 290 - 129401213 I

a score=1156460.000000
s hg38.chr4_KI270925v1_alt    490565 355 +    555799 AAGGTGTGT---AAACATGTTAAACCACATACAGGTATTTTTTGGTATGGTGCAATTGAGATTGTAAAATGCCTAAT----------ATTTGCTGATTACTTCTTTATATTTAGTGTATCATGCCTTTTAGATGAATGCTGA-AAT-TTAAAAGAATACTTTT-GACCAGAGATGGGCAGTGACGCATCTTAAGTAGCATAGAATATCCCTGAATTTAG----------AAACAAGTAGAGGTGGCTTGTAGCAAGGTCATGTTTTAAAAACAGTGAGGAGCAACAGTCCTTAACCTCTCTGATCAGAAATACAGGTCTTATGT-GAAAAGAAAAAAGGAAAACAAAAGGTAAAATCTCCAGAAAGAAGGAAGACGCCGAGA
s panTro4.chr4             193203924 354 + 193495092 AAGGTGTGT---AAACATGTTAAACCACATACAGGTATTTTTTGGTATGGTGCAATTGAGATTGTAAAATGCCTAAT----------ATTTGCTGATTACTTCTTTATATTTAGTGTATCATGCCTTTTAGATCTATGCTGA-AAT-TTAAAAGAATACTTTT-GACCAGAGATGGGCAGTGACGCATCTTAAGTAGCATAGAATATCCCTGAATTTAG----------AAACAAGTAGAGGTGGC-TGTAGCCAGGTCACGTTTTAAAAACAGTGAGGAGCAACAGTCCTTAACCTCTCTGATCAGAAATACAGGTCTTATGT-GAAAAGAAAAAAGGAAAACAAAAGGTAAAATCTCCAGAAAGAAGGAAAACGCCAAGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198280837 354 + 198332218 AAGGTGTGT---AAACATGTTAAACCACATACAAGTATTTTTTGGTGTGATGCAATTGAGACTGTAAAATGCCTAAT----------ATTTGCTGATTACTTCTTTATATTTAGTGTATCACGCCTTTTAGATCAATGCTGA-AAT-TTAAAAGAATACTTTT-GACCAGAGATGGGCAGTGGCGCATCTTAAGTAGCATAGAATATCCCTGAAGTTAG----------AAACAAGTAGAAGTGGC-TGTAGCAAGGTCACGTTTTAAAAACAGTGAGGAGCAACAGTCCTTAACCTCTCTGATCAGAAATACAGGTCTTATGT-GAAAAGAAAAAAGGAAAACAAAAGGTAAAATCTCCAGAAAGAAGGAAAACGCCGAGA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113949113 354 + 115148730 AAGGTGTGT---AAACATGTTAAACCACATACAGATATTTTTTGGTACGGTGCAATTGAGATTCTAAAATGCCTAAT----------ATTTGCTGATTACTTCTTTATATTTAGTGTATCATGCCTTTTAGATCAATGCTGA-AAT-TTAAAAGAATACTTTT-CACCAGAGATGGGCAGTGACCCATCTTAAGTAGGATAGAATATCCCTGAATTTAG----------AAACAAGTAGAGGTGGC-TGTAGCAAGCTTATGTTTTAAAAACAGTGAGGAGCAGCAGTCCTTAACCTCCCTGATCAGAAATACAGGTCTTATGT-GAAAAGAAAAAGGGAAAATAAAAGGTAAAATCTCCAGAAAGAAGGAAAGTGCCTAGA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183863940 357 + 184069350 AAGGTGTGT---AAACACGTTAAACCACACACAGGTATTTTTTGGTACGGTACAATTGAGATTTTTAAATGCCGAGT----------ATTTGCTTA-TACTTCTTTATATTTAGTGTATCATGCCTTTTAGATCAATGCAGA-AAT-TTAAAAGAACACTTCT-GACCAGAGGTGGGCAGTGACCCATCTTAAGTGGGACCGAATATCCCTGAATTTGGCT----CTGAAAATAAGCAGAGGTGGC--CTAGCAAGGTCACACTTT-AAAACAGTGATAAGCAACAGTCCTTAACCTCTCTGATCAGAAATACAGGTCTTATGT-GAAAAGAAAAAAGGAAAACAAAAGGTAAAATCTCCAGAAAGAAGGCAAACGCCTGGA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189257291 357 + 189454096 AAGGTGTGT---AAACACGTTAAACCACACACAGGTATTTTTTGGTATGGTGCAATTGAGATTTTTAAATGCCTAGT----------ATTTGCTTA-TACTTCTTTATATTTAGTGTATCATGCCTTTTAGATCAATGCAGA-AAT-TTAAAAGAACACTTCT-GACCAGAGGTGGGCAGTGACCCATCTTAAGTGGGACCGAATATCCCTGAATTTGGCT----CTGAAAATAAGCAGAGGTGGC--CTAGCAAGGTCACACTTT-AAAATAGTGATAAGCAACAGTCCTTAACCTCTCTGATCAGAAATACAGGTCTTATGT-GAAAAGAAAAAAGGAAAACAAAAGGTAAAATCTCCAGAAAGAAGGCAAACGCCTGGA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178675224 357 + 178775436 AAGGTGTGT---AAACACGTTAAACCACACACAGGTATTTTTTGGTACGGTGcaattgagatttttaaatgccTAGT----------ATTTGCTTA-TACTTCTTTATAGTTAGTGTATCATGCCTTTTAGATCAatgcaga-aat-ttaaaagaacactTCT-GACCAGAGGTGGGCAGTGACCCATCTTAAGTGGGACAGAATATCCCTGAATTTGGCT----CTGAAAATAAGCAGAGGTGGC--CTAGCAAGGTCACACTTT-AAAACAGTGATAAGCAACagtccttaacctctctgatcaGAAATACAGGTcttatgt-gaaaagaaaaaaggaaaacaaaaggtaaaatcTCCAGAAAGAAGGCAAACGCCTGGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135608237 356 + 135778131 AAGGTGTGT---AAACACGTTAAACCACACACAGGTATTTTTTGGTATGGTGCAATTGAGATTTTTAAATGCCTAGT----------ATTTGCTTA-TACTTCTTTATATTTAGTGTATCATGCCTTTTAGATCAATGCAGA-AAT-TTAAAAGAACACTTCT-GACCAGAGGTGGGCAGTGA-CCATCTTAAGTGGGACAGAATATCCCTGAATTTGGCT----CTGAAAATAAGCAGAGGTGGC--CTAGCAAGGTCATGCTTT-AAAACAGTGATAAGCAACAGTCCTTAACCTCTCTGATCAGAAATACAGGCCTTATGT-GAAAAGAAAAAAGGAAAACAAAAGGTAAAATCTCCAGAAAGAAGGCAAACGCCTGGA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190719615 365 - 190850796 AAGGTATGG---AAACATGTTGAACCACACACAGGTATTTTTTGGTTTGGTGCAACTGAGATTAAAAAATACCTATT----------ATTTGTTTATTACTTCTTTATATTTAGTGTATCATGCCTTTTAGATCAATGCCAA-AAT-TTAAAAGAACACTTTT-GACCACAGATGGGCAGTGACCCATCTTAAGTAGGATAGAATATCCCTGAATTTAGCTATTCCTGAAAATAGGCAGAGGTGGC-TGAAGCAAGGTCACATTTTAAAAACAGTGACGAGCAACAGTCCTTAACCTTTCTGATCAGAAATACAGGTCTTGTGTGGAAAAAGAAAAAGGAAAATAAAGGGTAAAATCTCCAGGAAGAAGGCAAACACCTAGA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87872701 346 - 129401213 AAAATATGT---TAATGAGTTAAACCACCAAAAGAT-TATGTCACTTTTGTGTAATTAAGAATA-AAACTGCTTAGTATGCAAGAACATTTTCTTG-CCCTGCTTCATATTTAGTGTGTTATACCTTTTAAGTTAGCACCTA-CATGCTAGGAGAACATTTCC-AAACAGA--TGAATGGTGACATGTCTTAAACAAGATAAAATTCCCCTAACATCCA------CTATAAATAAGTCGAGGCAAG-TGCAAAAAAGCC-CATTTC--AACCAATG---AGCAACAACCTTGTACCATCTGGCTCATAAATATGGGTCCAGTAT-GAAGGGGAAAA------------GGTAACATCTCCAGACAGAAGATATACACCTAGA
i mm10.chr8                I 290 I 972
s canFam3.chr16             18163141 320 -  59632846 TAGGCATATGAAAAAAAAATCAAACCACCTGCAGG-ATCTTTTATTTCCAAGTAATTGAGATTCAGAACTGCTTAATATTTGAGAATATTTTCTAGTTACTTTCTTATAGTTCATGTATTACTCCTTTTAGATCAATATTTAGAAT-ATAAAAGAATACTTCTCCACCAGAGATGTGCAGTGAGCCATTCTAAATGTAACAGAATATCCCTGA----------------AAATAAGCAGAGGCAAT------------------------------ATAAGTAACTGTCCTTAACCCCTCTGATCAGAAATACAGGTCT-GTAT-AAAAAAAAAAGTG----ATAGATGGTAAAATCTCCAGAAAGAAGGCACA--------
i canFam3.chr16            C 0 C 0

a score=353655.000000
s hg38.chr4_KI270925v1_alt    490920 119 +    555799 GCATCTGGGACTGCCTTGTT---AACACAGCCTTGGGAACGCTGTGATGTACTTT-----------------------ATTGCAGGGATGGCACAGACATCGAATACATCTAACTATAATCACATAGCTACTGGCTCTTTAAGTT
s panTro4.chr4             193204278 119 + 193495092 GCATCTGGGACTACCTTGTT---AACACAGCCTTGGTAATGCCGTGATGTACTTT-----------------------ATTGCAGGGATGGCACAGACATCTACTACATCTAACTATAATCACATAGCTACTGGTTCTTTAAGTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198281191 119 + 198332218 GCATCTGGGACTACCTTGTT---AAAACAGCCTTGGGAATGCTGTGATGCACTTT-----------------------GTTGCAGGGATGGCACAGATATCTAATATATGTAACTATAATCACATAGCTACTGGTTCCTTGAGTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113949467 119 + 115148730 GCATCTGGGACTACCTTGTT---AAATCAGCCTTGGGAATGCTGTGATGTACGCT-----------------------GTTGCAAGGATGGCACAGACATCTAATATATCTAACTATAATCACATAGCTACTGGTTCTTTGAGTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183864297 121 + 184069350 GCATCTGGGGCTGCCTTGTT-AAAACACAGCCGTGGGAATGCTGGGATGTACTTT-----------------------ATTGCAGGGATGGCACAGACATCTAGTATACCTAACTATAATCACATGGCTACTGCTTCTTTAAGTT
i rheMac3.chr5             C 0 I 23
s macFas5.chr5             189257648 121 + 189454096 GCATCTGGGGCTGCCTTGTT-AAAACACAGCCGTGGGAATGCTGGGATGTACTTT-----------------------ATTGCAGGGACGGCACAGACATCTAATATACCTAACTATAATCACATGGCTACTGCTTCTTTAAGTT
i macFas5.chr5             C 0 I 1
s papAnu2.chr5             178675581 121 + 178775436 GCATCTGGGGCTGCCTTGTT-AAAACACAGCCGTGGGAATGCTGGGATGTACTTT-----------------------ATTGCAGGGACGGCACAGACATCTAATATATTTAACTATAATCACATGGCTACTGCTTCTTTGAGTT
i papAnu2.chr5             C 0 I 1
s chlSab2.chr7             135608593 121 + 135778131 GCACCTGGGGCTGCCTTGTT-AAAACACAGCTGTGGGAATACTGGGATGTACTTT-----------------------ATTGCAGGGATGGCACAGACATCTAATATATCTAACTATAATCACATGGCTACTGCTTCTTTGAGTT
i chlSab2.chr7             C 0 I 1
s calJac3.chr3             190719980 121 - 190850796 ACATCTAAGGTTTCCTTGTT-AAAATGTAGCCTTGGGAATGCTGTGATGTACTTT-----------------------ATTTTATGGATGGCACAGACATCTAATGCATCTAACTGTAATCACATAGGTACTGGTTCTGTGAGTT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18163461 126 -  59632846 -CATCTAGGACACTCGTGTTAAAAATATAGACTTGGAAGTACTGTGATGTACTTTATGAGGCCAGCCTCAAAATAGAAATTTTAGGCATGGCACAGATAT------------------ATAACATAGCTACCAGTTCTCTGGGTT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87873047 972 - 129401213 I

a score=27773.000000
s hg38.chr4_KI270925v1_alt    491039 16 +    555799 C-ATAGTGGGTAATATT
s panTro4.chr4             193204397 16 + 193495092 C-ATAGTGGGTGATATT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198281310 17 + 198332218 CTATAGTGGGTGATATT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113949586 17 + 115148730 CTATAGTGGGTGATATT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189257770 16 + 189454096 -CACGTTGGGCGATATT
i macFas5.chr5             I 1 C 0
s papAnu2.chr5             178675703 16 + 178775436 -CATGCTGGGcgatatt
i papAnu2.chr5             I 1 I 6
s chlSab2.chr7             135608715 16 + 135778131 -CACGTTGGGCGATATT
i chlSab2.chr7             I 1 I 6
s calJac3.chr3             190720101 17 - 190850796 CTACACTGGGTGATTTT
i calJac3.chr3             C 0 I 2
s canFam3.chr16             18163587 17 -  59632846 CTACATTTGATGGTATT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87873047 972 - 129401213 I
e rheMac3.chr5             183864418 23 + 184069350 I

a score=315983.000000
s hg38.chr4_KI270925v1_alt    491055 102 +    555799 AAAAAGAAAAAACAC------TCTTCCAAGG------------AGGTCATTGGCTACAAAGTAGATATTTTATATCCTCCTCAAAAATCAATTCTCCTTCAAAGCAAATTTGTCCACcca
s panTro4.chr4             193204413 102 + 193495092 AAAAAGAAAAAACAC------TCTTCCAAGG------------AGGTCATTGACTACAAAGTAGATATTTTATATCCTCCTCAAAAATCAATTCTCCTTCAAAGCAAATTTGTCCACcca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198281327 102 + 198332218 AAAAAGAAAAAACAC------TCTTCCAAGG------------AGGTCATTGACTACAAAGTAGATATTTTATATCCTCCTCAAAAATCAATTCTCCTTCAAAGCAAATTTGTCCtccta
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113949603 102 + 115148730 AAAAAGAAACGACAC------TCTTCCAAGG------------AGGTCGTTGACTACAAAGTAGATATTTTATATCCTCCTCAAAAATCAATTCTCCTTCAAAGCAAATTTGTCTGccca
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183864441 102 + 184069350 AAAAAGAAAAAACCC------TCTTCCAAGG------------AGGTCACTGACTACAAAATAGGTACTTTATATCCTCCTCAAAAATCAACTCTCCTTCAAAGCTAATGTGTCCACcca
i rheMac3.chr5             I 23 C 0
s macFas5.chr5             189257786 102 + 189454096 AAAAAGAAAAAACCC------TCTTCCAAGG------------AGGTCACTGACTACAAAATAGGTACTTTATATCCTCCTCAAAAATCAACTCTCCTTCAAAGCTAATGTGTCCACcca
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178675725 102 + 178775436 aaaaagaaaaaaccc------tcttCCAAGG------------AGGTCACTGACTACAAAGTAGGTACTTTATATCCTCCTCAAAAATCAATTCTCCTTCAAAGCTAATGTGTCcaccca
i papAnu2.chr5             I 6 C 0
s chlSab2.chr7             135608737 100 + 135778131 AAAAAGAAAAAA--C------TCTTCCAAGG------------AGGTCATTGACTACAAAGTAGGTACTTTATATCCTCCTCAAAAATCAATTCTCCTTCAAAGCTAATGTGTCCACcca
i chlSab2.chr7             I 6 C 0
s calJac3.chr3             190720120 102 - 190850796 AGAGAAAAAAAATAC------TCTTCCAAGG------------AGGTCATTGTCTGCGAAGTAGATACTTGATGCCCTCCTCAAAAATCAATTTTCCTTCAGGGTAAATCTGTCCACGTa
i calJac3.chr3             I 2 C 0
s canFam3.chr16             18163604 115 -  59632846 -AAAAGAAAAAATATATATAGCCTTCCAAAGACCATTGGAAAAAGGACATTGTCTGGAAGGTACATGTCTCAGAGCTTCCTCATAGCTGACT----CTTCAAAGCAAATTTGTCCATCCA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87873047 972 - 129401213 I

a score=320831.000000
s hg38.chr4_KI270925v1_alt    491157 105 +    555799 accctctgatcacgtagttggctctcctggcaaccag-cc-ccattctgaagctatctagggacccatcaagggtcCTT--ACTGTAAACTCAGGCACGGTTGTCAGTG
s panTro4.chr4             193204515 105 + 193495092 accctctaatcacgtagttggctctcctggcaaccag-cc-ccattctgaagctatctagggacccactaagggtcaTT--ACCATAAACTCAGGCACAGTTGTCAGTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198281429 105 + 198332218 accctctactcacgtagttggctctcttggcaaccag-cc-ccattctgaagctatctagggacccaccaagggtcatt--accataaaCTCAGGCACAGTTGTAAGTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113949705 105 + 115148730 accctctaatcacgtagttggctctcctggcaaccag-cc-ccattctgaagctatctagggacccaccaagggtcatt--accataAACCCAGGCACCGTTGTAAGTG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183864543 105 + 184069350 accctctaatcacagagttggctctcctggcaaccag-cc-ccattccgaagctatctatggacccatcaggggtcact--gccataaacccagacacggttgtaagtg
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189257888 105 + 189454096 accctctaatcacagagttggctctcctggcaaccag-cc-ccattccgaagctatctacagacccatcaggggtcact--gccataaacccagacacggttgtaagtg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178675827 105 + 178775436 accctctaatcacagaGTTGGCTCTCCTGGCAACCAG-CC-CCATTCCGAAGCTATCTACGGACCCATCAGGGGTCACT--GCCATAAACCCAGACACAGTTGTAAGTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135608837 105 + 135778131 accctctaatcacagagttggctctcctggcaaccag-cc-ccattctgaagctatctacggacccaccaagggtcatt--accataaacccagacacagttgtaagcg
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190720222 106 - 190850796 accctctaatcacatagttggctctcccagcaactagccc-ccattctgaagctatttaggaatccaccaagggtcatt--agcttaaactcaggaacagttataagtg
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87874019 106 - 129401213 accttgtaattatatggttagttcctctgtcaagcag-ctgctagctcgaagctatatggggttcaa--aacagacattgaagcacaaattcaggtgtagctgagagta
i mm10.chr8                I 972 C 0
e canFam3.chr16             18163719   0 -  59632846 C

a score=15680.000000
s hg38.chr4_KI270925v1_alt    491262 4 +    555799 GTTT
s panTro4.chr4             193204620 4 + 193495092 GTTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198281534 4 + 198332218 GTTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113949810 4 + 115148730 GCTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183864648 4 + 184069350 gctt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189257993 4 + 189454096 gctt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178675932 4 + 178775436 GCTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135608942 4 + 135778131 gctt
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190720328 4 - 190850796 gctt
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87874125 4 - 129401213 attt
i mm10.chr8                C 0 C 0
s canFam3.chr16             18163719 4 -  59632846 GTTT
i canFam3.chr16            C 0 C 0

a score=397603.000000
s hg38.chr4_KI270925v1_alt    491266 125 +    555799 ATTATGAACagcaaaagatggtcctccca-ccccgtctcccagaaaattacaagggctgtgggaactctgtgcaaagaacctgggacaaaggtcaaacacatatttcttaggatgccgcag-atcac
s panTro4.chr4             193204624 125 + 193495092 ATGATGAACagcaaaagatggtcctccca-ccccatctcccagaaaattacaagggctgtgggaactctgtgcaaagaacctgggacaaaggtcaaacacatatttcttaggatgctgcaa-atcac
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198281538 125 + 198332218 ATTATGAACagcaaaagatggtcctctca-ccccatctcccagaaaattacaagggctgtgggaactctgtgcaaagaacctgggacaaaggtcaaatatatatttcttaGGATGTTGCAA-ATCAC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113949814 125 + 115148730 ATTATGAACagcaaaagatggtcctcgca-ccccatctcccagaaaattacaagggctgtgggaactctgtgcaaagaacctgggataaaggtcaaatatctatttcttaggatgttgcaa-atcac
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183864652 125 + 184069350 attatgaatag-aaaagatggtcctctca-ccccatctcttaggaaatcacaagggctgtgggaactctgtgcaaagaacctgggacgaaggtcaaatatatattcctcaggatgttgcagtatcac
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189257997 125 + 189454096 attatgaatag-aaaagatggtcctctca-ccccatctcttaggaaatcacaagggctgtgggaactctgtgcaaagaacctgggacgaaggtcaaatatatattcctcaggatgttgcagtatcac
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178675936 125 + 178775436 ATTATGAATAG-AAAAGATGGTCCTCTCA-CCCCATCTCTTAGGAAATCACAAGGGCTGTGGGAACTCTGTGCAAAGAACCTGGGACGAAGGTCAAATATATATTCCTCAGGATGTTGCAGTATCAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135608946 125 + 135778131 attatgaacag-aaaaggcggtcctctca-ccccatctcttaggaaattacaagggctgtgggaactctgtgcaaagaacctgggacgaaggtcaaatatatattcctcaggatggtgcagtatcac
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190720332 126 - 190850796 attatgaatagcaaaagatggtcctctca-ccccatctctcaagaaattacaagggttgtgagaactctgtgcaaagaacctggggcaaaggtcaaatatatatttcttaagatgttgcaatatcac
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87874129 124 - 129401213 atcatgaataacaaaagatgttgccctcatccctatctgtcaaaaaattacaatggagttttta--tcggtgctaggaagcagggacgaaggccaaatacatatttacttttatatcacat-atcat
i mm10.chr8                C 0 C 0
e canFam3.chr16             18163723   0 -  59632846 C

a score=757750.000000
s hg38.chr4_KI270925v1_alt    491391 249 +    555799 aCCACCGTTGAGCACTACGGC-GACTCGAAGCAAGAAGCTTTCGTCTGAGCCTACTAGGAATGAACACACCTTGTCACGACATTGAGATTCAG---------GCACCATGTTTAGCCTACGGTGGGAAACGAGAAACTTGGGACCTAAAAGATTGGGTTT--CTTTTTATCCTATCCTAACAACAGGCAATCACAGAGTCAG---------------------------------TATGCTGGGCACTGC-AATGGCATAACATCAAACAAAACTCGCGTACTCAAGGACCCTGT
s panTro4.chr4             193204749 249 + 193495092 aCCACCGTTTAGCACTACGGC-GACTCGAAGCAAGAAGCTTTCGTCTGAGTCTACTAGGAATGAACACACCTTGTCACAACATTGAGATTCAG---------GCACCATGTTTAGCCTACGGTGGGAAACGAGAAACTTGGGACCTAAAAGATTGGGTTT--CTTTTTATCCTATCCTAACAACATGCAATCACAGAGTCAG---------------------------------TATGCTGGGCACTGC-AATGGCATAACATCAAACAAAACTCACGTACTCAAGGACCCTGT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198281663 249 + 198332218 ACCGCCGTTTAGCACTACAGC-AACTAGAAGCAAGAAGTTTTCGTCTGAGTCTACTAGGAATGAACACACCTTGTCACGATATTGAGATTCAG---------GCACCATGTTTAGCCTACGGTGGGAAATGAGAAACTTGGGACCTAAAAGATTGAGTTT--CTTTTTATCCCATCCTAACAACTTCCAATCACAGAGTCAG---------------------------------TATGCTGGGCACTGC-GATGGCGTAACCTCAAACAAAACTCACCTGCTCAAGGACCCTGT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113949939 249 + 115148730 aCCACCGTTTAGCACTACAGC-GACTCGAAGCAAGAAGCTTTCATCTGAGTCTAA-ACGAGTGAACACACCTTGTCATGATATTGAGATTCAG---------GCACCATGTTTAGCCTACGGTGGGAAATGAGAAACTTGGGACCTAAAAGATTGGGTTT--CTTTTTGTCCCATCCTAACAACATCCAATCACAGAGTCAG---------------------------------TATGCTGGGCACTGTGGATGGCGTAACATCAAACAAAACTCACGTACTCAGGGACCCTGT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183864777 246 + 184069350 aCCGCTGTTTAGCACGACAGC-AGCTCGAAGCAAGAAGCCTTCCTCTGAGTCTAGTAGGAATGAACACACCACGTCGCGATATTGAGATTCAG---------GCGTCACGTTTAGCCTACAGTGGGAAACACGAAACTCGGGACCT-AAAGATTGGCTTT--CTTTTTATCCCATCCTAACAACACCCAAGCACAGAGTCAG---------------------------------TATGCTGGGCACTGC-GATGG--TAACATCAAACAAAACTCACGTGCTCAAGGACCCTGT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189258122 246 + 189454096 aCCGCTGTTTAGCACGACAGC-AGCTCGAAGCAAGAAGCCTTCCTCTGAGTCTAGTAGGAATGAACACACCACGTCGCGATATTGAGATTCAG---------GCGTCACGTTTAGCCTACAGTGGGAAACACGAAACTCAGGACCT-AAAGATTGGCTTT--CTTTTTATCCCATCCTAACAACACCCAAGCACAGAGTCAG---------------------------------TATGCTGGGCACTGC-GATGG--TAACATCAAACAAAACTCATGTGCTCAAGGACCCTGT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178676061 246 + 178775436 ACCGCTGTTTAGCACGACAGC-AGCTCGAAGCAAGACGCCTTCCTCTGAGTCTAGTAGGAATGAACACACCACGTCGCGATATTGAGATTCAG---------GTGTCACGTTTAGCCTACGGTGGGAAACACGAAACTCGGGACCT-AAAGATTGGCTTT--CTTTTTATCCCATCCTAACAACACCCAAGCACAGAGTCAG---------------------------------TATGCTGGGTACTGC-GATGG--TAACATCAAACAAAACTCACCTGCTCAAGGACCCTGT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135609071 245 + 135778131 aCCGCTATTTAGCATGACAGC-AGCTCGAAGCAAGAAGCCTTCCTCTGAGTCTAGTAGGAATGAACACACCGCGTCGCGATATTGAGATTCAG---------GCGTCACGTTTAGCCTACAGTGGGAAACACGAAACTCAGGACCT-AAAG-TTGGCTTT--CTTTTTATCCCATCCTAACAACATCCAAGCACAGAGTCAG---------------------------------TATGCTGGGCACCGC-AATGG--TAACATCAAACAAAACTCACGTGCTCAAGGACCCTGT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190720458 256 - 190850796 aCCAC--TTTAGCACTACGGCTAACTGAAAGCCAGAAGTCTTCATCTGAGTCTGGCGGTAATGAACACACCACATGATGTTACTGAAATTCAGTGAG-AGGCGCACCATAGGCAGCCTACGGTGGGAAACAAGAAACCTGGGACCTAAAAGACTGGCTTT--GTATTTATCGCATCTTAGCAACATCCAATCACAGA-TCAG---------------------------------TATGCTGGGCACCATGGATGGCACACCACCAATCAAAACTCGAATGCTCGAGGACCCTGC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87874253 258 - 129401213 aCCAATGTTCAGCACTGTGGCTAATCCAAGGTAAGATGCTTTCAGCTGAGTCTGTCAGTAATGAGCACAGTGAATCGGGATATCAAAATTCAGTGAACAGAGACTCTATATTTAGCTCATTAGGGAAAATAAGGATCCTGGTAGCTAAAGAAATGGGTTTGGCTATTTATTTCATGCTAACAACATTCAATCATTTATACAT---------------------------------TATGTTGATCACTGGAGATGA---AACACCAACTAAGACACA-ATGTCCAAGGTCCTTGT
i mm10.chr8                C 0 I 50
s canFam3.chr16             18163723 291 -  59632846 ACCAACTTTTAACACTAGAACTAACTCAGAGCAACAAGCCTTCACCTGAATTTATCAGTAATGAGCACGCCGCATCAGGATATCGAAATGCAGTGATCTGCGTCACCATATTTATCCTAGAAGAGATAATAGGGAGTCTTGGGCCTACGAGATAGACTTTGATTTTTTATTTCACATTAACAACATTCAAtcatctatttagaaaatatttaaacccttaggatgggctatgcactatgctggacactgg-gaatg--cagctcctaacaaaaca-atgtacccaagatccctgc
i canFam3.chr16            C 0 C 0

a score=206561.000000
s hg38.chr4_KI270925v1_alt    491640  96 +    555799 TCTA--CTCTGTGGATCAACAGTTGTGGTAAGCAGAAGTACAACAAATTGTAAC-----------tttttt-----ttttttagatggagtctcgttcttgttgcccaggctgg
s panTro4.chr4             193204998  96 + 193495092 TCTA--CTCTGTGGATCAACAGTTGTGGTAAGGAGAAGTACAACAAATTGTAAC-----------tttttt-----ttttttagatggagtctcgttcttgttgcccaggctgg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198281912  96 + 198332218 TCCA--CTCTGTGGATCAACAATTGTGGTAAGGAGAAGTACAAC-AATTGTAAC---------tttttttt-----ttttttacatggagtctcgttcttgttg-ccaggctgg
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113950188  97 + 115148730 TCTA--CTCTGTGGATCAACAATTGTGGTAAGGAGAAGTACAACAAATTGTAAC----------ttttttt-----ttttttagatggagtctcattcttgttgcccaggctgg
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183865023 102 + 184069350 TCTA--CTCTGTGGATCAACAATGGTGATA---AGAAGTACAACAAATTGTAACttctt-ttatttttttt-----tttttgagatggagtctcgttctttttc-ccaggctgg
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189258368 102 + 189454096 TCTA--CTCTGTGGATCAACAATGGTGATA---AGAAGTACAACAAATTGTAACttctt-ttttttttttt-----tttttgagatggagtctcgttctttttc-ccaggctgg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178676307 107 + 178775436 TCTA--CTCTGTGGATCAACAATGGTGATA---AGAAGTACAACAaattgtaacttctt-tttttttttttttttgtttttgagatggagtctcgttctttttc-ccaggctgg
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135609316  93 + 135778131 TCTA--CTCTGTGGATCAACAATGG---TA---AGAAGTACAACAAATTCTAACtt-------tttttttt-----tttttgagatggagtctcgttctttttc-ccaggctgg
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190720714 109 - 190850796 TCTATTCTCTGTGGATCCACAATTGTGGTAAGGAGAAGTACAACAAATTGTAACTCTGTAttttttctttt-----cttttgagacagagtctcactcttgtcacccaggctgg
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18164014  36 -  59632846 tctg--ctctgtgcaccaacaattatggta---agggctgg-------------------------------------------------------------------------
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87874511  50 - 129401213 I

a score=332944.000000
s hg38.chr4_KI270925v1_alt    491736 124 +    555799 agtgcagcggtgcaatctcggctcactgcaacctctgcctccccatttcaa-tagtgctcccacctcagcctcccgagtagc-----------gtacacgtcaccacacctggctaatttttgtatttttagtaga
s panTro4.chr4             193205094 124 + 193495092 agtgcagcggtgcaatctcggctcactgcaacctctgcctccccatttcaa-tagtgctcccacctcagcctcccgagtagc-----------gtacacgtcaccacacctggctaatttttgtatttttagtaga
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198282008 124 + 198332218 agtgcagcggtgaaatctcagctcactgcagcctctgcctccccatttcaa-tagtgctcccacctcagcctcccgagtagc-----------gtacacgtcaccacacctggctaatttttgtatttttagtaga
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113950285 124 + 115148730 agtgcagcggtgcaatctcggctcactgcaacctctgcctccccatttcaa-cagtgctcccacctcagcctcccgagtagc-----------gtacacatcaccacacctggctaatttttgtagttttagtaga
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183865125 125 + 184069350 agtgcagtggtgcagtctcggctcactgcgacctctgcctccccagttcaagcgatcctgccatgtgagcctcccgagtagc-----------aggcacgtcaccacgcccagctgatttttgtatttttagtaga
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189258470 125 + 189454096 agtgcagtggtgcagtctcggctcactgcgacctctgcctccccagttcaagcgatcctcccatctgagcctcccgagtagc-----------aggcacgtcaccacgcccggctgatttttgtatttttagtaga
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178676414 125 + 178775436 agtgcagtggtgcagtctcggctcactgcgacctctgcctccccagttcaagcgatcctcccatctgagCCTCACGAGTAGC-----------AGgcacgtcaccacgcccggctgatttttgtatttttagtaga
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135609409 125 + 135778131 agtgcagtggtgcagtctcagctcactgcgacctctgcctccccagttcaagcaatcctcccatctgagcctcccgagtagc-----------aggcacgtcaccacgcctggctgatttttgtatttttagtaga
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190720823 135 - 190850796 agtgcagtggtgtgatctccgctcactgcaatctctgcctcctgggttcaagtgattctcccacctcagcctccc-agtagctaggattataagtacctgccaccacgcccagataatttttgtatttttggtaga
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87874511  50 - 129401213 I
e canFam3.chr16             18164050   0 -  59632846 C

a score=358658.000000
s hg38.chr4_KI270925v1_alt    491860 134 +    555799 gacagggtttcaccatgttggccaggctggtctcaaactcctggcctcaagtgatccgcccacctcagcctcccaaagtgctgagattacaagcatcagccaccgcacccagccCAAATT-----TT--CTTGATAGATCT
s panTro4.chr4             193205218 134 + 193495092 gacagggtttcaccatgttggccaggctggtctcaaactcctggcctcaagtgatctgcccacctcagcctcccaaagtgctgagattacaagcatcagccactgcacccagccCAAATT-----TT--CTTGATAGATCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198282132 134 + 198332218 gacagggtttcaccatgtcggccaggctggtctcaaactcctggcctcaagtgatccgcctacctgagcctcccaaagtgctgagattacaggcatgagccaccgcacccagccCAAATT-----TT--CTTGATAGATCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113950409 130 + 115148730 gacagggtttcaccatgtcggccaggctggtctcaaattcctggcctcaagtgatccacccacctcagcctcccaaagtgctgagattacaggcatgagccactgcacccagccCAAATT-----TT--CTTGATAG----
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183865250 134 + 184069350 gtcagggtttcaccatgtcgcccaggctggtctcaaactcctggcctcaactgatccgcccacttcagcctcccaaagtgctgagattatagacaggagccaccgcacatggccCAAATT-----TT--CTTGATAGATCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189258595 134 + 189454096 gtcagggtttcaccatgtcggccaggctggtctcaaactcctggcctcaactgatccgcccacctcagcctcccaaagtgctgagattatagacaggagccaccgcacatggccCAAATT-----TT--CTTGATAGATCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178676539 132 + 178775436 gtcagggtttcaccatgtcggccaggctggtct--aactcctggcctcaactgatccgcccacctcagcctcccaaagtgctgagattatagacaggagccaccgcacatggcccAAATT-----TT--CTTGATAGATCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135609534 134 + 135778131 gtcagggtttcaccatgtcggccaggctggtctcaaactcctggtctcaactgatccgcccacctcagcctcccaaagtgctgagattacagacaggagccaccgcacacggccCAAATT-----TT--CTTGATAGATCT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190720958 137 - 190850796 gatggggtttcatcatgttggccaggctggtctccaactcccggcctcaagtgatctgcccaccttggcctcccaaagtgctgggattgcaggcgtgaaccaccacacctggccCAAATTTTAACTT--CTTGATAGAT--
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18164050  37 -  59632846 gacagag-----------------------------------------------------------------------------------aaGTATGAA----------------AAATT-----GTACCTTGGTAGAGCC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87874511  50 - 129401213 I

a score=356083.000000
s hg38.chr4_KI270925v1_alt    491994 130 +    555799 AATCTGTCAGTCAGAAAGAGAGTTGTTGAATACTGAACCCACCTTAAACACTAGCAGGGTGGACAACTGTGAGATTC--------ATGTGTTCATTGCTCACATACTCTGAAGTGCCTACGCTGTGTCGCCTACTAGG
s panTro4.chr4             193205352 130 + 193495092 AATCCGTCAGTCAGAAAGAGAGTTGTTGAATACTGAACCCATCTTAAACACTAGCAGGGTGGACAACTGTGAGATTC--------ATGTGTTCATTGCTCACATACTCTGAAGTGCCTACGCTGTGTCGCCTACTAGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198282266 130 + 198332218 AATCCGTCAGTCAGAAAAAGAGTTGTTGAATGCTGAACCCACCTTAAACACTAGCAGGGTGGACGACTGTGAGATTC--------ATGTGTTCATTGCTCACATACTCTGAAGTGTCTACTCTGTGTCACCTACTAGG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113950539 129 + 115148730 -ATCAGTCAGTCAGAAAAAGAGTTGTTGAATACTGAACCCACCTTAAACTCGAGCAGGGTGGACAACTGTGAGATTC--------ATGTGTTCATTGCTCACATACTATGAAGTGCCTACTCCATGTCACCTACTAGG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183865384 130 + 184069350 AATCAGTCAGTCAGAACAAGAATTGTTGAACACGGAACACACCTTAAATACTAGCAGGGTGGGCAACTGTGAGATTC--------ATGTGCTCACTGCTCACATGCTATGAGGTGCCTACTCTGTGTCGCCTACTGGG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189258729 130 + 189454096 AATCAGTCAGTCAGAACAAGAATTGTTGAACACGGAACACACCTTAAATACTAGCAGGGTGGGCAACTGTGAGATTC--------ATGTGCTCACTGCTCACATGCTATGAGGTGCCTACTCTGTGTCGCCTACTGGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178676671 130 + 178775436 AATCAGTCAGTCAGAACAAGAATTGTTAAACACGGAACACACCTTAAATACTAGCAGGGTGGGCAACTGTGAGATTC--------ATGTGCTCACTGCTCACATGCTATGAGGTGCCTACTCTGTGTCGCCTACTGGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135609668 130 + 135778131 AATCAGTCAGTCAGAACAAGAATTGTTGAACACGGAACCCACCTTAAATACTAGCAGGATGGGCAACTGTGAGATTC--------ATGTGCTCACTGCTCAGATGCTATGAGGTCCCTACTCTGTGTCGCCTACTGGG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190721095 104 - 190850796 --TCAATCAGTCAGAAAAAGAATTG------------------TTAAACCCTAGCAGGGTGGGCAGCTGTGAGATTCTCATTTATTCATATTCATTGCTCACA--------------TACTCTATGTCACCCACTAGG
i calJac3.chr3             C 0 I 362
s mm10.chr8                 87874561  87 - 129401213 AATTTGTCAGTCAGACAAATAGGTCTTAGCTATTGAGCCTGCCTGAAAT------------------------------------ACGTATT-ACTG--------------AGTGCCTATTTTACACCACAGGCTACA
i mm10.chr8                I 50 C 0
s canFam3.chr16             18164087 115 -  59632846 ----AGTCAATTAGAA-AATAGCCCTTCAGCATGGAACCTGACTTAAACATGAACATAGTGGGCAATTGCTAGAATC--------ATCTATTCTTTGCTCACATATTACTGAGAGTCTAT----------CTACCAGG
i canFam3.chr16            C 0 C 0

a score=539082.000000
s hg38.chr4_KI270925v1_alt    492124 199 +    555799 TGGTGCGTTCTGAAGGGTGGCAACAAAGTCTCCCC-TGCAGCCTGGCAAT----AGCTTGTAGATCCTATACCCAGCCCCAGCTGCAGGAAGCTGTTAAATCCTAGGCCCAGCCGCAGCTGCTGGAAGGTGTCTCACTGCATTTTTCAACATTTGGGCTGCGTCAGCCACCTCCAGCCACACACCCACCAGCACTCACATGTGC
s panTro4.chr4             193205482 199 + 193495092 TGGTGCGTTCTGAAGGGTGGCAACAAAGTCTCCCC-TGCAGCCTGGCAAT----AGCTTGTAGATCCTATACCCAGCCCCAGCTGCAGGAAGCTGTTAAATCCGAGGCCCAGCCACAGCTGCTGGAAGGTGTCTCACTGCATTTTTCAACATTTGGGCTGCGTCAGCCACCTCCAGCCACACACCCACCAGCACTCACATGTGC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198282396 199 + 198332218 TGGTGTGTTCTAAAGGGCGGCAACAAAGTCTCCCT-GGCAGCCTGGCAAC----AGCTTGTAAATCCTATGCCCAGCCCCAGCTGCAGGAAGCTGTTAAATCCCAGGCCCAGCCACAGCTGCTGGAAGGTGTCTCACTGCATTTCCCAACATTTGGGCTGCGTCAGCCACCTCCAGCCACACACCCACCAGCACTCACATGTGC
i ponAbe2.chr4             C 0 I 12
s nomLeu3.chr7b            113950668 199 + 115148730 TGGTGTGTTCTAAAGGGTGGCAACAAACTCTCCCT-GGCAGCCTGGCAAC----AGCTTGTAAATCCTATGCCCAGCCCCAGCTGCAGGAAGCTGTTAAATCCTAGGTGCAGCCACAGCTGCTGGAAGGTGTCTCACTGCATTTTTCAACATTTGGGCTGCTTCAGCAACCTCCAGCCACACACCCACCAGCACTCACATGTGC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183865514 163 + 184069350 TGGTGTGTTCTAAAGGGTGGAAACAAGGTCTCCCT-GGCAGCCTGGCAAC----GGCTTG------------------------------------TAAACCCCAGGCCCCGCCGCCCCTGCCGGAAGGTGTCTCACTGCATTTTTCAACATTTGGGCTCCATCAGCCACCTCCAGCCACTCACCCACCAGCACTCACATGTGC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189258859 163 + 189454096 TGGTGTGTTCTAAAGGGTGGAAACAAGGTCTCCCT-GGCAGCCTGGCAAC----GGCTTG------------------------------------TAAACCCCAGGCCCCGCCGCCCCTGCTGGAAGGTGTCTCACTGCATTTTTCAACATTTGGGCTCCATCAGCCACCTCCAGCCACTCACCCACCAGCACTCACATGTGC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178676801 163 + 178775436 TGGTGTGTTCTAAAGGGTGGAAACAAGGTTTCCCT-GGCAGCCTGGCAAC----GGCTTG------------------------------------TAAACCCCAGGCCCCGCCGCCCCTGCCGGAAGGTGTCTCACTGCATTTTTCAACATTTGGGCTCCATCAGCCACCTCCAGCCACTCACCCACCAGCACTCACATGTGC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135609798 163 + 135778131 TGGTGTGTTCTAAAGGGTGGAAACAAGGTCTCCCT-GGCAGCCTGGCAAC----GGCTTG------------------------------------TAAATCCCAGGCCCAGCCGCCCCTGCCGGAAGGTGTCTCACTGCATTTTTCAACATTTGGGCTCCATCAGCCACCTCCAGCCACTCACCCACCAGCATTCACATGTGC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190721561 167 - 190850796 tGGTGTGTTCTAAA-GGTGGGAAGAAAGTCTCCCTGGGCAGCCTGGAAACAGCTGGCTTG------------------------------------TAAAGCCTATGCCCAGCCCCAGCTGCAGGAAGGTGTCTCACTGTGTTTTTCAACATTTGGGCTGCATCAGCCCCCTCCAGCCACACACCCACCAGCACTCATATGTGT
i calJac3.chr3             I 362 C 0
s mm10.chr8                 87874648 156 - 129401213 TGGCG-GTCATAGA-GGCAGCAAGAGGGCCTCGCTGAGGAGTCTGAAAGC----AATTAG-----------------------------------------CCCACCCCCAATCCCACGGGCATGCAAGTACCTTGCTGTGTTGCTTAACATTTGTCCTGCATTAGCCACCTCCAACCTCACACCCACCA-CATCCGTATATTC
i mm10.chr8                C 0 C 0
s canFam3.chr16             18164202 158 -  59632846 AGGCACATCCTAGAGGGTATGATCTAAGG-------GGCAGCCTGAAACC----AGTTAG--------------------------------CTTATAAATCCTGGGCCTAACCCCAG-TGCATGAAGGTGTCTGGCTATATTTCCCAACATTTGGCCTCCATTAGCCACCTCCAGCCACACA--CATCAGCGCTCATATACCC
i canFam3.chr16            C 0 C 0

a score=33634.000000
s hg38.chr4_KI270925v1_alt    492323 10 +    555799 AGTCACCTGG
s panTro4.chr4             193205681 10 + 193495092 AGTCACCCGG
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113950867 10 + 115148730 AGTCACCTGC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183865677 10 + 184069350 AGTCACCTGC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189259022 10 + 189454096 AGTCACCTGC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178676964 10 + 178775436 AGTCACCTGC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135609961 10 + 135778131 AGTCACCTGC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190721728 10 - 190850796 AGTCACCTGC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87874804 10 - 129401213 TGCCACCTGC
i mm10.chr8                C 0 C 0
s canFam3.chr16             18164360 10 -  59632846 AACCACCTGC
i canFam3.chr16            C 0 C 0
e ponAbe2.chr4             198282595 12 + 198332218 I

a score=1570517.000000
s hg38.chr4_KI270925v1_alt    492333 492 +    555799  
s panTro4.chr4             193205691 492 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198282607 492 + 198332218  
i ponAbe2.chr4             I 12 C 0
s nomLeu3.chr7b            113950877 557 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183865687 495 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189259032 495 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178676974 495 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135609971 496 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190721738 517 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87874814 413 - 129401213  
i mm10.chr8                C 0 I 5635
s canFam3.chr16             18164370 445 -  59632846  
i canFam3.chr16            C 0 C 0

a score=30524.000000
s hg38.chr4_KI270925v1_alt    492825 10 +    555799 AGCAAGTGGG
s panTro4.chr4             193206183 10 + 193495092 AGCAAGTGGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198283099 10 + 198332218 AGCAAGTGGG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113951434 10 + 115148730 AGTAAGTGGG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183866182 10 + 184069350 AGCAAACGGG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189259527 10 + 189454096 AGCAAACGGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178677469 10 + 178775436 AGCAAACGGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135610467 10 + 135778131 AGCAAACGGG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190722255 10 - 190850796 AACAAATGGG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18164815 10 -  59632846 ggcacttggg
i canFam3.chr16            C 0 I 763
e mm10.chr8                 87875227 5635 - 129401213 I

a score=479304.000000
s hg38.chr4_KI270925v1_alt    492835 171 +    555799 GTggaggcggcatggtcagcagttaggagcaccagctccagaagcaggtgatttgggttagaatctgccccacagcttactagtttagcaatttcccctctctgtgctcagtctctcatctgcaattgagagccataacacctaactcagaggattgttacaaatattaga
s panTro4.chr4             193206193 171 + 193495092 GTGGAGGCGGCATGGTCagcagttagaagcaccagctccagaagcaggtgatttgggttggaatctgccccacagcttactagtttagcaatttcccctctctgtgctcagtctctcatctgcaattgagagccataacacctaactcagaggattgttacaaatattaga
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198283109 171 + 198332218 GCGGAGGCAGCAAGGTCagcagttcggaacaccagctccagaagcaggtgatttgggttggaatctgccccacagcttactagtttagcaatttcccctctctgtgctcagtctctcatctgcaattgagagccataacacctaactcagaggattgctacaaatattaga
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113951444 171 + 115148730 GTGGAGGTGGCACGGTCagcagttaggagcaccagctccagaagcagatgatttgggttggaatctgccccacagcttagtagtttagcaatttcccctctctgtgctcagtctctcatctgcagttgagagccataacacctaactcagaggattgttacaaatattaga
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183866192 167 + 184069350 GCAGAGGcagcacagtcagcggtt---agcaccagctccagaagcaggtgatttgggttggaatctgccccacagcttaagagttctgcagtttcccctctctgtgctcagtctctcatctgcacctgagagccat-acacctgactcagaggattgttacaaatatcaga
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189259537 167 + 189454096 GCAGAGGcagcacagtcagcggtt---agcaccagctccagaagcaggtgatttgggttggaatctgccccacagcttaagagttctgcagtttcccctctctgtgctcagtctctcatctgcacctgagagccat-acacctgactcagaggattgttacaaatattaga
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178677479 167 + 178775436 GCAGAGGCAGCACAGTCAGCAGTT---AGCACCAGCTCCAGAAGCAGGTGATTTGGGTTGGAATCTGCCCCACAGCTTATGAGTTCTGCAGTTTCCCCTCTCTGTGCTCAGTCTCTCATCTGCAGCTGAAAGCCAT-ACACCTGACTCAGAGGATTGTTACAAATATTAGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135610477 168 + 135778131 GCGGAGGCAGCACAGTCAGCCGTT---agcaccagcaccggaagcaggtgatttgggttggaatctgccccacagcttacgagttctgcagtttcccctctctgtgctcagtctctcatctgcagctgaaagccataacacctgactcagaggattgttacaaatattaga
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190722265 169 - 190850796 ACAGAGGACGCATGGTCAGCCAttaggagcatcagctccagaagcaggtgatttgggttggaatctgccccactgcttattagttttgcaatttcatctttctgtgct--gtctctcagctgtaattgagagccgtaacacccaactcagagaattgttacaaatattaaa
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87875227 5635 - 129401213 I
e canFam3.chr16             18164825 763 -  59632846 I

a score=461165.000000
s hg38.chr4_KI270925v1_alt    493006 148 +    555799 tgaactgatacaggtaagaagcttaaaacagttcctg-------ctaagaacacaatcaatgtcac-ttattatGTTACTATCAGTaagacggacgacataatttgcgaggcccagtacaaaatgaaaatgcaaggccccttgttcaaacttcgtt
s panTro4.chr4             193206364 148 + 193495092 tgaactgatacaggtaagaagcttaaaacagttcctg-------ctaagaacacaatcaatgtcac-ttattatGTTACTATCAGcaagacggacgacataatttgcgaggcccagtacaaaatgaaaatgcaaggccccttgttcaaacttggtt
i panTro4.chr4             C 0 I 6054
s ponAbe2.chr4             198283280 148 + 198332218 tgaactgatacaggcaataagcttaaaacagttcctg-------ttaagaacacaatcaatgtcac-ttattatGTTACTATCAGcaagacggacgacataatttgtgaggcccagcacaaaatgaaaatgcaaggccccttgttcaaacatcgtt
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113951615 148 + 115148730 tgaaccgatacagataagaagcttaaaacagttcctg-------ctaagaacacagtcaatgtcac-ttattatGTTACTATCAGcaagatggatgacataattggtgaggcccagtacaaaatgaaaatgcaaggccccttgttcaaacatcatt
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183866359 149 + 184069350 tgaactgatacaggtaaggagttgaaaacagtttctg-------ctaagaacacaatcaatgtCACTTTACTATGTTACTATCAGcaagaccaatgacccactttgtgaggcccaggacaaaacgaaaatgcaaggccccttgttcaaacatcatc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189259704 148 + 189454096 tgaactgatacaggtaaggagttgaaaacagtttctg-------ctaagaacacaatcaatgtcac-ttactatGTTACTATCAGcaagaccgatgacccactttgtgaggcccaggacaaaacgaaaaagcaaggccccttgttcaaacatcatc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178677646 148 + 178775436 TGAACTGATACAGGTAAGGAGCTGAAAACAGTTCCTG-------CTAAGAACACAATCAATGTCAC-TTACTATGTTACTATCAGCAAGACCGATGACCTACTTTGTGAGGCCCAGGACAAAACGAACATGCAAGGCCCCTTGTTCAAACATCATC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135610645 147 + 135778131 tgaactgatacaggtaaggagctgaaaacag-tcctg-------ctaagaacacaatcaatgtcac-ttactatGTTACTATCAGcaagaccgatgacctactttgtgaggcccagtacaaaatgaaaatgcaaggccccttgttcaaacatcatc
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190722434 145 - 190850796 tgaactgatacaggtaagaagcttaaaatagttcc----------taagaacacaataaatgtcac-ttgttatGTTACTATCAGcaagactgactacataatttgtgaggcccagtataaaatgaaaatgcaaggccccttgttcaaaaaccatt
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18165588 148 -  59632846 tgagcaagtacatataagacactgaaaacaatgcatggtatgtagtaataatacaataaatgccag-ctcttatCTTACTACTGGcaagattcactatataatttgtggcacccagtgaaaaatgaaaatgcagggcccttggttcaaa-------
i canFam3.chr16            I 763 C 0
e mm10.chr8                 87875227 5635 - 129401213 I

a score=24735.000000
s hg38.chr4_KI270925v1_alt    493154 9 +    555799 -aagaatttc
s panTro4.chr4             193212566 9 + 193495092 -aagaatttc
i panTro4.chr4             I 6054 C 0
s ponAbe2.chr4             198283428 9 + 198332218 -aagaatttc
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113951763 9 + 115148730 -aagaatttc
i nomLeu3.chr7b            C 0 I 6181
s rheMac3.chr5             183866508 9 + 184069350 -aagcatttc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189259852 9 + 189454096 -aagcatttc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178677794 9 + 178775436 -AAGCATTTC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135610792 9 + 135778131 -aagcatttc
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190722579 9 - 190850796 -aagagtttc
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18165736 9 -  59632846 aatgaattt-
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87875227 5635 - 129401213 I

a score=391028.000000
s hg38.chr4_KI270925v1_alt    493163 133 +    555799 aagaccaaagccacaaaccattaaatcaggtgcagggtcctgctaagcatagagcact-tttgagcgcac-ggccacacattcacagcaccaatcctgCCTCCCAGCTTTAGAACAAAAGCACCTTATTGCCCTA-
s panTro4.chr4             193212575 133 + 193495092 aagatcaaagccacaaaccattaaatcaggtgcagggtcctgctaagcacagagcact-tttgagtgcac-ggccacacattcacagcaccaatcctgCCTCCCAGCTTTAGAACAAAAGCACCTTATTGCCCTA-
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198283437 133 + 198332218 aagaccatagccacaaaccactaaatcagataccgggccctgctaagcacagagcact-tgtgagcgcac-ggccacacattcacagcaccaatcctgCATCCCAGCTTTAGCACAAAAACACATTATTGCCCTA-
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113957953 132 + 115148730 aagaccatagccacaaaccattaaatcaggtacagggccctgctaagcacagagcact-tgggaatgcat-ggccacatactcaCAGCA-CAATCCTGCCTCCCAGCTTTAGCACAAAAACACGTTATTGCCCTA-
i nomLeu3.chr7b            I 6181 C 0
s rheMac3.chr5             183866517 133 + 184069350 aagaccatagccacacaccattaaatcaggtacagggccctgctgagcacagagcact-tgtgagagcac-ggccccacactcgcaacaccaatcctgCCTCCCAGGTTTAGCACAAAAACACATCATTGCCCTA-
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189259861 133 + 189454096 aagaccatagccacacaccattaaatcaggtacagggccctgctgagcacagagcact-tgtgagagcac-ggccccacactcgcaacaccaatcctgCCTCCCAGGTTTAGCACAAAAACACATCATTGCCCTA-
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178677803 133 + 178775436 AAGACCATAGCCACACACCATTAAATCAGGTACAGGGCCCTGCTGAGCACAGAGCACT-TGTGAGAGCAC-GGCCCCACACTCGCAACACCaatcctgcctcccaggtttagcaCAAAAACACATCATTGCCCTA-
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135610801 133 + 135778131 aagaccatagccacacaccattaaatcaggtacagggccctgctaagcacagagcagt-tgtgagagcac-ggccccacactcgcaacaccaatcctgCTTCCCAGGTTTAGCACAAAAACACATCATTGCCCTA-
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190722588 130 - 190850796 aagacaacaactacaaaccattaaatcaggtgca-ggccttgctaggcacagagcact-tgagaatgcac-tgtcacacact--caACACCAATCCTGTCTCTCAGGTTTAGTACAAAAACACATTATCGCCCTA-
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18165745 136 -  59632846 aagacatcaacagcaaagttttaaatcaagtgcaggatccttctaagcatagaatcctgtgcaaatgtataggtcacacaactactaagtcagccctgACTATCACGCCTAGGGCAAAACCTCATTGCTGACCCTT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87875227 5635 - 129401213 I

a score=475002.000000
s hg38.chr4_KI270925v1_alt    493296 127 +    555799 AGATCCAG-GGAGTCTTCTGGGTGATCATTGAGA--------AAAAAATCCTGGAAACGCATCTTTTGTTTGCCTCTGGGAGAGTGGGG----ACTGGCAGGAAAACATAGGTAGCACTTTCCAAAAATACAAATAAAAT
s panTro4.chr4             193212708 127 + 193495092 AGATCCAA-GGAGTCTTCTGGGTGATCATTGAGA--------AAAAAATCCTGGAAACGCATCTTTTGTTTGCCTCTGGGAGAGTGGGG----ACTGGCAGGAAAACATAGGTAGCACTTTCCAAAAATACAAATAAAAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198283570 127 + 198332218 AAATCCAG-GGACTCTTCTGGGTGATCATTGAGA--------AAAAAATCCTGGAAACCCATCTTTTGTTTGCCTCTGGGAGAGTGGGG----ACTGGCAGGAAAACATAGGTAGCACTTTCCAAAAATACAAATAAAAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113958085 127 + 115148730 AGATCCAG-GGACACTTCTGGGTGATCATTGAGA--------AAAAAATCCTGGAAACCCATCTTTAGTTTGCCTCTGGGAGAGTGGGG----ACTGGCAGGAAAACATAGGTAGCACTTTccaaaaatacaaacaaaat
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183866650 135 + 184069350 ACATCCAG-GGACTCTTCTGGGCGATCACTGAGGAAAAAAAAAAAAAATCCTGGAAACCCATCTTTTGTTTGCCTTTGTGAGAGCGGGG----ACTGGCAGGAAAACATAGGCAGCACTTCCCaaaaatacaaataaaat
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189259994 134 + 189454096 ACATCCAG-GGACTCTTCTGGGCGATCACTGAGG-AAAAAAAAAAAAATCCTGGAAACCCATCTTTTGTTTGCCTTTGTGAGAGCGGGG----ACTGGCAGGAAAACATAGGCAGCACTTCCCAAAAATACAAATAAAAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178677936 134 + 178775436 AGATCCAG-GGACTCTTCTGGGCGatcattgagg-aaaaaaaaaaaaatcctggaaaccCATCTTTTGTTTGCCTCTGTGAGAGCGGGG----ACTGGCAGGAAAACATAGGCAGCActttccaaaaatacaaataaaat
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135610934 130 + 135778131 AGATCCAG-GGACTCTTCTGGGCGATCATTGAGG-----AAAAAAAAATCCTGGAAACCCATCTTTTGTTTGCCTCTGTGAGAGTGGGG----ACTGGCAGGAAAACATAGGCAGCACTTCCCAAAAATACAAATAAAAT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190722718 126 - 190850796 AGATCCAA-AGACTCTTCTGTGTGATCATTGAGA---------AAAAGTGCTGGAAACCCATCTTTTGTTTGCCTCTGGGAGAGTGGGG----ACTGGCAGGAGAAAATAGGTAGTACTTTCTAAAAATACCAACAAAAT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87880862 132 - 129401213 agactcagcaGATTCTTCTGGGTGATCTTTAAAG-------AAAAGGATCCTGGCAGTTCACCTTTTGTTTGCTTCTGGGAGGCTGGAAACTCACTGGCAAGGAAA-ATGGGTGGCATGTTCCAAAAACACAAATAGAAT
i mm10.chr8                I 5635 I 15
s canFam3.chr16             18165881 122 -  59632846 AGATCTAG-GAACTTTTGTAGGTTATCATTTAGA---------AAAAGCCCTAGAAACCCAAATTTC-TTTGCCTTTGGGAGAGGGGAT----ACTGGCAAGAAAA-ATAACTAGCACTTCC--AAAATACAAATAAAGT
i canFam3.chr16            C 0 C 0

a score=14952.000000
s hg38.chr4_KI270925v1_alt    493423 11 +    555799 Tggcccagtgc
s panTro4.chr4             193212835 11 + 193495092 Tggcccagtgc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198283697 11 + 198332218 Tggcccagtgc
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113958212 11 + 115148730 tggccccatgc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183866785 10 + 184069350 t-gcccgctgc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189260128 10 + 189454096 T-gcccgctgc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178678070 10 + 178775436 t-gcctgctgc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135611064 10 + 135778131 T-GCCCGCTGA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190722844 11 - 190850796 Tggctgggtgt
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18166003 10 -  59632846 -AGCCTAGTGC
i canFam3.chr16            C 0 I 146
e mm10.chr8                 87880994 15 - 129401213 I

a score=763908.000000
s hg38.chr4_KI270925v1_alt    493434 322 +    555799 agtggcttaggtctgt---------------------------aatcccatcactttgggaggccaaggtgggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggcgaaaccccgtctctactaaaaatacaaaaattagccgg-------------------------------------------------------------------------------------------------------------------------------------------------gcg-------------tggtggcgggcatctgtaatcccagctacttgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagctgagatggcgccactgcactccagcctgggcgacagagcgagactccgtctcaaaataaataaaTTAATTAATTTAATTAAATGTAAAACCCCCCAACCCCC-
s panTro4.chr4             193212846 322 + 193495092 agtggcttaggtctgt---------------------------aatcccatcactttgggaggtcaaggtgggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggcgaaaccccgtctctactaaaaatacaaaaattagccgg-------------------------------------------------------------------------------------------------------------------------------------------------gca-------------tggtggcgggcatctgtaatcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagctgagatggcatcactgcactccagcctgggccacagagcaagactccatctcaaaataaataaaTTAATTAATTTAATTAAATGTAAAACCCCCCACCCCCC-
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198283708 321 + 198332218 ggtggcttaggtctgt---------------------------aatcccagcactttgggaggccaaggtgggtggatcacctgaggtcaggagttcaagaccagcctggccaacgtggcgaaaccccgtctctactaaaaatacaaaaattagccgg-------------------------------------------------------------------------------------------------------------------------------------------------gtg-------------tggtggcgggtgcctgtaatcccagctactcaggaggctgaggcaggagaatggcatgaacctgggaggcagagcttgcaatgagccgagatcataccactgcactccagcctgggcagcagagcaagactccatctcaaaattaattaattaattaattaaATCAAATGTAATA-CCCCCACCCCCC-
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113958223 347 + 115148730 agtggcttaggtctgtaatcccagcactttgggaggctgaggcaatcccagcactttgggaggctgaggcaggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagccag-------------------------------------------------------------------------------------------------------------------------------------------------gtg-------------cagtggcaggcgcctgtaatgccagctactcaggaggctgaggcaggagaatggcatgaacccgggaggcagagcttgcagtgagccaagattgcgccactgcactccagcctgggcgacagtgtgagact-cgtctcaaaataaataaaTTAATTAATTAAAGTAAATGTAATA-CCCCCACCCCCC-
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183866795 398 + 184069350 ggtggctcacgcctgt---------------------------gatcccagcagtttgggaggccaaggttggtgaattacctgaggtcaggagtttaagaccag-ctggccaacatggcaaaaccctgtctctactaaaaacacaaaaatcagccagacatggtgacgtgcctgctactcgggaggctcaggtgggagaattgcttgaactggggaggcagaggttgca-------------------------------------------------------------------------gtgagccgggattggatggtggcaggcgcctgtaatcccagctagtcaggaggctgaggcaggagaatcacttgaacctgggaagcggaggttgcagtgagccaagatcgcaccactgcactccagcccgggcgac------agact-catctcaaaataaattaattaaataatttaattaaCTGTAATACCCCCTACC-CCC-
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189260138 398 + 189454096 ggtggctcacgcctgt---------------------------gatcccagcagtttgggaggccaaggttggtgaattacctgaggtcaggagtttaagaccag-ctggccaacatggcaaaaccctgtctctactaaaaacacaaaaatcagccagacatggtgacgtgcctgctactcgggaggctca--------------------------------------ggtgggagaattgcttgaactggggaggcagaggttgca-----------------------------------gtgagccgggattggatggtggcacgcgcctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacctgggaagcggaggttgcagtgagccaagatcgcaccactgcactccagcccgggcgac------agact-catctcaaaataaaTTAATTAAATAATTTAATTAACTGTAATACCCCCTACC-CCC-
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178678080 400 + 178775436 ggtggctcacgcctgt---------------------------gatcctagtagtttgggaggccaaggttggtgaattacctgaggtcaggagtttaagaccagcctggccaacatggcaaaaccctgtctttactaaaaacacaaaaatcagccagacatggtgacgtgcctgctacttgggaggctca--------------------------------------ggtgggagaactgcttgaactggggaggcagaggttgca-----------------------------------gtgagccgggattggatggtggcaggtgcccgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacctgggaagcagagggtgcagcgagccaagatcctaccactgcactccagcccgggcgac------agact-catctcaaaataaattaattaaataatttaattaactgTAATACCCCCTACCACCa-
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135611074 397 + 135778131 ggtggctcatgcctgt---------------------------aatcccagcagtttgggaggccaaggttggtgaattacctgaggtcaggagttcaagaccagcctggccaacatggcaaaaccctgtctctactaaaaacacaaaaatcagccagacatggtgacgtgcctgctactcgggaggctca----------------------------------------------------------------------------ggtgggagaattgcttgaactggggaggcagaggcagtgagccaggattggatggtggcaggtgcccgtaatcccagctactcaagaggctgaggcaggagaatcacttgaacctggaaagcggaggttgcagtgagccaagatcgcaccactgcactccagcctaggcgac------agaCT-CATCTCAAAATATATTAATTAAATAATTTAATTAACTGTAATACCCCTTACCCCCC-
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190722855 319 - 190850796 ggtggctcatgcctgg---------------------------aatcccagtactttgggaggccaaggtgggtggatcacttgaggtcaggagttcaagaccagtctggcaaacatggcaaaaccctgtttctactaaaaatacaaaaatcagccag-------------------------------------------------------------------------------------------------------------------------------------------------gcg-------------tggtggcaggcacctgtaatcccagatattcaggaggctgaggcaagagaatcgcttgaacaccaggggtggagcttgccgtgagccggggtcgcaccacttcactctagcctgggcgacagagcaagactctgtctctaaataaat-aagtaaataa---aataaaaTATAATAACTCCCGTCCCCCA
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87880994  15 - 129401213 I
e canFam3.chr16             18166013 146 -  59632846 I

a score=11081.000000
s hg38.chr4_KI270925v1_alt    493756 5 +    555799 AAAAC
s panTro4.chr4             193213168 5 + 193495092 AAAAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198284029 5 + 198332218 AAAAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113958570 5 + 115148730 AAAAC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183867193 5 + 184069350 CAAAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189260536 5 + 189454096 CAAAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178678480 5 + 178775436 aaaaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135611471 5 + 135778131 AAAAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190723174 5 - 190850796 AAAAA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87881009 5 - 129401213 AACAA
i mm10.chr8                I 15 C 0
e canFam3.chr16             18166013 146 -  59632846 I

a score=2116828.000000
s hg38.chr4_KI270925v1_alt    493761 593 +    555799  
s panTro4.chr4             193213173 592 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198284034 592 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113958575 585 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183867198 569 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189260541 569 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178678485 564 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135611476 569 + 135778131  
i chlSab2.chr7             C 0 I 342
s calJac3.chr3             190723179 577 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87881014 598 - 129401213  
i mm10.chr8                C 0 C 0
s canFam3.chr16             18166159 594 -  59632846  
i canFam3.chr16            I 146 C 0

a score=16008.000000
s hg38.chr4_KI270925v1_alt    494354  25 +    555799 GTGTCTT----------------------------------------------------------------------------------------------------------------------------CCCAGAGGCTGAATCACC
s panTro4.chr4             193213765 116 + 193495092 GTGTCTTCCCAGAGGCTGAATCACCGG---------------------------------AACCAGTTCACATTGCTTAGTACCAGATCACAAAATCTTCATGAGTCGTATTACTCATAGGACAGTGTCTACCCAGAGGCTGAATCACC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198284626  25 + 198332218 GTGTCTA----------------------------------------------------------------------------------------------------------------------------TCCAGAGGCTGAATCACT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113959160 110 + 115148730 GGGTCTACCCAGAGGCTGAATCACTGGAACCAGTTCACATTGCTTAGTACCAGATCACAAAACCAGTTC---------------------------------------TATTACTGATAGGACAGTGTCTTCCCAGAGGTTGAATCACC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183867767  25 + 184069350 ----------------------------------------------------------------------------------------------------------------------------GTATCTACCCAGAGGCCGAATCACC
i rheMac3.chr5             C 0 I 150
s macFas5.chr5             189261110  25 + 189454096 ----------------------------------------------------------------------------------------------------------------------------GTATCTACCCAGAGGCCGAATCACC
i macFas5.chr5             C 0 I 340
s papAnu2.chr5             178679049  25 + 178775436 ----------------------------------------------------------------------------------------------------------------------------GTATCTACCCAGAGGCCAAATCACC
i papAnu2.chr5             C 0 I 188
s chlSab2.chr7             135612387  25 + 135778131 ----------------------------------------------------------------------------------------------------------------------------GTGTCTACACAGAGGCCGAATCTCC
i chlSab2.chr7             I 342 C 0
s calJac3.chr3             190723756  23 - 190850796 ------------------------------------------------------------------------------------------------------------------------------GTCTAACTAGAGGATGGACCACT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87881612  25 - 129401213 ----------------------------------------------------------------------------------------------------------------------------GTATCTATCCAGAGGCTGAGTCACA
i mm10.chr8                C 0 C 0
s canFam3.chr16             18166753  25 -  59632846 ----------------------------------------------------------------------------------------------------------------------------GTATTTACCTGGAGGCTGAATCATC
i canFam3.chr16            C 0 C 0

a score=786225.000000
s hg38.chr4_KI270925v1_alt    494379 214 +    555799 GGAACCAGTTCACATTGCTTAGTACCAGATCACAAAATCTTCATG-------------------------------------------------------------------------------------------AGTCATATTACTTTTTCCTTTTTTCTT-CACTTCACATCTTAGTAAAAACACATTCATTTTCCAAACTCATCATTTCCAGCAGCATTCA-TTTCAACCATAATTTCCTGGAC-AATCTATTCA-TTCAGGTCCCTTTTTT----------------GGAGTTTGTATT----TGACTACGCTGCACTAAAGCC
s panTro4.chr4             193213881 214 + 193495092 GGAACCAGTTCACATTGCTTAGTACCAGATCACAAAATCTTCATG-------------------------------------------------------------------------------------------AGTCATATTACTTTTTCCTTTTTTCTT-CACTTCACATCTTAGTAAAAACACATTCATTTTCCAAACTCAGCATTTCCAGCAGCATTCA-TTTCAACCATAATTTCCTGGTC-AATCTATTCA-TTGAGGTCCCTTTTTT----------------CGAGTTTGTATT----TGACTGCGCTGCACTAAAGCC
i panTro4.chr4             C 0 I 543
s ponAbe2.chr4             198284651 305 + 198332218 GGAACCAGTTCACGTTGCTTAGTACCAGATCACAAAATCTTCATGAGTCATATTACTGATAGGACAGTACCTACTTAGAGGCTGAATCACGGGAACCAGTTCACGTTGCTTAGTACCAGATCACAAAATCTTCATAAGTCATATTACTTTTTCCTTTTTTCTT-CACTTCACATCTTAGTAAAAACACATTCATTTTCCAAACTCATCATTTCCAGCAGCATTCA-TTTCAACCATAATTTCCTGGTC-AATCTATTCA-TTCAGGTCCCTTTTCT----------------GGAGTTTGTATT----TGAGTACGCTGCACTACAGCC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113959270 214 + 115148730 GGAACCAGTTCATATTGCTTAGTACCAGATTACAAAATCTTCATG-------------------------------------------------------------------------------------------AGTCATATTACTTTTTCCTTTTTTCTT-CACTTCACATCTTAGTACAAACACATTCATTTTCCAAACTCATCATTTCCAGCAGCATTCA-TTTCAACCATAATTTCCTGGTC-AATCTATTCA-TTCAGGTCCCTTTTTT----------------GGAGTTTGTATT----TGAACATGCTGCACTAAAGCC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183867942 214 + 184069350 GGAACCAGTTCACATTGCTTAGTACCAGATCACAAAATCTTTATG-------------------------------------------------------------------------------------------AGTCATATGACTTTTTCCCTTTTTCTT-CCCTTCACATCTTAATAAAAACACATTCATTTTCCAAACTCATCATTTCCAGCAGCATTCA-TTTCAACCACAATTTCCTGGCC-AATCTATTCA-TTCAGGTCCCATTTTT----------------GGAGTTTGTATT----TGAATACGCTGCACTAAAGCC
i rheMac3.chr5             I 150 C 0
s macFas5.chr5             189261475 214 + 189454096 GGAACCAGTTCACATTGCTTAGTACCAGATCACAAAATCTTTATG-------------------------------------------------------------------------------------------AGTCATATGACTTTTTCCCTTTTTCTT-CCCTTCACATCTTAATAAAAACACATTCATTTTCCAAACTCATCATTTCCAGCAGCATTCA-TTTCAACCACAATTTCCTGGCC-AATCTATTCA-TTCAGGTCCCATTTTT----------------GGAGTTTGTATT----TGAATACGCTGCACTAAAGCC
i macFas5.chr5             I 340 C 0
s papAnu2.chr5             178679262 214 + 178775436 GGAACCAGTTCACATTGCTTAGTACCAGATCACAAAATCTTTATG-------------------------------------------------------------------------------------------AGTCATAtgactttttccctttttctt-cccttcacaTCTTAATAAAAACACATTCATTTTCCAAACTCATCATTTCCAGCAGCATTCA-TTTCAACCACAATTTCCTGGCC-AATTTATTCA-TTCAGGTCCCATTTTT----------------GGAGTTTTTATT----TGAATACGCTGCACTAAAGCC
i papAnu2.chr5             I 188 C 0
s chlSab2.chr7             135612412 212 + 135778131 GGAACCAGTTCACATTGCTTAGTACCAGATCACAAAATCTTCATG-------------------------------------------------------------------------------------------AGTTATATGCCTTTTTCCCTTTTTCTT-CACTTCACATCTTAATAAAA--ACATTCATTTTCCAAACTCATCATTTCCAGCAGCATTCA-TTTCAACTACAATTTCCTGGCC-AACCTATTCA-TTCAGGTCCCATTTTT----------------GGAGTCTGTATT----TGAATACGCTGCACTAAAGCC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190723779 210 - 190850796 GCAACCAGTTCACATTGTTTGGTACCAGATCACAAAATCTTCATA-------------------------------------------------------------------------------------------AGTCATATTAATTTTTTCTTTTTTCTT-CACTTTACATCTTAGTAAAAACACACTCG---TCTAAACACATAATTTCCAGCAGCATTCA-TTTCAATCATAATTTCCTGGCC-AGTCTCTTCA-TTTGGGT-CCTTTTTT----------------GGAGTTGATATT----TGAATACACTGCTCTAAAACC
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87881637 234 - 129401213 GGTACTGGGGCACACTCTTTAGCACTAGATCACTAAATCTTCATA-------------------------------------------------------------------------------------------AATCATATTCCCTTTTCC--TTCCCCC-CACTTCACATTGCTGTGAAAACACATTTATATTCCAAATCCATCATTTCCAGTGCCATTCATTTTCAACCTTAATTTCCTGGCC-TATCTATTTGCTTTAGATACTTTTTTTATTGGTGGGGGGGGAGGGAGGTGGGATTTGTCTGAACACACAGTTTTCAAGGC
i mm10.chr8                C 0 C 0
s canFam3.chr16             18166778 221 -  59632846 CTAACTAGTCCACTTTGTTTACTACCAGATCTCAAAATCATCATA-------------------------------------------------------------------------------------------AATCATCTTTCTTTCTTCTTTTTTCTTCCATTTCACATCTCAGGGAAAACATATTCATTTTCCAAACTCATCATTTCCAGCAGTGTTCATTTTCAACCTTAATTTCCTGGCCAAACCTATTCA-TTCAGATGCCTTTTTT----------------GGAGGTGGTATTTGTGTGAATACACTACATTAGAGCT
i canFam3.chr16            C 0 C 0

a score=547160.000000
s hg38.chr4_KI270925v1_alt    494593 150 +    555799 TGCC-TTTTTTTAGAACTGTGCTCATCGGCTACATAACCCCTGAGAAAAGGTTAATATATCCCCTTAAACATTCTTAAGTGCCAAATCTC-TCCTATTCCATGAGCTTAAAACCATATC-AGGTAATTTCAGATCACTTGAACTATGGTTCCG
s panTro4.chr4             193214638 150 + 193495092 TGCC-TTTTTTTAGAACTGTGCTCATCTGCTACATAACCCCTGAGAAAAGGTTAATATAGCCCCTCAAACATTCTTAAGTGCCAAATCTC-TCCTATTCCATGAGCTTAAAACCATATC-AGGTAATTTCAGATCACTTGAACTATGGTTCCG
i panTro4.chr4             I 543 C 0
s ponAbe2.chr4             198284956 151 + 198332218 TGTCATTTTTTTAGAACTGTTCTCATCTGCTACATAACCCCTGACAAAAGGTTAATATATCCCCTTAAACATTCTTAAGTTCCAAATCTC-TCCTACTCCATGAGCTTAAAACCATACC-ACGTAATTTCAGATCACTTGAACTATGGTTCCG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113959484 151 + 115148730 TGTAATTTTTTTAGAACTGTTCTCATCTGCTACATAATCCCTGAGAAAAGGTTAATATATCCCCTTAAACATTCTTAAGTTTCAAATCTC-TCCTATTCCATGAGCTTAAAATCATATC-AGGTAATTTCAGATCACTTGAACTATGGTTCTG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183868156 150 + 184069350 AGTAATTTTTGTACAACTGGTCTCATCTGCTACATAACCCCTGAGAAAAGGTTAATATAT--CCTTATACATTCTCAAGTTCCAAATCTCTTCCTATTCCATGAGCTTAAAACTGTGTC-AGGTAATTTCGGATCACTGGAACTATAGCTCTG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189261689 150 + 189454096 AGTAATTTTTGTACAACTGGTCTCATCTGCTACATAACCCCTGAGAAAAGGTTAATATAT--CCTTATACATTCTCAAGTTCCAAATCTCTTCCTATTCCATGAGCTTAAAACTGTGTC-AGGTAATTTCGGATCACTGGAACTATGGTTCCG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178679476 150 + 178775436 AGTAATTTTTGTACAACTGGTCTCATTTGCTACATAACCCCTGAGAAAAGGTTAATATAT--CCTTATACATTCTCAAGTTCCAAATCTCTTCCTATTCCATGAGCTTAAAACTGTGTC-AGGTAATTTCGGATCATTGGAACTATGGTTCCG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135612624 150 + 135778131 AGTGATTTTTGGAGAACTGGTCTCATCTGCTACATAACCCCTAAGAAAAGGTTAATATAC--CCTTATACATCCTCAAGTCCCAAATCTCTTCCTATTCCATGAGCTTAAAACTCTGTC-AGGTAATTTCGGATCCCTGGAACTATGGTTCCC
i chlSab2.chr7             C 0 I 27
s calJac3.chr3             190723989 149 - 190850796 AGTGATTTTTTCAGGGCTGTTCTCATCTGCTACATAACCCCTGAGAAAAGGTGAATATAT--CTTTATACATTCT-AAGTTCCAAATCTCTTCCTGTTCCATGAGCTTAAAACCATATC-AGGTAATTTCGGATAACTTGAACTATGGCTCTG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87881871 141 - 129401213 AGAAACTTCTTTAGCGCTCTCCTCATCGGCTGGATAACCTCTGAGAAAAGGTTAGTATAT--CCTT----------AAGTTCCAAATCTCTTCCTATCCTATAAGCTTAAAGTCACATCAAGGTAATTTCACATCACTTGGCCTCTGGCTCTG
i mm10.chr8                C 0 C 0
s canFam3.chr16             18166999 151 -  59632846 AGAAATTTTTTTAGAACTCTTCTCATCTGCTATGTAACCTCTGAGAAAAGGTTAATATAT--CCTTATATATTCTTTAGTTTCAAATCTCTTCCTATTCCATGAGCTTAAAATCATATCAAGGTAATTTTAGATCATTGGAACTATGGCTCTG
i canFam3.chr16            C 0 C 0

a score=5094.000000
s hg38.chr4_KI270925v1_alt    494743 5 +    555799 TGCTG-
s panTro4.chr4             193214788 5 + 193495092 TGCCG-
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198285107 5 + 198332218 GGCTG-
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113959635 5 + 115148730 TGCTG-
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183868306 5 + 184069350 TGCCG-
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189261839 5 + 189454096 TGCCG-
i macFas5.chr5             C 0 T 9
s papAnu2.chr5             178679626 5 + 178775436 TGCCG-
i papAnu2.chr5             C 0 C 0
s mm10.chr8                 87882012 5 - 129401213 -GCCCA
i mm10.chr8                C 0 C 0
e canFam3.chr16             18167150 0 -  59632846 C
e calJac3.chr3             190724138 0 - 190850796 C
e chlSab2.chr7             135612774 27 + 135778131 I

a score=27052.000000
s hg38.chr4_KI270925v1_alt    494748 17 +    555799 TGTCCCTCGGCTCTCTC
s panTro4.chr4             193214793 17 + 193495092 TGTCCCTCGGCTCTCTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198285112 17 + 198332218 TGTCCCTCAGCTCTCTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113959640 17 + 115148730 TGTCCCTCAGCTCTCTC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183868311 17 + 184069350 TGTCCCTCAGCTCTCTC
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178679631 17 + 178775436 TGTCCCTCAGCTCTCTC
i papAnu2.chr5             C 0 C 0
s mm10.chr8                 87882017 17 - 129401213 TCGCCTTCAGCTTGCCC
i mm10.chr8                C 0 C 0
e canFam3.chr16             18167150  0 -  59632846 C
e calJac3.chr3             190724138  0 - 190850796 C
e chlSab2.chr7             135612774 27 + 135778131 I
e macFas5.chr5             189261844  9 + 189454096 T

a score=11136.000000
s hg38.chr4_KI270925v1_alt    494765 6 +    555799 CCATTC
s panTro4.chr4             193214810 6 + 193495092 CTATTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198285129 6 + 198332218 CTATTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113959657 6 + 115148730 CTATTC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183868328 6 + 184069350 CTACTT
i rheMac3.chr5             C 0 I 5
s papAnu2.chr5             178679648 6 + 178775436 CTATTC
i papAnu2.chr5             C 0 I 5
s chlSab2.chr7             135612801 6 + 135778131 CTATTC
i chlSab2.chr7             I 27 C 0
s mm10.chr8                 87882034 6 - 129401213 CAATTT
i mm10.chr8                C 0 C 0
e canFam3.chr16             18167150 0 -  59632846 C
e calJac3.chr3             190724138 0 - 190850796 C
e macFas5.chr5             189261844 9 + 189454096 T

a score=3276.000000
s hg38.chr4_KI270925v1_alt    494771 1 +    555799 T
s panTro4.chr4             193214816 1 + 193495092 T
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198285135 1 + 198332218 T
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113959663 1 + 115148730 T
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183868339 1 + 184069350 T
i rheMac3.chr5             I 5 C 0
s macFas5.chr5             189261835 1 + 189454096 T
i macFas5.chr5             T 9 C 0
s papAnu2.chr5             178679659 1 + 178775436 T
i papAnu2.chr5             I 5 T 37
s chlSab2.chr7             135612807 1 + 135778131 T
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87882040 1 - 129401213 T
i mm10.chr8                C 0 C 0
e canFam3.chr16             18167150 0 -  59632846 C
e calJac3.chr3             190724138 0 - 190850796 C

a score=7943.000000
s hg38.chr4_KI270925v1_alt    494772 5 +    555799 CCTTG
s panTro4.chr4             193214817 5 + 193495092 CCTTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198285136 5 + 198332218 CCATG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113959664 5 + 115148730 CCCTG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183868340 5 + 184069350 CTGTG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189261836 5 + 189454096 CCGTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178679623 5 + 178775436 CCGTG
i papAnu2.chr5             T 37 C 0
s chlSab2.chr7             135612808 5 + 135778131 CCGTG
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87882041 5 - 129401213 GATTG
i mm10.chr8                C 0 I 895
e canFam3.chr16             18167150 0 -  59632846 C
e calJac3.chr3             190724138 0 - 190850796 C

a score=75471.000000
s hg38.chr4_KI270925v1_alt    494777 35 +    555799 CCGTGTCTCTCGGCTCTCTCC-----TATTCTCCGTGCCG
s panTro4.chr4             193214822 34 + 193495092 -CGTGTCCCTCAGCTCTCTCC-----TATTCTCCGTGCCG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198285141 35 + 198332218 CTGTGTCCCTCAGTTCTCTCC-----TATGCTCTGTGCTG
i ponAbe2.chr4             C 0 I 192
s nomLeu3.chr7b            113959669 35 + 115148730 CTGTGTCCCTCAGTTCTCTCC-----TATTCTCCATGCCG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183868345 40 + 184069350 CCGTGTCCCTCAGCTCTCTCCTACTTTATTCTCCGTGCCG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189261841 40 + 189454096 CCGTGTCCCTCAGCTCTCTCCTATTCTATTTTCCGTGCCG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178679628 40 + 178775436 CCGTGTCCCTCAGCTCTCTCCTATTCTATTTTCCGTGCCG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135612813 40 + 135778131 CCGTGTCCCTCAGCTCTCTCCTACGTTATTCTCCGTGCCG
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150  0 -  59632846 C
e calJac3.chr3             190724138  0 - 190850796 C

a score=44165.000000
s hg38.chr4_KI270925v1_alt    494812 18 +    555799 TGTCCCTCGGCTCTCTCC
s panTro4.chr4             193214856 18 + 193495092 TGTCCCTCGGCTCTCTCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198285368 18 + 198332218 TGTCCCTCAGTTCTCTCC
i ponAbe2.chr4             I 192 C 0
s nomLeu3.chr7b            113959704 18 + 115148730 TGTCCCTCAGTTCGCTCC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183868385 18 + 184069350 TGTCCCTCAGCTCTCTCC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189261881 18 + 189454096 TGTCCCTCAGCTCTCTCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178679668 18 + 178775436 TGTCCCTCAGCTCTCTCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135612853 18 + 135778131 TGTCCCTCAGCTCTCTCC
i chlSab2.chr7             C 0 I 42
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150  0 -  59632846 C
e calJac3.chr3             190724138  0 - 190850796 C

a score=10923.000000
s hg38.chr4_KI270925v1_alt    494830 6 +    555799 CATTCT
s panTro4.chr4             193214874 6 + 193495092 TATTCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198285386 6 + 198332218 TATTCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113959722 6 + 115148730 TATTCT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183868403 6 + 184069350 TATTCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189261899 6 + 189454096 TATTCT
i macFas5.chr5             C 0 I 42
s papAnu2.chr5             178679686 6 + 178775436 TATTCT
i papAnu2.chr5             C 0 I 42
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150 0 -  59632846 C
e calJac3.chr3             190724138 0 - 190850796 C
e chlSab2.chr7             135612871 42 + 135778131 I

a score=15039.000000
s hg38.chr4_KI270925v1_alt    494836 8 +    555799 CCGTGCCG
s panTro4.chr4             193214880 8 + 193495092 CCGTGCCG
i panTro4.chr4             C 0 I 32
s ponAbe2.chr4             198285392 8 + 198332218 CCGTGCCG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113959728 8 + 115148730 CCATGCCG
i nomLeu3.chr7b            C 0 T 97
s rheMac3.chr5             183868409 8 + 184069350 CCGTGCTG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189261947 8 + 189454096 CCGTGCCG
i macFas5.chr5             I 42 C 0
s papAnu2.chr5             178679734 8 + 178775436 CCGTGCCG
i papAnu2.chr5             I 42 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150 0 -  59632846 C
e calJac3.chr3             190724138 0 - 190850796 C
e chlSab2.chr7             135612871 42 + 135778131 I

a score=21329.000000
s hg38.chr4_KI270925v1_alt    494844 16 +    555799 TGTCCCTCGGCTCTCT
s panTro4.chr4             193214920 16 + 193495092 TGTCCCTCGGCTCTCT
i panTro4.chr4             I 32 C 0
s ponAbe2.chr4             198285400 16 + 198332218 TGTCCCTCAGCTCTCT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183868417 16 + 184069350 TGTCCCTTGGCTCTCT
i rheMac3.chr5             C 0 I 3
s macFas5.chr5             189261955 16 + 189454096 TGTCCCTCAGCTCTCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178679742 16 + 178775436 TGTCCCTCAGCTCTCT
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150  0 -  59632846 C
e calJac3.chr3             190724138  0 - 190850796 C
e chlSab2.chr7             135612871 42 + 135778131 I
e nomLeu3.chr7b            113959736 97 + 115148730 T

a score=2000.000000
s hg38.chr4_KI270925v1_alt    494860 2 +    555799 CC
s panTro4.chr4             193214936 2 + 193495092 CC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198285416 2 + 198332218 CC
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189261971 2 + 189454096 CC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178679758 2 + 178775436 CC
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150 0 -  59632846 C
e calJac3.chr3             190724138 0 - 190850796 C
e chlSab2.chr7             135612871 42 + 135778131 I
e rheMac3.chr5             183868433 3 + 184069350 I
e nomLeu3.chr7b            113959736 97 + 115148730 T

a score=4850.000000
s hg38.chr4_KI270925v1_alt    494862 4 +    555799 CATT
s panTro4.chr4             193214938 4 + 193495092 TATT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198285418 4 + 198332218 TATT
i ponAbe2.chr4             C 0 T 279
s macFas5.chr5             189261973 4 + 189454096 TATT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178679760 4 + 178775436 TATT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135612913 4 + 135778131 TATT
i chlSab2.chr7             I 42 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150 0 -  59632846 C
e calJac3.chr3             190724138 0 - 190850796 C
e rheMac3.chr5             183868433 3 + 184069350 I
e nomLeu3.chr7b            113959736 97 + 115148730 T

a score=4720.000000
s hg38.chr4_KI270925v1_alt    494866 8 +    555799 CTCCTTG-C
s panTro4.chr4             193214942 9 + 193495092 CTCCGTGCC
i panTro4.chr4             C 0 C 0
s macFas5.chr5             189261977 8 + 189454096 CTCCGTG-C
i macFas5.chr5             C 0 I 1
s papAnu2.chr5             178679764 8 + 178775436 CTCCGTG-C
i papAnu2.chr5             C 0 I 1
s chlSab2.chr7             135612917 8 + 135778131 CTCTGTG-C
i chlSab2.chr7             C 0 I 1
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150 0 -  59632846 C
e calJac3.chr3             190724138 0 - 190850796 C
e rheMac3.chr5             183868433 3 + 184069350 I
e nomLeu3.chr7b            113959736 97 + 115148730 T
e ponAbe2.chr4             198285422 279 + 198332218 T

a score=82165.000000
s hg38.chr4_KI270925v1_alt    494874 55 +    555799 GTGTCTCTCGGCTCTC-----TCCCATTCTCCGTGCCCTGTCCCTCGGCTCTCTCCCATT
s panTro4.chr4             193214951 55 + 193495092 GTGTCCCTCGGCTCTC-----TCCTATTCTCCGTGCCGTGTCCCTCGGCTCTCTCCTATT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198285143 55 + 198332218 GTGTCCCTCAGTTCTC-----TCCTATGCTCTGTGCTGCGTCCCTCAGTTCTCTCCTATT
i ponAbe2.chr4             T 279 C 0
s nomLeu3.chr7b            113959639 55 + 115148730 GTGTCCCTCAGCTCTC-----TCCTATTCTCCCTGCTGTGTCCCTCAGTTCTCTCCTATT
i nomLeu3.chr7b            T 97 C 0
s macFas5.chr5             189261986 60 + 189454096 GTGTCCCTTGGCTCTCTATTTTCCTATTTTCCATGCTGTGTCCCTCAGCTTTCCCTTATT
i macFas5.chr5             I 1 T 101
s papAnu2.chr5             178679773 60 + 178775436 GTGTCCCTTGGCTctctattttcctattttccatGCTGTGTCCCTCAGCTGTCCCCTATT
i papAnu2.chr5             I 1 T 101
s chlSab2.chr7             135612926 60 + 135778131 GTGTCCCTCAGCTCTCTCCTGTTCTATTCTCCGTGCCGTGTCCCTCAGCTCTCTCCTATT
i chlSab2.chr7             I 1 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150  0 -  59632846 C
e calJac3.chr3             190724138  0 - 190850796 C
e rheMac3.chr5             183868433  3 + 184069350 I

a score=57732.000000
s hg38.chr4_KI270925v1_alt    494929 33 +    555799 CTCCGTGCCGTGTCCCTCGGCTCTCGCCCATTC
s panTro4.chr4             193215006 33 + 193495092 CTCCGTGCCGTGTCCCTCGGCTCTCTCCTATTC
i panTro4.chr4             C 0 T 255
s ponAbe2.chr4             198285198 33 + 198332218 CTCCGTGCTGTGTCCCTCATTTCTCTCCTATTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113959694 33 + 115148730 CTCCATGCCGTGTCCCTCAGTTCGCTCCTATTC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189261945 33 + 189454096 CTCCGTGCCGTGTCCCTCAGCTCTCTCCTATTC
i macFas5.chr5             T 101 T 143
s papAnu2.chr5             178679732 33 + 178775436 CTCCGTGCCGTGTCCCTCAGCTCTCTCCTATTC
i papAnu2.chr5             T 101 T 143
s chlSab2.chr7             135612986 33 + 135778131 CTCCATGCCGTGTCCCTCAGCTCTCTCCTATTC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150  0 -  59632846 C
e calJac3.chr3             190724138  0 - 190850796 C
e rheMac3.chr5             183868433  3 + 184069350 I

a score=43833.000000
s hg38.chr4_KI270925v1_alt    494962 25 +    555799 TCCGTGCCGTGTCCCTCGGCTCTCT
s panTro4.chr4             193214784 25 + 193495092 TCCGTGCCGTGTCCCTCGGCTCTCT
i panTro4.chr4             T 255 C 0
s ponAbe2.chr4             198285231 25 + 198332218 TCTGTGCTGTGTCCCTCAGTTCTCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113959727 25 + 115148730 TCCATGCCGTGTCCCTCAGTTCTCT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189261835 25 + 189454096 TCCGTGCCGTGTCCCTCAGCTCTCT
i macFas5.chr5             T 143 C 0
s papAnu2.chr5             178679622 25 + 178775436 TCCGTGCCGTGTCCCTCAGCTCTCT
i papAnu2.chr5             T 143 C 0
s chlSab2.chr7             135613019 25 + 135778131 TCCATGCTGTGTCCCTTGGCTCTCT
i chlSab2.chr7             C 0 T 165
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150  0 -  59632846 C
e calJac3.chr3             190724138  0 - 190850796 C
e rheMac3.chr5             183868433  3 + 184069350 I

a score=8250.000000
s hg38.chr4_KI270925v1_alt    494987 14 +    555799 CCCATTCTCCTTGC
s panTro4.chr4             193214809 14 + 193495092 CCTATTCTCCTTGC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198285256 14 + 198332218 CCTATTCTCCGTGC
i ponAbe2.chr4             C 0 T 94
s nomLeu3.chr7b            113959752 14 + 115148730 CCCATTCTCCATGC
i nomLeu3.chr7b            C 0 I 1
s macFas5.chr5             189261860  8 + 189454096 CCTATTCT------
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178679647  8 + 178775436 CCTATTCT------
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150  0 -  59632846 C
e calJac3.chr3             190724138  0 - 190850796 C
e chlSab2.chr7             135613044 165 + 135778131 T
e rheMac3.chr5             183868433  3 + 184069350 I

a score=11774.000000
s hg38.chr4_KI270925v1_alt    495001 33 +    555799 GTGTCCCTCGGCTCTCTCCCATTCTCCGTGCCC
s panTro4.chr4             193214823 33 + 193495092 GTGTCCCTCAGCTCTCTCCTATTCTCCGTGCCG
i panTro4.chr4             C 0 I 32
s nomLeu3.chr7b            113959767 33 + 115148730 GTGTCCCTCAGTTCTCTCCCATTCTCCATGCCG
i nomLeu3.chr7b            I 1 T 64
s macFas5.chr5             189261868 13 + 189454096 --------------------ATTTTCCGTGCCG
i macFas5.chr5             C 0 T 37
s papAnu2.chr5             178679655 13 + 178775436 --------------------ATTTTCCGTGCCG
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150  0 -  59632846 C
e calJac3.chr3             190724138  0 - 190850796 C
e chlSab2.chr7             135613044 165 + 135778131 T
e rheMac3.chr5             183868433  3 + 184069350 I
e ponAbe2.chr4             198285270 94 + 198332218 T

a score=26549.000000
s hg38.chr4_KI270925v1_alt    495034 21 +    555799 TGTCCCTCGGCTCTCTCCCAT
s panTro4.chr4             193214888 21 + 193495092 TGTCCCTCGGCTCTCTCCTAT
i panTro4.chr4             I 32 C 0
s ponAbe2.chr4             198285176 21 + 198332218 CGTCCCTCAGTTCTCTCCTAT
i ponAbe2.chr4             T 94 C 0
s nomLeu3.chr7b            113959736 21 + 115148730 TGTCCCTCAGTTCTCTCCCAT
i nomLeu3.chr7b            T 64 C 0
s macFas5.chr5             189261844 21 + 189454096 TGTCCCTCAGCTCTCTCCTAT
i macFas5.chr5             T 37 C 0
s papAnu2.chr5             178679668 21 + 178775436 TGTCCCTCAGCTCTCTCCTAT
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150  0 -  59632846 C
e calJac3.chr3             190724138  0 - 190850796 C
e chlSab2.chr7             135613044 165 + 135778131 T
e rheMac3.chr5             183868433  3 + 184069350 I

a score=5922.000000
s hg38.chr4_KI270925v1_alt    495055 3 +    555799 TCT
s panTro4.chr4             193214909 3 + 193495092 TCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198285197 3 + 198332218 TCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113959757 3 + 115148730 TCT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189261865 3 + 189454096 TCT
i macFas5.chr5             C 0 I 5
s papAnu2.chr5             178679689 3 + 178775436 TCT
i papAnu2.chr5             C 0 T 32
s chlSab2.chr7             135612879 3 + 135778131 TCT
i chlSab2.chr7             T 165 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150 0 -  59632846 C
e calJac3.chr3             190724138 0 - 190850796 C
e rheMac3.chr5             183868433 3 + 184069350 I

a score=54789.000000
s hg38.chr4_KI270925v1_alt    495058 35 +    555799 CCGTGCCGTGTCCCTCGGCTCTCTCC-----TATTCTCTG
s panTro4.chr4             193214912 35 + 193495092 CCGTGACGTGTCCCTCGGCTCTCTCC-----TATTCTCCG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198285200 35 + 198332218 CCGTGCTGTGTCCCTCATTTCTCTCC-----TATTCTCTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113959760 35 + 115148730 CCATGCCGTGTCCCTCAGTTCTCTCC-----CATTCTCCA
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189261873 40 + 189454096 CCGTGCCGTGTCCCTCAGCTCTCTCCTATTCTATTCTCTG
i macFas5.chr5             I 5 C 0
s papAnu2.chr5             178679660 40 + 178775436 CCGTGCCGTGTCCCTCAGCTCTCTCCTATTCTATTCTCTG
i papAnu2.chr5             T 32 C 0
s chlSab2.chr7             135612882 40 + 135778131 CTGTGCCGTGTCCCTCAGCTCTCTCCTATGTTATTCTCTG
i chlSab2.chr7             C 0 T 148
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150  0 -  59632846 C
e calJac3.chr3             190724138  0 - 190850796 C
e rheMac3.chr5             183868433  3 + 184069350 I

a score=145021.000000
s hg38.chr4_KI270925v1_alt    495093 84 +    555799 TGCCGTGTCCCTCGGCTCTCTCC-----TATTCTCCGTGCCGTGTCCCTCGGCTCTCTCC-----CATTCTCCGTGCCGTGTCCCTCGGCTCTC
s panTro4.chr4             193214947 84 + 193495092 TGCCGTGTCCCTCGGCTCTCTCC-----TATTCTCCGTGCCGTGTCCCTCGGCTCTCTCC-----TATTCTCCGTGCCGTGTCCCTCGGCTCTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198285235 84 + 198332218 TGCTGTGTCCCTCAGTTCTCTCC-----TATTCTCCGTGCTGTGTCCCTCAGTTCTCTCC-----TATTCTCCGTGCTGTGTCCCTCAGTTCTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113959795 84 + 115148730 TGCCGTGTCCCTCAGTTCTCTCC-----TATTCTCCATGCCGTGTCCCTCAGTTCTCTCC-----TATTCTCCATGCTGTGTCCCTCAATTCTC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189261913 89 + 189454096 TGCCGTGTCCCTCAGCTCTCTCCTACTTTACTCTCCGTGCCGTGTCCCTCAGCTCTCTCC-----TATTCTCCGTGCTGTGTCCCTTGGCTCTC
i macFas5.chr5             C 0 T 62
s papAnu2.chr5             178679700 89 + 178775436 TGCCGTGTCCCTCAGCTCTCTCCTACTTTATTCTCCGTGCCGTGTCCCTCAGCTCTCTCC-----TATTCTCCGTGCTGTGTCCCTTGGCTctc
i papAnu2.chr5             C 0 T 62
s chlSab2.chr7             135612774 94 + 135778131 TGCCGTGTCCCTCAGCTCTCTCCTATTCTATTCTCCGTGCCGTGTCCCTCAGCTCTCTCCTACGTTATTCTCCGTGCCGTGTCCCTCAGCTCTC
i chlSab2.chr7             T 148 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150  0 -  59632846 C
e calJac3.chr3             190724138  0 - 190850796 C
e rheMac3.chr5             183868433  3 + 184069350 I

a score=5640.000000
s hg38.chr4_KI270925v1_alt    495177 6 +    555799 TCCTAT
s panTro4.chr4             193215031 6 + 193495092 TCCTAT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198285319 6 + 198332218 TCCTAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113959879 6 + 115148730 TCCTAT
i nomLeu3.chr7b            C 0 C 0
s chlSab2.chr7             135612868 6 + 135778131 TCCTAT
i chlSab2.chr7             C 0 I 37
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150 0 -  59632846 C
e calJac3.chr3             190724138 0 - 190850796 C
e papAnu2.chr5             178679789 62 + 178775436 T
e macFas5.chr5             189262002 62 + 189454096 T
e rheMac3.chr5             183868433 3 + 184069350 I

a score=546.000000
s hg38.chr4_KI270925v1_alt    495183 1 +    555799 T
s panTro4.chr4             193215037 1 + 193495092 T
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198285325 1 + 198332218 T
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113959885 1 + 115148730 T
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150 0 -  59632846 C
e calJac3.chr3             190724138 0 - 190850796 C
e chlSab2.chr7             135612874 37 + 135778131 I
e papAnu2.chr5             178679789 62 + 178775436 T
e macFas5.chr5             189262002 62 + 189454096 T
e rheMac3.chr5             183868433 3 + 184069350 I

a score=1808.000000
s hg38.chr4_KI270925v1_alt    495184 2 +    555799 CT
s panTro4.chr4             193215038 2 + 193495092 CT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198285326 2 + 198332218 CT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113959886 2 + 115148730 CT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189261940 2 + 189454096 TT
i macFas5.chr5             T 62 I 37
s papAnu2.chr5             178679727 2 + 178775436 TT
i papAnu2.chr5             T 62 I 37
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150 0 -  59632846 C
e calJac3.chr3             190724138 0 - 190850796 C
e chlSab2.chr7             135612874 37 + 135778131 I
e rheMac3.chr5             183868433 3 + 184069350 I

a score=5762.000000
s hg38.chr4_KI270925v1_alt    495186 5 +    555799 CCGTG
s panTro4.chr4             193215040 5 + 193495092 CCTTG
i panTro4.chr4             C 0 T 128
s ponAbe2.chr4             198285328 5 + 198332218 CCGTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113959888 5 + 115148730 CCATG
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189261979 5 + 189454096 CCGTG
i macFas5.chr5             I 37 C 0
s papAnu2.chr5             178679766 5 + 178775436 CCGTG
i papAnu2.chr5             I 37 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150 0 -  59632846 C
e calJac3.chr3             190724138 0 - 190850796 C
e chlSab2.chr7             135612874 37 + 135778131 I
e rheMac3.chr5             183868433 3 + 184069350 I

a score=14785.000000
s hg38.chr4_KI270925v1_alt    495191 19 +    555799 CCCTGTCCCTCGGCTCTCT-----
s panTro4.chr4             193214917 19 + 193495092 ACGTGTCCCTCGGCTCTCT-----
i panTro4.chr4             T 128 C 0
s ponAbe2.chr4             198285333 19 + 198332218 CTGTGTCCCTCAGTTCTCT-----
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113959893 18 + 115148730 CCGTGTCCCT-AGTTCTCT-----
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189261984 24 + 189454096 CTGTGTCCCTTGGCTCTCTATTTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178679771 24 + 178775436 CTGTGTCCCTTGGCTctctatttt
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150  0 -  59632846 C
e calJac3.chr3             190724138  0 - 190850796 C
e chlSab2.chr7             135612874 37 + 135778131 I
e rheMac3.chr5             183868433  3 + 184069350 I

a score=53379.000000
s hg38.chr4_KI270925v1_alt    495210 35 +    555799 CCCATTCTCTGTGCCCTGTCCCTCGGCTCTCTCCT
s panTro4.chr4             193214936 35 + 193495092 CCTATTCTCCGTGCCGTGTCCCTCGGCTCTCTCCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198285352 35 + 198332218 CCTATTCTCCGTGCTCTGTCCCTCAGTTCTCTCCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113959911 35 + 115148730 CCTATTCTCCATGCCGTGTCCCTCAGTTCTCTCCT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189262008 35 + 189454096 CCTATTTTCCATGCTGTGTCCCTCAGCTTTCCCTT
i macFas5.chr5             C 0 T 101
s papAnu2.chr5             178679795 35 + 178775436 cctattttccatGCTGTGTCCCTCAGCTGTCCCCT
i papAnu2.chr5             C 0 T 101
s chlSab2.chr7             135612911 35 + 135778131 GTTATTCTCTGTGCCGTGTCCCTCAGCTCTCTCCT
i chlSab2.chr7             I 37 I 5
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150  0 -  59632846 C
e calJac3.chr3             190724138  0 - 190850796 C
e rheMac3.chr5             183868433  3 + 184069350 I

a score=43834.000000
s hg38.chr4_KI270925v1_alt    495245 24 +    555799 ATTCTCCGTGCCCTGTCCCTCGGC
s panTro4.chr4             193214971 24 + 193495092 ATTCTCCGTGCCGTGTCCCTCGGC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198285387 24 + 198332218 ATTCTCCGTGCCGTGTCCCTCAGC
i ponAbe2.chr4             C 0 T 128
s nomLeu3.chr7b            113959946 24 + 115148730 ATTCTCCATGCCGTGTCCCTCAGT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189261942 24 + 189454096 ACTCTCCGTGCCGTGTCCCTCAGC
i macFas5.chr5             T 101 C 0
s papAnu2.chr5             178679729 24 + 178775436 ATTCTCCGTGCCGTGTCCCTCAGC
i papAnu2.chr5             T 101 C 0
s chlSab2.chr7             135612951 24 + 135778131 ATTCTCCGTGCCGTGTCCCTCAGC
i chlSab2.chr7             I 5 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150  0 -  59632846 C
e calJac3.chr3             190724138  0 - 190850796 C
e rheMac3.chr5             183868433  3 + 184069350 I

a score=22666.000000
s hg38.chr4_KI270925v1_alt    495269 12 +    555799 TCTCTCCCATTC
s panTro4.chr4             193214995 12 + 193495092 TCTCTCCTATTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198285283 12 + 198332218 TCTCTCCTATTC
i ponAbe2.chr4             T 128 C 0
s nomLeu3.chr7b            113959970 12 + 115148730 TCTCTCCCATTC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189261966 12 + 189454096 TCTCTCCTATTC
i macFas5.chr5             C 0 T 143
s papAnu2.chr5             178679753 12 + 178775436 TCTCTCCTATTC
i papAnu2.chr5             C 0 T 143
s chlSab2.chr7             135612975 12 + 135778131 TCTCTCCTATTC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150  0 -  59632846 C
e calJac3.chr3             190724138  0 - 190850796 C
e rheMac3.chr5             183868433  3 + 184069350 I

a score=51064.000000
s hg38.chr4_KI270925v1_alt    495281 28 +    555799 TCCGTGCCGTGTCCCTCGGCTCTCTCCC
s panTro4.chr4             193215007 28 + 193495092 TCCGTGCCGTGTCCCTCGGCTCTCTCCT
i panTro4.chr4             C 0 I 10
s ponAbe2.chr4             198285295 28 + 198332218 TCCGTGCTGTGTCCCTCAGTTCTCTCCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113959982 28 + 115148730 TCCATGCCGTGTCCCTCAGTTCTCTCCC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189261835 28 + 189454096 TCCGTGCCGTGTCCCTCAGCTCTCTCCT
i macFas5.chr5             T 143 C 0
s papAnu2.chr5             178679622 28 + 178775436 TCCGTGCCGTGTCCCTCAGCTCTCTCCT
i papAnu2.chr5             T 143 C 0
s chlSab2.chr7             135612987 28 + 135778131 TCCATGCCGTGTCCCTCAGCTCTCTCCT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150  0 -  59632846 C
e calJac3.chr3             190724138  0 - 190850796 C
e rheMac3.chr5             183868433  3 + 184069350 I

a score=10823.000000
s hg38.chr4_KI270925v1_alt    495309 11 +    555799 ATTC-----TCCGTGC
s ponAbe2.chr4             198285323 11 + 198332218 ATTC-----TCCGTGC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113960010 11 + 115148730 ATTC-----TCCATGC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189261863 16 + 189454096 ATTCTATTTTCCGTGC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178679650 16 + 178775436 ATTCTATTTTCCGTGC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135613015 11 + 135778131 ATTC-----TCCATGC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150  0 -  59632846 C
e calJac3.chr3             190724138  0 - 190850796 C
e rheMac3.chr5             183868433  3 + 184069350 I
e panTro4.chr4             193215035 10 + 193495092 I

a score=30550.000000
s hg38.chr4_KI270925v1_alt    495320 18 +    555799 CGTGTCCCTCGGCTCTCT
s panTro4.chr4             193215045 18 + 193495092 CGTGTCCCTCGGCTCTCT
i panTro4.chr4             I 10 C 0
s ponAbe2.chr4             198285334 18 + 198332218 TGTGTCCCTCAGTTCTCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113960021 18 + 115148730 TGTGTCCCTCAATTCTCT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189261879 18 + 189454096 CGTGTCCCTCAGCTCTCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178679666 18 + 178775436 CGTGTCCCTCAGCTCTCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135613026 18 + 135778131 TGTGTCCCTTGGCTCTCT
i chlSab2.chr7             C 0 T 93
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150  0 -  59632846 C
e calJac3.chr3             190724138  0 - 190850796 C
e rheMac3.chr5             183868433  3 + 184069350 I

a score=8460.000000
s hg38.chr4_KI270925v1_alt    495338 6 +    555799 CCTATT
s panTro4.chr4             193215063 6 + 193495092 CCTATT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198285352 6 + 198332218 CCTATT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113960039 6 + 115148730 CCTATT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189261897 6 + 189454096 CCTATT
i macFas5.chr5             C 0 T 61
s papAnu2.chr5             178679684 6 + 178775436 CCTATT
i papAnu2.chr5             C 0 T 61
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150 0 -  59632846 C
e calJac3.chr3             190724138 0 - 190850796 C
e chlSab2.chr7             135613044 93 + 135778131 T
e rheMac3.chr5             183868433 3 + 184069350 I

a score=3078.000000
s hg38.chr4_KI270925v1_alt    495344 7 +    555799 CTCCTTG
s panTro4.chr4             193215069 7 + 193495092 CTCCTTG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198285358 7 + 198332218 CTCCGTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113960045 7 + 115148730 CTCCATG
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150 0 -  59632846 C
e calJac3.chr3             190724138 0 - 190850796 C
e chlSab2.chr7             135613044 93 + 135778131 T
e papAnu2.chr5             178679690 61 + 178775436 T
e macFas5.chr5             189261903 61 + 189454096 T
e rheMac3.chr5             183868433 3 + 184069350 I

a score=7809.000000
s hg38.chr4_KI270925v1_alt    495351  9 +    555799 CG-TGTCCCT
s panTro4.chr4             193215076  9 + 193495092 CG-TGTCCCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198285365 10 + 198332218 CTCTGTCCCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113960052 10 + 115148730 CTGTGTCCCT
i nomLeu3.chr7b            C 0 I 63
s macFas5.chr5             189261842  9 + 189454096 CG-TGTCCCT
i macFas5.chr5             T 61 C 0
s papAnu2.chr5             178679629  9 + 178775436 CG-TGTCCCT
i papAnu2.chr5             T 61 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150  0 -  59632846 C
e calJac3.chr3             190724138  0 - 190850796 C
e chlSab2.chr7             135613044 93 + 135778131 T
e rheMac3.chr5             183868433  3 + 184069350 I

a score=14334.000000
s hg38.chr4_KI270925v1_alt    495360 12 +    555799 CGGCTCTCTCCC
s panTro4.chr4             193215085 12 + 193495092 CGGCTCTCTCCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198285375 12 + 198332218 CAGTTCTCTCCT
i ponAbe2.chr4             C 0 T 128
s nomLeu3.chr7b            113960125 12 + 115148730 CAGTTCTCTCCC
i nomLeu3.chr7b            I 63 C 0
s macFas5.chr5             189261851 12 + 189454096 CAGCTCTCTCCT
i macFas5.chr5             C 0 I 5
s papAnu2.chr5             178679638 12 + 178775436 CAGCTCTCTCCT
i papAnu2.chr5             C 0 I 5
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150  0 -  59632846 C
e calJac3.chr3             190724138  0 - 190850796 C
e chlSab2.chr7             135613044 93 + 135778131 T
e rheMac3.chr5             183868433  3 + 184069350 I

a score=43278.000000
s hg38.chr4_KI270925v1_alt    495372 24 +    555799 ATTCTCCGTGCCGTGTCCCTCGGC
s panTro4.chr4             193215097 24 + 193495092 ATTCTCCGTGCCGTGTCCCTCGGC
i panTro4.chr4             C 0 T 32
s ponAbe2.chr4             198285259 24 + 198332218 ATTCTCCGTGCTGTGTCCCTCAGT
i ponAbe2.chr4             T 128 C 0
s nomLeu3.chr7b            113960137 24 + 115148730 ATTCTCCATGCCGTGTCCCTCAGT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189261868 24 + 189454096 ATTTTCCGTGCCGTGTCCCTCAGC
i macFas5.chr5             I 5 C 0
s papAnu2.chr5             178679655 24 + 178775436 ATTTTCCGTGCCGTGTCCCTCAGC
i papAnu2.chr5             I 5 C 0
s chlSab2.chr7             135612951 24 + 135778131 ATTCTCCGTGCCGTGTCCCTCAGC
i chlSab2.chr7             T 93 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150  0 -  59632846 C
e calJac3.chr3             190724138  0 - 190850796 C
e rheMac3.chr5             183868433  3 + 184069350 I

a score=12033.000000
s hg38.chr4_KI270925v1_alt    495396 6 +    555799 TCTCTC
s panTro4.chr4             193215089 6 + 193495092 TCTCTC
i panTro4.chr4             T 32 C 0
s ponAbe2.chr4             198285283 6 + 198332218 TCTCTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113960161 6 + 115148730 TCTCTC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189261892 6 + 189454096 TCTCTC
i macFas5.chr5             C 0 I 5
s papAnu2.chr5             178679679 6 + 178775436 TCTCTC
i papAnu2.chr5             C 0 I 5
s chlSab2.chr7             135612975 6 + 135778131 TCTCTC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150 0 -  59632846 C
e calJac3.chr3             190724138 0 - 190850796 C
e rheMac3.chr5             183868433 3 + 184069350 I

a score=60542.000000
s hg38.chr4_KI270925v1_alt    495402 37 +    555799 CTATTCTCTGTGCCGTGTCCCTCGGCTCTCTCC-----CATT
s panTro4.chr4             193215095 37 + 193495092 CTATTCTCCGTGCCGTGTCCCTCGGCTCTCTCC-----TATT
i panTro4.chr4             C 0 T 126
s ponAbe2.chr4             198285289 37 + 198332218 CTATTCTCCGTGCTGTGTCCCTCAGTTCTCTCC-----TATT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113960167 37 + 115148730 CCATTCTCCATGCCGTGTCCCTCAGTTCTCTCC-----CATT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189261903 42 + 189454096 CTATTCTCTGTGCCGTGTCCCTCAGCTCTCTCCTACTTTACT
i macFas5.chr5             I 5 C 0
s papAnu2.chr5             178679690 42 + 178775436 CTATTCTCTGTGCCGTGTCCCTCAGCTCTCTCCTACTTTATT
i papAnu2.chr5             I 5 C 0
s chlSab2.chr7             135612981 37 + 135778131 CTATTCTCCATGCCGTGTCCCTCAGCTCTCTCC-----TATT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150  0 -  59632846 C
e calJac3.chr3             190724138  0 - 190850796 C
e rheMac3.chr5             183868433  3 + 184069350 I

a score=45369.000000
s hg38.chr4_KI270925v1_alt    495439 26 +    555799 CTCCGTGCCCTGTCCCTCGGCTCTCT
s panTro4.chr4             193215006 26 + 193495092 CTCCGTGCCGTGTCCCTCGGCTCTCT
i panTro4.chr4             T 126 C 0
s ponAbe2.chr4             198285326 26 + 198332218 CTCCGTGCTGTGTCCCTCAGTTCTCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113960204 26 + 115148730 CTCCATGCCGTGTCCCTCAGTTCTCT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189261945 26 + 189454096 CTCCGTGCCGTGTCCCTCAGCTCTCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178679732 26 + 178775436 CTCCGTGCCGTGTCCCTCAGCTCTCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135613018 26 + 135778131 CTCCATGCTGTGTCCCTTGGCTCTCT
i chlSab2.chr7             C 0 T 241
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150  0 -  59632846 C
e calJac3.chr3             190724138  0 - 190850796 C
e rheMac3.chr5             183868433  3 + 184069350 I

a score=15822.000000
s hg38.chr4_KI270925v1_alt    495465 13 +    555799 CCTATTCTCTGTG
s panTro4.chr4             193215032 13 + 193495092 CCTATTCTCCTTG
i panTro4.chr4             C 0 T 221
s ponAbe2.chr4             198285352 13 + 198332218 CCTATTCTCCGTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113960230 13 + 115148730 CCCATTCTCCATG
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189261971 13 + 189454096 CCTATTCTCCGTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178679758 13 + 178775436 CCTATTCTCCGTG
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150  0 -  59632846 C
e calJac3.chr3             190724138  0 - 190850796 C
e chlSab2.chr7             135613044 241 + 135778131 T
e rheMac3.chr5             183868433  3 + 184069350 I

a score=-2600.000000
s hg38.chr4_KI270925v1_alt    495478 3 +    555799 CCC--
s ponAbe2.chr4             198285365 3 + 198332218 CTC--
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113960243 2 + 115148730 -TC--
i nomLeu3.chr7b            C 0 I 1
s macFas5.chr5             189261984 3 + 189454096 --CTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178679771 3 + 178775436 --CTG
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150 0 -  59632846 C
e calJac3.chr3             190724138 0 - 190850796 C
e chlSab2.chr7             135613044 241 + 135778131 T
e rheMac3.chr5             183868433 3 + 184069350 I
e panTro4.chr4             193215045 221 + 193495092 T

a score=10538.000000
s hg38.chr4_KI270925v1_alt    495481 8 +    555799 TGTCCCTC
s panTro4.chr4             193214824 8 + 193495092 TGTCCCTC
i panTro4.chr4             T 221 C 0
s ponAbe2.chr4             198285368 8 + 198332218 TGTCCCTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113960246 8 + 115148730 TGTCCCTC
i nomLeu3.chr7b            I 1 T 192
s macFas5.chr5             189261987 8 + 189454096 TGTCCCTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178679774 8 + 178775436 TGTCCCTT
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150 0 -  59632846 C
e calJac3.chr3             190724138 0 - 190850796 C
e chlSab2.chr7             135613044 241 + 135778131 T
e rheMac3.chr5             183868433 3 + 184069350 I

a score=6382.000000
s hg38.chr4_KI270925v1_alt    495489 11 +    555799 GGCTCTCTCCC-----
s panTro4.chr4             193214832 11 + 193495092 AGCTCTCTCCT-----
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198285376 11 + 198332218 AGTTCTCTCCT-----
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113960062 11 + 115148730 AGTTCTCTCCT-----
i nomLeu3.chr7b            T 192 C 0
s macFas5.chr5             189261995 16 + 189454096 GGCTCTCTATTTTCCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178679782 16 + 178775436 GGCTctctattttcct
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150  0 -  59632846 C
e calJac3.chr3             190724138  0 - 190850796 C
e chlSab2.chr7             135613044 241 + 135778131 T
e rheMac3.chr5             183868433  3 + 184069350 I

a score=20018.000000
s hg38.chr4_KI270925v1_alt    495500 12 +    555799 ATTCTCCGTGCC
s panTro4.chr4             193214843 12 + 193495092 ATTCTCCGTGCC
i panTro4.chr4             C 0 T 32
s ponAbe2.chr4             198285387 12 + 198332218 ATTCTCCGTGCC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113960073 12 + 115148730 ATTCTCCATGCC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189262011 12 + 189454096 ATTTTCCATGCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178679798 12 + 178775436 attttccatGCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135612803 12 + 135778131 ATTCTCCGTGCC
i chlSab2.chr7             T 241 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150  0 -  59632846 C
e calJac3.chr3             190724138  0 - 190850796 C
e rheMac3.chr5             183868433  3 + 184069350 I

a score=37337.000000
s hg38.chr4_KI270925v1_alt    495512 22 +    555799 GTGTCCCTCGGCTCTCTCCCAT
s panTro4.chr4             193214823 22 + 193495092 GTGTCCCTCAGCTCTCTCCTAT
i panTro4.chr4             T 32 C 0
s ponAbe2.chr4             198285399 22 + 198332218 GTGTCCCTCAGCTCTCTCCTAT
i ponAbe2.chr4             C 0 T 128
s nomLeu3.chr7b            113960085 22 + 115148730 GTGTCCCTCAGTTCTCTCCTAT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189262023 22 + 189454096 GTGTCCCTCAGCTTTCCCTTAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178679810 22 + 178775436 GTGTCCCTCAGCTGTCCCCTAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135612815 22 + 135778131 GTGTCCCTCAGCTCTCTCCTAC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150  0 -  59632846 C
e calJac3.chr3             190724138  0 - 190850796 C
e rheMac3.chr5             183868433  3 + 184069350 I

a score=681.000000
s hg38.chr4_KI270925v1_alt    495534 1 +    555799 T
s panTro4.chr4             193214845 1 + 193495092 T
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198285293 1 + 198332218 T
i ponAbe2.chr4             T 128 C 0
s nomLeu3.chr7b            113960107 1 + 115148730 T
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189262045 1 + 189454096 T
i macFas5.chr5             C 0 T 101
s papAnu2.chr5             178679832 1 + 178775436 T
i papAnu2.chr5             C 0 T 101
s chlSab2.chr7             135612837 1 + 135778131 G
i chlSab2.chr7             C 0 I 5
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150 0 -  59632846 C
e calJac3.chr3             190724138 0 - 190850796 C
e rheMac3.chr5             183868433 3 + 184069350 I

a score=17700.000000
s hg38.chr4_KI270925v1_alt    495535 10 +    555799 CTCCGTGCCC
s panTro4.chr4             193214846 10 + 193495092 CTCCGTGCCG
i panTro4.chr4             C 0 T 32
s ponAbe2.chr4             198285294 10 + 198332218 CTCCGTGCTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113960108 10 + 115148730 CTCCATGCCG
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189261945 10 + 189454096 CTCCGTGCCG
i macFas5.chr5             T 101 C 0
s papAnu2.chr5             178679732 10 + 178775436 CTCCGTGCCG
i papAnu2.chr5             T 101 C 0
s chlSab2.chr7             135612843 10 + 135778131 CTCCGTGCCG
i chlSab2.chr7             I 5 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150  0 -  59632846 C
e calJac3.chr3             190724138  0 - 190850796 C
e rheMac3.chr5             183868433  3 + 184069350 I

a score=53660.000000
s hg38.chr4_KI270925v1_alt    495545 32 +    555799 TGTCCCTCGGCTCTCTCC-----CATTCTCCGTGCCC
s panTro4.chr4             193214824 32 + 193495092 TGTCCCTCAGCTCTCTCC-----TATTCTCCGTGCCG
i panTro4.chr4             T 32 T 32
s ponAbe2.chr4             198285304 32 + 198332218 TGTCCCTCAGTTCTCTCC-----TATTCTCCGTGCTG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113960118 32 + 115148730 TGTCCCTCAGTTCTCTCC-----CATTCTCCATGCCG
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189261955 32 + 189454096 TGTCCCTCAGCTCTCTCC-----TATTCTCCGTGCTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178679742 32 + 178775436 TGTCCCTCAGCTCTCTCC-----TATTCTCCGTGCTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135612853 37 + 135778131 TGTCCCTCAGCTCTCTCCTATGTTATTCTCTGTGCCG
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150  0 -  59632846 C
e calJac3.chr3             190724138  0 - 190850796 C
e rheMac3.chr5             183868433  3 + 184069350 I

a score=31879.000000
s hg38.chr4_KI270925v1_alt    495577 21 +    555799 TGTCCCTCGGCTCTC-----TCCCAT
s panTro4.chr4             193214824 21 + 193495092 TGTCCCTCAGCTCTC-----TCCTAT
i panTro4.chr4             T 32 C 0
s ponAbe2.chr4             198285336 21 + 198332218 TGTCCCTCAGTTCTC-----TCCTAT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113960150 21 + 115148730 TGTCCCTCAGTTCTC-----TCCCAT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189261987 26 + 189454096 TGTCCCTTGGCTCTCTATTTTCCTAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178679774 26 + 178775436 TGTCCCTTGGCTctctattttcctat
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135612890 21 + 135778131 TGTCCCTCAGCTCTC-----TCCTAT
i chlSab2.chr7             C 0 T 32
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150  0 -  59632846 C
e calJac3.chr3             190724138  0 - 190850796 C
e rheMac3.chr5             183868433  3 + 184069350 I

a score=7484.000000
s hg38.chr4_KI270925v1_alt    495598 5 +    555799 TCTCT
s panTro4.chr4             193214845 5 + 193495092 TCTCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198285357 5 + 198332218 TCTCC
i ponAbe2.chr4             C 0 T 64
s nomLeu3.chr7b            113960171 5 + 115148730 TCTCC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189262013 5 + 189454096 TTTCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178679800 5 + 178775436 tttcc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135612879 5 + 135778131 TCTCT
i chlSab2.chr7             T 32 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150 0 -  59632846 C
e calJac3.chr3             190724138 0 - 190850796 C
e rheMac3.chr5             183868433 3 + 184069350 I

a score=501.000000
s hg38.chr4_KI270925v1_alt    495603 1 +    555799 G
s panTro4.chr4             193214850 1 + 193495092 G
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198285298 1 + 198332218 G
i ponAbe2.chr4             T 64 C 0
s nomLeu3.chr7b            113960176 1 + 115148730 A
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189262018 1 + 189454096 A
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178679805 1 + 178775436 a
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135612884 1 + 135778131 G
i chlSab2.chr7             C 0 T 111
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150 0 -  59632846 C
e calJac3.chr3             190724138 0 - 190850796 C
e rheMac3.chr5             183868433 3 + 184069350 I

a score=6612.000000
s hg38.chr4_KI270925v1_alt    495604 4 +    555799 TGCC
s panTro4.chr4             193214851 4 + 193495092 TGCC
i panTro4.chr4             C 0 T 32
s ponAbe2.chr4             198285299 4 + 198332218 TGCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113960177 4 + 115148730 TGCC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189262019 4 + 189454096 TGCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178679806 4 + 178775436 tGCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135612774 4 + 135778131 TGCC
i chlSab2.chr7             T 111 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150 0 -  59632846 C
e calJac3.chr3             190724138 0 - 190850796 C
e rheMac3.chr5             183868433 3 + 184069350 I

a score=39447.000000
s hg38.chr4_KI270925v1_alt    495608 23 +    555799 GTGTCCCTCGGCTCTCTCCTATT
s panTro4.chr4             193214823 23 + 193495092 GTGTCCCTCAGCTCTCTCCTATT
i panTro4.chr4             T 32 C 0
s ponAbe2.chr4             198285303 23 + 198332218 GTGTCCCTCAGTTCTCTCCTATT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113960181 23 + 115148730 GTGTCCCTCAGTTCTCTCCCATT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189262023 23 + 189454096 GTGTCCCTCAGCTTTCCCTTATT
i macFas5.chr5             C 0 T 138
s papAnu2.chr5             178679810 23 + 178775436 GTGTCCCTCAGCTGTCCCCTATT
i papAnu2.chr5             C 0 T 138
s chlSab2.chr7             135612778 23 + 135778131 GTGTCCCTCAGCTCTCTCCTATT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150  0 -  59632846 C
e calJac3.chr3             190724138  0 - 190850796 C
e rheMac3.chr5             183868433  3 + 184069350 I

a score=4011.000000
s hg38.chr4_KI270925v1_alt    495631 2 +    555799 CT
s panTro4.chr4             193214846 2 + 193495092 CT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198285326 2 + 198332218 CT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113960204 2 + 115148730 CT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189261908 2 + 189454096 CT
i macFas5.chr5             T 138 C 0
s papAnu2.chr5             178679695 2 + 178775436 CT
i papAnu2.chr5             T 138 C 0
s chlSab2.chr7             135612801 2 + 135778131 CT
i chlSab2.chr7             C 0 I 116
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150 0 -  59632846 C
e calJac3.chr3             190724138 0 - 190850796 C
e rheMac3.chr5             183868433 3 + 184069350 I

a score=97764.000000
s hg38.chr4_KI270925v1_alt    495633 59 +    555799 CTGTGCCGTGTCCCTCGGCTCTCTCC-----CATTCTCCGTGCCCTGTCCCTCGGCTCTCTCCC
s panTro4.chr4             193214848 59 + 193495092 CCGTGCCGTGTCCCTCGGCTCTCTCC-----TATTCTCCGTGCCGTGTCCCTCGGCTCTCTCCT
i panTro4.chr4             C 0 T 32
s ponAbe2.chr4             198285328 59 + 198332218 CCGTGCTGTGTCCCTCAGTTCTCTCC-----TATTCTCCGTGCTCTGTCCCTCAGTTCTCTCCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113960206 59 + 115148730 CCATGCCGTGTCCCTCAGTTCTCTCC-----CATTCTCCATGTCGTGTCCCTCAGTTCTCTCCC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189261910 64 + 189454096 CTGTGCCGTGTCCCTCAGCTCTCTCCTACTTTACTCTCCGTGCCGTGTCCCTCAGCTCTCTCCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178679697 64 + 178775436 CTGTGCCGTGTCCCTCAGCTCTCTCCTACTTTATTCTCCGTGCCGTGTCCCTCAGCTCTCTCCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135612919 64 + 135778131 CTGTGCCGTGTCCCTCAGCTCTCTCCTGTTCTATTCTCCGTGCCGTGTCCCTCAGCTCTCTCCT
i chlSab2.chr7             I 116 T 180
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150  0 -  59632846 C
e calJac3.chr3             190724138  0 - 190850796 C
e rheMac3.chr5             183868433  3 + 184069350 I

a score=7833.000000
s hg38.chr4_KI270925v1_alt    495692 4 +    555799 ATTC
s panTro4.chr4             193214875 4 + 193495092 ATTC
i panTro4.chr4             T 32 C 0
s ponAbe2.chr4             198285387 4 + 198332218 ATTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113960265 4 + 115148730 ATTC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189261974 4 + 189454096 ATTC
i macFas5.chr5             C 0 T 143
s papAnu2.chr5             178679761 4 + 178775436 ATTC
i papAnu2.chr5             C 0 T 143
s chlSab2.chr7             135612803 4 + 135778131 ATTC
i chlSab2.chr7             T 180 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150 0 -  59632846 C
e calJac3.chr3             190724138 0 - 190850796 C
e rheMac3.chr5             183868433 3 + 184069350 I

a score=52216.000000
s hg38.chr4_KI270925v1_alt    495696 27 +    555799 TCCGTGCCGTGTCCCTCGGCTCTCTCC
s panTro4.chr4             193214879 27 + 193495092 TCCGTGCCGTGTCCCTCGGCTCTCTCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198285391 27 + 198332218 TCCGTGCCGTGTCCCTCAGCTCTCTCC
i ponAbe2.chr4             C 0 T 192
s nomLeu3.chr7b            113960269 27 + 115148730 TCCATGCCGTGTCCCTCAGTTCTCTCC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189261835 27 + 189454096 TCCGTGCCGTGTCCCTCAGCTCTCTCC
i macFas5.chr5             T 143 C 0
s papAnu2.chr5             178679622 27 + 178775436 TCCGTGCCGTGTCCCTCAGCTCTCTCC
i papAnu2.chr5             T 143 C 0
s chlSab2.chr7             135612807 27 + 135778131 TCCGTGCCGTGTCCCTCAGCTCTCTCC
i chlSab2.chr7             C 0 I 5
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150  0 -  59632846 C
e calJac3.chr3             190724138  0 - 190850796 C
e rheMac3.chr5             183868433  3 + 184069350 I

a score=8533.000000
s hg38.chr4_KI270925v1_alt    495723 5 +    555799 CATTC
s panTro4.chr4             193214906 5 + 193495092 TATTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198285226 5 + 198332218 TATTC
i ponAbe2.chr4             T 192 C 0
s nomLeu3.chr7b            113960296 5 + 115148730 CATTC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189261862 5 + 189454096 TATTC
i macFas5.chr5             C 0 T 32
s papAnu2.chr5             178679649 5 + 178775436 TATTC
i papAnu2.chr5             C 0 T 32
s chlSab2.chr7             135612839 5 + 135778131 TATTC
i chlSab2.chr7             I 5 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150 0 -  59632846 C
e calJac3.chr3             190724138 0 - 190850796 C
e rheMac3.chr5             183868433 3 + 184069350 I

a score=220586.000000
s hg38.chr4_KI270925v1_alt    495728 135 +    555799 TCCGTGCCGTGTCCCTCGGCTCTCTCC-----CATTCTCCGTGCCGTGTCCCTCGGCTCTCTCC-----CATTCTCTGTGCCGTGTCCCTCGGCTCT--CTCC-----CATTCTCCGTGCCGTGTCCCTCGGCTCTCTCCCATTCTCCGTGC
s panTro4.chr4             193214911 135 + 193495092 TCCGTGACGTGTCCCTCGGCTCTCTCC-----TATTCTCCGTGCCGTGTCCCTCGGCTCTCTCC-----TATTCTCCGTGCCGTGTCCCTCGGCTCT--CTCC-----TATTCTCCGTGCCGTGTCCCTCGGCTCTCTCCTATTCTCCTTGC
i panTro4.chr4             C 0 T 64
s ponAbe2.chr4             198285231 135 + 198332218 TCTGTGCTGTGTCCCTCAGTTCTCTCC-----TATTCTCCGTGCTGTGTCCCTCAGTTCTCTCC-----TATTCTCCGTGCTGTGTCCCTCAGTTCT--CTCC-----TATTCTCCGTGCTGTGTCCCTCAGTTCTCTCCTATTCTCCGTGC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113960301 137 + 115148730 TCCATGCCGTGTCCCTCAGTTCTCTCC-----CATTCTCCATGCCGTGTCCCTCAGTTCTCTCC-----CATTCTCCATGCTGTGTCCCTCAGCTCTGACTCC-----TATTTTCTGTGCTGTGTCCCTCAGTTCTCTCCTATTCTGTGTGC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189261835 150 + 189454096 TCCGTGCCGTGTCCCTCAGCTCTCTCCTATTCTATTTTCCGTGCCGTGTCCCTCAGCTCTCTCCTATTCTATTCTCTGTGCCGTGTCCCTCAGCTCT--CTCCTACTTTACTCTCCGTGCCGTGTCCCTCAGCTCTCTCCTATTCTCCGTGC
i macFas5.chr5             T 32 C 0
s papAnu2.chr5             178679622 150 + 178775436 TCCGTGCCGTGTCCCTCAGCTCTCTCCTATTCTATTTTCCGTGCCGTGTCCCTCAGCTCTCTCCTATTCTATTCTCTGTGCCGTGTCCCTCAGCTCT--CTCCTACTTTATTCTCCGTGCCGTGTCCCTCAGCTCTCTCCTATTCTCCGTGC
i papAnu2.chr5             T 32 C 0
s chlSab2.chr7             135612844 150 + 135778131 TCCGTGCCGTGTCCCTCAGCTCTCTCCTATGTTATTCTCTGTGCCGTGTCCCTCAGCTCTCTCCTATGTTATTCTCTGTGCCGTGTCCCTCAGCTCT--CTCCTGTTCTATTCTCCGTGCCGTGTCCCTCAGCTCTCTCCTATTCTCCATGC
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150   0 -  59632846 C
e calJac3.chr3             190724138   0 - 190850796 C
e rheMac3.chr5             183868433   3 + 184069350 I

a score=74192.000000
s hg38.chr4_KI270925v1_alt    495863 50 +    555799 CGTGTCCCTCGGCTCTC-----TCCCATTCTCTGTGCCGTGTCCCTCGGCTCTCT
s panTro4.chr4             193214982 50 + 193495092 CGTGTCCCTCGGCTCTC-----TCCTATTCTCCGTGCCGTGTCCCTCGGCTCTCT
i panTro4.chr4             T 64 C 0
s ponAbe2.chr4             198285366 50 + 198332218 TCTGTCCCTCAGTTCTC-----TCCTATTCTCCGTGCCGTGTCCCTCAGCTCTCT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113960438 50 + 115148730 TGTGTCCCTCAGTTGTC-----TCCTATTCTCTACGCTGTGTCCCTCGGCTATCT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189261985 55 + 189454096 TGTGTCCCTTGGCTCTCTATTTTCCTATTTTCCATGCTGTGTCCCTCAGCTTTCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178679772 55 + 178775436 TGTGTCCCTTGGCTctctattttcctattttccatGCTGTGTCCCTCAGCTGTCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135612994 50 + 135778131 CGTGTCCCTCAGCTCTC-----TCCTATTCTCCATGCTGTGTCCCTTGGCTCTCT
i chlSab2.chr7             C 0 I 3
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150  0 -  59632846 C
e calJac3.chr3             190724138  0 - 190850796 C
e rheMac3.chr5             183868433  3 + 184069350 I

a score=7805.000000
s hg38.chr4_KI270925v1_alt    495913 6 +    555799 CCTATT
s panTro4.chr4             193215032 6 + 193495092 CCTATT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198285416 6 + 198332218 CCTATT
i ponAbe2.chr4             C 0 T 11
s nomLeu3.chr7b            113960488 6 + 115148730 CCTATT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189262040 6 + 189454096 CTTATT
i macFas5.chr5             C 0 T 101
s papAnu2.chr5             178679827 6 + 178775436 CCTATT
i papAnu2.chr5             C 0 T 101
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150 0 -  59632846 C
e calJac3.chr3             190724138 0 - 190850796 C
e chlSab2.chr7             135613044 3 + 135778131 I
e rheMac3.chr5             183868433 3 + 184069350 I

a score=3586.000000
s hg38.chr4_KI270925v1_alt    495919 20 +    555799 CTCCTTG-CATGTCCCTCGGT
s panTro4.chr4             193215038 20 + 193495092 CTCCTTG-CGTGTCCCTCGGC
i panTro4.chr4             C 0 I 63
s nomLeu3.chr7b            113960494  1 + 115148730 -----------------C---
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189261945 21 + 189454096 CTCCGTGCCGTGTCCCTCAGC
i macFas5.chr5             T 101 C 0
s papAnu2.chr5             178679732 21 + 178775436 CTCCGTGCCGTGTCCCTCAGC
i papAnu2.chr5             T 101 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150  0 -  59632846 C
e calJac3.chr3             190724138  0 - 190850796 C
e chlSab2.chr7             135613044  3 + 135778131 I
e rheMac3.chr5             183868433  3 + 184069350 I
e ponAbe2.chr4             198285422 11 + 198332218 T

a score=10370.000000
s hg38.chr4_KI270925v1_alt    495939 11 +    555799 TCTCTCCTATT
s panTro4.chr4             193215121 11 + 193495092 TCTCTCCTATT
i panTro4.chr4             I 63 C 0
s ponAbe2.chr4             198285411 11 + 198332218 TCTCTCCTATT
i ponAbe2.chr4             T 11 C 0
s macFas5.chr5             189261966 11 + 189454096 TCTCTCCTATT
i macFas5.chr5             C 0 I 29
s papAnu2.chr5             178679753 11 + 178775436 TCTCTCCTATT
i papAnu2.chr5             C 0 I 29
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150  0 -  59632846 C
e calJac3.chr3             190724138  0 - 190850796 C
e chlSab2.chr7             135613044  3 + 135778131 I
e rheMac3.chr5             183868433  3 + 184069350 I
e nomLeu3.chr7b            113960495  0 + 115148730 C

a score=8469.000000
s hg38.chr4_KI270925v1_alt    495950 32 +    555799 TTCATATTCTCCATCCTGTGTCCCTCAGCTCT
s panTro4.chr4             193215132 32 + 193495092 TTCATATTCTCCGTCCTGTGTCCCACAGCTCT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198285422 32 + 198332218 TTCATATTCTCCATCCTGTGTCCCTCAGCTCT
i ponAbe2.chr4             C 0 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150  0 -  59632846 C
e calJac3.chr3             190724138  0 - 190850796 C
e chlSab2.chr7             135613044  3 + 135778131 I
e papAnu2.chr5             178679764 29 + 178775436 I
e macFas5.chr5             189261977 29 + 189454096 I
e rheMac3.chr5             183868433  3 + 184069350 I
e nomLeu3.chr7b            113960495  0 + 115148730 C

a score=21407.000000
s hg38.chr4_KI270925v1_alt    495982 13 +    555799 TTCATGTTTTCCA
s panTro4.chr4             193215164 13 + 193495092 TTCATATTTTCTA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198285454 13 + 198332218 CTCATATTTTCCA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113960495  4 + 115148730 ---------TCCA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183868436 13 + 184069350 TTCCTATTTTCCA
i rheMac3.chr5             I 3 C 0
s macFas5.chr5             189262006 13 + 189454096 TTCCTATTTTCCA
i macFas5.chr5             I 29 C 0
s papAnu2.chr5             178679793 13 + 178775436 ttcctattttcca
i papAnu2.chr5             I 29 C 0
s chlSab2.chr7             135613047 13 + 135778131 TTCCTATTTTCCA
i chlSab2.chr7             I 3 C 0
e mm10.chr8                 87882046 895 - 129401213 I
e canFam3.chr16             18167150  0 -  59632846 C
e calJac3.chr3             190724138  0 - 190850796 C

a score=549244.000000
s hg38.chr4_KI270925v1_alt    495995 188 +    555799 TGCTGTGTCCCTCAGCTCTCTCCTATTTTGGTTGACAAGAATAGCATTAGATTAATTTTCAGCTTTCAAAAAAAA--GAGACAAACTTAAAATT-TTTT-AATATACCTCTTATAATTCTCAAAAACTACATTTTTTAAAAAATGTGCCTCTGGAATCAAATGATTTAAAAGTCTAATTTTTACACTTTTAG
s panTro4.chr4             193215177 190 + 193495092 TGCTGTGTCCCTCAGCTCTCTCCTATTTTGGTTGACAAGAATAGCATTAGATTAATTTTCAGCTTTCAAAAAAAAAAGAGACAAACTTAAAATT-TTTT-AATATACCTCTTACAATTCTCAAAAACTACATTTTTTAAAAAATGTGCCTCTGGAATCAAATGATTTAAAAGTCTAATTTTTACGCTTTTAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198285467 186 + 198332218 TGCTGTGTCCCTCAGCTCTCTCCTATTTTGGTTGACAAGAATAGCATTAGATTAATTTTCAGCTTTCAAAAAAAA---AGAGAAACTTAAAA-T-TTTT-AATATACCTTTTATAATTCTCAAAAACTACATTTTCTTAAAAAACTGCCTCTAGAATCAAATGATTTAAAAGTCTAACTTTTACACTTTTAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113960499 186 + 115148730 TGCTGTGACCCTCAGCTCTCTCCTATTTTAGTAGACAAGAATAGCATTAGATTAATTTTCAATTTTCAAAAAAAA----GACAAAAACAAAATT-TTTT-AATATACCTTTTACAATTCTCAAAAACTATATTTTTTTAAAAACCTGCCTCTGGAATCAAATTATTTAAAAGTGTAGTTTTTACACTTTTAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183868449 187 + 184069350 TGCTGTGTCCCTCAGCTTTCCCTTATTTCGGTTGACAAGAATAGTATTATATTAATTTTCAGGTTCAAAAAAAAC---AGACAAACTTAAACAT-TTTT-AGCATACCTCTTATAATTCTCAAAAACTACATTTTTTAAAAAACCTTCCTCTGGAATCAAATTATTTAAAAGTCTAATTTTTACACTTTTAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189262019 187 + 189454096 TGCTGTGTCCCTCAGCTTTCCCTTATTTCGGTTGACAAGAATAGTATTATATTAATTTTCAGGTTCAAAAAAAAC---AGACAAACTTAAACAT-TTTT-AGCATACCTCTTATAATTCTCAAAAACTACATTTTTTAAAAAACCTTCCTCTGGAATCAAATTATTTAAAAGTCTAATTTTTACACTTTTAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178679806 187 + 178775436 tGCTGTGTCCCTCAGCTGTCCCCTATTTCGGTTGACAAGAAtagtattatattaattttcaggTTCaaaaaaaCC---AGAcaaacttaaacat-tttt-agcaTACCTCTTATAATTCTcaaaaactacattttttaaaaaaccttcctctggaatcaaattatttaaaagtctaATTTTTACACTTTTAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135613060 184 + 135778131 TGCTGTGTCCCTCAGCTG-CCCCTATTTTGGTTGACAAGAATAGTATTATATTAATTTTCAGGTTCAAAAAAAAC---AGACAAACTTAAACAT-TTTT-AATATACCTCTTATAATTCTCAAAAACTACATTTCTTAAAAAACCTTCCTCCGGAATCAAATTATTT--AAGTCTAATTTTTATACTTTTAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190724138 188 - 190850796 TGCTCTGTCCCTCAGCTCTCTCCTATTTTACTTGACAAGAATAGCATTATATTGATTTTCAGGTTTCAAAAATAAAAGAGATAAACTTCAAATTGTTTT-AATATACCTCTTATAATTCTCAAAAACTACATTTTT---AAAAACTGCCTCTGGAATCAAATTATTTAAAGGCCTAATTTTTACACTTTTAG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18167150 168 -  59632846 TGCCAAGCCCCTCAGCTCTCTCCTATTTTGGTTGACAATGATGATGTTTTATTAATTTTCAGTCTCCAGAAATAAAAGTAGCACACTTAAAAAT-TTTTAAATATGCCTTTTACAGTTTCCAAAAATTACATTTT--GAAAAATTCACTTCTGGAAAAAAATTATTTAACA---------------------
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87882046 895 - 129401213 I

a score=2388215.000000
s hg38.chr4_KI270925v1_alt    496183 864 +    555799  
s panTro4.chr4             193215367 864 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198285653 867 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113960685 852 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183868636 860 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189262206 860 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178679993 849 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135613244 856 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190724326 871 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87882941 815 - 129401213  
i mm10.chr8                I 895 I 784
s canFam3.chr16             18167318 694 -  59632846  
i canFam3.chr16            C 0 C 0

a score=40467.000000
s hg38.chr4_KI270925v1_alt    497047 22 +    555799 AGGCACCAAGGACAGGTTT-----------------------------------------------------------------------CTT
s panTro4.chr4             193216231 22 + 193495092 AGGCACCAAGGACAGGTTT-----------------------------------------------------------------------CTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198286520 22 + 198332218 AGGCACCAAGGACAGGTTG-----------------------------------------------------------------------CTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113961537 93 + 115148730 AGGCGACAAGGACAGGTTGCTTCTGCTTTGCAGTTTTTACCAGGGCCTTCCCTTGAGGAAGACCATCCTTGGCAGGCCCAAAGCAGCTAACTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183869496 22 + 184069350 AGGCACCAAGGACAGGTTT-----------------------------------------------------------------------CTT
i rheMac3.chr5             C 0 I 85
s macFas5.chr5             189263066 22 + 189454096 AGGCACCAAGGACAGGTTT-----------------------------------------------------------------------CTT
i macFas5.chr5             C 0 I 70
s papAnu2.chr5             178680842 22 + 178775436 AGGCACCAAGGACAGGTTT-----------------------------------------------------------------------CTT
i papAnu2.chr5             C 0 I 70
s chlSab2.chr7             135614100 22 + 135778131 AGGCACCAAGGACAGGTTT-----------------------------------------------------------------------CTT
i chlSab2.chr7             C 0 I 96
s calJac3.chr3             190725197 53 - 190850796 AGGCACCAAGGGCAGCTTTCTCCTGCTCTGCAGTTTTCACAGGGCCTTCC----------------------------------------CTT
i calJac3.chr3             C 0 I 39
e mm10.chr8                 87883756 784 - 129401213 I
e canFam3.chr16             18168012  0 -  59632846 C

a score=11605.000000
s hg38.chr4_KI270925v1_alt    497069 15 +    555799 AAAAAGAGCTCTGA-A
s panTro4.chr4             193216253 16 + 193495092 AAAAAGAGCTCTGATT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198286542 16 + 198332218 AAAAAGAGCTCTGATT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113961630 16 + 115148730 AAAACGAGCTCTGATT
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189263158 14 + 189454096 -AAAAAGGGTCTGAG-
i macFas5.chr5             I 70 I 1
s papAnu2.chr5             178680934 14 + 178775436 -AAAAAGGGTCTGAC-
i papAnu2.chr5             I 70 I 1
s calJac3.chr3             190725289 16 - 190850796 AGAAACAGCTCTGATT
i calJac3.chr3             I 39 C 0
e mm10.chr8                 87883756 784 - 129401213 I
e canFam3.chr16             18168012  0 -  59632846 C
e chlSab2.chr7             135614122 96 + 135778131 I
e rheMac3.chr5             183869518 85 + 184069350 I

a score=570506.000000
s hg38.chr4_KI270925v1_alt    497084 195 +    555799 GCTCACCAGTAGCAACAAAATGGTGGCATATTAAAAGCTGAGACAGTTTCAACCAAGGGGGTGTTTAATCATCATATATGGGAAGTGCTAGAATAGTTTCTGGTGGGGAATCCATTTTTTAGTTCAAAATTGATGTTGACCTCTGAACATCTAGTCCCAATCAACAACCCTTGAAGCTTCAGCAGACACTATGTC
s panTro4.chr4             193216269 195 + 193495092 GCTCACCAGTAGCAACAAAATGTTGGCATATTAAAAGCTGAGACAGTTTCAAACAAGGGGGTGTTTAATCATCATATATGGGAAGTGCTAGAATAGTTTCTGGTGGGGAATCTATTTTTTAGTTCAAAATTGACGTTGACCTCTGAACGTCTAGTCTCAATCAACAACCCTTGAAGCTTCAGCAGACATTATGTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198286558 195 + 198332218 GTTCACCAGTAGCAACAAAATGGTGGCATATTAAAAGTTGAGACAGTTTCAATCATGGGGATGTTTAATCATCATATATAGGAAGTGCTAGAATAGTTTCTGGTAGGGAATCTATTTTTTAGTTCAAAATTGACCTTGACCTCTGAACATCTAGTCCCAATCAACAACCCTTGAAGCTTCAGCAGACACTATGTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113961646 195 + 115148730 GCTCACCAGTAGCAACAAAATGGTGGCACATTAAAAGCTGAGACGGTTTCAGCCATGGGAGAGTTTAATCATCATACATGGGAAGGGCTAGAATAGATTCTGGTGGGGAATTTATTTTTTGGCTCATAATTGACCTTGGCCTCTGAACATCTACTCCCAATCAACAACCCATGAAGCTTCAGCAGAAACTATGGC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183869603 193 + 184069350 GCTCACCAGTCGCAGCAAAATGGTGGCGCATTAAACGTCGGGACAGTTTCAGCCGTGGG-GTGTTTAATCAGCACATATGGGAAGGGCTAGAATAGTTTCTGGTGGGGAATCTATTTTTTC-TTCATAATTGACCTTCACCTCTGAAGGTCTAGTCCCGATCAACAACCCCTGTAGCTGCAGCAGGCACTACGGC
i rheMac3.chr5             I 85 C 0
s macFas5.chr5             189263173 193 + 189454096 GCTCACCAGTCGCAGCAAAATGGTGGCGCATTAAACGTCGGGACAGTTTCAGCCGTGGG-GTGTTTAATCAGCACATATGGGAAGGGCTAGAATAGTTTCTGGTGGGGAATCTATTTTTTC-TTCATAATTGACCTTCACCTCTGAAGGTCTAGTCCCGATCAACAACCCCTGTAGCTGCAGCAGGCACTACGGC
i macFas5.chr5             I 1 C 0
s papAnu2.chr5             178680949 193 + 178775436 GCTCACCAGTTGCAGCAAAATGGTGGCGCATTAAACGTCGGGACAGTTTCAGCCGTGGG-GTGTTTAATCAGCACATATGGGAAGGGCTAGAATAGTTTCTGGTGGggaatctattttttc-ttcataattgaCCTTCACCTCTGAAGGTCTAATCCCGATCAACAACCCCTGTAGCTGCAGCAGACACTACGGC
i papAnu2.chr5             I 1 C 0
s chlSab2.chr7             135614218 193 + 135778131 GCTCACCAGTCACAGCAAAATGGTGGCGCATTAAACGTCGGGACAGTTTCAGCCGTGGG-GTGTTTAATCAGCACATATGGGAAGGGCTAGAATAGTTTCTGGTGGGGAATCTATTTTTTC-TTCATAATTGACCTTCACCTCTGAAGGTCTAGTCCCGATCAACAACCCCCGTAGCTGCAGCAGACACTACGGC
i chlSab2.chr7             I 96 C 0
s calJac3.chr3             190725305 194 - 190850796 GCTTACCTTTAGCAACAAAATGGTGGCGCATTAAAAGTTGAGACAG-TTCTGCCATGGGGGTGTTTAATCATCACATACGAAAAGTGCTAGAATAGTTTATGGTGGGGAATCTATTTTTTAGTTCATAATTGACCTTGACCTCCAAACATCTAATTCCTATCAATAATCCATGAAGCTTCAGCAGACACTATGTC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18168012 183 -  59632846 --TTACCAGTAGCTATGAAATGGTGGAGCATTAAAAGTTTAGACAGTTGCAGGCATGGAGGTGTTTCCTCATCATATATGGGAAGTGCTGGAACATTTTCTGGTGGGGCAACC-TTTTTCAGTTCAGCATTGACCTTGATCTT---ACCCCT----CCCATCAACATCCCATTGAACTGCAGCAGACTCTGTT--
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87883756 784 - 129401213 I

a score=30316.000000
s hg38.chr4_KI270925v1_alt    497279 13 +    555799 AAAGGCTGCTTAG
s panTro4.chr4             193216464 13 + 193495092 AAAGGCTGCTCAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198286753 13 + 198332218 AAAGGCTGCTCAG
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183869796 13 + 184069350 AGAGGCTGCTTGG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189263366 13 + 189454096 AGAGGCTGCTTGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178681142 13 + 178775436 AGAGGCTGCTTGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135614411 13 + 135778131 AGAGGCTGCGTGG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190725499 13 - 190850796 AGAGGCTGCTGCG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18168195 11 -  59632846 --AGACTGCTAAG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87883756 784 - 129401213 I
e nomLeu3.chr7b            113961841  0 + 115148730 C

a score=15792.000000
s hg38.chr4_KI270925v1_alt    497292 6 +    555799 AGAAGA
s panTro4.chr4             193216477 6 + 193495092 AGAAGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198286766 6 + 198332218 AGAAGA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183869809 6 + 184069350 AGAAGA
i rheMac3.chr5             C 0 I 7
s macFas5.chr5             189263379 6 + 189454096 AGAAGA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178681155 6 + 178775436 AGAAGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135614424 6 + 135778131 AGAAGA
i chlSab2.chr7             C 0 I 7
s calJac3.chr3             190725512 6 - 190850796 AGAAGA
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87883756 784 - 129401213 I
e canFam3.chr16             18168206 0 -  59632846 C
e nomLeu3.chr7b            113961841 0 + 115148730 C

a score=2783.000000
s hg38.chr4_KI270925v1_alt    497298 4 +    555799 CATC
s panTro4.chr4             193216483 4 + 193495092 CATC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198286772 4 + 198332218 CACC
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189263385 4 + 189454096 GACC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178681161 4 + 178775436 GACC
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190725518 4 - 190850796 GACC
i calJac3.chr3             C 0 T 39
e mm10.chr8                 87883756 784 - 129401213 I
e canFam3.chr16             18168206 0 -  59632846 C
e chlSab2.chr7             135614430 7 + 135778131 I
e rheMac3.chr5             183869815 7 + 184069350 I
e nomLeu3.chr7b            113961841 0 + 115148730 C

a score=4856.000000
s hg38.chr4_KI270925v1_alt    497302 7 +    555799 CAGGAGA
s panTro4.chr4             193216487 7 + 193495092 CAGGAGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198286776 7 + 198332218 CAACAGA
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189263389 7 + 189454096 CAGCAGA
i macFas5.chr5             C 0 T 46
s papAnu2.chr5             178681165 7 + 178775436 CAGCAGA
i papAnu2.chr5             C 0 T 46
e mm10.chr8                 87883756 784 - 129401213 I
e canFam3.chr16             18168206 0 -  59632846 C
e calJac3.chr3             190725522 39 - 190850796 T
e chlSab2.chr7             135614430 7 + 135778131 I
e rheMac3.chr5             183869815 7 + 184069350 I
e nomLeu3.chr7b            113961841 0 + 115148730 C

a score=17310.000000
s hg38.chr4_KI270925v1_alt    497309 71 +    555799 CACTATGTCAGAGGCTGTTCAGAGGAGACACCCAGCAGACACTATGTCAGAGGCTGTTCAGAGGAGACACC
s panTro4.chr4             193216494 71 + 193495092 CACTATGTCAGAGGCTGTTCAGAGGAGACACCTAGCAGACACTATGTGAGAGGCTGCTCAGAGGAGACACC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198286783 71 + 198332218 CACTATGTCAGAGGCTTCTCAGAGAAGGGACCCAGCAGACACTATGTCAAAGGCTGCTCAGAGAAGACACC
i ponAbe2.chr4             C 0 C 0
e mm10.chr8                 87883756 784 - 129401213 I
e canFam3.chr16             18168206  0 -  59632846 C
e calJac3.chr3             190725522 39 - 190850796 T
e chlSab2.chr7             135614430  7 + 135778131 I
e papAnu2.chr5             178681172 46 + 178775436 T
e macFas5.chr5             189263396 46 + 189454096 T
e rheMac3.chr5             183869815  7 + 184069350 I
e nomLeu3.chr7b            113961841  0 + 115148730 C

a score=34339.000000
s hg38.chr4_KI270925v1_alt    497380 44 +    555799 CAGCAGACACTATGTCAGAGGCTGCTCAGAGAAGACACCCAGCA
s panTro4.chr4             193216565 44 + 193495092 CAGCAGAAACTATGTCAGAGGCTGCTCAGAGAAGACACCCAGCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198286854 44 + 198332218 AAGCAGACACTATGTCAAAGGCTGCTCAGAGGAGACACCCAGCA
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178681126 44 + 178775436 CAGCAGACACTACGGCAGAGGCTGCTTGGAGAAGAGACCCAGCA
i papAnu2.chr5             T 46 C 0
s calJac3.chr3             190725483 44 - 190850796 CAGCAGACACTATGTCAGAGGCTGCTGCGAGAAGAGACCCAGCA
i calJac3.chr3             T 39 T 44
e mm10.chr8                 87883756 784 - 129401213 I
e canFam3.chr16             18168206  0 -  59632846 C
e chlSab2.chr7             135614430  7 + 135778131 I
e macFas5.chr5             189263396 46 + 189454096 T
e rheMac3.chr5             183869815  7 + 184069350 I
e nomLeu3.chr7b            113961841  0 + 115148730 C

a score=1146.000000
s hg38.chr4_KI270925v1_alt    497424 2 +    555799 GA
s panTro4.chr4             193216609 2 + 193495092 GA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198286898 2 + 198332218 GA
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178681170 2 + 178775436 GA
i papAnu2.chr5             C 0 T 39
e mm10.chr8                 87883756 784 - 129401213 I
e canFam3.chr16             18168206 0 -  59632846 C
e calJac3.chr3             190725527 44 - 190850796 T
e chlSab2.chr7             135614430 7 + 135778131 I
e macFas5.chr5             189263396 46 + 189454096 T
e rheMac3.chr5             183869815 7 + 184069350 I
e nomLeu3.chr7b            113961841 0 + 115148730 C

a score=18366.000000
s hg38.chr4_KI270925v1_alt    497426 39 +    555799 CACTACGTCAGAGGCTGCTCAGAGGAGACACCCAGCAGA
s panTro4.chr4             193216611 39 + 193495092 CACTATGTCAGAGGCTGCTAAGAGGAGACACCCAGCAGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198286900 39 + 198332218 CACTATGTCAGAGGCTGCTCAGACGAGACACCCAGCAGA
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178681133 39 + 178775436 CACTACGGCAGAGGCTGCTTGGAGAAGAGACCCAGCAGA
i papAnu2.chr5             T 39 T 46
e mm10.chr8                 87883756 784 - 129401213 I
e canFam3.chr16             18168206  0 -  59632846 C
e calJac3.chr3             190725527 44 - 190850796 T
e chlSab2.chr7             135614430  7 + 135778131 I
e macFas5.chr5             189263396 46 + 189454096 T
e rheMac3.chr5             183869815  7 + 184069350 I
e nomLeu3.chr7b            113961841  0 + 115148730 C

a score=7572.000000
s hg38.chr4_KI270925v1_alt    497465 32 +    555799 CACTACGTCAGAGCCTGTTCAGAGGAGACACC
s panTro4.chr4             193216650 32 + 193495092 CGCTATGTCAGAGGCTGCTCAGAGGAGACACC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198286939 32 + 198332218 CACTATGTCAGAGGCTGCTCAGACGAGACACC
i ponAbe2.chr4             C 0 C 0
e mm10.chr8                 87883756 784 - 129401213 I
e canFam3.chr16             18168206  0 -  59632846 C
e calJac3.chr3             190725527 44 - 190850796 T
e chlSab2.chr7             135614430  7 + 135778131 I
e papAnu2.chr5             178681172 46 + 178775436 T
e macFas5.chr5             189263396 46 + 189454096 T
e rheMac3.chr5             183869815  7 + 184069350 I
e nomLeu3.chr7b            113961841  0 + 115148730 C

a score=8640.000000
s hg38.chr4_KI270925v1_alt    497497 9 +    555799 CAGCAGACA
s panTro4.chr4             193216682 9 + 193495092 CAGCAGACA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198286971 9 + 198332218 CAGCAGACA
i ponAbe2.chr4             C 0 I 850
s papAnu2.chr5             178681126 9 + 178775436 CAGCAGACA
i papAnu2.chr5             T 46 C 0
s calJac3.chr3             190725483 9 - 190850796 CAGCAGACA
i calJac3.chr3             T 44 C 0
e mm10.chr8                 87883756 784 - 129401213 I
e canFam3.chr16             18168206 0 -  59632846 C
e chlSab2.chr7             135614430 7 + 135778131 I
e macFas5.chr5             189263396 46 + 189454096 T
e rheMac3.chr5             183869815 7 + 184069350 I
e nomLeu3.chr7b            113961841 0 + 115148730 C

a score=26187.000000
s hg38.chr4_KI270925v1_alt    497506 35 +    555799 CTATGTCAGAGGCTGCTCAGAGAAGACACCCAGCA
s panTro4.chr4             193216691 35 + 193495092 CTATGTCAGAGGCTGCTCAGTGAAGAGACTCAGCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198287830 35 + 198332218 CTATGTCAGAGGCTGCTCAGAGAAGACACCCAGAA
i ponAbe2.chr4             I 850 C 0
s papAnu2.chr5             178681135 35 + 178775436 CTACGGCAGAGGCTGCTTGGAGAAGAGACCCAGCA
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190725492 35 - 190850796 CTATGTCAGAGGCTGCTGCGAGAAGAGACCCAGCA
i calJac3.chr3             C 0 T 39
e mm10.chr8                 87883756 784 - 129401213 I
e canFam3.chr16             18168206  0 -  59632846 C
e chlSab2.chr7             135614430  7 + 135778131 I
e macFas5.chr5             189263396 46 + 189454096 T
e rheMac3.chr5             183869815  7 + 184069350 I
e nomLeu3.chr7b            113961841  0 + 115148730 C

a score=1910.000000
s hg38.chr4_KI270925v1_alt    497541 2 +    555799 GA
s panTro4.chr4             193216726 2 + 193495092 GA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198287865 2 + 198332218 GA
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178681170 2 + 178775436 GA
i papAnu2.chr5             C 0 T 46
s calJac3.chr3             190725488 2 - 190850796 GA
i calJac3.chr3             T 39 C 0
e mm10.chr8                 87883756 784 - 129401213 I
e canFam3.chr16             18168206 0 -  59632846 C
e chlSab2.chr7             135614430 7 + 135778131 I
e macFas5.chr5             189263396 46 + 189454096 T
e rheMac3.chr5             183869815 7 + 184069350 I
e nomLeu3.chr7b            113961841 0 + 115148730 C

a score=14957.000000
s hg38.chr4_KI270925v1_alt    497543 32 +    555799 CACTATGTCAGAGGCTGCTCAGAGGAGACACC
s panTro4.chr4             193216728 32 + 193495092 CACTATGTCAGAGGCTGCTCAGAGAAGGGACC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198287867 32 + 198332218 CACTATGTCAGAGGCTGCTCAGAGTAGACACC
i ponAbe2.chr4             C 0 C 0
s calJac3.chr3             190725490 32 - 190850796 CACTATGTCAGAGGCTGCTGCGAGAAGAGACC
i calJac3.chr3             C 0 T 39
e mm10.chr8                 87883756 784 - 129401213 I
e canFam3.chr16             18168206  0 -  59632846 C
e chlSab2.chr7             135614430  7 + 135778131 I
e papAnu2.chr5             178681172 46 + 178775436 T
e macFas5.chr5             189263396 46 + 189454096 T
e rheMac3.chr5             183869815  7 + 184069350 I
e nomLeu3.chr7b            113961841  0 + 115148730 C

a score=48123.000000
s hg38.chr4_KI270925v1_alt    497575 39 +    555799 CAGCAGACACTATGTCAGAGGCTGCTCAGAGAAGGGACC
s panTro4.chr4             193216760 39 + 193495092 CAGCAGACACTATGTCAGAGGCTGCTCAGAGAAGGGACC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198287899 39 + 198332218 CAGCAGACACTATGTCAGAGGCTGCTCAGAGAAGGGACC
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189263350 39 + 189454096 CAGCAGGCACTACGGCAGAGGCTGCTTGGAGAAGAGACC
i macFas5.chr5             T 46 T 39
s papAnu2.chr5             178681126 39 + 178775436 CAGCAGACACTACGGCAGAGGCTGCTTGGAGAAGAGACC
i papAnu2.chr5             T 46 T 39
s calJac3.chr3             190725483 39 - 190850796 CAGCAGACACTATGTCAGAGGCTGCTGCGAGAAGAGACC
i calJac3.chr3             T 39 T 39
e mm10.chr8                 87883756 784 - 129401213 I
e canFam3.chr16             18168206  0 -  59632846 C
e chlSab2.chr7             135614430  7 + 135778131 I
e rheMac3.chr5             183869815  7 + 184069350 I
e nomLeu3.chr7b            113961841  0 + 115148730 C

a score=54332.000000
s hg38.chr4_KI270925v1_alt    497614 44 +    555799 CAGCAGACACTATGTCAGAGGCTGCTCAGAGAAGGGACCCAGCA
s panTro4.chr4             193216799 44 + 193495092 CAGCAGACACTATGTCAGAGGCTGCTCAGAGAAGACACCCAGCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198287938 44 + 198332218 CAGCAGACACTATGTCAGAGGCTGCTCAGAGAAGGGACCCAGCA
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189263350 44 + 189454096 CAGCAGGCACTACGGCAGAGGCTGCTTGGAGAAGAGACCCAGCA
i macFas5.chr5             T 39 C 0
s papAnu2.chr5             178681126 44 + 178775436 CAGCAGACACTACGGCAGAGGCTGCTTGGAGAAGAGACCCAGCA
i papAnu2.chr5             T 39 C 0
s calJac3.chr3             190725483 44 - 190850796 CAGCAGACACTATGTCAGAGGCTGCTGCGAGAAGAGACCCAGCA
i calJac3.chr3             T 39 T 39
e mm10.chr8                 87883756 784 - 129401213 I
e canFam3.chr16             18168206  0 -  59632846 C
e chlSab2.chr7             135614430  7 + 135778131 I
e rheMac3.chr5             183869815  7 + 184069350 I
e nomLeu3.chr7b            113961841  0 + 115148730 C

a score=2865.000000
s hg38.chr4_KI270925v1_alt    497658 2 +    555799 GA
s panTro4.chr4             193216843 2 + 193495092 GA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198287982 2 + 198332218 GA
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189263394 2 + 189454096 GA
i macFas5.chr5             C 0 T 46
s papAnu2.chr5             178681170 2 + 178775436 GA
i papAnu2.chr5             C 0 T 39
s calJac3.chr3             190725488 2 - 190850796 GA
i calJac3.chr3             T 39 C 0
e mm10.chr8                 87883756 784 - 129401213 I
e canFam3.chr16             18168206 0 -  59632846 C
e chlSab2.chr7             135614430 7 + 135778131 I
e rheMac3.chr5             183869815 7 + 184069350 I
e nomLeu3.chr7b            113961841 0 + 115148730 C

a score=28501.000000
s hg38.chr4_KI270925v1_alt    497660 37 +    555799 CACTATGTCAGAGGCTGCTCAGAGAAGACACCCAGCA
s panTro4.chr4             193216845 37 + 193495092 CACTCTGTCAGAGGCTGCTCAGAGAAGACACCCAGCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198287984 37 + 198332218 CACTATGTCAGAGGCTGCTCAGAAAAGGGACCCAGCA
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178681133 37 + 178775436 CACTACGGCAGAGGCTGCTTGGAGAAGAGACCCAGCA
i papAnu2.chr5             T 39 C 0
s calJac3.chr3             190725490 37 - 190850796 CACTATGTCAGAGGCTGCTGCGAGAAGAGACCCAGCA
i calJac3.chr3             C 0 T 44
e mm10.chr8                 87883756 784 - 129401213 I
e canFam3.chr16             18168206  0 -  59632846 C
e chlSab2.chr7             135614430  7 + 135778131 I
e macFas5.chr5             189263396 46 + 189454096 T
e rheMac3.chr5             183869815  7 + 184069350 I
e nomLeu3.chr7b            113961841  0 + 115148730 C

a score=1146.000000
s hg38.chr4_KI270925v1_alt    497697 2 +    555799 GA
s panTro4.chr4             193216882 2 + 193495092 GA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198288021 2 + 198332218 GA
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178681170 2 + 178775436 GA
i papAnu2.chr5             C 0 T 46
e mm10.chr8                 87883756 784 - 129401213 I
e canFam3.chr16             18168206 0 -  59632846 C
e calJac3.chr3             190725527 44 - 190850796 T
e chlSab2.chr7             135614430 7 + 135778131 I
e macFas5.chr5             189263396 46 + 189454096 T
e rheMac3.chr5             183869815 7 + 184069350 I
e nomLeu3.chr7b            113961841 0 + 115148730 C

a score=573.000000
s hg38.chr4_KI270925v1_alt    497699 2 +    555799 CA
s panTro4.chr4             193216884 2 + 193495092 CA
i panTro4.chr4             C 0 I 780
s ponAbe2.chr4             198288023 2 + 198332218 CA
i ponAbe2.chr4             C 0 C 0
e mm10.chr8                 87883756 784 - 129401213 I
e canFam3.chr16             18168206 0 -  59632846 C
e calJac3.chr3             190725527 44 - 190850796 T
e chlSab2.chr7             135614430 7 + 135778131 I
e papAnu2.chr5             178681172 46 + 178775436 T
e macFas5.chr5             189263396 46 + 189454096 T
e rheMac3.chr5             183869815 7 + 184069350 I
e nomLeu3.chr7b            113961841 0 + 115148730 C

a score=6898.000000
s hg38.chr4_KI270925v1_alt    497701 30 +    555799 CTACGTCAGAGGCTGTTCAGAGGAGACACC
s panTro4.chr4             193217666 30 + 193495092 CTATGTCAGAGGCTGCTCAGAGAAGACACC
i panTro4.chr4             I 780 C 0
s ponAbe2.chr4             198288025 30 + 198332218 CTATGTCAGAGGTTGCTTAGAGAAGAGACC
i ponAbe2.chr4             C 0 C 0
e mm10.chr8                 87883756 784 - 129401213 I
e canFam3.chr16             18168206  0 -  59632846 C
e calJac3.chr3             190725527 44 - 190850796 T
e chlSab2.chr7             135614430  7 + 135778131 I
e papAnu2.chr5             178681172 46 + 178775436 T
e macFas5.chr5             189263396 46 + 189454096 T
e rheMac3.chr5             183869815  7 + 184069350 I
e nomLeu3.chr7b            113961841  0 + 115148730 C

a score=8706.000000
s hg38.chr4_KI270925v1_alt    497731 17 +    555799 CAGCAGACCCTATGTCA
s panTro4.chr4             193217696 17 + 193495092 CAGCAGACACTATGTCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198288055 17 + 198332218 CAGCAGACACTATATCA
i ponAbe2.chr4             C 0 C 0
s calJac3.chr3             190725483 17 - 190850796 CAGCAGACACTATGTCA
i calJac3.chr3             T 44 C 0
e mm10.chr8                 87883756 784 - 129401213 I
e canFam3.chr16             18168206  0 -  59632846 C
e chlSab2.chr7             135614430  7 + 135778131 I
e papAnu2.chr5             178681172 46 + 178775436 T
e macFas5.chr5             189263396 46 + 189454096 T
e rheMac3.chr5             183869815  7 + 184069350 I
e nomLeu3.chr7b            113961841  0 + 115148730 C

a score=19046.000000
s hg38.chr4_KI270925v1_alt    497748 23 +    555799 GAGGCTGCTCAGAGAAGAGACCT
s panTro4.chr4             193217713 23 + 193495092 GAGGCTGCTCAGAGAAGAGACCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198288072 23 + 198332218 GAGGCTGCTCAGAGAAGACACCC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113961841 23 + 115148730 GAGGCTGCTCAGAGAAGAGACCC
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190725500 23 - 190850796 GAGGCTGCTGCGAGAAGAGACCC
i calJac3.chr3             C 0 T 39
e mm10.chr8                 87883756 784 - 129401213 I
e canFam3.chr16             18168206  0 -  59632846 C
e chlSab2.chr7             135614430  7 + 135778131 I
e papAnu2.chr5             178681172 46 + 178775436 T
e macFas5.chr5             189263396 46 + 189454096 T
e rheMac3.chr5             183869815  7 + 184069350 I

a score=32795.000000
s hg38.chr4_KI270925v1_alt    497771 41 +    555799 AGCAGACACTATGTCAGAGGCTGCTCAGAGAAGAGACCCAG
s panTro4.chr4             193217736 41 + 193495092 AGCAGACACTATGTCAGAGGCTGCTCAGAGAAGACACCCAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198288095 41 + 198332218 AGCAGACGCTATGTCAGAGGCTGCTTAGAGAAGAGACACAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113961864 41 + 115148730 AGCAGACGCTACGTCAGAGGCTGCTCAGGGGAGACACCCAG
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190725484 41 - 190850796 AGCAGACACTATGTCAGAGGCTGCTGCGAGAAGAGACCCAG
i calJac3.chr3             T 39 T 39
e mm10.chr8                 87883756 784 - 129401213 I
e canFam3.chr16             18168206  0 -  59632846 C
e chlSab2.chr7             135614430  7 + 135778131 I
e papAnu2.chr5             178681172 46 + 178775436 T
e macFas5.chr5             189263396 46 + 189454096 T
e rheMac3.chr5             183869815  7 + 184069350 I

a score=28704.000000
s hg38.chr4_KI270925v1_alt    497812 41 +    555799 AAGACACTATGTCAGAGGCTGCTCAGAGAAGGGACCCAGCA
s panTro4.chr4             193217777 41 + 193495092 CAGACACTATGTCAGAGGCTGTTCAGAGAAGGGACCCAGCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198288136 41 + 198332218 CAGACACTATGTCAGAGTCTCCTCAGAGAAGACACCCAGAA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113961905 41 + 115148730 CAGACGCTATGTCAGACTCTGCTCAGGGGAGACACCCAGCA
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190725486 41 - 190850796 CAGACACTATGTCAGAGGCTGCTGCGAGAAGAGACCCAGCA
i calJac3.chr3             T 39 T 39
e mm10.chr8                 87883756 784 - 129401213 I
e canFam3.chr16             18168206  0 -  59632846 C
e chlSab2.chr7             135614430  7 + 135778131 I
e papAnu2.chr5             178681172 46 + 178775436 T
e macFas5.chr5             189263396 46 + 189454096 T
e rheMac3.chr5             183869815  7 + 184069350 I

a score=28771.000000
s hg38.chr4_KI270925v1_alt    497853 37 +    555799 GACGCTATGTCAGAAGCTGCTCAGAGAAGAGACCCAG
s panTro4.chr4             193217818 37 + 193495092 GACACTATGTCAGAGGGTGCTCAGAGAAGACACCCAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198288177 37 + 198332218 GACGCTATGTCAGAGGCTGCTCAGAGAAGACACCCAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113961946 37 + 115148730 GACGCTATGTCAGAGGCTGCTCAGGGGAGACACTCAG
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190725488 37 - 190850796 GACACTATGTCAGAGGCTGCTGCGAGAAGAGACCCAG
i calJac3.chr3             T 39 T 42
e mm10.chr8                 87883756 784 - 129401213 I
e canFam3.chr16             18168206  0 -  59632846 C
e chlSab2.chr7             135614430  7 + 135778131 I
e papAnu2.chr5             178681172 46 + 178775436 T
e macFas5.chr5             189263396 46 + 189454096 T
e rheMac3.chr5             183869815  7 + 184069350 I

a score=68230.000000
s hg38.chr4_KI270925v1_alt    497890 144 +    555799 AAGACACTATGTCAGAGGTTGCTTAGAGAAGGGACCCAGCAGACGCTATGTCAGAGGCTGTTCAGAGGAGACACCCAGCAGACACCATGTCAGAGGCTGTTTAGAGAAGACACCCAGCAGACACTATGTCAGAGGCTGTTCAGA
s panTro4.chr4             193217855 144 + 193495092 CAGACACTATGTCAGAGGCTGCTCAGAGAAGGGACCCAGCAGACACTATGTCAGAGGCTTCTCAGAGAAGGGACCCAGCAGACACTATGTCAGAGGCTGCTCAGAGAAGACACCTAGCAGATACTATGTCATAGGCTGCTCAGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198288214 144 + 198332218 AAGACACTATGTCAGAGGCTGCTCAGAGAAGGGACCCAGCAGACACTATGTCAGAGGCTGCTCAGAGAAGGGACCCAGCAGACACTATGTCAGAGGCTGCTCAGAGTAGACACTCAGCAGACACTATGTCAGAGGCTGCTCAGA
i ponAbe2.chr4             C 0 I 450
s nomLeu3.chr7b            113961983 144 + 115148730 CAGACGCTATGTCAGAGGCTGCTCAGGGGAGACACTCAGCAGACGCTATGTCAGACTCTGCTCAGGGGAGACACCCAGCAGACGCTATGTCAGAGGCTGCTCAGGGGAGACACCCAGCAGACGCTATGTCAGAGGCTGCTCAGA
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87883756 784 - 129401213 I
e canFam3.chr16             18168206   0 -  59632846 C
e calJac3.chr3             190725525  42 - 190850796 T
e chlSab2.chr7             135614430   7 + 135778131 I
e papAnu2.chr5             178681172  46 + 178775436 T
e macFas5.chr5             189263396  46 + 189454096 T
e rheMac3.chr5             183869815   7 + 184069350 I

a score=4143.000000
s hg38.chr4_KI270925v1_alt    498034 9 +    555799 GGAGACACC
s panTro4.chr4             193217999 9 + 193495092 GAAGACACC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198288808 9 + 198332218 GAAGACACC
i ponAbe2.chr4             I 450 C 0
s nomLeu3.chr7b            113962127 9 + 115148730 GAAGAGACC
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87883756 784 - 129401213 I
e canFam3.chr16             18168206 0 -  59632846 C
e calJac3.chr3             190725525 42 - 190850796 T
e chlSab2.chr7             135614430 7 + 135778131 I
e papAnu2.chr5             178681172 46 + 178775436 T
e macFas5.chr5             189263396 46 + 189454096 T
e rheMac3.chr5             183869815 7 + 184069350 I

a score=27554.000000
s hg38.chr4_KI270925v1_alt    498043 39 +    555799 CAGCAGACACCATGTCAGAGGCTGTTTAGAGAAGACACC
s panTro4.chr4             193218008 39 + 193495092 CAGCAGACACTATGTCAGAGGCTGCTCAGAGAAGGGACC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198288817 39 + 198332218 CAACAGACACTATGTCAGAGGCTGCTCAGAGTAGACACC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113962136 39 + 115148730 CAGCAGACGCTATGTCAGAGGCTGCTCAGGGGAGACACC
i nomLeu3.chr7b            C 0 C 0
s mm10.chr8                 87884540 39 - 129401213 CAGCAGGGACCACGTCAAAGATTGCTTAGAGAAGGCACC
i mm10.chr8                I 784 C 0
e canFam3.chr16             18168206  0 -  59632846 C
e calJac3.chr3             190725525 42 - 190850796 T
e chlSab2.chr7             135614430  7 + 135778131 I
e papAnu2.chr5             178681172 46 + 178775436 T
e macFas5.chr5             189263396 46 + 189454096 T
e rheMac3.chr5             183869815  7 + 184069350 I

a score=20440.000000
s hg38.chr4_KI270925v1_alt    498082 10 +    555799 CAGCAGACAC
s panTro4.chr4             193218047 10 + 193495092 CAGCGGACAC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198288856 10 + 198332218 CAGCAGACAC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113962175 10 + 115148730 CAGCAGACGC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189263350 10 + 189454096 CAGCAGGCAC
i macFas5.chr5             T 46 C 0
s papAnu2.chr5             178681126 10 + 178775436 CAGCAGACAC
i papAnu2.chr5             T 46 C 0
s calJac3.chr3             190725483 10 - 190850796 CAGCAGACAC
i calJac3.chr3             T 42 C 0
s mm10.chr8                 87884579 10 - 129401213 AAGCAAAGAC
i mm10.chr8                C 0 I 8
e canFam3.chr16             18168206  0 -  59632846 C
e chlSab2.chr7             135614430  7 + 135778131 I
e rheMac3.chr5             183869815  7 + 184069350 I

a score=52649.000000
s hg38.chr4_KI270925v1_alt    498092 34 +    555799 TATGTCAGAGGCTGCTTAGGCAAGAGACCCAGCA
s panTro4.chr4             193218057 34 + 193495092 TATGTCAGAGGCTGCTCAGAGAAGAGACTTAGTA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198288866 34 + 198332218 TATGTCAGAGGCTGCTCAGAGAAGGGACCCAGCA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113962185 34 + 115148730 TATGTCAGAGGCTGCTCAGGGGAGACACCCAGCA
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189263360 34 + 189454096 TACGGCAGAGGCTGCTTGGAGAAGAGACCCAGCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178681136 34 + 178775436 TACGGCAGAGGCTGCTTGGAGAAGAGACCCAGCA
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190725493 34 - 190850796 TATGTCAGAGGCTGCTGCGAGAAGAGACCCAGCA
i calJac3.chr3             C 0 T 5
e mm10.chr8                 87884589  8 - 129401213 I
e canFam3.chr16             18168206  0 -  59632846 C
e chlSab2.chr7             135614430  7 + 135778131 I
e rheMac3.chr5             183869815  7 + 184069350 I

a score=2865.000000
s hg38.chr4_KI270925v1_alt    498126 2 +    555799 GA
s panTro4.chr4             193218091 2 + 193495092 GA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198288900 2 + 198332218 GA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113962219 2 + 115148730 GA
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189263394 2 + 189454096 GA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178681170 2 + 178775436 GA
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87884589 8 - 129401213 I
e canFam3.chr16             18168206 0 -  59632846 C
e calJac3.chr3             190725527 5 - 190850796 T
e chlSab2.chr7             135614430 7 + 135778131 I
e rheMac3.chr5             183869815 7 + 184069350 I

a score=6749.000000
s hg38.chr4_KI270925v1_alt    498128 15 +    555799 CACTATTTCAGAGGA
s panTro4.chr4             193218093 15 + 193495092 CACTATGTCAGAGGC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198288902 15 + 198332218 CACTATGTCAGAGGA
i ponAbe2.chr4             C 0 I 296
s nomLeu3.chr7b            113962221 15 + 115148730 CGCTATGTCAGAGGC
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87884589  8 - 129401213 I
e canFam3.chr16             18168206  0 -  59632846 C
e calJac3.chr3             190725527  5 - 190850796 T
e chlSab2.chr7             135614430  7 + 135778131 I
e papAnu2.chr5             178681172  0 + 178775436 C
e macFas5.chr5             189263396  0 + 189454096 C
e rheMac3.chr5             183869815  7 + 184069350 I

a score=1696.000000
s hg38.chr4_KI270925v1_alt    498143 10 +    555799 TGTGTAGGGA
s panTro4.chr4             193218108 10 + 193495092 TGTTTAGGGA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113962236 10 + 115148730 TGCTCAGGGG
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87884589  8 - 129401213 I
e canFam3.chr16             18168206  0 -  59632846 C
e calJac3.chr3             190725527  5 - 190850796 T
e chlSab2.chr7             135614430  7 + 135778131 I
e papAnu2.chr5             178681172  0 + 178775436 C
e macFas5.chr5             189263396  0 + 189454096 C
e rheMac3.chr5             183869815  7 + 184069350 I
e ponAbe2.chr4             198288917 296 + 198332218 I

a score=2463.000000
s hg38.chr4_KI270925v1_alt    498153 7 +    555799 AGACACG
s panTro4.chr4             193218118 7 + 193495092 AGACACG
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113962246 7 + 115148730 AGACACC
i nomLeu3.chr7b            C 0 C 0
s canFam3.chr16             18168206 7 -  59632846 AGAGACC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87884589 8 - 129401213 I
e calJac3.chr3             190725527 5 - 190850796 T
e chlSab2.chr7             135614430 7 + 135778131 I
e papAnu2.chr5             178681172 0 + 178775436 C
e macFas5.chr5             189263396 0 + 189454096 C
e rheMac3.chr5             183869815 7 + 184069350 I
e ponAbe2.chr4             198288917 296 + 198332218 I

a score=2530.000000
s hg38.chr4_KI270925v1_alt    498160 4 +    555799 CAGC
s panTro4.chr4             193218125 4 + 193495092 CAGC
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113962253 4 + 115148730 CAGC
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190725522 4 - 190850796 CAGC
i calJac3.chr3             T 5 C 0
s canFam3.chr16             18168213 4 -  59632846 CAAA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87884589 8 - 129401213 I
e chlSab2.chr7             135614430 7 + 135778131 I
e papAnu2.chr5             178681172 0 + 178775436 C
e macFas5.chr5             189263396 0 + 189454096 C
e rheMac3.chr5             183869815 7 + 184069350 I
e ponAbe2.chr4             198288917 296 + 198332218 I

a score=205.000000
s hg38.chr4_KI270925v1_alt    498164 2 +    555799 CA
s panTro4.chr4             193218129 2 + 193495092 AG
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113962257 2 + 115148730 AG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183869822 2 + 184069350 CA
i rheMac3.chr5             I 7 C 0
s chlSab2.chr7             135614437 2 + 135778131 CA
i chlSab2.chr7             I 7 C 0
s calJac3.chr3             190725526 2 - 190850796 AA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18168217 2 -  59632846 CA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87884589 8 - 129401213 I
e papAnu2.chr5             178681172 0 + 178775436 C
e macFas5.chr5             189263396 0 + 189454096 C
e ponAbe2.chr4             198288917 296 + 198332218 I

a score=5348.000000
s hg38.chr4_KI270925v1_alt    498166 2 +    555799 GA
s panTro4.chr4             193218131 2 + 193495092 GA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198289213 2 + 198332218 GA
i ponAbe2.chr4             I 296 C 0
s nomLeu3.chr7b            113962259 2 + 115148730 GA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183869824 2 + 184069350 GA
i rheMac3.chr5             C 0 C 0
s chlSab2.chr7             135614439 2 + 135778131 GA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190725528 2 - 190850796 GA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18168219 2 -  59632846 GA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87884589 8 - 129401213 I
e papAnu2.chr5             178681172 0 + 178775436 C
e macFas5.chr5             189263396 0 + 189454096 C

a score=5931.000000
s hg38.chr4_KI270925v1_alt    498168 7 +    555799 -AGGGTTT
s panTro4.chr4             193218133 7 + 193495092 -AAGGTTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198289215 7 + 198332218 -AGGGTTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113962261 7 + 115148730 -AAATTCT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183869826 7 + 184069350 -AGCGGTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189263396 7 + 189454096 -AGCGGTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178681172 7 + 178775436 -AGCGGTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135614441 7 + 135778131 -AGGGGTT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190725530 7 - 190850796 -AGGCTTT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18168221 7 -  59632846 TAGCCTT-
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87884589 8 - 129401213 I

a score=1183919.000000
s hg38.chr4_KI270925v1_alt    498175 358 +    555799 -----GGTTA-----TTGACAAGATAAAATGACCAACCTGT--GTTTT-TAGGATGCATTGTATGAAATCACCTTCCTTAGAAAT----ATTTGAT-AAAATATGCCATCTTttatgctgagcaaaaga-tatcagacacaaat--gaatacatattgtgtgattccacttatatgaagtttgaaaaccag--caaaaccaatctataggg-acacagagc-aattggtggttttctggggct-gaaaaattactggtg----aagactgac--tgacaaggggcaagagggaac-ttc-tagagttacagaaatgttctacaccttgggtacaccaacacatacatttgtcaaaacacactgtacttgatctttaaaatgtaggccttttg
s panTro4.chr4             193218140 358 + 193495092 -----GGTTA-----TTGACAAGATAAAATGACCAACCTGT--GTTTT-TAGGATGCATTGTATGAAATCACCTTCCTTAGAAAT----ATTTGAT-AAAATATGCCATCTTttatgctgagcaaaata-tatcagacacaaat--gaatacatattgtgtgattccacttatatgaagtttgaaaaccag--caaaaccaatctataggg-acacaaagc-aattggtggttttctggggct-gaaaaattactggtg----atgactgac--tgacaaggggcaagagggaac-ttc-tagagttacagaaatgttctacaccttgggtacaccaacacatacatttgtcaaaacacactgtacttgatcttcaaaatgtaggccttttg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198289222 367 + 198332218 -----GGTTA-----TTGAAAAGATAAAATGGCCAAGCTGT--ATTTT-TAGGATGCATTGTATGAAATCACCTTCCTTAGAAGT----GTTTGATAAAAATATGCCATCTTttatgctgagcaaaagattatcagacacaaattgaaatacatattgtgtcattctacttatatgaagtttgaaaacccagccaaaaccaatctatagggaacacaaagcaaactgttgattttctgggact-gaaaaattactgagg----aagactgac-ttgacaaggggcaagagggaac-ttc-tagagttacacaaatgttctacaccttgggtacaccagcacatacatttgtgaaaacacactaaacttgatctttaaaatgtaggcctttta
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113962268 358 + 115148730 -----GGTTA-----TTGACAAGATAAAATGGCCAACCTAT--ATTTT-TAGGATGCATTGAATGAAATCACCTTCCTTAGAAAT----GTTTGAT-AAAATATGCCATCTTttatgctgagcaaaaga-agtcagacacaaat--gaatacatattgtgtgattctacttacatgaaatttgaaaactag--caaaaccaatctatagtg-acacaaagc-aactggtgattttctggggct-gaaaaattactgggg----aagactgac--tgacaaggggcaagagggaac-ttc-tagagttacaccaatgttctacaccttgggtacaccaacacatacatttgtcaaaacacactgaacttgatctttaaaatgtaggcctttta
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183869833 357 + 184069350 -----GGTTA-----TTGACAAGATACAATGGCCAACCTGT--ATTTT-CAGGATGCACTGAATGAAATCACCTTCCTTAGAAAT----GTTTGAT-AAAATATGCCATCTTttatgctgag-aaaaga-attcagacacaaat--gaatacatattgtatgattccatttatatgaagcttgaaaaccag--caaaaccaatctatagcg-acacaaagc-aattggtgatttcctggggct-gaaaaattactgggg----aagactgac--tgacaaggggcaagagggaac-ttc-cagagtcacacaaatgttccacatcctgggcacaccagcacacacatttgtcaaaccacactgaacttgatctttaaaatgtaggcctttta
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189263403 357 + 189454096 -----GGTTA-----TTGACAAGATACAATGGCCAACCTGT--ATTTT-CAGGATGCACTGAATGAAATCACCTTCCTTAGAAAT----GTTTGAT-AAAATATGCCATCTTttatgctgag-aaaaga-attcagacacaaat--gaatacatattgtatgattccatttatatgaagcttgaaaaccag--caaaaccaatctatagcg-acacaaagc-aattggtgatttcctggggct-gaaaaattactgggg----aagactgac--tgacaaggggcaagagggaac-ttc-cagagtcacacaaatgttccacatcctgggcacaccagcacacacatttgtcaaaccacactgaacttgatctttaaaatgtaggccgttta
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178681179 357 + 178775436 -----GGTTA-----TTGACAAGATACAATGGCCAACCTGT--ATTTT-CAGGATGCATTGAATGAAATCACCTTCCTTAGAAAT----GCTTGAT-AAAATAAGCCATCTTTTATGCTGAG-AAAAGA-ATTCAGacacaaat--gaatacatattgtatgattccatttatatgaagctTGAAAACCAG--CAAAACCAATCTATAGCG-ACACAAAGC-AATTGGTGATTTCCTGGGGCC-GAAAAATTACTGGGG----AAGACTGAC--TGACAAGGGGCAAGAGGGAAC-TTC-CAGAGTCACACAAATGTTCCACATCCTGGGCACACCAGCACACACATTTGTCAAACCACACTGAACTTGATCTTTAAAATGTAGgcctttta
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135614448 357 + 135778131 -----GGTTA-----TTGACAAGATACAATGGCCAACCTGT--ATTTT-CAGGATGCATTGAATGAAATCACCTTCCTTAGAAAT----GTTTGAT-AAAATATGCCATCTTttatgctgag-aaaaga-attcagacacaaat--gaatacatattgtacgattccatttatatgaagcatgaaaaccag--taaaaccaatctacagtg-acacaaagc-aactggtgatttcctggggct-gaaaaattactgggg----aagactgac--tgacaaggggcaagagggaac-ttc-cagagtcacacaaatgttccacatcctgggcacaccagcgcacacatttgtcaaaccacactgaacttgatctttaaaatgtaggcctttta
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190725537 359 - 190850796 -----GGTTAAGCTGTTGACAAGACGAAATGGCAAACTTGT--ATTTT-TAGGATGCGTTGAATGAAATCACCCTCCCGAGAAAT----ATTTGAT-AAAATATGCCATCTTttatgctgagcaaaaga-agtcagacacaaat--gaatgtgtgtcatatgattccatttatatgaagtttgaaaac-ag--caaaacttatgtatagtg-acagaaagc-aactggtgatttcctggggctaaaaaaattgctgagg----aagactgac--agacaagcgtcaaga---aac-ttc-tagagttgcacaaatgttctacatgttgggtacaccaacacataca-ttgtcaaaacacgctgaacttgatctttaaaatgaaggcatttta
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87884597 329 - 129401213 -----AAGTC-----TTTGCAAACTGAAACAGTCAA-TTGTCAATTAA-TAGGATGCACTGAATGAAGTAGCCCTACATACACACCACAAATTGAT-AAAATATGCTGTTCT---------------GC-----------------Tagcacatgttgcaagatcccattcatataaatttcaaatataag--caaaattaatctgtagtg-acataaaccaaatcagtggtttcctgag-ct-g-ggaatgactgaggagacaaggaaagc--tgacaaggaatatgagtgagc-tttgtggagtgacaagcatgttacatatcttggttaaaataatgcaaacatttgttaaa---------actgccacctttaaatgtacgcatttta
i mm10.chr8                I 8 C 0
s canFam3.chr16             18168228 354 -  59632846 GCTCAAGATA-----ATTTCAAGATAAAGCGGTCAA-CTGT--ATTTTGTATAATACATTAAGTGAAAGCATCCTCCCTAGAAAT----AATTGAT-GAAATATGTCACTTTttatgctgagccaaaaa-acccagacacaagt--gagtacatagagcatgattccattcatatgaaatttgggaacaag--aaaagctaatgtatagtg-atg-gaagt-gactg--------tgggggct-ggatgatgactggga----aggggagacattgacaagaggcaagagggaactttc-tggggtgacataaatgttttatgtcttggttatgt---tgcatgcatttatcaaaacacaccaaactctacccctaaaatttatgcctttta
i canFam3.chr16            C 0 I 207

a score=166481.000000
s hg38.chr4_KI270925v1_alt    498533 63 +    555799 ttgtatataaattatatacctcTTAAGTTGAT-----TTTAAAAAAAACTGTCTTTACTTAAATTTA-G
s panTro4.chr4             193218498 63 + 193495092 ttgtatataaattatatacctcTTAAGTTGAT-----TTCAAAAGAAGCTGTCTTTACTTAAATTTA-G
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198289589 64 + 198332218 ttgtatataaattatatacctcTTAAGTTGAT-----TTAAAAAGAAGCTGTCTTTACTTAAATTTAGG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113962626 58 + 115148730 ttgtatgtaaattgtatacctcTTAAGTTGAT-----TTAAAAAGAGGCGGT-----CTTAAATTTA-G
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183870190 57 + 184069350 ttgtatataaattataTACCCCTTAAGTTGA------TTAAAAAGAAGCTGTCTTAAC-----TTTA-G
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189263760 57 + 189454096 ttgtatataaattataTACTCCTTAAGTTGA------TTAAAAAGAAGCTGTCTTAAC-----TTTA-G
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178681536 57 + 178775436 ttgtatataaattatatacccCTTAAGTTGA------TTAAAAAGAAGCTGTCTTTAC-----TTTA-G
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135614805 62 + 135778131 ttgtatataaattataTACCCCTTAAGTTGA------TTAAAAAGAAGCTGTCTTTACTTAAATTTA-G
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190725896 57 - 190850796 ttgtatataaattataTACCCCTTCAGCTGA------TTAAAAAGAAGCTGTCTTAAA-----TTTA-G
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87884926 63 - 129401213 ttttacataaattctatctcCAGTAAATTGATAAAAAAAAAAAAGAAACTGACTTGGG-----CTGT-G
i mm10.chr8                C 0 I 416
s canFam3.chr16             18168789 61 -  59632846 TTTTTTATAATCTATATCTTCACTAATTTGA------TC-AAAAGTAGCTGTCTTTATTTAAATATA-A
i canFam3.chr16            I 207 C 0

a score=896082.000000
s hg38.chr4_KI270925v1_alt    498596 308 +    555799 ACTTT-GAAACCCTTCAGAAAGTCCTAAAAATTCTGTACAATTAGTATTGAACACTAGGATACACATGGGCAACCAATCCTAGACAGCTCAGCACAGGACAAACAGAAAGGTCATCCTGCAACATGCAATCTAGATGACGAAGAAAGATAACTCAAATGAGACACCTCAGAGACCTCTGTTCT---CCAGTTCTGG-CTCTGATTTTCATGAA-TTACAAAGTAA-GGAAGATTCAGAGTTAATAGCATAGCCACAATGTAAAATATATTTAGTTTGTTGAATATT-AACATTTTACCA--TAACTATAATGTACATT
s panTro4.chr4             193218561 308 + 193495092 ACTTT-GAAACCCTTCAGAAAGTCCTAAAAATTCTGTACAATTAGTATTGAACACTAGGATACACATGGGCAACCAATCCTAGACAGCTCAGCACAGGACAAACAGAAAGGTCATCCTGCAACATGCAATCTAGATGACGAAGAAAGAGAACTCAAATGAGACACTTCAGAGACCTCTCTTCT---CCAGTTCTGG-CTCTGATTTTCATGAA-TTACAAAGTAA-GGAAGATTCAGAGTTAATAGCATAGCCACAATGTAAAATATATTTAGTTTGTTGAATATT-AACATTTTACCA--TAACTATAATGTACATT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198289653 313 + 198332218 ACTTTGGAAACCCTTCAGAAAGTCCTAAAAATTCTGTACAATTAGTTTTGAACACTAGGATACACATGGGCAACCAATCCTACACAGCTCAGCACAGGACAAACAGAAAGGTCATCCTGCAACATGCAATCTAGATGACGAAGAAAGAGAACTCAAATGAGACACCTCAGAGACTTCTCTTCT---CCAGTTCTGGCCTCTGATTTTCATGAATTTACAAAGTAATGGAAGATTCAGAGTTAATACCATAGCCACAATGTAAAATATATTTAGTTTGTTGAATATTAAACGTTTTACTA--TAACTATAATGTACATT
i ponAbe2.chr4             C 0 I 479
s nomLeu3.chr7b            113962684 304 + 115148730 ACTTT-GAAACCCTTCAGAAAGTCCTAAAAATTCTGTACAGTTAGTATTGAACACTAGGATACACATGGGCAACCAATCCTACACAGCTCAGCAGAGGACAAAC----AGGTCATCCCGCAACATGCAATCTAGATGATGAAGAAAGAGAACTCAAATGAGATACCTCAGAGACCTCTCTTTT---CCAGTTCTGG-CTTTGATTTTCATGAA-TTACAAAGTAA-GGAAGATTCATAGTTAATACCATAGGCATAATGTAAAATATATTTAGTTTGTTGAATATT-AATGTTTTACCA--TAATTATAATGTACATT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183870247 300 + 184069350 AATGT-GAAACCCTTCAGAAAGTTCTAAAAATTCTGCACAATTAGTACTGAACACTAGGATACACGTGGGCAACTAATCCTACACAGCTCAGTGCAGGACAAACAGAAAGGTCTTCCTGCAACATGCAATCTAGATGACGAAG-----------AAATGACATACCTCAGAGACCTCTCTTTTCCCCCCGTTTTGG-CTTTGATTTTCATGAA-TTACGAAGTAA-GGAAGATTCGGAGTGAATACCACAGCCATGATGCAAAATATATTTAGTTCGTTGAATATT-AACATTTTACCA--TAACCATAATGTACATT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189263817 300 + 189454096 AATGT-GAAACCCTTCAGAAAGTTCTAAAAATTCTGCACAATTAGTACTGAACACTAGGATACACGTGGGCAACTAATCCTACACAGCTCAGTGCAGGACAAACAGAAAGGTCTTCCTGCAACATGCAATCTAGATGACGAAG-----------AAATGACATACCTCAGAGACCTCTCTTTTCCCCCCGTTTTGG-CTTTGATTTTCATGAA-TTACGAAGTAA-GGAAGATTCGGAGTGAATACCACAGCCATGATGCAAAATATATTTAGTTCGTTGAATATT-AACATTTTACCA--TAACCATAATGTACATT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178681593 300 + 178775436 AATGT-GAAACCCTTCAGAAAGTTCTAAAAATTCTGCACAATTAGTACTGAACACTAGGATACACGTGGGCAACTAATCCTACACAGCTCAGCGCAGGACAAACAGAAAGGTCTTCCTGCAACATGCAATCTAGATGACGAAG-----------AAATGACATACCTCAGAGACCTCTCTTTTCCCCCCATTCTGG-CTTTGATTTTCATGAA-TTACGAAGTAA-GGAAGATTCGGAGTGAATACCACAGCCATGATGCAAAATATATTTAGTCCGttgaatatt-aacattttacca--tAACCATAATGTACATT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135614867 299 + 135778131 AATGT-GAAACCCTTCAGAAAGTTCTAAAAATTCTGCACAATTAGTACTGAACACTAGGATACACATGGGCAACCAATCCTACACAGCTCAGCGCAAGACAAACAGAAAGGTCATCCCGCAACATGCAATCTAGAAGACGAAG-----------AAATGACGTACCTCAGAGACCTCTCTTTT-CCCCAGTTCTGG-CTTTGATTTTCATGAA-TTACGAAGTAA-GGAAGATTCGGAGTGAATACCACAGCCATGATGCAAAATATATTTAGGTCGTTGAATATT-AACAGTTTATCA--TAACTATAATGTACATT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190725953 305 - 190850796 ATGTT-GAAACCCTTCAGAACGTCCTAAAAATTCTCTACAATTAGTACTGAACACTAGGATATACATGGGCAACCAATCCCACACAGCTCAGTGCAGGACAAACAGACAGGCCCCCCTGCAACATGCGATCTAGAAGACAAAGACAGAGAACTCAAATAAAATACCTCAGAGTCCTCTCTTTT---CCAGTTCTGG-CTTTGATTTTCACGAA-TTACAAAGTAA-GGAAGGCTCAGAGTTAATAACATAGCAATAATGCAAAATACATTTAGTTTCTTGATTACT----GTTTTACCA--TAACTATAATGTACAAT
i calJac3.chr3             C 0 I 5
s canFam3.chr16             18168850 264 -  59632846 ACCTT-GAGAGCTTTCAGAAAACCATAAAA--TCTCTACAATTGGTATCTAATGCGAGGATACACATAGGTGCACAATC-------ACTCAACATGGCACAAACAGAA--GTCATACTATAACACATAATCTAGATGACAAA--------------------------------CTGTCTTTG---CCAGTCCTGG-CTCTGGTTTTCATGAA-TTCCAAAGACT-GAGGAATTCA-ACTTAATACCATATCCATAATGCAGAGTATATTTATTTCGTTTATT--T-AGTATATTATTAGGTTGATATATTATAAATT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87884989 416 - 129401213 I

a score=661053.000000
s hg38.chr4_KI270925v1_alt    498904 232 +    555799 TAGTTTGTTGATCATTAATGTTT--GTTTCCTGTATG--AAAAAAATGTATGCATATATAATTCTCGTTCTACATCTAGGTTCATTCATTCTATCTACTAATCCTTTTATGGCCTTTTAAAAGCTGGTTAAGGAATTTATAAGATGACTGTCTAGACCAGAGGAACTCAACTGACAATGGAAGTGATGATTCTGGCAGCTAAGCTGGGTAGATCTTACT-------CTTTACAGACTGGTGTT
s panTro4.chr4             193218869 232 + 193495092 TAGTTTGTTGATCATTAATGTTT--GTTTCCTGTATG--AAAAAAATGTATGCATATATAATTCTCATTCTACATCTAGGTTCATTCATTCTATCTACTAATCCTTTTATTGCCTTTTAAAATCTGGTTAAGGAATTTATAAGATGACTGTCTAGACCAGAGGAACTCAACTGACAATGGAAGTGATGATTCTGGCAGCTAAGCTAGGTAGATCTTACT-------CTTTACAGACTGGTGTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198290445 232 + 198332218 tagtTTGTTGATCGTTAATGTTT--GTTTCCTGTATG--AAAAAAATGTACGCATATATAATTCTCGTTCTACATCTAGGTTCATTCATTCTGTCTACTAATCCTTTTATTGCCTTTTAAAATCTGATGAAGAAATTTATAAGATGACTATCTAGACCAGAGGAACTCAACTGACAATGGAAGTGATGATTCTGGCAGCTAAGCTAGGTAGATCTTACC-------CTTTACAGACTGGTGTT
i ponAbe2.chr4             I 479 C 0
s nomLeu3.chr7b            113962988 232 + 115148730 TAGTTTGTCGATTATTAATGTTTAAGTTTCCTGTATG----AAAAATGTATACATATATAATTCTTGTTCTACATCTAGGTTCATTCATTCTATCTACTAATCCTTTTATTGCCTTTTAAAATCTGGTTAAGGAATTTATAAGGTGACTGTCTAGACCAGAGGAACTCAACTGACAATGGAAGTGATGATTCTGGCAGCTAAGCTAGGTAGATCTTACC-------CTTTACAGACTGGTGTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183870547 220 + 184069350 TAGTTTGTTGATTATTAATATTTAAGTTTCCTGTATG-GAAAAAAATGTATGCATATATAGTTCTCATTCTACATCTAGGTTCATTCATTCTATCTACTGGTCCTTTTATTGCCTTTTAAAATCTGGTGAAGGAATTTATAAGATGACTGTCTAGACCAGAGGAACTCAACTGACAACGGAAGTGATGATTCTGGCAGC--------------CTTACC-------CTTTACAGAC-GGTGTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189264117 220 + 189454096 TAGTTTGTTGATTATTAATATTTAAGTTTCCTGTATG-GAAAAAAATGTATGCATATATAGTTCTCATTCTACATCTAGGTTCATTCATTCTATCTACTGGTCCTTTTATTGCCTTTTAAAATCTGGTGAAGGAATTTATAAGATGACTGTCTAGACCAGAGGAACTCAACTGACAATGGAAGTGATGATTCTGGCAGC--------------CTTACC-------CTTTACAGAC-GGTGTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178681893 220 + 178775436 TAGTTTGTTGATTATTAATGTTTAAGTTTCCtgtatg-gaaaaaaatgtatgcatatatagttCTCGTTCTACATCTAGGTTCATTCATTCTATCTACTGGTCcttttattgccttttaaaatCTGGTGAAGGAATTTATAAGATGACTGTCTAGACCAGAGGAACTCAACTGACAACGGAAGTGATGATTCTGGCAGC--------------CTTACC-------CTTTACAGAC-GGTGTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135615166 217 + 135778131 TAGTTTGTTGATTATTAA----TAAGTTTCCTGTATGAAAAAAAAATGTATGCATTTATAGTTCTCGTTCTACATCTAGGTTCATTCATTCTACCTACTGGTCCTTTTACTGCCTTTTAAAATCTGATGAAGGAATTTATAAGATGACTGTCTAGACCAGAGGAACCCAACTGACAACGGAAGTGATGATTCTGGCAGC--------------CTTACC-------CTTTACAGAC-GGTGTT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190726263 231 - 190850796 TAGTTTGTTGAGTATTAATGTTTAAGTTTCTTGTATA-----AAAAAGTATGCATATATAGTTCTTGTTCTACATCTAGGTTCATTCATTCTATCTACGGGTCCTTTCATTGCCTTTTAAAATCTGGTTAGGGAATTTATATGATGACTGTCTAGACAAGATGAACTGAACTGACAAGGGAGGTGATAACTCTGGCAGCTAAGCTAGGTACATCTCACC-------CTTCACAAACTGGTGTT
i calJac3.chr3             I 5 C 0
s canFam3.chr16             18169114 200 -  59632846 ----------------TATGCTTATGTTTCCTGTATT--AAAAA-------GTACCTATAGTTTTCCTTATATATTTTAGGATATAGAGTA-----------------AGAACCCTTTAAAATATAGAGTAAGAACTTACATTATAGATGTCTAGACTAGATGAATTCAACTGACAATGGCAATAAT-ACTCAGACAGCCAGACTGGGTAGATCTGACCAAGCAGTCCTTAAAGACAGATATC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87884989 416 - 129401213 I

a score=1148337.000000
s hg38.chr4_KI270925v1_alt    499136 327 +    555799 TCAAAAGGTCTTGCTCCTGTC-GAGGGGTGAGTTACTTCACCTCTAGTACAAGCCCAAGGTATCCTAAACCAA-ACAGCACTAACAGGGCCCACCCGTCTCTGGGCAGCAAAATA---TTTTTGTTTGTTGGTGTT-GCTATTTTTGTTTAT-AAATGTGT-CG-ATTTTGTCTAATCTGTAGACCATTCTTTACTGAACATGAGGAACAAGGCATCTTTCAga--tgtag-cagagttcagtgc-aaaagcactgagctgactaataatttggagacttgggttccaatactggttcatcattaaccagaggcattgcttcaggcaagtcaagggacct
s panTro4.chr4             193219101 327 + 193495092 TCAAAAGGTCTTGCTCCTGTC-GAGGGGTGAGTTACTTCACCTCTAGTACAAGCCCAAGGTATCCTAAACCAA-ACAGCACTAACAGGGCCCACCTGTCTCTGGGCAGCAAAATA---TTTTTGTTTGTTGGTGTT-GCTATTTTTGTTTAT-AAATGTGT-CG-ATTTTGTCTAATCTGTAGACCATTCTTTACTGAACATCAGGAACAAGGCATCTTTCAGA--TGtag-cagagttcagtgc-aaaagcactgagctaactaataatttggagacttgggttccaatactggttcatcattaaccagaggcattgcttcaggcaagtcaaaggacct
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198290677 336 + 198332218 TCAAAAGGTCTTGCTCCTGTT-GACGGGTGAGTTATTTCACCTCTAGTACAAGCCCAAGGTATCCTAAACCAACACAGCACTAACAGGGCCCACCTGTCTCTGGGCAGCAAAATGCGTTTTTGGTTTGTTGGTGCTGGCTATTTTTGTTTATAAAATGTGT-CGAATTTTGTCTAATCTATAGACCATTCTTTACTGAACATCAGGAACAAGGCATCTTTCAGA--TGTAGCCAGAgttcagtgctaaaagcactgagctgactaataacttggagacttgggttccaatactggttcatcattaaccaggggcattgcttcaggcaagtcaagggacct
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113963220 328 + 115148730 TCAAAAGGTCTTGCTCCTGTC-GAGGGGTGAGTTACTTCACCTCTAGGACAAGCCCAAGGTATCCTAAACCAA-ACAGCACTAACAGGGCCCACCTGTCTCTGGGCAGCAAAATG---TTTTTGTTTGTTGGTGTT-GCTATTTTCATTTAT-AAATGTGT-CG-ATTTTGTCTAATCTATAGACCATTCTTTTCTGAACATCAGGAACAAGGCGTCTTTCAGATGTGtag-cagagttcggtgc-agaagcactgagctgactaataatttggagacttgggttccaacactggttcatcattaaccagaggcattgc-tcaggcaagtcaagggacct
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183870767 328 + 184069350 TCACAAGGTCTTGTTCCTGTC-GAGGGGTGAGTTGCTTCATGTCTAGGACAAGCCCAAAGTATCCTAAACCAA-ACAGCACTTACAGGGCCTGCCTGTCTCTAGGCAGCAAAATG---TTTTTGTTTATTGGTGTT-TTTATTTTTGTCTAT-AAATGTGTCCG-TTTTTGTCTAATCTACAGACCACTCTTTACTGAACACCAGGAACAAGGCATCTTTCAGA--TGtgg-cagagctcagtgc-aaaagcactgacctgactggtaatttggagacttgggttccaatactggttcatcattaaccagaggcattgcttcaggcaagtcaaggaacct
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189264337 328 + 189454096 TCACAAGGTCTTGCTCCTGTC-GAGAGGTGAGTTGCTTCATGTCTAGGACAAGCCCAAAGTATCCTAAACCAA-ACAGCACTTACAGGGCCTGCCTGTCTCTAGGCAGCAAAATG---TTTTTGTTTATTGGTGTT-TTTATTTTTGTCTAT-AAACGTGTCCG-TTTTTGTCTAATCTACAGACCATTCTTTACTGAACACCAGGAACAAGGCATCTTTCAGA--TGtgg-cagagctcagtgc-aaaagcactgacctgactggtaatttggagacttgggttccaatactggttcatcattaaccagaggcattgcttcaggcaagtcaaggaacct
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178682113 328 + 178775436 TCACAAGGTCTTGCTCCTGTC-GAGGGGTGAGTTGCTTCATGTCTAGGACAAGCCCAAAGTATCCTAAACCAA-ACAGCACTTACAGGGCCTGCCTGTCTCTAGGcagcaaaatg---tttttgtttgttggtgtt-tttatttttgtctat-aaacgtgtccg-tttttgtCTAATCTACAGACCATTCTTTACTGAACACCAGGAACAAGGCATCTTTCAGA--TGTGG-CAGAGCTCAGTGC-AAAAGCACTGACCTGACTGGTAATTTGGAGACTTGGGTTCCAATACTGGTTCATCATTAACCAGAGGCATTGCTTCAGGCAAGTCAAGGAACCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135615383 326 + 135778131 TCACAAGGTCTTGCTCCTGTC-AAGGTGTGAGTTGCTTCATGTCTAGGACAAGCCCAAAGTATCCTAAACCAA-ACAGCACTTACAGGGCCTGCCTGTCTCTAGGCAGCAAAATG---TTTTTGTTTGTTGGTGTT-TTTATTTTTGTCTAT-AAATATGT-CG-TTTTTGTCTAATCTATAGACCATTC-TTACTGAACACCAGGAACAAGGCATCTTTCAGA--TAtgg-cagagctcagtgc-aaaagcactgacctgactggtaatttggagacttgggttccgatactgattcatcattaaccagagccattgtttcgggcaagtcaaggaacct
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190726494 327 - 190850796 TCAAAAGGTCTTGCTCCTGTT-GGGGGGTGAGTTACTTCATGTCTAGGACAAGCCCAAAGTATCCTAAACCAA-ATAGCACCAACAGGGCCTGCCTGTCTCTAGGTAGCAAAATG---TTTTTGTTTGTTGGTGTT-TCTCTTTCTGCTTAT-AAATGTGT-CA-GTTTTGTCTAATCTATAGACCATTCTTTACTGAACATGAGGCACAAGTCATCTTTcaga--tatag-ccgagttcagtgc-aaaagcactgagctgactggtaatttggagacttgggtttcaatactggttcatcattaactagagctgttgcttcaggcaagtcaaggagtct
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87885405 312 - 129401213 TCATGAAGTTTTGCTTCCACCAGAGAGATGGCCCACTCTGCTTCCAGGACAAGCTAAAAG----------CAA-ATAGTACTAAGAGGACCCACCTGTTTCTAGGCAAGAAAAAG---ATGT--TTCATTTGTATT-TGGCTTTCT-CATAT-GAATG-GT-CA-ATTGTGTCCAAGTTCTGGGCTGCTCCTTACTGAGCCTAGGACACAAGGCATCTTTCAGA--GAGAG-CAGAGTTGAGAGC-AGAAGCACTGGGCTGCCTGGCTTGTTGAAGACATGAGTTCTAGTGCTGGTTCATTGCTACCAGGAGACTTT--TTCTGGCAGACCATGAGACTT
i mm10.chr8                I 416 I 13933
s canFam3.chr16             18169314 312 -  59632846 TTAAGAGGTCTTGCTTCTAAT-GGAGGATGATGTGTTTGACTTCTGGGACAAGCCCAACGTATC--------A-ACTGCATGAATGGGACCCACATTTTTCTAGGTAGAAAAAGG---T-----TTTGTTTGTGTT-TGTCATTTT-CTTTT-AAATATGT-CA-ATTTAGTTCAAGCTATGGACTGTTCTTCACTGAGAATGGGGCACAAGGAATCTTTCAGA--TGTAG-AAGAGTTCAGTGC-AAAATCATTGAGCTAAAGGATCAtccaaagccttggattctaatactagtacccc-ttacacggagacactgcttccagtaaatcaaggaacct
i canFam3.chr16            C 0 C 0

a score=674015.000000
s hg38.chr4_KI270925v1_alt    499463 212 +    555799 ctttagatctaatctataaactaggggaaaaagaataaatgaaatataagaaaagattcctt-tagctataaaagtttatgattctatATGTCAAAA-CCACCAG-AAAATCTTAGACCTCACCTGGAACTTTAAAGACCAGAGTTCCCTA-CGAAGGGATTCAGGACCCTTCAGGACACATATAAACTC-ACAACAATGGACCTCATATGCCTGGA
s panTro4.chr4             193219428 212 + 193495092 cttaagatctaatctataaactaggggaaaaagaataaatgaaatataagaaaagattcctt-tagctataaaagtttatgattctatATGTCAAAA-CCACCAG-AAAATCTTAGACCTCACCTGGAACTTTAAAGACCAGACTTCCCTA-CGAAGGGATTCAGGACCCTTTAGGACACATATAAACTC-ACAACAATGGACCTCATATGCCTGGA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198291013 217 + 198332218 ctttagatctcatctataaactaggggaaaaagaataaatgaaatataagaaaagattccttcccactataaaagcttatgattctatATGTCAAAACCCACCAGAAAAATCTTAGACCTCACTTGGAACTTTAAAGACCAGACTTCCCTACCAAAGGGATTCAGGACCCTTTAGGACACATATAAACTCTACAACAATGGACCTCATATGCCTGGA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113963548 212 + 115148730 ctttagatctaatctataaactaggggaaaaagaataaatgaaatataagaaaagcttcctt-tagctataaaagtttacgattctatATGTCAAAA-CCACCAG-AAAATCTTAGACCTCACCTGGAACTTTAAAGACCAGACTTCCCTA-GAAAGGGATTCAGGACCCTTTAGGACACATATAAACTC-ACAACAATGGACCTCATATGCCTGGA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183871095 212 + 184069350 ctttagatctaatctgtaaactaggggaaaaacaataaatgaaatataagagaagattcctt-tagctatagaagcttatgattctatATGTCAAAA-CCCCCAG-AAAATCTTAGACATCACCTAGACCTTTAAAGATCAGACTTCCCTA-CGAAGGCATTCAGGACCCTTTAGGACACGTATAAACCC-ACAACAATAGACCTCATATGCCTGGA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189264665 212 + 189454096 ctttagatctaatctgtaaactaggggaaaaacaataaatgaaatataagagaagattcctt-tagctatagaagcttatgattctatATGTCAAAA-CCCCCAG-AAAATCTTAGACATCACCTAGACCTTTAAAGATCAGACTTCCCTA-CGAAGGCATTCAGGACCCTTTAGGACACGTATAAACCC-ACAACAATAGACCTCATATGCCTGGA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178682441 212 + 178775436 CTTTAGATCTAATCTGTAAACTAGgggaaaaacaataaatgaaatataagagAAGATTCCTT-TAGCTATAGAAGCTTATGATTCTATATGTCAAAA-CCCCCAG-AAAATCTTAGACATCACCTAGACCTTTAAAGACCAGACTTCCCTG-CGAAGGCGTTCAGGACCCTTTAGGACATGTATAAACCC-ACAACAATAGACCTCATATGCCTGGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135615709 212 + 135778131 ctttagatctaatctgtaaactaggggaaaaagaataaatgaaatataagagaagattcctt-tagctatagaagtttatgattctatATGTCAAAA-CCCCCAG-AAAATCTTAGACATCACCTAGACCTTTAAAGATCAGACTTCCCTA-CAAAGGGATTCAGGACCCTTTAGGACATGTATAAACCC-ACAACAATAGACCTCATATACCTGGA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190726821 209 - 190850796 cttcagacctaatccat--actagaagaaaaaggataaattaaatataagaaaagatccctt-tagctataacagtttataattctgtATGTCAGAA-CCACCAG-AGAGTCTTAGACATCACCTGGAACTTTAAAGTTCAGACTTCCCTA-CGAAAGGATTCAGGACTCTTTAGGACACAAAT-AACTC-CTAACAATGGACCTCACAGGCCTGGA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18169626 212 -  59632846 cattaggcctcatctattagacgagggaaaagaaataaacaaaatataaggaaaaatccattctagctctaaaagtctgtgattccatATGTCAAAG-CTAACAA-AGGATCCCAGATATCATCTGGCCTCCTGAAGTTCCTACAGTTATA--AAAAGGATCCAAGCCTATTCAGGTCACATATAGACTC-ACAACAATAAAATCCATGTTCCTGAA
i canFam3.chr16            C 0 I 210
e mm10.chr8                 87885717 13933 - 129401213 I

a score=1988022.000000
s hg38.chr4_KI270925v1_alt    499675 762 +    555799  
s panTro4.chr4             193219640 773 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198291230 808 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113963760 761 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183871307 757 + 184069350  
i rheMac3.chr5             C 0 I 282
s macFas5.chr5             189264877 760 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178682653 760 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135615921 756 + 135778131  
i chlSab2.chr7             C 0 I 279
s calJac3.chr3             190727030 677 - 190850796  
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87885717 13933 - 129401213 I
e canFam3.chr16             18169838 210 -  59632846 I

a score=11628.000000
s hg38.chr4_KI270925v1_alt    500437 8 +    555799 tgtaattg
s panTro4.chr4             193220413 8 + 193495092 cgtaattg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198292038 8 + 198332218 cataattg
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113964521 8 + 115148730 cataattg
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189265637 8 + 189454096 catacttg
i macFas5.chr5             C 0 I 274
s papAnu2.chr5             178683413 8 + 178775436 catacttg
i papAnu2.chr5             C 0 I 274
s calJac3.chr3             190727707 8 - 190850796 cataattg
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87885717 13933 - 129401213 I
e canFam3.chr16             18169838 210 -  59632846 I
e chlSab2.chr7             135616677 279 + 135778131 I
e rheMac3.chr5             183872064 282 + 184069350 I

a score=2000.000000
s hg38.chr4_KI270925v1_alt    500445 2 +    555799 cc
s panTro4.chr4             193220421 2 + 193495092 cc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198292046 2 + 198332218 cc
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113964529 2 + 115148730 cc
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190727715 2 - 190850796 cc
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87885717 13933 - 129401213 I
e canFam3.chr16             18169838 210 -  59632846 I
e chlSab2.chr7             135616677 279 + 135778131 I
e papAnu2.chr5             178683421 274 + 178775436 I
e macFas5.chr5             189265645 274 + 189454096 I
e rheMac3.chr5             183872064 282 + 184069350 I

a score=2624935.000000
s hg38.chr4_KI270925v1_alt    500447  988 +    555799  
s panTro4.chr4             193220423  992 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198292048 1006 + 198332218  
i ponAbe2.chr4             C 0 I 11
s nomLeu3.chr7b            113964531  999 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183872346  991 + 184069350  
i rheMac3.chr5             I 282 I 3929
s macFas5.chr5             189265919  981 + 189454096  
i macFas5.chr5             I 274 C 0
s papAnu2.chr5             178683695 1005 + 178775436  
i papAnu2.chr5             I 274 C 0
s chlSab2.chr7             135616956  975 + 135778131  
i chlSab2.chr7             I 279 I 179
s calJac3.chr3             190727717  992 - 190850796  
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87885717 13933 - 129401213 I
e canFam3.chr16             18169838  210 -  59632846 I

a score=180814.000000
s hg38.chr4_KI270925v1_alt    501435 178 +    555799 atatatatatata-----tttattatacttta-agttctagagcacatgcgcacaacgtgcaggtttgttacgcatgcctatatgtgtttttaaaagtaagatgagtatcttgtaggtagcatataactgggtcttgtttttaatccattcagccactctgtctttttattggag---------catttacat
s panTro4.chr4             193221415 187 + 193495092 atatatatatata-----tttattatacttta-agttctagagtacatgcgtacaacgtgcaggtttgttacacatgtctatatgtgtttttaaaagtaagatgagtatcttgtaggtagcatataactgggtcttttttttaatccattcagctactgtgtctttttattggagaatttaatacatttacat
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198293065 188 + 198332218 atatatatatata-----taaataatactttatagttctagagtacatgtgcacaacgtgcaggtttgttacatatgtctatatgtgtttttaaaagtaagatgagtatcttgtaagtagcatgtaactgggtcttgtttttaatccattcagccactctgtctttttattgcagcatttaatacatttacat
i ponAbe2.chr4             I 11 C 0
s nomLeu3.chr7b            113965530 192 + 115148730 ttttataaatatattttttttattatacttta-agttctagagtacatgtgcacaacttgcaggtttgttacatatgtctatatgtgtttttaaaagtaagatgagtatcttgtaggtagcatataactgggtcttgtttttaatccattcagccactctgtctttttattggggcatttaatacatttacat
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189266900 114 + 189454096 ------------------------------------------------------------------------------tgatatgtgtttttaaaagtgaggtgagtatcttgtaggtagcatataactgggtcttg-ttttaatccattcagtcactctgtctttttattggagcatttgatacatttacat
i macFas5.chr5             C 0 I 74
s papAnu2.chr5             178684700 114 + 178775436 ------------------------------------------------------------------------------TGATACGTGTTTTTAAAAGTGAGGTGAGTATCTTGTAGGTAGTATATAACTGGGTCttg-ttttaatccattcagtctctctgtctttttattgGAGCATTTGatacatttacat
i papAnu2.chr5             C 0 I 74
s calJac3.chr3             190728709 111 - 190850796 ----------------------------------------------------------------------------------atgtgtttttaaaagtcagatgagtatcttgtaggtaacatataattgggtcttgtttttaatccattcagccactttgtctattcattggagcatttaatacatttatat
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87885717 13933 - 129401213 I
e canFam3.chr16             18169838 210 -  59632846 I
e chlSab2.chr7             135617931 179 + 135778131 I
e rheMac3.chr5             183873337 3929 + 184069350 I

a score=2349246.000000
s hg38.chr4_KI270925v1_alt    501613 1092 +    555799  
s panTro4.chr4             193221602 1097 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198293253 1101 + 198332218  
i ponAbe2.chr4             C 0 I 2690
s nomLeu3.chr7b            113965722 1096 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189267088 1119 + 189454096  
i macFas5.chr5             I 74 C 0
s papAnu2.chr5             178684888 1119 + 178775436  
i papAnu2.chr5             I 74 C 0
s chlSab2.chr7             135618110 1105 + 135778131  
i chlSab2.chr7             I 179 C 0
s calJac3.chr3             190728820 1116 - 190850796  
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87885717 13933 - 129401213 I
e canFam3.chr16             18169838  210 -  59632846 I
e rheMac3.chr5             183873337 3929 + 184069350 I

a score=-4911.000000
s hg38.chr4_KI270925v1_alt    502705 4 +    555799 aaa-t
s panTro4.chr4             193222699 4 + 193495092 aaa-t
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113966818 4 + 115148730 aaa-t
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189268207 1 + 189454096 --a--
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178686007 1 + 178775436 --a--
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135619215 2 + 135778131 --ag-
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190729936 4 - 190850796 aaa-t
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87885717 13933 - 129401213 I
e canFam3.chr16             18169838 210 -  59632846 I
e rheMac3.chr5             183873337 3929 + 184069350 I
e ponAbe2.chr4             198294354 2690 + 198332218 I

a score=395540.000000
s hg38.chr4_KI270925v1_alt    502709 179 +    555799 ttattttttttaatttttgctactctgattggataatatcaaatgttctatcttccagttcactgattcttcttttagcttgatcaaacctgctgtgggagctttca-gttgcatctttt-cagttcagtcattgtattcttcaactcttgaatttctgttggtttttaagaattatttct
s panTro4.chr4             193222703 179 + 193495092 ttattttttttaatttttgctactctgattggataatatcaaatgttctatcttccagttcactgattcttcttttagcttgatcaaacctgctgtgggagctttca-gttgcatctttt-cagttcagtcattgtattcttcaattcttgaatttctgttggtttttaagaattatttct
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198297044 181 + 198332218 ttatttttttaaatttttgctactctgattggataatatcaaatgttctctcttccatctcactgattcttcttttagcttgatcaaacctgctgtgggagctttcaggttgcatcttttccagttcagtcattgtattcttcaactcttgaatttctgttggttttcaagaattatttct
i ponAbe2.chr4             I 2690 C 0
s nomLeu3.chr7b            113966822 179 + 115148730 ttatttttttaaatttttgctactctgattggataatatcaaatgttctgtcttctagctcactgattcttcttttagcttgatcaaacctgctgtgcgagctttca-attgcatctttt-cagttcagtcattgtattcttcaactcttgaatttctgttggtttttaagaattatttct
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189268208 177 + 189454096 --tttttttttaatttttgccactctgattgggtaatatcaaatgttctgtcttccagttcactgattcttcttctagcttgatcaagcctgctgtgggagctttca-attgcatctttt-cagttcagtcattgtgttcttcaagtcttgaatttctattggtttttaagaattatttct
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178686008 176 + 178775436 ---ttttttttaatttttgccactCTGATTGGATAATATCAAATGTTCTGTTTTccagttcactgattcttctTCTAGCTTGATCAAGCCTGCTGTGGGAGCTTTCA-ATTGCATCTTTT-CAGTTCAGTCATTGTGTTCTTCAAGTCTTGAATTTCTACTggtttttaagaattatttct
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135619217 179 + 135778131 tatttttttttaatgtttgccactctgattggataatatcaaatgttctgtcttccagttcactgattcttcttctagcttgatcaagcctgctgtgggagctttca-attgcatctttt-cagttcagtcattgtgttcttcaagtcttgaatttctattggtttttaagaattatttct
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190729940 173 - 190850796 -tttttttttaattttttgctactctgattggataatatcacatg-tctgtcttcaagctcattaattcttcttttagtttgatcgagcctgttgcgggagctctca-attgcatctttt-cagttctgtcattgtattcttcaactcttgaatttctatttttttt----aattatacct
i calJac3.chr3             C 0 I 1243
e mm10.chr8                 87885717 13933 - 129401213 I
e canFam3.chr16             18169838 210 -  59632846 I
e rheMac3.chr5             183873337 3929 + 184069350 I

a score=2012189.000000
s hg38.chr4_KI270925v1_alt    502888 1207 +    555799  
s panTro4.chr4             193222882 1207 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198297225 1226 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113967001 1206 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189268385 1185 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178686184 1185 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135619396 1183 + 135778131  
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87885717 13933 - 129401213 I
e canFam3.chr16             18169838  210 -  59632846 I
e calJac3.chr3             190730113 1243 - 190850796 I
e rheMac3.chr5             183873337 3929 + 184069350 I

a score=562631.000000
s hg38.chr4_KI270925v1_alt    504095 290 +    555799 AAActcctgagtgtgacaacactagccctggatctttgccaaaatttgctgtagtggttatctccctccctggacatgttctc-agggtagggtct-------------gaggctggtcatctaaggattcaagccaggtagaacttcccaccgcttctgagggtgaccagctcagatttgcaggtgggtatgg-tgttagctggtactattgattgggtgctactgctggcaggtgtgcagagctacagccaggatctgtctg------cttgtcactgtggactctgcctcctcgctttgcttctatct
s panTro4.chr4             193224089 289 + 193495092 AAActcctgagtgtgacaacactagccctgggtctttgccaaaaattgctgtagtggtta-ctccctccctggacatgttctc-agggtagggtct-------------gaggctggtcatctaaggattccagccaggtagaacttcccaccacttctgagggtgaccagctcagatttgcaggtgggtatgg-tgttagctggtactattgattgggtgctactgctggcaggtgtgcagagctacagccaggatctgtctg------cttgtcactgtggactatgcctcctcgctttgcttctatct
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198298451 291 + 198332218 AAActcctgagtgtgacaacactagccctgggtctttgccaaaatttgctgtagtggttatctccctccctggacatgttctcgagggtagggtct-------------aaggctggtcctctaaggattcaagccaggtagaacttcccaccacttctgagggtgaccagctcagatttgcaggtgggtatgg-tgttagctggtactactgattgggtgctactgctggcaggtgcgcagagctacagccagaatctgtctg------tttgtcactgtggactctgcctcctcgctttgcttctatct
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113968207 290 + 115148730 AAACTCCTCAGTGTTGCAACActagccctggatctttgccagaatttgctctagtggttatctccctccctggacatgttctt-agggtagggtct-------------gaggctggtcatctaaggattcaagccaggtagaacttcccaccacttctgagggtgaccagctcagatttgcaggtgggtatgg-tgttagctggtactattgattgggtgctactgctggcaggtgtgcagagctacagccaggatctgtctg------cttgtcaccgtggactctgcctcctcgctttgcttctatct
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189269570 290 + 189454096 AAActcctgagtacgacaacactagccctgggtctttgccaaaatttgctgcagtggttatctcgctccctggacatgttctc-agggcagggtct-------------gaggttggtcatctgaggattcaagccaggcagaacttcccaccacttctgagggtgaccagctcagatttgcaggtgggtatgg-ggttagctggtactattgattgggtgctactgctggcaggtgcacagagctacaaccaggatctgtctg------cttgtcactgtggactctgcctcctctctttgcttctatct
i macFas5.chr5             C 0 I 557
s papAnu2.chr5             178687369 290 + 178775436 AAACTCCTGAGTACGACAACACTAGCCCTGCGTCTTTGCCAAAATTTGCTGCAGTGGTTATCTCGCTCTCTGGACATGTTCTC-AAGGCAGGGTCT-------------GAGGTTGGTCATCTGAGGATTCAAGCCAGGCAGAACTTCCCACCACTTCTGAGGGTGACCAGCTCAGATTTGCAGGTGGGTATGG-GGTTAGCTGGTACTATTGATTGGGTGCTACTGCTGGCAGGTGCACAGAGCTACAACCAGGATCTGTCTG------CTTGTCACTGTGGACTCTGCCTCCTCTCTTTGCTTCTATCT
i papAnu2.chr5             C 0 I 277
s chlSab2.chr7             135620579 290 + 135778131 AAActcctgagtacgacaacactagccctgggtctttgccaaaatttgctgcagtggttatctcgctccctggacatgttctc-agggcagggtct-------------gaggttggtcatctgaggattcaagccaggcagaacttcccaccacttctgagggtgaccagctcagacttgcaggtgggtatgg-ggttagctggtactattgatttggtgctactgctggcaggtgcacagagctacaaccaggatctgtctg------cgtgtcactgtggactctgcctcctcgctttgcttctatct
i chlSab2.chr7             C 0 I 898
s mm10.chr8                 87899650 306 - 129401213 AAACTACTGC-TATGACATCTCTAGTCCGTTCCCTTTTCTCAAATCTACTACTGTGGTCATCTCCTACTTTGGACA-GTATTC-CAggcagggcctaaacatagtcctggagactggtcacctagagatcaaatgaggttagacattctttaaatttctgcatgtgacatgatcggttttacaggtattatcggctctcagctagcacctcttgctgtcccctattgctagctaataaacacagataacctcaagatct-tctgttctttctggccaatgtgggctctaccatcgtgctttcatacactt-
i mm10.chr8                I 13933 C 0
e canFam3.chr16             18169838 210 -  59632846 I
e calJac3.chr3             190730113 1243 - 190850796 I
e rheMac3.chr5             183873337 3929 + 184069350 I

a score=-1240.000000
s hg38.chr4_KI270925v1_alt    504385 1 +    555799 -c
s panTro4.chr4             193224378 1 + 193495092 -c
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198298742 1 + 198332218 -c
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113968497 1 + 115148730 -c
i nomLeu3.chr7b            C 0 C 0
s mm10.chr8                 87899956 1 - 129401213 g-
i mm10.chr8                C 0 C 0
e canFam3.chr16             18169838 210 -  59632846 I
e calJac3.chr3             190730113 1243 - 190850796 I
e chlSab2.chr7             135620869 898 + 135778131 I
e papAnu2.chr5             178687659 277 + 178775436 I
e macFas5.chr5             189269860 557 + 189454096 I
e rheMac3.chr5             183873337 3929 + 184069350 I

a score=45737.000000
s hg38.chr4_KI270925v1_alt    504386 18 +    555799 acccaaggtggtctagcc
s panTro4.chr4             193224379 18 + 193495092 acccaaggtggtctagcc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198298743 18 + 198332218 tcccaaggtggtctagcc
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113968498 18 + 115148730 acccaaggtgttctagtc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183877266 18 + 184069350 acccaaggtggtctagct
i rheMac3.chr5             I 3929 C 0
s macFas5.chr5             189270417 18 + 189454096 acccaaggtggtctagct
i macFas5.chr5             I 557 C 0
s papAnu2.chr5             178687936 18 + 178775436 ACCCAAGGTGGTCTAGCT
i papAnu2.chr5             I 277 C 0
s chlSab2.chr7             135621767 18 + 135778131 acccaaggtggtccagcc
i chlSab2.chr7             I 898 C 0
s mm10.chr8                 87899957 17 - 129401213 -acccagaaagtctaacc
i mm10.chr8                C 0 C 0
e canFam3.chr16             18169838 210 -  59632846 I
e calJac3.chr3             190730113 1243 - 190850796 I

a score=104332.000000
s hg38.chr4_KI270925v1_alt    504404 58 +    555799 atgccatttcccctctgttcctcctgag-gtgagaccagagtgggcttcctgggaagca
s panTro4.chr4             193224397 58 + 193495092 atgccatttcccctctgttcctcctgag-gtgagagcagagtgggcttcctgggaagca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198298761 58 + 198332218 gtgccgtttcccctctgctccccctgag-gtgagaccagagtgggcttcctgagaagca
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183877284 58 + 184069350 acgccacttcccctctattccccttgag-gtgagatcagagtgagcttcctggggagca
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189270435 58 + 189454096 acgccacttcccctctattccccttgag-gtgagatcagagtgagcttcctggggagca
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178687954 58 + 178775436 ACGCCACTTCCCCTCTATTCCCCTTGAG-GTAAGATCAGACTGAGCTTCCTGAGGAGCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135621785 58 + 135778131 acgccacttcccctctattccccctgag-ctgagaccagagtgggcttcctggggagca
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87899974 55 - 129401213 atgccat---ccccatgctgctaaaaagagtcagagtagaatgggcttcct-aaaagca
i mm10.chr8                C 0 C 0
e canFam3.chr16             18169838 210 -  59632846 I
e calJac3.chr3             190730113 1243 - 190850796 I
e nomLeu3.chr7b            113968516  0 + 115148730 C

a score=786921.000000
s hg38.chr4_KI270925v1_alt    504462 330 +    555799 tctcagaatgctagggaagcttcatgtctgcctctgattctccttttgctctgtaggaactgtagtttctggggaatt-ccatctgcgaggtgc--tgtgctgacttaggggaggaggaggagagacatggtcaacatgggattgtttttcttaccctttaatgtagtgtttattcctttctgg--accacacagctgactctggcttattcccacatgttagggttttcaccaaggtattcttgtctgcaggtgtttgctagctgaactttctgtgtgtggcaggcggcaggagatggtagtgaag-ccagggtcctcttatt----ctgccatcttgc
s panTro4.chr4             193224455 330 + 193495092 tctcagaatgctagggaagcttcatgtctgcctctgattctccttttgctctgtaggaactgtagtttctggggaatt-ccatctgcgaggtgc--tgtgctgacttaggggaggaggaggagtgacatggtcaacatgggattgtttttcttaccctttaatgaagtgtttattcctttctgg--accacacagctgactctggcttattcccacatgttagggttttcaccaaggtattcttgtctgcaggtgtttgctagctgaactttctgtgtgtggcaggcggcaggagatggtagtgaag-ccagggtcctcttatt----ctgccatcttgc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198298819 331 + 198332218 tctcagaatgctagggaagcttcatgtctgcctctgattctccttttgctctgtatgaaccatagtttctggggaatt-ccatctgcgaggtgc--tgtgctgacttaggggaggaggaggagtgacatggtcaacatgggattgtttttcttaccctttaatgtaatgtttattcctttctgg--aacacacagctgactctggcttattcccacatgctagggttttcaccaaggtattcttgtctgcaggtgattgctagctgaactttctgtgtgtggcagggggcaggagatggtagtgaagtcccgggtcctcttatt----ctgccatcttgc
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183877342 330 + 184069350 tctcagaatgctaaggaagcttcgtgtctgcctctgattctccttttgctctgtaggaacagtagtttctggggaatt-ctatccgtgaggtgc--tgtgctgacttaggggaggaggaggagtgacatggtcaacatgggattgtttttcttaccctttaatgtagtgcttattccattctgg--accacacagctgactctggcttattcccatatgttagggttttcaccaaggtattcttgtctgcaggtggttgctagctgaactttctgcatgtggcagggggcaggagatgggagcgaag-cctgggtcctcttatt----ctgccgtcttgc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189270493 330 + 189454096 tctcagaatgctaaggaagcttcgtgtctgcctctgattctccttttgctctgtaggaacagtagtttctggggaatt-ctatccgtgaggtgc--tgtgctgacttaggggaggaggaggagtgacatggtcaacatgggattgtttttcttaccctttaatgtagtgtttattccattctgg--accacacagctgactctggcttattcccatatgttagggttttcaccaaggtattcttgtctgcaggtggttgctagctgaactttctgcatgtggcagggggcaggagatgggagcgaag-cctgggtcctcttatt----ctgccgtcttgc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178688012 327 + 178775436 TCTCAGAATGCTAAGGAAGCTTCGTGTCTGCCTCCGATTCTCCTTTTGCTCTGTAGGAACAGTAGTTTCTGGGGAATT-CTATCCGTGAGGTGC--TGTGCTGACTTAGG---GGAGGAGGAGTGACATGGTCAACATGGGATTGTTTTTCTTACCCTTTAATGTAGTGTTTATTCCATTCTGG--ACCACACAGCTGACTCTGGCTTATTCCCATATGTTAGGGTTTTCACCAAGGTATTCTTGTCTGTAGGTGGTTGCTAGCTGAACTTTCTGCATGTGGCAGGGGGCAGGAGATGGGAGCGAAG-CCTGGGTCCTCTTATT----CTGCCGTCTTGC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135621843 331 + 135778131 tctcagaatgctaaggaagcttcatgtctgcctctga-tctctttttgctctgcaggaacagaggtttctggggaatt-ctatctgtgaggtgcagtgtgctgacttacggtaggaggaggagtgacatggtcaacatgggattgtttttcttaccctttaatgtagtgtttattccattctgg--accacacagctgactctggcttatttccacatgttacggttttcaccaaggtgttcttgtctgcaggtggttgctagctgaactttctgtgtgtggcagggggcaggagatggtagcaaag-cctgggtcctcttatt----ctgccatcttgc
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190731356 331 - 190850796 tctcagaatgctagggaagcttcatgtctgcctctggttctctttttcctctgcagaaactgtggtttctggggaatt-ctacctgtgaggtgc--tgtgctgacttaga---ggaggaggagggacactgtcatcatgggattgtttttcttaccctttaatgtggtgtttattccattctgg--aacacacagctgactctggctcattccaacatgttggggttttcaccaaggaattcttgtctgtggatggttgctagctgaactttccgtgtgtggcaggggacagggaatggtagtgaag-cctgggccacttcacgttgactgccatcttgc
i calJac3.chr3             I 1243 C 0
s mm10.chr8                 87900029 293 - 129401213 tcccagaacactggagtcagtaaatatgcacctagtcctctcttttccccctggccaatctgcactctctggggaattactttctccatagctt--catgccaacttgga---agctgatcagcaatcctgtcaa---ggaat--ttctcttgacatttgtatgtattttctatttctcccgtgtttctacactggcaacttgggattgcttccaggcttcaagggtcataccaaagtattgctatttgtggatagctaccagctgaagtttttgt---------------gggaatg--aatagag----------------t----gtgggagctTGC
i mm10.chr8                C 0 C 0
e canFam3.chr16             18169838 210 -  59632846 I
e nomLeu3.chr7b            113968516   0 + 115148730 C

a score=255219.000000
s hg38.chr4_KI270925v1_alt    504792  99 +    555799 tgacatca-ctcC-AAATCA----CAATTATCAATTTTGCTGAATGCAAGTTACAACTGTAAAAACATTTCCAGAATTTTGAGAGCACA-TAACA-TTATTAGACCA
s panTro4.chr4             193224785  98 + 193495092 tgacatca-ctcC-AAATCA----CAATTATCAATTT-GGTGAATGCAAGTTACAACTGTAAAAACATTTCCAGAATTTTGAGAGCACG-TCACA-TTATTAGACCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198299150 100 + 198332218 tgacgtca-ctcCAAAATCA----CAATTTTCAATTTTGCTGAATGCAAGTTACAACTGTAAAAACATTTCCAGAATTTTGA-AGCACG-AAACATTTATTAGACCA
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183877672  99 + 184069350 tggtgtca-ctcC-AAATCA----CAATTATCAATTTTGCTGAATGCAAGTTACAACTGTAAAAACATTTCCAGAATTTTGAGAGCATA-TAACA-TTATTAGACCA
i rheMac3.chr5             C 0 I 6
s macFas5.chr5             189270823  99 + 189454096 tggtgtca-ctcC-AAATCA----CAATTATCAATTTTGCTGAATGCAAGTTACAACTGTAAAAACATTTCCAGAATTTTGAGAGCATA-TAACA-TTATTAGACCA
i macFas5.chr5             C 0 I 6
s papAnu2.chr5             178688339  99 + 178775436 TGGTGTCA-CTCC-AAATCA----CAATTATCAATTTTGCTGAATGCAAGTTACAACCGTAACAACATTTCCAGAATTTTGAGAGCATA-TAACA-TTATTAGACCA
i papAnu2.chr5             C 0 I 6
s chlSab2.chr7             135622174  99 + 135778131 tcgtgtca-ctcC-AAATCA----CAATTACCAATTTTGCTGAATGCAAGTTACAACCGTAAAAACATTTCCAGAATTTTGAGAGCATG-TAACA-TTATTAGACCA
i chlSab2.chr7             C 0 I 6
s calJac3.chr3             190731687  99 - 190850796 tgatgtca-ctcC-AAATCA----CAATTATCAATCTTGCTGAATGCAAGTTACAACTGGGAAAACATTTCTAGAATTTTGAAAGCATG-TAACA-TTATTGGACCA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87900322  95 - 129401213 TGCTAACA-TTCT-GCAATC----CAGGCATAAATTGTGCTCAATGCAAATGTAAGATCTAATGGC---CCCTGCACTTCGAAAGGA-G-GAACA-GCAATAAGCCA
i mm10.chr8                C 0 C 0
s canFam3.chr16             18170048 105 -  59632846 TGCCATCATTTCC-ACATTAAAAGCAATTATCAGTTTTGTTCAATGCAAATTTAGGTTTTAATAACATTTTCAGAATTTAGAAAACATATTAACA-CAACTAGACTA
i canFam3.chr16            I 210 C 0
e nomLeu3.chr7b            113968516   0 + 115148730 C

a score=2718890.000000
s hg38.chr4_KI270925v1_alt    504891 756 +    555799  
s panTro4.chr4             193224883 762 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198299250 771 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113968516 754 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183877777 756 + 184069350  
i rheMac3.chr5             I 6 C 0
s macFas5.chr5             189270928 756 + 189454096  
i macFas5.chr5             I 6 C 0
s papAnu2.chr5             178688444 756 + 178775436  
i papAnu2.chr5             I 6 C 0
s chlSab2.chr7             135622279 757 + 135778131  
i chlSab2.chr7             I 6 C 0
s calJac3.chr3             190731786 759 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87900417 715 - 129401213  
i mm10.chr8                C 0 I 534
s canFam3.chr16             18170153 706 -  59632846  
i canFam3.chr16            C 0 C 0

a score=2433759.000000
s hg38.chr4_KI270925v1_alt    505647 739 +    555799  
s panTro4.chr4             193225645 739 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198300021 747 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113969270 738 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183878533 761 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189271684 761 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178689200 759 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135623036 759 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190732545 773 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87901666 748 - 129401213  
i mm10.chr8                I 534 C 0
s canFam3.chr16             18170859 732 -  59632846  
i canFam3.chr16            C 0 I 3872

a score=629542.000000
s hg38.chr4_KI270925v1_alt    506386 218 +    555799 CTTCACTAGCTCattcatttaccagt--------------gggcaaccatagcaaaactatcacaaactgggtgactt-aaacaacaggaatttattctgtctcagttctggaggtcagaa-gtctggaagcaagatgacagcatggtcgattcctacttggggactcagagagaggagccgtctcacgctttcctccca---gcttctggtggttg----------------ccgccagtccctggcatccc
s panTro4.chr4             193226384 219 + 193495092 CTTCACTAGCTCattcatttaccagt--------------gggcaaccatagcaaaactatcacaaactgggtgactt-aaacaacaggaatttattctgtctcagttctggaggtcagaaagtctggaagcaagatgacagcatggtcaattcctacttggggactcagagagaggagccgtctcacgctttcctccca---gcttctggtggttg----------------ccgtcagtccctggcatccc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198300768 218 + 198332218 CTTCACTAGCTCattcatttaccagt--------------gggcaaccatagcaaaactatcacaaactgggtgactt-aaacaacgggaattcattctgtctcggttctggacgtcagaa-gtctggaagcaagatgacagcatggtcgattcctacttggagactcagggagaggagccgtctcatgctttcctccca---gcttctggtggttg----------------ccatcagtccctggcgtcca
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113970008 234 + 115148730 CTTCACTAGCTCattcatttaccagt--------------gggcaaccatagcaaaactatcgcaaactgggtgactt-caacaacaggaatttattctgtctcagttctggaggtcagaa-gtctggaaggaagatgacagcatggccgattcctacttggagactcagagagaggagccatctcatgctttcctccca---gcttctggtggttggaggacgtccaaccacacgtcagtccctggcgtccc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183879294 217 + 184069350 CTTCAGTAGTTCattcatttaccagt--------------gggcaaccataacaaaac--tcacaaactgggtggcttcaaacaacaggaatttattctgtctcagttctggagagcagaa-gtctggaagcaagatgacagtatggttgactcttacttggagactcagagagaggagttgtctcctgccttcctccca---gcttctgacagttg----------------ccatcagtccctggcgtccc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189272445 217 + 189454096 CTTCACTAGTTCattcatttaccagt--------------gggcaaccataacaaaac--tcacaaactgggtggcttcaaacaacaggaatttattctgtctcagttctggagagcagaa-gtctggaagcaagatgacagtatggttgactcttacttggagactcagagagaggaattgtctcctgccttcctccca---gcttctgacagttg----------------ccatcagtccctggcgtccc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178689959 215 + 178775436 CTTCACTAGTTCATTCATTTACCAGT--------------GGGCAACCATAACAAAac--tcacaaactgggtggcttcaaacaacaggaatttattctgTCTCAGTTCTGGAGAGCAGAA-GTCTGGAAGCAAGATGACAGTATGGTTGACTCCTACTTGGAGACTCAGAGAGAGGAGTTGTCTCCTGCCTTCCT--CA---GCTTCTGACAGTTG----------------CCATCAGTCCCTGGCGTCCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135623795 217 + 135778131 CTTCACTAGTTCATTCATATACCAGT--------------gggcaaccataacaaaac--tcaccaactaggtggcttcaaacaacaggaatgtattctgtctcagttctggagggcagaa-gtctggaagcaagatgacagcatggttgactcctacttggggactcagagagaggagccgtctcctgccttcctccca---gcttctgacagttg----------------ccatcagtccctggcatccc
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190733318 219 - 190850796 GTTCACTAGTTCattcatttaccagt--------------gagcaaccataacacagctgtcacaaaccgggtggcttaaaacaacaggaatttattctgtctcagttctgaaggtcagaa-gtctggaagcaagatgatagcgtggtcgatttctacttgaagactcagagagaggcgccatttcatgccttcctccca---gcttctggttggtg----------------ccatcaatccctggcatccc
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87902414 189 - 129401213 -TTCACCCGTGGGTCTGCTTACCCATGTGATTGAttcctagggtggccatgacaaaga---------------acctcaagacagcagaaatccattctct-tatgatctggaagccagaa-gt------gca----------------------cattcaaaagctcagggaga--agttgtctcatgtccctctcctagctgctgctgctgcttg----------------ctggccatccctagaattcc
i mm10.chr8                C 0 I 1730
e canFam3.chr16             18171591 3872 -  59632846 I

a score=3646729.000000
s hg38.chr4_KI270925v1_alt    506604 1413 +    555799  
s panTro4.chr4             193226603 1413 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198300986 1424 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113970242 1362 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183879511 1460 + 184069350  
i rheMac3.chr5             C 0 I 57
s macFas5.chr5             189272662 1407 + 189454096  
i macFas5.chr5             C 0 I 57
s papAnu2.chr5             178690174 1418 + 178775436  
i papAnu2.chr5             C 0 I 57
s chlSab2.chr7             135624012 1420 + 135778131  
i chlSab2.chr7             C 0 I 17
s calJac3.chr3             190733537 1395 - 190850796  
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87902603 1730 - 129401213 I
e canFam3.chr16             18171591 3872 -  59632846 I

a score=5950.000000
s hg38.chr4_KI270925v1_alt    508017 21 +    555799 atatatctctctatatatatC----
s panTro4.chr4             193228016 21 + 193495092 ATATATCTCTCTATATATATC----
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198302410 19 + 198332218 ATATA--TCTCTATATATAGC----
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113971604 19 + 115148730 atata--tctgtatatatatc----
i nomLeu3.chr7b            C 0 C 0
s chlSab2.chr7             135625449 11 + 135778131 tcaca--cctgta------------
i chlSab2.chr7             I 17 I 1
s calJac3.chr3             190734932 23 - 190850796 --ATATCTCTCTATATATGTATACC
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87902603 1730 - 129401213 I
e canFam3.chr16             18171591 3872 -  59632846 I
e papAnu2.chr5             178691592 57 + 178775436 I
e macFas5.chr5             189274069 57 + 189454096 I
e rheMac3.chr5             183880971 57 + 184069350 I

a score=1000.000000
s hg38.chr4_KI270925v1_alt    508038 1 +    555799 C
s panTro4.chr4             193228037 1 + 193495092 C
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198302429 1 + 198332218 C
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113971623 1 + 115148730 c
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190734955 1 - 190850796 C
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87902603 1730 - 129401213 I
e canFam3.chr16             18171591 3872 -  59632846 I
e chlSab2.chr7             135625460 1 + 135778131 I
e papAnu2.chr5             178691592 57 + 178775436 I
e macFas5.chr5             189274069 57 + 189454096 I
e rheMac3.chr5             183880971 57 + 184069350 I

a score=355087.000000
s hg38.chr4_KI270925v1_alt    508039 129 +    555799 ATCCA-CTGGTTTAAAAAGATGACAAAAGGTGACCA-AAAAATGTCATCCTTAGTTTGGACTCAAAGTGACAAAAATAGATGTTTTTCATGACAACATCTGTACAGTTGACACGCTCTGGAGTTgggttta
s panTro4.chr4             193228038 129 + 193495092 ATCCA-CTGGTTTAAAAAGATGACAAAAGGTGACCA-AAAAATGTCATCCTTAGTTTGGACTCAAAGTGACAAAAATAGATGTTTTTCATGACAACATCTGTACAGTTGACACACTCTGGAGTTgggttta
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198302430 129 + 198332218 ATcca-ctggtttaaaaagatgacaaaaggtaacca-aaaaatgtcatccttagtttggactcaaagtgacaaaaatagatgtttttcatgacaatatctatacagttgttatactctggagttgggttta
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113971624 129 + 115148730 atcca-ctagtttaaaaagatgacaaaaggtgacca-aaaaatgtcatccttagtttggactcagagtgacaaaaataaatgtttttcatgacaacatctacacagttgacacactctggagttgggttta
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183881028 128 + 184069350 ATCCA-CT-GTTTAAAAAAATGACAAAAGATGACCC-AAAAATGCCATtcttagtttggactcagagtgacaaaaatagatgattttcatgacaataactacacagttgacacactctggagttgggttta
i rheMac3.chr5             I 57 C 0
s macFas5.chr5             189274126 128 + 189454096 ATCCA-CT-GTTTAAAAAAATGACAAAAGATGACCC-AAAAATGCCATtcttagtttggactcagagtgacaaaaatagatgattttcatgacaataactacacagttgacacactctggagttgggttta
i macFas5.chr5             I 57 C 0
s papAnu2.chr5             178691649 128 + 178775436 atcca-ct-gtttaaaaagatgacaaaagatgaccc-aaaaaTGCCATTCTTAGTTTGGACTCAGAGTGACAAAAATAGATGATTTTCATGACAATAACTACACAGTTGACACACTCTGGAGTTGGGTTTA
i papAnu2.chr5             I 57 C 0
s chlSab2.chr7             135625461 129 + 135778131 ttccagat-gtttaaaaagatgacaaaagaTGACCA-AAAAATGCCATTCTTAGTTTGGACTTAGAGTGATAAAAACAGATGATTTTCATGACAATGACTACACAGTTGACACACTCTGGAGTTgggttta
i chlSab2.chr7             I 1 C 0
s calJac3.chr3             190734956 128 - 190850796 ATCCA-TTGGTTTAAAA--ATGACAAAAGTTGACCACAAAAACGTTATTTTTAGTTTGGACTCACAGTAACAAAAATAGATGTTTTTCATGACAATATCGATATAGTTGACACACTCAggagttgggtttt
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87902603 1730 - 129401213 I
e canFam3.chr16             18171591 3872 -  59632846 I

a score=1806284.000000
s hg38.chr4_KI270925v1_alt    508168 567 +    555799  
s panTro4.chr4             193228167 566 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198302559 578 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113971753 570 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183881156 582 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189274254 582 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178691777 582 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135625590 577 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190735084 594 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             41457930 536 +  59632846  
i canFam3.chr16            n 3872 I 303
e mm10.chr8                 87902603 1730 - 129401213 I

a score=555116.000000
s hg38.chr4_KI270925v1_alt    508735 199 +    555799 TCAAAGACACAACA-GGTTCTGAAGAGTGG-CCAGAAGGCGAGGATTggccaagcgtggtggctcgcacctgtaattccagcagtttgggaggccaaggcaagtggattgcttgagcccagcagttcaagaccagcccaggcaacatagcaaaaccccatctctataaaaTTAAAAATTAAAAATGAAAAAAATAGGAGGT
s panTro4.chr4             193228733 199 + 193495092 tcaaagacacaaca-ggttctgaagagtgg-ccagaaggcgaggattggccaagcgtggtggctcgcacctgtaattccagcagtttgggaggccaaggcaggtggattgcttgagcccagcagttcaagaccagcccaggcaacatagcaaaaccccatctctataaaattaaaaattaAAAAtgaaaaaaacaggaggt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198303137 200 + 198332218 tcaaagacacaacatggttctgaagagtgg-ccagaaggcgaggatTggccaggcgtggtggctcgcacctgtaattccagcactttgggaggccaaggcaggtggattgcttgagcccaggagttcaagaccagctcaggcaacatagcaaaaccccatctctataaaattaaaaatgaaaaattaaaaaaaTAGGAGGT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113972323 198 + 115148730 tcaaagacacaaga-ggttctgaagagtgg-ccagaaggcaaggattggctgggcatggtggctcacacctataattccagcactttgggaggccaaggcaggtggaatgcctgagcccaggagttcaagaccagcccaggcaacatagcaaaaccccatctctataaaattaaaaatgaaaaatt-aaaaaataggaggt
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183881738 198 + 184069350 TCAAAGACACGACA-GGTTCTGAAGAGTGG-CCAGAAGGCGAGGATTggctgggcgtggtggctaacacctgtaattccagcactttgggaggccaaggtaggtggattgcttgagcccaggagtttaagaccagcccaggccacatagtaaaaccccatctctataaaaTTAAAAATTAAAAATCTAAAAAA-AGGAGGT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189274836 198 + 189454096 TCAAAGACACGACA-GGTTCTGAAGAGTGG-CCAGAAGGCGAGGATTggctgggcgtggtggctaacacctgtaattccagcactttgggaggccaaggtaggtggattgcttgagcccaggagtttaagaccagcccaggcaacatagtaaaaccccatctctataaaaTTAAAAATTAAAAATCTAAAAAA-AGGAGGT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178692359 198 + 178775436 TCAAAGACACGACA-GGTTCTGAAGAGTGG-CCAGAAGGCGaggattggctgggtgtggtggctcacacctgtaattccagcactttgggaggccaaggtaggcggattgcttgagcccaggagtttaagaccagcccagtcaacatagcaaaaccccatctctataaaattaaaaattaaaaatctaaaaaa-aggAGGT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135626167 198 + 135778131 TCAAAGACACAACA-GGTTCTGAAGAATGG-CCAGAAGGCAAGGATTggctgggcgtggtggctcacacctgtaattccagcactttgggaggccaaggtaggtggattgcttgagcccaggagttcaagaccatcccaggcaacagagcaaaaccccatctctataaaaTTAAAAATTTAAAATTTAAAAAA-AGGAGGT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190735678 193 - 190850796 TTGAAGACACAACG-GGTCCTGAAGAGTGGCCCACATGGTGAGGACTgacagggcataatgattcccaactataattccagcactttgggaggccaaagtgagtggactccttgag-ccaggagttcgagaccagcctgggcaacatagcaaaaccccatctctataaaattaaaaaTTTA------AGAAAACAGAAAGT
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87902603 1730 - 129401213 I
e canFam3.chr16             41458466 303 +  59632846 I

a score=61366.000000
s hg38.chr4_KI270925v1_alt    508934 19 +    555799 GAA-GATAGGGAAATAAGAG
s panTro4.chr4             193228932 19 + 193495092 gaa-gatagggaaataagag
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198303337 20 + 198332218 GAACGATAGAGAAATAAGAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113972521 19 + 115148730 gaa-gatagagaaataagag
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183881936 19 + 184069350 GAA-GATGGAGAAATaagag
i rheMac3.chr5             C 0 I 442
s macFas5.chr5             189275034 19 + 189454096 GAA-GATGGAGAAATAAGAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178692557 19 + 178775436 GAA-GATGGAGAAATAAGAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135626365 19 + 135778131 GAA-GATGGAGAAATAAGAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190735871 19 - 190850796 GAA-GATAGAGAAACAAGAG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             41458769 19 +  59632846 GGA-GTTGAGAAAATAAGGT
i canFam3.chr16            I 303 C 0
e mm10.chr8                 87902603 1730 - 129401213 I

a score=715326.000000
s hg38.chr4_KI270925v1_alt    508953 329 +    555799 AAACCAAACATttctaagca---gattagat------------------------------------------------------------------------------------gaaaagaaacccacatctgggcacaaac--ttcaacttcgggccaccaaaatt--aaaaaaaaaaaa-----gaccttaaaaatagccagagtaaaaa-gtttaccttcagtgaaataaccgttatatgaaaaaca-attttttccaacagtatcagtggatccagaaca-----aagcactagcctaaaat-tctgac-aga-agatagcatccatctcaagatgtttgctcag-caaactattgtgtcataa-ttaggac-aaaataaacacattttaggcaaacagaatctatgtttaatat-aatcagactcttgctaaa
s panTro4.chr4             193228951 331 + 193495092 aaaccaaacatttctaagca---gattagat------------------------------------------------------------------------------------gaaaagaaatccacatctgggcacaaac--ttcaacttcgggccaccaaaatt--aaaaaaaaaaaa--aaagaccttaaaaatagccagagtaaaaa-gtttaccttcaatgaaataaccgttatatgaaaaaca-attttttccaacagtatcagtggatccagaaca-----aagcactagcctaaaat-tctgac-aga-agatagcatccatctcaagatgtttgctcag-caaactattgtgtcataa-ttagg-c-aaaataaacgcattttaggcaaacagaatctatgtttaatat-aatcggactcttgctaaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198303357 339 + 198332218 AAACCAAACATTTCTAAGCACAGGATTAGat------------------------------------------------------------------------------------gaaaagaaacccacatctgggcacaaacctttcaacttcaggccaccaaaatt--agaaaaaaaaaa-----ggcctcaaaaatagccagagtaaaaaggtttaccttcaatgaaataacagttatatgaaaaaca-attttttccaacagtatcagtggatccagaaca-----aagcactagcctaaaatgtctgacaaga-agatagcatccatctcaagatgtttgctcag-caaactattgtgtcataagttaggacaaaaacaaacacattttaggcaaacagaatctatgtttaatat-aatcagactcttgctaaa
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113972540 330 + 115148730 aaaccaaacatttctaa------gattagat------------------------------------------------------------------------------------gaaaggaaacccacatctgggcacaaac--ttcaacttcaggccaccaaaatt--aaaaaaaaaaaaaaaaagaccttaaaaatagccagagtaaaaa-gtttaccttcaatgaaataaccattatatgaaaaaca-a-tttttccaacagtatcagtggatccagaaca-----aagcattagcctaaaat-tctgac-aga-agatagcatccatctcaagatgtttgctcag-caaactattgtatcatga-ttaggac-aaaataaactcattttaggcaaacagaatctatgtataatat-aatcagactcttgctaaa
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189275053 334 + 189454096 AAACCAAACATtcctaagca---gattagat------------------------------------------------------------------------------------gaaaagaaacccacatctaggcacaaac--ttcaactccaggccaccaaaatt--aaaaaaaaataaataaagatcttaaaaacagccagagtaaaaa-ctttaccttccatgaaatagcagttatatgaaaaaca-atttttcccaacagtatcagtggatccggaaca-----aagccctagcctaaaat-tctgac-aga-agacagcatccctctcaagatgtctgctcag-caaactattgcgtcataa-ttaggac-acaataaatgcattttaggcaagcagaatctgtgtttaatat-aatcagactcttgttaaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178692576 333 + 178775436 AAACCAAACATTCCTAAGCA---GATTAGAT------------------------------------------------------------------------------------GAAAAGAAACTCACATCTAGGCACAAAC--TTCAACTCCAGgccaccaaaatt---aaaaaaaataaataaagatcttaaaaacagccagagtaaaaa-CTTTACCTTCCATGAAATAGCAGTtatatgaaaaaca-atttttcccAACAGTATCAGTGGATCCGGAACA-----AAGCCCTAGCCTAAAAT-TCTGAC-AGA-AGACAGCATCCCTCTCAAGATGTTTGCTCAG-CAAACTATTGCGTCATAA-TTAGGAC-ACAATAAATGCATTTTAGGCAAGCAGAATCTGTGTTTAATAT-AATCAGACTCTTGCTAAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135626384 337 + 135778131 AAACCAAACATtcctgagca---gattagat------------------------------------------------------------------------------------gaaaagaaacccacatctaggcacaaac--ttcaactccaggctaccaaaattaaaaagaaaaaaaaataaagatcttaaaaacagccagagtaaaaa-ctttaccttccacgaaatagcagttatatgaaaaaca-atttttcccaacagtatcagtggatccggaaca-----aagccctagcctaaaat-tctgac-aga-agatagcatccctctcaagatgtttgctcag-caaactattgcgtcataa-ttaggac-acaataaatgcattttaggcaagcagaatctgtgtttaatataaatcgaactcttgctaaa
i chlSab2.chr7             C 0 I 2
s calJac3.chr3             190735890 318 - 190850796 AAGCCAAGCATTTCTCTGCA---GATACGAT------------------------------------------------------------------------------------GAGAATaaacccatatctagaccgaaac--ttcaattccaagccaccaaaatt--ttaagaaaaa-------gaccttaaaaatacacagagtaaaaa-gtttaacttcaatgaaataac----atacgaaaaaca-attttttgtaacaataacaatggacacagaaca-----aagcactaccctaaaat-tctgac-aga-agatagtgtccatctcaagttgtttgctcag-caaactattatgtcataa-ttagagc-aaaataaatgcattttaggcaaacagaatctatgttt------agtcaggctcttgctaaa
i calJac3.chr3             C 0 C 0
s canFam3.chr16             41458788 359 +  59632846 AAGGCAAACATTCCCAAGTA---GAATAgaggaaggaaagagagaaggaagggagggaagggggggcggggggagggagggaggaatgaaggaaagaagggaggaagaaggaggagaaaaaaggaacacatctaggcacgtag--tgaaattgcaa------aatact--gaagaaaaggaa----aaatcctaaaaggagccagaa-aaaaa-aattatctacaatggaataacaatttcgtggaaaacacatttttttcaagagcagtagtggatccagaacacaatggaacactagcctcaaat-tgctac-aaacaaataatgaccatctcaagttgtttactcagccaaattacttttcaataa-tcagggc-aaaa---------------------------------------------------------
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87902603 1730 - 129401213 I
e rheMac3.chr5             183881955 442 + 184069350 I

a score=16249.000000
s hg38.chr4_KI270925v1_alt    509282 12 +    555799 agaattgctaaa-
s panTro4.chr4             193229282 12 + 193495092 agaattgctaaa-
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198303696 12 + 198332218 agaattgctaaa-
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113972870 12 + 115148730 agaattgctaaa-
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189275387 12 + 189454096 ggaattactaaa-
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178692909 12 + 178775436 GGAATTACTGAA-
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190736208 12 - 190850796 ggaattgctata-
i calJac3.chr3             C 0 C 0
s canFam3.chr16             41459147  5 +  59632846 --------taaat
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87902603 1730 - 129401213 I
e chlSab2.chr7             135626721  2 + 135778131 I
e rheMac3.chr5             183881955 442 + 184069350 I

a score=3820.000000
s hg38.chr4_KI270925v1_alt    509294 4 +    555799 ggaa
s panTro4.chr4             193229294 4 + 193495092 ggaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198303708 4 + 198332218 ggaa
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113972882 4 + 115148730 ggaa
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189275399 4 + 189454096 ggaa
i macFas5.chr5             C 0 I 939
e mm10.chr8                 87902603 1730 - 129401213 I
e canFam3.chr16             41459152 0 +  59632846 C
e calJac3.chr3             190736220 0 - 190850796 C
e chlSab2.chr7             135626721 2 + 135778131 I
e papAnu2.chr5             178692921 0 + 178775436 C
e rheMac3.chr5             183881955 442 + 184069350 I

a score=50253.000000
s hg38.chr4_KI270925v1_alt    509298 109 +    555799 ggcc-gggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggtggatcacgaggtcaggagatcgagaccatct-tggctaaca-cggtgaaacccc
s panTro4.chr4             193229298 109 + 193495092 ggcc-gggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggtggatcacgaggtcaggagattgagaccatcc-tggctaaca-cggtgaaacccc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198303712 111 + 198332218 ggccagggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggaggatcatgaggtcaggagatggagaccatct-tggctaacaccagtgaaaccac
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113972886 109 + 115148730 ggcc-aggcacggtggctcacacctgtaatcccagcactttgggaggccgaggtgggcggatcacaaggtcaggagatcgagaccatct-tggctaaca-cggtgaaacccc
i nomLeu3.chr7b            C 0 C 0
s canFam3.chr16             41459152  45 +  59632846 ----------------------------------gcattttgggcaaacaaaa--------------------------------atctgtgtttaaca-taatcaaaccct
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87902603 1730 - 129401213 I
e calJac3.chr3             190736220   0 - 190850796 C
e chlSab2.chr7             135626721   2 + 135778131 I
e papAnu2.chr5             178692921   0 + 178775436 C
e macFas5.chr5             189275403 939 + 189454096 I
e rheMac3.chr5             183881955 442 + 184069350 I

a score=62499.000000
s hg38.chr4_KI270925v1_alt    509407 136 +    555799 gtc-tctaccaaaaatacaaaaatttagccgggcgcggtggcg-ggcgcctgtggtcccagctactcgggaggctgaggcaggagaatggcgggaaccc--gggaggcggagcttgcagtgagccgagatcgcgcccctg
s panTro4.chr4             193229407 136 + 193495092 gtc-tctaccaaaaatacaaaaatttagccgggcgcggtggcg-ggcgcatgtagtcccagctactcgggaggctgaggcaggagaatggcgggaaccc--gggaggcggagcttgcagtgagctgagatggcgccaccg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198303823 140 + 198332218 gtcttctaccaaaaatacaaaaaattagccgggcgtggtggcgaggtgtctgtagtcccagctactggggaggctgaggcaggagaatggcgtgaaccccgggaaggcggagcttgcagtgagctgagatcgcgccaccg
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113972995 136 + 115148730 atc-tctactaaaaatacagaaatttagctggtctcagtggcg-ggtgcctgtagtcccagctacttgggaggctgaggcaggagaatggcatgaaccc--gggaggcagaacttgcagtgagctgagattgcaccactg
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87902603 1730 - 129401213 I
e canFam3.chr16             41459197   0 +  59632846 C
e calJac3.chr3             190736220   0 - 190850796 C
e chlSab2.chr7             135626721   2 + 135778131 I
e papAnu2.chr5             178692921   0 + 178775436 C
e macFas5.chr5             189275403 939 + 189454096 I
e rheMac3.chr5             183881955 442 + 184069350 I

a score=15281.000000
s hg38.chr4_KI270925v1_alt    509543 68 +    555799 cactccagcctgggcgacagagcgagactcc-gtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
s panTro4.chr4             193229543 64 + 193495092 cactccagcctgggcgacagagcaagactcc-gtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaa----
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198303963 55 + 198332218 cactccagcctgggcgacagag--agactcc-gtctcaaaaaaaaaaaaaaaaaaaaa-----------
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113973131 57 + 115148730 cactccagccggggtgacagagcgagactcctatctcaaaaaaaaaaaaaaaaaaag------------
i nomLeu3.chr7b            C 0 C 0
s canFam3.chr16             41459197  4 +  59632846 cact-----------------------------------------------------------------
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87902603 1730 - 129401213 I
e calJac3.chr3             190736220  0 - 190850796 C
e chlSab2.chr7             135626721  2 + 135778131 I
e papAnu2.chr5             178692921  0 + 178775436 C
e macFas5.chr5             189275403 939 + 189454096 I
e rheMac3.chr5             183881955 442 + 184069350 I

a score=10204.000000
s hg38.chr4_KI270925v1_alt    509611 15 +    555799 aaaagaattgctaat
s panTro4.chr4             193229607 11 + 193495092 ----gaattgctaat
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198304018 11 + 198332218 ----aaattgctaat
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113973188 11 + 115148730 ----gaattgctaat
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183882397 15 + 184069350 aaaggaattactaaa
i rheMac3.chr5             I 442 C 0
s canFam3.chr16             41459201 14 +  59632846 -aaaggattgctaaa
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87902603 1730 - 129401213 I
e calJac3.chr3             190736220  0 - 190850796 C
e chlSab2.chr7             135626721  2 + 135778131 I
e papAnu2.chr5             178692921  0 + 178775436 C
e macFas5.chr5             189275403 939 + 189454096 I

a score=608041.000000
s hg38.chr4_KI270925v1_alt    509626 242 +    555799 ggaaatacttcagata-gagtaaaatgattccataaaaagggtctgggatg-aaaaaaggaacaataaaccaagaaactggta----taaatgAA------------ATAATAAAAACACTGTAAATATGTG----------GAGGCAGAATCTAAATAACACACAAAAATACAATGTAAAGCAGGTGGCAATTGATGAGAATTAAGAT-ACAGCATTGCTAGGAAGGAGAAC--AGATTCATTTT--GGATTTtattaagattaag-agcagcca
s panTro4.chr4             193229618 242 + 193495092 ggaaatacttcagata-gagtaaaatgattccataaaaagggtctgggatg-aaaaaaggaacaataaaccaagaaactggta----taaatgaa------------ataataaaaacactgtaaatatgtg----------gaggcagaatctaaataacacacaaaaatacaatgtaaagcaggaggcaattgatgagaattaagat-acagcattgctaggaaggagaac--agattcatttt--ggattttattaagattaag-agcagcca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198304029 245 + 198332218 ggaaatacttcagata-gagtaaaatgattccataaaaagggtctgggatg-aaaaaacgaacaataaaccaagaaactggta----taaatgaa------------ataataaaaacactgtaaatatgtg----------gaggcggaatctaaataacacacaaaaatacaatgtaaagcagg-ggcaattgatgagaattaagatcacagcattgctaggaaggagaac--agattcattttggggattttattaagattaagaagcaacca
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113973199 242 + 115148730 ggaaatacttcagata-gagtaaaatgattccataaaaagggtctgggatg-aaaaaaggaacaatgagcaaagaaactggta----taaatgAA------------ATAATAAAAACACTGTAAACATGTG----------GAGGCAGAATCTAAATAATGCACAAAAATACAATGTAAAGCAGGAGGCAATTGATGAGAATTAAGAT-ACAGCATTGCTAGGAAGGAGAAC--AGATTCATTTT--GGATTTtattaagattaag-agcaacca
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183882412 244 + 184069350 ggaaatacttcagatacaagtaaaatgattccataaaaaggatctgggatgaaaaaaaggaacaataaacaaggaaactggta----taaatgAA------------ATAATAAAAACAGTGTAAATATGTG----------GAGGCAGAATCTAAATAATGCACAAAAATACAATGTGAAGCAGGAGGCAATTGATGGGAATTAAGAT-ACAACATTGCTAGGGAGGAGAAC--AGATTCATTTT--GGATTTtattaagattaag-agcaacca
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178692921 238 + 178775436 GGAAATACTTCAGATACAAGTAAAATGATTCCATAAAAAGGATCTGGgatgaaaaaaaggaacaataaaCAAGGAAACtggta----taaatgaa------------ataataaaaacagtgtaAATATGTG----------GAGGCAGAATCTAAATAATGCACAAAAATACAATGTGAAGCAGGAGGCAATTGATGAGAATTAAGAT-ACAACATTGCTAGGGAGGAGAAC--AGATTCATTTT--GGATTTT------ATTAAG-AGCAACCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135626723 238 + 135778131 ggaaatacttcagatacaagtaaaatgattccataaaaaggatctgggatgaaaaaaaggaacaataaacaaggaaactggta----taaatgAA------------ATAATAAAAACAGTGTAAATATGTG----------Gaggcagaatctaaataatgcacaaaaatacaatgtgaagcaggaggcaattgatgagaattaagac-acaacattgctagggaggagaac--agattcatttt--ggatttt------attaag-agcaacca
i chlSab2.chr7             I 2 C 0
s calJac3.chr3             190736220 249 - 190850796 ggaaatacttcagataggagtaaaatgatttcataaaaagg-cctgggatg-aaaaaaggaaaagtaaacaaagaaactggta----TCAACAAA------------ATAAT-AAAACAC--TAAATAAGTGAGAAAAAAACAAAACAGCATCTAAATAATGTACAAAAACACAATGTAAGACAGGAGGCAATTGATGAGAATTAGGAT-ACATCATTGCTAGGGAGGAGAAC--AGATTTATTTT--GGATTTtgtcaagattaag-agcaacca
i calJac3.chr3             C 0 C 0
s canFam3.chr16             41459215 262 +  59632846 gaaaatacatctgtaagaagtgaaataattccagggaaaaggtctagggtg-aaataagtgatggtaaac----aaactggtaaatctaaacaaacattgaatatataagataatagtgttgtaaatatatgaaaaa-----aagatggaatctaaataatgcacaaaaatactatatatgacaagaagagaatgatcagaattaggat-attgcattgctagggaggagaacagagattaatttt--ggattttgttaaaattaag-agcaacca
i canFam3.chr16            C 0 I 157
e mm10.chr8                 87902603 1730 - 129401213 I
e macFas5.chr5             189275403 939 + 189454096 I

a score=177598.000000
s hg38.chr4_KI270925v1_alt    509868 79 +    555799 ca-gaatgattt---aaaaaagggtttatggcttccaaaccagtagagagggtaaaaataattttaaaatcaaaattcagtca
s panTro4.chr4             193229860 79 + 193495092 ca-gaatgactt---aaaaaagggtttatggcttccaaaccagtagagagggtaaaaataattttaaaatcaaaattcagtca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198304274 83 + 198332218 taggaatgattcctaaaaaaagggtttatggcttccaaaccagtagagagggtaaaaataattttaaaatcaaaattcagtca
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113973441 79 + 115148730 ca-gaatgatta---gaaaaagagtttatggcttccaaaccagtagagaaggtaaaaatatttttaaaatcaaaattcagtca
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183882656 79 + 184069350 ta-gaatgatta---gaaaaaggatttatggcttccaaatgagtagagagggtaaaaataattttaaaatcaaaatttagtca
i rheMac3.chr5             C 0 I 348
s papAnu2.chr5             178693159 79 + 178775436 CA-GAATGATTA---GAAAAAGGATTTATGGCTTCCAAATGAGTAGAGagggtaaaaataattttaaaatcaaaatttagtca
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135626961 79 + 135778131 ta-gaatgatta---gaaaaaggatttatggcttccaaacgagtagagagggtaaaaataattttaaaatcaaaatttagtca
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190736469 79 - 190850796 ta-gaatgatta---ggaaaagggtttatggcttccaaaccagcagagagagtaaaaataattttaaaatcaaaattcagtca
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87902603 1730 - 129401213 I
e canFam3.chr16             41459477 157 +  59632846 I
e macFas5.chr5             189275403 939 + 189454096 I

a score=1911.000000
s hg38.chr4_KI270925v1_alt    509947 1 +    555799 a
s panTro4.chr4             193229939 1 + 193495092 a
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198304357 1 + 198332218 a
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113973520 1 + 115148730 a
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178693238 1 + 178775436 a
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135627040 1 + 135778131 a
i chlSab2.chr7             C 0 I 1
s calJac3.chr3             190736548 1 - 190850796 a
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87902603 1730 - 129401213 I
e canFam3.chr16             41459477 157 +  59632846 I
e macFas5.chr5             189275403 939 + 189454096 I
e rheMac3.chr5             183882735 348 + 184069350 I

a score=8096.000000
s hg38.chr4_KI270925v1_alt    509948 11 +    555799 aaaggagagaa
s panTro4.chr4             193229940 11 + 193495092 aaaggagagaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198304358 11 + 198332218 aaaggagagaa
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113973521 11 + 115148730 aaaggagagag
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189276342 10 + 189454096 -aagagggggg
i macFas5.chr5             I 939 C 0
s papAnu2.chr5             178693239  9 + 178775436 --aaaagagaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135627042 11 + 135778131 aaagagaaaga
i chlSab2.chr7             I 1 C 0
s calJac3.chr3             190736549  3 - 190850796 aaa--------
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87902603 1730 - 129401213 I
e canFam3.chr16             41459477 157 +  59632846 I
e rheMac3.chr5             183882735 348 + 184069350 I

a score=5783.000000
s hg38.chr4_KI270925v1_alt    509959 13 +    555799 agaaag--agagaaa
s panTro4.chr4             193229951  3 + 193495092 aga------------
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198304369 15 + 198332218 agaaagaaagagaga
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113973532 13 + 115148730 agagag--aaagaaa
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189276352 13 + 189454096 agggag--gagggag
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178693248 13 + 178775436 agaaag--aaagaag
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135627053 13 + 135778131 agaaag--aaagaaa
i chlSab2.chr7             C 0 I 217
s canFam3.chr16             41459634 13 +  59632846 ataaat--aaataaa
i canFam3.chr16            I 157 I 4
e mm10.chr8                 87902603 1730 - 129401213 I
e calJac3.chr3             190736552  0 - 190850796 C
e rheMac3.chr5             183882735 348 + 184069350 I

a score=22723.000000
s hg38.chr4_KI270925v1_alt    509972 17 +    555799 cagagaaagaaagaagg
s panTro4.chr4             193229954 15 + 193495092 --gagaaagaaagaagg
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198304384 17 + 198332218 gagagaaagaaagaagg
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113973545 17 + 115148730 aagaaagaaagagaaag
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189276365 17 + 189454096 ggagggaagaaggggaa
i macFas5.chr5             C 0 I 6
s papAnu2.chr5             178693261 17 + 178775436 gaacgaaagaaagaaag
i papAnu2.chr5             C 0 I 166
s calJac3.chr3             190736552 16 - 190850796 -agagaaagaaagaagg
i calJac3.chr3             C 0 C 0
s canFam3.chr16             41459651 17 +  59632846 taaaaaaaaaaaaaaag
i canFam3.chr16            I 4 C 0
e mm10.chr8                 87902603 1730 - 129401213 I
e chlSab2.chr7             135627066 217 + 135778131 I
e rheMac3.chr5             183882735 348 + 184069350 I

a score=-5829.000000
s hg38.chr4_KI270925v1_alt    509989 19 +    555799 a----------------------------aggaaggcaggcaggaag
s panTro4.chr4             193229969 19 + 193495092 a----------------------------aggcaggcaggcaggaag
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198304401 47 + 198332218 aaggaaggaaggaaggaaagaaggcaggcaggcaggcaggaaggaag
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113973562 19 + 115148730 a----------------------------aagagagaacGAAGGAAG
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189276388 10 + 189454096 ------------------------------------aaggaaggaa-
i macFas5.chr5             I 6 C 0
s papAnu2.chr5             178693444 19 + 178775436 a----------------------------aagaaggaaggaaggaag
i papAnu2.chr5             I 166 C 0
s calJac3.chr3             190736568  8 - 190850796 ------------------------------------aaggaagg---
i calJac3.chr3             C 0 C 0
s canFam3.chr16             41459668 20 +  59632846 ------------------------attaagagcaaccaggcaat---
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87902603 1730 - 129401213 I
e chlSab2.chr7             135627066 217 + 135778131 I
e rheMac3.chr5             183882735 348 + 184069350 I

a score=1880003.000000
s hg38.chr4_KI270925v1_alt    510008 652 +    555799  
s panTro4.chr4             193229988 652 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198304448 656 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113973581 652 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183883083 640 + 184069350  
i rheMac3.chr5             I 348 C 0
s macFas5.chr5             189276398 648 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178693463 645 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135627283 646 + 135778131  
i chlSab2.chr7             I 217 C 0
s calJac3.chr3             190736576 638 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             41459688 766 +  59632846  
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87902603 1730 - 129401213 I

a score=1999830.000000
s hg38.chr4_KI270925v1_alt    510660 714 +    555799  
s panTro4.chr4             193230640 712 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198305104 729 + 198332218  
i ponAbe2.chr4             C 0 M 828
s nomLeu3.chr7b            113974233 709 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183883723 721 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189277046 721 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178694108 730 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135627929 724 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190737214 744 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87904333 642 - 129401213  
i mm10.chr8                I 1730 I 8
s canFam3.chr16             41460454 668 +  59632846  
i canFam3.chr16            C 0 C 0

a score=101355.000000
s hg38.chr4_KI270925v1_alt    511374 49 +    555799 ATATGTGTGTGTCCACGCACCTGTCTGTGAGTAGATACACGGAGAGAAA
s panTro4.chr4             193231352 49 + 193495092 ATATGTGTGTGTCCACGCACCTGTCTGTGAGTAGATACACGGAGAGAAA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113974942 49 + 115148730 ATATGTGCATGTCCACGCACCTGTCTGTGAGTAGATACACGGAGAGAAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183884444 49 + 184069350 GTGTGTGTAAGCGTATGCACGTGCCTGTGAGAAGATATACGGAGAGAAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189277767 49 + 189454096 GTGTGTGTAAGCGTATGCACGTGCCTGTGAGAAGATATACGGAGAGAAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178694838 49 + 178775436 GTGTGTGTAAGCGTATGCATGTGCCTGTGAGAAAATACATGGAGAGAAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135628653 49 + 135778131 GTGTGTATAAGCGTATGCACGTGCCTGTGAGAAGATACACGGAGAGAAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190737958 47 - 190850796 GTAGGTGCATGTGCACACACGTGTC--TGAGTAAACACTCAGAGAGAAA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87904983 35 - 129401213 --------------ATCTACGTGTATCTCAATAGATGTGTAGACAGAAA
i mm10.chr8                I 8 I 2948
s canFam3.chr16             41461122 45 +  59632846 ----gtgtgtgtgtgtatgtgtgtatgtTGGTACATATATGGACAGAGA
i canFam3.chr16            C 0 C 0
e ponAbe2.chr4             198305833 828 + 198332218 M

a score=112764.000000
s hg38.chr4_KI270925v1_alt    511423 52 +    555799 ------CAATaagatgtctgacatgacgttcacctaatttaataatcagaatttctaa
s panTro4.chr4             193231401 52 + 193495092 ------CAATaagatgtttgacatgacgttcacctaatttaataatcagaatttctaa
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113974991 52 + 115148730 ------CAATaagatgtttgacatgacgttcacctaatttcataatgagaatttctaa
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183884493 52 + 184069350 ------CAATaagatgtttgacatgacgttcacctaatttcataaggagaatttctaa
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189277816 52 + 189454096 ------CAATaagatgtttgacatgacgttcacctaatttcataaggagaatttctaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178694887 52 + 178775436 ------CAATAAGATGTTTGACATGACGTTCACCGAATTTCATAAGGAGAATTTCTAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135628702 47 + 135778131 ------CA-----ATGTTTGACATGACGTTCACCTAATTTCATAAGGAGAATTTCTGA
i chlSab2.chr7             C 0 I 5
s calJac3.chr3             190738005 51 - 190850796 -------AATaagatgtttgacacattgttcacctaatttcataatgagaatttctaa
i calJac3.chr3             C 0 C 0
s canFam3.chr16             41461167 53 +  59632846 CAGAGAGGGAGAGAAACTGGGCATGATGTTCACC-----TTATGATTATTATTTGGAA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87905018 2948 - 129401213 I
e ponAbe2.chr4             198305833 828 + 198332218 M

a score=25852.000000
s hg38.chr4_KI270925v1_alt    511475 13 +    555799 gtagtag-atttta
s panTro4.chr4             193231453 13 + 193495092 gtagtag-atttta
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113975043 13 + 115148730 gtagtag-atttta
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183884545 13 + 184069350 gtagtag-atttta
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189277868 13 + 189454096 gtagtag-atttta
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178694939 13 + 178775436 GTAGTAG-ATTTTA
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190738056 12 - 190850796 gcagtag--tttta
i calJac3.chr3             C 0 C 0
s canFam3.chr16             41461220 14 +  59632846 ATAGTAGGATTTTA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87905018 2948 - 129401213 I
e chlSab2.chr7             135628749  5 + 135778131 I
e ponAbe2.chr4             198305833 828 + 198332218 M

a score=42235.000000
s hg38.chr4_KI270925v1_alt    511488 16 +    555799 gttggtatctgttttc
s panTro4.chr4             193231466 16 + 193495092 gatggtatctgttttc
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113975056 16 + 115148730 gatggtatctgttttc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183884558 16 + 184069350 gatggtatctgttttc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189277881 16 + 189454096 gatggcatctgttttc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178694952 16 + 178775436 GATGGTATCTGTTTTC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135628754 16 + 135778131 GATGGTATCTGTTTTC
i chlSab2.chr7             I 5 C 0
s calJac3.chr3             190738068 16 - 190850796 aatagtatttgttttt
i calJac3.chr3             C 0 C 0
s canFam3.chr16             41461234 16 +  59632846 GGTGAAATTTGTTCTC
i canFam3.chr16            C 0 n 0
e mm10.chr8                 87905018 2948 - 129401213 I
e ponAbe2.chr4             198305833 828 + 198332218 M

a score=26886.000000
s hg38.chr4_KI270925v1_alt    511504 11 +    555799 ACTTTCACttt
s panTro4.chr4             193231482 11 + 193495092 ACTTTCACttt
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113975072 11 + 115148730 ACTTTCACttt
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183884574 11 + 184069350 actttcacttc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189277897 11 + 189454096 actttcacttc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178694968 11 + 178775436 ACTTTCacttc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135628770 11 + 135778131 ACTTTCACTTC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190738084 11 - 190850796 actttcacttt
i calJac3.chr3             C 0 I 22
e mm10.chr8                 87905018 2948 - 129401213 I
e canFam3.chr16             41461250  0 +  59632846 I
e ponAbe2.chr4             198305833 828 + 198332218 M

a score=424569.000000
s hg38.chr4_KI270925v1_alt    511515 289 +    555799 g---------ttttttttttttgagccggagtctcgctgtgtcgcccaggctggagtgcagtggtgccatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctggagaattctcct-----gctgggaccacaggtgcacgccactgccccgggctaattttttgtatatttagtagacatggggtttcatcgtgtttgccaggatggtctcaatctcctgacctcgtgatccacctgcctcggcctcccaaagtgctggaattacaggtgtgagccaccgcaccc----------------
s panTro4.chr4             193231493 289 + 193495092 g---------tttttttattttgagacggagtctcgctctgtcgcccaggctggagtgcagtggtgccatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctggacaattctcct-----gctgggaccacaggcgcatgccactgccccgggctaattttttgtatatttagtagacatggggtttcatcgtgtttgccaggatgatctcaatctcctgacctcgtgatccacccgcctcggcctcccaaagtgctggaattacaggtgtgagccaccgcactc----------------
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113975083 290 + 115148730 g---------tttttttattttgagatggagtctcgctctgtcgcccagcctggattgcagtggtgcgatctcggctcactgcaaactctgcctcccgggttcacaccattctcccgcct----cagcctcccgagtagctgggactacaggcgcccgccaccacgcccggctaattttttgtatttttagtacagacggggtttcaccatgttagcagggatgatctcgatctcctgacctcatgatccacctgcctcggcctcccaaagtgctggaattacaggcgtgagccactgcaccc----------------
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183884585 297 + 184069350 gg------ttttttttttttttgagacagagtctcgctctgtcacccaggctgtagtgcagtggcgcgatctcggctcattgcaagctccacttctggtgttcacgccattctcctgcct----cagtctcctgagtagctgggattacaggcgtgtgccaccatgcctggctaatttttgtattttttagtagagacagggtttcatcatgttggtcag------------ctgctgaccccgtgatccgcctgccttggcctcctaaagtgctgggattacaggcgtgagccaccatgtacagccttgaatttttta
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189277908 298 + 189454096 gg-----tttttttttttttttgagacagagtctcgctctgtcacccaggctgtagtgcagtggcgcgatctcggctcattgcaagctccacttctggggttcacgccattctcctgcct----cagtctcctgagtagctgggattacaggcgtgtgccaccatgcctggctaatttttgtattttttagtagagacagggtttcatcatgttggccag------------ctgctgaccccgtgatccgcctgccttggcctcctaaagtgctgggattacaggcgtgagccaccatgtacagccttgaatttttta
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178694979 315 + 178775436 gggtttttttttttttttttttgagacagagtctcgctctgtcgcccaggctggagtgcagtggcgcgatctcggctcattgcaagctccacttctggggttcacaccattctcctgcct----cagtctcctgagtagctgggattacaggcgtgtgccaccacgcccggctaacttttgtattttttagtagagacagggtttcatcatgttggccaggctggtcttggtctgctgaccccgtgatccgcctgccttggcctcctaaagtgctgggattacaggcgtgagccaccatgtacagccttgaattttttt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135628781 307 + 135778131 GG--------ttttttttttttgagacagagtctcgctctgtcgcccaggctggagtgcagtggtgcgatctcggctcattgcaagctccacttctggggttcacgccattctcctgtct----cagtctcctgagtagctggtattacaggcgtgtgccaccatgcccggctaatttttgtattttttagtagagacagggtttcatcatgttggccaggctggtcttgatctgctgaccccgtgatccgcctgccttggcctcctaaagtgctgggattacgggcgtgagccaccatgtacagccTTGAATTTTTTT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87905018 2948 - 129401213 I
e canFam3.chr16             41461250   0 +  59632846 I
e calJac3.chr3             190738095  22 - 190850796 I
e ponAbe2.chr4             198305833 828 + 198332218 M

a score=380946.000000
s hg38.chr4_KI270925v1_alt    511804 157 +    555799 AAATGAAAATGCACCTTAATAAAATTTTA-aaaaataattcatgcttattgtagaacatttagaaaatgttaaaaagtataaaagagcaaaataggtatcacggctaattctatgactgttaacattttagtgagttttcattacaatcAACTTGAAT
s panTro4.chr4             193231782 156 + 193495092 AAATGAAAATGCACCTTAATAAAATTTTA-aaaaataattcatg-ttattgtagaacatttagaaaatgttaaaaagtataaaagagcaaaataggtatcacggctaattctatgactgttaacattttagtgagttctcattacaatcAACTTGAAT
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113975373 157 + 115148730 AAATGAGAATGCACCTTAATAAAATtttt-aaaaataattcatgcttattgtagaacacttataaaatattaaaaagtataaaagagcaaaataagtatcattgctaattttatcactgttaacattttagtgagctttcattacaatcAACTTGAAT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183884882 156 + 184069350 aaatgagaatgcaccttaataaaaTTTCT--TAAATAATTCATGCTTATTATAGAACATTTAGAAAACATTAAAAAGTATAAAAGAGCAAAATAAATATAACTGCTGATTCTTTCACTGTTAACATTTTAGTGTGTTTTCATTACAATCCACGTGCAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189278206 156 + 189454096 aaatgagaatgcaccttaataaaaTTTCT--TAAATAATTCATGCTTATTATAGAACATTTAGAAAACATTAAAAAGTATAAAAGAGCAAAATAAATATAACTGCTGATTCTTTCACTGTTAACATTTTAGTGTGTTTTCATTACAATCCACGTGCAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178695294 155 + 178775436 aaatgagaatgcaccttaataaaattttt--taaataattcatgctTATTATAGAACattgagaaaacattaaaaagtataaaaaagcaaaacaaatataaCTGCTGATTCtttcactgttaacattttagtgTG-TTTCATTACAATCCATGTGCAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135629088 156 + 135778131 AAATGAGAATGCACCTTAATAAAATTTTT--TaaataattcatgcttattatagaacatttagaaaacattaaaaagtataaaagagcaaaataaatataactgctgattctttcactgttaacattttagtgtgttttcattacaatcCACGTGCAT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190738117 153 - 190850796 aAAGGAGAGTGCACCTTACTAAGTTTTTTtaaaaatacttcatgcttattgtagaacatttagaaaatattaaaaagtataaaagagcaaaataggtatcactgctaattctatcacTGTCAACATTGTAGTGTGTTTT-----CAATCAACTTGAGT
i calJac3.chr3             I 22 C 0
s canFam3.chr16             18175463 157 -  59632846 AAAAGAGAGTGCACCTTACTAAAATCTTTtaaaagtaattcacggttattgtagaacatttggaaaatattaaagagtatgaaagagagaaagaaatagcactcctaattctatttctgttaacatt-tggtgcatttccACCATGACTGATTTGAAT
i canFam3.chr16            I 3872 C 0
e mm10.chr8                 87905018 2948 - 129401213 I
e ponAbe2.chr4             198305833 828 + 198332218 M

a score=1795402.000000
s hg38.chr4_KI270925v1_alt    511961 618 +    555799  
s panTro4.chr4             193231938 619 + 193495092  
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113975530 630 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183885038 619 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189278362 619 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178695449 619 + 178775436  
i papAnu2.chr5             C 0 M 206
s chlSab2.chr7             135629244 617 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190738270 642 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87907966 612 - 129401213  
i mm10.chr8                I 2948 I 8
s canFam3.chr16             18175620 619 -  59632846  
i canFam3.chr16            C 0 C 0
e ponAbe2.chr4             198305833 828 + 198332218 M

a score=808840.000000
s hg38.chr4_KI270925v1_alt    512579 290 +    555799 ATAATGCTTCAATAATTGTGTTTTGAGGGTCTTTGCTACATACTTGAAATATATT-----TTCAAAGCTATCTGACTGA-TTTATGAAGAAATACACATGTG-TTTTGTGCTTCA---------CAAAAGCACATTTGGATATTATTAAACAGAAAAGATAAAATATTACATAGGTCTGAAGAATTAATTTTAAAATGTTTCTTTAAGATAAACAGTGTATCAACTATATCTTAAATGTCATCACTTTGGATGACCAACTAAGCAGATTTACAGACAACCGCATGGCTAAACAGGAATTATTTTGG
s panTro4.chr4             193232557 295 + 193495092 ATACTGCTTCAACAATTGTGTTTTGAGGGTCTTTGCTACATACTTGAAATATATTATATTTTCAAAGCTATCTGACTGA-TTTATGAAGAAATACACATGTG-TTTTGTGCTTCA---------CAAAAACACATTTGGATATTATTAAACAGAAAAGATAAAATATTACATAGGTCTGAAGAATTAATTTTAAAATGTTTCTTTAAGATAAACAGTGTATCAACTATATCTTAAATGTCATCGCTTTGGATGACCAACTAAGCAAATTTACAGACAACTGCATGGCTAAACAGGAATTATTTTGG
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113976160 290 + 115148730 ATACTGCTTCAATAATTGTGTTTTGAGGGTCTTTGCTACATACTTGAAATATATT-----TTCAAAGCTATCTGACTGA-TTTATGAAGAAACACACATGTG-TTTTGTGCTTCA---------CAAAAGCACATTTGGATATTATTAAACAGAAAAGATAAAATATTACATAGGTCTGAAGAATTAATTTTAAAATGTTTCTTTAAGATAAACAGTGTATCAACTATATCTTAAATGTCATCGCTTTGGATGACCAACTAAGCAGATTTACAGACAACCGCATGGCTAAACAGGAATTATTTTGG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183885657 293 + 184069350 ATACTGCTTCAATAATTGTGTTTTGAGGGTCTTTGCTACATGCTTGTAGTATATTATACTTTCAAAGCTATATGACTGA-TTTATGAAGAAACACAC--GTG-TCCTGTGCGTCA---------CAAAAGCACATTTGGATATTATTAAACAGAAAAGATAAAATATTACATAGGTCTGAAGAATTAATTTTAAAACGTTTCTTTAAGATAAACAGTGTATCAACTATATCTTAAATGTCATCGCTTTGGATGACCAACTAGGCAAATTTACAGACAACCACATGGCTAAAAAGGAATTATTTTGG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189278981 293 + 189454096 ATACTGCTTCAATAATTGTGTTTTGAGGGTCTTTGCTACATGCTTGTAGTATATTATACTTTCAAAGCTATATGACTGA-TTTATGAAGAAACACAC--GTG-TCCTGTGCGTCA---------CAAAAGCACATTTGGATATTATTAAACAGAAAAGATAAAATATTACATAGGTCTGAAGAATTAATTTTAAAACGTTTCTTTAAGATAAACAGTGTATCAACTATATCTTAAATGTCATCGCTTTGGATGACCAACTAGGCAAATTTACAGACAACCACATGGCTAAAAAGGAATTATTTTGG
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135629861 293 + 135778131 ATACTGCTTCAATAATTGTGTTTTGAGGGTCTTTGCTACATGCTTGTAATATATTATACTTTCAAAGGTATCTGACTGA-TTTATGAAGAAACACAC--GTG-TCCTGTGTGTCA---------CAAAAGCACATTTGGATATTATTAAACAGAAAAGATAAAATATTACATAGGTCTGAAGAATTAATTTTAAAACATTTCTTTAAGATAAACAGTATATCAACTATATCTTAAATGTCATCGCTTTGGATGACCAACTAGGCAAATTTACAGACAACCACATGGCTAAAAAGGAATTATTTTAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190738912 290 - 190850796 ATGCTCCTTCAATAATTGTGTTTTGAAGGTCTTTGCTACATACTTGAAATACGTTCTATTTTCAAAGCTCTCTGACTGATTTTGTGAAG-----CACATGTG-TTTTATGCTTCA---------CAAAAGCACATTTGGATATTATTAAACAGAAAAGATGAAATATTGCATAGGTCTGAAAAATTAAATTTAAAATGTTTCTTTAAGATAAACAGTCTATCAACTACATCTTAAATGTCATTGCTTAGGATGACCAACTAAGCAGATTTACAGACAACTGCATGGCTAAA-AGGAATTATTTTGA
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87908586 295 - 129401213 TTACTTCTACAATAATGGTGTATGGAGGGCCTCTGCTACATATTTGAAATATGTTCTATTTTCAAAGCTAACTGGCTGA-TTTATGGAGAAACACACATGTG-TTTCTTGCTTCC---------CATAAGCACATTTGGATATTATTAAACTGAGAAGATAAAATATTGCATGGTGCTGAAGAATTAATTTCCAAATGTTTCTTTAAGATAAACAGCGTATCAACTATATCTTGAATGTCATCACTTTGGATGACCAACTAAACAGATTTATAGACAACTGCTTTGCTAAAAAGGAATTGTTTTGG
i mm10.chr8                I 8 C 0
s canFam3.chr16             18176239 305 -  59632846 ATACTGCTTTAATAATTGAATTTTGAAGGCCTTTGCTACATACTTGAAGTGTACTATGTTTTCAAAGTTAAATGACTGA-TTTATGAAGAAACACACATGTGTTTTTTTGCTTCACAAAGCAACCAAAAGCACATTTGGATATTATTAAATTGAAAAGATAAAATATTGCACAGGTCTGAAGAATTAATTTTAAAATATTTCTTTAAGATAAACAGCGTATCAACTATATCTTAAATGTCATCACTTTGGATGACCAACTAAGCAGATTTACAGACAACTGCATGGCTGAAAAGGAATTATTTCAG
i canFam3.chr16            C 0 C 0
e papAnu2.chr5             178696068 206 + 178775436 M
e ponAbe2.chr4             198305833 828 + 198332218 M

a score=106098.000000
s hg38.chr4_KI270925v1_alt    512869 29 +    555799 TCTCTTTGTCATAAACTATTATGTCCAAA
s panTro4.chr4             193232852 29 + 193495092 TCTCTTTGTCATAAACTATTATGTCCAAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198306668 29 + 198332218 TCTCTTTGTCATAAACTATTATGTCCAAA
i ponAbe2.chr4             M 828 C 0
s nomLeu3.chr7b            113976450 29 + 115148730 TCTCTTTGTCATAAACGATTATGTCCAAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183885950 29 + 184069350 TCTCTTTGTCATAAACTATTATGTCCAAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189279274 29 + 189454096 TCTCTTTGTCATAAACTATTATGTCCAAA
i macFas5.chr5             C 0 C 0
s chlSab2.chr7             135630154 29 + 135778131 TCTCTTTGTCATAAACTATTATGTCCAAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190739202 29 - 190850796 TCTCCTTATCATAAACTATTATGTCCAAA
i calJac3.chr3             C 0 I 2
s mm10.chr8                 87908881 29 - 129401213 TCTATCTGCCATAGACTATTATGTCCAAA
i mm10.chr8                C 0 C 0
s canFam3.chr16             18176544 29 -  59632846 TCTATCTGTCAAAAGCTATTATGTTCAAA
i canFam3.chr16            C 0 C 0
e papAnu2.chr5             178696068 206 + 178775436 M

a score=3341918.000000
s hg38.chr4_KI270925v1_alt    512898  998 +    555799  
s panTro4.chr4             193232881 1004 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198306697 1001 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113976479  995 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183885979  998 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189279303  998 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178696274  998 + 178775436  
i papAnu2.chr5             M 206 C 0
s chlSab2.chr7             135630183  995 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190739233 1002 - 190850796  
i calJac3.chr3             I 2 C 0
s mm10.chr8                 87908910 1023 - 129401213  
i mm10.chr8                C 0 I 103
s canFam3.chr16             18176573 1016 -  59632846  
i canFam3.chr16            C 0 C 0

a score=2841615.000000
s hg38.chr4_KI270925v1_alt    513896 834 +    555799  
s panTro4.chr4             193233885 834 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198307698 835 + 198332218  
i ponAbe2.chr4             C 0 M 938
s nomLeu3.chr7b            113977474 833 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183886977 798 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189280301 798 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178697272 794 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135631178 801 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190740235 829 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87910036 947 - 129401213  
i mm10.chr8                I 103 I 3
s canFam3.chr16             18177589 813 -  59632846  
i canFam3.chr16            C 0 C 0

a score=63457.000000
s hg38.chr4_KI270925v1_alt    514730 32 +    555799 ATTCTCTTTTT------------CTTTCGTTATTTTATCTTTCT
s panTro4.chr4             193234719 32 + 193495092 ATTCTCTTTTT------------CTTTCGCTATTTTATCTTTCT
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113978307 28 + 115148730 ATTCTCTTTTT------------CTTTCGTTATTTTA----TCT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183887775 31 + 184069350 ATTCTCTTTTT-------------TTCCGTTATTTTATCTTTCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189281099 31 + 189454096 ATTCTCTTTTT-------------TTCCGTTATTTTATCTTTCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178698066 31 + 178775436 attctcttttt-------------ttccgttattttatctttct
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135631979 31 + 135778131 ATTCCCTTTTT-------------TTCCATTATTTTATCTTTCT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190741064 44 - 190850796 ATTCTCTCttttttttttttttttttttgctattttctctttct
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87910986 31 - 129401213 GTTATTTTGTt-------------ctctctctctctctctctct
i mm10.chr8                I 3 I 1024
s canFam3.chr16             18178402 28 -  59632846 ATTCTTTTTTT----------------AATCCCCTTCTCTTTTT
i canFam3.chr16            C 0 C 0
e ponAbe2.chr4             198308533 938 + 198332218 M

a score=542493.000000
s hg38.chr4_KI270925v1_alt    514762 235 +    555799 TAAC------------CTATAATATATATGATTTTGCTTGTTCTAAAAGTGAGCTCACTAAAAGTGAGCCTTCGTTTTATGACAATTGTAGCCCAGATATATCTATTGGGAAATTTTTTATATGAATGCAGTGT-CTATATCTATATAATATTCATTTTTGTAGTCTGTAGATCTGAATGGGTGACTAAATTAA----TGTTA-----------TGAACGGCTCACTTGAAATAACAAAGAGATAATTCCTTAATATATAAGC
s panTro4.chr4             193234751 235 + 193495092 TAAC------------CTATAATATATATGATTTTCCTTGTTCTAAAAGTGAGCTCACTAAAAGTGAGCCTTCCTTTTATGACAATTGTAGCCCAGATATATCTATTAGGAAACTTTTTATATGAATGCAGTGT-CTATATCTATATAATATTCATTTTTGTAGTCTGTAGATCTGAATGGGTGACTAAATTAA----TGTTA-----------TGAACGGCTCACGTGAAATAACAAAGAGACAATTCCTTAATATATAAGC
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113978335 235 + 115148730 TAAC------------CTATAATATATATGATTTTGCTTGTTCTAAAAGTGAGCTCACTAAAAGTGAGCCTTCCTTTTGTGACAATTGTAGCCCAGATATATCTATTAGGAAATTTTTTATATGAATGCAGTGT-CTATATTTATATAATATTCATTTTTGTAGTCTGTAGATCTGAATGGGTGATTAAATTAA----TTTTA-----------TAAACGGCTCACTTGAAATAACAAAGAGACCATTCCTTAATATATAAGC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183887806 235 + 184069350 TAAC------------CTATAATACATATTATCTTGCTTCCTCTAAAAGTGAGCTCACTAAAAGTGAGCCTTCCTTTCATGACAATTGCAGCCCAGATGTATCTATTTGGAAATTTTTTATATGAACGCAGTGT-CTATATCTATATAATGTTCATTTTTGTAGTCTGTAGATCTGAATGAGTGATTAAATTCA----TTCTA-----------CAAATGGCTCACTTGAAATAATAAAGAGACCATTCCTTAACATATAAGC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189281130 235 + 189454096 TAAC------------CTATAATATATATTATCTTGCTTCCTCTAAAAGTGAGCTCACTAAAAGTGAGCCTTCCTTTCATGACAATTGCAGCCCAGATGTATCTATTTGGAAATTTTTTATATGAACGCAGTGT-CTATATCTATATAATGTTCATTTTTGTAGTCTGTAGATCTGAATGAGTGATTAAATTCA----TTCTA-----------CAAATGGCTCACTTGAAATAATAAAGAGACCATTCCTTAACATATAAGC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178698097 220 + 178775436 taac------------ctataatatatattatcttgCTTCCT---------------CTAAAAGTGAGCCTTCCTTTCGTGACAATTGCAGCCCAGATACATCTATTTGGAAATTTTTTATATGAACGCAGTGT-CTATATCTATATAATGTTCATTTTTGTAGTCTGTAGATCTGAATGGGTGATTAAATTAA----TTCTA-----------CAAATGGCTCACTTGAAATAATAAAGAGACCATTCCTTAACATATAAGC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135632010 233 + 135778131 TAAC------------CTATAATATATATTATCTTGCTTCCTCTAAAAGTGAGCTCACTGAAAGTGAGCCTTCCGTTCATGACAATTGCAGCCCAGATGTATCTATTTGGAAATTTTTTATATGAATGCAGTGT-CTGTATCTATATAACGTTCATTTTTGTAGTCTGTAGATCTGAATGGGTGATTAAATTAA----TTCGA-----------CAAATGGCTCACTTGAAATAAT--AGAGACCATTCCTCAATATATAAGC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190741108 231 - 190850796 tAAC------------CTGTAATATATATTATTTTGCTTGCTCTAAAAGTGAGTGCACTAAAAGTGAGCCTTCTTTTTGTGACACCTGTAGCCCAGAT--ATTTGTTAGAAATTTTTTTACACATATGCAGT-T-CTATATGTATATAATATTCATTTTTATAGTCTGTAGATCT-AATGGGTGATTAAGTTAA----TTTTA-----------TAGATGGCTCACTTGAAATAGCAGAGAGACCACTCCTTAATATATAAGC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18178430 234 -  59632846 TAACACATCTAGCTGTCTATATTAAATATTCT--------CTCTATA-----------TATAAGTGAGCCT----TTTATCATATCTGTAGCCCAAAAATTTCTGTT----ATTTTTTTCTACACATGCAATGTGTTATATAGATATAGTGTTTATTTTTGTAGTTCATAGACCTCAATAGGTCattaaattaaatttttttaaattaaatttttaaatGATTCCTTTCAGATAGCAAAGAAGTCATTCTTCAAC--AGAAGC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87911017 1024 - 129401213 I
e ponAbe2.chr4             198308533 938 + 198332218 M

a score=599823.000000
s hg38.chr4_KI270925v1_alt    514997 229 +    555799 ACAAAAATTAAAATCAATTT-------------------------GCAATCTTGATCAAAGATATCAATAGTCACAAACAAGGC---TGATTAAG-----AAAGCAACGTGAACATTCTGTAACTTGATCACAACCCATAATGAGTGTTGTCCAGAGGAGAGCCTTTTAGCAATTCACAAGGCCCTGTGTGCCTAACAGTTAATTCCTGCTTAGCCAGATTGTGCAGATTCATTCTCAGGCACAACATATA-AAATGCTGGGA
s panTro4.chr4             193234986 228 + 193495092 ACAAAAATTAAAATCAATTT-------------------------GCAATCTTGATCAAAGATATCAATAGTCACAAACAAGGC---TGATTAAG-----AAAGCACCATGAACATTCTGTAACTTGATCACAACCCATAATGAGTGTTGTCCAGAGGAGAGACTTTTAGCAATTCACAAGGCCCTGTGTGCCTAACAGTTAATTCCTGCTTAGCCAGATTGTGC-GATTCATTCTCAGGCACAACATATA-AAATGCTGGGA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113978570 229 + 115148730 ACAAAAATTAAAATCAATTT-------------------------GCAATCTTGATCAACAATATCAATAGTCACAAACAAGGC---TGATTAAG-----AAAGCAACGTGAACATTCTATAACTTGATCACAACCTATAATGAGTGTTGTCCGGAGGAGAGACTTTTAGCAATTCACAAGGCCCTGTGTGCCTAACAGTTAATTCCTGCTTACCCAGAGTGTACAGATTCATTCTCAGGCACAACATATA-AAATGCTGGGA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183888041 232 + 184069350 ACAAAAATTAAAGTCAATTT-------------------------GTAATCTTGATCAAAGATATCGGAAGTCACAAACAAGGC---TGATTAGGAAAGCAAAGCAACATGAACATTCTGTAACTTGATCACAATCCATAATGAGTGTTGCCCAGAAGAGAGCCTTTTAGCAATTCA-AAGGCCCCGTGTGCCTAAGAGTTAATTCCTACTTGCCCAGAGTGTACAGCTTCATTCTCA-GCACAACATATA-AAATGCTGGGA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189281365 232 + 189454096 ACAAAAATTAAAGTCAATTT-------------------------GCAATCTTGATCAAAGATATCGGAAGTCACAAACAAGGT---TGATTAAGAAAGCAAAGCAACATGAACATTCTGTAACTTGATCACAATCCATAATGAGTGTTGCCCAGAAGAGAGCCTTTTAGCAATTCA-AAGGCCCCGTGTGCCTAAGAGTTAATTCCTACTTGCCCAGAGTGTACAGCTTCATTCTCA-GCACAACATATA-AAATGCTGGGA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178698317 232 + 178775436 ACAAAAATTAAAGTCAATTT-------------------------GCAATCTTGATCAAAGATATCGGAAGTCACAAACAAGGC---TGATTAAGAAAGCAAAGCAACATGAACATTCTGTAACTTGATCACAATCCATAATGAGTGTTGCCCAGAAGACAGCCTTTTAGCAATTCA-AAGGCCCCGTGTGCCTAAGAGTTAATTCCTACTTGCCCAGAGCGTACAGcttcattctca-gcaaaacaTATA-AAATGCAGGGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135632243 232 + 135778131 ACAAAAATTAAAGTCAATTT-------------------------GCAATCTTTACCAAAGATATCGGAAGTCACAAACAAGGC---TGATTAAGAAAGCAAAGCAACATGAACATTCTCTAACTTGATCATAATCCATAATGAGTGTTGCCCAGAAGAGAGCCTTTTAGCAATTCA-AAGGCCCCGTGTGCCTAAGAGTTAATTCCTACTTGCCCAGAGTGTACAGCTTCATTCTCA-GCACAACATACA-AAATGATGGGA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190741339 226 - 190850796 ACAAAAATTAAAATCACTTT-------------------------GCAATCTTGATCAACTATATCA--AATCACAAACAAAGC---TGATGAAG------AAGCAACACGAACATTCTGTAACTTGATCACAAACCATAATGAGTGTTGCCCAGAGGGAAGCCTTTTAGTAATTCACACAGCACCGTTTGTCTAAGATTGAATTCCTTCTTACCCAGAGTGTACAGATTCCTTCTCAGGCACAACATATA-AAATGCTGGGA
i calJac3.chr3             C 0 I 333
s mm10.chr8                 87912041 215 - 129401213 ACTAAAGATAAAATCACTTT-------------------------GAAACCTTTAAAAAAGAAA--------CACAAATCAGGCAAAAGACCACA-----AAGGCAATGTAGATACTCAGTACTTCTATCACAATTCATAATCTGTATT-CCCAGAATGAAGCCTTTTAATAATTCCCAGGGTGCTATGTGCCTAAGATTTAAATTC-------CTAGACTCGACAGGTTCA--CTGAGACCTATCACACATAAATTCTGGAT
i mm10.chr8                I 1024 C 0
s canFam3.chr16             18178664 252 -  59632846 AAGAAGATTAAGATCACTTTGCAAACTTTCTTTTTTTTTCACTTCGCAACCTTGGTCAAAGATATCAACATCCAGAAACAAGAC---TGATTGGG-----GAAGCAACATGGATATTCAGTAACTTGACCACAACCTACAATCTGTG-GGCCCAGAGCAGAGCCTTTGGGTAATTCACAGGGCCGTATGTAACTAGGATTTAATTCCTATTTGCTCAGAGC-TATAAATTCATTCTTAAGAACAGCACATC-ACACCCTAAAG
i canFam3.chr16            C 0 C 0
e ponAbe2.chr4             198308533 938 + 198332218 M

a score=81526.000000
s hg38.chr4_KI270925v1_alt    515226 36 +    555799 AATACCCCGA--TTTTTG-----GCTGCAGAACTGCAATTGAG
s panTro4.chr4             193235214 35 + 193495092 AATACCCTGA---TTTTG-----GCTGCAGAACCGCAATTGAG
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113978799 41 + 115148730 AATACCCTGA--TTTTTGGCTGTGCTGCAGAACTGCAATTGAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183888273 41 + 184069350 ATTGCCCTGA--TTTTTGACTGTGCCAAAGAACTGCCACTGAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189281597 41 + 189454096 ATTGCCCTGA--TTTTTGACTGTGCCAAAGAACTGCCACTGAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178698549 41 + 178775436 ATTGCCCTGA--TTTTTGACTGTGCCAAAGAACTGCCACTGAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135632475 41 + 135778131 ATTGCCCTGA--TTTTTGACTGTGCTGCAGAACTGCCACTGAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190741898 41 - 190850796 AATGCCCAGG--TTTTTGACTGCGCTGCAGAACTGCAATCGAG
i calJac3.chr3             I 333 C 0
s mm10.chr8                 87912256 43 - 129401213 AATATCACGAATGTCTTCACCATGATATAAAAATATGATTAAG
i mm10.chr8                C 0 C 0
s canFam3.chr16             18178916 42 -  59632846 AATTCCCTGA-TTTCTTGACCTTGGCATTGAACTGAAACTGAG
i canFam3.chr16            C 0 C 0
e ponAbe2.chr4             198308533 938 + 198332218 M

a score=11303.000000
s hg38.chr4_KI270925v1_alt    515262 10 +    555799 CCATGAGGAA
s panTro4.chr4             193235249 10 + 193495092 CCATGAGGAA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113978840 10 + 115148730 CCATGAGGAA
i nomLeu3.chr7b            C 0 C 0
s chlSab2.chr7             135632516 10 + 135778131 CCATGAGGAA
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87912299 10 - 129401213 TTATGAGGAA
i mm10.chr8                C 0 C 0
s canFam3.chr16             18178958 10 -  59632846 CTATAAAGAA
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190741939  0 - 190850796 C
e papAnu2.chr5             178698590  0 + 178775436 C
e macFas5.chr5             189281638  0 + 189454096 C
e rheMac3.chr5             183888314  0 + 184069350 C
e ponAbe2.chr4             198308533 938 + 198332218 M

a score=-353.000000
s hg38.chr4_KI270925v1_alt    515272  6 +    555799 G-ACAGT-----------------
s panTro4.chr4             193235259  6 + 193495092 G-ACAGT-----------------
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113978850  6 + 115148730 G-ACAGC-----------------
i nomLeu3.chr7b            C 0 C 0
s chlSab2.chr7             135632526  6 + 135778131 G-ACAGT-----------------
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87912309 24 - 129401213 GCACAGCACTTGCTTATATATACC
i mm10.chr8                C 0 C 0
e canFam3.chr16             18178968  0 -  59632846 C
e calJac3.chr3             190741939  0 - 190850796 C
e papAnu2.chr5             178698590  0 + 178775436 C
e macFas5.chr5             189281638  0 + 189454096 C
e rheMac3.chr5             183888314  0 + 184069350 C
e ponAbe2.chr4             198308533 938 + 198332218 M

a score=9131.000000
s hg38.chr4_KI270925v1_alt    515278 25 +    555799 CTCCGAGAAGACATAGGAGGGCACA
s panTro4.chr4             193235265 25 + 193495092 CTCCGAGAAGACATAGGAGGGCACA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113978856 25 + 115148730 CTCAGAGGAGAAATAGGAGAGCACA
i nomLeu3.chr7b            C 0 C 0
s mm10.chr8                 87912333 25 - 129401213 CTTGAACAAGAAACAGGAGACCACA
i mm10.chr8                C 0 C 0
e canFam3.chr16             18178968  0 -  59632846 C
e calJac3.chr3             190741939  0 - 190850796 C
e chlSab2.chr7             135632532  0 + 135778131 C
e papAnu2.chr5             178698590  0 + 178775436 C
e macFas5.chr5             189281638  0 + 189454096 C
e rheMac3.chr5             183888314  0 + 184069350 C
e ponAbe2.chr4             198308533 938 + 198332218 M

a score=1484.000000
s hg38.chr4_KI270925v1_alt    515303 6 +    555799 GCTCTC
s panTro4.chr4             193235290 6 + 193495092 GCTCTC
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113978881 6 + 115148730 GCTTTC
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87912358 0 - 129401213 C
e canFam3.chr16             18178968 0 -  59632846 C
e calJac3.chr3             190741939 0 - 190850796 C
e chlSab2.chr7             135632532 0 + 135778131 C
e papAnu2.chr5             178698590 0 + 178775436 C
e macFas5.chr5             189281638 0 + 189454096 C
e rheMac3.chr5             183888314 0 + 184069350 C
e ponAbe2.chr4             198308533 938 + 198332218 M

a score=10285.000000
s hg38.chr4_KI270925v1_alt    515309 8 +    555799 CCATGAGG
s panTro4.chr4             193235296 8 + 193495092 CCATGAGG
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113978887 8 + 115148730 CCATGAGG
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189281638 8 + 189454096 CCATGAGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178698590 8 + 178775436 CCATGAGG
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190741939 8 - 190850796 CTATGAAG
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87912358 0 - 129401213 C
e canFam3.chr16             18178968 0 -  59632846 C
e chlSab2.chr7             135632532 0 + 135778131 C
e rheMac3.chr5             183888314 0 + 184069350 C
e ponAbe2.chr4             198308533 938 + 198332218 M

a score=32007.000000
s hg38.chr4_KI270925v1_alt    515317 42 +    555799 AAGACAGCCTCAGAGGAGACATAGGAGGGCACAGCTCTCCCA
s panTro4.chr4             193235304 42 + 193495092 AAGACAGCCTCAGAGGAGACAGAGGAGGGCACAGCTCTCCCA
i panTro4.chr4             C 0 C 0
s macFas5.chr5             189281646 42 + 189454096 AAGACAGCCTCGCAGGAGAAACAGGAGAGTACGGCTTTCCCA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178698598 42 + 178775436 AAGACAGCCTCGCAGGAGAAACAGGAGAGTACGGCTTTCCCA
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190741947 42 - 190850796 AAGACAGCCTCAGAGGAGAAATAAGAGAGCACAGCTTTCCCA
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87912358  0 - 129401213 C
e canFam3.chr16             18178968  0 -  59632846 C
e chlSab2.chr7             135632532  0 + 135778131 C
e rheMac3.chr5             183888314  0 + 184069350 C
e nomLeu3.chr7b            113978895  0 + 115148730 C
e ponAbe2.chr4             198308533 938 + 198332218 M

a score=1898.000000
s hg38.chr4_KI270925v1_alt    515359 2 +    555799 TG
s panTro4.chr4             193235346 2 + 193495092 TG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198309471 2 + 198332218 TG
i ponAbe2.chr4             M 938 C 0
s macFas5.chr5             189281688 2 + 189454096 CG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178698640 2 + 178775436 CG
i papAnu2.chr5             C 0 C 0
s calJac3.chr3             190741989 2 - 190850796 TG
i calJac3.chr3             C 0 T 47
e mm10.chr8                 87912358 0 - 129401213 C
e canFam3.chr16             18178968 0 -  59632846 C
e chlSab2.chr7             135632532 0 + 135778131 C
e rheMac3.chr5             183888314 0 + 184069350 C
e nomLeu3.chr7b            113978895 0 + 115148730 C

a score=3790.000000
s hg38.chr4_KI270925v1_alt    515361 6 +    555799 AGGAAG
s panTro4.chr4             193235348 6 + 193495092 AGGAAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198309473 6 + 198332218 AGGAGG
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189281690 6 + 189454096 GCAAAG
i macFas5.chr5             C 0 T 58
s papAnu2.chr5             178698642 6 + 178775436 GCAAAG
i papAnu2.chr5             C 0 T 58
s calJac3.chr3             190741944 6 - 190850796 AAGAAG
i calJac3.chr3             T 47 C 0
e mm10.chr8                 87912358 0 - 129401213 C
e canFam3.chr16             18178968 0 -  59632846 C
e chlSab2.chr7             135632532 0 + 135778131 C
e rheMac3.chr5             183888314 0 + 184069350 C
e nomLeu3.chr7b            113978895 0 + 115148730 C

a score=19674.000000
s hg38.chr4_KI270925v1_alt    515367 41 +    555799 ACAGCCTCAGAGAAGACATAGGAGGGCACAGCTCTCTCATG
s panTro4.chr4             193235354 41 + 193495092 ACAGCCTCCGAGGAGACATAGGAGGGCACAGCTCTCTCATG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198309479 41 + 198332218 ACGGCCTCAGAGGAGACATAGGAGAGCACAGCTTTCCCATG
i ponAbe2.chr4             C 0 C 0
s calJac3.chr3             190741950 41 - 190850796 ACAGCCTCAGAGGAGAAATAAGAGAGCACAGCTTTCCCATG
i calJac3.chr3             C 0 T 47
e mm10.chr8                 87912358  0 - 129401213 C
e canFam3.chr16             18178968  0 -  59632846 C
e chlSab2.chr7             135632532  0 + 135778131 C
e papAnu2.chr5             178698648 58 + 178775436 T
e macFas5.chr5             189281696 58 + 189454096 T
e rheMac3.chr5             183888314  0 + 184069350 C
e nomLeu3.chr7b            113978895  0 + 115148730 C

a score=22186.000000
s hg38.chr4_KI270925v1_alt    515408 47 +    555799 AGGTAGACAGCCTCAGAGGAGACATAGGAGAGCACAGCTCTCCCACG
s panTro4.chr4             193235395 47 + 193495092 AGGAAGACAGCCTCAGAGGAGACATAGGAGGGCACAGCTCTCTCATG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198309520 47 + 198332218 AGGAAGACGGCCTCAGAAGAGACATAGGAGAGCACAGCTGTCCCATG
i ponAbe2.chr4             C 0 C 0
s calJac3.chr3             190741944 47 - 190850796 AAGAAGACAGCCTCAGAGGAGAAATAAGAGAGCACAGCTTTCCCATG
i calJac3.chr3             T 47 T 50
e mm10.chr8                 87912358  0 - 129401213 C
e canFam3.chr16             18178968  0 -  59632846 C
e chlSab2.chr7             135632532  0 + 135778131 C
e papAnu2.chr5             178698648 58 + 178775436 T
e macFas5.chr5             189281696 58 + 189454096 T
e rheMac3.chr5             183888314  0 + 184069350 C
e nomLeu3.chr7b            113978895  0 + 115148730 C

a score=11440.000000
s hg38.chr4_KI270925v1_alt    515455 44 +    555799 AGGAAGACAGCCTCAGAGAAGACATAGGAGGGCACAGCTCTCTC
s panTro4.chr4             193235442 44 + 193495092 AGGAAGACAGCCTCAGAGGAGACATAGGAGGGCACAGCTCTCCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198309567 44 + 198332218 AGGAAGACGGCCTCGGAGGAGACATAGGAGAGCACAGCTCTCCC
i ponAbe2.chr4             C 0 C 0
e mm10.chr8                 87912358  0 - 129401213 C
e canFam3.chr16             18178968  0 -  59632846 C
e calJac3.chr3             190741991 50 - 190850796 T
e chlSab2.chr7             135632532  0 + 135778131 C
e papAnu2.chr5             178698648 58 + 178775436 T
e macFas5.chr5             189281696 58 + 189454096 T
e rheMac3.chr5             183888314  0 + 184069350 C
e nomLeu3.chr7b            113978895  0 + 115148730 C

a score=3355.000000
s hg38.chr4_KI270925v1_alt    515499 8 +    555799 ATGAGGTA
s panTro4.chr4             193235486 8 + 193495092 ATGAGGAA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198309611 8 + 198332218 ATGAAGAA
i ponAbe2.chr4             C 0 C 0
s calJac3.chr3             190741941 8 - 190850796 ATGAAGAA
i calJac3.chr3             T 50 C 0
e mm10.chr8                 87912358 0 - 129401213 C
e canFam3.chr16             18178968 0 -  59632846 C
e chlSab2.chr7             135632532 0 + 135778131 C
e papAnu2.chr5             178698648 58 + 178775436 T
e macFas5.chr5             189281696 58 + 189454096 T
e rheMac3.chr5             183888314 0 + 184069350 C
e nomLeu3.chr7b            113978895 0 + 115148730 C

a score=30565.000000
s hg38.chr4_KI270925v1_alt    515507 37 +    555799 GACAGCCTCAGAGGAGATATAGGAGGGCACAGCTCTC
s panTro4.chr4             193235494 37 + 193495092 GACAGCCTCAGAGGAGACATAGGAGGGCACAGCTCTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198309619 37 + 198332218 GACAGCCTCAGAAGAGACATAGGAGAGCACAGCTTTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113978895 37 + 115148730 GACAGCCTCAGAGGAGAAATAGGAGGGCACAGCTTAC
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190741949 37 - 190850796 GACAGCCTCAGAGGAGAAATAAGAGAGCACAGCTTTC
i calJac3.chr3             C 0 T 47
e mm10.chr8                 87912358  0 - 129401213 C
e canFam3.chr16             18178968  0 -  59632846 C
e chlSab2.chr7             135632532  0 + 135778131 C
e papAnu2.chr5             178698648 58 + 178775436 T
e macFas5.chr5             189281696 58 + 189454096 T
e rheMac3.chr5             183888314  0 + 184069350 C

a score=40776.000000
s hg38.chr4_KI270925v1_alt    515544 52 +    555799 CCATGAGGAAG--ACAGCCTCAGAGGAGACATAGGAGGGCACAGCTCTCTCATG
s panTro4.chr4             193235531 52 + 193495092 TCATGAGGAAG--ACAGCCTCAGAGGAGACATAGGAGGGCACAGCTCTCCCATG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198309656 52 + 198332218 CCATGAGGAAG--ACAGCCTCGGGGGAGACATAGGAGGGAACAGCTTTCCCATG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113978932 54 + 115148730 CCATGAGGAAGACACAGCCTCAGAGGAGACATAGGAGAGCGCAGCTTTCCCATG
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190741939 52 - 190850796 CTATGAAGAAG--ACAGCCTCAGAGGAGAAATAAGAGAGCACAGCTTTCCCATG
i calJac3.chr3             T 47 T 47
e mm10.chr8                 87912358  0 - 129401213 C
e canFam3.chr16             18178968  0 -  59632846 C
e chlSab2.chr7             135632532  0 + 135778131 C
e papAnu2.chr5             178698648 58 + 178775436 T
e macFas5.chr5             189281696 58 + 189454096 T
e rheMac3.chr5             183888314  0 + 184069350 C

a score=30741.000000
s hg38.chr4_KI270925v1_alt    515596 42 +    555799 AGGAAG--ACAGCCTCCGAGGAGACATAGGAGGGCACAGCTCTC
s panTro4.chr4             193235583 42 + 193495092 AGGAAG--ACAGCCTCAGAGGAGACATAGGAGGGCACAGCTCTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198309708 42 + 198332218 AGGAAG--ACGGCCTCAGAGGAGACATAGGAGGGAACAGCTTTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113978986 43 + 115148730 AGGAGGACACAGCCTCAGAGGAGA-ATAGGAGGGCACAGCTTTC
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190741944 42 - 190850796 AAGAAG--ACAGCCTCAGAGGAGAAATAAGAGAGCACAGCTTTC
i calJac3.chr3             T 47 T 47
e mm10.chr8                 87912358  0 - 129401213 C
e canFam3.chr16             18178968  0 -  59632846 C
e chlSab2.chr7             135632532  0 + 135778131 C
e papAnu2.chr5             178698648 58 + 178775436 T
e macFas5.chr5             189281696 58 + 189454096 T
e rheMac3.chr5             183888314  0 + 184069350 C

a score=82551.000000
s hg38.chr4_KI270925v1_alt    515638 52 +    555799 CCATGAGGAAG--ACAGCCTCAGAGGAGACATAGGAGGGCACAGCTCTCCCATG
s panTro4.chr4             193235625 52 + 193495092 CCATGAGGAAG--ACAGCCTCCGAGGAGACATAGGAGGGCACAGCTCTCTCATG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198309750 52 + 198332218 CCATGAGGAAG--ACGGCCTCAGAGGAGACATAGGAGAGTACAGCTTTCCCATG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113979029 54 + 115148730 CCATGAGGAAGACACAGCCTCAGAGGAGAAATAGGAGAGCGCAGCTTTCCCATG
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189281638 52 + 189454096 CCATGAGGAAG--ACAGCCTCGCAGGAGAAACAGGAGAGTACGGCTTTCCCACG
i macFas5.chr5             T 58 C 0
s papAnu2.chr5             178698590 52 + 178775436 CCATGAGGAAG--ACAGCCTCGCAGGAGAAACAGGAGAGTACGGCTTTCCCACG
i papAnu2.chr5             T 58 C 0
s calJac3.chr3             190741939 52 - 190850796 CTATGAAGAAG--ACAGCCTCAGAGGAGAAATAAGAGAGCACAGCTTTCCCATG
i calJac3.chr3             T 47 C 0
e mm10.chr8                 87912358  0 - 129401213 C
e canFam3.chr16             18178968  0 -  59632846 C
e chlSab2.chr7             135632532  0 + 135778131 C
e rheMac3.chr5             183888314  0 + 184069350 C

a score=22690.000000
s hg38.chr4_KI270925v1_alt    515690 53 +    555799 AGGAAGAGAGCCTCAGAGAAGACATAAGAGGGCACAGCTCTCCCATGAGGAAG
s panTro4.chr4             193235677 53 + 193495092 AGGAAGACAGCCTCAGAGGAGACATAGGAGGGCACAGCTCTCTCATGAGGAAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198309802 53 + 198332218 AGGAAGACAGCCTCGGAGGAGACATAGGAGGGCACAGCTTTCCCATGAGGAAG
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189281690 37 + 189454096 --GCAAAGGGC--------------AAGAGACCTGAACTCTGCTGTGAAGAAG
i macFas5.chr5             C 0 T 89
s papAnu2.chr5             178698642 37 + 178775436 --GCAAAGGGC--------------AAGAGACCTGAACTCTGCTGTGAAGAAG
i papAnu2.chr5             C 0 T 89
s calJac3.chr3             190741991 40 - 190850796 --GCTAAGGGC-TCA----------AGAAAACCTGAACACTGCTGTGAAGAAG
i calJac3.chr3             C 0 I 3
e mm10.chr8                 87912358  0 - 129401213 C
e canFam3.chr16             18178968  0 -  59632846 C
e chlSab2.chr7             135632532  0 + 135778131 C
e rheMac3.chr5             183888314  0 + 184069350 C
e nomLeu3.chr7b            113979083  0 + 115148730 C

a score=12896.000000
s hg38.chr4_KI270925v1_alt    515743 39 +    555799 ACAGCCTCAGAGGAGACATAAGAGGGCACAGCTCTCCCA
s panTro4.chr4             193235730 39 + 193495092 ACAGCCTCAGAGGAGACATAGGAGGGCACAGCTCTCCCA
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198309855 39 + 198332218 ACGGCCTCAGAGGAGACATAGGAGGGCACAGCTTTCCCA
i ponAbe2.chr4             C 0 C 0
s calJac3.chr3             190742034 35 - 190850796 ATTGTCTCAGAAAGTCCAGGGCAAG----AGCTCTCCCA
i calJac3.chr3             I 3 T 80
e mm10.chr8                 87912358  0 - 129401213 C
e canFam3.chr16             18178968  0 -  59632846 C
e chlSab2.chr7             135632532  0 + 135778131 C
e papAnu2.chr5             178698679 89 + 178775436 T
e macFas5.chr5             189281727 89 + 189454096 T
e rheMac3.chr5             183888314  0 + 184069350 C
e nomLeu3.chr7b            113979083  0 + 115148730 C

a score=9237.000000
s hg38.chr4_KI270925v1_alt    515782 44 +    555799 TGAGGAAGAGAGCCTCAGAGAAGACATAGGAGGGCACAGCTCTC
s panTro4.chr4             193235769 44 + 193495092 TGAGGAAGACAGCCTCAGAGGAGACATAGGAGGGCACAGCTCTC
i panTro4.chr4             C 0 I 139
s ponAbe2.chr4             198309894 44 + 198332218 TGAGGAAGACGGCCTCGGAGGAGACATAGGAGAGTACAGCTTTC
i ponAbe2.chr4             C 0 C 0
s calJac3.chr3             190741989 33 - 190850796 TGGCTAAG---GGCTCA-AGAAAACCT----GAACACTGCT---
i calJac3.chr3             T 80 C 0
e mm10.chr8                 87912358  0 - 129401213 C
e canFam3.chr16             18178968  0 -  59632846 C
e chlSab2.chr7             135632532  0 + 135778131 C
e papAnu2.chr5             178698679 89 + 178775436 T
e macFas5.chr5             189281727 89 + 189454096 T
e rheMac3.chr5             183888314  0 + 184069350 C
e nomLeu3.chr7b            113979083  0 + 115148730 C

a score=7142.000000
s hg38.chr4_KI270925v1_alt    515826 24 +    555799 CCATGAGGAAGAGA---GCCTCAGAGA
s panTro4.chr4             193235952 24 + 193495092 CCACGAGGAAGAGA---GCCTCAGAGG
i panTro4.chr4             I 139 C 0
s ponAbe2.chr4             198309938 24 + 198332218 CCATGAGGAAGACG---GCCTCGGAGG
i ponAbe2.chr4             C 0 C 0
s calJac3.chr3             190742022 25 - 190850796 --GTGAAGAAGGAAATTGTCTCAGAAA
i calJac3.chr3             C 0 T 106
e mm10.chr8                 87912358  0 - 129401213 C
e canFam3.chr16             18178968  0 -  59632846 C
e chlSab2.chr7             135632532  0 + 135778131 C
e papAnu2.chr5             178698679 89 + 178775436 T
e macFas5.chr5             189281727 89 + 189454096 T
e rheMac3.chr5             183888314  0 + 184069350 C
e nomLeu3.chr7b            113979083  0 + 115148730 C

a score=6697.000000
s hg38.chr4_KI270925v1_alt    515850 25 +    555799 AGACATAGGAGGGCACAGCTCTCTC
s panTro4.chr4             193235976 25 + 193495092 AGACATAGGAGGGCACAGCTCTCTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198309962 25 + 198332218 AGACATAGGAGGGCACAGCTTTCCC
i ponAbe2.chr4             C 0 C 0
e mm10.chr8                 87912358  0 - 129401213 C
e canFam3.chr16             18178968  0 -  59632846 C
e calJac3.chr3             190742047 106 - 190850796 T
e chlSab2.chr7             135632532  0 + 135778131 C
e papAnu2.chr5             178698679 89 + 178775436 T
e macFas5.chr5             189281727 89 + 189454096 T
e rheMac3.chr5             183888314  0 + 184069350 C
e nomLeu3.chr7b            113979083  0 + 115148730 C

a score=1299.000000
s hg38.chr4_KI270925v1_alt    515875 3 +    555799 ATA
s panTro4.chr4             193236001 3 + 193495092 ATG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198309987 3 + 198332218 ATG
i ponAbe2.chr4             C 0 C 0
s calJac3.chr3             190741941 3 - 190850796 ATG
i calJac3.chr3             T 106 C 0
e mm10.chr8                 87912358 0 - 129401213 C
e canFam3.chr16             18178968 0 -  59632846 C
e chlSab2.chr7             135632532 0 + 135778131 C
e papAnu2.chr5             178698679 89 + 178775436 T
e macFas5.chr5             189281727 89 + 189454096 T
e rheMac3.chr5             183888314 0 + 184069350 C
e nomLeu3.chr7b            113979083 0 + 115148730 C

a score=22540.000000
s hg38.chr4_KI270925v1_alt    515878 31 +    555799 AGGAAG--ACAGCCTCAGAGGAGGCGTAGGAGG
s panTro4.chr4             193236004 31 + 193495092 AGGAAG--ACAGCCTCAGAGGAGACCTAGGAGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198309990 31 + 198332218 AGGAAG--ACGGCCTCGGAGGAGACATAGGAGG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113979083 33 + 115148730 AGGAAGACACAGCCTCAGAGGAGACATAGGAGA
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190741944 31 - 190850796 AAGAAG--ACAGCCTCAGAGGAGAAATAAGAGA
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87912358  0 - 129401213 C
e canFam3.chr16             18178968  0 -  59632846 C
e chlSab2.chr7             135632532  0 + 135778131 C
e papAnu2.chr5             178698679 89 + 178775436 T
e macFas5.chr5             189281727 89 + 189454096 T
e rheMac3.chr5             183888314  0 + 184069350 C

a score=11277.000000
s hg38.chr4_KI270925v1_alt    515909 11 +    555799 GCACAGCTTTC
s panTro4.chr4             193236035 11 + 193495092 GCACAGCTCTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198310021 11 + 198332218 GAACAGCTTTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113979116 11 + 115148730 GCGCAGCTTTC
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190741975 11 - 190850796 GCACAGCTTTC
i calJac3.chr3             C 0 T 47
s canFam3.chr16             18178968 11 -  59632846 GTACAGCATTT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87912358  0 - 129401213 C
e chlSab2.chr7             135632532  0 + 135778131 C
e papAnu2.chr5             178698679 89 + 178775436 T
e macFas5.chr5             189281727 89 + 189454096 T
e rheMac3.chr5             183888314  0 + 184069350 C

a score=27854.000000
s hg38.chr4_KI270925v1_alt    515920 16 +    555799 CCATGAGGAAG--ACAGC
s panTro4.chr4             193236046 16 + 193495092 CCATCAGGAAG--AGAGC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198310032 16 + 198332218 CCATGAGGAAG--ACGGC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113979127 18 + 115148730 CCATGAGGAGGACACAGC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183888314 16 + 184069350 CCATGAGGAAG--ACAGC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189281638 16 + 189454096 CCATGAGGAAG--ACAGC
i macFas5.chr5             T 89 C 0
s papAnu2.chr5             178698590 16 + 178775436 CCATGAGGAAG--ACAGC
i papAnu2.chr5             T 89 C 0
s calJac3.chr3             190741939 16 - 190850796 CTATGAAGAAG--ACAGC
i calJac3.chr3             T 47 C 0
s canFam3.chr16             18178979 11 -  59632846 GCTTGAGCACC-------
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87912358  0 - 129401213 C
e chlSab2.chr7             135632532  0 + 135778131 C

a score=20325.000000
s hg38.chr4_KI270925v1_alt    515936 7 +    555799 CTCAGAG
s panTro4.chr4             193236062 7 + 193495092 CTCAGAG
i panTro4.chr4             C 0 I 140
s ponAbe2.chr4             198310048 7 + 198332218 CTCAGAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113979145 7 + 115148730 CTCAGAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183888330 7 + 184069350 CTCGCAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189281654 7 + 189454096 CTCGCAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178698606 7 + 178775436 CTCGCAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135632532 7 + 135778131 CTCACAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190741955 7 - 190850796 CTCAGAG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18178990 7 -  59632846 CTGAGAG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87912358 0 - 129401213 C

a score=52450.000000
s hg38.chr4_KI270925v1_alt    515943 19 +    555799 GAGACATAGGAGGGCACAG
s panTro4.chr4             193236209 19 + 193495092 GAGACATAGGAGGGCACAG
i panTro4.chr4             I 140 C 0
s ponAbe2.chr4             198310055 19 + 198332218 GAGACATAGGAGAGCACAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113979152 18 + 115148730 GAGA-ATAGGAGGGCACAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183888337 19 + 184069350 GAGAAACAGGAGAGTACGG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189281661 19 + 189454096 GAGAAACAGGAGAGTACGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178698613 19 + 178775436 GAGAAACAGGAGAGTACGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135632539 18 + 135778131 GAGAAACAGGAGAG-ATGG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190741962 19 - 190850796 GAGAAATAAGAGAGCACAG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18178997 19 -  59632846 GAGAAATAGGATAGCATAG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87912358  0 - 129401213 C

a score=260824.000000
s hg38.chr4_KI270925v1_alt    515962 80 +    555799 CTTTCCCATGGCAAAGGGCTCAAGAAGACCT----GGACTCTGCTGTGAAGAAGGAAATTGTCCCA-----------GAAAGTCCAGAGCAAGAG
s panTro4.chr4             193236228 80 + 193495092 CTTTCCCATGGCAAAGGGCTCAAGAAGACCT----GCACTCTGCTGTGAAGAAGGAAATTGTCCCA-----------GAAAGTCCAGAGCAAGAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198310074 80 + 198332218 CTTTCCCATGGCAAAGGGCTCGAGAAGACCT----GGACTCTGCTGTGAAGAAGGAAATTGTCCCA-----------GAAAGTCCAGAGCAAGAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113979170 79 + 115148730 CTTTCCCATGGCAAATGGCTCAAGAAGACCT----GGACTCTGCTGTGAAGAAGGAAATCATCCCA------------AAAGTCCAGAGCAAGAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183888356 77 + 184069350 CTTTCCCACGGCAAAGGGC---AAGAGACCT----GAACTCTGCTGTGAAGAAGGAAATCGTCCCA-----------GAAAGTCTAGAGCTAGAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189281680 77 + 189454096 CTTTCCCACGGCAAAGGGC---AAGAGACCT----GAACTCTGCTGTGAAGAAGGAAATCGTCCCA-----------GAAAGTCTAGAGCTAGAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178698632 77 + 178775436 CTTTCCCACGGCAAAGGGC---AAGAGACCT----GAACTCTGCTGTGAAGAAGGAAATCGTCCCA-----------GAAAGTCTAGAGCTAGAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135632557 77 + 135778131 CTTTCCCATGGCAAAGGGC---AAGAGACCT----GAACTCTGCTGTGAAGAAGGAAATCGTCCCA-----------GAAAGTCTAGAGCTAGAG
i chlSab2.chr7             C 0 I 473
s calJac3.chr3             190741981 80 - 190850796 CTTTCCCATGGCTAAGGGCTCAAGAAAACCT----GAACACTGCTGTGAAGAAGGAAATTGTCTCA-----------GAAAGTCCAGGGCAAGAG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87912358 75 - 129401213 TTTCACCATAGTAGA-GAC---AAAGAACTT----AACATATGCT-TGAACTAGAAAACCTCCCCA-----------GAGAGACCAGGGCAAGAG
i mm10.chr8                C 0 C 0
s canFam3.chr16             18179016 95 -  59632846 CCTTCCTATGATCAAGGACTCAAGAAGAACTTATCGGCTCTTACTGTGAGCAAGAAAATCCCCTCACTCCCACCCTCAAATGTTCAGAGCTAGAG
i canFam3.chr16            C 0 C 0

a score=471729.000000
s hg38.chr4_KI270925v1_alt    516042 152 +    555799 TCCTCCCAAATTCTTTATCAGCTCATCCTAAGAGCTCACTGGATGGCTTCA--CGGGGGTCATTAAT-TCTTCTCCTCACTCAGGAGCTCTAGTCCACAAGTATCCAGTTTCACACACAGCTGCAAGACACTCCATTCTAGGGCCACAGTCCAGG
s panTro4.chr4             193236308 152 + 193495092 TCCTCCCAAATTCTTTATCAGCTCATCCTAAGAGCTCACTGGATGGCTTCG--CAGGGGTCATTAAT-TCTTCTCCTCACTCAGGAGCTCTAGTCCACAAGTATCCAGTTTCACACACAGCTGCAAGACACTCCATTCTAGGGCCACAGTCCAGG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198310154 154 + 198332218 TCCTCCCAAATTCTTTATCAGCTCATCCTAAAAGCTCACTGGATGGCTTCTGCGGGGGGTCATTAAT-CCTTCTCCTCACTCAGGAGCTCTAGTCCATAAGTATCCAGTTTCACACACAGCTGCAAGACACTCCATTCTAGGGCCACAGTCCAGG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113979249 154 + 115148730 TCCTCCCAAATTCTTTATCAGCTCATCCTAAGAGCTCACTGGATGGCTTCTGTGGGGGGTCATCAAT-CCTTCTCCTCACTTGGGAGCTCTAGTCCACAAGTGTCCAGTTTCACACACAGCTGCAAGACCCTCCATTCTAGGGCCACACTCCAGG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183888433 154 + 184069350 TCCTCCCAAATTCTTTATCAGCTCATCCTAAGAGCTCACTGGATGGCTTCTGCGGGGGGTCATTAAT-CCTTCTCCTCCCTCGGCAGCTCTAGTCCACAAGTATCCAGTTTCACACGCAGCTGCAAGACACTCCACTCCACGGCCACAGTCCAGG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189281757 154 + 189454096 TCCTCCCAAATTCTTTATCAGCTCATCCTAAGAGCTCACTGGATGGCTTCTGCGGGGGGTCATTAAT-CCTTCTCCTCCCTCGGCAGCTCTAGTCCACAAGTATCCAGTTTCACACGCAGCTGCAAGACACTCCACTCCACGGCCACAGTCCAGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178698709 154 + 178775436 TCCTCCCAAATTCTTTATCAGCTCATCCTAAGAGCTCACTAGATGGCTTCTGCGGGGGGTCGTTAAT-CCTTCTCCTCCCTCGGCAGATCTAGTCCACAAGTATCCAGTTTCACACGCAGCTGCAAGACACTCCACTCCACGGCCACAGTCCAGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135633107 154 + 135778131 tcCTCCCAAATTCTTTATCAGCTCATCCTAAGAGCTCACTGGATGGCTTCTGCGGGGGGTCATTAAT-CCTTCTCCTCCCTTGGCAGCTCTAGTCCACAAGTATCCAGTTTCACACGCAGCTGCAAGACATTTCATTCCACGGCCACAGTCCAGG
i chlSab2.chr7             I 473 C 0
s calJac3.chr3             190742061 104 - 190850796 CTCTCCCAAATTCTTTATCGGCTCATCCTAAGCATCCATTGGATGCTTTCCGCTGGGTGTCATTAAT---------------------------------------------------AGCTGCAAGACACTTCATTCTAGGGCCACAGTTCAGG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87912433 132 - 129401213 TGCTCCC-ACTTCACCATCAGCTCGTCTTACAGATTCTTTTCA--GTGTCCTCAGGAGCT--------------------TCAGAGGCTCTGGACCACTGTAGTCCAGCCGCAAACCAACCTACTAGACACAGCACTGTAGATTCCCAGGCAAGG
i mm10.chr8                C 0 I 4515
s canFam3.chr16             18179111 154 -  59632846 TTCTGCCAAATTCTTTATCAACTCATCCTAGGAGTTCCCTGCATCCCTTCTGCTCAGTGTCATTAAAGGCTTCCTCACACTCGGTGGCTCCGGCCCACAAGAATCCAGTGTCACATATACCTGCAAGAGACTCCATTCTGGATGCAT-GTCCAAG
i canFam3.chr16            C 0 C 0

a score=460425.000000
s hg38.chr4_KI270925v1_alt    516194 144 +    555799 ATGCAGTCTTCACAGATTTTTTGATCAAATGGATCAAGAGTAGAGGGTCTGTCCATGAATAATAAAACATAGGGAGGAAATAAGACACATAGAATGGAATTCTCTCTTTGGGTTGAGAATATATATACCCAATAATTCTTTTTT
s panTro4.chr4             193236460 144 + 193495092 ATGCAGTCTTCACAGATTTTTTGATCAAATGGATCAAGAGTAGAGGGTCTGTCCATGAATGATAAAACATAGGGAGGAAATAAGACACATGGAATGGAATTCTCTCTTTGGGTTGAGAATATATATACCCAATAATTCTTTTTT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198310308 144 + 198332218 ATGCAGTCTTCACAGATTTTTTGATGAAATGAATCAAGAGTAGAGGGTCTGTCCATGAATAATAAAACATAGGGAGGAAATAAGACACATGGAATGGAATTCTTTCTTTGGGTTGAGAATGTATATACCCAATAATTCTTTTTT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113979403 144 + 115148730 ATGCAGTCTTCACAGATTATTTGATCAAATGGATCAAGAGTAGAGGGTCTGTCCCTGAATAATAAAACATAGGGAGGAAATAAGACACATGGAACGGAATTCTCTCATTGGGTTGAGAATATATATACCCAATAATTCTTTTTT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183888587 142 + 184069350 ACGCAGTCTTCACAGACTTTTTGATCAAATGGATCAAGAGTAGAGGGTCTGTCCATGAATAATAAAACATAGGGAGGAAATAAGGCCCATGGAACGGAG-TCTCTCGTTGGGTTGAGAATATATATACCCAAATATTC-TTTTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189281911 142 + 189454096 ACGCAGTCTTCACAGACTTTTTGATCAAATGGATCAAGAGTAGAGGGTCTGTCCATGAATAATAAAACACAGGGAGGAAATAAGGCCCATGGAACGGAG-TCTCTCGTTGGGTTGAGAATATATATACCCAAATATTC-TTTTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178698863 142 + 178775436 ACGCAGTCTTCACAGACTTTTTGATCAAATGGATCAAGAGTAGAGGGTCTGTCCATGAATAATAAAACATAGGGAGGAAATAAGGCCCATGGAACGGAG-TCTCTCGTTGGGTTAAGAATATATATAcccaaatattc-ttttt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135633261 142 + 135778131 ATGCAGTCTTCACAGACTTTTTGATCCAATGGATCAAGAGTAGAGGGTCTGTCCATGAATAATAAAACATAGGGAGGAAATAAGGCCCATGGAACGGAC-TCTCTCGTTGGCTTGAGAATATATATACCCAAATATTC-TTTTT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190742165 144 - 190850796 ATGCAGTGTTCACAATTTTTTTAATCAAATGAATCAAGAGTAGAGGGTCTGTCCATGAATAATACAACATAGGGAGGAAATAAGTCACACAGAATGGAATTCTCTCATTGGGTTGAGAATGTATACACCCAATACTTCTTTTTT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18179265 139 -  59632846 TTGCAATCATCACTAATCTCTCAGTAAAACTGGTCAAGAGTAGTAGATCTGCCCATCAATAATTAAGTATAGGGAGTAAATAAAATATATGGAATGGAATTGTCTCATTGTGTTGAAAATACATAT-----AGTATTCTTTTTT
i canFam3.chr16            C 0 I 2245
e mm10.chr8                 87912565 4515 - 129401213 I

a score=1221225.000000
s hg38.chr4_KI270925v1_alt    516338 451 +    555799 TATTCCTTtgtaggggaagaaaggtttcttttcctcacccatcactaggactatggccgatgcccctgtaacaaagtacagat---tgagagaaaagtgtacacatgtatttaaaaagctttatgtggcacaggagtcttcataagaaaatgacccaaagaaacaggaaatcttgtgtatcatagtgcttagttaggttggatgaacagtggact-caggt----attggtacaattggacagagtgagtatgctctcatggagataaactgggggaacttagcaaggcctgtgtgttcaaattcttctctgtgtccctgtgtcttcagagataaggatgtttctttcttctgggtataaggactcttcctctcaaatgaggtcttatgatctgctcct---------ggggggtcagagagtgacctgcctgcatctgcttcttctcaaatgccACTTG------------TGATGCCC
s panTro4.chr4             193236604 455 + 193495092 TATTCCTTtgtaggggaagaaaggtttcttttcctcacccatcactaggactatggccgatgcccctgtaacaaagtacagattaatgagagaaaagtgtacacatgtatttaaaaagctttatgtggcacaggagtcttcataagaaaatgacccaaagaaacaggaaatcttgtgtatcatagtgcttagttaggttggatgaacagtggactccaggt----attggtacaattggacagagtgagtatgctctcatggagataaactaggggaacttagcaaggcctgtgtgttcaaattcttctctgtgtccctgtgtcttcagagatacggatgtttctttcttctgggtataagaactcttcctctcaaatgaggtcttatgatctgctcct---------ggggggtcagagagtgaccagcctgcatctgcttcttctcaaatgccACTCG------------TGATGCCC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198310452 455 + 198332218 TATTCCTTtgtaggggaagaaaggtttcttttcctcacccatcactaggactatggccaacgcccctgtaacaaaatacagattaatgagagaaaagtgtacacatttatttaaaaagctttatgtggcacaggagtcttcataagaaaatgacccaaagaaacaggaaaccttgtgtatcatagtgcttagttaggttggatgaacagtggacgccaggt----attggtacaactggacagagtgagtatgctctcgtggagataaactgggggaacttagcaaggcctgtgtcttcaaattctactctgtgtccttgtgtcttcagagataaggacgtttctttcttctgagtataaggactgtttgtctcaaatgaggttttatgatctgctcct---------gggggggcagagagtgtcctgcctgcttctgcttcttctcaaatgccACTTG------------TGATGCCC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113979547 467 + 115148730 TATTCCTTtgtaggggaagaaaggtttcttttccttacccatcactaggattatggcccatgcccctgtaacaaagcacagattaacgagagaaaagcatacacatttatttaaaaagctttatgtggcacaggagtcttcataagaaaatgacccaaagaaacaggaaaccttgtgtatcatagtgcttagttaggttggatgaaccgtggacaccaggg----actggtacaattgggcagagtgagtatgctctcatggagataaactgggggaacttagcaaggcctgtgtgttcaaattcttctctgtgtccctctgtcttcggagataaggatgtttctttcttccgggtataaggactgttcctctcaaatgaggtcttatgatctgctCCT---------GGGGGGACAGAGAGTGACCTGCCTGCTTCTGCTTCTTCTCAAATGCCGCTTGAGTTATCTCAGCTGATGCCC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183888729 469 + 184069350 CATTCCTTtgtagggcaagaaaggtttcttttcctcacccatcactaggcctgcggccgatgcccctgtaacaaagtactgatcaaggagagaaaagcatacacgtttatttaaaaacttttatgtggcacaggagtcttcataagaaaatgacccaaagaaacaggaaaccttgtgtatc-ttgtgcttagttaggtttgatgagcagtggacgccatggtggggggggtacaattggacacagtgggtatgctgtcatggagatgaactgggggaacttagcaagacctgtgtgttcagattcttctctgtgtccttgtgtcttcagagataaggatgtttctttcttctgggtataaggactgttcctctgaaaggaagtcttatgatctgctcct----------gggaggcagagagtgacctgcctgcttctgcttcttctcaaatgccACTTGAGTTATCTCAGCTGATGCCC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189282053 466 + 189454096 CATTCCTTtgtagggcaagaaaggtttcttttcctcacccatcactaggcctgcggccgatgcccctgtaacaaagtactgatcaaggagagaaaagcatacacgtttatttaaaaacttttatgtggcacaggagtcttcataagaaaatgacccaaagaaacaggaaaccttgtgtatc-ttgtgcttagttaggtttgatgagcagtggacgccatggc---ggggttacaattggacacagtgggtatgctgtcatggagatgaactgggggaacttagcaagacctgtgtgttcagattcttctctgtgtccttgtgtcttcagagataaggatgtttctttcttctgggtataaggactgttcctctgaaaggaagtcttatgatctgctCCT----------GGGAGGCAGAGAGTGACCTGCCTGCTTCTGCTTCTTCTCAAATGCCACTTGAGTTATCTCAGCTGATGCCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178699005 462 + 178775436 cattcctttgtaGGGCAAGAAAGGTTTCTTTTCCTCACCCATCACTAGGCCTGCGGCCGATGCCCCCGTAACAAAGTACTGATC---GAGAGAAAAGCATACacgtttatttaaaaagttttatgtgGCACAGGAGTCTTCATAAGAAAATgacccaaagaaacaggaaacCTTGTGTATC-TTGTGCTTAGTTAGGTTTGATGAGCAGTGGACGCCATGG----ATGGGTACAATTGGATACAGTGGGTATGCTGTCACGGAGATGAACTGGGGGAACTCAGCGAGGCCTGtgtgttcagattcttctctgtgtccctgcgtcttcagagataaggatgTTTCTTTCTTCTGGGTATAAGGACTGTTCCTCTGAAAGGAGGTCTTATGATCtgctcct----------gggaggcagagagtgacctacctgcttctgcttcttctcaaATGCCACTTGAGTTATCTCAGCTGATGCCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135633403 472 + 135778131 CATTCCTTtgtagggcaagaaaggtttcttttcctcacccatcactaggcctgtggctgatgcccccgttacaaagtactcatcaatgagagaaaagcatacatgtttatttaaaaagttttatgtggcacaggagtcttcataagaaaatga-ccaaagaaacaggaaaccttgtgtatc-ttgtgcttagttaggtttgatgagcagtggacaccatgg----gcgggtacaattggacacagtgggtatgctgtcacggagatgaaccgggggaacttagcaaggcctgtgtgttcagattcttctctgtgttcctgagtcttcagagataaggatgtttctttcttctgggtataaggactgttcctctgaaaggaggtcttatgatctgctcctggggg--gtgggggggcagagagtgacctgcctgcttctgcttcttctcaaatgccACTTGAGTTATCTCAGCTGATGCCC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190742309 429 - 190850796 TATTCCTTTGTACGGTaaaaacgatgtttttcccccacccatcaccaggattatgggcgatgcccctgtaacaaagtacagattaacaagagaaaagcatacacatttatttaaaaagttttctgtggcacaggagtcttcataagaaaatggcccaaag-aacaggaaa-cttgtgtatcgtag-gcttagttaggtttgatgaacagtggccgccatgg----aatggtagaatcggacagagtgtgtgtgctctcacggagataaactgggggaactcagcaaggc-----------------------------tgtgtcttcagaGATAAGGATGCTTCTTTCT--------TAAA-------CCCCTCAAACAAGGGCTTATGACCTGCTCCCGGGATTCGGGGGTGGGCAGAGAGCGACCTTCCTGCTCCTGCTTTTTCTCAAATGCCACTTGGGTTATCTCAGCTGATGCCC
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87912565 4515 - 129401213 I
e canFam3.chr16             18179404 2245 -  59632846 I

a score=295200.000000
s hg38.chr4_KI270925v1_alt    516789 87 +    555799 TTCCTGGGAGACAAAGCCATCTTTGAGTATTTCAGGATTCCAAAATAGACTCCATTCCTTGGATT-----TACCAAAAGCACCAGCCTAAAG
s panTro4.chr4             193237059 87 + 193495092 TTCCTGGGAGACAAAGCCATCTTTGAGTATTTCAGGATTCCAAAATAGACTCCATTCCTTGGATT-----TACCAAAAGCACCAGCCTAAAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198310907 87 + 198332218 TTCCTGGGAGACAAAGCCATCTTTGAGTATTTCAGGATTCCAAAATAGACTCCATTCCTTGGATT-----TACCAAAAGCACCAGCCTAAAG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113980014 87 + 115148730 TTCCTGGGAGGCAAAGCCATCTTTGAGTATTTCAAGATTCCAAAATAGACTCCGTTCCTTGGATT-----TACCAAAAGCACCAGTCTAAAG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183889198 87 + 184069350 TTCCTGGGAGACAAAGCCCTCTTTGAGTATTTCAGGATTCCAAAATAGACTCCATTCCTTGGATT-----TACCAAAAGCACTAACCTAAAG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189282519 87 + 189454096 TTCCTGGGAGACAAAGCCCTCTTTGAGTATTTCAGGATTCCAAAATAGACTCCATTCCTTGGATT-----TACCAAAAGCACTAACCTAAAG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178699467 87 + 178775436 TTCCTGGGAGACAAAGCCCTCTTTGAGTATTTCAGGATTCCAAAATAGACTCCATTCCTTGGATT-----TACCAAAAGCACTAACCTAAAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135633875 87 + 135778131 TTCCTGGGAGACAAAGCCCTCTTTGAGTATTTCAGGATTCCAAAACAGACTCCATTCCTTGGATT-----TACCAAAAGCACCAGCCTAAAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190742738 92 - 190850796 TTCCCGGGAGACAAAGCCAGCTTTGAGAATTTTAGGGTTCTAAAATCAACTCCATTGTTTGGATTGGAGCTGCCTAAAGCAGCAGCCTAaag
i calJac3.chr3             C 0 I 2493
s canFam3.chr16             18181649 83 -  59632846 TCCTTGGGAGGTAAAGCCATTTTTAAGAGTTTCGTGATTGCATAACACGCTCCTTTCC-TGAATT-----TACCAAAAGCAC---CCTAAAA
i canFam3.chr16            I 2245 C 0
e mm10.chr8                 87912565 4515 - 129401213 I

a score=616870.000000
s hg38.chr4_KI270925v1_alt    516876 226 +    555799 GGCCTGTCAGGAAGTTCACCAGAAAGAGAAACCTATTTCCCTGTAAGGGAAGTGGCTGGATGGTCCCGCC------CCAGATTCTCTGATGTGGACCTCACTTGGGATGCAACCCTGGTACAGC--TCCTCCATCTCAGTCATTAGAAGTAAGTTCATTGAAAATGGTCTTCTGATA-CAGTCATTGCTGAATTGCAGTTTCAACTAATTATACCCCTCAGAATCTCCTTGAATT
s panTro4.chr4             193237146 232 + 193495092 GGCCTGTCAGGAAGTTCACCACAAAGAGAAACCTATTTCCCTGTAAGGGAAGTGGCTGGATGGTCCCCCCCCCCCGCCAGATTCTCTGATGTGGACCTCACTTGGGATGCAACCCTGGTACAGC--TCCTCCATCTCAGTCATTAGAAGTAAGTTCAATGAAAATGGTCTTCTGATA-CAGTCATTGCTGAATTGCAGTTTCAACTAATTATACCCCTCAGAATCTCCTTGAATT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198310994 226 + 198332218 GGCCTGTCAGGAAGTTCACCAGAAAGAGAAACCTATTTCCCTGTAAGGGAAGTGGCTGGATGGTCCAGCC------CCAGATTCTCTGATGTGGACCTCAAGTGGGATGCAACCCTGGTACAGC--TCCTCCATCTCAGTCATTAGAAGTAAGTTAAACAAAAATGGTCTTCTGATA-CAGTCATTGCTTAATTGCAATTTCAACTAATTATACCCCTCAGAATCTCCTTGAATT
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113980101 226 + 115148730 GGCCTGTCAGGAAGTTCACCAGAAAGAGAAACCTATTTCCCTGTAAGGGAAGTGGCTGGATGGTCTCGCC------CCAGATTCTCTGATGTGGACCTCACCTGGGATGCAACCCTGGTACAGC--TCCTCTGTCTCAGTCATTAGAAGTAAGTTAAATGAAAATGGTCTTCTGATA-CAGTCATTGCTTAATTGCAATTTCAACTAATTATACCCCTCAGAATCTCCTTGAATT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183889285 226 + 184069350 GGCCTGTCGGGAAGTTCACCAGAAAGAGAAACCTATTTCCCTGTAAGGGAAGCGGCTGGATGGTCCCGCC------CCAGATTCTCTGATGGGGACCTCACGTGGGATACAGCCCTGGTACAGC--TCCTCTGTCTCAGTCATTAGAAGTAAGTTAAATGAAAGTGGTTTTCTGATA-TAGTAATTGCTTAATTGCAATTTCAACTAATTATACCCCTCAGAATCTCCTTGAATT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189282606 226 + 189454096 GGCCTGTCGGGAAGTTCACCAGAAAGAGAAACCTATTTCCCTGTAAGGGAAGCGGCTGGATGGTCCCGCC------CCAGATTCTCTGATGGGGACCTCACGTGGGATACAGCCCTGGTACAGC--TCCTCTGTCTCGGTCATTAGAAGTAAGTTAAATGAAAGTGGTTTTCTGATA-TAGTAATTGCTTAATTGCAATTTCAACTAATTATACCCCTCAGAATCTCCTTGAATT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178699554 227 + 178775436 CGCCTGTCGGGAAGTTCACCAGAAAGAGAAACCTATTTCCCTGTAAGGGAAGCGGCTGGATGGTCCCGCC------CCAGATTCTCTGATGGGGACCTCACGTGGGATACAGCCCTGGTACAGC--TCCTCTGTCTCGGTCATTAGAAGTAAGTTAAACGAAAGTGGTTTTCTGATACTAGTAATTGCTTAACTGCAATTTCAACTAATTATACCCCTCAGAATCTCCTTGAATT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135633962 226 + 135778131 GGCCTCTCGGGAAGTTCACCAGAAAGAGAAACCTATTTCCCTGTAAGGGAAGCGGCTGGATGGTCCCGCC------CCAGATTCTCTGATGGGGACCTCACGTGGGATACAGCCCTGGTACAGC--TCCTCTGTCTCGGTCATTAGAAGTAAGTTAAACGAAAGTGGTTTTCTGATA-TAGTCATTGCTTAATTGCAATTTCAACTAATTATACCCCTCAGAATCTCCTTGAATT
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             18181732 224 -  59632846 GGCACTTCCTGAAATTCACTAGAGAGAGATACCCACTTCTTTGTAAGGAAAAGGGCTGGA----CCCACC------ATAGATTCTCTGACTTGGAGTTCACAAGAGTTACAATCCAGTGACAGTTATCTCCTCTCTCTGTCATTAGAAATAAGCCAAATGAAGTTTGCCCCCTGAAA-TATGCATTGCTTAATGGCAATTTCAACAATGTATACCCTTCTGTATCTCCTTTATTC
i canFam3.chr16            C 0 I 49
e mm10.chr8                 87912565 4515 - 129401213 I
e calJac3.chr3             190742830 2493 - 190850796 I

a score=790020.000000
s hg38.chr4_KI270925v1_alt    517102 363 +    555799 CTAACAACTAAGTAACTAAATGTCTACTAAGTACCTATAATTGTGCTGTCAAGAGTAATAAGTGAggccaggcacggtggctctcgcctgtaatcctggcactctgggaggccaaggcgagtggatcacttgaggtcaggagtttgagaccagcctggccaacatggtgaaacgctgtctctactaaaattacaaaaattagctgggcgtggtggagggtgcctgtagtcccagctgttagggaggctgaggcaggagaatcacttgcacccaggaggcggaggttgcagtgagccaagattgcgccattgcaccccagcctgggcgacagagcgagactctgtgtcatt-----taaaaaaaaaaaa
s panTro4.chr4             193237378 363 + 193495092 CTAACAACTAAGTAACTAAATGTCTACTAAGTACCTATAATTGTGCTGTCAAGAGTAATAAGTGAggccaggcacggtggctctcgcctgtaatcctggcactctgggaggccaaggcgagtggatcacttgaggtcaggagtttgagaccagcctggccaacatggtgaaaccctgtctctactaaaattacacaaattagctgggcgtggtggagggtgcctgtagtcccagctgttagggaggctgaggcaggagaatcacttgcacccaggaggcggaggttgcagtgagccaagattgcaccattgcactccagcctgggcgacagagcgagactctgtgtcatt-----taaaaaaaaaaaa
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198311220 363 + 198332218 CTAACAACTAAGTAACTAAATGTCTACTAAGTACCTGTAATTGTGCTGTCAAGAGTAATAAGTGATgccaggcacggtggctctcacctgtaatcctggcactctgggaggccaaggcgggtggatcacttgaggtcaggagtttgagaccagcctggccaacatggtgaaaccctgtctccactaaaattacaaaaattagctgggcgtggtggagggcacctgtagtcccagctacttgggaggctgaggcaggagaatcacttgcactcaggaggcggaggttgcagtgagccaagatcacgccattgcactccagcctgggtgacagagtgagactctgtgtcatt-----aaaaaaaaaaaaG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113980327 358 + 115148730 CT----ATTCAATAACTAAATGTCTACTAAGTACCTATAATTGTGCTTTCAAGAGTAAAAACTGAggcctagcacggtggctcacacc-gtaatcccggcactctgggaggccaaggcgggtgggtcacttgaggtcaggagtttcagaccatcctgaccaacatggcaaaacccagtctctcctaaaattacaaaaattagccaggcatggcggtgcatgcctgcagtcccagctactcaggaggctgaggtaggagaatcacttgaatccaggaggcagaggttgcagtgagccaagatcacactattgcactccagcctgggtgacagagtgagactctgtctcatt-----aaagaaaaaaaaa
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183889511 364 + 184069350 CTAATAACTAAGTAACTAAATGTCTACTAAGTACCTATAATTGTGCTATCAAGAGTAACAAGTGAggccaggtgcagtggctcatacctgtaatcccagcgctctgggaggccaagacaggtggatcacttgaggtcaggagtttgagaccagcctggccaacatggcaaaacccggtctctactaaaattaccaaaattagctgggcatggtgccgggcgcctgtagtcccagctactcgggaggctgaggtaggagaatcacttgaacccaggaggaggaggtctcaatgagccaagatcacgccattgcactccagcctgggcgacagagggagac----tctcatttaaaaaaaaaaacaaaaa
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189282832 364 + 189454096 CTAATAACTAAGTAACTAAATGTCTACTAAGTACCTATAATTGTGCTATCAAGAGTAACAAGTGAggccgggtgcagtggctcatacgtgtaatcccagcactctgggaggccaagacaggtggatcacttgaggtcaggagtttgagaccagcctggccaacatggcaaaacccggtctctactaaaattaccaaaattagttgggcatggtgccgggcgcctgtagtcccagctactcgggaggctgaggtaggagaatcacttgaacccaggaggtggaggtttcaatgagccaagatcacgccattgcactccagcctgggcgacagagggagac----tctcatttaaaaaaaaaaacaaaaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178699781 354 + 178775436 C-----------TAACTAAATGTCTACTAAGTACCTATAATTGTGCTATCAAGAGTAATAAGtgaagccgggtgcagtggctcacacctgtaatcccagcactctgggaggccaaggcaggtggatcacttgaggtcaggagtttgagaccagcctggccaacatggcaaaacccggtctctaccaaaattaccaaaattagctgggcatggtaccaggcacctgtagtcccagccattcgggaggctgaggtaggagaatcacctgaacccaggaggcggaggtttcaatgagccaagatcacgccattgcactccagcctgggcgacagagggagactctgtctcatt---aaaaaaaaaaaaaaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135634188 364 + 135778131 CTAATAACTAAGTAACTAAATGTCTACTAAGTACCTGTAATTGTGCTATCAACAGTAATAAGTGAggccgggtgcagtggctcacacctgtaatcccagcactctgggaggccaaggcaggtggatcacttgaggtcaggagtttgagaccagcctggccaacatggcaaaacccggtctctaccaaaattaccaaagttagctgggcatggtaccgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatcacttgaacccaggaggcggaggtttcagtgagccaagatcacgccattgcactccagcctgggcgacagaaggagactctgtctcatt----aaaaaaaaaaaaaa
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87912565 4515 - 129401213 I
e canFam3.chr16             18181956  49 -  59632846 I
e calJac3.chr3             190742830 2493 - 190850796 I

a score=1116854.000000
s hg38.chr4_KI270925v1_alt    517465 462 +    555799 aG---------------AGTAATAAGTGAATAATATGCAACATTATTCTTTCTACAGCTTCAT-ATGCGTTGCATTTACACATGTTCTTATG--TTTTTTATGAGACTTATATAGTGTGCAATGTGTATTTTCAACAGTGAAACTAAAAACTTCTCATGTGTCTTTCTTCTTTGGCCTT----------------AAAAATTATTTTTTATGCTAACTAAATCATCTACATTATTACTCTGTGCTAACTAACATAAATAAACTAGTACACTATTCTCATTTACCCAACTTTTTTATACCGTTCC--------------TACCAACAGTTCCAAATATAAGCTGTATTCATCATCAGTTAGTTCTAAAGagtttaggtgctcccccaatgtgctcctacagcaccctgaacctcctgcgtatgagctttgatcatcctgtattgaaatgagaaaatcctgcatttccactt-tgtgctaaccccagcataccacgtctgcagagtagagact
s panTro4.chr4             193237741 462 + 193495092 aG---------------AGTAATAAGTGAATAATATGCAACATTATTCTTTCTACAGCTTCAT-ATGTGTTGCATTTACACATGTTCTTATG--TTTTTTATGAGAATTATATAGTGTGCAATGTGTATTTTCAACAGTGAAACTAAAAACTTCTCATGTGTCTTTCTTCTTTGGCCTT----------------AAAAATTATTTTTTATGCTAACTAAATCATCTACATTATTACTCTGTGCTAACTAACATAAATAAACTAGTACACTATTCTCATTTACCCAACTTTTTTATACCGTTCC--------------TACTAACAGTTCCAAATATAAGCTGTATTCATCATCAGTTAGTTCTAAAGagtttaggcgctcccccaatgtgctcctacagcaccctgaacctcatgcgtatgagctttgatcatcctgtattgaaatgagaaaatcctgcatttccactt-tgtgctaaccccagcataccacgtctgcagagtagagact
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198311583 459 + 198332218 AG---------------AGTAATAAGTGAATAATATGCAACATTATTCTTTCTACAGCTTC---ATGTGTTGCATTTACACATGTTCTTATG---TTTTTATCAGAATTATATAGTGTGCAATGTGTATTTTCAACAGTGAGACTAAAAACTTCTCATGTGTCTTTCTTCTTTGGCCTT----------------AAAAATTATTTTTTATGCTAACTAAATCATCTACATTATTACTCTGTGCTAACTAACATAAATAAATTAGTACACTATTCTCATTTACCCCACTTTTTTATACTGTTCC--------------TACTAACAGTTCCAAATATAAGCTGCATTCATCATCAGTTAGTTCTAAAGagtttaggccctcccccaatgtgctcctacagcaccctgaacttcctgtgtatgagctttgatcatcttgtattgaaatgagaaaatcctgcatttccactt-tctgctaaccccagcataacacgtctgcagagtagggact
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113980685 476 + 115148730 aaaagaaaaagaaaaaCAGTAGCAAGGGAATAATATGCAATATTATTCTTTCTACAGCTTCAT-ATGCGTTGCATTTACCCATGTTCTTATG--TTTTTCATGAGAATTATATAGTGTGCAATGTGTATTTTCAACAGTGAGACTAAAAACTGCTCATGTCTCTTTCTTCTTTGGCCTT----------------AAAAATTATTTTTTATGCTAACTTAATCATCTACATTATTACTCTGTGCTAACTAACATAAATAAATTAGTACACTATTCTCATTTACCCAACTTTTTAATACCATTCC--------------TACTAACAGTTCCAAATATAAACTGTATTTATCATCAGTTAGTTCTAAAGagtttaggtgctcccccaatgtgctcctacagcaccccgaacttcctgtgtacgagctttgatgatcctgtatagaaatgagaaactcctgcatatccacttgtctgctaaccccagcataacacatctgcagagtaggga--
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183889875 453 + 184069350 aG---------------AGCAATAAGTGAATAATGTGCAATATTATTCTTTCTACAGCTTCCT-ACGCGTTGCATTTACATATGTTCTTATG--TTTTTTATGAGAATTATGTAGTGTGCAATGTGTCTTTTCAACAGTGAGACTAAAATCTTCTCATATC----TCTTCTTTGGCCTT----------------AAAAATTAATTTTGATGCTAAGTAATTCATCTACATTACTACTCTGTGCTAACTAACCTAAA-----TAGTACACTATTTTCATTTACCCAACGTTTTTATATCATTCC--------------TGCTAACAGTTCCAAACATAAGCTGTACTCATCATCAGTTAGTTCTAACGagtttaggtgctcccccaatgtgctctgacagcaccccgaacatcctgcgtacgagctttgatcatcctgtattgaaatgagaaaatcctgcatttccactt-tctgctaaccccagcgtaacacgtctgcacagtagggact
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189283196 453 + 189454096 aG---------------AGCAATAAGTGAATAATGTGCAATATTATTCTTTCTACAGCTTCCT-ACGCGTTGCATTTACATATGTTCTTATG--TTTTTTATGAGAATTATGTAGTGTGCAATGTGTCTTTTCAACAGTGAGACTAAAATCTTCTCATATC----TCTTCTTTGGCCTT----------------AAAAATTAATTTTGATGCTAAGTAATTCATCTACATTACTACTCTGTGCTAACTAACCTAAA-----TAGTACACTATTTTCATTTACCCAACGTTTTTATATCATTCC--------------TGCTAACAGTTCCAAACATAAGCTGTACTCATCATCAGTTAGTTCTAACGAGTTTAGGTGCTCCCCCAATGTGCTCTGACAGCACCCCGAACATCCTGCGTACGAGCTTTGATCATCCTGTATTGAAATGAGAAAATCCTGCATTTCCACTT-TCTGCTAACCCCAGCGTAACACGTCTGCACAGTAGGGACT
i macFas5.chr5             C 0 T 33
s papAnu2.chr5             178700135 453 + 178775436 ag---------------agtaataagtGAATAATGTGCAATATTATTCTTTCTACAGCTTCAT-ATGCGTTGCATTTACCTATGTTCTTATG--TTTTTTATGAGAATTATATAGTGTGCAATGTGTCTCTTCAACAGTGAGACTAAAATCTTCTCatgtctctttcttctttggccat----------------aaaaattactttttatgctAACTAATTCATCTACATTACTACTCTGTG----CTAACCTAAA-----TAGTACACTATTTTCATTTACCCAACTTTTTTATATCATTCC--------------TGCTAATAGTCCCAAACATAAGCTGTACTCAACATCAGTTAGTTCTAACGAGTTTAGGTGCTCCCCCAATGTGCTCCGACAGCAGCCCGAACATCCTGCGTACGAGCTTTGATCACCCTGTATTGAAATGAGAAAATCCTGCATTTCCACTT-TCTGCTAACCCCAGCACAACACGTCTGCAGAGTAGGGACT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135634552 457 + 135778131 ga---------------aGTAATAAGTGAATAATGTGCAATATTATTCTTTCTACAGCTTCAT-ATGCGTTGCATTTACTTATGTTCTTATG--TTTTTTATAAGAATTCTATAGTGTGCAATGTGTCTTTTCAACAGTGAGACTAAAATCTTCTCATGTCTCTTTCTTCTTTGGCCTT----------------AAAAATTATTTTTTATGCTAACTAATTCATCTACATTACTACTCTGTGCTAACTAACCTAAA-----TAGTACACTATTTTCATTTACCCAATTTTTTTATATCATTCC--------------TGCTAATAGTTCCAAACATAAGTTGTACTCATCATCAGTTAGTTCTAACGagtttaggtgctcccccaatgtgctccgacagcaccccgaacatcctgcgtacgagctttgatcatcctgtattgaaatGAGAAAATCCTGCGTTTCCACTT-TCTGCTAACCCCAGCACAACACATCTGCAGAGTAGGGACT
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             18182005 435 -  59632846 AG---------------GGAAATCAGTGAATAGTGTTCAATAGCATTCTTTCTACAACTTTGTGGTGTATTGCATTTATACAAGTTCTTATCACATTTTTATGAAGATTATACAGTGTACCATGTAT-TTTTCAACACCTATGCTTAAAACTCTCTATGCTTCTTCCTTCTT---CCTTACAAATTGTTTTTATGACAAATTGTTTTTTATGCTATCAAATACAACTAAAGTATTAGTCTATGCTAACTAACCCAGGTAAATCAGTATTCAATACTGAGTCACCCAACTTTTTTATTCCATTCCAGTTCCATAGGAAGTGCTACCTGCTGCAA--GTGAGATGTGTTCATTTTC----AGTTTTAAAGAAGGtagatagtcccccagtgggttcctatcacaccttgaacctcccaaataatagtactgatcatcctgtactgaaat----------tgtctttccattt-----------------------------------------
i canFam3.chr16            I 49 C 0
e mm10.chr8                 87912565 4515 - 129401213 I
e calJac3.chr3             190742830 2493 - 190850796 I

a score=25782.000000
s hg38.chr4_KI270925v1_alt    517927 20 +    555799 gtgtgtatcttactcatcct
s panTro4.chr4             193238203 20 + 193495092 gtgtgtatcttactcatcct
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198312042 20 + 198332218 gtgtgtatcttactcatcct
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113981161 20 + 115148730 gtgtgtatcttactcatcct
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178700588 20 + 178775436 GTGTGTGTCTTCCTCATCCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135635009 20 + 135778131 GTGTGTGTCTTCCTCATCCT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87912565 4515 - 129401213 I
e canFam3.chr16             18182440  0 -  59632846 C
e calJac3.chr3             190742830 2493 - 190850796 I
e macFas5.chr5             189283649 33 + 189454096 T
e rheMac3.chr5             183890328  0 + 184069350 C

a score=804.000000
s hg38.chr4_KI270925v1_alt    517947 3 +    555799 tga
s panTro4.chr4             193238223 3 + 193495092 tgc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198312062 3 + 198332218 tgc
i ponAbe2.chr4             C 0 C 0
s papAnu2.chr5             178700608 3 + 178775436 TAA
i papAnu2.chr5             C 0 T 56
s chlSab2.chr7             135635029 3 + 135778131 TAA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87912565 4515 - 129401213 I
e canFam3.chr16             18182440 0 -  59632846 C
e calJac3.chr3             190742830 2493 - 190850796 I
e macFas5.chr5             189283649 33 + 189454096 T
e rheMac3.chr5             183890328 0 + 184069350 C
e nomLeu3.chr7b            113981181 0 + 115148730 C

a score=7488.000000
s hg38.chr4_KI270925v1_alt    517950 49 +    555799 agttgcagtgcctgggacCCCAGCATACCACGTCTGCagagtagagacc
s panTro4.chr4             193238226 49 + 193495092 agtcgcagtgcctgggacCCCAGCATACCACGTCTGCAGAGTAGGGACT
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198312065 49 + 198332218 agtcgcggtgcctgggacCCCAGCATAACACATCTGCAGACTACGGACT
i ponAbe2.chr4             C 0 C 0
s canFam3.chr16             18182440  6 -  59632846 -------------------------------gtcagc------------
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87912565 4515 - 129401213 I
e calJac3.chr3             190742830 2493 - 190850796 I
e chlSab2.chr7             135635032  0 + 135778131 C
e papAnu2.chr5             178700611 56 + 178775436 T
e macFas5.chr5             189283649 33 + 189454096 T
e rheMac3.chr5             183890328  0 + 184069350 C
e nomLeu3.chr7b            113981181  0 + 115148730 C

a score=-4851.000000
s hg38.chr4_KI270925v1_alt    517999  39 +    555799 gtgtgtatcttactc----------------------accc----------------------------------------------ttgtagtcgcagtgcctggg
s panTro4.chr4             193238275 107 + 193495092 GTGTGTATCTTACTCATTTGCAGTCACAGTGCCTGGGACCCCAGCATACCACGTCTGCAGAGTAGGGACTGTGTGTATCTTACTCATTTGCAGTCACAGTGCCTGGG
i panTro4.chr4             C 0 C 0
s canFam3.chr16             18182446   2 -  59632846 ----------ta-----------------------------------------------------------------------------------------------
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87912565 4515 - 129401213 I
e calJac3.chr3             190742830 2493 - 190850796 I
e chlSab2.chr7             135635032   0 + 135778131 C
e papAnu2.chr5             178700611  56 + 178775436 T
e macFas5.chr5             189283649  33 + 189454096 T
e rheMac3.chr5             183890328   0 + 184069350 C
e nomLeu3.chr7b            113981181   0 + 115148730 C
e ponAbe2.chr4             198312114   0 + 198332218 C

a score=11711.000000
s hg38.chr4_KI270925v1_alt    518038 51 +    555799 accccagcataACACATCTGCAGAGTAGGGACTGTGTGTATCTTACTCATT
s panTro4.chr4             193238382 51 + 193495092 ACCCCAGCATACCACGTCTGCAGAGTAGGGACTGTGTGTATCTTACTCATT
i panTro4.chr4             C 0 C 0
s papAnu2.chr5             178700555 51 + 178775436 ACCCCAGCACAACACGTCTGCAGAGTAGGGACTGTGTGTGTCTTCCTCATC
i papAnu2.chr5             T 56 I 5
s canFam3.chr16             18182448 19 -  59632846 atctcaatataacatgtct--------------------------------
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87912565 4515 - 129401213 I
e calJac3.chr3             190742830 2493 - 190850796 I
e chlSab2.chr7             135635032  0 + 135778131 C
e macFas5.chr5             189283649 33 + 189454096 T
e rheMac3.chr5             183890328  0 + 184069350 C
e nomLeu3.chr7b            113981181  0 + 115148730 C
e ponAbe2.chr4             198312114  0 + 198332218 C

a score=4817.000000
s hg38.chr4_KI270925v1_alt    518089 19 +    555799 TGCAGTCACAGTGCCTGGG
s panTro4.chr4             193238433 19 + 193495092 TGCAGTCACAGTGCCTGGG
i panTro4.chr4             C 0 C 0
s papAnu2.chr5             178700611 19 + 178775436 TGCAGTGGCAGTGCCTGGG
i papAnu2.chr5             I 5 C 0
e mm10.chr8                 87912565 4515 - 129401213 I
e canFam3.chr16             18182467  0 -  59632846 C
e calJac3.chr3             190742830 2493 - 190850796 I
e chlSab2.chr7             135635032  0 + 135778131 C
e macFas5.chr5             189283649 33 + 189454096 T
e rheMac3.chr5             183890328  0 + 184069350 C
e nomLeu3.chr7b            113981181  0 + 115148730 C
e ponAbe2.chr4             198312114  0 + 198332218 C

a score=24532.000000
s hg38.chr4_KI270925v1_alt    518108 51 +    555799 ACCCCAGCATAACACATCTGCAGAGTAGGGACTGTGTGTATCTTACTCATC
s panTro4.chr4             193238452 51 + 193495092 ACCCCAGCATACCACGTCTGCAGAGTAGGGACTGTGTGTACCTTACTCATT
i panTro4.chr4             C 0 C 0
s macFas5.chr5             189283616 51 + 189454096 ACCCCAGCGTAACACGTCTGCACAGTAGGGACTGTGTGTGTCTTCCTCATC
i macFas5.chr5             T 33 I 2
s papAnu2.chr5             178700630 51 + 178775436 ACCCCAGCGTAACACGTCTGCACAGTAGGGACTGTATGTGTCTTCCTCATC
i papAnu2.chr5             C 0 T 70
s canFam3.chr16             18182467 26 -  59632846 ------------------tgcagagtaagaaatttgtctatttt-------
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87912565 4515 - 129401213 I
e calJac3.chr3             190742830 2493 - 190850796 I
e chlSab2.chr7             135635032  0 + 135778131 C
e rheMac3.chr5             183890328  0 + 184069350 C
e nomLeu3.chr7b            113981181  0 + 115148730 C
e ponAbe2.chr4             198312114  0 + 198332218 C

a score=24180.000000
s hg38.chr4_KI270925v1_alt    518159 20 +    555799 TGCAGTCGCAGTGCCTGGGA
s panTro4.chr4             193238503 20 + 193495092 TGCAGTCACAGTGCCTGGGA
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113981181 20 + 115148730 tgcagtcgcagtcactggga
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189283669 20 + 189454096 TGCAGTGGCAGTGCCTGGGA
i macFas5.chr5             I 2 T 40
s papAnu2.chr5             178700611 20 + 178775436 TGCAGTGGCAGTGCCTGGGA
i papAnu2.chr5             T 70 C 0
s chlSab2.chr7             135635032 20 + 135778131 TGCAGTGGCAGTGCCTGGGA
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87912565 4515 - 129401213 I
e canFam3.chr16             18182493  0 -  59632846 C
e calJac3.chr3             190742830 2493 - 190850796 I
e rheMac3.chr5             183890328  0 + 184069350 C
e ponAbe2.chr4             198312114  0 + 198332218 C

a score=25050.000000
s hg38.chr4_KI270925v1_alt    518179 30 +    555799 CCCCAGCATAACACGTCTGCagagtaggga
s panTro4.chr4             193238523 30 + 193495092 CCCCAGCATAACACATCTGCagagtaggga
i panTro4.chr4             C 0 C 0
s nomLeu3.chr7b            113981201 30 + 115148730 cCCCAGCATAACACGTCTGCAGTGTAGGGA
i nomLeu3.chr7b            C 0 C 0
s papAnu2.chr5             178700631 30 + 178775436 CCCCAGCGTAACACGTCTGCACAGTAGGGA
i papAnu2.chr5             C 0 I 2
s chlSab2.chr7             135635052 30 + 135778131 CCCCAGCACAACACGTCTGCagaataggga
i chlSab2.chr7             C 0 I 2
e mm10.chr8                 87912565 4515 - 129401213 I
e canFam3.chr16             18182493  0 -  59632846 C
e calJac3.chr3             190742830 2493 - 190850796 I
e macFas5.chr5             189283689 40 + 189454096 T
e rheMac3.chr5             183890328  0 + 184069350 C
e ponAbe2.chr4             198312114  0 + 198332218 C

a score=119369.000000
s hg38.chr4_KI270925v1_alt    518209 50 +    555799 gtgtgtatcttactcatcct---tgcagtcgcagtgcctgggataggtgctca
s panTro4.chr4             193238553 50 + 193495092 gtgtgtatcttactcatcct---tgcagtcgcagtgcctgggataggtgctca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198312114 50 + 198332218 GTGTGTATCTTACTCATCCT---TACAGTCATGGTGCCTGGGATAGGTGCTCA
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113981231 50 + 115148730 GTGTGTATCTTACTCATCCT---TGCAGTCGCAGTGCCTGGGATAGGTGCTCA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183890328 50 + 184069350 gtgtgtgtcttcctcatcct---tgcagtggcagtgcctgggataggtgctca
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189283649 50 + 189454096 GTGTGTGTCTTCCTCATCCT---TGCAGTGGCAGTGCCTGGGATAGGTGCTCA
i macFas5.chr5             T 40 C 0
s papAnu2.chr5             178700663 50 + 178775436 GTATGTGTCTTCCTCATCCT---TGCAGTGGCAGTGCCTGGGATAGGTGCTCA
i papAnu2.chr5             I 2 C 0
s chlSab2.chr7             135635084 53 + 135778131 gtgtgtgtcttcctcatccttaatgcagtggcagtgcctggcataggtgctca
i chlSab2.chr7             I 2 C 0
s canFam3.chr16             18182493 36 -  59632846 --------------catcat---tgccatcccactacctcaggtaaataatcg
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87912565 4515 - 129401213 I
e calJac3.chr3             190742830 2493 - 190850796 I

a score=1189337.000000
s hg38.chr4_KI270925v1_alt    518259 387 +    555799 gttgctgaatgGCCACAGCCCGTGT------GTTC----TTTCTGTAGTGTGTGTCTCATTCAGAGGCTCAG-CTGCAGACACAGGCTGAACTTT-ACACAAACTTCTTTCCCACCAGTCTGTTTCAAAGGAGCTCAACCATGCCCCAACATACTTTGACCCTTTTCAGTATCAATTTTCAACTGC-TGTTTTCTACTCCTTGAAAGCATAACAAATAAAAGAACTTTTCTTTTTCAGTAAATT-CTGAAACATAATTACCTTACCAGTCATGCCAAGTGAATCTCATTAAGCTCTTTTGATTAAGATAATGCTAATTCATAAAAGAAAGT-------ATCCTAAA--------TTTAACAAACAGGAAAAATCAGGGACTTGTCTAATTCAACTCACAAAATTGAGCCACGTTTC
s panTro4.chr4             193238603 387 + 193495092 gtTGCTGAACGGCCACAGCCCGTGT------GTTC----TTTCTGTAGTGTGTGTCTCATTCAGAGGCTCAG-CTGCAGACACAGGCTGAACTTT-ATACAAACTTCTTTCCCACCAGTCTGTTTCAAAGGAGCTCAACCATGCCCCAACACACTTTGACCCTTTTCAGTATCAATTTTCAACTGC-TGTTTTCTACTCCTTGAAAGCATAACAAATAAAAGAACTTTTCTTTTTCAGTAAATT-CTGAAACATAATTACCTTACCAGTCATGCCAGGTGAATCTCATTAAGCTCTTTTGATTAAGATAATGCTAATTCATAAAAGAAAGT-------ATCCTAAA--------TTTAATAAACAGGAAAGATCAGGGACTTGTCTATTTCAACTCACAAAATTGAGCCACGTTTC
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198312164 394 + 198332218 GTTGCTGAATGGCCACAGCCCGTGT------GTTC----TTTCTGTAGTGTGTGTCTCATTCAGAGGCTCAG-CTGCAGACACAGGCTGAACTTCGACACAAACTTCTTTCCCACCAGTCTGTTTCAAAGGAGCTCAGCCATGCCCCAACACACTTTGACCCTTTTCAGTATCGATTTTCAACTGC-TGTTTTCTACTCCTTGAAAACATAACAAATAAAA-AACTTTTCTTTTTCAGTAAATT-CTGAAACATAATTACCTTACCAGTCATGTCGGGTGAATCTCATTAAGCTCTTTTGATTAAGGTAATGCTAATTCATAAAAGAAAGT-------ATACAAAATTCTGGC-TTTAACAAACAGGAAAGATTAGGGACTTGTCTAATTCAACTCACAAAATTGAGCCACGTTTC
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113981281 393 + 115148730 GTTGCTGAATGGCCACGGCCCGTGT------GTTC----TTTCTGTAGTGTGTGTCTCATTCAGAGGCTTAG-CTGCTGACACAGGCTGAAATTCGACACAAACTTCTTTCCCACCAGTCTGTTTCAAAGGAGCTCAACCACACCCCAAC--TCTTTGACTTTTTTCGGTATCAATATTCAACTGC-TGTTTTCTACTCCTTGAAAGCATAACAAATAAAATAAATTTTCTTTTTCAGTAAATT-CTGAAACATAATTACCTTACCAGTCATACCAGGTGAATCTCATTAAGCTCTTTTGATTAAGGTAATGCTAATTCATAAAAGAAATT-------ACCGTAACTTCTGAC-TTTAACAAACAGGAAAGATCAGGGACTTGTCTAATTCAACTCGCAAAATTGAGCCACGTTTC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183890378 395 + 184069350 gttgctgaatgGCCACAGCCCGTGT------GTTC----TTTCTGTAGTGTGTGTCTCACTTGGAGGCTCAG-CTGCTGACACAGGTCGAACTTGGACACAAAGTTCTTCCCCACCAGTCTGTTTCAAAGGAGCTCGACCACGCCCCAGCCCACTTTGACCC-TTTCGGTATTGATTTTCAACTGCGGGTTTTCTACTCCTTGAAAGCATAACAAACAAAAGAACCTTTCTTTTTCAGTAAATT-CTGAAACATAATTACCTTACCAGTCATGCCAGGTGAATCTCATTAAGCTCTTTTGTTTAAGTTAATGCTAATTCATAAAAGAAAGT-------ATCCTAAATTCTGAC-TTTAACAAATAGGAAAGATCAGGGACTTGTCTAATTCAACTCACAAAATTCAGCCACATTTC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189283699 395 + 189454096 GTTGCTGAATGGCCACAGCCCGTGT------GTTC----TTTCTGTAGTGTGTGTCTCACTTGGAGGCTCAG-CTGCTGACACAGGTCGAACTTGGACACAAAGTTCTTCCCCACCAGTCTGTTTCAAAGGAGCTCGACCACGCCCCAGCCCACTTTGACCC-TTTCGGTATTGATTTTCAACTGCGGGTTTTCTACTCCTTGAAAGCATAACAAACAGAAGAACCTTTCTTTTTCAGTAAATT-CTGAAACATAATTACCTTACCAGTCATGCCAGGTGAATCTCATTAAGCTCTTTTGTTTAAGTTAATGCTAATTCATAAAAGAAAGT-------ATCCTAAATTCTGAC-TTTAACAAATAGGAAAGATCAGAGACTTGTCTAATTCAACTCACAAAATTCAGCCACATTTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178700713 395 + 178775436 GTTGCTGAATGGCCACAGCCCATGT------GTTC----TTTCTGTAGCATGCGTCTCATTCGGAGGCTCAG-CTGCTGACACAGGCCGAACTTGGACACAAAGTTCTTCCCCACCAGTCTGTTTCAAAGGAGCTCGACCACGCCCCAGCACACTTTGACCC-TTTCGGTATTGATTTTCAACCGCGGGTTTTCTACTCCTTGAAAGCATAACAAACAAAAGAACCTTTCTTTTTCAGTAAATT-CTGAAACATAATTACCTTACCAGTCATGCCAGGTGAATCTCATTAAGCTCTTTTGTTTAAGTTAATGCTAATTCATAAAAGAAAGT-------ATCCTAAATTCTGAC-TTTAACAAATAGGAAAGATCAGGGACTTGTCTAATTCAACTCACAAAATTGAGCCACATTTC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135635137 394 + 135778131 gttgctgaatgGCCACAGCCCGTGT------GTTC----TTTCTGTAGTGTGCGTCTCATTCGGAGGCTCAG-CTGCTGACACAGGCTGAACTTGGACACAAAGTTCTTCCCCACCAGTCTGTTTCAAAGGAGCTCGACCACGCCCCTGCACACTTTGACCC-TTTCGGTATTGATTTTCAACTGCGGGTTTTCTACTCCTTGAAAGCATAACAAACAAAAGAACCTTTCTTTTTCAGTAAATT-CTGAAACATAATTACCTTACCAGTCATGCCAGGTGAATCTCATTAAGCTCTTTTGTTTAAGTTAATGCTAATTCATAAAAGAAAGT-------ATCCTAAATTCTGAC-TTTAAC-AATAGGAAAGATCAGGGACTTGTCTAATTCAACTCACAAAATTGAGCCACATTTC
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87917080 388 - 129401213 GTTGCTGGATGAGGCCAGCCCTTGTTTGGCCATTCAGCATTTCTGT-GTGTG-GTCTTATTCAG-------T-CTGCTGACACCAGTAAAACTTGGACACAAAATCACTCCATACCAATCTGTTACAAAGGAGCTGGACCATGCCTTAACATGCTTTGACCCTGGTCAATATTCCTTTGCGGCTGC-TGTTTTCCACT-CTTGAAAATGAAACAAATCAATGAGCTTTTCTTTTTCGGTTAATTGTTAAAAAGTGAGCGCC-------ACATGCCATGTGACTCTCATTAAGCTCTTTTGGTGCAGTTAATGCTAATTCGTAAAAGAAAATACTCAAAATTCCAAATTCTGAC-TTTAATGCAGATGAAAGGTCACTG--------AATTCAACTCACAATTCGGTGCAGCATTTC
i mm10.chr8                I 4515 C 0
s canFam3.chr16             18182529 389 -  59632846 ttcaatgaatgACCACAGACCCTGT------TTTT----ATTTTAT-----GCATGTCATCTGG---CTCAGACTGCTGACACCCGTATAACTTGAACACAAAATTATCCCTCACCAGTCTGTTGCAGAGGAGCTCAACCATGTCTTACCACTCTTTGACCCTTTACAATATCCTTTCCCAGCTGC-TGTTTTCTACTCCTTGAAAGCATAACGAATCATAGGGCCTCTCTTTTTCAGTAAATT-CTAAAAAATAATCACCTTacaaatcatgccaggtgaatctcattaagctcttttgatgcagttaatactaattcataaaagaaaat-------gtcctaagtcctgacttttaacaatgacgaaagatcagggacttgtctaattcaaatcacaaaattgggccccatctc
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190742830 2493 - 190850796 I

a score=174078.000000
s hg38.chr4_KI270925v1_alt    518646 173 +    555799 TTTTACCATGAACATGGTGAAAGggattcaactaactaaataaaagaaaacaaaaggtaaggttaagtaatagcatattacat----ttggggatgaaggagagtctc--taatgctgtaacagagggattacttttgaacttattttccccgtctttattactgacttTGTAGAGGAG
s panTro4.chr4             193238990 173 + 193495092 TTTTACCATGAACATGGTGAAAGGGATTCAACTAACTAAATAAAAGAAAACAAAAGGTAAGGTTAAGTAATAGCATATTACAT----TTGGGGATGAAGAAGAGTTTC--CAATGCTGTAACAGAGGGATTACTTTTGAACTTATTTTCCCCGTCTTTATTACTGACTTTGTAGAGGAG
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198312558 173 + 198332218 TTTTACCATGAGCATGGTGAAAGggattcaactaactaaataaaagaaaacaaaaggtaaggttaagtaatagcatgttacat----ttggggatgagggagagtttc--taatgctgtaacagagggattacttttgaacttattttccccatctttattactgactttgaagaggaG
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113981674 173 + 115148730 TTTTACCGTGAGCATGGTGAAAGGGATTCAACTGACTAAATAAAAGAAAACAAAAGGTAAGGTTAAGTAATAGCATATTACAT----TTGGGAAGGAGGGAGAGTTTC--CAATGCTATAACAGAGGGATTACTTTTGAACTTATTTTCCCCGTCTTTATTACTGACTTTGAAGAGGAG
i nomLeu3.chr7b            C 0 C 0
s mm10.chr8                 87917468 169 - 129401213 TTTTGCCTCGAGAATGGTGAAAGGGATTTGGCTGGTGGAAGAAAAGAAAACTGAAGGAAAGGTTAAGTAATGGCATACTAAATTTGGTTGGGGAGAGGGGAGATTTTCTACAATCCAGCAA---------TACTTTTGAACTT-CTTTCCCCATCTTTATTAATGACTGTGGGGAGGAG
i mm10.chr8                C 0 I 7823
s canFam3.chr16             18182918 175 -  59632846 ttttgccatgagcataatgaaagggattcaactggctgaatgaaggaaaacaaaaggaaaggttaagtaatggcatattaaatttgtttgggggtg-gggagagcttc--taatgctataatacagggattacttttgaactagcttt-ccaatccttattaatgactttggggaggag
i canFam3.chr16            C 0 I 3
e calJac3.chr3             190742830 2493 - 190850796 I
e chlSab2.chr7             135635531   0 + 135778131 C
e papAnu2.chr5             178701108   0 + 178775436 C
e macFas5.chr5             189284094   0 + 189454096 C
e rheMac3.chr5             183890773   0 + 184069350 C

a score=6837.000000
s hg38.chr4_KI270925v1_alt    518819 13 +    555799 TAAATTGCATA--tt
s panTro4.chr4             193239163 13 + 193495092 TAAATTGCATA--tt
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198312731 14 + 198332218 TAAATTGCATAt-tt
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113981847 15 + 115148730 TAAATTGCATATAtt
i nomLeu3.chr7b            C 0 C 0
s canFam3.chr16             18183096 13 -  59632846 caaatagcatc--tt
i canFam3.chr16            I 3 I 1381
e mm10.chr8                 87917637 7823 - 129401213 I
e calJac3.chr3             190742830 2493 - 190850796 I
e chlSab2.chr7             135635531  0 + 135778131 C
e papAnu2.chr5             178701108  0 + 178775436 C
e macFas5.chr5             189284094  0 + 189454096 C
e rheMac3.chr5             183890773  0 + 184069350 C

a score=955969.000000
s hg38.chr4_KI270925v1_alt    518832 1882 +    555799  
s panTro4.chr4             193239176 1925 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198312745 1840 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113981862 1935 + 115148730  
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87917637 7823 - 129401213 I
e canFam3.chr16             18183109 1381 -  59632846 I
e calJac3.chr3             190742830 2493 - 190850796 I
e chlSab2.chr7             135635531    0 + 135778131 C
e papAnu2.chr5             178701108    0 + 178775436 C
e macFas5.chr5             189284094    0 + 189454096 C
e rheMac3.chr5             183890773    0 + 184069350 C

a score=1563613.000000
s hg38.chr4_KI270925v1_alt    520714 707 +    555799  
s panTro4.chr4             193241101 706 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198314585 700 + 198332218  
i ponAbe2.chr4             C 0 C 0
s nomLeu3.chr7b            113983797 707 + 115148730  
i nomLeu3.chr7b            C 0 M 15231
s rheMac3.chr5             183890773 688 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189284094 688 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178701108 687 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135635531 686 + 135778131  
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87917637 7823 - 129401213 I
e canFam3.chr16             18183109 1381 -  59632846 I
e calJac3.chr3             190742830 2493 - 190850796 I

a score=769755.000000
s hg38.chr4_KI270925v1_alt    521421 457 +    555799 tggacgctgcagaagaaaagtttgaagctagcagagattggttcatgaggtttaaggaaagaagtgctcttcatagcataacagtgcaaggtgaagcaagaagtgtgatggagaagctgcagcaagttacc----------cagaagatctagctgagatcactgatgaaggtagccacactacacaatagactttcagtgtagataaaacagccttctctactggaggtacatgtcatctaggactttcacagttagagagaaga---agtcaatgcctggcttcaaaatttcaaaggacaggctgagtctcatgacgggttaatgcatctggcaactttcagttaaagccaatgtgcccttaccattctgaaaattccagggcccttaaaacttacgctaaacctactctgcctgtgctctacaaatggaacaacaaagcctgaatgacagcacgtctatttatacta
s panTro4.chr4             193241807 454 + 193495092 tcgacgctgcagaagaaaagtttgaagctagcagagattggttcatgaggtttaaggaaagaagtgctcttcatagcataacagtgcaaggtgaagcaggaagtgtgatggagaagctgcagcaacttacc----------cagaagatctagctgagatcactgatgaaggtagccacactacacaatagactttcagtgtagatgaaacagacttctctactggaggtacatgtcatctaggactttgacggttagag---aga---agtcaatgcctggcttcaaaatttcaaaggacaggctgagtctcatgacgggttaatgcatctggcaactttcagttaaagccaatgtgcccttaccattctgaaaattccagggcccttaaaacttacgctaaacctactctgcctgtgctctacaaatggaacaacaaagcctgaatgacagcacgtctatttatacta
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198315285 457 + 198332218 tggacactgcagaagaaaagtttgaagctagcagagattggttcatgaggtttaaggaaagaaatgctcttcatagcataacagtgcaaggtgaagcacgaagtgtgatggagaagctgcagcaagttacc----------cagaagatctagctcagatcactgatgaaggtagccacactacacaatagactttcagggtagatgaaacagccttctctactggaggtacatgtcatctaggactttcatggttagagagaaga---agtcaatgcctggcttcaaaatttcaaaggacaggctgagtctcatgacgggttaatgcatctggagactttcggttaaagccaatgtgcccttactgttctgaaaattccagggcccttaaaacttatgctaaacctactctgcctgtgctctacaaatggaacaacaaagcctgaatgacagcacgtctatttctacta
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183891461 462 + 184069350 tggaagctgcagaagaaacgtttgaagctagcagaggttggttcatgaggtttaaggaaagaagccctcttcatagcataagagtgcaaggtgaagcgggaagtgtgacggagaagctgcagcaagttacttctgctgcagcagaagatctagctcagatcatcgatgaaggtagccacactacacaattgattttcagtgtagatgaatcagcct--tctgctggaaatgcatgtcatctaggactttcacagttagag---aga---agtcaatgcttggcttcaaagcttcagaggacaggctgagtctcatgacgggttaatgcatctggcgactttaagttaaagccgatttgcccttatgattccaaaaattctagggcccttaaaacttatgctaaacctactctgcctgtgccctacaaatgggacaacaaggcctgaatgacagcacgtctatttacacta
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189284782 462 + 189454096 tggaagctgcagaagaaacgtctgaagctagcagaggttggttcatgaggtttaaggaaagaagccctcttcatagcataagagtgcaaggtgaagcgggaagtgtgacggagaagctgcagcaagttacttctgctgcagcagaagatctagctcagatcatcgatgaaggtagccacactacacaattgattttcagtgtagatgaatcagcct--tctgctggaagtgcatgtcatctaggactttcacagttagag---aga---agtcaatgcttggcttcaaagcttcagaggacaggctgagtctcatgacgggttaatgcatctggcgactttaagttaaagccgatttgcccttacgattccaaaacttccagggcccttaaaacttatgctaaacctactctgcctgtgccctacaaatgggacaacaaggcctgaatgacagcacgtctatttacacta
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178701795 450 + 178775436 tggaagctgcagaagaaacgtttgaagctagcagaggttgcttcatgaggttt-----aagaagcCCTCTTCATAGCATAagagtgcaaggtgaagcaggaaGTGTGacggagaagctgcagcaagttacc----------cAGAAGATCTAGCTCAGATCACTGATAAAGGTGGTCACACTACACAAtcgattttcagtgtagatgaatcAGCCT--TCTGCTGGAAGTGcatgtcatctaggactttcacgGTTAGAG---AGAAgtagtcaatgcctggcttcaaagcttcaaaggacaggctaaGTCTCATGACGGGTTAATGCATCTGGCGACTTTAAGTTAAAGCCAATTTGCCCTCACAATTCTGAAAATTCCAGGGCCCTTAAAACTTATGCTAAACCTACTCTGCCTGTGCCCtacaaatggaacaacaaagcctgaatgacagcacatctatTTACACTA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135636217 448 + 135778131 tggaagctgcagaagaaacgtttgaagctagcaga--------------gtttaaggaaagaagccctcttcatagcataagagtgcaaggtgaagcgggaagtgtgatggagaagctgcagcaagttacttctgctgcagcagcagatctagctcagatcatcgatgaaggtagccacactacacaattgattttcagtgtagatgaatcagcct--tctgctggaagtgcatgtcatctaggactttcacagttagag---aga---agtcaatgcttggcttcaaagcttcagaggacaggctgagtctcatgacgggttaatgtaactggagactttaagttaaagccgatttgcccttacgattccgaaaattccagggcccttaaaacttatgctaaacctactctgcctgtgctctacaaatgcaacaacaaagcctgaatgacagcacgtctgtttacacta
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87917637 7823 - 129401213 I
e canFam3.chr16             18183109 1381 -  59632846 I
e calJac3.chr3             190742830 2493 - 190850796 I
e nomLeu3.chr7b            113984504 15231 + 115148730 M

a score=3148579.000000
s hg38.chr4_KI270925v1_alt    521878 1464 +    555799  
s panTro4.chr4             193242261 1464 + 193495092  
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198315742 1485 + 198332218  
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183891923 1503 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189285244 1499 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178702245 1484 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135636665 1501 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190745323 1469 - 190850796  
i calJac3.chr3             I 2493 C 0
e mm10.chr8                 87917637 7823 - 129401213 I
e canFam3.chr16             18183109 1381 -  59632846 I
e nomLeu3.chr7b            113984504 15231 + 115148730 M

a score=683479.000000
s hg38.chr4_KI270925v1_alt    523342 286 +    555799 AATAGGACAGAGATACAGTGAGTCGTTAATGGTCAAGAAACCCAGAAACCTGATGAGAGTAAACTAGCCTCAAGACTGAGGAAAAACTTTCCAGAAGAATTTGGGCCTGTTATTGTC----------------------------------------Ctcattca-------------------------------------------tgcatgcaatactaacctgcatgcctact-tatgccaagaactattttaagagatagagattcagcaattaacaaaac--agtctctgctctcatggagcttgcatagggcaaagtggga------gcaaccagtgaagaaatttgaaaatgtgtatacaagataggtca
s panTro4.chr4             193243725 286 + 193495092 AATAGGACAGAGATACAGTGAGTCATTAATGGTCAAGAAACCAAGAAATCTGATGATAGTAAACTAGCCTCAAGACTGAGGAAAAACTTTCCAGAAGAATTTGGGCCCGTTATTGTC----------------------------------------Ctcattca-------------------------------------------tgcatgcaatactaacctgcatgcctact-tatgccaagaactattttaagagatagagattcagcaattaacaaaac--agtctctgctctcatggagcttgcatagggcaaagtggga------gcaaccagtgaagaaatttgaaaatgtgtatacaagataggtca
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198317227 253 + 198332218 AATAGGACAGAGATGCAGTGAGTCATTAATGGTCAAGAAACCAAGAAATCTGATGATAGTAAACTAGCCTCAAGACTGAGGGAAAACTTTCCAGAAGAATTTGGGCCCGTTATTGTC----------------------------------------CTCATTCA-------------------------------------------TGCATGCAGTACTAACCTGCAT----------------------------------gagatgcagcaatgaacaaaac--agtctctgctctcatggagcttgcatagggcagagtggaa------gcaaccagtgaagaaatttgagactgtgtatacaagataggtca
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183893426 292 + 184069350 AATAGGACAGAGATACAGTGAGTCATTAATGGTCAAGAAATCAAGAAATTTGATGACAGTAAACTAGCCTCAAGATTGAGGAAAAACTTTCCAGAAGAATTTGGGACCGTTATTGTC----------------------------------------Ctcactca-------------------------------------------tgcatgcaatactaacctgcatgcctact-tatgccaagaactatcttaagagatagagatgcagcaatgaacaagac--agtctctgctctcatggagcttgcacaggacagagtgggagtaggagcaaccagtgaagaaatctggaagtgtgtatacatgataggtca
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189286743 292 + 189454096 AATAGGACAGAGATACAGTGAGTCATTAATGGTCAAGAAATCAAGAAATTTGATGACAGTAAACTAGCCTCAAGATTGAGGAAAAACTTTCCAGAAGAATTTGGGACCGTTATTGTC----------------------------------------Ctcactca-------------------------------------------tgcatgcaatactaacctgcatgcctact-tatgccaagaactatcttaagagatagagatgcagcaatgaacaaaac--agtctctgctctcatggagcttgcacaggacagagtgggagtgggagcaaccagtgaagaaatctggaagtgtgtatacatgataggtca
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178703729 284 + 178775436 AATAGGACAGAGATACAGTGAGTCATTAGTGGTCAAGAAATC--------TGATGATAGTGAACTAGCCTCAAGATTGAGGAAAAACTTTCCAGAAGAATTTGGGACCGTTACTGTC----------------------------------------CTCACTCA-------------------------------------------TGCATGCAATACTAATCTGCATGCCTACT-TATGCCAAGAACTATCTTAAGAGATAGAGAtgcagcaatgaacaaaac--agtctctgctctcatggagcttgcaCAGGACAGAGTGGGAGTGGGTGCAACCAGTGAAGAAATCTGGAAGTGTGTATACATGATAGGTCA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135638166 290 + 135778131 AATAGGACAGAGATACAGTGAGTCATTAATGGTCAAGAAATCAAGAAATTTGATGACAGTAAACCAGCCTCAAGATTGAGGAAAAACTTTCCAGAAGAATTTGGGACCGTTATTGTC----------------------------------------Ctcactca-------------------------------------------tgcatgcaatactcacctgcatgcctact-tatgccaagaactatcttaagagat--agatgcagcaatgaacgaaac--agtctctgctctcatggagcttgcacaggacagagtgggagtgggagcgaccaatgaagaaatctggaagtgtgtatacatgataggtca
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190746792 279 - 190850796 AACGAGACAGAGATACAGTGAGTCAATAATGGTGAAGAAACCAAGAAATATGGTGATAGTAAACTAGCCTTAAGATTGAGG---AACTTTCAAGAAGAATTTGGGCCCATTATTGT-----------------------------------------Ctcattca-------------------------------------------cgcatgcaatactcacctgcatgcc-act-taggccaagaactattttaagaga--gagatgcagcaatgaataaaac--agtctctgctctcatggagcttgcataggggagagcggga------gcagccagtgaagaaatccgaaagtgtgtatacaagataggtca
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18184490 362 -  59632846 AATGGGACAGAAACACAGTGAATCATGAAGAGTCAAGAAACCAAGAAATTTGGGGGTATTAAGCTAGCCCAAAGATTGAGGGAAAACTTGCAGAAATTATTTGGGCCC-CTATTGTTTCTTTGTTTCTCTTTTTCCACAAAAAATATGCAGACCTAGCCCACTAAAATAAGCTTTAAAATAACTGTACTTCTGGAAAATATCTATCTGTGCATGTAATACCTATCTACAAgcttattatatgcaa------tttttaaaaactggagatatagcaataaacaaaattaagtccctgatctcatagagcttacataggggagagataga------gcaattagtgaag---ttttaaaatatgcacataaaatatgtca
i canFam3.chr16            I 1381 I 251
e mm10.chr8                 87917637 7823 - 129401213 I
e nomLeu3.chr7b            113984504 15231 + 115148730 M

a score=142512.000000
s hg38.chr4_KI270925v1_alt    523628 54 +    555799 gatgataagaagtgctttaaagaagaataaagtaaaataagagaatagagagta
s panTro4.chr4             193244011 51 + 193495092 gatgat---aagtgctttaaagaagaataaagtaaaataagagaatagagagta
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198317480 54 + 198332218 gatggtaagaagtactttaaagaagaataaagtaaaataagagaatagagagtg
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183893718 54 + 184069350 gatggtaagaagtgctttaaggaagaataaagtggaataagaaaatagagagtg
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189287035 54 + 189454096 gatggtaagaagtgctttaaggaagaataaagtggaataagaaaatagagagtg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178704013 54 + 178775436 AATGGTAAGAAGTgctttaaagaagaataaagtagaaTAAGAAAATAGAGAGTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135638456 54 + 135778131 gatggtaagacgtgctttaaagaagaataaagtagaataagaaaatagagagtg
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190747071 54 - 190850796 gatggtaagaagtgctttaaagaggaatgaagtagaataagagaatagagagtg
i calJac3.chr3             C 0 I 714
s canFam3.chr16             18185103 54 -  59632846 gaccataagaattgctgcaaagaagaataaactgatacaagggaatagggaatg
i canFam3.chr16            I 251 C 0
e mm10.chr8                 87917637 7823 - 129401213 I
e nomLeu3.chr7b            113984504 15231 + 115148730 M

a score=870568.000000
s hg38.chr4_KI270925v1_alt    523682 344 +    555799 agaaggtgccattttaagtgaaatggtcagaaaagattcttcttatgacagag-taataattaataattaagcaaaggcctggat-aagagaggaagtaagccatgctgattcctgatgagaaagcattccaggcaaaggggaccacacatgcaaaggccctgaggcagaagcacatctgcctggtgtctttgaagattgcaataatagaggggagactgatgggactagagatcagagaagtgtc-aggggacaagatggtttaagacattcctagccatgg---------------------------------------aaggttttaagcagat-gaaaatattatttgccttatgctttaaaaagacttactctggatcacc
s panTro4.chr4             193244062 344 + 193495092 agaaggtgccattttaagtgaaatggtcagaaaagattcttcttatgacagag-taataattaataattaagcaaaggcctggat-aagagaggaagtaagccatgctgattcctgatgagaaagcattccaggcaaaggggaccacacatgcaaaggccctgaggcagaagcacatctgcctggtgtctttgaagattgcaataatagaggggagactgattggactagagatcagagaagtgtc-aggggacaagatggtttaagacattcctagccatgg---------------------------------------aaggttttaagcagat-gaaaatattatttgccttatgctttaaaaagacttactctggatcacc
i panTro4.chr4             C 0 C 0
s ponAbe2.chr4             198317534 344 + 198332218 agaaggtgccattttaagtgaaatggtca-aaaagattcttcttatgacagagttaataattaataattaagcaaaggcctggat-aagagaggaagtaagccatgctgattcctgatgagaaagcattccaggcaaaggagaccacacatgcaaaggccctgaggcagaagcacatctgcctggtgtctttgaagactgcaataatagaggggagactgattggactagagatcagagaagtgtc-aggggacaagatggtttaagacattccttgccatgg---------------------------------------aaggttttaagcagat-gaaaacattatttgccttatgctttaaaaagacttactctggatcacc
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183893772 334 + 184069350 agaaggtgccatttgaagttaaatggtcagaaaagagccttctcatgacaggg--------taataatgaagcaaaggcctggat-aagagag---gtaagccatgctgctacctgaagagaaagcattccaggcaaaggggaccacacatgcagaggccctggggtagaagcacatctgcctggtttctctgaagactgcaataacagaggggagcctgatgggaatagagatcagagaagtgtc-aggggacaagatggtttaagaccttcctagccatgg---------------------------------------aaggttttaagcagatggaaaacattatttgccttacgcttt-aaaagacttactctggatcacc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189287089 334 + 189454096 agaaggtgccatttgaagttaaatggtcagaaaagagccttctcatgacaggg--------taataatgaagcaaaggcctagat-aagagag---gtaagccatgctgctacctgaagagaaagcattccaggcaaaggggaccacacatgcagaggccctggggtagaagcacatctgcctggtttctctgaagattgcaataacagaggggagcctgatgggaatagagatcagagaagtgtc-aggggacaagatggtttaagaccttcctagccatgg---------------------------------------aaggttttaagcagatggaaaacattatttgccttacgcttt-aaaagacttactctggatcacc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178704067 326 + 178775436 AGAAGGTGCCATTTGAAGTTAAAAGGTCAGAAAAGAGCCTTCTTATGACAGGG--------TAATAATGAAGCAAAGGCCTGGAT-AAGAGAG---GTAAGCCATGCTGCTACCTGAAGAGaaagcattccaggcaaaggggACCGCGCATGCAGAGGCCCTGGGGCAGAAGCACATCTGCCTGGTTTCTCTGAAGATTGCAATAACAGAGGGGAGCCTGATGGGAATAGAGATCAGAGAAGTGTC-AGGGGACAAGACGGTTTAAGACCTTCCTAGCCATGG-----------------------------------------------AAGCAGATGGAAAACATTATTTGCCTTACGCTTT-AAAAGACTTActctggatcacc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135638510 334 + 135778131 agaaggtgccatttgaagttaaatggtcagaaaagagccttcttatgacacgg--------taataatgaagcaaaggcctggat-aagagag---gtaagccatgctgctacctgaagagaaggcattccaggcaaaggggaccgcacatgcagacgccctggggcagaagcacatctgcctggtttctctgaagattgcaataacagaggggagcctgatgggaataaagatcagagaagtgtc-aggggacaagatggtttaagaccttcctagccatgg---------------------------------------aaggttttaagcagatggaaaacattatttgccttacgcttt-aaaagacttactctggatcacc
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190747839 336 - 190850796 agaaggtgccattttaagtgaaatggtcagaaaagattcttcttatgacaggg--------taataattaagcaaaggcctggat-aagagaggaagtaagccatgctgatacctgatgaaaaagcattccaggcaaaggggagtacacatgcaaaggccttgaggcagaagcacatctggttggtgtctttgaagactgcaagaatagaggggagactgattggactagagatctgagaagggtc--ggggacaagatggtttaagaccttgctagccatgg---------------------------------------aaggttttaagcagatgaaaaacattatttgccttatgcttt-aaaagacttactctggatcctc
i calJac3.chr3             I 714 C 0
s canFam3.chr16             18185157 374 -  59632846 --ggggttccattttaaatgtagtaggcag-aaagactcctttaatgataggg--------taat-attcagcagaatcttgaataaagagtgcaagtaagccatggtactatctggtggaagagcattccaggcaaagggcaccacaagtgcaaacaccctgaggcagaagcacatctgcttggcatcttcgaggattgcagtgtgagaggggaacatgattggacttgagatcaggggagtgtcaagagaacaagatgatttaagtctttgtcagctgtggcaagatactggcttttactttgatctggaaaattactggaaggttttaagcagatgaaaaacattatctgtcttatatgtt-aaaaggctttctctggctactc
i canFam3.chr16            C 0 I 276
e mm10.chr8                 87917637 7823 - 129401213 I
e nomLeu3.chr7b            113984504 15231 + 115148730 M

a score=278492.000000
s hg38.chr4_KI270925v1_alt    524026 127 +    555799 tgaggtcaggggttcgagaccagcctggccaacatggcaaaaccccgtctctattaaaaatacaaaaattagccaggcttggtgatgca------tgcctgtagtcccagctacttgggaggctgaggcagga
s panTro4.chr4             193244406 126 + 193495092 tgaggtcaggggttcgagacaagcctggccaacatggcaaaaccctgtctctattaaaaatacaaaaattagccaggcttggtgatgca------tgcctgtagtcccagctac-tgggaggctgaggcagga
i panTro4.chr4             C 0 N 0
s ponAbe2.chr4             198317878 131 + 198332218 tgagttcaggagctcgagaccagcctggccaacatggcaaaaccccatctctattaaaaatacaaaaattagccaggcttggtgatgcaccaagctacttg--gtcccagctacttgggaggctgaggcagga
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183894106 127 + 184069350 tgaggttaggagttcgcgaccagcctggccaacatagcgaaaccccatctctattaaaaatacaaaaattagcagggcttgatggtgca------tgcctgtagtcccagctactcaggaggacgaggcagga
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189287423 127 + 189454096 tgaggtcaggagttcgcgaccagcctggccaacatggcgaaaccccatctctattaaaaatacaaaaattagcagggcttgatggtgca------tgcctgtagtcccagctactcaggaggctgaggcagga
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178704393 127 + 178775436 tgaggtcgggagttcgcgaccagcctggccaacatggcgaaaccccatctctattaaaaatacaaaaattagcagggcttgatggtgca------tgcctgtagtcccagctactcaggaggctgaggcagga
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135638844 127 + 135778131 tgaggtcaggagttcacgaccagcctggccaacatggcaaaaccccatctctattaaaaatacaaaaattagctgggcttgatggtgca------tgcctgtagtcccagctactcaggaggctgaggcagga
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190748175 127 - 190850796 tcaggtcaggagttcaagaccagcctggtcaacatggtgaaaccctgactctactaaaaatacaaaaattagccagggttggtggtgca------tgcctgtagtatcagctactgaggaggctcaggtagga
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87917637 7823 - 129401213 I
e canFam3.chr16             18185531 276 -  59632846 I
e nomLeu3.chr7b            113984504 15231 + 115148730 M

a score=330902.000000
s hg38.chr4_KI270925v1_alt    524153 167 +    555799 gaatcgcttgaacccaggaggtagaggttgtagtgagcccagattgcaccactgcactccagcctgggtgacagag-gagactctgtctca--------aaaaacaaaaataaata-----------------------------cttactctggttgctcagtgaagaacaaagtgcaggg----agaaagagaaagtgggagaggag
s panTro4.chr7               2082527 194 - 161824586 gaatcacttgaacccaggaggtagaggttgtagtcaacccagattgcaccactgcactccagcctgggcgacagag-gagactctgtctca--------aaaaaataaaataaataaaataaaataaaataaaataaaataaagacttactctggttgctcag--aagaacaaagtacaggg----aaaaagagaaagtggaaaaggag
i panTro4.chr7             N 0 C 0
s ponAbe2.chr4             198318009 167 + 198332218 gaatcgcttgaacccaggaggtagaggttgtagtgagcccagattgcaccactgcactccagcctgggcgacagag-gagactctgtctca--------gaaaaaaaaaataaaga-----------------------------cttactctggttgctcagtgaagaacaaagtgcaggg----agaaaaaaaaagtgggagaggag
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183894233 175 + 184069350 gaattgcgtgaccccaggaggtagaggttgcagtaagcccagatcgcgccactgcactccagcctgggagatagag-gagactctgtctca--------aaataaataaataaata-------------------------aagacttactctggttgttcagtgaagaacaaagtgcagggagcaagaaagagtaagtgggagaggag
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189287550 175 + 189454096 gaattgcgtgaacccaggaggtagaggttgcagtgagcccagattgagccactgcactccagcctgggtgacagag-gagactctgtctca--------aaataaataaataaata-------------------------aagacttactctggttgttcagtgaagaacaaagtgcagggagcaagaaagagtaagtgggagaggag
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178704520 179 + 178775436 gaattgcatgaacccaggaggtagaggttgcagtgagcccagatcgcgccactgcacttcagcctgggtgatagag-gagactctgtctca----aaataaataaataaataaata-------------------------aagacttacTCTGGTTGTTCAGTGAAGAACAAAGTGCAGGGAGCAAGAAAGAGCAAGTGGGAGAGGAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135638971 169 + 135778131 gaattgcgtgaacccaggaggtagaggttgcagtgagcccagatcgcgccactgcactccagcctgggtgacagag-gagactctgtctcaaaataaataaataaataaataaata-------------------------aagacttactct--------------gaacaaagtgcaggaagcaagaaagagtaagtgggagaggag
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190748302 162 - 190850796 -aatcacttgaacccaggaggcagaggttgcagtgagcccagattgcgccactgcactccagcct-ggtgacagagtgagactctgtctca--------aaaaaa------aaaga-------------------------------cattctggttgctcagtgaagagcaaagagcagggagcatgagagagtaagtgggagaggag
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87917637 7823 - 129401213 I
e canFam3.chr16             18185531 276 -  59632846 I
e nomLeu3.chr7b            113984504 15231 + 115148730 M

a score=282686.000000
s hg38.chr4_KI270925v1_alt    524320 121 +    555799 ttaggaggctattttgataatccatgaaagcaatgacgtaaagtgaagcagggtgtacacaatgggtgtggcaagggaagctcagattctgaatacagttcaacagtgtatgctgatatga
s panTro4.chr7               2082721 121 - 161824586 ttaagaggctgttttggtaatccatgaaagcaatgacgtaaagtgaagcaggttgtacacaatgggtgtggcaagggaagctcagattcttaatacagttcaacagtgtatgctgatatga
i panTro4.chr7             C 0 C 0
s ponAbe2.chr4             198318176 119 + 198332218 ttaggaggctattttgataatccatgaaagcaatgacataaagtgaagcagg-tgtacacagtgggtgtggcaagggaagctcagattctgaatgtag-tcaacagtgtatgctgatATGA
i ponAbe2.chr4             C 0 I 58
s rheMac3.chr5             183894408 121 + 184069350 tcaggaggctattttgataatccttgaaagcaatgatgtaaagtgaagcaaggtgcacacaatggttggggcaaagggagctcagattctgaactcagttcaacagtgtatgctgatatat
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189287725 121 + 189454096 tcaggaggctattttgataatccttgaaagcaatgatgtaaagtgaagcaaggtgcacacaatggttggggcaaggggagctcagattctgaactcagttcaacagtgtatgctgatatga
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178704699 121 + 178775436 TCAGGAGGCTATTTTGATAATCCTTGAAAGCAACGATGTAAAGTGAAGCAAGGTGCACACAATGGTTGGGGCAAGGGGAGCTCAGATTCTGAACTCAGTTCAACAGTGTATGCTGATATAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135639140 121 + 135778131 tcaggaggttattttgataatccttgaacgcaatgatgtaaagtgaagcaaggtgcacacaatggttgtggcaaggggagctcagattctgaacacagttcaatagtgtatgctgatatga
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190748464 121 - 190850796 acaggaggctgtttccataatctattaaaacaatgacaaaaagtgaagctgggtgcacacagtgggtgtggaaaggggagctcgggtgctgaatatggttcaacagtgtatgctgatagga
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18185807 113 -  59632846 TTTTTaagttgctataataatccaggaaaacgatgatataaaatgcagcacagtgaactcaatggatgtggtgaga-------agattctgaatgtagttcaatagtgtttgctgactga-
i canFam3.chr16            I 276 C 0
e mm10.chr8                 87917637 7823 - 129401213 I
e nomLeu3.chr7b            113984504 15231 + 115148730 M

a score=422377.000000
s hg38.chr4_KI270925v1_alt    524441 217 +    555799 agtgcaagaaacaaagaagggtcagggcaagttttctggcctaacggctggtatgctggaggtgctatttactgagacggagaagact--gaggagtgt-----tgggcccaggggttgaaggtggaggatcaagaattcccttatggatgtgtgatagttg-----tctattagtcttccaagtggtgataactggcagataatt--agatatgagtctaaattttagag
s panTro4.chr7               2082842 222 - 161824586 ggtgcaagaaacaaagtggggtcaaggcaagtttactggcctaacggctggtacgctggaggtgctatttactgagatggagacgact--gaggagtgt-----tgggcccaggggttgaaggtgaaggatcaagaatccttttatggatgtgtgatagttgagttgtctgttagtcttccaagtggtgataattggtagataatt--agatatgagtctaaattttagag
i panTro4.chr7             C 0 C 0
s rheMac3.chr5             183894529 222 + 184069350 ggtgtcagagacaaacaggggtcagggcaagtttcccggcctaacagctggtacgctggaggtgctatttactaagacagagaagact--gaggagtgt-----tgggcccaggggttgaaggtggaggatcaagaacttccttatggatgtgtgatagttgagttgtctgttcatcttccaagtggtgatcattagcagttaatt--agatacgagcctaaattttagag
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189287846 222 + 189454096 ggcgtcagagacaaagaggggtcagggcaagtttcccggcctaacagctggtacgctggaggtgctatttactgagacagagaagact--gaggagtgt-----tgggcccaggggttgaaggtggaggatcaagaacttccttatggatgtgtgatagttgagttgtctgttcatcttccaagtggtgatcattagcagttaatt--agatacgagcctaaattttagag
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178704820 217 + 178775436 GGTGTCAGAGACAAACAGGGGTCAGGGCAAGTTTCCCGGCCTAACAGCTGGTACGCTGGAGGTGCTATTTACTGAGACAGAGAAGACT--GAGGAGTGT-----TGGGCCCAGGGGTTGAAGGTGGAGGATCAAGAACTTCCTTATGGATGTGTGAT-----AGTTGTCTGTTAATCTTCCAAGTGGTGATCATTAGCAGTTAATT--AGATACGAGCCTAAATTTTAGAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135639261 222 + 135778131 ggtgtcagagacaaagaggggtcagggcaagcttcccgggctaacagctggtacgctggaggtgctatttactgagacagagaagact--gaggagtgt-----tgggcccaggggttgaaggtggaggatcaagaacttccttatggatgtgtgatagctgagttgtctgttaatcttccaagtggtgatcattagcagttaatt--agatatgagcctaaatttcagcg
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190748585 216 - 190850796 ggtgtaagaagcaaagaggggtcagggaaagttttctggcctaacagctggtatgctggaggtgctatttactgagatggagaggact--gagtagggt-----agggcccagggcttgaaggtggaggatcaagaattccctta------tatgatagttgagttgtctattaatcttccaagtagttataattaacagataatt--aaatatgagtctaaattttagag
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18185920 228 -  59632846 ggtgtaaaaaacaaaaaggagtcagggtgagttttctggtctggcaactggtatcctggaactgacatttgctaagatggggaaagtgaagagcagtgcagatgtggggcctgagattagaagtggaggaccaagaattatctcatggaagtatgtg---tgaattgtctattagcctactaaataattataattagcagacagttggagatatgagtgtggagttcaagg
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87917637 7823 - 129401213 I
e nomLeu3.chr7b            113984504 15231 + 115148730 M
e ponAbe2.chr4             198318295  58 + 198332218 I

a score=600555.000000
s hg38.chr4_KI270925v1_alt    524658 273 +    555799 gagaggtaggagctggaaatatgtattcatggaccgtgcacacacacatggaatttaatgccattgggcttcatgagatcacagaggcatgagtgcacctagaaaaacggttgagaactgagacccgggatactcccttgttaaaaggtAAATGTTCCTTTTACATTTTGAACTTATAGAAATAATGACACAGTAGCCAGCCAGTTGCTGAAACTCTACTCAGTTCAGAGTAA--------AACAAAATTCCTATTTTATCGAATCACTGAATGCCATTTA
s panTro4.chr7               2083064 267 - 161824586 gagaggtaggagctggaaatatgtgttcatggaccatgcacatatacatagaatttaatgccattgggcttcatgagatcatagaggcatgagtgcacctagaaaaacagttgagaagtgagacctgggatactcccttgttaaaaggtAAATGTTCCTTCTACATTTTGAATTTATAGAAATAATGACACAGTAGCCAG----TTGCTGAAACACTACCCAGTTCAGAGTAA----------CAAAATTTCTATTTTATCAAATCATTGAATGCCATTTA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr4             198318353 264 + 198332218 gagaggtaggagctggaaatatgcaatcatgg--ctggcacacatatgtggaatttaatgcca-tgggcttcatgagatcacagaggcatgagtgcacctagaaaaacagttgag-actgagacccgggatactcccttgttaaaaggtAAATG-TCCTTTTACATTTTGAATTTATAGAAATAATGACACAGTAGCCAG----TTGCTGAAACTCTACTCAGTTCAGAGTAA--------AGCAAAATTCCTATTTTATAGAATCACTGAATGCCATTTA
i ponAbe2.chr4             I 58 C 0
s rheMac3.chr5             183894751 263 + 184069350 gagaggtaggagctggaaatatgcgttcatcgaccgtgcacacgtacatagaatttaatgccatcgggctttctgaggtcacagaggcatgagcacacctagaaaaacggttgagaactgagacccaggatactcccttgttaaaaggtAAATGTTCCTTCTACATTTTGAATTTACAGAAATGATGACACAGTAGCCAG----CTGCTGAAACTCTGCTCAGTTCAGAGTAA--------AACAAA------ATTTTATCAAATCACCAAATGCCATTTA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189288068 263 + 189454096 gagaggtaggagctggaaatatgcattcatcgaccgtgcacacgtacatggaatttaatgccatcgggctttctgaggtcacagaggcatgagcacacctagaaaaacggttgagaactgagacccaggatactcccttgttaaaaggtAAATGTTCCTTCTACATTTTGAATTTACAGAAATGATGACACAGTAGCCAG----CTGCTGAAACTCTGCTCAGTTCAGAGTAA--------AACAAA------ATTTTATCAAATCACCAAATGCCATTTA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178705037 261 + 178775436 GAGAGGTAGGAGCTGGAAATATGCGTTCATCGACCGTGCACACGTACATGGAATTTAATGCCATCAGGCTTTCTGAGGTCACAGAGGCACGAGCACACCTAGAAAAACGGTTGAGAACTGAGACCCAGGATACTCCCTTGTTAAAAGGTAAATGTTCCTTCTACATTTTGAATTTACAGAAATGATGACACAGTAGCCAG----CTGCTGAAA--CTGCTCAGTTCagagtaa--------aacaaa------attttatcgAATCACCAAATGccattta
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135639483 263 + 135778131 gagaggtaggagctggaaatatgcgttcatcgaccgtgcacacgtacatggaattgaatgccatcgggctttctgaggtcacagaggcaggagcgcacctagaaaaacggttgagaactgagacccaggatactcccttgttaaaaggtAAATGTTCCTTTTACATTTTGAATTTACAGAAATGATGACACAGTAGCCAG----CTGCTGAAACTCTGCTCAGTTCAGAGTAA--------AACAAA------ATTTTATTGAATCACCAAATGCCATTTA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190748801 265 - 190850796 gagaggtgggagctagaaatacacattcatgaaccatgcacatatacgtggaatttaatgcaatccggtttcatgagatcacatagtcatgagtgcacctaagaaaagggctgaggactTTTAACCA-----------TGTTAAAAGATAAATGTTCCTTTTACATTTTGAATTTATGGCAATGATGGGACAGTAGACAA----CTGCTG-AACTTTACTCAGTTCATAGTAAAATATTAAAACAAAATTTCTGTTTCATCGAATCACTGAATGGCATTTA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18186148 229 -  59632846 gagcagtcagagctggacatctccatttgtgaacctccagcatatagatat-atttaatgccatcaagct-------------gCAGCATG---------------ATGGCTGAGGGCTGAGACCCATGATATTCCC--ATTCAAAGATGAATT---------AATTTTGAATCTACAAAAATGATGATAAAATAGCCAA----ACACTGAAACTTTGCTCAGTTTACAGTAA--------AACAAAATTCCTATTTTATCAGATCGCTGAATGGCATTTA
i canFam3.chr16            C 0 I 413
e mm10.chr8                 87917637 7823 - 129401213 I
e nomLeu3.chr7b            113984504 15231 + 115148730 M

a score=1258353.000000
s hg38.chr4_KI270925v1_alt    524931 516 +    555799  
s panTro4.chr7               2083331 510 - 161824586  
i panTro4.chr7             C 0 C 0
s ponAbe2.chr4             198318617 515 + 198332218  
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183895014 499 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189288331 499 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178705298 496 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135639746 499 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190749066 511 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18186790 537 -  59632846  
i canFam3.chr16            I 413 I 192
e mm10.chr8                 87917637 7823 - 129401213 I
e nomLeu3.chr7b            113984504 15231 + 115148730 M

a score=116557.000000
s hg38.chr4_KI270925v1_alt    525447  61 +    555799 AGGAGCATCCAGGTAGAGGGGAAGGAAT-------------------------------------------------GGT--GGTATGAACAGGAGGCAGGAGGGCTCAAGC
s panTro4.chr7               2083841  61 - 161824586 AGGAGCATCCAGGTAGAGGGGAAGGAAT-------------------------------------------------GGA--GGTGTGAATGGGAGGCAGGAGGGCACAAGC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr4             198319132  61 + 198332218 AGGAGCATCCAGGTAGAGGGGAAGGAAT-------------------------------------------------GGA--GGTGTGAACAGGAAGCCGAAGGGCACAAGC
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183895513 112 + 184069350 AGGGGCATCCAGGTAGAGGGGAGGGAATGGAGGTGTGAACCGGAGGCAGGAGGGCAGGGCATCCAGGTAGAGGGGAGGGAATGGTGTGAACCGGAGGCAGGAGGGCGCAAGC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189288830  61 + 189454096 AGGGGCATCCAGGTAGAGGGGAGGGAAT-------------------------------------------------GGA--GGTGTGAACCGGAGGCAGGAGGGCGCAAGC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178705794  61 + 178775436 AGGGGCATCCAGGTAGAGGGGAGGGAAT-------------------------------------------------GGA--GGTGTGAACCGGAGGCAGGAGGGCGCAAGC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135640245  61 + 135778131 AGGGGTATCCAGGTAGAGGGGAGGGAAT-------------------------------------------------GGA--GGTGTGAACAGGAGGCAGGAGGGCGCAAGC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190749577  57 - 190850796 AGGAGCATCCAGGCAGAGGGAAAGGAGT-------------------------------------------------AGA--TGCATGAGCAGGAGGCAGGAGGGT----GC
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87917637 7823 - 129401213 I
e canFam3.chr16             18187327 192 -  59632846 I
e nomLeu3.chr7b            113984504 15231 + 115148730 M

a score=1770951.000000
s hg38.chr4_KI270925v1_alt    525508 715 +    555799  
s panTro4.chr7               2083902 708 - 161824586  
i panTro4.chr7             C 0 C 0
s ponAbe2.chr4             198319193 713 + 198332218  
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183895625 714 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189288891 714 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178705855 717 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135640306 717 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190749634 692 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18187519 819 -  59632846  
i canFam3.chr16            I 192 C 0
e mm10.chr8                 87917637 7823 - 129401213 I
e nomLeu3.chr7b            113984504 15231 + 115148730 M

a score=600.000000
s hg38.chr4_KI270925v1_alt    526223 1 +    555799 G
s ponAbe2.chr4             198319906 1 + 198332218 G
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183896339 1 + 184069350 G
i rheMac3.chr5             C 0 I 2
s chlSab2.chr7             135641023 1 + 135778131 G
i chlSab2.chr7             C 0 I 2
e mm10.chr8                 87917637 7823 - 129401213 I
e canFam3.chr16             18188338 0 -  59632846 C
e calJac3.chr3             190750326 0 - 190850796 C
e papAnu2.chr5             178706572 0 + 178775436 C
e macFas5.chr5             189289605 0 + 189454096 C
e nomLeu3.chr7b            113984504 15231 + 115148730 M
e panTro4.chr7               2084610 0 - 161824586 C

a score=36327.000000
s hg38.chr4_KI270925v1_alt    526224 438 +    555799 AGTCAGcatgggtaggaagaatcaatatcgtgaaaatggccacactacccaaggtaaattatagattcaatgccatccccatcaagctaccaatgattttcttcacagaattggaaaaaactactttaaagttcatatggaaccaaaaaagagcccgcattgccaagtcaatcctaagccaaaagaacaaagctggaggcatcatgctacctgacgtcaaactatactacaaggctacagtaagcaaaacagcatggtactggtaccaaaacagagatatagaccaatggaacagaacagagccctcagaaataatgccgcatatctacaactatctgatctttcacaaa--ctgacaaaaacaagaaatggggaaaggattccctat-ttaataaatggtgctgggaaaactggctagccatatgtagaaagctgaaact
s ponAbe2.chr4             198319907 441 + 198332218 AGTCAGcatgggtaggaagaatcaatattgcgaaaatggccatactgcccaaggtaatttatagattcaatgccatccccatcaagctaccaatgactttcttcacagaattggaaaaaactactttaaagttcatatggaaccaaaaaagagcccgcatcaccacgtcaatcctaagccaaaagaacaaagctagaggcatcacgctacctgacttcaaactatactacaaggctacagtaacaaaaacagcatggtactggtaccaaaacagagatatagaccaatggaacagaacagggccctcagaaataatgccacatatctacaaccatctgatttttgacgaaacctgacaaaaacaagcaatgaggaaaggattccttttattgataaatagtgctgggaaaaatggctagccatatgtagaaagctgaaact
i ponAbe2.chr4             C 0 M 535
e mm10.chr8                 87917637 7823 - 129401213 I
e canFam3.chr16             18188338   0 -  59632846 C
e calJac3.chr3             190750326   0 - 190850796 C
e chlSab2.chr7             135641024   2 + 135778131 I
e papAnu2.chr5             178706572   0 + 178775436 C
e macFas5.chr5             189289605   0 + 189454096 C
e rheMac3.chr5             183896340   2 + 184069350 I
e nomLeu3.chr7b            113984504 15231 + 115148730 M
e panTro4.chr7               2084610   0 - 161824586 C

a score=0.000000
s hg38.chr4_KI270925v1_alt    526662 531 +    555799  
e mm10.chr8                 87917637 7823 - 129401213 I
e canFam3.chr16             18188338   0 -  59632846 C
e calJac3.chr3             190750326   0 - 190850796 C
e chlSab2.chr7             135641024   2 + 135778131 I
e papAnu2.chr5             178706572   0 + 178775436 C
e macFas5.chr5             189289605   0 + 189454096 C
e rheMac3.chr5             183896340   2 + 184069350 I
e nomLeu3.chr7b            113984504 15231 + 115148730 M
e ponAbe2.chr4             198320348 535 + 198332218 M
e panTro4.chr7               2084610   0 - 161824586 C

a score=76502.000000
s hg38.chr4_KI270925v1_alt    527193 967 +    555799  
s ponAbe2.chr4             198320883 993 + 198332218  
i ponAbe2.chr4             M 535 C 0
e mm10.chr8                 87917637 7823 - 129401213 I
e canFam3.chr16             18188338   0 -  59632846 C
e calJac3.chr3             190750326   0 - 190850796 C
e chlSab2.chr7             135641024   2 + 135778131 I
e papAnu2.chr5             178706572   0 + 178775436 C
e macFas5.chr5             189289605   0 + 189454096 C
e rheMac3.chr5             183896340   2 + 184069350 I
e nomLeu3.chr7b            113984504 15231 + 115148730 M
e panTro4.chr7               2084610   0 - 161824586 C

a score=1575.000000
s hg38.chr4_KI270925v1_alt    528160 8 +    555799 GAAAAGGA
s ponAbe2.chr4             198321876 8 + 198332218 GAAAAGGA
i ponAbe2.chr4             C 0 C 0
s mm10.chr8                 87925460 8 - 129401213 GAAAAAGT
i mm10.chr8                I 7823 C 0
e canFam3.chr16             18188338 0 -  59632846 C
e calJac3.chr3             190750326 0 - 190850796 C
e chlSab2.chr7             135641024 2 + 135778131 I
e papAnu2.chr5             178706572 0 + 178775436 C
e macFas5.chr5             189289605 0 + 189454096 C
e rheMac3.chr5             183896340 2 + 184069350 I
e nomLeu3.chr7b            113984504 15231 + 115148730 M
e panTro4.chr7               2084610 0 - 161824586 C

a score=4116.000000
s hg38.chr4_KI270925v1_alt    528168 3 +    555799 GAG
s panTro4.chr7               2084610 3 - 161824586 GAG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr4             198321884 3 + 198332218 GAG
i ponAbe2.chr4             C 0 C 0
s macFas5.chr5             189289605 2 + 189454096 -GG
i macFas5.chr5             C 0 I 1
s papAnu2.chr5             178706572 2 + 178775436 -GG
i papAnu2.chr5             C 0 I 1
s calJac3.chr3             190750326 3 - 190850796 GAG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87925468 3 - 129401213 GAG
i mm10.chr8                C 0 C 0
s canFam3.chr16             18188338 3 -  59632846 GAA
i canFam3.chr16            C 0 C 0
e chlSab2.chr7             135641024 2 + 135778131 I
e rheMac3.chr5             183896340 2 + 184069350 I
e nomLeu3.chr7b            113984504 15231 + 115148730 M

a score=588066.000000
s hg38.chr4_KI270925v1_alt    528171 202 +    555799 TCAGTATTTCCTATGGTCTGAAATCATCTTTCA-AATAATGGGATGTGAGACAAATGAGATGCTAC----TTATCTAGCCCTTTCCTTGATAGATTAAAAAC-GATATCAAAATCTTACTACATTGCAAAGACAGTAATTCACTCAGTTGAGAATCCACAGTATA-CAAACATATAAATCAAGGGAA--TTTTAAAAACAAT-------CATTGTGTT
s panTro4.chr7               2084613 202 - 161824586 TCAGTATTTCCTATGGTCTTAAATCATCCTTCA-AATAATGGGCTATGAAACAAATGAGATCCTAC----TTATCTAGCCTTTTCCTGGATAGATTAAAAAC-TGTATCAAAATCTTACTATATTGCAAAGACACTAATTCACTCAATTGAGAATCCACAGTATA-CAAACACATAAATCAAGGGAA--TTTTAAAACCAGT-------CATTGTGTT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr4             198321887 202 + 198332218 TCAATATTTCCTATGGTCTTAAATCATCCTTCA-AGTAATGGGCTGTGAAACAAATGAGATCCTAC----TTATCTAGCCTTTTCCTTGATAGATTAAAAAC-TATACCAAAATCCTACTATATTGCAAAGACACTAATTCACTCAATTGAGAATCCACAGCATA-CAAACATATAAATCAAGGGAA--TTTTAAAAACAAT-------CATTGTGTT
i ponAbe2.chr4             C 0 C 0
s rheMac3.chr5             183896342 206 + 184069350 TCAGTATTTCCTATGGTCTTAAATCATCCTTCA-AACAATGGGCTATGAGACAAATGAGATCCTACTTAATTATCTAGCCTTTTCCCTGATAGATTAAAAAC-TATACCAAAATCTTACTATACTGCAAAGACACTAATTCACTCAATTGAGAATCCACAACATA-TAAACATATAAATCAAGAGAA--TTTTAAAAACAAT-------AATTGTGTT
i rheMac3.chr5             I 2 C 0
s macFas5.chr5             189289608 207 + 189454096 TCAGTATTTCCTATGGTCTTAAATCATCCTTCA-AACAATGGGCTATGAGACAAATGAGATCCTACTTAATTATCTAGCCTTTTCCCTGATAGATTAAAAATATATACCAAAATCTTGCTATACTGCAAAGACACTAATTCACTCAATTGAGAATCCACAACATA-TAAACATATAAATCAAGAGAA--TTTTAAAAACAAT-------AATTGTGTT
i macFas5.chr5             I 1 C 0
s papAnu2.chr5             178706575 206 + 178775436 TCAGTATTTCCTATGGTCTTAAATCATCCTTCA-AATAATGGGCTATGAGACAAATGAGATCCTACTTAATTATCTAGCCTTTTCCCTGATAGATTAAAAAC-TATACCAAAATCTTACTATACTGCAAAGACACTAATTCACTCAATTGAGAATCCacaacata-taaacatataaatcaagagaa--ttttaaaaacaat-------cattgTGTT
i papAnu2.chr5             I 1 C 0
s chlSab2.chr7             135641026 206 + 135778131 TCAGTATTTCTTATGGTCTTAAATCATCCTTCA-AATAATAGGCTATGAGACAAATGAGATCCTACTTAATTATCTAGCCTTTTCCCTGATAGATTAAAAAC-TATACCAAAACCTTACTATACTGCAAAGACACTAATTCACTCAATTGAGAATCCACAACATA-TAAACATATAAATCAAGAGAA--TTTTAAAAACAAT-------CATTGTGTT
i chlSab2.chr7             I 2 C 0
s calJac3.chr3             190750329 206 - 190850796 TCTGTATTTCTTATGGTCTTAAATCATCCTTCA-AAGAATGGGCTATGAGAAAAATGAGATCCTACTTATTTATCTAGCCTTTTCCTTGATAGATTAAAAAC-TATATCAAAATCTTACTATATTGCAAAGACGCTGATACACTCAAGTGAGAATCCACAGTATA-CAAACATATAAATCAAGGGAA--TTTAAAAAACAAT-------CACTGTTTT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87925471 191 - 129401213 TCAGTATTT-----------AAATAATCCTCTAGGATGATGGGCTATGAAACAAATGGGCTTCAAT----CAATCTA-CTTGTTCTTCAACAGATTAAAAAT-GCAAACAAAATCTTCCCACATTTCTAGAACACTAACACACTCAT----GAATCTGC-----C-TAAACGTGCAAATCAAAGAAATTTTTTAAAGAAAATCTATATGCTTTGTGTT
i mm10.chr8                C 0 I 240
s canFam3.chr16             18188341 201 -  59632846 TCAGTATTTCCTATGGTCTTAAATTATTCTTCAAAATGATGGGCTTTGAGACAAA-----TCCTATTCATTTATGTAGCCT-TTCCTTGATAGATTAAGAATTTACATAAAAATCTT--TACATCGCAAAGATACTAATACACTCAATTGGTAATCTGCAGTACACTGAAAGTATAAATCAAGGGAA--CTTTAAAACTAGT-------CATGGTGTT
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113984504 15231 + 115148730 M

a score=307122.000000
s hg38.chr4_KI270925v1_alt    528373 123 +    555799 CAAAATGGGAAGAGTATTTCAAATTTTTTCTACATATTTCAGAATAATTTCACAGTTAAAAACCCTGTACTTTATGAAATCATTAT-------------CCAGTATTTAATAAAGTATA------------------------------TCTATGACAATATCAAC---------
s panTro4.chr7               2084815 123 - 161824586 CAAAATGGGAAGATTATTCAAAATTTTTTCTACATATTTTAGAATAATTTCACAGTTAAAAACCCTGTACTTTATAAAATCATTAT-------------CCAGTATTTAATAAAGTGTA------------------------------TCTATAACAATGTCAAC---------
i panTro4.chr7             C 0 C 0
s ponAbe2.chr4             198322089 122 + 198332218 CAAAATGGGAAGATTATTCCAAA-TTTTTCTACATATTTTAGAATAATTTCACAGTTAAAAACCCTGTACTTTATAAAATCATTAT-------------CCAGTAGTTAATAAAGTATA------------------------------TTTATAACAATATCAAC---------
i ponAbe2.chr4             C 0 N 0
s rheMac3.chr5             183896548 122 + 184069350 CAACATGGGAAGATTATTCCAAA-TTTTTCTACATATTTTAGAATAATTTCACAGTTAAAAACCCTGTACTTTATAAAATCATTAT-------------CCAGTATTTAATAAAGTATA------------------------------TCTATAACAATATCAAC---------
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189289815 122 + 189454096 CAACATGGGAAGATTATTCCAAA-TTTTTCTACATATTTTAGAATAATTTCACAGTTAAAAACCCTGTACTTTATAAAATCATTAT-------------CCAGTATTTAATAAAGTATA------------------------------TCTATAACAATATCAAC---------
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178706781 122 + 178775436 CAACATGGGAAGATTATTCCaaa-tttttctacatattttagaataatttcacAGTTAAAAACCCTGTACTTTATAAAATCATTAT-------------CCAGTATTTAATAAAGTATA------------------------------TCTATAACAATATCAAC---------
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135641232 122 + 135778131 CAACATGGGAAGATTATTCCAAA-TTTTTCTACATATTTTAGAATAATTTCACAGTTAAAAACCCTGTACTTTATAAAATCATTAT-------------CCAGTATTTAATAAAGTATA------------------------------TCTATAACAATATCAAC---------
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190750535 166 - 190850796 CAAAAGGGAAAGATTATTCCAAATTTTTTCTACATGTTTTAGAATAGTTCCACATTTTAAAACACTGTAATTTATAAAATCATTATAACAATGATGACATTGGAATTTAACAGTTTATAACAGCTTACAACATTGGAATTTAACAGTTTACTATAACAATGAAAAC---------
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18188542 132 -  59632846 CTAATGGGAAAGATTATTCCAAAATTCTTCTGCATGCTTTAGAATAATTTCACAGTTAAAATCCCTGTACCTTCTAAAATCATCAT-------------CGAATATTTAATGAAGTATA------------------------------TCTGTAGTACCAACAATTACCTAACC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87925662 240 - 129401213 I
e nomLeu3.chr7b            113984504 15231 + 115148730 M

a score=27424.000000
s hg38.chr4_KI270925v1_alt    528496 12 +    555799 GTT-----GGAATTTAA
s panTro4.chr7               2084938 12 - 161824586 ATT-----GGAATTTAA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10701853 12 +  13794794 ATT-----GGAATTTAA
i ponAbe2.chr9_random      N 0 C 0
s rheMac3.chr5             183896670 12 + 184069350 ATT-----GGAATTTAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189289937 12 + 189454096 ATT-----GGAATTTAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178706903 12 + 178775436 ACT-----GGAATTTAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135641354 12 + 135778131 ATT-----GGAATTTAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190750701 12 - 190850796 ATT-----GAAATTTAA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18188674 17 -  59632846 ATTTATAAGGTTTATAA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87925662 240 - 129401213 I
e nomLeu3.chr7b            113984504 15231 + 115148730 M

a score=1809800.000000
s hg38.chr4_KI270925v1_alt    528508 749 +    555799  
s panTro4.chr7               2084950 654 - 161824586  
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10701865 752 +  13794794  
i ponAbe2.chr9_random      C 0 C 0
s rheMac3.chr5             183896682 746 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189289949 758 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178706915 741 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135641366 732 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190750713 725 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87925902 602 - 129401213  
i mm10.chr8                I 240 I 437
s canFam3.chr16             18188691 705 -  59632846  
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113984504 15231 + 115148730 M

a score=963687.000000
s hg38.chr4_KI270925v1_alt    529257 399 +    555799 GTGGCTCTCATTACAATTGTCCTGCCTCAGGCACCCAGCAGGCGGTAATAAATGCTGGTTGAACAC--TAAAACCTTGGAATGCTACATCATTGTTCTAAA--GGATAGTCATTTT-TTAAAACATTTTGGAAGTTCTTTTGAAACTGACTTTTTAGATTATGAAAATATCT-CAGTGATAG--GT-TTTGGTTTTCCAAGTTAGACCTTATTTTATTTTAGAAACTGTCAAAAGTTATACAAAACCAAGCATGTATCTCTGTGCGTTTTGTTTTCTCTTCTCCCTTACTGCTAAGGAAGGGTTTCTTCTCTTTTCTAGGCCAAATGCTCCACAAATGAATGTGTT-AACAAATGAACAAATTAATAAATGACACGAATGGGAGCTCAAACTGCATAAAAGTATATTTA
s panTro4.chr7               2085604 397 - 161824586 GTGGCTCTCATTACAAATGTCCTGCTTCAGGCACCCAGCAGGTGGTAATAAATGCTGGTTGAACAC--TAAAACCTTGGAATGCTACATCATTATTCTTAA--GGATAGTCATATT-TTAAAACA-TTTGGAAGTTCTTTTGAAACTGACTTTTTAGATTATGAAAATATCT-CAGTGATAG--GT-TTTGGTTTTCCAAGCTAGACCTTATTTTATTTTAGAAACTTTC-AAAGTTGTACAAAACCAAGCATGTGTCTCTGTGCATTTTGTTTTCTCTCCTACCTTAATGCTAAGGAAGGGTTTCTTCTCTTTTATAGGCCAAATGCTCCACAAATGAATGTGTT-AACGAAAGAAAAAATTAATAAATGACATGAATGAAAGCTCAAACTGCATAAAAGTATATTTA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10702617 398 +  13794794 GTGGCTCTCATTACAAATATCCTGCCTCAGGCACCCAGCAGGCAGTAATAAATGCTGGTTGAACAC--TAAAACCTTGGAATGCTACATCATTATTCTAAA--GGATAGTCGTTTT-TTAAAACATTTTGGAAGTTCTTTTGAAATTGACTTTTTAGATTATGAAAATATCT-CTATGATAG--GT-TTCGGTTTTCCAAGTTAGATCTTGTTTTATTTTAGAAACTGTC-AAAGTTATACAAAACCAAGCATGTGTCTCTGTGCATTTTGTTTTCTCTCCTCCCTTAATGCTAAGGAAGGGTTTCTTCCCCTTTATAGGCCGAATGCTCCACAaatgaatgtgtt-aacgaatgaacaaattaataaatgacatgaatgGGAGCTCAAACTGCATAAAAGTATACCTA
i ponAbe2.chr9_random      C 0 C 0
s rheMac3.chr5             183897428 396 + 184069350 GTGGCTCTCATTACAATT-TCCTACCTCAGGCACCCAGCAGGTGGTAATAAATGCTGGTTGAACAC--TAAAACCTTGGAATACTACATAATTATTCTAAA--GGACAGTCATTTT-AAAAAACATTTCGGAAGTTCTTTTGAAACTGACTTTTTAGATTATGAAAATATCT-CAGTGGTAA--GTCTTTGGTTTTCCAAGTTCGATCTTATTTGATGTTAGAAACTGTCAAAAGTTATACAAAGCTGAGCGTGTATCTCTGTGCATTTTGTTCTCTCTC---CCCTAATGCCAAAGAAGGGTTTCTTCTATTTACCAGGCCAAATGTTCCACAaatgaatgtgtt-aatgactgaacaaattaataaatgacatgaatgGGAGATCAAACTGCATAAAGGCGTATTTA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189290707 397 + 189454096 GTGGCTCTCATTACAATT-TCCTACCTCAGGCACCCAGCAGGTGGTAATAAATGCTGGTTGAACAC--TAAAACCTTGGAATACTACATAATTATTCTAAA--GGACAGTCATTTTAAAAAAACATTTCGGAAGTTCTTTTGAAACTGACTTTTTAGATTATGAAAATATCT-CAGTGGTAA--GTCTTTGGTTTTCCAAGTTCGATCTTATTTGATGTTAGAAACTGTCAAAAGTTATACAAAGCTGAGCGTGTATCTCTGTGCATTTTGTTCTCTCTC---CCCTAATGCCAAAGAAGGGTTTCTTCTATTTACCAGGCCAAATGTTCCACAaatgaatgtgtt-aatgactgaacaaattaataaatgacatgaatgGGAGATCAAACTGCATAAAGGCGTATTTA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178707656 396 + 178775436 GTGGCTCTCATTACAATT-TCCTACCTCAGGCACCCAGCAGGTGGTAATAAATGCTGGTTGAACAC--TAAAACCTTGGAATGCTACATAATTATTCTAAA--Ggacagtcatttt-aaaaaacatttcggAAGTTCTTTTGAAACTGACTTTTTAGATTATGAAAATATCT-CAGTGGTAA--GTCTTTGGTTTTCCAAGTTCGATCTTATTTGATGTTAGAAACTGTCAAAAGTTATACAAAGCTAAGCGTGTATCTCTGTGCATTTTGTTCTCTCTC---CCCTAATGCCAAAGAAGGGTTTCTTCTATTTACCAGGCCAAATGTTCCACAAATGAATGTGTT-AATGActgaacaaattaataaatgacatGAATGGGAGATCAAACTGCATAAAGGCGTATTTA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135642098 392 + 135778131 GTGGCTCTCATTATAATT-TCCTACCTCAGGCACCCAGCAGGTGGTAATAAATGCTGGTTGAACAC--TAAAACCTTGGAATGCTACATAATTATTCTAAA--GGACAGTCATTTT-AAACAACATATCGGAAGTTCTTTTGAAACTGACTTTTTAGATTATGAAAACATCT-CAGTG------GTCTTCGGTTTTCCAAGTTCGATCTTATTTGATGTTAGAAACTGTCAAAAGTTATACAAAGCTGAGCATGTATCTCTGTGCATTTTGTTCTCTCTC---CCCGAATGCCAAAGAAGGGTTTCTTCTATTTACTAGGCCAAATGTTCCACAaatgaatgtgtt-aatgaatgaacaaattaataaacgacatgaatgGGAGATCAAACTGCATAAAAGCGTATTTA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190751438 396 - 190850796 GTGGCTCTCATT-CAATTGTCCTGCATCAGGCACCCAGCAAGTGGTAATAAATACTGGTTTAATAC--TAAAACCTTGGAATGCT-CATAATTATTCTAAA--GGATAGTCATTTT-AAAAAACATTTTGGAAGCTTTTTTGAAACTGACTTTTTAGAGTATTAAACTATCT-CAGTGATAG--GTCTTTGGTCTTCTACGTTAGAACTTGTTTTATCTTAGAAACTGTCAAAAGCTATACAAAACCAAGCATGTA--TCTGTGCATTTTGTTTTCCCTCCCCTGTTAATGCTAAGGAAGGGTTTCTTCTCTTTCCTAGGCCAAATGTTCCACAAATGAATGTGTT-AATGAATGAGCAAATTAGTAAATGACATGAATGGGAGATCAAACTGCTTAAAAGTATATTTA
i calJac3.chr3             C 0 I 345
s canFam3.chr16             18189396 401 -  59632846 GTGACTTCCACTATAACTGTCCTGTACAAAGCACAGTGTAGACACTAATAAATGTTGATGGAACACTTTGGAaccttggaaaggtaactagtcattccaacatggctaatgatttt-tcaagacattttggaagttcttttggaactgatttttcagatttttaaaacgtttccagtgatagcagg-ttttgccctttaagttagatcttattttattttagaaacagtcaaaagtcaagc-aagtcaagcctgTAGCTCTCTACATTCTCTCTCCTTTCCC-CCTTGATGCTAA-GAATGGTCCCTTTTCCTCCCTAGGACAATCATTCCACAAATAAATGTGTTGAATGAATGAAAAAGTGAATAAGTCAAGTAAGTGGGAGATCAG---TTATAAGGATATATTTA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87926504 437 - 129401213 I
e nomLeu3.chr7b            113984504 15231 + 115148730 M

a score=2969.000000
s hg38.chr4_KI270925v1_alt    529656 3 +    555799 CTC
s panTro4.chr7               2086001 3 - 161824586 CTT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10703015 3 +  13794794 CTT
i ponAbe2.chr9_random      C 0 C 0
s rheMac3.chr5             183897824 3 + 184069350 TTC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189291104 3 + 189454096 TTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178708052 3 + 178775436 TTC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135642490 3 + 135778131 TTA
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             18189797 3 -  59632846 TTT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87926504 437 - 129401213 I
e calJac3.chr3             190751834 345 - 190850796 I
e nomLeu3.chr7b            113984504 15231 + 115148730 M

a score=705254.000000
s hg38.chr4_KI270925v1_alt    529659 310 +    555799 AAAAATGGGAGGTGACGATTGCTAACATGTCATAACCAGACTCTGTCATGACCTCGGCAAGCCACAACATTGACAATAAAGAGGAAAGAGGATCAAGTCCCTAAATACC-CAGGTGAACTAAGACCTTCCCACGTGCCCGAAGAAGATACACTTGCAGAGGAGAAATGATGATGCAGGGGCCTGCTCCGAGATGCAGGAGGAAGTTTAATTGCCTGTGAATTTCACTGGGAAGGAAGGGATGAAACGAGGTTTGAAAGGAAATAGAGATTGTTAAACTCCTGACTAGGCGATAACTGCCGTCCTTCTCTTC
s panTro4.chr7               2086004 311 - 161824586 GAAAATGAGAGGTGACGATTGCTAACATGTCATAATCATACTCTGCCCTGACCTCGGCAAGCCACAACTTTGACAATAAAGAGGAAAGAGGATCCAGTCCCTAAATACCGCAGGTTCACTAAGACCTTCCCACGTGCCCGAAGAAGATACACTTGCAGAGGAGAAATGATGATGCAGAGGCCTGCTCCAAGATGCAGGAGGAAGTTTAATTTCCTGTGAATTTGACTGGGATGGAAGGGATGAAACGAGGTTTGAAAGGAAATAGAGATTGTTAAATTCCTGACTAGGCGATAACTGCCGTCCTTCTCTTC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10703018 311 +  13794794 AAAAATGAGAGGTGATGATTGCTAACATGTCATAACCAGACTCTGTCCTGACCTCAGCAAGCCACAACTTTGACAATAAAGAGGAAAGAGGATCAAGTCCCTAAATACCGCAGGTGCACTAAGACCTTCCCACGTGCCTGAAGATGATACACTTGCAGAGGAGAAATCATGATGCAGAGGCCTGCTCTGAGATGCAGGAGGAAGTTTAATTGCCTGTGAATTTGACTGGGATGGAAGGGATGAAACGAGGTTTCAAAGGAAATAGAGATTGTTAAACTCCTGACTAGGCAATAACTGCCCTCCTTCTCTTC
i ponAbe2.chr9_random      C 0 C 0
s rheMac3.chr5             183897827 293 + 184069350 AAAAACGAGAGGTGACGATTGCTAACACGTCATAACCAGACTCTGTCCCGACCTCGGCAAGTCACAACTTTGACAATAAAGAGGAAAGAGAATCAAGTCCCTAAATACCACAGGTGCACTAAGACCTTCTCACATGCCCGAAGAAGACACCCTCGCAGAGGAGAAATGATGATGCACAGGCCTGCTCACAGATG------------------CCTGAGAATTTGACTGGGACGGAAGGGATGAAATGAGGTTTGAAAGGAGGTAGAAATAGTTAAACTCCTGACCAGGCGATAACTGTCGTCCTTCTCTTA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189291107 293 + 189454096 AAAAATGAGAGGTGACGATTGCTAACATGTCATAACCAGACTCTGTCCCGACCTCGGCAAGTCACAACTTCGACAATAAAGAGGAAAGAGAATCAAGTCCCTAAATACCACAGGTGCACTAAGACCTTCTCACATGCCCGAAGAAGACACCCTCGCAGAGGAGAAATGATGATGCATAGGCCTGCTCACAGATG------------------CCTGAGAATTTGACTGGGACGGAAGGGATGAAATGAGGTTTGAAAGGAGGTAGAAATTGTTAAACTCCTGACCAGGCGATAACTGCCGTCCTTCTCTTA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178708055 293 + 178775436 AAAAATGAGAGGTGACGATTGCTAACATGTCATAACCAGACTCTGTCCCGACCTCGGCAAGTCACAACTTTGACAATAAAGAGGAAAGAGGATCAAGTCCCTAAATACCACAGGTGCACTAAGACCTTCTCACATGCCCGAAGAAGACACCCTTGCAGAGGAGAAATGATGATGCACAGGCCTGCTCACAGATG------------------CCTGAGAATTTGACTGGGACGGAAGGGATGAAGTGAGGTTTGAAAGGAGGTAGAAACTGTTAAACTCCTGACCAGGCGATAACTGCCGTCCTTCTCTTA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135642493 290 + 135778131 AAAAATGAGAGGTGACGATTGCTAACATGTCACAACCAGACTCTGTCCCGACCTCAGCAAGTCACAACTTTGACAATAAAGAGGAAAGAGGATCAAGTCCCTAAATACCACAGGTGCACTAAGACCTTCTCACATGCCCGAAGATG---CCCTCGCAGAGGAGAAATGATGACGCACAGGCCTGCTCAGAGATG------------------CCTCAGAATTTGACTGGGACGGAAGGGATGAAATGAGGTTTCAAAGGAGGTAGAAATCGTTAAACTCCTGACCAGGCGATAACTACCATCCTTCTCTTA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190752179 311 - 190850796 aaaAATAAGAAGTGACAGTTGCTAACATGTCATAACCAGACTCCGTCCTGATCTCGGCAACCCACAACTTTGACAATGAAGATGAAAGAGGATCGAATCCCTAAATACCACAGGTGTACTAAGACCATCCCACATGCCCAAAGAAGAGAGCCTTGCAGAGGGGAAATGATGATGAAGAGGTCTGGTCAGAGATTCAGGAGGAAGTTTAATTGCCTGTTAATTTGACTGGGATGGAAGGGATTAAACAAGGTTTGGAAGGAAATAGGAATTGTTAAACTCATGACTAGGCAATAACTGCCACCCTCTTCTTA
i calJac3.chr3             I 345 C 0
s canFam3.chr16             18189800 244 -  59632846 TAAAATAAGGGATG-TGATCATCAAACTGCTATAACCAGGCTCTATCCTAACCTTGGCAACCCACAGCTTTGACAATGAAGAGGAAAAAGGACCAAGTCCCCACCTGCCCCAAGTACACTGAAACTTCCCCATTTGACCAAGGAAGATGCCCTTGCAGATGAGAAACGATGATACAGAGACCTGATCAGAAATG--------------------------------TGGGAAGA-----------Tgaggc----------acctaggtggctcagt---tggttgggca----------tccaactcttg
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87926504 437 - 129401213 I
e nomLeu3.chr7b            113984504 15231 + 115148730 M

a score=-1309.000000
s hg38.chr4_KI270925v1_alt    529969 1 +    555799 -T
s ponAbe2.chr9_random       10703329 1 +  13794794 -T
i ponAbe2.chr9_random      C 0 C 0
s rheMac3.chr5             183898120 1 + 184069350 -T
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189291400 1 + 189454096 -T
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178708348 1 + 178775436 -T
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135642783 1 + 135778131 -T
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190752490 1 - 190850796 -T
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18190044 1 -  59632846 g-
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87926504 437 - 129401213 I
e nomLeu3.chr7b            113984504 15231 + 115148730 M
e panTro4.chr7               2086315 0 - 161824586 C

a score=-1395.000000
s hg38.chr4_KI270925v1_alt    529970 1 +    555799 -A
s rheMac3.chr5             183898121 1 + 184069350 -A
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189291401 1 + 189454096 -A
i macFas5.chr5             C 0 T 33
s papAnu2.chr5             178708349 1 + 178775436 -A
i papAnu2.chr5             C 0 T 33
s chlSab2.chr7             135642784 1 + 135778131 -A
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190752491 1 - 190850796 -A
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18190045 1 -  59632846 t-
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87926504 437 - 129401213 I
e nomLeu3.chr7b            113984504 15231 + 115148730 M
e ponAbe2.chr9_random       10703330 0 +  13794794 C
e panTro4.chr7               2086315 0 - 161824586 C

a score=-165.000000
s hg38.chr4_KI270925v1_alt    529971 10 +    555799 TCTGCCCCTG
s canFam3.chr16             18190046  8 -  59632846 tttggctc--
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87926504 437 - 129401213 I
e calJac3.chr3             190752492  0 - 190850796 C
e chlSab2.chr7             135642785  0 + 135778131 C
e papAnu2.chr5             178708350 33 + 178775436 T
e macFas5.chr5             189291402 33 + 189454096 T
e rheMac3.chr5             183898122  0 + 184069350 C
e nomLeu3.chr7b            113984504 15231 + 115148730 M
e ponAbe2.chr9_random       10703330  0 +  13794794 C
e panTro4.chr7               2086315  0 - 161824586 C

a score=8716.000000
s hg38.chr4_KI270925v1_alt    529981 42 +    555799 TGACTAGGCGGTAACTGCCGTCCTTCTCTAATATCTGCCCCT
s macFas5.chr5             189291369 42 + 189454096 TGACCAGGCGATAACTGCCGTCCTTCTCTTATATCTGCCCCT
i macFas5.chr5             T 33 T 42
s papAnu2.chr5             178708317 42 + 178775436 TGACCAGGCGATAACTGCCGTCCTTCTCTTATATCTGCCCCT
i papAnu2.chr5             T 33 T 42
s canFam3.chr16             18190054 13 -  59632846 -----aggtcgtaatttc------------------------
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87926504 437 - 129401213 I
e calJac3.chr3             190752492  0 - 190850796 C
e chlSab2.chr7             135642785  0 + 135778131 C
e rheMac3.chr5             183898122  0 + 184069350 C
e nomLeu3.chr7b            113984504 15231 + 115148730 M
e ponAbe2.chr9_random       10703330  0 +  13794794 C
e panTro4.chr7               2086315  0 - 161824586 C

a score=-31.000000
s hg38.chr4_KI270925v1_alt    530023 1 +    555799 G
s canFam3.chr16             18190067 1 -  59632846 a
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87926504 437 - 129401213 I
e calJac3.chr3             190752492 0 - 190850796 C
e chlSab2.chr7             135642785 0 + 135778131 C
e papAnu2.chr5             178708359 42 + 178775436 T
e macFas5.chr5             189291411 42 + 189454096 T
e rheMac3.chr5             183898122 0 + 184069350 C
e nomLeu3.chr7b            113984504 15231 + 115148730 M
e ponAbe2.chr9_random       10703330 0 +  13794794 C
e panTro4.chr7               2086315 0 - 161824586 C

a score=12409.000000
s hg38.chr4_KI270925v1_alt    530024 42 +    555799 TGACCAGGCGAT-AACTGCCGTCCTTCTCTAATATCTGCCCCT
s macFas5.chr5             189291369 42 + 189454096 TGACCAGGCGAT-AACTGCCGTCCTTCTCTTATATCTGCCCCT
i macFas5.chr5             T 42 T 42
s papAnu2.chr5             178708317 42 + 178775436 TGACCAGGCGAT-AACTGCCGTCCTTCTCTTATATCTGCCCCT
i papAnu2.chr5             T 42 T 42
s canFam3.chr16             18190068 33 -  59632846 tggtcaagcaatggactcccat----------tatcaggctcc
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87926504 437 - 129401213 I
e calJac3.chr3             190752492  0 - 190850796 C
e chlSab2.chr7             135642785  0 + 135778131 C
e rheMac3.chr5             183898122  0 + 184069350 C
e nomLeu3.chr7b            113984504 15231 + 115148730 M
e ponAbe2.chr9_random       10703330  0 +  13794794 C
e panTro4.chr7               2086315  0 - 161824586 C

a score=-31.000000
s hg38.chr4_KI270925v1_alt    530066 1 +    555799 G
s canFam3.chr16             18190101 1 -  59632846 a
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87926504 437 - 129401213 I
e calJac3.chr3             190752492 0 - 190850796 C
e chlSab2.chr7             135642785 0 + 135778131 C
e papAnu2.chr5             178708359 42 + 178775436 T
e macFas5.chr5             189291411 42 + 189454096 T
e rheMac3.chr5             183898122 0 + 184069350 C
e nomLeu3.chr7b            113984504 15231 + 115148730 M
e ponAbe2.chr9_random       10703330 0 +  13794794 C
e panTro4.chr7               2086315 0 - 161824586 C

a score=12186.000000
s hg38.chr4_KI270925v1_alt    530067 42 +    555799 TGACTAGGCGATAA-CTGCCGTCCTTCTCTTCCATCTGCCCCT
s macFas5.chr5             189291369 42 + 189454096 TGACCAGGCGATAA-CTGCCGTCCTTCTCTTATATCTGCCCCT
i macFas5.chr5             T 42 T 42
s papAnu2.chr5             178708317 42 + 178775436 TGACCAGGCGATAA-CTGCCGTCCTTCTCTTATATCTGCCCCT
i papAnu2.chr5             T 42 T 42
s canFam3.chr16             18190102 42 -  59632846 tgctcagtggggagtctgcttggattctctccc-tctgcctct
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87926504 437 - 129401213 I
e calJac3.chr3             190752492  0 - 190850796 C
e chlSab2.chr7             135642785  0 + 135778131 C
e rheMac3.chr5             183898122  0 + 184069350 C
e nomLeu3.chr7b            113984504 15231 + 115148730 M
e ponAbe2.chr9_random       10703330  0 +  13794794 C
e panTro4.chr7               2086315  0 - 161824586 C

a score=-125.000000
s hg38.chr4_KI270925v1_alt    530109 1 +    555799 G
s canFam3.chr16             18190144 1 -  59632846 c
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87926504 437 - 129401213 I
e calJac3.chr3             190752492 0 - 190850796 C
e chlSab2.chr7             135642785 0 + 135778131 C
e papAnu2.chr5             178708359 42 + 178775436 T
e macFas5.chr5             189291411 42 + 189454096 T
e rheMac3.chr5             183898122 0 + 184069350 C
e nomLeu3.chr7b            113984504 15231 + 115148730 M
e ponAbe2.chr9_random       10703330 0 +  13794794 C
e panTro4.chr7               2086315 0 - 161824586 C

a score=10475.000000
s hg38.chr4_KI270925v1_alt    530110 42 +    555799 TGACTAGGCGATAACTGCCGTCCTTCTCTTCCATCTGCCCCT
s macFas5.chr5             189291369 42 + 189454096 TGACCAGGCGATAACTGCCGTCCTTCTCTTATATCTGCCCCT
i macFas5.chr5             T 42 T 42
s papAnu2.chr5             178708317 42 + 178775436 TGACCAGGCGATAACTGCCGTCCTTCTCTTATATCTGCCCCT
i papAnu2.chr5             T 42 T 42
s canFam3.chr16             18190145 23 -  59632846 ---------------tg----cctactctccccccaccctct
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87926504 437 - 129401213 I
e calJac3.chr3             190752492  0 - 190850796 C
e chlSab2.chr7             135642785  0 + 135778131 C
e rheMac3.chr5             183898122  0 + 184069350 C
e nomLeu3.chr7b            113984504 15231 + 115148730 M
e ponAbe2.chr9_random       10703330  0 +  13794794 C
e panTro4.chr7               2086315  0 - 161824586 C

a score=-31.000000
s hg38.chr4_KI270925v1_alt    530152 1 +    555799 G
s canFam3.chr16             18190168 1 -  59632846 a
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87926504 437 - 129401213 I
e calJac3.chr3             190752492 0 - 190850796 C
e chlSab2.chr7             135642785 0 + 135778131 C
e papAnu2.chr5             178708359 42 + 178775436 T
e macFas5.chr5             189291411 42 + 189454096 T
e rheMac3.chr5             183898122 0 + 184069350 C
e nomLeu3.chr7b            113984504 15231 + 115148730 M
e ponAbe2.chr9_random       10703330 0 +  13794794 C
e panTro4.chr7               2086315 0 - 161824586 C

a score=7108.000000
s hg38.chr4_KI270925v1_alt    530153 31 +    555799 TGACTAGGCGATAACTGCCGTCCTTCTCTAA
s macFas5.chr5             189291369 31 + 189454096 TGACCAGGCGATAACTGCCGTCCTTCTCTTA
i macFas5.chr5             T 42 C 0
s papAnu2.chr5             178708317 31 + 178775436 TGACCAGGCGATAACTGCCGTCCTTCTCTTA
i papAnu2.chr5             T 42 C 0
s canFam3.chr16             18190169 22 -  59632846 aaataaaaaaataaa---------tctttaa
i canFam3.chr16            C 0 I 28
e mm10.chr8                 87926504 437 - 129401213 I
e calJac3.chr3             190752492  0 - 190850796 C
e chlSab2.chr7             135642785  0 + 135778131 C
e rheMac3.chr5             183898122  0 + 184069350 C
e nomLeu3.chr7b            113984504 15231 + 115148730 M
e ponAbe2.chr9_random       10703330  0 +  13794794 C
e panTro4.chr7               2086315  0 - 161824586 C

a score=4438.000000
s hg38.chr4_KI270925v1_alt    530184 11 +    555799 TATCTGCCCCT-----
s panTro4.chr7               2086315 11 - 161824586 TATCTGCCCCT-----
i panTro4.chr7             C 0 C 0
s macFas5.chr5             189291400 11 + 189454096 TATCTGCCCCT-----
i macFas5.chr5             C 0 T 42
s papAnu2.chr5             178708348 11 + 178775436 TATCTGCCCCT-----
i papAnu2.chr5             C 0 T 42
s canFam3.chr16             18190219 16 -  59632846 TGAATTCCCCATAAAT
i canFam3.chr16            I 28 C 0
e mm10.chr8                 87926504 437 - 129401213 I
e calJac3.chr3             190752492  0 - 190850796 C
e chlSab2.chr7             135642785  0 + 135778131 C
e rheMac3.chr5             183898122  0 + 184069350 C
e nomLeu3.chr7b            113984504 15231 + 115148730 M
e ponAbe2.chr9_random       10703330  0 +  13794794 C

a score=-820.000000
s hg38.chr4_KI270925v1_alt    530195 1 +    555799 -G
s panTro4.chr7               2086326 1 - 161824586 -G
i panTro4.chr7             C 0 C 0
s canFam3.chr16             18190235 1 -  59632846 T-
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87926504 437 - 129401213 I
e calJac3.chr3             190752492 0 - 190850796 C
e chlSab2.chr7             135642785 0 + 135778131 C
e papAnu2.chr5             178708359 42 + 178775436 T
e macFas5.chr5             189291411 42 + 189454096 T
e rheMac3.chr5             183898122 0 + 184069350 C
e nomLeu3.chr7b            113984504 15231 + 115148730 M
e ponAbe2.chr9_random       10703330 0 +  13794794 C

a score=12885.000000
s hg38.chr4_KI270925v1_alt    530196 32 +    555799 TGACTAGGCGATAACTGCCATCCTTCT---CTTCC-
s panTro4.chr7               2086327 32 - 161824586 TGACTAGGTGATAACTGCCCTCCTTCT---CTTCT-
i panTro4.chr7             C 0 C 0
s macFas5.chr5             189291369 32 + 189454096 TGACCAGGCGATAACTGCCGTCCTTCT---CTTAT-
i macFas5.chr5             T 42 C 0
s papAnu2.chr5             178708317 32 + 178775436 TGACCAGGCGATAACTGCCGTCCTTCT---CTTAT-
i papAnu2.chr5             T 42 C 0
s canFam3.chr16             18190236 34 -  59632846 TGACTGG--AACAACAGAAATTAATCTGGGCTTAAC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87926504 437 - 129401213 I
e calJac3.chr3             190752492  0 - 190850796 C
e chlSab2.chr7             135642785  0 + 135778131 C
e rheMac3.chr5             183898122  0 + 184069350 C
e nomLeu3.chr7b            113984504 15231 + 115148730 M
e ponAbe2.chr9_random       10703330  0 +  13794794 C

a score=7315.000000
s hg38.chr4_KI270925v1_alt    530228 10 +    555799 ATCTGCCCCT-
s panTro4.chr7               2086359 10 - 161824586 ATCTGCCCCT-
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10703330 10 +  13794794 ATCTGCCCCT-
i ponAbe2.chr9_random      C 0 C 0
s macFas5.chr5             189291401 10 + 189454096 ATCTGCCCCT-
i macFas5.chr5             C 0 T 9
s papAnu2.chr5             178708349 10 + 178775436 ATCTGCCCCT-
i papAnu2.chr5             C 0 T 9
s canFam3.chr16             18190270 10 -  59632846 -TCTTGGACTC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87926504 437 - 129401213 I
e calJac3.chr3             190752492  0 - 190850796 C
e chlSab2.chr7             135642785  0 + 135778131 C
e rheMac3.chr5             183898122  0 + 184069350 C
e nomLeu3.chr7b            113984504 15231 + 115148730 M

a score=12986.000000
s hg38.chr4_KI270925v1_alt    530238 34 +    555799 GTGACTAGGCGATAACTGCCGTCCTTCTCTGCTG
s panTro4.chr7               2086369 34 - 161824586 GTGACTAGGCGATAACTGCCCTCCTTCTCTTCTA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10703340 34 +  13794794 GTGACTAGGCGATAACTGCCCTCCTTCTCTTCTA
i ponAbe2.chr9_random      C 0 C 0
s canFam3.chr16             18190280 34 -  59632846 TCGACAAGATAATAACTGCCATCCATCTTTTATA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87926504 437 - 129401213 I
e calJac3.chr3             190752492  0 - 190850796 C
e chlSab2.chr7             135642785  0 + 135778131 C
e papAnu2.chr5             178708359  9 + 178775436 T
e macFas5.chr5             189291411  9 + 189454096 T
e rheMac3.chr5             183898122  0 + 184069350 C
e nomLeu3.chr7b            113984504 15231 + 115148730 M

a score=204550.000000
s hg38.chr4_KI270925v1_alt    530272 81 +    555799 TCTGCCCCTACCTTGGGCCCCAAATGGCTCAGCACTA-A-AGTGCCTTGAGC--AGGCTCCA------GCCCAAAGG------TGGCCTCCATGGTT
s panTro4.chr7               2086403 81 - 161824586 TCTGCCCCTACCTTGGGCCCCAAGTGACTCAGCACTA-A-AGTGCCTTAAGC--AGGCTCCA------GCCCAAAAG------TGGCCTCCATGGGC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10703374 81 +  13794794 TCTGCCCCTACCTTGGGCCCCAAATGACTCAGCACTA-A-AGTGCCTTGAGC--AGGCTCCA------GCCCAAAAG------TGGCCTCCATGGGC
i ponAbe2.chr9_random      C 0 C 0
s rheMac3.chr5             183898122 89 + 184069350 TCTGCCCCTACCTTGGGCTCCAAATAACTCAGAACTA-A-AGTGCCTTGAGCAGAGGCTCCGGTGACTGCCCAAAAG------TGGCCTTCATGGGC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189291402 89 + 189454096 TCTGCCCCTACCTTGGGCTCCAAATAACTCAGAACTA-A-AGTGCCTTGAGCAGAGGCTCCGGTGACTGCCCAAAAG------TGGCCTTCATGGGC
i macFas5.chr5             T 9 C 0
s papAnu2.chr5             178708350 89 + 178775436 TCTGCCCCTACCTTGGGCTCCAAATAACTCAGAACTA-A-AGTGCGTTGAGCAGAGGCTCCGGTGACTGCCCAAAAG------TGGCCTTCATGGGC
i papAnu2.chr5             T 9 C 0
s chlSab2.chr7             135642785 89 + 135778131 TCTGCCCCTACCTTGGGCTCCAAATAACTCAGAACTA-A-AGTGCCTTGAGCAGAGGCTCTGGTGACTGCCCAAAAG------TGGCCTTCATGGGC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190752492 90 - 190850796 TCGGCCCCTACCTTGGGCCCCAAATAACTCAGCACTA-ACAGTGCCTTGAGCAGAGGCTCCAGTGACTGCCTAAAAG------TGGCCTTCAAGAGC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18190314 90 -  59632846 TCTGCTACTACCTCAGGCTCCAGATAACTCAGGACTAGA-AATTCTTTGACCAGAGATCCCA------ATCTAAATGCCTTTATGGCCTTCCAAAGC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87926504 437 - 129401213 I
e nomLeu3.chr7b            113984504 15231 + 115148730 M

a score=3651099.000000
s hg38.chr4_KI270925v1_alt    530353 1298 +    555799  
s panTro4.chr7               2086484 1301 - 161824586  
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10703455 1301 +  13794794  
i ponAbe2.chr9_random      C 0 C 0
s rheMac3.chr5             183898211 1307 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189291491 1310 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178708439 1309 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135642874 1310 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190752582 1273 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87926941 1314 - 129401213  
i mm10.chr8                I 437 I 111
s canFam3.chr16             18190404 1253 -  59632846  
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113984504 15231 + 115148730 M

a score=489726.000000
s hg38.chr4_KI270925v1_alt    531651 175 +    555799 GAGGATGTTA-----------------------------------------------------------------------------------------------CACTGTTGTTTATT---------------TGTGTGTTCTAA------------TCTGTAGATAAAC---AGCAAGATCTCTTTTATTTCATGATTCCAAGTCTCAGGCCACAGCAGGACAAGTAT---------CAAAACATCTATTCTCAATTCGGAGTTGAGATTTCTAATAAGAATTCTATTTTCTCCATAATC-ATAAAAT
s panTro4.chr7               2087785 171 - 161824586 GAGGATGTTA-----------------------------------------------------------------------------------------------CACTGATGTTT-------------------GTGTGTTCTAA------------TCTGTAGATAAAC---AGCAAGGTCTCTTTTAATTCATGATTCCAAGTCTCAGGCCACAGCAGGACAAGTGT---------CAAAACATCTATTCTCAATTCGGAGTTGAGATTTCTAACAAGAATTCTATTTTCTCCATAATC-ATAAAAT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10704756 175 +  13794794 GAGGATCTTA-----------------------------------------------------------------------------------------------CGCTGATGTTTATT---------------TGTGTGTTCTAA------------TCTGTAGATAAAC---AGCAAGGTCTCTTTTACTTCATGATTCCAAGTCTCAGGCCACAGCAGGACAAGTAT---------CAAAACATCTATTCTCAATTCGGAGTTGAGATTTCTAATAAGAATTCTATTTTCTCCATAATC-ATAAAAT
i ponAbe2.chr9_random      C 0 C 0
s rheMac3.chr5             183899518 176 + 184069350 GAGGATATTA-----------------------------------------------------------------------------------------------CACTGATGTTTATT---------------TGTGTGTCCTAA------------TCTGTAGATAAAC---ACCAGGGTCTCTTTTAATTCATGATTCCAAGTTTCCGGCCACAGCAGTACAAGTAT---------CAAAACATCTATTCTCAATTCAGAGTTGAGATTTCTAATAAGAATTCCATTTTCTCCATAATCAAAAAAAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189292801 176 + 189454096 GAGGATATTA-----------------------------------------------------------------------------------------------CACTGATGTTTATT---------------TGTGTGTCCTAA------------TCTGTAGATAAAC---ACCAGGGTCTCTTTTAATTCATGATTCCAAGTTTCCGGCCACAGCAGTACAAGTAT---------CAAAACATCTATTCTCAATTCAGAGTTGAGATTTCTAATAAGAATTCCATTTTCTCCATAATCAAAAAAAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178709748 176 + 178775436 GAGGATATTA-----------------------------------------------------------------------------------------------CACTGATGTTTATT---------------TGTGTGTCCTAA------------TCTGTAGATAAAC---AGCAGGGTCTCTTTTAATTCATGATTCCAAGTTTCCGGCCACAGCAGTACAAGTAT---------CAAAACATCTATTCTCAATTCAGAGTTGAGATTTCTAATAagaattccattttctccataatCaaaaaaaT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135644184 175 + 135778131 GAGGACGTTA-----------------------------------------------------------------------------------------------CACTGATGTTTATT---------------TGTGTGTCCTAA------------TCTGTAGATAAAC---ACCAGGGTCTCTTTTAATTCATGATTCCAAGTTTCTGGCCACAGCAGTACAAGTAT---------CAAAACATCTATTCTCAATTCAGAGTTGAGATTTCTAATAAGAATTCTATTTTCTCCATAATC-CAAAAAT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190753855 175 - 190850796 GAGGATGTGA-----------------------------------------------------------------------------------------------AGTTGATGTTTATT---------------TGTGTGTTCTAA------------TCTGTAGATGAAT---AGCAAGGTCTCTTTTAATTCATGATTCCAAGTCTCAGGCCACAGTAGTACAAGTAT---------CAAAACATCTATTCTCAGTTCAGAGTTAAGATTTCTAATAAGAATTCTATTTTCTCCATAATC-ATAAAAT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87928366 290 - 129401213 gaggatgttaaaatccctgaacctagagttataggaacttgtgggccacagaccatgggtgctaagaagtcttagttctctggaagatcatcaaggttttgtaaccactgagatatctctccagctccCTTTCATGTGTTTCCTAA------------ACTGCAGGTG-AC---AGCAAGGCCTTTTTTCATTCTTAATTCCAAGTT--GGACCACAGCATCA-AAGTATATTAAAAAAAAAAAAAACTATTCACAACTTGGAGTCAGGAATTCCAATAAAAATTCTATTTTCTCCCTAATC-ATGAAAT
i mm10.chr8                I 111 C 0
s canFam3.chr16             18191657 190 -  59632846 GGGGATTCCA-----------------------------------------------------------------------------------------------TATTGGTACATAAG---------------AGTATTCTTTAACTCTCTTAAGTTTTTTTAGGTAGACTGAAGGAAGATCCCCTTTAATTTATAATTCCAAGGCTCTGGTCACAGCAGGACATGTAT---------CAAAATACTGATTCTCAACTTGGGGCTGAGAATTCTAATAAGAATTCTATTTGCTCCATAATC-ATAAAAT
i canFam3.chr16            C 0 I 371
e nomLeu3.chr7b            113984504 15231 + 115148730 M

a score=941689.000000
s hg38.chr4_KI270925v1_alt    531826 340 +    555799 AGCACCAGGAAAAGTC----AATATCTATCTTAAAATACAGACCATTGAAAAGTA-GATCTTTCTGCCCTTAACATAAACAAACTGTAAAATCTGAAGTTAAAATTATTCCTTGTACCAGC---CTCCTAA-TTTACCCAGAGTTAACAGAAAAG-TTATAGCAGTGCAGGAAGCTCTGAGGCTTTGATGGGTGTAGATATAGACATACAAACCTATCATTTCACACTAGTCAGAATACCAGTCATAGAAATCCCCGCAGGGAA-AAA-----TCTGAAGGTATCTGG---TCTTATGGACTGTATAATTAAACTTTCTTATCATTGTACCTAAACCAAAA----TATGCTTCCTATACAAAG
s panTro4.chr7               2087956 329 - 161824586 AGCAACCGGAAAAGTC----AATATCT----TAAAATACAGATCATTAAAGAGTA-GATCTTTCTGCCCTTA-CATAAACAAACTGTAAAATCTGAAGTTAAAATTATTCCTTGTACCAGC---CTCCTAA-TTTACCCAGAGTTGACAGAAAAG-TTATAGCAGTGCATGAAGCTCTGAGGTTTTGATGGGTGTAGATATAGACATCCAAACCTGTCATTTCACACTA---------CGAGTCATAGAAATCCC-ACAGGAAA-AAT-CATTTCTGGAGGTATCTGG---TCTTATGGATTATAAAATTAAACTTTCTTATCATTGTACCTAAACTGAAA----TATGATTCCTATAAAAAG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10704931 339 +  13794794 AGCACCAGGAAAAATC----AATATCT----TAAAATACAGATCATTTAAAAGTA-GATCTTACTGCACTTAACATAAACAAACTGTAAAATCTAAAGTTAAAATTATTCCTTGTGCCACC---CTCCTAA-TTTACCCAGAGTTAACAGAAAAG-TTATAGCAGCGCATGAAGCTCTGAGGTTTTGATGGGTGTAGATATAGACATCCAAACCTGTCATTTCACACTAGTCAGAATATCAGTCATAGAAATCCC-ACAGGAAA-AAT-CATTTCTGAAGGTATCTGG---TCTTATGGATTATAAAATTAAACTTTCTTATCATTGTACCTAAACCGAAA----TATGCTTCCTATACAAAG
i ponAbe2.chr9_random      C 0 C 0
s rheMac3.chr5             183899694 340 + 184069350 AGCATCAGGAAAAGTC----AACATCT----AAAAATACAGATCATTGAAAAGTA-GATCCTTCTGCCCTTAACAGAAACAAACTGTAAAATCTGAAGTTAAAATTATTCCTTGTACCAGC---CTCCTGA-TTTACCCAGAGTTAACAGAAAAG-TTATAGCAGTGCATGAAGCTCTGATGCTTTGATGGGTGTAGACACAGACATCCAGACCTGTCATTTCACACTGGGTGGAATACCAGTCATGGAAATCCC-ACAGGGAA-AAATCATTTCTGAAGGTATCTGG---TCTTATGGATTATAAAATTAAACTTTCTTATCATTGAACCTAAACCAAAA----TAAGCTTCCTATACAAAG
i rheMac3.chr5             C 0 I 145
s macFas5.chr5             189292977 340 + 189454096 AGCATCAGGAAAAGTC----AACATCT----AAAAATACAGATCATTGAAAAGTA-GATCCTTCTGCCCTTAACAGAAACAAACTGTAAAATCTGAAGTTAAAATTATTCCTTGTACCAGC---CTCCTGA-TTTACCCAGAGTTAACAGAAAAG-TTATAGCAGTGCATGAAGCTCTGATGCTTTGATGGGTGTAGACACAGACATCCAGACCTGTCATTTCACACTGGGTGGAATACCAGTCATGGAAATCCC-ACAGGGAA-AAATCATTTCTGAAGGTATCTGG---TCTTATGGATTATAAAATTAAACTTTCTTATCATTGAACCTAAACCAAAA----TAAGCTTCCCATACAAAG
i macFas5.chr5             C 0 I 145
s papAnu2.chr5             178709924 340 + 178775436 AGCATCAGGAAAAGTC----AACATCT----AAAAATACAGATCATTGAAAAGTA-GATCCTTCTGCCCTTAACAGAAACAAACTGTAAAATCTGAAGTTAAAATTATTCCTTGTACCAGC---CTCCTGA-TTTACCCAGAGTTAACAGAAAAG-TAATAGCAGTGCATGAAGCTCTGACGCTTTGATGGGTGTAGACACAGACATCCAGACCTGTCATTTCACACTGGGTGGAATACCAGTCAAGGAAATCCC-ACAGGGAA-AAATCATTTCTGAAGGTATCTGG---TCTTATGgattataaaattaaactttcttATCATTGAACCTAAACCAAAA----TAAGCTTCCTATACaaag
i papAnu2.chr5             C 0 I 146
s chlSab2.chr7             135644359 340 + 135778131 AGCATCAGGAAAAGTC----AACATCT----AAAAATACAGATCATTGAAAAGTA-GATCCTTCTGCCCTTAACAGAAACAAACTGTAAAATCTGAAGTTAAAATTATTCCTTGTACCAGC---CTCCTGA-TTTACTCAGAGTTAACAGAAAAG-TTATAGCAGTGCATGAAGCTCTGACGCTTTGATGGGTGTGGACACAGACATCCAGACCTGTCATTTCACACTGGGCGGAATACCAGTCACGGAAATCCC-ACAGGGAA-AAATCATTTCTGAAAGTATCTGG---TCTTATGGATTATAAAATTAAACTTTCTTATCATTGAACCTAAACCGAAA----TAAGCTTCCTATACAAAG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190754030 340 - 190850796 AGGAT-AAGAAAAGTC----AATATCT----TAAAATAGAGATCATTGAAAAGTA-GATCTTTCTGCCCTTAACATAAACAAACTGCAAAATCTGGAGTTAAAGTTATTCCTTGTAGCAGC---CTCCTGCTTTTACCCAGAGTTAACAGAAAAGTTTATAGCCTTGCATGAAGCTTTGAGGCTTTGATGGGTGTAGATATAGATATCTAAACCTATCATTTCACACTAGTCAGAATACCAGTCCTAGAAATCCC-ACATGGAA-AAACCATTCCTGAAGGTATCTGG---CCTTATGGATTATAAAATTAACCTTTCCTATCATTGTACCTAAACCAAAG----TATGCTTCCTATAAAAG-
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87928656 346 - 129401213 GGCACCAAGGAAAGTCTTTTGGCAT-T----GACTGTATACACCACTGAAAAACATGATTCTTCTGCCTAGTGCATAAACAGTTGGGAAACT---GAGCAAAAGTTCTTTCATGTCCCACCACGCCGCAAC-TTTCCGCAGAGTCAGCAGAAAAA-GAATAGCATTGCATAGAGCTGTAAAGCTTTGATGAGTTTTAATACAGACACTCAAAACTATTTTTCCTCAATAATCAGAATGCCAGTCATTG-AATCCC-ATATGGAATAAAATGCACCTAGAGGTATATGGCCTCCTTACACCTTGTAAATCCCAACTTTCTTATCACTTTGTCCAGACTCAGT----TATACTAGC-ATATAAAG
i mm10.chr8                C 0 C 0
s canFam3.chr16             18192218 349 -  59632846 AGTACCAAGAAAAATGTTTTGACAAAT----TAAAATATAGATCTTTGGAAAGCA-AATCCTTCTACCCTTCACATAAACAAATTGAATATTTTGAAGTAAAATTTACCTCCAGTACCATC---ACCCTACCTTTATTCAGAGTTGACAGAAAAG-TTGTAGTGTTACATGAAGCTTTGTGGCTATGATGGGTTTAGATACAGACATCTAAACCTATTGTTTCACACTAATCAAAATATCAACCATAGAAGTCTC-AAATGGGA-AGGCCATTTCTGAAGATATCTGG---TCTTCTGGATTGCAAATTTCAACTTTCTTATCACTGTGCCCAAACTAGGAAAGCTATACTTCCCATACAAGT
i canFam3.chr16            I 371 C 0
e nomLeu3.chr7b            113984504 15231 + 115148730 M

a score=31709.000000
s hg38.chr4_KI270925v1_alt    532166 10 +    555799 AAGGTTTCTT
s panTro4.chr7               2088285 10 - 161824586 AAGGTTTCTT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10705270 10 +  13794794 AAGGTTTCTT
i ponAbe2.chr9_random      C 0 C 0
s rheMac3.chr5             183900179 10 + 184069350 aAGGTTTCTT
i rheMac3.chr5             I 145 C 0
s macFas5.chr5             189293462 10 + 189454096 aAGGTTTCTT
i macFas5.chr5             I 145 C 0
s papAnu2.chr5             178710410 10 + 178775436 AAGGTTTCTT
i papAnu2.chr5             I 146 C 0
s chlSab2.chr7             135644699 10 + 135778131 ACGGTCTCTT
i chlSab2.chr7             C 0 I 144
s calJac3.chr3             190754370 10 - 190850796 AAGGTTTCTT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87929002  8 - 129401213 --AGTCTCTT
i mm10.chr8                C 0 I 2
s canFam3.chr16             18192567 10 -  59632846 TATGTTTCTT
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113984504 15231 + 115148730 M

a score=20881.000000
s hg38.chr4_KI270925v1_alt    532176  8 +    555799 ------------------TCAAGAGT
s panTro4.chr7               2088295  8 - 161824586 ------------------TCAAGAGT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10705280  8 +  13794794 ------------------TCAAGAGT
i ponAbe2.chr9_random      C 0 C 0
s rheMac3.chr5             183900189  8 + 184069350 ------------------TCAAGAGT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189293472  8 + 189454096 ------------------TCAAGAGT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178710420  8 + 178775436 ------------------TCAAGAGT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135644853  8 + 135778131 ------------------TCAAGAGT
i chlSab2.chr7             I 144 C 0
s calJac3.chr3             190754380  8 - 190850796 ------------------TCAAGAGT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87929012  8 - 129401213 ------------------CTAAAAGT
i mm10.chr8                I 2 I 231
s canFam3.chr16             18192577 26 -  59632846 TTGAGTAAAGATGTTTTCTTTTGAGT
i canFam3.chr16            C 0 C 0
e nomLeu3.chr7b            113984504 15231 + 115148730 M

a score=153607.000000
s hg38.chr4_KI270925v1_alt    532184 114 +    555799 TAAGACTGCCTCCTGCCATCCTCCTTAacacacacacacacacatgcacacac-acacacacacacacaca------cagagagagagagagagaattgagagCAT------TAGTCCTTTTCTCCC
s panTro4.chr7               2088303 110 - 161824586 TAAGACGACCTCCCGCCATCCCCCTTAacacacacacacacaca----cacac-acacacacagagagaga------gagagagagagagagagaATTGAGAGCAT------TAGGGGTTTTCTCCC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10705288 108 +  13794794 TAAGACCACCTTCCGCCATCCCCCTTAacacacacacacaca------cacac-acacacacacacacaca------GAAAGAGAGAGAGAGAGAATTGAGAGCAT------TAGTGGTTTTCTCCC
i ponAbe2.chr9_random      C 0 C 0
s rheMac3.chr5             183900197  82 + 184069350 TAAGACTGCCTCCTGTCATCCCCCTTAacacacacacacaca------cacac---------------------------------acacaGAGAATTGAGAGCAT------TAGTCCTTTTCTCCC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189293480  76 + 189454096 TAAGACTGCCTCCTGTCATCCCCCTTA------ACACACACA------CACAC---------------------------------AGAGAGAGAATTGAGAGCAT------TAGTCCTTTTCTCCC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178710428  96 + 178775436 TAAGACTGCCTCCTGTCATCccccttaacacacacacacaca------cacac-acacac------------------acacagagagagagagaattgagaGCAT------TAGTTCTTTTCTCCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135644861  90 + 135778131 TAAGACCGCCTCCTGTCATCCCCCTTcacacacacacacaca------cagag-------------------------agagagagagagagagaattgagagCAT------TAGTCCTTTTCTCCC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190754388 120 - 190850796 TAAGGCCTCCTCCCACCATCCCCCTTcacacacacacacaca------cacac-acacacacacacacacacacaGTgagacagagagagagagagagggagaCATACACAATGTCCTTTTTTTCCC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18192603 107 -  59632846 AAAGAC--CTCACTGCTACCCTCCAaaaacaaaacaaaataa------aacaaaacaaaacaacaacaaca------aaaaaaaaaaaacagaaAATTGACAGCAT------TGCTCCCTTCCTCCC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87929020 231 - 129401213 I
e nomLeu3.chr7b            113984504 15231 + 115148730 M

a score=1285325.000000
s hg38.chr4_KI270925v1_alt    532298 593 +    555799  
s panTro4.chr7               2088413 625 - 161824586  
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10705396 622 +  13794794  
i ponAbe2.chr9_random      C 0 C 0
s rheMac3.chr5             183900279 602 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189293556 598 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178710524 601 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135644951 592 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190754508 600 - 190850796  
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87929020 231 - 129401213 I
e canFam3.chr16             18192710   0 -  59632846 C
e nomLeu3.chr7b            113984504 15231 + 115148730 M

a score=1133124.000000
s hg38.chr4_KI270925v1_alt    532891 429 +    555799 CTCTATATAAAAATAAGTGCACTTTCCCCTCCTTTCTTCAGTGACTAGAAAACGTCCATATTTTTAA---AATAATCAAATAATAATTTTAGAGAGCAACAGCCCTCAACTCTTTGCTGGTGCTTATCACACTGCCTTTCTTCACTCCATTCTTAGCTCTGCTAGTTTCTTCTTGTCTGTAATGATAATAAGGGAATGTGGGTGGGTCAGCACTTCTGTGTAGGTCCCCTTTCCAAATTTACCTT-CCAAAAAGCCAACCAAATAAACAACCAAAAAA-TTGTGCAACAAAACACAAATAGCGTTCCAATAGC-----AAGTGATGCATTCACCTGAGATTAAGTGGTTTTAGGTGGTCAGTAACAAAATGCTGCTTTGCTGTCATAGTAGAAAGGCAACAAATTCTTCAAAGAAACCAAGAAGGTTACAACCTTGACA
s panTro4.chr7               2089038 434 - 161824586 CTCCATATAAAAATAAGTGCACTTTCCCCTCCTTCCTTCAGTGACTAGAAAAATTCCATACTTTTAA---AATAATCAAATAATAATTT-AGAGAGCAACAGCCCTCAACTCTTTGCTGGTGCTTATCACACTGCCTTTCTTCACTCCATTCTTAGCTCTGCTAGTTTCTTCTTGTCTGTAATGATAATAAGGGAATGTGGGTGGGTCAGCACTTCTGTGTAGGTCCTCTTTTCAAATTTGCCTT-CCAAAAATCCAACCAAATAAACAACCAAAAAAATTGTGCAACAAAACACAAATAGCATTCCAACAGCTTGGCAAGTGATGCATTCACCTGAGATTAAGTGGTTTTAGGTGGTCAGTAGCAAAATGCTGTTTTGCTGTCTTAGTAGAAAGGCAACAAATTATTCAAAGAAACCAAGAAGGTTACAACCTTGACA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10706018 433 +  13794794 CTCCATATAAAAATAAGTGCACTTTCCCCTCCTTTCTTCAGTGACTAGAAAACTTCCATACTTTTAA---AATAATCAAATAATAATTT-AGAGATCAACAGCCCTCAACTCTTTGCTGGTGCTTATTACACTGACTTTCTTCACTCAATTCTTAGCTATGCTAGCTTCTTCTTGTTTGTAATGATAATAAGGGAATGTTGGTGGGTCAGTACTTCTGTGTAGGTCCCCTTTCCAAATTTGCCTT-CCAAAAAGACAACCAAATAAACAACCAAAAAA-TTGTGCAACAAAACACAAATAGCATTCCAACAGCTTGGCAAGTGGTGCATTCACCTGAGATTAAGTGGTTTTAGGTGGTCAGTAACAAAATGCTGCTTCGCTGTCTTAGTAGAAGGGCAACAAATTCTTCAAAGAAACCAAGAAGGTTACAACCTTGACA
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chr7b            114000054 429 + 115148730 CTCTACATAAAATTAAGTGCGCTTTCCCCTCCTTTCTTCAGTGACTAGAAAACTTCCATACTTTTAA---AATAATCAAATAATAATTTTAGAGAGCAACAGCCCTCAACTCTTTGCTGGTGCTTATCACACTGCCTTTCTTCACTCCATTCTTAGCTCTGCTAGTTTCTTCTTGTCTGTAATGATAATAAGGGAATGTGGGTGGGTCAGCACTTCTGTGTAGGTCCCCTTTCCAAATTTGCCTT-CCAAAAAGCCAACCAAATAAGCAACTAAAAAA-TAGTGCAACAAAACACAAATAGCATTCCAACAGC-----AAGTGATGCATTCACCTGAGATTAAGTGATTTTAGGTGTTCGGTAACAAATTGCTGCTTTGCTGTCATAGTAGAAAGGCAACAAATTCTTCAAAGAAACCAAGAAGGTTACAACACTGACA
i nomLeu3.chr7b            M 15231 C 0
s rheMac3.chr5             183900881 424 + 184069350 CTCTATATAAAAATAAGTGCACTTTCCGCTCCTTTCTTCAGTGACTAGAAAACTTCCATACTTTCAA---AATAATCAAATAATAATTTTAGAGAGCAACAGCCCTCAGCTCTTTGCTGGTGCTTATCACACT-CCTTTCTTCACTCCACTCTTAGCTCTGCTTGTTCCTTCTTGTCTGGAA-GATAAT--GAGAATGTGGGCGGGTCGGCCCTTCTGTGTAGTTCCCCTTTCCACATTTCCCCT-CCAAAAAGCCAGCCAAGCACACAACCAAGAAA-CAGTGCAACAAAACACAGACGGCATTCCCACAGCGCAGTGAGTGGCGCCTTCACCTGAGATTACGTGGTTTTCG--GGTCAGTAACAAAATGCTGCTTCGCT-TCATAGTAGAAAGGCAGCAAATTCTTCAAAAAAACC---AAGGTCACAACCTCGACA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189294154 426 + 189454096 CTCTATATAAAAATAAGTGCACTTTCCGCTCCTTTCTTCAGTGACTAGAAAACTTCCATACTTTTAA---AATAATCAAATAATAATTTTAGAGAGCAACAGCCCTCAGCTCTTTGCTGGTGCTTATCACACT-CCTTTCTTCACTCCACTCTTAGCTCTGCTTGTTCCTTCTTGTCTGGAA-GATAATAAGAGAATGTGGGCGGGTCGGCCCTTCTGTGTAGTTCCCCTTTCCACATTTCCCCT-CCAAAAAGCCAGCCAAGCACACAACCAAGAAA-CAGTGCAACAAAACACAGACGGCATTCCCACAGCGCGGCGAGTGGCGCCTTCACCTGAGATTACGTGGTTTTCG--GGTCAGGAACAAAATGCTGCTTCGCT-TCATAGTAGAAAGGCAGCAAATTCTTCAAAAAAACC---AAGGTCACAACCTCGACA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178711125 426 + 178775436 CTCTATATCAAAATAAGTGCACTTTCCGCTCCTTTCTTCAGTGACTAGAAAACttccatacttttaa---aataatcaaataataattttagagaGCAACAGCCCTCAGCTCTTTGCTGGTGCTTATCACACT-CCTTTCTTCACTCCACTCTTAGCTCTGCTTGTTCCTTCTTGTCTGGAA-GATAATAAGAGAATGTGGGCGGGTCGGCCCTTCTGTGTAGTTCCCCTTTCCACATTTCCCCT-CCAAAAAGCCAGCCAAGCACACAACCAAGAAA-CAGTGCAACAAAACACAGACGGCATTCCCACAGCGCGGCGAGTGGCACCTTCACCTGAGATTACGTGGTTTTCG--GGTCAGTAACAAAATGCTGCTTCGCT-TCACAGTAGAAAGGCAGCAAATTCTTCaaaaaaaCC---AAGGTCACAACCTCGACA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135645543 429 + 135778131 CTCTATATAAAAATAAGTGCACTTTCCGCTCCTTTCTTCAGTGACTAGAAAACTTCCATACTTTTAA---AATAATCAAATAATAATTTTAGAGAGCAACAGCCCTCAGCTCTTTGCTGGTGCTTATCACACT-CCTTTCTTCACTCCACTCTTAGCTCTGCTCGTTCCTTCTTGTCTGGAA-GATAATAAGAGAATGTGGGCGGGTCGGCCCTTATGTGTAGTTCCCCTTCCCACATTTCCCTT-CCAAAAAGCCAGCCAAGCACACAACCAAGAAA-CAGTGCAACAAAACACAGACGGCATTCCCACAGCGCGGCGAGCGGCACCTTCACCTGAGATTACGTGGCTTTCG--GGTCAGTAACAAAATGCTGCTTGGCT-TCATAGTAGAACGGCAGCAAATTCTTCAAAAAAACCAAGAAGGTCACAACCTCGACA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190755108 431 - 190850796 CTGTATATGAAAATAATTACACATTCCCCTCCTTTCTTCAGTGACTAGAAAACTTCCATACTTTTACaataataataaaataataatttCAGAGAGCAACAGCCCTTAACTCTTTGCTGCTGCCTCTCACACTGCCTTTCTTCACCCCATTCTTAGCTCTGCCAGTCTCTTCTTGTGTATAACGATAAAAAGGGAATGTGGATGGTTTATCACTTTTGGGTAGGTCCCCTTTCCAAATTTTTCTTCCCAAAAAGCTAACCAAATAAACAAACGAAAAA-CAGCGAAACAAAACACAAACAGGGTTCCAACCGTTCGGCAAG-------TTCACCTGAGATTAAGTAGTTTTAGGCAGTTAGTAACAAAATGCTGCTTTGCTGTCACAGTAGAAAGGCAACAAATTCTTCAAAGAAATCAAGAAGGTTGCAATATGGAca
i calJac3.chr3             C 0 I 1471
e mm10.chr8                 87929020 231 - 129401213 I
e canFam3.chr16             18192710   0 -  59632846 C

a score=102382.000000
s hg38.chr4_KI270925v1_alt    533320 50 +    555799 AAGTCTCTCATTACCTTCCTCCTCTTGTGTCTTTTTTCTCCACATTATCT
s panTro4.chr7               2089472 50 - 161824586 AAGTCTCTCATTACCTTCCTCCTCTTATATCTTTTCTCTCCACATTATCT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10706451 50 +  13794794 AAGTCTCTCATTACCTTCCTCCTCTTATGTCTTTTCTCTCCATATTATCT
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chr7b            114000483 50 + 115148730 AAGTCTCTCATTACCTTCCTCCTCTTATGTCTTTTTTCTCCACATTGTCT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183901305 50 + 184069350 AGGTCTCTCATTACCTTCCTCCTCTCATCTCTTTTTTCTCCACATTATCT
i rheMac3.chr5             C 0 I 568
s macFas5.chr5             189294580 45 + 189454096 AGGTCTCTCATTACCTTCCTCCTCTCATCTCTTTTTTCTCCACAT-----
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178711551 45 + 178775436 AGGTCTCTCATTACCTTCCTCCTCTcatctcttttttctccacat-----
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135645972 47 + 135778131 AGGTCTCTC---ACCTTCCTCCTCTCATCTCTTTTTTCTCCACATTATCT
i chlSab2.chr7             C 0 I 346
e mm10.chr8                 87929020 231 - 129401213 I
e canFam3.chr16             18192710  0 -  59632846 C
e calJac3.chr3             190755539 1471 - 190850796 I

a score=22820.000000
s hg38.chr4_KI270925v1_alt    533370 26 +    555799 GTTGCGTATCTACTATAGAAGGCTGC
s panTro4.chr7               2089522 26 - 161824586 GTTGTGTATCTACTATAGAAGGCTGC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10706501 26 +  13794794 GTTGTGTATCTACTATAGAAGGCTGC
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chr7b            114000533 26 + 115148730 GTTGCATATCTACTATAGAAGGCTGC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189294625 20 + 189454096 ------TATCTCCTATAGTCGGCAGC
i macFas5.chr5             C 0 I 9
s papAnu2.chr5             178711596 20 + 178775436 ------tatCTCCTATAGTCGGCagc
i papAnu2.chr5             C 0 I 614
e mm10.chr8                 87929020 231 - 129401213 I
e canFam3.chr16             18192710  0 -  59632846 C
e calJac3.chr3             190755539 1471 - 190850796 I
e chlSab2.chr7             135646019 346 + 135778131 I
e rheMac3.chr5             183901355 568 + 184069350 I

a score=12376.000000
s hg38.chr4_KI270925v1_alt    533396 14 +    555799 AAAACATACAGCAG
s panTro4.chr7               2089548 14 - 161824586 AAAACATACAGCAC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10706527 14 +  13794794 AAAACATACAGCAG
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chr7b            114000559 14 + 115148730 AAAACATACCACAG
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189294654 14 + 189454096 AAAACACACAGCAG
i macFas5.chr5             I 9 I 610
s papAnu2.chr5             178712230 14 + 178775436 aaaaaaaacaaaaa
i papAnu2.chr5             I 614 C 0
e mm10.chr8                 87929020 231 - 129401213 I
e canFam3.chr16             18192710  0 -  59632846 C
e calJac3.chr3             190755539 1471 - 190850796 I
e chlSab2.chr7             135646019 346 + 135778131 I
e rheMac3.chr5             183901355 568 + 184069350 I

a score=10476.000000
s hg38.chr4_KI270925v1_alt    533410 10 +    555799 AAAGGATGGC
s panTro4.chr7               2089562 10 - 161824586 AAAGGATGGC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10706541 10 +  13794794 AAAGGATGGC
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chr7b            114000573 10 + 115148730 AGAGGATGGC
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189295278 10 + 189454096 aaagaaTGGT
i macFas5.chr5             I 610 C 0
s papAnu2.chr5             178712244 10 + 178775436 aaacaatggt
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87929020 231 - 129401213 I
e canFam3.chr16             18192710  0 -  59632846 C
e calJac3.chr3             190755539 1471 - 190850796 I
e chlSab2.chr7             135646019 346 + 135778131 I
e rheMac3.chr5             183901355 568 + 184069350 I

a score=748604.000000
s hg38.chr4_KI270925v1_alt    533420 341 +    555799 TTGAAGGCAATTGATGTTTGTAAAAAAATCCACAACAGGATCCAAGCTGAAGAGGTGAACACGTCAGCCTGGTGGGACAATTCTCAGCATGTGCAAACATAGGTAAATTCTAGCCTATGTTACATTAAAAACAATGTCAGTGCATTTTT-TCATGTTAAAGTTTTTTTCAAAGCTAAAGTGTGTTCCTTGTTGTGCTGACCACAAACGAGTTTTAAGAGTTTTGAAAGTCTGGCAAAAATAG-AAAAAAAAAAAAA-----GCTGTAGTGACATTGAACTGCTCAATGTAAGCATTGGGCATGCACAAATTTTCAAAACAAAGGAAGGAAATCATCCCTCT-TACAACA
s panTro4.chr7               2089572 346 - 161824586 TTGAAGGCAATTGATGTTTGTAAATAAATCCACAACAGGATCCAAGATGAAGAGGTGAACACATCAACCGGGTGGGACAATTCTCAGCATGTGCAAACATAGGCAAATTCTAGCCTATGTTACATTAAAAACAATGTCAGTGCATTTTT--CATGTTAAAGATTTTTTCAAAGCTAAAGCTTTTTCTTTGCTGTGCTGACCACAAACAAATTTTAAGAGTTTCAAAAGTCTGGCaaaaatag-aaaaaaaaaaaaaaaaaaGCTGAAGCAACATTGAACCGCACAATGTAAGCACTGGGCATGCACAAATTTTCAAAACAAAGGAAGGAGATCATCCCTCTCTACATCG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10706551 336 +  13794794 TTGAAGGTAATTGATATTTGTAAATAAATCCACAAGAGGATCCAAGCTGAAGAGGTGAACACATCAGCCGGGTGGGACAATTCTCAGCATGTGCAAACATAGGCAAATTCTAGCCTATGTTACATTAAAAACAATGTCAGTGCATTTTT-TCATGTTAAAGATTTTTTCAAAGCTAAAGCGTGTTCCTTGCTGTGCTGACCACAAACAAGTTTTAAGAGTTTTGAAAGTCTGGCAAAAATAG-AAAAAAA-----------GCTGAAGCAGCATTGAACCGCACAATGTAAGCATTGGGCATGTACAAATTTTCAAAACAAAGGAAGGAAATCATCCCTCTCTACAACG
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chr7b            114000583 346 + 115148730 TTGAAGGCAATTGATGTTTGTAAATAAATCCACAACAGGATCCAAGCTAAAGAGGTGAACACAACAGCCGGGTGGGACAATTCTCAGCATTTGCAAACATAGGTAAATTCTAGCCTATATTACATTAAAAACAATGTCAGTGCATTTTTTTCACGTTAAAGTTTTTTTCAAAACTAAAGTGTGTTCCTTGCTGTGCTGACCACAAAGGAGTTTTAAGAGTTTCGAAAGTCTGGCaaaaatag-aaaaaaaaaaaaaaaa--GCTGTAGCGACATTGAACCACTCAATGTAAGCATTGGGCATGCACAAATTTTCAAAACAAAGGAAGGAAATCATCCCTCTCTACAACG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183901923 340 + 184069350 TTGAAAGCGACTGATGTTTGTAAATAAAT--ACAACAGGATCCAAGCTGAAGAGGTGAACACGTCAGCCTGGTGGGACAGTTCTCAGCATGTGGAAACACAGGTAAAGTCTAGCCTATGTTACATTGAAAACAATGCCAGTGCGTTCTT-CCATGTTAAGGTTTTTTTTAAAGCTAAAGTGTGTTCCTTGCTGTGCTGACCGCAAGCAAGTTTTAAGAGTTTTGAAAGTCTGGCAAAAATAG-AAAAAAAAAAAAA-----ACTGTAGCGGCATTGAACTGCACAATGGAAGCCTTGGGCATGCACAAATTTTCAAAACAAAGGAAGGAAATCAGCCCTCTCTACAACG
i rheMac3.chr5             I 568 C 0
s macFas5.chr5             189295288 341 + 189454096 TTGAAAGCGACTGATGTTTGTAAATAAATCCACAACAGGATCCAAGCTGAAGAGGTGAACACGTCAGCCTGGTGGGACAGTTCTCAGCATGTGGAAACACAGGTAAAGTCTAGCCTATGTTACATTGAAAACAATGCCAGTGCGTTCTT-CCATGTTAAGGTTTTTTTTAAAGCTAAAGTGTGTTCCTTGCTGTGCTGACCGCAAGCAAGTTTTAAGAGTTTTGAAAGTCTGGCAAAAATAG--AAAAAAAAAAAA-----ACTGTAGCGGCATTGAACTGCACAATGGAAGCCTTGGGCATGCACAAATTTTCAAAACAAAGGAAGGAAATCAGCCCTCTCTACAACG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178712254 340 + 178775436 TTGAAAGCGACTGATGTTTGTAAATAAATCCACAACAGGATCCAAGCTGAAGAGGTGAACACGTCAGCCTGGTGGGACAGTTCTCAGCATGTGGAAACACAGGTAAAGTCTAGCCTATGTTACGTTGAAAACAATGCCAGTGCGTTCTT-CCAtgttaaggttttttttaaagctaaagtgTGTTCCTTGCTGTGCTGACCGCAAGCAAGTTTTAAGAGTTTTGAAAGTctggcaaaaatag---aaaaaaaaaaa-----actgtagcgGCATTGAACTGCACAATGGAAGCCGTGGGCATGCACAAGCTTtcaaaacaaaggaaggaaatcagcCCTCTCTACAATG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135646365 339 + 135778131 TTGAAAGCGACTGATGTTTGTAAAGAAATCCACAACAGGATCCAAGCTGAAGCGGTGAACACGTCAGCCTAGTGGGACAGTTCTCAGCATGTGGAAACACAGGTAAAGTCTAGCCTATGTTACATTGAAAACAATGCCAGTGCGTTCTT-CCATGTTAAGACTTTTTTTAAAGCTAAAGTGTGTTCCTTGCTGTGCTGACCACAAGCAAGTTTTAAGAGTTTTGAAAGTCTGACaaaaatagaaaaaaaaaaaaaa-----aGTGTAGCGGCATTGAACTGCACAATGGAAGCCTTGGGCATGCACAAATTTTCAAAAC----GAAGGAAATCAGCCCTCTCTACAACG
i chlSab2.chr7             I 346 C 0
e mm10.chr8                 87929020 231 - 129401213 I
e canFam3.chr16             18192710   0 -  59632846 C
e calJac3.chr3             190755539 1471 - 190850796 I

a score=24362.000000
s hg38.chr4_KI270925v1_alt    533761 9 +    555799 TGGTTAGGC
s panTro4.chr7               2089918 9 - 161824586 TGGTTAGGC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10706887 9 +  13794794 TGATTAGGT
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chr7b            114000929 9 + 115148730 TGGTTAGGC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183902263 9 + 184069350 TGGTTAGGC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189295629 9 + 189454096 TGGTTAGGC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178712594 9 + 178775436 TGGTTAGgc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135646704 9 + 135778131 TGGTTAGGC
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             18192710 7 -  59632846 --TTTAGAC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87929020 231 - 129401213 I
e calJac3.chr3             190755539 1471 - 190850796 I

a score=561955.000000
s hg38.chr4_KI270925v1_alt    533770 221 +    555799 TGATCTTTAAGAAATAAAATGTAAGAAATTAGAAAAGCAAATGTTTGGCACCTACATATCCAATATCTGGCACCGTG----CAGAGTAGAAGAGTGAAAGAAATAACGAAGAACAAAGTGGTTACTTTGCTTCAGGAGTTCATGATCTGTAGTT-----------------------AGAAACCAATATAAACATTGTGAGTATATTTCAAAGAAAGAG-AAAAGCAggccgggcatggtggcttgcac
s panTro4.chr7               2089927 222 - 161824586 TGATTTTTAAGAAATAAAATGTAAGAAATCAGAAAAGAAAATTTTGGGCACCTACATATCCAATATCTGGCACCGTG----CAGAGTAGAAGAGTGAAAGAAATAATGAAGAACAAAGTGGTTACTTTGCTTCAGGAGTTTGTGATCTATAGTT-----------------------AGAAACCAATATAAACATTTTGAGTATATTTCAAAGGAAGAGCAAAAGCAggccgggtgttgtggcttgcac
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10706896 222 +  13794794 TGATTTTTAAGGAATAAAATGCAAGAAATCAGAAAATCAAATGTCTGGCACCTACATATCCAATATCTGGCACCCTG----CAGAGTAGAAGAGTGAAAGAAATAATGAAGAACAAAGTGTTTACTTTGTTTCAGGAGTTCATGATCTATAGTT-----------------------AGAAACCAATATAAACATTTTGAGTATATTTCAAAGAAAGAGCAAAAGCAggccgggtgttatggcttgcac
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chr7b            114000938 222 + 115148730 TGATCTTtaagaaataaaatgtaagaaatcagaaaaacaaatGTTTGGCACCTGCATATCCAATATCTGGCACTGTG----CAGAGTAGAAGAGTGAAAGAAATAACGAAGAACAAAGTGGTTACTTTGCTTCAGGAGTTCATGATCTATAGTT-----------------------AGAAACCAATATAAACATTTTGAGTATATTTCAAAGAAAGAGCAAAAGCAggccgggagtggtggcttgcac
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183902272 222 + 184069350 TGATTTTTAAGAAATAAAATGTAAGAAATCAGAAAAGCAAATATTTGGCACCTATGTGTCCAATATCTTGCAATGTG----CAGAGTAGAAGAGTGAAAGAAATAATGAAGAACAAAGTGGTTACTTCGCTTCAGAAGTTTACTATCTATAGTT-----------------------AGAAACCAATATAAATATTTTGAGTATGTTTCAAAGAAAAAGCAAAAGCAggccgggtgtgttggcttgtac
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189295638 222 + 189454096 TGATTTTtaagaaataaaatgtaagaaatcagaaaagcaaataTTTGGCACCTATGTGTCCAATATCTGGCAATGTG----CAGAGTAGAAGAGTGAAAGAAATAATGAAGAACAAAGTGGTTACTTCGCTTCAGAAGTTTACTATCTATAGTT-----------------------AGAAACCAATATAAATATTTTGAGTATGTTTCaaagaaaaagcaaaagcaggccgggtgtgttggcttgtac
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178712603 245 + 178775436 tgatttttaagaaataaaatgtaagaaatcagaaaagcaaatatttggCACCTACGTGTCCAATATCTGGCAATGTG----CAGAGTAGAAGagtgaaagaaataatgaagaacaAAGTGGTTACTTTGCTTCAGGAGTTTACTATCTATAGTTAGAAaccaatataaatattttaaagaaaccaatataaatattttgagtaTGTTTCAAAGACAGAGCAAAGGCAGGCCGGGTGTGTTGGCTTGTAC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135646713 245 + 135778131 TGATTTTTAAGAAATAAAATGTAAGAAATCCAAAAAGCAAATATTTGGCACCTACGTGTCCAATATCTGGCACTGTG----CAGAGTAGAAGAGTGAAAGAAATAATGAAGAACAAAGTGGTTACTTTGCTTCAGGAGTTTACTATCTATAGTTAGAAACCAATATAAATATTTTAAAGAAACCAATATAAATATTTTGAGTATGTTTCAAAGACAGAGCAAAAGCAggccgggtgtggtggcttgtac
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87929251 195 - 129401213 TGATTCTTAAGAAATGAAATGTGAGATA-CAAAAAAGCAGAAACTTACTGTCTTTTCGTCCCATGCATAGTTCTATG----CAGAGTTACAGA---AATGAGAAGGTGAAATA--------TTTCTT---------AGTTTATGATCTAATGTC-----------------------AAAAGCAAGTATAACACATCTGAATATTCTACAGcaacagctctcaa-ccttcctaatgctgcaac-----c
i mm10.chr8                I 231 C 0
s canFam3.chr16             18192717 178 -  59632846 TGATTTCTGAAAAATGAAAGGTAAGAAATCAGAAAAGGAAATACTTGGCACTTGCATATTCAATATGGAGCATGTTGCAAACAGAGTAGAATAGTTACAGAACT-ATGAAGGGGAAAATGGTTCCTTTGCCTCAGTACTTTAAAAACTAGAGTA-----------------------AGAAACTAATGTAAAGATTTTGCCC-----------------------------------------------
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190755539 1471 - 190850796 I

a score=16237.000000
s hg38.chr4_KI270925v1_alt    533991 8 +    555799 ctgtagta
s panTro4.chr7               2090149 8 - 161824586 ctgtagta
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10707118 8 +  13794794 gtgtagta
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chr7b            114001160 8 + 115148730 ctgtagta
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183902494 8 + 184069350 ctgttata
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189295860 8 + 189454096 ctgttata
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178712848 8 + 178775436 CTGTCATa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135646958 8 + 135778131 ctgtcata
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87929446 8 - 129401213 ctctagta
i mm10.chr8                C 0 I 163
e canFam3.chr16             18192895 0 -  59632846 C
e calJac3.chr3             190755539 1471 - 190850796 I

a score=217046.000000
s hg38.chr4_KI270925v1_alt    533999 104 +    555799 ataacgctttgggaggccaaggtgggaaaattgcttgagctcatgagtttgataccagcctgagaaatatagtaaaacctcatctctat--aaaaaaaa--TTAATTA
s panTro4.chr7               2090157 103 - 161824586 ataacactttgggaggctgaagtgggaagattgcttgagctcatgggtttgataccagcctgagaaatatagtaaaacctcatctctat--gaaaaaA---TTAATTT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10707126 102 +  13794794 ataacattttgggaggtcgaggtgggaagattgcttgagcttatgagtttgataccagcctgagaaatatagtaaaacctcacctctat--aaaaaat---TTAATT-
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chr7b            114001168 105 + 115148730 ataatgctttgggaggccgaggtgggaagattgcttgagctcatgagtttgataccagcctgagaaatatagtaaaacctcatctctat--aaaaaaaaaGTTAATT-
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183902502  99 + 184069350 ataacattttgggaggccgaggtgggaaggttgcttgagctcatgagtttgatatcggcctgagaaatatagtaaaacctcatctctat--aaaaaaaa-------tt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189295868  99 + 189454096 ataacattttgggaggccgaggtgggaaggttgcttgagctcatgagtttgatatcagcctgagaaatatagtaaaacctcatctctat--aaaaaaaa-------tt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178712856 101 + 178775436 ataacattttgggaggccgaggtgggaaggttgcttgagctcatgagtttgatatcagcctgagaaatataataaaacctcatctctataaaaaaaaaa-------tt
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135646966 108 + 135778131 ataacattttgggaggccgaagtgggaaggttgcttgagctcatgagtttgataccagcctgagaaatatagtaaaacctcatctctattaaaaaaaaaaaTTAATTT
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87929454 163 - 129401213 I
e canFam3.chr16             18192895   0 -  59632846 C
e calJac3.chr3             190755539 1471 - 190850796 I

a score=59750.000000
s hg38.chr4_KI270925v1_alt    534103 21 +    555799 AAAAAAAGGCAGAGCAAAAAC
s panTro4.chr7               2090260 21 - 161824586 AAAAAAAGGCAGAGCAAAAAC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10707228 21 +  13794794 AAAAAAAGGCAGAGCAAAAAC
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chr7b            114001273 21 + 115148730 TAAAAAAGGCAGAGCAAAAAC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183902601 21 + 184069350 aaaaaGAGGCAGAGCAAAAAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189295967 21 + 189454096 aaaaagaggcagagcaaaaac
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178712957 21 + 178775436 aaaaagaggcagagcaaaaac
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135647074 21 + 135778131 AAAAAGAGGCAGAGCAAAAAC
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             18192895 17 -  59632846 AAAAAAAGG----GCAAAAAC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87929454 163 - 129401213 I
e calJac3.chr3             190755539 1471 - 190850796 I

a score=598109.000000
s hg38.chr4_KI270925v1_alt    534124 208 +    555799 AAATATGAAAGAAAACATTAGAAATCAGAGCTTGGGCAAAGAGTTAAATGTGAGCAAAGCATCTCTGCCTTGGGGGGCCTCTGGAGCATCCCGGCTTCCTGTAGAGGCCCCACCACATGGCCCTTTCCCATCA-CTGGGAACTGTCTTCTGTATCGTGCCAGGATTTTCCCCCAAACTTCTCAACCTAatttattcagccaaaacatat
s panTro4.chr7               2090281 208 - 161824586 AAATATGAAAGAAAACATTAGAAATCAGAGCTTGGGCAAAGAGTTCAACATGAGCAAAGCAGCTCTGCCCTGGGGGTCCTCTGGAGCATCCCGGCTTCCTGTAGAGGCCCCACCACATGGCTCTATCCCATCA-CTGGGAACTGTCTTCTGTATCATCCCAGAATTTTCGCCCAAACTTCTCAACCTAatttattcagccaaaacatat
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10707249 207 +  13794794 AAATATGAAAGAAAACATTAGAAATCAGAACTTGGGCAAAGAGTTCTGCGTGAGCAAAGCAGCTCTGCCATGGGGGACCTCTGGAGCATCCCGTTTTCCTGTGGAGGCCCCACCACATGGCCCTTTCCAATCA-CTGGGAACCGTCTTCTGTATCATGCCAGGA-TTTCCCCCAACCTTAGCAACATAatttattcagccaaaacatat
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chr7b            114001294 208 + 115148730 AAATATGAAAGAAAACATTAGAAATCAGAGCTTGGGCAAAGAGTTCAATGTGAGCAAAGCAGCTCCACCCTGGGGGGCCTCTGGAGCATCCCGGCTTCCTGTAGACGCCCCACCACATGGCCCTTTCCCGTCA-CTGGGAATCGTCTTCTGTATCATGCCAGGATTTTTCCCCAAACTTCTCAACCTAatttattcagccaaaacatat
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183902622 208 + 184069350 AAATATGAAAGAAAACATTAGAAATCAGAGCTTGGGCAAAGAGTTCAATGTGAGCAAAGCAGCTCTGCCTTGGGGGACCTCTGGAGCATCCCAGCTTCCTGTAGAGGTCCCACCACATGGCCCTTTCCCGTCA-CTGGGAACCGTCTTCTGTATCATGCCAGGATTTTCCCCCAAAATTCTCAACCTAatttattcagccaaaacgtat
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189295988 208 + 189454096 aaaTATGAAAGAAAACATTAGAAATCAGAGCTTGGGCAAAGAGTTCAATGTGAGCAAAGCAGCTCTGCCTTGGGGGACCTCTGGAGCATCCCGGCTTCCTGTAGAGGTCCCACCACATGGCCCTTTCCCGTCA-CTGTGAACCGTCTTCTGTATCATGCCAGGATTTTCCCCCAAAATTCTCAACCTAatttattcagccaaaacgtat
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178712978 208 + 178775436 aaatatgaaagaaaacattagaaataagAGCTTGGGCAAAGAGTTCAATGTGAGCAAAGCAGCTCTGCCTTGGGGGACCTCTGGAGCATCCCGGCTTCCTGTAGAGGTCCCACCACATGGCCCTTTCCCGTCA-CTGGGAACCGTCTTCTGTATCATGCCAGgattttcccccaaaattctcAACCTAATTTATTCAGCCAAAACGTAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135647095 208 + 135778131 AAATATGAAAGAAAACATTAGAAATCAGAGCTTGGGCAAAGAGTTCAATGTGAGCAAAGCAGCTCTGCCTTGGGGGACCTCTGGAGCATCCTGGCTTCCTGTAGAGGTCCCACCACATGGCCCTTTCCCGTCA-CTGGGAATCGTCTTCTACATCATGCCAGGATTTTCCCCCAAAATTCTCAACCTAatttattcagccaaaacatat
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87929617 182 - 129401213 AAATATAGGAGGAAGTACCAGAAATATGGGCATAAACAGACTTGTCAATGAGAACAAAGTAGCACTGCCTTGGATGGCT-----AGC---------CCCTCTAAATGT-CTGTCATGTGTTTCTTTCTCATCATCTGAGAA---TGTTCTATGTCATGTTAGCCTCCTTCCCCAGA---------CTGATTGGCTGAATCAAAACATAT
i mm10.chr8                I 163 I 7975
s canFam3.chr16             18192912 206 -  59632846 AAACATGAGGGAAAAGATCAGAAACCAGAACTTGGACAAGAATTTCGGTGTAGACAAAGCGGTTCCACTGTGAGAGATCTCTGGAGCTATTCAGCATCCAATACAGGCTCTGCTACATGACCTTTCCCCCTCA-CTGGAGA--ACCTTCCATGTCATGTGAGTTTCTTTTCCCAAACTCTTCCACTTACTTCATTCAAACAATATATAG
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190755539 1471 - 190850796 I

a score=506334.000000
s hg38.chr4_KI270925v1_alt    534332 207 +    555799 --------ata---------------tttcttgaa---------------------------------------------------------------------tccttgctaagagc------------------------------------------------aaggca----------------------------------ctgttctacataatgaaaatatggcaatgatat-------------------------aaaacaaaaatatttaccctcaggcaaattacattccagtgagaaaagacagatcattaataaaataaatatgtaaaatatagaatatgccagaagg-taataagtggtacagagaaaaattaagcatggaagggagctcagg-------------------------------------------------------
s panTro4.chr7               2090489 207 - 161824586 --------ata---------------tttcttgaa---------------------------------------------------------------------tccttactaagagc------------------------------------------------aaggca----------------------------------ctgttcaacataatgaaaatatgtcaatgatat-------------------------gaaacaaaaatgtttaccctcatgcaaattacattccagtgagaaaagacagatcattaataaaataaatatgtaaaatatataatatgccagaagg-taataagtggcacagagaaaaattaagtgtggaagggagctcagg-------------------------------------------------------
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10707456 207 +  13794794 --------ata---------------tttcttgaa---------------------------------------------------------------------tccttactaatagc------------------------------------------------aaggca----------------------------------ctgttcaacataatgaaaatatggcaatgatat-------------------------aaaacaaaaatgtttaccctcatgtaaattacattccagtgagaaaagacagatcattaataaaataaatatgtaaaatatataatatgccagaagg-taataaatggcacagagaaaaattaagcgtggaagggagctcagg-------------------------------------------------------
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chr7b            114001502 207 + 115148730 --------ata---------------tttcttgaa---------------------------------------------------------------------tccttactaagagc------------------------------------------------aaggca----------------------------------ctgttctacataataaaaatatggctatgatat-------------------------aaaacaaaaatatttaccctcatgcaaattacattccagtgagaaaagacagatcattaataaaatgaatatgtaaaatatataatatgccagaagg-taataagtggcacagagaaaaattaagcgtggaagggagctcagg-------------------------------------------------------
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183902830 207 + 184069350 --------ata---------------ttttttgaa---------------------------------------------------------------------tccttactaacagc------------------------------------------------aaggca----------------------------------ctgttctacataatgaaaatacggcaatgatat-------------------------aaaacaaaaatatttatcctcatgcaaataacattccggtgagaaaagacagatcattagtaaaatgaatatgtaaaatgtataatatgccagaagg-taataagcggcacagagaaaaattaagcatggaagggagccaagc-------------------------------------------------------
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189296196 207 + 189454096 --------ata---------------ttttttgaa---------------------------------------------------------------------tccttactaacagc------------------------------------------------aaggca----------------------------------ctgttctacataatgaaaatacggcaatgatat-------------------------aaaacaaaaatatttatcctcatgcaaataacattccggtgagaaaagacagatcattagtaaaatgaatatgtaaaatgtataatatgccagaagg-taataagcggcacagagaaaaattaagcatggaagggagccaagc-------------------------------------------------------
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178713186 207 + 178775436 --------ATG---------------TTTTTTGAA---------------------------------------------------------------------TCCTTACTAACAGC------------------------------------------------AAGGCA----------------------------------CTGTTCTACATAATGAAAATACGGCaatgatat-------------------------aaaacaaaaatatttatcctCATGCAAATAACATTCCAATGAGAAAAGACAGATCATTAgtaaaatgaatatgtaaaatgtataatatgcCAGAAGG-TAATAAGCGGCACAGAGAAAAATTAAGCATGGAAGGGAGCCAAGC-------------------------------------------------------
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135647303 207 + 135778131 --------ata---------------ttttttgaa---------------------------------------------------------------------tccttactaacagc------------------------------------------------aaggca----------------------------------ctgttctacataatgaaaatagggcaatgatat-------------------------aaaacaaaaatatttattctcatgcaaataacattccagtgagaaaagacagatcattagtaaaatgaatatgtaaaatgtataatatgccagaagg-taataagcggcacagagaaaaattaagcatggaagggagccaagc-------------------------------------------------------
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             18193118 462 -  59632846 AATGCTTAATAGAAGCCAGTTGCTAGttttttaaaagattttatttatttattcaagagaaacacagagagagaggcaaagatataggcgggggagaggcaggctccctgtgtagaacctgatgcggggacttaaccccaagacctcaggatcacctcctgagtcaaaggcagatgatgctcaacccaggtgccccAAgccagttgctgttttaagcaatgaaaatgcagcaatgatataaaacaaaatatttttaaaatatagaaaacaaaaatatttaccttcatttagattacattctaatgggtggagacagaccatcaataaaataaatatgtcaaatatataatattctagaaggttgataaggggtacagagaaaaattaagacaggaaaggggataagaaatacttggggatccctgggtggcgcagcggtttggtgcctgcctttggcccagg
i canFam3.chr16            C 0 I 146
e mm10.chr8                 87929799 7975 - 129401213 I
e calJac3.chr3             190755539 1471 - 190850796 I

a score=1835056.000000
s hg38.chr4_KI270925v1_alt    534539 709 +    555799  
s panTro4.chr7               2090696 707 - 161824586  
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10707663 707 +  13794794  
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chr7b            114001709 711 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183903037 710 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189296403 710 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178713393 710 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135647510 709 + 135778131  
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             18193726 745 -  59632846  
i canFam3.chr16            I 146 C 0
e mm10.chr8                 87929799 7975 - 129401213 I
e calJac3.chr3             190755539 1471 - 190850796 I

a score=1077156.000000
s hg38.chr4_KI270925v1_alt    535248 370 +    555799 AGAAATTCTGAATGTTTACAAGACGAATAAAagtggtatgctagtaaacttatt-ggttgggt----ggggagaagcccagatttgtagcatttgctgatttccattgtgtaaatatttctactg--------------------atggTTTGACAAACACTTCATAAAATTCCTGGGTACTTAATTATCAGCTCCAGTAGAGCACTGCATGTATGACATCCCATTTGCCAATTCCACACTAGATTCTGTTGGGGACAAGCTGTATGAGAGTCAACTAGCAACAGAA---A--------TAAGGAAGTCCTCAAT-AAAAATCAG--------CATTTACTTTTGACAGATGTGAGATTCTGGAATGT-ATTTCTCTTTACTTGCTCTGCCTGGTGATTAAATTATGATTTTAAAA
s panTro4.chr7               2091403 370 - 161824586 AGAAATTCTGAACCTTTACAAGATGAATAAAAGTTGTATGCTAGTAAACCTATT-GTTTGGGT----GGGGAGCagcccagattagtagcatttgctgatttccattgtgtaaatatttctactg--------------------atggTTTGACAAACACTTCATAAAATTTCTGGGTACTTAATTATCAGATTCAGTAGAGCACTGCATGTATGACACCCCATTTGCCAATTCCACTCTAGATTCTATTGGGAACAAGCTGTATGAGAGTCAACTGGTGGCAGAA---A--------TAAGGAAGTCCTCAAT-AAAAATCAG--------CATTTACTTTTGACAGATGTGAGATTCTGGAACTT-ATTTCTCTTTACTTGCTCTGCCTGGTGATTAAATTATGATTTTAAAA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10708370 370 +  13794794 ATAAATTCTGAACATTTACAAGATGAATAAAAGTTTTATGCTAGTAAACCTATG-GGTTGGGT----GGGGagaagcccagatttgtagcatttgctgatttccattgtgtaaatgtttctactg--------------------atggTTTGACAAACACTTCATAAAATTTCTGGGTACTTAATTATCAGCTCCAGTAGAGCACTGCATGTATGGCACCCCATTTGCCAATTCCACATTTGATTCTATTGGGAACAAGCTGTATGAGAGACAACTGGTGGCAGAA---A--------TAAGGAAGTCCTCAAT-AAAAATCAG--------CATTTACTTTTGACAGATGTGAGATTCTGGAACTT-ATTTCTCTTTACTTGCTCTACCTGGTGATTAAATTATGATTTTAAAA
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chr7b            114002420 370 + 115148730 AGAAATTCTGAATGTTTACAAGATGAATAAAagtggtatgctagtaaacctatt-ggttgggg----gggcagaagcccagatttgtagcatttgctgatttccattgtgtaaatatttctactg--------------------atggTTTGACAAACACTTCATAAAATTCCTGGGTACTTAATTATCAGCTCCAGTAGAGCGCTGCATGTATGACACCCCATTTGCCAATTCCACACTGGATTCTATTGGGGACAAGCTGTATGAGAGTCAACTAGTGGCAGAA---A--------TAAGGAAGTCCTCAAT-AAAAATCAG--------CATTTACTTCTGACAGATGTGAGATTCTAGTACTT-ATTTCTCTTTACTTGCTCTGCCTGGTGATTAAATTATGATTTTAAAC
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183903747 370 + 184069350 AGAAATTTTGAATGTTTACAAGACGAATAAAagtggtatgctagtaaacctatt-ggttgggt---gggggggaagcccagatttgtagaatttgctgatttccattgtgtaaatatttctactg--------------------atggTTTGACAAACACTTCACAAAATTCCTGGGTAC-TAATTATCGGCTCCAGTAGAGCACTGCATGTATGACACCTCATTTGCCAATTCCACACTAGATTCTACTGGGGACAAGCAGTTTGAGAGTCAACTAGTGGCAGAA---A--------TAAGGAAGTCTTCAAT-AAAAATCAG--------CATTTACTTTTGACAGATGTGAGATTCTGGAACTT-ATTTCTCTTTATCTGCTCTGCCTGGTGATTAAATTATGATTTTAAAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189297113 370 + 189454096 AGAAATTTTGAATGTTTACAAGACGAATAAAagtggtatgctagtaaacctatt-ggttgggt---gggggggaagcccagatttgtagaatttgctgatttccattgtgtaaatatttctactg--------------------atggTTTGACAAACACTTCACAAAATTCCTGGGTAC-TAATTATCGGCTCCAGTAGAGCACTGCATGTATGACACCTCATTTGCCAATTCCACACTAGATTCTACTGGGGACAAGCAGTTTGAGAGTCAACTAGTGGCAGAA---A--------TAAGGAAGTCTTCAAT-AAAAATCAG--------CATTTACTTTTGACAGATGTGAGATTCTGGAACTT-ATTTCTCTTTATCTGCTCTGCCTGGTGATTAAATTATGATTTTAAAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178714103 372 + 178775436 agaaagTTTGAATGTTTACAAGACGAATAAAAGTGGTATGCTAGTAAACATATTGGGTTGGGT---gggggggAAGCCCAGATTTGTAGAATTTGCTGATttccattgtgtaaatatttCTACTG--------------------ATGGTTTGACAAACACTTCACAAAATTCCTGGGTAC-TAATTATCGGCTCCAGTAGAGCGCTGCATGTATGACACctcatttgccaattccacactaGATTCTACTGGGGACAAGCAGTTTGAGAGTCAACTAGTGGCAGAA---A--------TAAGGAAGTCCTCAATAAAAAATCAG--------CATTTACTTTTGACAGATGTGAGATTCTGGAACTT-ATTTCTCTTTATCTGCTCTGCCTGGTGattaaattatgattttaaaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135648219 371 + 135778131 AGAAATTTTGAATGTTTACAAGATGAATAAAagtggtatgctagtaaacctatt-ggttgggt--ggggggggaagcccagatttatagaatttgctgatttctgttgtgtaaatatttctactg--------------------atggTTTGACAAACACTTCACAAAATTCCTGGGTAC-TAATTATCAGCTCCAGTAGAGCGCTGCATGTATGACACCTCATTTGCCAATTCCACACTAGATTCTACTGGGGACAAGCAGTTTGAGAGTCAACTAGTGGCAGAA---A--------TAAGGAAGTCCTCAAT-AAAAATCAG--------CATTTACTTTTGACAGATGTGAGATTCTGGAACTT-ATTTCTCTTTATCTGCTCTGCCTGGTAATTAAATTATGATTTTAAAA
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87937774 395 - 129401213 AAGACTTCTAAATGTTTATGAGAAGAACAGCC-CGATGAATTAATAAGCCGCCT-GTCTAGATAAAGAGAAAAaagccttggattttagtatttgttgaattctatcacataaacatccccattatagttaattttaggttatccagagattgacaggttcttcacaaaattcgtgaattttgaagtgctgcctgcaacagAGCG---------TGAGCTCCCATTGGCCAGTTCCATGCTGTCTCCCATCTGGGCTGAGCAGGTTGGAAGTTGAGTGCTAACAAAA---ATGTATTTTTAAG-----CTTCACT-GAAAATCAGTGAGGAGATATTTATGTCTGACAGATGTGAGATTCCAGAATTC-TTTTCTCTTTGCCTGCCGTGCTTGGTGACTAAGTGGAGGTTTGAAAA
i mm10.chr8                I 7975 I 1738
s canFam3.chr16             18194471 397 -  59632846 AGGAATTCTGAATGCGTACAAGAAGAATAAATGTGATATGCTGGTAAACCAATG-G---GGGC----AAGAGGGTGTGTGgatttgtagcatttgctgatttctctgaagtaaatactctcactatgcttgatttcaagctaccaaTAGTTTAACAACCAACTCATAAAACTCCTAAATATTTAATTATCAGATACAGTAGGACATTATTCATCTGAC--TCCATTTGACAATTCCACACTATATTCCATTGGGGCCAAACAATTCAGGAGTCAACCAGTGGCAAAATGTA--------TAAGAAAGGACTCAAT-AAAAATCAGTGAGAAGATACCTGAGTTTGACAGATGCCAGATTTTAAAATCTAATTTTTCCTTATCTGCTCTGCCTGGTGATTAAATGATGTTTTAAAAA
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190755539 1471 - 190850796 I

a score=314299.000000
s hg38.chr4_KI270925v1_alt    535618 125 +    555799 GAAATAGTTTTAATTCCTTATCAGAATGCTGCCACCAAATAAATAAAATACGTACTTTAACTATATGCAATCTTGTCTATATTATACTGTTGTCAACGGAAACATTATCAGGGGCCAGCTTCATG
s panTro4.chr7               2091773 125 - 161824586 GAAATAGCTTTAATTTCTTATCAGAATGCTGCCACCAAATAAATAAAATACGTACTTTAACTATATGCAATCCTGTCTATATTATACTGTTGTCAACAGAAACATTATCAAGAGCCAACTTCATG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10708740 123 +  13794794 GAA--AATTTTAATTTCTTATCAGAATGCTGCCACCAAATAAATAAAATACGTACTTTACCTATGTGCAATCTTGTCTATATTATACTGTTGTCAACAGAAACATTATTAGGGGCCAACTTCATG
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chr7b            114002790 120 + 115148730 -----AGTTTTAATTCCTTATCAGAATGCTGCCACCAAATAAATAAAATATGTACTTTAACTATATGCAATCTTGTCTATATTATACTGTTGTCAACAGAAACATTATCAGGGGCCAGCTTCATG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183904117 125 + 184069350 GAAATGGTTTTAATTCCTTATCAGAATGCTGCCACCAAATAAATAAAATACATATTTTAACTGTATGCAATGTTCTCTGTATTATACTGTTGTCAACAAAAACATTATCAGGGGCCACCTCCATG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189297483 125 + 189454096 GAAATGGTTTTAATTCCTTATCAGAATGCTGCCACCAAATAAATAAAATACATATTTTAACTGTATGCAATGTTCTCTGTATTATACTGTTGTCAACAAAAACATTATCAGGGGCCACCTCCATG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178714475 125 + 178775436 caaatggtTTTAATTCCTTATCAGAATGCTGccgccaaataaataaaatacatattttaactgTACGCAATCTTCTCTGTATTATACTGTTGTCAACAAAAACATTATCAGGGGCCACCTTCACG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135648590 125 + 135778131 GAAATGGTTTTAATTCCCTATCAGAATGCTGCCACCAAATAAATAAAATACATATTTTAACTGTATGCAATCTTGTCTGCATTATACTGTGGTCAACAAAAACATTATCAGGGGCCACCTCCACG
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             18194868 119 -  59632846 GAAGCACTTCTACTCCTGCATCAGAATGTTGCCACCAAAAAGAAGACAAAC------TAACTATATTCAGTCTTGTCTATCTTTCATTATGTTCAGCAGAAACATTATCAAAAACAAGTTTCATG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87938169 1738 - 129401213 I
e calJac3.chr3             190755539 1471 - 190850796 I

a score=79704.000000
s hg38.chr4_KI270925v1_alt    535743 28 +    555799 AAAGGAGATATGTGATAGAAGCTGGAGT
s panTro4.chr7               2091898 28 - 161824586 AAAGGAGATATGTGATAGAAGATGGAGT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10708863 28 +  13794794 AAAGGAGATACGTGATAGAAGATGGAGT
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chr7b            114002910 28 + 115148730 AAAGGAGATATGTGATAGAAGCTAGAGT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183904242 28 + 184069350 AAAGGAGATATGTGATAGAAGCTGGAGT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189297608 28 + 189454096 AAAGGAGATATGTGATAGAAGCTGGAGT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178714600 28 + 178775436 AAAGGAGATATGTGATAGAAGCTGGAGT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135648715 28 + 135778131 AAAGGAGATATATGATAGAAGCTGGAAT
i chlSab2.chr7             C 0 I 27
s mm10.chr8                 87939907 26 - 129401213 AATGGGAATGTGTGATAGAAGTTGGA--
i mm10.chr8                I 1738 C 0
s canFam3.chr16             18194987 19 -  59632846 AAAGGAGATATTGAGtaaa---------
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190755539 1471 - 190850796 I

a score=17932.000000
s hg38.chr4_KI270925v1_alt    535771 10 +    555799 TGTTGGAGTG
s panTro4.chr7               2091926 10 - 161824586 TGTTGGAATG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10708891 10 +  13794794 TGTTGGAATG
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chr7b            114002938 10 + 115148730 TGTTGGAATG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183904270 10 + 184069350 TGTTGGAATG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189297636 10 + 189454096 TGTTGGAATG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178714628 10 + 178775436 TGTTGGaatg
i papAnu2.chr5             C 0 C 0
s mm10.chr8                 87939933  9 - 129401213 TACTGGGTT-
i mm10.chr8                C 0 C 0
e canFam3.chr16             18195006  0 -  59632846 C
e calJac3.chr3             190755539 1471 - 190850796 I
e chlSab2.chr7             135648743 27 + 135778131 I

a score=324726.000000
s hg38.chr4_KI270925v1_alt    535781 120 +    555799 AAAAAAAAAGTCAAATTTTACTTTGGATTAATCAGAGGG------AAGAAAGCAGACAGATAGGAAAGGAAAGGCAGGCTTAGCCAAGTTGAAGAAAGAGGCTGAACTCAGGAGGCAGTGGGAGAA
s panTro4.chr7               2091936 119 - 161824586 AAAAAAAG-GTCAAATTTTACTTTGGATTAATCAGAGGT------AAGAAAGCAGACAGATAGGAAAGGAAAGACAGGCTTAGCCAAGTTGAAGAAAGAGGCTGAACTCAGGAGGCAGTAGGAGAA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10708901 119 +  13794794 AAAAAAAA-GTCAAATTTTACTTTGGATTAATCAGAGGG------AAGAAAGCAGACAGATAGGAAAGGAAAGGCAGGCTCAGCCAAGTTGAAGAAAGAGGCTGAACTCAGGAGGCAGTGGGAGAA
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chr7b            114002948 120 + 115148730 AAAAAAAAAGTCAATTTTTTCTTTGGATTAATCAGAGGG------AAGAAAGTAGACAGACAGGAAAGGAGAGGCAGGCTTAGCCAAGTTGAGGAAAGAGGCTGAACTCAGGAGGCAGTGGGAGAA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183904280 118 + 184069350 --AAAAAAAGTCAAATTTTACTTTGGATTAATCAGAGGG------AAGAAAGTGGATGGATAGGAAAGGAGAAGCAGGCTTAGCCAAGTTGAAGAAAGAGGCTGAACTCAGGAGGCAGTGGGAGAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189297646 118 + 189454096 --AAAAAAAGTCAAATTTTACTTTGGATTAATCAGAGGG------AAGAAAGTGGATGGATAGGAAAGGAGAAGCAGGCTTAGCCAAGTTGAAGAAAGAGGCTGAACTCAGGAGGCAGTGGGAGAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178714638 118 + 178775436 --aaaaaaagtcaaattttacTTTAGATTAATCAGAGGG------AAGAAAGCGGATGGATAGGAAAGGAGAAGCAGGCTTAGCCAAGTTGAAGAAAGAggctgaactcaggaggcagtggGAGAA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135648770 120 + 135778131 ATAAAAAAAGTCAAATTTTACTTTGGATTAATCAGAGGG------AAGAAAGCAGATGGATAGGAAAGAAGAAGCAGGCTTAGCCAAGTGGAAGAAAGAGGCTGAACTCAGGAGGCAGTGGGAGAA
i chlSab2.chr7             I 27 C 0
s mm10.chr8                 87939942  89 - 129401213 ----AAAAAGT--AATTATATTTTAGACCAAT------------------------------GGAAAAGA-AAGCAGCTTTGGCCAAGCCAAAGCAAATGCATCAATTATGGAGGCACTGTGGGAA
i mm10.chr8                C 0 I 177
s canFam3.chr16             18195006 123 -  59632846 aaaaaaaaaattgtaatatatattGGATCAATCATAGGGGAAAAAAAAAAAGTAGATGGGTAGAAAAGA--AGGCAGGCTTGGCCAAACCAATG-AGGAAGCTATACCTAGGAGGCCCCAGAGAAA
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190755539 1471 - 190850796 I

a score=13604.000000
s hg38.chr4_KI270925v1_alt    535901 5 +    555799 TAGGA
s panTro4.chr7               2092055 5 - 161824586 TAGGA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10709020 5 +  13794794 TAGGA
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chr7b            114003068 5 + 115148730 TATGA
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183904398 5 + 184069350 TAGGA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189297764 5 + 189454096 TAGGA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178714756 5 + 178775436 TAGGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135648890 5 + 135778131 TAGGA
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             18195129 5 -  59632846 AAGGA
i canFam3.chr16            C 0 I 98
e mm10.chr8                 87940031 177 - 129401213 I
e calJac3.chr3             190755539 1471 - 190850796 I

a score=2139194.000000
s hg38.chr4_KI270925v1_alt    535906 971 +    555799  
s panTro4.chr7               2092060 964 - 161824586  
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10709025 984 +  13794794  
i ponAbe2.chr9_random      C 0 I 497
s nomLeu3.chr7b            114003073 990 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183904403 953 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189297769 953 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178714761 950 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135648895 941 + 135778131  
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87940031 177 - 129401213 I
e canFam3.chr16             18195134  98 -  59632846 I
e calJac3.chr3             190755539 1471 - 190850796 I

a score=633979.000000
s hg38.chr4_KI270925v1_alt    536877 352 +    555799 gtgctgagtgtctgtggcttttccaggca-tacggtgcaagctgtcagtggatcaaccattctggagtctggaggatggtggccgtcttctctcagctccactaggcagtgccccagtggggatggtgtgggggc-------ccacatttcccttctgcacacattgccctagcagaggttccccatgagggctctgtccccgtcacaaatttgtgcctgaacacccaggcatttccatgcatcctctgaaatttaggcgtagattctcaaacctcaattcttgacttctgtgcacccacaggcccaacacctcgtgtaagctgccaaggcttggggcttgtaccctctgaagccatggc
s panTro4.chr7               2093024 360 - 161824586 gtgctgagtgtctgtggcttttccaggcaatacggtgcaagctgtcagtgtatctaccattctagtgtctggaggatggtggccctcttctctcagctccagtaggcagtgccccagtggggattgtgtgggggctctgaccccacatttcccttctgcactcactgccctagcagaggtccaccatgagggctccatccccgtcacaaatttgtgcctgaacacccaggcgtttccacgcatcctctgaaatttaggcgtagattcccaaacctcaattcttgacttctgcgtacccacaggcccaacacctcatgtaagctgccaaggcttggggcttgtaccctctgaagccatggc
i panTro4.chr7             C 0 C 0
s nomLeu3.chr7b            114004063 358 + 115148730 gtgctgagtgtctgtggcttttccaggca-tatggtggaagctgtcagtggatctaccattctggagtctggaggatggtggccctcttctctcagctccactaggcagtgcccccgtggggaatgtgtgggggctctgaccccacatttcccttctgcactcactgccctagcagtggttccccatgggggctctgt-cctgtcacaaatttgtgcctgaacgcccaggcatttccatgcatcctctgaaatttaggcatagattcccaaacctcaattcttgacttgtgtgtacccacaggcccagcaccttgtgtaagctgccaaggcttggggcttgtaccctctgaagccatggc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183905356 355 + 184069350 gtgc----tgtctgtggcttttccaggca-tatggtgcaagctgtcagtggatctaccattctcaagtctggaggatggtggccctcttctctcagctccactaggcagtgccccagtggggactctgtgggggctctgaccccacatttcccttctgtattcactgccctagcagaggttccccatgagggctctgtccctgtcacaaatttctgcctgaacacccaggcatttccatgcatcctctgaaatctaggcatagattcccaaacctcaattcttgacttctgtgcacccagaggcccaacacctcatgtaagctgccaaggcttggggcttgtaccctctgaagccatgtc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189298722 355 + 189454096 gtgc----tgtctgtggcttttccaggca-tatggtgcaagctgtcagtggatctaccattctcaagtctggaggatggtggccctcttctctcagctccactaggcagtgccccagtggggactctgtgggggctctgaccccacatttcccttctgtactcactgccctagcagaggttccccatgagggctctgtccctgtcacaaatttctgcctgaacacccaggcatttccatgcatcctctgaaatctaggcatagattcccaaacctcaattcttgacttctgtgcacccagaggcccaacacctcatgtaagctgccaaggcttggggcttgtaccctctgaagccatgtc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178715711 355 + 178775436 gtgc----tgtctatggcttttccaggca-tatggtgcaagctgtcagtggatctaccattctggagtctggaggatggtggccctcttctctcagctccactaggcagtgcaccagtggggactctgtggggtctccgaccccacatttcccttctgtactcactgccctagcagaggttccccatgagggctctgtccctgTCACAAATTTCTGCCTGAACACCCAGGCATTtccatgcatcctctgaaatctaggcataGATTCCCaagcctcaattcttgacttctgtgcacccacagaccCAACACCTcatgtaagctgccaaggcttggggcttgtaccctctgaagccatggc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135649836 355 + 135778131 gtgc----tgtctgtggcttttccaggca-tatggtgcaagctgtcagtggatctaccattctggagtctggaggatggtggctctcttctctcagctccactcggcagtgccccagtggggactctgtgggggctccgaccccacatttcccttccgcactcattgccctagcagaggttccccatgagggctctatccctgtcacaaatttctgcctgaacacctaggcatttccatgcatcctctgaaatctaggcatagattcccaaacctcaattcttgagttctgtgcacccacaggcccaacacctcatgtaagctgccaaggcttggggcttgtaccctctgaagccatggc
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87940031 177 - 129401213 I
e canFam3.chr16             18195134  98 -  59632846 I
e calJac3.chr3             190755539 1471 - 190850796 I
e ponAbe2.chr9_random       10710009 497 +  13794794 I

a score=4297466.000000
s hg38.chr4_KI270925v1_alt    537229 1865 +    555799  
s panTro4.chr7               2093384 1868 - 161824586  
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10710506 1851 +  13794794  
i ponAbe2.chr9_random      I 497 C 0
s nomLeu3.chr7b            114004421 1866 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183905711 1873 + 184069350  
i rheMac3.chr5             C 0 I 342
s macFas5.chr5             189299077 1874 + 189454096  
i macFas5.chr5             C 0 I 766
s papAnu2.chr5             178716066 1882 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135650191 1881 + 135778131  
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87940031  177 - 129401213 I
e canFam3.chr16             18195134   98 -  59632846 I
e calJac3.chr3             190755539 1471 - 190850796 I

a score=2407306.000000
s hg38.chr4_KI270925v1_alt    539094 1035 +    555799  
s panTro4.chr7               2095252 1049 - 161824586  
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10712357 1049 +  13794794  
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chr7b            114006287 1046 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183907926 1048 + 184069350  
i rheMac3.chr5             I 342 I 25
s macFas5.chr5             189301717 1048 + 189454096  
i macFas5.chr5             I 766 I 30
s papAnu2.chr5             178717948 1047 + 178775436  
i papAnu2.chr5             C 0 I 46
s chlSab2.chr7             135652072 1027 + 135778131  
i chlSab2.chr7             C 0 I 60
e mm10.chr8                 87940031  177 - 129401213 I
e canFam3.chr16             18195134   98 -  59632846 I
e calJac3.chr3             190755539 1471 - 190850796 I

a score=34890.000000
s hg38.chr4_KI270925v1_alt    540129 29 +    555799 c-----ttttatttttgcaaatttgactccacaa
s panTro4.chr7               2096301 34 - 161824586 cggtttttttttttttgcaaatgtaactccacga
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10713406 32 +  13794794 cgtt--ttttttttttgcaaatttgactccacaa
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chr7b            114007333 27 + 115148730 c-------atttttttgcaaatttgactccacaa
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183908999 29 + 184069350 -----ttttttttttttcacatttgactccacag
i rheMac3.chr5             I 25 C 0
s macFas5.chr5             189302795 29 + 189454096 -----tttttttttttccacatttgactccacag
i macFas5.chr5             I 30 C 0
s papAnu2.chr5             178719041 29 + 178775436 -----tttttttttttgcacatttgACTCCACAG
i papAnu2.chr5             I 46 C 0
e mm10.chr8                 87940031 177 - 129401213 I
e canFam3.chr16             18195134 98 -  59632846 I
e calJac3.chr3             190755539 1471 - 190850796 I
e chlSab2.chr7             135653099 60 + 135778131 I

a score=1560051.000000
s hg38.chr4_KI270925v1_alt    540158 719 +    555799  
s panTro4.chr7               2096335 722 - 161824586  
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10713438 721 +  13794794  
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chr7b            114007360 721 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183909028 720 + 184069350  
i rheMac3.chr5             C 0 I 13
s macFas5.chr5             189302824 720 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178719070 716 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135653159 723 + 135778131  
i chlSab2.chr7             I 60 C 0
e mm10.chr8                 87940031 177 - 129401213 I
e canFam3.chr16             18195134  98 -  59632846 I
e calJac3.chr3             190755539 1471 - 190850796 I

a score=1332.000000
s hg38.chr4_KI270925v1_alt    540877 2 +    555799 tt
s panTro4.chr7               2097057 2 - 161824586 tt
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10714159 2 +  13794794 tt
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chr7b            114008081 2 + 115148730 tt
i nomLeu3.chr7b            C 0 C 0
s chlSab2.chr7             135653882 2 + 135778131 ct
i chlSab2.chr7             C 0 I 15
e mm10.chr8                 87940031 177 - 129401213 I
e canFam3.chr16             18195134 98 -  59632846 I
e calJac3.chr3             190755539 1471 - 190850796 I
e papAnu2.chr5             178719786 0 + 178775436 C
e macFas5.chr5             189303544 0 + 189454096 C
e rheMac3.chr5             183909748 13 + 184069350 I

a score=18144.000000
s hg38.chr4_KI270925v1_alt    540879 59 +    555799 tttgatccacccgctttggcctccaaaagtgctgggattaaaggtgtgagccaccacgt
s panTro4.chr7               2097059 59 - 161824586 tgtgattcacccgccccagcctccaaaagtgctgggattaaaggcatgagccaccatgc
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10714161 59 +  13794794 tgtgatccacccgcctcggactccaaaagtgctgggattaaaggcatgagccaccatga
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chr7b            114008083 59 + 115148730 tgtgatctacccgcctcggcctccaaaagtgctgggattaaaggcgtgagccaccacac
i nomLeu3.chr7b            C 0 C 0
s macFas5.chr5             189303544 15 + 189454096 --------------ctcag--------------------------gtgatctgcc----
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178719786 15 + 178775436 --------------ctcag--------------------------gtgatctgcc----
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87940031 177 - 129401213 I
e canFam3.chr16             18195134 98 -  59632846 I
e calJac3.chr3             190755539 1471 - 190850796 I
e chlSab2.chr7             135653884 15 + 135778131 I
e rheMac3.chr5             183909748 13 + 184069350 I

a score=4118.000000
s hg38.chr4_KI270925v1_alt    540938 4 +    555799 cctg
s panTro4.chr7               2097118 4 - 161824586 actg
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10714220 4 +  13794794 actg
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chr7b            114008142 4 + 115148730 cctg
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183909761 4 + 184069350 cctg
i rheMac3.chr5             I 13 C 0
s macFas5.chr5             189303559 2 + 189454096 --tg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178719801 2 + 178775436 --tg
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87940031 177 - 129401213 I
e canFam3.chr16             18195134 98 -  59632846 I
e calJac3.chr3             190755539 1471 - 190850796 I
e chlSab2.chr7             135653884 15 + 135778131 I

a score=6250.000000
s hg38.chr4_KI270925v1_alt    540942 3 +    555799 ccc
s panTro4.chr7               2097122 3 - 161824586 ccc
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10714224 3 +  13794794 ccc
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chr7b            114008146 3 + 115148730 ccc
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183909765 3 + 184069350 cct
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189303561 3 + 189454096 cct
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178719803 3 + 178775436 cct
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135653899 3 + 135778131 cct
i chlSab2.chr7             I 15 C 0
e mm10.chr8                 87940031 177 - 129401213 I
e canFam3.chr16             18195134 98 -  59632846 I
e calJac3.chr3             190755539 1471 - 190850796 I

a score=560651.000000
s hg38.chr4_KI270925v1_alt    540945 186 +    555799 aataaatgctttttaaagaatgtgttaataatttttttccagaattgtattttcagaattttgttttttgaggattgtaattttcaggattttagactgtacagatttagatcttttgggacttcaacatttgggattatgacgttcaggattgtgtcttcctgggctgtgacccaaacccATGTG
s panTro4.chr7               2097125 186 - 161824586 aataaatgccttttaaagaatgtgttaataatttttttccagaattgtatgttcagaattttgtttttttaggattgtaattttcaggattttagactgtacagatttagatcttttgggacttcaacatttgggattacaacgtttaggattgtgttttcctgggctgtggcccaaactcGTGTG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10714227 186 +  13794794 aataaatgctttttaaagaatgtgttaataatttttttccagaattctattttcagaattttgtttttttaggattgtaattttcaggattttagactgtacagatttagatcttttgggacttcaacatttgggattatgacgttcaggattgtgtcttcctgggttgtggcccaaaccTGTGTG
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chr7b            114008149 186 + 115148730 aacaaatgctttttaaagaatgtgttaataatttttttccagaattgtattttcagaattttgttttttgaggattgcaattttcaggattttaggctgtacagatttagatcttttgggacttcaacatttgagattatgacgttcaggattgtgtcttcctgggttgtggcccaaacccATGTG
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183909768 186 + 184069350 aataaatgttttttaaagaatgtgttaataacttttttccagaattgtattttcagaattttgtttcttgagaattgtaattttcaggattttagactgtagagatttagatcttttgggacttcaacatttgggattatcatgctcaggattgtgtctttctgggctgtggcccaaacccGTGTG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189303564 186 + 189454096 aataaatgttttttaaagaatgtgttaataacttttttccagaattgtattttcagaattttgtttcttgagaattgtaattttcaggattttagactgtagagatttagatcttttgggacttcaacatttgggattatcatgctcaggattgtgtctttatgggctgtggcccaaacccGTGTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178719806 186 + 178775436 aataaatgttttttaaagaatgtgttaataacttttttccagaattgtattttcagaattttgtttcttgagaattgtaattttcaggattttAGACTGTAGAGATTTAGATCTTTTGGGACTTCAACATTTGGGATTATCATGCTCAGGATTGTGTCTTTCTGGGCTGTGGCCCAAACCCGTGTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135653902 186 + 135778131 aataaatgttttttaaagaatgtgttaataacttttttccagaattgtattttcagaattttgtttcttgagaattgtaattttcaggattttagactgtagagatttagatcttttgggacttcaacatttgggattatgatgctcaggattgtgtcttcctgggctgtggcccaaacccGTGTG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190757010 183 - 190850796 aataaatgctttttaaaggatgttttaata--ttttttccagaattgtattttcagaacttt-ttttttgagaattgtaattttcaggattttagactgtagtgatttcgatattttgggacttcaacatttgggattatgatgttcaggattgtgtctttctggactgtggcccaaacccGTGTG
i calJac3.chr3             I 1471 C 0
e mm10.chr8                 87940031 177 - 129401213 I
e canFam3.chr16             18195134  98 -  59632846 I

a score=180391.000000
s hg38.chr4_KI270925v1_alt    541131 64 +    555799 GTCCAACGC--TATTTCACATGAGAGGAAAGCAAACCACGTGCACAGATGCAATGAAGGCTTAAAT
s panTro4.chr7               2097311 64 - 161824586 GTCCAACAC--TATTTCACATGAGAGGAAAGCAAACCACGTGCACAGATGCAATGAAGGCTTAAAT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10714413 64 +  13794794 GTCCAACAG--TATTTCACATGAGAGGAAAGCAAACCATGTGCACAGATGCAATGAAGGCTTAAAT
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chr7b            114008335 64 + 115148730 ATCCAATGC--TATTTCATATGAGAGGAAAGCAAACCATGTGCACGGATGCAATGAAGGCTTAAAT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183909954 66 + 184069350 GTCCAACACTCTATTTCACACGAGAAGAAAGCAAACCATGTGCACAGATGCAACGAAGGCTTAAAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189303750 66 + 189454096 GTCCAACACTCTATTTCACACGAGAGGAAAGCAAACCATGTGCACAGATGCAACGAAGGCTTAAAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178719992 66 + 178775436 GTCCAACACTTTATTTCACACGAGAGGAAAGCAAACCATGTGCACAGATGCAACGAAGGCTTAAAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135654088 66 + 135778131 GTCCAACACTCTATTTCACATGAGAGGAAAGAAAAGCATGTGCACAGATGCAACGAAGGCTTAAAT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190757193 64 - 190850796 GTCCAACACTCTATTTTACATGAGGGGAAGGCAAACCACATACACAGATGCAATT--GTCTTAAAT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87940208 48 - 129401213 GTTCAAAAA--TATTTAACACAAGAAGAAGTGAA---ATGTGCACCCACAGAA-------------
i mm10.chr8                I 177 C 0
e canFam3.chr16             18195134 98 -  59632846 I

a score=1079955.000000
s hg38.chr4_KI270925v1_alt    541195 326 +    555799 AGGCGTCATGTATTGATTATATCCCTGGAAAACATGATTAAGATGATACGTAGCGACTTTTTTTTTCCCC---AGTGAAAAAGATCCACA--TTCTTTTTCTTG-------------TGTGGAA-------------CTAAACACAATTTCTGAATCAATGTAAGTGAATGTGAATCACCATGTTCACTTAGCTGATGCTCCTTTATTAACGGGGATAG-AAGGGACGTGATTCAAAGAGATGGCGGCACAGGACCCATGACCT---AAGGAAGCTGCAGTGGGTGAAGG--------GGAGAAACAGAGGAGCAGGGGCTGGAGAAAGAGTGGGGAGTCATCAACTACCCTCCTTGC---TCCCGGCATCT
s panTro4.chr7               2097375 326 - 161824586 AGGCATCATGTATAGATTATATCCCAGGAAAACATGATTAAGATGATACATAGCGACTTTTTTTTTCCCC---AGTGAAAAAGATCCACA--TTCTTTTTCTTG-------------TGTGGAA-------------TTAAACACAATTTCTGAATCAATGTAAGTGAATGCAAATCACCACGTTCACTTAGCTGATGCTCCTTTATTAACAGGGATAG-AAAGGAGGTCATTCGAAGAGATGATGGCGCGGGACCCAGGACCT---GAGGAAGCTGCAGTGGGTGAAGG--------GGAGAAACAGAGGAGCAGGGGATGGAGAAAGAGTGGGGAGTCATCAACCACCCTCCTTTC---TCCTGGCATCT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10714477 322 +  13794794 AGGCATCATGTATAGATTACAGCCCAGGAAAATATGATTAAGATGATGCATAGCAA--TTTTTTTTTCCC---AGTGAAAAGGATC--CA--TTCTTTTTCTTG-------------TGTGGAA-------------TTAAACACAATTTCTGAATCAATGTAAGTGAATGCAAATCACCATGTTCACTTAGCTGATGCTCCTTTATTAACAGGGATAG-AACGGAGGTGAATCGAAGAGATGATGGTGCGGGACCCAGTACCT---GAGGAAGCTGCAGTGGGTGAAGG--------GGAAAAACAGAGGAGCAGGGGCTGGAGAAAGAGTGGGGAGTCATGAACTACCCTCCTTGC---TCCTAGCGTCT
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chr7b            114008399 334 + 115148730 AGGCGTCATGTATAGATTATATCCCAGGAAAACATGATTAAGATGGTACGTAGCGACTTTTATTTTTCCC---AGTGAAAAAGGTCCACA--TTCTTTTTCTTG-------------TGTGGAA-------------CTAAACACAATTTCTGAATCAATGTAAGTGAATGCAAATCACCATGTTCACTTAGCTGATGCTCCTTTTTTAATGGGAATAG-AAGGGAGGTGATTTGAAGAGATGATGGTGTGGGACCCTGGACCT---AAGGAAGCTGCAGTGGGTGAAGGGGTGAAGAGGAGAAACAGAGGAGCAGGGGCTGGAGAAAGAGTGGGGAGTCATCAACTACCCTCCTTGC---TCCCGGCGTCT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183910020 322 + 184069350 AGGTGTCATGTATAGGTTATATCCCAGGAAAACATGATTAAGATGATACATAGTGACCTTTTT----CTC---AGTGAAAAAGATCCACA--TTGCTTTTCTTG-------------TGTGGAA-------------CTAAACACAATTTCTGAATCAATGTAAGTGAATGCAAATCAGCATGTTCACTCAACTGATGCTCCTTTATTAATGGGGATAG-AAGGGAGGTGATTGGAAGAGATGATGGCCCGGGACCCAGGACCT---GGGGAAGCTGCAGTGGGTGAAGG--------GGAGAAACAGAGGAGCAGGGGCTGGAGAAGGAGTGGAGAGTCATTGACTACCCTCCTTGC---TCCTGGCATCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189303816 322 + 189454096 AGGTGTCATGTATAGGTTATATCCCAGGAAAACATGATTAAGATGATACATAGCGACCTTTTT----CTC---AGTGAAAAAGATCCACA--TTGCTTTTCTTG-------------TGTGGAA-------------CTAAACACAATTTCTGAATCAATGTAAGTGAATGCAAATCAGCATGTTCACTCAACTGATGCTCCTTTATTAATGGGGATAG-AAGGGAGGTGATTGGAAGAGATGATGGCCCGGGACCCAGGACCT---GGGGAAGCTGCAGTGGGTGAAGG--------GGAGAAACAGAGGAGCAGGGGCTGGAGAAGGAGTGGGGAGTCATTGACTACCCTCCTTGC---TCCTGGCATCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178720058 322 + 178775436 AGGTGTCATGTATAGGTTATATCCCAGGAAAATATGATTAAGATGATACATAGCGACCTTTTT----CTC---AGTGAAAAAGATCCACA--TTGCTTTTCTTG-------------TGTGGAA-------------CTAAACACAATTTCTGAATCAATGTAAGTGAATGCAAATCAGCATGTTCACTCAACTGATGCTCCTTTATTAATGGGGATAG-AAGGGAGGTGATTGGAAGAGATGATGGCCCGGGACCCAGGACCT---GGGGAAGCTGCAGTGGGTGAAGG--------GGAGAAACAAAGGAGCAGGGGCTGGAGAAGGAGTGGGGAGTCATCGACTACCCTCCTTGC---TCCTGGCATCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135654154 322 + 135778131 AGGCGTCATGTATAGGTTATATCCCAGGAAAACATGATTAAGATGATACATAGCGACCTTTTT----CCC---AGCGAAAAAGATCCACA--TTGCTTTCCTTG-------------TGTGGAA-------------CTAAACACAATTTCTGAATCAATGTAAGTGAATGCAAATCAGCATGTTCACTTAACTGATGCTCCTTTATTAATGGGGATAG-AAGGGAGGTGATTGGAAGAGATGATGGCCCAGGACCCAGGACCT---GGGGAAGCTGCAGTGGGTGAAGG--------GGAGAAACAGAGGAGCAGGGGCTGGAGAAAGAATGGGGAGTCATCGACTACCCTCCTTGC---TCCTGGCGTCT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190757257 328 - 190850796 AGACATCATGTATAGATTATATCCCAGGAAAACATGATTAAGATGATACACAGTGACTTTTTTCCCCCCCTCAAGTGAAAAAGATCCACA--TTCCTTTTCTTG-------------TGTGGAA-------------CTAAACACAATTTCTGAACCAATGTAAGTAAATACAAATCAGCATGTTCACTTAACTCATGCTCCTTTATTAAAGGGGATAG-AAGGGAAGTGTCTCAAAGAGATGATAGCCTGGGACCCAGGACCT---GGGGAAGCTGCAGT-GGTGAAGG--------GGAGAAACAGGGGGGCAGGTGCTGGACAAAGAGTTGGGAGTCATCAACTCCCCTCCCTGC---TCCTGTCCTCT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87940256 312 - 129401213 -------ACATGTAGATTGTGTCTTGGGAAGCCCTAGTCAAGGTGACACATGGTGACTT--------CTC---CATTAAAGACATACTCGGCTCCTTTTTCTAG-------------TGTTGGAAGCCAGCGTTCACATAGTCAGGACCACTGAAATAATGTAATTTGATGTAGATCACCACTCTCATGGAAGTCACACACTTTCCATAAAGGGGCTAATGAGGAAAGTGACTAGAACCAAGCACAGCTCAGAACC--------------------ACAGTGGGTGAAGG--------AGAGATGAGAAATGGTGGGTAATGAAGGAAGAAC-GGGAACCCTGGCCTTCTTTCCTTGTTGATCCCAGCCTCT
i mm10.chr8                C 0 I 2906
s canFam3.chr16             18195232 338 -  59632846 AGACATCATATGTAGATTACATCCTAGAAAAACATGATCAAGATTGCTCATAGTGACATTTCTGT--TAC---AGTGACAATCATCCTCA--TTCTTTCTCTGGTATTGGAAGCCAATATGGAA-------------CTAATCATGATTCCTGAATTAATGTAACTTAATATAACTCAGCACCCTCACTTAAAACTTGCTTCTTCATTCAAGGAG-TAG-AAGGCAGATGATTAGAACTGAGGATGGTTCAAGAGCCATGATCCCGGGGGGAAGCTACAGGGGGCAACAA--------GGAGAAAAGGAGGAATAAAGGG-GGAGAAAGAATATAAAACCATCAATTTCCCTCATTGC---TCCTGGCCCTT
i canFam3.chr16            I 98 C 0

a score=543188.000000
s hg38.chr4_KI270925v1_alt    541521 167 +    555799 GGTGTTTGGAGCCCAGAGGTCTTCTCTAAGGCCTCGGAGAAGCTTCCAAGTCTGTTCATTTCTCTTTCCCCACCCCTGCTTGTATCACAAATAAAGAAATTATTGACAACTGAGTTCCTGACTAGGTGGCAGGATTTTAGGGATCCTTCACCTCGTCCAAACCTCAT
s panTro4.chr7               2097701 167 - 161824586 GGTGTTCGGAGCCCAGAGGTCTTCTCTAGGGCCTCGGAGAAGCTTCCAAGTCTGTTCATTTCTCTTTCCCCACCCCTGCTTGTATCACAAATAAAGAAATTATTGACAACTGAGTTCCTGACTAGGTGGCAGGATTTTAGGGACCCTTCACCTCGTCTGAAACTCAT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10714799 167 +  13794794 GGTGTTCGGAGCCCAGAGGTCTTCTCTAGGGCCTCGGAGAAGCTTCCAAGTCTGTTCATTTCTCTTTCCCCACCCCTGCTTGTATCACAAATAAAGAAATTACTGACAACTGAGTTCCTGACTAGGTGGCAGGATTTTAGAGACCCTTCACCTCGTCTGAACCTCAT
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chr7b            114008733 167 + 115148730 GGTGTTTGGAGCCCAGAGGTCTTCTCTAGGGCCTCAGAGAAGCTACCAAGTCTGTTCATTTCTCTTTCCCCACCCCTGCTTGTATCACAAATAAAGAAATTATTGACAACTGAGTTCCTGACTAGGTGGCAGGATTTTAGGGACTCTTCACCTCGTCTGAACCACAT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183910342 162 + 184069350 GGTGTTTGGAGCCCAGAGGTCTTCTCTAGGGCCTCGGAGAAGCTTCCACGTCTGTCCATTTCTCTTT-CCCACCCCTGCTTGTATCAC----AAAGAAATTATTGACAACTGAGTTCCTGACTAGGTGGCAGGATTTTAGGGACCCTTCACCTTGTCCGAACTTCAT
i rheMac3.chr5             C 0 I 40
s macFas5.chr5             189304138 162 + 189454096 GGTGTTTGGAGCCCAGAGGTCTTCTCTAGGGCCTCGGAGAAGCTTCCACGTCTGTCCATTTCTCTTT-CCCACCCCTGCTTGTATCAC----AAAGAAATTATTGACAACTGAGTTCCTGACTAGGTGGCAGGATTTTAGGGACCCTTCACCTTGTCCGAACCTCAT
i macFas5.chr5             C 0 I 40
s papAnu2.chr5             178720380 162 + 178775436 GGTGTTTGGAGTCCAGAGGTCTTCTCTAGGGCCTCGGAGAAGCTTCCACGTCTGTCCATTTCTCTTT-CCCACCCCTGCTTGTATCAC----AAAGAAATTATTGACAACTGAGTTCCTGACTAGGTGGCAGGATTTTAGGGACCCTTCACCTTGTCCGAACTTCAT
i papAnu2.chr5             C 0 I 40
s chlSab2.chr7             135654476 166 + 135778131 GGTGTTTGGATCCCAGAGGTCTTCTCTAGGGCCTCGGAGAAGCTTCCACGTCTGTCCATTTCTCTTT-CCCACCCCTGCTTGTATCACAAATAAAGAAATTATTGACAACTGAGTTCCTGACTAGGTGGCAGGATTTTAGGGACCCTTCACCTTGTCCGAACTTCAT
i chlSab2.chr7             C 0 I 40
s calJac3.chr3             190757585 161 - 190850796 GTTGTTTGGAGCCCAGAGGTCTTCTCTAGGGCCTCAGAGAAGCTTCTAAGTCCATTCATTTCTCTTTCCCCACCCCTGCTTGTAGCATAAATAAAGAAATTATTGACATCTGAGTTCCTGACTATGTGGCAGGATTCTAGGGACCCTT------ATCAGGATTTCGG
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18195570 166 -  59632846 GGAGTTATGACCCCAGAGGTCTTTTATAGGACCTTGATCTAGCTTCTGGGTGTCTTCATAACTGTTTCTCCACCCTAACTT-TAGCACAAATAAAGAGATTTTTGACATATGAATGCCTGGCTGAGTGATAGCTTTTTAGGAATCCTTCACCCAGTCTAAATTCTAC
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87940568 2906 - 129401213 I

a score=112898.000000
s hg38.chr4_KI270925v1_alt    541688 135 +    555799 GAAGGTAGTGGGAGTCCCATGGGTTAGTTAGCAATAGTCCTTGAGATTATTTGTTCATATAAATAATCACAATACTCATAGTCATCTTGCTTTTCTCATAATGCCCAGCTGGGGGACGGTGGGGGCAGAGAGGAC
s panTro4.chr7               2097868 135 - 161824586 GAAGGTAGTGGGAATCCCATAGGTTAGTTAGCAATAGTCCCTGAGATTATTTGGTCATATAAATAATCAGAAAACTCATAGTCATCTTGCTTTTCTCATAATGTTCAGCTGGGGGATGGTTGGGGTAGGGAGGAC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10714966 135 +  13794794 GAAGGTAGTGGGAGTCCCATAGGTTAGTTAGCAATAGTCCTTGAGATTATTTGGTCATATAAATAATCAGAAAACTCATAGTCATCTTGCTTTTCTCATAATGCCCAGCTGGGGGATGGTGGGGGCAGGGAGGac
i ponAbe2.chr9_random      C 0 I 680
s nomLeu3.chr7b            114008900 135 + 115148730 GAAAGTAGTGGGAGTCCCATGGATTAGTTAGCAATGGTTCTTGAGATTATTTGGTCATATAAATAATCAGAATACTTGTAGTCATCTTGCTTTTCTCATAATGCCTAGCTGGGGGATGGTGGGGGCAGAGAGGAC
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190757746 129 - 190850796 GTGGGTGGTGGGAGTCCCAT--GTTAGTTAACAATAGTCCTAGAGATTATTTGGTTATATAAATAATCAGAACAGTTTTA--CATCTTGCTTTTCTATTAATGCCCAGCTGAGGGATGGTGGGAGCAGAGGAA--
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18195736 120 -  59632846 ---TTTCTAGGGAGTGATATGGATTAATAACCAGGGATCCTTGAGATTATTTGGTACCCTA------CAGCAAATTTTTAGTCATCTTGATTTTCTCCTAACACCTAGCT----GAAGTTAAGGGTAGAGGGC--
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87940568 2906 - 129401213 I
e chlSab2.chr7             135654642  40 + 135778131 I
e papAnu2.chr5             178720542  40 + 178775436 I
e macFas5.chr5             189304300  40 + 189454096 I
e rheMac3.chr5             183910504  40 + 184069350 I

a score=244926.000000
s hg38.chr4_KI270925v1_alt    541823 482 +    555799  
s panTro4.chr7               2098003 526 - 161824586  
i panTro4.chr7             C 0 C 0
s nomLeu3.chr7b            114009035 500 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190757875 466 - 190850796  
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18195856 562 -  59632846  
i canFam3.chr16            C 0 I 2246
e mm10.chr8                 87940568 2906 - 129401213 I
e chlSab2.chr7             135654642  40 + 135778131 I
e papAnu2.chr5             178720542  40 + 178775436 I
e macFas5.chr5             189304300  40 + 189454096 I
e rheMac3.chr5             183910504  40 + 184069350 I
e ponAbe2.chr9_random       10715101 680 +  13794794 I

a score=2991.000000
s hg38.chr4_KI270925v1_alt    542305 6 +    555799 tcaaag
s panTro4.chr7               2098529 6 - 161824586 ttaaag
i panTro4.chr7             C 0 C 0
s nomLeu3.chr7b            114009535 6 + 115148730 tcaaag
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190758341 6 - 190850796 tcaaag
i calJac3.chr3             C 0 I 809
e mm10.chr8                 87940568 2906 - 129401213 I
e canFam3.chr16             18196418 2246 -  59632846 I
e chlSab2.chr7             135654642 40 + 135778131 I
e papAnu2.chr5             178720542 40 + 178775436 I
e macFas5.chr5             189304300 40 + 189454096 I
e rheMac3.chr5             183910504 40 + 184069350 I
e ponAbe2.chr9_random       10715101 680 +  13794794 I

a score=17442.000000
s hg38.chr4_KI270925v1_alt    542311 67 +    555799 atcactaatattccattttatgtctataccacattttgtttatccatctatccctcaatagactttt
s panTro4.chr7               2098535 67 - 161824586 atcactaatattccattttatttctataccacattttgtttatccatctattcctcaatagactttt
i panTro4.chr7             C 0 C 0
s nomLeu3.chr7b            114009541 67 + 115148730 atcactaatattccattttatgtctataacacattttgtttatccgtctatccctcaatagactttt
i nomLeu3.chr7b            C 0 M 895
e mm10.chr8                 87940568 2906 - 129401213 I
e canFam3.chr16             18196418 2246 -  59632846 I
e calJac3.chr3             190758347 809 - 190850796 I
e chlSab2.chr7             135654642 40 + 135778131 I
e papAnu2.chr5             178720542 40 + 178775436 I
e macFas5.chr5             189304300 40 + 189454096 I
e rheMac3.chr5             183910504 40 + 184069350 I
e ponAbe2.chr9_random       10715101 680 +  13794794 I

a score=22362.000000
s hg38.chr4_KI270925v1_alt    542378 258 +    555799 taggttgtttccaccttgtggttgctgtaaataaggctgctgtgatgctgcaatgaacacaggtgtaGCAgccaggtgtggtggcatgcgcctgtagttcctgctactcaggcttctgaggcaggaagatcccttgagcccaggagttctgggctgcagtgtgctgtgttgatcagatgtctgcatgaaattagacattagtacagtgacctcccgggataggggactaccaggttgcctaaggagtggcgaaccggc
s panTro4.chr7               2098602 258 - 161824586 taggttgtttccaccttgtggttcgtgtaaataaggctgctgtgatgctgcaatgaacacaggtgtagcagGCAAgtgtggtggcatgcacctgtagttcctgctactcaggcatctgaggtaggaagattgcttgagcccaggagtcctgggctgcagtgtgctgtgttgatcagatgtctgcacgaaattagacattagtacagtgacctcctgggataagggactaccaggttgcctaaggaggggcgaaccggc
i panTro4.chr7             C 0 C 0
e mm10.chr8                 87940568 2906 - 129401213 I
e canFam3.chr16             18196418 2246 -  59632846 I
e calJac3.chr3             190758347 809 - 190850796 I
e chlSab2.chr7             135654642  40 + 135778131 I
e papAnu2.chr5             178720542  40 + 178775436 I
e macFas5.chr5             189304300  40 + 189454096 I
e rheMac3.chr5             183910504  40 + 184069350 I
e nomLeu3.chr7b            114009608 895 + 115148730 M
e ponAbe2.chr9_random       10715101 680 +  13794794 I

a score=300.000000
s hg38.chr4_KI270925v1_alt    542636 1 +    555799 c
s panTro4.chr7               2098860 1 - 161824586 c
i panTro4.chr7             C 0 I 186
s nomLeu3.chr7b            114010522 1 + 115148730 C
i nomLeu3.chr7b            M 895 C 0
e mm10.chr8                 87940568 2906 - 129401213 I
e canFam3.chr16             18196418 2246 -  59632846 I
e calJac3.chr3             190758347 809 - 190850796 I
e chlSab2.chr7             135654642 40 + 135778131 I
e papAnu2.chr5             178720542 40 + 178775436 I
e macFas5.chr5             189304300 40 + 189454096 I
e rheMac3.chr5             183910504 40 + 184069350 I
e ponAbe2.chr9_random       10715101 680 +  13794794 I

a score=1713.000000
s hg38.chr4_KI270925v1_alt    542637 59 +    555799 AACAGGGGGGTCGCGCCCGTGGACAGCCCTGCAGAGGGGGTGGGGGGGAGGCGGGGTTG
s nomLeu3.chr7b            114010523 41 + 115148730 AGCAGGGAGATCATGCCCATGGACGGCCCCGCAGCAGGGG------------------G
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87940568 2906 - 129401213 I
e canFam3.chr16             18196418 2246 -  59632846 I
e calJac3.chr3             190758347 809 - 190850796 I
e chlSab2.chr7             135654642 40 + 135778131 I
e papAnu2.chr5             178720542 40 + 178775436 I
e macFas5.chr5             189304300 40 + 189454096 I
e rheMac3.chr5             183910504 40 + 184069350 I
e ponAbe2.chr9_random       10715101 680 +  13794794 I
e panTro4.chr7               2098861 186 - 161824586 I

a score=1607.000000
s hg38.chr4_KI270925v1_alt    542696 9 +    555799 TCGCACCCG
s ponAbe2.chr9_random       10715781 9 +  13794794 TCGTACCTG
i ponAbe2.chr9_random      I 680 C 0
s nomLeu3.chr7b            114010564 9 + 115148730 TCATGCCCG
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87940568 2906 - 129401213 I
e canFam3.chr16             18196418 2246 -  59632846 I
e calJac3.chr3             190758347 809 - 190850796 I
e chlSab2.chr7             135654642 40 + 135778131 I
e papAnu2.chr5             178720542 40 + 178775436 I
e macFas5.chr5             189304300 40 + 189454096 I
e rheMac3.chr5             183910504 40 + 184069350 I
e panTro4.chr7               2098861 186 - 161824586 I

a score=19864.000000
s hg38.chr4_KI270925v1_alt    542705 39 +    555799 TGGACAGCCCCGCAGCAGGGGGCTCGTGCCCGTGGACAG
s panTro4.chr7               2099047 39 - 161824586 TGGACAGCCCCGCAGCAGGGAGATCATGCCCGTGGACAG
i panTro4.chr7             I 186 C 0
s ponAbe2.chr9_random       10715790 39 +  13794794 TGGACAGCCCCGCAGCAGGGAGATCGTGCCAGTGGGCAG
i ponAbe2.chr9_random      C 0 I 198
s nomLeu3.chr7b            114010573 39 + 115148730 TGGACGGCCCCGCAGCAGGGAGATCATGCCCGTGGACAG
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87940568 2906 - 129401213 I
e canFam3.chr16             18196418 2246 -  59632846 I
e calJac3.chr3             190758347 809 - 190850796 I
e chlSab2.chr7             135654642 40 + 135778131 I
e papAnu2.chr5             178720542 40 + 178775436 I
e macFas5.chr5             189304300 40 + 189454096 I
e rheMac3.chr5             183910504 40 + 184069350 I

a score=1952.000000
s hg38.chr4_KI270925v1_alt    542744 9 +    555799 GCCTGCAGC
s panTro4.chr7               2099086 9 - 161824586 CCCTGCAGC
i panTro4.chr7             C 0 I 127
s nomLeu3.chr7b            114010612 9 + 115148730 CCCCGCAGC
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87940568 2906 - 129401213 I
e canFam3.chr16             18196418 2246 -  59632846 I
e calJac3.chr3             190758347 809 - 190850796 I
e chlSab2.chr7             135654642 40 + 135778131 I
e papAnu2.chr5             178720542 40 + 178775436 I
e macFas5.chr5             189304300 40 + 189454096 I
e rheMac3.chr5             183910504 40 + 184069350 I
e ponAbe2.chr9_random       10715829 198 +  13794794 I

a score=-426.000000
s hg38.chr4_KI270925v1_alt    542753 15 +    555799 GCGGGGCGGGGGGGC
s nomLeu3.chr7b            114010621  6 + 115148730 AGGGGG---------
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87940568 2906 - 129401213 I
e canFam3.chr16             18196418 2246 -  59632846 I
e calJac3.chr3             190758347 809 - 190850796 I
e chlSab2.chr7             135654642 40 + 135778131 I
e papAnu2.chr5             178720542 40 + 178775436 I
e macFas5.chr5             189304300 40 + 189454096 I
e rheMac3.chr5             183910504 40 + 184069350 I
e ponAbe2.chr9_random       10715829 198 +  13794794 I
e panTro4.chr7               2099095 127 - 161824586 I

a score=10057.000000
s hg38.chr4_KI270925v1_alt    542768 26 +    555799 GGGGCTCGCGCCCGTGGACAGCCCCG
s panTro4.chr7               2099222 26 - 161824586 GGGGATCGTGCCTGTGGACAGCTCCC
i panTro4.chr7             I 127 C 0
s ponAbe2.chr9_random       10716027 26 +  13794794 GGGGGTCGTGCCTGTGGACAGCCTCG
i ponAbe2.chr9_random      I 198 C 0
s nomLeu3.chr7b            114010627 21 + 115148730 -----TCATGCCCGTGGACAGCCCCG
i nomLeu3.chr7b            C 0 C 0
e mm10.chr8                 87940568 2906 - 129401213 I
e canFam3.chr16             18196418 2246 -  59632846 I
e calJac3.chr3             190758347 809 - 190850796 I
e chlSab2.chr7             135654642 40 + 135778131 I
e papAnu2.chr5             178720542 40 + 178775436 I
e macFas5.chr5             189304300 40 + 189454096 I
e rheMac3.chr5             183910504 40 + 184069350 I

a score=47928.000000
s hg38.chr4_KI270925v1_alt    542794  92 +    555799 cagcagggg-atcatgcctataaacagcccctgcactccggcctaggaaacatagtgagac--------cccatctattaaaaaaaaaaa--------GGGTACGGAGA
s panTro4.chr7               2099248 101 - 161824586 cagcagggggatcatgcctataaacagcccttgcactccaggctgggaaacagaatgagac--------cctatttattaaaaaaaaaaaaGGGGGTGGGGTGGGGAGA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10716053  97 +  13794794 CTGCACggg-gtcatgcctataaacagccactgcacttcggcctgggaaacatagtgagac--------cacgtttattaaaaaaaaaaaaGGGGG--GGGTGGGG-GA
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chr7b            114010648  92 + 115148730 cagcagggg-atcatgcctataaacagcccctgcactctggcttaggaaacatagtgagac--------cccatctattaaaagaaaaaa--------GGGTAGGGAGA
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190759156  93 - 190850796 cagcagggggatcatctctgtgaacaagc-ctgcact-tggcctgggaaac--agtgagaccccccccacccatctcataaaaaaaaaGA--------GG----GGAGA
i calJac3.chr3             I 809 C 0
e mm10.chr8                 87940568 2906 - 129401213 I
e canFam3.chr16             18196418 2246 -  59632846 I
e chlSab2.chr7             135654642  40 + 135778131 I
e papAnu2.chr5             178720542  40 + 178775436 I
e macFas5.chr5             189304300  40 + 189454096 I
e rheMac3.chr5             183910504  40 + 184069350 I

a score=260513.000000
s hg38.chr4_KI270925v1_alt    542886 286 +    555799 gaacacaggtgtacaagtatctatttgagtaactgctttccattcttttgaagata------GGTATAGGTAGATATAGATACAGATATAGAGATTTACAGATATGagtgggattactgaatcatatggtaattctatgtctaaatttttgaggaaccata----tgttttccacagctgatgtactatttttcatacccaccctcaatgcacaagagttacaatttttccacatccttgtcagcacttgttattttctgggtg-------tttttgctttgttttgaggccaaatctccttc
s panTro4.chr7               2099349 286 - 161824586 Aaacacaggtgcacaagtatctatttgagtaactgctttccattcttttgaagata------gatataggtagataaagatacagatatagagatttatagatgtgagtgggattactgaatcatacggtaattctatgtctaaattcttgaggaaccgta----tgttttccacagccgatgtactatttttcatacccaccctcaatgcaccatagttacaatttttccacatccttgtcagcccttgttattttctgggtg-------tttttgttttgttttgaggccgagtctccttc
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10716150 286 +  13794794 gaacacaggtgtacaagtatgtatttgagtatctgctttccattcttttgaagata------catataggtagataaagatacaaatatagagatttatagatgtgagtgggattactgaatcatatggtaattctatgtctaaatttttgaggaaccgta----tgttttccacagctgatgtactatttttcatacccaccctcaatgcacaggaattacaatttttccacatccttgtcagcacttgttattttctgggtg-------tttttggtttgttttgaggtcgagtctccttc
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chr7b            114010740 286 + 115148730 GAAaacaggtgtacaagtatctatttgagtaactgctttccactcttttgaagata------GGTATAGGTAGATATAGACACAGATATAGAGATTTATAGAtatgagggggattactgaatcatatggtaattctatgtctaaatttttgaggaaccata----tgctttccacagctgacgtgctatttttcatacccaccctcaatgcacaagagttacaatttttccacgtccttatcagcacttgttattttctgggtg-------tttttgctttgttttgagtccgagtcttcttc
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190759249 296 - 190850796 gaacacaggtgtacaagtgtctacatgagtaactgctttccattcttttgACGACAGGAAAGGGTAGAGACAGATACATATACAGAGATAGAgatttatagacatgagtgggattactgaatcatatggtaattctatgtctaaatttttgagaaaccatt----tattttccagagctgatgtactatttttcattcccaccctcaatgcacaagaattacaatttttccacatccttgccagcac---ttattttctgggtgtttttgttttttgttttgttttgagaccgtgtctccctc
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18198664 242 -  59632846 gaacatgcatgtgcaa-tatctgtctgaatccctgctttcaattattttatgtata--------------------------------------tatccatctgtgaatgagattactgaatcatatggtaattccatgctttagttgttcaggaactagaatactattttccacatcagcttcaccattttgtattcccaccagtcatgcacaaaggttccaatttctccatatccttgctaacacttgttgttctc-------------ctttatttttaat---------aatatccatc
i canFam3.chr16            I 2246 I 195
e mm10.chr8                 87940568 2906 - 129401213 I
e chlSab2.chr7             135654642  40 + 135778131 I
e papAnu2.chr5             178720542  40 + 178775436 I
e macFas5.chr5             189304300  40 + 189454096 I
e rheMac3.chr5             183910504  40 + 184069350 I

a score=131291.000000
s hg38.chr4_KI270925v1_alt    543172 253 +    555799 tgtct-gcaggctggagtgcagtggcgtgatctcggctcactgcaacctgtgcctcccaggttcaagcgattctcgtgcctcagcctctcaattagctgggattacacatgtgtgccaccatgcccgactaattgtgtgtgtgtgt--------gttttgt--tttgttttgttt---------tttggtacagatgaggtttcaccatgttggccaggttgctgtcaaactcccgacctcaggtgatccacctgcctaggcctcccaaagg------g
s panTro4.chr7               2099635 254 - 161824586 tatct-ccaggctggagctcagtggcgtgatctcggctcactgcaacctccgcctcccaggttcaagtgattctcgtgcctcagcctctcaattagctgagattacacatgtgtgccaccatgcctgactaattgtgtgtgtgtgttgttttttgttttgt--ttatttttatttatttatttttttggtacagatgaggtttcaccctgttggccaggatgctgtcaaactcccgacctcaggtgatcc----------------caaagg------g
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10716436 253 +  13794794 tgtct-ccaggctggagtacagtggcttgatctcggctcactgcaacctccgcctcccaggttcaagcgattctcatgcctcagcctctcaattagctgagattaaacatgtgtgccaccatgaccgactaacagtgtgtaagtgtgtgtgtgtgttgttt--tttgttttattt-ttattttttttggtacagatgaggtttaaccacattggccaggctgctgtcaaactcccgacctcaggtgatcc----------------caaagg------g
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chr7b            114011026 269 + 115148730 tgtct-ccaggctggagtgcagtggtatgatcttggcttactgtaacctccgcctcccaggttcaagcgattctcatgcctcagcctctaaattagctgggattacacacgtttgccaccatgcccgactaattgtgtgtgtgtgtgtgtgtgtgtgttgttgttgttgttgttt---------tttggtacagatgaggtttcaccatgttggcccggttactgtcaaactcccgacctcaggtgatccacctgcctcggcctcccacctgatctcag
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190759545 191 - 190850796 tgtctcccaggctggagtgcagc--catgatctctg-----------------------------------------gtctccgcctcccaattagctgggactacacacatgtgccaccacgcctgactaa-------------------------------ttctttttgtat--------ttttagtagagacaaggtttcaacatgttggctaggctggtctcaaactcccaacctgagatgatccacctgcctcggcctcccaaagt------g
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87940568 2906 - 129401213 I
e canFam3.chr16             18198906 195 -  59632846 I
e chlSab2.chr7             135654642  40 + 135778131 I
e papAnu2.chr5             178720542  40 + 178775436 I
e macFas5.chr5             189304300  40 + 189454096 I
e rheMac3.chr5             183910504  40 + 184069350 I

a score=121122.000000
s hg38.chr4_KI270925v1_alt    543425 215 +    555799 ctgggattacaggtgtgaaccagcatgcccagcccctgatttttttg-ttttttcttttttgatagcagccatcttaatgggtgtgcag---gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt-tttaatgtcacattggt-gattctaatgtgtaACCAGCAAAGAAAAGCATGGATtctgggtctcaatttttcatctaggtaaaccagagc
s panTro4.chr7               2099889 220 - 161824586 ctgggattataggtgtgaaccagcatgcatggcccctgatttttttg-ttttttcttttttgatagcagccatcctaatggttgtgcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttaatatcacattagttgattctaatgtgtaACCAGGAAAGAAAAGCATGGATtctgagtctcaatttttcatctaggtaaactggagc
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10716689 197 +  13794794 ctggcattacaggtgtgaaccagtgtgcctggccccgatttcttgtt-tttttttttttttgatagcagccatcctaatgggtgtgcag----------------------tgtgtgtgtgtgtgtgtgtgtttaatgtcacattggt-gattctaatgtgtaACCAGGAAAGAAAAGCATGGATtctgggtctcaatttttcatctaggtaaaccggagc
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chr7b            114011295 196 + 115148730 ctgggattacagatgtgaaccagcatgcctggcccctgattgttttgtttttttcttttttgatagcagccatcctaatgggtgtgc------------------------tgtgtgtgtgtgtgtgtgtgtttaatgtcacattGGT-GATTCTAATGTGTAACCAGCAAAGAAAAGCATGGATtccgggtctcaatttttcatctaggaaaaccggagc
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190759736 186 - 190850796 ctgcgattacaggggtgagccacggcacccggcccctg---tttttg-ttttttcttttttgatagtagccatcctaatgggtgtgcag------------------------------tgTGTGTGTTTTCCTAACGTCATATTGGT-GATTCTAATGTGTAACGAGCAAAGAAAAGCATGGATTCTGGGTCTCAATTTTTCATCTAGGTAAACCAGAGC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18199101  96 -  59632846 ctgggctcgccatggggaacc------------------------tg-cttctccttc-------------------------------------------------------------tgcctatgtct-------------ttgcc-tctctctgtgtgtctctcacaaataaataaataaaatct------------------taaaaaaa-------
i canFam3.chr16            I 195 C 0
e mm10.chr8                 87940568 2906 - 129401213 I
e chlSab2.chr7             135654642  40 + 135778131 I
e papAnu2.chr5             178720542  40 + 178775436 I
e macFas5.chr5             189304300  40 + 189454096 I
e rheMac3.chr5             183910504  40 + 184069350 I

a score=598870.000000
s hg38.chr4_KI270925v1_alt    543640 499 +    555799  
s panTro4.chr7               2100109 500 - 161824586  
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10716886 498 +  13794794  
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chr7b            114011491 502 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s calJac3.chr3             190759922 497 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87943474 469 - 129401213  
i mm10.chr8                I 2906 C 0
s canFam3.chr16             18199197 500 -  59632846  
i canFam3.chr16            C 0 C 0
e chlSab2.chr7             135654642  40 + 135778131 I
e papAnu2.chr5             178720542  40 + 178775436 I
e macFas5.chr5             189304300  40 + 189454096 I
e rheMac3.chr5             183910504  40 + 184069350 I

a score=3577575.000000
s hg38.chr4_KI270925v1_alt    544139 1074 +    555799  
s panTro4.chr7               2100609 1075 - 161824586  
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10717384 1079 +  13794794  
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chr7b            114011993 1080 + 115148730  
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183910544 1092 + 184069350  
i rheMac3.chr5             I 40 C 0
s macFas5.chr5             189304340 1090 + 189454096  
i macFas5.chr5             I 40 C 0
s papAnu2.chr5             178720582 1074 + 178775436  
i papAnu2.chr5             I 40 C 0
s chlSab2.chr7             135654682 1077 + 135778131  
i chlSab2.chr7             I 40 C 0
s calJac3.chr3             190760419 1135 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87943943  978 - 129401213  
i mm10.chr8                C 0 I 663
s canFam3.chr16             18199697 1050 -  59632846  
i canFam3.chr16            C 0 C 0

a score=45131.000000
s hg38.chr4_KI270925v1_alt    545213 13 +    555799 TGCCATGAGAGGT
s panTro4.chr7               2101684 13 - 161824586 TTCCATGAGAGGT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10718463 13 +  13794794 TTCCATGAGAGGT
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chr7b            114013073 13 + 115148730 TGCCATGAGAGGT
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183911636 13 + 184069350 TGCCATGAGAGGT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189305430 13 + 189454096 TGCCATGAGAGGT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178721656 13 + 178775436 TGCCATGAGAGGT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135655759 13 + 135778131 TGCCATGAGAGGT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190761554 13 - 190850796 TGCCATCAGAGGT
i calJac3.chr3             C 0 I 816
s canFam3.chr16             18200747 13 -  59632846 TGGTGTGAGAGAT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87944921 663 - 129401213 I

a score=430040.000000
s hg38.chr4_KI270925v1_alt    545226 155 +    555799 GAGGCTGAGAAGGTGGACAAGATCTAGGTCAatgtgttaagttcctactaaatg-------caaggctaggctctgcataaacagaaacaaataaggcaaacctactccttgcatctttagagcttgtggtctagcagAATTACTTCATGggtagaaaatca
s panTro4.chr7               2101697 155 - 161824586 GAGGCTGAGAAGGTGCACAAGATCTAGGTCAatgtgttaacttcctactaaatg-------caaggctaggctctgcataaacagaaacaaataaggcaaacctagtccttgtatctttagagtttgcagtctagcagAATTATTTCgtgggtagaaaatca
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10718476 155 +  13794794 GAGGCTGAGAAGGTGGACAATATCTAGGTCAatgtgttaagttcctactaaatg-------caaggctaggctctgcataaacagaaacaaataaggcaaaccttgtccttgcatctttagagcttgcagtctagcagAATTATTTCGTGGGTAGAAAATCA
i ponAbe2.chr9_random      C 0 I 188
s nomLeu3.chr7b            114013086 155 + 115148730 GAGGCTGAGAAGGTGGACAAGATCTAGGTCAACGTGTGAagttcctactaaatg-------caaggctaggctctgcataaacagaaataaataaggtaaacctagtccttgcacctttacagcttgtggtctagcagAATTATTTCgtgggtagaaaatca
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183911649 151 + 184069350 GAGGCTGAGAAGGTGGACAAGATCTAGGTCAatgtgttaaattcctactaaatg-------caaggccaggctctgcataaacag----aaataaggcaaacctagtccttgcatctttagagcttgcggtctagcagaATTACCTCATGggtagaaaatca
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189305443 151 + 189454096 GAGGCTGAGAAGGTGGACAAGATCTAGGTCAATGTGTTAAATTCCTACTAAATG-------CAAGGCCAGGCTCTGCATAAACAG----AAATAAGGCAAACCTAGTCCTTGCATCTTTAGAGCTTGCGGTCTAGCAGAATTACCTCATGggtagaaaatca
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178721669 151 + 178775436 GAGGCTGAGAAGGTGGACAAGATCTAGGTCAATGTGTTAAGTTCCTACTAAATG-------CAAGGCCAGGCTCtgcataaacag----aaataaggcaaacCTAGTCCTTGCATCTTTAGAGCTTGCGGTCTAGCAGAATTACCTCATGGGTAGAAAatca
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135655772 151 + 135778131 GAGGCTGAGAAGGTGGACCAGATCTAGGTCAatgtgttaagttcctactaaatg-------caaggccaggctctgcataaacag----aaataaggcaaacctagtccttgcatctttagagcttgcggtctagcagaATTACCTCATGggtagaaaatca
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             18200760 161 -  59632846 GAGGCTGAAAAAGGAGATAGAAGCT-GGTCAatgtgttaagtgcctactaggtagtgggccctgggctaggccctgggtaaacagcaataaataaagcatatctagtccctgtatccttagagcttgcagtcTCACAGAATTACCTTGTAGGTGGGAAATCA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87944921 663 - 129401213 I
e calJac3.chr3             190761567 816 - 190850796 I

a score=19181.000000
s hg38.chr4_KI270925v1_alt    545381 8 +    555799 ttaaagat
s panTro4.chr7               2101852 8 - 161824586 ttaaagat
i panTro4.chr7             C 0 C 0
s nomLeu3.chr7b            114013241 8 + 115148730 ttaaagat
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183911800 8 + 184069350 ttagagat
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189305594 8 + 189454096 ttagagat
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178721820 8 + 178775436 ttaaagat
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135655923 8 + 135778131 ttaaagat
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             18200921 8 -  59632846 TTAAAGAT
i canFam3.chr16            C 0 I 278
e mm10.chr8                 87944921 663 - 129401213 I
e calJac3.chr3             190761567 816 - 190850796 I
e ponAbe2.chr9_random       10718631 188 +  13794794 I

a score=157460.000000
s hg38.chr4_KI270925v1_alt    545389 63 +    555799 ttttaaatgaaggagagacatgatctaattgaaatttttgatgaacctctctgggtgtgccat
s panTro4.chr7               2101860 63 - 161824586 ttttaaacgaaggagagacatgatctaattgaaatttttgaagaacctctctgggtgtgccat
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10718819 63 +  13794794 ttttaaacgaaggagagacatgatctaattgaaatttttgaagaacctctctgggtgtgccat
i ponAbe2.chr9_random      I 188 C 0
s nomLeu3.chr7b            114013249 63 + 115148730 ttttaaatgaaggagagacatgatctaattgaaatttttgatgaacctctctgggtgtgccat
i nomLeu3.chr7b            C 0 C 0
s rheMac3.chr5             183911808 63 + 184069350 ttttaaacgaaggagagacatgatctaattgaaatttttgaagaacctctctgaatgtgccat
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189305602 63 + 189454096 ttttaaacgaaggagagacatgatctaattgaaatttttgaagaacctctctgaatgtgccat
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178721828 63 + 178775436 ttttaaacGAAGGAGAGACATGATCTAATTGAAATTTTTGAAGAACCTCTCTGAATGTGCCAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135655931 63 + 135778131 ttttaaatgaaggagagacatgatctaattgaaatttttgaagaacctctctgaatgtgccat
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87944921 663 - 129401213 I
e canFam3.chr16             18200929 278 -  59632846 I
e calJac3.chr3             190761567 816 - 190850796 I

a score=524865.000000
s hg38.chr4_KI270925v1_alt    545452 215 +    555799 agagaaggtattggagaggca-aaaagttggaaagaggagtatatgtttgcagaccaggtgaaa------catgcggatgacagaagtggataattttagcacatattttgaaggtgaaataacaggact-tggttgcaagttgtgatggtaggggggtggcaggaagaagaaagcatcaaggatgatgatgctttctggaagaagcaaatgggt-aaatggag
s panTro4.chr7               2101923 215 - 161824586 ggagaaggtattggagaggca-aaaagttggaaagaggagtatatgtttgcagatcaggtgaaa------gatgcggatgacagaagcagataattttaacacatattttgaaagtgaaataacagtact-tgtttgcaagttgtgatggtaggggggttgcaggaagaagaaagcatcaaggatgatgatgctttctggaagaagcaaatgggt-aaatggag
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10718882 215 +  13794794 agagaaggtattggacaggca-acaagttggaaagaggagtatatgtttgcagaccaggtgaaa------gatgcagatgacagaagcggataattttagcacatattttgaaggtgaaataacagtact-tggttccaagttgtgatggtaggggggttgcaggaagaagaaagtatcaaggatgatgatgctttctggaagaagcaaatgggt-aaatggag
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chr7b            114013312 216 + 115148730 agagaaggtattggagaggca-aaaagttggaaagaggagtgtacgtttgcagaccaggtgaaa------gatgcagatgacagaagcggataattttagcacatattttgaaggtgaaataacaggact-tggttgcaagttgtgatggtgggggggtggcaggaaggagaaagcatcaaggatgattatgctttctggaagaagtaaatggGTgaggtggag
i nomLeu3.chr7b            C 0 N 0
s rheMac3.chr5             183911871 214 + 184069350 agagaaggtattggagaggca-aaacgttggaaagaggagtatatgtttgcagaccaggtgaaa------gatggggatggcagaagtggattattttagcacatgctttgaaggggaaataacaggact-tggttgcaagttgtgatggta-gggggtggcaggaagaagacagcatcaaggatgatgatgctttctggaagaagcaaatgggt-aaatggag
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189305665 214 + 189454096 agagaaggtattggagaggca-aaacgttggaaagaggagtatatgtttgcagaccaggtgaaa------gagggggatgacagaagtggattattttagcacatgctttgaaggggaaataacaggact-tggttgcaagttgtgatggta-gggggtggcaggaagaagacagcatcaaggatgatgatgctttctggaagaagcaaatgggt-aaatggag
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178721891 214 + 178775436 AGAGAAGGTATTGGAGAGGCA-AAACGTTGGAAAGAGGAGTATATGTTTGCAGACCAGGTGAAA------GATGGGGATGACAGAAGTGGATTATTTTAGCACATACTTTGAAGGGGAAATAACAGGACT-TGGTTGCAAGTTGTGATGGTA-GGGGGTGGCAGGAAGAAGACAGCATCAAGGATGATGATGCTTTCTGGAAGAAGCAAATGGGT-AAATGGAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135655994 214 + 135778131 ggagaaggtattggaaaggca-aaacgttggaaagaggaatatatgtttgcagaccaggtgaaa------gatggggatgacagaagtggattattttagcacatactttgaaagggaaataacaggact-tggctgcaagttgtgatggta-gggggtggcaggaagaagacagcatcaaggatgGTGATGCTTTCTGGAAGAAGCAAATGGGT-AAATGGAG
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87945584 200 - 129401213 aaggaATATACTGAAGGAGCACAGAAGTAGGAA----GAGCTTACATTACTATATAGGGTGAAACGTAATGATGGAGAAAGCAGGGGTGGAAA---TTAG--------TTGGAGAC--AACAATAAGACTCTGGTTGCAG--TACGATGGCA-GAGGA--GCAATGGGAAGGAAGCATCAAGGACCCCCTTATTTAAT-GCAGAAGCAACTAGGT-AAACTGAA
i mm10.chr8                I 663 C 0
e canFam3.chr16             18200929 278 -  59632846 I
e calJac3.chr3             190761567 816 - 190850796 I

a score=683693.000000
s hg38.chr4_KI270925v1_alt    545667 269 +    555799 ataatttttacgaagaatggtaaggctgaagaagaaataaactaacaaaagggaaatgattgaggaagtggcatagatttgggggcagaactcaagagttttgaattctgattttaggaat-----gcctatgaaaatcccagtggagatttcaagatggcaggtgcacataatgttttggagcttgggaggagagctctgta-----------------ggagccatatgcatataaacagtatctaaagccataggaattaataaaaccttgtctagagtctgtgtagg
s panTro4.chr7               2102138 269 - 161824586 acgatttttataaacaatggtaaggctgaagaagaaataaactaacgaaagggaaatgattgaggaagtggcacagatgtgggggcagaactcaagagttttgaattctgattttaggaat-----gcctgtgaaaatcccagtggagatttcaagatggcaggtgcacataatgttttggagcttgggaggagaggtctgta-----------------ggagccatatgcatatcaatggtatctaaagccataggaattaataagaccttgtctagagtctgtgtagg
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10719097 269 +  13794794 ataatttttataaagaatgctaaggctgaagaagaaataaactaacaaaagggaaatgattgaggaagtggcatagacgtgggggcagaactcatgagttttgaattctgattttaggaat-----gcctgtgaaaatcccagtggagatttcaagatggcaggtgcacataatcttttggagcttgggaggagaggtctgta-----------------ggagccatatgcatataaatggtatctaaagccataggaattaataaaactttgtctagagtctgtgtagg
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chrUn_JH996241_1    503535 269 -    540987 ataatttttatgaagaatggtaaggctgaagaagaaataaactaacaaaagagaaatgattgaggaagtggcatagattttggggcagaactcaagagttttgaattctgattttaggaat-----ccctgtgaaaatcccagtggagatttcaagatggcaggtgcacgtaatgttttggagcttgggaggagaggtctgta-----------------ggatccatatgcagataaatggtatctaaagccataggaattaataaaacattttctagagactgtgtagg
i nomLeu3.chrUn_JH996241_1 N 0 C 0
s rheMac3.chr5             183912085 268 + 184069350 ataatttttatgaagaatggtaaggctgaagaagaaataaactaacaaaagggaaatgattgaggaagcaacatacatttgggggcagaactcaagagttgcgagttctgattttaggaat-----gcctgtgaaaattccggtggagattttaagacggcaggtgcacataatgttttggagcttgggaggaga-gtctgta-----------------ggagtcatatgcatataaatggtatctaaagccataggaattaataaaaccttgtctagagtctgtgtagg
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189305879 268 + 189454096 ataatttttatgaagaatggtaaggctgaagaagaaataaactaacaaaagggaaatgattgaggaagcaacatacatttgggggcagaactcaagagttgcgagttctgattttaggaat-----gcctgtgaaaattccggtggagatttcaagatggcaggtgcacataatgttttggagcttgggaggaga-gtctgta-----------------ggagtcatatgcatataaatggtatctaaagccataggaattaataaaaccttgtctagagtctgtgtagg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178722105 269 + 178775436 ATAATTTTTATGAAGAATGGTAaggctgaagaagaaataaactaacAAAAGGGAAATGATTGAGGAAGCAACATACATTTGGGGGCAGAACTCAAGAGTTGCGAGTTCTGATTTTAGGAAT-----GCCTGTGAAAATTCCAGTGGAGATTTCAAGACGGCAGGTGCATATAATGTTTTGGAGCTTGGGAGGAGAGGTCTGTA-----------------GGAGTCATATGCATATAAATGGTATCTAAAGCCATAGGAATTAATAAAACCTTGTCTAGAGTCTGTGTAGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135656208 269 + 135778131 ATAATTTTTAtgaagaatggtaaggctgaagaagaaataaactaacaaaagggaaatgactgaggaagcaacatacatttgggggcagaactcaagagttgcgagttctgattttaggaat-----gcctgtgaaaattccagtggagatttcaagacggcaggtgcacataatgatttggagcttgggaggagaggtctgta-----------------ggagtcatatgcatataaatggtatctaaaaccatagaaattgataaaaccttgtctggagtctgtgtagg
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87945784 278 - 129401213 GTGGATTCTATAAAGAATAAAAAGGCTGGAAAAGAAATA----ACTGGGAGAGCAA--------GAATAGACATAGATTTGAGACCA-AACTCAGTGCTGCTATGTTCTAGCACCCAGCATCTAGCATTTGTGAAAATCCAAGGTGAAATCTCAAGACATTACTCGGACACAGCATCTTGAAGCTGTTTTTGACCAATCTGTAGCACagttatacatttgggagtcatcaacatgtaactggtatttaaaatcattgcaattattaaaatattgtctagagtctatgtata
i mm10.chr8                C 0 I 83
e canFam3.chr16             18200929 278 -  59632846 I
e calJac3.chr3             190761567 816 - 190850796 I

a score=417387.000000
s hg38.chr4_KI270925v1_alt    545936 188 +    555799 cacgggcgtccaatcttttggcttccctgggctgcactgg---aagaagaattgtcttgggccacacataaaatatactaacattaacaatagctgatgagctaaaaaaaaaaaca-taaaaaaatctataatgcttgacgaatgtttacaaatttgtgttgggctgcattcaaagctgtcctgggccacac
s panTro4.chr7               2102407 189 - 161824586 caggggtgtccaatcttttggcttccct-ggctgcattcaaataagaagaattgtcttgggccacacataaaatatactaacattaacaatagatgatgagct-aaaaaaaaatca-taaaatatcttataatgcttgaagaatgtatacaaatttgtgtttggctgcattcaaagctgtcctgggccacac
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10719366 188 +  13794794 caggggtatccaatcttttggcttccct-ggctgcattcgaataagaagaattgtcttgggccacacagaaaatatactaacattaacaatagctgatgagct--acaaaaaatca-taaaatatcttataatgcttgaagaatatttacaaatttgtgtggggctgcattcaaagttgtcctgggccacac
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chrUn_JH996241_1    503804 188 -    540987 caggggtgtctaatcttttggcttccct-ggctgcattcgaagaagaagaattgtcttgggccacacataaaatatactaacattaacaatagctgatgagct--aaaaaaaatca-taaaaaatcttataatgcttgaagaatgtttacaaatttgtgttgggctgcattcaaagctgtcctgggccatac
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s rheMac3.chr5             183912353 190 + 184069350 cagaggtgtccaatcttttggcttccctgggttgcattggaagaagaagaattgtcttgggccacacataaaatatactaacattaacaatagctgatgcgct--ttaaaaaatcatttaaaaatcttgtagtgtttgaagaatgtttacaaatttgtgttgggctgcattcaaagctgtcctgggccacat
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189306147 190 + 189454096 cagaggtgtccaatcttttggcttccctgggttgcattggaagaagaagaattgtcttgggccacacataaaatatactaacattaacaatagctgatgcgct--ttaaaaaatcatttaaaaatcttatagtgtttgaagaatgtttacaaatttgtgttgggctgcattcaaagctgtcctgggccacat
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178722374 190 + 178775436 cagaggtgtccaatcttttggcttccctgggttgcattggaagaagaagaattgtcttgggccacacataaaatatactaacattaacaatagctgatgtgct--aaaaaaaatcatttaaaaatcttataatgTTTGAAGaatgtttacaaatttgtgttgggctgcattcaaagctgtcctgggccacat
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135656477 189 + 135778131 caggggtgtccaattttttggcttccctgggttgcattggaagaagaagaattgtcttgggccacacataaaatatactaacattaacaatagctgatgagct---aaaaaaatcattaaaaaatcttataatgcttgaagaatgtttacaaatttgtgttgggctgcattcaaagctgtcctgggccacat
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87946062  83 - 129401213 I
e canFam3.chr16             18200929 278 -  59632846 I
e calJac3.chr3             190761567 816 - 190850796 I

a score=435793.000000
s hg38.chr4_KI270925v1_alt    546124 186 +    555799 gtggcccaca--ggccacaggttggacaagcttagtatggaataagaacagaagaggacccaggatttaggaacttcaacatttaaagtttgggcaaagaggcaggagctgataaGAAAATAGTTCAAGCTAGAGGAAGAGATCAGGGGTCTACTCTACTGAATGTTTCTGAGACGCCATTGGACTTA
s panTro4.chr7               2102596 186 - 161824586 gtggcccaca--ggccatgggttggacaagcttagtatggaataagaacagaagaggacccaggatttaggaacttcaacatttaaagtttgggcaaagagggagaagctgataagaaaaTAGTTCAATCTAGAGGAAGAGGTTAGGGGTCTACTCTACCGAATGTTCCTGAGACCCCATTGGACTTA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10719554 186 +  13794794 gtggcccaca--ggccatgggttggacaagcttagtatggaataagaacagaagaggactcaggatttaggaacttcaacatttaaagtttgggcaaagagggggatgcagataaggaaaTAGTTCAAGCTCGATGAAGAGGTCAGAGGTCTACTCTACCGAATGTTCCTGAGACCCCATTGGACTTA
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chrUn_JH996241_1    503992 183 -    540987 ctggcccaca--ggccatggattggacaagcttagtatggaataagaacagaagaggacccaggatttaggaacttcgacatttacagtttgggcaaa-agggaggagctgataaGAAAATAGTTCAAGCTAGAGGAAGAGGTCAGGGGTCTACTCTACTGAATGTTCCTGAAA--CCATTggaatta
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s rheMac3.chr5             183912543 186 + 184069350 gtggcccaca--ggccacgggttggacaagcttagtatgaaataagaacagaagaggacccaggatttaggaacttcaacatttaaagtttgggcaaagagtttggagctgataagcaaatagttcaagctagaggaagaggtcagaggtCTACTCTACTGAATGTTCCTGAGACCCCACTGGACTTA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189306337 186 + 189454096 gtggcccaca--ggccacgggttggacaagcttagtatgaaataagaacagaagaggacccaggatttaggaacttcaacatttaaagtttgggcaaagagTTTGGAGCTGATAAGCAAATAGTTCAAGCTAGAGGAAGAGGTCAGAGGTCTACTCTACTGAATGTTCCTGAGACCCCACTGGACTTA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178722564 186 + 178775436 gtggcccaca--ggccacgggttggacaagcttaGTATGAAATAAGAACAGAAGAGGACCCAGGATTTAGGAACTTCAACATTTAAAGTTTGGGCAAAGAGTTTGGAGCTGATAAGCAAATAGTTCAAGCTAGAGGAAGAGGTCAGAGGTCTACTCTACTGAATGTTCCTGAGACCCCACTGgactta
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135656666 186 + 135778131 gtggcccaca--ggccacaggttgtacaagcttagtatggaataagaacagaagaggacccaggatttaggaacttcaacatttaaagtttgggcaaagagtttggagctgataagaaaattgttcaagctagaggaagaggtcagaggtCTACTCTACTGAATGTTCCTGAGACCCCACTGGAATTA
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87946145 134 - 129401213 GTGGCTAACATTAGCCACAGGAAGGGTAA----AAAATACACCACATAGGTGGGAAGACCC------TACCACCACCACCAGATAAA--------------------------------------------AGAGGAGAAGCTGTCAACTCTATTATACTTAATGTTTCTGCCAGGTCATTGGTCTCA
i mm10.chr8                I 83 I 409
e canFam3.chr16             18200929 278 -  59632846 I
e calJac3.chr3             190761567 816 - 190850796 I

a score=379687.000000
s hg38.chr4_KI270925v1_alt    546310 166 +    555799 TATattacataatatgtacaatatatgttacttgggtgatggataccctaatagctttgaactgaccactatgcacggaacaaaactgcacctgtatcccgtaaattttatataaacaaaaGTaaataaatagaaggcagg----aagggagaaggagaaggaaggaagg
s panTro4.chr7               2102782 165 - 161824586 TATattacataatatgtacaatatatgttactttggtgctggataccctaatagctttgaactgaccactatgcatggaacaaaattgcacatgtatcccataaattttatataaacaaaaGTAAATAAATAGaaggaagg-----agaaagagagagaaggaaggaagg
i panTro4.chr7             C 0 I 171
s ponAbe2.chr9_random       10719740 164 +  13794794 TATattacataatatgtacaatatatgttacttgggtgatggataccctaatagctttgaactgaccactatgcatggaacaaaattgcacatgtatcccacaaattttatataaacaaaaGTAAATAAATATAAGGAAGG------GAgaaagagagaaggaaggaagg
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chrUn_JH996241_1    504175 170 -    540987 tatattatataatatgtacaatatatgttacttgggcgatggataccctaatagctttgaactgaccactatccatggaacaaaactgcacatgtatcccgttaattttatataaacaaaaGTaaataaatagaaggaagaaaggaagggataaagagagagaaggaagg
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s rheMac3.chr5             183912729 166 + 184069350 TATattacataatatgtacaatatatgttacttgggtgatggataccctaatagctttgaactgaccactctgcatggaacaaaattgcacctgtatcccataagttttatataaacaaaaGTAAATAAATAgaaggaagg----aagagagaaagagagggaaggaagg
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189306523 166 + 189454096 TATattacataatatgtacaatatatgttacttgggtgatggataccctaatagctttgaactgaccactctgcatggaacaaaattgcacctgtatcccataagttttatataaacaaaaGTAAATAAATAgaaggaagg----aagagagaaagagagggaaggaagg
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178722750 166 + 178775436 tatattacataatatgtacaatatatgttacttgggtgatggataccctaataGCTTTGAACTGACCACTCTGCATGGAACAAAATTGCAcctgtatcccataagttttatataaacaaaagtaaataaatagaagaaagg----aagagagaaagagagggaaggaagg
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135656852 158 + 135778131 TATATTACATAATATGTATAATATATGTtacttgggtggtggataccctaatagctttgaactgaccactctgcatggaacaaaattgcacctgtatcccataaatTTTATATAAACAAAAGTAAATA--------gaagg----aagagagaaagagagggaaggaagg
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87946279 409 - 129401213 I
e canFam3.chr16             18200929 278 -  59632846 I
e calJac3.chr3             190761567 816 - 190850796 I

a score=4485.000000
s hg38.chr4_KI270925v1_alt    546476 3 +    555799 aag
s ponAbe2.chr9_random       10719904 3 +  13794794 aag
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chrUn_JH996241_1    504345 3 -    540987 aag
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s rheMac3.chr5             183912895 3 + 184069350 gag
i rheMac3.chr5             C 0 I 3
s macFas5.chr5             189306689 3 + 189454096 gag
i macFas5.chr5             C 0 I 3
s papAnu2.chr5             178722916 3 + 178775436 gag
i papAnu2.chr5             C 0 I 3
s chlSab2.chr7             135657010 3 + 135778131 aag
i chlSab2.chr7             C 0 I 78
e mm10.chr8                 87946279 409 - 129401213 I
e canFam3.chr16             18200929 278 -  59632846 I
e calJac3.chr3             190761567 816 - 190850796 I
e panTro4.chr7               2102947 171 - 161824586 I

a score=2865.000000
s hg38.chr4_KI270925v1_alt    546479 2 +    555799 ga
s ponAbe2.chr9_random       10719907 2 +  13794794 ga
i ponAbe2.chr9_random      C 0 I 153
s nomLeu3.chrUn_JH996241_1    504348 2 -    540987 ga
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s rheMac3.chr5             183912901 2 + 184069350 ga
i rheMac3.chr5             I 3 C 0
s macFas5.chr5             189306695 2 + 189454096 ga
i macFas5.chr5             I 3 C 0
s papAnu2.chr5             178722922 2 + 178775436 ga
i papAnu2.chr5             I 3 C 0
e mm10.chr8                 87946279 409 - 129401213 I
e canFam3.chr16             18200929 278 -  59632846 I
e calJac3.chr3             190761567 816 - 190850796 I
e chlSab2.chr7             135657013 78 + 135778131 I
e panTro4.chr7               2102947 171 - 161824586 I

a score=30490.000000
s hg38.chr4_KI270925v1_alt    546481 50 +    555799 t--ggaaggaaggaaagaaggaaggaa--gaaaggaaggaaggaaagaaagaag
s nomLeu3.chrUn_JH996241_1    504350 50 -    540987 a--ggaaggaaggaaagaaggaaagga--tagcgaggaaaggaaaggaaagaag
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s rheMac3.chr5             183912903 52 + 184069350 g--ggaaggaaggaagaaagaaaggaaaggaagggaaggaaggaaagaaggaag
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189306697 52 + 189454096 g--ggaaggaaggaagaaagaaaggaaaggaagggaaggaaggaaagaaggaag
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178722924 54 + 178775436 gaaggaaggaaggaagacagaaaggaaaggaagggaaggaaggaaggaaagaag
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87946279 409 - 129401213 I
e canFam3.chr16             18200929 278 -  59632846 I
e calJac3.chr3             190761567 816 - 190850796 I
e chlSab2.chr7             135657013 78 + 135778131 I
e ponAbe2.chr9_random       10719909 153 +  13794794 I
e panTro4.chr7               2102947 171 - 161824586 I

a score=1146.000000
s hg38.chr4_KI270925v1_alt    546531 2 +    555799 ga
s nomLeu3.chrUn_JH996241_1    504400 2 -    540987 ga
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s rheMac3.chr5             183912955 2 + 184069350 ga
i rheMac3.chr5             C 0 I 42
s papAnu2.chr5             178722978 2 + 178775436 ga
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87946279 409 - 129401213 I
e canFam3.chr16             18200929 278 -  59632846 I
e calJac3.chr3             190761567 816 - 190850796 I
e chlSab2.chr7             135657013 78 + 135778131 I
e macFas5.chr5             189306749 0 + 189454096 C
e ponAbe2.chr9_random       10719909 153 +  13794794 I
e panTro4.chr7               2102947 171 - 161824586 I

a score=7826.000000
s hg38.chr4_KI270925v1_alt    546533 45 +    555799 agggagagcgaggaaaggaaaggaaagggaagggaaggaaagaag
s nomLeu3.chrUn_JH996241_1    504402 45 -    540987 aaggagagcgaggaaaggaaaggaaaggaaagggaaggaaagaag
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s papAnu2.chr5             178722980 42 + 178775436 -aggagaaagaaggaaggaa--ggaagaaaaagaaagaaagaaag
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87946279 409 - 129401213 I
e canFam3.chr16             18200929 278 -  59632846 I
e calJac3.chr3             190761567 816 - 190850796 I
e chlSab2.chr7             135657013 78 + 135778131 I
e macFas5.chr5             189306749  0 + 189454096 C
e rheMac3.chr5             183912957 42 + 184069350 I
e ponAbe2.chr9_random       10719909 153 +  13794794 I
e panTro4.chr7               2102947 171 - 161824586 I

a score=846.000000
s hg38.chr4_KI270925v1_alt    546578 19 +    555799 gaagggagagtgaggaaag
s papAnu2.chr5             178723022 19 + 178775436 agagagagagagagggaga
i papAnu2.chr5             C 0 C 0
e mm10.chr8                 87946279 409 - 129401213 I
e canFam3.chr16             18200929 278 -  59632846 I
e calJac3.chr3             190761567 816 - 190850796 I
e chlSab2.chr7             135657013 78 + 135778131 I
e macFas5.chr5             189306749  0 + 189454096 C
e rheMac3.chr5             183912957 42 + 184069350 I
e nomLeu3.chrUn_JH996241_1    504447  0 -    540987 C
e ponAbe2.chr9_random       10719909 153 +  13794794 I
e panTro4.chr7               2102947 171 - 161824586 I

a score=0.000000
s hg38.chr4_KI270925v1_alt    546597 151 +    555799 ggaaggaaagaaggaagggagagcgaggaaaggaaaggaaagaaaggaaaggaaaggaaaataaatgaaagggagggaaggaaggaaggaagaaaggaaggaaggaagggggaagagagagaaagaaagagagagaaagaaagaaagaaag
e mm10.chr8                 87946279 409 - 129401213 I
e canFam3.chr16             18200929 278 -  59632846 I
e calJac3.chr3             190761567 816 - 190850796 I
e chlSab2.chr7             135657013  78 + 135778131 I
e papAnu2.chr5             178723041   0 + 178775436 C
e macFas5.chr5             189306749   0 + 189454096 C
e rheMac3.chr5             183912957  42 + 184069350 I
e nomLeu3.chrUn_JH996241_1    504447   0 -    540987 C
e ponAbe2.chr9_random       10719909 153 +  13794794 I
e panTro4.chr7               2102947 171 - 161824586 I

a score=1801.000000
s hg38.chr4_KI270925v1_alt    546748 19 +    555799 agaaaggaaagaaggaagg
s chlSab2.chr7             135657091 19 + 135778131 agaaaggaaagaaggaagg
i chlSab2.chr7             I 78 C 0
e mm10.chr8                 87946279 409 - 129401213 I
e canFam3.chr16             18200929 278 -  59632846 I
e calJac3.chr3             190761567 816 - 190850796 I
e papAnu2.chr5             178723041  0 + 178775436 C
e macFas5.chr5             189306749  0 + 189454096 C
e rheMac3.chr5             183912957 42 + 184069350 I
e nomLeu3.chrUn_JH996241_1    504447  0 -    540987 C
e ponAbe2.chr9_random       10719909 153 +  13794794 I
e panTro4.chr7               2102947 171 - 161824586 I

a score=4213.000000
s hg38.chr4_KI270925v1_alt    546767 34 +    555799 aaggaaagaaagagaaagaaagaaaa--gaaagaaa
s chlSab2.chr7             135657110 36 + 135778131 aaggaaagaaggaaggagaaagaaaaaaggaaggaa
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87946688 36 - 129401213 AACAAAATGAagaagaaggaggaggaggaggaggaa
i mm10.chr8                I 409 C 0
e canFam3.chr16             18200929 278 -  59632846 I
e calJac3.chr3             190761567 816 - 190850796 I
e papAnu2.chr5             178723041  0 + 178775436 C
e macFas5.chr5             189306749  0 + 189454096 C
e rheMac3.chr5             183912957 42 + 184069350 I
e nomLeu3.chrUn_JH996241_1    504447  0 -    540987 C
e ponAbe2.chr9_random       10719909 153 +  13794794 I
e panTro4.chr7               2102947 171 - 161824586 I

a score=4211.000000
s hg38.chr4_KI270925v1_alt    546801 20 +    555799 ggaaag-aaaga-------aagaaaaga
s nomLeu3.chrUn_JH996241_1    504447 21 -    540987 ggagagcgagga-------aaggaaagg
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s chlSab2.chr7             135657146 27 + 135778131 ggaaag-aaggagggaaagaaggaaaga
i chlSab2.chr7             C 0 I 1
s mm10.chr8                 87946724 20 - 129401213 gaagag-aaaga-------agaggagga
i mm10.chr8                C 0 C 0
e canFam3.chr16             18200929 278 -  59632846 I
e calJac3.chr3             190761567 816 - 190850796 I
e papAnu2.chr5             178723041  0 + 178775436 C
e macFas5.chr5             189306749  0 + 189454096 C
e rheMac3.chr5             183912957 42 + 184069350 I
e ponAbe2.chr9_random       10719909 153 +  13794794 I
e panTro4.chr7               2102947 171 - 161824586 I

a score=5207.000000
s hg38.chr4_KI270925v1_alt    546821 9 +    555799 aaagaaaga
s ponAbe2.chr9_random       10720062 9 +  13794794 aaagaaaga
i ponAbe2.chr9_random      I 153 C 0
s nomLeu3.chrUn_JH996241_1    504468 9 -    540987 gagggaagg
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s chlSab2.chr7             135657174 9 + 135778131 aaagaaaga
i chlSab2.chr7             I 1 C 0
s mm10.chr8                 87946744 9 - 129401213 agagaaggg
i mm10.chr8                C 0 C 0
e canFam3.chr16             18200929 278 -  59632846 I
e calJac3.chr3             190761567 816 - 190850796 I
e papAnu2.chr5             178723041 0 + 178775436 C
e macFas5.chr5             189306749 0 + 189454096 C
e rheMac3.chr5             183912957 42 + 184069350 I
e panTro4.chr7               2102947 171 - 161824586 I

a score=14290.000000
s hg38.chr4_KI270925v1_alt    546830 18 +    555799 -aagaaagaaagaaagaaa
s panTro4.chr7               2103118 18 - 161824586 -aagaaggaaggaaagaaa
i panTro4.chr7             I 171 C 0
s ponAbe2.chr9_random       10720071 18 +  13794794 -aagaaagaaagaaagaaa
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chrUn_JH996241_1    504477 18 -    540987 -aaggaaggaagggagaaa
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s chlSab2.chr7             135657183 16 + 135778131 -aagaaag--agaaagaaa
i chlSab2.chr7             C 0 I 6
s mm10.chr8                 87946753 19 - 129401213 gaggaagaggaggaagagg
i mm10.chr8                C 0 C 0
e canFam3.chr16             18200929 278 -  59632846 I
e calJac3.chr3             190761567 816 - 190850796 I
e papAnu2.chr5             178723041  0 + 178775436 C
e macFas5.chr5             189306749  0 + 189454096 C
e rheMac3.chr5             183912957 42 + 184069350 I

a score=42227.000000
s hg38.chr4_KI270925v1_alt    546848 57 +    555799 gag---aaagaaaaagaaagaaagaaagaaagaa-agagaaagaaagggagaaagaGGAAT
s panTro4.chr7               2103136 55 - 161824586 gaa---agaaagaaagaaagaaagaaagaaagaa-aga--aagaaagaaagaaagaGGAAT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10720089 58 +  13794794 gaa---agaaagaaagaaacaaagaaagaaagaataaagaaagaaagagagaaagaGGAAT
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chrUn_JH996241_1    504495 60 -    540987 gaggatagaaagagagagaaagaaagagaaagaa-agaaagagaaagagagaaagaGGAAT
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s macFas5.chr5             189306749 48 + 189454096 -------------gagaaagaaggaaggaaggaagaaaaagagagagagagagggagggag
i macFas5.chr5             C 0 I 2
s chlSab2.chr7             135657205 52 + 135778131 -------aagaaagagaaagagagaaagaaaga--aagaagaaagaaagaaagggagggag
i chlSab2.chr7             I 6 C 0
s mm10.chr8                 87946772 57 - 129401213 ---aggagggggatgaaaaggaggagggggagga-agaggaggagggggaggaagaggagg
i mm10.chr8                C 0 C 0
e canFam3.chr16             18200929 278 -  59632846 I
e calJac3.chr3             190761567 816 - 190850796 I
e papAnu2.chr5             178723041  0 + 178775436 C
e rheMac3.chr5             183912957 42 + 184069350 I

a score=1911.000000
s hg38.chr4_KI270925v1_alt    546905 1 +    555799 A
s panTro4.chr7               2103191 1 - 161824586 A
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10720147 1 +  13794794 A
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chrUn_JH996241_1    504555 1 -    540987 A
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s rheMac3.chr5             183912999 1 + 184069350 A
i rheMac3.chr5             I 42 C 0
s chlSab2.chr7             135657257 1 + 135778131 A
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87946829 1 - 129401213 a
i mm10.chr8                C 0 C 0
e canFam3.chr16             18200929 278 -  59632846 I
e calJac3.chr3             190761567 816 - 190850796 I
e papAnu2.chr5             178723041 0 + 178775436 C
e macFas5.chr5             189306797 2 + 189454096 I

a score=2800.000000
s hg38.chr4_KI270925v1_alt    546906 1 +    555799 G
s panTro4.chr7               2103192 1 - 161824586 G
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10720148 1 +  13794794 G
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chrUn_JH996241_1    504556 1 -    540987 G
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s rheMac3.chr5             183913000 1 + 184069350 G
i rheMac3.chr5             C 0 C 0
s papAnu2.chr5             178723041 1 + 178775436 g
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135657258 1 + 135778131 G
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87946830 1 - 129401213 g
i mm10.chr8                C 0 I 302
e canFam3.chr16             18200929 278 -  59632846 I
e calJac3.chr3             190761567 816 - 190850796 I
e macFas5.chr5             189306797 2 + 189454096 I

a score=254682.000000
s hg38.chr4_KI270925v1_alt    546907 109 +    555799 TGTTCATGATGTTTATGAATCACCAATTCTGGGGGCActgaattgtgtcccccaagattcctatgttgaagagctgatccccactgcctcagaggggactgatttagag
s panTro4.chr7               2103193 108 - 161824586 TGTTCATGATGTTTAGGAATCACCAATTCTGGGGGTgctgaattgtgtccccccagattcctatgttgaagggctgatccccactgcctcagaggg-actgatttagag
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10720149 109 +  13794794 TGTTCATGATGTTTAGGAATCACCAATTCTGGGGGCgctgaattgtgtctccccagattcctatgttgaagagctgatccccactgcctcagaggggactgatttagag
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chrUn_JH996241_1    504557 108 -    540987 TGTTCGTGATGTTTAGGAATCACCAATTCTGGGGGTgctgaattgtgtccccc-agattactatgttaaagagctgatccccactgccccagaggggactgatttagag
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s rheMac3.chr5             183913001 109 + 184069350 TATTCGTGAAGTTTATGAATCACCAATTCTGGGGGCActaaattgtgtcccctcagattcctgtgttgaagaactgatccccactgcctcagaggggactgatttagag
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189306799 109 + 189454096 TATTCGTGAAGTTTATGAATCACCAATTCTGGGGGCActaaattgtgtcccctcagattcctgtgttgaagaactgatccccactgcctcagaggggactgatttagag
i macFas5.chr5             I 2 C 0
s papAnu2.chr5             178723042 109 + 178775436 tatTTGTGAAGTTTATGAATCACCAATTCTGGGGGCACTAAATTGTGTCCCCTCAGATTCCTATGTTGAAGAACTGATCCCCACTGCCTCAGAGGGGACTGATTTAGAG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135657259 109 + 135778131 TATTCGTGAAGTTTATGAATCACCAATTCTGGGGGCActaaattgtgtccccccagattcctatgttgaagaactgatccccactgcctcagaggggactgatttagag
i chlSab2.chr7             C 0 C 0
e mm10.chr8                 87946831 302 - 129401213 I
e canFam3.chr16             18200929 278 -  59632846 I
e calJac3.chr3             190761567 816 - 190850796 I

a score=655446.000000
s hg38.chr4_KI270925v1_alt    547016 249 +    555799 aaggccttcaaagaggtaagtgaggtcaaatgaagccgtatgggtggaccctaaaccaatatggcaggtgtccatctaaaaa---gagattgagacacaggcaa------cacagcctgaggacacagcaggaagggagccgtctg---caaggcagcagttctcagaagaaggcaaacctgctgacat-tccatcctggatttccagtcttcagagctgtgagaagataaa---------------ccactcaatctgtggcagcttgtgatggaa
s panTro4.chr7               2103301 248 - 161824586 aaggcattcaaagaggtaagtgaggtcaaatgaagccatatgggtggaccctaaaccaatatggcaggtgtccatctaaaaa---gagattgagacacaggcaa------cacagcctgaggacatagcaagaagggaggcatctg---caaggcagcagttctcagaagaaggcaaacctgctgacat-tccttcctggatttccagtcttcagagct-tgagaagataaa---------------ccactcaatctgtggcagcttgtgatggaa
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10720258 249 +  13794794 aaggcattcaaagaggtaagtgaagtcaaatgaagccatatgggtggaccctaaaacaatatggcagctatccatctaaaaa---gagattgagacacaggcaa------cacagcctgaggacacagcaggaagggaggtatctg---caaggcagcagatctcagaagaaggaaaacctgctgacat-tccatcctggatttccagtcttcagagctgtgagaagataaa---------------ccactcaatctgtggcagcttgtgatggaa
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chrUn_JH996241_1    504665 249 -    540987 aaggccttcaaagaggtaaatgaggtcaaatgaagccatatgggtggaccctaaaccaatatggcaggtgtccatctaaaaa---gagattgagacacaggcaa------cacagcctgaggacacagaaggaagggagccatctg---caaggctgcagttctcagaagaaggcaaacctgctgacat-tccttcctggatttccagtcttcagagctgtgagaagataaa---------------caactgaatctgtggcagtttgtgatggaa
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s rheMac3.chr5             183913110 246 + 184069350 aaggtcttcaaaaaggtaagtgaggtcaaataaagccatatgggtgg---ctaaaccaatatggcaggtgtccatctaaaaa---gagattgagacaaaggcaa------cacagcctgaggacacagcaggaagggagccatctg---caaggcagcagttctcagaagaaggcaaacctgctgacat-tccatcctggatttccagtcttcagagctgtgagaagataaa---------------ccactcaacctgtggcagcttgtgagggaa
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189306908 246 + 189454096 aaggtcttcaaaaaggtaagtgaggtcaaataaagccatatgggtgg---ctaaaccaatatggcaggtgtccatctaaaaa---gagattgagacaaaggcaa------cacagcctgaggacacagcaggaagggagccatctg---caaggcagcagttctcagaagaaggcaaacctgctgacat-tccatcctggatttccagtcttcagagctgtgagaagataaa---------------ccactcaacctgtggcagcttgtgagggaa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178723151 246 + 178775436 AAGGTCTTCAAAAAGGTAAGTGAGGTCAAATAAAGCCATATGGGTGG---CTAAACCAATATGGCAGGTGTCCATCTAAAAA---GAGATTGAGACAAAGGCAA------CACAGcctgaggacacagcaggaagggaGCCATCTG---CAAGGCAGCAGTTCTCAGAAGAAGGCAAACCTGCTGACAT-TCCATCCTGGATTTCCAGTcttcagagctgtgagaagataAA---------------CCACTCAACCTGTGGCAGCTTGTGAGGGAA
i papAnu2.chr5             C 0 I 321
s chlSab2.chr7             135657368 246 + 135778131 aaggccttcaaaaaggtaagtgaggtcaaataaagccatatggccgg---ctaaaccaatatggcaggtgtccatctaaaaa---gagattgatacaaaggcaa------cacaacctgaggacacagcaggaagggggccatctg---caaggcagtagttctcagaagaaggcaaacctgctgacat-tccatcctggatttccagtcttcagagctgtgagaagataaa---------------ccactcaacctgtggcagcttgtgagggaa
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             18201207 275 -  59632846 agggtctttacacaggtaagtaagactatattaggtcatgtagggagaccct-aatcaacatgactggtgtcctcataagaagaggagattaggacacaaacagagggataacaatatgaagacacagtgagaagtg-gccatctatgccaaggaaaagagcctccaaggaaaccaaacctgaagacatcttgatcttggacttccagcccccaaaactgtgagaaaataaatttctattgtttaagccactcagtctggggtattttgttacacca
i canFam3.chr16            I 278 C 0
e mm10.chr8                 87946831 302 - 129401213 I
e calJac3.chr3             190761567 816 - 190850796 I

a score=99876.000000
s hg38.chr4_KI270925v1_alt    547265 40 +    555799 gcccctagcaCTCTTATAtggtgaccttagcacaagcagt
s panTro4.chr7               2103549 40 - 161824586 gcccctagcaCTCTTATAtggtgaccttagcacaagcagt
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10720507 40 +  13794794 gcccctagtacacttatatggtgaccttagcacaaccagt
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chrUn_JH996241_1    504914 40 -    540987 gcccCCAGCACTCTTATAtggtgaccttaggacaagaagt
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s rheMac3.chr5             183913356 40 + 184069350 gcccctagcagtcttatacggtgaccttagcacaagcagt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189307154 40 + 189454096 gcccctagcagtcttatacggtgaccttagcacaagcagt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178723718 40 + 178775436 GTCCTCAATAGTCTTATACGGTGAGCTTAGCGCAAGCAGT
i papAnu2.chr5             I 321 C 0
s chlSab2.chr7             135657614 40 + 135778131 gcccctagcagtcttatacagtgaccttagtgcaagcagt
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             18201482 39 -  59632846 -gtcctagcaaactaatacagtgaccttagcaaaagtagc
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87946831 302 - 129401213 I
e calJac3.chr3             190761567 816 - 190850796 I

a score=476034.000000
s hg38.chr4_KI270925v1_alt    547305 169 +    555799 ttaacaggcttggtgaaagtgaaagccaaactgacctgaat-aaagagtgaaaggaaaaggagcaaaaggagacagtaagtgtggaaaatccttgaggaaaat-ttgccaagaaaggagg---a---gatggct--------tgatagctag-------aaagacatagagagtcaaaggtaaggtttctcc
s panTro4.chr7               2103589 168 - 161824586 ttcataggcttgatgaaagtgaaagccaaactgacctgaat-aaagagtgaaaggaaaatgagcaaaaggagatagtaagtgtggaaaatacttgagaaaaat-ttgccaagaaaggagg---a---gatgact--------tgatagctag-------aaagacacacagagtcaaagttaag-tttctcc
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10720547 163 +  13794794 ttcacaggcttggtgaaagtgaaagccaaactgacctgaat-aaagagtgaaaggaaaatgagcaaaaggagatagtaagtgtggaaaatccttgagaaaaac-ttgccaagaaatgagg---a---ggtggct--------tgatagctag-------aaagacata------caaagttaaggttcctcc
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chrUn_JH996241_1    504954 167 -    540987 ttaataggcttggtgaaagtgaaagccaaactgacctgaat-aaagagtgaagggaaaatgagcaaaacgagatagtaagtgtggaaaattcctgaggaaaat-tttctaagaaaggagg---a---gatggct--------tgatagctag-------aaagacaca--cagtcaaagttaaggtttctcc
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s rheMac3.chr5             183913396 169 + 184069350 ctaataggcttggtgaaagtgaaagccaaactgacttgaat-aaagagtgaaaggaaaatgagcaagaggagacagtaagtgtggaaaatccttgaggaatat-ttgccaagaaaggagg---a---gatggct--------tgatagctag-------aaagacacacagagtcaaaggtaaggtttctcc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189307194 169 + 189454096 ctaataggcttggtgaaagtgaaaaccaaactgacttgaat-aaagagtgaaaggaaaatgagcaagaggagacagtaagtgtggaaaatccttgaggaatat-ttgccaagaaaggagg---a---gatggct--------tgatagctag-------aaagacacacagagtcaaaggtaaggtttctcc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178723758 169 + 178775436 CTAATAGGCTTGGTGAAAGTGAAAGCCAAACTGACTTGAAT-AAAGAGTGAAAGGAAAATGAGCAAGAGGAGACAGTAAGTATGGAAAATCCTTGAGGAAAAT-TTGCCAAGAAAGGAGG---A---GATGGCT--------TGATAGCTAG-------AAAGACACACAGAGTCAAAGGTAAGGTTTCTCC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135657654 167 + 135778131 ctaataggcttggtgaaagtgaaagccaaattgacctgaat-aaagagtgaaaggaaaatgagcacgaggaaacagtaag--tggaaaatccttgaggaaaat-ttgccaagaaaggagg---a---gatggct--------tgataactag-------aaagacacacacagtcaaaggtaaggtttctcc
i chlSab2.chr7             C 0 C 0
s mm10.chr8                 87947133 180 - 129401213 TTAATGGTCTTAGTCGAAGTGGGAATCATCTTGTCCCGAG---------GAAGGGGAAATGAGAGTAAAGACGTAGTGAGTGCAGAAAACTCCTGAGGGAGACGTGGCCATGAAAGAAGGAACA---GATAGGTGATGGAGGTGTTAGGTAGATGATGAAGAGGTTTACAGAACTGTGGGAAGAGTTTCCCC
i mm10.chr8                I 302 C 0
s canFam3.chr16             18201521 173 -  59632846 gcaatggacttggtgaaagtgaaagccaagttggcctggataaaagaatgaaaggaaaatgaggaagggaaggtagtaaaagtataatattcttgaggaacct-ttggcatggagggaga---ggatgatggct--------tggtagcaag-------aaagacatgcagagtcaaaggaagggtctttcc
i canFam3.chr16            C 0 C 0
e calJac3.chr3             190761567 816 - 190850796 I

a score=1842249.000000
s hg38.chr4_KI270925v1_alt    547474 534 +    555799  
s panTro4.chr7               2103757 540 - 161824586  
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10720710 531 +  13794794  
i ponAbe2.chr9_random      C 0 I 789
s nomLeu3.chrUn_JH996241_1    505121 532 -    540987  
i nomLeu3.chrUn_JH996241_1 C 0 I 7
s rheMac3.chr5             183913565 534 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189307363 536 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178723927 534 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135657821 520 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190762383 538 - 190850796  
i calJac3.chr3             I 816 C 0
s mm10.chr8                 87947313 511 - 129401213  
i mm10.chr8                C 0 I 7
s canFam3.chr16             18201694 553 -  59632846  
i canFam3.chr16            C 0 C 0

a score=3358316.000000
s hg38.chr4_KI270925v1_alt    548008 1126 +    555799  
s panTro4.chr7               2104297 1106 - 161824586  
i panTro4.chr7             C 0 C 0
s nomLeu3.chrUn_JH996241_1    505660 1126 -    540987  
i nomLeu3.chrUn_JH996241_1 I 7 C 0
s rheMac3.chr5             183914099 1129 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189307899 1129 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178724461 1129 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135658341 1126 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190762921 1204 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87947831 1276 - 129401213  
i mm10.chr8                I 7 I 1662
s canFam3.chr16             18202247 1154 -  59632846  
i canFam3.chr16            C 0 C 0
e ponAbe2.chr9_random       10721241  789 +  13794794 I

a score=177901.000000
s hg38.chr4_KI270925v1_alt    549134 67 +    555799 CCTGTGTGTCTGTTTCCCTTTGAACTAC---ACAAACTAACTAATTTGGTGAACCCATTAAGTGAACTTC
s panTro4.chr7               2105403 67 - 161824586 CCTGTGTGTCTGTTTCCCTTTGAACTAC---ACAAACTAACTAATTTGGTGAACCTATTAAGTGGACTTC
i panTro4.chr7             C 0 C 0
s nomLeu3.chrUn_JH996241_1    506786 67 -    540987 CCTGTGTGTCTGTTTCCCTTTGAACTAC---ACAAACTAACTAATTTGGTGGACCGATTAAGTGAACGTC
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s rheMac3.chr5             183915228 67 + 184069350 CCTGTGTATCTGTTTCCCTTTGAACTAC---ACACACTAACTAATTTGGTGAACCTATTGAGTGAACTTC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189309028 67 + 189454096 CCTGTGTATCTGTTTCCCTTTGAACTAC---ACACACTAACTAATTTGGTGAACCTATTGAGTGAACTTC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178725590 67 + 178775436 CCTGTGTATCTGTTTCCCTTTGAGCTAC---ACACACTAACTAATTTGGTGAACCTATTGAGTGAACTTC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135659467 67 + 135778131 CCTGTGTGTCTGTTTCCCTTTGAACTAC---ACACACTAACTAATTTGGTGAACCTATTGAGTGAACTTC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190764125 67 - 190850796 CCTGTGTGTCTGTTTCCCTTTGAACTAT---ACAAACTAACTAATTTGGTGAAACTATTAAGTGAACTTC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18203401 68 -  59632846 --GCAGAGTCTGTTTCCCTTTTGAGTATATGACGAATGAAAGGATTTGGTAAGTCTGTTAGGTGAACTTC
i canFam3.chr16            C 0 I 612
e mm10.chr8                 87949107 1662 - 129401213 I
e ponAbe2.chr9_random       10721241 789 +  13794794 I

a score=2548.000000
s hg38.chr4_KI270925v1_alt    549201 1 +    555799 T
s panTro4.chr7               2105470 1 - 161824586 T
i panTro4.chr7             C 0 C 0
s nomLeu3.chrUn_JH996241_1    506853 1 -    540987 T
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s rheMac3.chr5             183915295 1 + 184069350 T
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189309095 1 + 189454096 T
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178725657 1 + 178775436 T
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135659534 1 + 135778131 T
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190764192 1 - 190850796 T
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87949107 1662 - 129401213 I
e canFam3.chr16             18203469 612 -  59632846 I
e ponAbe2.chr9_random       10721241 789 +  13794794 I

a score=310413.000000
s hg38.chr4_KI270925v1_alt    549202 127 +    555799 TTATACTCATGGTCTAGAGTGCATTGAACGCTAAAGGGTTTGCTAGAGATTGTCAAAATCAATTCTGTCTTCTTCCAACTGGACCAAGGCTTCTTTGAGTTAACAAAA--CTGAGAAATCTGAGTTGAT
s panTro4.chr7               2105471 129 - 161824586 TTATACTCATGGTCTAGAGTGCATTGAACACTAAAGTGTTTGCTAGAGGTTGTCAAAATCAATTCAGTCTTCTTCCAACTGGACCAAGGCTTCTTTGAGTTAATAAAACTCTGAGAAATCTGAGTGGAT
i panTro4.chr7             C 0 C 0
s nomLeu3.chrUn_JH996241_1    506854 127 -    540987 TTATACTCATGGTCTAGAGTGCAATGAACGCTAAAGGGTTTGCTACAGATTGTCAAAATCACTTCTGTGTTCTTCCAACTGGACCAAGGCTTCTTTGAGTTAACAAAA--CTGAGAAATCTGAGTTGAT
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s rheMac3.chr5             183915296 129 + 184069350 TTATACTCATGGTCTAAAGGGCACTGAACACTAAAGAGTTTGCTAGAGATTGTCAAAATTAATTCTGTCTTCTTCCAACTGGACCAAGGCTTCTTTGAGTTAGCAAAACTCTGAGAAATCTGAGTTGAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189309096 129 + 189454096 TTATACTCATGGTCTAAAGGGCACTGAACACTAAAGAGTTTGCTAGAGATTGTCAAAATTAATTCTGTCTTCTTCCAACTGGACCAAGGCTTCTTTGAGTTAGCAAAACTCTGAGAAATCTGAGTTGAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178725658 129 + 178775436 TTATACTCATGGTCTAAAGGGCACTGAACACTAAAGGGTTTGCTAGAGATTGTCAAAATTAATTCTGTCTTCTTCCAACTGGACCAAGGCTTCTTTGAATTAGCAAAACTCTGAGAAATCTGAGTTGAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135659535 129 + 135778131 TTATACTCATGGTCTAGAGGGCATTGAACACTAAAGGGTTTGCTAGAGATTGTCAAAATTAATTCTGTCTTCTTCCAACTGGACCAAGGCTTCTTTGAGTTAGCAAAACTCTGAGAAATCTGAGTTGAT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190764193 127 - 190850796 TTCTACTTATGGTCTAGAGGGCATTGAACGCTAAAGGTTTTGATAGAGATTGTCAAAATTAATTCTGTCTTCTTCCAATTGGACCAAGGCTTCTTTGGGTTAACAAAA--CTGAGAAATTTGAGTTGAT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18204081 109 -  59632846 TTCTACTCATGGTTTCATGAACACTGCACAACGACAGATTTGCTAACAAGTACCAAACTCAATTAGGT-----------TGAACAAA----CCTCTGAG--ACCTAAA---TGTAAGATCTGAGGTGGG
i canFam3.chr16            I 612 C 0
e mm10.chr8                 87949107 1662 - 129401213 I
e ponAbe2.chr9_random       10721241 789 +  13794794 I

a score=2215237.000000
s hg38.chr4_KI270925v1_alt    549329 741 +    555799  
s panTro4.chr7               2105600 741 - 161824586  
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10722030 743 +  13794794  
i ponAbe2.chr9_random      I 789 C 0
s nomLeu3.chrUn_JH996241_1    506981 740 -    540987  
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s rheMac3.chr5             183915425 736 + 184069350  
i rheMac3.chr5             C 0 I 1
s macFas5.chr5             189309225 736 + 189454096  
i macFas5.chr5             C 0 I 1
s papAnu2.chr5             178725787 737 + 178775436  
i papAnu2.chr5             C 0 I 2
s chlSab2.chr7             135659664 817 + 135778131  
i chlSab2.chr7             C 0 I 2
s calJac3.chr3             190764320 754 - 190850796  
i calJac3.chr3             C 0 I 1
s canFam3.chr16             18204190 713 -  59632846  
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87949107 1662 - 129401213 I

a score=1436766.000000
s hg38.chr4_KI270925v1_alt    550070 418 +    555799 GAAAAACAAG-------------GGGGAAAATAATCCATGTCCCTA-AGGCAGATGCTGAAAGATTTACCTC-----ATAACATAATTCTCTCACCAGACTTGTTTCCTGAATGTCCATTTAAATTTTAATTCTGCAAATAAAATAAAATTGGTAATAATGAAAGTGATTAAGATGGTATTTGTCCAGGGAACCAATCTCCCCACAAGATACCT--------AAGAAAGAGATATATGTACAGAAAATGAAGCACAGT-----------------AAAATACCACTTCATTACTATCTGGAGATTTTCCCCAAACACAGAGAAAGCTCTACAGAGCTGAGCTTAAGGC-AGAAGAACTCTGTTATTTACTTGGTCT-AATGCCAAAACAGGCCAGAGACCCCTCTCACTTAC----------------TTCTCTTTAATCCCAAACCCATGTCTCA-ATTTGGTC-------TAAG-AAAGAGCCGAAC-
s panTro4.chr7               2106341 410 - 161824586 GAAAAACAAG-------------GGGGAAAATAATCAATGTCCCTA-AGGCAGATGCTGAAAGATTAACCTC-----ATAACATAATTCTCTCACCAGACTTGTTTCCTGAATGTCTATTTAAATTTTAACTCTGCAAATAAAATAAAGTTGG---TAATGAAGGTGATTAAGATGGTATTTATCCAGGGAACGAATCTCCTCACAACATACCT--------AAGAAAGAGATATATGTACAGAAAACGAAGCACAGT-----------------AAAATATCACTTCATTACTAT-TGGAGATTTTCCCCAAAAACAGAGAAAGCTCTACGGAGCTGAGCTTAAGCC----AGAACTCTGTTATTTACTTGGTCT-AATGCCAAAACATGCCAGAGACCCCTTTCACCTAC-----------------TCTCTTTAATCCCAAATCCATGTCTCT-CTTTGATC-------TAAG-AAAGAGCCAAAT-
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10722773 414 +  13794794 GAAAAACAAA-------------GGGGAAAATAATCAATGTCCCTA-AGGCAGATACTGAAAGATTAACCTC-----ATAACATAATTCTCTCACCAGACTTGTTTCCTGAATGTCTATTTAAATTTCAGTTCTGCAAATAAAATAAAGTTGATCATAATGAAGGTGATTAAGATGGTATTTGTTCAGGGAACGAATCTCCTCACAACATACCT--------AAGAAAGAGATATATATACAGAAAACGAAGCACAGT-----------------AAAATACCACTTCATTACTAT-CGAAGATTTTCCCCAAACACAGAGAAATCTCTACAGAGCTGAGCTTAAGCC----AGAACTCTGTTATTTACTTGGTCT-AATGCAAAAACGGGCCAGAGACCTCTTTAACCTAC----------------TTCTCTTTAATCCCAAACCCATGTCTTG-GTTTGATC-------TAAG-AAAGAGCCAAAT-
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chrUn_JH996241_1    507721 416 -    540987 GAAAAACAA--------------GGGGAAAATAATCAATGTCCCTA-AGGCAGATGCTGAAAGATTGACCTC-----ATAACATAATTCTCTCACCAGACTTGTTTCCTGAATGTCTATTTAAATTTTAATTCTGCAAATAAAATAAAGTTGGTAATAATGAAGGTGATTAAGATGGTATTTGTCCAGGGAACGAATCTCCTCACAACATACCT--------AAGAAAGAGATATATGTACAGAAAATGAAGCACAGT-----------------AAAATACCACTTCATTACTAT-CGGAGATTTTCCCCAAACACAGAGAAAGCTCTACAGAGCTGAGCTTAAGCC-AGAAGAACTCTGTTATTTACTTGGTCT-AATGCCAAAACAGGCCAGAGACCCCTTTTACCTAC----------------TTCTCTTTAATCCCAAACCCATGTCTCA-GTTTGATC-------TAAG-AAAGAGCCAAAT-
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s rheMac3.chr5             183916162 418 + 184069350 AAAAAACAAG-------------GGGGAAAATAATCAACGTCCCTA-AGGCAGATGCTGAAAGATTTACCTC-----ATAACATAATTTTCTCACCAGACTTGTTTCCTGAATGTCCATTTCAATTTTAATTCTGCAAAGAAAATAAAGTTGGTAATAATGAAGGTGATTAAGATGATATTTGTCCAGGGAATGAACCTCCCCACAACACACCT--------AAGAAAGAGATATATATACAGAAAACAAAGCACAGT-----------------AAAATACCACTTCACTACTATCTGGAGATTTTCCCCAAACACAGAGAAAGCTCTACGGAGCTGAGCTTAAGCC-AGAAGAACTCTATTATTTATATGGTCT-AATGCCAAAACAGGCCAGAGACCCCTTTCACCTAC----------------TTCTCTTTAATCCCAAACCCATGTCTTG-GTTTAATC-------TAAG-AAAGAGCCAAAC-
i rheMac3.chr5             I 1 C 0
s macFas5.chr5             189309962 418 + 189454096 AAAAAACAAG-------------GGGGAAAATAATCAATGTCCCTA-AGGCAGATGCTGAAAGATTTACCTC-----ATAACATAATTTTCTCACCAGACTTGTTTCCTGAATGTCCATTTCAATTTTAATTCTGCAAAGAAAATAAAGTTGGTAATAATGAAGGTGATTAAGATGATATTTGTCCAGGGAATGAACCTCCCCACAACACACCT--------AAGAAAGAGATATATATACAGAAAACAAAGCACAGT-----------------AAAATACCACTTCACTACTATCTGGAGATTTTCCCCAAACACAGAGAAAGCTCTACGGAGCTGAGCTTAAGCC-AGAAGAACTCTATTATTTATATGGTCT-AATGCCAAAACAGGCCAGAGACCCCTTTCACCTAC----------------TTCTCTTTAATCCCAAACCCATGTCTTG-GTTTAATC-------TAAG-AAAGAGCCAAAC-
i macFas5.chr5             I 1 C 0
s papAnu2.chr5             178726526 413 + 178775436 aaaaaaCAAG-------------GGGGAAAAT----AACATCCCTA-AGGCAGATGCTGAAAGATTTACCTC-----ATAACATAATTTTCTCACCAGACTTGTTTCCTGAATGTCCATTTCAATTttaattctgcaaagaaaataaagttggtaATAATGAAGGTGATTAAGATGGTATTTGTCCAGGGAATGAACCTCCCCACAACACACCT--------AAGAAAGagatatatatacagaaaacaaagcaCAGT-----------------AAAATACCACTTCACTACTCTCTGGAGATTTTCCCCAGACACAGAGAAAGCTCTACGGAGCTGAGCTTAAGCC-AGAAGAACTCTATTATTTATATGGTCT-AATGCCAAAACAGGCCAGAGACCCCTTTCACCTTC----------------TTCTCTTTAATCCCAAACCCA-GTCTTG-GTTTAATC-------TAAG-AAAGAGCCAAAC-
i papAnu2.chr5             I 2 C 0
s chlSab2.chr7             135660483 413 + 135778131 AAAAAACCAG-------------GGGGAAAATAATCAATGTCCCTA-AGGCAGATGCTGAAAGATTTACCTC-----ATAACATAATTTTCTCACCAGACTTGTTTCCTGAATGTCCATTTCAATTTTAATTCTGCAAAGAAAATAAAGTTGGTAATAATGAAGGTGATTAAGATGGTATTTGTCCAGGGAATGAACCTCCCCACAACACACCT--------AAGAGAGAGATATATGTACAGAAAACAAAGCACAGT-----------------AAAATACCACTTCACAA-----TGGAGATTTTCCCCAAACACAGAGAAAGCTCTACGGCACTGAGCTTAAGCC-AGAAGAACTCTATTATTTACATGGTCT-AATGCCAAAACAGGCCAGAGACCCTTTTCACCTAC----------------TTTTCTTTAATCCCAAACCCATGTCTTG-GTTTGATC-------TAAG-AGAGAGCCAAAC-
i chlSab2.chr7             I 2 C 0
s calJac3.chr3             190765075 416 - 190850796 GAAAAACAAG-------------GGGGAAAATAATCAATGTCCCTA-AGGCAGATGCTGAAACATTCA---T-----ATAACATAATTCTCTCACCAGACTTGTTCCTTGAATGTCCATTTAAATTTTAATTCTGCAAAGAAAATAAAGTTGGTAATAATGAAGGTGATTAAGATGATATTTGGCCAGGGAACGAATCTCCCCACAACATACCT--------AAAAAAGAGATATATGTACAGAAAATAAAGCGGAGT-----------------AAAATACCACTTTATTATTATCTAGAGATTTTCCCCAAACACAGAGAAAGCTCTACTAAGCTGAGCTTAAAGC-CAGAAAACTCTGTTACTTACTTGGTCTAAATACCAAAACAGGCCAGAGACCCCTTTCAACTAC----------------TTCTCTCCAATCCCAAACCCATGTCTTG-GTTTGATC-------TAAG-AAAGAGCCAAAC-
i calJac3.chr3             I 1 C 0
s mm10.chr8                 87950769 448 - 129401213 GAAGAACAA--------------GAGGAAAACTATCTGTGTCCCTA-AGA-AGATGCT-ACAGACT-ACCTC-----ATAATGCAGTTCTCT--CCATACTTGTTCATTGCATCTCTGTTTAAAATTTAATTCAGCAAGGAAAGTAGACTTTGTGATAACAGGGGCAATGAAGATGGTGCTAGCTAGGAACATCTTTCTTCCCCC---TTGTCTCTGTGGGAAAAAAAAAACTGTGTATGCCAAAAATAAGATTCGGTtaaaaataataataataataataatGCTTTATTACAACCTGGAGATTTTTCCCAAACTCAGAGTGAACTCTATTGAGCTGAGTC----------AGAACTCTAACACTAACTCAGCCT-GATGCCAAAGCAAGACAGAGACCACCTCCACCCACAACCCACTTCTGCTCTTTCTCTCC-ACCCCAACCCTATGTCTTACATCTTGTCACTCTTGTAAG-AAGGagctagac-
i mm10.chr8                I 1662 I 3670
s canFam3.chr16             18204903 419 -  59632846 GAAGAACAAGGTGGGGTGCAGGAGAAGAAGACAATCAATGTTCCTACAAGAAGATGATAAAGGATTTGCTTCATAGTATAGTATAGTTCTTTCACTATACTTGTGTCTCAAAACTCCATTTAGATTTCAGTTTCACAAAGGAAATACAATTTGTTATAATGGAAGTGATTAAGATGGTATCCGGC--AGGAACAAATTTCCCCGAGATGTCCCT--------AAGAAAGAAACA-----------------------------------------TAAATAACACTTTATTACTACCTGGATATTTTCTCCAAGCACAGAG--AGGTCTAATGAGCTGAGCTTAAACCTGGAAGGATTTTGTTACTAACGTGGTCT-ATTGCCAGAGCAGGCCAGAGACCTCCTCCATCTAC----------------TTCTCCCCAAACCCAAGTCCA-GTCTTAGATCTGGCCACCCTGGTAGGTAGAGGACTGAAAC
i canFam3.chr16            C 0 C 0

a score=452718.000000
s hg38.chr4_KI270925v1_alt    550488 148 +    555799 ACCCAGGAGGCACCAGGGTAGAG--AAAAGCAGCCAGCCAGAGAGTGACCTCCAT---GCCA-GGGGAGTGTGTCTGAGCTTT---GTTTTATTTTTCTTATTTGTCTGTAGTTGTGTGATTGGTAGAAGAGAGTAGATATGAAGTCTACTGACACA
s panTro4.chr7               2106751 148 - 161824586 GCCCAGGAGGCGCCAGGGTAGAG--AAAAGCAGCCAGCTGGAGAGTGGCCTCCGT---GCCA-GGGGAGTGTGTCTGAGCTTT---GTTTTATTTTTCTTATTTGTCTGTAGTTGTGTGATTGGTAGAAGAGAGTAGATATGAAGTCTACTGACACA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10723187 148 +  13794794 GTCCAGGAGGCTCCAGGGTAGAG--AAAAGCAGCCAGCTGGAGAGTGGCCTCCGT---GCCA-GGGGAGTGTGTCTCAGCTTT---GTTTTATTTTTCTTATTTTTCTGTAATTGTGTGATTGGTAGAAGAGAGAAGATATGAAGTCTACTGACACA
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chrUn_JH996241_1    508137 148 -    540987 GCCCAGGAGGCGACAGGGCAGAG--AAAAGCAGCCAGCCAGAGAGTGGCCTGCAT---GCCA-GGGGAGTGTGTCTGAGCTTT---GTTTCATTTTTCTTATTTGTCTGTAGTTGTGTGATTGGTAGAAGAGAGTAGATATGAAGTCTACTGACATA
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s rheMac3.chr5             183916580 148 + 184069350 ACCCAGCAGGCGCCAGGGTAGAG--AAAAGCAGCCAGCCAGAGAGTGGCCTCCGT---GCCA-GGGGAGTGTGTCTGAGCTTT---GTTTTATTTTTCTTATTTGTCTGTAGTTGTGTGATTAGTAGAAGAGAGTAGATATGAAGTCTACTGACACA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189310380 148 + 189454096 GCCCAGCAGGCGCCAGGGTAGAG--AAAAGCAGCCAGCCAGAGAGTGGCCTCCGT---GCCA-GGGGAGTGTGTCTGAGCTTT---GTTTTATTTTTCTTATTTGTCTGTAGTTGTGTGATTAGTAGAAGAGAGTAGATATGAAGTCTACTGACACA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178726939 148 + 178775436 GCCCAGCAGGCGCCAGGGTAGAG--AAAAGCAGCCAGCCAGAGAGTGGCCTCCGT---GCCA-GGGGAGTGTGTCtgagcttt---gttttatttttcttatttgtctgtAGTTGTGTGATTGGTAGAAGAGAGTAAATATGAAGTCTACTGACACA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135660896 148 + 135778131 GCCCAGCAGGCGCCAGGGTAGAG--AAAAGCAGCCAGCCAGAGAGTGGCCTCCGT---GCCA-GGGGAGTGTGTCTGAGCTTT---GTTTTATTTTTCTTATTTGTCTGTAGTGGTGTGATTGGTAGAAGAGAGTAGATATGAAGTCTACTGACACA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190765491 149 - 190850796 GTCCAGAAGCGTCTAGGGTAGAG--GAAAGCAGCCAGGCAGAAAGCGGCCTCCAT---GCCAGGGGGAGCGTGTCTGAGCTTT---GTTTTATTTTTCTTTTTTGTTAATGGTTGTGTGACTGGTAGAAGAGAGTGGTTATGAAGTCTCCTGACACA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18205322 114 -  59632846 -------ACCTGTCAGAGAAGAGGCAAAGGAAAACAGCCAGAGACTGGTCTCAATGACGCCA-GGGGAACATACCTAGGTGTTGGCGTTTTTTTTGTCTTTTGTTTTTGTTTTTCTATATTT-----------------------------------
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87951217 3670 - 129401213 I

a score=27685.000000
s hg38.chr4_KI270925v1_alt    550636 6 +    555799 GGATTG
s panTro4.chr7               2106899 6 - 161824586 GGATTG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10723335 6 +  13794794 GGATTG
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chrUn_JH996241_1    508285 6 -    540987 GGATTG
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s rheMac3.chr5             183916728 6 + 184069350 GGATTG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189310528 6 + 189454096 GGATTG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178727087 6 + 178775436 GGATTG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135661044 6 + 135778131 GGATTG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190765640 6 - 190850796 GGACTG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87954887 6 - 129401213 GGATTA
i mm10.chr8                I 3670 C 0
s canFam3.chr16             18205436 5 -  59632846 -GATTG
i canFam3.chr16            C 0 C 0

a score=566903.000000
s hg38.chr4_KI270925v1_alt    550642 170 +    555799 GTCTTCA-GGCATGTCTTACCAAGCAT-------------AGGGGTTCCACAAATAAGAGAGCAATGATCAGACTTTCTTCTAAAAGGAGCAGCCACAAGCTACCTTAACTCTCCAACTTGCCCATAAATCTTCACCTACAGTT-AGGAAGATTTCACCATTAGCTGTGGCCCATAAAAGATCCT
s panTro4.chr7               2106905 182 - 161824586 GTCTTCA-GGCATGTCTTACCAAGCAT-TTGGGGGAACAGAGGGGTTCCACAAATAAGAGAGCAATGATCAGACTTTCTTCTAAAAGGAGCAGCCACAAGCTACTTTAACTCTCCAACTTGCCCATTAATCTTCACCTAGAGTT-AGGAAGATTTCACCATTAGCTGTGGCCCATAAAAGATCCT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10723341 183 +  13794794 GTCTTCA-GGCATGTCTTACCAAACATTTTGGGGGAACAGAGGGGTTCCACAAATAAGAGAGCAATGATAAGACTTTCTTCTAAAAGGAGCAGACACAAGCTAACTTAACTCTCCAACTTGCCCATTAATCTTCACCTGGAATT-AGGAAGATTTCTCCATTAGCTGTGGCCCATAAAAGATCCT
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chrUn_JH996241_1    508291 182 -    540987 GTCTTCA-GGCATGTCTTACCAAGCAT-TTGGGGGAAAAGAGGGGTTCCACAAATAAGAGAGCAATGATCAGACTTTCTTCTAAAAGGAGCAGCCACAAGCTACCTTAACTCTCCAAATTGCCCATAAATCTTCACCTAGAGTT-AGGAAGATTTCACCATTAGCTGTGGCCCATAAAAGACCCT
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s rheMac3.chr5             183916734 182 + 184069350 GTCTTCA-GGTGTGTCTTACCAAGCAT-TTGGGGGAACAGAGGGGTTCCACAAATAAGCAAGCAATGATCAGACTTTCTTCTAAAAGGAGCAGCCACAAGCTACCTTAACTCTCCATCTTGCCCATAAATCTTCACCTAGAGTT-AGGAAAATTTCACCATTAGCTGTGGCCCATAAAAGATCCT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189310534 182 + 189454096 GTCTTCA-GGTGTGTCTTACCAAGCAT-TTGGGGGAACAGAGGGGTTCCACAAATAAGCAAGCAATGATCAGACTTTCTTCTAAAAGGAGCAGCCACAAGCTACCTTAACTCTCCATCTTGCCCATAAATCTTCACCTAGAGTT-AGGAAAATTTCACCATTAGCTGTGGCCCATAAAAGATCCT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178727093 182 + 178775436 GTCTTCA-GGCGTGTCTTACCAAGCAT-TTGGGGGAACAGAGGGGTTCCACAAATAAGAGAGCAATGATCAGACTTTCTTCTAAAAGGAGCAGCCACAAGCTACCTTAACTCTCCATCTTGCCCATAAATCTTCACCTAGAGTT-AGGAAAATTTCACCATTAGCTGTGGCCCATAAAAGATCCT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135661050 182 + 135778131 GTCTTCA-GGCATGTCTTACCAAGCAT-TTGGGGGAACAGAGGGGTTCCACAAATAAGAGAGCAATGATCAGACTTTTTTCTAAAAGGAGCAGTGACAAGCTACCTTAACTCTCCAACTTGCCCATAAATCTTCACCTAGAGTT-AGGAAAATTTCACCATTAGCTGTGGCCCATAAAAGATCCT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190765646 182 - 190850796 GTCTTCA-CGCATGTCTTACCAAGCAT-TTGGGGGAACAGAGGAGTTCCACAAGTAAGAGAGCAATGAACAGACTTTCTTCTAAAAGGTGCAGCCAAGAGCTACCCTAACTCTCCAACTTGCCCATAAATCTTCACCTAGCGGT-AGGAACATTTTACCATTAGCTATGGCCTGTAATGGATCCT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87954893 169 - 129401213 TTCTGCAGGGCTTGATTTGCTCATCGC-T----GGATCAGCAAGATCCCG-AAGGAAGAGAGAA--GACTGGCCTCTCTGCCAAAAGGAGAACCCCCAGCCTTCTGTAATTCTCCAGCTCACCCAAGAAAATCCGCTCAGAGTTGAGCAAAGCTTCTTCTTTAACT--------CAAAAAAGCCT
i mm10.chr8                C 0 C 0
e canFam3.chr16             18205441   0 -  59632846 C

a score=384340.000000
s hg38.chr4_KI270925v1_alt    550812 148 +    555799 TAAGC--TTGACCAACCACAGAGGTCCATCTCCTTGAGGAGGAAGTGAAAGG--GGTATGGACAGAAGCTGTGAGCTTTCTGTCC---TCCACAGGCCCCCAGCTGTGTCTTCTACTT-----CTTGTACAAGATAG--TCTCCAAATGATGTTTTCTGGCA
s panTro4.chr7               2107087 148 - 161824586 TAAGC--TTGACCAACCACAGAGGTCCATCTCCTTGAGGAGGAAGTGAAAGG--GGTATGGACAGAAGCTGTGAGCTTTCTGTCC---TCCGCAGGCCACCAGCTGTGTCTTCTACTT-----ATTGTACAAGATAG--TCTCTAAATGATGTTTTCTGGCT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10723524 148 +  13794794 TAAGC--TTGACCAACCACAGAGGTCCATCTCCTTGAGGAGGAAGTGAAAGG--GGTATGGACAGAAGCTGTGAGCTTTCTGTCC---TCTGCAGGCCCCCAGCTGTGTCTTCTACTT-----CTTGTACAAGATAG--TCTCCAAATGATGTTTTCTGGCT
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chrUn_JH996241_1    508473 143 -    540987 TAAGC--TTGACCAACCACAGAGGTCCATCTCCTTGAGGAGTAAGTGAAAGG--GGTATGGATAGAAGCTGTGAGCTTTCTATCC---TCCACAGGCCCCCAGCTGTGTCTTCTACTT-----CTTGTAACA-------TCTCCAAATGATGTTTTCTGGCT
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s rheMac3.chr5             183916916 152 + 184069350 TCAGCTTTTGACCAACCACAGAGGTCCATCTCCATGAAGAGAAAGTGAAAGGGAGGTATGGGCAGAAGCTGTGAGCTTTCTGTCC---TCTGTAGGCCCCCTGCTGTGTCCTCTACTT-----CTTGTACAAGATGA--CCTCTAAGTGATGTTTTCTGACT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189310716 152 + 189454096 TCAGCTTTTGACCAACCACAGAGGTCCATCTCCATGAAGAGAAAGTGAAAGGGAGGTATGGGCAGAAGCTGTGAGCTTTCTGTCC---TCTGTAGGCCCCCTGCTGTGTCCTCTACTT-----CTTGTACAAGATGA--CCTCTAAGTGATGTTTTCTGACT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178727275 152 + 178775436 TCAGCTTTTGACCAATGACAGAGGTCCATCTCCGTTAAGAGAAAGTGAAAGGGAGGTATGGGCAGAAGCTGTGAGCTTTCTGTCC---TCTGCAGGCCCCCTGCTGTGTCCTCTACTT-----CTTATACAGGATGG--CCTCCAACTGATGTTTTCTGACT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135661232 149 + 135778131 TCAGCTTTTGACCAACCACAGAGGTCCATCTCCGTGAAGAGAAAGTGAAAGGGAGGTATGGGCAGAAGCTGTGAGCTTTCTGTCC---TCTGCAGGCCCCCTGCTGTGTCCTCTA--------CTTATACAAGATGG--CCTCCAAGTGATGTTTTCTGACT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190765828 150 - 190850796 TAAGC--TTGACCAACCACAGAGATCCATCTCCTTGAAGAGAAAGTGAAAGGGAGATAAAGAAGGAAGCTGTGAGCTTTCTGTCC---TCTGCAGGCCCCCAGCTGTGTCTTCTACTT-----CTTACACAAGATAG--CGTCCAAATGATGTTTTCCAACT
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87955062 144 - 129401213 TAACC--TTGGCTAACCATAG-------CTTCCCTGGAGATAAACAGAAGAC--GGAGTGAGTAGACTCTGGGCATCTACTGTCCAAGTCTACAGGCC----AGTGTGTCATTTTATTGAGCCCATATGC-AGAAAG--CCTCAAAATAGTGTTTGCTGACA
i mm10.chr8                C 0 I 628
s canFam3.chr16             18205441  44 -  59632846 -----------------------------------------------------------------------------------------------------------------TATGT-----TTGGTAAAAGAGGAATCCTTCAAATGATACTTCCACATT
i canFam3.chr16            C 0 C 0

a score=128410.000000
s hg38.chr4_KI270925v1_alt    550960 40 +    555799 GACAATGCCACAGAACTGATCCTTATCTCACTATGGAAAT
s panTro4.chr7               2107235 40 - 161824586 GACAATGCCACAGAACTGATCCTTATCTCACTATGGAAAT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10723672 40 +  13794794 GACAATGCCACAGAATTGATCCTTATCTCACTATGGAAAT
i ponAbe2.chr9_random      C 0 I 4673
s nomLeu3.chrUn_JH996241_1    508616 40 -    540987 GACAATGCCAGAGAACGGATCCTTATCTCACTATGGAAAT
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s rheMac3.chr5             183917068 38 + 184069350 GACCATGCC--AGGACTGATCCTCATCTCACTATGGAAAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189310868 38 + 189454096 GACCATGCC--AGGACTGATCCTCATCTCACTATGGAAAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178727427 38 + 178775436 GACCGTGCC--AGGACTGATCCTCATCTCACTATGGAAAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135661381 38 + 135778131 GACCGTGCC--AGGACTGATCCTCATCTCACTATGGAAAT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190765978 40 - 190850796 GACAATGCTACAGAACTGATCCTTATCTCACTATGGAAAT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18205485 40 -  59632846 GACGATACCACAGAACTGGTTCTTATCTCACTATGAATAT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87955206 628 - 129401213 I

a score=250149.000000
s hg38.chr4_KI270925v1_alt    551000 76 +    555799 GAAAGATTTCAAAGAATTTGTTGCCTGAAATATGGTGCCCTAATCACATATTAATAAAGCTGCTATCCAGGAAGAA
s panTro4.chr7               2107275 76 - 161824586 GAAAGATTTCAAAGAATTTGTTGCCTGAAATATCGTGCCCTAATCATATATTAATAAAGCTGCTATCCAGAAAGAA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10728385 76 +  13794794 GAAAGATTTCAAATAATTTGTTGCCTGAAATATGGTGCCCTAATCACATATTAATAAAGCTGCTATCCAGAAAGAG
i ponAbe2.chr9_random      I 4673 C 0
s nomLeu3.chrUn_JH996241_1    508656 76 -    540987 GAAAGATTTCAAAGAATTTGTTGCCTGAAATATGGTGCTCAAATCACATATTAATAAAGCTGCTATCCAGAAAGAA
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s rheMac3.chr5             183917106 76 + 184069350 GAAAGGTTTCAAGGAATTTGTTGCCTGAAATGTGGTGCCCTAATTACATATTAATAAAGCTAATATCCAGAAAAAA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189310906 76 + 189454096 GAAAGGTTTCAAGGAATTTGTTGCCTGAAATGTGGTGCCCTAATTACATATTAATAAAGCTAATATCCAGAAAAAA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178727465 76 + 178775436 GAAAGATTTCAAGGAATTTGTTGCCTGAAATGTGGTGCCCTAATCACATATTAATAAagctaatatccagaaaaaa
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135661419 74 + 135778131 GAAAGATTTCAA--AATTTGTTGCCTGAAATGTGATGCCCTAATCACATGTTAATAAAGCTAATATCCAGAAAGAA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190766018 75 - 190850796 GAAAGATTTCAAAGAACTTGTTGCCTGAAATATGGTGCTCTAATTACCTA-TAATAAAGCCGCTATACAGAAAGAA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18205525 76 -  59632846 TAAAGATTTCAAAGAATTTCTTATCTGTGCTATGGTGCCTTTTTCACAGATTAATAAAGCTGCTACCCAAAAAGAA
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87955206 628 - 129401213 I

a score=389197.000000
s hg38.chr4_KI270925v1_alt    551076 140 +    555799 GGCAGATTTCAAAAGAAAGGCTGTTAGCCTTCTCAGGGACCT-AAAAAGTACATATtgtagaacaatggtaaatagatcttggaatcaggtagactttaattcaagccccagctatgccagttattaacttatgtgacatt
s panTro4.chr7               2107351 140 - 161824586 GGCAGATTTCAAAAGAAAGGTTGTTAGCATTCTCAGGGACCT-AAAAATTACatattgtagaacaatggtaaatagatctcggaatccggtagactttaattcaaaccccagctatgccacttattaacttatgtgacatt
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10728461 140 +  13794794 TGCAGATTTCAAAAGAAAGGCTGCTAGCATTCTCAGGGACCT-AAAAAGTACatattgtagaacaatggtaaatagatcttggaatcagttagactttaattcaaaccccagctatgccactcattaacttatgtgacatt
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chrUn_JH996241_1    508732 141 -    540987 GGCAGATTTCAAAAGAAAGGCTGTTAGCATTCTCAGGGACCTAAAAAATTACATATtgtagaacaatggtaaatagatcttggaatcaggtagactttaattcaaaccccagctatgccacttattaacttatgtgacatt
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s rheMac3.chr5             183917182 140 + 184069350 GGCAGATTTCAAAAGAATGGCTGTTAGCATTCTCAGGGACCT-AGAAAGTACATATtgtagaacaatggtaaataggtcttggaatcaggtagactttaattcaaaccccagctatgccacttactaacttacgtgacatt
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189310982 140 + 189454096 GGCAGATTTCAAAAGAATGGCTGTTAGCATTCTCAGGGACCT-AGAAAGTACATATTgtagaacaatggtaaataggtcttggaatcaggtagactttaattcaaaccccagctatgccacttactaacttacgtgacatt
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178727541 140 + 178775436 GGCAGATTTCAAAAGAACGGCTGTTAGCATTCTCAGGGACCT-AGAAAGTACATATTGTAGAACAATGGTAAATAGATCTTGGAATCAGGTAGACTTTAATTCAAACCCCAGCTATGCCACTTACTAACTTACGTGACATT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135661493 140 + 135778131 GGCAGATTTCAAAAGAACAGCTGATAGCATTCTCAGGGACCT-AGAAAGCACATATTgtagaacaatggtaaataggtcttggaatcaggtagactttaattcaaaccccagctatgccacttactaacttacgtgacatt
i chlSab2.chr7             C 0 C 0
s canFam3.chr16             18205601 134 -  59632846 GTGAGATTTCAAATGAAAAGATGTTAGCACTCCTGGGGACTT-AAAAA----ATATGGTAAGAGaatggtaaacacgtcctggaatcagattgac-ttgattcaagtcccagctataccacttattaactc-tgcaacctt
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87955206 628 - 129401213 I
e calJac3.chr3             190766093   0 - 190850796 C

a score=1238367.000000
s hg38.chr4_KI270925v1_alt    551216 397 +    555799 gggaaaggctctcaaatttagt---tttgcaaaatcagaataatataggtagccaacaaatagggtttaatggaggtaataatgaaggtgattaagatgataaaattaaataatgaatataaagtgc------ttagcaT--GTAATAAATTTTATTGTATGATTTCAAAGCACATGC-TTTACCTACAGTGCTATAAAGCTGCTTGCAATAGTCAAAGCTAATAGAAGCTCTAGTCAGAGCTAATAGAAGCCTTGTGTATATAATTATTTAAGAATTCTGTAAATATACATAATAGGGTAGGAATGAGAAAATC----------------------------TTTAGAGGAAATATTCAAATATGCTTGGTTTCTAGCAAATCCAGATAGACCGTTTTGGCAACAACCAAGTCATAATTTTAAGTCTTGTTATAGG
s panTro4.chr7               2107491 397 - 161824586 gggaaagcctctcaaatttaga---tttgcaaaatcagaataatataagtagccaacaaatagggtttaatggaggtaataatgaaggttattaagatgataaaactaaacagtgaatacaaagtcc------ttagcat--ttaataaa-tTTATTGTATGATTTCAAAGCACATGCTTTTACCTACAGTGCTATAAAGCTGCTTGCAATAGTCAAAGTTAATAGAAGCTCTCTTCAGAGCTAATAGAAGCCTTATATATGTAATTATTTAAGAATTCTGTAAATATACACAATAGGGTAGGAATGAGAAAATA----------------------------TTTAGAGGAAATATTCAAGTATGTTTGATTTCTAGCAAATCCAGATAGACAGTTTTGGCAACAACCAAGTCATAATTTTAAGTCTTGTTATAGG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10728601 397 +  13794794 gggaaagcctctcaaatttaga---tttgcaaaatcagaataatataagtagccaacaaatagcattTAATGGAGGTAATAATGAAGGTGATTAAGATGATAAAATTAAATAGTGAATTTAAAGTGT------TTAGCAT--GTAATAAA-ATTATTGTATGATTTCAAAGCACATGCTTTTACCTACAGTGCTATAAAACTACTTGCAATAGTCAAAGCTAATAGAAGCTCTCATAAGAACTAATAGAAGCCTTGGGTATGTAATTATTTAAGAATTCTGTAAATATACACAATAGGGTAGGAATGAGAAAATC----------------------------TTTAGAGGAAATATTCAAGTATGTTTGATTTCTAGCAAATCCAGATAGACAGTTTTGGCAACAACCAATTCATAATTGTAAGTCTTGTTATAGG
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chrUn_JH996241_1    508873 396 -    540987 gggaaagcctctcaaatttagt---tttgcaaaatcagaataatataagtagccaacaaatagggtttaatggaggtaaaaatgaaggtgattaagatgataaaattaaatagtgaatacaaagtgc------ttagcat--ttaataaa-tttattctatgattTCAAAGCACATGCTTTTACCTACAGTTCTATAAAGCTTCTTGCAATAGTCAAGGCTAATAGAAGCTATCGTCAGAGCTAATAGAAGCCTTGTGTATGTAATTATTTAAGAATTCTGTAAATATACCCAACAGGGTAGGAATGAGAAAATC-----------------------------TTAGAGGAAATATTCAAGTATGCTTGATTTCTAGCAAATCCAGATAAACAGTTTTGGCAACAACCAACTCATAATTTTAAGTGTTGTTATAGG
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s rheMac3.chr5             183917322 404 + 184069350 gggaaagcctctcaaatttagt---tgtgcaaaatcagaataatgtaagtagccaacaaatagggtttaatggaggtaataatgaaggtgatcaaaatgataaaattaaataacaaatataaagtgcttagcaTTAGCAT--TTAATAAATTTTATTGTGTGATTTCAAAGCACATGCTTTTACCTACAGTGCTATAAAGCTGCACGCGATAGTCAAAGCTCACAGAAGCTTTAGTCAGAGCTAATAGAAGCCTTGTGTATGTAATTATTTAAAAACTCTGTAAATATACATAATAGAGTAGGAATGAGAAAATC----------------------------TTTAGAGGAAATATTCAAGTATGCTTGGTTTTTAGCAAATCCAGATAGACGGTTTTGGCAACAATCAAGTCATAGTTTTAAGTCATGTTATTGG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189311122 404 + 189454096 gggaaagcctctcaaATTTAGT---TGTGCAAAATCAGAATAACGTAAGTAGCCAACAAATAGGGTTTAATGGAGGTAATAATGAAGGTGATCAAAATGATAAAATTAAATAACAAATATAAAGTGCTTAGCATTAGCAT--TTAATAAATTTTATTGTGTGATTTCAAAGCCCATGCTTTTACCTACAGTGCTATAAAGCTGCACGCGATAGTCAAAGCTCACAGAAGCTTTAGTCAGAGCTAATAGAAGCCTTGTGTATGTAATTATTTAAAAACTCTGTAAATATACATAATAGAGTAGGAATGAGAAAATC----------------------------TTTAGAGGAAATATTCAAGTATGCTTGGTTTTTAGCAAATCCAGATAGACGGTTTTGGCAACAATCAAGTCATAGTTTTAAGTCATGTTATTGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178727681 396 + 178775436 GGGAAAGCCTCTCAAATTTAGT---TGTGCAAAATCAGAATAACGTAAGTAGCCAACAAATAGGGTTTAATGGAGGTAATAATGAAGgtgattaaaatgataaaattaaataacaaatataaagtgcttagcattagcat--ttaataaattttattgtgtgatTTCAAAGCACATGCTTTTACCTACAGTGCTATAAAGCTGCACGCGATAGTCAAAGCTCACAGAAGCTTTAGTCAGAGCTAATAGAAGCCTTGtgtatgtaattatttaaa--------aaatatacataataggGTAGGAATGAGAAAATC----------------------------TTTAGAGGAAATATTCAAATATGCTTGGTTTTTAGCAAATCCAGATAGACGGTTTTCGCAACAATCAAGTCATAATTTTAAGTCATGTTATTGG
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135661633 400 + 135778131 gggaaagcctctcaaATTTAGT---TGTGCAAAATCAGAATAATGTAAGTAGCCAAGAAATAGGGTTTAATGGAGGTAATAATGAAGGTGATTAAAATGATAAAATTAAATAACAAATATAAAGGGCTTAGCATTAGCAT--TTAATAAATTTTATTGTGTGATTTCAAAGCACATGCTT---ACTACAGTGCTATAAAGCTGCATGCGATAGTCAAAGCTAACAGAAGCTTTAGTCAGAGCTAATAGAAGCCTTGTGTATGTAA-TATTTAAAAACTCTGTAAATATACATAATAGGGTAGGAATGAGAAAATC----------------------------TTTAGAGGAAATATTCAAGTATGCTTGGTTTTTAGCAAATCCAGATAGACGGTTTTGGCAACAATCAAGTCATAATTTTAAGTCACATTATTGG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190766093 404 - 190850796 GGGAAAGCCTCTCAAATTTAGT---TTTACACAATCAGAATAACATGAGTAGCCAACAAATAGGGTTTAATGGAGGTAATAATGAAAGTGATTACAATGATACAATTAAATAATAAATATAAAGCGCTTAGCATTAGCAT--TTAATAAATTTTATTGTATAATTTCAAAGCACATGCTTTTACCTACAGTGCTATAGAGCTGCTTGCAATAGTCAAAGCTAATAGAAGCTTTAGTTAATGCCAATAGAAGCCTTGTATATGGAATTATTTAAGAATTCTGTAAATATACCTAATAGGGTAGGAATGAGAAAAAC----------------------------TTTAGAGGTCATGTTCAAGTATGCTTGGTTTCTAACAAATCCAGATAGACAGTTTTGGCAAGAACCAAGTCATAATTTTAAGTCTTGTTATAGT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18205735 382 -  59632846 gggcaa--ctctcaaatttagttcctctgcaaaattggaacagtgagagtggccaac-aatagggtttcatgtg------------------------gattaaactgaataatgtatataaagcacttagCATCAGCTTTGTTCATAAATTCTTCTGAATGATTTCAAAGTATATGCCTTTACCAACAGTGTTATAAAGCCTCCT----------------ATAAAAGATT------AAGCTATTAGGAGTCTTGTGGATGTCATTCTGTAAAAATCCTATAAATAT----AATAGAGTAAGAATAAACAAATCTTAAAAAAAAAAAAAGAATAAACAAATCTTTGCAGGAAATAGTCAAGTATGCT--GTTTTTAACAAGTCCAGATGGACAGTTTGGACAATAATCAAGGCATAATTTTAAGTCTTTCTCTAGG
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87955206 628 - 129401213 I

a score=1561029.000000
s hg38.chr4_KI270925v1_alt    551613 488 +    555799  
s panTro4.chr7               2107888 478 - 161824586  
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10728998 488 +  13794794  
i ponAbe2.chr9_random      C 0 C 0
s nomLeu3.chrUn_JH996241_1    509269 492 -    540987  
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s rheMac3.chr5             183917726 490 + 184069350  
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189311526 489 + 189454096  
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178728077 488 + 178775436  
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135662033 489 + 135778131  
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190766497 488 - 190850796  
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87955834 439 - 129401213  
i mm10.chr8                I 628 I 44
s canFam3.chr16             18206117 496 -  59632846  
i canFam3.chr16            C 0 C 0

a score=286838.000000
s hg38.chr4_KI270925v1_alt    552101  82 +    555799 GGGACTACAGCTTCATGGA--------------CAAATTCTGAAGAATTTGTCTCTGCTCCTGTGGGATG-------CTAACCTAATCAATCAAGGAATGTTT
s panTro4.chr7               2108366  82 - 161824586 GGGACTATAGCTTCATGGA--------------CAAATTCTGAAGAATTTGTCTCTGCTCTTGTGGGATG-------CTAACCTAACCAATCAAGGAATGTTT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr9_random       10729486  82 +  13794794 AGGACTATAGCTTCATGGA--------------AAAATTCTGAAGAATTTGTCTCTACTCTTGTGGGATG-------CTAACCTAACCAATCAAGGAATGTTT
i ponAbe2.chr9_random      C 0 N 0
s nomLeu3.chrUn_JH996241_1    509761  82 -    540987 GGGACCATAGCTTCATGGA--------------CAAATTCTGAAGAATTTGTCTCTGCTCCTGTGGGATG-------CTAACCTAACCAATCAAGAAATGTTT
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s rheMac3.chr5             183918216  82 + 184069350 GGGACTATAGCTTCATGGA--------------CAAATTCTGAAGAATTTGTCTCTGCTCCTGTGGGATG-------CTAACCTAACCAATCAAGGAATGTTT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189312015  82 + 189454096 GGGACTATAGCTTCATGGA--------------CAAATTCTGAAGAATTTGTCTCTGCTCCTGTGGGATG-------CTAACCTAACCAATCAAGGAATGTTT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178728565  82 + 178775436 GGGACTATAGCTTCATGGA--------------CAAATTCTGAAGAATTTATCTCTGCTTCTGTAGGATG-------CTAACCTAACCAATCAAGGAATGTTT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135662522  82 + 135778131 GGGACTATAGCTTCATGGA--------------CAAATTCTGAAGAATTTGTCTCTGCTCCTGTGGGATG-------CTAACCTAACCAATCAAGGAATGTTT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190766985  82 - 190850796 GGGACTACAGCTTCATGGA--------------CAAATTCTTCAGAATTTGTCTCTGCTCCTGTGGGATG-------CTAACCTAAACAATCAAGGAATGTTT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18206613 103 -  59632846 GGAGCTCTTGCTCCATGGAGCCAACCCCTTGGCCCACATCTGAAGAGTTTGTCTCTGCACCTTTGGGGAACTTCTGTCTAACTTGGACAATCAAAGAACGTTT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87956273  44 - 129401213 I

a score=94533.000000
s hg38.chr4_KI270925v1_alt    552183 45 +    555799 GCTCAATGGAATGAAACATCTTAA-TGCAGCTTGCCAGCCAATATC
s panTro4.chr7               2108448 45 - 161824586 GCTCAATGGAATGAAACATCTTAA-TGCAGCTCGCCAGCCAATATC
i panTro4.chr7             C 0 C 0
s nomLeu3.chrUn_JH996241_1    509843 45 -    540987 GCTCAATGGAATGAAACATCTTAA-TGCAGCTCGCCAGCCAATATC
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s rheMac3.chr5             183918298 45 + 184069350 GCTCAGTGGAATGAAACATCTAAA-TGCAGCTCGCCAGCCAATATC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189312097 45 + 189454096 GCTCAGTGGAATGAAACATCTAAA-TGCAGCTCGCCAGCCAATATC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178728647 45 + 178775436 GCTCAGTGGAATGAAACATCTAAA-TGCAGCTCGCCAGCCAGTATC
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135662604 45 + 135778131 GCTCAGTGGAATGAAACATCTAAA-TGCAGCTCGCCAGCCAATATC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190767067 46 - 190850796 GCTCAATGTAACGAAGTATCTTAACCGTAGCCAATCAGCCAGTATC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18206716 20 -  59632846 -GTTAATGAAATTAAACACCT-------------------------
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87956273 44 - 129401213 I

a score=2338151.000000
s hg38.chr4_KI270925v1_alt    552228 811 +    555799  
s panTro4.chr7               2108493 813 - 161824586  
i panTro4.chr7             C 0 I 9
s nomLeu3.chrUn_JH996241_1    509888 811 -    540987  
i nomLeu3.chrUn_JH996241_1 C 0 I 9
s rheMac3.chr5             183918343 798 + 184069350  
i rheMac3.chr5             C 0 I 336
s macFas5.chr5             189312142 798 + 189454096  
i macFas5.chr5             C 0 I 332
s papAnu2.chr5             178728692 813 + 178775436  
i papAnu2.chr5             C 0 I 9
s chlSab2.chr7             135662649 808 + 135778131  
i chlSab2.chr7             C 0 I 9
s calJac3.chr3             190767113 796 - 190850796  
i calJac3.chr3             C 0 I 9
s mm10.chr8                 87956317 845 - 129401213  
i mm10.chr8                I 44 I 9
s canFam3.chr16             18206736 749 -  59632846  
i canFam3.chr16            C 0 C 0

a score=683831.000000
s hg38.chr4_KI270925v1_alt    553039 308 +    555799 ---------GTAATG-A-GTTTTTATAAAGCAATTGA-TATCACTAAAAATATAATTATAATAAATAAAATTATAGGA---AAAA---GGAA-ATCTTCATTCAGAC-AATGCCAAA--TTTTT----TAACTCATTGCTAAAAGATTATGTTTGTACATGAAAAA-TTTTACACA-TTCTTTCTATGAGATAAACCTGATAACACC---TT-GAAAACTTAATAGTTATGGAAAAGGAACTACTGTGAT--------------------------------------------------------------------------------------------ATTTTTTAGAGAA---TGTCGTGTTCTTGATGTTC-TTGAGTGAGCT--GTCTCATGTTATTAGAAGGGAAACAGCACCACCTTGTGGGGAAACAA---------------------
s panTro4.chr7               2109315 290 - 161824586 ---------GTAATG-A-GTTTTTATAAAGCAATTGA-TATCattaaaaatataattataataaataaaattataGGG---AAAA---GGAA-ATCTTCATTCTGAC-AATATCAAA--TTTTTTAACTAACTCATTGCTAAAAGATTATGTTTCTACATGAAAAA-TTTTACACA-TTCTTTCTATGAAATAAACCTGATAACACC---TT-GAAAACTTAACAGTTATGGAAAAGGAACTACTGTGAT---------------------------------------------------------------------------------------------TTTTTTAGAGAA---TGTCATGTTCTTGATGTTC-TTGAGTGAGCT--GTCCCATGTTATTAGAAAGGAAACAG------------------------------------------
i panTro4.chr7             I 9 C 0
s nomLeu3.chrUn_JH996241_1    510708 284 -    540987 ---------GTAATG-A-GTTTTTATAAAGCAATTGA-TATCAGTAAAAATATAATTATAATAAATAAAATTATAGGG---AAAA---GGAA-ATCTTCATTCTGAC-AATGCCAAA--TTTTTTAACTAACTCATTGCTAAAAGATTATGTTTCTACATGAAAAATTTTTACACA-----TTCTATGTGATAAGCCTGAAAACACC----T-GAAAACTTAACAGTTATGTAAAAGGAACTACTGTGAT--------------------------------------------------------------------------------------------TTTTTTTAGAGAA---TG---TGTTCTTGCTGTTC-TTGAGTGAGCT--GTCTCATGTTATTAGAAGGGAAACAG------------------------------------------
i nomLeu3.chrUn_JH996241_1 I 9 C 0
s rheMac3.chr5             183919477 276 + 184069350 ---------GTAATG-A-GTTTTTATAAAGCAATTGA-TATCACtaaaaatataattataataaataaaattataGGG---AAAA---GGAA-A---TCATTCGGAC-AATGCCAAA--TTTTTTAACTAACTCGTTGCTAAAAGATTACGTTTCTACATGAAAAA-TTTTACACA-TTCTTTCTATAAGATAAACCTGATAACACC---TT-GAAAACTTAATGGTTATGGAAAAGGAACTGTGGTGAT--------------------------------------------------------------------------------------------ATTTTTTAGAAAA---TG------------TGTTC-TTAAGTTAGCT--GTGTCATGTTATTAGAAGGGAAACAG------------------------------------------
i rheMac3.chr5             I 336 C 0
s macFas5.chr5             189313272 276 + 189454096 ---------GTAATG-A-GTTTTTATAAAGCAATTGA-TATCACTAAAAATATAATTATAATAAATAAAATTATAGGG---AAAA---GGAA-A---TCATTCGGAC-AATGCCAAA--TTTTTTAACTAACTCGTTGCTAAAAGATTACGTTTCTACATGAAAAA-TTTTACACA-TTCTTTCTATAAGATAAACCTGATAACACC---TT-GAAAACTTAATGGTTATGGAAAAGGAACTGTGGTGAT--------------------------------------------------------------------------------------------ATTTTTTAGAAAA---TG------------TGTTC-TTAAGTTAGCT--GTGTCATGTTATTAGAAGGGAAACAG------------------------------------------
i macFas5.chr5             I 332 C 0
s papAnu2.chr5             178729514 278 + 178775436 ---------GTAATG-A-GTTTTTATAAAGCAATTGA-Tatcactaaaaatataattataataaataaaattataggg---aAAA---GGAA-CTCTTCATTCGGAC-AATGCCAAA--TTTTTTAACTAACTCGTTGCTAAAAGATTATGTTTCTACATGAAAAA-TTTTACACA-TTGTTTCTATAAGATAAA-CTGATAACACC---TT-GAAAACTTAATGGTTATGGAAAAGGAACTGTGGtgat--------------------------------------------------------------------------------------------attttttagaaaa---tg------------tgttC-TTAAGTTAGCG--GTCTCATGTTATTAGAAGGGAAACAG------------------------------------------
i papAnu2.chr5             I 9 C 0
s chlSab2.chr7             135663466 269 + 135778131 ---------GTAATG-A-GTTTTTATAAAGTAATTTA-TATCACTGAAAATAT----------AATAAAATTATAGGG---AAAA---AGAA-ATCTTCATTCGGAC-AATGCCAAA--TTTTTTAACTAACTCATTGCTAAAAGATTATGTTTCTACATGAAAAA-TTTTACACA-TTCTTTCTGTAAGATAAACCTGATAACACC---TT-GAAAACTTAATAGTTATGGAAAAGAAACTGTGGTGAT--------------------------------------------------------------------------------------------GTTTTTTAGAAAA---TG------------TGTTC-TTGAGTTAGCT--GTCTCATGTTATTAGAAGGGAAACAG------------------------------------------
i chlSab2.chr7             I 9 C 0
s calJac3.chr3             190767918 373 - 190850796 ---------GCAATG-A-GTTTTTAT-AAGCAATTTA-CATCACtaaaattataattattataaataaaattataGGG---AAAA---TGAATATCTTCATTCTGAC-AATGCCAAATGTTTTTTAGCAAA--CATTGCTAAAAAAAT-TGTTTCTACATGAAAAA-TTTTACATA-TTCTTTCTATGACATAAAGCTGATAACACC---TT-GAAAACGTAGTAGTTATGGAAAATGAACTACTGTGATTTTTTATTCTCACCCTCCACCTCCATTCTCTTTTGTTTTTTATTATGTTTTAGGTTTTGGGTACATGTGAAGAACACTTAAGATTGTTGCGTATTTTTTAGAGTA---TGTCG---------TGATC-TTGGGTTAGCT--GTCTCATGTTATCAGAAGGGGAACAG------------------------------------------
i calJac3.chr3             I 9 C 0
s mm10.chr8                 87957171 282 - 129401213 ---------ATAAAGTT-GTTTTTATAAAGCAGTTGGTTATCACTAAA---ACAGTCATTATAAATTAAGTTACAGGGCATAAAG---GGAC-ATCTTTATTCAGACAAATGCCAAA---GTATGAACTAACTCAGTACCAAAA-ATTATGTTTTTACAGGAAAAA-CACCACACA-TTCTCTTTGTGGAATAACTCT--TAACACCATAGT-GAAATTTTAATAACTCTGCAGCAGGAACTATGGTGAT--------------------------------------------------------------------------------------------TTTTGCAGTACAT---TG------------TGTTCGCTGGAGCGCCT--GCCATGAGTTATTAGAAAGGAAACAC------------------------------------------
i mm10.chr8                I 9 I 366
s canFam3.chr16             18207485 316 -  59632846 GTATATAATATAATG-ATGTTTTTATAAGGCTGTTAG-TATCACTAAAAACATAATTATTATAAATGAAATTATAAGG---AAAAAGGGGAA-ATCTTCACTCTGAC-ATTGCTCAA--TTTTGAGGTTAACTTATTGCTAAAA-ATTGTGTTTCTACAAGAAAAG-CCCTACACATTTCCTTCTATGGGACAAATCTAATAGGACC---CTAAAAAACCCAATAATTATAAAATAGGAACTATAGTAAT----------------------------------------------------------------------------------------------TTTTTAGAGTACTTTG------------TGTTC-CTGGG-AAGCTGCGCCTTGTGTTACTAGAAAGGAAACAG---------------------TACCACCTTGTGGACAAATAA
i canFam3.chr16            C 0 I 41

a score=690400.000000
s hg38.chr4_KI270925v1_alt    553347 309 +    555799 CACCACCTTGTGGACAAACAAAGAAAGTGAATGAAA-------------TTTTAGGGCCGGGTGC------------------Ttaatcccagcacttttgggagacctggg-aggagggtaacttgagcccaagagttcaagaccagcctgggcaacacaatgacacacccatctttaccaaaaatttgaaaaattcgctgggcttggtggctcacacctcaggtcccagctacttggaaggctgaggtgggaggatcgcttaagccctggaggtcaaggctgcagtgagtgtgatcataccactgcattccagcctgggtgacacggcaagaccctagc
s panTro4.chr7               2109605 321 - 161824586 CAGCACCTTGTGGACAAACAAAGAAAGTGAATGAAT-------------TTTTAGgacctggtgc----agtggttcaggcctgtaatcccagcac-tttgggagacttggg-cggagggtaacttgagcccaagagttcaagaccagcctgggcaacacagtgacacgccaatctttaccaaaaa-ttgaaaaatttgctgggcttggtggctcatacctcaggtcccagctacttggaaggctgaggtgggaggatcgcttaagcccaggaggtcaaggctgcagtgactgtgatcataccactgcattccagcctgggtgacacagcaagaccctatt
i panTro4.chr7             C 0 C 0
s nomLeu3.chrUn_JH996241_1    510992 326 -    540987 CAGCACCTTGTGGACAAACAAAGAAAGTGAATTAAT-------------TTTTAGGGCCCGGTGCATTCATtggctcaggcctgtaatcctagcac-tttgggagacctggg-cggagggtaacttgagcccaagagttcaagaggagcctgggcaacacagtgacatgcccatctttaccaaaaatttgaaaaattcgctgggcttggtggctcatacctcaggtcccagctacttggaaggctgaggtgggaggatcacttaagcccaggaggtcaaggctgcagtgagtgtgatcataccactgcattccagcctgggtgacacagcaagaccctatc
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s rheMac3.chr5             183919753 313 + 184069350 CACCACCTTGTGTACAAACAAAGAAAGTGAATGAAT-------------TTTTAGggcccagttc----agtggctcaggcctaaaatcccagcac-cttgggagacttggg-cagagggtaacttgagcccgagagttcaagaccagcatgggcaacacagtgacaagcccatctttacca---------aaaatttgctgggcttggtggcttatacctcaggtcccagctacttggaaggctgaggtgggaggatcacttaagcccaggaggtgaatcctgcagtgagtgtgatcataccactgcattccagcctgggtgacacagcaagaccctatc
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189313548 313 + 189454096 CACCACCTTGTGTACAAACAAAGAAAGTGAATGAAT-------------TTTTAGggcccggttc----agtggctcaggcctaaaatcccagcac-cttgggagacttggg-cagagggtaacttgagcccgagagctcaagaccagcatgggcaacacagtgacaagcccatctttacca---------aaaatttgctgggcttggtggcttatacctcaggtcccagctacttggaaggctgaggtgggaggatcacttaagcccaggaggtgaagactgcagtgagtgtgatcataccactgcattccagcctgggtgacacagcaagaccctatc
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178729792 322 + 178775436 CACCACCTTGTGTACAAACAAAGAAAGTGAATGAAT-------------TTTTAGGGCCTGgttc----agtggctcaggcctaaaatcccagcac-cttgggagacctgGG-CAGAGGGTAACTTGAGCCTgagagctcaagaccagcatggccaacacagtgacaagcccatctttaccaaaaatttgcaaaatttgctgggcttggtggcttatacctcaggtcccagctacttggaaggctgaggtggctggatcacttaagcccaggaggtgaagactgcagtgagtgtgatcataccactgcattccagcctgggtgacacagcaagaccctatc
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135663735 322 + 135778131 CACCACCTTGTGTACAAACAAAGAAAGTGAATGAAT-------------TTTTAGggcccggttc----agtggcttaggcctaaaatcccagcac-cctgggagacctggg-cagagggtaacttgaggccgagagttcaagaccagcctgggcaacacagtgacaagcccatctttaccaaaaatttgaaaaatttgctgggcttggtggctcatacctcaggtcccagctacttggaaggccgaggtaggaggatcacttaagcccaggaggtcaaggctgcagtgagtgggatcataccactgcattccagcctgggtgacacagcaagaccctgtt
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190768291 336 - 190850796 CAACACCTTGTGGACAAAGAAAGAAAGCGAATGATTTTTTTTTTTTTTCTTTTAgggtgcggtat----agtggctcacgcctgcaatcctagcac-tttgggagacctgggccagagaacaacttgagcccaagaggtcaggaccagccggggcaacacagtgacacacacatctttaccaaacatttgaaaaatctgctgggcacagtggctcagacctcaggtcccagctacttagaaggctaagttgaaaggatcacttaagcccaggaggtcgaggctgcagtgaatgtgagcataccactgcattccagcctggatgacacagcaagaccctatc
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87957453 366 - 129401213 I
e canFam3.chr16             18207801  41 -  59632846 I

a score=169954.000000
s hg38.chr4_KI270925v1_alt    553656 68 +    555799 tc-aaaaaa-a-------TTATGTTTATGTAGCACTTCCTACAAGGAATATAGTA------TCTTGTTTGTATTTAAATGACA
s panTro4.chr7               2109926 68 - 161824586 tc-aaaaaa-a-------TTATATTTATGTGGCACTTTCTACAAGGAATATAGTA------TCATGTTTGTATTTAAATGACA
i panTro4.chr7             C 0 C 0
s nomLeu3.chrUn_JH996241_1    511318 68 -    540987 tc-aaaaaa-a-------TTATGTTTATGTAGCACTTTCTACAAGGAATATAGTA------TCATGTTTGTATTTAAATGACA
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s rheMac3.chr5             183920066 68 + 184069350 tc-aaaaaa-a-------aTATGTTTATGTAGCACTTTCTACAAGGAATATAGTA------TCATGTTTGTATTTAAACAACA
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189313861 68 + 189454096 tc-aaaaaa-a-------aTATGTTTATGTAGCACTTTCTACAAGGAATATAGTA------TCATGTTTGTATTTAAACAACA
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178730114 69 + 178775436 tcaaaaaaa-a-------atatgtttatgtagCACTTTCTACAAGGAATATAGTA------TCATGTTTGTATTTAAACAACA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135664057 68 + 135778131 tc-aaaaaa-a-------aTATATGTATGTAGCACTTTCTACAAGGAATATAGTA------TCATGTTTGTATTTAAACAACA
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190768627 75 - 190850796 tc-aaaaaaCA-------TTATGTTTATGTAACAGTTTCTACAAGGAATATAGTATCAGTGTCATGTTTGTATTTAAATGGCA
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18207842 75 -  59632846 TC-AAAAAC-AGCACTTTTTACGTTTGTGTAGTCCTTCCTCCACAAGAAGTAGTG------TCACATTTATATTTAAAGGACA
i canFam3.chr16            I 41 I 199
e mm10.chr8                 87957453 366 - 129401213 I

a score=642432.000000
s hg38.chr4_KI270925v1_alt    553724 286 +    555799 TCGGGACCAgcatggtggcttacagctgtaatctcagctcttcagaaggcagaaggcaggaggatcacttgaggccaggagttggaagaccagcctgggcagcataatga------------------------aataataataatagtaataaaaagctaggcgtgctggcacacacctgcagacctagctactgtggaggctgagtggcaggatcgctttgagaccaggagtttgattgtactgcgtattgtgagctacgatcgagccactccagtc-----cagacaacacggcaagacccagtctctaagc
s panTro4.chr7               2109994 301 - 161824586 TCAGGACCAgcatggtggcttacacatgtaatctcagctcctcagatggtggaaggcaggaggattgcttgaggccaggagttggaagaccagcctgggcagcataatgaagccctcatttctac---------aaaaataataatagtaatcaaaagctaggtgtgctggcacacacctgcagacctagctactgtggaggctgagtggaaggataacattgagcccaggagtttgattgtattgtgtattgtgagctacgacctagccactccactc-----cagacaatatggcaagatccagtctctaaac
i panTro4.chr7             C 0 C 0
s nomLeu3.chrUn_JH996241_1    511386 301 -    540987 TGAGGACCAgcatggtggcttacacctgtaatctcagctcctcagatggcggaaggcaggaggatcacttgaggtcaggatttggaagaccagcctgggcagcataatgaaacccccatttctac---------aaaaataataatagtaatcaaaagctaggcgtgctggcacacacctgcagacctagctactgtggaggctgagtggaaggatcactttgagcccaggagtttgattgtattgtgtattgtgagctacgatcgagccactccactc-----cagacaacacggaaagacccagtctctaaac
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s rheMac3.chr5             183920134 309 + 184069350 TCAGggccagcatggtggcttacacctgtaatctcagctcttcagaaggcggaaggcaggaggatcacttgaagccaagagctggaagaccagcctgggcagcataatgaaacccacatctctacaataataataacaataataatagtaataaaaagctaggcatgctggcacacacctgtagacctagctactgtggaggctgagtgggaggatcgctttgagcccaggagtttgattgtattgtgtattgtgagctgtgactgagccactcca-tc-----cagacaacacggcaagacccagtctctaaac
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189313929 309 + 189454096 TCAGggccagcatggtggcttacacctgtaatctcagctcttcagaaggcggaaggcaggaggatcacttgaagccaagagctggaagaccagcctgggcagcataatgaaacccacatctctacaataataataacaataataatagtaataaaaagctaggcatgctggcacacacctgtagacctagctactgtggaggctgagtgggaggatcgctttgagcccaggagtttgattgtattgtgtattgtgagctatgactgagccactcca-tc-----cagacaacacggcaagacccagtctctaaac
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178730183 309 + 178775436 TCAGGaccagcatggtggcttacacctgtaatctcagctcttcaGAAGGcggaaggcaggaggatcacttgaagccaagagctggaagaccagcctgggcagcataatgaAACCCAcatctctacaataataataacaataataatagtaataaaaagctaggcatgctggcacacacctgtagacccagctactgcggaggctaagtgggaggatcgctttgagcccaggagtttgattgTATTGCGTATTGTGAGCTATGACTGAGCCACTCCA-TC-----CAGACAACAcggcaagacccagtctctaaac
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135664125 310 + 135778131 TGAGGACCAACATggtggcttacacctgtaatctcagctcttcagaaggcggaaggcaggaggatcacttgaggccaggagctggaagaccagcctgggcagcataatgaaacccacatctctacaataataataacaataataatagtaataaaaatctaggtgtgctggcacacacctgtagacctagctactgcggaggctgagtgggaggattgctttgagcccaggagtttgattgtattgtgtattgtgagttatgactgagccactccactc-----cagacaacactgcaagacccagcctctaaac
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190768702 302 - 190850796 TCAGAACCggcacagtggctcagacctgtaatct-aactcttcagaaggtggaaggcaggagaatcacttgaggccaggagttggaagaccggccagggcagcataatgaaacccccatctctataaaaatcataacaacaataa---taataaaaagctaggcttgctgacacacacctgtaggcctagctattctggaggctgaggcagaggattgc-ttaagtccaggagtttga-tgt------tattgtgagctgtgatagagccacttcactctagcatagacagcttggcaagacccagtctctaa-c
i calJac3.chr3             C 0 C 0
e mm10.chr8                 87957453 366 - 129401213 I
e canFam3.chr16             18207917 199 -  59632846 I

a score=65531.000000
s hg38.chr4_KI270925v1_alt    554010 23 +    555799 aaaataaaGGGACATCAGAGCAT
s panTro4.chr7               2110295 23 - 161824586 aaaataaaGGGACATCAGAGCAT
i panTro4.chr7             C 0 C 0
s nomLeu3.chrUn_JH996241_1    511687 23 -    540987 aaaataaaGGGACATCAGAGCAC
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s rheMac3.chr5             183920443 23 + 184069350 aaaataaaGGGACATCAGAGCAT
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189314238 23 + 189454096 aaaataaaGGGACATCAGAGCAT
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178730492 23 + 178775436 aAAATAAAGGGACATCAGAGCAT
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135664435 23 + 135778131 aaaataaaaGGACATCAGAGCAT
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190769004 23 - 190850796 aaaataaaGGAACATCACAGCAT
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18208116 22 -  59632846 AAAATAAA-GGACATCATGGTAT
i canFam3.chr16            I 199 C 0
e mm10.chr8                 87957453 366 - 129401213 I

a score=311590.000000
s hg38.chr4_KI270925v1_alt    554033  99 +    555799 TGCTTACAGAGA---TTTATAAATGATCC--CAAAATGTCTTCAGGGAGATAAATTATC---TAAATATAGCTAT--ATGGACTCTTCCTAAATTCCAAATTTGGGTGG
s panTro4.chr7               2110318  99 - 161824586 TGTTTATAGAGA---TTTATAAATGATCC--CAAAATGTCTTCAGAGAGATAAATCATC---TAAATATAGCTAT--ATCGACTCTTCCTAAATTCCAAATTTGGGTGG
i panTro4.chr7             C 0 C 0
s nomLeu3.chrUn_JH996241_1    511710  99 -    540987 TGCTTATAGAGA---TTTATAAATGATCC--CAAAATGTCTTCAGGGAGATAAATCATC---TAAATATAGCTAT--ATCGACTCTTCCTAAATTCCAAATTTGGGTGG
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s rheMac3.chr5             183920466  99 + 184069350 TGCTTGTAGAGA---TTTACAAATGATCC--CAAAATGTCTTCAGGGAAATAACTCAAC---TAAATATAGCTAT--ATGGACTCTTCCTAAATTCCAAATTTGGGTGG
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189314261  99 + 189454096 TGCTTGTAGAGA---TTTACAAATGATCC--CAAAATGTCTTCAGGGAAATAACTCAAC---TAAATATAGCTAT--ATGGACTCTTCCTAAATTCCAAATTTGGGTGG
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178730515  99 + 178775436 TGCTTATAGAGA---TTTACAAATGATCC--CAAAATGTCTTCAGGGAGATAACTCAAC---TAAATATAGCTAT--ATGGACTCTTCCTAAATTCCAAATTTGGgtgg
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135664458  99 + 135778131 TGCTTATAGAGA---TTTACAAATGATCC--CAAAATGTCTTCAGGTAGATAACTCAAC---TAAATATAGCTAT--ATGGACTCTTCCTAAATTCCAAATTTGGGTGG
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190769027  99 - 190850796 TGCTTACAGAGA---TTTATAAATGATGC--CAAAATGTCTTCAGGGAGGTAAATCATC---TAAATATAGCTAT--ATGGACTCTTTCTAAATTCCAAATTTGGGTGG
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87957819 105 - 129401213 TACTTACAGAGCTGTTGTATAAATGGTACAAAAAAATATCTTCAGGG-GATACATCGTCATTCAAATATGGCTA---GTGAACTCTTTCTAAATTCCAAGTTTAGGGGG
i mm10.chr8                I 366 I 421
s canFam3.chr16             18208138  99 -  59632846 TGCTTATAGAGA---TTTATCAATGATCC--CAAAATGTATTCAGGGGGACACATCACC---TGAATGTAGCTACTGACTGACTCTT--GAAATTCCATATGTGGGTGG
i canFam3.chr16            C 0 C 0

a score=35320.000000
s hg38.chr4_KI270925v1_alt    554132 22 +    555799 -AAA-AATAAATGAGATAGAAGAC
s panTro4.chr7               2110417 23 - 161824586 -GAACAATAAATGAGATAGAAGAC
i panTro4.chr7             C 0 C 0
s nomLeu3.chrUn_JH996241_1    511809 23 -    540987 -GAAAAATAAATGAGATAGAAGAC
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s rheMac3.chr5             183920565 19 + 184069350 -GAAAAATAAATG----AGAAGAC
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189314360 19 + 189454096 -GAAAAATAAATG----AGAAGAC
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178730614 19 + 178775436 -gaaaaataaatg----agaagac
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135664557 19 + 135778131 -GAAAAATAAATG----AGAAGAC
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190769126 23 - 190850796 -GAAAAATAAATGAGATCGAGAAC
i calJac3.chr3             C 0 C 0
s canFam3.chr16             18208237 18 -  59632846 GGAAAAAAAGATA------CAGAT
i canFam3.chr16            C 0 C 0
e mm10.chr8                 87957924 421 - 129401213 I

a score=661980.000000
s hg38.chr4_KI270925v1_alt    554154 239 +    555799 TTCTTGAAATGTATCAAGACTCAGAA---AGACAA---AACAAAAACTTTCATTAGGCAG--------------------------------------------------CTAAAGAGG-AAATCCCAGCGACAAGAAGCCAAAGGAAAGGGAAAAGAAATGACAACAATGACCATACTTTC--TACACATCCAACCTCTTCTCTACCACCACTCAGCAAGACCTCCCACAGCCAATCACTGCCTTCTCTTGTGGA----CTTACCCTCTACTCTGTGAACACATGAGccagagaaccctga
s panTro4.chr7               2110440 283 - 161824586 TTCTTGAAATGTATCAAGACTCAGAA---AGACAA---AACAAAAACTTTCATTAGGCAGTATCAAGAATGTTCAT---TGCTATTTCTAATTTATG---ATACGATCATCTAAAGAGG-AAATCCCAGCATCAAGAGGCCAAAGGAAAGGGAAAAGAAATGAAAACAAGGACCATACTTTC--TCCACATCCAACCTCTTCTCTACCACCTCTCAGCAAGACCTCCCACACCCAATCACTGCTTTCTCTTGCGGA----CTTACCCTCTACTCTGTGAACACATGAGccagagaaccctga
i panTro4.chr7             C 0 C 0
s nomLeu3.chrUn_JH996241_1    511832 283 -    540987 TTCCTGAAATGTATCAAGACTCAGGA---AGACAA---AACAAAAACTTTCATTAGGCAGTATCAAGAATGTTCATTAATGCCATTTCTAATTTATG---ATTCGATCATCTAAAGAGG-AAATCCCAGCAACAAGAGGCCAAAGGAAAGGGAAAAGAAATGAA---AATGAGCATCCTTTC--TACACTTCCAACCTCTTCTCTACCACCTCTCAGCAAGACCTCCCACAGCCAATCACTGCTTTCTCTTGCAGA----TTTACCCTCTACTCTGTGAACACATGAgtcagagaatgctga
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s rheMac3.chr5             183920584 282 + 184069350 TTCTTGAAATGTATCAAGACTCAGAA---AGAC-----AACAAAAACTTTCTTTAGGCAGTATCAAGAATGTTCATTAAT-CCATTTCTAGTTTATG---ATACAATAATCTAAAGAGG-AAATCCCAGCAACAAGAGGCCAAAGGAAAGGGAAAATAAATGACAGCAATGACCATACTTTCTATATACCTCCAACCTCTTCTCTACCACCACTCAGCAAGA---CCCACAGCCAACCACTGCTTTCTCTTGTGGA----CTTACCCTCTACTCTGTGAACAtatgaaccagagaaccctga
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189314379 282 + 189454096 TTCTTGAAATGTATCAAGACTCAGAA---AGAC-----AACAAAAACTTTCTTTAGGCAGTATCAAGAATGTTCATTAAT-CCATTTCTAGTTTATG---ATACAATAATCTAAAGAGG-AAATCCCAGCAACAAGAGGCCAAAGGAAAGGGAAAATAAATGACAGCAATGACCATACTTTCTATATACCTCCAACCTCTTCTCTACCACCACTCAGCAAGA---CCCACAGCCAACCACTGCTTTCTCTTGTGGA----CTTACCCTCTACTCTGTGAACAtatgaaccagagaaccctga
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178730633 282 + 178775436 tTCTTGAAATGTATCAAGACTCAGAA---AGAC-----AACAAAAACTTTCTTTAGGCAGTATCAAGAATGTTCATTAAT-CCATTTCTAGTTTATG---ATACAATAATCTAAAGAGG-AAATCCCAGCAACAAGAGGccaaaggaaagggaaaataaatgacAGCAATGACCATACTTTCTATATACCTCCAACCTCTTCTCTACCACCACTCAGCAAGA---CCCACAGCCAACcactgctttctcttgtgga----cttACCCTCTACTCTGTGAACATATGAGCCACAGAACCCTGA
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135664576 282 + 135778131 TTCTTGAAATGTATCAAGACTCAGAA---AGAC-----AACAAAAACTTTCATTAGGCGGTAGCAAGAATGTTCATTAAT-CCATTTCTAGTTTATG---ATACAATAATCTAAAGAGG-AAATCCCATCAACAAGAGGCCAAAGGAAAGGGAAAATAAATGACAGCAATGACCATACTTCCTATATACTTCCAACCTCTTCTCTACCACCACTCAGCAAGA---CCCACAGCCAACCACTGCTTTCTCTTGTGGA----CTTACCCTCTACTCTGTGAACAtatgagccacagaaccctga
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190769149 286 - 190850796 TTTTTGAAATGTACCAAGGCTCAGAA---AGACAA---AACAAAAACTTTCATTAGGCAATATCAAGAATGTTCATTAATGCTATTTCTAATTTATG---ATACAATATTCTAAAAAGG-AAATCCCAGCAGCAAGAACCCAAAGGAAAGAGAAAATAAATGACAACAGTGACCATACTTTC--TACACTCCCAACCTCTTTTCTACCACCACTTAACAAGACCTCCCAAAGCCAATCACTGCTTTCTCTTGCGGA----GTTACCCTCTACTCTGTGAACAtatgagccagagaaccctgg
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87958345 270 - 129401213 TTTTTAGTATGCACCACAATTCAGGA---GAACAGATTAAACAAGACTTTATTCAGGTGGTACCAAGTGTGTCCATTCTTATCATTTCTAACTT--------------------AAAAG-AGATCCAAGCAACAAGAGCCCAAAGGGAAAGTGAAGGGGGAGAAGTTGGGACTGATGCTTCC---ACATTCCCAACC-CTCCTCCAGCACCACCCAATAGGG---CTCGCTGCCATGGAGT-CTCTCTCCTGCGCATGTCTCTCCTTCCTACTTCGTAAACATGCAGTGCAGGTAACCCTGG
i mm10.chr8                I 421 C 0
s canFam3.chr16             18208255 255 -  59632846 TTCTTCGAATGTATCAA-ACTTAGAAGACAAAC-----AAAAAAGGCTTTAATCAGGCAGTATCAGTGACATCCATTAGCGCAGTTCCTAATTCATGGTAATATCGTAAACTAAAACGGCAAATCCCAGCAACAA------------AAGGAAAAGGAAATAAGGGCTCAAACTCCACCTCC---ACGCTCCTGAACT------GGCCACCAGTTAACAAAG---CCC----CCAACCCCTGCTTTACCCTCTCAA----CTCCCCTTCCCTCCAG---------GGTCCAGGGAAAACTGA
i canFam3.chr16            C 0 N 0

a score=691875.000000
s hg38.chr4_KI270925v1_alt    554393 305 +    555799 gaagtccctgggtcccttccaggggctctgcaaggtcaaaactc---ttttcataaaaatacacaggttttgttgaccttttccaatttcattctctcacaagtataattggagttt-cccagaggctacctgacgtgggatgtcacaagaaattaaatgtagaagcagaaaggagaacgaagttttcttctattaaaccagacattaaagacatacttaaaaatataaaacaatgtcaatgttctcaccaactttactgtttaaaaatgataactttaaataaaaatgtgatttatgtaaacatataa
s panTro4.chr7               2110723 304 - 161824586 gaagtccctgagtcccttccaggggctctgcaaggtcaaaagtc---ttttcataaaaatacacaggctttgtttaccttttccactttcattctctcacaggtataattggagttt-cccagaggctacctgacaagtgatgtcaaaagaaattaaatgtagaagtagaaaggagaac-aagttttcttctattaaaccagacactaaagacatacctaaaaatataaaacaatgtcactgttctcacaaactttactgcttaaaaatgataattttaaataaaaatgtgatttatgtaaacatataa
i panTro4.chr7             C 0 C 0
s nomLeu3.chrUn_JH996241_1    512115 304 -    540987 gaagtccctgagtcccttccaggggctctgcaaggtcaaaagtc---ttttcataaaaa-acacaggttttgttgaccttttccactttcattctctcacaagtataattggagttt-cccagaggctacctgacatgggatgtcacaagaaattaaatgtagaagcagaaaggagaaccaagttttcttctattaaaccagacgttaaagacatacctaaaaatataaaacaatgtcactattctcaccaactttactgcttaaaaatgataattttaaataaaaatgtgatttatgtaaacatgtaa
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s rheMac3.chr5             183920866 305 + 184069350 gaagtccctgggtcccttccaggggctctgcaaggtcaaaactc----tttcataaaaatacacaggttttgtttaccttttccactttcatgctctcacaagtataactggagtttccccagaggcttcctgacatgggacgtcacaagaaattaaatggagaagcagaaaggagaaccaagttttcttctattcaaccagacattaaaggcatacataaaaatataaaacaatgtcaccattctcaccaactttactgcttaaaaatgacaattttaaataaaaatgtgatttatgtaaacatataa
i rheMac3.chr5             C 0 C 0
s macFas5.chr5             189314661 305 + 189454096 gaagtccctgggtcccttccagaggctctgcaaggtcaaaactc----tttcataaaaatacacaggttttgtttaccttttccactttcatgctctcacaagtataactggagtttccccagaggcttcctgacatgggacgtcacaagaaattaaatggagaagcagaaaggagaaccaagttttcttctattcaaccagacattaaaggcatacataaaaatataaaacaatgtcaccattctcaccaactttactgcttaaaaatgacaattttaaataaaaatgtgatttatgtaaacatataa
i macFas5.chr5             C 0 C 0
s papAnu2.chr5             178730915 299 + 178775436 GAAGTCCCTGGGTCCCTTCCAGGGGCTCTGCAAGGTCAAAACTC----TTTCATAAAAATACACAGgttttgtttaccttttccaCTTTCATGCTCTCACAAGTATAACTGGAGTTT-CCCAGAGGCTTCCTGACATGGGACGCCACAAGAAATTAAATGGAGAAGCAGAAAGGAGAACCAAGTTTTCTTCTATTCAACCAGACATTAAAGgcatagataaaaatataaaacaatgtcaCCATTCTCACCAACTTTACTgcttaaaaatgataattttaaataaaaatgtgatttatgtaaaca-----
i papAnu2.chr5             C 0 C 0
s chlSab2.chr7             135664858 304 + 135778131 gaagtccctgggtcccttccaggggctctgcaaggtcaaaactc----tttcataaaaatacacaggtcttgtttaccttttccactttcattctctcacaagtataactggagttt-cccagaggctacctgacatgggacgtcacaagaaattaaatggagaagcagaaaggagaaccaagttttcttctattcaaccagacattaaagacatacataaaaatataaaacaatgtcaccattctcaccaactttactgcttaaaaatgataattttaaataaaaatgtgatttatgtaaacatgtaa
i chlSab2.chr7             C 0 C 0
s calJac3.chr3             190769435 277 - 190850796 gaagtccctgggtcccttccaggagctctgcaaggtcaaaacta---ttttcataaaaatacacaggttttgtttactttttccactttcattctctcacaagtataactggagttt-cccagaggctacctgacatgggataccacaagaaatcagacggagaagaagaaaggaaaaccaagttttcttatattaaaccagacattaaagacacacataaaattata----------------------atctttattg-ttaaaaattataactttaaataaaaatatgatttatgttaaca-----
i calJac3.chr3             C 0 C 0
s mm10.chr8                 87958615 243 - 129401213 GAGGTCCCTGCAGCCCT---------TCTGCGAAATCGAAAATTTGTTTTTTTTAATAATTCGTGAATGCTACTATGTTCTTCCTCATGCCTCTTCT---------------------CTCAG-------Ctaacg----------caagaaattaaatgtaaaggccaatgaaggaatcaatcgctcttccatggagccaggcatgcaagg-----------gtataaagcaaagctgttcttctcatcaaatctattcctctgaagaaatagctttcagta--------atttctgttaaagtgtaa
i mm10.chr8                C 0 N 0

a score=1034151.000000
s hg38.chr4_KI270925v1_alt    554698 505 +    555799  
s panTro4.chr7               2111027 510 - 161824586  
i panTro4.chr7             C 0 C 0
s nomLeu3.chrUn_JH996241_1    512419 504 -    540987  
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s rheMac3.chr5             183921171 493 + 184069350  
i rheMac3.chr5             C 0 I 46
s macFas5.chr5             189314966 489 + 189454096  
i macFas5.chr5             C 0 I 1
s papAnu2.chr5             178731214 520 + 178775436  
i papAnu2.chr5             C 0 I 1
s chlSab2.chr7             135665162 512 + 135778131  
i chlSab2.chr7             C 0 I 63
s calJac3.chr3             190769712 500 - 190850796  
i calJac3.chr3             C 0 C 0

a score=6348.000000
s hg38.chr4_KI270925v1_alt    555203 12 +    555799 acaagaatatga
s panTro4.chr7               2111537 12 - 161824586 acaagaatatga
i panTro4.chr7             C 0 C 0
s nomLeu3.chrUn_JH996241_1    512923 12 -    540987 acaagaatatga
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s calJac3.chr3             190770212 12 - 190850796 acaggaatatga
i calJac3.chr3             C 0 C 0
e chlSab2.chr7             135665674 63 + 135778131 I
e papAnu2.chr5             178731734  1 + 178775436 I
e macFas5.chr5             189315455  1 + 189454096 I
e rheMac3.chr5             183921664 46 + 184069350 I

a score=3337.000000
s hg38.chr4_KI270925v1_alt    555215 6 +    555799 cacagt
s panTro4.chr7               2111549 6 - 161824586 tacagt
i panTro4.chr7             C 0 C 0
s nomLeu3.chrUn_JH996241_1    512935 6 -    540987 tacagt
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s chlSab2.chr7             135665737 4 + 135778131 --caga
i chlSab2.chr7             I 63 I 2
s calJac3.chr3             190770224 6 - 190850796 cacagt
i calJac3.chr3             C 0 C 0
e papAnu2.chr5             178731734 1 + 178775436 I
e macFas5.chr5             189315455 1 + 189454096 I
e rheMac3.chr5             183921664 46 + 184069350 I

a score=1255739.000000
s hg38.chr4_KI270925v1_alt    555221 573 +    555799  
s panTro4.chr7               2111555 575 - 161824586  
i panTro4.chr7             C 0 C 0
s nomLeu3.chrUn_JH996241_1    512941 561 -    540987  
i nomLeu3.chrUn_JH996241_1 C 0 C 0
s rheMac3.chr5             183921710 574 + 184069350  
i rheMac3.chr5             I 46 C 0
s macFas5.chr5             189315456 573 + 189454096  
i macFas5.chr5             I 1 C 0
s papAnu2.chr5             178731735 573 + 178775436  
i papAnu2.chr5             I 1 C 0
s chlSab2.chr7             135665743 574 + 135778131  
i chlSab2.chr7             I 2 C 0
s calJac3.chr3             190770230 610 - 190850796  
i calJac3.chr3             C 0 N 0

a score=8772.000000
s hg38.chr4_KI270925v1_alt    555794 5 +    555799 ggatc
s panTro4.chr7               2112130 5 - 161824586 cgatc
i panTro4.chr7             C 0 N 0
s nomLeu3.chrUn_JH996241_1    513502 5 -    540987 cgatc
i nomLeu3.chrUn_JH996241_1 C 0 N 0
s rheMac3.chr5             183922284 5 + 184069350 cgatc
i rheMac3.chr5             C 0 N 0
s macFas5.chr5             189316029 5 + 189454096 cgatc
i macFas5.chr5             C 0 N 0
s papAnu2.chr5             178732308 5 + 178775436 cgatc
i papAnu2.chr5             C 0 N 0
s chlSab2.chr7             135666317 5 + 135778131 cgatc
i chlSab2.chr7             C 0 N 0

